chr	start	end	name	score	strand	gc	gc_bin	chrom	feature_id	feature_bin	feature_type_top	feature_types	gene_name	gene_id	transcript_ids	gene_type_top	transcript_type_top	gene_types	transcript_types	input_sum	clip_sum	enrichment_n	enrichment_l2or_min	enrichment_l2or_mean	enrichment_l2or_max	p_max	p_min	q_max	q_min
chr2	235511834	235511934	1062714	0	+	0.4	(0.39,0.419]	chr2	115651	166	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	3279	2	10.7531	10.98025	11.2074	6.26929e-7	8.0123e-10	7.55263e-4	1.14753e-6
chr17	72553733	72553833	6963848	0	-	0.59	(0.58,1]	chr17	710389	193	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	3109	2	10.4259	10.9572	11.4885	1.5732e-7	1e-12	4.83614e-4	1.89192e-8
chr17	72553334	72553433	6963844	0	-	0.50505	(0.485,0.523]	chr17	710389	189	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	3147	2	10.5085	10.9444	11.3803	9.37065e-7	1.89159e-11	8.31156e-4	1.51278e-7
chr19	17082470	17082570	7218267	0	+	0.58	(0.523,0.58]	chr19	737713	62	INTRON	INTRON	MYO9B	ENSG00000099331.14	ENST00000682292.1:ENST00000595618.5:ENST00000594824.5	protein_coding	protein_coding	protein_coding	protein_coding	0	3239	2	10.2821	10.92595	11.5698	1.5752e-6	8.25939e-12	9.73457e-4	8.66958e-8
chr7	66662680	66662780	3382031	0	+	0.54	(0.523,0.58]	chr7	326325	77	INTRON	INTRON	ENSG00000226824	ENSG00000226824.8	ENST00000693151.1:ENST00000656515.2:ENST00000448096.1:ENST00000439360.5:ENST00000657342.1:ENST00000428557.1	lncRNA	lncRNA	lncRNA	lncRNA	0	2983	2	10.8398	10.908999999999999	10.9782	4.5929e-7	6.66238e-11	7.30832e-4	3.16058e-7
chr1	1052497	1052593	1289	0	+	0.510417	(0.485,0.523]	chr1	283	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	3100	2	10.5614	10.899650000000001	11.2379	1.85827e-7	3.34337e-10	5.52204e-4	6.45409e-7
chr17	72557424	72557524	6963885	0	-	0.55	(0.523,0.58]	chr17	710389	230	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	2921	2	10.8003	10.87885	10.9574	5.0125e-7	7.17743e-11	7.30832e-4	3.25789e-7
chr17	7109781	7109879	6847731	0	-	0.510204	(0.485,0.523]	chr17	693423	5	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	2826	2	10.7469	10.82015	10.8934	3.99417e-7	1.74668e-10	7.28156e-4	5.05772e-7
chr17	7113321	7113419	6847767	0	-	0.438776	(0.419,0.45]	chr17	693423	41	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	2786	2	10.7556	10.76885	10.7821	2.32591e-6	1.04284e-9	0.00111233	1.34724e-6
chr17	72554232	72554331	6963853	0	-	0.565657	(0.523,0.58]	chr17	710389	198	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	2704	2	10.5152	10.7599	11.0046	9.41657e-7	6.07155e-11	8.31156e-4	3.16058e-7
chr1	8601603	8601703	393566	0	-	0.47	(0.45,0.485]	chr1	45045	109	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	2710	2	10.5202	10.72755	10.9349	5.6101e-7	6.50116e-10	7.30832e-4	1.01538e-6
chr21	42848433	42848532	7675456	0	-	0.666667	(0.58,1]	chr21	802287	48	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	1	5841	2	10.472	10.70145	10.9309	4.35791e-8	1e-12	2.74105e-4	1.89192e-8
chr20	62957880	62957980	7508275	0	+	0.53	(0.523,0.58]	chr20	783179	3	SS5_PROX	SS5_PROX:INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	2615	2	10.5426	10.6978	10.853	4.46019e-7	3.10159e-10	7.30832e-4	6.32563e-7
chr16	89304507	89304606	6659854	0	-	0.494949	(0.485,0.523]	chr16	666658	25	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	2687	2	10.1323	10.6849	11.2375	2.15026e-6	3.12466e-11	0.001083	2.17555e-7
chr12	56597544	56597642	5437628	0	-	0.602041	(0.58,1]	chr12	534676	21	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	1	5152	2	9.50167	10.677585	11.8535	4.13102e-9	3.38274e-12	1.22757e-4	4.37013e-8
chr17	7109682	7109781	6847730	0	-	0.474747	(0.45,0.485]	chr17	693423	4	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	2549	2	10.5605	10.66965	10.7788	1.25497e-6	2.68741e-10	9.17035e-4	5.72821e-7
chr17	7176423	7176518	6847835	0	-	0.515789	(0.485,0.523]	chr17	693458	2	SS5_PROX	SS5_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	0	2437	2	10.4722	10.615300000000001	10.7584	1.01544e-6	1.67739e-10	8.39394e-4	5.03054e-7
chr8	127849839	127849939	3918341	0	+	0.59	(0.58,1]	chr8	374180	32	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000655594.1	lncRNA	lncRNA	lncRNA	lncRNA	1	5873	2	8.91837	10.607685	12.297	4.51465e-8	1e-12	2.74105e-4	1.89192e-8
chr13	98278198	98278298	5635013	0	+	0.37	(0.36,0.39]	chr13	553480	330	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	0	2560	2	10.2617	10.597449999999998	10.9332	1.02794e-6	3.86825e-9	8.39394e-4	2.91735e-6
chr9	129498864	129498964	4250765	0	+	0.49	(0.485,0.523]	chr9	404725	4	SS5_PROX	SS5_PROX:INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	2340	2	10.4917	10.55735	10.623	9.72614e-7	2.69449e-10	8.33717e-4	5.72821e-7
chr1	1052786	1052882	1292	0	+	0.5	(0.485,0.523]	chr1	283	9	EXON_MRNA	EXON_MRNA:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	2303	2	10.3256	10.50845	10.6913	6.25236e-7	7.62218e-10	7.55263e-4	1.13284e-6
chr20	44404768	44404867	7482963	0	+	0.535354	(0.523,0.58]	chr20	779645	15	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	2233	2	10.4675	10.4872	10.5069	9.59187e-7	4.04131e-10	8.32388e-4	6.99714e-7
chr20	44404571	44404670	7482961	0	+	0.414141	(0.39,0.419]	chr20	779645	13	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	2274	2	10.2822	10.481549999999999	10.6809	4.16958e-6	1.01343e-9	0.00126679	1.31939e-6
chr17	356596	356696	6821859	0	-	0.58	(0.523,0.58]	chr17	689641	36	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	0	2262	2	10.2516	10.4754	10.6992	6.26924e-7	8.63654e-10	7.55263e-4	1.18891e-6
chr16	85590229	85590329	6518975	0	+	0.53	(0.523,0.58]	chr16	646396	335	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	2228	2	10.3277	10.4692	10.6107	7.62498e-7	6.6092e-10	7.94453e-4	1.01538e-6
chr17	7175057	7175155	6847821	0	-	0.44898	(0.419,0.45]	chr17	693457	2	INTRON	INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	0	2259	2	10.3932	10.4603	10.5274	3.65975e-6	3.61061e-9	0.00121739	2.86032e-6
chr17	7175155	7175253	6847822	0	-	0.459184	(0.45,0.485]	chr17	693457	3	INTRON	INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	0	2130	2	10.3696	10.40535	10.4411	1.62155e-6	1.08625e-9	9.73457e-4	1.38206e-6
chr4	887363	887462	2178476	0	-	0.585859	(0.58,1]	chr4	220626	17	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	1984	2	10.2948	10.3726	10.4504	2.19365e-7	5.10668e-11	5.79361e-4	2.94544e-7
chr17	7107668	7107751	6847707	0	-	0.53012	(0.523,0.58]	chr17	693411	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	2064	2	9.90738	10.33924	10.7711	3.59078e-6	1.3856e-10	0.00120797	4.91729e-7
chr14	89336154	89336254	6027464	0	-	0.49	(0.485,0.523]	chr14	591456	25	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	2071	2	10.0751	10.3381	10.6011	7.63441e-7	1.82596e-9	7.94453e-4	1.92869e-6
chr17	7176231	7176329	6847833	0	-	0.510204	(0.485,0.523]	chr17	693457	14	INTRON	INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	0	2008	2	10.317	10.335049999999999	10.3531	1.43071e-6	6.92403e-10	9.51831e-4	1.04762e-6
chr17	72553833	72553932	6963849	0	-	0.474747	(0.45,0.485]	chr17	710389	194	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	2118	2	9.7839	10.331499999999998	10.8791	6.60547e-6	1.90675e-10	0.00154818	5.33719e-7
chr16	85590329	85590429	6518976	0	+	0.51	(0.485,0.523]	chr16	646396	336	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	1999	2	10.2909	10.329550000000001	10.3682	1.51582e-6	6.56919e-10	9.58384e-4	1.01538e-6
chr17	7113517	7113616	6847769	0	-	0.393939	(0.39,0.419]	chr17	693423	43	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	1937	2	10.1375	10.2545	10.3715	5.59988e-6	2.76963e-9	0.00143454	2.4481e-6
chr4	887659	887758	2178479	0	-	0.525253	(0.523,0.58]	chr4	220626	20	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	1854	2	10.1702	10.222999999999999	10.2758	2.01543e-6	7.93173e-10	0.00103856	1.14753e-6
chr2	239345583	239345683	1392166	0	-	0.44	(0.419,0.45]	chr2	148752	211	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	1896	2	10.1626	10.21535	10.2681	7.53876e-6	5.37742e-9	0.00165942	3.6712e-6
chr6	166955274	166955366	3302046	0	-	0.630435	(0.58,1]	chr6	319751	2	SS5_PROX	SS5_PROX:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000358165.7:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	3947	2	8.22392	10.204509999999999	12.1851	2.45702e-7	1.76742e-9	1.22757e-4	4.13888e-5
chr13	26254103	26254192	5551186	0	+	0.573034	(0.523,0.58]	chr13	547911	1	UTR5	UTR5:EXON_MRNA	CDK8	ENSG00000132964.12	ENST00000536792.5:ENST00000381527.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	1808	2	10.1328	10.18035	10.2279	1.77475e-6	1.31046e-9	9.85957e-4	1.57204e-6
chr3	129394768	129394863	1911565	0	-	0.557895	(0.523,0.58]	chr3	194158	6	INTRON	INTRON	RPL32P3	ENSG00000251474.7	ENST00000510078.5:ENST00000507287.5:ENST00000687239.1:ENST00000514355.5:ENST00000507238.5:ENST00000515866.5:ENST00000499631.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	1801	2	9.97993	10.156414999999999	10.3329	1.40823e-6	2.23886e-9	9.51831e-4	2.18662e-6
chr13	50573698	50573797	5598362	0	+	0.393939	(0.39,0.419]	chr13	551685	400	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1:ENST00000484869.6	lncRNA	lncRNA	lncRNA	lncRNA	0	1826	2	10.026	10.1541	10.2822	4.16958e-6	8.47739e-9	0.00126679	4.74959e-6
chr19	2336714	2336814	7189488	0	+	0.6	(0.58,1]	chr19	731783	2	SS3_PROX	SS3_PROX:INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	1683	2	10.0974	10.1295	10.1616	3.07367e-7	2.00628e-10	6.84755e-4	5.33862e-7
chr7	6702290	6702389	3542736	0	-	0.494949	(0.485,0.523]	chr7	342318	15	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	0	1778	2	9.90784	10.127970000000001	10.3481	1.33587e-6	3.26645e-9	9.42471e-4	2.65187e-6
chr17	356196	356296	6821855	0	-	0.57	(0.523,0.58]	chr17	689641	32	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	0	1741	2	9.976	10.1142	10.2524	1.68161e-6	2.26994e-9	9.73457e-4	2.18662e-6
chr17	7176518	7176613	6847836	0	-	0.473684	(0.45,0.485]	chr17	693458	3	SS5_PROX	SS5_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	0	1733	2	10.0745	10.11255	10.1506	3.55415e-6	2.28811e-9	0.00120797	2.18662e-6
chr17	7113616	7113716	6847770	0	-	0.4	(0.39,0.419]	chr17	693424	1	SS5_PROX	SS5_PROX:INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	1727	2	9.88894	10.08517	10.2814	9.28265e-6	3.70976e-9	0.00182685	2.8754e-6
chr9	133915862	133915962	4429559	0	-	0.52	(0.485,0.523]	chr9	423310	541	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	1672	2	10.0194	10.0725	10.1256	2.75725e-6	1.53136e-9	0.00112239	1.74957e-6
chr9	4714087	4714185	4269911	0	-	0.44898	(0.419,0.45]	chr9	407900	6	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	0	1768	2	9.61356	10.06813	10.5227	2.22423e-5	2.38893e-9	0.00272839	2.23468e-6
chr20	63731420	63731520	7509353	0	+	0.45	(0.419,0.45]	chr20	783515	219	INTRON	INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	1753	2	9.56261	10.047854999999998	10.5331	2.45803e-5	2.31098e-9	0.00284582	2.18662e-6
chr8	38768595	38768695	3802241	0	+	0.51	(0.485,0.523]	chr8	365828	108	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	1640	2	9.95419	10.045195	10.1362	3.18251e-6	1.47585e-9	0.00116565	1.71473e-6
chr21	38808563	38808663	7620628	0	+	0.51	(0.485,0.523]	chr21	796141	3	SS5_PROX	SS5_PROX:INTRON	ETS2	ENSG00000157557.13	ENST00000360214.8:ENST00000665212.1:ENST00000667466.1:ENST00000360938.8:ENST00000432278.5:ENST00000666778.1:ENST00000653642.1	protein_coding	protein_coding	protein_coding	protein_coding	0	1916	2	9.30183	10.041465	10.7811	5.12373e-7	2.65248e-8	7.30832e-4	9.98819e-6
chr16	81626192	81626292	6509559	0	+	0.5	(0.485,0.523]	chr16	645926	41	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	1634	2	9.86812	10.019359999999999	10.1706	1.9763e-6	3.7495e-9	0.00102698	2.8754e-6
chr9	133915962	133916062	4429560	0	-	0.48	(0.45,0.485]	chr9	423310	542	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	1635	2	9.86521	10.010455	10.1557	2.98822e-6	6.02271e-9	0.00112879	3.90537e-6
chr16	89914667	89914761	6526323	0	+	0.542553	(0.523,0.58]	chr16	647716	12	UTR5	UTR5:EXON_MRNA:INTRON	ENSG00000267048:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000539976.1:ENST00000555427.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	0	1733	2	9.28461	9.997705	10.7108	1.39868e-5	1.71369e-10	0.00218388	5.04925e-7
chr16	85590429	85590529	6518977	0	+	0.48	(0.45,0.485]	chr16	646396	337	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	1598	2	9.92295	9.988225	10.0535	3.71737e-6	4.95326e-9	0.00122199	3.47159e-6
chr16	2165261	2165356	6372955	0	+	0.6	(0.58,1]	chr16	629424	9	INTRON	INTRON	TRAF7	ENSG00000131653.13	ENST00000565383.5:ENST00000569686.5:ENST00000326181.11:ENST00000567653.5:ENST00000564067.5:ENST00000567645.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	1522	2	9.76718	9.98589	10.2046	8.31416e-7	1.32467e-10	7.94453e-4	4.91729e-7
chr9	128808369	128808467	4248035	0	+	0.55102	(0.523,0.58]	chr9	404080	6	UTR3	UTR3:EXON_MRNA	TBC1D13	ENSG00000107021.16	ENST00000372648.10:ENST00000223865.8	protein_coding	protein_coding	protein_coding	protein_coding	0	1555	2	9.94813	9.965715	9.9833	3.03957e-6	2.50253e-9	0.00112905	2.31616e-6
chr17	77216256	77216353	6803137	0	+	0.525773	(0.523,0.58]	chr17	686684	24	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	0	1555	2	9.79338	9.948540000000001	10.1037	2.3329e-6	4.298e-9	0.00111233	3.1384e-6
chr16	89914288	89914383	6526319	0	+	0.568421	(0.523,0.58]	chr16	647716	8	UTR5	UTR5:EXON_MRNA:INTRON	ENSG00000267048:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000539976.1:ENST00000555427.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	0	1615	2	9.35807	9.942985	10.5279	1.19232e-5	3.26683e-10	0.00201313	6.40949e-7
chr19	2336514	2336614	7189486	0	+	0.48	(0.45,0.485]	chr19	731782	14	INTRON	INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	1543	2	9.67166	9.93573	10.1998	8.38597e-6	1.93574e-9	0.0017508	1.9703e-6
chr16	571060	571160	6368125	0	+	0.57	(0.523,0.58]	chr16	627949	3	SS5_PROX	SS5_PROX:INTRON	PIGQ	ENSG00000007541.17	ENST00000293874.2:ENST00000409527.6:ENST00000321878.10:ENST00000439574.1:ENST00000422307.6:ENST00000636657.1:ENST00000026218.9:ENST00000470411.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	1523	2	9.79561	9.923055	10.0505	2.6223e-6	4.26458e-9	0.00111692	3.1276e-6
chr11	68350819	68350918	4882466	0	+	0.575758	(0.523,0.58]	chr11	470548	22	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	1670	2	9.32727	9.916485	10.5057	9.61727e-7	2.17294e-8	8.32388e-4	8.66834e-6
chr2	38325607	38325707	1123816	0	-	0.49	(0.485,0.523]	chr2	123019	62	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	1502	2	9.906	9.91614	9.92628	3.53812e-6	3.06374e-9	0.00120797	2.56741e-6
chr17	7107584	7107668	6847706	0	-	0.464286	(0.45,0.485]	chr17	693411	2	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	3330	2	9.0639	9.915099999999999	10.7663	8.06434e-7	2.5003e-10	7.94453e-4	5.72821e-7
chr17	77215576	77215673	6803130	0	+	0.556701	(0.523,0.58]	chr17	686684	17	UTR3	UTR3:EXON_MRNA:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	0	1497	2	9.90321	9.91161	9.92001	3.4926e-6	2.92824e-9	0.00120797	2.50955e-6
chr16	2164976	2165071	6372952	0	+	0.610526	(0.58,1]	chr16	629424	6	INTRON	INTRON	TRAF7	ENSG00000131653.13	ENST00000565383.5:ENST00000569686.5:ENST00000326181.11:ENST00000567653.5:ENST00000564067.5:ENST00000567645.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	1449	2	9.64011	9.910005	10.1799	1.1443e-6	1.45759e-10	8.87062e-4	4.91729e-7
chr2	239345983	239346083	1392170	0	-	0.51	(0.485,0.523]	chr2	148752	215	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	1488	2	9.70993	9.901615	10.0933	5.44008e-6	1.71354e-9	0.0014098	1.88093e-6
chr7	138508704	138508804	3502488	0	+	0.47	(0.45,0.485]	chr7	337502	39	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	1504	2	9.81382	9.89863	9.98344	4.31731e-6	7.1665e-9	0.00128014	4.30599e-6
chr16	81627190	81627290	6509569	0	+	0.48	(0.45,0.485]	chr16	645926	51	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	1543	2	9.57231	9.889355	10.2064	2.68116e-6	1.61922e-8	0.00111692	7.13758e-6
chr17	72557724	72557823	6963888	0	-	0.464646	(0.45,0.485]	chr17	710389	233	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	1509	2	9.52198	9.88794	10.2539	1.15212e-5	1.61084e-9	0.00197933	1.81028e-6
chr3	129394673	129394768	1911564	0	-	0.578947	(0.523,0.58]	chr3	194158	5	INTRON	INTRON	RPL32P3	ENSG00000251474.7	ENST00000510078.5:ENST00000507287.5:ENST00000687239.1:ENST00000514355.5:ENST00000507238.5:ENST00000515866.5:ENST00000499631.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	1500	2	9.66474	9.88422	10.1037	2.3329e-6	6.73128e-9	0.00111233	4.21173e-6
chr22	28601754	28601854	7781048	0	-	0.45	(0.419,0.45]	chr22	815741	1588	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	0	1511	2	9.85298	9.883965	9.91495	1.22941e-5	2.00939e-8	0.00203716	8.29161e-6
chr20	63731320	63731420	7509352	0	+	0.46	(0.45,0.485]	chr20	783515	218	INTRON	INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	1530	2	9.40686	9.88303	10.3592	1.47008e-5	1.12549e-9	0.0022175	1.41061e-6
chr16	2165356	2165456	6372956	0	+	0.65	(0.58,1]	chr16	629425	1	SS3_PROX	SS3_PROX:INTRON	TRAF7	ENSG00000131653.13	ENST00000565383.5:ENST00000569686.5:ENST00000326181.11:ENST00000567653.5:ENST00000564067.5:ENST00000567645.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	1418	2	9.58971	9.876755	10.1638	1.29863e-6	1.55183e-10	9.26159e-4	4.95188e-7
chr16	2164786	2164881	6372950	0	+	0.642105	(0.58,1]	chr16	629424	4	INTRON	INTRON	TRAF7	ENSG00000131653.13	ENST00000565383.5:ENST00000569686.5:ENST00000326181.11:ENST00000567653.5:ENST00000564067.5:ENST00000567645.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	1411	2	9.5733	9.868549999999999	10.1638	1.35321e-6	1.55183e-10	9.42471e-4	4.95188e-7
chr13	98278298	98278398	5635014	0	+	0.41	(0.39,0.419]	chr13	553480	331	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	0	1478	2	9.82374	9.859950000000001	9.89616	9.14767e-6	1.62805e-8	0.00182087	7.13901e-6
chr10	103596622	103596722	4756048	0	-	0.46	(0.45,0.485]	chr10	454714	27	UTR3	UTR3:EXON_MRNA	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9	protein_coding	protein_coding	protein_coding	protein_coding	0	1477	2	9.68387	9.858835	10.0338	3.87692e-6	1.11164e-8	0.00122559	5.78004e-6
chr20	34471615	34471715	7461884	0	+	0.48	(0.45,0.485]	chr20	776788	1	SS5_PROX	SS5_PROX:INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000262650.10:ENST00000665346.1:ENST00000483727.5:ENST00000461661.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	1471	2	9.67429	9.852395	10.0305	3.90438e-6	1.14814e-8	0.00122559	5.9084e-6
chr2	11335101	11335201	1089306	0	-	0.49	(0.485,0.523]	chr2	118747	470	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	1441	2	9.7875	9.85037	9.91324	3.48226e-6	4.95972e-9	0.00120797	3.47159e-6
chr16	89914572	89914667	6526322	0	+	0.557895	(0.523,0.58]	chr16	647716	11	UTR5	UTR5:EXON_MRNA:INTRON	ENSG00000267048:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000539976.1:ENST00000555427.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	0	1526	2	9.21014	9.84442	10.4787	1.6439e-5	3.8858e-10	0.00233361	6.9426e-7
chr2	239346982	239347082	1392180	0	-	0.47	(0.45,0.485]	chr2	148752	225	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	1434	2	9.66741	9.838355	10.0093	8.46204e-6	3.69707e-9	0.00175845	2.8754e-6
chr14	89204035	89204135	6026135	0	-	0.5	(0.485,0.523]	chr14	591423	132	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000555010.1:ENST00000557718.5:ENST00000553353.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	1434	2	9.66598	9.829145	9.99231	2.92663e-6	7.55543e-9	0.00112869	4.38489e-6
chr16	14435883	14435976	6552195	0	-	0.526882	(0.523,0.58]	chr16	652241	3	UTR3	UTR3:EXON_MRNA	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	1409	2	9.75252	9.827865	9.90321	5.04186e-6	2.92824e-9	0.00136203	2.50955e-6
chr21	45134214	45134314	7629263	0	+	0.69	(0.58,1]	chr21	797547	1	SS3_PROX	SS3_PROX:INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5:ENST00000449478.1:ENST00000464215.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	1355	2	9.69533	9.822945	9.95056	9.96085e-7	3.53962e-10	8.39394e-4	6.67937e-7
chr16	89914194	89914288	6526318	0	+	0.5	(0.485,0.523]	chr16	647716	7	UTR5	UTR5:EXON_MRNA:INTRON	ENSG00000267048:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000539976.1:ENST00000555427.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	0	1525	2	9.12895	9.819825	10.5107	1.93012e-5	3.99157e-10	0.00252667	6.99714e-7
chr16	89304606	89304705	6659855	0	-	0.545455	(0.523,0.58]	chr16	666658	26	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	3074	2	9.08665	9.814475	10.5423	8.86928e-7	1.27386e-10	8.15133e-4	4.91729e-7
chr16	89914761	89914856	6526324	0	+	0.547368	(0.523,0.58]	chr16	647716	13	UTR5	UTR5:EXON_MRNA:INTRON	ENSG00000267048:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000539976.1:ENST00000555427.1:ENST00000639847.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	0	1518	2	9.11602	9.81316	10.5103	2.01555e-5	3.47523e-10	0.00260032	6.6324e-7
chr8	38768994	38769094	3802245	0	+	0.56	(0.523,0.58]	chr8	365828	112	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	1411	2	9.65984	9.80943	9.95902	3.20604e-6	6.8472e-9	0.00116565	4.21173e-6
chr9	133915663	133915762	4429557	0	-	0.484848	(0.45,0.485]	chr9	423310	539	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	1403	2	9.76052	9.802959999999999	9.8454	5.79481e-6	8.58124e-9	0.00146344	4.7523e-6
chr9	14792242	14792342	4279625	0	-	0.47	(0.45,0.485]	chr9	408902	1	SS5_PROX	SS5_PROX:INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7:ENST00000466679.1:ENST00000497634.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	3135	2	8.38202	9.79241	11.2028	3.14925e-7	2.56932e-9	6.84755e-4	2.34515e-6
chr18	13445827	13445925	7025034	0	+	0.561224	(0.523,0.58]	chr18	717583	16	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000610087.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	1528	2	9.20475	9.790075000000002	10.3754	1.28206e-6	3.31856e-8	9.21716e-4	1.14443e-5
chr21	44866346	44866445	7678505	0	-	0.494949	(0.485,0.523]	chr21	802773	3	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	6463	2	8.99631	9.784105	10.5719	8.62054e-8	3.22336e-10	3.65954e-4	6.40949e-7
chr16	2164501	2164596	6372947	0	+	0.621053	(0.58,1]	chr16	629424	1	INTRON	INTRON	TRAF7	ENSG00000131653.13	ENST00000565383.5:ENST00000569686.5:ENST00000326181.11:ENST00000567653.5:ENST00000564067.5:ENST00000567645.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	1324	2	9.53749	9.782644999999999	10.0278	1.48036e-6	2.62584e-10	9.54163e-4	5.72821e-7
chr2	235511734	235511834	1062713	0	+	0.4	(0.39,0.419]	chr2	115651	165	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	1492	2	9.32526	9.77993	10.2346	4.5945e-6	8.05634e-8	0.00130461	2.06885e-5
chr8	38768695	38768794	3802242	0	+	0.454545	(0.45,0.485]	chr8	365828	109	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	1365	2	9.74002	9.7649	9.78978	6.52335e-6	9.19673e-9	0.0015378	4.99856e-6
chr21	42848829	42848928	7675460	0	-	0.656566	(0.58,1]	chr21	802287	52	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	5	6034	2	8.45798	9.76369	11.0694	3.06175e-8	4.19542e-12	2.36909e-4	5.03289e-8
chr17	7176035	7176133	6847831	0	-	0.5	(0.485,0.523]	chr17	693457	12	INTRON	INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	1	2909	2	8.59501	9.751505	10.908	3.86707e-7	8.10677e-10	7.28156e-4	1.14753e-6
chr17	72554032	72554132	6963851	0	-	0.54	(0.523,0.58]	chr17	710389	196	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	2887	2	8.91533	9.739815	10.5643	8.44821e-7	2.33447e-10	7.94453e-4	5.72821e-7
chr17	7175742	7175840	6847828	0	-	0.5	(0.485,0.523]	chr17	693457	9	INTRON	INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	1	2879	2	8.58072	9.736609999999999	10.8925	4.00229e-7	8.52208e-10	7.28156e-4	1.18285e-6
chr16	2165456	2165556	6372957	0	+	0.6	(0.58,1]	chr16	629425	2	SS3_PROX	SS3_PROX:INTRON	TRAF7	ENSG00000131653.13	ENST00000565383.5:ENST00000569686.5:ENST00000326181.11:ENST00000567653.5:ENST00000564067.5:ENST00000567645.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	1289	2	9.4296	9.7366	10.0436	1.93955e-6	2.47062e-10	0.0010171	5.72821e-7
chr6	144631164	144631264	3023379	0	+	0.47	(0.45,0.485]	chr6	295440	472	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000367526.8	protein_coding	protein_coding	protein_coding	protein_coding	0	1360	2	9.53576	9.73526	9.93476	4.78983e-6	1.83123e-8	0.00133542	7.76634e-6
chr13	50573797	50573897	5598363	0	+	0.37	(0.36,0.39]	chr13	551685	401	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1:ENST00000484869.6	lncRNA	lncRNA	lncRNA	lncRNA	0	1390	2	9.44692	9.73096	10.015	6.77483e-6	5.3582e-8	0.00157282	1.56042e-5
chr17	72557524	72557624	6963886	0	-	0.48	(0.45,0.485]	chr17	710389	231	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	1348	2	9.35494	9.72462	10.0943	1.64059e-5	2.77052e-9	0.00233274	2.4481e-6
chr1	43559622	43559722	107035	0	+	0.56	(0.523,0.58]	chr1	13192	53	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	1313	2	9.72192	9.72328	9.72464	5.39104e-6	5.46301e-9	0.00140527	3.6847e-6
chr17	7109088	7109188	6847724	0	-	0.53	(0.523,0.58]	chr17	693422	2	SS3_PROX	SS3_PROX:INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	1332	2	9.34475	9.719925	10.0951	1.22737e-5	1.49532e-9	0.00203716	1.72009e-6
chr1	1052593	1052689	1290	0	+	0.5	(0.485,0.523]	chr1	283	7	EXON_MRNA	EXON_MRNA:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	3552	2	8.63981	9.718805	10.7978	5.31159e-7	1.46034e-10	7.30832e-4	4.91729e-7
chr3	129394863	129394958	1911566	0	-	0.578947	(0.523,0.58]	chr3	194158	7	INTRON	INTRON	RPL32P3	ENSG00000251474.7	ENST00000510078.5:ENST00000507287.5:ENST00000687239.1:ENST00000514355.5:ENST00000507238.5:ENST00000515866.5:ENST00000499631.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	1339	2	9.42583	9.70628	9.98673	3.01672e-6	1.54438e-8	0.00112905	6.93507e-6
chr12	76068742	76068825	5455904	0	-	0.46988	(0.45,0.485]	chr12	536730	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	1307	2	9.69338	9.703434999999999	9.71349	7.67262e-6	1.07653e-8	0.00168059	5.66765e-6
chr14	68898881	68898980	5999328	0	-	0.606061	(0.58,1]	chr14	588704	48	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	1293	2	9.40037	9.700585	10.0008	4.61436e-7	2.93529e-9	7.30832e-4	2.50955e-6
chr8	38769194	38769294	3802247	0	+	0.45	(0.419,0.45]	chr8	365828	114	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	1328	2	9.60716	9.692555	9.77795	1.6102e-5	4.36953e-8	0.00231154	1.38461e-5
chr16	81679327	81679426	6510104	0	+	0.484848	(0.45,0.485]	chr16	645979	3	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	0	1324	2	9.40584	9.67996	9.95408	4.59643e-6	2.83416e-8	0.00130461	1.03475e-5
chr7	47474808	47474908	3588556	0	-	0.47	(0.45,0.485]	chr7	346123	217	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	1292	2	9.59024	9.679175	9.76811	6.83123e-6	1.52432e-8	0.00157697	6.89905e-6
chr17	7176613	7176685	6847837	0	-	0.5	(0.485,0.523]	chr17	693459	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1:ENST00000573596.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	1273	2	9.52612	9.67888	9.83164	8.13292e-6	4.25566e-9	0.00172217	3.1276e-6
chr17	7175937	7176035	6847830	0	-	0.459184	(0.45,0.485]	chr17	693457	11	INTRON	INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	1	2794	2	8.54375	9.671225	10.7987	7.52103e-7	1.48045e-9	7.94453e-4	1.71473e-6
chr2	186213520	186213619	1339440	0	-	0.464646	(0.45,0.485]	chr2	142319	345	INTRON	INTRON	LINC01473	ENSG00000237877.7	ENST00000658984.1:ENST00000658990.1:ENST00000655126.1:ENST00000667839.1:ENST00000670612.1:ENST00000668985.1:ENST00000661574.1:ENST00000666677.1:ENST00000665629.1:ENST00000419719.2:ENST00000667056.1:ENST00000671599.1	lncRNA	lncRNA	lncRNA	lncRNA	0	1304	2	9.45419	9.67111	9.88803	5.29158e-6	2.40927e-8	0.00140397	9.34511e-6
chr11	68421696	68421795	4883187	0	+	0.565657	(0.523,0.58]	chr11	470622	48	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	1411	2	9.07085	9.669425	10.268	1.62474e-6	5.26409e-8	9.73457e-4	1.55923e-5
chr14	95414637	95414736	6048923	0	-	0.545455	(0.523,0.58]	chr14	593438	75	UTR3	UTR3:EXON_MRNA	SYNE3	ENSG00000176438.13	ENST00000682763.1:ENST00000557275.5	protein_coding	protein_coding	protein_coding	protein_coding	0	1261	2	9.62824	9.66699	9.70574	6.61661e-6	5.83508e-9	0.00154818	3.81314e-6
chr21	45133782	45133882	7629258	0	+	0.72	(0.58,1]	chr21	797545	1	SS5_PROX	SS5_PROX:INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5:ENST00000449478.1:ENST00000464215.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	1211	2	9.53507	9.661069999999999	9.78707	1.48936e-6	6.65046e-10	9.54163e-4	1.01538e-6
chr8	38769693	38769793	3802252	0	+	0.52	(0.485,0.523]	chr8	365828	119	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	1265	2	9.57282	9.659855	9.74689	5.0169e-6	1.04265e-8	0.00135941	5.52392e-6
chr20	63732518	63732618	7509364	0	+	0.47	(0.45,0.485]	chr20	783515	230	INTRON	INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	1328	2	9.08865	9.653375	10.2181	2.87513e-5	1.81935e-9	0.00301898	1.92869e-6
chr16	571547	571643	6368130	0	+	0.59375	(0.58,1]	chr16	627950	4	INTRON	INTRON	PIGQ	ENSG00000007541.17	ENST00000293874.2:ENST00000409527.6:ENST00000321878.10:ENST00000439574.1:ENST00000422307.6:ENST00000636657.1:ENST00000026218.9:ENST00000470411.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	1210	2	9.52623	9.643605	9.76098	8.44483e-7	1.8126e-9	7.94453e-4	1.92869e-6
chr20	44404867	44404965	7482964	0	+	0.530612	(0.523,0.58]	chr20	779645	16	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	2698	2	8.43826	9.64233	10.8464	4.52591e-7	1.25531e-9	7.30832e-4	1.53374e-6
chr17	7107501	7107584	6847705	0	-	0.46988	(0.45,0.485]	chr17	693411	1	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	2725	2	8.69512	9.63466	10.5742	1.21862e-6	8.82956e-10	9.12923e-4	1.2056e-6
chr8	127849939	127850038	3918342	0	+	0.545455	(0.523,0.58]	chr8	374180	33	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000655594.1	lncRNA	lncRNA	lncRNA	lncRNA	1	3329	2	7.78385	9.634125000000001	11.4844	3.58624e-6	1.10393e-11	0.00120797	1.03e-7
chr2	239345483	239345583	1392165	0	-	0.59	(0.58,1]	chr2	148752	210	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	1209	2	9.43959	9.6297	9.81981	7.28253e-7	2.52617e-9	7.94453e-4	2.31836e-6
chr2	11483679	11483778	719697	0	+	0.636364	(0.58,1]	chr2	84084	9	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000628795.2	protein_coding	protein_coding	protein_coding	protein_coding	1	2491	2	8.431	9.6265	10.822	5.75062e-8	2.38087e-10	3.02914e-4	5.72821e-7
chr16	89304210	89304309	6659851	0	-	0.616162	(0.58,1]	chr16	666658	22	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	3944	2	8.19625	9.624875	11.0535	3.18898e-8	3.4508e-11	2.36909e-4	2.22903e-7
chr16	81678928	81679028	6510100	0	+	0.48	(0.45,0.485]	chr16	645978	3	SS5_PROX	SS5_PROX:INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	0	1278	2	9.28522	9.614395	9.94357	4.70062e-6	4.24679e-8	0.00132193	1.35082e-5
chr8	12722698	12722797	3938955	0	-	0.414141	(0.39,0.419]	chr8	376543	9	UTR3	UTR3:EXON_MRNA	LONRF1	ENSG00000154359.13	ENST00000398246.8:ENST00000526680.5:ENST00000527055.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	1407	2	8.96119	9.613395	10.2656	4.31332e-6	2.5635e-7	0.00128014	4.26254e-5
chr2	239346882	239346982	1392179	0	-	0.47	(0.45,0.485]	chr2	148752	224	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	1221	2	9.42208	9.605855	9.78963	1.42351e-5	7.7771e-9	0.0021856000000000002	4.45779e-6
chr1	43559821	43559921	107037	0	+	0.52	(0.485,0.523]	chr1	13192	55	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	1207	2	9.58399	9.60144	9.61889	7.16673e-6	8.89178e-9	0.00161747	4.88911e-6
chr20	63732119	63732218	7509360	0	+	0.565657	(0.523,0.58]	chr20	783515	226	INTRON	INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	1209	2	9.32588	9.5967	9.86752	1.27874e-5	3.31736e-9	0.00208024	2.66573e-6
chr18	13445338	13445436	7025029	0	+	0.55102	(0.523,0.58]	chr18	717583	11	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000610087.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	1285	2	9.14988	9.59609	10.0423	2.67017e-6	4.00998e-8	0.00111692	1.30011e-5
chr20	63732418	63732518	7509363	0	+	0.6	(0.58,1]	chr20	783515	229	INTRON	INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	1158	2	9.37924	9.59245	9.80566	2.19987e-6	6.1908e-10	0.00109561	9.99731e-7
chr2	39474616	39474706	765379	0	+	0.433333	(0.419,0.45]	chr2	88616	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MAP4K3-DT	ENSG00000231312.8	ENST00000659562.1:ENST00000426083.5:ENST00000667600.1:ENST00000443038.1:ENST00000451547.2:ENST00000671403.1:ENST00000658319.1:ENST00000445520.7:ENST00000658048.1:ENST00000422128.6:ENST00000670934.1:ENST00000449569.6:ENST00000425775.2:ENST00000662313.1:ENST00000658057.1:ENST00000668952.1:ENST00000446698.5	lncRNA	lncRNA	lncRNA	lncRNA	0	1312	2	9.12737	9.585335	10.0433	9.54374e-6	1.97001e-7	0.00184506	3.60801e-5
chr2	239345683	239345783	1392167	0	-	0.5	(0.485,0.523]	chr2	148752	212	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	1173	2	9.41827	9.56137	9.70447	1.02911e-5	6.61295e-9	0.00188384	4.19101e-6
chr12	132536153	132536252	5352977	0	+	0.464646	(0.45,0.485]	chr12	523670	78	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	1187	2	9.28453	9.556765	9.829	1.90352e-5	6.80783e-9	0.00250658	4.21173e-6
chr7	6702389	6702487	3542737	0	-	0.520408	(0.485,0.523]	chr7	342318	16	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	0	1181	2	9.39008	9.550004999999999	9.70993	5.44008e-6	1.95813e-8	0.0014098	8.14849e-6
chr2	239290570	239290670	1391614	0	-	0.57	(0.523,0.58]	chr2	148740	390	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	1159	2	9.50667	9.54546	9.58425	8.62733e-6	8.90803e-9	0.00177214	4.88911e-6
chr2	239346482	239346582	1392175	0	-	0.44	(0.419,0.45]	chr2	148752	220	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	1188	2	9.44766	9.542010000000001	9.63636	3.07877e-5	3.98494e-8	0.00310406	1.297e-5
chr2	239346582	239346682	1392176	0	-	0.38	(0.36,0.39]	chr2	148752	221	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	1173	2	9.30522	9.526520000000001	9.74782	2.86822e-5	2.03753e-8	0.00301884	8.34621e-6
chr19	16368556	16368656	7343615	0	-	0.51	(0.485,0.523]	chr19	760668	62	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	1145	2	9.50902	9.52345	9.53788	7.92662e-6	1.29961e-8	0.00170687	6.3082e-6
chr13	97339026	97339126	5631974	0	+	0.39	(0.36,0.39]	chr13	553188	42	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	1177	2	9.23005	9.52291	9.81577	3.33829e-5	1.63672e-8	0.00320976	7.15655e-6
chr2	239346382	239346482	1392174	0	-	0.41	(0.39,0.419]	chr2	148752	219	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	1182	2	9.1554	9.516725000000001	9.87805	4.07954e-5	1.36662e-8	0.00354247	6.50195e-6
chr17	72553433	72553533	6963845	0	-	0.55	(0.523,0.58]	chr17	710389	190	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	2493	2	8.77444	9.51482	10.2552	1.67108e-6	3.83949e-10	9.73457e-4	6.93362e-7
chr2	10368277	10368377	719082	0	+	0.49	(0.485,0.523]	chr2	84032	135	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	1185	2	9.14973	9.507615000000001	9.8655	3.86727e-6	4.46905e-8	0.00122559	1.4035e-5
chr2	239345883	239345983	1392169	0	-	0.46	(0.45,0.485]	chr2	148752	214	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	1138	2	9.4246	9.50742	9.59024	1.41594e-5	1.52432e-8	0.00218388	6.89905e-6
chr17	72557624	72557724	6963887	0	-	0.48	(0.45,0.485]	chr17	710389	232	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	1168	2	9.06622	9.503625	9.94103	3.01377e-5	4.65903e-9	0.00309439	3.35822e-6
chr20	62957780	62957880	7508274	0	+	0.6	(0.58,1]	chr20	783179	2	SS5_PROX	SS5_PROX:INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	5832	2	9.40246	9.502865	9.60327	7.84248e-9	5.53724e-12	1.39828e-4	6.19971e-8
chr2	3221639	3221739	1080317	0	-	0.52	(0.485,0.523]	chr2	117609	70	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000482570.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	1168	2	8.98516	9.49628	10.0074	2.63434e-5	2.31076e-9	0.00292399	2.18662e-6
chr7	216560	216659	3305820	0	+	0.535354	(0.523,0.58]	chr7	320161	72	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	1119	2	9.44806	9.49516	9.54226	9.80276e-6	1.03085e-8	0.001858	5.47873e-6
chr1	91729204	91729304	526239	0	-	0.52	(0.485,0.523]	chr1	61872	10	INTRON	INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000468996.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	1147	2	9.07508	9.49352	9.91196	2.16894e-5	3.22006e-9	0.0027064	2.63841e-6
chr20	58695191	58695291	7498635	0	+	0.5	(0.485,0.523]	chr20	782002	2	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	1114	2	9.39518	9.487895	9.58061	1.08223e-5	1.01499e-8	0.00194513	5.41154e-6
chr12	109556637	109556734	5494677	0	-	0.515464	(0.485,0.523]	chr12	540589	31	UTR3	UTR3:EXON_MRNA	MMAB	ENSG00000139428.12	ENST00000545712.7:ENST00000540016.5:ENST00000537496.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	1291	2	8.77337	9.486184999999999	10.199	1.85624e-6	1.61082e-7	0.00100747	3.15304e-5
chr20	21238388	21238487	7448899	0	+	0.454545	(0.45,0.485]	chr20	775009	52	INTRON	INTRON	KIZ	ENSG00000088970.16	ENST00000619574.4:ENST00000620891.4:ENST00000611685.4:ENST00000616848.4:ENST00000619189.5:ENST00000616679.4:ENST00000619179.4:ENST00000621366.1:ENST00000451772.5:ENST00000419359.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	1215	2	8.98958	9.485655000000001	9.98173	4.3331e-6	1.139e-7	0.00128014	2.56766e-5
chr4	887264	887363	2178475	0	-	0.585859	(0.58,1]	chr4	220626	16	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	2651	2	8.18722	9.484960000000001	10.7827	2.90236e-7	1.40257e-11	6.80894e-4	1.23977e-7
chr17	57440389	57440489	6761614	0	+	0.52	(0.485,0.523]	chr17	682129	79	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	1109	2	9.18088	9.468325	9.75577	1.72459e-5	5.53625e-9	0.00238362	3.70101e-6
chr20	46648910	46649010	7568981	0	-	0.48	(0.45,0.485]	chr20	790913	348	INTRON	INTRON	SLC13A3	ENSG00000158296.14	ENST00000290317.9:ENST00000279027.9:ENST00000472148.5:ENST00000413164.6:ENST00000468915.5:ENST00000372121.5:ENST00000417157.2	protein_coding	protein_coding	protein_coding	protein_coding	0	1126	2	9.08546	9.46367	9.84188	2.89441e-5	6.51746e-9	0.00303566	4.14614e-6
chr14	104872355	104872455	5925935	0	+	0.65	(0.58,1]	chr14	579942	34	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	1144	2	8.775	9.463049999999999	10.1511	9.85815e-6	1.62983e-10	0.001858	4.9768e-7
chr14	104872155	104872255	5925933	0	+	0.62	(0.58,1]	chr14	579942	32	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	1156	2	8.72917	9.460735	10.1923	1.10352e-5	1.38904e-10	0.00195192	4.91729e-7
chr20	63732318	63732418	7509362	0	+	0.6	(0.58,1]	chr20	783515	228	INTRON	INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	2193	2	8.62439	9.458145	10.2919	2.20962e-7	1.12315e-10	5.79361e-4	4.49116e-7
chr19	2336415	2336514	7189485	0	+	0.454545	(0.45,0.485]	chr19	731782	13	INTRON	INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	1101	2	9.25368	9.45553	9.65738	2.03152e-5	1.21554e-8	0.00260584	6.07577e-6
chr8	66669091	66669190	3836794	0	+	0.444444	(0.419,0.45]	chr8	368383	10	INTRON	INTRON	C8orf44	ENSG00000288596.2	ENST00000521113.1:ENST00000661636.1:ENST00000521889.5	lncRNA	lncRNA	lncRNA	lncRNA	0	1138	2	9.25839	9.45318	9.64797	2.07894e-5	1.30774e-7	0.0026463	2.78013e-5
chr17	7175253	7175351	6847823	0	-	0.520408	(0.485,0.523]	chr17	693457	4	INTRON	INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	1	2355	2	8.28499	9.446394999999999	10.6078	7.52182e-7	2.39507e-9	7.94453e-4	2.23468e-6
chr16	89914005	89914099	6526316	0	+	0.468085	(0.45,0.485]	chr16	647716	5	UTR5	UTR5:EXON_MRNA:INTRON	ENSG00000267048:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000539976.1:ENST00000555427.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	0	1264	2	8.54263	9.442665000000002	10.3427	8.97789e-5	1.19065e-9	0.00525516	1.48123e-6
chr2	3221340	3221440	1080314	0	-	0.53	(0.523,0.58]	chr2	117609	67	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000482570.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	1103	2	8.99158	9.43379	9.876	2.63706e-5	3.22052e-9	0.00292399	2.63841e-6
chr7	47351933	47352033	3587310	0	-	0.47	(0.45,0.485]	chr7	346030	52	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	1076	2	9.24229	9.423860000000001	9.60543	2.08087e-5	1.44824e-8	0.0026463	6.70045e-6
chr20	64021568	64021666	7510617	0	+	0.520408	(0.485,0.523]	chr20	783726	44	INTRON	INTRON	PRPF6	ENSG00000101161.8	ENST00000266079.5	protein_coding	protein_coding	protein_coding	protein_coding	0	1062	2	9.29893	9.41877	9.53861	1.33449e-5	1.17341e-8	0.00211935	5.98212e-6
chr7	75934110	75934210	3396796	0	+	0.45	(0.419,0.45]	chr7	328054	108	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000449920.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	1121	2	9.15791	9.417665	9.67742	1.96209e-5	1.7908e-7	0.00254981	3.39455e-5
chr14	104872255	104872355	5925934	0	+	0.65	(0.58,1]	chr14	579942	33	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	1079	2	8.775	9.401399999999999	10.0278	9.85815e-6	2.62584e-10	0.001858	5.72821e-7
chr2	235512034	235512133	1062716	0	+	0.444444	(0.419,0.45]	chr2	115651	168	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	3003	2	8.16224	9.39282	10.6234	4.82349e-6	1.73208e-9	0.00133542	1.88893e-6
chr3	32829629	32829729	1438988	0	+	0.46	(0.45,0.485]	chr3	153401	103	INTRON	INTRON	TRIM71	ENSG00000206557.6	ENST00000383763.6	protein_coding	protein_coding	protein_coding	protein_coding	0	1051	2	9.38838	9.38993	9.39148	1.51867e-5	3.00524e-8	0.00223783	1.07159e-5
chr8	127849739	127849839	3918340	0	+	0.61	(0.58,1]	chr8	374180	31	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000655594.1	lncRNA	lncRNA	lncRNA	lncRNA	2	2837	2	8.3404	9.389050000000001	10.4377	1.52718e-7	5.2614e-11	4.83614e-4	2.94544e-7
chr16	22423813	22423913	6566802	0	-	0.49	(0.485,0.523]	chr16	655121	12	INTRON	INTRON	CDR2:RRN3P3	ENSG00000140743.8:ENSG00000257122.5	ENST00000564542.5:ENST00000563573.5:ENST00000569045.1:ENST00000551766.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	0	1092	2	8.83309	9.386775	9.94046	3.65595e-5	2.91644e-9	0.00333593	2.50955e-6
chr20	8493738	8493838	7430205	0	+	0.52	(0.485,0.523]	chr20	773698	1217	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	1045	2	9.29554	9.38437	9.4732	9.12903e-6	2.71042e-8	0.00182087	1.00932e-5
chr1	1052689	1052786	1291	0	+	0.515464	(0.485,0.523]	chr1	283	8	EXON_MRNA	EXON_MRNA:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	2761	2	8.1948	9.38075	10.5667	1.42503e-6	3.2821e-10	9.51831e-4	6.40949e-7
chr17	77216159	77216256	6803136	0	+	0.515464	(0.485,0.523]	chr17	686684	23	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	0	1033	2	9.36627	9.375535	9.3848	1.10699e-5	2.12534e-8	0.00195418	8.53931e-6
chr12	132536451	132536551	5352980	0	+	0.43	(0.419,0.45]	chr12	523670	81	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	1056	2	9.20637	9.3702	9.53403	4.93148e-5	5.50207e-8	0.00386319	1.58177e-5
chr5	1465291	1465387	2609376	0	-	0.510417	(0.485,0.523]	chr5	259790	11	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000503252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	1344	2	8.35641	9.370055	10.3837	1.23476e-6	6.55004e-7	9.15144e-4	7.93487e-5
chr17	81074672	81074772	6813767	0	+	0.57	(0.523,0.58]	chr17	688114	105	INTRON	INTRON	BAIAP2	ENSG00000175866.16	ENST00000321280.11:ENST00000576470.5:ENST00000575750.5:ENST00000428708.7:ENST00000572329.5:ENST00000575989.5:ENST00000570913.5:ENST00000575712.5:ENST00000575245.5:ENST00000321300.10:ENST00000435091.7:ENST00000573894.5:ENST00000571530.5:ENST00000572918.5:ENST00000573017.5:ENST00000575958.5:ENST00000573659.5:ENST00000572073.5:ENST00000573677.5:ENST00000574804.5:ENST00000576364.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	1035	2	9.24784	9.367615	9.48739	8.99755e-6	2.8597e-8	0.00181474	1.03508e-5
chr7	47474708	47474808	3588555	0	-	0.47	(0.45,0.485]	chr7	346123	216	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	1036	2	9.32248	9.365945	9.40941	1.46218e-5	3.74851e-8	0.00221308	1.23683e-5
chr17	7109486	7109584	6847728	0	-	0.602041	(0.58,1]	chr17	693423	2	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	985	2	9.24653	9.3636	9.48067	3.06375e-6	2.15841e-9	0.00113331	2.14495e-6
chr12	132531673	132531773	5352932	0	+	0.61	(0.58,1]	chr12	523670	33	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	998	2	9.17578	9.355425	9.53507	1.48936e-6	6.91554e-9	9.54163e-4	4.21173e-6
chr19	941820	941920	7185264	0	+	0.62	(0.58,1]	chr19	730741	87	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	1005	2	9.10623	9.35146	9.59669	1.27609e-6	9.00908e-9	9.21716e-4	4.91246e-6
chr1	30933442	30933542	434608	0	-	0.53	(0.523,0.58]	chr1	51445	1	SS3_PROX	SS3_PROX:INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000530669.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	1040	2	9.08188	9.346205000000001	9.61053	6.87757e-6	5.06799e-8	0.00157697	1.5336e-5
chr16	2165656	2165756	6372959	0	+	0.65	(0.58,1]	chr16	629425	4	SS3_PROX	SS3_PROX:INTRON	TRAF7	ENSG00000131653.13	ENST00000565383.5:ENST00000569686.5:ENST00000326181.11:ENST00000567653.5:ENST00000564067.5:ENST00000567645.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	975	2	9.09051	9.341245	9.59198	4.51695e-6	1.40839e-9	0.00130045	1.66573e-6
chr15	60542509	60542608	6284944	0	-	0.575758	(0.523,0.58]	chr15	619503	103	INTRON	INTRON	RORA	ENSG00000069667.16	ENST00000335670.11:ENST00000261523.9:ENST00000309157.8:ENST00000449337.6:ENST00000551975.5:ENST00000560004.5:ENST00000559343.1:ENST00000558234.1:ENST00000557822.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	1113	2	8.76793	9.339465	9.911	3.56237e-6	1.48593e-7	0.00120797	2.99526e-5
chr19	2336614	2336714	7189487	0	+	0.54	(0.523,0.58]	chr19	731783	1	SS3_PROX	SS3_PROX:INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	1007	2	9.12851	9.339365	9.55022	1.96179e-5	1.00269e-8	0.00254981	5.38014e-6
chr12	53412909	53413008	5236093	0	+	0.434343	(0.419,0.45]	chr12	508911	18	UTR3	UTR3:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	1	2370	2	7.94157	9.337135	10.7327	2.43407e-6	2.93945e-8	0.00111278	1.05938e-5
chr11	61271960	61272060	5041295	0	-	0.36	(0.33,0.36]	chr11	488755	2	SS3_PROX	SS3_PROX:INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10:ENST00000535710.1:ENST00000398808.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	1032	2	9.16432	9.336120000000001	9.50792	1.29364e-5	9.49959e-8	0.00209785	2.2598e-5
chr18	13445534	13445631	7025031	0	+	0.453608	(0.45,0.485]	chr18	717583	13	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000610087.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	1047	2	9.03891	9.33593	9.63295	9.10463e-6	9.66614e-8	0.00182087	2.27684e-5
chr17	7108988	7109088	6847723	0	-	0.5	(0.485,0.523]	chr17	693422	1	SS3_PROX	SS3_PROX:INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	1025	2	8.92552	9.33374	9.74196	2.99609e-5	5.80766e-9	0.003085	3.81005e-6
chr3	48426027	48426124	1766694	0	-	0.515464	(0.485,0.523]	chr3	182283	3	INTRON	INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	1011	2	9.00901	9.330145	9.65128	2.50203e-5	7.94974e-9	0.00286113	4.51057e-6
chr22	28918480	28918580	7705626	0	+	0.52	(0.485,0.523]	chr22	806321	6	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7:ENST00000402174.5	protein_coding	protein_coding	protein_coding	protein_coding	0	998	2	9.18687	9.32866	9.47045	1.70232e-5	1.48452e-8	0.00237123	6.84941e-6
chr7	129832393	129832491	3706517	0	-	0.510204	(0.485,0.523]	chr7	356184	18	UTR3	UTR3:EXON_MRNA	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1	protein_coding	protein_coding	protein_coding	protein_coding	0	1118	2	8.69907	9.322230000000001	9.94539	3.24471e-6	2.07137e-7	0.00116565	3.72063e-5
chrX	123864721	123864820	7946327	0	+	0.474747	(0.45,0.485]	chrX	831426	38	INTRON	INTRON	XIAP	ENSG00000101966.13	ENST00000422098.5:ENST00000481776.5:ENST00000434753.7:ENST00000497906.5:ENST00000468691.5:ENST00000430625.1:ENST00000371199.8:ENST00000497640.1:ENST00000355640.3:ENST00000468503.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	1030	2	9.05375	9.32009	9.58643	1.00494e-5	9.19998e-8	0.00187093	2.22053e-5
chr16	571355	571451	6368128	0	+	0.604167	(0.58,1]	chr16	627950	2	INTRON	INTRON	PIGQ	ENSG00000007541.17	ENST00000293874.2:ENST00000409527.6:ENST00000321878.10:ENST00000439574.1:ENST00000422307.6:ENST00000636657.1:ENST00000026218.9:ENST00000470411.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	969	2	9.16502	9.31786	9.4707	1.75e-6	7.2046e-9	9.85957e-4	4.30599e-6
chr2	239346782	239346882	1392178	0	-	0.49	(0.485,0.523]	chr2	148752	223	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	990	2	9.16883	9.31684	9.46485	1.77027e-5	1.51343e-8	0.00242017	6.8882e-6
chr1	91729104	91729204	526238	0	-	0.51	(0.485,0.523]	chr1	61872	9	INTRON	INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000468996.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	1052	2	8.70123	9.313755	9.92628	4.85198e-5	3.06374e-9	0.00383774	2.56741e-6
chr20	63733018	63733118	7509369	0	+	0.51	(0.485,0.523]	chr20	783516	4	SS3_PROX	SS3_PROX:INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	2603	2	7.58563	9.305265	11.0249	5.46775e-6	6.58779e-11	0.00141287	3.16058e-7
chr21	45133882	45133982	7629259	0	+	0.72	(0.58,1]	chr21	797545	2	SS5_PROX	SS5_PROX:INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5:ENST00000449478.1:ENST00000464215.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	948	2	9.1069	9.305264999999999	9.50363	4.3368e-6	1.97658e-9	0.00128014	1.99975e-6
chr7	47474108	47474208	3588549	0	-	0.41	(0.39,0.419]	chr7	346123	210	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	1013	2	9.15975	9.30278	9.44581	2.2755e-5	1.36527e-7	0.00276344	2.8448e-5
chr3	129394958	129395052	1911567	0	-	0.606383	(0.58,1]	chr3	194158	8	INTRON	INTRON	RPL32P3	ENSG00000251474.7	ENST00000510078.5:ENST00000507287.5:ENST00000687239.1:ENST00000514355.5:ENST00000507238.5:ENST00000515866.5:ENST00000499631.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	945	2	9.24894	9.29634	9.34374	2.40392e-6	5.23356e-9	0.00111233	3.62613e-6
chr21	43750745	43750845	7624124	0	+	0.58	(0.523,0.58]	chr21	796772	2	SS5_PROX	SS5_PROX:INTRON	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000498040.5:ENST00000481512.5:ENST00000490666.5:ENST00000467908.1:ENST00000343528.10:ENST00000398078.7:ENST00000468392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	1109	2	8.63938	9.29569	9.952	3.25579e-6	2.30143e-7	0.00116565	3.99706e-5
chr21	45134082	45134182	7629261	0	+	0.68	(0.58,1]	chr21	797545	4	SS5_PROX	SS5_PROX:INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5:ENST00000449478.1:ENST00000464215.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	938	2	9.16125	9.292940000000002	9.42463	3.78865e-6	2.67504e-9	0.00122199	2.41273e-6
chr2	186357952	186358052	1340886	0	-	0.54	(0.523,0.58]	chr2	142335	317	INTRON	INTRON	LINC01473	ENSG00000237877.7	ENST00000667056.1:ENST00000671599.1	lncRNA	lncRNA	lncRNA	lncRNA	0	993	2	9.08554	9.292505	9.49947	8.76379e-6	5.00457e-8	0.00179191	1.51714e-5
chr12	132535854	132535954	5352974	0	+	0.53	(0.523,0.58]	chr12	523670	75	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	974	2	9.04858	9.28873	9.52888	2.33182e-5	1.07991e-8	0.00277911	5.66771e-6
chr16	571160	571260	6368126	0	+	0.6	(0.58,1]	chr16	627949	4	SS5_PROX	SS5_PROX:INTRON	PIGQ	ENSG00000007541.17	ENST00000293874.2:ENST00000409527.6:ENST00000321878.10:ENST00000439574.1:ENST00000422307.6:ENST00000636657.1:ENST00000026218.9:ENST00000470411.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	1974	2	8.04289	9.282995	10.5231	1.22929e-7	1.06895e-9	4.38355e-4	1.37043e-6
chr7	66662879	66662979	3382033	0	+	0.54	(0.523,0.58]	chr7	326325	79	INTRON	INTRON	ENSG00000226824	ENSG00000226824.8	ENST00000693151.1:ENST00000656515.2:ENST00000448096.1:ENST00000439360.5:ENST00000657342.1:ENST00000428557.1	lncRNA	lncRNA	lncRNA	lncRNA	1	2524	2	7.77691	9.281355	10.7858	3.64153e-6	1.31546e-10	0.00121739	4.91729e-7
chr18	13445241	13445338	7025028	0	+	0.443299	(0.419,0.45]	chr18	717583	10	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000610087.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	1050	2	8.86074	9.27839	9.69604	1.89161e-5	4.51655e-7	0.00250197	6.22261e-5
chr20	44404473	44404571	7482960	0	+	0.428571	(0.419,0.45]	chr20	779645	12	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	2222	2	8.21059	9.277995	10.3454	5.25017e-6	1.25024e-8	0.00140132	6.15756e-6
chr2	239346282	239346382	1392173	0	-	0.44	(0.419,0.45]	chr2	148752	218	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	989	2	9.15943	9.277555	9.39568	5.40327e-5	8.50169e-8	0.0040742	2.13105e-5
chr3	37862778	37862877	1443271	0	+	0.494949	(0.485,0.523]	chr3	153956	1	INTRON	INTRON	CTDSPL	ENSG00000144677.15	ENST00000273179.10:ENST00000443503.6:ENST00000435525.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	970	2	9.17736	9.27585	9.37434	1.1325e-5	4.06553e-8	0.00197163	1.3099e-5
chr20	64021372	64021470	7510615	0	+	0.55102	(0.523,0.58]	chr20	783726	42	INTRON	INTRON	PRPF6	ENSG00000101161.8	ENST00000266079.5	protein_coding	protein_coding	protein_coding	protein_coding	0	950	2	9.17141	9.26008	9.34875	1.7878e-5	2.01725e-8	0.00242217	8.30367e-6
chrX	123864621	123864721	7946326	0	+	0.48	(0.45,0.485]	chrX	831426	37	INTRON	INTRON	XIAP	ENSG00000101966.13	ENST00000422098.5:ENST00000481776.5:ENST00000434753.7:ENST00000497906.5:ENST00000468691.5:ENST00000430625.1:ENST00000371199.8:ENST00000497640.1:ENST00000355640.3:ENST00000468503.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	971	2	9.1152	9.259755	9.40431	1.47803e-5	7.49644e-8	0.00222214	1.97026e-5
chr16	81626492	81626591	6509562	0	+	0.545455	(0.523,0.58]	chr16	645926	44	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	1006	2	8.84336	9.25533	9.6673	6.07515e-6	1.14854e-7	0.00149871	2.57534e-5
chr4	887561	887659	2178478	0	-	0.581633	(0.58,1]	chr4	220626	19	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	2521	2	7.82989	9.251795	10.6737	8.38545e-8	3.82889e-10	3.65954e-4	6.93362e-7
chr4	887857	887956	2178481	0	-	0.444444	(0.419,0.45]	chr4	220626	22	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	975	2	9.00539	9.248715	9.49204	7.28761e-5	6.27971e-8	0.00477703	1.72329e-5
chr2	239290670	239290770	1391615	0	-	0.59	(0.58,1]	chr2	148740	391	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	911	2	9.02305	9.24605	9.46905	5.34011e-6	2.25665e-9	0.00140527	2.18662e-6
chr16	29270313	29270413	6433540	0	+	0.47	(0.45,0.485]	chr16	636745	182	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	1001	2	8.86044	9.245605000000001	9.63077	9.1469e-6	1.74842e-7	0.00182087	3.33303e-5
chr2	10368077	10368177	719080	0	+	0.49	(0.485,0.523]	chr2	84032	133	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	981	2	8.91551	9.244055	9.5726	7.34743e-6	9.94126e-8	0.00163344	2.31888e-5
chr16	89914950	89915045	6526326	0	+	0.547368	(0.523,0.58]	chr16	647716	15	UTR5	UTR5:EXON_MRNA:INTRON	ENSG00000267048:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000539976.1:ENST00000555427.1:ENST00000639847.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	0	1040	2	8.48455	9.242975000000001	10.0014	7.80938e-5	2.07676e-9	0.00492356	2.08853e-6
chr3	48425930	48426027	1766693	0	-	0.463918	(0.45,0.485]	chr3	182283	2	INTRON	INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	2071	2	8.18862	9.24221	10.2958	2.21387e-6	4.96102e-9	0.00109645	3.47159e-6
chr20	63731220	63731320	7509351	0	+	0.53	(0.523,0.58]	chr20	783515	217	INTRON	INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	944	2	8.97783	9.241155	9.50448	2.71639e-5	1.17544e-8	0.00294944	5.98212e-6
chr5	1464526	1464621	2609368	0	-	0.463158	(0.45,0.485]	chr5	259790	3	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000503252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	1326	2	8.07841	9.240805	10.4032	2.25108e-6	1.75863e-6	9.85957e-4	1.80805e-4
chr16	89435819	89435919	6661192	0	-	0.5	(0.485,0.523]	chr16	666753	41	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	938	2	9.08793	9.239004999999999	9.39008	2.10941e-5	1.95813e-8	0.00266738	8.14849e-6
chr7	47475007	47475107	3588558	0	-	0.46	(0.45,0.485]	chr7	346123	219	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	954	2	9.10097	9.235845000000001	9.37072	1.58681e-5	7.86057e-8	0.00228902	2.03727e-5
chr3	172302875	172302974	1630111	0	+	0.464646	(0.45,0.485]	chr3	170608	37	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	3797	2	7.20277	9.234735	11.2667	2.74365e-7	7.36124e-9	6.79419e-4	4.3413e-6
chr7	1070683	1070783	3526934	0	-	0.55	(0.523,0.58]	chr7	340585	155	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	936	2	9.21481	9.23419	9.25357	1.49614e-5	3.2053e-8	0.00223414	1.11916e-5
chr11	18011125	18011222	5015370	0	-	0.453608	(0.45,0.485]	chr11	484704	6	INTRON	INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528200.5:ENST00000532265.5:ENST00000529728.5:ENST00000530613.5:ENST00000532389.5:ENST00000530925.5:ENST00000533328.5:ENST00000532212.5:ENST00000524716.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	977	2	8.91837	9.23185	9.54533	1.09648e-5	1.44293e-7	0.00195108	2.94679e-5
chr6	169659618	169659718	3304467	0	-	0.61	(0.58,1]	chr6	319895	1	SS3_PROX	SS3_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2:ENST00000467418.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	925	2	8.96448	9.227644999999999	9.49081	1.66403e-6	1.54212e-8	9.73457e-4	6.93507e-6
chr20	64021273	64021372	7510614	0	+	0.585859	(0.58,1]	chr20	783726	41	INTRON	INTRON	PRPF6	ENSG00000101161.8	ENST00000266079.5	protein_coding	protein_coding	protein_coding	protein_coding	0	897	2	9.21363	9.22617	9.23871	3.32552e-6	5.44164e-9	0.00118585	3.6847e-6
chr10	96142257	96142356	4560210	0	+	0.40404	(0.39,0.419]	chr10	435112	66	INTRON	INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	2874	2	7.49816	9.225480000000001	10.9528	1.05748e-6	2.07225e-8	8.39394e-4	8.38618e-6
chr1	3470660	3470754	5815	0	+	0.595745	(0.58,1]	chr1	1229	7	INTRON	INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5	protein_coding	protein_coding	protein_coding	protein_coding	0	989	2	8.63602	9.21488	9.79374	7.77667e-7	5.31265e-8	7.94453e-4	1.56042e-5
chr12	56597642	56597739	5437629	0	-	0.587629	(0.58,1]	chr12	534676	22	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	3	6548	2	8.57105	9.213854999999999	9.85666	4.09921e-9	2.14178e-11	1.22757e-4	1.63501e-7
chr9	129498664	129498764	4250763	0	+	0.51	(0.485,0.523]	chr9	404725	2	SS5_PROX	SS5_PROX:INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	954	2	8.73432	9.213435	9.69255	4.51979e-5	6.89156e-9	0.00372394	4.21173e-6
chr16	81679526	81679625	6510106	0	+	0.535354	(0.523,0.58]	chr16	645979	5	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	0	952	2	8.91504	9.210854999999999	9.50667	8.62733e-6	8.98712e-8	0.00177214	2.20297e-5
chr20	62957680	62957780	7508273	0	+	0.58	(0.523,0.58]	chr20	783179	1	SS5_PROX	SS5_PROX:INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	4112	2	7.42018	9.20899	10.9978	1.79168e-6	6.21485e-11	9.85957e-4	3.16058e-7
chr9	71683461	71683557	4313909	0	-	0.34375	(0.33,0.36]	chr9	412404	2	UTR3	UTR3:EXON_MRNA	CEMIP2	ENSG00000135048.14	ENST00000377044.9:ENST00000377057.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	932	2	8.96717	9.20408	9.44099	4.00721e-5	3.84971e-8	0.00351956	1.25787e-5
chr16	81626392	81626492	6509561	0	+	0.49	(0.485,0.523]	chr16	645926	43	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	930	2	9.00689	9.19974	9.39259	1.08835e-5	7.28156e-8	0.00194719	1.92876e-5
chr1	48227462	48227560	120974	0	+	0.520408	(0.485,0.523]	chr1	15165	23	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	909	2	9.05884	9.194320000000001	9.3298	2.24649e-5	2.40937e-8	0.00273967	9.34511e-6
chr16	81626891	81626991	6509566	0	+	0.47	(0.45,0.485]	chr16	645926	48	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	956	2	8.85621	9.193785	9.53136	1.12943e-5	1.77308e-7	0.00197105	3.36857e-5
chr17	7113419	7113517	6847768	0	-	0.408163	(0.39,0.419]	chr17	693423	42	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	2069	2	8.11364	9.19377	10.2739	4.24064e-6	1.31591e-8	0.00127718	6.3506e-6
chr17	7175546	7175644	6847826	0	-	0.418367	(0.39,0.419]	chr17	693457	7	INTRON	INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	1	2068	2	8.14416	9.19293	10.2417	4.5285e-6	1.19212e-8	0.00130045	6.03046e-6
chr9	133915762	133915862	4429558	0	-	0.51	(0.485,0.523]	chr9	423310	540	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	908	2	9.13571	9.18625	9.23679	1.52748e-5	4.6887e-8	0.00223783	1.45018e-5
chr16	2164401	2164501	6372946	0	+	0.61	(0.58,1]	chr16	629423	4	SS5_PROX	SS5_PROX:INTRON	TRAF7	ENSG00000131653.13	ENST00000565383.5:ENST00000569686.5:ENST00000326181.11:ENST00000567653.5:ENST00000564067.5:ENST00000567645.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	1822	2	8.42683	9.18245	9.93807	5.40555e-7	2.41993e-10	7.30832e-4	5.72821e-7
chr17	81074276	81074375	6813763	0	+	0.545455	(0.523,0.58]	chr17	688114	101	INTRON	INTRON	BAIAP2	ENSG00000175866.16	ENST00000321280.11:ENST00000576470.5:ENST00000575750.5:ENST00000428708.7:ENST00000572329.5:ENST00000575989.5:ENST00000570913.5:ENST00000575712.5:ENST00000575245.5:ENST00000321300.10:ENST00000435091.7:ENST00000573894.5:ENST00000571530.5:ENST00000572918.5:ENST00000573017.5:ENST00000575958.5:ENST00000573659.5:ENST00000572073.5:ENST00000573677.5:ENST00000574804.5:ENST00000576364.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	904	2	9.09284	9.17747	9.2621	1.4687e-5	4.88055e-8	0.0022175	1.48222e-5
chr4	887165	887264	2178474	0	-	0.666667	(0.58,1]	chr4	220626	15	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	2897	2	7.44554	9.17432	10.9031	5.83571e-7	8.81784e-12	7.37769e-4	8.7113e-8
chr6	166955366	166955421	3302047	0	-	0.581818	(0.58,1]	chr6	319752	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000358165.7:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	2028	2	7.11406	9.173480000000001	11.2329	1.2868e-5	2.01804e-8	6.14919e-4	2.05316e-4
chr3	129394484	129394579	1911562	0	-	0.568421	(0.523,0.58]	chr3	194158	3	INTRON	INTRON	RPL32P3	ENSG00000251474.7	ENST00000510078.5:ENST00000507287.5:ENST00000687239.1:ENST00000514355.5:ENST00000507238.5:ENST00000515866.5:ENST00000499631.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	918	2	8.92324	9.170535000000001	9.41783	1.04696e-5	8.73805e-8	0.00190754	2.17411e-5
chr16	1735861	1735959	6371297	0	+	0.571429	(0.523,0.58]	chr16	628851	4	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	897	2	8.93223	9.170315	9.4084	2.99683e-5	1.64057e-8	0.003085	7.15655e-6
chr16	81615310	81615409	6509449	0	+	0.454545	(0.45,0.485]	chr16	645921	44	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	948	2	8.79126	9.16945	9.54764	1.09111e-5	2.19819e-7	0.00194719	3.89428e-5
chr14	103105172	103105272	5921870	0	+	0.55	(0.523,0.58]	chr14	579220	1	SS5_PROX	SS5_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	894	2	9.13935	9.16736	9.19537	1.69739e-5	4.1581e-8	0.00237123	1.33016e-5
chr2	235511934	235512034	1062715	0	+	0.45	(0.419,0.45]	chr2	115651	167	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	2583	2	7.97523	9.166915	10.3586	6.99249e-6	4.03197e-9	0.00158617	3.00957e-6
chr7	47352232	47352332	3587313	0	-	0.44	(0.419,0.45]	chr7	346030	55	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	927	2	8.84408	9.16539	9.4867	9.95658e-5	6.38604e-8	0.00558948	1.73561e-5
chr1	2241925	2242024	4630	0	+	0.575758	(0.523,0.58]	chr1	1048	89	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	889	2	9.08109	9.164465	9.24784	2.17368e-5	2.8597e-8	0.0027064	1.03508e-5
chr13	113521033	113521133	5658489	0	+	0.5	(0.485,0.523]	chr13	555715	3	SS5_PROX	SS5_PROX:INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	908	2	8.95196	9.161835	9.37171	1.13899e-5	8.78106e-8	0.00197163	2.18157e-5
chr5	1465195	1465291	2609375	0	-	0.489583	(0.485,0.523]	chr5	259790	10	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000503252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	1218	2	8.04761	9.161555	10.2755	1.82333e-6	1.56813e-6	9.73457e-4	1.56156e-4
chr16	23467389	23467489	6568572	0	-	0.51	(0.485,0.523]	chr16	655371	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000567339.1:ENST00000568922.1:ENST00000566685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	7165	2	8.7902	9.160810000000001	9.53142	1.36505e-7	3.00525e-11	4.50709e-4	2.17555e-7
chr5	1464908	1465004	2609372	0	-	0.458333	(0.45,0.485]	chr5	259790	7	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000503252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	1172	2	8.13535	9.157575000000001	10.1798	2.83825e-6	1.8741e-6	0.00112513	1.59446e-4
chr1	48227560	48227659	120975	0	+	0.494949	(0.485,0.523]	chr1	15165	24	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	886	2	9.13205	9.156410000000001	9.18077	1.91717e-5	4.01821e-8	0.00251711	1.30028e-5
chr20	63731620	63731719	7509355	0	+	0.434343	(0.419,0.45]	chr20	783515	221	INTRON	INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	2104	2	8.43504	9.15439	9.87374	1.33341e-5	6.11436e-9	0.00211935	3.93872e-6
chr21	43920215	43920315	7624982	0	+	0.47	(0.45,0.485]	chr21	796899	34	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5	protein_coding	protein_coding	protein_coding	protein_coding	0	893	2	8.95204	9.15392	9.3558	3.82888e-5	3.35226e-8	0.00344089	1.15308e-5
chr19	7639807	7639894	7199312	0	+	0.505747	(0.485,0.523]	chr19	733969	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	STXBP2	ENSG00000076944.17	ENST00000593535.5:ENST00000595950.5:ENST00000221283.10:ENST00000441779.6:ENST00000595181.5:ENST00000597068.5:ENST00000414284.6:ENST00000599737.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	881	2	9.05884	9.149885000000001	9.24093	2.24649e-5	3.26927e-8	0.00273967	1.1359e-5
chr5	1465387	1465482	2609377	0	-	0.442105	(0.419,0.45]	chr5	259790	12	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000503252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	1165	2	8.15708	9.14634	10.1356	7.95256e-6	3.89975e-6	0.00170725	2.65981e-4
chr10	79221173	79221272	4533573	0	+	0.646465	(0.58,1]	chr10	432457	45	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	865	2	8.9225	9.141365	9.36023	2.30688e-6	1.80749e-8	0.00111233	7.68507e-6
chr19	2336216	2336315	7189483	0	+	0.444444	(0.419,0.45]	chr19	731782	11	INTRON	INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	899	2	9.04466	9.140485	9.23631	6.75313e-5	1.40138e-7	0.00458513	2.88781e-5
chr14	68898980	68899079	5999329	0	-	0.565657	(0.523,0.58]	chr14	588704	49	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	895	2	8.91504	9.139205	9.36337	1.17867e-5	8.98712e-8	0.00199823	2.20297e-5
chr10	127261424	127261523	4610541	0	+	0.545455	(0.523,0.58]	chr10	440799	36	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2:ENST00000484400.5:ENST00000464466.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	921	2	8.56949	9.1388	9.70811	6.51851e-5	5.78694e-9	0.00448806	3.81005e-6
chr17	7174660	7174760	6847817	0	-	0.45	(0.419,0.45]	chr17	693456	2	SS3_PROX	SS3_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	1	2485	2	7.80065	9.138475	10.4763	9.88424e-6	2.7698e-9	0.00185899	2.4481e-6
chr7	66662780	66662879	3382032	0	+	0.525253	(0.523,0.58]	chr7	326325	78	INTRON	INTRON	ENSG00000226824	ENSG00000226824.8	ENST00000693151.1:ENST00000656515.2:ENST00000448096.1:ENST00000439360.5:ENST00000657342.1:ENST00000428557.1	lncRNA	lncRNA	lncRNA	lncRNA	1	2285	2	7.71403	9.136915	10.5598	4.18198e-6	2.91898e-10	0.00126679	6.05223e-7
chr12	132535755	132535854	5352973	0	+	0.535354	(0.523,0.58]	chr12	523670	74	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	884	2	8.79787	9.13598	9.47409	4.00023e-5	1.30625e-8	0.00351956	6.3222e-6
chr6	166930543	166930643	3301782	0	-	0.47	(0.45,0.485]	chr6	319710	1	SS5_PROX	SS5_PROX:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000510083.1:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000467705.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	1477	2	7.62098	9.13249	10.644	9.62e-6	1.04894e-6	8.39394e-4	4.98808e-4
chr16	1738520	1738618	6371324	0	+	0.561224	(0.523,0.58]	chr16	628851	31	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	869	2	8.92866	9.127965	9.32727	3.01994e-5	2.17294e-8	0.00309439	8.66834e-6
chr12	132535954	132536053	5352975	0	+	0.464646	(0.45,0.485]	chr12	523670	76	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	887	2	8.79336	9.12796	9.46256	5.33389e-5	2.34246e-8	0.00405722	9.1703e-6
chr10	127261623	127261723	4610543	0	+	0.53	(0.523,0.58]	chr10	440799	38	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2:ENST00000484400.5:ENST00000464466.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	908	2	8.5877	9.12744	9.66718	6.27035e-5	6.67421e-9	0.00440149	4.21173e-6
chr17	77486623	77486723	6805248	0	+	0.43	(0.419,0.45]	chr17	686821	26	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	892	2	9.08563	9.12402	9.16241	5.37204e-5	2.24412e-7	0.00405853	3.93841e-5
chr16	81549880	81549980	6508792	0	+	0.48	(0.45,0.485]	chr16	645911	540	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	890	2	8.90615	9.121235	9.33632	1.7064e-5	1.50262e-7	0.00237321	3.00506e-5
chr13	113332272	113332372	5753253	0	-	0.6	(0.58,1]	chr13	564094	58	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	1	1756	2	7.90569	9.119295000000001	10.3329	1.99175e-7	1.81406e-9	5.60793e-4	1.92869e-6
chr6	128135062	128135162	3253304	0	-	0.36	(0.33,0.36]	chr6	315160	447	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000531050.5:ENST00000524534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	873	2	8.99114	9.11729	9.24344	3.81244e-5	7.34127e-8	0.00343305	1.93554e-5
chr13	113521431	113521530	5658493	0	+	0.494949	(0.485,0.523]	chr13	555716	3	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	866	2	9.05236	9.116620000000001	9.18088	1.72459e-5	6.23464e-8	0.00238362	1.71372e-5
chr16	1739307	1739406	6371332	0	+	0.575758	(0.523,0.58]	chr16	628851	39	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	859	2	8.96744	9.114145	9.26085	2.77795e-5	2.73404e-8	0.00297655	1.01587e-5
chr12	113836786	113836886	5509236	0	-	0.48	(0.45,0.485]	chr12	542458	131	INTRON	INTRON	RBM19	ENSG00000122965.11	ENST00000545145.6:ENST00000392561.7:ENST00000261741.10:ENST00000552384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	871	2	8.84696	9.11179	9.37662	4.76957e-5	3.1262e-8	0.0038032	1.10286e-5
chr10	103836617	103836717	4758471	0	-	0.49	(0.485,0.523]	chr10	454819	349	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	0	881	2	8.86543	9.11064	9.35585	1.17902e-5	1.17868e-7	0.00199823	2.59103e-5
chr6	43181313	43181409	2918601	0	+	0.53125	(0.523,0.58]	chr6	286865	23	UTR3	UTR3:EXON_MRNA	SRF	ENSG00000112658.8	ENST00000265354.6	protein_coding	protein_coding	protein_coding	protein_coding	0	856	2	8.93934	9.108139999999999	9.27694	2.95129e-5	2.58611e-8	0.00305784	9.80422e-6
chr12	132536252	132536352	5352978	0	+	0.51	(0.485,0.523]	chr12	523670	79	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	1859	2	7.9694	9.10755	10.2457	1.67476e-6	7.18639e-9	9.73457e-4	4.30599e-6
chr16	1739110	1739209	6371330	0	+	0.585859	(0.58,1]	chr16	628851	37	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	821	2	8.97388	9.101144999999999	9.22841	6.03209e-6	5.65948e-9	0.00149871	3.75005e-6
chr14	30921105	30921204	5950939	0	-	0.40404	(0.39,0.419]	chr14	583071	16	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000366206.2:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	1942	2	7.86143	9.093515	10.3256	3.81626e-6	2.97203e-8	0.00122378	1.06654e-5
chr17	77216450	77216548	6803139	0	+	0.540816	(0.523,0.58]	chr17	686684	26	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	1	1831	2	7.94826	9.09028	10.2323	1.75783e-6	7.00204e-9	9.85957e-4	4.24536e-6
chrX	48942204	48942303	8040897	0	-	0.464646	(0.45,0.485]	chrX	838808	55	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	854	2	9.06112	9.08905	9.11698	2.70896e-5	8.97703e-8	0.00294944	2.20297e-5
chr11	497278	497374	4968419	0	-	0.572917	(0.523,0.58]	chr11	480490	19	INTRON	INTRON	RNH1	ENSG00000023191.17	ENST00000534797.5:ENST00000397614.5:ENST00000397604.7:ENST00000354420.7:ENST00000397615.6:ENST00000525522.5:ENST00000525701.5:ENST00000529768.5:ENST00000533410.5:ENST00000438658.6:ENST00000356187.9:ENST00000524464.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	859	2	8.71744	9.088750000000001	9.46006	4.75269e-5	1.37143e-8	0.00379612	6.50639e-6
chr20	21238289	21238388	7448898	0	+	0.484848	(0.45,0.485]	chr20	775009	51	INTRON	INTRON	KIZ	ENSG00000088970.16	ENST00000619574.4:ENST00000620891.4:ENST00000611685.4:ENST00000616848.4:ENST00000619189.5:ENST00000616679.4:ENST00000619179.4:ENST00000621366.1:ENST00000451772.5:ENST00000419359.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	2195	2	7.19527	9.086835	10.9784	5.10794e-7	1.41394e-7	7.30832e-4	2.90299e-5
chr1	43559323	43559423	107032	0	+	0.53	(0.523,0.58]	chr1	13192	50	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	876	2	8.76337	9.084209999999999	9.40505	1.0765e-5	1.50923e-7	0.00194266	3.00675e-5
chr7	92614642	92614742	3636737	0	-	0.39	(0.36,0.39]	chr7	350278	99	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000467166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	2563	2	7.56337	9.080585	10.5978	2.0506e-6	1.64955e-8	0.00104461	7.17707e-6
chr17	7176329	7176423	6847834	0	-	0.457447	(0.45,0.485]	chr17	693458	1	SS5_PROX	SS5_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	1	1851	2	8.03579	9.080395	10.125	3.19075e-6	8.33528e-9	0.00116565	4.69758e-6
chr7	73598013	73598113	3602836	0	-	0.48	(0.45,0.485]	chr7	347627	3	SS3_PROX	SS3_PROX:INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	846	2	8.96941	9.080210000000001	9.19101	3.69212e-5	5.82012e-8	0.00335179	1.63183e-5
chr20	44404965	44405064	7482965	0	+	0.555556	(0.523,0.58]	chr20	779645	17	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	4755	2	8.83446	9.079564999999999	9.32467	3.50948e-7	5.4958e-11	6.9909e-4	2.97741e-7
chr1	17676283	17676383	54974	0	+	0.6	(0.58,1]	chr1	5603	113	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	834	2	8.81647	9.07872	9.34097	2.42059e-6	2.69694e-8	0.00111233	1.00653e-5
chr18	76437047	76437147	7179490	0	-	0.47	(0.45,0.485]	chr18	730080	564	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	875	2	8.75992	9.07312	9.38632	1.53534e-5	2.43803e-7	0.00224014	4.12107e-5
chr16	81626591	81626691	6509563	0	+	0.53	(0.523,0.58]	chr16	645926	45	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	892	2	8.63439	9.07292	9.51145	8.53791e-6	2.34075e-7	0.00176598	4.03613e-5
chr17	7176133	7176231	6847832	0	-	0.479592	(0.45,0.485]	chr17	693457	13	INTRON	INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	1	2236	2	7.68934	9.07197	10.4546	5.86236e-6	8.13097e-10	0.00147216	1.14753e-6
chr9	133854289	133854389	4428941	0	-	0.54	(0.523,0.58]	chr9	423304	196	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	0	844	2	8.92733	9.070205	9.21308	1.63347e-5	8.61662e-8	0.00233274	2.15346e-5
chr5	1464717	1464813	2609370	0	-	0.5	(0.485,0.523]	chr5	259790	5	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000503252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	1118	2	8.00198	9.06949	10.137	2.12836e-6	2.11842e-6	0.00107806	1.73297e-4
chr10	103836417	103836517	4758469	0	-	0.48	(0.45,0.485]	chr10	454819	347	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	0	890	2	8.64698	9.065394999999999	9.48381	1.24915e-5	3.53774e-7	0.00206603	5.27663e-5
chr2	10367977	10368077	719079	0	+	0.43	(0.419,0.45]	chr2	84032	132	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	865	2	8.90141	9.06392	9.22643	4.74245e-5	3.98118e-7	0.00379612	5.71962e-5
chr14	30921005	30921105	5950938	0	-	0.4	(0.39,0.419]	chr14	583071	15	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000366206.2:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	3024	2	7.31375	9.052325	10.7909	1.4736e-6	1.72857e-8	9.54163e-4	7.4247e-6
chr18	13445631	13445729	7025032	0	+	0.469388	(0.45,0.485]	chr18	717583	14	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000610087.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	878	2	8.65187	9.051955	9.45204	1.33607e-5	3.4813e-7	0.00211935	5.21562e-5
chr6	166930459	166930543	3301781	0	-	0.52381	(0.523,0.58]	chr6	319709	3	INTRON	INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000510083.1:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000467705.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	1262	2	7.70616	9.047979999999999	10.3898	5.14768e-6	1.24212e-6	9.15144e-4	3.22346e-4
chr17	81564074	81564170	6984923	0	-	0.479167	(0.45,0.485]	chr17	713722	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000572760.5:ENST00000572346.5:ENST00000573519.5:ENST00000573876.1:ENST00000571714.5:ENST00000572824.1:ENST00000573212.5:ENST00000576713.6:ENST00000374747.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	833	2	8.95836	9.04696	9.13556	2.60517e-5	1.26351e-7	0.00292399	2.7032e-5
chr17	78798122	78798221	6979430	0	-	0.555556	(0.523,0.58]	chr17	712642	26	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	USP36	ENSG00000055483.20	ENST00000588130.5:ENST00000587010.5:ENST00000591052.5:ENST00000589225.5:ENST00000587379.1:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	820	2	9.01868	9.046610000000001	9.07454	2.48729e-5	5.19773e-8	0.00285743	1.54848e-5
chr6	166955182	166955274	3302045	0	-	0.652174	(0.58,1]	chr6	319751	1	SS5_PROX	SS5_PROX:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000358165.7:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	6822	2	8.9459	9.042745	9.13959	7.93615e-9	7.11487e-9	1.39828e-4	4.51057e-6
chr9	136007332	136007432	4432145	0	-	0.61	(0.58,1]	chr9	423617	9	UTR3	UTR3:EXON_MRNA	NACC2	ENSG00000148411.8	ENST00000277554.4:ENST00000371753.5	protein_coding	protein_coding	protein_coding	protein_coding	2	2211	2	7.92778	9.042290000000001	10.1568	3.11054e-7	2.61901e-10	6.84755e-4	5.72821e-7
chr9	134339634	134339734	4260819	0	+	0.54	(0.523,0.58]	chr9	406311	126	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	831	2	8.78603	9.028305	9.27058	1.44191e-5	1.39692e-7	0.00219358	2.88216e-5
chr8	9772823	9772923	3754906	0	+	0.47	(0.45,0.485]	chr8	360887	4	SS5_PROX	SS5_PROX:INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	0	838	2	8.76444	9.024485	9.28453	1.90352e-5	2.40191e-7	0.00250658	4.07877e-5
chrX	315974	316062	7964855	0	-	0.477273	(0.45,0.485]	chrX	834136	3	INTRON	INTRON	GTPBP6	ENSG00000178605.13	ENST00000326153.9	protein_coding	protein_coding	protein_coding	protein_coding	0	814	2	8.86564	9.02327	9.1809	4.58717e-5	6.02001e-8	0.00373545	1.67113e-5
chr11	110230508	110230605	5123789	0	-	0.43299	(0.419,0.45]	chr11	497283	12	UTR3	UTR3:EXON_MRNA:INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000645312.1:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000527537.5:ENST00000532461.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	828	2	8.99874	9.02069	9.04264	7.38217e-5	2.56596e-7	0.00480458	4.26254e-5
chr17	57477081	57477181	6761983	0	+	0.47	(0.45,0.485]	chr17	682137	320	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	812	2	9.01696	9.018545	9.02013	3.34196e-5	1.02894e-7	0.00320976	2.3672e-5
chr16	1735959	1736058	6371298	0	+	0.575758	(0.523,0.58]	chr16	628851	5	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	803	2	8.82883	9.015105	9.20138	3.74307e-5	3.35737e-8	0.00338946	1.15308e-5
chrX	133650440	133650540	8112660	0	-	0.43	(0.419,0.45]	chrX	845480	535	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000692074.1:ENST00000667662.1:ENST00000666017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	821	2	8.97182	9.009045	9.04627	7.77736e-5	2.53709e-7	0.00492182	4.22712e-5
chr20	62957980	62958080	7508276	0	+	0.52	(0.485,0.523]	chr20	783179	4	SS5_PROX	SS5_PROX:INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	2161	2	7.90681	9.008155	10.1095	2.69384e-6	1.61938e-9	0.00111698	1.81028e-6
chr10	103836517	103836617	4758470	0	-	0.45	(0.419,0.45]	chr10	454819	348	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	0	835	2	8.81463	9.007605	9.20058	4.98734e-5	5.21005e-7	0.00389327	6.79881e-5
chr19	2336017	2336116	7189481	0	+	0.414141	(0.39,0.419]	chr19	731782	9	INTRON	INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	826	2	8.68295	9.00711	9.33127	1.04567e-4	7.90342e-8	0.00570277	2.04522e-5
chr15	28217194	28217293	6207143	0	-	0.555556	(0.523,0.58]	chr15	611111	10	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	0	800	2	8.9556	9.00537	9.05514	2.29902e-5	7.82073e-8	0.00276344	2.03322e-5
chr14	89336055	89336154	6027463	0	-	0.363636	(0.36,0.39]	chr14	591456	24	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	811	2	8.9433	9.00117	9.05904	5.94237e-5	1.84746e-7	0.00428256	3.46674e-5
chr5	1465100	1465195	2609374	0	-	0.515789	(0.485,0.523]	chr5	259790	9	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000503252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	1053	2	7.94686	8.99563	10.0444	2.60992e-6	2.5381e-6	0.00111692	1.95444e-4
chr1	43597347	43597447	107424	0	+	0.49	(0.485,0.523]	chr1	13241	2	SS3_PROX	SS3_PROX:INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	0	791	2	8.8445	8.99362	9.14274	3.56731e-5	4.5773e-8	0.00330237	1.42359e-5
chr13	113613646	113613745	5659137	0	+	0.515152	(0.485,0.523]	chr13	555781	22	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	813	2	8.55147	8.99258	9.43369	6.68238e-5	1.68505e-8	0.00454402	7.29373e-6
chr16	81626292	81626392	6509560	0	+	0.45	(0.419,0.45]	chr16	645926	42	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	843	2	8.66677	8.990765	9.31476	3.99203e-5	8.22664e-7	0.00351956	9.23551e-5
chr21	45134314	45134414	7629264	0	+	0.71	(0.58,1]	chr21	797547	2	SS3_PROX	SS3_PROX:INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5:ENST00000449478.1:ENST00000464215.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	761	2	8.81942	8.990414999999999	9.16141	8.83597e-6	7.3041e-9	0.00180254	4.33542e-6
chr3	15442119	15442217	1417825	0	+	0.387755	(0.36,0.39]	chr3	152331	31	UTR3	UTR3:EXON_MRNA:INTRON	EAF1	ENSG00000144597.14	ENST00000396842.7:ENST00000617675.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	817	2	8.81523	8.989004999999999	9.16278	3.82319e-5	3.99793e-7	0.00343925	5.72763e-5
chr22	42648894	42648994	7821321	0	-	0.58	(0.523,0.58]	chr22	820392	2	SS5_PROX	SS5_PROX:INTRON	CYB5R3	ENSG00000100243.22	ENST00000693367.1:ENST00000352397.10:ENST00000361740.9:ENST00000692152.1:ENST00000693363.1:ENST00000689795.1:ENST00000686523.1:ENST00000407332.6:ENST00000687183.1:ENST00000691295.1:ENST00000690835.1:ENST00000689195.1:ENST00000688244.1:ENST00000690993.1:ENST00000689239.1:ENST00000692344.1:ENST00000686129.1:ENST00000466276.2:ENST00000693716.1:ENST00000688004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	866	2	8.44227	8.98869	9.53511	8.10854e-6	4.4844e-7	0.00172109	6.18848e-5
chr2	3221040	3221140	1080311	0	-	0.55	(0.523,0.58]	chr2	117609	64	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000482570.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	821	2	8.46004	8.98635	9.51266	8.22652e-5	1.14251e-8	0.00502313	5.90402e-6
chr9	4713988	4714087	4269910	0	-	0.363636	(0.36,0.39]	chr9	407900	5	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	1	1888	2	8.39171	8.98632	9.58093	1.64067e-5	5.24662e-9	0.00233274	3.62613e-6
chr17	77215868	77215965	6803133	0	+	0.525773	(0.523,0.58]	chr17	686684	20	UTR3	UTR3:EXON_MRNA:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	0	788	2	8.95959	8.98577	9.01195	2.52366e-5	7.71433e-8	0.0028733	2.01492e-5
chr12	132531374	132531474	5352929	0	+	0.6	(0.58,1]	chr12	523670	30	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	758	2	8.94136	8.98528	9.0292	6.53773e-6	1.20681e-8	0.0015378	6.05011e-6
chr6	166930843	166930943	3301785	0	-	0.45	(0.419,0.45]	chr6	319710	4	SS5_PROX	SS5_PROX:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000510083.1:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000467705.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	1345	2	7.48471	8.984355	10.484	2.86803e-5	3.9888e-6	0.001239	0.00108927
chr4	3363097	3363197	2005067	0	+	0.59	(0.58,1]	chr4	204663	197	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	768	2	8.62836	8.98311	9.33786	1.41347e-5	3.72751e-9	0.00218388	2.8754e-6
chr17	7175448	7175546	6847825	0	-	0.489796	(0.485,0.523]	chr17	693457	6	INTRON	INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	2	2292	2	7.33659	8.981095	10.6256	7.23202e-7	1.23706e-8	7.94453e-4	6.12858e-6
chr9	95041372	95041471	4190415	0	+	0.424242	(0.419,0.45]	chr9	398152	192	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000297979.9:ENST00000424143.5:ENST00000462125.5:ENST00000479161.5:ENST00000460573.5:ENST00000478603.5:ENST00000471978.5:ENST00000445181.5:ENST00000478473.1:ENST00000463372.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	838	2	8.64298	8.97887	9.31476	3.99203e-5	8.85215e-7	0.00351956	9.69154e-5
chr7	34725078	34725177	3572879	0	-	0.525253	(0.523,0.58]	chr7	344532	13	INTRON	INTRON	NPSR1-AS1	ENSG00000197085.11	ENST00000419766.5:ENST00000539747.5:ENST00000439852.5:ENST00000358772.8:ENST00000431669.5:ENST00000428922.5:ENST00000436945.4	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	865	2	8.38995	8.971855000000001	9.55376	7.7852e-6	5.34849e-7	0.00169721	6.93635e-5
chr7	55061541	55061641	3371971	0	+	0.49	(0.485,0.523]	chr7	325289	176	INTRON	INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000463948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	858	2	8.40397	8.967405	9.53084	8.04957e-6	5.58782e-7	0.00171675	7.12027e-5
chr10	100548934	100549034	4569155	0	+	0.53	(0.523,0.58]	chr10	436105	9	UTR3	UTR3:EXON_MRNA	HIF1AN	ENSG00000166135.14	ENST00000299163.7	protein_coding	protein_coding	protein_coding	protein_coding	0	790	2	8.77248	8.965885	9.15929	1.83537e-5	1.4630600000000001e-07	0.00246415	2.96757e-5
chr6	63658670	63658769	2934492	0	+	0.414141	(0.39,0.419]	chr6	288800	115	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	793	2	8.96269	8.9658	8.96891	5.9974e-5	2.50162e-7	0.00429933	4.19718e-5
chr13	113521233	113521332	5658491	0	+	0.50505	(0.485,0.523]	chr13	555716	1	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	787	2	8.80028	8.964615	9.12895	1.93012e-5	1.47041e-7	0.00252667	2.97529e-5
chr5	1465482	1465578	2609378	0	-	0.5	(0.485,0.523]	chr5	259790	13	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000503252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	1041	2	7.88955	8.962824999999999	10.0361	3.06111e-6	2.65786e-6	0.00111692	2.22941e-4
chr2	10367877	10367977	719078	0	+	0.48	(0.45,0.485]	chr2	84032	131	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	818	2	8.60224	8.962555	9.32287	1.75556e-5	4.09835e-7	0.00241148	5.80356e-5
chr19	2336914	2337014	7189490	0	+	0.62	(0.58,1]	chr19	731783	4	SS3_PROX	SS3_PROX:INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	744	2	8.9006	8.958945	9.01729	7.23122e-6	1.26257e-8	0.0016238	6.20012e-6
chr7	47474308	47474408	3588551	0	-	0.4	(0.39,0.419]	chr7	346123	212	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	791	2	8.90596	8.957985	9.01001	5.45682e-5	3.05271e-7	0.00409482	4.7975e-5
chr17	72553533	72553633	6963846	0	-	0.59	(0.58,1]	chr17	710389	191	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	3	2498	2	7.58617	8.957435	10.3287	2.01299e-7	3.74491e-10	5.60793e-4	6.91147e-7
chr13	113614241	113614341	5659143	0	+	0.56	(0.523,0.58]	chr13	555781	28	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	795	2	8.49424	8.957139999999999	9.42004	7.65029e-5	1.57567e-8	0.00489022	7.0193e-6
chr17	356096	356196	6821854	0	-	0.57	(0.523,0.58]	chr17	689641	31	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	1	2064	2	7.80336	8.95378	10.1042	3.43545e-6	1.4486e-9	0.00120797	1.7013e-6
chr10	127261224	127261324	4610539	0	+	0.56	(0.523,0.58]	chr10	440799	34	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2:ENST00000484400.5:ENST00000464466.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	797	2	8.46004	8.95297	9.4459	8.22652e-5	1.44052e-8	0.00502313	6.68315e-6
chr17	72554331	72554431	6963854	0	-	0.58	(0.523,0.58]	chr17	710389	199	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	2	2271	2	7.84581	8.951455	10.0571	2.5848e-6	1.88184e-9	0.00111692	1.93894e-6
chr22	24303828	24303922	7696505	0	+	0.446809	(0.419,0.45]	chr22	805634	11	INTRON	INTRON	SPECC1L:SPECC1L-ADORA2A	ENSG00000100014.20:ENSG00000258555.6	ENST00000437398.5:ENST00000421374.5:ENST00000314328.14:ENST00000651059.1:ENST00000541492.1:ENST00000416735.5:ENST00000358654.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	790	2	8.90941	8.949055	8.9887	7.52713e-5	3.88355e-7	0.00484351	5.64209e-5
chr10	127261324	127261424	4610540	0	+	0.55	(0.523,0.58]	chr10	440799	35	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2:ENST00000484400.5:ENST00000464466.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	800	2	8.41994	8.948409999999999	9.47688	8.95674e-5	1.29367e-8	0.00524798	6.29758e-6
chr11	61272998	61273098	5041306	0	-	0.43	(0.419,0.45]	chr11	488757	4	SS5_PROX	SS5_PROX:INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10:ENST00000535710.1:ENST00000398808.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	810	2	8.66204	8.944234999999999	9.22643	4.74245e-5	8.34734e-7	0.00379612	9.32677e-5
chr2	236078048	236078148	1068402	0	+	0.52	(0.485,0.523]	chr2	115777	56	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000418654.1:ENST00000466575.5:ENST00000453371.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	779	2	8.72738	8.9405	9.15362	1.82962e-5	1.88223e-7	0.0024612	3.51628e-5
chr16	87917763	87917863	6657543	0	-	0.49	(0.485,0.523]	chr16	666059	125	INTRON	INTRON	CA5A	ENSG00000174990.8	ENST00000649158.1:ENST00000648177.1:ENST00000649794.3:ENST00000648022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	2389	2	6.91408	8.939440000000001	10.9648	3.40853e-7	5.33979e-8	6.9909e-4	1.56042e-5
chr2	239371401	239371501	1392426	0	-	0.45	(0.419,0.45]	chr2	148759	181	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	782	2	8.8103	8.939084999999999	9.06787	1.06273e-4	2.3719e-7	0.00576627	4.0648e-5
chr21	42849126	42849225	7675463	0	-	0.616162	(0.58,1]	chr21	802287	55	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	4	6630	2	8.59596	8.937629999999999	9.2793	1.02687e-7	1e-12	4.16108e-4	1.89192e-8
chr2	226781839	226781939	1379694	0	-	0.47	(0.45,0.485]	chr2	147292	452	INTRON	INTRON	IRS1	ENSG00000169047.6	ENST00000305123.6	protein_coding	protein_coding	protein_coding	protein_coding	0	817	2	8.49755	8.93544	9.37333	1.57808e-5	5.77697e-7	0.00228011	7.27846e-5
chr13	75391190	75391290	5727096	0	-	0.38	(0.36,0.39]	chr13	561722	140	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	0	774	2	8.81582	8.933805	9.05179	7.66874e-5	1.89053e-7	0.00489022	3.52002e-5
chr11	70658229	70658329	5060857	0	-	0.52	(0.485,0.523]	chr11	492672	34	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	781	2	8.67019	8.932995	9.1958	1.66963e-5	2.28369e-7	0.00235513	3.97035e-5
chr20	63732618	63732718	7509365	0	+	0.39	(0.36,0.39]	chr20	783515	231	INTRON	INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	814	2	8.37883	8.931975000000001	9.48512	1.82465e-4	4.74062e-8	0.00759404	1.45439e-5
chr1	1341266	1341366	381189	0	-	0.48	(0.45,0.485]	chr1	43163	2	SS5_PROX	SS5_PROX:INTRON	DVL1	ENSG00000107404.21	ENST00000378891.9:ENST00000378888.10	protein_coding	protein_coding	protein_coding	protein_coding	0	786	2	8.48099	8.930275	9.37956	1.01972e-4	3.09542e-8	0.00563933	1.09445e-5
chr8	127849640	127849739	3918339	0	+	0.606061	(0.58,1]	chr8	374180	30	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000655594.1	lncRNA	lncRNA	lncRNA	lncRNA	2	2070	2	7.9222	8.923695	9.92519	5.58399e-7	2.67655e-10	7.30832e-4	5.72821e-7
chr4	887956	888055	2178482	0	-	0.565657	(0.523,0.58]	chr4	220626	23	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	752	2	8.72979	8.920345000000001	9.1109000000000009	4.62864e-5	4.5862e-8	0.00374781	1.42372e-5
chr1	31578588	31578688	81030	0	+	0.42	(0.419,0.45]	chr1	9279	4	SS5_PROX	SS5_PROX:INTRON	LINC01226:TINAGL1	ENSG00000284543.1:ENSG00000142910.16	ENST00000639839.1:ENST00000640226.1:ENST00000457433.6:ENST00000271064.12:ENST00000461030.5:ENST00000478398.5:ENST00000481165.5:ENST00000537531.2:ENST00000468635.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	1017	2	7.87613	8.917285	9.95844	1.12836e-5	9.06003e-6	0.00197105	4.79092e-4
chr7	216659	216759	3305821	0	+	0.5	(0.485,0.523]	chr7	320161	73	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	749	2	8.78257	8.9156	9.04863	4.07518e-5	6.31469e-8	0.00354247	1.72724e-5
chr21	45133682	45133782	7629257	0	+	0.67	(0.58,1]	chr21	797544	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5:ENST00000449478.1:ENST00000464215.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	720	2	8.78318	8.912099999999999	9.04102	9.66154e-6	1.15392e-8	0.00184763	5.9084e-6
chr16	85374242	85374342	6516813	0	+	0.6	(0.58,1]	chr16	646391	149	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	758	2	8.53934	8.910464999999999	9.28159	2.80728e-6	7.62631e-8	0.00112513	1.99814e-5
chr20	64021666	64021764	7510618	0	+	0.581633	(0.58,1]	chr20	783726	45	INTRON	INTRON	PRPF6	ENSG00000101161.8	ENST00000266079.5	protein_coding	protein_coding	protein_coding	protein_coding	1	1498	2	8.0699	8.909205	9.74851	8.71411e-7	9.63069e-10	8.09214e-4	1.27357e-6
chr1	23519015	23519072	425301	0	-	0.631579	(0.58,1]	chr1	49997	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA	E2F2	ENSG00000007968.7	ENST00000361729.3:ENST00000487237.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	1594	2	8.48284	8.90913	9.33542	2.45438e-6	1.94682e-10	0.00111634	5.33862e-7
chr14	39085661	39085761	5967671	0	-	0.37	(0.36,0.39]	chr14	584640	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SEC23A	ENSG00000100934.15	ENST00000307712.11:ENST00000537403.5:ENST00000545328.6	protein_coding	protein_coding	protein_coding	protein_coding	0	775	2	8.70857	8.90821	9.10785	4.27024e-5	5.59461e-7	0.00362006	7.12352e-5
chrX	9569240	9569340	7843492	0	+	0.49	(0.485,0.523]	chrX	822423	83	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	747	2	8.83105	8.90293	8.97481	2.69385e-5	1.32465e-7	0.00294664	2.7946e-5
chr6	31735861	31735961	3119444	0	-	0.56	(0.523,0.58]	chr6	303333	2	SS5_PROX	SS5_PROX:INTRON	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000616760.1:ENST00000375784.8	protein_coding	protein_coding	protein_coding	protein_coding	0	779	2	8.51463	8.89682	9.27901	1.41577e-5	3.51229e-7	0.00218388	5.248e-5
chr20	26009887	26009984	7452322	0	+	0.587629	(0.58,1]	chr20	775551	2	EXON_LNCRNA	EXON_LNCRNA	ENSG00000287569	ENSG00000287569.1	ENST00000668826.1	lncRNA	lncRNA	lncRNA	lncRNA	0	712	2	8.80342	8.896255	8.98909	9.19136e-6	1.40491e-8	0.00182087	6.59076e-6
chr8	9772068	9772168	3754897	0	+	0.55	(0.523,0.58]	chr8	360882	3	SS3_PROX	SS3_PROX:INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	0	788	2	8.45929	8.895295	9.3313	1.26378e-5	4.23415e-7	0.0020724	5.94106e-5
chr10	31928182	31928282	4661829	0	-	0.62	(0.58,1]	chr10	444986	1	SS5_PROX	SS5_PROX:INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9	protein_coding	protein_coding	protein_coding	protein_coding	0	716	2	8.62382	8.89442	9.16502	1.42931e-5	7.2046e-9	0.0021856000000000002	4.30599e-6
chrX	9568641	9568741	7843486	0	+	0.5	(0.485,0.523]	chrX	822423	77	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	738	2	8.84828	8.894095	8.93991	3.53839e-5	9.14886e-8	0.00328636	2.21719e-5
chr4	3368481	3368581	2005121	0	+	0.6	(0.58,1]	chr4	204663	251	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	711	2	8.75435	8.89375	9.03315	1.03724e-5	1.18886e-8	0.00189483	6.03046e-6
chr16	89429855	89429955	6661132	0	-	0.54	(0.523,0.58]	chr16	666747	111	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	774	2	8.33623	8.892485	9.44874	1.06923e-4	1.42638e-8	0.00577346	6.63759e-6
chr6	169621352	169621452	3304070	0	-	0.45	(0.419,0.45]	chr6	319826	73	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	776	2	8.4691	8.889885	9.31067	2.04516e-4	1.11015e-7	0.00807449	2.51953e-5
chr20	64270094	64270193	7511213	0	+	0.646465	(0.58,1]	chr20	783907	17	INTRON	INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609818.1	protein_coding	protein_coding	protein_coding	protein_coding	0	759	2	8.4476	8.888725	9.32985	2.48877e-6	1.07342e-7	0.00111692	2.44609e-5
chr20	23635153	23635253	7537534	0	-	0.53	(0.523,0.58]	chr20	786642	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CST3	ENSG00000101439.9	ENST00000398411.5:ENST00000398409.1:ENST00000376925.8	protein_coding	protein_coding	protein_coding	protein_coding	0	734	2	8.7461	8.887875000000001	9.02965	4.46975e-5	6.06512e-8	0.00368958	1.67471e-5
chr17	7113026	7113124	6847764	0	-	0.55102	(0.523,0.58]	chr17	693423	38	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	746	2	8.71693	8.88767	9.05841	2.28284e-5	1.76795e-7	0.00276344	3.36262e-5
chr21	45452424	45452524	7630787	0	+	0.44	(0.419,0.45]	chr21	797656	466	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	756	2	8.6916	8.886849999999999	9.0821	1.33558e-4	2.269e-7	0.00642129	3.96947e-5
chrX	120438660	120438758	8096627	0	-	0.397959	(0.39,0.419]	chrX	844121	23	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	2242	2	7.38385	8.886075	10.3883	3.35748e-6	2.99878e-8	0.00119248	1.07156e-5
chr1	3470944	3471038	5818	0	+	0.680851	(0.58,1]	chr1	1229	10	INTRON	INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5	protein_coding	protein_coding	protein_coding	protein_coding	0	792	2	8.27819	8.88325	9.48831	1.67448e-6	2.01127e-7	9.73457e-4	3.6561e-5
chr19	47229242	47229341	7392374	0	-	0.484848	(0.45,0.485]	chr19	768106	4	INTRON	INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	0	738	2	8.73363	8.88253	9.03143	6.04052e-5	9.90983e-8	0.0043082	2.31477e-5
chr16	20691674	20691774	6416375	0	+	0.45	(0.419,0.45]	chr16	634386	96	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	770	2	8.45945	8.878995	9.29854	2.08318e-4	1.15318e-7	0.00813372	2.5823e-5
chr1	1340803	1340903	381184	0	-	0.62	(0.58,1]	chr1	43161	3	SS3_PROX	SS3_PROX:INTRON	DVL1	ENSG00000107404.21	ENST00000378891.9:ENST00000378888.10	protein_coding	protein_coding	protein_coding	protein_coding	0	717	2	8.49032	8.878074999999999	9.26583	1.98121e-5	4.9072e-9	0.0025709	3.47159e-6
chr6	37911973	37912073	2909764	0	+	0.46	(0.45,0.485]	chr6	285643	916	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	0	735	2	8.79725	8.877805	8.95836	5.29075e-5	1.26351e-7	0.00403818	2.7032e-5
chr7	74499801	74499901	3391825	0	+	0.37	(0.36,0.39]	chr7	327343	453	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	0	749	2	8.62906	8.87763	9.1262	1.11241e-4	1.49227e-7	0.0058889	2.99526e-5
chr1	1052978	1053074	1294	0	+	0.53125	(0.523,0.58]	chr1	283	11	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	2017	2	7.88317	8.877469999999999	9.87177	2.88146e-6	3.26853e-9	0.00112513	2.65187e-6
chr17	15464962	15465062	6860084	0	-	0.47	(0.45,0.485]	chr17	695067	115	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	741	2	8.76895	8.876055000000001	8.98316	3.58733e-5	2.36643e-7	0.00330375	4.06373e-5
chr2	11483379	11483479	719694	0	+	0.53	(0.523,0.58]	chr2	84084	6	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000628795.2	protein_coding	protein_coding	protein_coding	protein_coding	1	1570	2	7.78774	8.872505	9.95727	3.21838e-6	1.22652e-8	0.00116565	6.09433e-6
chr17	355896	355996	6821852	0	-	0.56	(0.523,0.58]	chr17	689641	29	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	0	730	2	8.61015	8.871220000000001	9.13229	5.97725e-5	4.26048e-8	0.0042938	1.35261e-5
chr9	133915563	133915663	4429556	0	-	0.52	(0.485,0.523]	chr9	423310	538	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	728	2	8.81794	8.86814	8.91834	3.04283e-5	1.3849e-7	0.00310406	2.86439e-5
chr7	139704143	139704243	3723187	0	-	0.51	(0.485,0.523]	chr7	357498	721	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	732	2	8.75056	8.86786	8.98516	2.63434e-5	1.74022e-7	0.00292399	3.32116e-5
chr1	48227068	48227166	120970	0	+	0.520408	(0.485,0.523]	chr1	15165	19	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	724	2	8.71787	8.86622	9.01457	4.68203e-5	7.09327e-8	0.00378074	1.89093e-5
chr14	68899276	68899374	5999332	0	-	0.612245	(0.58,1]	chr14	588704	52	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	744	2	8.43571	8.8644	9.29309	2.72789e-6	1.12194e-7	0.00111925	2.53943e-5
chr6	166930375	166930459	3301780	0	-	0.47619	(0.45,0.485]	chr6	319709	2	INTRON	INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000510083.1:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000467705.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	1101	2	7.54946	8.86313	10.1768	1.2029e-5	2.85644e-6	0.00112513	5.8591e-4
chr11	497670	497770	4968423	0	-	0.59	(0.58,1]	chr11	480491	3	SS5_PROX	SS5_PROX:INTRON	RNH1	ENSG00000023191.17	ENST00000534797.5:ENST00000397614.5:ENST00000397604.7:ENST00000354420.7:ENST00000397615.6:ENST00000525522.5:ENST00000525701.5:ENST00000529768.5:ENST00000533410.5:ENST00000438658.6:ENST00000356187.9:ENST00000524464.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	712	2	8.42909	8.859115	9.28914	2.30008e-5	4.48961e-9	0.00276344	3.25005e-6
chr3	188240262	188240362	1652661	0	+	0.47	(0.45,0.485]	chr3	173753	1	SS5_PROX	SS5_PROX:INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	0	737	2	8.68085	8.857209999999998	9.03357	3.22754e-5	3.16452e-7	0.00317546	4.91645e-5
chr9	137781003	137781101	4266119	0	+	0.622449	(0.58,1]	chr9	407438	9	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	697	2	8.55384	8.85219	9.15054	1.69644e-5	7.61243e-9	0.00237123	4.39339e-6
chr6	1737480	1737580	3080246	0	-	0.46	(0.45,0.485]	chr6	299476	106	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	722	2	8.72138	8.85161	8.98184	6.19644e-5	1.16869e-7	0.00437718	2.59103e-5
chr3	65921863	65921963	1814697	0	-	0.52	(0.485,0.523]	chr3	187310	143	INTRON	INTRON	MAGI1:MAGI1-IT1	ENSG00000151276.24:ENSG00000272610.1	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5:ENST00000460754.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	2	2108	2	7.14744	8.850919999999999	10.5544	8.46604e-7	2.38389e-8	7.94453e-4	9.2892e-6
chr2	78079046	78079146	1208240	0	-	0.45	(0.419,0.45]	chr2	130071	1388	INTRON	INTRON	ENSG00000227088	ENSG00000227088.2	ENST00000667782.1	lncRNA	lncRNA	lncRNA	lncRNA	0	737	2	8.63268	8.84849	9.0643	1.49556e-4	2.3985e-7	0.00681825	4.07877e-5
chr16	1735664	1735762	6371295	0	+	0.591837	(0.58,1]	chr16	628851	2	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	691	2	8.61009	8.846820000000001	9.08355	1.47821e-5	9.81948e-9	0.00222214	5.28571e-6
chr5	74824669	74824769	2692303	0	-	0.44	(0.419,0.45]	chr5	265977	103	INTRON	INTRON	FAM169A	ENSG00000198780.13	ENST00000389156.9:ENST00000510496.5:ENST00000687041.1:ENST00000514215.5:ENST00000510609.5:ENST00000513277.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	734	2	8.83664	8.846625	8.85661	1.01006e-4	4.57476e-7	0.00560277	6.24644e-5
chr6	169621452	169621551	3304071	0	-	0.40404	(0.39,0.419]	chr6	319826	74	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	742	2	8.48663	8.84642	9.20621	1.54036e-4	1.1776e-7	0.00691092	2.59103e-5
chr13	113521332	113521431	5658492	0	+	0.444444	(0.419,0.45]	chr13	555716	2	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	732	2	8.80268	8.84398	8.88528	1.07845e-4	4.18555e-7	0.00580565	5.8972e-5
chr16	85374142	85374242	6516812	0	+	0.59	(0.58,1]	chr16	646391	148	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	739	2	8.38096	8.84273	9.3045	2.65132e-6	1.37488e-7	0.00111692	2.85586e-5
chr16	1735466	1735566	6371293	0	+	0.62	(0.58,1]	chr16	628850	5	PRIMIRNA	PRIMIRNA:INTRON	MAPK8IP3:MIR3177	ENSG00000138834.15:ENSG00000265820.1	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1:ENST00000578255.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:processed_transcript:primary_miRNA	0	691	2	8.56337	8.84226	9.12115	1.65736e-5	8.51243e-9	0.00234391	4.74959e-6
chr5	173892953	173893050	2592542	0	+	0.453608	(0.45,0.485]	chr5	257270	15	INTRON	INTRON	CPEB4	ENSG00000113742.14	ENST00000265085.10:ENST00000334035.9:ENST00000520867.5:ENST00000519835.5:ENST00000522344.1:ENST00000519152.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	796	2	8.26219	8.842134999999999	9.42208	1.42351e-5	1.24365e-6	0.0021856000000000002	1.20802e-4
chr20	58688351	58688450	7498561	0	+	0.343434	(0.33,0.36]	chr20	781977	90	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1:ENST00000413559.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	0	768	2	8.23098	8.84017	9.44936	1.8194e-4	3.74566e-8	0.00759001	1.23683e-5
chr22	19423419	19423519	7763490	0	-	0.45	(0.419,0.45]	chr22	813787	123	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	1639	2	7.74621	8.839355	9.9325	1.18759e-5	5.45799e-8	0.00200894	1.57771e-5
chr7	1070883	1070982	3526936	0	-	0.585859	(0.58,1]	chr7	340585	157	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	687	2	8.81188	8.839120000000001	8.86636	7.8694e-6	2.744e-8	0.00170277	1.01732e-5
chr16	571260	571355	6368127	0	+	0.610526	(0.58,1]	chr16	627950	1	INTRON	INTRON	PIGQ	ENSG00000007541.17	ENST00000293874.2:ENST00000409527.6:ENST00000321878.10:ENST00000439574.1:ENST00000422307.6:ENST00000636657.1:ENST00000026218.9:ENST00000470411.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	1703	2	7.62829	8.837895	10.0475	1.19357e-6	2.4337e-10	9.09437e-4	5.72821e-7
chr19	7153227	7153327	7323799	0	-	0.53	(0.523,0.58]	chr19	756779	3	SS3_PROX	SS3_PROX:INTRON	INSR	ENSG00000171105.14	ENST00000341500.9:ENST00000302850.10:ENST00000598216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	756	2	8.40174	8.83616	9.27058	1.44191e-5	5.14041e-7	0.00219358	6.74657e-5
chr7	129944684	129944783	3707658	0	-	0.565657	(0.523,0.58]	chr7	356243	71	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	848	2	8.02861	8.83281	9.63701	6.49099e-6	1.78701e-6	0.00153653	1.54304e-4
chr17	7109584	7109682	6847729	0	-	0.571429	(0.523,0.58]	chr17	693423	3	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	1530	2	7.95343	8.830425	9.70742	5.56486e-6	6.87658e-9	0.00142967	4.21173e-6
chr16	89914099	89914194	6526317	0	+	0.484211	(0.45,0.485]	chr16	647716	6	UTR5	UTR5:EXON_MRNA:INTRON	ENSG00000267048:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000539976.1:ENST00000555427.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	1	1670	2	8.34207	8.829765	9.31746	1.77575e-5	2.94369e-9	0.00242017	2.50955e-6
chr3	13024195	13024295	1689378	0	-	0.38	(0.36,0.39]	chr3	176542	17	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	0	720	2	8.78113	8.829619999999998	8.87811	8.21855e-5	3.27792e-7	0.00502313	5.02249e-5
chr16	81615409	81615508	6509450	0	+	0.464646	(0.45,0.485]	chr16	645921	45	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	736	2	8.52976	8.82803	9.1263	2.6564e-5	5.1986e-7	0.00292723	6.79442e-5
chr11	68421795	68421895	4883188	0	+	0.6	(0.58,1]	chr11	470622	49	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	742	2	8.30458	8.82554	9.3465	2.38739e-6	1.82441e-7	0.00111233	3.43389e-5
chr9	124491628	124491728	4402639	0	-	0.58	(0.523,0.58]	chr9	419810	4	SS3_PROX	SS3_PROX:INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	0	704	2	8.61903	8.82434	9.02965	5.86504e-5	6.06512e-8	0.00425087	1.67471e-5
chr21	42848334	42848433	7675455	0	-	0.626263	(0.58,1]	chr21	802287	47	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	5	6843	2	8.74943	8.823685000000001	8.89794	6.94594e-8	1.01386e-12	3.25904e-4	1.89192e-8
chr13	98278398	98278498	5635015	0	+	0.45	(0.419,0.45]	chr13	553480	332	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	1	1644	2	7.48238	8.82104	10.1597	7.58329e-6	1.25512e-7	0.00166511	2.69399e-5
chr17	77215771	77215868	6803132	0	+	0.525773	(0.523,0.58]	chr17	686684	19	UTR3	UTR3:EXON_MRNA:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	0	707	2	8.69314	8.818010000000001	8.94288	2.92886e-5	1.91705e-7	0.0030467	3.55758e-5
chr5	1465578	1465674	2609379	0	-	0.5	(0.485,0.523]	chr5	259790	14	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000503252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	927	2	7.77666	8.81734	9.85802	4.41961e-6	3.93137e-6	0.00122973	2.8801e-4
chr6	144530751	144530851	3022363	0	+	0.48	(0.45,0.485]	chr6	295375	3	SS3_PROX	SS3_PROX:INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8	protein_coding	protein_coding	protein_coding	protein_coding	0	714	2	8.66159	8.8155	8.96941	3.69212e-5	3.37165e-7	0.00335179	5.11522e-5
chr20	8275201	8275301	7428014	0	+	0.48	(0.45,0.485]	chr20	773686	184	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	2186	2	6.85832	8.81526	10.7722	7.96179e-7	8.91918e-8	7.94453e-4	2.19962e-5
chr20	63732818	63732918	7509367	0	+	0.45	(0.419,0.45]	chr20	783516	2	SS3_PROX	SS3_PROX:INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	1648	2	8.05039	8.812115	9.57384	2.40449e-5	2.08083e-8	0.00282418	8.40064e-6
chr11	497182	497278	4968418	0	-	0.572917	(0.523,0.58]	chr11	480490	18	INTRON	INTRON	RNH1	ENSG00000023191.17	ENST00000534797.5:ENST00000397614.5:ENST00000397604.7:ENST00000354420.7:ENST00000397615.6:ENST00000525522.5:ENST00000525701.5:ENST00000529768.5:ENST00000533410.5:ENST00000438658.6:ENST00000356187.9:ENST00000524464.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	731	2	8.25878	8.811335	9.36389	1.25899e-4	1.91416e-8	0.00622155	8.05704e-6
chr10	75728447	75728547	4523448	0	+	0.47	(0.45,0.485]	chr10	432271	805	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	750	2	8.18645	8.810465	9.43448	1.86652e-4	2.57426e-8	0.00769604	9.78139e-6
chr2	74476026	74476126	1193461	0	-	0.55	(0.523,0.58]	chr2	129669	3	SS3_PROX	SS3_PROX:INTRON	CCDC142	ENSG00000135637.14	ENST00000454193.5:ENST00000393965.8:ENST00000290418.4:ENST00000497232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	717	2	8.54153	8.8097	9.07787	2.18885e-5	3.20686e-7	0.0027064	4.95473e-5
chr16	1739997	1740095	6371339	0	+	0.612245	(0.58,1]	chr16	628851	46	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	668	2	8.6949	8.80443	8.91396	1.20051e-5	1.86681e-8	0.00201743	7.87747e-6
chr20	44402053	44402135	7482933	0	+	0.463415	(0.45,0.485]	chr20	779635	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000682427.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	702	2	8.55188	8.802815	9.05375	8.80768e-5	9.19998e-8	0.00521027	2.22053e-5
chr17	15465362	15465461	6860088	0	-	0.474747	(0.45,0.485]	chr17	695067	119	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	699	2	8.76895	8.8004	8.83185	4.92242e-5	2.36643e-7	0.00386147	4.06373e-5
chrX	9569040	9569140	7843490	0	+	0.5	(0.485,0.523]	chrX	822423	81	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	690	2	8.6844	8.7979	8.9114	5.03011e-5	1.00812e-7	0.00392322	2.3353e-5
chr2	3221240	3221340	1080313	0	-	0.53	(0.523,0.58]	chr2	117609	66	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000482570.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	1537	2	8.15535	8.795445	9.43554	1.00736e-5	3.39077e-9	0.00187093	2.69889e-6
chr13	98278098	98278198	5635012	0	+	0.44	(0.419,0.45]	chr13	553480	329	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	1	1806	2	6.96271	8.793105	10.6235	3.02418e-6	6.39041e-7	0.00112905	7.8339e-5
chr16	81544581	81544681	6508739	0	+	0.54	(0.523,0.58]	chr16	645911	487	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	724	2	8.41344	8.792425	9.17141	1.7878e-5	4.94192e-7	0.00242217	6.59235e-5
chr6	158020587	158020687	3059698	0	+	0.55	(0.523,0.58]	chr6	297373	24	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	0	687	2	8.79003	8.79028	8.79053	4.06812e-5	1.37568e-7	0.00354247	2.85586e-5
chrX	44899185	44899285	7871933	0	+	0.52	(0.485,0.523]	chrX	825082	248	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	686	2	8.71373	8.78958	8.86543	4.72378e-5	1.17868e-7	0.00379612	2.59103e-5
chr15	60542409	60542509	6284943	0	-	0.6	(0.58,1]	chr15	619503	102	INTRON	INTRON	RORA	ENSG00000069667.16	ENST00000335670.11:ENST00000261523.9:ENST00000309157.8:ENST00000449337.6:ENST00000551975.5:ENST00000560004.5:ENST00000559343.1:ENST00000558234.1:ENST00000557822.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	726	2	8.25131	8.78778	9.32425	2.52378e-6	2.22105e-7	0.00111692	3.91312e-5
chr8	38769094	38769194	3802246	0	+	0.51	(0.485,0.523]	chr8	365828	113	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	1492	2	7.61319	8.787195	9.9612	3.13387e-6	2.46888e-8	0.00115445	9.49156e-6
chr22	25459681	25459779	7701139	0	+	0.510204	(0.485,0.523]	chr22	805970	1	SS5_PROX	SS5_PROX:INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000382734.10:ENST00000686640.1:ENST00000509460.3:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	1531	2	7.37913	8.782365	10.1856	1.91189e-6	5.53133e-8	0.00101453	1.58177e-5
chr10	127261823	127261923	4610545	0	+	0.56	(0.523,0.58]	chr10	440799	40	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2:ENST00000484400.5:ENST00000464466.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	709	2	8.28133	8.78233	9.28333	1.20056e-4	2.52963e-8	0.00607292	9.67746e-6
chr16	1736058	1736156	6371299	0	+	0.571429	(0.523,0.58]	chr16	628851	6	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	684	2	8.5649	8.781915	8.99893	6.58255e-5	6.74008e-8	0.00450708	1.81696e-5
chr1	48226969	48227068	120969	0	+	0.454545	(0.45,0.485]	chr1	15165	18	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	685	2	8.72138	8.77598	8.83058	6.19644e-5	1.93011e-7	0.00437718	3.57392e-5
chr1	3470093	3470187	5809	0	+	0.62766	(0.58,1]	chr1	1229	1	INTRON	INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5	protein_coding	protein_coding	protein_coding	protein_coding	0	742	2	8.13848	8.774865	9.41125	2.03066e-6	3.3638e-7	0.0010404	5.10793e-5
chr16	81679227	81679327	6510103	0	+	0.49	(0.485,0.523]	chr16	645979	2	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	1	1838	2	7.67444	8.774455	9.87447	4.49697e-6	3.66778e-9	0.00130045	2.8754e-6
chr12	132951558	132951658	5542047	0	-	0.46	(0.45,0.485]	chr12	547064	29	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	689	2	8.50976	8.774335	9.03891	9.60894e-5	9.66614e-8	0.0054806	2.27684e-5
chrX	44899085	44899185	7871932	0	+	0.42	(0.419,0.45]	chrX	825082	247	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	697	2	8.7679	8.771844999999999	8.77579	1.15322e-4	5.87556e-7	0.00597714	7.37598e-5
chr2	3221140	3221240	1080312	0	-	0.54	(0.523,0.58]	chr2	117609	65	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000482570.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	1506	2	8.10978	8.7714	9.43302	1.0129e-5	3.97819e-9	0.0018733999999999999	2.98268e-6
chr13	113521133	113521233	5658490	0	+	0.5	(0.485,0.523]	chr13	555715	4	SS5_PROX	SS5_PROX:INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	683	2	8.66532	8.769905	8.87449	3.34431e-5	2.32155e-7	0.00320976	4.0154e-5
chr6	158020487	158020587	3059697	0	+	0.49	(0.485,0.523]	chr6	297373	23	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	0	684	2	8.45056	8.768055	9.08555	8.28355e-5	5.56622e-8	0.00504759	1.58177e-5
chr17	15465062	15465162	6860085	0	-	0.47	(0.45,0.485]	chr17	695067	116	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	682	2	8.76579	8.76737	8.76895	5.64926e-5	2.36643e-7	0.00418116	4.06373e-5
chr9	4714185	4714283	4269912	0	-	0.438776	(0.419,0.45]	chr9	407900	7	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	0	706	2	8.41018	8.76706	9.12394	2.28825e-4	1.99124e-7	0.00852546	3.63896e-5
chr5	882350	882447	2608199	0	-	0.556701	(0.523,0.58]	chr5	259472	13	EXON_MRNA	EXON_MRNA:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	694	2	8.32542	8.766765	9.20811	1.09393e-4	3.28028e-8	0.00583571	1.1359e-5
chr22	42987432	42987532	7824007	0	-	0.52	(0.485,0.523]	chr22	820626	277	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	679	2	8.70383	8.766545	8.82926	3.68613e-5	2.03832e-7	0.00335179	3.677e-5
chr11	121478743	121478842	4953920	0	+	0.494949	(0.485,0.523]	chr11	478664	1	INTRON	INTRON	SORL1	ENSG00000137642.13	ENST00000260197.12:ENST00000532451.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	785	2	8.01735	8.756219999999999	9.49509	8.70322e-6	2.01411e-6	0.00178362	1.67291e-4
chr1	58658905	58659004	496195	0	-	0.373737	(0.36,0.39]	chr1	59127	43	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MYSM1	ENSG00000162601.11	ENST00000655340.1:ENST00000493821.6:ENST00000472487.6:ENST00000622766.1:ENST00000665648.1:ENST00000659812.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	686	2	8.7269	8.75596	8.78502	8.15491e-5	5.28105e-7	0.00501721	6.87544e-5
chr17	81074772	81074871	6813768	0	+	0.50505	(0.485,0.523]	chr17	688114	106	INTRON	INTRON	BAIAP2	ENSG00000175866.16	ENST00000321280.11:ENST00000576470.5:ENST00000575750.5:ENST00000428708.7:ENST00000572329.5:ENST00000575989.5:ENST00000570913.5:ENST00000575712.5:ENST00000575245.5:ENST00000321300.10:ENST00000435091.7:ENST00000573894.5:ENST00000571530.5:ENST00000572918.5:ENST00000573017.5:ENST00000575958.5:ENST00000573659.5:ENST00000572073.5:ENST00000573677.5:ENST00000574804.5:ENST00000576364.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	670	2	8.68016	8.755605	8.83105	5.07597e-5	1.32465e-7	0.00393832	2.7946e-5
chr4	887462	887561	2178477	0	-	0.565657	(0.523,0.58]	chr4	220626	18	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	1446	2	7.67126	8.754025	9.83679	4.19195e-6	1.84052e-8	0.00126679	7.78607e-6
chr16	1739800	1739898	6371337	0	+	0.612245	(0.58,1]	chr16	628851	44	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	644	2	8.63742	8.75173	8.86604	1.38245e-5	2.23715e-8	0.00217358	8.84048e-6
chr11	497374	497470	4968420	0	-	0.59375	(0.58,1]	chr11	480490	20	INTRON	INTRON	RNH1	ENSG00000023191.17	ENST00000534797.5:ENST00000397614.5:ENST00000397604.7:ENST00000354420.7:ENST00000397615.6:ENST00000525522.5:ENST00000525701.5:ENST00000529768.5:ENST00000533410.5:ENST00000438658.6:ENST00000356187.9:ENST00000524464.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	664	2	8.28679	8.750675000000001	9.21456	3.2494e-5	5.96611e-9	0.00318677	3.88366e-6
chr19	6678555	6678624	7322502	0	-	0.507246	(0.485,0.523]	chr19	756370	1	SS3_PROX	SS3_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000599899.5:ENST00000695690.1:ENST00000695691.1:ENST00000695689.1:ENST00000695653.1:ENST00000695654.1:ENST00000602229.1:ENST00000599668.1:ENST00000601008.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	682	2	8.35805	8.750395000000001	9.14274	1.00792e-4	4.5773e-8	0.00560072	1.42359e-5
chr4	887066	887165	2178473	0	-	0.606061	(0.58,1]	chr4	220626	14	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	1599	2	7.17173	8.749414999999999	10.3271	3.75814e-6	8.23931e-11	0.00122199	3.64147e-7
chr13	112873161	112873251	5654404	0	+	0.533333	(0.523,0.58]	chr13	555053	2	SS3_PROX	SS3_PROX:INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000471555.5:ENST00000415301.2:ENST00000419631.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	671	2	8.47968	8.748944999999999	9.01821	7.89055e-5	6.30833e-8	0.00494046	1.72724e-5
chr16	1736550	1736649	6371304	0	+	0.606061	(0.58,1]	chr16	628851	11	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	644	2	8.53459	8.747465	8.96034	1.77818e-5	1.56649e-8	0.00242017	6.99695e-6
chr21	45452624	45452723	7630789	0	+	0.393939	(0.39,0.419]	chr21	797656	468	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	687	2	8.45767	8.74713	9.03659	1.63061e-4	2.01879e-7	0.00716861	3.6561e-5
chr17	81074474	81074573	6813765	0	+	0.545455	(0.523,0.58]	chr17	688114	103	INTRON	INTRON	BAIAP2	ENSG00000175866.16	ENST00000321280.11:ENST00000576470.5:ENST00000575750.5:ENST00000428708.7:ENST00000572329.5:ENST00000575989.5:ENST00000570913.5:ENST00000575712.5:ENST00000575245.5:ENST00000321300.10:ENST00000435091.7:ENST00000573894.5:ENST00000571530.5:ENST00000572918.5:ENST00000573017.5:ENST00000575958.5:ENST00000573659.5:ENST00000572073.5:ENST00000573677.5:ENST00000574804.5:ENST00000576364.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	665	2	8.6497	8.74653	8.84336	5.49338e-5	1.14854e-7	0.00410498	2.57534e-5
chr14	39297593	39297691	5792490	0	+	0.520408	(0.485,0.523]	chr14	567538	22	INTRON	INTRON	MIA2	ENSG00000150527.18	ENST00000553728.1:ENST00000640607.2:ENST00000341749.7:ENST00000557038.5:ENST00000396165.8:ENST00000396158.6:ENST00000280083.7:ENST00000341502.9:ENST00000556148.5:ENST00000348007.7:ENST00000553352.1	protein_coding	protein_coding	protein_coding	protein_coding	0	666	2	8.69704	8.746435	8.79583	4.89573e-5	1.49276e-7	0.00385211	2.99526e-5
chr16	67915081	67915181	6473549	0	+	0.5	(0.485,0.523]	chr16	642897	50	INTRON	INTRON	PSKH1	ENSG00000159792.10	ENST00000291041.6	protein_coding	protein_coding	protein_coding	protein_coding	0	668	2	8.69907	8.744765000000001	8.79046	4.00672e-5	2.07137e-7	0.00351956	3.72063e-5
chr7	139704443	139704543	3723190	0	-	0.55	(0.523,0.58]	chr7	357498	724	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	676	2	8.56793	8.744715	8.9215	3.06687e-5	2.93262e-7	0.00310406	4.65962e-5
chr6	158020188	158020288	3059694	0	+	0.62	(0.58,1]	chr6	297373	20	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	0	640	2	8.59623	8.742125	8.88802	1.52926e-5	2.05902e-8	0.00223783	8.35275e-6
chr20	62278862	62278960	7506897	0	+	0.469388	(0.45,0.485]	chr20	782713	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3:ENST00000620616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	675	2	8.62727	8.740865	8.85446	4.69548e-5	3.77473e-7	0.00378817	5.51827e-5
chr5	1464621	1464717	2609369	0	-	0.5	(0.485,0.523]	chr5	259790	4	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000503252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	891	2	7.66399	8.738125	9.81226	6.36096e-6	4.34671e-6	0.00128014	3.73792e-4
chr1	12583751	12583850	402440	0	-	0.545455	(0.523,0.58]	chr1	46222	27	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	683	2	8.45364	8.73616	9.01868	2.48729e-5	4.31567e-7	0.00285743	6.02995e-5
chr8	133288059	133288159	4084205	0	-	0.38	(0.36,0.39]	chr8	388351	4	SS5_PROX	SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000676005.1:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1:ENST00000674839.1:ENST00000676064.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	1072	2	7.32356	8.73578	10.148	3.8237e-5	5.16118e-6	0.00138171	0.00134713
chr16	1739406	1739504	6371333	0	+	0.612245	(0.58,1]	chr16	628851	40	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	640	2	8.48531	8.735165	8.98502	2.00555e-5	1.42675e-8	0.00259493	6.63759e-6
chr5	177090040	177090137	2597790	0	+	0.546392	(0.523,0.58]	chr5	257901	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FGFR4	ENSG00000160867.15	ENST00000393648.6:ENST00000503708.5:ENST00000502906.5:ENST00000514472.1:ENST00000292408.9:ENST00000507708.1:ENST00000510911.5:ENST00000513166.1:ENST00000393637.5:ENST00000430285.5:ENST00000426612.5:ENST00000509511.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	1906	2	7.35173	8.734815000000001	10.1179	2.26131e-6	1.06512e-8	0.00111233	5.62522e-6
chr19	2336315	2336415	7189484	0	+	0.42	(0.419,0.45]	chr19	731782	12	INTRON	INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	681	2	8.51177	8.73413	8.95649	1.88515e-4	3.3551e-7	0.0077446	5.10395e-5
chr16	2165166	2165261	6372954	0	+	0.621053	(0.58,1]	chr16	629424	8	INTRON	INTRON	TRAF7	ENSG00000131653.13	ENST00000565383.5:ENST00000569686.5:ENST00000326181.11:ENST00000567653.5:ENST00000564067.5:ENST00000567645.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	1339	2	8.01165	8.733535	9.45542	1.8182e-6	1.20584e-9	9.94411e-4	1.48908e-6
chr21	45500736	45500835	7631312	0	+	0.555556	(0.523,0.58]	chr21	797812	27	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	0	689	2	8.38995	8.732295	9.07464	2.20416e-5	5.34849e-7	0.00272155	6.93635e-5
chr16	85589929	85590029	6518972	0	+	0.46	(0.45,0.485]	chr16	646396	332	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	663	2	8.62822	8.7294	8.83058	7.51931e-5	1.93011e-7	0.00484351	3.57392e-5
chr2	78079146	78079246	1208241	0	-	0.49	(0.485,0.523]	chr2	130071	1389	INTRON	INTRON	ENSG00000227088	ENSG00000227088.2	ENST00000667782.1	lncRNA	lncRNA	lncRNA	lncRNA	0	660	2	8.67019	8.726379999999999	8.78257	4.07518e-5	2.28369e-7	0.00354247	3.97035e-5
chr1	23392583	23392683	424241	0	-	0.46	(0.45,0.485]	chr1	49807	48	INTRON	INTRON	TCEA3	ENSG00000204219.11	ENST00000450454.7:ENST00000476978.2	protein_coding	protein_coding	protein_coding	protein_coding	3	2343	2	7.19205	8.723675	10.2553	2.41439e-6	1.27291e-8	0.00111233	6.22717e-6
chr1	1052882	1052978	1293	0	+	0.489583	(0.485,0.523]	chr1	283	10	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	1446	2	7.42416	8.72348	10.0228	2.73698e-6	4.7376e-8	0.00111925	1.45439e-5
chr16	1736353	1736452	6371302	0	+	0.616162	(0.58,1]	chr16	628851	9	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	636	2	8.44464	8.72294	9.00124	2.21459e-5	1.34171e-8	0.00272688	6.40158e-6
chrX	315799	315886	7964853	0	-	0.494253	(0.485,0.523]	chrX	834136	1	INTRON	INTRON	GTPBP6	ENSG00000178605.13	ENST00000326153.9	protein_coding	protein_coding	protein_coding	protein_coding	0	656	2	8.53748	8.722380000000001	8.90728	6.88469e-5	1.02235e-7	0.00463913	2.3585e-5
chr17	80224436	80224536	6806863	0	+	0.5	(0.485,0.523]	chr17	687275	7	INTRON	INTRON	SLC26A11	ENSG00000181045.15	ENST00000361193.8:ENST00000546047.6:ENST00000411502.7:ENST00000571888.5:ENST00000576126.5:ENST00000572725.5:ENST00000571564.5:ENST00000571176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	656	2	8.71801	8.722065	8.72612	4.59997e-5	1.94289e-7	0.00374159	3.58572e-5
chr16	85589729	85589829	6518970	0	+	0.39	(0.36,0.39]	chr16	646396	330	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	668	2	8.68016	8.721525	8.76289	1.00498e-4	4.71536e-7	0.00560072	6.38135e-5
chr20	47257406	47257505	7569888	0	-	0.333333	(0.33,0.36]	chr20	791018	76	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	661	2	8.56797	8.716000000000001	8.86403	9.14373e-5	2.51489e-7	0.0053051	4.20683e-5
chr7	55068039	55068139	3372036	0	+	0.51	(0.485,0.523]	chr7	325289	241	INTRON	INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000463948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	669	2	8.47805	8.715969999999999	8.95389	2.81825e-5	4.36004e-7	0.00299811	6.06168e-5
chr2	175073428	175073526	1321454	0	-	0.44898	(0.419,0.45]	chr2	141112	13	UTR3	UTR3:EXON_MRNA	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5	protein_coding	protein_coding	protein_coding	protein_coding	2	2085	2	6.84282	8.71566	10.5885	3.24191e-6	2.11809e-7	0.00116565	3.78431e-5
chr5	1464813	1464908	2609371	0	-	0.442105	(0.419,0.45]	chr5	259790	6	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000503252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	862	2	7.73024	8.71519	9.70014	1.87641e-5	1.39662e-5	0.00249961	6.48662e-4
chr18	13445436	13445534	7025030	0	+	0.479592	(0.45,0.485]	chr18	717583	12	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000610087.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	682	2	8.40217	8.714559999999999	9.02695	3.27268e-5	7.88907e-7	0.00320213	8.99135e-5
chr17	7174760	7174860	6847818	0	-	0.46	(0.45,0.485]	chr17	693456	3	SS3_PROX	SS3_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	1	1441	2	7.54456	8.71355	9.88254	5.35387e-6	4.3834e-8	0.00140527	1.38506e-5
chr15	60542608	60542708	6284945	0	-	0.63	(0.58,1]	chr15	619503	104	INTRON	INTRON	RORA	ENSG00000069667.16	ENST00000335670.11:ENST00000261523.9:ENST00000309157.8:ENST00000449337.6:ENST00000551975.5:ENST00000560004.5:ENST00000559343.1:ENST00000558234.1:ENST00000557822.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	1406	2	7.19081	8.712855	10.2349	2.55271e-7	2.79193e-8	6.50198e-4	1.02606e-5
chr13	29519949	29520049	5677206	0	-	0.47	(0.45,0.485]	chr13	557614	4	SS3_PROX	SS3_PROX:INTRON	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	0	680	2	8.22745	8.712579999999999	9.19771	1.7166e-4	5.69128e-8	0.00733109	1.60424e-5
chr10	127261024	127261124	4610537	0	+	0.51	(0.485,0.523]	chr10	440799	32	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2:ENST00000484400.5:ENST00000464466.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	681	2	8.17736	8.712415	9.24747	1.47565e-4	3.19681e-8	0.0067648	1.11852e-5
chr13	97346104	97346203	5632046	0	+	0.393939	(0.39,0.419]	chr13	553194	25	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	663	2	8.6577	8.710004999999999	8.76231	1.09924e-4	4.80188e-7	0.00585043	6.4465e-5
chr7	137999358	137999458	3720696	0	-	0.42	(0.419,0.45]	chr7	357307	656	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5	protein_coding	protein_coding	protein_coding	protein_coding	0	679	2	8.50727	8.70832	8.90937	8.77666e-5	1.34312e-6	0.00519882	1.27514e-4
chr1	23392683	23392782	424242	0	-	0.454545	(0.45,0.485]	chr1	49807	49	INTRON	INTRON	TCEA3	ENSG00000204219.11	ENST00000450454.7:ENST00000476978.2	protein_coding	protein_coding	protein_coding	protein_coding	0	658	2	8.43172	8.70678	8.98184	1.12877e-4	1.16869e-7	0.00593499	2.59103e-5
chr19	7153127	7153227	7323798	0	-	0.53	(0.523,0.58]	chr19	756779	2	SS3_PROX	SS3_PROX:INTRON	INSR	ENSG00000171105.14	ENST00000341500.9:ENST00000302850.10:ENST00000598216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	754	2	7.97438	8.703700000000001	9.43302	1.0129e-5	2.13789e-6	0.0018733999999999999	1.744e-4
chr1	67409308	67409408	505873	0	-	0.38	(0.36,0.39]	chr1	60117	16	UTR3	UTR3:EXON_MRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11	protein_coding	protein_coding	protein_coding	protein_coding	0	660	2	8.69265	8.70291	8.71317	9.80301e-5	5.51415e-7	0.00553563	7.06931e-5
chr11	497570	497670	4968422	0	-	0.57	(0.523,0.58]	chr11	480491	2	SS5_PROX	SS5_PROX:INTRON	RNH1	ENSG00000023191.17	ENST00000534797.5:ENST00000397614.5:ENST00000397604.7:ENST00000354420.7:ENST00000397615.6:ENST00000525522.5:ENST00000525701.5:ENST00000529768.5:ENST00000533410.5:ENST00000438658.6:ENST00000356187.9:ENST00000524464.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	679	2	8.12174	8.69774	9.27374	1.67878e-4	2.61492e-8	0.00724399	9.8911e-6
chr22	46290585	46290678	7743256	0	+	0.645161	(0.58,1]	chr22	811892	3	INTRON	INTRON	TTC38	ENSG00000075234.17	ENST00000381031.8:ENST00000451998.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	697	2	8.08621	8.696774999999999	9.30734	2.63261e-6	4.0741e-7	0.00111692	5.79223e-5
chr20	26010081	26010178	7452324	0	+	0.57732000000000006	(0.523,0.58]	chr20	775551	4	EXON_LNCRNA	EXON_LNCRNA	ENSG00000287569	ENSG00000287569.1	ENST00000668826.1	lncRNA	lncRNA	lncRNA	lncRNA	1	1387	2	7.63953	8.695015	9.7505	5.0642e-6	2.05531e-8	0.00136394	8.35275e-6
chr7	222746	222845	3305882	0	+	0.494949	(0.485,0.523]	chr7	320161	134	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	647	2	8.42545	8.694675	8.9639	8.73719e-5	8.4308e-8	0.00518923	2.12282e-5
chr21	45453023	45453123	7630793	0	+	0.38	(0.36,0.39]	chr21	797656	472	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	658	2	8.46391	8.69322	8.92253	1.54282e-4	2.84819e-7	0.00691846	4.56433e-5
chr7	92659561	92659660	3637192	0	-	0.434343	(0.419,0.45]	chr7	350304	174	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	0	660	2	8.68552	8.692675000000001	8.69983	1.31463e-4	7.76456e-7	0.00636246	8.88302e-5
chr20	63731520	63731620	7509354	0	+	0.46	(0.45,0.485]	chr20	783515	220	INTRON	INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	1765	2	6.83037	8.689835	10.5493	3.63702e-5	5.88657e-10	0.0033235	9.69242e-7
chr16	1735762	1735861	6371296	0	+	0.59596	(0.58,1]	chr16	628851	3	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	625	2	8.35421	8.689725	9.02524	2.75934e-5	1.22507e-8	0.00296016	6.09433e-6
chr13	50560219	50560319	5598227	0	+	0.47	(0.45,0.485]	chr13	551685	265	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1:ENST00000484869.6	lncRNA	lncRNA	lncRNA	lncRNA	0	695	2	8.21014	8.688075000000001	9.16601	2.44354e-5	1.47201e-6	0.00284264	1.35091e-4
chr7	101853551	101853651	3434344	0	+	0.49	(0.485,0.523]	chr7	332510	342	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	639	2	8.6283	8.687125	8.74595	5.6716e-5	1.76756e-7	0.00418207	3.36262e-5
chr17	40019096	40019182	6898785	0	-	0.383721	(0.36,0.39]	chr17	700878	1	UTR3	UTR3:EXON_MRNA	MED24	ENSG00000008838.21	ENST00000394126.5:ENST00000356271.7:ENST00000394128.7:ENST00000394127.6:ENST00000491466.5:ENST00000535508.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	693	2	8.08857	8.685845	9.28312	3.22064e-4	9.04899e-8	0.0102338	2.20572e-5
chr16	29270913	29271013	6433546	0	+	0.49	(0.485,0.523]	chr16	636745	188	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	689	2	8.20356	8.68468	9.1658	1.78193e-5	1.08921e-6	0.00242158	1.10265e-4
chr1	43596950	43597049	107420	0	+	0.454545	(0.45,0.485]	chr1	13240	40	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	0	647	2	8.4267	8.6846	8.9425	1.14051e-4	1.33187e-7	0.00596205	2.79952e-5
chr20	34566052	34566151	7547088	0	-	0.585859	(0.58,1]	chr20	787854	47	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	0	614	2	8.60087	8.683005000000001	8.76514	1.512e-5	3.27193e-8	0.00223783	1.1359e-5
chr9	134339734	134339833	4260820	0	+	0.525253	(0.523,0.58]	chr9	406311	127	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	647	2	8.49275	8.679685	8.86662	3.45121e-5	3.78188e-7	0.00326132	5.51827e-5
chr14	89181006	89181106	6025901	0	-	0.54	(0.523,0.58]	chr14	591408	2	SS3_PROX	SS3_PROX:INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000556541.1:ENST00000555010.1:ENST00000557496.1:ENST00000557718.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	634	2	8.66265	8.675495	8.68834	5.34354e-5	1.94865e-7	0.00405763	3.58846e-5
chr21	45500538	45500637	7631310	0	+	0.535354	(0.523,0.58]	chr21	797812	25	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	0	662	2	8.32951	8.674095000000001	9.01868	2.48729e-5	6.5531e-7	0.00285743	7.93487e-5
chr19	47229934	47230032	7392381	0	-	0.510204	(0.485,0.523]	chr19	768106	11	INTRON	INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	0	636	2	8.42545	8.672525	8.9196	8.73719e-5	9.80366e-8	0.00518923	2.29635e-5
chr2	138420184	138420284	1277670	0	-	0.42	(0.419,0.45]	chr2	137676	13	INTRON	INTRON	SPOPL-DT	ENSG00000228043.5	ENST00000431985.5	lncRNA	lncRNA	lncRNA	lncRNA	0	666	2	8.26254	8.67232	9.0821	3.02861e-4	2.269e-7	0.00988096	3.96947e-5
chr20	64021470	64021568	7510616	0	+	0.55102	(0.523,0.58]	chr20	783726	43	INTRON	INTRON	PRPF6	ENSG00000101161.8	ENST00000266079.5	protein_coding	protein_coding	protein_coding	protein_coding	1	1657	2	7.27693	8.672315000000001	10.0677	1.09108e-5	1.64657e-9	0.00194719	1.8193e-6
chr20	63732218	63732318	7509361	0	+	0.61	(0.58,1]	chr20	783515	227	INTRON	INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	1503	2	7.28408	8.67064	10.0572	2.83625e-6	2.34403e-10	0.00112513	5.72821e-7
chr5	97030628	97030728	2489686	0	+	0.41	(0.39,0.419]	chr5	248102	22	UTR3	UTR3:EXON_MRNA	LNPEP	ENSG00000113441.16	ENST00000231368.10	protein_coding	protein_coding	protein_coding	protein_coding	0	656	2	8.31422	8.669875000000001	9.02553	2.15982e-4	2.09086e-7	0.00831529	3.75161e-5
chr12	132779998	132780097	5540251	0	-	0.626263	(0.58,1]	chr12	546769	18	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	630	2	8.38715	8.66972	8.95229	6.36341e-6	1.34369e-7	0.00153039	2.8138e-5
chr2	63026242	63026342	817189	0	+	0.45	(0.419,0.45]	chr2	92205	291	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000496857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	1501	2	7.21668	8.66624	10.1158	8.27061e-6	2.89135e-7	0.00174305	4.61589e-5
chr4	3362997	3363097	2005066	0	+	0.52	(0.485,0.523]	chr4	204663	196	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	633	2	8.37389	8.66092	8.94795	9.74674e-5	8.90166e-8	0.00552067	2.19853e-5
chr17	67355922	67356019	6958949	0	-	0.515464	(0.485,0.523]	chr17	709765	1	INTRON	INTRON	PSMD12	ENSG00000197170.10	ENST00000356126.8:ENST00000357146.4:ENST00000584008.5:ENST00000584289.5:ENST00000581618.1:ENST00000579365.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	636	2	8.511	8.660495000000001	8.80999	3.84205e-5	3.90361e-7	0.00344738	5.64502e-5
chr1	43560419	43560519	107043	0	+	0.61	(0.58,1]	chr1	13192	61	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	1295	2	7.35207	8.66047	9.96887	5.0014e-7	1.51263e-8	7.30832e-4	6.8882e-6
chr20	62278175	62278275	7506890	0	+	0.52	(0.485,0.523]	chr20	782712	44	INTRON	INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	632	2	8.56951	8.66005	8.75059	4.36482e-5	3.2065e-7	0.00366399	4.95473e-5
chr17	77350998	77351098	6803869	0	+	0.54	(0.523,0.58]	chr17	686742	268	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	630	2	8.58871	8.65925	8.72979	4.62864e-5	2.73321e-7	0.00374781	4.43081e-5
chr9	134339833	134339933	4260821	0	+	0.51	(0.485,0.523]	chr9	406311	128	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	644	2	8.4098	8.658650000000002	8.9075	3.11475e-5	5.47981e-7	0.00310936	7.03603e-5
chrX	315599	315699	7964851	0	-	0.5	(0.485,0.523]	chrX	834135	3	SS3_PROX	SS3_PROX:INTRON	GTPBP6	ENSG00000178605.13	ENST00000326153.9	protein_coding	protein_coding	protein_coding	protein_coding	2	1809	2	7.23021	8.654405	10.0786	2.4205e-6	1.78949e-8	0.00111233	7.66678e-6
chr2	239371301	239371401	1392425	0	-	0.39	(0.36,0.39]	chr2	148759	180	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	641	2	8.40944	8.653955	8.89847	1.71789e-4	3.07351e-7	0.00733109	4.81964e-5
chr14	68899572	68899670	5999335	0	-	0.5	(0.485,0.523]	chr14	588704	55	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	647	2	8.35641	8.653395	8.95038	2.83971e-5	6.55004e-7	0.00300073	7.93487e-5
chr1	31578188	31578288	81026	0	+	0.44	(0.419,0.45]	chr1	9278	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LINC01226:TINAGL1	ENSG00000284543.1:ENSG00000142910.16	ENST00000639839.1:ENST00000640226.1:ENST00000457433.6:ENST00000271064.12:ENST00000461030.5:ENST00000478398.5:ENST00000481165.5:ENST00000537531.2:ENST00000468635.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	867	2	7.55778	8.652155	9.74653	2.31803e-5	1.71284e-5	0.00237845	9.36605e-4
chr16	29273612	29273712	6433573	0	+	0.43	(0.419,0.45]	chr16	636745	215	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	657	2	8.40915	8.65213	8.89511	9.02191e-5	1.81336e-6	0.00526893	1.55823e-4
chr16	87739225	87739325	6656473	0	-	0.55	(0.523,0.58]	chr16	665892	82	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	624	2	8.46004	8.6517	8.84336	8.22652e-5	1.14854e-7	0.00502313	2.57534e-5
chr17	50461885	50461984	6752058	0	+	0.545455	(0.523,0.58]	chr17	680706	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACSF2	ENSG00000167107.13	ENST00000510410.5:ENST00000300441.9:ENST00000504392.5:ENST00000506582.5:ENST00000427954.6:ENST00000502667.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	624	2	8.64931	8.65167	8.65403	5.44283e-5	2.22514e-7	0.00408776	3.91312e-5
chr1	1340903	1341003	381185	0	-	0.58	(0.523,0.58]	chr1	43161	4	SS3_PROX	SS3_PROX:INTRON	DVL1	ENSG00000107404.21	ENST00000378891.9:ENST00000378888.10	protein_coding	protein_coding	protein_coding	protein_coding	0	626	2	8.3943	8.650545000000001	8.90679	9.45666e-5	9.2447e-8	0.00542848	2.22437e-5
chr12	132536551	132536651	5352981	0	+	0.49	(0.485,0.523]	chr12	523670	82	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	1351	2	7.72139	8.649280000000001	9.57717	7.27444e-6	1.69839e-8	0.00162532	7.33261e-6
chr7	73598113	73598213	3602837	0	-	0.43	(0.419,0.45]	chr7	347627	4	SS3_PROX	SS3_PROX:INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	639	2	8.51177	8.64814	8.78451	1.88515e-4	5.71915e-7	0.0077446	7.24911e-5
chr2	241698459	241698558	1078390	0	+	0.393939	(0.39,0.419]	chr2	117220	43	INTRON	INTRON	ING5	ENSG00000168395.16	ENST00000636051.1	protein_coding	protein_coding	protein_coding	protein_coding	0	664	2	8.2941	8.64705	9	5.56701e-5	2.07058e-6	0.00414032	1.70547e-4
chr17	356396	356496	6821857	0	-	0.53	(0.523,0.58]	chr17	689641	34	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	0	624	2	8.38912	8.64588	8.90264	9.561e-5	9.3768e-8	0.00546375	2.24672e-5
chr9	131587040	131587137	4418987	0	-	0.57732000000000006	(0.523,0.58]	chr9	421909	21	INTRON	INTRON	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000372189.7:ENST00000683357.1:ENST00000372190.7	protein_coding	protein_coding	protein_coding	protein_coding	0	662	2	8.21389	8.64588	9.07787	2.18885e-5	9.65082e-7	0.0027064	1.02583e-4
chr3	195112751	195112851	1981138	0	-	0.63	(0.58,1]	chr3	201655	187	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000437101.5:ENST00000473200.1:ENST00000429994.5:ENST00000356740.5:ENST00000418940.5:ENST00000491138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	604	2	8.3320900000000009	8.644135	8.95618	2.91156e-5	1.59132e-8	0.00303934	7.06012e-6
chr16	73055850	73055949	6627969	0	-	0.494949	(0.485,0.523]	chr16	663553	79	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2:ENST00000397992.5	protein_coding	protein_coding	protein_coding	protein_coding	0	656	2	8.24332	8.64287	9.04242	2.3277e-5	9.54563e-7	0.00277911	1.01723e-4
chr16	29271013	29271113	6433547	0	+	0.52	(0.485,0.523]	chr16	636745	189	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	698	2	8.01735	8.64277	9.26819	1.42672e-5	2.01411e-6	0.0021856000000000002	1.67291e-4
chr18	79146248	79146348	7097712	0	+	0.64	(0.58,1]	chr18	722822	20	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000586672.5:ENST00000590271.5:ENST00000490210.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	599	2	8.41863	8.642335	8.86604	2.3594e-5	2.23715e-8	0.00280448	8.84048e-6
chrX	316237	316325	7964858	0	-	0.5	(0.485,0.523]	chrX	834136	6	INTRON	INTRON	GTPBP6	ENSG00000178605.13	ENST00000326153.9	protein_coding	protein_coding	protein_coding	protein_coding	0	627	2	8.32041	8.642155	8.9639	1.09146e-4	8.4308e-8	0.00583571	2.12282e-5
chr16	1740095	1740194	6371340	0	+	0.59596	(0.58,1]	chr16	628851	47	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	597	2	8.46003	8.64054	8.82105	2.1331e-5	2.65082e-8	0.00267833	9.98819e-6
chr10	31391194	31391294	4472474	0	+	0.41	(0.39,0.419]	chr10	427907	11	INTRON	INTRON	ZEB1	ENSG00000148516.23	ENST00000488625.6:ENST00000560196.5:ENST00000542879.5:ENST00000561304.5:ENST00000320985.14:ENST00000560721.6:ENST00000559858.5:ENST00000558440.5:ENST00000437844.6:ENST00000424869.6:ENST00000542815.7:ENST00000558863.5:ENST00000561212.5:ENST00000558655.5:ENST00000561061.5:ENST00000559496.5:ENST00000446923.7:ENST00000557827.5:ENST00000606671.5:ENST00000606161.1:ENST00000493835.5:ENST00000560909.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	643	2	8.45117	8.64038	8.82959	7.81757e-5	1.27175e-6	0.00492443	1.23031e-4
chr6	166930643	166930743	3301783	0	-	0.48	(0.45,0.485]	chr6	319710	2	SS5_PROX	SS5_PROX:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000510083.1:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000467705.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	990	2	7.23468	8.64004	10.0454	3.17326e-5	3.78278e-6	0.00122199	0.00117335
chr10	75884224	75884324	4525011	0	+	0.52	(0.485,0.523]	chr10	432292	3	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	618	2	8.5043	8.638835	8.77337	7.38892e-5	1.61082e-7	0.00480458	3.15304e-5
chr6	138465152	138465252	3273792	0	-	0.5	(0.485,0.523]	chr6	316903	176	INTRON	INTRON	NHSL1	ENSG00000135540.12	ENST00000427025.6:ENST00000343505.10:ENST00000342260.9:ENST00000426841.6:ENST00000491526.6:ENST00000533765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	705	2	7.78585	8.637855	9.48986	3.335e-4	1.38839e-8	0.0104047	6.54983e-6
chr6	158020288	158020388	3059695	0	+	0.48	(0.45,0.485]	chr6	297373	21	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	0	645	2	8.14425	8.63501	9.12577	2.0342e-4	7.23658e-8	0.0080616	1.91999e-5
chr17	37316253	37316353	6892397	0	-	0.47	(0.45,0.485]	chr17	699918	166	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	624	2	8.57162	8.63409	8.69656	6.52457e-5	4.53179e-7	0.00448806	6.22319e-5
chr1	1030025	1030125	1015	0	+	0.53	(0.523,0.58]	chr1	166	72	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	615	2	8.62786	8.631125	8.63439	5.75558e-5	2.34075e-7	0.00421737	4.03613e-5
chr13	113503295	113503395	5658308	0	+	0.42	(0.419,0.45]	chr13	555698	4	SS3_PROX	SS3_PROX:INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000462877.5:ENST00000622371.1	protein_coding	protein_coding	protein_coding	protein_coding	0	656	2	8.30992	8.63061	8.9513	8.09262e-5	2.4537e-6	0.00498922	1.91615e-4
chr15	22558888	22558988	6059863	0	+	0.47	(0.45,0.485]	chr15	594971	14	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	619	2	8.49064	8.629795000000001	8.76895	9.99596e-5	2.36643e-7	0.00559397	4.06373e-5
chr12	46223372	46223472	5419008	0	-	0.4	(0.39,0.419]	chr12	530531	139	INTRON	INTRON	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000612161.4:ENST00000549633.5:ENST00000551506.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	664	2	8.04886	8.629165	9.20947	3.61733e-4	1.16543e-7	0.0108908	2.59103e-5
chr6	349246	349344	2824327	0	+	0.44898	(0.419,0.45]	chr6	277235	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DUSP22	ENSG00000112679.15	ENST00000344450.9:ENST00000603795.5:ENST00000419235.7:ENST00000603726.5:ENST00000604971.5:ENST00000604988.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	1736	2	6.95049	8.628495000000001	10.3065	5.27782e-5	4.75913e-9	0.00403522	3.40118e-6
chr6	158019989	158020089	3059692	0	+	0.54	(0.523,0.58]	chr6	297373	18	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	0	618	2	8.33083	8.627035	8.92324	1.08149e-4	8.73805e-8	0.00581149	2.17411e-5
chr1	27489285	27489385	431244	0	-	0.51	(0.485,0.523]	chr1	50973	600	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	0	619	2	8.511	8.62674	8.74248	4.44142e-5	3.90361e-7	0.0036832	5.64502e-5
chr1	31578803	31578903	81033	0	+	0.42	(0.419,0.45]	chr1	9281	2	SS3_PROX	SS3_PROX:INTRON	LINC01226:TINAGL1	ENSG00000284543.1:ENSG00000142910.16	ENST00000639839.1:ENST00000640226.1:ENST00000457433.6:ENST00000271064.12:ENST00000461030.5:ENST00000478398.5:ENST00000481165.5:ENST00000537531.2:ENST00000468635.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	795	2	7.68436	8.625734999999999	9.56711	2.43642e-5	1.59898e-5	0.00284264	7.18027e-4
chr11	129845336	129845435	4965068	0	+	0.373737	(0.36,0.39]	chr11	479911	167	INTRON	INTRON	TMEM45B	ENSG00000151715.8	ENST00000281441.8:ENST00000527754.1:ENST00000529381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	692	2	8.04723	8.625665000000001	9.2041	3.51769e-5	4.36489e-6	0.00328636	2.85907e-4
chr4	3362897	3362997	2005065	0	+	0.54	(0.523,0.58]	chr4	204663	195	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	632	2	8.15266	8.624565	9.09647	1.57349e-4	4.81991e-8	0.00700666	1.47179e-5
chr2	3221440	3221539	1080315	0	-	0.515152	(0.485,0.523]	chr2	117609	68	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000482570.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	637	2	8.11591	8.62405	9.13219	1.67879e-4	4.74561e-8	0.00724399	1.45439e-5
chr17	77350899	77350998	6803868	0	+	0.59596	(0.58,1]	chr17	686742	267	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	604	2	8.38715	8.62096	8.85477	8.09791e-6	1.34369e-7	0.00172109	2.8138e-5
chr16	87739125	87739225	6656472	0	-	0.56	(0.523,0.58]	chr16	665892	81	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	617	2	8.29802	8.620785	8.94355	1.15904e-4	8.15058e-8	0.00598993	2.08667e-5
chr19	7153427	7153526	7323801	0	-	0.575758	(0.523,0.58]	chr19	756780	1	INTRON	INTRON	INSR	ENSG00000171105.14	ENST00000341500.9:ENST00000302850.10:ENST00000598216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	658	2	8.13839	8.619315	9.10024	2.08549e-5	1.24133e-6	0.00264839	1.20716e-4
chr14	68899079	68899177	5999330	0	-	0.591837	(0.58,1]	chr14	588704	50	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	628	2	8.18183	8.617815	9.0538	4.94796e-6	2.86865e-7	0.00135941	4.58837e-5
chr2	239281976	239282076	1391528	0	-	0.46	(0.45,0.485]	chr2	148740	304	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	634	2	8.15036	8.616675	9.08299	2.00906e-4	8.34606e-8	0.00800644	2.11098e-5
chr16	81615508	81615608	6509451	0	+	0.45	(0.419,0.45]	chr16	645921	46	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	630	2	8.50727	8.615745	8.72422	1.25438e-4	1.34312e-6	0.00620907	1.27514e-4
chr9	131586846	131586943	4418985	0	-	0.546392	(0.523,0.58]	chr9	421909	19	INTRON	INTRON	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000372189.7:ENST00000683357.1:ENST00000372190.7	protein_coding	protein_coding	protein_coding	protein_coding	0	649	2	8.16631	8.612359999999999	9.05841	2.28284e-5	1.13113e-6	0.00276344	1.12814e-4
chr1	31579003	31579103	81035	0	+	0.43	(0.419,0.45]	chr1	9281	4	SS3_PROX	SS3_PROX:INTRON	LINC01226:TINAGL1	ENSG00000284543.1:ENSG00000142910.16	ENST00000639839.1:ENST00000640226.1:ENST00000457433.6:ENST00000271064.12:ENST00000461030.5:ENST00000478398.5:ENST00000481165.5:ENST00000537531.2:ENST00000468635.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	747	2	7.80074	8.61189	9.42304	3.23074e-5	1.13359e-5	0.00317546	5.61766e-4
chr2	11483180	11483280	719692	0	+	0.66	(0.58,1]	chr2	84084	4	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000628795.2	protein_coding	protein_coding	protein_coding	protein_coding	2	1616	2	7.20058	8.611139999999999	10.0217	4.3773e-7	4.35424e-9	7.30832e-4	3.1657e-6
chr2	121339168	121339267	1261069	0	-	0.484848	(0.45,0.485]	chr2	135874	15	UTR3	UTR3:EXON_MRNA	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8	protein_coding	protein_coding	protein_coding	protein_coding	1	1509	2	6.84842	8.61096	10.3735	1.87424e-6	4.48024e-7	0.00100747	6.18848e-5
chr3	105847337	105847437	1862759	0	-	0.39	(0.36,0.39]	chr3	189853	75	INTRON	INTRON	CBLB	ENSG00000114423.23	ENST00000645759.1:ENST00000394030.8:ENST00000646499.1:ENST00000645425.1:ENST00000646825.1:ENST00000643322.1:ENST00000403724.5:ENST00000405772.5:ENST00000447441.6:ENST00000643403.1:ENST00000438603.6:ENST00000443752.2:ENST00000643192.1:ENST00000642907.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	680	2	8.04723	8.607995	9.16876	3.77743e-5	4.36489e-6	0.00341297	2.85907e-4
chr6	170398470	170398569	3076564	0	+	0.424242	(0.419,0.45]	chr6	299192	25	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	3	2333	2	7.21993	8.607795	9.99566	1.04848e-5	3.01248e-8	0.00190754	1.07189e-5
chr16	81679128	81679227	6510102	0	+	0.565657	(0.523,0.58]	chr16	645979	1	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	1	1347	2	7.21501	8.60515	9.99529	2.96057e-6	8.94394e-8	0.00112869	2.20249e-5
chr11	96076395	96076495	5110899	0	-	0.54	(0.523,0.58]	chr11	496560	843	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6:ENST00000618849.1	protein_coding	protein_coding	protein_coding	protein_coding	0	801	2	7.55598	8.603024999999999	9.65007	8.36731e-6	6.30835e-6	0.00152915	4.52433e-4
chr12	132779699	132779799	5540248	0	-	0.6	(0.58,1]	chr12	546769	15	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	583	2	8.56139	8.601655000000001	8.64192	1.36726e-5	7.02349e-8	0.00215732	1.8753e-5
chr17	80224336	80224436	6806862	0	+	0.59	(0.58,1]	chr17	687275	6	INTRON	INTRON	SLC26A11	ENSG00000181045.15	ENST00000361193.8:ENST00000546047.6:ENST00000411502.7:ENST00000571888.5:ENST00000576126.5:ENST00000572725.5:ENST00000571564.5:ENST00000571176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	591	2	8.42372	8.601405	8.77909	9.75922e-6	1.17306e-7	0.001858	2.59103e-5
chr16	29270213	29270313	6433539	0	+	0.49	(0.485,0.523]	chr16	636745	181	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	635	2	8.21026	8.599425	8.98859	2.61488e-5	1.06527e-6	0.00292399	1.08692e-4
chrX	44898985	44899085	7871931	0	+	0.48	(0.45,0.485]	chrX	825082	246	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	606	2	8.43672	8.59832	8.75992	1.1172e-4	2.43803e-7	0.00589673	4.12107e-5
chr9	123884917	123885017	4401443	0	-	0.54	(0.523,0.58]	chr9	419733	55	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	0	639	2	8.1732	8.59762	9.02204	2.46936e-5	1.10543e-6	0.00285089	1.11364e-4
chr13	112873251	112873341	5654405	0	+	0.544444	(0.523,0.58]	chr13	555053	3	SS3_PROX	SS3_PROX:INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000471555.5:ENST00000415301.2:ENST00000419631.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	608	2	8.25308	8.596295000000001	8.93951	1.27418e-4	8.26421e-8	0.00624469	2.10079e-5
chr16	81615012	81615111	6509446	0	+	0.444444	(0.419,0.45]	chr16	645921	41	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	630	2	8.3633	8.594355	8.82541	1.03219e-4	2.0856e-6	0.0056665	1.71281e-4
chr17	78798023	78798122	6979429	0	-	0.535354	(0.523,0.58]	chr17	712642	25	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	USP36	ENSG00000055483.20	ENST00000588130.5:ENST00000587010.5:ENST00000591052.5:ENST00000589225.5:ENST00000587379.1:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	598	2	8.53705	8.59318	8.64931	6.98464e-5	2.22514e-7	0.00468523	3.91312e-5
chr3	13373973	13374073	1692588	0	-	0.47	(0.45,0.485]	chr3	176729	1	SS3_PROX	SS3_PROX:INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000420141.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	602	2	8.42166	8.588525	8.75539	1.15241e-4	2.4748e-7	0.00597643	4.16466e-5
chr22	25459598	25459681	7701138	0	+	0.578313	(0.523,0.58]	chr22	805969	2	EXON_PSEUDO	EXON_PSEUDO:SS5_ADJ:SS5_PROX:INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000382734.10:ENST00000686640.1:ENST00000509460.3:ENST00000415709.6:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	606	2	8.4076	8.586915000000001	8.76623	4.28104e-5	5.04e-7	0.00362093	6.66494e-5
chr9	137780905	137781003	4266118	0	+	0.540816	(0.523,0.58]	chr9	407438	8	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	599	2	8.32542	8.586545000000001	8.84767	1.09393e-4	1.13172e-7	0.00583571	2.55467e-5
chr17	15464863	15464962	6860083	0	-	0.525253	(0.523,0.58]	chr17	695067	114	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	596	2	8.57406	8.586525	8.59899	6.45528e-5	2.6396e-7	0.00446482	4.359e-5
chr12	132951857	132951957	5542050	0	-	0.39	(0.36,0.39]	chr12	547064	32	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	611	2	8.34756	8.58567	8.82378	1.94045e-4	3.89159e-7	0.00785001	5.64502e-5
chr16	2164596	2164691	6372948	0	+	0.621053	(0.58,1]	chr16	629424	2	INTRON	INTRON	TRAF7	ENSG00000131653.13	ENST00000565383.5:ENST00000569686.5:ENST00000326181.11:ENST00000567653.5:ENST00000564067.5:ENST00000567645.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	1201	2	7.8064	8.584679999999999	9.36296	2.2912e-6	2.65815e-9	0.00111233	2.41273e-6
chr1	1030722	1030821	1022	0	+	0.525253	(0.523,0.58]	chr1	166	79	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	594	2	8.49424	8.584029999999998	8.67382	7.65029e-5	2.04724e-7	0.00489022	3.68912e-5
chr12	132951758	132951857	5542049	0	-	0.40404	(0.39,0.419]	chr12	547064	31	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	614	2	8.28153	8.58362	8.88571	2.30218e-4	3.25437e-7	0.00855862	5.0097e-5
chr1	43560220	43560320	107041	0	+	0.56	(0.523,0.58]	chr1	13192	59	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	1303	2	7.3121	8.58296	9.85382	4.03831e-6	6.39695e-8	0.0012457	1.73561e-5
chr4	10103296	10103395	2195683	0	-	0.575758	(0.523,0.58]	chr4	222412	38	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	614	2	8.29831	8.582465	8.86662	3.45121e-5	7.27602e-7	0.00326132	8.49186e-5
chr16	2165756	2165856	6372960	0	+	0.6	(0.58,1]	chr16	629426	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TRAF7	ENSG00000131653.13	ENST00000565383.5:ENST00000569686.5:ENST00000326181.11:ENST00000567653.5:ENST00000564067.5:ENST00000567645.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	573	2	8.35421	8.5784300000000009	8.80265	2.75934e-5	2.84106e-8	0.00296016	1.03502e-5
chr3	129394579	129394673	1911563	0	-	0.56383	(0.523,0.58]	chr3	194158	4	INTRON	INTRON	RPL32P3	ENSG00000251474.7	ENST00000510078.5:ENST00000507287.5:ENST00000687239.1:ENST00000514355.5:ENST00000507238.5:ENST00000515866.5:ENST00000499631.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	1313	2	7.22928	8.57823	9.92718	3.43808e-6	8.51426e-8	0.00120797	2.13105e-5
chr1	23392484	23392583	424240	0	-	0.454545	(0.45,0.485]	chr1	49807	47	INTRON	INTRON	TCEA3	ENSG00000204219.11	ENST00000450454.7:ENST00000476978.2	protein_coding	protein_coding	protein_coding	protein_coding	0	615	2	8.12578	8.576725	9.02767	2.11215e-4	1.00344e-7	0.00821527	2.33173e-5
chr17	15465262	15465362	6860087	0	-	0.48	(0.45,0.485]	chr17	695067	118	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	597	2	8.56107	8.57659	8.59211	8.6417e-5	4.23707e-7	0.00516347	5.94106e-5
chr21	42849027	42849126	7675462	0	-	0.636364	(0.58,1]	chr21	802287	54	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	6	6561	2	8.5549	8.573065	8.59123	1.14002e-7	2.45426e-12	4.23462e-4	3.74712e-8
chr11	61272347	61272435	5041299	0	-	0.397727	(0.39,0.419]	chr11	488756	2	INTRON	INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10:ENST00000535710.1:ENST00000398808.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	609	2	8.4401	8.57188	8.70366	1.00366e-4	1.31631e-6	0.00560072	1.25608e-4
chr21	45474181	45474281	7631008	0	+	0.51	(0.485,0.523]	chr21	797673	2	SS5_PROX	SS5_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	601	2	8.38039	8.57153	8.76267	4.25314e-5	6.0461e-7	0.00362006	7.52596e-5
chr20	62278372	62278470	7506892	0	+	0.459184	(0.45,0.485]	chr20	782713	2	EXON_MRNA	EXON_MRNA:INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3:ENST00000620616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	594	2	8.55607	8.56768	8.57929	8.32191e-5	4.76907e-7	0.00506058	6.42299e-5
chr9	133854190	133854289	4428940	0	-	0.494949	(0.485,0.523]	chr9	423304	195	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	0	592	2	8.47805	8.566255	8.65446	5.36298e-5	4.36004e-7	0.00405853	6.06168e-5
chr8	128041462	128041560	3920296	0	+	0.459184	(0.45,0.485]	chr8	374321	12	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	0	605	2	8.16852	8.56541	8.9623	1.93607e-4	1.24708e-7	0.00784372	2.6886e-5
chr5	882252	882350	2608198	0	-	0.530612	(0.523,0.58]	chr5	259472	12	EXON_MRNA	EXON_MRNA:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	590	2	8.30904	8.56531	8.82158	0.00011323999999999999	1.23728e-7	0.00593833	2.67779e-5
chr20	64021764	64021863	7510619	0	+	0.585859	(0.58,1]	chr20	783726	46	INTRON	INTRON	PRPF6	ENSG00000101161.8	ENST00000266079.5	protein_coding	protein_coding	protein_coding	protein_coding	1	1397	2	7.10674	8.56432	10.0219	4.42135e-6	2.68704e-10	0.00129297	5.72821e-7
chr4	73417769	73417841	2056983	0	+	0.5	(0.485,0.523]	chr4	210272	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ALB	ENSG00000163631.17	ENST00000621628.4:ENST00000295897.9:ENST00000415165.6:ENST00000621085.4:ENST00000503124.5:ENST00000476441.6:ENST00000509063.5:ENST00000401494.7:ENST00000505649.5:ENST00000511370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	588	2	8.55379	8.564145	8.5745	6.36217e-5	3.38071e-7	0.00444014	5.11972e-5
chr2	149618332	149618432	920129	0	+	0.42	(0.419,0.45]	chr2	102788	239	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	0	644	2	7.9404	8.56246	9.18452	5.54971e-4	1.64788e-7	0.0137234	3.21061e-5
chr21	45453323	45453423	7630796	0	+	0.45	(0.419,0.45]	chr21	797656	475	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	605	2	8.32236	8.56208	8.8018	2.70398e-4	5.4212e-7	0.00934214	6.98748e-5
chr1	17588879	17588979	54068	0	+	0.53	(0.523,0.58]	chr1	5464	4	SS5_PROX	SS5_PROX:INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5	protein_coding	protein_coding	protein_coding	protein_coding	0	585	2	8.44013	8.561824999999999	8.68352	8.58147e-5	1.98087e-7	0.00513437	3.62396e-5
chr1	8701256	8701356	394567	0	-	0.58	(0.523,0.58]	chr1	45065	445	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000468247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	601	2	8.31711	8.56139	8.80567	3.93382e-5	6.83148e-7	0.00349684	8.15044e-5
chr16	1735366	1735466	6371292	0	+	0.61	(0.58,1]	chr16	628850	4	PRIMIRNA	PRIMIRNA:INTRON	MAPK8IP3:MIR3177	ENSG00000138834.15:ENSG00000265820.1	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1:ENST00000578255.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:processed_transcript:primary_miRNA	0	567	2	8.30394	8.560205	8.81647	3.11715e-5	2.69694e-8	0.00310936	1.00653e-5
chr16	2165556	2165656	6372958	0	+	0.62	(0.58,1]	chr16	629425	3	SS3_PROX	SS3_PROX:INTRON	TRAF7	ENSG00000131653.13	ENST00000565383.5:ENST00000569686.5:ENST00000326181.11:ENST00000567653.5:ENST00000564067.5:ENST00000567645.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	1405	2	6.95778	8.55989	10.162	6.41187e-6	1.5627e-10	0.00153246	4.95188e-7
chr7	222945	223045	3305884	0	+	0.57	(0.523,0.58]	chr7	320161	136	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	588	2	8.29802	8.5598	8.82158	1.15904e-4	1.23728e-7	0.00598993	2.67779e-5
chr2	54562685	54562785	799341	0	+	0.46	(0.45,0.485]	chr2	90800	34	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7:ENST00000333896.5	protein_coding	protein_coding	protein_coding	protein_coding	0	589	2	8.49064	8.558955000000001	8.62727	9.99596e-5	3.77473e-7	0.00559397	5.51827e-5
chr21	45453223	45453323	7630795	0	+	0.43	(0.419,0.45]	chr21	797656	474	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	604	2	8.29004	8.556585	8.82313	2.8749e-4	5.07482e-7	0.00964028	6.70044e-5
chr21	45134414	45134514	7629265	0	+	0.66	(0.58,1]	chr21	797547	3	SS3_PROX	SS3_PROX:INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5:ENST00000449478.1:ENST00000464215.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	562	2	8.42387	8.555465000000002	8.68706	2.3295e-5	4.38745e-8	0.00277911	1.38506e-5
chr20	23388256	23388355	7537106	0	-	0.414141	(0.39,0.419]	chr20	786591	66	INTRON	INTRON	NAPB	ENSG00000125814.17	ENST00000398425.7:ENST00000432543.6:ENST00000617876.4:ENST00000377026.4:ENST00000472855.5:ENST00000468128.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	621	2	8.2184	8.555335	8.89227	6.90102e-5	2.61595e-6	0.00464662	1.99489e-4
chr1	3470471	3470565	5813	0	+	0.595745	(0.58,1]	chr1	1229	5	INTRON	INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5	protein_coding	protein_coding	protein_coding	protein_coding	0	624	2	7.9756	8.552565000000001	9.12953	4.09964e-6	6.10012e-7	0.00125593	7.54968e-5
chr4	56437025	56437123	2046037	0	+	0.530612	(0.523,0.58]	chr4	209256	3	INTRON	INTRON	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000505164.5:ENST00000504188.1:ENST00000399688.7:ENST00000510584.1:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	586	2	8.43655	8.5496	8.66265	5.34354e-5	4.57172e-7	0.00405763	6.24644e-5
chr1	31578703	31578803	81032	0	+	0.42	(0.419,0.45]	chr1	9281	1	SS3_PROX	SS3_PROX:INTRON	LINC01226:TINAGL1	ENSG00000284543.1:ENSG00000142910.16	ENST00000639839.1:ENST00000640226.1:ENST00000457433.6:ENST00000271064.12:ENST00000461030.5:ENST00000478398.5:ENST00000481165.5:ENST00000537531.2:ENST00000468635.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	804	2	7.46314	8.549150000000001	9.63516	3.05349e-5	2.13188e-5	0.00267833	0.00114367
chr4	886968	887066	2178472	0	-	0.581633	(0.58,1]	chr4	220626	13	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	1381	2	7.1799	8.54832	9.91674	3.68202e-6	4.03361e-10	0.00122024	6.99714e-7
chr14	103105372	103105472	5921872	0	+	0.52	(0.485,0.523]	chr14	579220	3	SS5_PROX	SS5_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	1259	2	7.61319	8.54808	9.48297	8.93649e-6	2.46888e-8	0.00180651	9.49156e-6
chr17	17821120	17821220	6865732	0	-	0.51	(0.485,0.523]	chr17	695915	2	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	1561	2	7.41833	8.5458	9.67327	7.89711e-6	7.36707e-9	0.00170463	4.3413e-6
chr7	74496007	74496107	3391787	0	+	0.47	(0.45,0.485]	chr7	327343	415	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	0	585	2	8.53506	8.545770000000001	8.55648	8.72417e-5	5.10909e-7	0.00518923	6.72975e-5
chr1	43559722	43559821	107036	0	+	0.515152	(0.485,0.523]	chr1	13192	54	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	1261	2	7.37659	8.54534	9.71409	5.39081e-6	5.5799e-8	0.00140527	1.58298e-5
chr3	141549373	141549472	1589083	0	+	0.464646	(0.45,0.485]	chr3	167818	84	INTRON	INTRON	RASA2	ENSG00000155903.14	ENST00000286364.9	protein_coding	protein_coding	protein_coding	protein_coding	0	588	2	8.44784	8.54456	8.64128	7.31827e-5	6.79656e-7	0.00478657	8.13055e-5
chr16	81615608	81615707	6509452	0	+	0.454545	(0.45,0.485]	chr16	645921	47	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	593	2	8.36695	8.544165	8.72138	6.19644e-5	8.8487e-7	0.00437718	9.69154e-5
chr4	3368382	3368481	2005120	0	+	0.616162	(0.58,1]	chr4	204663	250	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	561	2	8.28102	8.544145	8.80727	3.29506e-5	2.79204e-8	0.00320976	1.02606e-5
chr19	7639981	7640068	7199314	0	+	0.45977	(0.45,0.485]	chr19	733969	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	STXBP2	ENSG00000076944.17	ENST00000593535.5:ENST00000595950.5:ENST00000221283.10:ENST00000441779.6:ENST00000595181.5:ENST00000597068.5:ENST00000414284.6:ENST00000599737.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	583	2	8.40644	8.543645	8.68085	1.1891e-4	3.16452e-7	0.00606093	4.91645e-5
chr13	113050219	113050318	5656137	0	+	0.515152	(0.485,0.523]	chr13	555180	30	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	606	2	8.19006	8.543320000000001	8.89658	3.18891e-5	1.13906e-6	0.00315872	1.13397e-4
chr16	53760167	53760267	6458096	0	+	0.47	(0.45,0.485]	chr16	640509	484	INTRON	INTRON	FTO	ENSG00000140718.21	ENST00000636491.1:ENST00000636218.1:ENST00000637001.1:ENST00000471389.6:ENST00000636992.1:ENST00000570395.1:ENST00000637969.1:ENST00000637845.1:ENST00000637562.1:ENST00000636030.1:ENST00000464071.1:ENST00000640179.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	612	2	8.17662	8.543054999999999	8.90949	4.18546e-5	1.64042e-6	0.00359466	1.45691e-4
chr6	47269177	47269277	3144098	0	-	0.45	(0.419,0.45]	chr6	306750	153	INTRON	INTRON	TNFRSF21	ENSG00000146072.6	ENST00000296861.2	protein_coding	protein_coding	protein_coding	protein_coding	0	645	2	7.86195	8.54274	9.22353	6.42272e-4	1.45855e-7	0.0148938	2.96757e-5
chr2	233165822	233165922	1058284	0	+	0.56	(0.523,0.58]	chr2	115120	10	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493078.1:ENST00000472517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	592	2	8.31087	8.542539999999999	8.77421	4.20848e-5	6.97596e-7	0.00361086	8.26807e-5
chr16	2164881	2164976	6372951	0	+	0.621053	(0.58,1]	chr16	629424	5	INTRON	INTRON	TRAF7	ENSG00000131653.13	ENST00000565383.5:ENST00000569686.5:ENST00000326181.11:ENST00000567653.5:ENST00000564067.5:ENST00000567645.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	1171	2	7.82131	8.53981	9.25831	2.97507e-6	2.50998e-9	0.00112869	2.31616e-6
chr16	1739701	1739800	6371336	0	+	0.59596	(0.58,1]	chr16	628851	43	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	562	2	8.21605	8.538825	8.8616	3.85543e-5	2.27492e-8	0.00344738	8.96862e-6
chr8	8349910	8350010	3934105	0	-	0.39	(0.36,0.39]	chr8	376133	99	INTRON	INTRON	PRAG1	ENSG00000275342.5	ENST00000615670.5:ENST00000622241.1	protein_coding	protein_coding	protein_coding	protein_coding	1	1853	2	7.84327	8.537975	9.23268	6.49785e-6	1.06294e-7	0.00153653	2.4321e-5
chr8	38769793	38769893	3802253	0	+	0.49	(0.485,0.523]	chr8	365828	120	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	1252	2	7.39178	8.537215	9.68265	5.77517e-6	5.29588e-8	0.00146263	1.56042e-5
chr16	1738815	1738913	6371327	0	+	0.571429	(0.523,0.58]	chr16	628851	34	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	577	2	8.30354	8.535734999999999	8.76793	1.14562e-4	1.48593e-7	0.00596205	2.99526e-5
chr20	32377944	32378044	7455885	0	+	0.51	(0.485,0.523]	chr20	776143	55	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	597	2	8.23018	8.535440000000001	8.8407	3.59654e-5	9.97111e-7	0.00330882	1.04991e-4
chr21	43974668	43974767	7625538	0	+	0.454545	(0.45,0.485]	chr21	796959	28	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000398063.6:ENST00000398058.5:ENST00000546158.1:ENST00000479117.5:ENST00000467358.5:ENST00000484865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	584	2	8.25037	8.53398	8.81759	1.63802e-4	2.01487e-7	0.00716963	3.6561e-5
chr16	1738618	1738716	6371325	0	+	0.571429	(0.523,0.58]	chr16	628851	32	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	588	2	8.11548	8.533535	8.95159	1.70094e-4	7.92888e-8	0.00729818	2.04865e-5
chr22	21447726	21447824	7689839	0	+	0.510204	(0.485,0.523]	chr22	804733	11	UTR3	UTR3:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	0	590	2	8.26923	8.529845	8.79046	4.00672e-5	8.75797e-7	0.00351956	9.63871e-5
chr6	1737879	1737979	3080250	0	-	0.46	(0.45,0.485]	chr6	299476	110	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	577	2	8.42166	8.529409999999999	8.63716	1.15241e-4	3.65393e-7	0.00597643	5.40196e-5
chr11	70776958	70777057	5062051	0	-	0.515152	(0.485,0.523]	chr11	492701	591	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	600	2	8.17643	8.529160000000001	8.88189	3.29143e-5	1.19167e-6	0.00320976	1.17e-4
chr1	15860404	15860504	48980	0	+	0.49	(0.485,0.523]	chr1	4903	119	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	572	2	8.42545	8.528105	8.63076	8.73719e-5	2.60872e-7	0.00518923	4.31649e-5
chr16	16155403	16155496	6556405	0	-	0.505376	(0.485,0.523]	chr16	653054	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6:ENST00000576204.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	574	2	8.48911	8.52722	8.56533	6.48779e-5	4.20114e-7	0.00447658	5.90925e-5
chr13	26257868	26257968	5551225	0	+	0.44	(0.419,0.45]	chr13	547916	27	INTRON	INTRON	CDK8	ENSG00000132964.12	ENST00000536792.5:ENST00000381527.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	592	2	8.40915	8.5252	8.64125	1.47118e-4	1.81336e-6	0.00676395	1.55823e-4
chr1	31578488	31578588	81029	0	+	0.43	(0.419,0.45]	chr1	9279	3	SS5_PROX	SS5_PROX:INTRON	LINC01226:TINAGL1	ENSG00000284543.1:ENSG00000142910.16	ENST00000639839.1:ENST00000640226.1:ENST00000457433.6:ENST00000271064.12:ENST00000461030.5:ENST00000478398.5:ENST00000481165.5:ENST00000537531.2:ENST00000468635.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	774	2	7.48471	8.524785	9.56486	2.86803e-5	2.44719e-5	0.00284264	0.00108927
chr2	161217537	161217636	938682	0	+	0.434343	(0.419,0.45]	chr2	103669	7	INTRON	INTRON	TANK	ENSG00000136560.14	ENST00000259075.6:ENST00000432002.5:ENST00000429217.5:ENST00000406287.5:ENST00000402568.5:ENST00000457887.5:ENST00000392749.7:ENST00000432692.6:ENST00000405852.5:ENST00000456358.5:ENST00000468831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	595	2	8.35161	8.523665000000001	8.69572	1.32505e-4	2.16126e-6	0.00637826	1.7578e-4
chr13	97346403	97346503	5632049	0	+	0.36	(0.33,0.36]	chr13	553195	2	SS3_PROX	SS3_PROX:INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	1295	2	7.7141	8.52141	9.32872	1.88431e-5	3.5165e-8	0.00249974	1.18591e-5
chr15	28216599	28216698	6207137	0	-	0.464646	(0.45,0.485]	chr15	611111	4	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	0	573	2	8.47614	8.518705	8.56127	1.02998e-4	4.68836e-7	0.0056665	6.3683e-5
chr20	44404670	44404768	7482962	0	+	0.469388	(0.45,0.485]	chr20	779645	14	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	1532	2	6.82603	8.517915	10.2098	3.67051e-5	1.87119e-9	0.00334579	1.93894e-6
chr2	239269086	239269186	1391399	0	-	0.41	(0.39,0.419]	chr2	148740	175	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	585	2	8.24244	8.517755000000001	8.79307	2.48455e-4	4.35861e-7	0.00891679	6.06168e-5
chr10	127260824	127260924	4610535	0	+	0.55	(0.523,0.58]	chr10	440799	30	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2:ENST00000484400.5:ENST00000464466.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	599	2	7.94228	8.51756	9.09284	2.44062e-4	4.88055e-8	0.00884339	1.48222e-5
chr10	75709358	75709457	4523257	0	+	0.50505	(0.485,0.523]	chr10	432271	614	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	1230	2	7.53095	8.51663	9.50231	8.56708e-6	3.27931e-8	0.00176791	1.1359e-5
chr12	112226219	112226297	5503301	0	-	0.448718	(0.419,0.45]	chr12	541895	2	SS5_PROX	SS5_PROX:INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550968.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	639	2	7.9709	8.515805	9.06071	6.54597e-5	6.82696e-6	0.00449931	3.94278e-4
chr8	141000080	141000179	4093132	0	-	0.474747	(0.45,0.485]	chr8	388934	156	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	594	2	8.2035	8.515775	8.82805	4.96164e-5	1.50396e-6	0.00388341	1.372e-4
chr10	127260725	127260824	4610534	0	+	0.555556	(0.523,0.58]	chr10	440799	29	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2:ENST00000484400.5:ENST00000464466.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	586	2	8.03811	8.51463	8.99115	1.99936e-4	6.9226e-8	0.00798199	1.85426e-5
chr17	72553932	72554032	6963850	0	-	0.54	(0.523,0.58]	chr17	710389	195	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	3	2570	2	5.84651	8.514555000000001	11.1826	5.65345e-5	3.23847e-11	0.00418116	2.17555e-7
chr12	53184090	53184190	5235161	0	+	0.56	(0.523,0.58]	chr12	508650	15	INTRON	INTRON	ZNF740	ENSG00000139651.11	ENST00000552593.1:ENST00000416904.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	571	2	8.41344	8.514019999999999	8.6146	5.9208e-5	4.94192e-7	0.00427737	6.59235e-5
chr15	99602708	99602808	6198708	0	+	0.57	(0.523,0.58]	chr15	609964	2	INTRON	INTRON	MEF2A	ENSG00000068305.18	ENST00000560493.5:ENST00000354410.9:ENST00000558812.5:ENST00000558856.5:ENST00000685785.1:ENST00000559036.5:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000558049.5:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1:ENST00000559903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	598	2	8.11709	8.51208	8.90707	3.16364e-5	1.33245e-6	0.00314447	1.26716e-4
chr1	1030125	1030224	1016	0	+	0.545455	(0.523,0.58]	chr1	166	73	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	565	2	8.41994	8.51202	8.6041	8.95674e-5	2.59423e-7	0.00524798	4.29675e-5
chr12	49375081	49375181	5225244	0	+	0.38	(0.36,0.39]	chr12	507159	34	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549538.5:ENST00000549412.5:ENST00000550643.5:ENST00000548654.5:ENST00000548710.5:ENST00000549179.5:ENST00000548377.5:ENST00000549298.5:ENST00000552918.6:ENST00000549375.5:ENST00000553127.5:ENST00000321898.10:ENST00000551540.5:ENST00000548777.5:ENST00000552171.1:ENST00000547865.5:ENST00000548388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	587	2	8.31905	8.509985	8.70092	9.64296e-5	1.88866e-6	0.00548947	1.60117e-4
chr3	171700226	171700326	1957440	0	-	0.43	(0.419,0.45]	chr3	199005	4	SS3_PROX	SS3_PROX:INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9:ENST00000481505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	590	2	8.32195	8.508835	8.69572	1.32505e-4	2.36549e-6	0.00637826	1.8704e-4
chr10	63284838	63284938	4698267	0	-	0.49	(0.485,0.523]	chr10	447731	157	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	569	2	8.21886	8.507345	8.79583	1.35227e-4	1.49276e-7	0.00645702	2.99526e-5
chr10	75728347	75728447	4523447	0	+	0.42	(0.419,0.45]	chr10	432271	804	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	579	2	8.37979	8.50657	8.63335	2.42447e-4	9.11843e-7	0.00880395	9.84472e-5
chr12	132951459	132951558	5542046	0	-	0.434343	(0.419,0.45]	chr12	547064	28	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	590	2	8.12273	8.504005	8.88528	3.94333e-4	4.18555e-7	0.0113656	5.8972e-5
chr19	47230230	47230329	7392384	0	-	0.606061	(0.58,1]	chr19	768106	14	INTRON	INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	0	542	2	8.38678	8.503565	8.62035	2.54944e-5	5.63372e-8	0.0028879	1.59286e-5
chr2	149618432	149618532	920130	0	+	0.43	(0.419,0.45]	chr2	102788	240	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	1	1350	2	7.83057	8.502415	9.17426	5.24955e-5	4.17899e-8	0.0040205	1.33177e-5
chr18	79145751	79145851	7097707	0	+	0.64	(0.58,1]	chr18	722822	15	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000586672.5:ENST00000590271.5:ENST00000490210.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	542	2	8.3320900000000009	8.50201	8.67193	2.91156e-5	4.64354e-8	0.00303934	1.43886e-5
chr19	1171035	1171134	7305763	0	-	0.525253	(0.523,0.58]	chr19	753058	20	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	565	2	8.42504	8.50183	8.57862	6.39285e-5	4.75252e-7	0.00445242	6.41524e-5
chr18	79145851	79145950	7097708	0	+	0.646465	(0.58,1]	chr18	722822	16	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000586672.5:ENST00000590271.5:ENST00000490210.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	541	2	8.35969	8.500445	8.6412	2.72287e-5	5.21044e-8	0.00294944	1.54848e-5
chr13	20497993	20498093	5662820	0	-	0.43	(0.419,0.45]	chr13	556208	81	INTRON	INTRON	CRYL1	ENSG00000165475.15	ENST00000643035.1:ENST00000644593.1:ENST00000298248.12:ENST00000644872.1:ENST00000382812.5:ENST00000643750.1:ENST00000644153.1:ENST00000643887.1:ENST00000644167.1:ENST00000646414.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	576	2	8.44484	8.49939	8.55394	2.14201e-4	1.16398e-6	0.0082811	1.15331e-4
chr20	44405064	44405162	7482966	0	+	0.602041	(0.58,1]	chr20	779645	18	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	3682	2	8.43665	8.497345	8.55804	1.13095e-7	3.61295e-11	4.23462e-4	2.24734e-7
chr2	38325707	38325806	1123817	0	-	0.494949	(0.485,0.523]	chr2	123019	63	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	564	2	8.41561	8.497335	8.57906	6.30055e-5	5.37429e-7	0.00441921	6.9537e-5
chrX	123864820	123864919	7946328	0	+	0.474747	(0.45,0.485]	chrX	831426	39	INTRON	INTRON	XIAP	ENSG00000101966.13	ENST00000422098.5:ENST00000481776.5:ENST00000434753.7:ENST00000497906.5:ENST00000468691.5:ENST00000430625.1:ENST00000371199.8:ENST00000497640.1:ENST00000355640.3:ENST00000468503.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	569	2	8.38467	8.495425000000001	8.60618	7.87086e-5	8.35236e-7	0.00494046	9.32677e-5
chr12	120983963	120984062	5340970	0	+	0.50505	(0.485,0.523]	chr12	521546	45	INTRON	INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000400024.6:ENST00000560968.5:ENST00000402929.5:ENST00000535955.5:ENST00000538626.2:ENST00000538646.5:ENST00000541924.5:ENST00000544574.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	560	2	8.31496	8.495	8.67504	1.10413e-4	2.24655e-7	0.00586598	3.93841e-5
chr13	113613547	113613646	5659136	0	+	0.50505	(0.485,0.523]	chr13	555781	21	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	581	2	7.99825	8.49483	8.99141	2.14694e-4	7.6764e-8	0.00828194	2.00813e-5
chr4	3368681	3368781	2005123	0	+	0.64	(0.58,1]	chr4	204663	253	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	540	2	8.48845	8.49436	8.50027	1.93365e-5	9.2198e-8	0.00252758	2.22156e-5
chr13	97339225	97339325	5631976	0	+	0.43	(0.419,0.45]	chr13	553188	44	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	1287	2	7.45227	8.490325	9.52838	2.6286e-5	1.37993e-7	0.00292399	2.85764e-5
chr9	131586651	131586748	4418983	0	-	0.556701	(0.523,0.58]	chr9	421909	17	INTRON	INTRON	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000372189.7:ENST00000683357.1:ENST00000372190.7	protein_coding	protein_coding	protein_coding	protein_coding	0	593	2	8.06614	8.49022	8.9143	3.11476e-5	1.57808e-6	0.00310936	1.41652e-4
chr5	1465004	1465100	2609373	0	-	0.520833	(0.485,0.523]	chr5	259790	8	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000503252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	776	2	7.33651	8.486979999999999	9.63745	1.80479e-5	6.37588e-6	0.00153039	7.82415e-4
chr10	46806708	46806807	4484750	0	+	0.464646	(0.45,0.485]	chr10	428921	44	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000688259.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	561	2	8.48099	8.486550000000001	8.49211	1.01972e-4	5.88072e-7	0.00563933	7.37598e-5
chr2	239281877	239281976	1391527	0	-	0.414141	(0.39,0.419]	chr2	148740	303	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	589	2	7.98938	8.482985	8.97659	4.05719e-4	2.44154e-7	0.0115298	4.12107e-5
chr11	57500578	57500678	5038779	0	-	0.53	(0.523,0.58]	chr11	488208	4	SS5_PROX	SS5_PROX:INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	553	2	8.36819	8.481024999999999	8.59386	9.99377e-5	2.68592e-7	0.00559397	4.40947e-5
chr1	17675883	17675983	54970	0	+	0.53	(0.523,0.58]	chr1	5603	109	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	559	2	8.34791	8.479030000000002	8.61015	5.97725e-5	6.16049e-7	0.0042938	7.61317e-5
chr16	1740194	1740294	6371341	0	+	0.59	(0.58,1]	chr16	628852	1	SS3_PROX	SS3_PROX:INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	541	2	8.116	8.477605	8.83921	4.90617e-5	2.47538e-8	0.00385353	9.49156e-6
chr7	138508604	138508704	3502487	0	+	0.43	(0.419,0.45]	chr7	337502	38	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	1559	2	7.04132	8.476605	9.91189	4.41738e-5	1.66732e-8	0.00367351	7.23564e-6
chr16	81679426	81679526	6510105	0	+	0.51	(0.485,0.523]	chr16	645979	4	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	1	1221	2	7.16001	8.476385	9.79276	4.53672e-6	1.17274e-7	0.00130045	2.59103e-5
chr1	1030821	1030921	1023	0	+	0.54	(0.523,0.58]	chr1	166	80	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	551	2	8.40461	8.475729999999999	8.54685	9.25242e-5	3.14964e-7	0.00534565	4.90696e-5
chr22	28466770	28466870	7779698	0	-	0.39	(0.36,0.39]	chr22	815741	238	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	0	563	2	8.33699	8.475105	8.61322	1.98122e-4	7.54718e-7	0.00794162	8.72346e-5
chr1	3471038	3471133	5819	0	+	0.631579	(0.58,1]	chr1	1229	11	INTRON	INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5	protein_coding	protein_coding	protein_coding	protein_coding	0	608	2	7.81049	8.474805	9.13912	4.00305e-6	1.10937e-6	0.00123911	1.11442e-4
chr6	1737580	1737679	3080247	0	-	0.424242	(0.419,0.45]	chr6	299476	107	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	566	2	8.42017	8.474185	8.5282	2.24513e-4	1.25965e-6	0.00846653	1.22073e-4
chr12	113836986	113837085	5509238	0	-	0.454545	(0.45,0.485]	chr12	542458	133	INTRON	INTRON	RBM19	ENSG00000122965.11	ENST00000545145.6:ENST00000392561.7:ENST00000261741.10:ENST00000552384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	557	2	8.26732	8.474084999999999	8.68085	1.58217e-4	3.16452e-7	0.00703828	4.91645e-5
chr3	143990229	143990326	1593707	0	+	0.319588	(0.29,0.33]	chr3	168488	5	UTR3	UTR3:EXON_MRNA:INTRON	DIPK2A	ENSG00000181744.9	ENST00000315691.8:ENST00000493396.1:ENST00000495414.5:ENST00000441925.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	554	2	8.39851	8.473815	8.54912	5.41106e-5	6.52575e-7	0.0040742	7.93487e-5
chr19	7640403	7640500	7199320	0	+	0.484536	(0.45,0.485]	chr19	733972	2	SS3_PROX	SS3_PROX:INTRON	STXBP2	ENSG00000076944.17	ENST00000593535.5:ENST00000595950.5:ENST00000221283.10:ENST00000441779.6:ENST00000597068.5:ENST00000414284.6:ENST00000599737.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	555	2	8.3278199999999991	8.472565	8.61731	1.39763e-4	3.90036e-7	0.00657845	5.64502e-5
chr20	34565654	34565754	7547084	0	-	0.56	(0.523,0.58]	chr20	787854	43	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	0	562	2	8.25347	8.47083	8.68819	5.05955e-5	8.45494e-7	0.00393085	9.40599e-5
chr1	23392385	23392484	424239	0	-	0.444444	(0.419,0.45]	chr1	49807	46	INTRON	INTRON	TCEA3	ENSG00000204219.11	ENST00000450454.7:ENST00000476978.2	protein_coding	protein_coding	protein_coding	protein_coding	1	1574	2	6.66703	8.469915	10.2728	9.17921e-5	5.29828e-9	0.00531369	3.64682e-6
chr2	101803233	101803333	861691	0	+	0.46	(0.45,0.485]	chr2	97540	32	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5:ENST00000627726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	554	2	8.43672	8.469845	8.50297	1.1172e-4	5.6754e-7	0.00589673	7.21012e-5
chr17	77486523	77486623	6805247	0	+	0.47	(0.45,0.485]	chr17	686821	25	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	554	2	8.44668	8.469395	8.49211	1.09451e-4	5.88072e-7	0.00583571	7.37598e-5
chr21	45500637	45500736	7631311	0	+	0.565657	(0.523,0.58]	chr21	797812	26	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	0	566	2	8.20046	8.469215	8.73797	4.54829e-5	1.00936e-6	0.00373545	1.05357e-4
chr10	132596822	132596922	4617429	0	+	0.54	(0.523,0.58]	chr10	441139	583	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	548	2	8.45012	8.465900000000001	8.48168	8.40154e-5	3.92592e-7	0.00507439	5.6671e-5
chr11	57500192	57500278	5038775	0	-	0.488372	(0.485,0.523]	chr11	488207	7	INTRON	INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	1219	2	7.7803	8.465430000000001	9.15056	1.8418e-5	1.38497e-8	0.00246536	6.54983e-6
chr12	30734867	30734954	5403863	0	-	0.402299	(0.39,0.419]	chr12	529295	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CAPRIN2	ENSG00000110888.19	ENST00000537553.5:ENST00000695402.1:ENST00000298892.9:ENST00000454014.6:ENST00000687797.1:ENST00000695326.1:ENST00000548676.5:ENST00000433722.6:ENST00000395805.6:ENST00000690126.1:ENST00000684863.1:ENST00000695370.1:ENST00000695369.1:ENST00000542550.6:ENST00000695327.1:ENST00000686317.1:ENST00000695371.1:ENST00000695328.1:ENST00000695400.1:ENST00000695329.1:ENST00000540436.6:ENST00000695398.1:ENST00000694880.1:ENST00000688163.1:ENST00000692932.1:ENST00000540584.2:ENST00000695330.1:ENST00000690233.1:ENST00000695372.1:ENST00000695373.1:ENST00000695374.1:ENST00000417045.5:ENST00000537108.5:ENST00000689016.1:ENST00000538387.1:ENST00000690097.1:ENST00000534897.5:ENST00000541765.5:ENST00000543380.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	581	2	8.14533	8.464485	8.78364	8.56465e-5	3.27572e-6	0.00513437	2.34005e-4
chr13	112818105	112818205	5653828	0	+	0.65	(0.58,1]	chr13	554938	15	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000459908.5:ENST00000418678.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	531	2	8.19168	8.464015	8.73635	4.08893e-5	3.64599e-8	0.00354247	1.21978e-5
chr7	47352132	47352232	3587312	0	-	0.45	(0.419,0.45]	chr7	346030	54	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	1541	2	6.99751	8.461635000000001	9.92576	4.81349e-5	1.59562e-8	0.00382113	7.06012e-6
chr7	47352033	47352132	3587311	0	-	0.484848	(0.45,0.485]	chr7	346030	53	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	1463	2	6.85831	8.460855	10.0634	3.42885e-5	3.07627e-9	0.00325532	2.56741e-6
chr16	1738913	1739012	6371328	0	+	0.565657	(0.523,0.58]	chr16	628851	35	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	548	2	8.21257	8.460014999999999	8.70746	1.38752e-4	1.82587e-7	0.00653779	3.43389e-5
chr10	127260924	127261024	4610536	0	+	0.55	(0.523,0.58]	chr10	440799	31	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2:ENST00000484400.5:ENST00000464466.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	606	2	7.68747	8.459445	9.23142	4.12746e-4	3.02662e-8	0.0116511	1.07465e-5
chr16	81626092	81626192	6509558	0	+	0.63	(0.58,1]	chr16	645926	40	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	546	2	8.16032	8.45941	8.7585	1.02668e-5	3.10465e-7	0.00188327	4.85487e-5
chr11	64146853	64146953	5049046	0	-	0.53	(0.523,0.58]	chr11	490257	201	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	556	2	8.07086	8.459265	8.84767	1.86729e-4	1.13172e-7	0.00769604	2.55467e-5
chr16	1738716	1738815	6371326	0	+	0.59596	(0.58,1]	chr16	628851	33	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	530	2	8.16689	8.458855	8.75082	4.34068e-5	3.45301e-8	0.00364716	1.17155e-5
chr18	79145354	79145453	7097703	0	+	0.626263	(0.58,1]	chr18	722822	11	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000586672.5:ENST00000590271.5:ENST00000490210.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	526	2	8.24595	8.456405	8.66686	3.58683e-5	4.73279e-8	0.00330375	1.45439e-5
chr7	139704343	139704443	3723189	0	-	0.53	(0.523,0.58]	chr7	357498	723	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	550	2	8.32951	8.45634	8.58317	6.33121e-5	6.5531e-7	0.00443374	7.93487e-5
chr14	68898684	68898783	5999326	0	-	0.606061	(0.58,1]	chr14	588704	46	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	531	2	8.32405	8.455485	8.58692	1.56454e-5	1.69759e-7	0.00227158	3.2675900000000003e-05
chr20	63731021	63731121	7509349	0	+	0.49	(0.485,0.523]	chr20	783515	215	INTRON	INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	582	2	7.82477	8.45516	9.08555	3.07754e-4	5.56622e-8	0.00996934	1.58177e-5
chr8	47882497	47882597	3973155	0	-	0.51	(0.485,0.523]	chr8	380026	4	SS3_PROX	SS3_PROX:INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	0	563	2	7.97767	8.454744999999999	8.93182	2.241e-4	9.40431e-8	0.00845454	2.24672e-5
chr17	48845258	48845349	6749509	0	+	0.472527	(0.45,0.485]	chr17	680146	9	INTRON	INTRON	CALCOCO2	ENSG00000136436.15	ENST00000503463.5:ENST00000509507.5:ENST00000448105.6:ENST00000258947.8:ENST00000508679.5:ENST00000416445.6:ENST00000513119.5:ENST00000509415.5:ENST00000570513.5:ENST00000575560.5:ENST00000576582.5:ENST00000505071.5:ENST00000507076.1:ENST00000502761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	555	2	8.30004	8.453109999999999	8.60618	7.87086e-5	1.09994e-6	0.00494046	1.11149e-4
chr16	87739025	87739125	6656471	0	-	0.55	(0.523,0.58]	chr16	665892	80	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	542	2	8.33623	8.45208	8.56793	1.06923e-4	2.93262e-7	0.00577346	4.65962e-5
chr5	73802861	73802961	2453467	0	+	0.46	(0.45,0.485]	chr5	244963	71	INTRON	INTRON	ARHGEF28	ENSG00000214944.10	ENST00000545377.5:ENST00000296794.10:ENST00000513042.7:ENST00000426542.6:ENST00000437974.5	protein_coding	protein_coding	protein_coding	protein_coding	0	547	2	8.40644	8.451995	8.49755	1.1891e-4	5.77697e-7	0.00606093	7.27846e-5
chr17	355696	355796	6821850	0	-	0.52	(0.485,0.523]	chr17	689641	27	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	0	543	2	8.28177	8.45125	8.62073	1.18432e-4	2.69844e-7	0.00606082	4.41707e-5
chrX	1595732	1595832	7830201	0	+	0.57	(0.523,0.58]	chrX	822079	2	SS5_PROX	SS5_PROX:INTRON	AKAP17A	ENSG00000197976.12	ENST00000313871.9:ENST00000474361.6:ENST00000381261.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	544	2	8.40174	8.4504	8.49906	7.57234e-5	5.14041e-7	0.00485974	6.74657e-5
chr17	81074375	81074474	6813764	0	+	0.535354	(0.523,0.58]	chr17	688114	102	INTRON	INTRON	BAIAP2	ENSG00000175866.16	ENST00000321280.11:ENST00000576470.5:ENST00000575750.5:ENST00000428708.7:ENST00000572329.5:ENST00000575989.5:ENST00000570913.5:ENST00000575712.5:ENST00000575245.5:ENST00000321300.10:ENST00000435091.7:ENST00000573894.5:ENST00000571530.5:ENST00000572918.5:ENST00000573017.5:ENST00000575958.5:ENST00000573659.5:ENST00000572073.5:ENST00000573677.5:ENST00000574804.5:ENST00000576364.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	542	2	8.43007	8.4503	8.47053	8.76647e-5	4.07656e-7	0.00519882	5.79223e-5
chr6	31735761	31735861	3119443	0	-	0.55	(0.523,0.58]	chr6	303333	1	SS5_PROX	SS5_PROX:INTRON	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000616760.1:ENST00000375784.8	protein_coding	protein_coding	protein_coding	protein_coding	1	1196	2	7.12012	8.44833	9.77654	4.78356e-6	1.24004e-7	0.00133542	2.6803e-5
chr6	349147	349246	2824326	0	+	0.59596	(0.58,1]	chr6	277235	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DUSP22	ENSG00000112679.15	ENST00000344450.9:ENST00000603795.5:ENST00000419235.7:ENST00000603726.5:ENST00000604971.5:ENST00000604988.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	520	2	8.41337	8.442225	8.47108	2.3898e-5	9.83586e-8	0.00282051	2.30069e-5
chr16	87738626	87738726	6656467	0	-	0.56	(0.523,0.58]	chr16	665892	76	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	545	2	8.10919	8.440835	8.77248	1.72348e-4	1.4630600000000001e-07	0.00734201	2.96757e-5
chr14	68899177	68899276	5999331	0	-	0.575758	(0.523,0.58]	chr14	588704	51	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	562	2	8.10272	8.44045	8.77818	4.1728e-5	1.39766e-6	0.0035907	1.30915e-4
chr19	1413952	1414052	7187486	0	+	0.55	(0.523,0.58]	chr19	731286	35	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	1185	2	7.13839	8.44039	9.74239	5.15487e-6	1.16448e-7	0.00138171	2.59103e-5
chr8	38768794	38768894	3802243	0	+	0.52	(0.485,0.523]	chr8	365828	110	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	1416	2	7.11963	8.438845	9.75806	1.51895e-5	5.49248e-9	0.00223783	3.68976e-6
chr9	114074321	114074390	4373771	0	-	0.42029	(0.419,0.45]	chr9	418048	2	SS3_PROX	SS3_PROX:INTRON	AMBP	ENSG00000106927.12	ENST00000265132.8:ENST00000540645.5:ENST00000466610.6:ENST00000603230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	553	2	8.40915	8.436720000000001	8.46429	2.06405e-4	1.81336e-6	0.00811314	1.55823e-4
chr17	59938638	59938737	6769804	0	+	0.40404	(0.39,0.419]	chr17	682956	17	INTRON	INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000443572.6:ENST00000406116.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	1224	2	7.31092	8.436215	9.56151	1.80168e-5	1.73989e-7	0.00243518	3.32116e-5
chr18	79146348	79146447	7097713	0	+	0.656566	(0.58,1]	chr18	722822	21	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000586672.5:ENST00000590271.5:ENST00000490210.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	523	2	8.116	8.435805	8.75561	4.90617e-5	3.39137e-8	0.00385353	1.16001e-5
chr2	121478722	121478821	1262513	0	-	0.585859	(0.58,1]	chr2	136083	84	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	568	2	7.89974	8.435025	8.97031	6.08576e-6	8.03486e-7	0.00149871	9.11123e-5
chr1	12583651	12583751	402439	0	-	0.5	(0.485,0.523]	chr1	46222	26	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	573	2	7.99424	8.434365	8.87449	3.34431e-5	2.17299e-6	0.00320976	1.76047e-4
chr3	195112353	195112452	1981134	0	-	0.676768	(0.58,1]	chr3	201655	183	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000437101.5:ENST00000473200.1:ENST00000429994.5:ENST00000356740.5:ENST00000418940.5:ENST00000491138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	519	2	8.39331	8.434280000000001	8.47525	2.05537e-5	1.31332e-7	0.00263113	2.78493e-5
chr16	85590529	85590628	6518978	0	+	0.484848	(0.45,0.485]	chr16	646396	338	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	1	1435	2	7.04005	8.433445	9.82684	2.33501e-5	6.8577e-9	0.00277919	4.21173e-6
chr11	129845236	129845336	4965067	0	+	0.37	(0.36,0.39]	chr11	479911	166	INTRON	INTRON	TMEM45B	ENSG00000151715.8	ENST00000281441.8:ENST00000527754.1:ENST00000529381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	649	2	7.6461	8.43234	9.21858	3.41648e-5	1.47135e-5	0.00325398	6.74602e-4
chr16	16158405	16158501	6556439	0	-	0.5	(0.485,0.523]	chr16	653066	2	INTRON	INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	546	2	8.23018	8.431435	8.63269	5.61858e-5	9.97111e-7	0.00417057	1.04991e-4
chr10	103836317	103836417	4758468	0	-	0.49	(0.485,0.523]	chr10	454819	346	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	1	1206	2	7.00067	8.43122	9.86177	3.89915e-6	2.02032e-7	0.00122559	3.6561e-5
chr20	20490823	20490922	7534107	0	-	0.484848	(0.45,0.485]	chr20	786272	175	INTRON	INTRON	RALGAPA2	ENSG00000188559.16	ENST00000202677.12:ENST00000430436.5:ENST00000427175.2	protein_coding	protein_coding	protein_coding	protein_coding	0	608	2	7.79893	8.430959999999999	9.06299	3.03429e-5	5.4923e-6	0.00310208	3.37015e-4
chr16	81667768	81667867	6509984	0	+	0.494949	(0.485,0.523]	chr16	645961	6	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	0	564	2	8.04761	8.43074	8.81387	3.81019e-5	1.82333e-6	0.00343305	1.56156e-4
chr1	1052304	1052401	1287	0	+	0.474227	(0.45,0.485]	chr1	283	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	1463	2	7.25091	8.430685	9.61046	1.4928e-5	1.4239e-8	0.00223414	6.63759e-6
chr11	70764167	70764267	5061923	0	-	0.52	(0.485,0.523]	chr11	492701	463	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	557	2	8.09908	8.428865	8.75865	4.28995e-5	1.53886e-6	0.00362159	1.3934e-4
chr19	1171234	1171333	7305765	0	-	0.535354	(0.523,0.58]	chr19	753058	22	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	534	2	8.4076	8.426365	8.44513	8.49088e-5	5.04e-7	0.00511795	6.66494e-5
chr17	355996	356096	6821853	0	-	0.58	(0.523,0.58]	chr17	689641	30	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	2	1956	2	6.85595	8.42479	9.99363	1.00628e-5	2.13404e-9	0.00187093	2.13335e-6
chr7	47352332	47352431	3587314	0	-	0.575758	(0.523,0.58]	chr7	346030	56	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	1393	2	6.95862	8.424669999999999	9.89072	2.18463e-5	3.05902e-9	0.0027064	2.56741e-6
chr16	29273912	29274012	6433576	0	+	0.52	(0.485,0.523]	chr16	636745	218	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	556	2	8.08456	8.423615	8.76267	4.25314e-5	1.61436e-6	0.00362006	1.43996e-4
chr9	137780315	137780413	4266112	0	+	0.561224	(0.523,0.58]	chr9	407438	2	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	532	2	8.25308	8.42347	8.59386	1.27418e-4	2.68592e-7	0.00624469	4.40947e-5
chr13	113332372	113332471	5753254	0	-	0.626263	(0.58,1]	chr13	564094	59	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	1	1075	2	7.27987	8.42304	9.56621	1.3775e-6	1.99082e-8	9.46456e-4	8.23522e-6
chr20	37220108	37220207	7472018	0	+	0.414141	(0.39,0.419]	chr20	778030	59	INTRON	INTRON	RPN2	ENSG00000118705.17	ENST00000373622.9:ENST00000237530.11	protein_coding	protein_coding	protein_coding	protein_coding	0	543	2	8.35144	8.423020000000001	8.4946	2.0082e-4	1.11079e-6	0.00800644	1.11442e-4
chr20	62278275	62278372	7506891	0	+	0.505155	(0.485,0.523]	chr20	782713	1	EXON_MRNA	EXON_MRNA:INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3:ENST00000620616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	534	2	8.38039	8.4229	8.46541	8.0261e-5	6.0461e-7	0.0049792	7.52596e-5
chr19	1642168	1642268	7306931	0	-	0.65	(0.58,1]	chr19	753295	94	INTRON	INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000395423.7:ENST00000587235.6:ENST00000586318.1	protein_coding	protein_coding	protein_coding	protein_coding	0	513	2	8.41769	8.42078	8.42387	2.3295e-5	1.19965e-7	0.00277911	2.61657e-5
chr17	82006240	82006340	6815359	0	+	0.64	(0.58,1]	chr17	688641	20	EXON_MRNA	EXON_MRNA:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	5762	2	8.03855	8.420470000000002	8.80239	1.29328e-7	2.97562e-12	4.43435e-4	4.16453e-8
chr15	60542708	60542807	6284946	0	-	0.565657	(0.523,0.58]	chr15	619503	105	INTRON	INTRON	RORA	ENSG00000069667.16	ENST00000335670.11:ENST00000261523.9:ENST00000309157.8:ENST00000449337.6:ENST00000551975.5:ENST00000560004.5:ENST00000559343.1:ENST00000558234.1:ENST00000557822.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	575	2	7.92621	8.420255000000001	8.9143	3.11476e-5	2.5058e-6	0.00310936	1.94472e-4
chr9	131587137	131587235	4418988	0	-	0.530612	(0.523,0.58]	chr9	421909	22	INTRON	INTRON	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000372189.7:ENST00000683357.1:ENST00000372190.7	protein_coding	protein_coding	protein_coding	protein_coding	0	581	2	7.8848	8.41913	8.95346	2.8629e-5	2.87132e-6	0.00301681	2.13469e-4
chr1	1341003	1341084	381186	0	-	0.654321	(0.58,1]	chr1	43162	1	INTRON	INTRON	DVL1	ENSG00000107404.21	ENST00000378891.9:ENST00000378888.10	protein_coding	protein_coding	protein_coding	protein_coding	0	516	2	8.10299	8.417245000000001	8.7315	5.06194e-5	3.71311e-8	0.00393085	1.22999e-5
chr16	571451	571547	6368129	0	+	0.552083	(0.523,0.58]	chr16	627950	3	INTRON	INTRON	PIGQ	ENSG00000007541.17	ENST00000293874.2:ENST00000409527.6:ENST00000321878.10:ENST00000439574.1:ENST00000422307.6:ENST00000636657.1:ENST00000026218.9:ENST00000470411.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	1160	2	7.13536	8.414065	9.69277	5.74608e-6	1.17668e-7	0.00145941	2.59103e-5
chr22	29827900	29828000	7784836	0	-	0.5	(0.485,0.523]	chr22	816449	3	SS3_PROX	SS3_PROX:INTRON	ASCC2	ENSG00000100325.15	ENST00000542393.5:ENST00000307790.8:ENST00000458594.5:ENST00000397771.6:ENST00000449900.6:ENST00000431535.5:ENST00000495967.5:ENST00000412689.5:ENST00000465667.6:ENST00000495681.5:ENST00000462454.1:ENST00000453160.5:ENST00000460313.1:ENST00000454854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	529	2	8.21301	8.41182	8.61063	1.36905e-4	2.79187e-7	0.00649687	4.50012e-5
chr3	13203125	13203225	1691173	0	-	0.45	(0.419,0.45]	chr3	176566	386	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	543	2	8.22884	8.411515	8.59419	3.22801e-4	1.02858e-6	0.0102338	1.06505e-4
chr19	47230131	47230230	7392383	0	-	0.646465	(0.58,1]	chr19	768106	13	INTRON	INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	0	508	2	8.28679	8.41028	8.53377	3.2494e-5	7.78639e-8	0.00318677	2.02743e-5
chr10	31928282	31928382	4661830	0	-	0.7	(0.58,1]	chr10	444986	2	SS5_PROX	SS5_PROX:INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9	protein_coding	protein_coding	protein_coding	protein_coding	0	507	2	8.25773	8.40682	8.55591	3.48605e-5	7.16877e-8	0.00327476	1.90501e-5
chr17	7113816	7113916	6847772	0	-	0.52	(0.485,0.523]	chr17	693424	3	SS5_PROX	SS5_PROX:INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	1148	2	7.56932	8.405935	9.24255	1.50848e-5	2.87269e-8	0.00223783	1.03754e-5
chr3	13024295	13024395	1689379	0	-	0.5	(0.485,0.523]	chr3	176542	18	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	0	528	2	8.14081	8.403065	8.66532	1.59339e-4	2.32155e-7	0.00707035	4.0154e-5
chrX	1595832	1595932	7830202	0	+	0.53	(0.523,0.58]	chrX	822079	3	SS5_PROX	SS5_PROX:INTRON	AKAP17A	ENSG00000197976.12	ENST00000313871.9:ENST00000474361.6:ENST00000381261.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	525	2	8.38995	8.4024	8.41485	9.05391e-5	5.34849e-7	0.00527541	6.93635e-5
chr22	50710915	50711014	7755294	0	+	0.616162	(0.58,1]	chr22	812777	44	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	1157	2	6.80575	8.402384999999999	9.99902	4.63484e-7	1.19279e-7	7.30832e-4	2.6084e-5
chr3	141549472	141549572	1589084	0	+	0.45	(0.419,0.45]	chr3	167818	85	INTRON	INTRON	RASA2	ENSG00000155903.14	ENST00000286364.9	protein_coding	protein_coding	protein_coding	protein_coding	0	539	2	8.39507	8.40211	8.40915	2.35504e-4	1.81336e-6	0.00866117	1.55823e-4
chr17	82718143	82718243	6818059	0	+	0.5	(0.485,0.523]	chr17	689120	3	SS3_PROX	SS3_PROX:INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	550	2	8.04011	8.40139	8.76267	4.25314e-5	1.86893e-6	0.00362006	1.59168e-4
chr21	42848631	42848730	7675458	0	-	0.656566	(0.58,1]	chr21	802287	50	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	10	9701	2	8.32629	8.400475	8.47466	6.21019e-8	1.5089e-12	3.0757e-4	2.53414e-8
chr20	64021863	64021961	7510620	0	+	0.591837	(0.58,1]	chr20	783726	47	INTRON	INTRON	PRPF6	ENSG00000101161.8	ENST00000266079.5	protein_coding	protein_coding	protein_coding	protein_coding	1	1243	2	6.9649	8.396735	9.82857	6.2992e-6	5.66725e-10	0.00152915	9.42368e-7
chr2	121339068	121339168	1261068	0	-	0.52	(0.485,0.523]	chr2	135874	14	UTR3	UTR3:EXON_MRNA	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8	protein_coding	protein_coding	protein_coding	protein_coding	2	3115	2	8.2958	8.396645	8.49749	7.28524e-7	2.30642e-9	7.94453e-4	2.18662e-6
chr12	132536053	132536153	5352976	0	+	0.49	(0.485,0.523]	chr12	523670	77	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	1130	2	7.38926	8.3948	9.40034	1.07012e-5	5.34199e-8	0.00193507	1.56042e-5
chr4	101317211	101317311	2292851	0	-	0.5	(0.485,0.523]	chr4	230565	760	INTRON	INTRON	PPP3CA	ENSG00000138814.17	ENST00000512215.5:ENST00000394854.8:ENST00000323055.10:ENST00000394853.8:ENST00000507176.5:ENST00000529324.5:ENST00000525819.1	protein_coding	protein_coding	protein_coding	protein_coding	0	532	2	8.19006	8.39361	8.59716	6.06175e-5	1.13906e-6	0.00431624	1.13397e-4
chr16	85590029	85590129	6518973	0	+	0.41	(0.39,0.419]	chr16	646396	333	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	533	2	8.20807	8.392900000000001	8.57773	2.65653e-4	8.5682e-7	0.00923653	9.48667e-5
chr6	33409690	33409758	2898377	0	+	0.514706	(0.485,0.523]	chr6	283972	1	UTR3	UTR3:EXON_MRNA	KIFC1	ENSG00000237649.8	ENST00000428849.7	protein_coding	protein_coding	protein_coding	protein_coding	0	529	2	8.22357	8.3921500000000009	8.56073	6.55182e-5	1.01923e-6	0.00449986	1.0586e-4
chr20	34072907	34072984	7460401	0	+	0.402597	(0.39,0.419]	chr20	776607	2	INTRON	INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000413297.5:ENST00000246194.8:ENST00000333552.9:ENST00000442805.1:ENST00000493399.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	1189	2	7.42607	8.39158	9.35709	2.72072e-5	1.20402e-7	0.00294944	2.61931e-5
chr13	113332172	113332272	5753252	0	-	0.56	(0.523,0.58]	chr13	564094	57	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	1	1124	2	7.3121	8.39121	9.47032	9.33874e-6	6.39695e-8	0.00182974	1.73561e-5
chr17	81138098	81138198	6982883	0	-	0.55	(0.523,0.58]	chr17	713268	32	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	529	2	8.20719	8.390625	8.57406	6.45528e-5	9.86927e-7	0.00446482	1.04311e-4
chr10	74618990	74619090	4516377	0	+	0.49	(0.485,0.523]	chr10	431987	181	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	522	2	8.15309	8.389420000000001	8.62575	1.55282e-4	2.65312e-7	0.00693487	4.36902e-5
chr1	1341166	1341266	381188	0	-	0.59	(0.58,1]	chr1	43163	1	SS5_PROX	SS5_PROX:INTRON	DVL1	ENSG00000107404.21	ENST00000378891.9:ENST00000378888.10	protein_coding	protein_coding	protein_coding	protein_coding	0	503	2	8.14167	8.388845	8.63602	4.61244e-5	5.31265e-8	0.00374349	1.56042e-5
chr2	239345783	239345883	1392168	0	-	0.46	(0.45,0.485]	chr2	148752	213	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	1150	2	7.48619	8.38813	9.29007	1.88141e-5	5.33411e-8	0.00249961	1.56042e-5
chr22	24101837	24101928	7695380	0	+	0.505495	(0.485,0.523]	chr22	805520	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CABIN1:ENSG00000232545	ENSG00000099991.18:ENSG00000232545.1	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1:ENST00000444093.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	0	530	2	7.99825	8.388069999999999	8.77789	2.14694e-4	1.58634e-7	0.00828194	3.12332e-5
chr19	6692024	6692124	7322662	0	-	0.49	(0.485,0.523]	chr19	756435	9	INTRON	INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000695653.1:ENST00000695654.1:ENST00000695692.1:ENST00000695652.1:ENST00000695655.1:ENST00000598805.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	1874	2	6.69532	8.38796	10.0806	1.41212e-5	1.79132e-9	0.00218388	1.92869e-6
chr9	134368576	134368676	4261109	0	+	0.49	(0.485,0.523]	chr9	406311	416	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	539	2	8.07725	8.387145	8.69704	4.89573e-5	1.65376e-6	0.00385211	1.46103e-4
chr7	55067839	55067939	3372034	0	+	0.52	(0.485,0.523]	chr7	325289	239	INTRON	INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000463948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	531	2	8.15574	8.385385	8.61503	5.83466e-5	1.27613e-6	0.0042453	1.23031e-4
chr16	1736255	1736353	6371301	0	+	0.612245	(0.58,1]	chr16	628851	8	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	510	2	7.98031	8.384505	8.7887	6.7909e-5	2.99432e-8	0.00459677	1.07156e-5
chr16	87738926	87739025	6656470	0	-	0.575758	(0.523,0.58]	chr16	665892	79	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	1117	2	7.41312	8.38294	9.35276	1.20618e-5	4.5103e-8	0.00201743	1.41059e-5
chr1	23393278	23393378	424248	0	-	0.5	(0.485,0.523]	chr1	49807	55	INTRON	INTRON	TCEA3	ENSG00000204219.11	ENST00000450454.7:ENST00000476978.2	protein_coding	protein_coding	protein_coding	protein_coding	0	517	2	8.18934	8.379425	8.56951	1.43895e-4	3.2065e-7	0.00669515	4.95473e-5
chr17	62062566	62062666	6943712	0	-	0.43	(0.419,0.45]	chr17	708045	1	SS5_PROX	SS5_PROX:INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	0	536	2	8.22914	8.37743	8.52572	1.83557e-4	3.13565e-6	0.0076359	2.26992e-4
chr7	138001103	138001203	3720714	0	-	0.4	(0.39,0.419]	chr7	357312	1	SS5_PROX	SS5_PROX:INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5:ENST00000468127.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	584	2	7.79198	8.377335	8.96269	5.9974e-5	9.61081e-6	0.00429933	4.98808e-4
chr22	19909487	19909586	7765139	0	-	0.494949	(0.485,0.523]	chr22	813988	101	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	523	2	8.21693	8.377205	8.53748	6.88469e-5	1.04195e-6	0.00463913	1.07093e-4
chr1	1341084	1341166	381187	0	-	0.573171	(0.523,0.58]	chr1	43162	2	INTRON	INTRON	DVL1	ENSG00000107404.21	ENST00000378891.9:ENST00000378888.10	protein_coding	protein_coding	protein_coding	protein_coding	0	525	2	7.99099	8.37718	8.76337	2.2056e-4	1.50923e-7	0.00839442	3.00675e-5
chr9	4713890	4713988	4269909	0	-	0.44898	(0.419,0.45]	chr9	407900	4	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	1	1249	2	7.75152	8.376795	9.00207	7.33469e-5	5.36709e-8	0.00479028	1.56042e-5
chr13	20497393	20497493	5662814	0	-	0.47	(0.45,0.485]	chr13	556208	75	INTRON	INTRON	CRYL1	ENSG00000165475.15	ENST00000643035.1:ENST00000644593.1:ENST00000298248.12:ENST00000644872.1:ENST00000382812.5:ENST00000643750.1:ENST00000644153.1:ENST00000643887.1:ENST00000644167.1:ENST00000646414.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	534	2	8.11426	8.375599999999999	8.63694	7.38449e-5	2.00586e-6	0.00480458	1.67176e-4
chr6	158020089	158020188	3059693	0	+	0.494949	(0.485,0.523]	chr6	297373	19	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	0	515	2	8.21301	8.37545	8.53789	1.36905e-4	3.56636e-7	0.00649687	5.30519e-5
chr19	35003025	35003125	7244890	0	+	0.47	(0.45,0.485]	chr19	742072	2	SS5_PROX	SS5_PROX:INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	1285	2	6.60009	8.374095	10.1481	3.03723e-6	1.01565e-6	0.00112905	1.05816e-4
chr19	2335917	2336017	7189480	0	+	0.39	(0.36,0.39]	chr19	731782	8	INTRON	INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	524	2	8.32098	8.37245	8.42392	2.04454e-4	1.36351e-6	0.00807449	1.28648e-4
chr1	1030324	1030423	1018	0	+	0.555556	(0.523,0.58]	chr1	166	75	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	513	2	8.33083	8.372135	8.41344	1.08149e-4	4.94192e-7	0.00581149	6.59235e-5
chr19	6678789	6678872	7322505	0	-	0.481928	(0.45,0.485]	chr19	756371	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000599899.5:ENST00000695690.1:ENST00000695691.1:ENST00000695689.1:ENST00000695653.1:ENST00000695654.1:ENST00000602229.1:ENST00000599668.1:ENST00000601008.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	1552	2	7.22933	8.372115	9.5149	1.16954e-5	2.55334e-8	0.00199735	9.74598e-6
chr18	79145652	79145751	7097706	0	+	0.646465	(0.58,1]	chr18	722822	14	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000586672.5:ENST00000590271.5:ENST00000490210.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	497	2	8.12889	8.37199	8.61509	4.75643e-5	5.74578e-8	0.00379612	1.61638e-5
chr8	38769593	38769693	3802251	0	+	0.53	(0.523,0.58]	chr8	365828	118	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	1121	2	7.12929	8.371025	9.61276	6.84422e-6	1.20155e-7	0.00157697	2.61732e-5
chr16	85398932	85399032	6517060	0	+	0.46	(0.45,0.485]	chr16	646391	396	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	546	2	7.97302	8.369405	8.76579	5.64926e-5	3.15599e-6	0.00418116	2.27679e-4
chr19	33203186	33203286	7240904	0	+	0.49	(0.485,0.523]	chr19	741409	2	SS5_PROX	SS5_PROX:INTRON	LRP3	ENSG00000130881.14	ENST00000592484.5:ENST00000253193.9:ENST00000590275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	523	2	7.97767	8.3687	8.75973	2.241e-4	1.68702e-7	0.00845454	3.25988e-5
chr9	131586943	131587040	4418986	0	-	0.536082	(0.523,0.58]	chr9	421909	20	INTRON	INTRON	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000372189.7:ENST00000683357.1:ENST00000372190.7	protein_coding	protein_coding	protein_coding	protein_coding	0	556	2	7.85938	8.36672	8.87406	3.39645e-5	3.12125e-6	0.00324013	2.26144e-4
chrX	9568841	9568940	7843488	0	+	0.515152	(0.485,0.523]	chrX	822423	79	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	1110	2	7.25723	8.36644	9.47565	9.08039e-6	8.40623e-8	0.00182087	2.12282e-5
chr20	62278470	62278568	7506893	0	+	0.489796	(0.485,0.523]	chr20	782713	3	EXON_MRNA	EXON_MRNA:INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3:ENST00000620616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	514	2	8.30724	8.366344999999999	8.42545	8.73719e-5	7.71714e-7	0.00518923	8.87873e-5
chr1	11080549	11080620	399731	0	-	0.450704	(0.45,0.485]	chr1	45635	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EXOSC10	ENSG00000171824.14	ENST00000304457.11:ENST00000376936.9:ENST00000474216.5:ENST00000472078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	518	2	8.26857	8.362565	8.45656	1.07242e-4	1.2182e-6	0.00578018	1.1904e-4
chr2	121478921	121479020	1262515	0	-	0.565657	(0.523,0.58]	chr2	136083	86	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	565	2	7.7893	8.362545	8.93579	2.97395e-5	3.92607e-6	0.00307209	2.66734e-4
chr16	89914383	89914478	6526320	0	+	0.557895	(0.523,0.58]	chr16	647716	9	UTR5	UTR5:EXON_MRNA:INTRON	ENSG00000267048:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000539976.1:ENST00000555427.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	2	1608	2	7.54698	8.362210000000001	9.17744	1.76461e-5	5.37586e-9	0.00241784	3.6712e-6
chr1	48227166	48227265	120971	0	+	0.525253	(0.523,0.58]	chr1	15165	20	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	1103	2	7.24623	8.361945	9.47766	9.19048e-6	8.03073e-8	0.00182087	2.06543e-5
chr8	22064134	22064233	3769013	0	+	0.434343	(0.419,0.45]	chr8	362410	43	INTRON	INTRON	DMTN	ENSG00000158856.19	ENST00000522148.5:ENST00000523300.5:ENST00000519959.1:ENST00000381470.7:ENST00000519850.5:ENST00000432128.6:ENST00000443491.6:ENST00000517305.5:ENST00000518816.5:ENST00000517600.5:ENST00000523782.6:ENST00000520856.1:ENST00000523623.5:ENST00000358242.6:ENST00000520174.5:ENST00000517804.5:ENST00000265800.9:ENST00000517418.5:ENST00000523266.5:ENST00000519907.5:ENST00000415253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	586	2	7.74819	8.3617	8.97521	7.72643e-5	1.32446e-5	0.00490778	6.28604e-4
chr16	2164301	2164401	6372945	0	+	0.62	(0.58,1]	chr16	629423	3	SS5_PROX	SS5_PROX:INTRON	TRAF7	ENSG00000131653.13	ENST00000565383.5:ENST00000569686.5:ENST00000326181.11:ENST00000567653.5:ENST00000564067.5:ENST00000567645.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	1025	2	7.53378	8.361495	9.18921	3.53394e-6	7.56079e-9	0.00120797	4.38489e-6
chr20	63732718	63732818	7509366	0	+	0.4	(0.39,0.419]	chr20	783516	1	SS3_PROX	SS3_PROX:INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	560	2	7.7153	8.3611	9.0069	6.8543e-4	2.21802e-7	0.0154116	3.91312e-5
chr10	103701508	103701608	4757115	0	-	0.46	(0.45,0.485]	chr10	454791	80	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	520	2	8.21014	8.359950000000001	8.50976	9.60894e-5	1.47201e-6	0.0054806	1.35091e-4
chr5	175881536	175881635	2594670	0	+	0.484848	(0.45,0.485]	chr5	257471	16	UTR3	UTR3:EXON_MRNA	CPLX2	ENSG00000145920.15	ENST00000359546.8:ENST00000393745.8	protein_coding	protein_coding	protein_coding	protein_coding	1	1618	2	8.08812	8.359705	8.63129	2.28027e-4	1.09802e-9	0.00851975	1.38653e-6
chr13	113614043	113614142	5659141	0	+	0.444444	(0.419,0.45]	chr13	555781	26	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	565	2	7.69097	8.35766	9.02435	8.81239e-4	2.71646e-7	0.0176886	4.42502e-5
chr10	27141591	27141689	4651965	0	-	0.408163	(0.39,0.419]	chr10	444170	49	INTRON	INTRON	YME1L1	ENSG00000136758.20	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000491542.6:ENST00000427324.5:ENST00000396296.7	protein_coding	protein_coding	protein_coding	protein_coding	0	525	2	8.2184	8.35728	8.49616	1.51176e-4	2.61595e-6	0.00686204	1.99489e-4
chr16	4082570	4082670	6541456	0	-	0.56	(0.523,0.58]	chr16	650517	285	INTRON	INTRON	ADCY9	ENSG00000162104.10	ENST00000294016.8:ENST00000571467.1:ENST00000572288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	1113	2	7.09227	8.35695	9.62163	6.71293e-6	1.36465e-7	0.00156661	2.8448e-5
chr2	3294303	3294403	1081050	0	-	0.59	(0.58,1]	chr2	117633	116	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	491	2	8.3369	8.356455	8.37601	2.61708e-5	1.61878e-7	0.00292399	3.16494e-5
chr1	40374566	40374647	100235	0	+	0.530864	(0.523,0.58]	chr1	11923	4	SS5_PROX	SS5_PROX:INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8	protein_coding	protein_coding	protein_coding	protein_coding	0	516	2	8.18006	8.356205	8.53235	7.05476e-5	1.08043e-6	0.00470747	1.09706e-4
chr7	66532669	66532768	3595436	0	-	0.383838	(0.36,0.39]	chr7	346886	4	INTRON	INTRON	RABGEF1P1	ENSG00000229180.8	ENST00000449307.3:ENST00000639011.1:ENST00000692299.1:ENST00000686269.1:ENST00000649635.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	518	2	8.29389	8.35609	8.41829	2.15621e-4	1.38761e-6	0.00831411	1.30178e-4
chr17	3642061	3642161	6670313	0	+	0.61	(0.58,1]	chr17	668175	14	INTRON	INTRON	CTNS	ENSG00000040531.16	ENST00000381870.8:ENST00000673965.1:ENST00000452111.5:ENST00000673669.1:ENST00000574776.6:ENST00000488623.6:ENST00000495445.5:ENST00000467663.5:ENST00000046640.9:ENST00000574218.1:ENST00000399306.7:ENST00000576979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	489	2	8.24595	8.355599999999999	8.46525	3.58683e-5	1.00519e-7	0.00330375	2.33173e-5
chr19	35002925	35003025	7244889	0	+	0.48	(0.45,0.485]	chr19	742072	1	SS5_PROX	SS5_PROX:INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	562	2	7.80771	8.35499	8.90227	4.2491e-5	5.34158e-6	0.00362006	3.30369e-4
chr2	86760936	86761036	846254	0	+	0.43	(0.419,0.45]	chr2	95479	70	INTRON	INTRON	RMND5A	ENSG00000153561.13	ENST00000283632.5	protein_coding	protein_coding	protein_coding	protein_coding	0	554	2	7.92429	8.353875	8.78346	1.11915e-4	7.84779e-6	0.00590007	4.32984e-4
chr12	132742753	132742853	5539928	0	-	0.51	(0.485,0.523]	chr12	546703	2	SS5_PROX	SS5_PROX:INTRON	ANKLE2	ENSG00000176915.15	ENST00000357997.10:ENST00000539605.5:ENST00000538591.5:ENST00000535036.5:ENST00000545623.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	507	2	8.15309	8.3508	8.54851	1.55282e-4	3.44128e-7	0.00693487	5.18663e-5
chr17	55306544	55306644	6757529	0	+	0.39	(0.36,0.39]	chr17	681718	172	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	1399	2	6.95283	8.350325	9.74782	3.99553e-5	2.03753e-8	0.00351956	8.34621e-6
chr13	113613844	113613944	5659139	0	+	0.51	(0.485,0.523]	chr13	555781	24	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	546	2	7.67091	8.34656	9.02221	4.22356e-4	6.91076e-8	0.011772	1.85405e-5
chr8	38769294	38769394	3802248	0	+	0.49	(0.485,0.523]	chr8	365828	115	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	1320	2	6.92982	8.345085000000001	9.76035	2.29774e-5	5.44916e-9	0.00276344	3.6847e-6
chr10	103701608	103701708	4757116	0	-	0.48	(0.45,0.485]	chr10	454791	81	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	526	2	8.03418	8.342054999999998	8.64993	7.18818e-5	2.59459e-6	0.00475775	1.98973e-4
chr2	239282576	239282676	1391534	0	-	0.44	(0.419,0.45]	chr2	148740	310	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	539	2	7.82483	8.340720000000001	8.85661	6.88099e-4	4.57476e-7	0.0154438	6.24644e-5
chr10	47533181	47533281	4680514	0	-	0.53	(0.523,0.58]	chr10	446443	93	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	1	1098	2	7.08914	8.339745	9.59035	7.18751e-6	1.3794e-7	0.00161806	2.85764e-5
chr2	3220740	3220840	1080308	0	-	0.55	(0.523,0.58]	chr2	117609	61	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000482570.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	540	2	7.67048	8.336645	9.00281	4.27349e-4	6.65097e-8	0.0118572	1.79583e-5
chr1	3470376	3470471	5812	0	+	0.610526	(0.58,1]	chr1	1229	4	INTRON	INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5	protein_coding	protein_coding	protein_coding	protein_coding	0	522	2	7.8558	8.33562	8.81544	8.92316e-6	9.41966e-7	0.00180651	1.00744e-4
chr5	1103505	1103604	2608886	0	-	0.535354	(0.523,0.58]	chr5	259667	89	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	0	502	2	8.27927	8.334195000000001	8.38912	9.561e-5	7.75553e-7	0.00546375	8.87873e-5
chr20	62278666	62278764	7506895	0	+	0.489796	(0.485,0.523]	chr20	782713	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3:ENST00000620616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	503	2	8.25633	8.33325	8.41017	9.02506e-5	9.14167e-7	0.00526893	9.84802e-5
chr10	132754972	132755072	4619022	0	+	0.51	(0.485,0.523]	chr10	441201	11	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	0	504	2	8.04516	8.332944999999999	8.62073	1.94674e-4	2.69844e-7	0.00785001	4.41707e-5
chr10	127261923	127262023	4610546	0	+	0.52	(0.485,0.523]	chr10	440799	41	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2:ENST00000484400.5:ENST00000464466.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	520	2	7.82477	8.332245	8.83972	3.07754e-4	1.28622e-7	0.00996934	2.73784e-5
chr20	348392	348492	7414001	0	+	0.5	(0.485,0.523]	chr20	772226	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NRSN2	ENSG00000125841.13	ENST00000609179.5:ENST00000492242.5:ENST00000382291.7:ENST00000609504.5:ENST00000382285.7:ENST00000608467.5:ENST00000470439.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	499	2	8.23629	8.33173	8.42717	1.30353e-4	5.17045e-7	0.00633355	6.77873e-5
chr2	3220840	3220940	1080309	0	-	0.48	(0.45,0.485]	chr2	117609	62	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000482570.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	571	2	7.49944	8.331669999999999	9.1639	7.40531e-4	6.3718e-8	0.0160724	1.73561e-5
chr19	40089589	40089665	7379225	0	-	0.486842	(0.485,0.523]	chr19	765585	2	SS3_PROX	SS3_PROX:INTRON	ZNF780A	ENSG00000197782.15	ENST00000450241.6:ENST00000414720.6:ENST00000455521.5:ENST00000340963.9:ENST00000683561.1:ENST00000595687.6:ENST00000594395.5:ENST00000595773.5:ENST00000599368.5:ENST00000601715.5:ENST00000601688.5:ENST00000599972.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	0	511	2	8.10629	8.331199999999999	8.55611	6.61668e-5	1.5027e-6	0.00451657	1.372e-4
chr16	1735566	1735664	6371294	0	+	0.55102	(0.523,0.58]	chr16	628851	1	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	507	2	7.96336	8.330645	8.69793	2.33606e-4	1.88606e-7	0.00863036	3.51952e-5
chrX	2234324	2234424	7966181	0	-	0.53	(0.523,0.58]	chrX	834328	127	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11	protein_coding	protein_coding	protein_coding	protein_coding	0	543	2	7.81598	8.330020000000001	8.84406	3.62259e-5	3.59812e-6	0.0033207	2.5106e-4
chr13	98415418	98415517	5636423	0	+	0.444444	(0.419,0.45]	chr13	553617	30	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000457029.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	1312	2	6.49034	8.32872	10.1671	7.47263e-6	2.75203e-6	0.00164894	2.0652e-4
chr2	235512133	235512233	1062717	0	+	0.48	(0.45,0.485]	chr2	115651	169	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	507	2	8.21014	8.328410000000002	8.44668	1.09451e-4	1.47201e-6	0.00583571	1.35091e-4
chr9	131586554	131586651	4418982	0	-	0.536082	(0.523,0.58]	chr9	421909	16	INTRON	INTRON	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000372189.7:ENST00000683357.1:ENST00000372190.7	protein_coding	protein_coding	protein_coding	protein_coding	0	530	2	7.90151	8.32785	8.75419	4.39298e-5	2.71794e-6	0.00367146	2.04763e-4
chr20	47257207	47257306	7569886	0	-	0.343434	(0.33,0.36]	chr20	791018	74	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	507	2	8.08588	8.327295	8.56871	2.43979e-4	6.49754e-7	0.00884339	7.91791e-5
chr2	239269286	239269386	1391401	0	-	0.46	(0.45,0.485]	chr2	148740	177	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	505	2	8.24289	8.3272100000000009	8.41153	1.1767e-4	1.32392e-6	0.00604154	1.2605e-4
chr19	35001244	35001344	7244870	0	+	0.51	(0.485,0.523]	chr19	742061	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	569	2	7.65419	8.326515	8.99884	2.55764e-5	6.56483e-6	0.00289335	3.8256e-4
chr19	6678624	6678706	7322503	0	-	0.5	(0.485,0.523]	chr19	756371	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000599899.5:ENST00000695690.1:ENST00000695691.1:ENST00000695689.1:ENST00000695653.1:ENST00000695654.1:ENST00000602229.1:ENST00000599668.1:ENST00000601008.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	1083	2	7.46304	8.324955000000001	9.18687	1.70232e-5	4.14405e-8	0.00237123	1.3282e-5
chr10	75709258	75709358	4523256	0	+	0.4	(0.39,0.419]	chr10	432271	613	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	515	2	7.98262	8.32424	8.66586	4.11039e-4	6.50138e-7	0.0116246	7.91791e-5
chr11	70764467	70764567	5061926	0	-	0.51	(0.485,0.523]	chr11	492701	466	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	506	2	8.12059	8.32197	8.52335	7.09509e-5	1.43338e-6	0.0047097	1.3278e-4
chr1	91013451	91013551	525643	0	-	0.43	(0.419,0.45]	chr1	61801	307	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	1168	2	6.94118	8.32066	9.70014	1.87641e-5	6.83304e-7	0.00249961	8.15044e-5
chr2	3295201	3295301	1081059	0	-	0.62	(0.58,1]	chr2	117633	125	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	481	2	8.23082	8.319455	8.40809	2.42069e-5	2.39537e-7	0.00283574	4.07877e-5
chr20	64269896	64269995	7511211	0	+	0.656566	(0.58,1]	chr20	783907	15	INTRON	INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609818.1	protein_coding	protein_coding	protein_coding	protein_coding	1	1101	2	6.69444	8.318995000000001	9.94355	5.3313e-7	1.80878e-7	7.30832e-4	3.42091e-5
chr11	70585629	70585729	5060129	0	-	0.5	(0.485,0.523]	chr11	492663	823	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	501	2	8.15574	8.315484999999999	8.47523	7.86027e-5	1.27613e-6	0.00494046	1.23031e-4
chrX	2234224	2234324	7966180	0	-	0.59	(0.58,1]	chrX	834328	126	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11	protein_coding	protein_coding	protein_coding	protein_coding	0	507	2	7.89106	8.314335	8.73761	1.08085e-5	8.29156e-7	0.00194513	9.27737e-5
chr7	73598754	73598844	3602844	0	-	0.511111	(0.485,0.523]	chr7	347628	7	INTRON	INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	494	2	8.09058	8.311565	8.53255	1.77028e-4	3.63093e-7	0.00747595	5.39111e-5
chr8	726956	727056	3933000	0	-	0.49	(0.485,0.523]	chr8	376060	106	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	493	2	8.12218	8.31114	8.5001	1.65689e-4	4.04911e-7	0.00722431	5.76787e-5
chr16	1739012	1739110	6371329	0	+	0.581633	(0.58,1]	chr16	628851	36	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	474	2	8.17934	8.310500000000001	8.44166	4.21242e-5	1.09737e-7	0.00361086	2.49389e-5
chr3	73004940	73005040	1502809	0	+	0.54	(0.523,0.58]	chr3	160766	64	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000495566.1:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	496	2	8.20046	8.3102	8.41994	8.95674e-5	1.00936e-6	0.00524798	1.05357e-4
chr11	68351017	68351116	4882468	0	+	0.565657	(0.523,0.58]	chr11	470548	24	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	509	2	8.01332	8.309505	8.60569	6.03441e-5	1.87974e-6	0.0043082	1.59522e-4
chr6	1737979	1738078	3080251	0	-	0.464646	(0.45,0.485]	chr6	299476	111	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	495	2	8.17452	8.308364999999998	8.44221	1.91251e-4	6.92271e-7	0.00779591	8.22818e-5
chr17	2679413	2679511	6667324	0	+	0.428571	(0.419,0.45]	chr17	667990	14	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000397195.10:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000397193.7:ENST00000574468.1:ENST00000571495.2:ENST00000675574.1:ENST00000675385.1:ENST00000675084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	514	2	8.10231	8.30704	8.51177	1.88515e-4	4.60051e-6	0.0077446	2.97168e-4
chr8	133287859	133287959	4084203	0	-	0.39	(0.36,0.39]	chr8	388351	2	SS5_PROX	SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000676005.1:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1:ENST00000674839.1:ENST00000676064.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	730	2	7.05992	8.306854999999999	9.55379	8.20206e-5	1.73364e-5	0.00238872	0.00236018
chr20	41559825	41559925	7564236	0	-	0.48	(0.45,0.485]	chr20	790090	81	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	502	2	8.13535	8.305745	8.47614	1.02998e-4	1.8741e-6	0.0056665	1.59446e-4
chr2	186127410	186127510	1338577	0	-	0.37	(0.36,0.39]	chr2	142311	85	INTRON	INTRON	LINC01473	ENSG00000237877.7	ENST00000658984.1:ENST00000658990.1:ENST00000655126.1:ENST00000667839.1:ENST00000670612.1:ENST00000668985.1:ENST00000661574.1:ENST00000666677.1:ENST00000665629.1:ENST00000671116.1:ENST00000419719.2:ENST00000667056.1:ENST00000671599.1	lncRNA	lncRNA	lncRNA	lncRNA	1	1124	2	7.03595	8.302814999999999	9.56968	1.67858e-5	4.12048e-7	0.00236028	5.82888e-5
chr1	12582856	12582955	402431	0	-	0.555556	(0.523,0.58]	chr1	46222	18	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	514	2	7.93435	8.30278	8.67121	5.2466e-5	2.43952e-6	0.0040205	1.90739e-4
chr1	3470282	3470376	5811	0	+	0.585106	(0.58,1]	chr1	1229	3	INTRON	INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5	protein_coding	protein_coding	protein_coding	protein_coding	0	529	2	7.69555	8.301825	8.9081	7.09842e-6	1.6765e-6	0.00160612	1.47289e-4
chr4	1324497	1324594	1995283	0	+	0.515464	(0.485,0.523]	chr4	203264	5	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	491	2	8.0648	8.301345000000001	8.53789	1.86842e-4	3.56636e-7	0.00769712	5.30519e-5
chr9	134339534	134339634	4260818	0	+	0.55	(0.523,0.58]	chr9	406311	125	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	490	2	8.25996	8.300785	8.34161	1.05715e-4	8.27326e-7	0.00574304	9.26925e-5
chr17	49678009	49678086	6925780	0	-	0.558442	(0.523,0.58]	chr17	705510	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	SPOP	ENSG00000121067.19	ENST00000393328.6:ENST00000504102.6:ENST00000347630.6:ENST00000514121.6:ENST00000509079.6:ENST00000513080.6:ENST00000505581.5:ENST00000506399.5:ENST00000507970.5:ENST00000515508.6:ENST00000451526.6:ENST00000502385.1:ENST00000509765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	503	2	7.8472	8.3007	8.7542	2.97175e-4	1.55715e-7	0.00982269	3.07667e-5
chr15	65368114	65368213	6303649	0	-	0.515152	(0.485,0.523]	chr15	621389	119	INTRON	INTRON	IGDCC3	ENSG00000174498.14	ENST00000327987.9	protein_coding	protein_coding	protein_coding	protein_coding	0	490	2	8.07775	8.29978	8.52181	1.81848e-4	3.76432e-7	0.00759001	5.51827e-5
chr20	36858375	36858475	7557085	0	-	0.48	(0.45,0.485]	chr20	789155	186	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	0	491	2	8.22745	8.2972	8.36695	1.7166e-4	8.8487e-7	0.00733109	9.69154e-5
chr3	186103605	186103705	1972211	0	-	0.42	(0.419,0.45]	chr3	200543	79	INTRON	INTRON	ETV5	ENSG00000244405.8	ENST00000306376.10:ENST00000434744.5:ENST00000472868.6:ENST00000440773.5:ENST00000421809.5:ENST00000413301.5:ENST00000422039.1:ENST00000476890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	1123	2	7.20383	8.29456	9.38529	3.47822e-5	3.0101e-7	0.00327084	4.75573e-5
chr3	37862478	37862578	1443268	0	+	0.6	(0.58,1]	chr3	153955	2	SS5_PROX	SS5_PROX:INTRON	CTDSPL	ENSG00000144677.15	ENST00000273179.10:ENST00000443503.6:ENST00000435525.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	1581	2	6.39581	8.294205	10.1926	2.84158e-7	3.6617e-8	6.80894e-4	1.22043e-5
chr17	80634162	80634261	6809796	0	+	0.494949	(0.485,0.523]	chr17	687816	80	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	492	2	7.97767	8.29415	8.61063	2.241e-4	2.79187e-7	0.00845454	4.50012e-5
chr11	70776558	70776658	5062047	0	-	0.4	(0.39,0.419]	chr11	492701	587	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	503	2	8.14533	8.294145	8.44296	1.67839e-4	3.27572e-6	0.00724399	2.34005e-4
chr20	62278568	62278666	7506894	0	+	0.479592	(0.45,0.485]	chr20	782713	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3:ENST00000620616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	500	2	8.08565	8.292945	8.50024	9.79993e-5	2.19928e-6	0.00553563	1.77833e-4
chr16	57376676	57376774	6466031	0	+	0.530612	(0.523,0.58]	chr16	641365	37	INTRON	INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1	protein_coding	protein_coding	protein_coding	protein_coding	0	486	2	8.09015	8.29145	8.49275	1.7935e-4	3.78188e-7	0.00754111	5.51827e-5
chr7	6703077	6703175	3542744	0	-	0.44898	(0.419,0.45]	chr7	342318	23	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	0	506	2	8.12309	8.29127	8.45945	2.08318e-4	4.3211e-6	0.00813372	2.84036e-4
chr20	34471715	34471815	7461885	0	+	0.33	(0.29,0.33]	chr20	776788	2	SS5_PROX	SS5_PROX:INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000262650.10:ENST00000665346.1:ENST00000483727.5:ENST00000461661.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	484	2	8.20818	8.288575	8.36897	1.1331e-4	7.19554e-7	0.00593849	8.44488e-5
chr1	1030423	1030523	1019	0	+	0.55	(0.523,0.58]	chr1	166	76	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	484	2	8.24736	8.288435	8.32951	1.28961e-4	6.5531e-7	0.00629953	7.93487e-5
chr18	76418166	76418266	7179301	0	-	0.41	(0.39,0.419]	chr18	730080	375	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	502	2	7.94832	8.28784	8.62736	4.39083e-4	7.33549e-7	0.012033	8.52572e-5
chr18	79146149	79146248	7097711	0	+	0.666667	(0.58,1]	chr18	722822	19	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000586672.5:ENST00000590271.5:ENST00000490210.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	467	2	8.09644	8.28667	8.4769	5.14219e-5	9.62528e-8	0.00397585	2.2738e-5
chr11	120328617	120328712	4951106	0	+	0.4	(0.39,0.419]	chr11	478339	6	INTRON	INTRON	TLCD5	ENSG00000181264.9	ENST00000531346.1:ENST00000314475.6:ENST00000375095.3:ENST00000529187.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	494	2	8.24809	8.2863	8.32451	2.45735e-4	1.88459e-6	0.00885847	1.59853e-4
chr11	70874020	70874120	5063027	0	-	0.38	(0.36,0.39]	chr11	492728	10	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000645599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	495	2	8.23187	8.28443	8.33699	1.98122e-4	2.47356e-6	0.00794162	1.92772e-4
chr10	34750398	34750498	4671162	0	-	0.4	(0.39,0.419]	chr10	445543	536	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	525	2	7.68229	8.283999999999999	8.88571	7.29725e-4	3.25437e-7	0.0159289	5.0097e-5
chr3	37862578	37862678	1443269	0	+	0.47	(0.45,0.485]	chr3	153955	3	SS5_PROX	SS5_PROX:INTRON	CTDSPL	ENSG00000144677.15	ENST00000273179.10:ENST00000443503.6:ENST00000435525.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	1070	2	7.08765	8.282095	9.47654	1.26853e-5	2.02456e-7	0.0020724	3.6561e-5
chr1	12583055	12583154	402433	0	-	0.494949	(0.485,0.523]	chr1	46222	20	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	489	2	8.12769	8.281614999999999	8.43554	8.55192e-5	1.40015e-6	0.00513437	1.3093e-4
chr13	113057199	113057299	5656209	0	+	0.54	(0.523,0.58]	chr13	555189	24	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	505	2	7.92621	8.281425	8.63664	5.64877e-5	2.5058e-6	0.00418116	1.94472e-4
chr1	31578388	31578488	81028	0	+	0.38	(0.36,0.39]	chr1	9279	2	SS5_PROX	SS5_PROX:INTRON	LINC01226:TINAGL1	ENSG00000284543.1:ENSG00000142910.16	ENST00000639839.1:ENST00000640226.1:ENST00000457433.6:ENST00000271064.12:ENST00000461030.5:ENST00000478398.5:ENST00000481165.5:ENST00000537531.2:ENST00000468635.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	658	2	7.21084	8.280725	9.35061	5.30999e-5	2.61673e-5	0.00292399	0.00171796
chr17	78798221	78798320	6979431	0	-	0.545455	(0.523,0.58]	chr17	712642	27	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	USP36	ENSG00000055483.20	ENST00000588130.5:ENST00000587010.5:ENST00000591052.5:ENST00000589225.5:ENST00000587379.1:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	481	2	8.20669	8.280339999999999	8.35399	1.40478e-4	6.0359e-7	0.00660164	7.52596e-5
chr13	113056401	113056501	5656201	0	+	0.56	(0.523,0.58]	chr13	555189	16	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	497	2	7.99787	8.27908	8.56029	6.64742e-5	1.97827e-6	0.00453017	1.65213e-4
chr10	103701309	103701409	4757113	0	-	0.47	(0.45,0.485]	chr10	454791	78	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	506	2	7.94144	8.27824	8.61504	7.72769e-5	3.49104e-6	0.00490778	2.45572e-4
chr15	28216897	28216996	6207140	0	-	0.454545	(0.45,0.485]	chr15	611111	7	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	0	485	2	8.10707	8.277455	8.44784	2.19409e-4	6.79656e-7	0.00837681	8.13055e-5
chr8	726359	726459	3932994	0	-	0.52	(0.485,0.523]	chr8	376060	100	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	481	2	8.1033	8.27665	8.45	0.00017237400000000001	4.7898e-7	0.00734201	6.43542e-5
chr7	1070483	1070583	3526932	0	-	0.58	(0.523,0.58]	chr7	340585	153	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	480	2	8.24736	8.275985	8.30461	1.28961e-4	7.1241e-7	0.00629953	8.36689e-5
chr22	32671158	32671258	7791370	0	-	0.48	(0.45,0.485]	chr22	817442	409	INTRON	INTRON	SYN3	ENSG00000185666.15	ENST00000358763.7:ENST00000462268.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	528	2	7.574	8.275974999999999	8.97795	6.39309e-4	1.18389e-7	0.0148613	2.59907e-5
chr17	77215091	77215188	6803125	0	+	0.494845	(0.485,0.523]	chr17	686684	12	UTR3	UTR3:EXON_MRNA:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	2	1403	2	6.64029	8.27496	9.90963	3.51005e-6	1.36884e-7	0.00120797	2.84872e-5
chr16	1738421	1738520	6371323	0	+	0.575758	(0.523,0.58]	chr16	628851	30	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	484	2	7.97032	8.27434	8.57836	2.30252e-4	2.83082e-7	0.00855862	4.54517e-5
chr19	16368357	16368457	7343613	0	-	0.47	(0.45,0.485]	chr19	760668	60	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	486	2	8.0164	8.27308	8.52976	2.63728e-4	5.1986e-7	0.00919874	6.79442e-5
chr17	4839933	4840033	6671952	0	+	0.43	(0.419,0.45]	chr17	668609	59	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	500	2	8.09531	8.27252	8.44973	2.12215e-4	4.6985e-6	0.0082398	3.01296e-4
chr14	103105272	103105372	5921871	0	+	0.59	(0.58,1]	chr14	579220	2	SS5_PROX	SS5_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	1274	2	6.86136	8.268525	9.67569	1.04647e-6	1.59745e-8	8.39394e-4	7.06012e-6
chr2	121478821	121478921	1262514	0	-	0.56	(0.523,0.58]	chr2	136083	85	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	532	2	7.67735	8.268245	8.85914	3.50713e-5	5.65256e-6	0.00328321	3.44583e-4
chr2	3220441	3220541	1080305	0	-	0.45	(0.419,0.45]	chr2	117609	58	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000482570.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	516	2	7.71551	8.267199999999999	8.81889	8.42277e-4	5.1419e-7	0.0172456	6.74657e-5
chr5	1103405	1103505	2608885	0	-	0.48	(0.45,0.485]	chr5	259667	88	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	0	498	2	7.97302	8.267045	8.56107	8.6417e-5	3.15599e-6	0.00516347	2.27679e-4
chr18	79357857	79357956	7099864	0	+	0.636364	(0.58,1]	chr18	722963	93	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000426216.6:ENST00000307671.12:ENST00000490210.6:ENST00000590477.5:ENST00000589951.5:ENST00000588921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	460	2	8.23406	8.26604	8.29802	3.69132e-5	1.86914e-7	0.00335179	3.50352e-5
chr18	79146447	79146547	7097714	0	+	0.65	(0.58,1]	chr18	722822	22	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000586672.5:ENST00000590271.5:ENST00000490210.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	461	2	8.03613	8.265165	8.4942	5.94239e-5	9.02461e-8	0.00428256	2.20297e-5
chr19	2336814	2336914	7189489	0	+	0.62	(0.58,1]	chr19	731783	3	SS3_PROX	SS3_PROX:INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	957	2	7.21359	8.264705	9.31582	2.57746e-6	2.56071e-8	0.00111692	9.75193e-6
chr16	2164691	2164786	6372949	0	+	0.610526	(0.58,1]	chr16	629424	3	INTRON	INTRON	TRAF7	ENSG00000131653.13	ENST00000565383.5:ENST00000569686.5:ENST00000326181.11:ENST00000567653.5:ENST00000564067.5:ENST00000567645.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	1546	2	6.23273	8.261165	10.2896	1.22901e-5	9.52907e-11	0.00203716	4.00092e-7
chr2	238269374	238269474	1388927	0	-	0.51	(0.485,0.523]	chr2	148517	4	SS3_PROX	SS3_PROX:INTRON	PER2	ENSG00000132326.12	ENST00000254657.8:ENST00000355768.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	476	2	8.25921	8.261	8.26279	1.24205e-4	8.94736e-7	0.00618972	9.76396e-5
chr20	63732918	63733018	7509368	0	+	0.4	(0.39,0.419]	chr20	783516	3	SS3_PROX	SS3_PROX:INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	1156	2	7.71752	8.260245000000001	8.80297	8.24226e-5	4.7247e-8	0.00502717	1.45439e-5
chr20	44360541	44360640	7482513	0	+	0.474747	(0.45,0.485]	chr20	779618	43	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5	protein_coding	protein_coding	protein_coding	protein_coding	1	1052	2	7.08765	8.25989	9.43213	1.39355e-5	2.02456e-7	0.00218334	3.6561e-5
chr13	113538161	113538261	5658663	0	+	0.45	(0.419,0.45]	chr13	555722	30	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	488	2	8.11044	8.259795	8.40915	4.03555e-4	1.81336e-6	0.0114903	1.55823e-4
chr16	1739504	1739603	6371334	0	+	0.585859	(0.58,1]	chr16	628851	41	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	459	2	8.03613	8.259409999999999	8.48269	5.94239e-5	9.41998e-8	0.00428256	2.24672e-5
chr3	149540015	149540115	1940014	0	-	0.45	(0.419,0.45]	chr3	197467	4	SS5_PROX	SS5_PROX:INTRON	WWTR1	ENSG00000018408.15	ENST00000465804.5:ENST00000360632.8:ENST00000467467.5:ENST00000471586.5:ENST00000494754.1:ENST00000472417.1:ENST00000485244.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	517	2	7.84311	8.25906	8.67501	1.37884e-4	9.99564e-6	0.00651662	5.13591e-4
chr7	1070583	1070683	3526933	0	-	0.57	(0.523,0.58]	chr7	340585	154	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	476	2	8.18689	8.256155	8.32542	1.09393e-4	1.05609e-6	0.00583571	1.08085e-4
chr11	61271760	61271860	5041293	0	-	0.51	(0.485,0.523]	chr11	488754	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10:ENST00000535710.1:ENST00000398808.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	484	2	8.03256	8.253895	8.47523	7.86027e-5	1.91589e-6	0.00494046	1.61771e-4
chr2	135559054	135559153	900795	0	+	0.535354	(0.523,0.58]	chr2	101526	271	INTRON	INTRON	R3HDM1	ENSG00000048991.17	ENST00000483021.5:ENST00000463230.5:ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000438014.5:ENST00000488035.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	472	2	8.15266	8.253325	8.35399	1.57349e-4	6.0359e-7	0.00700666	7.52596e-5
chr11	65085852	65085945	4869636	0	+	0.451613	(0.45,0.485]	chr11	467665	6	EXON_MRNA	EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	ZFPL1	ENSG00000162300.13	ENST00000650243.1:ENST00000294258.8:ENST00000531761.5:ENST00000453524.6:ENST00000526289.5:ENST00000526334.5:ENST00000526440.1:ENST00000533216.1:ENST00000526945.5:ENST00000532200.1:ENST00000530488.1:ENST00000530744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	483	2	8.10003	8.253235	8.40644	1.1891e-4	2.0999e-6	0.00606093	1.72118e-4
chr16	1737239	1737338	6371311	0	+	0.59596	(0.58,1]	chr16	628851	18	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	462	2	7.89232	8.251065	8.60981	8.37496e-5	5.86047e-8	0.00507439	1.63767e-5
chr1	17675683	17675783	54968	0	+	0.56	(0.523,0.58]	chr1	5603	107	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	492	2	7.91802	8.250595	8.58317	6.33121e-5	2.57424e-6	0.00443374	1.97683e-4
chr7	139703943	139704043	3723185	0	-	0.51	(0.485,0.523]	chr7	357498	719	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	474	2	8.19006	8.249770000000002	8.30948	1.11699e-4	1.13906e-6	0.00589673	1.13397e-4
chr16	1737830	1737929	6371317	0	+	0.565657	(0.523,0.58]	chr16	628851	24	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	481	2	7.83962	8.246929999999999	8.65424	3.01864e-4	2.18813e-7	0.00987906	3.88464e-5
chr5	119531502	119531600	2518755	0	+	0.428571	(0.419,0.45]	chr5	250206	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HSD17B4	ENSG00000133835.18	ENST00000683936.1:ENST00000509514.6:ENST00000682996.1:ENST00000684214.1:ENST00000683974.1:ENST00000414835.7:ENST00000442060.7:ENST00000510025.7:ENST00000515320.5:ENST00000646058.1:ENST00000682445.1:ENST00000515235.6:ENST00000518349.6:ENST00000683371.1:ENST00000683390.1:ENST00000645832.1:ENST00000644146.1:ENST00000646355.1:ENST00000647335.1:ENST00000682531.1:ENST00000683265.1:ENST00000646554.1:ENST00000684160.1:ENST00000682626.1:ENST00000647342.1:ENST00000643250.1:ENST00000645099.1:ENST00000684131.1:ENST00000513628.5:ENST00000683549.1:ENST00000645702.1:ENST00000683996.1:ENST00000683372.1:ENST00000522415.5:ENST00000683335.1:ENST00000683476.1:ENST00000509951.5:ENST00000509606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	1085	2	7.22179	8.243765	9.26574	4.39265e-5	2.84545e-7	0.00367146	4.5643e-5
chr3	13374073	13374173	1692589	0	-	0.5	(0.485,0.523]	chr3	176729	2	SS3_PROX	SS3_PROX:INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000420141.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	469	2	8.12841	8.24241	8.35641	1.63536e-4	6.55004e-7	0.00716861	7.93487e-5
chr7	29203982	29204082	3334383	0	+	0.45	(0.419,0.45]	chr7	322843	56	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5:ENST00000222792.11:ENST00000409350.5:ENST00000409964.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	502	2	7.90842	8.242075	8.57573	1.66807e-4	8.22865e-6	0.00722822	4.47628e-4
chr2	239281677	239281777	1391525	0	-	0.46	(0.45,0.485]	chr2	148740	301	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	481	2	7.87611	8.241695	8.60728	3.50026e-4	4.03104e-7	0.0106878	5.75541e-5
chr17	55306444	55306544	6757528	0	+	0.4	(0.39,0.419]	chr17	681718	171	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	1326	2	7.03014	8.241	9.45186	3.5591e-5	5.37493e-8	0.0032982	1.56042e-5
chr9	131586359	131586457	4418980	0	-	0.55102	(0.523,0.58]	chr9	421909	14	INTRON	INTRON	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000372189.7:ENST00000683357.1:ENST00000372190.7	protein_coding	protein_coding	protein_coding	protein_coding	0	501	2	7.7893	8.238745	8.68819	5.05955e-5	3.92607e-6	0.00393085	2.66734e-4
chr21	43752017	43752117	7624137	0	+	0.6	(0.58,1]	chr21	796774	1	SS3_PROX	SS3_PROX:INTRON	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000498040.5:ENST00000481512.5:ENST00000490666.5:ENST00000467908.1:ENST00000343528.10:ENST00000398078.7:ENST00000468392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	479	2	7.82879	8.2376	8.64641	1.35228e-5	1.03852e-6	0.00213747	1.06938e-4
chr12	2960653	2960753	5157690	0	+	0.47	(0.45,0.485]	chr12	501257	3	SS5_PROX	SS5_PROX:INTRON	TEAD4	ENSG00000197905.10	ENST00000358409.7:ENST00000359864.8:ENST00000540314.2:ENST00000536826.2:ENST00000543035.6:ENST00000397122.6:ENST00000443986.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	472	2	8.00297	8.233785000000001	8.4646	2.70996e-4	6.43433e-7	0.00934214	7.8705e-5
chr16	29273412	29273512	6433571	0	+	0.4	(0.39,0.419]	chr16	636745	213	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	497	2	7.89282	8.23376	8.5747	1.29506e-4	7.08349e-6	0.00631574	4.04641e-4
chr18	13445729	13445827	7025033	0	+	0.5	(0.485,0.523]	chr18	717583	15	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000610087.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	1354	2	7.42428	8.232705000000001	9.04113	7.79464e-6	6.4785e-8	0.00169721	1.7549e-5
chr14	104872455	104872555	5925936	0	+	0.55	(0.523,0.58]	chr14	579942	35	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	1	1070	2	7.73068	8.232285000000001	8.73389	4.58823e-5	1.49648e-8	0.00373545	6.85919e-6
chr3	172091980	172092080	1627987	0	+	0.38	(0.36,0.39]	chr3	170535	447	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	484	2	8.03991	8.232205	8.4245	1.66762e-4	4.46374e-6	0.00722822	2.90119e-4
chr17	7174860	7174960	6847819	0	-	0.42	(0.419,0.45]	chr17	693456	4	SS3_PROX	SS3_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	2	1443	2	6.648	8.229295	9.81059	1.51001e-5	3.90573e-7	0.00223783	5.64502e-5
chr19	2440522	2440621	7309591	0	-	0.464646	(0.45,0.485]	chr19	753890	16	INTRON	INTRON	LMNB2	ENSG00000176619.13	ENST00000325327.4	protein_coding	protein_coding	protein_coding	protein_coding	0	476	2	8.05647	8.2289	8.40133	1.20167e-4	2.41552e-6	0.00607292	1.89569e-4
chr16	81678828	81678928	6510099	0	+	0.48	(0.45,0.485]	chr16	645978	2	SS5_PROX	SS5_PROX:INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	2	1737	2	6.61536	8.22862	9.84188	2.18593e-5	6.51746e-9	0.0027064	4.14614e-6
chr3	48933203	48933303	1465070	0	+	0.59	(0.58,1]	chr3	156612	50	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000452882.5:ENST00000498314.5:ENST00000474618.5:ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000420814.5:ENST00000486316.5:ENST00000474936.6:ENST00000484999.5:ENST00000470296.5:ENST00000463204.5:ENST00000452385.5:ENST00000495507.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	459	2	8.00003	8.227475	8.45492	2.15983e-5	5.581e-7	0.0027064	7.12027e-5
chr2	219572013	219572112	1036511	0	+	0.494949	(0.485,0.523]	chr2	112995	22	INTRON	INTRON	INHA	ENSG00000123999.5	ENST00000489456.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	543	2	7.48762	8.226005	8.96439	2.75513e-5	1.11881e-5	0.00296016	5.5674e-4
chr2	152490555	152490654	927017	0	+	0.434343	(0.419,0.45]	chr2	103058	1545	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	0	477	2	8.03444	8.22461	8.41478	4.6546e-4	1.78245e-6	0.0124572	1.54148e-4
chr9	123885017	123885117	4401444	0	-	0.55	(0.523,0.58]	chr9	419733	56	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	1	1450	2	7.6317	8.224440000000001	8.81718	5.01202e-6	1.256e-7	0.00135941	2.69399e-5
chr20	62957580	62957680	7508272	0	+	0.65	(0.58,1]	chr20	783178	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	3259	2	7.62677	8.22426	8.82175	5.77639e-8	8.41158e-10	3.02914e-4	1.17724e-6
chr18	69487127	69487227	7084044	0	+	0.43	(0.419,0.45]	chr18	722115	155	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	0	479	2	8.13678	8.224219999999999	8.31166	2.7594e-4	4.14623e-6	0.00944319	2.78092e-4
chr1	43560519	43560619	107044	0	+	0.63	(0.58,1]	chr1	13192	62	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	451	2	8.11631	8.2242	8.3320900000000009	2.91156e-5	3.64876e-7	0.00303934	5.39907e-5
chr6	159981288	159981388	3065387	0	+	0.49	(0.485,0.523]	chr6	297908	115	INTRON	INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	463	2	8.20122	8.22227	8.24332	1.40343e-4	9.54563e-7	0.00659877	1.01723e-4
chr17	72553633	72553733	6963847	0	-	0.54	(0.523,0.58]	chr17	710389	192	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	2	2730	2	7.42057	8.22195	9.02333	7.96669e-6	1.59375e-10	0.00170725	4.95675e-7
chr11	61272060	61272160	5041296	0	-	0.37	(0.36,0.39]	chr11	488755	3	SS3_PROX	SS3_PROX:INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10:ENST00000535710.1:ENST00000398808.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	1338	2	7.15996	8.219985000000001	9.28001	2.62425e-5	9.13904e-8	0.00292399	2.21719e-5
chr1	17676183	17676283	54973	0	+	0.58	(0.523,0.58]	chr1	5603	112	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	480	2	7.90151	8.219280000000001	8.53705	6.98464e-5	2.71794e-6	0.00468523	2.04763e-4
chr16	18844533	18844631	6560195	0	-	0.377551	(0.36,0.39]	chr16	654007	17	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000563448.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	471	2	8.19195	8.2183	8.24465	2.63267e-4	2.37778e-6	0.00919874	1.87483e-4
chr16	89914856	89914950	6526325	0	+	0.510638	(0.485,0.523]	chr16	647716	14	UTR5	UTR5:EXON_MRNA:INTRON	ENSG00000267048:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000539976.1:ENST00000555427.1:ENST00000639847.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	2	1466	2	7.41083	8.21665	9.02247	2.43031e-5	9.55771e-9	0.00283956	5.178e-6
chr16	29273012	29273112	6433567	0	+	0.53	(0.523,0.58]	chr16	636745	209	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	498	2	7.72506	8.21502	8.70498	4.88113e-5	4.84091e-6	0.00385082	3.08192e-4
chr19	35001139	35001191	7244868	0	+	0.596154	(0.58,1]	chr19	742060	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	522	2	7.46932	8.21442	8.95952	6.25046e-6	3.74461e-6	0.00152915	2.5891e-4
chr2	171699570	171699670	953440	0	+	0.55	(0.523,0.58]	chr2	104789	63	INTRON	INTRON	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000452242.5:ENST00000397119.8:ENST00000410079.7:ENST00000438879.5:ENST00000508530.5:ENST00000409197.5:ENST00000456808.5:ENST00000409317.5:ENST00000409773.5:ENST00000411953.5:ENST00000409453.5:ENST00000445378.5:ENST00000435234.5:ENST00000443458.5:ENST00000412370.5:ENST00000425485.5:ENST00000423910.5:ENST00000430778.5:ENST00000422646.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	477	2	7.90979	8.213985	8.51818	7.27072e-5	2.64492e-6	0.00477445	2.01088e-4
chr17	15465561	15465661	6860090	0	-	0.45	(0.419,0.45]	chr17	695067	121	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	475	2	7.96107	8.21278	8.46449	5.33958e-4	1.53118e-6	0.0134768	1.3934e-4
chr3	171700326	171700425	1957441	0	-	0.555556	(0.523,0.58]	chr3	199006	1	INTRON	INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9:ENST00000481505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	491	2	7.77123	8.21263	8.65403	5.44283e-5	4.16461e-6	0.00408776	2.78321e-4
chr2	239346682	239346782	1392177	0	-	0.46	(0.45,0.485]	chr2	148752	222	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	1232	2	6.59521	8.212105000000001	9.829	5.96469e-5	6.80783e-9	0.0042938	4.21173e-6
chr7	22137968	22138066	3547975	0	-	0.469388	(0.45,0.485]	chr7	342865	6	INTRON	INTRON	RAPGEF5	ENSG00000136237.19	ENST00000665637.1:ENST00000401957.6:ENST00000344041.10:ENST00000620335.4	protein_coding	protein_coding	protein_coding	protein_coding	0	534	2	7.50694	8.21001	8.91308	4.15411e-5	1.3731e-5	0.00357808	6.43436e-4
chr1	43560021	43560120	107039	0	+	0.555556	(0.523,0.58]	chr1	13192	57	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	1660	2	6.53753	8.209925	9.88232	2.01956e-5	3.1501e-9	0.00260173	2.60614e-6
chr19	8249229	8249329	7200376	0	+	0.5	(0.485,0.523]	chr19	734198	74	INTRON	INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	1007	2	6.94682	8.208785	9.47075	9.17801e-6	2.4267e-7	0.00182087	4.11671e-5
chr1	1223043	1223143	380417	0	-	0.59	(0.58,1]	chr1	42842	4	SS5_PROX	SS5_PROX:INTRON	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000403997.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	446	2	7.89986	8.208400000000001	8.51694	8.22613e-5	8.29089e-8	0.00502313	2.10336e-5
chr15	28653376	28653475	6068892	0	+	0.484848	(0.45,0.485]	chr15	596168	14	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	0	462	2	8.04944	8.208195	8.36695	2.46649e-4	8.8487e-7	0.00887696	9.69154e-5
chr15	22558789	22558888	6059862	0	+	0.50505	(0.485,0.523]	chr15	594971	13	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	458	2	8.15309	8.20794	8.26279	1.55282e-4	8.94736e-7	0.00693487	9.76396e-5
chr16	85374442	85374542	6516815	0	+	0.47	(0.45,0.485]	chr16	646391	151	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	513	2	7.62098	8.20717	8.79336	5.33389e-5	9.62e-6	0.00405722	4.98808e-4
chr15	22558390	22558489	6059858	0	+	0.494949	(0.485,0.523]	chr15	594971	9	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	459	2	7.99825	8.20693	8.41561	2.14694e-4	5.37429e-7	0.00828194	6.9537e-5
chr16	1737043	1737141	6371309	0	+	0.591837	(0.58,1]	chr16	628851	16	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	448	2	7.84622	8.206535	8.56685	9.34362e-5	6.88165e-8	0.00538091	1.84919e-5
chr12	7137691	7137772	5167705	0	+	0.54321	(0.523,0.58]	chr12	502870	2	SS3_PROX	SS3_PROX:INTRON	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000537408.1:ENST00000535668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	519	2	7.55598	8.205680000000001	8.85538	3.53554e-5	8.36731e-6	0.00328636	4.52433e-4
chr15	20442039	20442139	6202467	0	-	0.55	(0.523,0.58]	chr15	610287	10	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000424611.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	457	2	8.18293	8.20507	8.22721	1.47668e-4	9.231e-7	0.0067648	9.90613e-5
chr4	3362299	3362399	2005059	0	+	0.55	(0.523,0.58]	chr4	204663	189	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	456	2	8.07086	8.203265	8.33567	1.86729e-4	6.419e-7	0.00769604	7.85747e-5
chr16	75236158	75236244	6644469	0	-	0.581395	(0.58,1]	chr16	664410	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000566982.1:ENST00000563038.5:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10:ENST00000569340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	440	2	8.04296	8.2026	8.36224	5.84601e-5	1.47371e-7	0.0042453	2.97839e-5
chr19	2204262	2204360	7188901	0	+	0.479592	(0.45,0.485]	chr19	731581	11	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	0	474	2	7.93344	8.202355	8.47127	1.04038e-4	3.58138e-6	0.00569005	2.51034e-4
chr20	8180958	8181058	7427069	0	+	0.51	(0.485,0.523]	chr20	773674	302	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	1239	2	7.1178	8.201925	9.28605	1.52505e-5	2.8002e-8	0.00223783	1.02682e-5
chr16	81544781	81544881	6508741	0	+	0.52	(0.485,0.523]	chr16	645911	489	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	1226	2	7.05973	8.200890000000001	9.34205	1.73117e-5	2.30992e-8	0.00238872	9.06405e-6
chr17	7175644	7175742	6847827	0	-	0.469388	(0.45,0.485]	chr17	693457	8	INTRON	INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	2	2665	2	7.88485	8.200405	8.51596	3.85784e-6	1.62762e-9	0.00122559	1.81028e-6
chr9	137780610	137780708	4266115	0	+	0.561224	(0.523,0.58]	chr9	407438	5	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	463	2	7.832	8.199965	8.56793	3.0665e-4	2.93262e-7	0.00996904	4.65962e-5
chr8	38768894	38768994	3802244	0	+	0.49	(0.485,0.523]	chr8	365828	111	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	1200	2	6.88522	8.19983	9.51444	2.53189e-5	1.2755e-8	0.00287899	6.22717e-6
chr10	35335827	35335927	4673270	0	-	0.54	(0.523,0.58]	chr10	445750	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CCNY-AS1	ENSG00000271335.6	ENST00000659251.1:ENST00000605499.1	lncRNA	lncRNA	lncRNA	lncRNA	0	471	2	7.90979	8.199595	8.4894	7.7293e-5	2.64492e-6	0.00490778	2.01088e-4
chr17	43545115	43545215	6739016	0	+	0.55	(0.523,0.58]	chr17	678632	3	SS5_PROX	SS5_PROX:INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	1694	2	6.70485	8.196925	9.689	1.4011e-5	6.18569e-9	0.00218388	3.96512e-6
chr1	22502641	22502741	59915	0	+	0.56	(0.523,0.58]	chr1	6195	2	SS5_PROX	SS5_PROX:INTRON	ZBTB40	ENSG00000184677.18	ENST00000650433.1:ENST00000404138.5:ENST00000374651.8:ENST00000375647.5:ENST00000400239.6	protein_coding	protein_coding	protein_coding	protein_coding	0	455	2	8.18006	8.196314999999998	8.21257	1.38752e-4	1.08043e-6	0.00653779	1.09706e-4
chr19	35003125	35003225	7244891	0	+	0.49	(0.485,0.523]	chr19	742072	3	SS5_PROX	SS5_PROX:INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	1094	2	6.50027	8.19584	9.89141	3.65341e-6	1.09621e-6	0.00121739	1.10906e-4
chr2	111474863	111474962	1253391	0	-	0.535354	(0.523,0.58]	chr2	134923	24	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1:ENST00000673878.1:ENST00000439494.1	lncRNA	lncRNA	lncRNA	lncRNA	0	457	2	8.10992	8.195625	8.28133	1.20056e-4	1.36459e-6	0.00607292	1.28648e-4
chr2	239277979	239278079	1391488	0	-	0.66	(0.58,1]	chr2	148740	264	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	444	2	8.04767	8.19543	8.34319	2.83415e-5	4.69055e-7	0.00300073	6.3683e-5
chr2	3220940	3221040	1080310	0	-	0.48	(0.45,0.485]	chr2	117609	63	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000482570.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	495	2	7.51844	8.19365	8.86886	7.1335e-4	1.70033e-7	0.0157644	3.2675900000000003e-05
chr6	15300744	15300844	2857054	0	+	0.51	(0.485,0.523]	chr6	279178	514	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	0	455	2	8.15574	8.193125	8.23051	1.31951e-4	1.27613e-6	0.00637826	1.23031e-4
chr6	31735561	31735661	3119441	0	-	0.53	(0.523,0.58]	chr6	303332	9	INTRON	INTRON	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000616760.1:ENST00000375784.8	protein_coding	protein_coding	protein_coding	protein_coding	0	454	2	8.16631	8.19237	8.21843	1.37054e-4	1.13113e-6	0.00649687	1.12814e-4
chr7	47363184	47363284	3587423	0	-	0.41	(0.39,0.419]	chr7	346030	165	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	463	2	8.03585	8.192115000000001	8.34838	3.70936e-4	1.75021e-6	0.0110707	1.52143e-4
chr13	113058196	113058296	5656219	0	+	0.57	(0.523,0.58]	chr13	555189	34	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	469	2	7.89318	8.19129	8.4894	7.7293e-5	2.79337e-6	0.00490778	2.08969e-4
chr1	950054	950150	379861	0	-	0.541667	(0.523,0.58]	chr1	42700	11	INTRON	INTRON	NOC2L	ENSG00000188976.11	ENST00000327044.7:ENST00000477976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	457	2	7.87713	8.19043	8.50373	2.79345e-4	3.64411e-7	0.00949286	5.39907e-5
chr7	55067739	55067839	3372033	0	+	0.42	(0.419,0.45]	chr7	325289	238	INTRON	INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000463948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	489	2	7.80931	8.19028	8.57125	1.68242e-4	1.10512e-5	0.00725614	5.52474e-4
chr1	227767718	227767806	357650	0	+	0.5	(0.485,0.523]	chr1	40319	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	SNAP47	ENSG00000143740.15	ENST00000681827.1:ENST00000679575.1:ENST00000680854.1:ENST00000681006.1:ENST00000366760.5:ENST00000681447.1:ENST00000680992.1:ENST00000680695.1:ENST00000366759.9:ENST00000315781.10:ENST00000681685.1:ENST00000681678.1:ENST00000681242.1:ENST00000681149.1:ENST00000418653.6:ENST00000617596.5:ENST00000681929.1:ENST00000478768.3:ENST00000426344.6:ENST00000680202.1:ENST00000679561.1:ENST00000681465.1:ENST00000491439.2:ENST00000681554.1:ENST00000681252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	451	2	8.10962	8.186205000000001	8.26279	1.70107e-4	8.94736e-7	0.00729818	9.76396e-5
chr16	81627090	81627190	6509568	0	+	0.48	(0.45,0.485]	chr16	645926	50	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	1	1017	2	6.83409	8.183895	9.5337	1.12385e-5	4.69774e-7	0.00197105	6.37291e-5
chr15	22964307	22964407	6204155	0	-	0.55	(0.523,0.58]	chr15	610573	159	INTRON	INTRON	CYFIP1	ENSG00000273749.5	ENST00000617928.5:ENST00000610365.4:ENST00000613006.4:ENST00000611832.4:ENST00000619037.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	453	2	8.10272	8.183585	8.26445	1.24404e-4	1.39766e-6	0.00618972	1.30915e-4
chr1	45586181	45586279	115550	0	+	0.602041	(0.58,1]	chr1	14451	16	INTRON	INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000530840.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7:ENST00000629893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	487	2	7.57065	8.18098	8.79131	9.46989e-6	2.61676e-6	0.00184506	1.99489e-4
chr3	138748169	138748269	1927525	0	-	0.43	(0.419,0.45]	chr3	195937	50	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000462898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	535	2	7.46314	8.180915	8.89869	8.95974e-5	3.05349e-5	0.00524798	0.00114367
chr13	113056800	113056900	5656205	0	+	0.56	(0.523,0.58]	chr13	555189	20	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	470	2	7.8335	8.18057	8.52764	7.1258e-5	3.3976e-6	0.00472657	2.40562e-4
chr11	70741185	70741285	5061693	0	-	0.44	(0.419,0.45]	chr11	492701	233	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	476	2	7.90041	8.17993	8.45945	2.08318e-4	8.42749e-6	0.00813372	4.54808e-4
chrX	48465320	48465417	8040341	0	-	0.494845	(0.485,0.523]	chrX	838611	20	INTRON	INTRON	SLC38A5	ENSG00000017483.16	ENST00000595796.5:ENST00000619100.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5:ENST00000416711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	487	2	7.49867	8.17992	8.86117	5.99913e-4	1.19583e-7	0.0143535	2.61165e-5
chr15	28216698	28216797	6207138	0	-	0.50505	(0.485,0.523]	chr15	611111	5	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	0	449	2	8.13462	8.179095	8.22357	1.6142e-4	1.01923e-6	0.00712539	1.0586e-4
chr2	239282776	239282876	1391536	0	-	0.44	(0.419,0.45]	chr2	148740	312	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	483	2	7.64911	8.178865	8.70862	9.51747e-4	7.23045e-7	0.0184489	8.4681e-5
chr20	34073262	34073362	7460405	0	+	0.47	(0.45,0.485]	chr20	776608	3	SS3_PROX	SS3_PROX:INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000413297.5:ENST00000246194.8:ENST00000333552.9:ENST00000442805.1:ENST00000493399.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	1002	2	7.36684	8.17841	8.98998	3.5364e-5	7.96297e-8	0.00328636	2.05115e-5
chr2	65422065	65422165	1172076	0	-	0.45	(0.419,0.45]	chr2	127582	415	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	0	469	2	7.9861	8.177810000000001	8.36952	2.4723e-4	6.52302e-6	0.00888713	3.81713e-4
chr17	672102	672202	6823910	0	-	0.48	(0.45,0.485]	chr17	689839	9	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000679680.1:ENST00000576019.6:ENST00000679961.1:ENST00000681120.1:ENST00000575207.6:ENST00000680660.1:ENST00000680970.1:ENST00000680241.1:ENST00000681423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	452	2	8.13812	8.177435	8.21675	2.05976e-4	1.44086e-6	0.00809983	1.33252e-4
chr1	227767347	227767442	357646	0	+	0.484211	(0.45,0.485]	chr1	40317	5	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	SNAP47	ENSG00000143740.15	ENST00000681827.1:ENST00000679575.1:ENST00000680854.1:ENST00000681006.1:ENST00000366760.5:ENST00000681447.1:ENST00000680992.1:ENST00000680695.1:ENST00000366759.9:ENST00000315781.10:ENST00000681685.1:ENST00000681678.1:ENST00000681242.1:ENST00000681149.1:ENST00000418653.6:ENST00000617596.5:ENST00000681929.1:ENST00000478768.3:ENST00000426344.6:ENST00000680202.1:ENST00000679561.1:ENST00000681465.1:ENST00000491439.2:ENST00000681554.1:ENST00000681252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	457	2	7.85384	8.175695000000001	8.49755	3.66048e-4	5.77697e-7	0.0109836	7.27846e-5
chr10	127260625	127260725	4610533	0	+	0.55	(0.523,0.58]	chr10	440799	28	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2:ENST00000484400.5:ENST00000464466.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	463	2	7.69589	8.175065	8.65424	4.0569e-4	2.18813e-7	0.0115298	3.88464e-5
chr17	48845349	48845441	6749510	0	+	0.413043	(0.39,0.419]	chr17	680146	10	INTRON	INTRON	CALCOCO2	ENSG00000136436.15	ENST00000503463.5:ENST00000509507.5:ENST00000448105.6:ENST00000258947.8:ENST00000508679.5:ENST00000416445.6:ENST00000513119.5:ENST00000509415.5:ENST00000570513.5:ENST00000575560.5:ENST00000576582.5:ENST00000505071.5:ENST00000507076.1:ENST00000502761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	463	2	8.02459	8.174769999999999	8.32495	2.11499e-4	4.74231e-6	0.00821914	3.03873e-4
chr1	17675783	17675883	54969	0	+	0.58	(0.523,0.58]	chr1	5603	108	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	461	2	7.89318	8.17165	8.45012	8.40154e-5	2.79337e-6	0.00507439	2.08969e-4
chr2	239084542	239084642	1389520	0	-	0.57	(0.523,0.58]	chr2	148604	3	SS3_PROX	SS3_PROX:INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000487617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	450	2	8.06614	8.170935	8.27573	1.21483e-4	1.57808e-6	0.00611516	1.41652e-4
chr5	1465674	1465769	2609380	0	-	0.463158	(0.45,0.485]	chr5	259790	15	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000503252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	562	2	7.2605	8.169789999999999	9.07908	2.93349e-5	2.93313e-5	0.00304796	0.00110673
chr21	43726755	43726853	7623861	0	+	0.510204	(0.485,0.523]	chr21	796696	30	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000438837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	451	2	8.04011	8.169285	8.29846	1.1433e-4	1.86893e-6	0.00596205	1.59168e-4
chr1	8757834	8757934	395135	0	-	0.36	(0.33,0.36]	chr1	45073	41	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	0	462	2	7.94415	8.169055	8.39396	1.30581e-4	4.67037e-6	0.00633355	3.0041e-4
chr17	57467503	57467602	6761887	0	+	0.474747	(0.45,0.485]	chr17	682137	224	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	449	2	8.06245	8.168685	8.27492	2.40226e-4	1.19337e-6	0.00875172	1.17e-4
chr6	1737679	1737779	3080248	0	-	0.44	(0.419,0.45]	chr6	299476	108	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	458	2	8.0148	8.168375	8.32195	4.82909e-4	2.36549e-6	0.0127255	1.8704e-4
chr9	127549359	127549459	4411997	0	-	0.55	(0.523,0.58]	chr9	420485	172	INTRON	INTRON	NIBAN2	ENSG00000136830.12	ENST00000373314.7:ENST00000373312.4:ENST00000478917.1:ENST00000468379.1:ENST00000484348.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	456	2	7.94244	8.16837	8.3943	9.45666e-5	2.37532e-6	0.00542848	1.87465e-4
chr8	38447083	38447182	3968094	0	-	0.515152	(0.485,0.523]	chr8	379315	32	INTRON	INTRON	FGFR1	ENSG00000077782.22	ENST00000649678.1:ENST00000397091.9:ENST00000619564.3:ENST00000447712.7:ENST00000341462.9:ENST00000532791.5:ENST00000674380.1:ENST00000674189.1:ENST00000683765.1:ENST00000425967.8:ENST00000683948.1:ENST00000397113.6:ENST00000356207.9:ENST00000335922.9:ENST00000683815.1:ENST00000684654.1:ENST00000326324.10:ENST00000674474.1:ENST00000397103.5:ENST00000397108.8:ENST00000487647.5:ENST00000530701.1:ENST00000470826.5:ENST00000683276.1:ENST00000683795.1:ENST00000496296.5:ENST00000527203.5:ENST00000533668.5:ENST00000525001.5:ENST00000526742.5:ENST00000529552.5:ENST00000484370.5:ENST00000530568.5:ENST00000434187.5:ENST00000397090.4:ENST00000413133.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	520	2	7.24681	8.16618	9.08555	9.94865e-4	5.56622e-8	0.0189547	1.58177e-5
chr17	7175840	7175937	6847829	0	-	0.494845	(0.485,0.523]	chr17	693457	10	INTRON	INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	2	2524	2	7.86477	8.165865	8.46696	2.95584e-6	1.26862e-9	0.00112869	1.53374e-6
chr2	219571915	219572013	1036510	0	+	0.530612	(0.523,0.58]	chr2	112995	21	INTRON	INTRON	INHA	ENSG00000123999.5	ENST00000489456.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	567	2	7.21206	8.165605	9.11915	2.49617e-5	2.00193e-5	0.00259401	9.86867e-4
chr7	139704243	139704343	3723188	0	-	0.53	(0.523,0.58]	chr7	357498	722	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	444	2	8.03148	8.164895000000001	8.29831	2.02723e-4	7.27602e-7	0.00805364	8.49186e-5
chr7	222845	222945	3305883	0	+	0.54	(0.523,0.58]	chr7	320161	135	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	1164	2	6.60818	8.164055	9.71993	4.66808e-5	5.5533e-9	0.00377289	3.70101e-6
chr8	22370135	22370234	3770049	0	+	0.484848	(0.45,0.485]	chr8	362721	20	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	3	1576	2	6.51771	8.16249	9.80727	6.28493e-6	1.24253e-7	0.00152915	2.68223e-5
chr2	239282376	239282476	1391532	0	-	0.44	(0.419,0.45]	chr2	148740	308	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	482	2	7.58839	8.162125	8.73586	0.00106381	6.64717e-7	0.0196024	8.02564e-5
chr17	16161238	16161336	6863300	0	-	0.438776	(0.419,0.45]	chr17	695515	20	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000395848.5:ENST00000411510.5:ENST00000582357.5:ENST00000436828.5:ENST00000460276.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	475	2	7.82631	8.162	8.49769	1.93656e-4	1.05073e-5	0.00784372	5.33293e-4
chr2	239282076	239282176	1391529	0	-	0.45	(0.419,0.45]	chr2	148740	305	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	464	2	7.78673	8.160060000000001	8.53339	7.38434e-4	1.23977e-6	0.0160522	1.20704e-4
chr13	50573897	50573997	5598364	0	+	0.38	(0.36,0.39]	chr13	551685	402	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1:ENST00000484869.6	lncRNA	lncRNA	lncRNA	lncRNA	0	454	2	8.09035	8.158545	8.22674	2.45952e-4	3.82438e-6	0.00885904	2.62442e-4
chr21	43904019	43904119	7624819	0	+	0.58	(0.523,0.58]	chr21	796893	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6	protein_coding	protein_coding	protein_coding	protein_coding	0	443	2	8.14542	8.158159999999999	8.1709	1.51444e-4	1.21262e-6	0.00686721	1.18611e-4
chr3	33088322	33088422	1733038	0	-	0.4	(0.39,0.419]	chr3	179306	107	INTRON	INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	456	2	7.85514	8.155905	8.45667	5.25022e-4	1.25015e-6	0.0133335	1.21293e-4
chr2	233165123	233165223	1058277	0	+	0.46	(0.45,0.485]	chr2	115120	3	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493078.1:ENST00000472517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	445	2	8.03632	8.155619999999999	8.27492	2.533e-4	1.19337e-6	0.00901269	1.17e-4
chr2	239280877	239280977	1391517	0	-	0.44	(0.419,0.45]	chr2	148740	293	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	486	2	7.525	8.154755	8.78451	0.00119436	5.71915e-7	0.020937	7.24911e-5
chrX	48818912	48819001	7879401	0	+	0.550562	(0.523,0.58]	chrX	826248	1	INTRON	INTRON	HDAC6	ENSG00000094631.21	ENST00000376619.6:ENST00000477528.5:ENST00000334136.11:ENST00000643659.1:ENST00000643374.1:ENST00000644068.1:ENST00000643934.1:ENST00000647398.1:ENST00000486227.5:ENST00000645643.1:ENST00000486665.5:ENST00000470942.1:ENST00000480525.5:ENST00000498808.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	441	2	8.00461	8.15461	8.30461	2.14394e-4	7.1241e-7	0.0082811	8.36689e-5
chr8	70342761	70342861	3994642	0	-	0.39	(0.36,0.39]	chr8	382245	456	INTRON	INTRON	NCOA2	ENSG00000140396.13	ENST00000452400.7:ENST00000518287.6:ENST00000520416.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	450	2	8.08225	8.153845	8.22544	3.26046e-4	2.5232e-6	0.0102853	1.94743e-4
chr22	25726913	25727012	7703403	0	+	0.535354	(0.523,0.58]	chr22	806116	46	UTR3	UTR3:EXON_MRNA	GRK3	ENSG00000100077.16	ENST00000324198.11	protein_coding	protein_coding	protein_coding	protein_coding	0	442	2	8.12423	8.153580000000002	8.18293	1.47668e-4	1.30122e-6	0.0067648	1.24734e-4
chr16	1736747	1736846	6371306	0	+	0.616162	(0.58,1]	chr16	628851	13	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	427	2	7.90736	8.1534	8.39944	8.08063e-5	1.28376e-7	0.00498873	2.73608e-5
chr20	5106087	5106187	7519050	0	-	0.46	(0.45,0.485]	chr20	784932	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TMEM230	ENSG00000089063.15	ENST00000615008.4:ENST00000612323.4:ENST00000202834.11:ENST00000379283.6:ENST00000379279.6:ENST00000379299.6:ENST00000379286.6:ENST00000492419.1:ENST00000379277.6:ENST00000342308.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	454	2	7.93344	8.15186	8.37028	1.2809e-4	3.58138e-6	0.00627073	2.51034e-4
chr21	46403674	46403773	7633016	0	+	0.59596	(0.58,1]	chr21	798231	8	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5	protein_coding	protein_coding	protein_coding	protein_coding	0	429	2	7.7986	8.1464	8.4942	1.0459e-4	9.02461e-8	0.00570277	2.20297e-5
chr16	1734884	1734984	6371287	0	+	0.58	(0.523,0.58]	chr16	628848	5	PRIMIRNA	PRIMIRNA:INTRON	MAPK8IP3:MIR3177	ENSG00000138834.15:ENSG00000265820.1	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1:ENST00000578255.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:processed_transcript:primary_miRNA	0	449	2	7.91802	8.145735	8.37345	9.88321e-5	2.57424e-6	0.00555761	1.97683e-4
chr20	36858176	36858275	7557083	0	-	0.474747	(0.45,0.485]	chr20	789155	184	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	0	444	2	7.91248	8.14563	8.37878	3.25318e-4	8.51401e-7	0.010266	9.45696e-5
chr8	18684220	18684320	3948811	0	-	0.45	(0.419,0.45]	chr8	377204	2	INTRON	INTRON	PSD3	ENSG00000156011.18	ENST00000327040.13:ENST00000440756.4:ENST00000286485.12:ENST00000523619.5:ENST00000518315.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	493	2	7.60779	8.14556	8.68333	1.35698e-4	2.00245e-5	0.00646561	8.4139e-4
chr13	98337510	98337609	5635619	0	+	0.40404	(0.39,0.419]	chr13	553508	33	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5:ENST00000601361.1:ENST00000595817.5:ENST00000595380.5:ENST00000596467.5:ENST00000600032.5:ENST00000601853.5:ENST00000596613.5:ENST00000598346.5:ENST00000602171.5:ENST00000602272.5:ENST00000601133.5:ENST00000599040.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	477	2	7.71143	8.14531	8.57919	1.28364e-4	1.22474e-5	0.00628067	5.92597e-4
chr9	34202553	34202653	4140961	0	+	0.48	(0.45,0.485]	chr9	393819	108	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2	protein_coding	protein_coding	protein_coding	protein_coding	0	459	2	7.83375	8.145154999999999	8.45656	1.07242e-4	4.9183e-6	0.00578018	3.11937e-4
chr19	8240563	8240663	7200287	0	+	0.47	(0.45,0.485]	chr19	734190	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559490.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	470	2	7.71736	8.143785	8.57021	8.47981e-5	7.10655e-6	0.00511795	4.04994e-4
chr18	13262245	13262345	7023183	0	+	0.6	(0.58,1]	chr18	717514	429	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000590371.5:ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000590115.1:ENST00000677055.1:ENST00000399848.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	423	2	8.14167	8.143735	8.1458	4.61244e-5	3.27469e-7	0.00374349	5.02249e-5
chr20	49149287	49149386	7572609	0	-	0.474747	(0.45,0.485]	chr20	791289	130	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	1	1177	2	6.80409	8.142994999999999	9.4819	3.84422e-5	2.19502e-8	0.00344738	8.73566e-6
chr11	62714012	62714111	5045883	0	-	0.484848	(0.45,0.485]	chr11	489786	15	UTR3	UTR3:EXON_MRNA:INTRON	HNRNPUL2-BSCL2:HNRNPUL2	ENSG00000234857.2:ENSG00000214753.4	ENST00000403734.2:ENST00000301785.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	442	2	8.12132	8.141905000000001	8.16249	1.96e-4	1.96074e-6	0.00788139	1.64238e-4
chr13	113057598	113057698	5656213	0	+	0.51	(0.485,0.523]	chr13	555189	28	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	457	2	7.80351	8.141815	8.48012	7.77903e-5	4.05085e-6	0.00492182	2.73332e-4
chr12	132951359	132951459	5542045	0	-	0.42	(0.419,0.45]	chr12	547064	27	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	456	2	7.77121	8.1366	8.50199	7.59955e-4	1.36503e-6	0.0162896	1.28648e-4
chr9	87537571	87537671	4175825	0	+	0.42	(0.419,0.45]	chr9	397141	122	INTRON	INTRON	DAPK1	ENSG00000196730.13	ENST00000358077.9:ENST00000469640.6:ENST00000472284.5:ENST00000469067.5:ENST00000408954.8:ENST00000622514.4:ENST00000496522.5:ENST00000472344.1:ENST00000491893.5:ENST00000489291.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	459	2	7.7236	8.136215	8.54883	8.29805e-4	1.18239e-6	0.0171232	1.16536e-4
chr8	25239278	25239378	3774631	0	+	0.46	(0.45,0.485]	chr8	363466	540	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000410074.5:ENST00000481100.5	protein_coding	protein_coding	protein_coding	protein_coding	0	475	2	7.64078	8.134500000000001	8.62822	7.51931e-5	9.04119e-6	0.00484351	4.78548e-4
chr20	62960003	62960103	7508297	0	+	0.55	(0.523,0.58]	chr20	783181	1	SS3_PROX	SS3_PROX:INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	1001	2	6.59772	8.13358	9.66944	6.0468e-6	7.37646e-7	0.00149871	8.56741e-5
chr16	85589829	85589929	6518971	0	+	0.41	(0.39,0.419]	chr16	646396	331	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	454	2	7.73957	8.132954999999999	8.52634	6.54536e-4	1.00607e-6	0.0150543	1.05275e-4
chr15	22558290	22558390	6059857	0	+	0.55	(0.523,0.58]	chr15	594971	8	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	435	2	8.13132	8.132755	8.13419	1.63559e-4	1.27085e-6	0.00716861	1.23017e-4
chr2	231046281	231046381	1047587	0	+	0.39	(0.36,0.39]	chr2	114051	45	INTRON	INTRON	C2orf72	ENSG00000204128.6	ENST00000373640.5:ENST00000477463.1:ENST00000463834.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	1274	2	7.12659	8.131555	9.13652	2.80839e-5	1.44404e-7	0.00299119	2.94679e-5
chr12	109964633	109964731	5495531	0	-	0.520408	(0.485,0.523]	chr12	540752	26	INTRON	INTRON	GIT2	ENSG00000139436.22	ENST00000355312.8:ENST00000361006.9:ENST00000457474.6:ENST00000553118.5:ENST00000551209.5:ENST00000550186.5:ENST00000547815.5:ENST00000320063.10:ENST00000551455.5:ENST00000551721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	440	2	7.98645	8.131305000000001	8.27616	1.19842e-4	2.22925e-6	0.00607292	1.79824e-4
chr10	103702107	103702207	4757121	0	-	0.45	(0.419,0.45]	chr10	454791	86	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	453	2	7.95553	8.13091	8.30629	2.78768e-4	7.14826e-6	0.00949286	4.07092e-4
chr2	42711756	42711855	776904	0	+	0.434343	(0.419,0.45]	chr2	89176	23	INTRON	INTRON	MTA3	ENSG00000057935.14	ENST00000405592.5:ENST00000406652.5:ENST00000405094.2:ENST00000409019.5:ENST00000467925.5:ENST00000478602.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	465	2	7.79211	8.130605	8.4691	2.04516e-4	1.16296e-5	0.00807449	5.71933e-4
chr16	23389286	23389386	6567868	0	-	0.45	(0.419,0.45]	chr16	655260	2	SS3_PROX	SS3_PROX:INTRON	COG7	ENSG00000168434.13	ENST00000307149.10:ENST00000566364.1:ENST00000561854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	459	2	7.85972	8.12992	8.40012	2.33249e-4	9.51388e-6	0.00863036	4.9668e-4
chr9	131587235	131587335	4418989	0	-	0.5	(0.485,0.523]	chr9	421910	1	SS5_PROX	SS5_PROX:INTRON	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000372189.7:ENST00000683357.1:ENST00000372190.7	protein_coding	protein_coding	protein_coding	protein_coding	0	474	2	7.60417	8.129315	8.65446	5.36298e-5	7.70941e-6	0.00405853	4.27315e-4
chr22	32671258	32671358	7791371	0	-	0.52	(0.485,0.523]	chr22	817442	410	INTRON	INTRON	SYN3	ENSG00000185666.15	ENST00000358763.7:ENST00000462268.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	464	2	7.49867	8.129199999999999	8.75973	5.99913e-4	1.68702e-7	0.0143535	3.25988e-5
chr5	651295	651394	2378795	0	+	0.535354	(0.523,0.58]	chr5	237646	30	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	433	2	7.98413	8.128495000000001	8.27286	2.2373e-4	7.92369e-7	0.00845454	9.00983e-5
chr1	27489385	27489485	431245	0	-	0.52	(0.485,0.523]	chr1	50973	601	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	0	439	2	7.98645	8.12849	8.27053	1.21273e-4	2.22925e-6	0.00611152	1.79824e-4
chr11	121478842	121478942	4953921	0	+	0.53	(0.523,0.58]	chr11	478664	2	INTRON	INTRON	SORL1	ENSG00000137642.13	ENST00000260197.12:ENST00000532451.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	1420	2	7.65083	8.127465	8.6041	4.80564e-6	2.59423e-7	0.00133542	4.29675e-5
chr2	216167543	216167643	1023893	0	+	0.41	(0.39,0.419]	chr2	111645	51	INTRON	INTRON	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	442	2	8.03585	8.127125	8.2184	3.70936e-4	2.61595e-6	0.0110707	1.99489e-4
chr7	74496107	74496207	3391788	0	+	0.46	(0.45,0.485]	chr7	327343	416	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	0	436	2	8.00297	8.126165	8.24936	2.70996e-4	1.29649e-6	0.00934214	1.24494e-4
chr1	43560120	43560220	107040	0	+	0.52	(0.485,0.523]	chr1	13192	58	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	1570	2	6.47334	8.12592	9.7785	2.29459e-5	5.1168e-9	0.00276344	3.56575e-6
chr6	87575179	87575279	3197996	0	-	0.45	(0.419,0.45]	chr6	310332	52	INTRON	INTRON	RARS2	ENSG00000146282.19	ENST00000691533.1:ENST00000493269.2:ENST00000685069.1:ENST00000691725.1:ENST00000369536.10:ENST00000693431.1:ENST00000685408.1:ENST00000693327.1:ENST00000691205.1:ENST00000689174.1:ENST00000692684.1:ENST00000686988.1:ENST00000690622.1:ENST00000689206.1:ENST00000688532.1:ENST00000686154.1:ENST00000686407.1:ENST00000685701.1:ENST00000689561.1:ENST00000691238.1:ENST00000685336.1:ENST00000686284.1:ENST00000687586.1:ENST00000685376.1:ENST00000685881.1:ENST00000691815.1:ENST00000687090.1:ENST00000451155.2:ENST00000687437.1:ENST00000692394.1:ENST00000687729.1:ENST00000693605.1:ENST00000687909.1:ENST00000688391.1:ENST00000690884.1:ENST00000692843.1:ENST00000684790.1:ENST00000692270.1:ENST00000685219.1:ENST00000689952.1:ENST00000687579.1:ENST00000686857.1:ENST00000690205.1:ENST00000690705.1:ENST00000686142.1:ENST00000688106.1:ENST00000686196.1:ENST00000687078.1:ENST00000690555.1:ENST00000693524.1:ENST00000691259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	456	2	7.6992	8.124015	8.54883	8.67988e-4	1.18239e-6	0.0175702	1.16536e-4
chr8	13208666	13208766	3940594	0	-	0.35	(0.33,0.36]	chr8	376715	753	INTRON	INTRON	DLC1	ENSG00000164741.15	ENST00000276297.9:ENST00000512044.6:ENST00000509922.5:ENST00000503161.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	1272	2	7.24383	8.12349	9.00315	1.62331e-5	1.60344e-7	0.00232287	3.1496e-5
chr3	132668134	132668232	1571856	0	+	0.397959	(0.39,0.419]	chr3	166594	10	EXON_MRNA	EXON_MRNA:INTRON	UBA5	ENSG00000081307.15	ENST00000264991.8:ENST00000493720.6:ENST00000683741.1:ENST00000468022.5:ENST00000356232.10:ENST00000473651.5:ENST00000494238.6:ENST00000505777.5:ENST00000464068.5:ENST00000489361.1:ENST00000468227.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	442	2	7.93437	8.123395	8.31242	4.51015e-4	1.95646e-6	0.0121988	1.64003e-4
chrX	316149	316237	7964857	0	-	0.477273	(0.45,0.485]	chrX	834136	5	INTRON	INTRON	GTPBP6	ENSG00000178605.13	ENST00000326153.9	protein_coding	protein_coding	protein_coding	protein_coding	0	436	2	7.91965	8.12219	8.32473	3.20655e-4	1.01515e-6	0.0102165	1.05816e-4
chr10	132755272	132755372	4619025	0	+	0.52	(0.485,0.523]	chr10	441201	14	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	0	437	2	7.79372	8.12186	8.45	3.28131e-4	4.7898e-7	0.010311	6.43542e-5
chr13	112912816	112912916	5654744	0	+	0.48	(0.45,0.485]	chr13	555099	23	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000442625.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	471	2	7.62098	8.120215	8.61945	7.65739e-5	9.62e-6	0.00489022	4.98808e-4
chr16	81614913	81615012	6509445	0	+	0.444444	(0.419,0.45]	chr16	645921	40	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	447	2	7.99365	8.11972	8.24579	3.12617e-4	6.37722e-6	0.0100453	3.74355e-4
chr11	61272798	61272898	5041304	0	-	0.46	(0.45,0.485]	chr11	488757	2	SS5_PROX	SS5_PROX:INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10:ENST00000535710.1:ENST00000398808.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	455	2	7.76325	8.119695	8.47614	1.02998e-4	6.14862e-6	0.0056665	3.6476e-4
chr16	1736649	1736747	6371305	0	+	0.642857	(0.58,1]	chr16	628851	12	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	416	2	7.91482	8.119435	8.32405	7.93839e-5	1.69759e-7	0.00494878	3.2675900000000003e-05
chr17	81138298	81138398	6982885	0	-	0.56	(0.523,0.58]	chr17	713268	34	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	436	2	7.97438	8.119415	8.26445	1.24404e-4	2.13789e-6	0.00618972	1.744e-4
chr6	15263058	15263158	2856677	0	+	0.5	(0.485,0.523]	chr6	279178	137	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	0	439	2	7.92258	8.11877	8.31496	1.10413e-4	2.74801e-6	0.00586598	2.06311e-4
chr10	103700909	103701009	4757109	0	-	0.45	(0.419,0.45]	chr10	454791	74	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	442	2	8.06022	8.118655	8.17709	4.43488e-4	3.67084e-6	0.0121128	2.55175e-4
chr5	139652864	139652964	2549689	0	+	0.46	(0.45,0.485]	chr5	253168	13	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	0	444	2	7.89273	8.118310000000001	8.34389	1.35227e-4	4.07748e-6	0.00645702	2.74028e-4
chr16	87739524	87739624	6656476	0	-	0.56	(0.523,0.58]	chr16	665892	85	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	431	2	7.89917	8.11742	8.33567	2.66882e-4	6.419e-7	0.0092576	7.85747e-5
chr20	63731919	63732019	7509358	0	+	0.42	(0.419,0.45]	chr20	783515	224	INTRON	INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	457	2	7.64911	8.116675	8.58424	9.51747e-4	1.06056e-6	0.0184489	1.08356e-4
chr7	47474008	47474108	3588548	0	-	0.46	(0.45,0.485]	chr7	346123	209	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	433	2	8.02971	8.116605	8.2035	2.56715e-4	1.50396e-6	0.00907079	1.372e-4
chr11	70886705	70886805	5063154	0	-	0.34	(0.33,0.36]	chr11	492728	137	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000645599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	453	2	7.78576	8.1151	8.44444	1.17784e-4	7.6296e-6	0.00604154	4.24523e-4
chr21	46403180	46403279	7633011	0	+	0.565657	(0.523,0.58]	chr21	798231	3	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5	protein_coding	protein_coding	protein_coding	protein_coding	0	440	2	7.68747	8.1145	8.54153	4.12746e-4	3.20686e-7	0.0116511	4.95473e-5
chr11	117809986	117810085	5134983	0	-	0.383838	(0.36,0.39]	chr11	498595	76	INTRON	INTRON	FXYD2	ENSG00000137731.14	ENST00000514385.1:ENST00000532119.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	438	2	8.08857	8.113825	8.13908	3.22064e-4	3.29258e-6	0.0102338	2.34909e-4
chr22	32820195	32820294	7717811	0	+	0.545455	(0.523,0.58]	chr22	807776	177	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	0	565	2	7.0862	8.11355	9.1409	3.69579e-5	1.90989e-5	0.00251126	0.00131447
chr17	82717851	82717943	6818056	0	+	0.369565	(0.36,0.39]	chr17	689119	6	INTRON	INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	452	2	7.82696	8.113135	8.39931	1.75253e-4	8.53594e-6	0.0074256	4.57865e-4
chr6	16620215	16620315	3103041	0	-	0.38	(0.36,0.39]	chr6	300871	37	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6:ENST00000495178.1:ENST00000646259.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	437	2	8.04375	8.111664999999999	8.17958	3.51375e-4	2.9066e-6	0.0107165	2.15424e-4
chr17	77485325	77485425	6805235	0	+	0.5	(0.485,0.523]	chr17	686821	13	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	435	2	7.94686	8.1115100000000009	8.27616	1.19842e-4	2.5381e-6	0.00607292	1.95444e-4
chr7	2047712	2047812	3530709	0	-	0.53	(0.523,0.58]	chr7	340995	327	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	436	2	7.72909	8.11092	8.49275	3.78993e-4	3.78188e-7	0.011147	5.51827e-5
chr16	81626691	81626791	6509564	0	+	0.51	(0.485,0.523]	chr16	645926	46	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	1	1210	2	7.20333	8.11086	9.01839	1.26497e-5	7.0013e-8	0.0020724	1.87236e-5
chr1	40422854	40422949	100732	0	+	0.547368	(0.523,0.58]	chr1	11989	9	UTR3	UTR3:EXON_MRNA	SMAP2	ENSG00000084070.12	ENST00000372718.8:ENST00000372708.5:ENST00000614549.4:ENST00000539317.2	protein_coding	protein_coding	protein_coding	protein_coding	0	447	2	7.77123	8.110675	8.45012	8.40154e-5	4.16461e-6	0.00507439	2.78321e-4
chr22	50711214	50711314	7755297	0	+	0.63	(0.58,1]	chr22	812778	2	SS3_PROX	SS3_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	912	2	6.6474	8.11035	9.5733	1.35321e-6	2.15569e-7	9.42471e-4	3.83922e-5
chr17	81138398	81138498	6982886	0	-	0.56	(0.523,0.58]	chr17	713268	35	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	430	2	8.0362	8.109565	8.18293	1.47668e-4	1.7427e-6	0.0067648	1.51647e-4
chr1	12583154	12583254	402434	0	-	0.58	(0.523,0.58]	chr1	46222	21	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	450	2	7.73441	8.10948	8.48455	7.80938e-5	4.69573e-6	0.00492356	3.01296e-4
chr17	38726297	38726397	6729346	0	+	0.56	(0.523,0.58]	chr17	676371	8	UTR3	UTR3:EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	MLLT6	ENSG00000275023.5	ENST00000621332.5:ENST00000619356.1:ENST00000615741.1:ENST00000615441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	4410	2	7.81639	8.109300000000001	8.40221	1.21059e-6	2.64285e-10	9.12923e-4	5.72821e-7
chr2	239345184	239345284	1392162	0	-	0.44	(0.419,0.45]	chr2	148752	207	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	439	2	7.98819	8.108665	8.22914	5.07571e-4	3.13565e-6	0.0130815	2.26992e-4
chr19	8248831	8248930	7200372	0	+	0.545455	(0.523,0.58]	chr19	734198	70	INTRON	INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	461	2	7.62802	8.10786	8.5877	6.27035e-5	6.63212e-6	0.00440149	3.85278e-4
chr19	33203486	33203581	7240907	0	+	0.473684	(0.45,0.485]	chr19	741410	1	INTRON	INTRON	LRP3	ENSG00000130881.14	ENST00000592484.5:ENST00000253193.9:ENST00000590275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	441	2	7.69587	8.10749	8.51911	5.02031e-4	5.38332e-7	0.0129939	6.95467e-5
chr1	1052208	1052304	1286	0	+	0.604167	(0.58,1]	chr1	283	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	1071	2	7.17378	8.1074	9.04102	3.73892e-6	1.15392e-8	0.00122199	5.9084e-6
chr2	53982774	53982874	795028	0	+	0.44	(0.419,0.45]	chr2	90708	75	INTRON	INTRON	ACYP2	ENSG00000170634.13	ENST00000458030.3:ENST00000422521.2:ENST00000607452.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	450	2	7.85144	8.105305000000001	8.35917	2.52141e-4	9.75115e-6	0.00898755	5.04053e-4
chr2	53858336	53858435	1146580	0	-	0.383838	(0.36,0.39]	chr2	125166	31	INTRON	INTRON	ASB3:GPR75	ENSG00000115239.24:ENSG00000119737.6	ENST00000406625.6:ENST00000498475.2:ENST00000459916.1:ENST00000394705.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	458	2	7.55269	8.104800000000001	8.65691	9.00679e-4	6.58057e-7	0.0178629	7.9624e-5
chr2	3294203	3294303	1081049	0	-	0.54	(0.523,0.58]	chr2	117633	115	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	926	2	6.93042	8.104714999999999	9.27901	1.41577e-5	2.37728e-7	0.00218388	4.06987e-5
chr2	202662084	202662184	996416	0	+	0.43	(0.419,0.45]	chr2	109362	259	INTRON	INTRON	FAM117B	ENSG00000138439.12	ENST00000392238.3:ENST00000481658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	454	2	7.79211	8.103645	8.41518	2.26655e-4	1.16296e-5	0.00851514	5.71933e-4
chr10	119347374	119347473	4594721	0	+	0.464646	(0.45,0.485]	chr10	439173	204	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	429	2	7.99621	8.103175	8.21014	2.74729e-4	1.47201e-6	0.00943643	1.35091e-4
chr19	1998061	1998159	7307774	0	-	0.428571	(0.419,0.45]	chr19	753493	2	INTRON	INTRON	BTBD2	ENSG00000133243.10	ENST00000255608.9:ENST00000589200.3:ENST00000590646.5:ENST00000587742.5:ENST00000588395.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	437	2	8.04739	8.102235	8.15708	4.54295e-4	3.89975e-6	0.0122651	2.65981e-4
chr7	6702487	6702585	3542738	0	-	0.469388	(0.45,0.485]	chr7	342318	17	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	1	946	2	6.88363	8.1019	9.32017	1.76562e-5	3.98725e-7	0.00241784	5.72344e-5
chr20	63731819	63731919	7509357	0	+	0.36	(0.33,0.36]	chr20	783515	223	INTRON	INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	471	2	7.39824	8.10132	8.8044	9.51623e-4	3.04839e-7	0.0184489	4.7975e-5
chr17	72920548	72920648	6967494	0	-	0.5	(0.485,0.523]	chr17	710518	704	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	425	2	7.97075	8.100465	8.23018	2.27355e-4	9.97111e-7	0.00851514	1.04991e-4
chr21	45452324	45452424	7630786	0	+	0.43	(0.419,0.45]	chr21	797656	465	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	439	2	7.8546	8.100165	8.34573	6.51101e-4	2.20034e-6	0.0149908	1.77833e-4
chr13	113050120	113050219	5656136	0	+	0.494949	(0.485,0.523]	chr13	555180	29	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	452	2	7.67372	8.098535	8.52335	7.09509e-5	6.16462e-6	0.0047097	3.65322e-4
chr13	113058994	113059094	5656227	0	+	0.49	(0.485,0.523]	chr13	555189	42	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	439	2	7.81235	8.09835	8.38435	9.53307e-5	3.93619e-6	0.00545828	2.67098e-4
chr16	78481649	78481749	6499228	0	+	0.44	(0.419,0.45]	chr16	645683	485	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000684632.1:ENST00000627394.3:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6:ENST00000408984.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	440	2	7.80971	8.09806	8.38641	7.07662e-4	1.94371e-6	0.0156815	1.63137e-4
chr2	121478622	121478722	1262512	0	-	0.57	(0.523,0.58]	chr2	136083	83	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	1039	2	6.34323	8.097585	9.85194	4.05502e-6	1.738e-6	0.00124654	1.51436e-4
chr3	195112452	195112552	1981135	0	-	0.61	(0.58,1]	chr3	201655	184	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000437101.5:ENST00000473200.1:ENST00000429994.5:ENST00000356740.5:ENST00000418940.5:ENST00000491138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	409	2	8.06325	8.097190000000001	8.13113	5.56854e-5	3.45578e-7	0.00414032	5.18663e-5
chr13	112913216	112913316	5654748	0	+	0.47	(0.45,0.485]	chr13	555099	27	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000442625.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	458	2	7.63091	8.093695	8.55648	8.72417e-5	9.3252e-6	0.00518923	4.88957e-4
chr7	75935605	75935705	3396811	0	+	0.47	(0.45,0.485]	chr7	328054	123	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000449920.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	435	2	7.88445	8.09254	8.30063	1.47778e-4	4.18637e-6	0.00676637	2.79002e-4
chr8	727056	727155	3933001	0	-	0.494949	(0.485,0.523]	chr8	376060	107	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	423	2	8.07129	8.092375	8.11346	1.84323e-4	1.46755e-6	0.007657	1.35052e-4
chr16	20691774	20691874	6416376	0	+	0.42	(0.419,0.45]	chr16	634386	97	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	457	2	7.53423	8.091	8.64777	0.00117443	8.72255e-7	0.0207078	9.63128e-5
chr17	50461984	50462083	6752059	0	+	0.555556	(0.523,0.58]	chr17	680706	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACSF2	ENSG00000167107.13	ENST00000510410.5:ENST00000300441.9:ENST00000504392.5:ENST00000506582.5:ENST00000427954.6:ENST00000502667.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	421	2	7.99782	8.08894	8.18006	2.17448e-4	1.08043e-6	0.00834646	1.09706e-4
chr21	43975263	43975362	7625544	0	+	0.555556	(0.523,0.58]	chr21	796959	34	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000398063.6:ENST00000398058.5:ENST00000546158.1:ENST00000479117.5:ENST00000467358.5:ENST00000484865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	427	2	7.74541	8.08811	8.43081	3.66506e-4	4.66107e-7	0.0109836	6.34367e-5
chr6	128108080	128108180	3253034	0	-	0.38	(0.36,0.39]	chr6	315160	177	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000531050.5:ENST00000524534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	430	2	7.9497	8.08757	8.22544	4.21588e-4	2.5232e-6	0.011772	1.94743e-4
chr20	58688450	58688549	7498562	0	+	0.434343	(0.419,0.45]	chr20	781977	91	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1:ENST00000413559.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	0	435	2	8.01604	8.087505	8.15897	3.68312e-4	5.96295e-6	0.0110278	3.5765e-4
chr2	74032405	74032505	834323	0	+	0.59	(0.58,1]	chr2	94249	289	INTRON	INTRON	TET3	ENSG00000187605.16	ENST00000409262.8:ENST00000305799.8	protein_coding	protein_coding	protein_coding	protein_coding	1	847	2	7.00923	8.086805	9.16438	3.75922e-6	5.54916e-8	0.00122199	1.58177e-5
chr8	124660415	124660514	4064261	0	-	0.525253	(0.523,0.58]	chr8	387128	411	INTRON	INTRON	MTSS1	ENSG00000170873.19	ENST00000518547.6:ENST00000378017.7:ENST00000325064.9:ENST00000522162.1:ENST00000529463.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	439	2	7.75294	8.08644	8.41994	8.95674e-5	4.42065e-6	0.00524798	2.8801e-4
chr1	61196822	61196922	147250	0	+	0.35	(0.33,0.36]	chr1	17147	639	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	426	2	8.02083	8.085325000000001	8.14982	2.78104e-4	2.45415e-6	0.00948447	1.91615e-4
chr2	69814687	69814786	825799	0	+	0.484848	(0.45,0.485]	chr2	93042	16	INTRON	INTRON	ANXA4	ENSG00000196975.16	ENST00000477632.5:ENST00000409920.5:ENST00000635311.1:ENST00000394295.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	460	2	7.58055	8.08443	8.58831	8.16786e-5	1.09169e-5	0.00501825	5.4861e-4
chr19	7640068	7640156	7199315	0	+	0.488636	(0.485,0.523]	chr19	733969	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	STXBP2	ENSG00000076944.17	ENST00000593535.5:ENST00000595950.5:ENST00000221283.10:ENST00000441779.6:ENST00000595181.5:ENST00000597068.5:ENST00000414284.6:ENST00000599737.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	421	2	7.89961	8.08442	8.26923	2.63582e-4	8.75797e-7	0.00919874	9.63871e-5
chr4	1324594	1324692	1995284	0	+	0.510204	(0.485,0.523]	chr4	203264	6	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	426	2	7.74584	8.08362	8.4214	3.62142e-4	5.27119e-7	0.0108921	6.86792e-5
chr4	1324789	1324886	1995286	0	+	0.505155	(0.485,0.523]	chr4	203264	8	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	422	2	7.83243	8.082234999999999	8.33204	3.0292e-4	7.10502e-7	0.00988096	8.36689e-5
chr7	139703744	139703844	3723183	0	-	0.57	(0.523,0.58]	chr7	357498	717	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	428	2	7.87638	8.08165	8.28692	1.18651e-4	2.95188e-6	0.00606093	2.17437e-4
chr7	47362686	47362786	3587418	0	-	0.39	(0.36,0.39]	chr7	346030	160	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	428	2	7.96352	8.081465	8.19941	4.10476e-4	2.73421e-6	0.0116246	2.05551e-4
chr5	649309	649408	2378775	0	+	0.616162	(0.58,1]	chr5	237646	10	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	404	2	7.92964	8.08023	8.23082	7.6633e-5	2.39537e-7	0.00489022	4.07877e-5
chr17	57544105	57544205	6762656	0	+	0.49	(0.485,0.523]	chr17	682152	140	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1:ENST00000674898.1:ENST00000674574.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	426	2	7.7213	8.079965	8.43863	3.80885e-4	4.97578e-7	0.0111772	6.61125e-5
chr11	64146654	64146754	5049044	0	-	0.54	(0.523,0.58]	chr11	490257	199	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	420	2	7.85474	8.079675	8.30461	2.92581e-4	7.1241e-7	0.00971434	8.36689e-5
chr6	36065513	36065612	2904676	0	+	0.474747	(0.45,0.485]	chr6	284907	58	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000622903.4:ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5:ENST00000472333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	436	2	7.79893	8.079355	8.35978	1.30884e-4	5.4923e-6	0.00634133	3.37015e-4
chr2	239281477	239281577	1391523	0	-	0.44	(0.419,0.45]	chr2	148740	299	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	453	2	7.525	8.079175	8.63335	0.00119436	9.11843e-7	0.020937	9.84472e-5
chr11	61272610	61272698	5041302	0	-	0.375	(0.36,0.39]	chr11	488756	5	INTRON	INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10:ENST00000535710.1:ENST00000398808.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	432	2	7.94129	8.07826	8.21523	2.5155e-4	6.03231e-6	0.0089838	3.59002e-4
chr17	72557325	72557424	6963884	0	-	0.555556	(0.523,0.58]	chr17	710389	229	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	2	2428	2	7.37221	8.077695	8.78318	8.85707e-6	3.72241e-10	0.00180272	6.91147e-7
chr20	3492196	3492295	7419773	0	+	0.545455	(0.523,0.58]	chr20	772906	203	INTRON	INTRON	ATRN	ENSG00000088812.18	ENST00000262919.10:ENST00000446916.2	protein_coding	protein_coding	protein_coding	protein_coding	0	434	2	7.77123	8.07757	8.38391	9.66686e-5	4.16461e-6	0.00549605	2.78321e-4
chr8	726260	726359	3932993	0	-	0.535354	(0.523,0.58]	chr8	376060	99	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	418	2	7.92089	8.077355	8.23382	2.55138e-4	9.02928e-7	0.00904796	9.79607e-5
chr14	89267953	89268053	6026778	0	-	0.4	(0.39,0.419]	chr14	591436	35	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	428	2	8.06117	8.077325	8.09348	3.31824e-4	4.24051e-6	0.0103819	2.81464e-4
chr21	46403970	46404069	7633019	0	+	0.626263	(0.58,1]	chr21	798231	11	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5	protein_coding	protein_coding	protein_coding	protein_coding	0	413	2	7.65447	8.077195	8.49992	1.46869e-4	8.83425e-8	0.00675599	2.19155e-5
chr21	45501033	45501132	7631315	0	+	0.545455	(0.523,0.58]	chr21	797812	30	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	0	425	2	7.89318	8.07598	8.25878	1.25899e-4	2.79337e-6	0.00622155	2.08969e-4
chr7	92625176	92625275	3636846	0	-	0.444444	(0.419,0.45]	chr7	350296	17	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	0	430	2	8.0381	8.07427	8.11044	4.03555e-4	5.58092e-6	0.0114903	3.4133e-4
chr17	81074573	81074672	6813766	0	+	0.606061	(0.58,1]	chr17	688114	104	INTRON	INTRON	BAIAP2	ENSG00000175866.16	ENST00000321280.11:ENST00000576470.5:ENST00000575750.5:ENST00000428708.7:ENST00000572329.5:ENST00000575989.5:ENST00000570913.5:ENST00000575712.5:ENST00000575245.5:ENST00000321300.10:ENST00000435091.7:ENST00000573894.5:ENST00000571530.5:ENST00000572918.5:ENST00000573017.5:ENST00000575958.5:ENST00000573659.5:ENST00000572073.5:ENST00000573677.5:ENST00000574804.5:ENST00000576364.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	851	2	6.85213	8.07404	9.29595	2.70848e-6	1.00233e-7	0.00111785	2.33173e-5
chr19	11553547	11553646	7332770	0	-	0.565657	(0.523,0.58]	chr19	758564	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ELOF1	ENSG00000130165.10	ENST00000586683.5:ENST00000252445.7:ENST00000587806.5:ENST00000589171.5:ENST00000591674.5:ENST00000586120.5:ENST00000590700.5:ENST00000591912.1	protein_coding	protein_coding	protein_coding	protein_coding	3	1465	2	6.14075	8.073974999999999	10.0072	2.88424e-6	3.0549e-7	0.00112513	4.7975e-5
chr2	239282676	239282776	1391535	0	-	0.43	(0.419,0.45]	chr2	148740	311	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	460	2	7.43919	8.073905	8.70862	0.00139594	7.23045e-7	0.0228423	8.4681e-5
chr1	17676083	17676183	54972	0	+	0.66	(0.58,1]	chr1	5603	111	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	420	2	7.74456	8.073675	8.40279	2.45209e-5	1.40636e-6	0.00284264	1.31121e-4
chr2	239280777	239280877	1391516	0	-	0.43	(0.419,0.45]	chr2	148740	292	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	447	2	7.56157	8.072904999999999	8.58424	0.00111728	1.06056e-6	0.0202011	1.08356e-4
chr13	113613944	113614043	5659140	0	+	0.474747	(0.45,0.485]	chr13	555781	25	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	449	2	7.43088	8.067720000000001	8.70456	8.47151e-4	2.92667e-7	0.0173017	4.65962e-5
chr21	43975065	43975164	7625542	0	+	0.545455	(0.523,0.58]	chr21	796959	32	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000398063.6:ENST00000398058.5:ENST00000546158.1:ENST00000479117.5:ENST00000467358.5:ENST00000484865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	417	2	7.82434	8.067605	8.31087	3.11537e-4	6.97596e-7	0.0100453	8.26807e-5
chr17	76547795	76547894	6977083	0	-	0.393939	(0.39,0.419]	chr17	712268	15	INTRON	INTRON	CYGB:ENSG00000267546	ENSG00000161544.10:ENSG00000267546.2	ENST00000589145.1:ENST00000589963.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	431	2	7.7153	8.066505	8.41771	6.8543e-4	1.41125e-6	0.0154116	1.31237e-4
chr13	50573997	50574097	5598365	0	+	0.41	(0.39,0.419]	chr13	551685	403	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1:ENST00000484869.6	lncRNA	lncRNA	lncRNA	lncRNA	1	957	2	6.7785	8.06649	9.35448	2.73509e-5	9.42383e-7	0.00295549	1.00744e-4
chr15	24984815	24984914	6063693	0	+	0.444444	(0.419,0.45]	chr15	595387	25	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	1	962	2	6.85831	8.06617	9.27403	4.32224e-5	8.83999e-7	0.00364195	9.69154e-5
chr17	80561775	80561874	6809070	0	+	0.383838	(0.36,0.39]	chr17	687806	156	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	435	2	7.64132	8.065570000000001	8.48982	7.61428e-4	1.11029e-6	0.0163173	1.11442e-4
chr15	20441640	20441740	6202463	0	-	0.46	(0.45,0.485]	chr15	610287	6	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000424611.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	422	2	7.7691	8.065045	8.36099	4.3379e-4	9.02197e-7	0.0119405	9.79607e-5
chr6	170399067	170399167	3076570	0	+	0.4	(0.39,0.419]	chr6	299192	31	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	4	2252	2	5.23748	8.064540000000001	10.8916	2.65504e-4	5.1036800000000005e-10	0.00923492	8.65801e-7
chr11	112255078	112255178	4942415	0	+	0.5	(0.485,0.523]	chr11	476600	172	INTRON	INTRON	PTS	ENSG00000150787.8	ENST00000531673.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	445	2	7.60417	8.06376	8.52335	7.09509e-5	7.70941e-6	0.0047097	4.27315e-4
chr2	239281377	239281477	1391522	0	-	0.42	(0.419,0.45]	chr2	148740	298	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	439	2	7.61473	8.063635	8.51254	0.00101372	1.32164e-6	0.0191342	1.25973e-4
chr6	1681025	1681125	3079680	0	-	0.38	(0.36,0.39]	chr6	299464	7	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000533279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	445	2	7.50625	8.0621949999999991	8.61814	9.83172e-4	7.43167e-7	0.0188005	8.61978e-5
chr6	11043427	11043527	3093177	0	-	0.51	(0.485,0.523]	chr6	300390	323	INTRON	INTRON	ELOVL2	ENSG00000197977.4	ENST00000354666.4	protein_coding	protein_coding	protein_coding	protein_coding	0	416	2	7.97862	8.059715	8.14081	1.59339e-4	2.28725e-6	0.00707035	1.82747e-4
chr16	1736944	1737043	6371308	0	+	0.59596	(0.58,1]	chr16	628851	15	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	408	2	7.63653	8.05961	8.48269	1.53179e-4	9.41998e-8	0.00689544	2.24672e-5
chr14	54678421	54678520	5820559	0	+	0.494949	(0.485,0.523]	chr14	569059	92	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1:ENST00000555091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	444	2	7.59396	8.058655	8.52335	7.09509e-5	7.96614e-6	0.0047097	4.36503e-4
chr16	87739325	87739425	6656474	0	-	0.53	(0.523,0.58]	chr16	665892	83	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	415	2	7.79328	8.058305	8.32333	3.32134e-4	6.69056e-7	0.0103819	8.03758e-5
chr10	127262023	127262123	4610547	0	+	0.54	(0.523,0.58]	chr10	440799	42	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2:ENST00000484400.5:ENST00000464466.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	449	2	7.35671	8.057749999999999	8.75879	8.06717e-4	1.53296e-7	0.0168786	3.04321e-5
chr19	16368258	16368357	7343612	0	-	0.464646	(0.45,0.485]	chr19	760668	59	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	416	2	7.89804	8.057395	8.21675	3.34916e-4	1.44086e-6	0.0104432	1.33252e-4
chr4	3378988	3379087	2005228	0	+	0.40404	(0.39,0.419]	chr4	204672	5	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000513784.7:ENST00000338806.4:ENST00000506998.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	421	2	8.00281	8.056835	8.11086	3.95352e-4	3.64152e-6	0.0113656	2.53451e-4
chr4	2826957	2827048	2000389	0	+	0.483516	(0.45,0.485]	chr4	203975	8	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SH3BP2	ENSG00000087266.17	ENST00000503393.8:ENST00000504294.5:ENST00000508385.5:ENST00000511663.5:ENST00000512014.5:ENST00000435136.8:ENST00000511185.5:ENST00000511747.6:ENST00000356331.9:ENST00000515737.5:ENST00000515183.5:ENST00000505941.5:ENST00000510204.5:ENST00000515802.5:ENST00000504450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	430	2	7.58305	8.056405	8.52976	6.27968e-4	5.1986e-7	0.0147128	6.79442e-5
chr20	64269698	64269797	7511209	0	+	0.565657	(0.523,0.58]	chr20	783907	13	INTRON	INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609818.1	protein_coding	protein_coding	protein_coding	protein_coding	0	441	2	7.6078	8.05583	8.50386	7.49542e-5	7.07993e-6	0.00484267	4.04575e-4
chr17	65538018	65538102	6950638	0	-	0.666667	(0.58,1]	chr17	709205	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AXIN2	ENSG00000168646.14	ENST00000307078.10:ENST00000618960.4:ENST00000375702.5	protein_coding	protein_coding	protein_coding	protein_coding	0	401	2	7.95075	8.05569	8.16063	4.40668e-5	6.67696e-7	0.00367146	8.03272e-5
chr6	158040234	158040333	3059900	0	+	0.393939	(0.39,0.419]	chr6	297390	62	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	423	2	7.97945	8.055055	8.13066	3.0876e-4	5.44285e-6	0.00998901	3.35909e-4
chr21	46403476	46403575	7633014	0	+	0.575758	(0.523,0.58]	chr21	798231	6	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5	protein_coding	protein_coding	protein_coding	protein_coding	0	423	2	7.60939	8.05382	8.49825	4.84115e-4	3.71224e-7	0.012746	5.4727e-5
chr13	112873072	112873161	5654403	0	+	0.516854	(0.485,0.523]	chr13	555053	1	SS3_PROX	SS3_PROX:INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000471555.5:ENST00000415301.2:ENST00000419631.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	892	2	7.09032	8.05304	9.01576	2.46583e-5	1.48811e-7	0.00285089	2.99526e-5
chr1	12583453	12583552	402437	0	-	0.525253	(0.523,0.58]	chr1	46222	24	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	426	2	7.75294	8.05262	8.3523	1.03353e-4	4.42065e-6	0.0056665	2.8801e-4
chr2	232888307	232888407	1383714	0	-	0.53	(0.523,0.58]	chr2	147928	2	SS3_PROX	SS3_PROX:INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000424488.5:ENST00000461944.1:ENST00000416114.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	411	2	8.03148	8.052505	8.07353	2.02723e-4	1.53986e-6	0.00805364	1.3934e-4
chr15	28217392	28217492	6207145	0	-	0.54	(0.523,0.58]	chr15	611111	12	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	0	410	2	7.98413	8.050609999999999	8.11709	2.2373e-4	1.33245e-6	0.00845454	1.26716e-4
chr2	222914521	222914621	1038246	0	+	0.46	(0.45,0.485]	chr2	113229	29	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000542810.1:ENST00000540115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	424	2	7.81644	8.050255	8.28407	1.5288e-4	5.19579e-6	0.00689544	3.24753e-4
chr10	79220673	79220773	4533568	0	+	0.53	(0.523,0.58]	chr10	432457	40	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	413	2	7.95049	8.04851	8.14653	1.59384e-4	2.31313e-6	0.00707035	1.84376e-4
chr13	113613745	113613844	5659138	0	+	0.50505	(0.485,0.523]	chr13	555781	23	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	454	2	7.29196	8.048335	8.80471	9.09246e-4	1.44845e-7	0.0180048	2.95221e-5
chr19	1171134	1171234	7305764	0	-	0.5	(0.485,0.523]	chr19	753058	21	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	410	2	8.01854	8.047895	8.07725	2.05799e-4	1.65376e-6	0.00809983	1.46103e-4
chr9	134339933	134340033	4260822	0	+	0.55	(0.523,0.58]	chr9	406311	129	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	419	2	7.82476	8.04743	8.2701	1.22932e-4	3.49614e-6	0.00615337	2.45572e-4
chr13	113056999	113057099	5656207	0	+	0.56	(0.523,0.58]	chr13	555189	22	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	421	2	7.7893	8.04642	8.30354	1.14562e-4	3.92607e-6	0.00596205	2.66734e-4
chr13	113056600	113056700	5656203	0	+	0.55	(0.523,0.58]	chr13	555189	18	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	436	2	7.61794	8.04637	8.4748	7.97283e-5	6.85165e-6	0.00495996	3.9491e-4
chr2	111422109	111422209	1252857	0	-	0.53	(0.523,0.58]	chr2	134896	438	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1	lncRNA	lncRNA	lncRNA	lncRNA	0	425	2	7.54559	8.04622	8.54685	5.51177e-4	3.14964e-7	0.0136794	4.90696e-5
chr4	1324302	1324400	1995281	0	+	0.489796	(0.485,0.523]	chr4	203264	3	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	413	2	7.74584	8.04506	8.34428	3.62142e-4	6.82079e-7	0.0108921	8.14739e-5
chr13	112913116	112913216	5654747	0	+	0.44	(0.419,0.45]	chr13	555099	26	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000442625.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	464	2	7.47397	8.044685	8.6154	1.54597e-4	2.959e-5	0.00692914	0.00111477
chr14	104872555	104872655	5925937	0	+	0.58	(0.523,0.58]	chr14	579942	36	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	2	1324	2	7.31771	8.04397	8.77023	4.24455e-5	1.19967e-8	0.00362006	6.03578e-6
chr7	241803	241902	3306073	0	+	0.50505	(0.485,0.523]	chr7	320161	325	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	410	2	7.81707	8.04315	8.26923	3.12689e-4	8.75797e-7	0.0100453	9.63871e-5
chr1	204082177	204082277	322141	0	+	0.53	(0.523,0.58]	chr1	36272	36	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1:ENST00000528591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	420	2	7.7803	8.041920000000001	8.30354	1.14562e-4	4.04324e-6	0.00596205	2.73258e-4
chr5	14348698	14348798	2385419	0	+	0.44	(0.419,0.45]	chr5	238535	116	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000512070.6:ENST00000509967.6:ENST00000513206.5:ENST00000515144.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	419	2	7.91942	8.041599999999999	8.16378	5.77112e-4	3.82157e-6	0.0140531	2.62442e-4
chr16	81614714	81614813	6509443	0	+	0.444444	(0.419,0.45]	chr16	645921	38	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	422	2	7.94	8.04048	8.14096	3.81024e-4	7.48811e-6	0.0111772	4.19328e-4
chr16	67915181	67915280	6473550	0	+	0.525253	(0.523,0.58]	chr16	642897	51	INTRON	INTRON	PSKH1	ENSG00000159792.10	ENST00000291041.6	protein_coding	protein_coding	protein_coding	protein_coding	1	880	2	7.02184	8.040125	9.05841	2.28284e-5	1.73802e-7	0.00276344	3.32116e-5
chr6	1817052	1817152	3081043	0	-	0.35	(0.33,0.36]	chr6	299482	741	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	419	2	7.69363	8.038405	8.38318	5.33831e-4	1.17378e-6	0.0134768	1.15959e-4
chr21	46403378	46403476	7633013	0	+	0.581633	(0.58,1]	chr21	798231	5	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5	protein_coding	protein_coding	protein_coding	protein_coding	0	396	2	7.73257	8.03792	8.34327	1.22236e-4	1.581e-7	0.00614266	3.12012e-5
chr18	76418266	76418366	7179302	0	-	0.41	(0.39,0.419]	chr18	730080	376	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	417	2	7.81764	8.037195	8.25675	5.6405e-4	2.324e-6	0.0138715	1.84979e-4
chr16	2164201	2164301	6372944	0	+	0.63	(0.58,1]	chr16	629423	2	SS5_PROX	SS5_PROX:INTRON	TRAF7	ENSG00000131653.13	ENST00000565383.5:ENST00000569686.5:ENST00000326181.11:ENST00000567653.5:ENST00000564067.5:ENST00000567645.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	1317	2	6.07208	8.03699	10.0019	1.83041e-5	2.90313e-10	0.0024612	6.05223e-7
chr10	103701908	103702007	4757119	0	-	0.474747	(0.45,0.485]	chr10	454791	84	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	413	2	7.94144	8.0367	8.13196	2.08574e-4	3.49104e-6	0.00813372	2.45572e-4
chr2	120278114	120278214	887953	0	+	0.51	(0.485,0.523]	chr2	100429	1	SS3_PROX	SS3_PROX:INTRON	RALB	ENSG00000144118.14	ENST00000447591.5:ENST00000420510.5:ENST00000431732.5:ENST00000272519.10:ENST00000631312.2:ENST00000470417.1:ENST00000412383.5:ENST00000449649.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	425	2	7.50826	8.036275	8.56429	5.88357e-4	3.26335e-7	0.0142143	5.01278e-5
chr8	128041266	128041364	3920294	0	+	0.397959	(0.39,0.419]	chr8	374321	10	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	0	424	2	7.64851	8.035924999999999	8.42334	7.77925e-4	1.38676e-6	0.0165317	1.30178e-4
chr19	35002021	35002121	7244878	0	+	0.48	(0.45,0.485]	chr19	742064	2	SS3_PROX	SS3_PROX:INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	449	2	7.49611	8.03543	8.57475	8.40037e-5	1.42008e-5	0.00507439	6.57379e-4
chr1	3470849	3470944	5817	0	+	0.642105	(0.58,1]	chr1	1229	9	INTRON	INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5	protein_coding	protein_coding	protein_coding	protein_coding	0	462	2	7.28283	8.03504	8.78725	9.56511e-6	7.19115e-6	0.00184506	4.08425e-4
chr10	75764903	75765003	4523814	0	+	0.5	(0.485,0.523]	chr10	432277	213	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	406	2	7.89961	8.03459	8.16957	2.63582e-4	1.21906e-6	0.00919874	1.1904e-4
chr6	3352360	3352460	3087013	0	-	0.51	(0.485,0.523]	chr6	299774	280	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000496753.1:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	406	2	7.98457	8.034565	8.08456	2.20906e-4	1.61436e-6	0.00839442	1.43996e-4
chr15	28653078	28653177	6068889	0	+	0.434343	(0.419,0.45]	chr15	596168	11	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	0	419	2	7.80209	8.03454	8.26699	7.17724e-4	2.7956e-6	0.0158219	2.09042e-4
chr3	93956514	93956614	1853005	0	-	0.45	(0.419,0.45]	chr3	189045	274	INTRON	INTRON	PROS1	ENSG00000184500.16	ENST00000394236.9:ENST00000648381.1:ENST00000648853.1:ENST00000650591.1:ENST00000348974.5:ENST00000647936.1:ENST00000407433.6:ENST00000649103.1:ENST00000472684.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	417	2	7.90527	8.034524999999999	8.16378	5.92536e-4	3.82157e-6	0.0142947	2.62442e-4
chr15	28652582	28652682	6068884	0	+	0.53	(0.523,0.58]	chr15	596168	6	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	0	406	2	7.83962	8.033415	8.22721	3.01864e-4	9.231e-7	0.00987906	9.90613e-5
chr14	68899966	68900065	5999339	0	-	0.606061	(0.58,1]	chr14	588704	59	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	408	2	7.70548	8.032585000000001	8.35969	2.72287e-5	1.6179e-6	0.00294944	1.43996e-4
chr20	64270490	64270589	7511217	0	+	0.59596	(0.58,1]	chr20	783907	21	INTRON	INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609818.1	protein_coding	protein_coding	protein_coding	protein_coding	1	1039	2	7.19006	8.032465	8.87487	3.58961e-6	2.1638e-8	0.00120797	8.66834e-6
chr19	16368756	16368855	7343617	0	-	0.454545	(0.45,0.485]	chr19	760668	64	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	408	2	7.91965	8.03098	8.14231	3.20655e-4	1.8325e-6	0.0102165	1.56478e-4
chr20	62272908	62273008	7506836	0	+	0.52	(0.485,0.523]	chr20	782706	2	SS3_PROX	SS3_PROX:INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000642957.1:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	416	2	7.78567	8.030915	8.27616	1.19842e-4	4.2924e-6	0.00607292	2.82813e-4
chr17	80024601	80024701	6982162	0	-	0.48	(0.45,0.485]	chr17	713081	106	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7	protein_coding	protein_coding	protein_coding	protein_coding	0	416	2	7.65351	8.030735	8.40796	5.46137e-4	7.74154e-7	0.0136476	8.87873e-5
chr1	91729004	91729104	526237	0	-	0.53	(0.523,0.58]	chr1	61872	8	INTRON	INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000468996.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	1459	2	6.74306	8.03039	9.31772	1.30162e-5	3.80164e-8	0.00209785	1.24701e-5
chr9	108900775	108900875	4362799	0	-	0.53	(0.523,0.58]	chr9	416548	4	SS3_PROX	SS3_PROX:INTRON	ELP1	ENSG00000070061.16	ENST00000675765.1:ENST00000374647.10:ENST00000675078.1:ENST00000674948.1:ENST00000676121.1:ENST00000676429.1:ENST00000674704.1:ENST00000674938.1:ENST00000675602.1:ENST00000675215.1:ENST00000676044.1:ENST00000675979.1:ENST00000675325.1:ENST00000495759.6:ENST00000675893.1:ENST00000675943.1:ENST00000675535.1:ENST00000674890.1:ENST00000675233.1:ENST00000676086.1:ENST00000674836.1:ENST00000675406.1:ENST00000675748.1:ENST00000675400.1:ENST00000676237.1:ENST00000675825.1:ENST00000676424.1:ENST00000675647.1:ENST00000675877.1:ENST00000676416.1:ENST00000675052.1:ENST00000674535.1:ENST00000537196.1:ENST00000675566.1:ENST00000675507.1:ENST00000675727.1:ENST00000675711.1:ENST00000675458.1:ENST00000675335.1:ENST00000675321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	405	2	7.83962	8.030095	8.22057	3.01864e-4	9.43813e-7	0.00987906	1.00833e-4
chr13	98259901	98260001	5634830	0	+	0.43	(0.419,0.45]	chr13	553480	147	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	0	448	2	7.54756	8.029665	8.51177	1.88515e-4	2.38821e-5	0.0077446	9.56571e-4
chr3	195150792	195150892	1981521	0	-	0.52	(0.485,0.523]	chr3	201666	39	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000437101.5:ENST00000473200.1:ENST00000429994.5:ENST00000418940.5:ENST00000491138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	405	2	7.82477	8.027475	8.23018	3.07754e-4	9.97111e-7	0.00996934	1.04991e-4
chr6	169621252	169621352	3304069	0	-	0.44	(0.419,0.45]	chr6	319826	72	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	428	2	7.57951	8.027405	8.4753	0.00108124	1.48131e-6	0.0198009	1.35797e-4
chr5	856475	856575	2607919	0	-	0.5	(0.485,0.523]	chr5	259417	55	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	0	454	2	7.2237	8.027375	8.83105	0.00104165	1.32465e-7	0.0193905	2.7946e-5
chr16	2165071	2165166	6372953	0	+	0.652632	(0.58,1]	chr16	629424	7	INTRON	INTRON	TRAF7	ENSG00000131653.13	ENST00000565383.5:ENST00000569686.5:ENST00000326181.11:ENST00000567653.5:ENST00000564067.5:ENST00000567645.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	2004	2	7.56101	8.0266	8.49219	1.41406e-6	1.87742e-10	9.51831e-4	5.33719e-7
chr21	45133982	45134082	7629260	0	+	0.71	(0.58,1]	chr21	797545	3	SS5_PROX	SS5_PROX:INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5:ENST00000449478.1:ENST00000464215.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	960	2	6.64581	8.024615	9.40342	1.39094e-5	2.90118e-9	0.0021831	2.50955e-6
chr6	144293803	144293903	3019945	0	+	0.33	(0.29,0.33]	chr6	295138	15	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1	protein_coding	protein_coding	protein_coding	protein_coding	0	412	2	7.79806	8.023535	8.24901	1.03764e-4	4.6351e-6	0.00568206	2.98713e-4
chr1	1030921	1031020	1024	0	+	0.525253	(0.523,0.58]	chr1	166	81	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	403	2	8.02099	8.0229	8.02481	2.05561e-4	1.83268e-6	0.00809983	1.56478e-4
chr10	46807304	46807403	4484756	0	+	0.515152	(0.485,0.523]	chr10	428921	50	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000688259.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	405	2	7.95487	8.022725	8.09058	1.77028e-4	2.47243e-6	0.00747595	1.92772e-4
chr20	20465133	20465233	7533849	0	-	0.55	(0.523,0.58]	chr20	786266	526	INTRON	INTRON	RALGAPA2	ENSG00000188559.16	ENST00000202677.12:ENST00000430436.5	protein_coding	protein_coding	protein_coding	protein_coding	1	941	2	6.42489	8.02215	9.61941	6.74544e-6	1.32139e-6	0.00157008	1.25973e-4
chr10	132755372	132755472	4619026	0	+	0.56	(0.523,0.58]	chr10	441201	15	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	0	403	2	7.80889	8.021355	8.23382	3.21619e-4	9.02928e-7	0.010233	9.79607e-5
chr2	10368177	10368277	719081	0	+	0.49	(0.485,0.523]	chr2	84032	134	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	1135	2	7.10674	8.021305	8.93587	1.56233e-5	9.27553e-8	0.00227158	2.2286e-5
chr16	85426820	85426920	6517339	0	+	0.46	(0.45,0.485]	chr16	646391	675	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	440	2	7.51769	8.020814999999999	8.52394	9.33155e-5	1.32798e-5	0.00538091	6.28604e-4
chr7	16990853	16990953	3323662	0	+	0.46	(0.45,0.485]	chr7	322059	741	INTRON	INTRON	AHR	ENSG00000106546.14	ENST00000645559.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	406	2	8.01155	8.02063	8.02971	2.56715e-4	2.78984e-6	0.00907079	2.08969e-4
chr10	103701808	103701908	4757118	0	-	0.44	(0.419,0.45]	chr10	454791	83	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	413	2	7.98819	8.020405	8.05262	5.07571e-4	5.34268e-6	0.0130815	3.30369e-4
chr10	132755472	132755572	4619027	0	+	0.54	(0.523,0.58]	chr10	441201	16	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	0	404	2	7.76154	8.020405	8.27927	3.54552e-4	7.75553e-7	0.0107472	8.87873e-5
chr7	1070982	1071082	3526937	0	-	0.62	(0.58,1]	chr7	340585	158	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	387	2	7.92964	8.01924	8.10884	7.6633e-5	3.74999e-7	0.00489022	5.51003e-5
chr1	1030622	1030722	1021	0	+	0.53	(0.523,0.58]	chr1	166	78	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	405	2	7.90979	8.018885000000001	8.12798	1.657e-4	2.64492e-6	0.00722431	2.01088e-4
chr10	75493296	75493396	4521091	0	+	0.5	(0.485,0.523]	chr10	432249	417	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	1169	2	6.71658	8.018730000000001	9.32088	1.27227e-5	1.05362e-7	0.0020735	2.41408e-5
chr10	95255864	95255964	4732381	0	-	0.43	(0.419,0.45]	chr10	451807	81	INTRON	INTRON	PDLIM1	ENSG00000107438.9	ENST00000329399.7:ENST00000477757.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	414	2	7.79443	8.01815	8.24187	7.2798e-4	3.01699e-6	0.0158986	2.21069e-4
chr2	78183317	78183417	1209283	0	-	0.38	(0.36,0.39]	chr2	130071	2431	INTRON	INTRON	ENSG00000227088	ENSG00000227088.2	ENST00000667782.1	lncRNA	lncRNA	lncRNA	lncRNA	0	409	2	7.95663	8.016375	8.07612	4.15983e-4	3.99505e-6	0.0117169	2.70439e-4
chr17	80224236	80224336	6806861	0	+	0.53	(0.523,0.58]	chr17	687275	5	INTRON	INTRON	SLC26A11	ENSG00000181045.15	ENST00000361193.8:ENST00000546047.6:ENST00000411502.7:ENST00000571888.5:ENST00000576126.5:ENST00000572725.5:ENST00000571564.5:ENST00000571176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	407	2	7.84217	8.01554	8.18891	1.45826e-4	3.30235e-6	0.00674279	2.35406e-4
chr4	70720865	70720964	2054532	0	+	0.40404	(0.39,0.419]	chr4	209967	152	INTRON	INTRON	RUFY3	ENSG00000018189.13	ENST00000503876.5:ENST00000417478.6	protein_coding	protein_coding	protein_coding	protein_coding	0	409	2	7.95525	8.015395	8.07554	4.33274e-4	4.05793e-6	0.0119405	2.7359e-4
chr10	132755672	132755772	4619029	0	+	0.59	(0.58,1]	chr10	441201	18	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	0	386	2	7.93698	8.015385	8.09379	7.5303e-5	3.96253e-7	0.00484351	5.6977e-5
chr13	39044275	39044369	5576133	0	+	0.43617	(0.419,0.45]	chr13	549882	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NHLRC3	ENSG00000188811.14	ENST00000470258.5:ENST00000379599.6:ENST00000379600.8:ENST00000485407.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	421	2	7.78343	8.01461	8.24579	3.12617e-4	1.19326e-5	0.0100453	5.82737e-4
chr14	58419442	58419542	5989775	0	-	0.47	(0.45,0.485]	chr14	587526	71	INTRON	INTRON	TIMM9	ENSG00000100575.14	ENST00000395159.7:ENST00000216463.8:ENST00000555593.5:ENST00000556007.6:ENST00000557397.5:ENST00000556367.6:ENST00000555930.6:ENST00000555404.5:ENST00000555097.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	404	2	8.0097	8.014415	8.01913	2.67329e-4	2.72286e-6	0.0092695	2.0488e-4
chrX	120436099	120436197	8096601	0	-	0.510204	(0.485,0.523]	chrX	844120	43	INTRON	INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	400	2	7.89961	8.01365	8.12769	2.63582e-4	1.40015e-6	0.00919874	1.3093e-4
chr21	44866445	44866543	7678506	0	-	0.561224	(0.523,0.58]	chr21	802773	4	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	5622	2	7.84527	8.013645	8.18202	5.22618e-7	3.088e-9	7.30832e-4	2.56741e-6
chr2	232900663	232900762	1383845	0	-	0.454545	(0.45,0.485]	chr2	147952	54	INTRON	INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000416114.3:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	411	2	7.63622	8.013375	8.39053	5.6521e-4	8.19439e-7	0.0138732	9.21344e-5
chr6	169706670	169706759	3304947	0	-	0.47191	(0.45,0.485]	chr6	319985	6	INTRON	INTRON	PHF10	ENSG00000130024.15	ENST00000339209.9:ENST00000366780.8:ENST00000621772.4	protein_coding	protein_coding	protein_coding	protein_coding	1	888	2	6.81598	8.013245	9.21051	2.225e-5	4.9877e-7	0.00272839	6.61662e-5
chr11	117809887	117809986	5134982	0	-	0.444444	(0.419,0.45]	chr11	498595	75	INTRON	INTRON	FXYD2	ENSG00000137731.14	ENST00000514385.1:ENST00000532119.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	413	2	7.93217	8.01199	8.09181	4.1794e-4	7.66539e-6	0.0117646	4.25718e-4
chr13	33628169	33628268	5688855	0	-	0.40404	(0.39,0.419]	chr13	558272	100	INTRON	INTRON	ENSG00000230490	ENSG00000230490.4	ENST00000686875.1:ENST00000454681.2:ENST00000655117.2:ENST00000690486.1:ENST00000654283.1	lncRNA	lncRNA	lncRNA	lncRNA	0	412	2	7.72343	8.01183	8.3002300000000009	6.7492e-4	2.03167e-6	0.0153083	1.6825e-4
chrX	48465223	48465320	8040340	0	-	0.443299	(0.419,0.45]	chrX	838611	19	INTRON	INTRON	SLC38A5	ENSG00000017483.16	ENST00000595796.5:ENST00000619100.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5:ENST00000416711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	468	2	7.16994	8.0112	8.85246	0.00226312	4.63389e-7	0.0300628	6.31178e-5
chr1	43597148	43597247	107422	0	+	0.40404	(0.39,0.419]	chr1	13240	42	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	0	414	2	7.67392	8.01115	8.34838	7.41393e-4	1.75021e-6	0.0160724	1.52143e-4
chr18	76418465	76418565	7179304	0	-	0.43	(0.419,0.45]	chr18	730080	378	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	1	1128	2	6.56987	8.0107	9.45153	1.10883e-4	7.13318e-8	0.00587344	1.89856e-5
chr1	90824076	90824175	524368	0	-	0.424242	(0.419,0.45]	chr1	61741	156	INTRON	INTRON	LINC02609	ENSG00000233593.11	ENST00000671059.1:ENST00000659034.2:ENST00000669273.1:ENST00000657053.2:ENST00000635581.3:ENST00000634619.2:ENST00000668679.1:ENST00000435649.3:ENST00000653770.2	lncRNA	lncRNA	lncRNA	lncRNA	0	423	2	7.73024	8.01014	8.29004	2.8749e-4	1.39662e-5	0.00964028	6.48662e-4
chr4	1324205	1324302	1995280	0	+	0.525773	(0.523,0.58]	chr4	203264	2	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	407	2	7.61828	8.010010000000001	8.40174	4.75424e-4	5.14041e-7	0.0125953	6.74657e-5
chr17	2679609	2679701	6667326	0	+	0.391304	(0.39,0.419]	chr17	667991	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000397195.10:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000397193.7:ENST00000574468.1:ENST00000571495.2:ENST00000675574.1:ENST00000675385.1:ENST00000675084.1:ENST00000610190.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	407	2	7.87719	8.00785	8.13851	5.03322e-4	3.34519e-6	0.0130134	2.37452e-4
chr13	113057299	113057398	5656210	0	+	0.585859	(0.58,1]	chr13	555189	25	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	399	2	7.70548	8.007545	8.30961	3.07459e-5	1.6179e-6	0.00310406	1.43996e-4
chr15	28217492	28217591	6207146	0	-	0.535354	(0.523,0.58]	chr15	611111	13	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	0	398	2	7.97032	8.00703	8.04374	2.30252e-4	1.6997e-6	0.00855862	1.48831e-4
chr5	14348898	14348998	2385421	0	+	0.46	(0.45,0.485]	chr5	238535	118	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000512070.6:ENST00000509967.6:ENST00000513206.5:ENST00000515144.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	402	2	7.81594	8.00638	8.19682	3.94969e-4	1.53676e-6	0.0113656	1.3934e-4
chr20	34072730	34072830	7460399	0	+	0.4	(0.39,0.419]	chr20	776606	4	SS5_PROX	SS5_PROX:INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000413297.5:ENST00000246194.8:ENST00000333552.9:ENST00000442805.1:ENST00000493399.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	439	2	7.34535	8.005605	8.66586	0.00137273	6.50138e-7	0.0226204	7.91791e-5
chr22	25456758	25456858	7701108	0	+	0.55	(0.523,0.58]	chr22	805960	1	SS3_PROX	SS3_PROX:INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000382734.10:ENST00000686640.1:ENST00000509460.3:ENST00000415709.6:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	412	2	7.70616	8.00485	8.30354	1.14562e-4	5.14768e-6	0.00596205	3.22346e-4
chr14	68899473	68899572	5999334	0	-	0.545455	(0.523,0.58]	chr14	588704	54	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	429	2	7.52398	8.004265	8.48455	7.80938e-5	9.2742e-6	0.00492356	4.87501e-4
chr2	239281177	239281277	1391520	0	-	0.45	(0.419,0.45]	chr2	148740	296	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	427	2	7.47796	8.00308	8.5282	0.0013011	1.25965e-6	0.0220198	1.22073e-4
chr13	113057997	113058097	5656217	0	+	0.5	(0.485,0.523]	chr13	555189	32	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	409	2	7.74008	8.00248	8.26488	1.22728e-4	4.97573e-6	0.00615337	3.148e-4
chr11	70815166	70815266	5062435	0	-	0.51	(0.485,0.523]	chr11	492713	76	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	404	2	7.82113	8.002245	8.18336	1.45715e-4	3.82538e-6	0.00674114	2.62442e-4
chr4	3368581	3368681	2005122	0	+	0.6	(0.58,1]	chr4	204663	252	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	384	2	7.76596	8.001819999999999	8.23768	1.12977e-4	2.33553e-7	0.00593499	4.03542e-5
chr9	137780708	137780806	4266116	0	+	0.55102	(0.523,0.58]	chr9	407438	6	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	397	2	7.80889	8.001290000000001	8.19369	3.21619e-4	1.03241e-6	0.010233	1.06505e-4
chr6	169649775	169649872	3304361	0	-	0.536082	(0.523,0.58]	chr6	319869	1	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	397	2	7.99008	8.00073	8.01138	2.11395e-4	2.02984e-6	0.0082187	1.68215e-4
chr13	112872782	112872879	5654400	0	+	0.525773	(0.523,0.58]	chr13	555052	6	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000471555.5:ENST00000415301.2:ENST00000419631.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	401	2	7.67048	7.999995	8.32951	4.27349e-4	6.5531e-7	0.0118572	7.93487e-5
chr2	3299592	3299692	1081103	0	-	0.42	(0.419,0.45]	chr2	117633	169	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	412	2	7.85144	7.999215	8.14699	3.76722e-4	9.75115e-6	0.011139	5.04053e-4
chr5	119503082	119503180	2518457	0	+	0.5	(0.485,0.523]	chr5	250154	6	INTRON	INTRON	HSD17B4	ENSG00000133835.18	ENST00000683936.1:ENST00000509514.6:ENST00000682996.1:ENST00000684214.1:ENST00000683974.1:ENST00000414835.7:ENST00000442060.7:ENST00000510025.7:ENST00000515320.5:ENST00000646058.1:ENST00000682445.1:ENST00000515235.6:ENST00000518349.6:ENST00000683371.1:ENST00000683390.1:ENST00000645832.1:ENST00000644146.1:ENST00000646355.1:ENST00000647335.1:ENST00000682531.1:ENST00000683265.1:ENST00000646554.1:ENST00000684160.1:ENST00000682626.1:ENST00000647342.1:ENST00000643250.1:ENST00000645099.1:ENST00000684131.1:ENST00000513628.5:ENST00000683549.1:ENST00000645702.1:ENST00000683996.1:ENST00000683372.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	397	2	7.80154	7.999180000000001	8.19682	3.22875e-4	1.11381e-6	0.0102338	1.1161e-4
chr12	132950463	132950562	5542036	0	-	0.525253	(0.523,0.58]	chr12	547064	18	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	399	2	7.71259	7.999115	8.28564	3.92044e-4	7.59161e-7	0.0113511	8.76878e-5
chr16	50341876	50341975	6587931	0	-	0.454545	(0.45,0.485]	chr16	658565	14	INTRON	INTRON	BRD7	ENSG00000166164.16	ENST00000394688.8:ENST00000394689.2:ENST00000475877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	400	2	7.80049	7.998655	8.19682	4.0738e-4	1.53676e-6	0.011566	1.3934e-4
chr13	94030993	94031093	5625824	0	+	0.57	(0.523,0.58]	chr13	553070	27	INTRON	INTRON	GPC6	ENSG00000183098.11	ENST00000377047.9	protein_coding	protein_coding	protein_coding	protein_coding	0	409	2	7.51737	7.996745	8.47612	5.83644e-4	4.0004e-7	0.0141349	5.72763e-5
chr20	64269995	64270094	7511212	0	+	0.626263	(0.58,1]	chr20	783907	16	INTRON	INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609818.1	protein_coding	protein_coding	protein_coding	protein_coding	1	855	2	6.4749	7.99646	9.51802	1.55439e-6	4.0905e-7	9.73457e-4	5.80223e-5
chr20	58688648	58688748	7498564	0	+	0.43	(0.419,0.45]	chr20	781977	93	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1:ENST00000413559.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	1	914	2	6.84513	7.99629	9.14745	5.53063e-5	9.20912e-7	0.0041259	9.90613e-5
chr3	37306428	37306527	1442038	0	+	0.434343	(0.419,0.45]	chr3	153834	37	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	451	2	7.40775	7.996195	8.58464	1.63984e-4	3.58484e-5	0.00716963	0.00128261
chr19	1170637	1170737	7305759	0	-	0.54	(0.523,0.58]	chr19	753058	16	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	399	2	7.8679	7.994820000000001	8.12174	1.67878e-4	3.03516e-6	0.00724399	2.2176e-4
chr16	1738027	1738126	6371319	0	+	0.575758	(0.523,0.58]	chr16	628851	26	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	396	2	7.76154	7.994375	8.22721	3.54552e-4	9.231e-7	0.0107472	9.90613e-5
chr12	132536850	132536949	5352984	0	+	0.454545	(0.45,0.485]	chr12	523670	85	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	402	2	7.68749	7.993765	8.30004	5.10466e-4	1.09994e-6	0.0131229	1.11149e-4
chr5	856575	856674	2607920	0	-	0.515152	(0.485,0.523]	chr5	259417	56	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	0	425	2	7.33574	7.993175000000001	8.65061	8.33022e-4	2.43974e-7	0.0171427	4.12107e-5
chr14	94308944	94309041	6046262	0	-	0.381443	(0.36,0.39]	chr14	593049	24	INTRON	INTRON	SERPINA6	ENSG00000170099.6	ENST00000341584.4:ENST00000555056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	402	2	7.92167	7.991705	8.06174	4.45045e-4	4.17502e-6	0.0121471	2.78577e-4
chr18	79146547	79146646	7097715	0	+	0.626263	(0.58,1]	chr18	722822	23	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000586672.5:ENST00000590271.5:ENST00000490210.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	384	2	7.67219	7.991645	8.3111	1.40886e-4	1.78094e-7	0.00661039	3.37968e-5
chr5	1103604	1103704	2608887	0	-	0.53	(0.523,0.58]	chr5	259667	90	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	0	402	2	7.7803	7.990545	8.20079	1.42232e-4	4.04324e-6	0.0066525	2.73258e-4
chr2	134450738	134450838	898755	0	+	0.51	(0.485,0.523]	chr2	101298	20	UTR3	UTR3:EXON_MRNA	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	6	4566	2	7.47753	7.9885649999999995	8.4996	7.25113e-7	1.32041e-9	7.94453e-4	1.57275e-6
chr4	1324008	1324108	1995278	0	+	0.51	(0.485,0.523]	chr4	203263	4	SS5_PROX	SS5_PROX:INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	397	2	7.6879	7.98813	8.28836	4.07903e-4	8.21789e-7	0.0115728	9.23185e-5
chr16	22423913	22424013	6566803	0	-	0.48	(0.45,0.485]	chr16	655121	13	INTRON	INTRON	CDR2:RRN3P3	ENSG00000140743.8:ENSG00000257122.5	ENST00000564542.5:ENST00000563573.5:ENST00000569045.1:ENST00000551766.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	3	1414	2	6.51075	7.987545	9.46434	1.30172e-5	1.27193e-7	0.00209785	2.71776e-5
chr17	72494358	72494457	6963244	0	-	0.484848	(0.45,0.485]	chr17	710350	57	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000648907.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000650483.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000647593.1:ENST00000649311.1:ENST00000648520.1:ENST00000649250.1:ENST00000648069.1:ENST00000647953.1:ENST00000648176.2:ENST00000648403.1:ENST00000649269.1:ENST00000577828.6:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1:ENST00000650510.1:ENST00000649013.1:ENST00000647850.1:ENST00000648500.1	lncRNA	lncRNA	lncRNA	lncRNA	0	397	2	7.77701	7.986915	8.19682	4.26981e-4	1.53676e-6	0.0118572	1.3934e-4
chr12	132951160	132951260	5542043	0	-	0.45	(0.419,0.45]	chr12	547064	25	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	409	2	7.65758	7.986765	8.31595	9.37054e-4	2.4091e-6	0.0183114	1.89153e-4
chr9	129498764	129498864	4250764	0	+	0.4	(0.39,0.419]	chr9	404725	3	SS5_PROX	SS5_PROX:INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	903	2	7.10625	7.9865200000000005	8.86679	7.26007e-5	3.33983e-7	0.00477445	5.08994e-5
chr2	239346083	239346183	1392171	0	-	0.49	(0.485,0.523]	chr2	148752	216	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	1028	2	6.50487	7.986260000000001	9.46765	5.76939e-5	1.49889e-8	0.00421984	6.85919e-6
chr17	80634261	80634361	6809797	0	+	0.55	(0.523,0.58]	chr17	687816	81	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	395	2	7.70426	7.985345	8.26643	3.98791e-4	8.09622e-7	0.0114313	9.13796e-5
chr8	13196067	13196167	3940468	0	-	0.41	(0.39,0.419]	chr8	376715	627	INTRON	INTRON	DLC1	ENSG00000164741.15	ENST00000276297.9:ENST00000512044.6:ENST00000509922.5:ENST00000503161.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	417	2	7.65512	7.98467	8.31422	2.15982e-4	1.44991e-5	0.00831529	6.65866e-4
chr21	46403279	46403378	7633012	0	+	0.636364	(0.58,1]	chr21	798231	4	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5	protein_coding	protein_coding	protein_coding	protein_coding	0	386	2	7.58132	7.984235	8.38715	1.74291e-4	1.34369e-7	0.00740243	2.8138e-5
chr19	8248632	8248731	7200370	0	+	0.50505	(0.485,0.523]	chr19	734198	68	INTRON	INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	418	2	7.55236	7.98382	8.41528	8.92774e-5	9.10085e-6	0.00524798	4.79891e-4
chr19	47229044	47229143	7392372	0	-	0.535354	(0.523,0.58]	chr19	768106	2	INTRON	INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	1	845	2	7.03165	7.980155	8.92866	3.01994e-5	1.6805e-7	0.00309439	3.25988e-5
chr11	70658329	70658428	5060858	0	-	0.515152	(0.485,0.523]	chr11	492672	35	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	395	2	7.85575	7.979525000000001	8.1033	0.00017237400000000001	3.41783e-6	0.00734201	2.41689e-4
chr1	113396212	113396311	211250	0	+	0.343434	(0.33,0.36]	chr1	23355	45	INTRON	INTRON	MAGI3	ENSG00000081026.19	ENST00000307546.14:ENST00000369617.8:ENST00000369615.5:ENST00000369611.4:ENST00000486456.1:ENST00000477955.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	426	2	7.50454	7.97943	8.45432	1.15426e-4	1.80296e-5	0.00597906	7.82415e-4
chr21	45452224	45452324	7630785	0	+	0.54	(0.523,0.58]	chr21	797656	464	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	395	2	7.65329	7.97895	8.30461	4.42635e-4	7.1241e-7	0.0121006	8.36689e-5
chr8	127910807	127910907	3918961	0	+	0.49	(0.485,0.523]	chr8	374216	79	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000521122.2:ENST00000520913.2:ENST00000519481.6:ENST00000651568.1:ENST00000669082.1:ENST00000665166.1:ENST00000656948.1:ENST00000671088.1:ENST00000664924.1:ENST00000670204.1:ENST00000652695.1:ENST00000670602.1:ENST00000651664.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1:ENST00000653406.1	lncRNA	lncRNA	lncRNA	lncRNA	0	393	2	7.90616	7.9789449999999995	8.05173	1.92016e-4	2.89951e-6	0.00780212	2.14994e-4
chrX	2224827	2224927	7966086	0	-	0.48	(0.45,0.485]	chrX	834328	32	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11	protein_coding	protein_coding	protein_coding	protein_coding	0	395	2	7.92539	7.97755	8.02971	2.56715e-4	3.67453e-6	0.00907079	2.55326e-4
chr11	61271860	61271960	5041294	0	-	0.39	(0.36,0.39]	chr11	488755	1	SS3_PROX	SS3_PROX:INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10:ENST00000535710.1:ENST00000398808.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	895	2	6.7227	7.976375	9.23005	3.33829e-5	1.10982e-6	0.00320976	1.11442e-4
chr2	233165722	233165822	1058283	0	+	0.47	(0.45,0.485]	chr2	115120	9	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493078.1:ENST00000472517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	392	2	7.84634	7.973185	8.10003	3.71603e-4	2.0999e-6	0.0110758	1.72118e-4
chr4	101292131	101292231	2292600	0	-	0.42	(0.419,0.45]	chr4	230565	509	INTRON	INTRON	PPP3CA	ENSG00000138814.17	ENST00000512215.5:ENST00000394854.8:ENST00000323055.10:ENST00000394853.8:ENST00000507176.5:ENST00000529324.5:ENST00000525819.1	protein_coding	protein_coding	protein_coding	protein_coding	0	402	2	7.89237	7.973095	8.05382	4.48848e-4	8.6322e-6	0.0121771	4.62143e-4
chr16	85374542	85374642	6516816	0	+	0.63	(0.58,1]	chr16	646391	152	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	405	2	7.49246	7.971125000000001	8.44979	2.18699e-5	3.45114e-6	0.0027064	2.43327e-4
chr12	50436024	50436124	5228999	0	+	0.48	(0.45,0.485]	chr12	507636	4	SS5_PROX	SS5_PROX:INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1	protein_coding	protein_coding	protein_coding	protein_coding	0	397	2	7.81644	7.97111	8.12578	2.11215e-4	5.19579e-6	0.00821527	3.24753e-4
chrX	48818612	48818712	7879398	0	+	0.55	(0.523,0.58]	chrX	826247	2	SS5_PROX	SS5_PROX:INTRON	HDAC6	ENSG00000094631.21	ENST00000376619.6:ENST00000477528.5:ENST00000334136.11:ENST00000643659.1:ENST00000643374.1:ENST00000644068.1:ENST00000643934.1:ENST00000647398.1:ENST00000486227.5:ENST00000645643.1:ENST00000486665.5:ENST00000470942.1:ENST00000480525.5:ENST00000498808.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	389	2	7.95049	7.97074	7.99099	2.2056e-4	2.31313e-6	0.00839442	1.84376e-4
chr8	726558	726658	3932996	0	-	0.5	(0.485,0.523]	chr8	376060	102	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	388	2	7.81707	7.9688300000000005	8.12059	3.12689e-4	1.43338e-6	0.0100453	1.3278e-4
chr6	137869325	137869424	3010380	0	+	0.484848	(0.45,0.485]	chr6	294494	12	INTRON	INTRON	TNFAIP3	ENSG00000118503.16	ENST00000421450.1:ENST00000612899.5:ENST00000420009.5:ENST00000237289.8:ENST00000433680.1	protein_coding	protein_coding	protein_coding	protein_coding	0	400	2	7.73589	7.967085000000001	8.19828	1.82198e-4	6.70327e-6	0.00759001	3.88203e-4
chr17	7176685	7176757	6847838	0	-	0.486111	(0.485,0.523]	chr17	693459	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1:ENST00000573596.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	2200	2	7.68191	7.96699	8.25207	4.4236e-6	2.68646e-9	0.00129297	2.41273e-6
chr10	103701409	103701508	4757114	0	-	0.464646	(0.45,0.485]	chr10	454791	79	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	405	2	7.66031	7.966614999999999	8.27292	1.56411e-4	8.50368e-6	0.00697415	4.57175e-4
chr5	14349097	14349197	2385423	0	+	0.44	(0.419,0.45]	chr5	238535	120	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000512070.6:ENST00000509967.6:ENST00000513206.5:ENST00000515144.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	400	2	7.71551	7.96591	8.21631	8.42277e-4	3.26003e-6	0.0172456	2.33181e-4
chr11	70685906	70686006	5061138	0	-	0.54	(0.523,0.58]	chr11	492688	159	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	404	2	7.62802	7.9657800000000005	8.30354	1.14562e-4	6.63212e-6	0.00596205	3.85278e-4
chr17	7175351	7175448	6847824	0	-	0.505155	(0.485,0.523]	chr17	693457	5	INTRON	INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	2	2211	2	7.78262	7.96483	8.14704	3.54314e-6	3.87368e-9	0.00120797	2.91735e-6
chr7	47362885	47362985	3587420	0	-	0.44	(0.419,0.45]	chr7	346030	162	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	403	2	7.80074	7.964785000000001	8.12883	3.89828e-4	1.13359e-5	0.0113348	5.61766e-4
chr3	195112552	195112652	1981136	0	-	0.57	(0.523,0.58]	chr3	201655	185	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000437101.5:ENST00000473200.1:ENST00000429994.5:ENST00000356740.5:ENST00000418940.5:ENST00000491138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	392	2	7.61828	7.964575	8.31087	4.75424e-4	6.97596e-7	0.0125953	8.26807e-5
chr4	1323908	1324008	1995277	0	+	0.48	(0.45,0.485]	chr4	203263	3	SS5_PROX	SS5_PROX:INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	396	2	7.60988	7.96424	8.3186	5.955e-4	1.03559e-6	0.0143364	1.06767e-4
chr16	1739898	1739997	6371338	0	+	0.616162	(0.58,1]	chr16	628851	45	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	777	2	7.12708	7.963240000000001	8.7994	9.28304e-6	3.55452e-8	0.00182685	1.19633e-5
chr11	128460060	128460160	5140365	0	-	0.47	(0.45,0.485]	chr11	499688	14	UTR3	UTR3:EXON_MRNA	ETS1	ENSG00000134954.14	ENST00000535549.5:ENST00000392668.8	protein_coding	protein_coding	protein_coding	protein_coding	0	521	2	6.89879	7.96287	9.02695	8.68871e-5	3.27268e-5	0.00320213	0.00246367
chr19	35001344	35001444	7244871	0	+	0.48	(0.45,0.485]	chr19	742062	1	SS5_PROX	SS5_PROX:INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	402	2	7.67958	7.9621249999999995	8.24467	1.65721e-4	8.00408e-6	0.00722431	4.37868e-4
chr21	46403872	46403970	7633018	0	+	0.571429	(0.523,0.58]	chr21	798231	10	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5	protein_coding	protein_coding	protein_coding	protein_coding	0	401	2	7.4592	7.962059999999999	8.46492	6.56487e-4	4.15446e-7	0.0150669	5.86817e-5
chr12	23759001	23759100	5386609	0	-	0.434343	(0.419,0.45]	chr12	528170	29	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000537393.5:ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	410	2	7.49696	7.961469999999999	8.42598	0.00125692	1.72253e-6	0.0215793	1.50516e-4
chr12	124005435	124005534	5348442	0	+	0.383838	(0.36,0.39]	chr12	523067	1	INTRON	INTRON	ZNF664	ENSG00000179195.16	ENST00000537532.5:ENST00000539644.5:ENST00000392404.7:ENST00000538932.6:ENST00000337815.9:ENST00000541448.5:ENST00000542493.5:ENST00000543017.5:ENST00000546098.5:ENST00000539501.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	396	2	7.88526	7.961245	8.03723	3.55849e-4	7.15307e-6	0.0107631	4.07092e-4
chr6	20424324	20424424	2863225	0	+	0.48	(0.45,0.485]	chr6	279635	201	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	0	403	2	7.47046	7.959149999999999	8.44784	7.83923e-4	6.79656e-7	0.0166116	8.13055e-5
chr5	175881436	175881536	2594669	0	+	0.4	(0.39,0.419]	chr5	257471	15	UTR3	UTR3:EXON_MRNA	CPLX2	ENSG00000145920.15	ENST00000359546.8:ENST00000393745.8	protein_coding	protein_coding	protein_coding	protein_coding	1	1296	2	7.6655	7.955205	8.24491	7.53311e-4	8.60217e-9	0.0162173	4.7523e-6
chr16	89429556	89429656	6661129	0	-	0.54	(0.523,0.58]	chr16	666747	108	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	880	2	7.44038	7.95514	8.4699	8.05624e-5	4.10389e-8	0.00498873	1.31784e-5
chr10	127261723	127261823	4610544	0	+	0.56	(0.523,0.58]	chr10	440799	39	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2:ENST00000484400.5:ENST00000464466.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	868	2	7.37767	7.95501	8.53235	7.05476e-5	5.09929e-8	0.00470747	1.5403e-5
chr13	113058496	113058595	5656222	0	+	0.50505	(0.485,0.523]	chr13	555189	37	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	393	2	7.71201	7.950675	8.18934	1.43895e-4	5.44828e-6	0.00669515	3.35909e-4
chr10	132756172	132756272	4619034	0	+	0.47	(0.45,0.485]	chr10	441201	23	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	0	388	2	7.70419	7.950505	8.19682	4.93779e-4	1.53676e-6	0.0129014	1.3934e-4
chr8	122887026	122887126	3910716	0	+	0.53	(0.523,0.58]	chr8	373489	231	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6:ENST00000534247.1	protein_coding	protein_coding	protein_coding	protein_coding	1	932	2	6.21135	7.948895	9.68644	5.82612e-6	2.69995e-6	0.00146719	2.03979e-4
chr13	113056700	113056800	5656204	0	+	0.56	(0.523,0.58]	chr13	555189	19	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	395	2	7.66762	7.948845	8.23007	1.3374e-4	5.83386e-6	0.00642129	3.51962e-4
chr16	16124288	16124388	6407775	0	+	0.47	(0.45,0.485]	chr16	633165	1	SS3_PROX	SS3_PROX:INTRON	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000676806.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	391	2	7.79009	7.94858	8.10707	2.19409e-4	5.64815e-6	0.00837681	3.44583e-4
chr1	43593199	43593298	107382	0	+	0.575758	(0.523,0.58]	chr1	13240	2	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	1	826	2	6.97177	7.94843	8.92509	3.04329e-5	2.06349e-7	0.00310406	3.71441e-5
chr5	653982	654079	2378823	0	+	0.57732000000000006	(0.523,0.58]	chr5	237653	4	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000499639.2	protein_coding	processed_transcript	protein_coding	processed_transcript	0	385	2	7.66191	7.947865	8.23382	4.34904e-4	9.02928e-7	0.0119405	9.79607e-5
chr20	47257605	47257704	7569890	0	-	0.30303	(0.29,0.33]	chr20	791018	78	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	384	2	7.70327	7.9473199999999995	8.19137	3.31771e-4	1.29155e-6	0.0103819	1.24117e-4
chr17	80024401	80024501	6982160	0	-	0.49	(0.485,0.523]	chr17	713081	104	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7	protein_coding	protein_coding	protein_coding	protein_coding	0	385	2	7.67091	7.947240000000001	8.22357	4.22356e-4	1.01923e-6	0.011772	1.0586e-4
chr5	139652564	139652664	2549686	0	+	0.4	(0.39,0.419]	chr5	253168	10	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	0	390	2	7.84026	7.947094999999999	8.05393	5.40187e-4	4.33552e-6	0.0135788	2.84538e-4
chr20	63733118	63733218	7509370	0	+	0.65	(0.58,1]	chr20	783517	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	381	2	7.46412	7.946925	8.42973	2.28899e-4	1.14717e-7	0.00852546	2.57534e-5
chr14	91221537	91221634	5899572	0	+	0.494845	(0.485,0.523]	chr14	576435	9	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	383	2	7.73771	7.946725	8.15574	3.68253e-4	1.27613e-6	0.0110278	1.23031e-4
chr6	166930743	166930843	3301784	0	-	0.5	(0.485,0.523]	chr6	319710	3	SS5_PROX	SS5_PROX:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000510083.1:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000467705.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	1317	2	5.42708	7.94654	10.466	3.6329e-5	1.02932e-6	0.00129815	8.39394e-4
chr11	70811468	70811568	5062398	0	-	0.51	(0.485,0.523]	chr11	492713	39	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	383	2	7.90616	7.945365	7.98457	2.20906e-4	2.89951e-6	0.00839442	2.14994e-4
chr18	79145453	79145552	7097704	0	+	0.626263	(0.58,1]	chr18	722822	12	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000586672.5:ENST00000590271.5:ENST00000490210.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	369	2	7.71557	7.945135	8.1747	1.27227e-4	2.9449e-7	0.00624469	4.66588e-5
chr4	1324108	1324205	1995279	0	+	0.474227	(0.45,0.485]	chr4	203264	1	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	388	2	7.65351	7.944955	8.2364	5.46137e-4	1.35206e-6	0.0136476	1.28072e-4
chr1	154607691	154607791	594190	0	-	0.49	(0.485,0.523]	chr1	69507	3	SS5_PROX	SS5_PROX:INTRON	ADAR	ENSG00000160710.18	ENST00000681056.1:ENST00000680270.1:ENST00000679375.1:ENST00000679899.1:ENST00000681901.1:ENST00000648714.2:ENST00000681235.1:ENST00000647682.2:ENST00000368474.9:ENST00000680305.1:ENST00000368471.8:ENST00000648231.2:ENST00000649022.2:ENST00000681786.1:ENST00000679465.1:ENST00000679805.1:ENST00000649408.2:ENST00000649042.1:ENST00000649724.1:ENST00000648311.1:ENST00000649749.1:ENST00000649021.1:ENST00000529168.2:ENST00000681683.1:ENST00000648871.1:ENST00000463920.5:ENST00000680472.1:ENST00000471068.2:ENST00000494866.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	382	2	7.94271	7.9447849999999995	7.94686	2.41011e-4	2.5381e-6	0.00876609	1.95444e-4
chr2	38325507	38325607	1123815	0	-	0.4	(0.39,0.419]	chr2	123019	61	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	391	2	7.72343	7.94453	8.16563	6.7492e-4	3.07756e-6	0.0153083	2.23711e-4
chr11	64146754	64146853	5049045	0	-	0.494949	(0.485,0.523]	chr11	490257	200	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	400	2	7.39901	7.94406	8.48911	7.33641e-4	4.20114e-7	0.0159757	5.90925e-5
chr3	13199926	13200026	1691141	0	-	0.48	(0.45,0.485]	chr3	176566	354	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	384	2	7.81594	7.943535000000001	8.07113	3.94969e-4	2.30435e-6	0.0113656	1.83939e-4
chr13	113056301	113056401	5656200	0	+	0.54	(0.523,0.58]	chr13	555189	15	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	404	2	7.53473	7.943515	8.3523	1.03353e-4	8.95943e-6	0.0056665	4.75569e-4
chr19	15642610	15642709	7215379	0	+	0.545455	(0.523,0.58]	chr19	737133	6	INTRON	INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	461	2	7.11514	7.942685	8.77023	4.24455e-5	3.37828e-5	0.00362006	0.00122993
chr16	81626991	81627090	6509567	0	+	0.454545	(0.45,0.485]	chr16	645926	49	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	2	1190	2	5.99719	7.94261	9.88803	5.29158e-6	1.56203e-6	0.00140397	1.40814e-4
chr16	1737535	1737633	6371314	0	+	0.55102	(0.523,0.58]	chr16	628851	21	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	384	2	7.64461	7.942505	8.2404	4.50547e-4	8.8328e-7	0.0121972	9.69154e-5
chr11	121478942	121479042	4953922	0	+	0.63	(0.58,1]	chr11	478664	3	INTRON	INTRON	SORL1	ENSG00000137642.13	ENST00000260197.12:ENST00000532451.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	876	2	6.21585	7.94247	9.66909	1.06398e-6	1.06069e-6	8.39394e-4	1.08356e-4
chr13	113537963	113538062	5658661	0	+	0.434343	(0.419,0.45]	chr13	555722	28	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	391	2	7.89097	7.94231	7.99365	6.0852e-4	6.37722e-6	0.0144778	3.74355e-4
chr13	113057398	113057498	5656211	0	+	0.57	(0.523,0.58]	chr13	555189	26	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	390	2	7.70616	7.94154	8.17692	1.4954e-4	5.14768e-6	0.00681825	3.22346e-4
chr2	216030889	216030989	1369593	0	-	0.48	(0.45,0.485]	chr2	145850	174	INTRON	INTRON	MREG:PECR	ENSG00000118242.16:ENSG00000115425.14	ENST00000439791.5:ENST00000424992.5:ENST00000420348.1:ENST00000442122.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	965	2	6.12266	7.940405	9.75815	6.97751e-6	4.79548e-6	0.00158617	3.06695e-4
chr2	239084642	239084742	1389521	0	-	0.56	(0.523,0.58]	chr2	148604	4	SS3_PROX	SS3_PROX:INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000487617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	380	2	7.92089	7.939695	7.9585	2.55138e-4	2.25287e-6	0.00904796	1.80805e-4
chr21	43974965	43975065	7625541	0	+	0.54	(0.523,0.58]	chr21	796959	31	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000398063.6:ENST00000398058.5:ENST00000546158.1:ENST00000479117.5:ENST00000467358.5:ENST00000484865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	381	2	7.70426	7.93873	8.1732	3.98791e-4	1.10543e-6	0.0114313	1.11364e-4
chr2	159265224	159265323	1287683	0	-	0.525253	(0.523,0.58]	chr2	138404	50	INTRON	INTRON	WDSUB1	ENSG00000196151.11	ENST00000359774.9:ENST00000358147.8:ENST00000409990.7:ENST00000392796.7:ENST00000409124.1	protein_coding	protein_coding	protein_coding	protein_coding	0	415	2	7.41185	7.938415000000001	8.46498	8.1408e-5	1.32752e-5	0.00501199	6.28604e-4
chr22	32671458	32671558	7791373	0	-	0.55	(0.523,0.58]	chr22	817442	412	INTRON	INTRON	SYN3	ENSG00000185666.15	ENST00000358763.7:ENST00000462268.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	419	2	7.18788	7.93811	8.68834	0.00112897	1.94865e-7	0.0202727	3.58846e-5
chr17	3641962	3642061	6670312	0	+	0.585859	(0.58,1]	chr17	668175	13	INTRON	INTRON	CTNS	ENSG00000040531.16	ENST00000381870.8:ENST00000673965.1:ENST00000452111.5:ENST00000673669.1:ENST00000574776.6:ENST00000488623.6:ENST00000495445.5:ENST00000467663.5:ENST00000046640.9:ENST00000574218.1:ENST00000399306.7:ENST00000576979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	366	2	7.78238	7.938085	8.09379	1.08681e-4	3.96253e-7	0.00582254	5.6977e-5
chr2	171015448	171015546	1312713	0	-	0.367347	(0.36,0.39]	chr2	140568	1	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	396	2	7.71201	7.937155000000001	8.1623	2.78959e-4	1.20737e-5	0.00949286	5.87067e-4
chr16	75234123	75234211	6644447	0	-	0.579545	(0.523,0.58]	chr16	664405	2	SS3_PROX	SS3_PROX:INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000566982.1:ENST00000563038.5:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	379	2	7.89917	7.936775	7.97438	2.66882e-4	2.13789e-6	0.0092576	1.744e-4
chr10	132596722	132596822	4617428	0	+	0.52	(0.485,0.523]	chr10	441139	582	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	380	2	7.74584	7.936764999999999	8.12769	3.62142e-4	1.40015e-6	0.0108921	1.3093e-4
chr20	33009083	33009183	7457379	0	+	0.56	(0.523,0.58]	chr20	776364	4	SS5_PROX	SS5_PROX:INTRON	BPIFB2	ENSG00000078898.7	ENST00000170150.4	protein_coding	protein_coding	protein_coding	protein_coding	1	821	2	6.81777	7.9364550000000005	9.05514	2.29902e-5	3.49288e-7	0.00276344	5.22364e-5
chr16	1737338	1737436	6371312	0	+	0.591837	(0.58,1]	chr16	628851	19	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	368	2	7.65447	7.9357299999999995	8.21699	1.46869e-4	2.52054e-7	0.00675599	4.21208e-5
chr17	2183780	2183879	6833792	0	-	0.555556	(0.523,0.58]	chr17	691085	106	INTRON	INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11:ENST00000354901.8:ENST00000536871.6:ENST00000572369.5:ENST00000575176.5:ENST00000572205.5:ENST00000571442.5:ENST00000570659.5:ENST00000575663.5	protein_coding	protein_coding	protein_coding	protein_coding	0	385	2	7.76212	7.935655000000001	8.10919	1.72348e-4	4.29035e-6	0.00734201	2.82813e-4
chr1	48227363	48227462	120973	0	+	0.50505	(0.485,0.523]	chr1	15165	22	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	823	2	7.01055	7.93506	8.85957	3.45346e-5	1.95348e-7	0.00326132	3.59341e-5
chr1	3470754	3470849	5816	0	+	0.642105	(0.58,1]	chr1	1229	8	INTRON	INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5	protein_coding	protein_coding	protein_coding	protein_coding	0	409	2	7.33496	7.934775	8.53459	1.77818e-5	5.99783e-6	0.00242017	3.5765e-4
chr5	649806	649905	2378780	0	+	0.585859	(0.58,1]	chr5	237646	15	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	370	2	7.59067	7.934430000000001	8.27819	1.70527e-4	2.01127e-7	0.00729818	3.6561e-5
chr16	81525986	81526086	6508553	0	+	0.45	(0.419,0.45]	chr16	645911	301	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	408	2	7.56792	7.934405	8.30089	2.81635e-4	2.25033e-5	0.00953601	9.16205e-4
chr9	131586457	131586554	4418981	0	-	0.556701	(0.523,0.58]	chr9	421909	15	INTRON	INTRON	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000372189.7:ENST00000683357.1:ENST00000372190.7	protein_coding	protein_coding	protein_coding	protein_coding	0	396	2	7.5873	7.934315	8.28133	1.20056e-4	7.56432e-6	0.00607292	4.21779e-4
chr17	43545914	43546014	6739024	0	+	0.6	(0.58,1]	chr17	678633	7	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	1043	2	6.19818	7.933635000000001	9.66909	1.06398e-6	1.96644e-7	8.39394e-4	3.60542e-5
chr19	1409727	1409823	7187443	0	+	0.65625	(0.58,1]	chr19	731282	16	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	368	2	7.83785	7.93356	8.02927	6.04079e-5	1.0051e-6	0.0043082	1.05275e-4
chr7	47525736	47525836	3589070	0	-	0.51	(0.485,0.523]	chr7	346138	184	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	385	2	7.74931	7.93261	8.11591	1.67879e-4	4.82922e-6	0.00724399	3.08032e-4
chr9	137781200	137781298	4266121	0	+	0.622449	(0.58,1]	chr9	407438	11	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	366	2	7.6897	7.9322	8.1747	1.35209e-4	2.9449e-7	0.00645702	4.66588e-5
chrX	2393572	2393672	7967780	0	-	0.65	(0.58,1]	chrX	834361	7	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	365	2	7.92547	7.9312249999999995	7.93698	7.5303e-5	7.319e-7	0.00484351	8.52139e-5
chr16	23389386	23389486	6567869	0	-	0.49	(0.485,0.523]	chr16	655260	3	SS3_PROX	SS3_PROX:INTRON	COG7	ENSG00000168434.13	ENST00000307149.10:ENST00000566364.1:ENST00000561854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	392	2	7.62439	7.93034	8.23629	1.30353e-4	7.22501e-6	0.00633355	4.09005e-4
chr10	14558201	14558300	4633239	0	-	0.545455	(0.523,0.58]	chr10	442809	14	INTRON	INTRON	FAM107B	ENSG00000065809.14	ENST00000181796.7:ENST00000622567.4:ENST00000468747.5:ENST00000378467.8:ENST00000487335.5:ENST00000378465.7:ENST00000378458.6:ENST00000378462.5:ENST00000479731.5:ENST00000468492.5:ENST00000452706.6:ENST00000488576.5:ENST00000442012.5:ENST00000482277.5:ENST00000472095.5:ENST00000471815.5:ENST00000464952.5:ENST00000495292.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	377	2	7.80111	7.92991	8.05871	3.26821e-4	1.61742e-6	0.0102955	1.43996e-4
chr17	40019182	40019268	6898786	0	-	0.534884	(0.523,0.58]	chr17	700878	2	UTR3	UTR3:EXON_MRNA	MED24	ENSG00000008838.21	ENST00000394126.5:ENST00000356271.7:ENST00000394128.7:ENST00000394127.6:ENST00000491466.5:ENST00000535508.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	1096	2	6.34106	7.929824999999999	9.51859	8.40603e-6	3.53127e-7	0.00175089	5.27167e-5
chr19	47229440	47229538	7392376	0	-	0.510204	(0.485,0.523]	chr19	768106	6	INTRON	INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	1	990	2	6.53268	7.929695000000001	9.32671	5.43365e-5	2.43502e-8	0.00408776	9.42287e-6
chr12	23950954	23951032	5388540	0	-	0.525641	(0.523,0.58]	chr12	528208	2	UTR5	UTR5:EXON_MRNA:INTRON	SOX5	ENSG00000134532.19	ENST00000646273.1:ENST00000545921.5:ENST00000659413.1:ENST00000441133.2:ENST00000536729.2:ENST00000446891.7	protein_coding	protein_coding	protein_coding	protein_coding	0	425	2	7.1144	7.929685	8.74497	0.00130498	1.6069e-7	0.0220198	3.15271e-5
chr4	3362100	3362199	2005057	0	+	0.59596	(0.58,1]	chr4	204663	187	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	366	2	7.8647	7.929584999999999	7.99447	6.56507e-5	9.12155e-7	0.00450202	9.84472e-5
chr11	497470	497570	4968421	0	-	0.59	(0.58,1]	chr11	480491	1	SS5_PROX	SS5_PROX:INTRON	RNH1	ENSG00000023191.17	ENST00000534797.5:ENST00000397614.5:ENST00000397604.7:ENST00000354420.7:ENST00000397615.6:ENST00000525522.5:ENST00000525701.5:ENST00000529768.5:ENST00000533410.5:ENST00000438658.6:ENST00000356187.9:ENST00000524464.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	772	2	7.26748	7.92953	8.59158	1.54677e-5	2.0868300000000002e-08	0.00225313	8.40466e-6
chr7	241703	241803	3306072	0	+	0.55	(0.523,0.58]	chr7	320161	324	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	381	2	7.61828	7.92934	8.2404	4.75424e-4	8.8328e-7	0.0125953	9.69154e-5
chr7	100634056	100634155	3654947	0	-	0.565657	(0.523,0.58]	chr7	352299	1	INTRON	INTRON	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	395	2	7.57693	7.929130000000001	8.28133	1.20056e-4	7.82132e-6	0.00607292	4.32234e-4
chr17	75687881	75687981	6799484	0	+	0.48	(0.45,0.485]	chr17	685907	157	INTRON	INTRON	SAP30BP	ENSG00000161526.15	ENST00000583170.5:ENST00000584667.6:ENST00000355423.7:ENST00000578354.5:ENST00000577292.5:ENST00000542343.5:ENST00000579877.5:ENST00000293208.13:ENST00000579864.5:ENST00000583737.5:ENST00000578288.5:ENST00000580484.5:ENST00000582022.5:ENST00000580322.5:ENST00000583536.5:ENST00000578909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	381	2	7.90915	7.928555	7.94796	3.0286e-4	3.86971e-6	0.00988096	2.64726e-4
chr19	3528511	3528610	7191583	0	+	0.626263	(0.58,1]	chr19	732249	3	INTRON	INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	373	2	7.69555	7.928089999999999	8.16063	4.40668e-5	1.6765e-6	0.00367146	1.47289e-4
chr16	1738126	1738224	6371320	0	+	0.591837	(0.58,1]	chr16	628851	27	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	368	2	7.59067	7.92774	8.26481	1.70527e-4	2.1131e-7	0.00729818	3.78344e-5
chr20	51600810	51600910	7577682	0	-	0.4	(0.39,0.419]	chr20	791738	44	UTR3	UTR3:EXON_MRNA	ATP9A	ENSG00000054793.14	ENST00000338821.6:ENST00000311637.9	protein_coding	protein_coding	protein_coding	protein_coding	1	1365	2	7.51488	7.925685	8.33649	1.33274e-5	1.81589e-6	0.00211935	1.55823e-4
chr14	89415773	89415872	6028267	0	-	0.464646	(0.45,0.485]	chr14	591480	29	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000555353.5:ENST00000555855.5:ENST00000555034.5:ENST00000553904.1	protein_coding	protein_coding	protein_coding	protein_coding	0	379	2	7.8236	7.925140000000001	8.02668	3.8895e-4	2.65779e-6	0.0113333	2.014e-4
chr2	119765880	119765979	883650	0	+	0.535354	(0.523,0.58]	chr2	100098	51	INTRON	INTRON	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000460162.1:ENST00000420482.5:ENST00000460289.5:ENST00000488279.6:ENST00000485247.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	1122	2	6.12197	7.92503	9.72809	5.31873e-6	7.45687e-7	0.00140527	8.64287e-5
chr14	94308847	94308944	6046261	0	-	0.43299	(0.419,0.45]	chr14	593049	23	INTRON	INTRON	SERPINA6	ENSG00000170099.6	ENST00000341584.4:ENST00000555056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	395	2	7.70289	7.92494	8.14699	3.76722e-4	1.51402e-5	0.011139	6.8895e-4
chr7	74365012	74365111	3390939	0	+	0.515152	(0.485,0.523]	chr7	327282	3	INTRON	INTRON	CLIP2	ENSG00000106665.16	ENST00000223398.11:ENST00000361545.9	protein_coding	protein_coding	protein_coding	protein_coding	0	376	2	7.84763	7.924804999999999	8.00198	2.93546e-4	2.11842e-6	0.00972826	1.73297e-4
chr7	1009049	1009149	3526313	0	-	0.64	(0.58,1]	chr7	340566	81	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	362	2	7.80665	7.923245	8.03984	1.02618e-4	4.82665e-7	0.00566453	6.46941e-5
chr19	437183	437277	7303559	0	-	0.56383	(0.523,0.58]	chr19	752509	1	INTRON	INTRON	SHC2	ENSG00000129946.11	ENST00000264554.11:ENST00000590222.5:ENST00000590113.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	422	2	7.1144	7.9227099999999995	8.73102	0.00130498	1.68513e-7	0.0220198	3.25988e-5
chr9	40106157	40106257	4309076	0	-	0.58	(0.523,0.58]	chr9	411930	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000284116	ENSG00000284116.1	ENST00000639363.1	lncRNA	lncRNA	lncRNA	lncRNA	0	383	2	7.71564	7.921810000000001	8.12798	1.657e-4	4.99148e-6	0.00722431	3.15032e-4
chr11	65085945	65086039	4869637	0	+	0.446809	(0.419,0.45]	chr11	467665	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ZFPL1	ENSG00000162300.13	ENST00000650243.1:ENST00000294258.8:ENST00000531761.5:ENST00000453524.6:ENST00000526334.5:ENST00000526440.1:ENST00000533216.1:ENST00000526945.5:ENST00000532200.1:ENST00000530488.1:ENST00000530744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	386	2	7.90041	7.920405000000001	7.9404	5.54971e-4	8.42749e-6	0.0137234	4.54808e-4
chr2	239372500	239372600	1392437	0	-	0.62	(0.58,1]	chr2	148759	192	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	361	2	7.80665	7.919305	8.03196	1.02618e-4	4.96742e-7	0.00566453	6.61061e-5
chr8	38452168	38452268	3968145	0	-	0.51	(0.485,0.523]	chr8	379315	83	INTRON	INTRON	FGFR1	ENSG00000077782.22	ENST00000649678.1:ENST00000397091.9:ENST00000619564.3:ENST00000447712.7:ENST00000341462.9:ENST00000532791.5:ENST00000674380.1:ENST00000674189.1:ENST00000683765.1:ENST00000425967.8:ENST00000683948.1:ENST00000397113.6:ENST00000356207.9:ENST00000335922.9:ENST00000683815.1:ENST00000684654.1:ENST00000326324.10:ENST00000674474.1:ENST00000397103.5:ENST00000397108.8:ENST00000487647.5:ENST00000530701.1:ENST00000470826.5:ENST00000683276.1:ENST00000683795.1:ENST00000496296.5:ENST00000527203.5:ENST00000533668.5:ENST00000525001.5:ENST00000526742.5:ENST00000529552.5:ENST00000484370.5:ENST00000530568.5:ENST00000434187.5:ENST00000397090.4:ENST00000413133.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	432	2	7.03741	7.918845000000001	8.80028	0.0015038	1.47041e-7	0.0239138	2.97529e-5
chr14	35623264	35623363	5959505	0	-	0.434343	(0.419,0.45]	chr14	584171	172	INTRON	INTRON	RALGAPA1	ENSG00000174373.17	ENST00000307138.10:ENST00000389698.7:ENST00000554573.5:ENST00000680220.1:ENST00000554259.6:ENST00000637992.1:ENST00000382366.7:ENST00000553892.2	protein_coding	protein_coding	protein_coding	protein_coding	0	390	2	7.58839	7.91829	8.24819	0.00106381	2.9597e-6	0.0196024	2.17918e-4
chr3	9468674	9468773	1402845	0	+	0.515152	(0.485,0.523]	chr3	150230	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000406341.5:ENST00000670063.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000466242.5:ENST00000682236.1:ENST00000421188.1:ENST00000687014.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	375	2	7.72952	7.917904999999999	8.10629	3.74499e-4	1.5027e-6	0.0111071	1.372e-4
chr16	87739425	87739524	6656475	0	-	0.545455	(0.523,0.58]	chr16	665892	84	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	376	2	7.66191	7.917555	8.1732	4.34904e-4	1.10543e-6	0.0119405	1.11364e-4
chr7	78941710	78941810	3621408	0	-	0.41	(0.39,0.419]	chr7	349208	372	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000440555.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	382	2	7.87719	7.91676	7.95633	5.03322e-4	5.83994e-6	0.0130134	3.52044e-4
chr10	133349088	133349188	4783425	0	-	0.57	(0.523,0.58]	chr10	457516	29	INTRON	INTRON	ENSG00000226699	ENSG00000226699.1	ENST00000452591.1	lncRNA	lncRNA	lncRNA	lncRNA	0	396	2	7.51315	7.916565	8.31998	1.10656e-4	9.60227e-6	0.0058719	4.98808e-4
chr4	3362698	3362798	2005063	0	+	0.56	(0.523,0.58]	chr4	204663	193	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	374	2	7.91368	7.915850000000001	7.91802	2.58976e-4	2.57424e-6	0.0091002	1.97683e-4
chr17	59938737	59938837	6769805	0	+	0.41	(0.39,0.419]	chr17	682956	18	INTRON	INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000443572.6:ENST00000406116.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	858	2	7.0131	7.9156699999999995	8.81824	7.99592e-5	4.48924e-7	0.00496739	6.19006e-5
chr1	43593298	43593397	107383	0	+	0.535354	(0.523,0.58]	chr1	13240	3	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	0	374	2	7.90979	7.9153400000000005	7.92089	2.55138e-4	2.64492e-6	0.00904796	2.01088e-4
chr11	70740985	70741085	5061691	0	-	0.39	(0.36,0.39]	chr11	492701	231	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	853	2	6.94417	7.9152949999999995	8.88642	6.65934e-5	5.5133e-7	0.0045318	7.06931e-5
chr19	7640500	7640597	7199321	0	+	0.56701	(0.523,0.58]	chr19	733972	3	SS3_PROX	SS3_PROX:INTRON	STXBP2	ENSG00000076944.17	ENST00000593535.5:ENST00000595950.5:ENST00000221283.10:ENST00000441779.6:ENST00000597068.5:ENST00000414284.6:ENST00000599737.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	1078	2	6.51304	7.914015	9.31499	1.30936e-5	1.95722e-7	0.00210319	3.59364e-5
chr4	2946011	2946111	2183680	0	-	0.59	(0.58,1]	chr4	221540	2	SS5_PROX	SS5_PROX:INTRON	NOP14	ENSG00000087269.16	ENST00000416614.7:ENST00000314262.10:ENST00000502735.5:ENST00000398071.4	protein_coding	protein_coding	protein_coding	protein_coding	0	362	2	7.64553	7.913679999999999	8.18183	1.49982e-4	2.86865e-7	0.00681825	4.58837e-5
chr2	26092263	26092363	731402	0	+	0.45	(0.419,0.45]	chr2	85215	496	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	384	2	7.7236	7.912955	8.10231	8.29805e-4	4.60051e-6	0.0171232	2.97168e-4
chr3	61813481	61813581	1489136	0	+	0.42	(0.419,0.45]	chr3	160092	422	INTRON	INTRON	PTPRG	ENSG00000144724.20	ENST00000474889.6:ENST00000295874.14	protein_coding	protein_coding	protein_coding	protein_coding	0	391	2	7.53423	7.912955	8.29168	0.00117443	2.59363e-6	0.0207078	1.98973e-4
chr2	169838348	169838448	949453	0	+	0.48	(0.45,0.485]	chr2	104297	99	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11	protein_coding	protein_coding	protein_coding	protein_coding	0	389	2	7.62098	7.9125700000000005	8.20416	1.80024e-4	9.62e-6	0.00755948	4.98808e-4
chr21	45452823	45452923	7630791	0	+	0.39	(0.36,0.39]	chr21	797656	470	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	1	1028	2	6.38663	7.911225	9.43582	1.24953e-4	5.55225e-8	0.0061986	1.58177e-5
chr16	89435719	89435819	6661191	0	-	0.56	(0.523,0.58]	chr16	666753	40	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	817	2	7.15045	7.910830000000001	8.67121	5.2466e-5	1.11716e-7	0.0040205	2.53202e-5
chr20	44402217	44402300	7482935	0	+	0.421687	(0.419,0.45]	chr20	779635	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000682427.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	860	2	6.81164	7.910169999999999	9.0087	7.24095e-5	1.02171e-6	0.00477445	1.05997e-4
chr16	1736156	1736255	6371300	0	+	0.59596	(0.58,1]	chr16	628851	7	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	751	2	7.11676	7.91015	8.70354	1.17528e-5	3.69619e-8	0.00199823	1.22923e-5
chrX	9569140	9569240	7843491	0	+	0.48	(0.45,0.485]	chrX	822423	82	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	821	2	6.88015	7.9090750000000005	8.938	3.94312e-5	4.03351e-7	0.00349773	5.75541e-5
chr7	55553710	55553810	3592451	0	-	0.53	(0.523,0.58]	chr7	346473	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	VOPP1	ENSG00000154978.13	ENST00000462326.5:ENST00000285279.10:ENST00000428648.5:ENST00000454227.5:ENST00000427700.1:ENST00000452832.5:ENST00000453112.5:ENST00000471168.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	373	2	7.8679	7.90862	7.94934	2.4051e-4	3.03516e-6	0.00875172	2.2176e-4
chr20	44405557	44405657	7482971	0	+	0.59	(0.58,1]	chr20	779646	1	SS3_PROX	SS3_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	359	2	7.71557	7.908455	8.10134	1.27227e-4	3.85454e-7	0.00624469	5.6048e-5
chr5	32158163	32158263	2630496	0	-	0.45	(0.419,0.45]	chr5	261026	139	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	384	2	7.666	7.90817	8.15034	9.22665e-4	3.97989e-6	0.0181216	2.69627e-4
chr4	3362798	3362897	2005064	0	+	0.515152	(0.485,0.523]	chr4	204663	194	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	806	2	6.93995	7.90722	8.87449	3.34431e-5	2.4841e-7	0.00320976	4.17612e-5
chr1	30957078	30957178	434855	0	-	0.37	(0.36,0.39]	chr1	51492	27	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000527498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	846	2	6.84615	7.9068249999999995	8.9675	5.661e-5	7.51832e-7	0.00418116	8.70808e-5
chr10	34727807	34727907	4670936	0	-	0.58	(0.523,0.58]	chr10	445543	310	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	376	2	7.76212	7.90671	8.0513	1.94511e-4	4.29035e-6	0.00785001	2.82813e-4
chr4	177435775	177435875	2365537	0	-	0.57	(0.523,0.58]	chr4	236153	1	SS5_PROX	SS5_PROX:INTRON	AGA	ENSG00000038002.9	ENST00000264595.7:ENST00000502310.5:ENST00000506853.5:ENST00000510635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	371	2	7.85474	7.90662	7.9585	2.92581e-4	2.25287e-6	0.00971434	1.80805e-4
chr9	135837463	135837562	4431121	0	-	0.454545	(0.45,0.485]	chr9	423507	95	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	386	2	7.45081	7.905899999999999	8.36099	8.14729e-4	9.02197e-7	0.016997	9.79607e-5
chr7	139703544	139703644	3723181	0	-	0.5	(0.485,0.523]	chr7	357498	715	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	371	2	7.80154	7.905615000000001	8.00969	3.22875e-4	2.06548e-6	0.0102338	1.7021e-4
chr19	8248731	8248831	7200371	0	+	0.46	(0.45,0.485]	chr19	734198	69	INTRON	INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	396	2	7.49611	7.90384	8.31157	1.44501e-4	1.42008e-5	0.00670587	6.57379e-4
chr16	1737436	1737535	6371313	0	+	0.606061	(0.58,1]	chr16	628851	20	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	362	2	7.56243	7.90347	8.24451	1.82142e-4	2.27744e-7	0.00759001	3.97035e-5
chr2	239372700	239372800	1392439	0	-	0.47	(0.45,0.485]	chr2	148759	194	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	378	2	7.58305	7.90319	8.22333	6.27968e-4	1.4105e-6	0.0147128	1.31237e-4
chr1	3471133	3471227	5820	0	+	0.617021	(0.58,1]	chr1	1229	12	INTRON	INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5	protein_coding	protein_coding	protein_coding	protein_coding	0	401	2	7.29604	7.9031	8.51016	1.88753e-5	6.86847e-6	0.00250028	3.9491e-4
chr16	16183230	16183330	6556703	0	-	0.51	(0.485,0.523]	chr16	653131	3	SS3_PROX	SS3_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	371	2	7.71302	7.90243	8.09184	3.87414e-4	1.57607e-6	0.0113274	1.41624e-4
chr1	17676782	17676882	54979	0	+	0.6	(0.58,1]	chr1	5603	118	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	370	2	7.6029	7.900355	8.19781	4.02891e-5	2.33339e-6	0.00352981	1.85287e-4
chr1	5868692	5868791	386500	0	-	0.535354	(0.523,0.58]	chr1	44370	4	INTRON	INTRON	NPHP4	ENSG00000131697.18	ENST00000378156.9:ENST00000478423.6:ENST00000489180.6:ENST00000378169.7:ENST00000468253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	372	2	7.62711	7.900155	8.1732	4.66936e-4	1.10543e-6	0.0124742	1.11364e-4
chr12	132784807	132784904	5540302	0	-	0.525773	(0.523,0.58]	chr12	546788	1	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	376	2	7.71564	7.8996949999999995	8.08375	1.81767e-4	4.99148e-6	0.00759001	3.15032e-4
chr16	89429156	89429256	6661125	0	-	0.52	(0.485,0.523]	chr16	666747	104	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	823	2	7.21515	7.899375000000001	8.5836	6.23971e-5	9.71044e-8	0.00438983	2.27769e-5
chr20	62278960	62279058	7506898	0	+	0.561224	(0.523,0.58]	chr20	782713	8	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3:ENST00000620616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	371	2	7.84217	7.899265	7.95636	2.37025e-4	3.30235e-6	0.0086821	2.35406e-4
chr17	77413019	77413119	6804501	0	+	0.57	(0.523,0.58]	chr17	686779	75	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	383	2	7.59759	7.89919	8.20079	1.42232e-4	7.31734e-6	0.0066525	4.11658e-4
chr10	103836217	103836317	4758467	0	-	0.45	(0.419,0.45]	chr10	454819	345	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	0	382	2	7.80931	7.89875	7.98819	5.07571e-4	1.10512e-5	0.0130815	5.52474e-4
chr12	125120747	125120846	5349509	0	+	0.555556	(0.523,0.58]	chr12	523174	10	EXON_MRNA	EXON_MRNA:INTRON	AACS	ENSG00000081760.17	ENST00000316519.11:ENST00000441247.6:ENST00000316543.14:ENST00000539251.5:ENST00000538851.5:ENST00000545511.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	372	2	7.60939	7.89814	8.18689	4.84115e-4	1.05609e-6	0.012746	1.08085e-4
chr1	172600668	172600767	276264	0	+	0.414141	(0.39,0.419]	chr1	32365	1	INTRON	INTRON	SUCO	ENSG00000094975.14	ENST00000367723.8:ENST00000608151.5:ENST00000616058.4:ENST00000263688.4:ENST00000610051.5	protein_coding	protein_coding	protein_coding	protein_coding	0	396	2	7.52502	7.897745	8.27047	2.35241e-4	2.13644e-5	0.00865867	8.8094e-4
chr15	56984158	56984258	6110998	0	+	0.3	(0.29,0.33]	chr15	601587	627	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	373	2	7.76216	7.897175	8.03219	1.65275e-4	5.20153e-6	0.00722251	3.24991e-4
chr17	80634660	80634760	6809801	0	+	0.54	(0.523,0.58]	chr17	687816	85	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	382	2	7.40886	7.89644	8.38402	7.2654e-4	5.4563e-7	0.0158761	7.01656e-5
chr16	1736846	1736944	6371307	0	+	0.591837	(0.58,1]	chr16	628851	14	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	357	2	7.63653	7.894805	8.15308	1.53179e-4	3.18833e-7	0.00689544	4.9443e-5
chr1	8759832	8759932	395155	0	-	0.37	(0.36,0.39]	chr1	45073	61	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	1	851	2	6.57956	7.894735000000001	9.20991	3.47673e-5	1.73983e-6	0.00327084	1.51476e-4
chr17	7110272	7110371	6847736	0	-	0.636364	(0.58,1]	chr17	693423	10	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	751	2	6.67581	7.894605	9.1134	4.26731e-6	1.93903e-7	0.00128014	3.58253e-5
chr11	70797742	70797842	5062259	0	-	0.44	(0.419,0.45]	chr11	492701	799	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	380	2	7.666	7.894545	8.12309	9.22665e-4	4.3211e-6	0.0181216	2.84036e-4
chr2	166127859	166127949	1302716	0	-	0.455556	(0.45,0.485]	chr2	139806	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	SCN1A	ENSG00000144285.23	ENST00000641603.1:ENST00000641575.1:ENST00000641996.1:ENST00000303395.9:ENST00000674923.1:ENST00000635750.1:ENST00000636194.1:ENST00000635776.1:ENST00000637988.1:ENST00000671940.1:ENST00000673490.1:ENST00000636759.1:ENST00000642141.1:ENST00000507401.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	371	2	7.80049	7.894525	7.98856	4.0738e-4	3.00299e-6	0.011566	2.20332e-4
chr19	6678955	6679024	7322507	0	-	0.536232	(0.523,0.58]	chr19	756372	1	SS5_PROX	SS5_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000599899.5:ENST00000695690.1:ENST00000695691.1:ENST00000695689.1:ENST00000695653.1:ENST00000695654.1:ENST00000602229.1:ENST00000599668.1:ENST00000601008.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	800	2	7.04139	7.893745	8.7461	4.46975e-5	1.62524e-7	0.00368958	3.17386e-5
chr12	19468081	19468180	5183355	0	+	0.464646	(0.45,0.485]	chr12	504355	50	INTRON	INTRON	AEBP2	ENSG00000139154.16	ENST00000538425.5:ENST00000541908.5:ENST00000266508.14:ENST00000398864.7:ENST00000673644.1:ENST00000360995.8:ENST00000673824.1	protein_coding	protein_coding	protein_coding	protein_coding	0	382	2	7.62098	7.891735000000001	8.16249	1.96e-4	9.62e-6	0.00788139	4.98808e-4
chr10	127262123	127262222	4610548	0	+	0.545455	(0.523,0.58]	chr10	440799	43	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2:ENST00000484400.5:ENST00000464466.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	385	2	7.34605	7.8913	8.43655	8.24125e-4	4.57172e-7	0.0170688	6.24644e-5
chr8	128040677	128040775	3920288	0	+	0.346939	(0.33,0.36]	chr8	374321	4	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	0	377	2	7.57176	7.890955	8.21015	6.78512e-4	2.02955e-6	0.0153241	1.68215e-4
chr3	171609483	171609582	1956508	0	-	0.40404	(0.39,0.419]	chr3	198911	37	INTRON	INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9	protein_coding	protein_coding	protein_coding	protein_coding	0	381	2	7.71143	7.88979	8.06815	3.48491e-4	1.22474e-5	0.0106878	5.92597e-4
chr7	73598303	73598393	3602839	0	-	0.377778	(0.36,0.39]	chr7	347628	2	INTRON	INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	376	2	7.66688	7.88916	8.11144	7.25302e-4	3.58462e-6	0.0158761	2.51052e-4
chr16	89430455	89430555	6661138	0	-	0.51	(0.485,0.523]	chr16	666747	117	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	824	2	7.25446	7.888905	8.52335	7.09509e-5	8.48638e-8	0.0047097	2.13042e-5
chr12	81098184	81098284	5283216	0	+	0.61	(0.58,1]	chr12	514448	194	INTRON	INTRON	ACSS3	ENSG00000111058.8	ENST00000549175.1:ENST00000261206.7:ENST00000548058.6	protein_coding	protein_coding	protein_coding	protein_coding	0	355	2	7.64553	7.88833	8.13113	1.49982e-4	3.45578e-7	0.00681825	5.18663e-5
chr5	856973	857072	2607924	0	-	0.50505	(0.485,0.523]	chr5	259417	60	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	0	402	2	7.16424	7.887435	8.61063	0.0011719	2.79187e-7	0.0206836	4.50012e-5
chr7	135928243	135928342	3718944	0	-	0.434343	(0.419,0.45]	chr7	357211	16	UTR3	UTR3:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4	protein_coding	protein_coding	protein_coding	protein_coding	0	387	2	7.62732	7.887155	8.14699	3.76722e-4	1.89098e-5	0.011139	8.09334e-4
chr5	1498385	1498484	2609723	0	-	0.616162	(0.58,1]	chr5	259859	31	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000514484.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	403	2	7.22874	7.886495	8.54425	1.7367e-5	8.67357e-6	0.00238925	4.6303e-4
chr2	3294502	3294602	1081052	0	-	0.58	(0.523,0.58]	chr2	117633	118	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	368	2	7.81598	7.88617	7.95636	2.37025e-4	3.59812e-6	0.0086821	2.5106e-4
chr13	113056501	113056600	5656202	0	+	0.606061	(0.58,1]	chr13	555189	17	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	364	2	7.62401	7.886015	8.14802	4.54252e-5	2.16446e-6	0.00373545	1.7578e-4
chr10	75846179	75846279	4524629	0	+	0.43	(0.419,0.45]	chr10	432282	628	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	381	2	7.56157	7.885705	8.20984	0.00111728	3.32447e-6	0.0202011	2.36181e-4
chr11	70741285	70741385	5061694	0	-	0.5	(0.485,0.523]	chr11	492701	234	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	373	2	7.69299	7.88537	8.07775	1.81848e-4	5.79324e-6	0.00759001	3.51119e-4
chr11	71484844	71484944	4887711	0	+	0.51	(0.485,0.523]	chr11	471504	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NADSYN1	ENSG00000172890.13	ENST00000319023.7:ENST00000525200.5:ENST00000529840.5:ENST00000530055.5:ENST00000526039.6:ENST00000531236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	374	2	7.67372	7.885339999999999	8.09696	1.74681e-4	6.16462e-6	0.00740488	3.65322e-4
chr12	132536352	132536451	5352979	0	+	0.414141	(0.39,0.419]	chr12	523670	80	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	379	2	7.55132	7.88486	8.2184	9.34425e-4	2.61595e-6	0.0182921	1.99489e-4
chr4	1324400	1324497	1995282	0	+	0.463918	(0.45,0.485]	chr4	203264	4	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	372	2	7.59205	7.884335	8.17662	6.16892e-4	1.64042e-6	0.0145945	1.45691e-4
chr10	75728647	75728746	4523450	0	+	0.494949	(0.485,0.523]	chr10	432271	807	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	379	2	7.39901	7.88373	8.36845	7.33641e-4	6.29204e-7	0.0159757	7.75874e-5
chr10	79221272	79221372	4533574	0	+	0.69	(0.58,1]	chr10	432457	46	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	744	2	6.67581	7.88316	9.09051	4.51695e-6	1.93903e-7	0.00130045	3.58253e-5
chr11	12814722	12814822	4803049	0	+	0.53	(0.523,0.58]	chr11	460563	499	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	0	392	2	7.42346	7.882535	8.34161	1.05715e-4	1.27928e-5	0.00574304	6.12982e-4
chr4	56437222	56437320	2046039	0	+	0.469388	(0.45,0.485]	chr4	209256	5	INTRON	INTRON	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000505164.5:ENST00000504188.1:ENST00000399688.7:ENST00000510584.1:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	373	2	7.72666	7.881489999999999	8.03632	2.533e-4	6.90138e-6	0.00901269	3.9653e-4
chr10	132755072	132755172	4619023	0	+	0.5	(0.485,0.523]	chr10	441201	12	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	0	367	2	7.62754	7.881145	8.13475	4.61541e-4	1.36784e-6	0.0123746	1.28697e-4
chr2	229819012	229819111	1380840	0	-	0.383838	(0.36,0.39]	chr2	147548	1	INTRON	INTRON	TRIP12	ENSG00000153827.14	ENST00000675453.1:ENST00000675903.1:ENST00000283943.9:ENST00000675423.1:ENST00000389044.8:ENST00000389045.7:ENST00000479037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	378	2	7.71201	7.881125000000001	8.05024	3.46976e-4	1.20737e-5	0.0106847	5.87067e-4
chr12	122094062	122094162	5343529	0	+	0.53	(0.523,0.58]	chr12	521864	144	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	385	2	7.49124	7.88067	8.2701	1.22932e-4	1.0301e-5	0.00615337	5.2504e-4
chr2	239344784	239344884	1392158	0	-	0.49	(0.485,0.523]	chr2	148752	203	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	367	2	7.80351	7.880155	7.9568	2.34053e-4	4.05085e-6	0.00863036	2.73332e-4
chr2	233165922	233166022	1058285	0	+	0.51	(0.485,0.523]	chr2	115120	11	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493078.1:ENST00000472517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	365	2	7.67943	7.87834	8.07725	4.15047e-4	1.65376e-6	0.0117016	1.46103e-4
chr2	127387251	127387351	1265648	0	-	0.69	(0.58,1]	chr2	136375	4	SS5_PROX	SS5_PROX:INTRON	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5	protein_coding	protein_coding	protein_coding	protein_coding	0	352	2	7.84685	7.877105	7.90736	8.08063e-5	9.72929e-7	0.00498873	1.03091e-4
chr9	114074252	114074321	4373770	0	-	0.405797	(0.39,0.419]	chr9	418048	1	SS3_PROX	SS3_PROX:INTRON	AMBP	ENSG00000106927.12	ENST00000265132.8:ENST00000540645.5:ENST00000466610.6:ENST00000603230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	375	2	7.58742	7.876525	8.16563	8.73029e-4	3.07756e-6	0.0176283	2.23711e-4
chr11	70777057	70777157	5062052	0	-	0.49	(0.485,0.523]	chr11	492701	592	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	377	2	7.57331	7.875335	8.17736	1.47565e-4	8.51093e-6	0.0067648	4.57175e-4
chr6	10588713	10588813	2850434	0	+	0.49	(0.485,0.523]	chr6	278695	14	INTRON	INTRON	GCNT2	ENSG00000111846.20	ENST00000410107.5:ENST00000489225.5:ENST00000397423.7:ENST00000495262.7:ENST00000475577.5:ENST00000489819.5:ENST00000474518.1:ENST00000379597.7:ENST00000485764.1:ENST00000461400.1:ENST00000316170.9:ENST00000459872.1:ENST00000265012.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	367	2	7.75849	7.87496	7.99143	2.17771e-4	4.68783e-6	0.00834646	3.01071e-4
chr1	1031219	1031319	1027	0	+	0.52	(0.485,0.523]	chr1	166	84	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	366	2	7.78567	7.87473	7.96379	2.30672e-4	4.2924e-6	0.00856599	2.82813e-4
chr10	127261523	127261623	4610542	0	+	0.55	(0.523,0.58]	chr10	440799	37	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2:ENST00000484400.5:ENST00000464466.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	832	2	7.3622	7.873055	8.38391	9.66686e-5	5.37959e-8	0.00549605	1.56042e-5
chr2	232899871	232899970	1383837	0	-	0.414141	(0.39,0.419]	chr2	147952	46	INTRON	INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000416114.3:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	374	2	7.57848	7.872055	8.16563	8.87861e-4	3.07756e-6	0.0177608	2.23711e-4
chr10	103701209	103701309	4757112	0	-	0.45	(0.419,0.45]	chr10	454791	77	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	378	2	7.70289	7.87191	8.04093	4.59832e-4	1.51402e-5	0.0123493	6.8895e-4
chr4	3362399	3362499	2005060	0	+	0.53	(0.523,0.58]	chr4	204663	190	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	362	2	7.72909	7.871205	8.01332	3.78993e-4	1.87974e-6	0.011147	1.59522e-4
chr9	133854090	133854190	4428939	0	-	0.54	(0.523,0.58]	chr9	423304	194	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	1	976	2	6.73549	7.87108	9.00667	3.54522e-5	6.56327e-8	0.00328875	1.775e-5
chr4	1324692	1324789	1995285	0	+	0.474227	(0.45,0.485]	chr4	203264	7	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	371	2	7.51844	7.870885	8.22333	7.1335e-4	1.4105e-6	0.0157644	1.31237e-4
chr7	74496307	74496406	3391790	0	+	0.535354	(0.523,0.58]	chr7	327343	418	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	0	365	2	7.76212	7.869680000000001	7.97724	2.26961e-4	4.29035e-6	0.00851514	2.82813e-4
chr10	103701708	103701808	4757117	0	-	0.47	(0.45,0.485]	chr10	454791	82	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	371	2	7.66998	7.866215	8.06245	2.40226e-4	8.24934e-6	0.00875172	4.47929e-4
chr1	17674385	17674485	54955	0	+	0.64	(0.58,1]	chr1	5603	94	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	366	2	7.5039	7.865995	8.22809	3.74502e-5	3.31459e-6	0.00338946	2.35778e-4
chr13	42319818	42319916	5579239	0	+	0.397959	(0.39,0.419]	chr13	550311	7	UTR3	UTR3:EXON_MRNA	AKAP11	ENSG00000023516.9	ENST00000025301.4	protein_coding	protein_coding	protein_coding	protein_coding	1	833	2	6.56946	7.86543	9.1614	4.03077e-5	1.81666e-6	0.00352981	1.55823e-4
chr7	75712568	75712668	3608229	0	-	0.41	(0.39,0.419]	chr7	348444	575	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6:ENST00000485723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	388	2	7.4825	7.865295	8.24809	2.45735e-4	2.42315e-5	0.00885847	9.65272e-4
chr16	85590129	85590229	6518974	0	+	0.43	(0.419,0.45]	chr16	646396	334	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	1	1030	2	6.55785	7.86456	9.17127	1.13501e-4	1.71753e-7	0.00594264	3.29284e-5
chr10	100970707	100970801	4569829	0	+	0.468085	(0.45,0.485]	chr10	436226	4	INTRON	INTRON	SEMA4G	ENSG00000095539.15	ENST00000519649.5:ENST00000521006.5:ENST00000518124.5:ENST00000518244.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	365	2	7.62749	7.86376	8.10003	5.75076e-4	2.0999e-6	0.0140419	1.72118e-4
chr1	1222843	1222943	380415	0	-	0.56	(0.523,0.58]	chr1	42842	2	SS5_PROX	SS5_PROX:INTRON	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000403997.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	368	2	7.4592	7.8628149999999994	8.26643	6.56487e-4	8.09622e-7	0.0150669	9.13796e-5
chr2	69639977	69640077	1177197	0	-	0.49	(0.485,0.523]	chr2	128070	826	INTRON	INTRON	AAK1	ENSG00000115977.21	ENST00000409085.9:ENST00000606389.7:ENST00000409068.5:ENST00000406297.7:ENST00000495836.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	361	2	7.66234	7.862425	8.06251	4.29834e-4	1.73607e-6	0.011904	1.51436e-4
chr6	47232574	47232669	3143729	0	-	0.442105	(0.419,0.45]	chr6	306733	12	UTR3	UTR3:EXON_MRNA	TNFRSF21	ENSG00000146072.6	ENST00000296861.2	protein_coding	protein_coding	protein_coding	protein_coding	3	1487	2	6.75254	7.8621799999999995	8.97182	7.77736e-5	1.3262e-7	0.00492182	2.7946e-5
chr15	28653177	28653277	6068890	0	+	0.46	(0.45,0.485]	chr15	596168	12	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	0	366	2	7.56489	7.86051	8.15613	6.50921e-4	1.75259e-6	0.0149908	1.52193e-4
chr6	169621651	169621751	3304073	0	-	0.39	(0.36,0.39]	chr6	319826	76	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	382	2	7.35723	7.8589850000000006	8.36074	0.00130006	1.65947e-6	0.0220198	1.463e-4
chr1	112706427	112706502	563035	0	-	0.493333	(0.485,0.523]	chr1	64623	2	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	RHOC	ENSG00000155366.17	ENST00000369633.6:ENST00000369642.7:ENST00000339083.12:ENST00000285735.6:ENST00000468093.5:ENST00000369638.6:ENST00000369637.5:ENST00000369636.6:ENST00000484280.6:ENST00000369632.6:ENST00000425265.6:ENST00000436685.6:ENST00000528831.5:ENST00000484054.3:ENST00000478447.1:ENST00000527563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	374	2	7.5311	7.85723	8.18336	1.45715e-4	9.74032e-6	0.00674114	5.03958e-4
chr16	81678728	81678828	6510098	0	+	0.55	(0.523,0.58]	chr16	645978	1	SS5_PROX	SS5_PROX:INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	1	799	2	6.48325	7.85691	9.23057	1.57268e-5	1.08577e-6	0.00227969	1.10076e-4
chr9	135837363	135837463	4431120	0	-	0.52	(0.485,0.523]	chr9	423507	94	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	382	2	7.24681	7.85685	8.46689	9.94865e-4	4.52617e-7	0.0189547	6.22319e-5
chr22	24092641	24092741	7695285	0	+	0.35	(0.33,0.36]	chr22	805504	4	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6	protein_coding	protein_coding	protein_coding	protein_coding	0	369	2	7.51621	7.856585000000001	8.19696	7.5644e-4	2.11571e-6	0.0162519	1.73297e-4
chr2	119876822	119876922	884765	0	+	0.38	(0.36,0.39]	chr2	100125	1	SS3_PROX	SS3_PROX:INTRON	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000460289.5:ENST00000488279.6:ENST00000485247.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	373	2	7.6557	7.856199999999999	8.0567	3.4265e-4	1.42964e-5	0.0105917	6.59187e-4
chr16	89303420	89303519	6659843	0	-	0.585859	(0.58,1]	chr16	666658	14	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	1157	2	6.43347	7.856085	9.2787	2.82759e-6	3.17243e-8	0.00112513	1.11281e-5
chr1	31011100	31011200	435413	0	-	0.48	(0.45,0.485]	chr1	51564	36	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	362	2	7.85085	7.856075000000001	7.8613	3.60602e-4	4.6584e-6	0.0108631	2.9987e-4
chr21	45109142	45109242	7629005	0	+	0.57	(0.523,0.58]	chr21	797509	340	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	358	2	7.76954	7.85599	7.94244	3.48766e-4	2.37532e-6	0.0106878	1.87465e-4
chr4	886869	886968	2178471	0	-	0.525253	(0.523,0.58]	chr4	220626	12	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	363	2	7.51737	7.85553	8.19369	5.83644e-4	1.03241e-6	0.0141349	1.06505e-4
chr11	63871567	63871667	4867129	0	+	0.5	(0.485,0.523]	chr11	466776	18	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5:ENST00000543674.1:ENST00000540169.5	protein_coding	protein_coding	protein_coding	protein_coding	0	363	2	7.52727	7.855265	8.18326	5.66104e-4	1.16501e-6	0.0138751	1.15365e-4
chr16	1737929	1738027	6371318	0	+	0.602041	(0.58,1]	chr16	628851	25	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	352	2	7.46412	7.854315	8.24451	2.28899e-4	2.27744e-7	0.00852546	3.97035e-5
chr17	72554631	72554730	6963857	0	-	0.555556	(0.523,0.58]	chr17	710389	202	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	373	2	7.33531	7.8537	8.37209	8.42028e-4	5.6798e-7	0.0172456	7.21012e-5
chr11	12814822	12814922	4803050	0	+	0.62	(0.58,1]	chr11	460563	500	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	0	354	2	7.62401	7.853635	8.08326	5.30758e-5	2.16446e-6	0.00404756	1.7578e-4
chr3	10886893	10886993	1408401	0	+	0.36	(0.33,0.36]	chr3	151278	114	INTRON	INTRON	SLC6A11	ENSG00000132164.10	ENST00000254488.7	protein_coding	protein_coding	protein_coding	protein_coding	0	410	2	7.03957	7.85361	8.66765	0.0018891	4.73239e-7	0.0271118	6.39925e-5
chr2	239345383	239345483	1392164	0	-	0.53	(0.523,0.58]	chr2	148752	209	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	778	2	6.66649	7.8525849999999995	9.03868	2.38219e-5	5.84317e-7	0.00282051	7.34534e-5
chr14	68899769	68899867	5999337	0	-	0.571429	(0.523,0.58]	chr14	588704	57	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	367	2	7.6078	7.85216	8.09652	1.76975e-4	7.07993e-6	0.00747595	4.04575e-4
chr14	95414736	95414836	6048924	0	-	0.45	(0.419,0.45]	chr14	593438	76	UTR3	UTR3:EXON_MRNA	SYNE3	ENSG00000176438.13	ENST00000682763.1:ENST00000557275.5	protein_coding	protein_coding	protein_coding	protein_coding	0	382	2	7.52692	7.851839999999999	8.17676	3.56163e-4	2.53648e-5	0.0107631	9.97976e-4
chr19	8248930	8249030	7200373	0	+	0.43	(0.419,0.45]	chr19	734198	71	INTRON	INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	374	2	7.65612	7.851755	8.04739	4.54295e-4	1.73755e-5	0.0122651	7.60727e-4
chr9	137781298	137781396	4266122	0	+	0.55102	(0.523,0.58]	chr9	407438	12	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	357	2	7.70426	7.851065	7.99787	3.98791e-4	1.97827e-6	0.0114313	1.65213e-4
chr2	36845967	36846067	1119347	0	-	0.47	(0.45,0.485]	chr2	122323	84	UTR3	UTR3:EXON_MRNA	STRN	ENSG00000115808.12	ENST00000263918.9	protein_coding	protein_coding	protein_coding	protein_coding	0	384	2	7.41795	7.8510100000000005	8.28407	1.5288e-4	1.809e-5	0.00689544	7.83029e-4
chr17	15456579	15456678	6860000	0	-	0.50505	(0.485,0.523]	chr17	695067	31	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	361	2	7.73078	7.850765	7.97075	2.27355e-4	5.1276e-6	0.00851514	3.21808e-4
chr18	76403280	76403380	7179152	0	-	0.5	(0.485,0.523]	chr18	730080	226	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	357	2	7.78585	7.85012	7.91439	3.335e-4	2.82255e-6	0.0104047	2.10589e-4
chr11	70803225	70803324	5062315	0	-	0.50505	(0.485,0.523]	chr11	492707	43	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5:ENST00000460048.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	373	2	7.50952	7.84943	8.18934	1.43895e-4	1.04342e-5	0.00669515	5.30224e-4
chr20	10664314	10664414	7525329	0	-	0.44	(0.419,0.45]	chr20	785557	3	SS3_PROX	SS3_PROX:INTRON	JAG1	ENSG00000101384.12	ENST00000254958.10	protein_coding	protein_coding	protein_coding	protein_coding	0	370	2	7.73024	7.84907	7.9679	5.27191e-4	1.39662e-5	0.0133783	6.48662e-4
chr8	128041560	128041658	3920297	0	+	0.418367	(0.39,0.419]	chr8	374321	13	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	1	834	2	7.1006	7.848805	8.59701	1.23928e-4	3.40034e-7	0.00618972	5.13556e-5
chr10	34684863	34684963	4670505	0	-	0.42	(0.419,0.45]	chr10	445537	53	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	1	824	2	6.75989	7.848675	8.93746	8.3124e-5	1.19931e-6	0.00505825	1.17446e-4
chr4	185364966	185365066	2172566	0	+	0.42	(0.419,0.45]	chr4	220054	11	INTRON	INTRON	SNX25	ENSG00000109762.17	ENST00000504959.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	836	2	6.51968	7.848445	9.17721	5.21951e-5	2.51509e-6	0.00401507	1.94522e-4
chr22	25726814	25726913	7703402	0	+	0.565657	(0.523,0.58]	chr22	806116	45	UTR3	UTR3:EXON_MRNA	GRK3	ENSG00000100077.16	ENST00000324198.11	protein_coding	protein_coding	protein_coding	protein_coding	0	364	2	7.63802	7.847935	8.05785	1.91871e-4	6.42092e-6	0.00780212	3.76263e-4
chr9	124491728	124491817	4402640	0	-	0.539326	(0.523,0.58]	chr9	419811	1	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	0	357	2	7.63589	7.8473	8.05871	4.58646e-4	1.61742e-6	0.0123493	1.43996e-4
chr6	131717372	131717472	3007707	0	+	0.5	(0.485,0.523]	chr6	294103	234	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000414305.5:ENST00000357639.8:ENST00000358229.6	protein_coding	protein_coding	protein_coding	protein_coding	0	373	2	7.49861	7.84695	8.19529	1.42104e-4	1.08033e-5	0.0066525	5.4404e-4
chr16	67967456	67967552	6610226	0	-	0.489583	(0.485,0.523]	chr16	661575	7	INTRON	INTRON	SLC12A4	ENSG00000124067.17	ENST00000422611.6:ENST00000316341.8:ENST00000572037.5:ENST00000570802.5:ENST00000576616.5:ENST00000573023.6:ENST00000576377.1:ENST00000571299.5:ENST00000572010.5:ENST00000576462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	379	2	7.41983	7.845180000000001	8.27053	1.21273e-4	1.3874e-5	0.00611152	6.45948e-4
chr2	186213420	186213520	1339439	0	-	0.42	(0.419,0.45]	chr2	142319	344	INTRON	INTRON	LINC01473	ENSG00000237877.7	ENST00000658984.1:ENST00000658990.1:ENST00000655126.1:ENST00000667839.1:ENST00000670612.1:ENST00000668985.1:ENST00000661574.1:ENST00000666677.1:ENST00000665629.1:ENST00000419719.2:ENST00000667056.1:ENST00000671599.1	lncRNA	lncRNA	lncRNA	lncRNA	1	823	2	6.83849	7.844985	8.85148	9.81532e-5	9.4007e-7	0.00553808	1.00689e-4
chr16	89429656	89429756	6661130	0	-	0.52	(0.485,0.523]	chr16	666747	109	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	1068	2	6.78903	7.84463	8.90023	3.16394e-5	8.21384e-8	0.00314447	2.09329e-5
chr2	38325407	38325507	1123814	0	-	0.4	(0.39,0.419]	chr2	123019	60	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	363	2	7.7713	7.844135	7.91697	6.16169e-4	6.58275e-6	0.0145945	3.83338e-4
chr5	109702335	109702434	2503500	0	+	0.50505	(0.485,0.523]	chr5	248829	114	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5	protein_coding	protein_coding	protein_coding	protein_coding	0	375	2	7.45412	7.842315	8.23051	1.31951e-4	1.24448e-5	0.00637826	5.98526e-4
chr16	81614615	81614714	6509442	0	+	0.454545	(0.45,0.485]	chr16	645921	37	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	370	2	7.54946	7.84071	8.13196	2.08574e-4	1.2029e-5	0.00813372	5.8591e-4
chr2	239158854	239158953	1390285	0	-	0.515152	(0.485,0.523]	chr2	148698	17	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	355	2	7.81707	7.84067	7.86427	3.12689e-4	3.32419e-6	0.0100453	2.36181e-4
chr5	856774	856873	2607922	0	-	0.50505	(0.485,0.523]	chr5	259417	58	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	0	402	2	7.01065	7.84042	8.67019	0.00158449	2.28369e-7	0.0245893	3.97035e-5
chr17	78815830	78815927	6979622	0	-	0.402062	(0.39,0.419]	chr17	712698	9	INTRON	INTRON	USP36	ENSG00000055483.20	ENST00000589225.5:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10:ENST00000588086.6:ENST00000588467.5:ENST00000586066.3:ENST00000590312.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	363	2	7.63994	7.839639999999999	8.03934	7.90635e-4	4.5334e-6	0.0167102	2.94386e-4
chr20	64021961	64022059	7510621	0	+	0.561224	(0.523,0.58]	chr20	783726	48	INTRON	INTRON	PRPF6	ENSG00000101161.8	ENST00000266079.5	protein_coding	protein_coding	protein_coding	protein_coding	2	1024	2	6.47596	7.83863	9.2013	1.67572e-5	2.22332e-7	0.00235999	3.91312e-5
chr12	132535655	132535755	5352972	0	+	0.66	(0.58,1]	chr12	523670	73	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	342	2	7.83785	7.83812	7.83839	9.51865e-5	1.0051e-6	0.00545658	1.05275e-4
chr14	63484350	63484450	5992382	0	-	0.4	(0.39,0.419]	chr14	587804	301	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	362	2	7.83276	7.83802	7.84328	5.47989e-4	8.23077e-6	0.0136476	4.47628e-4
chr12	132950363	132950463	5542035	0	-	0.54	(0.523,0.58]	chr12	547064	17	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	354	2	7.66191	7.8376149999999996	8.01332	4.34904e-4	1.87974e-6	0.0119405	1.59522e-4
chr1	23392286	23392385	424238	0	-	0.434343	(0.419,0.45]	chr1	49807	45	INTRON	INTRON	TCEA3	ENSG00000204219.11	ENST00000450454.7:ENST00000476978.2	protein_coding	protein_coding	protein_coding	protein_coding	1	844	2	7.12148	7.837345	8.55321	1.74154e-4	3.89452e-7	0.00740243	5.64502e-5
chr9	94996319	94996419	4189956	0	+	0.47	(0.45,0.485]	chr9	398123	165	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000297979.9:ENST00000424143.5:ENST00000462125.5:ENST00000479161.5:ENST00000451893.5:ENST00000460573.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	357	2	7.8236	7.837225	7.85085	3.8895e-4	4.6584e-6	0.0113333	2.9987e-4
chrX	9568541	9568641	7843485	0	+	0.5	(0.485,0.523]	chrX	822423	76	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	768	2	6.73679	7.8365100000000005	8.93623	2.92772e-5	4.94594e-7	0.0030467	6.59246e-5
chr21	45476910	45476980	7631039	0	+	0.542857	(0.523,0.58]	chr21	797686	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	356	2	7.74371	7.8358799999999995	7.92805	2.51374e-4	4.55571e-6	0.0089838	2.94841e-4
chr16	85399132	85399232	6517062	0	+	0.52	(0.485,0.523]	chr16	646391	398	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	370	2	7.48762	7.83549	8.18336	1.45715e-4	1.11881e-5	0.00674114	5.5674e-4
chr13	113057698	113057797	5656214	0	+	0.535354	(0.523,0.58]	chr13	555189	29	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	375	2	7.42346	7.83541	8.24736	1.28961e-4	1.27928e-5	0.00629953	6.12982e-4
chr7	91941846	91941946	3412371	0	+	0.4	(0.39,0.419]	chr7	329504	3	INTRON	INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000394564.5:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	378	2	7.47168	7.834054999999999	8.19643	2.71738e-4	2.50197e-5	0.00935325	9.88464e-4
chr18	7676579	7676679	7006023	0	+	0.52	(0.485,0.523]	chr18	716101	1083	INTRON	INTRON	PTPRM	ENSG00000173482.17	ENST00000332175.12:ENST00000580170.6	protein_coding	protein_coding	protein_coding	protein_coding	0	373	2	7.44278	7.833740000000001	8.2247	1.33576e-4	1.29007e-5	0.00642129	6.14919e-4
chr3	111198637	111198737	1532916	0	+	0.5	(0.485,0.523]	chr3	162895	52	INTRON	INTRON	NECTIN3	ENSG00000177707.11	ENST00000485506.1	protein_coding	protein_coding	protein_coding	protein_coding	1	767	2	6.91212	7.8333699999999995	8.75462	4.32717e-5	2.73055e-7	0.00364267	4.43081e-5
chr2	239372800	239372900	1392440	0	-	0.46	(0.45,0.485]	chr2	148759	195	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	358	2	7.75419	7.833335	7.91248	3.25318e-4	6.32716e-6	0.010266	3.72196e-4
chr17	356296	356396	6821856	0	-	0.59	(0.58,1]	chr17	689641	33	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	1	842	2	6.323	7.832025	9.34105	3.07832e-5	3.68235e-9	0.00310406	2.8754e-6
chr21	44866642	44866740	7678508	0	-	0.489796	(0.485,0.523]	chr21	802773	6	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	6407	2	7.51158	7.831545	8.15151	7.72942e-7	3.81386e-9	7.94453e-4	2.89829e-6
chr13	75402587	75402687	5727210	0	-	0.37	(0.36,0.39]	chr13	561722	254	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	0	361	2	7.60652	7.83051	8.0545	8.13425e-4	4.26867e-6	0.016997	2.82803e-4
chr17	80024301	80024401	6982159	0	-	0.51	(0.485,0.523]	chr17	713081	103	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7	protein_coding	protein_coding	protein_coding	protein_coding	0	353	2	7.81235	7.8299900000000004	7.84763	2.93546e-4	3.93619e-6	0.00972826	2.67098e-4
chr16	67967263	67967359	6610224	0	-	0.479167	(0.45,0.485]	chr16	661575	5	INTRON	INTRON	SLC12A4	ENSG00000124067.17	ENST00000422611.6:ENST00000316341.8:ENST00000572037.5:ENST00000570802.5:ENST00000576616.5:ENST00000573023.6:ENST00000576377.1:ENST00000571299.5:ENST00000572010.5:ENST00000576462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	355	2	7.66208	7.8291699999999995	7.99626	5.36919e-4	2.92984e-6	0.0135174	2.16859e-4
chr6	169659718	169659818	3304468	0	-	0.63	(0.58,1]	chr6	319895	2	SS3_PROX	SS3_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2:ENST00000467418.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	347	2	7.61349	7.828225	8.04296	5.84601e-5	2.24706e-6	0.0042453	1.80805e-4
chr5	14348798	14348898	2385420	0	+	0.44	(0.419,0.45]	chr5	238535	117	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000512070.6:ENST00000509967.6:ENST00000513206.5:ENST00000515144.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	361	2	7.77121	7.82774	7.88427	7.59955e-4	8.84297e-6	0.0162896	0.00047013000000000003
chr3	12966588	12966687	1688795	0	-	0.59596	(0.58,1]	chr3	176520	56	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	355	2	7.48094	7.827035	8.17313	4.27594e-5	3.59436e-6	0.00362006	2.5106e-4
chr4	76956917	76957017	2061309	0	+	0.48	(0.45,0.485]	chr4	210881	66	INTRON	INTRON	SEPTIN11	ENSG00000138758.12	ENST00000502584.5:ENST00000264893.11:ENST00000510641.5:ENST00000505788.5:ENST00000512575.5:ENST00000510515.5:ENST00000504637.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	355	2	7.80771	7.827025	7.84634	3.71603e-4	5.34158e-6	0.0110758	3.30369e-4
chr1	43559522	43559622	107034	0	+	0.54	(0.523,0.58]	chr1	13192	52	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	1523	2	5.78304	7.826345	9.86965	6.48577e-5	3.29284e-9	0.00447658	2.65874e-6
chr17	355796	355896	6821851	0	-	0.55	(0.523,0.58]	chr17	689641	28	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	0	352	2	7.57328	7.823404999999999	8.07353	5.21034e-4	1.53986e-6	0.0132625	1.3934e-4
chr3	13199826	13199926	1691140	0	-	0.54	(0.523,0.58]	chr3	176566	353	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	351	2	7.80714	7.82338	7.83962	3.01864e-4	3.70366e-6	0.00987906	2.56925e-4
chr1	43560320	43560419	107042	0	+	0.494949	(0.485,0.523]	chr1	13192	60	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	776	2	6.50494	7.82314	9.14134	1.87899e-5	1.07921e-6	0.00249961	1.09706e-4
chr21	45452923	45453023	7630792	0	+	0.41	(0.39,0.419]	chr21	797656	471	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	1	808	2	6.96727	7.82302	8.67877	1.05435e-4	5.19098e-7	0.00573959	6.79442e-5
chr1	228143927	228144027	358023	0	+	0.49	(0.485,0.523]	chr1	40401	17	INTRON	INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	359	2	7.59396	7.822844999999999	8.05173	1.92016e-4	7.96614e-6	0.00780212	4.36503e-4
chr17	2679511	2679609	6667325	0	+	0.459184	(0.45,0.485]	chr17	667990	15	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000397195.10:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000397193.7:ENST00000574468.1:ENST00000571495.2:ENST00000675574.1:ENST00000675385.1:ENST00000675084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	360	2	7.62098	7.822025	8.02307	2.6019e-4	9.62e-6	0.00912846	4.98808e-4
chr2	3220541	3220640	1080306	0	-	0.414141	(0.39,0.419]	chr2	117609	59	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000482570.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	375	2	7.28066	7.820415000000001	8.36017	0.0015472	1.68737e-6	0.0243048	1.4806e-4
chr1	48227265	48227363	120972	0	+	0.520408	(0.485,0.523]	chr1	15165	21	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	918	2	6.43291	7.820365	9.20782	6.73626e-5	3.66246e-8	0.00457717	1.22043e-5
chr2	239371201	239371301	1392424	0	-	0.43	(0.419,0.45]	chr2	148759	179	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	809	2	6.81502	7.820214999999999	8.82541	1.03219e-4	1.01105e-6	0.0056665	1.05467e-4
chr15	28652483	28652582	6068883	0	+	0.515152	(0.485,0.523]	chr15	596168	5	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	0	350	2	7.80154	7.8200400000000005	7.83854	3.22875e-4	3.61475e-6	0.0102338	2.52006e-4
chr9	127549259	127549359	4411996	0	-	0.56	(0.523,0.58]	chr9	420485	171	INTRON	INTRON	NIBAN2	ENSG00000136830.12	ENST00000373314.7:ENST00000373312.4:ENST00000478917.1:ENST00000468379.1:ENST00000484348.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	352	2	7.72506	7.81937	7.91368	2.58976e-4	4.84091e-6	0.0091002	3.08192e-4
chr13	113058695	113058795	5656224	0	+	0.61	(0.58,1]	chr13	555189	39	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	360	2	7.38528	7.8185649999999995	8.25185	3.53598e-5	5.03066e-6	0.00328636	3.16553e-4
chr22	20122697	20122797	7686869	0	+	0.64	(0.58,1]	chr22	804211	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000331821.7:ENST00000411892.5:ENST00000423859.5:ENST00000418705.2:ENST00000448394.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	339	2	7.74456	7.81844	7.89232	8.37496e-5	1.40636e-6	0.00507439	1.31121e-4
chr21	42849225	42849316	7675464	0	-	0.428571	(0.419,0.45]	chr21	802288	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	384	2	7.19343	7.818020000000001	8.44261	0.00217056	1.63716e-6	0.029243	1.45555e-4
chr11	63871467	63871567	4867128	0	+	0.52	(0.485,0.523]	chr11	466776	17	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5:ENST00000543674.1:ENST00000540169.5	protein_coding	protein_coding	protein_coding	protein_coding	0	359	2	7.37823	7.81728	8.25633	7.64953e-4	9.14167e-7	0.0163688	9.84802e-5
chr20	32476132	32476231	7543629	0	-	0.545455	(0.523,0.58]	chr20	787372	10	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	374	2	7.36443	7.817264999999999	8.2701	1.22932e-4	1.54352e-5	0.00615337	6.98728e-4
chr18	76418366	76418465	7179303	0	-	0.363636	(0.36,0.39]	chr18	730080	377	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	358	2	7.57986	7.8171800000000005	8.0545	8.55571e-4	4.26867e-6	0.0173939	2.82803e-4
chr6	128107980	128108080	3253033	0	-	0.37	(0.36,0.39]	chr6	315160	176	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000531050.5:ENST00000524534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	357	2	7.60652	7.8158449999999995	8.02517	8.13425e-4	4.6697e-6	0.016997	3.0041e-4
chr7	47474608	47474708	3588554	0	-	0.43	(0.419,0.45]	chr7	346123	215	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	819	2	6.46902	7.815715	9.16241	5.37204e-5	2.93799e-6	0.00405853	2.17062e-4
chr2	239282176	239282276	1391530	0	-	0.42	(0.419,0.45]	chr2	148740	306	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	368	2	7.38921	7.81554	8.24187	0.00152802	3.01699e-6	0.0240842	2.21069e-4
chr19	7153327	7153427	7323800	0	-	0.56	(0.523,0.58]	chr19	756779	4	SS3_PROX	SS3_PROX:INTRON	INSR	ENSG00000171105.14	ENST00000341500.9:ENST00000302850.10:ENST00000598216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	849	2	6.07886	7.815149999999999	9.55144	7.82468e-6	4.19123e-6	0.00169721	2.79215e-4
chr16	89304309	89304408	6659852	0	-	0.545455	(0.523,0.58]	chr16	666658	23	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	2656	2	7.67221	7.81492	7.95763	4.58499e-6	1.26939e-9	0.00130461	1.53374e-6
chr5	148393117	148393216	2562860	0	+	0.464646	(0.45,0.485]	chr5	254487	32	INTRON	INTRON	FBXO38	ENSG00000145868.17	ENST00000296701.10:ENST00000503613.5:ENST00000340253.10:ENST00000394370.7:ENST00000508326.5:ENST00000509411.5:ENST00000511080.5:ENST00000504971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	356	2	7.66031	7.814575	7.96884	2.9036e-4	8.50368e-6	0.00968387	4.57175e-4
chr1	8601703	8601802	393567	0	-	0.474747	(0.45,0.485]	chr1	45045	110	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	2057	2	7.64931	7.813815	7.97832	6.38608e-6	1.01286e-8	0.00153039	5.41154e-6
chr2	3295101	3295201	1081058	0	-	0.54	(0.523,0.58]	chr2	117633	124	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	350	2	7.54559	7.813235000000001	8.08088	5.51177e-4	1.50275e-6	0.0136794	1.372e-4
chr11	70658129	70658229	5060856	0	-	0.58	(0.523,0.58]	chr11	492672	33	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	1255	2	6.10255	7.81302	9.52349	5.19682e-5	1.10032e-8	0.0040042	5.73893e-6
chr21	45134182	45134214	7629262	0	+	0.6875	(0.58,1]	chr21	797546	1	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5:ENST00000449478.1:ENST00000464215.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	335	2	7.6897	7.811825000000001	7.93395	1.35209e-4	7.09723e-7	0.00645702	8.36689e-5
chr1	31414509	31414598	80069	0	+	0.449438	(0.419,0.45]	chr1	9151	6	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SERINC2	ENSG00000168528.12	ENST00000373710.5:ENST00000536859.5:ENST00000487207.5:ENST00000373709.8:ENST00000536384.2:ENST00000491976.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	621	2	6.23716	7.811225	9.38529	8.82327e-4	3.47822e-5	0.0129974	0.00327084
chr2	36845867	36845967	1119346	0	-	0.48	(0.45,0.485]	chr2	122323	83	UTR3	UTR3:EXON_MRNA	STRN	ENSG00000115808.12	ENST00000263918.9	protein_coding	protein_coding	protein_coding	protein_coding	0	361	2	7.53895	7.810345	8.08174	2.30998e-4	1.24295e-5	0.00857329	5.98526e-4
chr2	134159167	134159267	895822	0	+	0.5	(0.485,0.523]	chr2	101196	316	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	353	2	7.63439	7.80948	7.98457	2.20906e-4	6.99649e-6	0.00839442	4.00488e-4
chr7	98881729	98881750	3425125	0	+	0.52381	(0.523,0.58]	chr7	330664	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	TRRAP:MIR3609	ENSG00000196367.14:ENSG00000266019.1	ENST00000417523.5:ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7:ENST00000582661.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	4	3869	2	7.62164	7.80857	7.9955	8.13986e-7	4.13724e-9	7.94453e-4	3.06094e-6
chr3	48425733	48425833	1766691	0	-	0.51	(0.485,0.523]	chr3	182282	4	SS3_PROX	SS3_PROX:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	2637	2	7.65596	7.808495000000001	7.96103	2.38983e-6	4.07018e-9	0.00111233	3.02465e-6
chr18	79357558	79357658	7099861	0	+	0.63	(0.58,1]	chr18	722963	90	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000426216.6:ENST00000307671.12:ENST00000490210.6:ENST00000590477.5:ENST00000589951.5:ENST00000588921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	339	2	7.66532	7.808445000000001	7.95157	7.27296e-5	1.86786e-6	0.00477445	1.59168e-4
chr12	772462	772561	5148824	0	+	0.414141	(0.39,0.419]	chr12	500570	178	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	0	405	2	7.12991	7.80827	8.48663	1.54036e-4	6.78033e-5	0.00691092	0.00205103
chr12	65931506	65931606	5256519	0	+	0.44	(0.419,0.45]	chr12	512321	161	INTRON	INTRON	HMGA2	ENSG00000149948.14	ENST00000403681.7:ENST00000541363.5:ENST00000393577.7:ENST00000539662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	356	2	7.69097	7.80763	7.92429	8.81239e-4	7.84779e-6	0.0176886	4.32984e-4
chr5	649210	649309	2378774	0	+	0.555556	(0.523,0.58]	chr5	237646	9	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	353	2	7.41907	7.80638	8.19369	7.11773e-4	1.03241e-6	0.0157569	1.06505e-4
chr17	78815927	78816025	6979623	0	-	0.336735	(0.33,0.36]	chr17	712698	10	INTRON	INTRON	USP36	ENSG00000055483.20	ENST00000589225.5:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10:ENST00000588086.6:ENST00000588467.5:ENST00000586066.3:ENST00000590312.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	354	2	7.52562	7.806235	8.08685	7.42659e-4	2.99059e-6	0.0160891	2.19518e-4
chr11	70764767	70764867	5061929	0	-	0.5	(0.485,0.523]	chr11	492701	469	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	1014	2	6.1603	7.80564	9.45098	9.58253e-6	7.02104e-7	0.00184506	8.30977e-5
chr19	7640197	7640252	7199317	0	+	0.509091	(0.485,0.523]	chr19	733971	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STXBP2	ENSG00000076944.17	ENST00000593535.5:ENST00000595950.5:ENST00000221283.10:ENST00000441779.6:ENST00000597068.5:ENST00000414284.6:ENST00000599737.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	348	2	7.55531	7.805195	8.05508	5.34747e-4	1.77906e-6	0.0134768	1.53934e-4
chr7	241603	241703	3306071	0	+	0.49	(0.485,0.523]	chr7	320161	323	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	348	2	7.55531	7.805195	8.05508	5.34747e-4	1.77906e-6	0.0134768	1.53934e-4
chr5	32158063	32158163	2630495	0	-	0.26	[0,0.29]	chr5	261026	138	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	340	2	7.61157	7.805085	7.9986	1.90662e-4	1.36998e-6	0.00779123	1.28826e-4
chr5	139652165	139652265	2549682	0	+	0.45	(0.419,0.45]	chr5	253168	6	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	0	357	2	7.74819	7.805070000000001	7.86195	6.42272e-4	1.32446e-5	0.0148938	6.28604e-4
chr6	16759956	16760056	3104453	0	-	0.69	(0.58,1]	chr6	300919	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000675689.1:ENST00000473388.6:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1:ENST00000676138.1:ENST00000467008.5:ENST00000498374.1:ENST00000492857.1:ENST00000479680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	1291	2	5.67964	7.804259999999999	9.92888	5.53226e-7	3.05653e-7	7.30832e-4	4.7975e-5
chr16	89304112	89304210	6659850	0	-	0.571429	(0.523,0.58]	chr16	666658	21	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	1012	2	6.60668	7.80424	9.0018	2.57955e-5	1.41773e-7	0.00291091	2.90724e-5
chr19	51362092	51362192	7399212	0	-	0.43	(0.419,0.45]	chr19	769745	3	SS3_PROX	SS3_PROX:INTRON	ETFB:ENSG00000268520	ENSG00000105379.10:ENSG00000268520.1	ENST00000309244.9:ENST00000596253.1:ENST00000593992.1:ENST00000595500.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	0	365	2	7.54756	7.803889999999999	8.06022	4.43488e-4	2.38821e-5	0.0121128	9.56571e-4
chr15	28652682	28652781	6068885	0	+	0.525253	(0.523,0.58]	chr15	596168	7	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	0	345	2	7.679	7.802605	7.92621	4.19964e-4	2.5058e-6	0.011772	1.94472e-4
chr19	1171333	1171433	7305766	0	-	0.48	(0.45,0.485]	chr19	753058	23	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	350	2	7.73589	7.80231	7.86873	3.55262e-4	6.70327e-6	0.0107631	3.88203e-4
chr12	122093562	122093662	5343524	0	+	0.49	(0.485,0.523]	chr12	521864	139	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	357	2	7.52035	7.802265	8.08418	1.79417e-4	1.00801e-5	0.00754111	5.15349e-4
chr16	73055751	73055850	6627968	0	-	0.565657	(0.523,0.58]	chr16	663553	78	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2:ENST00000397992.5	protein_coding	protein_coding	protein_coding	protein_coding	0	347	2	7.72506	7.801095	7.87713	2.79345e-4	4.84091e-6	0.00949286	3.08192e-4
chr3	124746678	124746778	1555439	0	+	0.52	(0.485,0.523]	chr3	164821	27	UTR3	UTR3:EXON_MRNA	UMPS	ENSG00000114491.14	ENST00000232607.7	protein_coding	protein_coding	protein_coding	protein_coding	0	362	2	7.44278	7.8009900000000005	8.1592	1.53304e-4	1.29007e-5	0.00689544	6.14919e-4
chr16	75234035	75234123	6644446	0	-	0.602273	(0.58,1]	chr16	664405	1	SS3_PROX	SS3_PROX:INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000566982.1:ENST00000563038.5:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	333	2	7.79051	7.8004999999999995	7.81049	1.06611e-4	1.10937e-6	0.00577026	1.11442e-4
chr17	80224136	80224236	6806860	0	+	0.48	(0.45,0.485]	chr17	687275	4	INTRON	INTRON	SLC26A11	ENSG00000181045.15	ENST00000361193.8:ENST00000546047.6:ENST00000411502.7:ENST00000571888.5:ENST00000576126.5:ENST00000572725.5:ENST00000571564.5:ENST00000571176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	350	2	7.71736	7.80041	7.88346	3.44891e-4	7.10655e-6	0.0106242	4.04994e-4
chr16	29271213	29271313	6433549	0	+	0.5	(0.485,0.523]	chr16	636745	191	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	4	1508	2	5.26569	7.799495	10.3333	3.82253e-6	1.38017e-6	9.46456e-4	2.62442e-4
chr17	38919775	38919875	6730079	0	+	0.55	(0.523,0.58]	chr17	676475	11	UTR3	UTR3:EXON_MRNA	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000318008.11:ENST00000435347.7	protein_coding	protein_coding	protein_coding	protein_coding	0	357	2	7.50224	7.799379999999999	8.09652	1.76975e-4	9.94429e-6	0.00747595	5.11988e-4
chr11	61272698	61272798	5041303	0	-	0.44	(0.419,0.45]	chr11	488757	1	SS5_PROX	SS5_PROX:INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10:ENST00000535710.1:ENST00000398808.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	1089	2	6.01566	7.79921	9.58276	2.36278e-5	2.79081e-6	0.00280475	2.08969e-4
chr19	7639894	7639981	7199313	0	+	0.45977	(0.45,0.485]	chr19	733969	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	STXBP2	ENSG00000076944.17	ENST00000593535.5:ENST00000595950.5:ENST00000221283.10:ENST00000441779.6:ENST00000595181.5:ENST00000597068.5:ENST00000414284.6:ENST00000599737.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	347	2	7.69587	7.79842	7.90097	5.02031e-4	3.97196e-6	0.0129939	2.69241e-4
chr19	11553449	11553547	7332769	0	-	0.653061	(0.58,1]	chr19	758564	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ELOF1	ENSG00000130165.10	ENST00000586683.5:ENST00000252445.7:ENST00000587806.5:ENST00000589171.5:ENST00000591674.5	protein_coding	protein_coding	protein_coding	protein_coding	1	690	2	6.80575	7.7965	8.78725	9.56511e-6	1.19279e-7	0.00184506	2.6084e-5
chr19	735287	735364	7184604	0	+	0.662338	(0.58,1]	chr19	730570	2	SS5_PROX	SS5_PROX:INTRON	PALM	ENSG00000099864.18	ENST00000338448.10:ENST00000264560.11:ENST00000589012.5:ENST00000593172.5:ENST00000633534.1:ENST00000592155.5:ENST00000590161.2:ENST00000587513.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	409	2	6.9229	7.793565	8.66423	2.46059e-5	1.29442e-5	0.00209785	9.771e-4
chr14	54625991	54626091	5820033	0	+	0.59	(0.58,1]	chr14	569049	575	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	869	2	6.90204	7.792035	8.68203	7.3666e-6	4.47092e-8	0.00163362	1.4035e-5
chr2	239281277	239281377	1391521	0	-	0.44	(0.419,0.45]	chr2	148740	297	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	378	2	7.15805	7.792014999999999	8.42598	0.0023114	1.72253e-6	0.0302623	1.50516e-4
chr1	42850079	42850158	105839	0	+	0.455696	(0.45,0.485]	chr1	12814	4	SS5_PROX	SS5_PROX:INTRON	ZNF691	ENSG00000164011.18	ENST00000372502.5:ENST00000372508.7:ENST00000651192.1:ENST00000372507.5:ENST00000372506.5:ENST00000372504.5:ENST00000397034.3:ENST00000372503.2	protein_coding	protein_coding	protein_coding	protein_coding	0	347	2	7.55572	7.7912	8.02668	6.62812e-4	2.65779e-6	0.0151276	2.014e-4
chr15	65706424	65706524	6305388	0	-	0.34	(0.33,0.36]	chr15	621720	2	SS3_PROX	SS3_PROX:INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000635620.2:ENST00000564674.5	protein_coding	protein_coding	protein_coding	protein_coding	0	358	2	7.51521	7.79094	8.06667	2.53606e-4	1.7456e-5	0.00901812	7.63142e-4
chr17	35718247	35718346	6724039	0	+	0.444444	(0.419,0.45]	chr17	675614	5	INTRON	INTRON	AP2B1	ENSG00000006125.18	ENST00000621914.4:ENST00000620039.4:ENST00000616681.4:ENST00000610402.5:ENST00000612116.5:ENST00000618940.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	380	2	7.30236	7.79073	8.2791	2.9351e-4	4.85572e-5	0.00972826	0.00161039
chr2	200979281	200979381	1355619	0	-	0.38	(0.36,0.39]	chr2	144097	57	UTR3	UTR3:EXON_MRNA	FAM126B	ENSG00000155744.10	ENST00000681958.1:ENST00000418596.7:ENST00000286181.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	358	2	7.55668	7.790395	8.02411	3.65027e-4	1.92152e-5	0.0109641	8.19063e-4
chr19	47229637	47229736	7392378	0	-	0.565657	(0.523,0.58]	chr19	768106	8	INTRON	INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	1	900	2	6.43068	7.790279999999999	9.14988	6.84088e-5	4.00998e-8	0.00462008	1.30011e-5
chr22	50234225	50234324	7827203	0	-	0.606061	(0.58,1]	chr22	821200	3	INTRON	INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	330	2	7.65447	7.78997	7.92547	1.46869e-4	7.319e-7	0.00675599	8.52139e-5
chr1	48227659	48227757	120976	0	+	0.530612	(0.523,0.58]	chr1	15165	25	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	748	2	6.55302	7.7892	9.02538	2.45159e-5	8.58029e-7	0.00284264	9.48667e-5
chr4	3179625	3179722	2003664	0	+	0.536082	(0.523,0.58]	chr4	204462	8	INTRON	INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000680291.1:ENST00000510626.5:ENST00000509043.1:ENST00000513326.5:ENST00000513639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	342	2	7.76154	7.78876	7.81598	3.54552e-4	3.59812e-6	0.0107472	2.5106e-4
chr13	113058296	113058396	5656220	0	+	0.56	(0.523,0.58]	chr13	555189	35	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	347	2	7.62802	7.78868	7.94934	2.4051e-4	6.63212e-6	0.00875172	3.85278e-4
chr7	139704043	139704143	3723186	0	-	0.55	(0.523,0.58]	chr7	357498	720	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	343	2	7.75294	7.78864	7.82434	3.11537e-4	4.42065e-6	0.0100453	2.8801e-4
chr17	72554132	72554232	6963852	0	-	0.48	(0.45,0.485]	chr17	710389	197	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	2	2209	2	6.77056	7.7886049999999996	8.80665	4.12569e-5	6.03101e-10	0.00356392	9.83382e-7
chr4	10100825	10100923	2195658	0	-	0.5	(0.485,0.523]	chr4	222412	13	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	343	2	7.7676	7.788465	7.80933	3.17729e-4	4.55136e-6	0.0101378	2.94841e-4
chr5	111741795	111741895	2741561	0	-	0.44	(0.419,0.45]	chr5	269024	59	INTRON	INTRON	NREP	ENSG00000134986.14	ENST00000514515.5:ENST00000509025.5:ENST00000379671.7:ENST00000257435.12:ENST00000447165.6:ENST00000446294.6:ENST00000395634.7:ENST00000515855.5:ENST00000507742.5:ENST00000509979.5:ENST00000450761.6:ENST00000419114.6:ENST00000509427.5:ENST00000453526.6:ENST00000455559.6:ENST00000508870.5:ENST00000513100.5:ENST00000504018.1:ENST00000508161.5:ENST00000503429.1:ENST00000505864.5:ENST00000507032.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	432	2	6.91441	7.788425	8.66244	1.45031e-4	1.41253e-4	0.00662409	0.00359413
chr11	70764367	70764467	5061925	0	-	0.51	(0.485,0.523]	chr11	492701	465	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	354	2	7.49861	7.7881800000000005	8.07775	1.81848e-4	1.08033e-5	0.00759001	5.4404e-4
chr7	127707747	127707847	3468790	0	+	0.44	(0.419,0.45]	chr7	335369	1	SS5_PROX	SS5_PROX:INTRON	SND1	ENSG00000197157.11	ENST00000354725.8	protein_coding	protein_coding	protein_coding	protein_coding	1	793	2	6.58061	7.788005	8.9954	7.43007e-5	2.08556e-6	0.00481728	1.71281e-4
chr19	8249130	8249229	7200375	0	+	0.555556	(0.523,0.58]	chr19	734198	73	INTRON	INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	372	2	7.27752	7.78777	8.29802	1.15904e-4	2.03194e-5	0.00598993	8.47843e-4
chr17	77484726	77484826	6805229	0	+	0.54	(0.523,0.58]	chr17	686821	7	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	348	2	7.59759	7.787415	7.97724	2.26961e-4	7.31734e-6	0.00851514	4.11658e-4
chr21	45453123	45453223	7630794	0	+	0.41	(0.39,0.419]	chr21	797656	473	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	1	779	2	6.74991	7.78597	8.82203	7.93587e-5	1.03115e-6	0.00494878	1.06505e-4
chr13	97368650	97368750	5632278	0	+	0.38	(0.36,0.39]	chr13	553226	17	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000449284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	1267	2	5.82157	7.785735000000001	9.7499	1.16353e-5	2.03024e-6	0.00199424	1.68215e-4
chr12	125120846	125120945	5349510	0	+	0.474747	(0.45,0.485]	chr12	523174	11	EXON_MRNA	EXON_MRNA:INTRON	AACS	ENSG00000081760.17	ENST00000316519.11:ENST00000441247.6:ENST00000316543.14:ENST00000539251.5:ENST00000538851.5:ENST00000545511.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	346	2	7.52785	7.784750000000001	8.04165	7.00252e-4	2.53318e-6	0.0156107	1.95334e-4
chr6	3146549	3146648	2828604	0	+	0.616162	(0.58,1]	chr6	277604	57	INTRON	INTRON	BPHL	ENSG00000137274.13	ENST00000434640.5:ENST00000430655.6:ENST00000424847.6:ENST00000433912.5:ENST00000380379.10:ENST00000490918.5:ENST00000380375.4:ENST00000488487.2:ENST00000423798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	362	2	7.24245	7.784475	8.3265	2.95127e-5	8.27171e-6	0.00305784	4.48419e-4
chr13	50573498	50573598	5598360	0	+	0.47	(0.45,0.485]	chr13	551685	398	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1:ENST00000484869.6	lncRNA	lncRNA	lncRNA	lncRNA	2	1053	2	5.89682	7.78424	9.67166	8.38597e-6	2.17022e-6	0.0017508	1.76047e-4
chr6	158243394	158243494	3060949	0	+	0.32	(0.29,0.33]	chr6	297572	107	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	343	2	7.5152	7.782415	8.04963	4.91293e-4	2.05303e-6	0.0128672	1.69518e-4
chr2	3269377	3269476	1080799	0	-	0.474747	(0.45,0.485]	chr2	117623	69	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	357	2	7.28315	7.782195	8.28124	0.00112952	1.16915e-6	0.0202727	1.15638e-4
chr1	3470187	3470282	5810	0	+	0.673684	(0.58,1]	chr1	1229	2	INTRON	INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5	protein_coding	protein_coding	protein_coding	protein_coding	0	353	2	7.32211	7.781065	8.24002	3.6386e-5	6.27279e-6	0.0033235	3.69646e-4
chr2	232888507	232888607	1383716	0	-	0.5	(0.485,0.523]	chr2	147928	4	SS3_PROX	SS3_PROX:INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000424488.5:ENST00000461944.1:ENST00000416114.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	343	2	7.68339	7.780475	7.87756	2.75909e-4	5.97548e-6	0.00944319	3.5765e-4
chr9	131586262	131586359	4418979	0	-	0.536082	(0.523,0.58]	chr9	421909	13	INTRON	INTRON	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000372189.7:ENST00000683357.1:ENST00000372190.7	protein_coding	protein_coding	protein_coding	protein_coding	0	372	2	7.25169	7.780365	8.30904	0.00011323999999999999	2.20409e-5	0.00593833	9.00215e-4
chr12	122093662	122093762	5343525	0	+	0.58	(0.523,0.58]	chr12	521864	140	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	354	2	7.45775	7.78031	8.10287	1.74642e-4	1.14664e-5	0.00740488	5.66227e-4
chr12	125120945	125121044	5349511	0	+	0.50505	(0.485,0.523]	chr12	523174	12	EXON_MRNA	EXON_MRNA:INTRON	AACS	ENSG00000081760.17	ENST00000316519.11:ENST00000441247.6:ENST00000316543.14:ENST00000539251.5:ENST00000538851.5:ENST00000545511.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	340	2	7.66234	7.7801100000000005	7.89788	4.29834e-4	2.979e-6	0.011904	2.18763e-4
chr1	1029926	1030025	1014	0	+	0.525253	(0.523,0.58]	chr1	166	71	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	342	2	7.69662	7.77943	7.86224	2.88079e-4	5.30976e-6	0.00964028	3.28939e-4
chr8	47882597	47882695	3973156	0	-	0.469388	(0.45,0.485]	chr8	380027	1	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	0	352	2	7.34832	7.77923	8.21014	9.95275e-4	1.47201e-6	0.0189547	1.35091e-4
chr8	9586682	9586782	3753003	0	+	0.3	(0.29,0.33]	chr8	360707	59	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000520408.5:ENST00000518281.5	protein_coding	protein_coding	protein_coding	protein_coding	0	343	2	7.65854	7.7788900000000005	7.89924	2.1936e-4	7.24449e-6	0.00837681	4.09796e-4
chr6	36680273	36680373	2906392	0	+	0.67	(0.58,1]	chr6	285236	4	SS3_PROX	SS3_PROX:INTRON	CDKN1A	ENSG00000124762.14	ENST00000615513.4:ENST00000448526.6:ENST00000459970.1:ENST00000405375.5:ENST00000244741.10:ENST00000373711.3:ENST00000478800.1:ENST00000462537.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	685	2	6.97915	7.778345	8.57754	1.60085e-5	6.21577e-8	0.00230554	1.71133e-5
chr6	169621551	169621651	3304072	0	-	0.43	(0.419,0.45]	chr6	319826	75	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	372	2	7.16994	7.778175	8.38641	0.00226312	1.94371e-6	0.0300628	1.63137e-4
chr1	40309637	40309737	451996	0	-	0.44	(0.419,0.45]	chr1	54429	3	SS5_PROX	SS5_PROX:INTRON	COL9A2	ENSG00000049089.15	ENST00000372748.8:ENST00000482722.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	366	2	7.40775	7.77737	8.14699	3.76722e-4	3.58484e-5	0.011139	0.00128261
chr19	8249030	8249130	7200374	0	+	0.45	(0.419,0.45]	chr19	734198	72	INTRON	INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	353	2	7.62732	7.776885	7.92645	5.69601e-4	1.89098e-5	0.0139502	8.09334e-4
chr16	570960	571060	6368124	0	+	0.57	(0.523,0.58]	chr16	627949	2	SS5_PROX	SS5_PROX:INTRON	PIGQ	ENSG00000007541.17	ENST00000293874.2:ENST00000409527.6:ENST00000321878.10:ENST00000439574.1:ENST00000422307.6:ENST00000636657.1:ENST00000026218.9:ENST00000470411.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	350	2	7.50224	7.776769999999999	8.0513	1.94511e-4	9.94429e-6	0.00785001	5.11988e-4
chr20	34073162	34073262	7460404	0	+	0.41	(0.39,0.419]	chr20	776608	2	SS3_PROX	SS3_PROX:INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000413297.5:ENST00000246194.8:ENST00000333552.9:ENST00000442805.1:ENST00000493399.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	1258	2	6.20721	7.7755849999999995	9.34396	2.79357e-5	6.06073e-7	0.00298241	7.52866e-5
chr12	132536651	132536750	5352982	0	+	0.474747	(0.45,0.485]	chr12	523670	83	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	928	2	5.96857	7.775575	9.58258	2.19508e-4	1.56415e-8	0.00837702	6.99695e-6
chr12	132950562	132950662	5542037	0	-	0.49	(0.485,0.523]	chr12	547064	19	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	345	2	7.40929	7.7755350000000005	8.14178	7.18613e-4	1.33642e-6	0.0158219	1.27021e-4
chr5	1328205	1328304	2609097	0	-	0.494949	(0.485,0.523]	chr5	259719	19	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	356	2	7.2237	7.774789999999999	8.32588	0.00104165	7.25243e-7	0.0193905	8.48201e-5
chr6	36065413	36065513	2904675	0	+	0.53	(0.523,0.58]	chr6	284907	57	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000622903.4:ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5:ENST00000472333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	348	2	7.52398	7.774395	8.02481	2.05561e-4	9.2742e-6	0.00809983	4.87501e-4
chr16	1738224	1738323	6371321	0	+	0.545455	(0.523,0.58]	chr16	628851	28	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	340	2	7.51737	7.77299	8.02861	5.83644e-4	1.78701e-6	0.0141349	1.54304e-4
chr8	128040971	128041070	3920291	0	+	0.434343	(0.419,0.45]	chr8	374321	7	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	0	362	2	7.27275	7.772975	8.2732	0.00188399	2.74337e-6	0.0271069	2.06054e-4
chr14	103638882	103638982	5924206	0	+	0.54	(0.523,0.58]	chr14	579587	90	INTRON	INTRON	KLC1	ENSG00000126214.22	ENST00000557172.5:ENST00000348520.10:ENST00000380038.7:ENST00000334553.11:ENST00000555467.1:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	339	2	7.55488	7.77248	7.99008	5.40881e-4	2.02984e-6	0.0135788	1.68215e-4
chr1	30933342	30933442	434607	0	-	0.52	(0.485,0.523]	chr1	51444	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000530669.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	338	2	7.65372	7.771635	7.88955	4.37486e-4	3.06111e-6	0.0120003	2.22941e-4
chr19	1170737	1170836	7305760	0	-	0.545455	(0.523,0.58]	chr19	753058	17	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	338	2	7.7535	7.7714	7.7893	3.60464e-4	3.92607e-6	0.0108631	2.66734e-4
chr11	65429463	65429563	4871636	0	+	0.39	(0.36,0.39]	chr11	468177	68	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	26	22138	2	7.25279	7.771185000000001	8.28958	1.93265e-6	2.03441e-10	0.0010171	5.33862e-7
chr19	17484621	17484717	7220779	0	+	0.447917	(0.419,0.45]	chr19	738265	1	INTRON	INTRON	SLC27A1	ENSG00000130304.17	ENST00000600277.5:ENST00000598424.5:ENST00000252595.12:ENST00000599380.5:ENST00000600297.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	350	2	7.6656	7.771065	7.87653	6.2509e-4	1.6898e-5	0.0146839	7.44477e-4
chr17	78718222	78718322	6978672	0	-	0.47	(0.45,0.485]	chr17	712611	13	INTRON	INTRON	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000589297.5:ENST00000591574.5:ENST00000590775.5:ENST00000589768.5:ENST00000586043.5:ENST00000587308.5:ENST00000590300.1:ENST00000591095.1:ENST00000592497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	369	2	7.27324	7.77028	8.26732	1.58217e-4	2.82126e-5	0.00703828	0.00107564
chr12	26451337	26451436	5397723	0	-	0.474747	(0.45,0.485]	chr12	528476	73	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000451599.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	341	2	7.76325	7.77013	7.77701	4.26981e-4	6.14862e-6	0.0118572	3.6476e-4
chr6	129668281	129668381	3259498	0	-	0.43	(0.419,0.45]	chr6	315424	259	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	0	347	2	7.75551	7.76947	7.78343	7.82328e-4	1.19326e-5	0.0165897	5.82737e-4
chr6	16685027	16685126	3103695	0	-	0.434343	(0.419,0.45]	chr6	300893	171	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6:ENST00000495178.1:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	364	2	7.39642	7.768689999999999	8.14096	3.81024e-4	3.70422e-5	0.0111772	0.00131524
chr19	32983144	32983244	7363829	0	-	0.49	(0.485,0.523]	chr19	763279	25	INTRON	INTRON	RHPN2	ENSG00000131941.8	ENST00000254260.8:ENST00000544458.6:ENST00000588388.5:ENST00000588683.1:ENST00000592247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	354	2	7.40822	7.768315	8.12841	1.63536e-4	1.43934e-5	0.00716861	6.61734e-4
chr17	15465661	15465761	6860091	0	-	0.44	(0.419,0.45]	chr17	695067	122	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	355	2	7.35837	7.76773	8.17709	0.00161543	3.67084e-6	0.0248769	2.55175e-4
chr9	123531588	123531687	4397892	0	-	0.30303	(0.29,0.33]	chr9	419652	456	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	345	2	7.53632	7.76735	7.99838	1.77646e-4	1.06782e-5	0.00749849	5.39197e-4
chr22	46639356	46639456	7744571	0	+	0.52	(0.485,0.523]	chr22	812052	10	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	0	340	2	7.65419	7.765874999999999	7.87756	2.75909e-4	6.56483e-6	0.00944319	3.8256e-4
chr6	3146648	3146747	2828605	0	+	0.575758	(0.523,0.58]	chr6	277604	58	INTRON	INTRON	BPHL	ENSG00000137274.13	ENST00000434640.5:ENST00000430655.6:ENST00000424847.6:ENST00000433912.5:ENST00000380379.10:ENST00000490918.5:ENST00000380375.4:ENST00000488487.2:ENST00000423798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	365	2	7.26466	7.764555	8.26445	1.24404e-4	2.11593e-5	0.00618972	8.73984e-4
chr1	12582955	12583055	402432	0	-	0.54	(0.523,0.58]	chr1	46222	19	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	359	2	7.32782	7.764305	8.20079	1.42232e-4	1.73343e-5	0.0066525	7.59912e-4
chr1	214005871	214005970	339537	0	+	0.515152	(0.485,0.523]	chr1	38103	2	INTRON	INTRON	PROX1	ENSG00000117707.16	ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2	protein_coding	protein_coding	protein_coding	protein_coding	0	336	2	7.66234	7.763305000000001	7.86427	4.29834e-4	3.32419e-6	0.011904	2.36181e-4
chr1	1029627	1029727	1011	0	+	0.52	(0.485,0.523]	chr1	166	68	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	337	2	7.55531	7.763025000000001	7.97074	5.34747e-4	2.34708e-6	0.0134768	1.86023e-4
chr2	232900564	232900663	1383844	0	-	0.464646	(0.45,0.485]	chr2	147952	53	INTRON	INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000416114.3:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	346	2	7.36941	7.76277	8.15613	9.55229e-4	1.75259e-6	0.0184882	1.52193e-4
chr14	103105472	103105572	5921873	0	+	0.67	(0.58,1]	chr14	579220	4	SS5_PROX	SS5_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	803	2	6.48023	7.762585	9.04494	2.09262e-5	1.13689e-8	0.00265367	5.8931e-6
chr1	17676383	17676483	54975	0	+	0.59	(0.58,1]	chr1	5603	114	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	932	2	5.99212	7.76238	9.53264	1.49844e-6	4.24386e-7	9.54163e-4	5.94445e-5
chr16	89304408	89304507	6659853	0	-	0.515152	(0.485,0.523]	chr16	666658	24	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	1992	2	6.96494	7.762255000000001	8.55957	2.12857e-5	9.17738e-10	0.00267833	1.23304e-6
chr9	137723259	137723359	4265523	0	+	0.66	(0.58,1]	chr9	407352	56	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000460486.3:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	338	2	7.23289	7.7621649999999995	8.29144	3.89345e-4	1.91517e-7	0.0113333	3.55758e-5
chr22	32671758	32671858	7791376	0	-	0.53	(0.523,0.58]	chr22	817442	415	INTRON	INTRON	SYN3	ENSG00000185666.15	ENST00000358763.7:ENST00000462268.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	353	2	7.19977	7.76155	8.32333	0.00110271	6.69056e-7	0.020005	8.03758e-5
chr14	31163099	31163199	5952687	0	-	0.54	(0.523,0.58]	chr14	583296	54	INTRON	INTRON	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000691390.1:ENST00000553957.6:ENST00000687002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	343	2	7.54539	7.761315	7.97724	2.26961e-4	8.65732e-6	0.00851514	4.62898e-4
chr12	23831884	23831984	5387340	0	-	0.42	(0.419,0.45]	chr12	528175	689	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000537393.5:ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	381	2	7.02037	7.7611799999999995	8.50199	0.00294696	1.36503e-6	0.0344907	1.28648e-4
chr17	66509168	66509268	6785497	0	+	0.42	(0.419,0.45]	chr17	684238	125	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	367	2	7.15805	7.760675000000001	8.3633	0.0023114	2.0856e-6	0.0302623	1.71281e-4
chr5	95768998	95769092	2485053	0	+	0.457447	(0.45,0.485]	chr5	247584	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	RHOBTB3:HSPD1P11	ENSG00000164292.13:ENSG00000251348.1	ENST00000379982.8:ENST00000504179.5:ENST00000510313.1:ENST00000508643.1	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	0	385	2	6.91846	7.76035	8.60224	0.00226513	4.09835e-7	0.0300628	5.80356e-5
chr13	113332571	113332671	5753256	0	-	0.57	(0.523,0.58]	chr13	564094	61	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	0	335	2	7.71259	7.759865	7.80714	3.92044e-4	3.70366e-6	0.0113511	2.56925e-4
chr9	129609976	129610075	4250930	0	+	0.606061	(0.58,1]	chr9	404743	4	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	0	362	2	7.15814	7.758915	8.35969	2.72287e-5	1.10629e-5	0.00294944	5.52474e-4
chr2	73852820	73852920	833280	0	+	0.48	(0.45,0.485]	chr2	94127	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STAMBP	ENSG00000124356.17	ENST00000339566.7:ENST00000684095.1:ENST00000682847.1:ENST00000683317.1:ENST00000683036.1:ENST00000682157.1:ENST00000683349.1:ENST00000684337.1:ENST00000683247.1:ENST00000682683.1:ENST00000682329.1:ENST00000683149.1:ENST00000682851.1:ENST00000394070.7:ENST00000683728.1:ENST00000409707.6:ENST00000683518.1:ENST00000684585.1:ENST00000683434.1:ENST00000682352.1:ENST00000684697.1:ENST00000682592.1:ENST00000683718.1:ENST00000682423.1:ENST00000478946.2:ENST00000684200.1:ENST00000684355.1:ENST00000684774.1:ENST00000536064.2:ENST00000683465.1:ENST00000684716.1:ENST00000683016.1:ENST00000684174.1:ENST00000684703.1:ENST00000682799.1:ENST00000682998.1:ENST00000682379.1:ENST00000684312.1:ENST00000683852.1:ENST00000684321.1:ENST00000394073.6:ENST00000684671.1:ENST00000682848.1:ENST00000683877.1:ENST00000683530.1:ENST00000683027.1:ENST00000683304.1:ENST00000682784.1:ENST00000683205.1:ENST00000682351.1:ENST00000683818.1:ENST00000684426.1:ENST00000683582.1:ENST00000683417.1:ENST00000683594.1:ENST00000682387.1:ENST00000682747.1:ENST00000682105.1:ENST00000683928.1:ENST00000683391.1:ENST00000684758.1:ENST00000682558.1:ENST00000683902.1:ENST00000432295.7:ENST00000486458.2:ENST00000683314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	342	2	7.61098	7.7581299999999995	7.90528	3.30071e-4	9.92605e-6	0.0103581	5.11988e-4
chr16	89429955	89430055	6661133	0	-	0.5	(0.485,0.523]	chr16	666747	112	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	1197	2	6.38975	7.75779	9.12583	1.94319e-5	1.4055e-7	0.00253633	2.89215e-5
chr16	57744711	57744811	6467072	0	+	0.5	(0.485,0.523]	chr16	641648	2	SS5_PROX	SS5_PROX:INTRON	KATNB1	ENSG00000140854.13	ENST00000562592.5:ENST00000379661.8:ENST00000566726.5:ENST00000566611.5:ENST00000569627.1:ENST00000563127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	346	2	7.29196	7.757765000000001	8.22357	9.09246e-4	1.01923e-6	0.0180048	1.0586e-4
chrX	48465514	48465614	8040343	0	-	0.48	(0.45,0.485]	chrX	838612	1	SS5_PROX	SS5_PROX:INTRON	SLC38A5	ENSG00000017483.16	ENST00000595796.5:ENST00000619100.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5:ENST00000416711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	362	2	7.11854	7.75745	8.39636	0.00155043	8.03999e-7	0.0243127	9.11123e-5
chr5	654079	654177	2378824	0	+	0.561224	(0.523,0.58]	chr5	237653	5	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000499639.2	protein_coding	processed_transcript	protein_coding	processed_transcript	0	335	2	7.56411	7.757300000000001	7.95049	5.30836e-4	2.31313e-6	0.0134466	1.84376e-4
chr1	8552883	8552983	393075	0	-	0.53	(0.523,0.58]	chr1	45029	112	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000469251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	334	2	7.679	7.75625	7.8335	4.19964e-4	3.3976e-6	0.011772	2.40562e-4
chr10	127261124	127261224	4610538	0	+	0.56	(0.523,0.58]	chr10	440799	33	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2:ENST00000484400.5:ENST00000464466.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	766	2	7.24061	7.755355	8.2701	1.22932e-4	8.18817e-8	0.00615337	2.09311e-5
chr3	140950827	140950927	1585860	0	+	0.43	(0.419,0.45]	chr3	167506	77	INTRON	INTRON	SLC25A36	ENSG00000114120.14	ENST00000446041.6:ENST00000324194.12:ENST00000648615.1:ENST00000502756.1:ENST00000393015.8:ENST00000515813.1:ENST00000507429.5:ENST00000502594.5:ENST00000453248.6:ENST00000631654.1:ENST00000513887.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	353	2	7.49538	7.755089999999999	8.0148	4.82909e-4	2.78044e-5	0.0127255	0.00106588
chr3	184319343	184319424	1643921	0	+	0.518519	(0.485,0.523]	chr3	172597	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000444134.5:ENST00000442406.5:ENST00000450424.5:ENST00000421110.5:ENST00000435046.7:ENST00000382330.7:ENST00000413967.5:ENST00000426123.5:ENST00000346169.7:ENST00000350481.9:ENST00000440448.5:ENST00000427141.6:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000456033.5:ENST00000411531.5:ENST00000444861.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	726	2	6.64255	7.7548	8.86705	3.39831e-5	6.797e-7	0.00324013	8.13055e-5
chr1	44812713	44812804	115030	0	+	0.56044	(0.523,0.58]	chr1	14299	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BTBD19	ENSG00000222009.9	ENST00000450269.6:ENST00000409335.6:ENST00000439563.2:ENST00000485668.5:ENST00000482715.5:ENST00000475105.5:ENST00000495433.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	334	2	7.72909	7.754695	7.7803	3.78993e-4	4.04324e-6	0.011147	2.73258e-4
chr19	19005846	19005946	7349844	0	-	0.43	(0.419,0.45]	chr19	761880	8	INTRON	INTRON	SUGP2	ENSG00000064607.17	ENST00000594773.5:ENST00000337018.10:ENST00000452918.7:ENST00000330854.15:ENST00000601879.5:ENST00000600239.5:ENST00000600377.1:ENST00000598240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	343	2	7.6992	7.754255000000001	7.80931	8.67988e-4	1.10512e-5	0.0175702	5.52474e-4
chr16	81544681	81544781	6508740	0	+	0.41	(0.39,0.419]	chr16	645911	488	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	939	2	6.4979	7.7524	9.0069	1.03629e-4	2.21802e-7	0.00567813	3.91312e-5
chr2	238269569	238269665	1388929	0	-	0.489583	(0.485,0.523]	chr2	148518	2	INTRON	INTRON	PER2	ENSG00000132326.12	ENST00000254657.8:ENST00000355768.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	337	2	7.63439	7.7522649999999995	7.87014	2.80185e-4	6.99649e-6	0.00950092	4.00488e-4
chr21	46403575	46403674	7633015	0	+	0.575758	(0.523,0.58]	chr21	798231	7	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5	protein_coding	protein_coding	protein_coding	protein_coding	0	350	2	7.19977	7.752190000000001	8.30461	0.00110271	7.1241e-7	0.020005	8.36689e-5
chr6	158243793	158243893	3060953	0	+	0.4	(0.39,0.419]	chr6	297572	111	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	1024	2	6.13887	7.751894999999999	9.36492	2.67823e-5	1.60024e-6	0.00293676	1.43491e-4
chr16	431018	431118	6366839	0	+	0.44	(0.419,0.45]	chr16	627760	39	INTRON	INTRON	RAB11FIP3	ENSG00000090565.17	ENST00000262305.9:ENST00000434585.5	protein_coding	protein_coding	protein_coding	protein_coding	0	343	2	7.73924	7.75131	7.76338	7.71033e-4	1.35996e-5	0.0164417	6.39223e-4
chr14	25013435	25013534	5944265	0	-	0.434343	(0.419,0.45]	chr14	582953	24	INTRON	INTRON	STXBP6	ENSG00000168952.16	ENST00000323944.10:ENST00000396700.5:ENST00000419632.6:ENST00000546511.5:ENST00000548182.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	353	2	7.47397	7.750945	8.02792	4.7118e-4	2.959e-5	0.0125537	0.00111477
chr7	112203801	112203901	3692546	0	-	0.4	(0.39,0.419]	chr7	354969	1993	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	343	2	7.64552	7.75033	7.85514	5.25022e-4	1.49216e-5	0.0133335	6.82655e-4
chr16	72347067	72347167	6622024	0	-	0.47	(0.45,0.485]	chr16	663407	553	INTRON	INTRON	LINC01572	ENSG00000261008.8	ENST00000624829.4	lncRNA	lncRNA	lncRNA	lncRNA	0	344	2	7.51769	7.75014	7.98259	2.82402e-4	1.32798e-5	0.0095543	6.28604e-4
chr16	85388636	85388736	6516957	0	+	0.52	(0.485,0.523]	chr16	646391	293	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	373	2	7.13988	7.748965	8.35805	1.00792e-4	3.33392e-5	0.00560072	0.0012196
chr19	39158045	39158145	7259589	0	+	0.51	(0.485,0.523]	chr19	744161	8	INTRON	INTRON	PAK4	ENSG00000130669.17	ENST00000602004.1:ENST00000599470.5:ENST00000360442.8:ENST00000321944.8:ENST00000593480.5:ENST00000358301.7:ENST00000593690.5:ENST00000599386.5:ENST00000599657.5	protein_coding	protein_coding	protein_coding	protein_coding	0	333	2	7.74008	7.747005	7.75393	3.56163e-4	4.97573e-6	0.0107631	3.148e-4
chr16	1737141	1737239	6371310	0	+	0.591837	(0.58,1]	chr16	628851	17	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	328	2	7.3254	7.746465	8.16753	3.15151e-4	3.02353e-7	0.0100952	4.76798e-5
chr1	119726153	119726251	224066	0	+	0.520408	(0.485,0.523]	chr1	24645	8	INTRON	INTRON	PHGDH	ENSG00000092621.13	ENST00000641597.1:ENST00000493622.5:ENST00000641213.1:ENST00000641947.1:ENST00000642041.1:ENST00000641074.1:ENST00000641115.1:ENST00000642021.1:ENST00000641491.1:ENST00000641023.2:ENST00000369409.9:ENST00000641573.1:ENST00000641513.1:ENST00000641375.1:ENST00000641891.1:ENST00000641570.1:ENST00000641587.1:ENST00000641371.1:ENST00000462324.2:ENST00000641272.1:ENST00000641247.1:ENST00000641756.1:ENST00000641711.1:ENST00000641927.1:ENST00000641314.1:ENST00000369407.3:ENST00000641811.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	724	2	6.87295	7.74621	8.61947	5.77963e-5	3.11892e-7	0.00421984	4.86813e-5
chr19	1170836	1170935	7305761	0	-	0.474747	(0.45,0.485]	chr19	753058	18	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	335	2	7.58305	7.7461	7.90915	6.27968e-4	3.86971e-6	0.0147128	2.64726e-4
chr6	47232669	47232764	3143730	0	-	0.357895	(0.33,0.36]	chr6	306733	13	UTR3	UTR3:EXON_MRNA	TNFRSF21	ENSG00000146072.6	ENST00000296861.2	protein_coding	protein_coding	protein_coding	protein_coding	5	1547	2	5.90748	7.745835	9.58419	1.10187e-5	5.53843e-7	0.00195192	7.08421e-5
chr7	143385422	143385519	3510759	0	+	0.42268	(0.419,0.45]	chr7	338486	8	INTRON	INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	341	2	7.61473	7.74543	7.87613	0.00101372	9.06003e-6	0.0191342	4.79092e-4
chr8	133287959	133288059	4084204	0	-	0.42	(0.419,0.45]	chr8	388351	3	SS5_PROX	SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000676005.1:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1:ENST00000674839.1:ENST00000676064.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	2056	2	7.27442	7.745365	8.21631	1.14372e-5	3.26003e-6	0.00197597	2.33181e-4
chr19	45277822	45277922	7272383	0	+	0.58	(0.523,0.58]	chr19	746883	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MARK4	ENSG00000007047.16	ENST00000262891.9:ENST00000300843.8:ENST00000592762.5:ENST00000588621.5:ENST00000592207.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	332	2	7.73727	7.745105	7.75294	3.72681e-4	4.42065e-6	0.011082	2.8801e-4
chr5	175944335	175944435	2814730	0	-	0.45	(0.419,0.45]	chr5	275564	172	INTRON	INTRON	THOC3	ENSG00000051596.10	ENST00000432305.6:ENST00000515016.1	protein_coding	protein_coding	protein_coding	protein_coding	0	341	2	7.59722	7.744795	7.89237	0.00104675	8.6322e-6	0.0194601	4.62143e-4
chrX	48465417	48465514	8040342	0	-	0.505155	(0.485,0.523]	chrX	838611	21	INTRON	INTRON	SLC38A5	ENSG00000017483.16	ENST00000595796.5:ENST00000619100.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5:ENST00000416711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	362	2	7.03741	7.743705	8.45	0.0015038	4.7898e-7	0.0239138	6.43542e-5
chr1	42850242	42850321	105841	0	+	0.556962	(0.523,0.58]	chr1	12816	1	SS3_PROX	SS3_PROX:INTRON	ZNF691	ENSG00000164011.18	ENST00000372502.5:ENST00000372508.7:ENST00000651192.1:ENST00000372507.5:ENST00000372506.5:ENST00000372504.5:ENST00000397034.3:ENST00000372503.2	protein_coding	protein_coding	protein_coding	protein_coding	0	331	2	7.68747	7.74286	7.79825	4.12746e-4	3.81293e-6	0.0116511	2.62442e-4
chr1	17588779	17588879	54067	0	+	0.53	(0.523,0.58]	chr1	5464	3	SS5_PROX	SS5_PROX:INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5	protein_coding	protein_coding	protein_coding	protein_coding	0	341	2	7.48016	7.742385	8.00461	2.14394e-4	1.0673e-5	0.0082811	5.39197e-4
chr11	70777157	70777257	5062053	0	-	0.5	(0.485,0.523]	chr11	492701	593	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	359	2	7.24807	7.74218	8.23629	1.30353e-4	2.38146e-5	0.00633355	9.55691e-4
chr5	856674	856774	2607921	0	-	0.49	(0.485,0.523]	chr5	259417	57	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	0	389	2	6.80799	7.741515	8.67504	0.0023441	2.24655e-7	0.0305023	3.93841e-5
chr1	12583254	12583353	402435	0	-	0.484848	(0.45,0.485]	chr1	46222	22	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	349	2	7.39482	7.74147	8.08812	2.28027e-4	1.94284e-5	0.00851975	8.25524e-4
chr16	89435620	89435719	6661190	0	-	0.515152	(0.485,0.523]	chr16	666753	39	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	339	2	7.32492	7.74033	8.15574	8.51269e-4	1.27613e-6	0.0173632	1.23031e-4
chr12	19197624	19197724	5180866	0	+	0.5	(0.485,0.523]	chr12	504123	648	INTRON	INTRON	PLEKHA5	ENSG00000052126.15	ENST00000429027.7:ENST00000540972.5:ENST00000299275.10:ENST00000539256.5:ENST00000538714.5:ENST00000535357.5:ENST00000538034.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	332	2	7.49867	7.738645	7.97862	5.99913e-4	2.28725e-6	0.0143535	1.82747e-4
chr16	87738826	87738926	6656469	0	-	0.58	(0.523,0.58]	chr16	665892	78	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	865	2	6.25515	7.738315	9.22148	9.96394e-5	3.13235e-8	0.00559009	1.10286e-5
chr13	112972843	112972943	5655349	0	+	0.56	(0.523,0.58]	chr13	555120	30	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	379	2	7.0566700000000004	7.738305	8.41994	8.95674e-5	4.04959e-5	0.00524798	0.00140723
chrX	9688966	9689062	7844704	0	+	0.572917	(0.523,0.58]	chrX	822468	3	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000645686.1:ENST00000646640.1:ENST00000683056.1:ENST00000647060.1:ENST00000684110.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	332	2	7.66762	7.7382550000000005	7.80889	3.21619e-4	5.83386e-6	0.010233	3.51962e-4
chr1	12586336	12586436	402466	0	-	0.64	(0.58,1]	chr1	46222	53	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	356	2	7.1436	7.737845	8.3320900000000009	2.91156e-5	1.16294e-5	0.00303934	5.71933e-4
chr2	111421609	111421709	1252852	0	-	0.51	(0.485,0.523]	chr2	134896	433	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1	lncRNA	lncRNA	lncRNA	lncRNA	0	334	2	7.4195	7.73729	8.05508	7.03986e-4	1.77906e-6	0.0156243	1.53934e-4
chr5	1498583	1498682	2609725	0	-	0.393939	(0.39,0.419]	chr5	259859	33	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000514484.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	375	2	7.14362	7.736955	8.33029	2.09304e-4	6.51805e-5	0.00815515	0.00199309
chr1	1029826	1029926	1013	0	+	0.54	(0.523,0.58]	chr1	166	70	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	330	2	7.72086	7.7369	7.75294	3.85446e-4	4.42065e-6	0.0112847	2.8801e-4
chr6	144530651	144530751	3022362	0	+	0.41	(0.39,0.419]	chr6	295375	2	SS3_PROX	SS3_PROX:INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8	protein_coding	protein_coding	protein_coding	protein_coding	0	341	2	7.59653	7.73686	7.87719	5.03322e-4	1.72719e-5	0.0130134	7.58364e-4
chr1	17675584	17675683	54967	0	+	0.565657	(0.523,0.58]	chr1	5603	106	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	735	2	6.3589	7.73589	9.11288	2.02929e-5	1.6491e-6	0.00260584	1.46076e-4
chr2	239282976	239283076	1391538	0	-	0.39	(0.36,0.39]	chr2	148740	314	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	352	2	7.21431	7.7358150000000006	8.25732	0.00169475	2.28645e-6	0.0255129	1.82747e-4
chr22	50234623	50234723	7827207	0	-	0.62	(0.58,1]	chr22	821200	7	INTRON	INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	318	2	7.69838	7.73578	7.77318	1.3248e-4	1.26887e-6	0.00637826	1.22896e-4
chr17	81138598	81138698	6982888	0	-	0.51	(0.485,0.523]	chr17	713268	37	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	331	2	7.69299	7.73546	7.77793	3.38985e-4	5.79324e-6	0.0105406	3.51119e-4
chr13	113012465	113012565	5655748	0	+	0.61	(0.58,1]	chr13	555138	101	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	340	2	7.29604	7.734585	8.17313	4.27594e-5	6.86847e-6	0.00362006	3.9491e-4
chr10	132712352	132712452	4618591	0	+	0.54	(0.523,0.58]	chr10	441181	15	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000487614.1:ENST00000498337.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	329	2	7.679	7.73415	7.7893	4.19964e-4	3.92607e-6	0.011772	2.66734e-4
chr1	227767630	227767718	357649	0	+	0.454545	(0.45,0.485]	chr1	40319	2	UTR3	UTR3:EXON_MRNA:INTRON	SNAP47	ENSG00000143740.15	ENST00000681827.1:ENST00000679575.1:ENST00000680854.1:ENST00000681006.1:ENST00000366760.5:ENST00000681447.1:ENST00000680992.1:ENST00000680695.1:ENST00000366759.9:ENST00000315781.10:ENST00000681685.1:ENST00000681678.1:ENST00000681242.1:ENST00000681149.1:ENST00000418653.6:ENST00000617596.5:ENST00000681929.1:ENST00000478768.3:ENST00000426344.6:ENST00000680202.1:ENST00000679561.1:ENST00000681465.1:ENST00000491439.2:ENST00000681554.1:ENST00000681252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	334	2	7.47046	7.73336	7.99626	7.83923e-4	2.92984e-6	0.0166116	2.16859e-4
chr7	158915602	158915699	3523145	0	+	0.474227	(0.45,0.485]	chr7	340293	9	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	334	2	7.65058	7.73326	7.81594	3.94969e-4	8.76749e-6	0.0113656	4.67292e-4
chr20	62960103	62960203	7508298	0	+	0.58	(0.523,0.58]	chr20	783181	2	SS3_PROX	SS3_PROX:INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	733	2	6.3589	7.732735	9.10657	2.05714e-5	1.6491e-6	0.00263113	1.46076e-4
chr1	63656537	63656635	157504	0	+	0.418367	(0.39,0.419]	chr1	17959	6	INTRON	INTRON	PGM1	ENSG00000079739.17	ENST00000371084.8:ENST00000650546.1:ENST00000540265.5:ENST00000371083.4	protein_coding	protein_coding	protein_coding	protein_coding	0	345	2	7.4825	7.732559999999999	7.98262	4.11039e-4	2.42315e-5	0.0116246	9.65272e-4
chr2	38365073	38365173	1124217	0	-	0.39	(0.36,0.39]	chr2	123043	56	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000472097.1:ENST00000451483.1:ENST00000416222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	336	2	7.55269	7.731115	7.90954	9.00679e-4	6.6443e-6	0.0178629	3.85585e-4
chr17	61398636	61398736	6939786	0	-	0.58	(0.523,0.58]	chr17	707564	2	SS5_PROX	SS5_PROX:INTRON	TBX2-AS1	ENSG00000267280.6	ENST00000591313.6:ENST00000590421.1:ENST00000592009.1:ENST00000589814.5	lncRNA	lncRNA	lncRNA	lncRNA	0	329	2	7.52684	7.730595	7.93435	5.7255e-4	2.43952e-6	0.0140109	1.90739e-4
chr21	45474381	45474481	7631010	0	+	0.5	(0.485,0.523]	chr21	797673	4	SS5_PROX	SS5_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	1	951	2	6.90663	7.73021	8.55379	2.41668e-5	3.38071e-7	0.00283476	5.11972e-5
chr2	138555134	138555234	904425	0	+	0.42	(0.419,0.45]	chr2	101959	2	INTRON	INTRON	SPOPL	ENSG00000144228.9	ENST00000280098.9:ENST00000420679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	341	2	7.59792	7.729935	7.86195	6.42272e-4	2.06117e-5	0.0148938	8.58121e-4
chr16	57376577	57376676	6466030	0	+	0.494949	(0.485,0.523]	chr16	641365	36	INTRON	INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1	protein_coding	protein_coding	protein_coding	protein_coding	0	336	2	7.50952	7.729645	7.94977	2.37499e-4	1.04342e-5	0.0086821	5.30224e-4
chr16	1737732	1737830	6371316	0	+	0.591837	(0.58,1]	chr16	628851	23	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	325	2	7.2914	7.729464999999999	8.16753	3.40674e-4	3.02353e-7	0.010549	4.76798e-5
chr2	134419406	134419506	898438	0	+	0.42	(0.419,0.45]	chr2	101275	60	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	0	337	2	7.61473	7.7289200000000005	7.84311	0.00101372	9.99564e-6	0.0191342	5.13591e-4
chr17	72554431	72554531	6963855	0	-	0.55	(0.523,0.58]	chr17	710389	200	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	3	1186	2	6.45242	7.728805	9.00519	2.56074e-5	1.04271e-7	0.00289335	2.39234e-5
chr1	63604915	63605015	156974	0	+	0.42	(0.419,0.45]	chr1	17894	48	INTRON	INTRON	PGM1	ENSG00000079739.17	ENST00000371084.8:ENST00000650546.1:ENST00000540265.5	protein_coding	protein_coding	protein_coding	protein_coding	0	341	2	7.57799	7.727259999999999	7.87653	6.2509e-4	2.18502e-5	0.0146839	8.98326e-4
chr6	160068048	160068148	3066294	0	+	0.51	(0.485,0.523]	chr6	298069	4	SS3_PROX	SS3_PROX:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	331	2	7.61432	7.727185	7.84005	2.98185e-4	7.46252e-6	0.00982269	4.18185e-4
chr12	132779898	132779998	5540250	0	-	0.63	(0.58,1]	chr12	546769	17	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	318	2	7.6551	7.726850000000001	7.7986	1.0459e-4	1.93727e-6	0.00570277	1.62841e-4
chr11	70947108	70947208	5063762	0	-	0.48	(0.45,0.485]	chr11	492740	502	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000618363.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	340	2	7.46313	7.7262699999999995	7.98941	2.78531e-4	1.57306e-5	0.00949177	7.09232e-4
chr1	950150	950245	379862	0	-	0.536842	(0.523,0.58]	chr1	42700	12	INTRON	INTRON	NOC2L	ENSG00000188976.11	ENST00000327044.7:ENST00000477976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	327	2	7.60045	7.725625	7.8508	4.93015e-4	3.21028e-6	0.0128889	2.30506e-4
chr10	103836717	103836817	4758472	0	-	0.35	(0.33,0.36]	chr10	454819	350	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	0	347	2	7.36997	7.724740000000001	8.07951	2.47133e-4	2.70516e-5	0.00888713	0.00104594
chr13	112972445	112972545	5655345	0	+	0.51	(0.485,0.523]	chr13	555120	26	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	361	2	7.1677	7.724735	8.28177	1.18432e-4	3.05856e-5	0.00606082	0.00114404
chr19	15642709	15642809	7215380	0	+	0.45	(0.419,0.45]	chr19	737133	7	INTRON	INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	360	2	7.26544	7.72404	8.18264	3.52234e-4	5.39706e-5	0.0107244	0.00173477
chr11	20100536	20100636	4820035	0	+	0.47	(0.45,0.485]	chr11	461596	2	SS3_PROX	SS3_PROX:INTRON	NAV2	ENSG00000166833.23	ENST00000360655.8:ENST00000396085.6:ENST00000349880.9:ENST00000396087.7:ENST00000533917.5	protein_coding	protein_coding	protein_coding	protein_coding	0	338	2	7.4852	7.723554999999999	7.96191	2.9445e-4	1.469e-5	0.00975458	6.74072e-4
chr11	70764567	70764667	5061927	0	-	0.51	(0.485,0.523]	chr11	492701	467	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	330	2	7.61432	7.723375	7.83243	3.0292e-4	7.46252e-6	0.00988096	4.18185e-4
chr4	2813833	2813929	2000244	0	+	0.458333	(0.45,0.485]	chr4	203927	10	INTRON	INTRON	SH3BP2	ENSG00000087266.17	ENST00000503219.5:ENST00000512131.5:ENST00000503393.8:ENST00000510074.5:ENST00000511237.5:ENST00000504294.5:ENST00000508385.5:ENST00000513020.5:ENST00000511663.5:ENST00000512014.5:ENST00000513095.5:ENST00000502260.5:ENST00000435136.8:ENST00000511185.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	376	2	6.87488	7.72325	8.57162	0.00245783	4.53179e-7	0.0312836	6.22319e-5
chr19	5818291	5818390	7195569	0	+	0.484848	(0.45,0.485]	chr19	733105	125	INTRON	INTRON	NRTN	ENSG00000171119.3	ENST00000303212.3	protein_coding	protein_coding	protein_coding	protein_coding	0	330	2	7.71736	7.72312	7.72888	4.70072e-4	7.10655e-6	0.012528	4.04994e-4
chr1	43597049	43597148	107421	0	+	0.444444	(0.419,0.45]	chr1	13240	41	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	1	764	2	6.86159	7.723115	8.58464	1.63984e-4	8.75053e-7	0.00716963	9.63871e-5
chrX	47219702	47219800	7877800	0	+	0.612245	(0.58,1]	chrX	825683	2	INTRON	INTRON	CDK16	ENSG00000102225.17	ENST00000517997.5:ENST00000517479.1:ENST00000457458.6:ENST00000522883.1:ENST00000520295.5:ENST00000357227.9:ENST00000519758.5:ENST00000520893.5:ENST00000517426.5:ENST00000522234.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	322	2	7.51524	7.722440000000001	7.92964	7.6633e-5	3.18434e-6	0.00489022	2.29035e-4
chr16	85433817	85433917	6517409	0	+	0.44	(0.419,0.45]	chr16	646391	745	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	371	2	7.14867	7.72207	8.29547	2.84543e-4	7.52409e-5	0.00957277	0.00222212
chr6	81941730	81941830	3189374	0	-	0.48	(0.45,0.485]	chr6	309361	34	INTRON	INTRON	LINC02542	ENSG00000226453.3	ENST00000667666.1:ENST00000663543.1:ENST00000668303.1:ENST00000660637.1:ENST00000668266.1:ENST00000666226.1	lncRNA	lncRNA	lncRNA	lncRNA	0	334	2	7.37984	7.72183	8.06382	9.36002e-4	2.35915e-6	0.0183069	1.86715e-4
chr21	43975164	43975263	7625543	0	+	0.525253	(0.523,0.58]	chr21	796959	33	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000398063.6:ENST00000398058.5:ENST00000546158.1:ENST00000479117.5:ENST00000467358.5:ENST00000484865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	326	2	7.61828	7.72152	7.82476	4.75424e-4	3.49614e-6	0.0125953	2.45572e-4
chr15	28217095	28217194	6207142	0	-	0.484848	(0.45,0.485]	chr15	611111	9	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	1	722	2	6.77155	7.72143	8.67131	6.87601e-5	5.77607e-7	0.00463913	7.27846e-5
chr4	38677797	38677896	2030684	0	+	0.373737	(0.36,0.39]	chr4	207280	130	INTRON	INTRON	KLF3	ENSG00000109787.13	ENST00000514033.1:ENST00000261438.10:ENST00000482150.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	338	2	7.55668	7.72126	7.88584	4.76879e-4	1.92152e-5	0.0126263	8.19063e-4
chr18	13590337	13590437	7026496	0	+	0.54	(0.523,0.58]	chr18	717646	45	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000677744.1:ENST00000593236.1:ENST00000678400.1:ENST00000586207.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	356	2	7.19861	7.720115	8.24162	1.30529e-4	2.60365e-5	0.00633355	0.00101533
chr3	15442217	15442316	1417826	0	+	0.30303	(0.29,0.33]	chr3	152331	32	UTR3	UTR3:EXON_MRNA:INTRON	EAF1	ENSG00000144597.14	ENST00000396842.7:ENST00000617675.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	333	2	7.33185	7.719925	8.108	7.17042e-4	1.69692e-6	0.0158219	1.48742e-4
chr18	48603637	48603737	7057301	0	+	0.51	(0.485,0.523]	chr18	720287	629	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1	protein_coding	protein_coding	protein_coding	protein_coding	0	326	2	7.61871	7.71992	7.82113	4.69943e-4	3.82538e-6	0.012528	2.62442e-4
chr15	56984258	56984358	6110999	0	+	0.54	(0.523,0.58]	chr15	601587	628	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	854	2	6.23501	7.71988	9.20475	1.04019e-4	3.31856e-8	0.00569005	1.14443e-5
chr14	105215577	105215675	6058153	0	-	0.520408	(0.485,0.523]	chr14	594783	23	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000392557.8:ENST00000446501.6:ENST00000635152.1:ENST00000547374.5:ENST00000551787.5:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	326	2	7.58283	7.71929	7.85575	5.05626e-4	3.41783e-6	0.0130427	2.41689e-4
chr4	77819063	77819132	2256072	0	-	0.710145	(0.58,1]	chr4	227832	1	SS5_PROX	SS5_PROX:INTRON	CNOT6L	ENSG00000138767.14	ENST00000504123.7:ENST00000649644.1:ENST00000512485.6:ENST00000504804.7:ENST00000506166.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	332	2	7.33496	7.718975	8.10299	5.06194e-5	5.99783e-6	0.00393085	3.5765e-4
chr2	3294403	3294502	1081051	0	-	0.59596	(0.58,1]	chr2	117633	117	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	321	2	7.51524	7.718745	7.92225	7.79931e-5	3.18434e-6	0.00492356	2.29035e-4
chr13	33628069	33628169	5688854	0	-	0.37	(0.36,0.39]	chr13	558272	99	INTRON	INTRON	ENSG00000230490	ENSG00000230490.4	ENST00000686875.1:ENST00000454681.2:ENST00000655117.2:ENST00000690486.1:ENST00000654283.1	lncRNA	lncRNA	lncRNA	lncRNA	0	424	2	6.58738	7.718245	8.84911	0.00521906	3.59248e-7	0.0475638	5.33932e-5
chr10	132597022	132597122	4617431	0	+	0.5	(0.485,0.523]	chr10	441139	585	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	326	2	7.55531	7.71824	7.88117	5.34747e-4	3.14594e-6	0.0134768	2.2754e-4
chr9	135837962	135838061	4431126	0	-	0.494949	(0.485,0.523]	chr9	423507	100	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	332	2	7.33574	7.717410000000001	8.09908	8.33022e-4	1.53886e-6	0.0171427	1.3934e-4
chr7	75712668	75712768	3608230	0	-	0.38	(0.36,0.39]	chr7	348444	576	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6:ENST00000485723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	342	2	7.45035	7.717175	7.984	3.94528e-4	2.63375e-5	0.0113656	0.00102154
chrX	9568241	9568341	7843482	0	+	0.49	(0.485,0.523]	chrX	822423	73	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	329	2	7.59396	7.717005	7.84005	2.98185e-4	7.96614e-6	0.00982269	4.36503e-4
chr17	80634361	80634461	6809798	0	+	0.48	(0.45,0.485]	chr17	687816	82	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	354	2	7.05488	7.71683	8.37878	0.00175046	8.51401e-7	0.0259608	9.45696e-5
chr4	70719867	70719966	2054522	0	+	0.40404	(0.39,0.419]	chr4	209967	142	INTRON	INTRON	RUFY3	ENSG00000018189.13	ENST00000503876.5:ENST00000417478.6	protein_coding	protein_coding	protein_coding	protein_coding	0	337	2	7.37663	7.71528	8.05393	0.00129529	4.33552e-6	0.0219863	2.84538e-4
chr22	20123479	20123573	7686877	0	+	0.606383	(0.58,1]	chr22	804213	4	INTRON	INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000331821.7:ENST00000411892.5:ENST00000423859.5:ENST00000418705.2:ENST00000448394.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	653	2	6.6664	7.71452	8.76264	1.01627e-5	2.00827e-7	0.00187574	3.6561e-5
chr16	85523279	85523379	6518304	0	+	0.6	(0.58,1]	chr16	646391	1640	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	346	2	7.15814	7.713785	8.26943	3.38885e-5	1.10629e-5	0.00324013	5.52474e-4
chr16	85226702	85226802	6515335	0	+	0.61	(0.58,1]	chr16	646373	415	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	370	2	6.95657	7.713385000000001	8.4702	2.19702e-5	2.08088e-5	0.0026463	8.99734e-4
chr19	47228946	47229044	7392371	0	-	0.520408	(0.485,0.523]	chr19	768106	1	INTRON	INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	1	705	2	6.77978	7.712785	8.64579	5.46335e-5	4.27689e-7	0.00409627	5.98572e-5
chr22	46639256	46639356	7744570	0	+	0.55	(0.523,0.58]	chr22	812052	9	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	0	337	2	7.40014	7.712475	8.02481	2.05561e-4	1.37794e-5	0.00809983	6.44262e-4
chr13	111185913	111186007	5651307	0	+	0.468085	(0.45,0.485]	chr13	554738	3	INTRON	INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000449979.5:ENST00000491775.5:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8:ENST00000467053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	334	2	7.49611	7.711444999999999	7.92678	3.1608e-4	1.42008e-5	0.0101066	6.57379e-4
chr1	29237416	29237516	78382	0	+	0.66	(0.58,1]	chr1	8914	3	INTRON	INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2	protein_coding	protein_coding	protein_coding	protein_coding	0	318	2	7.33656	7.711385	8.08621	3.07185e-4	4.0741e-7	0.00996904	5.79223e-5
chr10	79220873	79220973	4533570	0	+	0.47	(0.45,0.485]	chr10	432457	42	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	881	2	6.48097	7.709735	8.9385	7.57732e-5	1.34964e-7	0.00485974	2.82276e-5
chr9	33859748	33859848	4140107	0	+	0.48	(0.45,0.485]	chr9	393785	288	INTRON	INTRON	UBE2R2	ENSG00000107341.5	ENST00000263228.4	protein_coding	protein_coding	protein_coding	protein_coding	0	333	2	7.50694	7.70971	7.91248	3.25318e-4	1.3731e-5	0.010266	6.43436e-4
chr16	83916484	83916583	6513089	0	+	0.535354	(0.523,0.58]	chr16	646141	11	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	341	2	7.13932	7.709295	8.27927	0.00124255	7.75553e-7	0.0214257	8.87873e-5
chr16	83916683	83916782	6513091	0	+	0.585859	(0.58,1]	chr16	646141	13	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	327	2	7.15939	7.708735	8.25808	4.60046e-4	2.16628e-7	0.0123493	3.85401e-5
chr2	233530209	233530308	1385567	0	-	0.333333	(0.33,0.36]	chr2	148131	3	INTRON	INTRON	USP40	ENSG00000085982.15	ENST00000450966.5:ENST00000251722.10:ENST00000678225.2:ENST00000427112.6:ENST00000485943.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	342	2	7.36997	7.70859	8.04721	2.63741e-4	2.70516e-5	0.00919874	0.00104594
chr8	128041658	128041757	3920298	0	+	0.434343	(0.419,0.45]	chr8	374321	14	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	2	1050	2	6.63743	7.70851	8.77959	1.12754e-4	4.03733e-7	0.00593376	5.75598e-5
chr2	210454207	210454306	1366682	0	-	0.393939	(0.39,0.419]	chr2	145454	124	INTRON	INTRON	LANCL1	ENSG00000115365.12	ENST00000441020.7:ENST00000443314.5:ENST00000450366.7:ENST00000233714.8:ENST00000431941.6:ENST00000448951.5	protein_coding	protein_coding	protein_coding	protein_coding	0	334	2	7.40726	7.70848	8.0097	0.00122356	4.96299e-6	0.021209	3.14509e-4
chr1	36249703	36249803	92035	0	+	0.53	(0.523,0.58]	chr1	10759	239	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	0	323	2	7.59145	7.708105	7.82476	5.0213e-4	3.49614e-6	0.0129939	2.45572e-4
chr10	132594424	132594524	4617405	0	+	0.55	(0.523,0.58]	chr10	441139	559	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	323	2	7.59145	7.708105	7.82476	5.0213e-4	3.49614e-6	0.0129939	2.45572e-4
chr16	29273512	29273612	6433572	0	+	0.35	(0.33,0.36]	chr16	636745	214	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	330	2	7.61776	7.70801	7.79826	4.33897e-4	1.27774e-5	0.0119405	6.12982e-4
chr1	31578903	31579003	81034	0	+	0.39	(0.36,0.39]	chr1	9281	3	SS3_PROX	SS3_PROX:INTRON	LINC01226:TINAGL1	ENSG00000284543.1:ENSG00000142910.16	ENST00000639839.1:ENST00000640226.1:ENST00000457433.6:ENST00000271064.12:ENST00000461030.5:ENST00000478398.5:ENST00000481165.5:ENST00000537531.2:ENST00000468635.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	453	2	6.58457	7.70777	8.83097	3.09569e-4	7.4401e-5	0.00622124	0.00482028
chrX	123864522	123864621	7946325	0	+	0.636364	(0.58,1]	chrX	831426	36	INTRON	INTRON	XIAP	ENSG00000101966.13	ENST00000422098.5:ENST00000481776.5:ENST00000434753.7:ENST00000497906.5:ENST00000468691.5:ENST00000430625.1:ENST00000371199.8:ENST00000497640.1:ENST00000355640.3:ENST00000468503.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	325	2	7.38528	7.707275	8.02927	6.04079e-5	5.03066e-6	0.0043082	3.16553e-4
chr9	135837762	135837862	4431124	0	-	0.5	(0.485,0.523]	chr9	423507	98	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	334	2	7.2353	7.705864999999999	8.17643	0.00101791	1.19167e-6	0.0191524	1.17e-4
chr9	111470700	111470800	4369033	0	-	0.6	(0.58,1]	chr9	417454	188	INTRON	INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5:ENST00000602978.1	protein_coding	protein_coding	protein_coding	protein_coding	0	313	2	7.64481	7.705385	7.76596	1.12977e-4	2.00974e-6	0.00593499	1.67176e-4
chr2	222914222	222914322	1038243	0	+	0.51	(0.485,0.523]	chr2	113229	26	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000542810.1:ENST00000540115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	1966	2	7.52177	7.7052	7.88863	2.80414e-6	3.38476e-8	0.00112513	1.16001e-5
chr5	1465961	1466056	2609383	0	-	0.631579	(0.58,1]	chr5	259790	18	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000503252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	393	2	6.77976	7.70406	8.62836	3.96539e-5	1.41347e-5	0.00218388	0.00138542
chr1	119726251	119726350	224067	0	+	0.50505	(0.485,0.523]	chr1	24645	9	INTRON	INTRON	PHGDH	ENSG00000092621.13	ENST00000641597.1:ENST00000493622.5:ENST00000641213.1:ENST00000641947.1:ENST00000642041.1:ENST00000641074.1:ENST00000641115.1:ENST00000642021.1:ENST00000641491.1:ENST00000641023.2:ENST00000369409.9:ENST00000641573.1:ENST00000641513.1:ENST00000641375.1:ENST00000641891.1:ENST00000641570.1:ENST00000641587.1:ENST00000641371.1:ENST00000462324.2:ENST00000641272.1:ENST00000641247.1:ENST00000641756.1:ENST00000641711.1:ENST00000641927.1:ENST00000641314.1:ENST00000369407.3:ENST00000641811.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	338	2	7.16424	7.70378	8.24332	0.0011719	9.54563e-7	0.0206836	1.01723e-4
chr9	135837562	135837662	4431122	0	-	0.49	(0.485,0.523]	chr9	423507	96	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	337	2	7.17633	7.703255	8.23018	0.00114421	9.97111e-7	0.0204418	1.04991e-4
chr14	19303423	19303521	5928396	0	-	0.510204	(0.485,0.523]	chr14	580401	49	EXON_LNCRNA	EXON_LNCRNA:INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	328	2	7.52035	7.70265	7.88495	2.71717e-4	1.00801e-5	0.00935325	5.15349e-4
chr6	41058420	41058519	3130845	0	-	0.393939	(0.39,0.419]	chr6	305368	57	INTRON	INTRON	OARD1	ENSG00000124596.17	ENST00000482853.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	351	2	7.26145	7.702145	8.14284	3.01549e-4	4.63445e-5	0.00987906	0.00155699
chr10	34573750	34573850	4669391	0	-	0.46	(0.45,0.485]	chr10	445529	562	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	325	2	7.68912	7.700794999999999	7.71247	4.85705e-4	7.76752e-6	0.012769	4.3011e-4
chr1	1053267	1053363	1297	0	+	0.604167	(0.58,1]	chr1	283	14	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	320	2	7.4339	7.699955	7.96601	7.02669e-5	4.24175e-6	0.00470281	2.81464e-4
chr15	22558090	22558190	6059855	0	+	0.55	(0.523,0.58]	chr15	594971	6	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	321	2	7.53625	7.697815	7.85938	5.6173e-4	3.12125e-6	0.0138488	2.26144e-4
chr7	98881649	98881729	3425124	0	+	0.3875	(0.36,0.39]	chr7	330663	1	EXON_SMALL	EXON_SMALL:SSB_PROX:SS3_PROX:SS5_PROX:PRIMIRNA:INTRON	TRRAP:MIR3609	ENSG00000196367.14:ENSG00000266019.1	ENST00000417523.5:ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7:ENST00000582661.1	miRNA	miRNA	miRNA:protein_coding	miRNA:protein_coding:primary_miRNA	6	4313	2	6.63664	7.69729	8.75794	1.26927e-5	1.59271e-9	0.0020724	1.80736e-6
chr1	1031120	1031219	1026	0	+	0.515152	(0.485,0.523]	chr1	166	83	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	321	2	7.55531	7.696925	7.83854	5.34747e-4	3.61475e-6	0.0134768	2.52006e-4
chr2	26092163	26092263	731401	0	+	0.35	(0.33,0.36]	chr2	85215	495	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	325	2	7.60765	7.696705	7.78576	6.3237e-4	7.6296e-6	0.0147771	4.24523e-4
chr1	245798341	245798441	698755	0	-	0.51	(0.485,0.523]	chr1	82352	95	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000490322.1:ENST00000493441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	354	2	7.13988	7.696695	8.25351	1.25706e-4	3.33392e-5	0.00621888	0.0012196
chr9	727662	727761	4104698	0	+	0.383838	(0.36,0.39]	chr9	390844	136	INTRON	INTRON	KANK1	ENSG00000107104.21	ENST00000382303.5:ENST00000691319.1:ENST00000382297.7:ENST00000674102.1:ENST00000689926.1:ENST00000489369.5:ENST00000619269.5:ENST00000689779.1:ENST00000692130.1:ENST00000354485.5:ENST00000685947.1:ENST00000382289.7:ENST00000690372.1:ENST00000693656.1:ENST00000687796.1:ENST00000685481.1:ENST00000382286.3:ENST00000692757.1:ENST00000690348.1:ENST00000688039.1:ENST00000692345.1:ENST00000685380.1:ENST00000689214.1:ENST00000691645.1:ENST00000693143.1:ENST00000685590.1:ENST00000693021.1:ENST00000687662.1:ENST00000693088.1:ENST00000688567.1:ENST00000686846.1:ENST00000382293.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	336	2	7.45035	7.69655	7.94275	4.27295e-4	2.63375e-5	0.0118572	0.00102154
chr9	121197973	121198072	4389732	0	-	0.373737	(0.36,0.39]	chr9	419042	42	INTRON	INTRON	RAB14	ENSG00000119396.11	ENST00000373840.9:ENST00000451303.1	protein_coding	protein_coding	protein_coding	protein_coding	0	336	2	7.45035	7.69655	7.94275	4.27295e-4	2.63375e-5	0.0118572	0.00102154
chr16	83916583	83916683	6513090	0	+	0.58	(0.523,0.58]	chr16	646141	12	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	337	2	7.13932	7.696395	8.25347	0.00124255	8.45494e-7	0.0214257	9.40599e-5
chr13	112972744	112972843	5655348	0	+	0.555556	(0.523,0.58]	chr13	555120	29	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	343	2	7.25169	7.69603	8.14037	1.61454e-4	2.20409e-5	0.00712539	9.00215e-4
chr1	1341566	1341666	381192	0	-	0.51	(0.485,0.523]	chr1	43164	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DVL1	ENSG00000107404.21	ENST00000378891.9:ENST00000378888.10	protein_coding	protein_coding	protein_coding	protein_coding	0	326	2	7.33574	7.695410000000001	8.05508	8.33022e-4	1.77906e-6	0.0171427	1.53934e-4
chr13	112873341	112873431	5654406	0	+	0.566667	(0.523,0.58]	chr13	555053	4	SS3_PROX	SS3_PROX:INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000471555.5:ENST00000415301.2:ENST00000419631.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	327	2	7.3026	7.6954	8.0882	8.98889e-4	1.4667e-6	0.0178386	1.35048e-4
chr16	29270713	29270813	6433544	0	+	0.54	(0.523,0.58]	chr16	636745	186	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	368	2	7.01122	7.694955	8.37869	9.77425e-5	4.65929e-5	0.0055289	0.00156314
chr17	17736053	17736153	6689396	0	+	0.53	(0.523,0.58]	chr17	671344	115	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	320	2	7.61828	7.694755000000001	7.77123	4.75424e-4	4.16461e-6	0.0125953	2.78321e-4
chr5	1328697	1328795	2609102	0	-	0.5	(0.485,0.523]	chr5	259719	24	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	323	2	7.40929	7.693955000000001	7.97862	7.18613e-4	2.28725e-6	0.0158219	1.82747e-4
chr22	25456858	25456958	7701109	0	+	0.57	(0.523,0.58]	chr22	805960	2	SS3_PROX	SS3_PROX:INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000382734.10:ENST00000686640.1:ENST00000509460.3:ENST00000415709.6:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	326	2	7.50224	7.693375	7.88451	2.75108e-4	9.94429e-6	0.00943643	5.11988e-4
chr12	122093162	122093262	5343520	0	+	0.51	(0.485,0.523]	chr12	521864	135	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	326	2	7.49861	7.69178	7.88495	2.71717e-4	1.08033e-5	0.00935325	5.4404e-4
chr6	48067455	48067555	3146623	0	-	0.38	(0.36,0.39]	chr6	306784	580	INTRON	INTRON	PTCHD4	ENSG00000244694.8	ENST00000339488.9:ENST00000398738.3:ENST00000679966.1	protein_coding	protein_coding	protein_coding	protein_coding	1	753	2	6.99384	7.6914750000000005	8.38911	1.78811e-4	4.7098e-7	0.00752612	6.38118e-5
chr4	128859529	128859627	2132083	0	+	0.428571	(0.419,0.45]	chr4	216567	17	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	0	332	2	7.38921	7.69143	7.99365	0.00152802	6.37722e-6	0.0240842	3.74355e-4
chr14	70023747	70023847	5872620	0	+	0.44	(0.419,0.45]	chr14	573362	3	SS5_PROX	SS5_PROX:INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	1	1004	2	6.83575	7.689724999999999	8.5437	6.60549e-5	1.20115e-6	0.00451657	1.17557e-4
chr7	2042117	2042217	3530653	0	-	0.51	(0.485,0.523]	chr7	340995	271	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	322	2	7.39901	7.688815	7.97862	7.33641e-4	2.28725e-6	0.0159757	1.82747e-4
chr11	112254279	112254379	4942407	0	+	0.49	(0.485,0.523]	chr11	476600	164	INTRON	INTRON	PTS	ENSG00000150787.8	ENST00000531673.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	331	2	7.38471	7.68807	7.99143	2.17771e-4	1.55038e-5	0.00834646	7.00888e-4
chr2	3269476	3269575	1080800	0	-	0.484848	(0.45,0.485]	chr2	117623	70	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	349	2	7.00185	7.687365	8.37288	0.00193567	8.67942e-7	0.0275437	9.58996e-5
chr2	10368377	10368477	719083	0	+	0.6	(0.58,1]	chr2	84032	136	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	786	2	6.66632	7.68665	8.70698	1.32213e-5	4.07135e-8	0.00211359	1.3099e-5
chr16	83916981	83917081	6513094	0	+	0.59	(0.58,1]	chr16	646141	16	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	327	2	7.06863	7.686605	8.30458	5.64522e-4	1.82441e-7	0.0138715	3.43389e-5
chr3	13373873	13373973	1692587	0	-	0.6	(0.58,1]	chr3	176728	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000420141.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	307	2	7.61836	7.68626	7.75416	1.59836e-4	1.35867e-6	0.00707846	1.28554e-4
chrX	315699	315799	7964852	0	-	0.47	(0.45,0.485]	chrX	834135	4	SS3_PROX	SS3_PROX:INTRON	GTPBP6	ENSG00000178605.13	ENST00000326153.9	protein_coding	protein_coding	protein_coding	protein_coding	0	324	2	7.39019	7.685499999999999	7.98081	9.17281e-4	3.07835e-6	0.0180726	2.23711e-4
chr2	3221539	3221639	1080316	0	-	0.52	(0.485,0.523]	chr2	117609	69	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000482570.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	713	2	7.03333	7.6850000000000005	8.33667	1.05459e-4	1.80752e-7	0.00573959	3.42091e-5
chr7	47478404	47478504	3588592	0	-	0.37	(0.36,0.39]	chr7	346123	253	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	334	2	7.41686	7.68328	7.9497	4.21588e-4	2.90729e-5	0.011772	0.00110268
chr9	135837263	135837363	4431119	0	-	0.46	(0.45,0.485]	chr9	423507	93	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	330	2	7.238	7.683175	8.12835	0.00123254	1.91683e-6	0.021319	1.61771e-4
chr2	61883748	61883848	1158559	0	-	0.36	(0.33,0.36]	chr2	127035	2	SS3_PROX	SS3_PROX:INTRON	CCT4	ENSG00000115484.15	ENST00000394440.8:ENST00000544079.2	protein_coding	protein_coding	protein_coding	protein_coding	0	322	2	7.56265	7.682964999999999	7.80328	6.90738e-4	7.22811e-6	0.0154874	4.09007e-4
chr7	1023603	1023703	3526459	0	-	0.59	(0.58,1]	chr7	340572	131	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	313	2	7.48094	7.682840000000001	7.88474	8.52724e-5	3.59436e-6	0.00513292	2.5106e-4
chr12	23951032	23951131	5388541	0	-	0.494949	(0.485,0.523]	chr12	528209	1	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000646273.1:ENST00000659413.1:ENST00000536729.2:ENST00000446891.7	protein_coding	protein_coding	protein_coding	protein_coding	0	341	2	7.03741	7.681645	8.32588	0.0015038	7.25243e-7	0.0239138	8.48201e-5
chr16	29272912	29273012	6433566	0	+	0.53	(0.523,0.58]	chr16	636745	208	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	329	2	7.37643	7.68028	7.98413	2.2373e-4	1.48581e-5	0.00845454	6.80263e-4
chr20	49698582	49698681	7576022	0	-	0.494949	(0.485,0.523]	chr20	791530	415	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	0	317	2	7.58283	7.6797450000000005	7.77666	5.05626e-4	4.41961e-6	0.0130427	2.8801e-4
chr17	7113716	7113816	6847771	0	-	0.46	(0.45,0.485]	chr17	693424	2	SS5_PROX	SS5_PROX:INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	2981	2	7.33983	7.67867	8.01751	2.90281e-6	7.70288e-9	0.00112513	4.43037e-6
chr6	169621751	169621851	3304074	0	-	0.39	(0.36,0.39]	chr6	319826	77	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	332	2	7.25981	7.67861	8.09741	0.00155805	3.74236e-6	0.0243306	2.5891e-4
chr16	78634846	78634946	6500762	0	+	0.52	(0.485,0.523]	chr16	645695	601	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000684632.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6:ENST00000408984.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	331	2	7.15204	7.6777999999999995	8.20356	0.00120048	1.08921e-6	0.0210159	1.10265e-4
chr17	77484926	77485026	6805231	0	+	0.54	(0.523,0.58]	chr17	686821	9	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	929	2	5.98916	7.677585	9.36601	1.17192e-5	1.16999e-6	0.0019976	1.15653e-4
chr9	136007531	136007631	4432147	0	-	0.58	(0.523,0.58]	chr9	423617	11	UTR3	UTR3:EXON_MRNA	NACC2	ENSG00000148411.8	ENST00000277554.4:ENST00000371753.5	protein_coding	protein_coding	protein_coding	protein_coding	0	320	2	7.35671	7.677289999999999	7.99787	8.06717e-4	1.97827e-6	0.0168786	1.65213e-4
chr16	89429456	89429556	6661128	0	-	0.55	(0.523,0.58]	chr16	666747	107	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	865	2	5.77282	7.677239999999999	9.58166	2.7683e-4	8.98859e-9	0.00946638	4.91246e-6
chr10	35416142	35416241	4476471	0	+	0.515152	(0.485,0.523]	chr10	428113	209	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	333	2	7.29927	7.6754999999999995	8.05173	1.92016e-4	2.02879e-5	0.00780212	8.47843e-4
chr16	85590628	85590728	6518979	0	+	0.53	(0.523,0.58]	chr16	646396	339	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	1	687	2	6.50688	7.675470000000001	8.84406	3.62259e-5	1.00263e-6	0.0033207	1.05275e-4
chr8	124672796	124672896	4064385	0	-	0.44	(0.419,0.45]	chr8	387129	2	SS5_PROX	SS5_PROX:INTRON	MTSS1	ENSG00000170873.19	ENST00000518547.6:ENST00000378017.7:ENST00000325064.9:ENST00000522162.1:ENST00000529463.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	334	2	7.40775	7.674075	7.9404	5.54971e-4	3.58484e-5	0.0137234	0.00128261
chr6	98920804	98920904	3207943	0	-	0.47	(0.45,0.485]	chr6	311438	27	INTRON	INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	0	325	2	7.46313	7.6732949999999995	7.88346	3.44891e-4	1.57306e-5	0.0106242	7.09232e-4
chr16	81614813	81614913	6509444	0	+	0.44	(0.419,0.45]	chr16	645921	39	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	324	2	7.58839	7.672735	7.75708	0.00106381	1.29008e-5	0.0196024	6.14919e-4
chrX	9569340	9569440	7843493	0	+	0.52	(0.485,0.523]	chrX	822423	84	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	688	2	6.49089	7.67147	8.85205	3.50978e-5	1.13119e-6	0.00328321	1.12814e-4
chr2	47336119	47336219	1141967	0	-	0.46	(0.45,0.485]	chr2	124898	27	INTRON	INTRON	EPCAM-DT	ENSG00000234690.7	ENST00000448713.5:ENST00000441997.5:ENST00000419035.1:ENST00000450550.5:ENST00000413185.2	lncRNA	lncRNA	lncRNA	lncRNA	0	326	2	7.42938	7.67093	7.91248	3.25318e-4	1.74625e-5	0.010266	7.63142e-4
chr3	136299746	136299844	1574576	0	+	0.336735	(0.33,0.36]	chr3	167002	13	INTRON	INTRON	PCCB	ENSG00000114054.14	ENST00000251654.9:ENST00000490504.5:ENST00000483687.5:ENST00000468777.5:ENST00000462637.5:ENST00000466072.5:ENST00000484181.5:ENST00000482086.5:ENST00000471595.5:ENST00000469217.5:ENST00000478469.5:ENST00000474833.5:ENST00000475214.5:ENST00000473073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	324	2	7.33543	7.670695	8.00596	0.00107451	3.85181e-6	0.0197424	2.64147e-4
chr10	79114518	79114618	4532500	0	+	0.55	(0.523,0.58]	chr10	432420	449	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	324	2	7.41185	7.66995	7.92805	2.51374e-4	1.32752e-5	0.0089838	6.28604e-4
chr22	36329746	36329845	7806816	0	-	0.555556	(0.523,0.58]	chr22	818135	9	INTRON	INTRON	MYH9	ENSG00000100345.23	ENST00000216181.11:ENST00000685801.1:ENST00000692930.1:ENST00000685187.1:ENST00000691687.1:ENST00000685191.1:ENST00000688137.1:ENST00000401701.1:ENST00000691296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	314	2	7.54559	7.667445	7.7893	5.51177e-4	3.92607e-6	0.0136794	2.66734e-4
chr13	33214599	33214699	5684743	0	-	0.35	(0.33,0.36]	chr13	558196	87	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	322	2	7.36718	7.66741	7.96764	0.0010106	4.34089e-6	0.0191342	2.84779e-4
chr7	583318	583417	3523919	0	-	0.606061	(0.58,1]	chr7	340376	36	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000400758.6:ENST00000430040.5	protein_coding	protein_coding	protein_coding	protein_coding	0	304	2	7.64481	7.667255	7.6897	1.35209e-4	2.00974e-6	0.00645702	1.67176e-4
chr12	122094662	122094762	5343535	0	+	0.5	(0.485,0.523]	chr12	521864	150	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	325	2	7.38471	7.66724	7.94977	2.37499e-4	1.55038e-5	0.0086821	7.00888e-4
chr20	64021077	64021175	7510612	0	+	0.408163	(0.39,0.419]	chr20	783726	39	INTRON	INTRON	PRPF6	ENSG00000101161.8	ENST00000266079.5	protein_coding	protein_coding	protein_coding	protein_coding	0	323	2	7.41732	7.667145	7.91697	0.00120083	6.58275e-6	0.0210159	3.83338e-4
chr18	77118527	77118626	7181506	0	-	0.575758	(0.523,0.58]	chr18	730186	129	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1:ENST00000583798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	354	2	7.04168	7.66708	8.29248	1.17267e-4	4.24161e-5	0.00604041	0.00145737
chr2	11516298	11516398	720024	0	+	0.52	(0.485,0.523]	chr2	84084	336	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000628795.2	protein_coding	protein_coding	protein_coding	protein_coding	0	323	2	7.41983	7.666975	7.91412	2.55762e-4	1.3874e-5	0.00905867	6.45948e-4
chr19	8248333	8248432	7200367	0	+	0.464646	(0.45,0.485]	chr19	734198	65	INTRON	INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	321	2	7.51769	7.666815	7.81594	3.94969e-4	1.32798e-5	0.0113656	6.28604e-4
chr22	19909586	19909685	7765140	0	-	0.50505	(0.485,0.523]	chr22	813988	102	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	314	2	7.58283	7.66607	7.74931	5.05626e-4	4.82922e-6	0.0130427	3.08032e-4
chr18	80185540	80185640	7183135	0	-	0.53	(0.523,0.58]	chr18	730364	20	INTRON	INTRON	PARD6G	ENSG00000178184.16	ENST00000353265.8:ENST00000470488.2:ENST00000463384.1	protein_coding	protein_coding	protein_coding	protein_coding	0	315	2	7.61794	7.665265	7.71259	3.92044e-4	6.85165e-6	0.0113511	3.9491e-4
chr17	7174960	7175057	6847820	0	-	0.453608	(0.45,0.485]	chr17	693457	1	INTRON	INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	3	2512	2	6.97058	7.664505	8.35843	1.02586e-5	2.78415e-9	0.00188327	2.4481e-6
chr16	29271313	29271413	6433550	0	+	0.42	(0.419,0.45]	chr16	636745	192	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	329	2	7.45223	7.6643799999999995	7.87653	6.2509e-4	3.15167e-5	0.0146839	0.00116717
chr17	56892429	56892529	6931122	0	-	0.39	(0.36,0.39]	chr17	706270	2	SS3_PROX	SS3_PROX:INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000574234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	334	2	7.15534	7.664125	8.17291	0.00188906	2.96696e-6	0.0271118	2.18261e-4
chr21	46403773	46403872	7633017	0	+	0.606061	(0.58,1]	chr21	798231	9	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5	protein_coding	protein_coding	protein_coding	protein_coding	0	312	2	7.19661	7.66387	8.13113	4.22825e-4	3.45578e-7	0.011772	5.18663e-5
chr5	31436738	31436838	2629165	0	-	0.4	(0.39,0.419]	chr5	260851	1	SS5_PROX	SS5_PROX:INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000504133.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	320	2	7.60514	7.662875	7.72061	8.44342e-4	1.19145e-5	0.017268	5.82703e-4
chr1	42850000	42850079	105838	0	+	0.405063	(0.39,0.419]	chr1	12814	3	SS5_PROX	SS5_PROX:INTRON	ZNF691	ENSG00000164011.18	ENST00000372502.5:ENST00000372508.7:ENST00000651192.1:ENST00000372507.5:ENST00000372506.5:ENST00000372504.5:ENST00000397034.3:ENST00000372503.2	protein_coding	protein_coding	protein_coding	protein_coding	0	321	2	7.62612	7.6625049999999995	7.69889	7.07115e-4	1.58122e-5	0.0156772	7.12006e-4
chr4	3368781	3368880	2005124	0	+	0.555556	(0.523,0.58]	chr4	204663	254	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	314	2	7.43927	7.6620349999999995	7.8848	6.83398e-4	2.87132e-6	0.0153809	2.13469e-4
chr14	105215382	105215479	6058151	0	-	0.463918	(0.45,0.485]	chr14	594783	21	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000392557.8:ENST00000446501.6:ENST00000635152.1:ENST00000547374.5:ENST00000551787.5:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	316	2	7.48984	7.661795	7.83375	7.54635e-4	4.9183e-6	0.0162304	3.11937e-4
chr4	2068493	2068592	1997261	0	+	0.474747	(0.45,0.485]	chr4	203663	45	UTR3	UTR3:EXON_MRNA	NAT8L	ENSG00000185818.8	ENST00000423729.3	protein_coding	protein_coding	protein_coding	protein_coding	0	396	2	6.56336	7.66164	8.75992	0.00436001	2.43803e-7	0.0427656	4.12107e-5
chr2	232900465	232900564	1383843	0	-	0.434343	(0.419,0.45]	chr2	147952	52	INTRON	INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000416114.3:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	331	2	7.22796	7.661635	8.09531	0.00204103	4.6985e-6	0.0283511	3.01296e-4
chr17	80634461	80634560	6809799	0	+	0.50505	(0.485,0.523]	chr17	687816	83	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	324	2	7.18832	7.661535000000001	8.13475	0.00111738	1.36784e-6	0.0202011	1.28697e-4
chr8	128040383	128040481	3920285	0	+	0.5	(0.485,0.523]	chr8	374321	1	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	0	346	2	6.91288	7.661340000000001	8.4098	0.00191584	5.47981e-7	0.0274102	7.03603e-5
chr22	29966678	29966778	7710195	0	+	0.49	(0.485,0.523]	chr22	806661	92	INTRON	INTRON	MTMR3	ENSG00000100330.16	ENST00000333027.7:ENST00000401950.7:ENST00000495098.5:ENST00000445401.5:ENST00000323630.9:ENST00000351488.7:ENST00000415511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	324	2	7.37281	7.66129	7.94977	2.37499e-4	1.60973e-5	0.0086821	7.19583e-4
chr16	85451710	85451809	6517588	0	+	0.656566	(0.58,1]	chr16	646391	924	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	348	2	6.97312	7.660915	8.34871	2.79643e-5	2.07776e-5	0.00298241	8.62032e-4
chr12	122093962	122094062	5343528	0	+	0.54	(0.523,0.58]	chr12	521864	143	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	329	2	7.29026	7.66087	8.03148	2.02723e-4	1.95191e-5	0.00805364	8.25524e-4
chr17	77215965	77216062	6803134	0	+	0.515464	(0.485,0.523]	chr17	686684	21	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	2	922	2	5.95803	7.6595949999999995	9.36116	1.16548e-5	1.38824e-6	0.00199424	1.30178e-4
chr2	165937769	165937867	1301061	0	-	0.377551	(0.36,0.39]	chr2	139566	2	INTRON	INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000679840.1:ENST00000680448.1:ENST00000681606.1:ENST00000679671.1:ENST00000464374.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	869	2	6.31438	7.65905	9.00372	1.44356e-4	2.20211e-7	0.00670587	3.8971e-5
chr6	10588813	10588913	2850435	0	+	0.47	(0.45,0.485]	chr6	278695	15	INTRON	INTRON	GCNT2	ENSG00000111846.20	ENST00000410107.5:ENST00000489225.5:ENST00000397423.7:ENST00000495262.7:ENST00000475577.5:ENST00000489819.5:ENST00000474518.1:ENST00000379597.7:ENST00000485764.1:ENST00000461400.1:ENST00000316170.9:ENST00000459872.1:ENST00000265012.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	317	2	7.58055	7.65878	7.73701	4.62504e-4	1.09169e-5	0.0123892	5.4861e-4
chr14	104777243	104777338	6057661	0	-	0.694737	(0.58,1]	chr14	594698	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000557552.1:ENST00000683722.1:ENST00000555528.5:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000544168.5:ENST00000554848.5:ENST00000682269.1:ENST00000555380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	306	2	7.49246	7.657535	7.82261	9.88138e-5	3.45114e-6	0.00555761	2.43327e-4
chr4	106109015	106109115	2301342	0	-	0.47	(0.45,0.485]	chr4	231434	130	INTRON	INTRON	TBCK	ENSG00000145348.17	ENST00000273980.10:ENST00000394708.7:ENST00000510927.5:ENST00000361687.8:ENST00000394706.7:ENST00000467183.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	324	2	7.21489	7.65746	8.10003	0.00128871	2.0999e-6	0.0219081	1.72118e-4
chr10	59874069	59874169	4694514	0	-	0.45	(0.419,0.45]	chr10	447429	210	INTRON	INTRON	CCDC6	ENSG00000108091.11	ENST00000263102.7	protein_coding	protein_coding	protein_coding	protein_coding	0	327	2	7.45223	7.65709	7.86195	6.42272e-4	3.15167e-5	0.0148938	0.00116717
chr3	13200126	13200226	1691143	0	-	0.42	(0.419,0.45]	chr3	176566	356	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	323	2	7.38921	7.656750000000001	7.92429	0.00152802	7.84779e-6	0.0240842	4.32984e-4
chr20	44360640	44360740	7482514	0	+	0.4	(0.39,0.419]	chr20	779618	44	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5	protein_coding	protein_coding	protein_coding	protein_coding	0	319	2	7.65512	7.6560749999999995	7.65703	7.65486e-4	1.44991e-5	0.0163688	6.65866e-4
chr2	239372400	239372500	1392436	0	-	0.64	(0.58,1]	chr2	148759	191	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	303	2	7.36952	7.65595	7.94238	2.84773e-4	6.88332e-7	0.00957277	8.19296e-5
chr17	64106729	64106829	6946044	0	-	0.48	(0.45,0.485]	chr17	708627	81	INTRON	INTRON	ERN1	ENSG00000178607.17	ENST00000680433.1:ENST00000433197.4:ENST00000584041.1:ENST00000680493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	315	2	7.63091	7.65499	7.67907	5.19089e-4	9.3252e-6	0.0132519	4.88957e-4
chr5	1055081	1055181	2608371	0	-	0.51	(0.485,0.523]	chr5	259538	12	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10:ENST00000634447.1	protein_coding	protein_coding	protein_coding	protein_coding	0	322	2	7.37281	7.654215000000001	7.93562	2.44592e-4	1.60973e-5	0.00884339	7.19583e-4
chr5	73783337	73783437	2453267	0	+	0.49	(0.485,0.523]	chr5	244950	22	INTRON	INTRON	ARHGEF28	ENSG00000214944.10	ENST00000545377.5:ENST00000296794.10:ENST00000513042.7:ENST00000426542.6:ENST00000437974.5	protein_coding	protein_coding	protein_coding	protein_coding	0	316	2	7.48762	7.652345	7.81707	3.12689e-4	1.11881e-5	0.0100453	5.5674e-4
chr22	50234822	50234922	7827209	0	-	0.62	(0.58,1]	chr22	821200	9	INTRON	INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	301	2	7.6029	7.65064	7.69838	1.3248e-4	2.33339e-6	0.00637826	1.85287e-4
chr3	17738342	17738442	1704768	0	-	0.38	(0.36,0.39]	chr3	177822	361	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000446863.5:ENST00000444471.5:ENST00000481396.5:ENST00000423331.6:ENST00000485432.1:ENST00000471679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	317	2	7.56181	7.6505849999999995	7.73936	8.85298e-4	1.11199e-5	0.0177354	5.54827e-4
chr8	13126343	13126443	3939770	0	-	0.41	(0.39,0.419]	chr8	376710	102	INTRON	INTRON	DLC1	ENSG00000164741.15	ENST00000276297.9:ENST00000358919.6:ENST00000512044.6:ENST00000509922.5:ENST00000503161.6:ENST00000515225.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	323	2	7.46077	7.650515	7.84026	5.40187e-4	2.58392e-5	0.0135788	0.0010125
chr6	1798261	1798361	3080855	0	-	0.36	(0.33,0.36]	chr6	299482	553	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	315	2	7.63398	7.6502	7.66642	6.00451e-4	1.10108e-5	0.0143625	5.52474e-4
chr1	227767806	227767895	357651	0	+	0.561798	(0.523,0.58]	chr1	40319	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	SNAP47	ENSG00000143740.15	ENST00000681827.1:ENST00000679575.1:ENST00000680854.1:ENST00000681006.1:ENST00000366760.5:ENST00000681447.1:ENST00000680992.1:ENST00000680695.1:ENST00000366759.9:ENST00000315781.10:ENST00000681685.1:ENST00000681678.1:ENST00000681242.1:ENST00000681149.1:ENST00000418653.6:ENST00000617596.5:ENST00000681929.1:ENST00000478768.3:ENST00000426344.6:ENST00000680202.1:ENST00000679561.1:ENST00000681465.1:ENST00000491439.2:ENST00000681554.1:ENST00000681252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	312	2	7.39858	7.650045	7.90151	7.41711e-4	2.71794e-6	0.0160724	2.04763e-4
chr7	97971634	97971734	3647667	0	-	0.49	(0.485,0.523]	chr7	351036	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000284707:CCZ1P1	ENSG00000284707.2:ENSG00000243554.1	ENST00000641784.1:ENST00000641390.1:ENST00000453589.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	2	904	2	6.08555	7.6495299999999995	9.21351	1.60667e-5	9.03758e-7	0.00231019	9.79814e-5
chr22	50234922	50235021	7827210	0	-	0.646465	(0.58,1]	chr22	821200	10	INTRON	INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	299	2	7.5529	7.6487300000000005	7.74456	1.86235e-4	1.40636e-6	0.00769604	1.31121e-4
chr2	239281777	239281877	1391526	0	-	0.41	(0.39,0.419]	chr2	148740	302	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	333	2	7.10499	7.648624999999999	8.19226	0.00213479	2.83541e-6	0.0290686	2.11267e-4
chr22	50711114	50711214	7755296	0	+	0.63	(0.58,1]	chr22	812778	1	SS3_PROX	SS3_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	774	2	6.68655	7.64818	8.60981	1.25759e-5	5.86047e-8	0.0020723	1.63767e-5
chr14	105215772	105215870	6058155	0	-	0.510204	(0.485,0.523]	chr14	594783	25	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000392557.8:ENST00000446501.6:ENST00000635152.1:ENST00000547374.5:ENST00000551787.5:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	310	2	7.53668	7.647584999999999	7.75849	5.55391e-4	4.68783e-6	0.0137234	3.01071e-4
chr9	87547568	87547668	4175925	0	+	0.49	(0.485,0.523]	chr9	397141	222	INTRON	INTRON	DAPK1	ENSG00000196730.13	ENST00000358077.9:ENST00000469640.6:ENST00000472284.5:ENST00000469067.5:ENST00000408954.8:ENST00000622514.4:ENST00000496522.5:ENST00000472344.1:ENST00000491893.5:ENST00000489291.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	310	2	7.5178	7.64723	7.77666	5.7709e-4	4.41961e-6	0.0140531	2.8801e-4
chr4	887758	887857	2178480	0	-	0.50505	(0.485,0.523]	chr4	220626	21	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	911	2	6.44212	7.647085000000001	8.85205	3.50978e-5	2.69557e-7	0.00328321	4.41707e-5
chr7	27114739	27114839	3559809	0	-	0.34	(0.33,0.36]	chr7	343721	10	INTRON	INTRON	HOXA3	ENSG00000105997.23	ENST00000396352.8:ENST00000612286.5:ENST00000317201.7:ENST00000522788.5:ENST00000521401.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	314	2	7.62526	7.64584	7.66642	6.10849e-4	1.10108e-5	0.0145061	5.52474e-4
chr10	76353246	76353346	4529709	0	+	0.48	(0.45,0.485]	chr10	432328	63	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593699.5:ENST00000372499.5:ENST00000496424.2:ENST00000598708.1:ENST00000488655.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	312	2	7.5372	7.645695	7.75419	6.87469e-4	6.32716e-6	0.0154413	3.72196e-4
chr12	122094462	122094562	5343533	0	+	0.51	(0.485,0.523]	chr12	521864	148	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	317	2	7.41983	7.644985	7.87014	2.80185e-4	1.3874e-5	0.00950092	6.45948e-4
chr4	87000555	87000654	2079744	0	+	0.333333	(0.33,0.36]	chr4	212193	266	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	344	2	7.09925	7.644695	8.19014	1.97638e-4	6.04067e-5	0.00792934	0.00187976
chr1	2295589	2295688	5168	0	+	0.565657	(0.523,0.58]	chr1	1052	472	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	320	2	7.1638	7.6440150000000004	8.12423	0.00118398	1.30122e-6	0.020806	1.24734e-4
chr16	83917280	83917379	6513097	0	+	0.565657	(0.523,0.58]	chr16	646141	19	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	320	2	7.1638	7.6440150000000004	8.12423	0.00118398	1.30122e-6	0.020806	1.24734e-4
chr16	83916882	83916981	6513093	0	+	0.575758	(0.523,0.58]	chr16	646141	15	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	338	2	6.92683	7.64344	8.36005	0.00188118	5.91432e-7	0.0270971	7.40609e-5
chrX	1595932	1596032	7830203	0	+	0.52	(0.485,0.523]	chrX	822079	4	SS5_PROX	SS5_PROX:INTRON	AKAP17A	ENSG00000197976.12	ENST00000313871.9:ENST00000474361.6:ENST00000381261.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	309	2	7.53668	7.642995	7.74931	5.55391e-4	4.82922e-6	0.0137234	3.08032e-4
chr10	79220773	79220873	4533569	0	+	0.5	(0.485,0.523]	chr10	432457	41	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	833	2	6.50767	7.64278	8.77789	5.73462e-5	1.58634e-7	0.00421737	3.12332e-5
chr9	133734403	133734503	4427927	0	-	0.33	(0.29,0.33]	chr9	423135	2	SS3_PROX	SS3_PROX:INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000427237.6:ENST00000298628.6	protein_coding	protein_coding	protein_coding	protein_coding	0	312	2	7.34268	7.6420449999999995	7.94141	7.01314e-4	2.91823e-6	0.0156107	2.16191e-4
chr10	132597122	132597222	4617432	0	+	0.49	(0.485,0.523]	chr10	441139	586	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	309	2	7.48901	7.641815	7.79462	6.11769e-4	4.16953e-6	0.0145086	2.78321e-4
chr11	70764067	70764167	5061922	0	-	0.53	(0.523,0.58]	chr11	492701	462	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	320	2	7.34013	7.641205	7.94228	2.44062e-4	1.66718e-5	0.00884339	7.38685e-4
chr12	46783029	46783129	5221025	0	+	0.47	(0.45,0.485]	chr12	506670	1306	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2	lncRNA	lncRNA	lncRNA	lncRNA	0	326	2	7.28587	7.64104	7.99621	2.74729e-4	2.71448e-5	0.00943643	0.00104767
chr2	111401912	111402012	1252655	0	-	0.51	(0.485,0.523]	chr2	134896	236	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1	lncRNA	lncRNA	lncRNA	lncRNA	0	310	2	7.40929	7.64102	7.87275	7.18613e-4	3.2336e-6	0.0158219	2.31758e-4
chrX	9492795	9492895	7842722	0	+	0.5	(0.485,0.523]	chrX	822398	270	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	0	309	2	7.62754	7.640865	7.65419	4.61541e-4	6.56483e-6	0.0123746	3.8256e-4
chr12	113836886	113836986	5509237	0	-	0.53	(0.523,0.58]	chr12	542458	132	INTRON	INTRON	RBM19	ENSG00000122965.11	ENST00000545145.6:ENST00000392561.7:ENST00000261741.10:ENST00000552384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	668	2	6.716	7.6404499999999995	8.5649	6.58255e-5	4.93904e-7	0.00450708	6.59235e-5
chr17	76547696	76547795	6977082	0	-	0.373737	(0.36,0.39]	chr17	712268	14	INTRON	INTRON	CYGB:ENSG00000267546	ENSG00000161544.10:ENSG00000267546.2	ENST00000589145.1:ENST00000589963.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	323	2	7.22582	7.64016	8.0545	0.00165912	4.26867e-6	0.0252015	2.82803e-4
chr19	49981738	49981824	7397882	0	-	0.616279	(0.58,1]	chr19	769490	2	UTR3	UTR3:EXON_MRNA:INTRON	VRK3	ENSG00000105053.11	ENST00000316763.8:ENST00000377011.6:ENST00000599538.5:ENST00000596814.5:ENST00000601341.5:ENST00000594948.5:ENST00000601912.5:ENST00000594092.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	304	2	7.4339	7.64006	7.84622	9.34362e-5	4.24175e-6	0.00538091	2.81464e-4
chr14	54790632	54790732	5821703	0	+	0.47	(0.45,0.485]	chr14	569165	18	UTR3	UTR3:EXON_MRNA	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9	protein_coding	protein_coding	protein_coding	protein_coding	3	2688	2	7.44129	7.639725	7.83816	3.74526e-6	1.62786e-8	0.00122199	7.13901e-6
chr8	127874928	127875028	3918596	0	+	0.61	(0.58,1]	chr8	374193	145	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000521122.2:ENST00000520913.2:ENST00000519481.6:ENST00000651568.1:ENST00000669082.1:ENST00000665166.1:ENST00000656948.1:ENST00000671088.1:ENST00000664924.1:ENST00000670204.1:ENST00000652695.1	lncRNA	lncRNA	lncRNA	lncRNA	0	297	2	7.53364	7.6391	7.74456	1.9478e-4	1.40636e-6	0.00785001	1.31121e-4
chr21	45134514	45134614	7629266	0	+	0.59	(0.58,1]	chr21	797547	4	SS3_PROX	SS3_PROX:INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5:ENST00000449478.1:ENST00000464215.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	302	2	7.26828	7.63818	8.00808	3.5916e-4	5.41963e-7	0.0108463	6.98748e-5
chr12	122094162	122094262	5343530	0	+	0.51	(0.485,0.523]	chr12	521864	145	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	315	2	7.41983	7.6375	7.85517	2.89001e-4	1.3874e-5	0.0096494	6.45948e-4
chr20	64270589	64270688	7511218	0	+	0.414141	(0.39,0.419]	chr20	783907	22	INTRON	INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609818.1	protein_coding	protein_coding	protein_coding	protein_coding	0	320	2	7.44977	7.6374949999999995	7.82522	5.55942e-4	2.66913e-5	0.0137234	0.00103407
chr19	19074706	19074806	7225616	0	+	0.47	(0.45,0.485]	chr19	739606	102	INTRON	INTRON	SLC25A42	ENSG00000181035.14	ENST00000318596.8:ENST00000597661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	681	2	6.51282	7.637315	8.76181	5.69631e-5	1.35188e-6	0.00419681	1.28072e-4
chr13	97345805	97345905	5632043	0	+	0.35	(0.33,0.36]	chr13	553194	22	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	312	2	7.48761	7.636685	7.78576	7.99864e-4	7.6296e-6	0.0167977	4.24523e-4
chr3	10887093	10887193	1408403	0	+	0.46	(0.45,0.485]	chr3	151278	116	INTRON	INTRON	SLC6A11	ENSG00000132164.10	ENST00000254488.7	protein_coding	protein_coding	protein_coding	protein_coding	0	394	2	6.50739	7.635915000000001	8.76444	0.00482293	2.40191e-7	0.0453395	4.07877e-5
chr21	43750845	43750945	7624125	0	+	0.57	(0.523,0.58]	chr21	796772	3	SS5_PROX	SS5_PROX:INTRON	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000498040.5:ENST00000481512.5:ENST00000490666.5:ENST00000467908.1:ENST00000343528.10:ENST00000398078.7:ENST00000468392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	699	2	6.15861	7.635745	9.11288	2.02929e-5	3.21757e-6	0.00260584	2.30832e-4
chr2	239079995	239080094	1389470	0	-	0.525253	(0.523,0.58]	chr2	148587	107	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000494800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	307	2	7.55488	7.63526	7.71564	5.40881e-4	4.99148e-6	0.0135788	3.15032e-4
chr9	123674341	123674440	4399330	0	-	0.464646	(0.45,0.485]	chr9	419698	26	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1:ENST00000474676.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	341	2	7.08374	7.635095	8.18645	1.86652e-4	5.00903e-5	0.00769604	0.00164756
chr20	64021175	64021273	7510613	0	+	0.561224	(0.523,0.58]	chr20	783726	40	INTRON	INTRON	PRPF6	ENSG00000101161.8	ENST00000266079.5	protein_coding	protein_coding	protein_coding	protein_coding	1	806	2	6.07428	7.63445	9.19462	1.46477e-4	3.43662e-8	0.00675599	1.16971e-5
chr11	64143766	64143865	5049015	0	-	0.535354	(0.523,0.58]	chr11	490257	170	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	307	2	7.48857	7.634435	7.7803	6.18664e-4	4.04324e-6	0.0145945	2.73258e-4
chr2	190953904	190953993	976267	0	+	0.483146	(0.45,0.485]	chr2	107495	3	SS5_PROX	SS5_PROX:INTRON	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000457316.5:ENST00000409428.5:ENST00000412247.1	protein_coding	protein_coding	protein_coding	protein_coding	0	310	2	7.62749	7.634135000000001	7.64078	5.75076e-4	9.04119e-6	0.0140419	4.78548e-4
chr5	14349197	14349297	2385424	0	+	0.46	(0.45,0.485]	chr5	238535	121	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000512070.6:ENST00000509967.6:ENST00000513206.5:ENST00000515144.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	311	2	7.39019	7.63316	7.87613	9.17281e-4	4.29878e-6	0.0180726	2.82921e-4
chr13	19696482	19696582	5660572	0	-	0.36	(0.33,0.36]	chr13	556035	175	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	689	2	6.63154	7.63312	8.6347	7.97128e-5	1.18983e-6	0.00495996	1.16995e-4
chr10	133349388	133349487	4783428	0	-	0.545455	(0.523,0.58]	chr10	457516	32	INTRON	INTRON	ENSG00000226699	ENSG00000226699.1	ENST00000452591.1	lncRNA	lncRNA	lncRNA	lncRNA	0	325	2	7.2254	7.631755	8.03811	1.99936e-4	2.39394e-5	0.00798199	9.57041e-4
chr16	8711736	8711836	6381507	0	+	0.49	(0.485,0.523]	chr16	631147	283	INTRON	INTRON	ABAT	ENSG00000183044.12	ENST00000564714.5:ENST00000268251.13:ENST00000563992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	317	2	7.16424	7.63166	8.09908	0.0011719	1.53886e-6	0.0206836	1.3934e-4
chr2	3220241	3220341	1080303	0	-	0.46	(0.45,0.485]	chr2	117609	56	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000482570.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	324	2	7.09341	7.631615	8.16982	0.00162663	1.67683e-6	0.0249683	1.47289e-4
chr1	23393378	23393478	424249	0	-	0.48	(0.45,0.485]	chr1	49808	1	SS5_PROX	SS5_PROX:INTRON	TCEA3	ENSG00000204219.11	ENST00000450454.7:ENST00000476978.2	protein_coding	protein_coding	protein_coding	protein_coding	0	309	2	7.50897	7.63158	7.75419	7.26773e-4	6.32716e-6	0.0158761	3.72196e-4
chr14	74858836	74858935	5885602	0	+	0.474747	(0.45,0.485]	chr14	574704	36	UTR3	UTR3:EXON_MRNA	YLPM1	ENSG00000119596.18	ENST00000554107.2	protein_coding	protein_coding	protein_coding	protein_coding	0	311	2	7.36941	7.63107	7.89273	9.55229e-4	4.07748e-6	0.0184882	2.74028e-4
chr9	137781101	137781200	4266120	0	+	0.575758	(0.523,0.58]	chr9	407438	10	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	309	2	7.33531	7.63076	7.92621	8.42028e-4	2.5058e-6	0.0172456	1.94472e-4
chr16	89432325	89432425	6661157	0	-	0.66	(0.58,1]	chr16	666753	6	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	298	2	7.3254	7.629675000000001	7.93395	3.15151e-4	7.09723e-7	0.0100952	8.36689e-5
chr16	2164101	2164201	6372943	0	+	0.73	(0.58,1]	chr16	629423	1	SS5_PROX	SS5_PROX:INTRON	TRAF7	ENSG00000131653.13	ENST00000565383.5:ENST00000569686.5:ENST00000326181.11:ENST00000567653.5:ENST00000564067.5:ENST00000567645.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	295	2	7.5529	7.6291899999999995	7.70548	1.86235e-4	1.6179e-6	0.00769604	1.43996e-4
chr16	1735166	1735266	6371290	0	+	0.62	(0.58,1]	chr16	628850	2	PRIMIRNA	PRIMIRNA:INTRON	MAPK8IP3:MIR3177	ENSG00000138834.15:ENSG00000265820.1	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1:ENST00000578255.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:processed_transcript:primary_miRNA	0	297	2	7.35862	7.62918	7.89974	2.92006e-4	8.03486e-7	0.00970248	9.11123e-5
chr11	70776458	70776558	5062046	0	-	0.51	(0.485,0.523]	chr11	492701	586	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	317	2	7.33651	7.628914999999999	7.92132	2.51966e-4	1.80479e-5	0.0089849	7.82415e-4
chr22	42949625	42949725	7823627	0	-	0.45	(0.419,0.45]	chr22	820622	27	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000407585.5:ENST00000402229.5:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5:ENST00000453079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	707	2	6.56862	7.628045	8.68747	1.34622e-4	2.16387e-6	0.0064557700000000004	1.7578e-4
chr16	1739603	1739701	6371335	0	+	0.602041	(0.58,1]	chr16	628851	42	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	620	2	6.889	7.627075	8.36515	2.68701e-5	8.727e-8	0.00294278	2.17411e-5
chr16	87738726	87738826	6656468	0	-	0.57	(0.523,0.58]	chr16	665892	77	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	661	2	6.67903	7.626545	8.57406	6.45528e-5	5.5998e-7	0.00446482	7.12473e-5
chr21	43975362	43975461	7625545	0	+	0.585859	(0.58,1]	chr21	796959	35	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000398063.6:ENST00000398058.5:ENST00000546158.1:ENST00000479117.5:ENST00000467358.5:ENST00000484865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	295	2	7.43327	7.62647	7.81967	2.45837e-4	1.07326e-6	0.00885847	1.09308e-4
chr19	39158244	39158344	7259591	0	+	0.59	(0.58,1]	chr19	744161	10	INTRON	INTRON	PAK4	ENSG00000130669.17	ENST00000602004.1:ENST00000599470.5:ENST00000360442.8:ENST00000321944.8:ENST00000593480.5:ENST00000358301.7:ENST00000593690.5:ENST00000599386.5:ENST00000599657.5	protein_coding	protein_coding	protein_coding	protein_coding	0	297	2	7.52649	7.62529	7.72409	1.247e-4	3.06007e-6	0.00618972	2.22941e-4
chr11	70764667	70764767	5061928	0	-	0.49	(0.485,0.523]	chr11	492701	468	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	675	2	6.3214	7.625249999999999	8.9291	2.97307e-5	1.99163e-6	0.00307209	1.66245e-4
chr16	85451410	85451510	6517585	0	+	0.65	(0.58,1]	chr16	646391	921	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	352	2	6.83512	7.624245	8.41337	3.30003e-5	2.3898e-5	0.00282051	0.00120982
chr10	34684764	34684863	4670504	0	-	0.383838	(0.36,0.39]	chr10	445537	52	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	1	727	2	6.99079	7.622945	8.2551	2.32664e-4	4.75568e-7	0.0086261	6.41524e-5
chr1	5873756	5873841	386552	0	-	0.611765	(0.58,1]	chr1	44374	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NPHP4	ENSG00000131697.18	ENST00000378156.9:ENST00000478423.6:ENST00000489180.6:ENST00000378169.7:ENST00000468253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	305	2	7.12119	7.622465	8.12374	5.01526e-4	3.55073e-7	0.0129939	5.29131e-5
chr11	70818164	70818264	5062465	0	-	0.48	(0.45,0.485]	chr11	492713	106	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	308	2	7.59076	7.622135	7.65351	5.46137e-4	1.0574e-5	0.0136476	5.35058e-4
chr16	83917081	83917180	6513095	0	+	0.59596	(0.58,1]	chr16	646141	17	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	309	2	7.05519	7.622059999999999	8.18893	5.81818e-4	2.79472e-7	0.0141176	4.50012e-5
chr13	113012065	113012165	5655744	0	+	0.61	(0.58,1]	chr13	555138	97	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	315	2	7.17254	7.621245	8.06995	5.47978e-5	1.05286e-5	0.00409825	5.33404e-4
chr13	113012864	113012964	5655752	0	+	0.65	(0.58,1]	chr13	555138	105	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	297	2	7.49246	7.62091	7.74936	1.17491e-4	3.45114e-6	0.00604041	2.43327e-4
chr5	55974920	55975019	2662016	0	-	0.40404	(0.39,0.419]	chr5	264001	47	INTRON	INTRON	IL6ST	ENSG00000134352.20	ENST00000381298.7:ENST00000336909.9:ENST00000381287.8:ENST00000651614.1:ENST00000503773.6:ENST00000502326.7:ENST00000381294.7:ENST00000381293.6:ENST00000381286.7:ENST00000522633.2:ENST00000577363.1:ENST00000396816.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	311	2	7.46662	7.62054	7.77446	0.00109526	1.0132e-5	0.0199429	5.17686e-4
chr8	142299585	142299685	4094036	0	-	0.52	(0.485,0.523]	chr8	388979	147	INTRON	INTRON	TSNARE1	ENSG00000171045.16	ENST00000524325.6:ENST00000307180.4:ENST00000520166.5:ENST00000519651.5:ENST00000662555.1	protein_coding	protein_coding	protein_coding	protein_coding	0	304	2	7.46949	7.618545	7.7676	6.36415e-4	4.55136e-6	0.0148327	2.94841e-4
chr13	112872879	112872975	5654401	0	+	0.5625	(0.523,0.58]	chr13	555052	7	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000471555.5:ENST00000415301.2:ENST00000419631.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	670	2	6.89503	7.61832	8.34161	1.05715e-4	2.68308e-7	0.00574304	4.40947e-5
chr21	33577631	33577727	7652922	0	-	0.458333	(0.45,0.485]	chr21	800732	2	UTR3	UTR3:EXON_MRNA:INTRON	DONSON	ENSG00000159147.18	ENST00000439593.1:ENST00000303113.10:ENST00000453626.5:ENST00000303071.10:ENST00000457359.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	309	2	7.49611	7.61656	7.73701	4.62504e-4	1.42008e-5	0.0123892	6.57379e-4
chr10	47532482	47532582	4680507	0	-	0.51	(0.485,0.523]	chr10	446443	86	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	1	795	2	6.12481	7.616035	9.10726	1.3029e-4	5.16799e-8	0.00633355	1.54848e-5
chr1	67409408	67409508	505874	0	-	0.5	(0.485,0.523]	chr1	60117	17	UTR3	UTR3:EXON_MRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11	protein_coding	protein_coding	protein_coding	protein_coding	1	680	2	6.22289	7.61595	9.00901	2.50203e-5	2.76159e-6	0.00286113	2.07145e-4
chr19	16853658	16853754	7217908	0	+	0.552083	(0.523,0.58]	chr19	737639	1	SS3_PROX	SS3_PROX:INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000596802.5:ENST00000596638.1	protein_coding	protein_coding	protein_coding	protein_coding	0	321	2	7.02366	7.615425	8.20719	0.00155872	9.86927e-7	0.0243306	1.04311e-4
chr19	6678872	6678955	7322506	0	-	0.493976	(0.485,0.523]	chr19	756371	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000599899.5:ENST00000695690.1:ENST00000695691.1:ENST00000695689.1:ENST00000695653.1:ENST00000695654.1:ENST00000602229.1:ENST00000599668.1:ENST00000601008.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	893	2	6.42844	7.615325	8.80221	3.90684e-5	2.82432e-7	0.00348985	4.54107e-5
chr17	65537935	65538018	6950637	0	-	0.638554	(0.58,1]	chr17	709205	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AXIN2	ENSG00000168646.14	ENST00000307078.10:ENST00000618960.4:ENST00000375702.5	protein_coding	protein_coding	protein_coding	protein_coding	1	729	2	6.41246	7.614465000000001	8.81647	2.472e-5	2.69694e-8	0.00285089	1.00653e-5
chr20	49149187	49149287	7572608	0	-	0.51	(0.485,0.523]	chr20	791289	129	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	1	804	2	6.36338	7.614405	8.86543	7.82182e-5	1.17868e-7	0.00492443	2.59103e-5
chr16	89914478	89914572	6526321	0	+	0.56383	(0.523,0.58]	chr16	647716	10	UTR5	UTR5:EXON_MRNA:INTRON	ENSG00000267048:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000539976.1:ENST00000555427.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	2	1888	2	6.59508	7.613165	8.63125	4.80199e-5	6.36151e-10	0.00382077	1.01538e-6
chr11	112254479	112254579	4942409	0	+	0.45	(0.419,0.45]	chr11	476600	166	INTRON	INTRON	PTS	ENSG00000150787.8	ENST00000531673.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	313	2	7.52692	7.61306	7.6992	8.67988e-4	2.53648e-5	0.0175702	9.97976e-4
chr1	1845879	1845979	384135	0	-	0.42	(0.419,0.45]	chr1	43823	58	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	311	2	7.60779	7.61126	7.61473	0.00101372	2.00245e-5	0.0191342	8.4139e-4
chr10	132754872	132754972	4619021	0	+	0.48	(0.45,0.485]	chr10	441201	10	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	0	310	2	7.24942	7.611219999999999	7.97302	0.0012056600000000001	3.15599e-6	0.0210584	2.27679e-4
chr2	239269186	239269286	1391400	0	-	0.47	(0.45,0.485]	chr2	148740	176	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	671	2	6.42472	7.6109849999999994	8.79725	5.29075e-5	1.80259e-6	0.00403818	1.55329e-4
chr1	225590047	225590147	673375	0	-	0.49	(0.485,0.523]	chr1	79189	99	INTRON	INTRON	ENAH	ENSG00000154380.19	ENST00000366843.7:ENST00000366844.7:ENST00000635051.1:ENST00000284563.7	protein_coding	protein_coding	protein_coding	protein_coding	0	308	2	7.41983	7.610685	7.80154	3.22875e-4	1.3874e-5	0.0102338	6.45948e-4
chr4	3362598	3362698	2005062	0	+	0.59	(0.58,1]	chr4	204663	192	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	291	2	7.50425	7.6098	7.71535	2.08552e-4	1.5617e-6	0.00813372	1.40814e-4
chr22	50234723	50234822	7827208	0	-	0.636364	(0.58,1]	chr22	821200	8	INTRON	INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	291	2	7.49432	7.609735000000001	7.72515	2.13416e-4	1.50778e-6	0.00826482	1.37398e-4
chr8	38770193	38770292	3802257	0	+	0.525253	(0.523,0.58]	chr8	365828	124	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	653	2	6.53933	7.6095299999999995	8.67973	5.15196e-5	8.98627e-7	0.00397996	9.79369e-5
chr20	38426950	38427039	7561095	0	-	0.47191	(0.45,0.485]	chr20	789769	6	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000671309.1:ENST00000669405.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	5	1371	2	5.71454	7.608779999999999	9.50302	1.19934e-5	7.85213e-7	0.00201743	8.97097e-5
chr6	15264558	15264658	2856692	0	+	0.44	(0.419,0.45]	chr6	279178	152	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	714	2	6.21092	7.608155	9.00539	7.28761e-5	6.4546e-6	0.00477703	3.78104e-4
chr2	233165423	233165523	1058280	0	+	0.45	(0.419,0.45]	chr2	115120	6	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493078.1:ENST00000472517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	312	2	7.34794	7.607945000000001	7.8679500000000004	0.00164606	9.28359e-6	0.0250898	4.87842e-4
chr12	122094262	122094362	5343531	0	+	0.53	(0.523,0.58]	chr12	521864	146	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	312	2	7.31541	7.60729	7.89917	2.66882e-4	1.80285e-5	0.0092576	7.82415e-4
chr3	13205425	13205525	1691196	0	-	0.55	(0.523,0.58]	chr3	176566	409	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	301	2	7.51737	7.6069949999999995	7.69662	5.83644e-4	5.30976e-6	0.0141349	3.28939e-4
chr9	128956149	128956249	4248792	0	+	0.45	(0.419,0.45]	chr9	404214	4	SS3_PROX	SS3_PROX:INTRON	NUP188	ENSG00000095319.14	ENST00000372577.2:ENST00000491990.5:ENST00000550219.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	310	2	7.43919	7.606945	7.7747	0.00139594	1.22452e-5	0.0228423	5.92597e-4
chr7	111217108	111217208	3684235	0	-	0.42	(0.419,0.45]	chr7	354615	2532	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	311	2	7.54756	7.6067800000000005	7.666	9.22665e-4	2.38821e-5	0.0181216	9.56571e-4
chr21	43750945	43751045	7624126	0	+	0.53	(0.523,0.58]	chr21	796772	4	SS5_PROX	SS5_PROX:INTRON	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000498040.5:ENST00000481512.5:ENST00000490666.5:ENST00000467908.1:ENST00000343528.10:ENST00000398078.7:ENST00000468392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	301	2	7.54559	7.606605	7.66762	5.51177e-4	5.83386e-6	0.0136794	3.51962e-4
chr16	83917379	83917479	6513098	0	+	0.58	(0.523,0.58]	chr16	646141	20	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	301	2	7.44927	7.605695000000001	7.76212	6.69765e-4	4.29035e-6	0.0152294	2.82813e-4
chr6	129668381	129668481	3259499	0	-	0.36	(0.33,0.36]	chr6	315424	260	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	0	310	2	7.42757	7.60511	7.78265	4.4756e-4	2.27499e-5	0.0121721	9.24227e-4
chr6	602217	602317	3078182	0	-	0.51	(0.485,0.523]	chr6	299385	26	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	0	308	2	7.20021	7.6049500000000005	8.00969	0.00109136	2.06548e-6	0.0198839	1.7021e-4
chr17	81138498	81138598	6982887	0	-	0.58	(0.523,0.58]	chr17	713268	36	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	302	2	7.55598	7.604635	7.65329	4.42635e-4	8.36731e-6	0.0121006	4.52433e-4
chr2	233165523	233165622	1058281	0	+	0.444444	(0.419,0.45]	chr2	115120	7	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493078.1:ENST00000472517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	309	2	7.53423	7.604620000000001	7.67501	0.00117443	1.64363e-5	0.0207078	7.3104e-4
chr16	431118	431217	6366840	0	+	0.464646	(0.45,0.485]	chr16	627760	40	INTRON	INTRON	RAB11FIP3	ENSG00000090565.17	ENST00000262305.9:ENST00000434585.5	protein_coding	protein_coding	protein_coding	protein_coding	0	303	2	7.55572	7.603149999999999	7.65058	6.62812e-4	8.76749e-6	0.0151276	4.67292e-4
chr13	93693385	93693485	5622447	0	+	0.33	(0.29,0.33]	chr13	553058	1476	INTRON	INTRON	GPC6	ENSG00000183098.11	ENST00000377047.9	protein_coding	protein_coding	protein_coding	protein_coding	0	311	2	7.13427	7.603035	8.0718	0.00107154	1.90987e-6	0.0197123	1.6159e-4
chr22	29828000	29828100	7784837	0	-	0.48	(0.45,0.485]	chr22	816449	4	SS3_PROX	SS3_PROX:INTRON	ASCC2	ENSG00000100325.15	ENST00000542393.5:ENST00000307790.8:ENST00000458594.5:ENST00000397771.6:ENST00000449900.6:ENST00000431535.5:ENST00000495967.5:ENST00000412689.5:ENST00000465667.6:ENST00000495681.5:ENST00000462454.1:ENST00000453160.5:ENST00000460313.1:ENST00000454854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	303	2	7.56489	7.602835000000001	7.64078	6.50921e-4	9.04119e-6	0.0149908	4.78548e-4
chr21	46404069	46404168	7633020	0	+	0.606061	(0.58,1]	chr21	798231	12	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5	protein_coding	protein_coding	protein_coding	protein_coding	0	291	2	7.35862	7.602735	7.84685	2.92006e-4	9.72929e-7	0.00970248	1.03091e-4
chr13	20497593	20497693	5662816	0	-	0.45	(0.419,0.45]	chr13	556208	77	INTRON	INTRON	CRYL1	ENSG00000165475.15	ENST00000643035.1:ENST00000644593.1:ENST00000298248.12:ENST00000644872.1:ENST00000382812.5:ENST00000643750.1:ENST00000644153.1:ENST00000643887.1:ENST00000644167.1:ENST00000646414.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	319	2	7.31446	7.602715	7.89097	6.0852e-4	4.69009e-5	0.0144778	0.00157191
chr3	188265852	188265952	1652917	0	+	0.38	(0.36,0.39]	chr3	173754	253	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	0	308	2	7.37801	7.602485	7.82696	0.0012506	8.53594e-6	0.0215229	4.57865e-4
chrX	9609304	9609404	7843893	0	+	0.49	(0.485,0.523]	chrX	822423	484	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	305	2	7.44278	7.60238	7.76198	3.50313e-4	1.29007e-5	0.0106878	6.14919e-4
chr13	112913016	112913116	5654746	0	+	0.44	(0.419,0.45]	chr13	555099	25	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000442625.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	342	2	7.02161	7.602124999999999	8.18264	3.52234e-4	1.07601e-4	0.0107244	0.00289045
chr5	856177	856276	2607916	0	-	0.494949	(0.485,0.523]	chr5	259417	52	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	0	325	2	6.92726	7.601445	8.27563	0.00186327	8.57336e-7	0.0269723	9.48667e-5
chr13	113058895	113058994	5656226	0	+	0.525253	(0.523,0.58]	chr13	555189	41	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	320	2	7.17132	7.6014	8.03148	2.02723e-4	2.83567e-5	0.00805364	0.00107991
chr3	13200226	13200326	1691144	0	-	0.45	(0.419,0.45]	chr3	176566	357	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	308	2	7.5434	7.59976	7.65612	0.00115496	1.73755e-5	0.0205679	7.60727e-4
chr1	45551935	45552035	115331	0	+	0.39	(0.36,0.39]	chr1	14403	1	SS3_PROX	SS3_PROX:INTRON	AKR1A1	ENSG00000117448.14	ENST00000372070.7:ENST00000621846.4:ENST00000434299.5:ENST00000351829.9:ENST00000496999.5:ENST00000476957.5:ENST00000481885.5:ENST00000471651.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	310	2	7.45035	7.599645000000001	7.74894	6.20188e-4	2.63375e-5	0.0146109	0.00102154
chr9	76768538	76768637	4168970	0	+	0.40404	(0.39,0.419]	chr9	396206	36	INTRON	INTRON	PCA3	ENSG00000225937.3	ENST00000645196.1:ENST00000643823.1:ENST00000644657.1:ENST00000644302.1:ENST00000646854.1:ENST00000645887.1:ENST00000642794.1:ENST00000642205.1:ENST00000412654.1:ENST00000645809.1:ENST00000647300.1:ENST00000647409.1	lncRNA	lncRNA	lncRNA	lncRNA	0	314	2	7.35869	7.599475	7.84026	5.40187e-4	3.48906e-5	0.0135788	0.00126097
chr1	205746471	205746571	648793	0	-	0.38	(0.36,0.39]	chr1	76905	153	INTRON	INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	0	306	2	7.45827	7.598815	7.73936	0.00107605	1.11199e-5	0.0197563	5.54827e-4
chrX	2225327	2225427	7966091	0	-	0.46	(0.45,0.485]	chrX	834328	37	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11	protein_coding	protein_coding	protein_coding	protein_coding	0	306	2	7.45197	7.598535	7.7451	4.55096e-4	1.6284e-5	0.012283	7.25583e-4
chr4	2826505	2826595	2000384	0	+	0.522222	(0.485,0.523]	chr4	203975	3	EXON_MRNA	EXON_MRNA:INTRON	SH3BP2	ENSG00000087266.17	ENST00000503393.8:ENST00000504294.5:ENST00000508385.5:ENST00000511663.5:ENST00000512014.5:ENST00000435136.8:ENST00000511185.5:ENST00000511747.6:ENST00000356331.9:ENST00000515737.5:ENST00000515183.5:ENST00000505941.5:ENST00000510204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	304	2	7.25823	7.598520000000001	7.93881	9.72503e-4	2.60587e-6	0.0187452	1.99489e-4
chr8	128041168	128041266	3920293	0	+	0.428571	(0.419,0.45]	chr8	374321	9	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	0	317	2	7.15805	7.598075	8.0381	0.0023114	5.58092e-6	0.0302623	3.4133e-4
chr2	111421809	111421909	1252854	0	-	0.49	(0.485,0.523]	chr2	134896	435	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1	lncRNA	lncRNA	lncRNA	lncRNA	0	303	2	7.28081	7.5976	7.91439	9.29716e-4	2.82255e-6	0.0182159	2.10589e-4
chr21	45500934	45501033	7631314	0	+	0.565657	(0.523,0.58]	chr21	797812	29	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	0	314	2	7.2386	7.59748	7.95636	2.37025e-4	2.29668e-5	0.0086821	9.29664e-4
chr20	64270292	64270391	7511215	0	+	0.59596	(0.58,1]	chr20	783907	19	INTRON	INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609818.1	protein_coding	protein_coding	protein_coding	protein_coding	2	1035	2	6.29352	7.597284999999999	8.90105	1.0566e-5	1.96015e-8	0.0019145	8.14849e-6
chr18	13262145	13262245	7023182	0	+	0.65	(0.58,1]	chr18	717514	428	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000590371.5:ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000590115.1:ENST00000677055.1:ENST00000399848.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	290	2	7.54874	7.597135	7.64553	1.49982e-4	2.82822e-6	0.00681825	2.10825e-4
chr4	870041	870125	2178293	0	-	0.535714	(0.523,0.58]	chr4	220581	2	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	299	2	7.46905	7.597055	7.72506	6.43551e-4	4.84091e-6	0.0148938	3.08192e-4
chr18	77118626	77118726	7181507	0	-	0.51	(0.485,0.523]	chr18	730186	130	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1:ENST00000583798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	389	2	6.6014	7.597025	8.59265	1.68998e-4	6.12032e-5	0.00434406	0.0040111
chr17	81138698	81138798	6982889	0	-	0.57	(0.523,0.58]	chr17	713268	38	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	300	2	7.5665	7.596805	7.62711	4.66936e-4	8.08882e-6	0.0124742	4.41353e-4
chr19	15643406	15643506	7215387	0	+	0.33	(0.29,0.33]	chr19	737134	1	SS3_PROX	SS3_PROX:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	716	2	5.92536	7.59601	9.26666	1.11272e-5	7.97638e-6	0.00196041	4.36921e-4
chr8	17769828	17769928	3946116	0	-	0.48	(0.45,0.485]	chr8	376990	113	INTRON	INTRON	MTUS1	ENSG00000129422.15	ENST00000381869.5:ENST00000693296.1:ENST00000262102.10:ENST00000523718.5:ENST00000518755.1:ENST00000518891.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	303	2	7.34832	7.59532	7.84232	9.95275e-4	4.78623e-6	0.0189547	3.06337e-4
chr13	113215062	113215162	5657358	0	+	0.62	(0.58,1]	chr13	555523	46	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000488558.2:ENST00000375440.9:ENST00000474116.5:ENST00000494985.5:ENST00000463426.5:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	288	2	7.49432	7.5949349999999995	7.69555	2.13416e-4	1.6765e-6	0.00826482	1.47289e-4
chr19	735764	735841	7184610	0	+	0.675325	(0.58,1]	chr19	730572	3	SS3_PROX	SS3_PROX:INTRON	PALM	ENSG00000099864.18	ENST00000338448.10:ENST00000264560.11:ENST00000589012.5:ENST00000593172.5:ENST00000633534.1:ENST00000592155.5:ENST00000590161.2:ENST00000587513.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	341	2	6.83512	7.594665	8.35421	3.30003e-5	2.75934e-5	0.00296016	0.00120982
chr16	67438442	67438527	6607686	0	-	0.552941	(0.523,0.58]	chr16	661061	6	UTR3	UTR3:EXON_MRNA	ATP6V0D1	ENSG00000159720.13	ENST00000568620.5:ENST00000290949.8:ENST00000563305.1:ENST00000565835.5:ENST00000426604.7:ENST00000540149.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	305	2	7.18788	7.592874999999999	7.99787	0.00112897	1.97827e-6	0.0202727	1.65213e-4
chr20	47257505	47257605	7569889	0	-	0.29	[0,0.29]	chr20	791018	77	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	626	2	6.64755	7.592499999999999	8.53745	2.16315e-5	4.56584e-7	0.0027064	6.24644e-5
chr21	34116106	34116205	7615145	0	+	0.494949	(0.485,0.523]	chr21	795335	100	INTRON	INTRON	MRPS6	ENSG00000243927.6	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	309	2	7.29927	7.59211	7.88495	2.71717e-4	2.02879e-5	0.00935325	8.47843e-4
chr11	112254379	112254479	4942408	0	+	0.52	(0.485,0.523]	chr11	476600	165	INTRON	INTRON	PTS	ENSG00000150787.8	ENST00000531673.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	301	2	7.48762	7.59197	7.69632	4.00919e-4	1.11881e-5	0.0114335	5.5674e-4
chr12	122093762	122093862	5343526	0	+	0.52	(0.485,0.523]	chr12	521864	141	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	303	2	7.41983	7.590905	7.76198	3.50313e-4	1.3874e-5	0.0106878	6.45948e-4
chr21	43726853	43726952	7623862	0	+	0.525253	(0.523,0.58]	chr21	796696	31	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000438837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	655	2	6.31137	7.590855	8.87034	3.42369e-5	1.9336e-6	0.00325532	1.62777e-4
chr16	18520328	18520412	6559087	0	-	0.369048	(0.36,0.39]	chr16	653701	3	SS5_PROX	SS5_PROX:INTRON	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000381474.7:ENST00000564991.5:ENST00000621364.4:ENST00000622306.5:ENST00000543392.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	304	2	7.48725	7.590365	7.69348	0.00101899	1.27648e-5	0.0191632	6.12982e-4
chr6	31652158	31652234	3119044	0	-	0.592105	(0.58,1]	chr6	303155	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BAG6	ENSG00000204463.14	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.2:ENST00000375976.8:ENST00000362049.10:ENST00000439687.6:ENST00000437771.5:ENST00000435080.5:ENST00000456622.5:ENST00000451898.5:ENST00000424480.5:ENST00000424176.5:ENST00000441054.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	287	2	7.49432	7.58993	7.68554	2.13416e-4	1.7376e-6	0.00826482	1.51436e-4
chr19	944414	944513	7185290	0	+	0.646465	(0.58,1]	chr19	730741	113	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	294	2	7.37287	7.58976	7.80665	1.02618e-4	5.25408e-6	0.00566453	3.26574e-4
chr19	7640156	7640197	7199316	0	+	0.463415	(0.45,0.485]	chr19	733970	1	SS5_PROX	SS5_PROX:INTRON	STXBP2	ENSG00000076944.17	ENST00000593535.5:ENST00000595950.5:ENST00000221283.10:ENST00000441779.6:ENST00000597068.5:ENST00000414284.6:ENST00000599737.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	300	2	7.50897	7.589475	7.66998	7.26773e-4	8.24934e-6	0.0158761	4.47929e-4
chr4	139666077	139666177	2134015	0	+	0.6	(0.58,1]	chr4	216775	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MGST2	ENSG00000085871.9	ENST00000616265.4:ENST00000265498.6:ENST00000506797.5:ENST00000515137.5:ENST00000502587.1:ENST00000503816.1:ENST00000515067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	320	2	7.00565	7.58939	8.17313	4.27594e-5	1.8613e-5	0.00362006	8.01738e-4
chr8	25239378	25239477	3774632	0	+	0.494949	(0.485,0.523]	chr8	363466	541	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000410074.5:ENST00000481100.5	protein_coding	protein_coding	protein_coding	protein_coding	0	313	2	7.22177	7.589285	7.9568	2.34053e-4	2.58512e-5	0.00863036	0.0010125
chr18	74915520	74915620	7092437	0	+	0.52	(0.485,0.523]	chr18	722466	97	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	304	2	7.38471	7.589215	7.79372	3.28131e-4	1.55038e-5	0.010311	7.00888e-4
chr22	25488024	25488123	7701424	0	+	0.474747	(0.45,0.485]	chr22	805972	265	INTRON	INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000686640.1:ENST00000509460.3:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	315	2	7.22159	7.58827	7.95495	2.98616e-4	3.30215e-5	0.00982269	0.00120982
chr19	2204065	2204163	7188899	0	+	0.591837	(0.58,1]	chr19	731581	9	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	0	306	2	7.15814	7.586795	8.01545	6.24389e-5	1.10629e-5	0.00438983	5.52474e-4
chr5	856873	856973	2607923	0	-	0.52	(0.485,0.523]	chr5	259417	59	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	0	355	2	6.60829	7.58629	8.56429	0.00342137	3.26335e-7	0.0374749	5.01278e-5
chr5	14348499	14348599	2385417	0	+	0.46	(0.45,0.485]	chr5	238535	114	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000512070.6:ENST00000509967.6:ENST00000513206.5:ENST00000515144.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	300	2	7.57026	7.585625	7.60099	6.06072e-4	1.12733e-5	0.0144497	5.59324e-4
chr4	709559	709659	1993723	0	+	0.54	(0.523,0.58]	chr4	203088	32	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	299	2	7.3026	7.58525	7.8679	8.98889e-4	3.03516e-6	0.0178386	2.2176e-4
chr2	236078148	236078248	1068403	0	+	0.52	(0.485,0.523]	chr2	115777	57	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000418654.1:ENST00000466575.5:ENST00000453371.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	297	2	7.54603	7.58521	7.62439	5.44941e-4	7.22501e-6	0.0136434	4.09005e-4
chr3	51663915	51664014	1472179	0	+	0.454545	(0.45,0.485]	chr3	157989	6	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	0	308	2	7.14323	7.584955000000001	8.02668	0.00147887	2.65779e-6	0.023604	2.014e-4
chr19	6229674	6229772	7321308	0	-	0.581633	(0.58,1]	chr19	756087	22	INTRON	INTRON	MLLT1	ENSG00000130382.9	ENST00000252674.9	protein_coding	protein_coding	protein_coding	protein_coding	0	286	2	7.51411	7.584605	7.6551	2.03828e-4	1.93727e-6	0.0080616	1.62841e-4
chr4	869957	870041	2178292	0	-	0.52381	(0.523,0.58]	chr4	220581	1	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	300	2	7.2578	7.583795	7.90979	9.82792e-4	2.64492e-6	0.0187972	2.01088e-4
chr9	129609876	129609976	4250929	0	+	0.6	(0.58,1]	chr9	404743	3	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	0	303	2	7.18679	7.583550000000001	7.98031	6.7909e-5	1.00244e-5	0.00459677	5.13591e-4
chr21	37383805	37383905	7619139	0	+	0.38	(0.36,0.39]	chr21	796015	83	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	0	306	2	7.45035	7.583515	7.71668	6.59626e-4	2.63375e-5	0.0150896	0.00102154
chr22	50233926	50234026	7827200	0	-	0.58	(0.523,0.58]	chr22	821199	4	SS3_PROX	SS3_PROX:INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	296	2	7.46905	7.582835	7.69662	6.43551e-4	5.30976e-6	0.0148938	3.28939e-4
chr20	64270193	64270292	7511214	0	+	0.646465	(0.58,1]	chr20	783907	18	INTRON	INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609818.1	protein_coding	protein_coding	protein_coding	protein_coding	1	753	2	6.70366	7.581525000000001	8.45939	1.20542e-5	1.02735e-7	0.00201743	2.3668e-5
chr14	91221151	91221248	5899568	0	+	0.525773	(0.523,0.58]	chr14	576435	5	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	298	2	7.48016	7.57958	7.679	4.19964e-4	1.0673e-5	0.011772	5.39197e-4
chr12	122093262	122093362	5343521	0	+	0.5	(0.485,0.523]	chr12	521864	136	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	314	2	7.1677	7.5795650000000006	7.99143	2.17771e-4	3.05856e-5	0.00834646	0.00114404
chr2	164682966	164683066	1297929	0	-	0.44	(0.419,0.45]	chr2	139182	29	UTR3	UTR3:EXON_MRNA:INTRON	COBLL1	ENSG00000082438.18	ENST00000495084.1:ENST00000652658.2:ENST00000375458.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	304	2	7.57799	7.578749999999999	7.57951	0.00108124	2.18502e-5	0.0198009	8.98326e-4
chr10	127262222	127262322	4610549	0	+	0.5	(0.485,0.523]	chr10	440799	44	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2:ENST00000484400.5:ENST00000464466.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	332	2	6.77657	7.578480000000001	8.38039	0.00248912	6.0461e-7	0.0315244	7.52596e-5
chrX	2234424	2234524	7966182	0	-	0.52	(0.485,0.523]	chrX	834328	128	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11	protein_coding	protein_coding	protein_coding	protein_coding	0	318	2	7.11151	7.578334999999999	8.04516	1.94674e-4	3.63944e-5	0.00785001	0.00129856
chr12	132784707	132784807	5540301	0	-	0.58	(0.523,0.58]	chr12	546787	4	SS3_PROX	SS3_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	299	2	7.43498	7.577920000000001	7.72086	3.85446e-4	1.23313e-5	0.0112847	5.95111e-4
chr16	67967359	67967456	6610225	0	-	0.515464	(0.485,0.523]	chr16	661575	6	INTRON	INTRON	SLC12A4	ENSG00000124067.17	ENST00000422611.6:ENST00000316341.8:ENST00000572037.5:ENST00000570802.5:ENST00000576616.5:ENST00000573023.6:ENST00000576377.1:ENST00000571299.5:ENST00000572010.5:ENST00000576462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	295	2	7.47928	7.5765	7.67372	6.23933e-4	6.16462e-6	0.0146683	3.65322e-4
chr22	32805018	32805118	7717659	0	+	0.56	(0.523,0.58]	chr22	807776	25	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	0	344	2	6.84845	7.575995	8.30354	1.14562e-4	7.65992e-5	0.00596205	0.00224403
chr16	50621001	50621101	6452138	0	+	0.47	(0.45,0.485]	chr16	639912	50	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	1	658	2	6.74499	7.575715	8.40644	1.1891e-4	6.30513e-7	0.00606093	7.76905e-5
chr11	96243095	96243195	5112567	0	-	0.38	(0.36,0.39]	chr11	496566	1492	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	0	326	2	7.07431	7.575105000000001	8.0759	3.30095e-4	7.87092e-5	0.0103581	0.00228819
chr2	134145178	134145278	895682	0	+	0.5	(0.485,0.523]	chr2	101196	176	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	295	2	7.54603	7.5751	7.60417	5.44941e-4	7.70941e-6	0.0136434	4.27315e-4
chr2	239280677	239280777	1391515	0	-	0.49	(0.485,0.523]	chr2	148740	291	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	642	2	6.68839	7.574435	8.46048	8.11074e-5	5.8239e-7	0.00499693	7.33209e-5
chr2	240520733	240520833	1394642	0	-	0.58	(0.523,0.58]	chr2	149019	2	SS3_PROX	SS3_PROX:INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000405523.7	protein_coding	protein_coding	protein_coding	protein_coding	0	314	2	6.95516	7.574425	8.19369	0.00178078	1.03241e-6	0.0262315	1.06505e-4
chr10	103836117	103836217	4758466	0	-	0.4	(0.39,0.419]	chr10	454819	344	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	0	303	2	7.4825	7.574	7.6655	7.53311e-4	2.42315e-5	0.0162173	9.65272e-4
chr16	53151935	53152035	6455064	0	+	0.47	(0.45,0.485]	chr16	640120	203	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000565832.5:ENST00000564845.5:ENST00000563410.1	protein_coding	protein_coding	protein_coding	protein_coding	0	300	2	7.45197	7.57392	7.69587	5.02031e-4	1.6284e-5	0.0129939	7.25583e-4
chr7	4697660	4697760	3309495	0	+	0.35	(0.33,0.36]	chr7	320808	144	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	0	332	2	6.98111	7.573695000000001	8.16628	2.07417e-4	8.52689e-5	0.00813372	0.00243134
chr6	167844195	167844295	3073513	0	+	0.5	(0.485,0.523]	chr6	298792	159	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000400825.8:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400824.8:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	301	2	7.36081	7.57333	7.78585	3.335e-4	1.67181e-5	0.0104047	7.38685e-4
chr2	239158953	239159052	1390286	0	-	0.535354	(0.523,0.58]	chr2	148698	18	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	294	2	7.50783	7.572925	7.63802	5.95022e-4	6.42092e-6	0.0143364	3.76263e-4
chr12	132951957	132952056	5542051	0	-	0.444444	(0.419,0.45]	chr12	547064	33	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	308	2	7.20503	7.572515	7.94	0.00212618	7.48811e-6	0.0289767	4.19328e-4
chr4	17628250	17628350	2017160	0	+	0.38	(0.36,0.39]	chr4	206143	27	UTR3	UTR3:EXON_MRNA	MED28	ENSG00000118579.13	ENST00000237380.12	protein_coding	protein_coding	protein_coding	protein_coding	0	303	2	7.46134	7.572505	7.68367	7.02479e-4	2.54957e-5	0.015621	0.00100208
chr10	100970801	100970895	4569830	0	+	0.468085	(0.45,0.485]	chr10	436226	5	INTRON	INTRON	SEMA4G	ENSG00000095539.15	ENST00000519649.5:ENST00000521006.5:ENST00000518124.5:ENST00000518244.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	299	2	7.28315	7.571235	7.85932	0.00112952	4.53465e-6	0.0202727	2.94386e-4
chr7	100580376	100580475	3654720	0	-	0.454545	(0.45,0.485]	chr7	352212	17	EXON_MRNA	EXON_MRNA:INTRON	LRCH4	ENSG00000077454.17	ENST00000310300.11:ENST00000467201.5:ENST00000497245.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	324	2	7.03968	7.5702300000000005	8.10078	2.22233e-4	5.71642e-5	0.00843406	0.00180869
chr4	75984725	75984824	2252977	0	-	0.393939	(0.39,0.419]	chr4	227518	23	INTRON	INTRON	SDAD1	ENSG00000198301.12	ENST00000395710.5:ENST00000356260.10:ENST00000395711.8:ENST00000503411.5:ENST00000504975.1:ENST00000514710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	300	2	7.52363	7.569979999999999	7.61633	9.84308e-4	1.62815e-5	0.0188182	7.25583e-4
chr3	13200026	13200126	1691142	0	-	0.51	(0.485,0.523]	chr3	176566	355	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	295	2	7.33574	7.569625	7.80351	8.33022e-4	4.05085e-6	0.0171427	2.73332e-4
chr2	102112271	102112371	863508	0	+	0.5	(0.485,0.523]	chr2	97787	70	INTRON	INTRON	IL1R1	ENSG00000115594.12	ENST00000452403.5:ENST00000409929.5:ENST00000424272.5:ENST00000409589.5:ENST00000409329.5	protein_coding	protein_coding	protein_coding	protein_coding	1	637	2	6.51884	7.569155	8.61947	5.77963e-5	1.03006e-6	0.00421984	1.06505e-4
chr7	1070783	1070883	3526935	0	-	0.58	(0.523,0.58]	chr7	340585	156	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	769	2	6.07805	7.56889	9.05973	1.45308e-4	5.46932e-8	0.0067363	1.57827e-5
chr17	49666431	49666530	6925661	0	-	0.40404	(0.39,0.419]	chr17	705495	190	INTRON	INTRON	SPOP	ENSG00000121067.19	ENST00000393328.6:ENST00000504102.6:ENST00000347630.6:ENST00000665825.1:ENST00000514121.6:ENST00000659760.1:ENST00000509079.6:ENST00000671445.1:ENST00000513080.6:ENST00000505581.5:ENST00000506399.5:ENST00000507970.5:ENST00000515508.6:ENST00000504212.5:ENST00000508805.5:ENST00000451526.6:ENST00000502385.1:ENST00000509765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	303	2	7.4387	7.568795	7.69889	7.07115e-4	2.75778e-5	0.0156772	0.00106056
chr1	165900698	165900798	263216	0	+	0.53	(0.523,0.58]	chr1	31081	23	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1:ENST00000462329.5:ENST00000464197.5:ENST00000469256.6:ENST00000470820.1:ENST00000463772.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	294	2	7.54539	7.56842	7.59145	5.0213e-4	8.65732e-6	0.0129939	4.62898e-4
chr2	3294602	3294702	1081053	0	-	0.6	(0.58,1]	chr2	117633	119	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	286	2	7.44581	7.567755	7.6897	1.35209e-4	4.06787e-6	0.00645702	2.73821e-4
chr17	65538102	65538202	6950639	0	-	0.61	(0.58,1]	chr17	709206	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AXIN2	ENSG00000168646.14	ENST00000307078.10:ENST00000618960.4:ENST00000375702.5	protein_coding	protein_coding	protein_coding	protein_coding	1	598	2	6.35118	7.5671800000000005	8.78318	9.66154e-6	6.4571e-7	0.00184763	7.8926e-5
chr19	35001444	35001544	7244872	0	+	0.46	(0.45,0.485]	chr19	742062	2	SS5_PROX	SS5_PROX:INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	323	2	7.03968	7.567069999999999	8.09446	2.25105e-4	5.71642e-5	0.00847971	0.00180869
chr17	76547598	76547696	6977081	0	-	0.5	(0.485,0.523]	chr17	712268	13	INTRON	INTRON	CYGB:ENSG00000267546	ENSG00000161544.10:ENSG00000267546.2	ENST00000589145.1:ENST00000589963.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	644	2	6.77592	7.566985000000001	8.35805	1.00792e-4	4.33304e-7	0.00560072	6.04918e-5
chr7	92371907	92372007	3415414	0	+	0.54	(0.523,0.58]	chr7	329883	3	SS5_PROX	SS5_PROX:INTRON	ANKIB1	ENSG00000001629.10	ENST00000265742.8:ENST00000422095.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	299	2	7.36443	7.566985	7.76954	3.48766e-4	1.54352e-5	0.0106878	6.98728e-4
chr4	3179528	3179625	2003663	0	+	0.56701	(0.523,0.58]	chr4	204462	7	INTRON	INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000680291.1:ENST00000510626.5:ENST00000509043.1:ENST00000513326.5:ENST00000513639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	293	2	7.53625	7.56692	7.59759	5.6173e-4	7.31734e-6	0.0138488	4.11658e-4
chr16	81549780	81549880	6508791	0	+	0.51	(0.485,0.523]	chr16	645911	539	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	297	2	7.41983	7.566425000000001	7.71302	3.87414e-4	1.3874e-5	0.0113274	6.45948e-4
chr17	17096267	17096367	6687403	0	+	0.54	(0.523,0.58]	chr17	671149	1	SS3_PROX	SS3_PROX:INTRON	MPRIP	ENSG00000133030.22	ENST00000651222.2:ENST00000577514.5:ENST00000395811.9:ENST00000395807.2:ENST00000341712.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	305	2	7.2386	7.56523	7.89186	2.70954e-4	2.29668e-5	0.00934214	9.29664e-4
chrX	48942105	48942204	8040896	0	-	0.474747	(0.45,0.485]	chrX	838808	54	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	295	2	7.50897	7.5649750000000004	7.62098	7.26773e-4	9.62e-6	0.0158761	4.98808e-4
chr22	50235221	50235320	7827213	0	-	0.565657	(0.523,0.58]	chr22	821200	13	INTRON	INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	293	2	7.36729	7.564705	7.76212	7.89787e-4	4.29035e-6	0.0167041	2.82813e-4
chr2	232900069	232900168	1383839	0	-	0.434343	(0.419,0.45]	chr2	147952	48	INTRON	INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000416114.3:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	308	2	7.15805	7.564475	7.9709	0.0023114	6.82696e-6	0.0302623	3.94278e-4
chr2	3296898	3296998	1081076	0	-	0.48	(0.45,0.485]	chr2	117633	142	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	295	2	7.42082	7.564415	7.70801	8.64002e-4	7.31909e-6	0.0175214	4.11658e-4
chr1	43597247	43597347	107423	0	+	0.36	(0.33,0.36]	chr1	13241	1	SS3_PROX	SS3_PROX:INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	0	301	2	7.22426	7.56419	7.90412	0.00133036	5.28922e-6	0.0222846	3.28393e-4
chr19	7153027	7153127	7323797	0	-	0.52	(0.485,0.523]	chr19	756779	1	SS3_PROX	SS3_PROX:INTRON	INSR	ENSG00000171105.14	ENST00000341500.9:ENST00000302850.10:ENST00000598216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	316	2	7.08258	7.56387	8.04516	1.94674e-4	3.97904e-5	0.00785001	0.00138788
chr2	239280478	239280578	1391513	0	-	0.55	(0.523,0.58]	chr2	148740	289	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	292	2	7.44927	7.5633099999999995	7.67735	6.69765e-4	5.65256e-6	0.0152294	3.44583e-4
chr13	113012265	113012365	5655746	0	+	0.59	(0.58,1]	chr13	555138	99	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	291	2	7.29604	7.56328	7.83052	9.69786e-5	6.86847e-6	0.00549965	3.9491e-4
chr3	66324157	66324257	1497495	0	+	0.49	(0.485,0.523]	chr3	160479	183	INTRON	INTRON	SLC25A26	ENSG00000144741.19	ENST00000676754.1:ENST00000686511.1:ENST00000690634.1:ENST00000689520.1:ENST00000686445.1:ENST00000691582.1:ENST00000691166.1:ENST00000691461.1:ENST00000354883.11:ENST00000693385.1:ENST00000688696.1:ENST00000691525.1:ENST00000690560.1:ENST00000336733.10:ENST00000464350.6:ENST00000691603.1:ENST00000483224.5:ENST00000413054.5:ENST00000484768.1:ENST00000685460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	297	2	7.39651	7.563015	7.72952	3.74499e-4	1.49363e-5	0.0111071	6.82859e-4
chr7	94936607	94936707	3419075	0	+	0.41	(0.39,0.419]	chr7	330364	247	INTRON	INTRON	PPP1R9A	ENSG00000158528.12	ENST00000433360.6:ENST00000340694.8:ENST00000424654.5:ENST00000433881.5:ENST00000456331.6:ENST00000289495.7	protein_coding	protein_coding	protein_coding	protein_coding	0	299	2	7.5561	7.56279	7.56948	9.03031e-4	1.94807e-5	0.0179056	8.25524e-4
chr14	24918492	24918592	5943311	0	-	0.31	(0.29,0.33]	chr14	582927	393	INTRON	INTRON	STXBP6	ENSG00000168952.16	ENST00000323944.10:ENST00000396700.5:ENST00000419632.6:ENST00000546511.5:ENST00000550887.5:ENST00000548182.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	307	2	7.18955	7.56249	7.93543	2.03127e-4	3.15128e-5	0.0080565500000000009	0.00116717
chr4	869859	869957	2178291	0	-	0.510204	(0.485,0.523]	chr4	220580	13	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	292	2	7.46949	7.56184	7.65419	6.36415e-4	6.56483e-6	0.0148327	3.8256e-4
chr2	239084839	239084936	1389523	0	-	0.525773	(0.523,0.58]	chr2	148605	2	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000487617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	292	2	7.39858	7.56182	7.72506	7.41711e-4	4.84091e-6	0.0160724	3.08192e-4
chr12	132784607	132784707	5540300	0	-	0.47	(0.45,0.485]	chr12	546787	3	SS3_PROX	SS3_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	295	2	7.53895	7.561	7.58305	6.27968e-4	1.24295e-5	0.0147128	5.98526e-4
chr8	140552627	140552726	4088783	0	-	0.555556	(0.523,0.58]	chr8	388568	8	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	299	2	7.32782	7.56055	7.79328	3.32134e-4	1.73343e-5	0.0103819	7.59912e-4
chr20	17981585	17981685	7441405	0	+	0.54	(0.523,0.58]	chr20	774379	53	INTRON	INTRON	MGME1	ENSG00000125871.14	ENST00000377710.10:ENST00000377709.1:ENST00000377704.4:ENST00000463219.1:ENST00000467391.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	306	2	7.19861	7.55975	7.92089	2.55138e-4	2.60365e-5	0.00904796	0.00101533
chr3	71413159	71413259	1829580	0	-	0.48	(0.45,0.485]	chr3	188242	525	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000649145.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	294	2	7.42082	7.55971	7.6986	8.64002e-4	7.5393e-6	0.0175214	4.21223e-4
chr3	172302775	172302875	1630110	0	+	0.39	(0.36,0.39]	chr3	170608	36	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	1846	2	7.5417	7.558854999999999	7.57601	1.20497e-5	7.33298e-8	0.00201743	1.93554e-5
chr17	7109188	7109288	6847725	0	-	0.65	(0.58,1]	chr17	693422	3	SS3_PROX	SS3_PROX:INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	1294	2	5.32935	7.5584999999999996	9.78765	7.89669e-7	5.6778e-7	7.94453e-4	7.21012e-5
chr15	22557991	22558090	6059854	0	+	0.515152	(0.485,0.523]	chr15	594971	5	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	295	2	7.41983	7.5580750000000005	7.69632	4.00919e-4	1.3874e-5	0.0114335	6.45948e-4
chr21	34748566	34748666	7615873	0	+	0.49	(0.485,0.523]	chr21	795408	3	INTRON	INTRON	LINC01426	ENSG00000234380.2	ENST00000420877.1	lncRNA	lncRNA	lncRNA	lncRNA	0	332	2	6.7116	7.557784999999999	8.40397	0.00281636	5.58782e-7	0.0336649	7.12027e-5
chr13	113011766	113011866	5655741	0	+	0.67	(0.58,1]	chr13	555138	94	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	282	2	7.51524	7.557600000000001	7.59996	1.66865e-4	3.18434e-6	0.00722822	2.29035e-4
chr17	356496	356596	6821858	0	-	0.53	(0.523,0.58]	chr17	689641	35	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	0	302	2	7.06325	7.55725	8.05125	0.0014427	1.65795e-6	0.023287	1.46243e-4
chr16	89430255	89430355	6661136	0	-	0.54	(0.523,0.58]	chr16	666747	115	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	1053	2	6.28172	7.557185	8.83265	3.71246e-5	1.88052e-7	0.00336682	3.51628e-5
chr2	233165323	233165423	1058279	0	+	0.43	(0.419,0.45]	chr2	115120	5	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493078.1:ENST00000472517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	299	2	7.525	7.556495	7.58799	0.00119436	2.122e-5	0.020937	8.76062e-4
chr13	20497693	20497793	5662817	0	-	0.42	(0.419,0.45]	chr13	556208	78	INTRON	INTRON	CRYL1	ENSG00000165475.15	ENST00000643035.1:ENST00000644593.1:ENST00000298248.12:ENST00000644872.1:ENST00000382812.5:ENST00000643750.1:ENST00000644153.1:ENST00000643887.1:ENST00000644167.1:ENST00000646414.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	301	2	7.46314	7.556125	7.64911	9.51747e-4	3.05349e-5	0.0184489	0.00114367
chr17	57463910	57464010	6761851	0	+	0.41	(0.39,0.419]	chr17	682137	188	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	297	2	7.46662	7.55607	7.64552	0.00109526	1.49216e-5	0.0199429	6.82655e-4
chr1	17675084	17675184	54962	0	+	0.58	(0.523,0.58]	chr1	5603	101	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	303	2	7.2254	7.554955	7.88451	2.75108e-4	2.39394e-5	0.00943643	9.57041e-4
chr16	1735066	1735166	6371289	0	+	0.6	(0.58,1]	chr16	628850	1	PRIMIRNA	PRIMIRNA:INTRON	MAPK8IP3:MIR3177	ENSG00000138834.15:ENSG00000265820.1	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1:ENST00000578255.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:processed_transcript:primary_miRNA	0	281	2	7.53766	7.554785	7.57191	1.78161e-4	2.94146e-6	0.00750602	2.17062e-4
chr16	75236072	75236158	6644468	0	-	0.546512	(0.523,0.58]	chr16	664410	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000566982.1:ENST00000563038.5:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10:ENST00000569340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	628	2	6.53474	7.554399999999999	8.57406	6.45528e-5	9.12666e-7	0.00446482	9.84472e-5
chr2	3296299	3296399	1081070	0	-	0.57	(0.523,0.58]	chr2	117633	136	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	293	2	7.44641	7.5541599999999995	7.66191	4.34904e-4	1.18895e-5	0.0119405	5.81984e-4
chr12	122094362	122094462	5343532	0	+	0.54	(0.523,0.58]	chr12	521864	147	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	309	2	7.12939	7.553315	7.97724	2.26961e-4	3.23178e-5	0.00851514	0.00118877
chr18	74916319	74916419	7092445	0	+	0.53	(0.523,0.58]	chr18	722466	105	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	296	2	7.35233	7.5529150000000005	7.7535	3.60464e-4	1.60393e-5	0.0108631	7.1852e-4
chr1	1030224	1030324	1017	0	+	0.54	(0.523,0.58]	chr1	166	74	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	1	628	2	6.45922	7.55229	8.64536	5.54455e-5	1.17729e-6	0.00413282	1.16238e-4
chr16	83916782	83916882	6513092	0	+	0.6	(0.58,1]	chr16	646141	14	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	298	2	6.92818	7.5514399999999995	8.1747	7.72338e-4	2.9449e-7	0.0164417	4.66588e-5
chr4	23795431	23795528	2208642	0	-	0.505155	(0.485,0.523]	chr4	223244	36	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PPARGC1A	ENSG00000109819.9	ENST00000509702.5:ENST00000264867.7:ENST00000613098.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	2250	2	7.19185	7.5509249999999994	7.91	2.67497e-6	2.04398e-8	0.00111692	8.35226e-6
chr22	38818549	38818648	7812846	0	-	0.525253	(0.523,0.58]	chr22	819285	2	UTR3	UTR3:EXON_MRNA	NPTXR	ENSG00000221890.6	ENST00000333039.4	protein_coding	protein_coding	protein_coding	protein_coding	0	321	2	6.9801	7.5509200000000005	8.12174	1.67878e-4	5.12704e-5	0.00724399	0.00167326
chr7	134293063	134293162	3715895	0	-	0.494949	(0.485,0.523]	chr7	356904	39	UTR3	UTR3:EXON_MRNA	SLC35B4	ENSG00000205060.11	ENST00000378509.9	protein_coding	protein_coding	protein_coding	protein_coding	0	290	2	7.52727	7.55029	7.57331	5.66104e-4	8.51093e-6	0.0138751	4.57175e-4
chr3	136299452	136299550	1574573	0	+	0.336735	(0.33,0.36]	chr3	167002	10	INTRON	INTRON	PCCB	ENSG00000114054.14	ENST00000251654.9:ENST00000490504.5:ENST00000483687.5:ENST00000468777.5:ENST00000462637.5:ENST00000466072.5:ENST00000484181.5:ENST00000482086.5:ENST00000471595.5:ENST00000469217.5:ENST00000478469.5:ENST00000474833.5:ENST00000475214.5:ENST00000473073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	298	2	7.21265	7.550225	7.8878	0.0013602	5.56417e-6	0.0224846	3.40678e-4
chr4	128859135	128859233	2132079	0	+	0.479592	(0.45,0.485]	chr4	216567	13	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	0	292	2	7.42082	7.5502	7.67958	8.64002e-4	8.00408e-6	0.0175214	4.37868e-4
chr2	111421709	111421809	1252853	0	-	0.48	(0.45,0.485]	chr2	134896	434	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1	lncRNA	lncRNA	lncRNA	lncRNA	0	296	2	7.21489	7.54967	7.88445	0.00128871	4.18637e-6	0.0219081	2.79002e-4
chr1	950340	950435	379864	0	-	0.505263	(0.485,0.523]	chr1	42700	14	INTRON	INTRON	NOC2L	ENSG00000188976.11	ENST00000327044.7:ENST00000477976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	291	2	7.30303	7.548825	7.79462	8.89361e-4	4.16953e-6	0.0177608	2.78321e-4
chr13	113012565	113012664	5655749	0	+	0.636364	(0.58,1]	chr13	555138	102	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	288	2	7.28283	7.5487400000000004	7.81465	1.00693e-4	7.19115e-6	0.00560072	4.08425e-4
chr20	44360241	44360341	7482510	0	+	0.41	(0.39,0.419]	chr20	779618	40	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5	protein_coding	protein_coding	protein_coding	protein_coding	1	661	2	6.3912	7.54743	8.70366	1.00366e-4	3.16748e-6	0.00560072	2.28409e-4
chr4	3362499	3362598	2005061	0	+	0.565657	(0.523,0.58]	chr4	204663	191	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	289	2	7.52684	7.54667	7.5665	5.7255e-4	8.08882e-6	0.0140109	4.41353e-4
chr19	4392482	4392580	7313307	0	-	0.520408	(0.485,0.523]	chr19	754735	20	INTRON	INTRON	SH3GL1	ENSG00000141985.9	ENST00000269886.7:ENST00000598564.5:ENST00000417295.6:ENST00000598219.1	protein_coding	protein_coding	protein_coding	protein_coding	1	661	2	6.04852	7.54547	9.04242	2.3277e-5	4.90697e-6	0.00277911	3.11791e-4
chr12	122093062	122093162	5343519	0	+	0.51	(0.485,0.523]	chr12	521864	134	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	296	2	7.31179	7.54486	7.77793	3.38985e-4	1.95061e-5	0.0105406	8.25524e-4
chr21	46403081	46403180	7633010	0	+	0.565657	(0.523,0.58]	chr21	798231	2	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5	protein_coding	protein_coding	protein_coding	protein_coding	0	293	2	7.17589	7.54284	7.90979	0.00115604	2.64492e-6	0.0205679	2.01088e-4
chr21	45453423	45453523	7630797	0	+	0.58	(0.523,0.58]	chr21	797656	476	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	295	2	7.12691	7.542705	7.9585	0.00127326	2.25287e-6	0.0217367	1.80805e-4
chr15	60542309	60542409	6284942	0	-	0.45	(0.419,0.45]	chr15	619503	101	INTRON	INTRON	RORA	ENSG00000069667.16	ENST00000335670.11:ENST00000261523.9:ENST00000309157.8:ENST00000449337.6:ENST00000551975.5:ENST00000560004.5:ENST00000559343.1:ENST00000558234.1:ENST00000557822.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	1201	2	6.13046	7.5415399999999995	8.95262	1.08632e-4	3.39566e-7	0.00582254	5.1331e-5
chr2	120277914	120278014	887951	0	+	0.45	(0.419,0.45]	chr2	100428	238	INTRON	INTRON	RALB	ENSG00000144118.14	ENST00000447591.5:ENST00000420510.5:ENST00000431732.5:ENST00000272519.10:ENST00000631312.2:ENST00000470417.1:ENST00000412383.5:ENST00000449649.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	311	2	6.99386	7.5410699999999995	8.08828	0.00308705	4.79902e-6	0.0354967	3.06805e-4
chr7	73598664	73598754	3602843	0	-	0.466667	(0.45,0.485]	chr7	347628	6	INTRON	INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	636	2	6.54397	7.5409749999999995	8.53798	9.06463e-5	1.22083e-6	0.00527821	1.19067e-4
chr15	28653277	28653376	6068891	0	+	0.494949	(0.485,0.523]	chr15	596168	13	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	0	288	2	7.50826	7.540785	7.57331	5.88357e-4	8.51093e-6	0.0142143	4.57175e-4
chr17	72557823	72557923	6963889	0	-	0.53	(0.523,0.58]	chr17	710389	234	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	3	2340	2	6.24878	7.54071	8.83264	3.78574e-5	3.12616e-10	0.0034159	6.32563e-7
chr22	19909685	19909784	7765141	0	-	0.565657	(0.523,0.58]	chr22	813988	103	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	295	2	7.30289	7.540195	7.7775	3.43103e-4	1.87561e-5	0.0105984	8.04567e-4
chr19	53521705	53521799	7290497	0	+	0.659574	(0.58,1]	chr19	750312	9	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ZNF331	ENSG00000130844.19	ENST00000647573.1:ENST00000648236.1:ENST00000513929.6:ENST00000253144.13:ENST00000649326.1:ENST00000650177.1:ENST00000649780.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	316	2	6.88843	7.540055	8.19168	4.08893e-5	2.76213e-5	0.00354247	0.00106056
chr15	28216996	28217095	6207141	0	-	0.434343	(0.419,0.45]	chr15	611111	8	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	0	298	2	7.26169	7.539759999999999	7.81783	0.00192168	1.07751e-5	0.0274718	5.43271e-4
chr2	86153259	86153359	1212829	0	-	0.35	(0.33,0.36]	chr2	130650	3	SS5_PROX	SS5_PROX:INTRON	IMMT	ENSG00000132305.22	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6	protein_coding	protein_coding	protein_coding	protein_coding	0	292	2	7.34609	7.539	7.73191	0.00105263	9.00621e-6	0.0194688	4.77599e-4
chr1	9295193	9295293	19606	0	+	0.54	(0.523,0.58]	chr1	2205	2	INTRON	INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11:ENST00000450402.1	protein_coding	protein_coding	protein_coding	protein_coding	0	287	2	7.40886	7.53824	7.66762	7.2654e-4	5.83386e-6	0.0158761	3.51962e-4
chr11	61272435	61272522	5041300	0	-	0.37931	(0.36,0.39]	chr11	488756	3	INTRON	INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10:ENST00000535710.1:ENST00000398808.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	300	2	7.31146	7.5381350000000005	7.76481	6.01643e-4	3.96143e-5	0.0143833	0.00138542
chr1	61149426	61149526	146776	0	+	0.35	(0.33,0.36]	chr1	17147	165	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	291	2	7.47795	7.537884999999999	7.59782	8.15069e-4	1.35786e-5	0.016997	6.38969e-4
chr3	160501603	160501703	1951404	0	-	0.45	(0.419,0.45]	chr3	198362	67	UTR3	UTR3:EXON_MRNA	KPNA4	ENSG00000186432.10	ENST00000334256.9:ENST00000676866.1:ENST00000676799.1:ENST00000678630.1:ENST00000676958.1:ENST00000678020.1:ENST00000678765.1:ENST00000678839.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	306	2	7.05924	7.53764	8.01604	0.00275242	5.96295e-6	0.0332418	3.5765e-4
chr16	82036288	82036388	6510469	0	+	0.49	(0.485,0.523]	chr16	646054	2	INTRON	INTRON	HSD17B2	ENSG00000086696.11	ENST00000563491.5:ENST00000199936.9:ENST00000566213.1:ENST00000569351.2	protein_coding	protein_coding	protein_coding	protein_coding	0	301	2	7.18141	7.536849999999999	7.89229	2.67609e-4	2.93111e-5	0.00927457	0.00110673
chr1	12583353	12583453	402436	0	-	0.55	(0.523,0.58]	chr1	46222	23	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	294	2	7.30289	7.536215	7.76954	3.48766e-4	1.87561e-5	0.0106878	8.04567e-4
chr15	98959937	98960037	6196477	0	+	0.43	(0.419,0.45]	chr15	609806	26	UTR3	UTR3:EXON_MRNA	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1	protein_coding	protein_coding	protein_coding	protein_coding	5	1450	2	4.89938	7.5354399999999995	10.1715	1.95375e-5	7.40727e-6	0.00163857	8.26094e-4
chr9	135838560	135838660	4431132	0	-	0.49	(0.485,0.523]	chr9	423507	106	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	292	2	7.16424	7.5352	7.90616	0.0011719	2.89951e-6	0.0206836	2.14994e-4
chr2	61239271	61239371	1155316	0	-	0.48	(0.45,0.485]	chr2	126540	25	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000463046.5:ENST00000472706.5:ENST00000453734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	289	2	7.49944	7.5348500000000005	7.57026	7.40531e-4	1.12733e-5	0.0160724	5.59324e-4
chr11	73051845	73051945	5073073	0	-	0.46	(0.45,0.485]	chr11	493647	356	INTRON	INTRON	FCHSD2	ENSG00000137478.15	ENST00000409418.9:ENST00000311172.11:ENST00000409314.5:ENST00000458644.6:ENST00000409853.5:ENST00000422375.1	protein_coding	protein_coding	protein_coding	protein_coding	1	633	2	6.52179	7.534525	8.54726	8.89225e-5	1.31278e-6	0.00523252	1.2535e-4
chr6	13590785	13590881	2855855	0	+	0.427083	(0.419,0.45]	chr6	279046	14	INTRON	INTRON	SIRT5	ENSG00000124523.17	ENST00000680432.1:ENST00000681012.1:ENST00000397350.7:ENST00000680442.1:ENST00000680754.1:ENST00000679658.1:ENST00000681243.1:ENST00000680747.1:ENST00000681818.1:ENST00000680402.1:ENST00000679663.1:ENST00000379250.10:ENST00000680852.1:ENST00000679922.1:ENST00000681231.1:ENST00000359782.8:ENST00000606117.2:ENST00000379262.8:ENST00000681905.1:ENST00000680937.1:ENST00000680151.1:ENST00000680707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	294	2	7.43919	7.5332550000000005	7.62732	0.00139594	1.89098e-5	0.0228423	8.09334e-4
chr9	134340133	134340233	4260824	0	+	0.62	(0.58,1]	chr9	406311	131	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	304	2	6.98948	7.53305	8.07662	5.39281e-5	1.96603e-5	0.00407077	8.29491e-4
chr3	197291245	197291345	1991391	0	-	0.43	(0.419,0.45]	chr3	202718	80	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000661453.1:ENST00000664564.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000659716.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000666007.1:ENST00000661229.1:ENST00000661013.1:ENST00000436682.6:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000456699.6:ENST00000392380.6:ENST00000485409.5:ENST00000486877.1:ENST00000412364.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	294	2	7.4194	7.53299	7.64658	0.00144685	1.78696e-5	0.023316	7.77694e-4
chr6	2834212	2834312	3085361	0	-	0.5	(0.485,0.523]	chr6	299536	2	SS3_PROX	SS3_PROX:INTRON	SERPINB1	ENSG00000021355.13	ENST00000380739.6:ENST00000468511.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	291	2	7.36081	7.532755	7.7047	3.94091e-4	1.67181e-5	0.0113656	7.38685e-4
chr9	134368876	134368975	4261112	0	+	0.565657	(0.523,0.58]	chr9	406311	419	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	311	2	7.02653	7.53232	8.03811	1.99936e-4	4.44459e-5	0.00798199	0.00150854
chr3	13374173	13374273	1692590	0	-	0.49	(0.485,0.523]	chr3	176729	3	SS3_PROX	SS3_PROX:INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000420141.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	286	2	7.42964	7.5320149999999995	7.63439	6.89746e-4	6.99649e-6	0.0154729	4.00488e-4
chr12	122093362	122093462	5343522	0	+	0.49	(0.485,0.523]	chr12	521864	137	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	288	2	7.45412	7.531969999999999	7.60982	4.78546e-4	1.24448e-5	0.0126479	5.98526e-4
chr21	44025811	44025911	7625806	0	+	0.55	(0.523,0.58]	chr21	796980	129	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	286	2	7.35671	7.531435	7.70616	8.06717e-4	5.14768e-6	0.0168786	3.22346e-4
chr10	75799611	75799711	4524163	0	+	0.48	(0.45,0.485]	chr10	432282	162	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	289	2	7.50694	7.5313300000000005	7.55572	6.62812e-4	1.3731e-5	0.0151276	6.43436e-4
chr12	122093462	122093562	5343523	0	+	0.57	(0.523,0.58]	chr12	521864	138	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	299	2	7.18503	7.53108	7.87713	2.79345e-4	2.7167e-5	0.00949286	0.00104767
chrX	133655435	133655535	8112710	0	-	0.49	(0.485,0.523]	chrX	845480	585	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000692074.1:ENST00000667662.1:ENST00000666017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	2982	2	6.92045	7.530135	8.13982	1.60948e-6	1.33022e-8	9.73457e-4	6.38298e-6
chr9	135837163	135837263	4431118	0	-	0.46	(0.45,0.485]	chr9	423507	92	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	295	2	7.11854	7.52999	7.94144	0.00155043	3.49104e-6	0.0243127	2.45572e-4
chr7	1008849	1008949	3526311	0	-	0.51	(0.485,0.523]	chr7	340566	79	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	286	2	7.35714	7.529835	7.70253	7.98038e-4	5.61759e-6	0.0167692	3.43198e-4
chr16	85400231	85400331	6517073	0	+	0.4	(0.39,0.419]	chr16	646391	409	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	310	2	7.1021	7.528675	7.95525	4.33274e-4	7.34431e-5	0.0119405	0.00217924
chr10	103701109	103701209	4757111	0	-	0.48	(0.45,0.485]	chr10	454791	76	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	290	2	7.41795	7.527085	7.63622	5.6521e-4	1.809e-5	0.0138732	7.83029e-4
chr22	28918380	28918480	7705625	0	+	0.53	(0.523,0.58]	chr22	806321	5	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7:ENST00000402174.5	protein_coding	protein_coding	protein_coding	protein_coding	2	824	2	6.06246	7.52702	8.99158	2.63706e-5	9.12688e-7	0.00292399	9.84472e-5
chr2	175124614	175124713	1321986	0	-	0.444444	(0.419,0.45]	chr2	141182	27	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000435004.6:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	293	2	7.50637	7.526965000000001	7.54756	0.00123559	2.38821e-5	0.0213594	9.56571e-4
chr1	246232923	246233023	703114	0	-	0.45	(0.419,0.45]	chr1	82422	393	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	305	2	7.02037	7.525575	8.03078	0.00294696	5.70487e-6	0.0344907	3.47144e-4
chr1	246233823	246233923	703123	0	-	0.46	(0.45,0.485]	chr1	82422	402	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	310	2	6.86006	7.5250900000000005	8.19012	0.00252685	1.57041e-6	0.031696	1.41191e-4
chr17	7446302	7446397	6676740	0	+	0.494737	(0.485,0.523]	chr17	669643	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CHRNB1	ENSG00000170175.11	ENST00000306071.7:ENST00000572857.5:ENST00000570557.5:ENST00000536404.6:ENST00000576360.1:ENST00000573209.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	342	2	6.71888	7.525075	8.33127	1.19549e-4	1.0667e-4	0.00577026	0.00313373
chr21	43750645	43750745	7624123	0	+	0.5	(0.485,0.523]	chr21	796772	1	SS5_PROX	SS5_PROX:INTRON	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000498040.5:ENST00000481512.5:ENST00000490666.5:ENST00000467908.1:ENST00000343528.10:ENST00000398078.7:ENST00000468392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	296	2	7.20844	7.5242450000000005	7.84005	2.98185e-4	2.69474e-5	0.00982269	0.00104303
chr16	29271613	29271713	6433553	0	+	0.5	(0.485,0.523]	chr16	636745	195	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	302	2	7.11151	7.523565	7.93562	2.44592e-4	3.63944e-5	0.00884339	0.00129856
chr18	76403380	76403480	7179153	0	-	0.53	(0.523,0.58]	chr18	730080	227	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	284	2	7.4592	7.52325	7.5873	6.56487e-4	7.56432e-6	0.0150669	4.21779e-4
chr5	654274	654371	2378826	0	+	0.587629	(0.58,1]	chr5	237653	7	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000499639.2	protein_coding	processed_transcript	protein_coding	processed_transcript	0	276	2	7.24478	7.523015	7.80125	3.78937e-4	1.14692e-6	0.011147	1.13842e-4
chr14	105215479	105215577	6058152	0	-	0.540816	(0.523,0.58]	chr14	594783	22	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000392557.8:ENST00000446501.6:ENST00000635152.1:ENST00000547374.5:ENST00000551787.5:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	284	2	7.46905	7.52299	7.57693	6.43551e-4	7.82132e-6	0.0148938	4.32234e-4
chr10	77825365	77825462	4718601	0	-	0.42268	(0.419,0.45]	chr10	450198	5	INTRON	INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7:ENST00000475613.6:ENST00000424842.5:ENST00000468332.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	294	2	7.43016	7.522444999999999	7.61473	0.00101372	3.35979e-5	0.0191342	0.00122772
chr7	92688619	92688719	3637485	0	-	0.29	[0,0.29]	chr7	350310	167	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000473078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	280	2	7.4513	7.522235	7.59317	1.9888e-4	8.56286e-6	0.00796843	4.59163e-4
chr5	654371	654468	2378827	0	+	0.505155	(0.485,0.523]	chr5	237653	8	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000499639.2	protein_coding	processed_transcript	protein_coding	processed_transcript	0	284	2	7.4497	7.52183	7.59396	6.62378e-4	7.96614e-6	0.0151276	4.36503e-4
chr17	17735953	17736053	6689395	0	+	0.48	(0.45,0.485]	chr17	671344	114	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	286	2	7.37984	7.520075	7.66031	9.36002e-4	8.50368e-6	0.0183069	4.57175e-4
chr17	72529722	72529822	6963604	0	-	0.48	(0.45,0.485]	chr17	710377	28	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	303	2	6.9327	7.5199300000000004	8.10716	0.00220534	2.05223e-6	0.0295736	1.69518e-4
chr17	61246770	61246870	6776693	0	+	0.41	(0.39,0.419]	chr17	683282	10	INTRON	INTRON	BCAS3	ENSG00000141376.23	ENST00000407086.8:ENST00000589222.5:ENST00000390652.9:ENST00000588462.5:ENST00000408905.7:ENST00000588874.5:ENST00000585744.5:ENST00000585979.5:ENST00000587002.1:ENST00000585812.5:ENST00000587294.5:ENST00000592702.5:ENST00000588569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	291	2	7.46077	7.519625	7.57848	8.87861e-4	2.58392e-5	0.0177608	0.0010125
chr16	81627490	81627589	6509572	0	+	0.686869	(0.58,1]	chr16	645926	54	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	280	2	7.29604	7.518515	7.74099	1.19833e-4	6.86847e-6	0.00607292	3.9491e-4
chr10	131957253	131957352	4616600	0	+	0.565657	(0.523,0.58]	chr10	441116	14	UTR3	UTR3:EXON_MRNA	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000470416.5:ENST00000649083.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	291	2	7.26466	7.5171	7.76954	3.48766e-4	2.11593e-5	0.0106878	8.73984e-4
chr9	135837862	135837962	4431125	0	-	0.49	(0.485,0.523]	chr9	423507	99	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	286	2	7.212	7.516565	7.82113	0.00106612	3.82538e-6	0.0196248	2.62442e-4
chr6	170358025	170358125	3076156	0	+	0.57	(0.523,0.58]	chr6	299169	4	SS3_PROX	SS3_PROX:INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	0	283	2	7.33531	7.515965	7.69662	8.42028e-4	5.30976e-6	0.0172456	3.28939e-4
chrX	123638763	123638833	8098453	0	-	0.442857	(0.419,0.45]	chrX	844484	3	SS5_PROX	SS5_PROX:INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	0	292	2	7.45223	7.51587	7.57951	0.00108124	3.15167e-5	0.0198009	0.00116717
chr1	9876814	9876912	398497	0	-	0.479592	(0.45,0.485]	chr1	45374	44	INTRON	INTRON	CTNNBIP1	ENSG00000178585.15	ENST00000377263.6:ENST00000400904.7:ENST00000377258.5:ENST00000377256.1	protein_coding	protein_coding	protein_coding	protein_coding	0	285	2	7.40047	7.51569	7.63091	8.99052e-4	9.3252e-6	0.0178386	4.88957e-4
chr5	176591788	176591886	2596983	0	+	0.5	(0.485,0.523]	chr5	257776	2	SS5_PROX	SS5_PROX:INTRON	CDHR2	ENSG00000074276.11	ENST00000510636.5:ENST00000261944.10:ENST00000506348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	284	2	7.46537	7.5149550000000005	7.56454	5.24802e-4	1.2008e-5	0.0133335	5.85397e-4
chr3	49773987	49774087	1773919	0	-	0.4	(0.39,0.419]	chr3	183906	252	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	304	2	7.12991	7.514405	7.8989	4.82803e-4	6.78033e-5	0.0127255	0.00205103
chr7	47352431	47352531	3587315	0	-	0.55	(0.523,0.58]	chr7	346030	57	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	740	2	5.96032	7.5118849999999995	9.06345	1.8649e-4	5.39987e-8	0.00769604	1.5636e-5
chrX	48465029	48465126	8040338	0	-	0.556701	(0.523,0.58]	chrX	838611	17	INTRON	INTRON	SLC38A5	ENSG00000017483.16	ENST00000595796.5:ENST00000619100.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5:ENST00000416711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	313	2	6.74402	7.511645	8.27927	0.00267018	7.75553e-7	0.0327654	8.87873e-5
chr4	2068394	2068493	1997260	0	+	0.434343	(0.419,0.45]	chr4	203663	44	UTR3	UTR3:EXON_MRNA	NAT8L	ENSG00000185818.8	ENST00000423729.3	protein_coding	protein_coding	protein_coding	protein_coding	0	428	2	6.07002	7.5113199999999996	8.95262	0.0143746	3.39566e-7	0.0821732	5.1331e-5
chr11	70585529	70585629	5060128	0	-	0.47	(0.45,0.485]	chr11	492663	822	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	771	2	6.31719	7.510875	8.70456	1.06649e-4	2.92667e-7	0.00577026	4.65962e-5
chr16	8858174	8858259	6546180	0	-	0.611765	(0.58,1]	chr16	651453	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CARHSP1	ENSG00000153048.11	ENST00000396593.6:ENST00000611932.4:ENST00000618335.4:ENST00000619881.4:ENST00000610831.4:ENST00000614449.4:ENST00000311052.10:ENST00000561530.5:ENST00000567554.5:ENST00000565287.5:ENST00000567908.5:ENST00000570125.5:ENST00000568117.5:ENST00000568968.1:ENST00000563815.5:ENST00000562843.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	273	2	7.45761	7.51002	7.56243	1.82142e-4	3.90231e-6	0.00759001	2.65981e-4
chr16	83917180	83917280	6513096	0	+	0.59	(0.58,1]	chr16	646141	18	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	283	2	6.98601	7.508985	8.03196	6.79156e-4	4.96742e-7	0.0153241	6.61061e-5
chr12	776348	776448	5148863	0	+	0.37	(0.36,0.39]	chr12	500570	217	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	0	322	2	6.89135	7.50863	8.12591	2.9948e-4	1.32362e-4	0.00982269	0.00337119
chr2	138567454	138567552	904554	0	+	0.387755	(0.36,0.39]	chr2	101982	21	INTRON	INTRON	SPOPL	ENSG00000144228.9	ENST00000280098.9:ENST00000420679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	301	2	6.97612	7.508015	8.03991	0.00261876	4.46374e-6	0.0324697	2.90119e-4
chr8	38770093	38770193	3802256	0	+	0.67	(0.58,1]	chr8	365828	123	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	1407	2	7.358	7.507825	7.65765	2.35608e-6	4.70529e-9	0.00111233	3.37707e-6
chr2	3458461	3458561	711017	0	+	0.57	(0.523,0.58]	chr2	83174	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000479955.5:ENST00000497597.5:ENST00000473348.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	619	2	6.21709	7.507479999999999	8.79787	4.00023e-5	2.6488e-6	0.00351956	2.01201e-4
chr7	1939288	1939387	3529617	0	-	0.646465	(0.58,1]	chr7	340962	20	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000450235.5:ENST00000437877.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	272	2	7.27989	7.50739	7.73489	3.49762e-4	1.45603e-6	0.0106878	1.34292e-4
chr18	69463724	69463823	7083805	0	+	0.434343	(0.419,0.45]	chr18	722102	621	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	0	289	2	7.34794	7.50677	7.6656	0.00164606	1.6898e-5	0.0250898	7.44477e-4
chr17	3824469	3824563	6838731	0	-	0.297872	(0.29,0.33]	chr17	691919	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NCBP3	ENSG00000074356.17	ENST00000389005.6:ENST00000574911.5:ENST00000575815.5:ENST00000577169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	613	2	6.39154	7.506765	8.62199	4.61491e-5	1.73847e-6	0.00374349	1.51436e-4
chr17	80893206	80893287	6812409	0	+	0.666667	(0.58,1]	chr17	687925	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPTOR	ENSG00000141564.15	ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	565	2	6.64261	7.506600000000001	8.37059	2.65175e-5	2.1945e-7	0.00292723	3.89185e-5
chr8	9772268	9772368	3754899	0	+	0.37	(0.36,0.39]	chr8	360883	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	0	288	2	7.45035	7.506080000000001	7.56181	8.85298e-4	2.63375e-5	0.0177354	0.00102154
chr8	120792077	120792177	4059824	0	-	0.39	(0.36,0.39]	chr8	386607	978	INTRON	INTRON	SNTB1	ENSG00000172164.15	ENST00000395601.7:ENST00000517992.2:ENST00000648490.1:ENST00000519177.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	1032	2	5.75379	7.50467	9.25555	3.17089e-5	2.51308e-6	0.00314787	1.94522e-4
chr12	132536750	132536850	5352983	0	+	0.4	(0.39,0.419]	chr12	523670	84	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	641	2	6.51528	7.50334	8.4914	1.52597e-4	2.15187e-6	0.00689544	1.75351e-4
chr17	15466559	15466659	6860100	0	-	0.56	(0.523,0.58]	chr17	695067	131	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	280	2	7.40886	7.5032250000000005	7.59759	7.2654e-4	7.31734e-6	0.0158761	4.11658e-4
chrX	2383360	2383460	7967677	0	-	0.36	(0.33,0.36]	chrX	834355	450	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	292	2	7.24736	7.503135	7.75891	4.6914e-4	3.90095e-5	0.0125256	0.0013666
chr16	83916384	83916484	6513088	0	+	0.6	(0.58,1]	chr16	646141	10	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	278	2	7.05519	7.5029699999999995	7.95075	5.81818e-4	6.67696e-7	0.0141176	8.03272e-5
chr14	39297691	39297790	5792491	0	+	0.363636	(0.36,0.39]	chr14	567538	23	INTRON	INTRON	MIA2	ENSG00000150527.18	ENST00000553728.1:ENST00000640607.2:ENST00000341749.7:ENST00000557038.5:ENST00000396165.8:ENST00000396158.6:ENST00000280083.7:ENST00000341502.9:ENST00000556148.5:ENST00000348007.7:ENST00000553352.1	protein_coding	protein_coding	protein_coding	protein_coding	0	325	2	6.67396	7.502525	8.33109	0.00448681	1.81947e-6	0.0436138	1.55984e-4
chr5	10431613	10431711	2383229	0	+	0.489796	(0.485,0.523]	chr5	238451	12	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	289	2	7.23498	7.50248	7.76998	3.44588e-4	2.48079e-5	0.0106222	9.81945e-4
chr12	132951260	132951359	5542044	0	-	0.454545	(0.45,0.485]	chr12	547064	26	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	625	2	6.6663	7.502425	8.33855	1.36717e-4	8.17097e-7	0.00649687	9.1976e-5
chr16	57376479	57376577	6466029	0	+	0.520408	(0.485,0.523]	chr16	641365	35	INTRON	INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1	protein_coding	protein_coding	protein_coding	protein_coding	0	286	2	7.29927	7.5019849999999995	7.7047	3.94091e-4	2.02879e-5	0.0113656	8.47843e-4
chr2	199935730	199935830	1354127	0	-	0.42	(0.419,0.45]	chr2	143796	4	SS5_PROX	SS5_PROX:INTRON	TYW5	ENSG00000162971.11	ENST00000354611.9:ENST00000483328.5:ENST00000452512.6:ENST00000441832.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	296	2	7.2403	7.50184	7.76338	7.71033e-4	5.79892e-5	0.0164417	0.00182637
chr17	76547992	76548091	6977085	0	-	0.363636	(0.36,0.39]	chr17	712268	17	INTRON	INTRON	CYGB:ENSG00000267546	ENSG00000161544.10:ENSG00000267546.2	ENST00000589145.1:ENST00000589963.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	301	2	6.9486	7.50155	8.0545	0.00275221	4.26867e-6	0.0332418	2.82803e-4
chr9	134369474	134369574	4261118	0	+	0.59	(0.58,1]	chr9	406311	425	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	284	2	7.1289	7.499174999999999	7.86945	8.84248e-5	1.22303e-5	0.00521355	5.9245e-4
chr10	112185562	112185662	4760642	0	-	0.39	(0.36,0.39]	chr10	455255	19	INTRON	INTRON	GPAM	ENSG00000119927.14	ENST00000480130.5:ENST00000498541.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	892	2	6.42643	7.499005	8.57158	1.24679e-4	6.3669e-7	0.00618972	7.8222e-5
chrX	9568341	9568441	7843483	0	+	0.49	(0.485,0.523]	chrX	822423	74	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	613	2	6.2675	7.498865	8.73023	4.55965e-5	2.38204e-6	0.00373545	1.87577e-4
chr16	78767414	78767514	6502092	0	+	0.43	(0.419,0.45]	chr16	645713	100	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6:ENST00000408984.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	294	2	7.09709	7.498749999999999	7.90041	0.00257476	8.42749e-6	0.0321387	4.54808e-4
chr3	31980798	31980898	1730403	0	-	0.66	(0.58,1]	chr3	179065	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	OSBPL10	ENSG00000144645.15	ENST00000396556.7:ENST00000438237.6:ENST00000480671.5:ENST00000479173.1:ENST00000452791.1:ENST00000465626.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	279	2	7.21489	7.498635	7.78238	1.08681e-4	9.09859e-6	0.00582254	4.79891e-4
chr12	45983689	45983788	5418500	0	-	0.454545	(0.45,0.485]	chr12	530454	76	INTRON	INTRON	SCAF11	ENSG00000139218.18	ENST00000369367.8:ENST00000547018.5:ENST00000266589.10:ENST00000395454.6:ENST00000395453.2:ENST00000474828.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	1	749	2	6.08954	7.497845	8.90615	1.71034e-4	1.50262e-7	0.00731639	3.00506e-5
chr20	8493938	8494038	7430207	0	+	0.5	(0.485,0.523]	chr20	773698	1219	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	1002	2	5.71225	7.49756	9.28287	1.19179e-4	2.83092e-8	0.00607117	1.03475e-5
chr7	143385325	143385422	3510758	0	+	0.412371	(0.39,0.419]	chr7	338486	7	INTRON	INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	285	2	7.43724	7.49667	7.5561	0.00115704	1.94807e-5	0.0205679	8.25524e-4
chr10	133349487	133349587	4783429	0	-	0.55	(0.523,0.58]	chr10	457516	33	INTRON	INTRON	ENSG00000226699	ENSG00000226699.1	ENST00000452591.1	lncRNA	lncRNA	lncRNA	lncRNA	0	293	2	7.12939	7.495815	7.86224	2.88079e-4	3.23178e-5	0.00964028	0.00118877
chr10	133349188	133349288	4783426	0	-	0.5	(0.485,0.523]	chr10	457516	30	INTRON	INTRON	ENSG00000226699	ENSG00000226699.1	ENST00000452591.1	lncRNA	lncRNA	lncRNA	lncRNA	0	296	2	7.08258	7.494730000000001	7.90688	2.59633e-4	3.97904e-5	0.0091161	0.00138788
chr8	727155	727255	3933002	0	-	0.48	(0.45,0.485]	chr8	376060	108	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	291	2	7.01529	7.494155	7.97302	0.00188703	3.15599e-6	0.0271069	2.27679e-4
chr19	33203286	33203386	7240905	0	+	0.45	(0.419,0.45]	chr19	741409	3	SS5_PROX	SS5_PROX:INTRON	LRP3	ENSG00000130881.14	ENST00000592484.5:ENST00000253193.9:ENST00000590275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	317	2	6.74638	7.494125	8.24187	0.00473615	3.01699e-6	0.0449264	2.21069e-4
chr20	58694892	58694992	7498632	0	+	0.5	(0.485,0.523]	chr20	782001	3	SS5_PROX	SS5_PROX:INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	282	2	7.16424	7.492685	7.82113	0.0011719	3.82538e-6	0.0206836	2.62442e-4
chr2	239347082	239347182	1392181	0	-	0.38	(0.36,0.39]	chr2	148752	226	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	769	2	5.93336	7.492575	9.05179	3.07442e-4	1.89053e-7	0.00996934	3.52002e-5
chr8	63195722	63195821	3835300	0	+	0.484848	(0.45,0.485]	chr8	368283	68	INTRON	INTRON	YTHDF3	ENSG00000185728.17	ENST00000617200.1:ENST00000623280.3:ENST00000539294.6:ENST00000621957.4:ENST00000517371.5:ENST00000615676.1:ENST00000621413.4:ENST00000621890.4:ENST00000621820.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	620	2	6.26299	7.492185	8.72138	6.19644e-5	3.04887e-6	0.00437718	2.22628e-4
chr9	135838261	135838361	4431129	0	-	0.49	(0.485,0.523]	chr9	423507	103	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	279	2	7.28081	7.49167	7.70253	9.29716e-4	5.61759e-6	0.0182159	3.43198e-4
chr16	85374042	85374142	6516811	0	+	0.53	(0.523,0.58]	chr16	646391	147	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	639	2	5.96743	7.491375	9.0153199999999991	2.50539e-5	6.05273e-6	0.00286113	3.5986e-4
chr19	3530691	3530791	7191605	0	+	0.56	(0.523,0.58]	chr19	732251	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	284	2	7.27752	7.49089	7.70426	3.98791e-4	2.03194e-5	0.0114313	8.47843e-4
chr9	33157077	33157177	4293484	0	-	0.52	(0.485,0.523]	chr9	410135	213	INTRON	INTRON	B4GALT1	ENSG00000086062.13	ENST00000535206.5:ENST00000379731.5	protein_coding	protein_coding	protein_coding	protein_coding	0	282	2	7.33651	7.49078	7.64505	4.45318e-4	1.80479e-5	0.0121479	7.82415e-4
chr5	180573487	180573587	2606408	0	+	0.48	(0.45,0.485]	chr5	259159	1	SS3_PROX	SS3_PROX:INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4	protein_coding	protein_coding	protein_coding	protein_coding	0	287	2	7.2605	7.490595000000001	7.72069	4.77804e-4	2.93313e-5	0.0126433	0.00110673
chrX	18553391	18553491	7851521	0	+	0.42	(0.419,0.45]	chrX	823328	422	INTRON	INTRON	CDKL5	ENSG00000008086.13	ENST00000379996.7:ENST00000623535.2:ENST00000674046.1:ENST00000635828.1:ENST00000637881.1:ENST00000379989.6:ENST00000623364.3:ENST00000624700.3:ENST00000463994.4	protein_coding	protein_coding	protein_coding	protein_coding	0	298	2	7.14867	7.4905	7.83233	6.7859e-4	7.52409e-5	0.0153241	0.00222212
chr14	94308750	94308847	6046260	0	-	0.443299	(0.419,0.45]	chr14	593049	22	INTRON	INTRON	SERPINA6	ENSG00000170099.6	ENST00000341584.4:ENST00000555056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	652	2	6.15326	7.4893350000000005	8.82541	1.03219e-4	7.68656e-6	0.0056665	4.26753e-4
chr19	735518	735610	7184607	0	+	0.673913	(0.58,1]	chr19	730571	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PALM	ENSG00000099864.18	ENST00000338448.10:ENST00000264560.11:ENST00000589012.5:ENST00000593172.5:ENST00000633534.1:ENST00000592155.5:ENST00000590161.2:ENST00000587513.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	320	2	6.70249	7.4888650000000005	8.27524	5.11463e-5	3.34154e-5	0.00320976	0.00167326
chr12	23950230	23950299	5388531	0	-	0.492754	(0.485,0.523]	chr12	528204	2	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2:ENST00000536729.2:ENST00000446891.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	687	2	7.22366	7.488795	7.75393	3.56163e-4	9.43125e-8	0.0107631	2.24672e-5
chr18	74916219	74916319	7092444	0	+	0.49	(0.485,0.523]	chr18	722466	104	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	288	2	7.18141	7.487565	7.79372	3.28131e-4	2.93111e-5	0.010311	0.00110673
chr7	223045	223145	3305885	0	+	0.51	(0.485,0.523]	chr7	320161	137	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	2	817	2	6.30209	7.48687	8.67165	5.16935e-5	4.34174e-7	0.00398994	6.05322e-5
chr11	45882275	45882372	4850376	0	+	0.505155	(0.485,0.523]	chr11	463885	15	UTR3	UTR3:EXON_MRNA	CRY2	ENSG00000121671.12	ENST00000616623.4:ENST00000443527.6:ENST00000616080.2	protein_coding	protein_coding	protein_coding	protein_coding	0	278	2	7.46537	7.486815	7.50826	5.88357e-4	1.2008e-5	0.0142143	5.85397e-4
chr16	1507716	1507816	6370022	0	+	0.61	(0.58,1]	chr16	628649	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TELO2	ENSG00000100726.15	ENST00000262319.11:ENST00000568240.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	268	2	7.46932	7.486784999999999	7.50425	2.08552e-4	3.74461e-6	0.00813372	2.5891e-4
chr18	79356861	79356961	7099854	0	+	0.63	(0.58,1]	chr18	722963	83	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000426216.6:ENST00000307671.12:ENST00000490210.6:ENST00000590477.5:ENST00000589951.5:ENST00000588921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	270	2	7.37287	7.486415	7.59996	1.66865e-4	5.25408e-6	0.00722822	3.26574e-4
chr19	6679024	6679124	7322508	0	-	0.56	(0.523,0.58]	chr19	756373	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000599899.5:ENST00000695690.1:ENST00000695691.1:ENST00000695689.1:ENST00000695653.1:ENST00000695654.1:ENST00000602229.1:ENST00000599668.1:ENST00000601008.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	804	2	6.18241	7.486219999999999	8.79003	4.06812e-5	6.0706e-7	0.00354247	7.53534e-5
chr5	116212447	116212547	2511094	0	+	0.46	(0.45,0.485]	chr5	249634	779	INTRON	INTRON	COMMD10	ENSG00000145781.9	ENST00000507356.5:ENST00000274458.9:ENST00000632434.1:ENST00000515539.5:ENST00000506589.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	283	2	7.15543	7.485935	7.81644	0.00144472	5.19579e-6	0.0232985	3.24753e-4
chr5	882155	882252	2608197	0	-	0.494845	(0.485,0.523]	chr5	259472	11	EXON_MRNA	EXON_MRNA:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	279	2	7.212	7.485245	7.75849	0.00106612	4.68783e-6	0.0196248	3.01071e-4
chr2	239346183	239346282	1392172	0	-	0.393939	(0.39,0.419]	chr2	148752	217	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	852	2	6.1358	7.4845749999999995	8.83335	7.7593e-5	1.61576e-6	0.00492182	1.43996e-4
chr19	16853850	16853946	7217910	0	+	0.520833	(0.485,0.523]	chr19	737639	3	SS3_PROX	SS3_PROX:INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000596802.5:ENST00000596638.1	protein_coding	protein_coding	protein_coding	protein_coding	0	285	2	7.03741	7.484065	7.93072	0.0015038	2.67581e-6	0.0239138	2.02429e-4
chr13	113056201	113056301	5656199	0	+	0.51	(0.485,0.523]	chr13	555189	14	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	295	2	7.05305	7.483585	7.91412	2.55762e-4	4.35721e-5	0.00905867	0.00149008
chr4	1323808	1323908	1995276	0	+	0.66	(0.58,1]	chr4	203263	2	SS5_PROX	SS5_PROX:INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	267	2	7.2914	7.483435	7.67547	3.40674e-4	1.80135e-6	0.010549	1.55302e-4
chr4	67804218	67804318	2050565	0	+	0.46	(0.45,0.485]	chr4	209734	14	INTRON	INTRON	UBA6-DT	ENSG00000248049.8	ENST00000500538.7:ENST00000667140.1:ENST00000663060.1	lncRNA	lncRNA	lncRNA	lncRNA	0	289	2	7.1816	7.48324	7.78488	4.20312e-4	3.72834e-5	0.011772	0.00131851
chr18	79357160	79357259	7099857	0	+	0.646465	(0.58,1]	chr18	722963	86	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000426216.6:ENST00000307671.12:ENST00000490210.6:ENST00000590477.5:ENST00000589951.5:ENST00000588921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	275	2	7.21489	7.482125	7.74936	1.17491e-4	9.09859e-6	0.00604041	4.79891e-4
chr10	18568759	18568859	4642416	0	-	0.4	(0.39,0.419]	chr10	443321	164	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	285	2	7.35869	7.481915	7.60514	8.44342e-4	3.48906e-5	0.017268	0.00126097
chr12	53188881	53188981	5235216	0	+	0.43	(0.419,0.45]	chr12	508673	14	UTR3	UTR3:EXON_MRNA	ZNF740	ENSG00000139651.11	ENST00000416904.5	protein_coding	protein_coding	protein_coding	protein_coding	1	644	2	6.58854	7.4816	8.37466	2.44823e-4	2.03527e-6	0.00884339	1.68465e-4
chr19	47230032	47230131	7392382	0	-	0.575758	(0.523,0.58]	chr19	768106	12	INTRON	INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	1	597	2	6.49275	7.481325	8.4699	8.05624e-5	1.05156e-6	0.00498873	1.07818e-4
chr12	122092962	122093062	5343518	0	+	0.47	(0.45,0.485]	chr12	521864	133	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	284	2	7.27324	7.480365000000001	7.68749	5.10466e-4	2.82126e-5	0.0131229	0.00107564
chr16	85400831	85400931	6517079	0	+	0.51	(0.485,0.523]	chr16	646391	415	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	313	2	6.8275	7.477955	8.12841	1.63536e-4	8.64447e-5	0.00716861	0.00245611
chr6	1806457	1806557	3080937	0	-	0.45	(0.419,0.45]	chr6	299482	635	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	637	2	6.36202	7.477755	8.59349	1.61226e-4	4.07551e-6	0.00712539	2.74028e-4
chr7	76997424	76997523	3398774	0	+	0.606061	(0.58,1]	chr7	328286	67	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	289	2	6.97312	7.4767150000000004	7.98031	6.7909e-5	2.07776e-5	0.00459677	8.62032e-4
chr2	32532152	32532246	749592	0	+	0.425532	(0.419,0.45]	chr2	87500	1	EXON_SMALL	EXON_SMALL:PRIMIRNA:INTRON	BIRC6:MIR558	ENSG00000115760.15:ENSG00000207653.1	ENST00000421745.7:ENST00000471232.5:ENST00000384920.1	miRNA	miRNA	miRNA:protein_coding	miRNA:protein_coding:retained_intron:primary_miRNA	0	283	2	7.46836	7.476535	7.48471	0.00132398	2.86803e-5	0.0222129	0.00108927
chr16	85456508	85456607	6517636	0	+	0.59596	(0.58,1]	chr16	646391	972	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	305	2	6.79845	7.476395	8.15434	4.47395e-5	3.72743e-5	0.00368958	0.00131851
chr2	239347881	239347981	1392189	0	-	0.55	(0.523,0.58]	chr2	148752	234	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	278	2	7.35233	7.47639	7.60045	4.93015e-4	1.60393e-5	0.0128889	7.1852e-4
chr18	77119423	77119522	7181515	0	-	0.535354	(0.523,0.58]	chr18	730186	138	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1:ENST00000583798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	324	2	6.72249	7.476279999999999	8.23007	1.3374e-4	1.11891e-4	0.00642129	0.00298349
chr13	20498093	20498193	5662821	0	-	0.42	(0.419,0.45]	chr13	556208	82	INTRON	INTRON	CRYL1	ENSG00000165475.15	ENST00000643035.1:ENST00000644593.1:ENST00000298248.12:ENST00000644872.1:ENST00000382812.5:ENST00000643750.1:ENST00000644153.1:ENST00000643887.1:ENST00000644167.1:ENST00000646414.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	289	2	7.25293	7.476065	7.6992	8.67988e-4	5.59361e-5	0.0175702	0.00178124
chr20	32476033	32476132	7543628	0	-	0.666667	(0.58,1]	chr20	787372	9	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	291	2	6.93984	7.474165	8.00849	6.34868e-5	2.32442e-5	0.004439	9.36605e-4
chr19	8248532	8248632	7200369	0	+	0.53	(0.523,0.58]	chr19	734198	67	INTRON	INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	289	2	7.10074	7.47397	7.8472	2.97175e-4	3.53278e-5	0.00982269	0.00126913
chr19	1170538	1170637	7305758	0	-	0.565657	(0.523,0.58]	chr19	753058	15	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	275	2	7.469	7.473925	7.47885	6.30946e-4	1.10612e-5	0.0147478	5.52474e-4
chr9	137781396	137781495	4266123	0	+	0.515152	(0.485,0.523]	chr9	407438	13	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	285	2	6.98339	7.47311	7.96283	0.00167095	2.40878e-6	0.0252949	1.89153e-4
chr19	16368457	16368556	7343614	0	-	0.474747	(0.45,0.485]	chr19	760668	61	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	608	2	6.53956	7.473	8.40644	1.1891e-4	1.23859e-6	0.00606093	1.20659e-4
chr10	68638701	68638801	4498279	0	+	0.42	(0.419,0.45]	chr10	430047	373	INTRON	INTRON	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	0	353	2	6.55525	7.472619999999999	8.38999	3.84925e-4	2.37788e-4	0.00868429	0.00726694
chr21	43974469	43974569	7625536	0	+	0.45	(0.419,0.45]	chr21	796959	26	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000398063.6:ENST00000398058.5:ENST00000546158.1:ENST00000479117.5:ENST00000467358.5:ENST00000484865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	282	2	7.33744	7.472614999999999	7.60779	0.00167748	2.00245e-5	0.0253722	8.4139e-4
chr1	61134227	61134327	146624	0	+	0.41	(0.39,0.419]	chr1	17147	13	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	762	2	5.85446	7.47256	9.09066	3.6985e-4	1.70047e-7	0.0110494	3.2675900000000003e-05
chr1	23392186	23392286	424237	0	-	0.44	(0.419,0.45]	chr1	49807	44	INTRON	INTRON	TCEA3	ENSG00000204219.11	ENST00000450454.7:ENST00000476978.2	protein_coding	protein_coding	protein_coding	protein_coding	0	291	2	7.02037	7.4723299999999995	7.92429	0.00294696	7.84779e-6	0.0344907	4.32984e-4
chr13	113215162	113215261	5657359	0	+	0.575758	(0.523,0.58]	chr13	555523	47	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000488558.2:ENST00000375440.9:ENST00000474116.5:ENST00000494985.5:ENST00000463426.5:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	274	2	7.34605	7.47182	7.59759	8.24125e-4	7.31734e-6	0.0170688	4.11658e-4
chr6	143442472	143442572	3281878	0	-	0.41	(0.39,0.419]	chr6	317273	6	INTRON	INTRON	ADAT2	ENSG00000189007.16	ENST00000237283.9	protein_coding	protein_coding	protein_coding	protein_coding	0	280	2	7.38691	7.4715050000000005	7.5561	0.00127077	1.94807e-5	0.0217357	8.25524e-4
chr1	11033934	11034032	399367	0	-	0.55102	(0.523,0.58]	chr1	45509	27	INTRON	INTRON	MASP2	ENSG00000009724.17	ENST00000400897.8	protein_coding	protein_coding	protein_coding	protein_coding	0	275	2	7.43498	7.471405000000001	7.50783	5.95022e-4	1.23313e-5	0.0143364	5.95111e-4
chr10	103692128	103692227	4757017	0	-	0.616162	(0.58,1]	chr10	454779	141	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	276	2	7.1436	7.4711	7.7986	1.0459e-4	1.16294e-5	0.00570277	5.71933e-4
chr9	134339235	134339334	4260815	0	+	0.707071	(0.58,1]	chr9	406311	122	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	273	2	7.20091	7.47095	7.74099	1.19833e-4	9.5483e-6	0.00607292	4.9724e-4
chr12	45983788	45983887	5418501	0	-	0.292929	(0.29,0.33]	chr12	530454	77	INTRON	INTRON	SCAF11	ENSG00000139218.18	ENST00000369367.8:ENST00000547018.5:ENST00000266589.10:ENST00000395454.6:ENST00000395453.2:ENST00000474828.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	0	278	2	7.30635	7.470415	7.63448	3.83204e-4	2.19588e-5	0.0112338	8.99734e-4
chr19	47229538	47229637	7392377	0	-	0.535354	(0.523,0.58]	chr19	768106	7	INTRON	INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	1	720	2	5.88477	7.470384999999999	9.056	2.18744e-4	5.53984e-8	0.00836218	1.58177e-5
chr7	6702979	6703077	3542743	0	-	0.510204	(0.485,0.523]	chr7	342318	22	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	1	723	2	6.15375	7.470319999999999	8.78689	1.22496e-4	1.5387e-7	0.00615226	3.04739e-5
chr7	1121857	1121957	3527447	0	-	0.66	(0.58,1]	chr7	340591	120	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	591	2	5.96271	7.470079999999999	8.97745	5.97902e-6	2.65862e-6	0.00149305	2.014e-4
chr8	127949335	127949435	3919353	0	+	0.47	(0.45,0.485]	chr8	374241	60	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1	lncRNA	lncRNA	lncRNA	lncRNA	1	606	2	6.35618	7.46999	8.5838	8.24441e-5	2.25325e-6	0.00502717	1.80805e-4
chr6	10589013	10589113	2850437	0	+	0.48	(0.45,0.485]	chr6	278695	17	INTRON	INTRON	GCNT2	ENSG00000111846.20	ENST00000410107.5:ENST00000489225.5:ENST00000397423.7:ENST00000495262.7:ENST00000475577.5:ENST00000489819.5:ENST00000474518.1:ENST00000379597.7:ENST00000485764.1:ENST00000461400.1:ENST00000316170.9:ENST00000459872.1:ENST00000265012.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	279	2	7.34741	7.46973	7.59205	6.16892e-4	2.24799e-5	0.0145945	9.15915e-4
chrX	133686782	133686881	8113026	0	-	0.525253	(0.523,0.58]	chrX	845486	246	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000667662.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	1089	2	5.46833	7.4693249999999995	9.47032	9.33874e-6	1.81523e-6	0.00182974	1.55823e-4
chr7	117002610	117002709	3452305	0	+	0.424242	(0.419,0.45]	chr7	334380	342	INTRON	INTRON	ST7:ENSG00000288635:ST7-OT4	ENSG00000004866.22:ENSG00000288635.1:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000421345.5:ENST00000471110.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	0	304	2	6.80854	7.469244999999999	8.12995	0.00425752	4.23257e-6	0.0422596	2.81411e-4
chr16	85269363	85269463	6515762	0	+	0.55	(0.523,0.58]	chr16	646377	416	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	355	2	6.47712	7.468579999999999	8.46004	2.30436e-4	8.22652e-5	0.00502313	0.00498593
chr2	11483280	11483379	719693	0	+	0.646465	(0.58,1]	chr2	84084	5	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000628795.2	protein_coding	protein_coding	protein_coding	protein_coding	5	2928	2	7.38325	7.468295	7.55334	6.83324e-7	4.25431e-10	7.94453e-4	7.29076e-7
chr11	71484745	71484844	4887710	0	+	0.484848	(0.45,0.485]	chr11	471504	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NADSYN1	ENSG00000172890.13	ENST00000319023.7:ENST00000525200.5:ENST00000529840.5:ENST00000530055.5:ENST00000526039.6:ENST00000531236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	282	2	7.24765	7.46757	7.68749	5.10466e-4	3.05036e-5	0.0131229	0.00114349
chr15	101354144	101354244	6363080	0	-	0.42	(0.419,0.45]	chr15	627201	60	INTRON	INTRON	PCSK6	ENSG00000140479.18	ENST00000677364.1:ENST00000676598.1:ENST00000558951.5:ENST00000398185.6:ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000679007.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000559605.1:ENST00000560902.5:ENST00000611967.4:ENST00000615296.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	634	2	6.49879	7.4669099999999995	8.43503	2.18248e-4	2.68167e-6	0.00835357	2.0278e-4
chr2	239084936	239085034	1389524	0	-	0.418367	(0.39,0.419]	chr2	148605	3	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000487617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	281	2	7.21294	7.466775	7.72061	0.00175257	1.19145e-5	0.0259791	5.82703e-4
chr1	1845779	1845879	384134	0	-	0.41	(0.39,0.419]	chr1	43823	57	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	280	2	7.25844	7.466290000000001	7.67414	0.00161191	1.36968e-5	0.0248552	6.42908e-4
chr22	37512437	37512536	7808331	0	-	0.575758	(0.523,0.58]	chr22	818439	3	INTRON	INTRON	CARD10	ENSG00000100065.15	ENST00000403299.5:ENST00000251973.10:ENST00000494166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	1195	2	6.48942	7.465845	8.44227	2.24297e-5	4.4844e-7	0.00273967	6.18848e-5
chr22	46639555	46639655	7744573	0	+	0.57	(0.523,0.58]	chr22	812052	12	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	0	273	2	7.42921	7.465725	7.50224	6.97397e-4	9.94429e-6	0.0155984	5.11988e-4
chr20	6016351	6016450	7425781	0	+	0.292929	(0.29,0.33]	chr20	773609	4	INTRON	INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	972	2	5.47606	7.46451	9.45296	7.34703e-6	3.41704e-6	0.00163344	2.41689e-4
chr1	30933642	30933742	434610	0	-	0.58	(0.523,0.58]	chr1	51445	3	SS3_PROX	SS3_PROX:INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000530669.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	275	2	7.36443	7.46427	7.56411	5.30836e-4	1.54352e-5	0.0134466	6.98728e-4
chr12	2960553	2960653	5157689	0	+	0.57	(0.523,0.58]	chr12	501257	2	SS5_PROX	SS5_PROX:INTRON	TEAD4	ENSG00000197905.10	ENST00000358409.7:ENST00000359864.8:ENST00000540314.2:ENST00000536826.2:ENST00000543035.6:ENST00000397122.6:ENST00000443986.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	273	2	7.28037	7.46416	7.64795	9.39615e-4	6.21771e-6	0.0183413	3.67561e-4
chr2	87528915	87529015	847939	0	+	0.49	(0.485,0.523]	chr2	95749	75	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000642451.1:ENST00000644478.1:ENST00000409139.6:ENST00000644125.1:ENST00000643743.1:ENST00000643276.1:ENST00000409898.2:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000646636.1:ENST00000629257.1:ENST00000409054.2	lncRNA	lncRNA	lncRNA	lncRNA	0	282	2	6.99708	7.463900000000001	7.93072	0.00162697	2.67581e-6	0.0249683	2.02429e-4
chr2	161327955	161328055	939079	0	+	0.39	(0.36,0.39]	chr2	103725	87	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	1	631	2	6.63931	7.46386	8.28841	2.17952e-4	1.44249e-6	0.00834979	1.3333e-4
chr22	50234324	50234424	7827204	0	-	0.62	(0.58,1]	chr22	821200	4	INTRON	INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	263	2	7.41233	7.463785	7.51524	2.58019e-4	3.18434e-6	0.00908087	2.29035e-4
chrX	2382960	2383060	7967673	0	-	0.43	(0.419,0.45]	chrX	834355	446	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	280	2	7.40941	7.4629449999999995	7.51648	0.00147325	2.6148e-5	0.0235837	0.00101748
chr1	950435	950530	379865	0	-	0.505263	(0.485,0.523]	chr1	42700	15	INTRON	INTRON	NOC2L	ENSG00000188976.11	ENST00000327044.7:ENST00000477976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	276	2	7.13975	7.4627099999999995	7.78567	0.00122997	4.2924e-6	0.0212869	2.82813e-4
chr5	131533132	131533231	2756294	0	-	0.464646	(0.45,0.485]	chr5	270123	2	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	275	2	7.45081	7.46251	7.47421	8.14729e-4	1.51996e-5	0.016997	6.9067e-4
chr4	1176474	1176573	2179441	0	-	0.373737	(0.36,0.39]	chr4	220858	34	INTRON	INTRON	SPON2	ENSG00000159674.12	ENST00000617421.4:ENST00000515004.5:ENST00000502483.5:ENST00000509233.5:ENST00000511679.5:ENST00000511672.5:ENST00000506266.1:ENST00000504871.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	345	2	6.39688	7.4619	8.52692	0.00723998	9.88821e-7	0.0565323	1.04446e-4
chr6	170399167	170399267	3076571	0	+	0.41	(0.39,0.419]	chr6	299192	32	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	3	2362	2	7.08646	7.461855	7.83725	3.17645e-5	6.9033e-9	0.00314988	4.21173e-6
chr2	231808769	231808866	1051055	0	+	0.546392	(0.523,0.58]	chr2	114511	3	UTR3	UTR3:EXON_MRNA	COPS7B	ENSG00000144524.18	ENST00000611614.4:ENST00000620578.4:ENST00000413197.5:ENST00000350033.8:ENST00000373608.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	272	2	7.35671	7.461605	7.5665	8.06717e-4	8.08882e-6	0.0168786	4.41353e-4
chr14	89513875	89513975	6029252	0	-	0.52	(0.485,0.523]	chr14	591496	198	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000555353.5:ENST00000555855.5	protein_coding	protein_coding	protein_coding	protein_coding	0	289	2	7.05305	7.461595	7.87014	2.80185e-4	4.35721e-5	0.00950092	0.00149008
chr18	46259759	46259858	7056570	0	+	0.545455	(0.523,0.58]	chr18	720269	56	INTRON	INTRON	C18orf25	ENSG00000152242.11	ENST00000615052.5:ENST00000619301.4	protein_coding	protein_coding	protein_coding	protein_coding	0	272	2	7.34605	7.4614899999999995	7.57693	8.24125e-4	7.82132e-6	0.0170688	4.32234e-4
chr10	79220973	79221073	4533571	0	+	0.44	(0.419,0.45]	chr10	432457	43	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	774	2	6.09858	7.4608550000000005	8.82313	2.7542e-4	5.07482e-7	0.00944319	6.70044e-5
chr5	882855	882955	2608205	0	-	0.53	(0.523,0.58]	chr5	259475	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	801	2	6.30225	7.46064	8.61903	5.86504e-5	4.03276e-7	0.00425087	5.75541e-5
chr16	16155589	16155682	6556407	0	-	0.451613	(0.45,0.485]	chr16	653054	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6:ENST00000576204.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	275	2	7.26075	7.46053	7.66031	0.00117955	8.50368e-6	0.020761	4.57175e-4
chr15	60542807	60542907	6284947	0	-	0.55	(0.523,0.58]	chr15	619503	106	INTRON	INTRON	RORA	ENSG00000069667.16	ENST00000335670.11:ENST00000261523.9:ENST00000309157.8:ENST00000449337.6:ENST00000551975.5:ENST00000560004.5:ENST00000559343.1:ENST00000558234.1:ENST00000557822.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	793	2	6.65441	7.46042	8.26643	4.22466e-5	8.09622e-7	0.00361787	9.13796e-5
chr10	95358601	95358700	4733219	0	-	0.484848	(0.45,0.485]	chr10	451905	4	INTRON	INTRON	SORBS1	ENSG00000095637.23	ENST00000371227.8:ENST00000306402.10:ENST00000371249.6:ENST00000371247.7:ENST00000371246.6:ENST00000634504.1:ENST00000607232.5:ENST00000361941.7:ENST00000277982.9:ENST00000371245.7:ENST00000371241.5:ENST00000354106.7:ENST00000371239.5:ENST00000474353.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	353	2	6.4823	7.45951	8.43672	2.88849e-4	1.1172e-4	0.00590733	0.00589673
chr15	52135856	52135956	6261563	0	-	0.46	(0.45,0.485]	chr15	617063	1	SS3_PROX	SS3_PROX:INTRON	GNB5	ENSG00000069966.19	ENST00000261837.12:ENST00000396335.8:ENST00000358784.11:ENST00000559348.5:ENST00000558519.5:ENST00000561313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	304	2	6.88225	7.4592849999999995	8.03632	2.533e-4	9.12292e-5	0.00901269	0.00255062
chr22	50234424	50234523	7827205	0	-	0.626263	(0.58,1]	chr22	821200	5	INTRON	INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	262	2	7.38034	7.459	7.53766	2.77767e-4	2.94146e-6	0.00947659	2.17062e-4
chr13	113020844	113020944	5655833	0	+	0.38	(0.36,0.39]	chr13	555145	56	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	278	2	7.43927	7.45846	7.47765	0.00103755	2.72133e-5	0.019365	0.00104921
chr3	48425833	48425930	1766692	0	-	0.484536	(0.45,0.485]	chr3	182283	1	INTRON	INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	2180	2	6.78892	7.4578500000000005	8.12678	1.51117e-5	6.12104e-9	0.00223783	3.93872e-6
chr6	170398370	170398470	3076563	0	+	0.42	(0.419,0.45]	chr6	299192	24	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	2	1783	2	6.70239	7.457129999999999	8.21187	8.56839e-5	1.24514e-8	0.00513437	6.1505e-6
chr1	17675484	17675584	54966	0	+	0.55	(0.523,0.58]	chr1	5603	105	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	728	2	6.28484	7.457115	8.62939	9.35119e-5	2.38087e-7	0.00538179	4.07186e-5
chr19	36489312	36489412	7369767	0	-	0.54	(0.523,0.58]	chr19	764033	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF566	ENSG00000186017.16	ENST00000493391.6:ENST00000392170.7:ENST00000452939.7:ENST00000427002.2:ENST00000424129.7:ENST00000434377.6:ENST00000472909.6:ENST00000460937.5:ENST00000480361.1:ENST00000494354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	278	2	7.03698	7.45668	7.87638	0.00151874	2.95188e-6	0.0240441	2.17437e-4
chr19	33203086	33203186	7240903	0	+	0.53	(0.523,0.58]	chr19	741409	1	SS5_PROX	SS5_PROX:INTRON	LRP3	ENSG00000130881.14	ENST00000592484.5:ENST00000253193.9:ENST00000590275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	299	2	6.71116	7.45581	8.20046	0.00284169	1.00936e-6	0.033773	1.05357e-4
chr1	17674185	17674285	54953	0	+	0.58	(0.523,0.58]	chr1	5603	92	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	279	2	7.19861	7.4556000000000004	7.71259	3.92044e-4	2.60365e-5	0.0113511	0.00101533
chr13	113012365	113012465	5655747	0	+	0.65	(0.58,1]	chr13	555138	100	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	270	2	7.18679	7.45544	7.72409	1.247e-4	1.00244e-5	0.00618972	5.13591e-4
chr16	29273812	29273912	6433575	0	+	0.43	(0.419,0.45]	chr16	636745	217	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	1	802	2	6.3617	7.455265000000001	8.54883	1.65967e-4	1.18239e-6	0.00722822	1.16536e-4
chrX	1595632	1595732	7830200	0	+	0.54	(0.523,0.58]	chrX	822079	1	SS5_PROX	SS5_PROX:INTRON	AKAP17A	ENSG00000197976.12	ENST00000313871.9:ENST00000474361.6:ENST00000381261.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	271	2	7.3026	7.4552	7.6078	8.98889e-4	7.07993e-6	0.0178386	4.04575e-4
chr17	77486423	77486523	6805246	0	+	0.58	(0.523,0.58]	chr17	686821	24	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	596	2	6.1764	7.455145	8.73389	4.58823e-5	3.03283e-6	0.00373545	2.2176e-4
chr14	68898487	68898585	5999324	0	-	0.571429	(0.523,0.58]	chr14	588704	44	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	273	2	7.36443	7.45501	7.54559	5.51177e-4	1.54352e-5	0.0136794	6.98728e-4
chr2	54481380	54481480	798524	0	+	0.41	(0.39,0.419]	chr2	90783	237	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7	protein_coding	protein_coding	protein_coding	protein_coding	0	277	2	7.43724	7.45446	7.47168	0.00115704	2.50197e-5	0.0205679	9.88464e-4
chr11	70777357	70777457	5062055	0	-	0.49	(0.485,0.523]	chr11	492701	595	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	273	2	7.36081	7.4534199999999995	7.54603	5.44941e-4	1.67181e-5	0.0136434	7.38685e-4
chr13	113506459	113506558	5658341	0	+	0.565657	(0.523,0.58]	chr13	555703	5	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000462877.5	protein_coding	protein_coding	protein_coding	protein_coding	0	276	2	7.25169	7.45249	7.65329	4.42635e-4	2.20409e-5	0.0121006	9.00215e-4
chr10	132755572	132755672	4619028	0	+	0.55	(0.523,0.58]	chr10	441201	17	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	0	271	2	7.43498	7.452015	7.46905	6.43551e-4	1.23313e-5	0.0148938	5.95111e-4
chr9	108900924	108901024	4362801	0	-	0.5	(0.485,0.523]	chr9	416550	1	SS5_PROX	SS5_PROX:INTRON	ELP1	ENSG00000070061.16	ENST00000675765.1:ENST00000374647.10:ENST00000675078.1:ENST00000674948.1:ENST00000676121.1:ENST00000676429.1:ENST00000674704.1:ENST00000674938.1:ENST00000675602.1:ENST00000675215.1:ENST00000676044.1:ENST00000675979.1:ENST00000675325.1:ENST00000495759.6:ENST00000675893.1:ENST00000675943.1:ENST00000675535.1:ENST00000674890.1:ENST00000675233.1:ENST00000676086.1:ENST00000674836.1:ENST00000675406.1:ENST00000675748.1:ENST00000675400.1:ENST00000676237.1:ENST00000675825.1:ENST00000676424.1:ENST00000675647.1:ENST00000675877.1:ENST00000676416.1:ENST00000675052.1:ENST00000674535.1:ENST00000537196.1:ENST00000675566.1:ENST00000675507.1:ENST00000675727.1:ENST00000675711.1:ENST00000675458.1:ENST00000675335.1:ENST00000675321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	271	2	7.26956	7.451975	7.63439	9.50795e-4	6.99649e-6	0.0184489	4.00488e-4
chr1	93454300	93454400	185675	0	+	0.38	(0.36,0.39]	chr1	20160	56	INTRON	INTRON	FNBP1L	ENSG00000137942.18	ENST00000271234.13:ENST00000260506.12:ENST00000370253.6	protein_coding	protein_coding	protein_coding	protein_coding	0	282	2	7.23666	7.45177	7.66688	7.25302e-4	4.92653e-5	0.0158761	0.00162872
chr12	46223472	46223572	5419009	0	-	0.37	(0.36,0.39]	chr12	530531	140	INTRON	INTRON	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000612161.4:ENST00000549633.5:ENST00000551506.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	618	2	6.28258	7.4514700000000005	8.62036	1.13178e-4	4.38974e-6	0.00593833	2.87199e-4
chr21	33237046	33237146	7609139	0	+	0.57	(0.523,0.58]	chr21	794612	61	INTRON	INTRON	IFNAR2	ENSG00000159110.21	ENST00000683941.1:ENST00000382264.7:ENST00000342136.9:ENST00000404220.7:ENST00000420068.1:ENST00000342101.7:ENST00000382238.6:ENST00000413881.5:ENST00000443073.5:ENST00000447980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	280	2	7.15748	7.451445	7.74541	3.66506e-4	2.96091e-5	0.0109836	0.00111477
chr2	11483579	11483679	719696	0	+	0.59	(0.58,1]	chr2	84084	8	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000628795.2	protein_coding	protein_coding	protein_coding	protein_coding	1	645	2	6.09555	7.451410000000001	8.80727	5.36031e-5	2.79204e-8	0.00405853	1.02606e-5
chr12	100543514	100543614	5305606	0	+	0.41	(0.39,0.419]	chr12	516615	23	INTRON	INTRON	NR1H4	ENSG00000012504.15	ENST00000548884.5:ENST00000392986.8:ENST00000321046.9:ENST00000549996.5:ENST00000648861.1:ENST00000188403.7:ENST00000551379.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	683	2	7.03991	7.451219999999999	7.86253	5.17652e-4	4.12317e-7	0.0132228	5.82888e-5
chr9	91420354	91420454	4334182	0	-	0.42	(0.419,0.45]	chr9	414047	91	INTRON	INTRON	NFIL3	ENSG00000165030.4	ENST00000297689.4	protein_coding	protein_coding	protein_coding	protein_coding	0	279	2	7.21654	7.45045	7.68436	0.00208302	1.59898e-5	0.0287557	7.18027e-4
chr11	70741085	70741185	5061692	0	-	0.48	(0.45,0.485]	chr11	492701	232	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	736	2	6.22446	7.45026	8.67606	1.29328e-4	3.21484e-7	0.00631399	4.95793e-5
chr5	180809731	180809829	2823312	0	-	0.520408	(0.485,0.523]	chr5	277054	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	MGAT1	ENSG00000131446.17	ENST00000333055.8:ENST00000393340.7:ENST00000446023.6:ENST00000506889.1:ENST00000514438.1:ENST00000513431.5:ENST00000504385.5:ENST00000514760.1:ENST00000512080.1:ENST00000510341.1:ENST00000508702.1:ENST00000513149.1:ENST00000508090.1:ENST00000510962.1:ENST00000506708.1:ENST00000506033.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	594	2	6.19429	7.44985	8.70541	4.80875e-5	3.03566e-6	0.00382077	2.2176e-4
chr16	89306142	89306242	6659873	0	-	0.7	(0.58,1]	chr16	666665	4	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1:ENST00000647539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	262	2	7.18431	7.44983	7.71535	4.34792e-4	1.5617e-6	0.0119405	1.40814e-4
chr3	172091880	172091980	1627986	0	+	0.47	(0.45,0.485]	chr3	170535	446	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	4009	2	7.16083	7.449225	7.73762	1.98143e-6	8.49112e-9	0.00102698	4.74959e-6
chr10	44969064	44969164	4483219	0	+	0.43	(0.419,0.45]	chr10	428600	88	INTRON	INTRON	RASSF4	ENSG00000107551.21	ENST00000489171.5:ENST00000340258.10:ENST00000427758.5:ENST00000483709.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	283	2	7.2403	7.44894	7.65758	9.37054e-4	5.79892e-5	0.0183114	0.00182637
chr18	79357757	79357857	7099863	0	+	0.64	(0.58,1]	chr18	722963	92	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000426216.6:ENST00000307671.12:ENST00000490210.6:ENST00000590477.5:ENST00000589951.5:ENST00000588921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	267	2	7.21489	7.4479299999999995	7.68097	1.38011e-4	9.09859e-6	0.00651662	4.79891e-4
chr8	12722797	12722896	3938956	0	-	0.373737	(0.36,0.39]	chr8	376543	10	UTR3	UTR3:EXON_MRNA	LONRF1	ENSG00000154359.13	ENST00000398246.8:ENST00000526680.5:ENST00000527055.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	303	2	6.89135	7.44777	8.00419	3.79396e-4	1.32362e-4	0.0111551	0.00337119
chr17	81137899	81137999	6982881	0	-	0.62	(0.58,1]	chr17	713268	30	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	260	2	7.40175	7.4471050000000005	7.49246	2.64397e-4	3.45114e-6	0.00920003	2.43327e-4
chr22	32671558	32671658	7791374	0	-	0.51	(0.485,0.523]	chr22	817442	413	INTRON	INTRON	SYN3	ENSG00000185666.15	ENST00000358763.7:ENST00000462268.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	321	2	6.4776	7.446605	8.41561	0.00436205	5.37429e-7	0.0427656	6.9537e-5
chr1	17676483	17676582	54976	0	+	0.59596	(0.58,1]	chr1	5603	115	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	270	2	7.1436	7.44648	7.74936	1.17491e-4	1.16294e-5	0.00604041	5.71933e-4
chr3	58335022	58335122	1485568	0	+	0.58	(0.523,0.58]	chr3	159950	10	INTRON	INTRON	PXK	ENSG00000168297.16	ENST00000302779.9:ENST00000468776.5:ENST00000383716.7:ENST00000356151.7:ENST00000463280.5:ENST00000383715.8:ENST00000484288.5:ENST00000479241.5:ENST00000477308.5:ENST00000491164.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	281	2	7.11514	7.44632	7.7775	3.43103e-4	3.37828e-5	0.0105984	0.00122993
chr16	16274259	16274343	6408427	0	+	0.357143	(0.33,0.36]	chr16	633349	2	SS5_PROX	SS5_PROX:INTRON	NOMO3	ENSG00000103226.19	ENST00000676846.1:ENST00000399336.9:ENST00000677912.1:ENST00000677777.1:ENST00000678192.1:ENST00000678393.1:ENST00000678538.1:ENST00000679086.1:ENST00000574894.2:ENST00000678080.1:ENST00000677260.1:ENST00000676550.1:ENST00000263012.10:ENST00000575225.5:ENST00000677781.1:ENST00000677163.1:ENST00000678148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	274	2	7.40481	7.446210000000001	7.48761	7.99864e-4	2.43638e-5	0.0167977	9.7031e-4
chr19	46978991	46979091	7275363	0	+	0.62	(0.58,1]	chr19	747275	412	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	275	2	7.05311	7.44575	7.83839	9.51865e-5	1.5843e-5	0.00545658	7.12006e-4
chr2	3269179	3269278	1080797	0	-	0.50505	(0.485,0.523]	chr2	117623	67	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	285	2	6.85388	7.44322	8.03256	0.00214661	1.91589e-6	0.0291055	1.61771e-4
chr11	68331872	68331972	4882276	0	+	0.62	(0.58,1]	chr11	470542	187	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	288	2	6.87088	7.443165	8.01545	6.24389e-5	2.92911e-5	0.00438983	0.00110673
chr15	20442339	20442438	6202470	0	-	0.494949	(0.485,0.523]	chr15	610287	13	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000424611.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	269	2	7.40929	7.442915	7.47654	7.18613e-4	1.15894e-5	0.0158219	5.71291e-4
chr8	142299685	142299785	4094037	0	-	0.54	(0.523,0.58]	chr8	388979	148	INTRON	INTRON	TSNARE1	ENSG00000171045.16	ENST00000524325.6:ENST00000307180.4:ENST00000520166.5:ENST00000519651.5:ENST00000662555.1	protein_coding	protein_coding	protein_coding	protein_coding	0	271	2	7.34013	7.44286	7.54559	5.51177e-4	1.66718e-5	0.0136794	7.38685e-4
chr2	235802688	235802787	1065637	0	+	0.454545	(0.45,0.485]	chr2	115712	28	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	285	2	7.0692	7.44257	7.81594	3.94969e-4	5.23249e-5	0.0113656	0.0016991
chr6	16687623	16687723	3103721	0	-	0.45	(0.419,0.45]	chr6	300893	197	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6:ENST00000495178.1:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	282	2	7.22756	7.44257	7.65758	9.37054e-4	6.01346e-5	0.0183114	0.00187442
chr16	29273112	29273212	6433568	0	+	0.44	(0.419,0.45]	chr16	636745	210	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	281	2	7.25293	7.442475	7.63202	9.82076e-4	5.59361e-5	0.0187972	0.00178124
chr16	1735266	1735366	6371291	0	+	0.57	(0.523,0.58]	chr16	628850	3	PRIMIRNA	PRIMIRNA:INTRON	MAPK8IP3:MIR3177	ENSG00000138834.15:ENSG00000265820.1	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1:ENST00000578255.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:processed_transcript:primary_miRNA	1	581	2	6.43479	7.442455	8.45012	8.40154e-5	1.27817e-6	0.00507439	1.23157e-4
chr18	69404705	69404805	7083214	0	+	0.44	(0.419,0.45]	chr18	722102	30	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	0	280	2	7.27785	7.4419249999999995	7.606	0.00103006	5.20883e-5	0.0192753	0.00169273
chr1	31937454	31937554	437548	0	-	0.62	(0.58,1]	chr1	52119	3	SS5_PROX	SS5_PROX:INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	273	2	7.06859	7.44162	7.81465	1.00693e-4	1.50295e-5	0.00560072	6.85908e-4
chr9	123902106	123902205	4401615	0	-	0.444444	(0.419,0.45]	chr9	419733	227	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	0	290	2	7.06522	7.441255	7.81729	6.97788e-4	9.52125e-5	0.0155984	0.00262959
chr21	35442669	35442769	7661386	0	-	0.49	(0.485,0.523]	chr21	801090	32	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000475045.6:ENST00000467692.5:ENST00000494829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	317	2	6.68077	7.440994999999999	8.20122	1.40343e-4	1.33825e-4	0.00659877	0.00338739
chr17	7176757	7176829	6847839	0	-	0.472222	(0.45,0.485]	chr17	693459	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1:ENST00000573596.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	1575	2	7.15541	7.44082	7.72623	1.82846e-5	2.37614e-8	0.0024612	9.28056e-6
chr13	75390890	75390990	5727093	0	-	0.39	(0.36,0.39]	chr13	561722	137	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	0	278	2	7.10637	7.4407049999999995	7.77504	0.00206645	9.98603e-6	0.0285954	5.13591e-4
chr17	57350122	57350222	6760706	0	+	0.38	(0.36,0.39]	chr17	682104	394	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	274	2	7.4187	7.4400200000000005	7.46134	0.00115896	2.54957e-5	0.0205897	0.00100208
chr10	34750498	34750598	4671163	0	-	0.45	(0.419,0.45]	chr10	445543	537	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	2	1036	2	5.52082	7.4395050000000005	9.35819	3.53362e-4	9.56385e-8	0.010744	2.26866e-5
chr7	143386099	143386196	3510766	0	+	0.515464	(0.485,0.523]	chr7	338486	15	INTRON	INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	272	2	7.28664	7.43926	7.59188	4.96381e-4	2.11074e-5	0.0129428	8.73346e-4
chr7	2048011	2048111	3530712	0	-	0.51	(0.485,0.523]	chr7	340995	330	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	287	2	6.80799	7.438945	8.0699	0.0023441	1.69432e-6	0.0305023	1.48592e-4
chr11	112254679	112254778	4942411	0	+	0.515152	(0.485,0.523]	chr11	476600	168	INTRON	INTRON	PTS	ENSG00000150787.8	ENST00000531673.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	276	2	7.18141	7.438865	7.69632	4.00919e-4	2.93111e-5	0.0114335	0.00110673
chr16	85231165	85231265	6515380	0	+	0.48	(0.45,0.485]	chr16	646377	34	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	280	2	7.14047	7.438739999999999	7.73701	4.62504e-4	4.22229e-5	0.0123892	0.0014546
chr18	80186038	80186137	7183140	0	-	0.565657	(0.523,0.58]	chr18	730364	25	INTRON	INTRON	PARD6G	ENSG00000178184.16	ENST00000353265.8:ENST00000470488.2:ENST00000463384.1	protein_coding	protein_coding	protein_coding	protein_coding	0	269	2	7.19977	7.43856	7.67735	0.00110271	5.65256e-6	0.020005	3.44583e-4
chr2	239371501	239371601	1392427	0	-	0.44	(0.419,0.45]	chr2	148759	182	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	622	2	6.48185	7.43846	8.39507	2.35504e-4	2.82465e-6	0.00866117	2.10652e-4
chr19	46978691	46978791	7275360	0	+	0.57	(0.523,0.58]	chr19	747275	409	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	279	2	7.11514	7.43834	7.76154	3.54552e-4	3.37828e-5	0.0107472	0.00122993
chr13	112972545	112972644	5655346	0	+	0.434343	(0.419,0.45]	chr13	555120	27	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	294	2	6.99178	7.437775	7.88377	6.1673e-4	1.16955e-4	0.0145945	0.00308693
chr10	132594624	132594724	4617407	0	+	0.59	(0.58,1]	chr10	441139	561	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	258	2	7.34763	7.43706	7.52649	2.99474e-4	3.06007e-6	0.00982269	2.22941e-4
chr6	127333652	127333751	3251498	0	-	0.414141	(0.39,0.419]	chr6	314978	14	INTRON	INTRON	ECHDC1	ENSG00000093144.19	ENST00000454859.8:ENST00000531967.5:ENST00000474289.6:ENST00000454591.6:ENST00000528402.5:ENST00000479525.6:ENST00000368291.6:ENST00000430841.6:ENST00000368289.6:ENST00000368292.10:ENST00000525745.5:ENST00000534442.5:ENST00000526299.5:ENST00000531582.1:ENST00000368287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	274	2	7.2472	7.43666	7.62612	0.00164562	1.58122e-5	0.0250898	7.12006e-4
chr16	85589530	85589629	6518968	0	+	0.464646	(0.45,0.485]	chr16	646396	328	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	271	2	7.19139	7.435485	7.67958	0.00134831	8.00408e-6	0.0224504	4.37868e-4
chr2	158639335	158639434	936799	0	+	0.525253	(0.523,0.58]	chr2	103450	47	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000452162.5:ENST00000421462.5:ENST00000494945.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	273	2	7.2254	7.435005	7.64461	4.50547e-4	2.39394e-5	0.0121972	9.57041e-4
chr17	73310780	73310880	6969819	0	-	0.69	(0.58,1]	chr17	710632	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CDC42EP4	ENSG00000179604.10	ENST00000335793.4:ENST00000439510.2:ENST00000581014.1:ENST00000580315.1:ENST00000579611.1	protein_coding	protein_coding	protein_coding	protein_coding	0	262	2	7.26949	7.434725	7.59996	1.66865e-4	7.53179e-6	0.00722822	4.20943e-4
chr4	110160079	110160179	2309437	0	-	0.39	(0.36,0.39]	chr4	232121	541	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	302	2	6.85846	7.434659999999999	8.01086	3.74524e-4	1.4518e-4	0.0111071	0.00359568
chr19	47229835	47229934	7392380	0	-	0.50505	(0.485,0.523]	chr19	768106	10	INTRON	INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	1	584	2	6.23978	7.4340399999999995	8.6283	5.6716e-5	2.61134e-6	0.00418207	1.99489e-4
chr13	98365837	98365937	5635908	0	+	0.47	(0.45,0.485]	chr13	553531	4	SS5_PROX	SS5_PROX:INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5:ENST00000595817.5:ENST00000595380.5:ENST00000596467.5:ENST00000600032.5:ENST00000601853.5:ENST00000596613.5:ENST00000599040.5:ENST00000602263.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	1131	2	6.29642	7.43402	8.57162	4.2957e-5	4.53179e-7	0.00362301	6.22319e-5
chr11	96166206	96166306	5111798	0	-	0.46	(0.45,0.485]	chr11	496566	723	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	0	306	2	6.77883	7.433475	8.08812	2.28027e-4	1.23522e-4	0.00851975	0.00321265
chr9	134368776	134368876	4261111	0	+	0.47	(0.45,0.485]	chr9	406311	418	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	275	2	7.22159	7.43324	7.64489	5.55566e-4	3.30215e-5	0.0137234	0.00120982
chr10	132756272	132756372	4619035	0	+	0.52	(0.485,0.523]	chr10	441201	24	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	0	267	2	7.30303	7.43295	7.56287	8.89361e-4	8.79998e-6	0.0177608	4.68141e-4
chr8	28140086	28140185	3782522	0	+	0.424242	(0.419,0.45]	chr8	364459	18	INTRON	INTRON	ELP3	ENSG00000134014.17	ENST00000521015.5:ENST00000380353.8:ENST00000537665.2:ENST00000523687.5:ENST00000524103.5:ENST00000256398.13:ENST00000518112.5:ENST00000519261.5:ENST00000520110.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	276	2	7.35015	7.4329350000000005	7.51572	0.00121474	4.23276e-5	0.0211053	0.00145731
chr2	231046182	231046281	1047586	0	+	0.383838	(0.36,0.39]	chr2	114051	44	INTRON	INTRON	C2orf72	ENSG00000204128.6	ENST00000373640.5:ENST00000477463.1:ENST00000463834.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	290	2	7.00087	7.43239	7.86391	4.97447e-4	9.70744e-5	0.012963	0.00267267
chr2	3269674	3269773	1080802	0	-	0.464646	(0.45,0.485]	chr2	117623	72	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	288	2	6.7992	7.431509999999999	8.06382	0.00282996	2.35915e-6	0.033746	1.86715e-4
chr7	116961513	116961612	3451893	0	+	0.50505	(0.485,0.523]	chr7	334376	18	INTRON	INTRON	ST7:ST7-OT4:ENSG00000288635	ENSG00000004866.22:ENSG00000214188.9:ENSG00000288635.1	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000466018.5:ENST00000421345.5:ENST00000471110.5:ENST00000470996.4:ENST00000397751.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	0	276	2	6.9556	7.43088	7.90616	0.00176368	2.89951e-6	0.0260917	2.14994e-4
chr10	31918328	31918428	4661730	0	-	0.39	(0.36,0.39]	chr10	444985	74	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9	protein_coding	protein_coding	protein_coding	protein_coding	0	275	2	7.13106	7.43068	7.7303	0.0019751	1.14274e-5	0.0278911	5.65297e-4
chr8	47882397	47882497	3973154	0	-	0.47	(0.45,0.485]	chr8	380026	3	SS3_PROX	SS3_PROX:INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	1	734	2	5.58709	7.4298399999999996	9.27259	4.78377e-4	4.4303e-8	0.0126479	1.39597e-5
chr13	113538062	113538161	5658662	0	+	0.444444	(0.419,0.45]	chr13	555722	29	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	274	2	7.26169	7.429805	7.59792	0.00192168	2.06117e-5	0.0274718	8.58121e-4
chr11	112254579	112254679	4942410	0	+	0.49	(0.485,0.523]	chr11	476600	167	INTRON	INTRON	PTS	ENSG00000150787.8	ENST00000531673.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	268	2	7.36081	7.42974	7.49867	5.99913e-4	1.67181e-5	0.0143535	7.38685e-4
chr13	112872975	112873072	5654402	0	+	0.56701	(0.523,0.58]	chr13	555052	8	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000471555.5:ENST00000415301.2:ENST00000419631.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	700	2	5.82315	7.4283	9.03345	2.49052e-4	5.98655e-8	0.00893461	1.6646e-5
chr14	91111115	91111213	5898436	0	+	0.418367	(0.39,0.419]	chr14	576284	27	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000521334.5:ENST00000522837.5:ENST00000518871.5	protein_coding	protein_coding	protein_coding	protein_coding	0	273	2	7.37039	7.42813	7.48587	0.0010565	3.37134e-5	0.0195243	0.0012296
chr2	11789249	11789347	722491	0	+	0.520408	(0.485,0.523]	chr2	84431	4	INTRON	INTRON	LPIN1	ENSG00000134324.12	ENST00000449576.6:ENST00000425416.6:ENST00000396097.5:ENST00000396099.5:ENST00000256720.6:ENST00000674199.1:ENST00000404113.6:ENST00000464953.2:ENST00000454151.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	266	2	7.34648	7.428	7.50952	8.15285e-4	1.04342e-5	0.016997	5.30224e-4
chr17	80561874	80561974	6809071	0	+	0.37	(0.36,0.39]	chr17	687806	157	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	274	2	7.14325	7.427630000000001	7.71201	0.00193144	1.20737e-5	0.0275437	5.87067e-4
chr12	23723596	23723695	5386252	0	-	0.30303	(0.29,0.33]	chr12	528148	577	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000537393.5:ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000535530.5:ENST00000536629.5:ENST00000536911.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	273	2	7.00401	7.427155	7.8503	0.00139153	3.91766e-6	0.022808	2.66734e-4
chr15	20442139	20442239	6202468	0	-	0.5	(0.485,0.523]	chr15	610287	11	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000424611.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	266	2	7.38866	7.427015	7.46537	7.49083e-4	1.2008e-5	0.0161585	5.85397e-4
chr2	127496548	127496648	1266280	0	-	0.48	(0.45,0.485]	chr2	136446	4	SS3_PROX	SS3_PROX:INTRON	IWS1	ENSG00000163166.15	ENST00000295321.9	protein_coding	protein_coding	protein_coding	protein_coding	0	268	2	7.39019	7.42666	7.46313	9.17281e-4	1.57306e-5	0.0180726	7.09232e-4
chr16	89306740	89306840	6659879	0	-	0.68	(0.58,1]	chr16	666665	10	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1:ENST00000647539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	256	2	7.34763	7.425765	7.5039	2.99474e-4	3.31459e-6	0.00982269	2.35778e-4
chr9	135838860	135838959	4431135	0	-	0.484848	(0.45,0.485]	chr9	423507	109	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	268	2	7.26075	7.4257550000000005	7.59076	0.00117955	1.0574e-5	0.020761	5.35058e-4
chr16	1740394	1740494	6371343	0	+	0.59	(0.58,1]	chr16	628852	3	SS3_PROX	SS3_PROX:INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	256	2	7.2914	7.4255700000000004	7.55974	3.40674e-4	2.72008e-6	0.010549	2.04763e-4
chr2	3296598	3296698	1081073	0	-	0.6	(0.58,1]	chr2	117633	139	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	260	2	7.26949	7.425405	7.58132	1.74291e-4	7.53179e-6	0.00740243	4.20943e-4
chr2	148051545	148051644	913667	0	+	0.444444	(0.419,0.45]	chr2	102525	68	INTRON	INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000638130.1:ENST00000637308.1:ENST00000473478.5:ENST00000635796.1:ENST00000637997.1:ENST00000470063.5:ENST00000638043.2:ENST00000638090.1:ENST00000637445.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	299	2	6.88226	7.4250799999999995	7.9679	5.27191e-4	1.58518e-4	0.0133783	0.00384084
chr13	77326173	77326273	5734520	0	-	0.56	(0.523,0.58]	chr13	562331	3	SS5_PROX	SS5_PROX:INTRON	MYCBP2	ENSG00000005810.20	ENST00000683823.1:ENST00000684354.1:ENST00000682321.1:ENST00000695079.1:ENST00000683697.1:ENST00000357337.11:ENST00000544440.7:ENST00000695080.1:ENST00000695081.1:ENST00000695090.1:ENST00000695091.1:ENST00000695094.1:ENST00000695095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	266	2	7.40014	7.424705	7.44927	6.69765e-4	1.37794e-5	0.0152294	6.44262e-4
chr2	232899574	232899673	1383834	0	-	0.444444	(0.419,0.45]	chr2	147952	43	INTRON	INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000416114.3:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	276	2	7.10949	7.424365	7.73924	0.00251897	1.35996e-5	0.031696	6.39223e-4
chr6	166930291	166930375	3301779	0	-	0.5	(0.485,0.523]	chr6	319709	1	INTRON	INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000510083.1:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000467705.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	988	2	7.22395	7.42417	7.62439	1.20918e-5	7.22501e-6	0.00201865	4.09005e-4
chr2	233165023	233165123	1058276	0	+	0.45	(0.419,0.45]	chr2	115120	2	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493078.1:ENST00000472517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	273	2	7.419	7.424165	7.42933	0.00142109	3.4701e-5	0.023055	0.00125791
chr17	77214897	77214994	6803123	0	+	0.525773	(0.523,0.58]	chr17	686684	10	UTR3	UTR3:EXON_MRNA:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	2	770	2	5.86354	7.42413	8.98472	2.67634e-5	1.78793e-6	0.00293676	1.54304e-4
chr16	1507816	1507916	6370023	0	+	0.57	(0.523,0.58]	chr16	628650	1	SS5_PROX	SS5_PROX:INTRON	TELO2	ENSG00000100726.15	ENST00000262319.11:ENST00000568240.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	267	2	7.34013	7.42398	7.50783	5.95022e-4	1.66718e-5	0.0143364	7.38685e-4
chr10	132565648	132565748	4617117	0	+	0.48	(0.45,0.485]	chr10	441139	271	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	269	2	7.16752	7.42355	7.67958	0.0014116	8.00408e-6	0.0229261	4.37868e-4
chr9	105394372	105394471	4207112	0	+	0.464646	(0.45,0.485]	chr9	399580	46	UTR3	UTR3:EXON_MRNA:INTRON	SLC44A1	ENSG00000070214.16	ENST00000374724.1:ENST00000374723.5:ENST00000470972.5:ENST00000374720.8:ENST00000436716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	342	2	6.46019	7.42304	8.38589	3.07362e-4	1.24045e-4	0.00618972	0.00618726
chr16	29270813	29270913	6433545	0	+	0.55	(0.523,0.58]	chr16	636745	187	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	315	2	6.64525	7.423019999999999	8.20079	1.42232e-4	1.40789e-4	0.0066525	0.00351181
chr15	22558190	22558290	6059856	0	+	0.51	(0.485,0.523]	chr15	594971	7	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	265	2	7.31402	7.422560000000001	7.5311	8.70042e-4	9.74032e-6	0.0175759	5.03958e-4
chr16	1727253	1727351	6371208	0	+	0.571429	(0.523,0.58]	chr16	628837	22	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000685565.1:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	265	2	7.39858	7.422495	7.44641	7.41711e-4	1.18895e-5	0.0160724	5.81984e-4
chr21	43974370	43974469	7625535	0	+	0.373737	(0.36,0.39]	chr21	796959	25	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000398063.6:ENST00000398058.5:ENST00000546158.1:ENST00000479117.5:ENST00000467358.5:ENST00000484865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	279	2	6.97612	7.42248	7.86884	0.00261876	7.51855e-6	0.0324697	4.20763e-4
chr1	1222943	1223043	380416	0	-	0.55	(0.523,0.58]	chr1	42842	3	SS5_PROX	SS5_PROX:INTRON	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000403997.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	579	2	6.61957	7.421915	8.22426	1.35384e-4	6.85061e-7	0.00645756	8.16559e-5
chr2	171022074	171022173	1312780	0	-	0.444444	(0.419,0.45]	chr2	140568	68	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	624	2	6.05935	7.421405	8.78346	1.11915e-4	1.0206e-5	0.00590007	5.20992e-4
chr16	58539498	58539582	6598972	0	-	0.321429	(0.29,0.33]	chr16	659988	2	SS5_PROX	SS5_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000568917.1:ENST00000563283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	271	2	7.18955	7.420769999999999	7.65199	3.69424e-4	3.15128e-5	0.0110404	0.00116717
chr12	26649192	26649291	5399736	0	-	0.444444	(0.419,0.45]	chr12	528625	168	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	3	2456	2	6.76141	7.42059	8.07977	5.68215e-6	2.73604e-7	0.0014489	4.43113e-5
chr16	85426720	85426820	6517338	0	+	0.4	(0.39,0.419]	chr16	646391	674	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	277	2	7.18397	7.4205000000000005	7.65703	7.65486e-4	5.80168e-5	0.0163688	0.00182637
chr9	14838453	14838553	4280099	0	-	0.36	(0.33,0.36]	chr9	408973	131	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	810	2	5.66163	7.418699999999999	9.17577	2.5948e-5	5.83438e-6	0.00292072	3.51962e-4
chr18	80186237	80186336	7183142	0	-	0.555556	(0.523,0.58]	chr18	730364	27	INTRON	INTRON	PARD6G	ENSG00000178184.16	ENST00000353265.8:ENST00000470488.2:ENST00000463384.1	protein_coding	protein_coding	protein_coding	protein_coding	0	264	2	7.29153	7.41846	7.54539	9.18957e-4	8.65732e-6	0.0180726	4.62898e-4
chr14	49630688	49630788	5971140	0	-	0.39	(0.36,0.39]	chr14	585048	9	INTRON	INTRON	DNAAF2	ENSG00000165506.15	ENST00000298292.13:ENST00000406043.3	protein_coding	protein_coding	protein_coding	protein_coding	0	273	2	7.27455	7.4181799999999996	7.56181	8.85298e-4	4.41219e-5	0.0177354	0.00150124
chr8	726857	726956	3932999	0	-	0.454545	(0.45,0.485]	chr8	376060	105	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	267	2	7.21489	7.417935	7.62098	0.00128871	9.62e-6	0.0219081	4.98808e-4
chr17	76547894	76547992	6977084	0	-	0.316327	(0.29,0.33]	chr17	712268	16	INTRON	INTRON	CYGB:ENSG00000267546	ENSG00000161544.10:ENSG00000267546.2	ENST00000589145.1:ENST00000589963.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	272	2	6.97648	7.41765	7.85882	0.00146996	3.81142e-6	0.0235479	2.62442e-4
chr12	122095162	122095262	5343540	0	+	0.54	(0.523,0.58]	chr12	521864	155	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	278	2	7.04168	7.41748	7.79328	3.32134e-4	4.24161e-5	0.0103819	0.00145737
chr2	148071269	148071368	913868	0	+	0.363636	(0.36,0.39]	chr2	102540	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000473478.5:ENST00000635796.1:ENST00000637997.1:ENST00000470063.5:ENST00000638043.2:ENST00000638090.1:ENST00000637445.1:ENST00000636620.1:ENST00000478804.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	276	2	7.18455	7.41722	7.64989	7.49125e-4	5.73017e-5	0.0161585	0.00181133
chr10	44968964	44969064	4483218	0	+	0.44	(0.419,0.45]	chr10	428600	87	INTRON	INTRON	RASSF4	ENSG00000107551.21	ENST00000489171.5:ENST00000340258.10:ENST00000427758.5:ENST00000483709.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	278	2	7.17545	7.416515	7.65758	9.37054e-4	6.97411e-5	0.0183114	0.00209831
chr1	808229	808329	379592	0	-	0.42	(0.419,0.45]	chr1	42663	297	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000634337.2:ENST00000635509.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	271	2	7.26169	7.414804999999999	7.56792	0.00192168	2.25033e-5	0.0274718	9.16205e-4
chr16	12261642	12261742	6392485	0	+	0.64	(0.58,1]	chr16	631965	616	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	269	2	6.82104	7.41456	8.00808	9.78215e-4	5.41963e-7	0.0187475	6.98748e-5
chr12	49004841	49004940	5223292	0	+	0.474747	(0.45,0.485]	chr12	506970	58	INTRON	INTRON	DDN-AS1	ENSG00000257913.3	ENST00000552933.2:ENST00000547866.1:ENST00000552284.1:ENST00000547395.1	lncRNA	lncRNA	lncRNA	lncRNA	0	274	2	7.14047	7.4139800000000005	7.68749	5.10466e-4	4.22229e-5	0.0131229	0.0014546
chr22	20122579	20122638	7686867	0	+	0.627119	(0.58,1]	chr22	804210	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000488484.1:ENST00000331821.7:ENST00000411892.5:ENST00000423859.5:ENST00000418705.2:ENST00000448394.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	254	2	7.35862	7.41397	7.46932	2.92006e-4	3.74461e-6	0.00970248	2.5891e-4
chr1	246233023	246233123	703115	0	-	0.44	(0.419,0.45]	chr1	82422	394	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	279	2	6.96685	7.413285	7.85972	0.00323624	9.51388e-6	0.0363264	4.9668e-4
chr19	33202986	33203086	7240902	0	+	0.63	(0.58,1]	chr19	741408	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LRP3	ENSG00000130881.14	ENST00000592484.5:ENST00000253193.9:ENST00000590275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	254	2	7.24478	7.413130000000001	7.58148	3.78937e-4	2.51802e-6	0.011147	1.94522e-4
chr4	106198653	106198752	2302245	0	-	0.272727	[0,0.29]	chr4	231472	35	INTRON	INTRON	TBCK	ENSG00000145348.17	ENST00000273980.10:ENST00000394708.7:ENST00000510927.5:ENST00000361687.8:ENST00000394706.7:ENST00000467183.6:ENST00000514689.5:ENST00000515705.5:ENST00000511011.5:ENST00000506615.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	258	2	7.34085	7.413085	7.48532	3.52875e-4	7.65541e-6	0.0107365	4.25586e-4
chr22	32671658	32671758	7791375	0	-	0.54	(0.523,0.58]	chr22	817442	414	INTRON	INTRON	SYN3	ENSG00000185666.15	ENST00000358763.7:ENST00000462268.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	294	2	6.6256	7.41303	8.20046	0.00333843	1.00936e-6	0.0368376	1.05357e-4
chr16	8683950	8684050	6381229	0	+	0.53	(0.523,0.58]	chr16	631147	5	INTRON	INTRON	ABAT	ENSG00000183044.12	ENST00000564714.5:ENST00000268251.13:ENST00000563992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	275	2	6.88325	7.412845000000001	7.94244	0.00204616	2.37532e-6	0.0283511	1.87465e-4
chr1	19469705	19469805	412063	0	-	0.49	(0.485,0.523]	chr1	48151	200	INTRON	INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000459967.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	267	2	7.26104	7.41279	7.56454	5.24802e-4	2.28684e-5	0.0133335	9.27248e-4
chr19	15684719	15684815	7215728	0	+	0.447917	(0.419,0.45]	chr19	737233	11	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CYP4F12	ENSG00000186204.15	ENST00000518629.7:ENST00000550308.6:ENST00000517734.5:ENST00000324632.10:ENST00000550627.5:ENST00000546608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	276	2	7.20174	7.4125700000000005	7.6234	9.97729e-4	6.47219e-5	0.0189973	0.00198064
chr17	48999865	48999964	6750045	0	+	0.515152	(0.485,0.523]	chr17	680301	3	INTRON	INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000510023.5:ENST00000431824.2:ENST00000515586.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	1050	2	5.41483	7.41144	9.40805	1.05229e-5	2.32027e-6	0.00191058	1.84857e-4
chr13	75390990	75391090	5727094	0	-	0.45	(0.419,0.45]	chr13	561722	138	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	2	821	2	5.75507	7.41108	9.06709	6.4655e-5	6.2063e-6	0.00446811	3.67274e-4
chr19	735364	735441	7184605	0	+	0.649351	(0.58,1]	chr19	730570	3	SS5_PROX	SS5_PROX:INTRON	PALM	ENSG00000099864.18	ENST00000338448.10:ENST00000264560.11:ENST00000589012.5:ENST00000593172.5:ENST00000633534.1:ENST00000592155.5:ENST00000590161.2:ENST00000587513.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	317	2	6.51182	7.410715	8.30961	9.48877e-5	3.07459e-5	0.00310406	0.00262417
chr19	55240622	55240711	7407339	0	-	0.561798	(0.523,0.58]	chr19	771264	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPP6R1	ENSG00000105063.19	ENST00000412770.7:ENST00000587283.5:ENST00000591323.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	265	2	7.1144	7.41028	7.70616	0.00130498	5.14768e-6	0.0220198	3.22346e-4
chr5	883053	883152	2608207	0	-	0.626263	(0.58,1]	chr5	259476	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	644	2	5.66575	7.409965	9.15418	1.50751e-4	7.50797e-9	0.00684622	4.38489e-6
chrX	2225027	2225127	7966088	0	-	0.43	(0.419,0.45]	chrX	834328	34	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11	protein_coding	protein_coding	protein_coding	protein_coding	0	274	2	7.2403	7.409905	7.57951	0.00108124	5.79892e-5	0.0198009	0.00182637
chr9	131586748	131586846	4418984	0	-	0.561224	(0.523,0.58]	chr9	421909	18	INTRON	INTRON	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000372189.7:ENST00000683357.1:ENST00000372190.7	protein_coding	protein_coding	protein_coding	protein_coding	1	602	2	5.89763	7.409565000000001	8.9215	3.06687e-5	7.61099e-6	0.00310406	4.24099e-4
chr6	13659232	13659332	3097567	0	-	0.39	(0.36,0.39]	chr6	300672	4	SS3_PROX	SS3_PROX:INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	0	268	2	7.35723	7.409285000000001	7.46134	0.00130006	2.54957e-5	0.0220198	0.00100208
chr2	3269278	3269377	1080798	0	-	0.50505	(0.485,0.523]	chr2	117623	68	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	295	2	6.60829	7.409275	8.21026	0.00342137	1.06527e-6	0.0374749	1.08692e-4
chr4	6664812	6664910	2186185	0	-	0.653061	(0.58,1]	chr4	221877	24	INTRON	INTRON	LINC02482	ENSG00000251580.3	ENST00000647523.2:ENST00000667300.1	lncRNA	lncRNA	lncRNA	lncRNA	0	257	2	7.25604	7.409235	7.56243	1.82142e-4	7.89156e-6	0.00759001	4.34116e-4
chr11	46040872	46040972	5030013	0	-	0.47	(0.45,0.485]	chr11	486532	139	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000689695.1:ENST00000685188.1:ENST00000532883.5:ENST00000524497.5:ENST00000531959.5:ENST00000687985.1:ENST00000693122.1:ENST00000529734.5:ENST00000529782.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	270	2	7.20838	7.40913	7.60988	5.955e-4	3.43738e-5	0.0143364	0.00124793
chr5	14348998	14349097	2385422	0	+	0.383838	(0.36,0.39]	chr5	238535	119	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000512070.6:ENST00000509967.6:ENST00000513206.5:ENST00000515144.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	268	2	7.25981	7.408245	7.55668	0.00155805	1.92152e-5	0.0243306	8.19063e-4
chr7	2047912	2048011	3530711	0	-	0.484848	(0.45,0.485]	chr7	340995	329	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	285	2	6.75181	7.407814999999999	8.06382	0.00308946	2.35915e-6	0.0354967	1.86715e-4
chr11	68331673	68331772	4882274	0	+	0.50505	(0.485,0.523]	chr11	470542	185	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	300	2	6.73756	7.407655	8.07775	1.81848e-4	1.13097e-4	0.00759001	0.0030016
chr9	37296798	37296898	4150063	0	+	0.55	(0.523,0.58]	chr9	394666	121	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5:ENST00000463625.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	262	2	7.35671	7.40723	7.45775	8.06717e-4	1.14664e-5	0.0168786	5.66227e-4
chr11	46114021	46114121	5030761	0	-	0.45	(0.419,0.45]	chr11	486583	214	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000689695.1:ENST00000685188.1:ENST00000532883.5:ENST00000524497.5:ENST00000693122.1:ENST00000529734.5:ENST00000529782.5:ENST00000688222.1:ENST00000690039.1:ENST00000533757.5:ENST00000525438.5:ENST00000692265.1:ENST00000527782.5:ENST00000532010.5:ENST00000528893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	282	2	7.05083	7.407105	7.76338	7.71033e-4	9.91396e-5	0.0164417	0.00271927
chr13	33643182	33643282	5689006	0	-	0.49	(0.485,0.523]	chr13	558276	78	INTRON	INTRON	ENSG00000230490	ENSG00000230490.4	ENST00000686875.1:ENST00000454681.2:ENST00000655117.2:ENST00000690486.1:ENST00000654283.1:ENST00000653421.1	lncRNA	lncRNA	lncRNA	lncRNA	0	268	2	7.01065	7.4070800000000006	7.80351	0.00158449	4.05085e-6	0.0245893	2.73332e-4
chr7	47474208	47474308	3588550	0	-	0.41	(0.39,0.419]	chr7	346123	211	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	729	2	6.01542	7.406420000000001	8.79742	2.69706e-4	4.2994e-7	0.00933737	6.01222e-5
chrX	9568441	9568541	7843484	0	+	0.5	(0.485,0.523]	chrX	822423	75	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	263	2	7.18832	7.406355	7.62439	0.00111738	7.22501e-6	0.0202011	4.09005e-4
chr17	49763092	49763191	6926427	0	-	0.555556	(0.523,0.58]	chr17	705614	160	INTRON	INTRON	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5:ENST00000503855.5:ENST00000514018.5:ENST00000505159.5:ENST00000506156.1:ENST00000509347.5:ENST00000503720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	267	2	7.21206	7.406255	7.60045	4.93015e-4	2.49617e-5	0.0128889	9.86867e-4
chr12	122094562	122094662	5343534	0	+	0.5	(0.485,0.523]	chr12	521864	149	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	273	2	7.08258	7.4060500000000005	7.72952	3.74499e-4	3.97904e-5	0.0111071	0.00138788
chr9	135838460	135838560	4431131	0	-	0.45	(0.419,0.45]	chr9	423507	105	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	280	2	6.91127	7.4058399999999995	7.90041	0.00356503	8.42749e-6	0.0383188	4.54808e-4
chr2	78096841	78096941	1208418	0	-	0.43	(0.419,0.45]	chr2	130071	1566	INTRON	INTRON	ENSG00000227088	ENSG00000227088.2	ENST00000667782.1	lncRNA	lncRNA	lncRNA	lncRNA	1	607	2	6.23133	7.40576	8.58019	1.65387e-4	6.06696e-6	0.00722388	3.60553e-4
chr1	44241414	44241514	459585	0	-	0.52	(0.485,0.523]	chr1	55300	1	SS5_PROX	SS5_PROX:INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	262	2	7.36772	7.4052500000000006	7.44278	7.81266e-4	1.29007e-5	0.016579	6.14919e-4
chr17	82006041	82006140	6815357	0	+	0.606061	(0.58,1]	chr17	688641	18	EXON_MRNA	EXON_MRNA:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	6606	2	6.75188	7.405215	8.05855	9.02689e-7	1.52712e-11	8.21153e-4	1.28237e-7
chr13	93276407	93276507	5618276	0	+	0.47	(0.45,0.485]	chr13	553052	484	INTRON	INTRON	GPC6	ENSG00000183098.11	ENST00000377047.9	protein_coding	protein_coding	protein_coding	protein_coding	0	265	2	7.1795	7.4052050000000005	7.63091	0.00137948	9.3252e-6	0.0226729	4.88957e-4
chr12	772362	772462	5148823	0	+	0.37	(0.36,0.39]	chr12	500570	177	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	0	317	2	6.62423	7.405150000000001	8.18607	2.77822e-4	2.6631e-4	0.00925214	0.00576679
chr7	29215682	29215782	3334500	0	+	0.38	(0.36,0.39]	chr7	322843	173	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5:ENST00000222792.11:ENST00000409350.5:ENST00000409964.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	268	2	7.20271	7.404875	7.60704	0.0017314	1.65363e-5	0.0257605	7.34904e-4
chr8	133288159	133288259	4084206	0	-	0.63	(0.58,1]	chr8	388352	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000676005.1:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1:ENST00000674839.1:ENST00000676064.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	372	2	6.15376	7.404555	8.65535	2.90409e-4	1.32295e-5	0.0059241	0.00211359
chr17	57351922	57352022	6760724	0	+	0.41	(0.39,0.419]	chr17	682104	412	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	280	2	6.87603	7.404434999999999	7.93284	0.00322454	6.27264e-6	0.0362983	3.69646e-4
chr1	5868593	5868692	386499	0	-	0.515152	(0.485,0.523]	chr1	44370	3	INTRON	INTRON	NPHP4	ENSG00000131697.18	ENST00000378156.9:ENST00000478423.6:ENST00000489180.6:ENST00000378169.7:ENST00000468253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	263	2	7.16424	7.404285	7.64433	0.0011719	6.77655e-6	0.0206836	3.91906e-4
chr4	128858052	128858150	2132068	0	+	0.530612	(0.523,0.58]	chr4	216567	2	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	0	267	2	7.01022	7.404235	7.79825	0.0016001	3.81293e-6	0.0246878	2.62442e-4
chr11	112254978	112255078	4942414	0	+	0.51	(0.485,0.523]	chr11	476600	171	INTRON	INTRON	PTS	ENSG00000150787.8	ENST00000531673.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	263	2	7.34871	7.40417	7.45963	6.49227e-4	1.73678e-5	0.0149631	7.60727e-4
chr17	38728495	38728595	6729368	0	+	0.61	(0.58,1]	chr17	676371	30	UTR3	UTR3:EXON_MRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5	protein_coding	protein_coding	protein_coding	protein_coding	3	849	2	5.53826	7.40413	9.27	2.88963e-6	9.18568e-7	0.00112513	9.88909e-5
chr3	58334922	58335022	1485567	0	+	0.52	(0.485,0.523]	chr3	159950	9	INTRON	INTRON	PXK	ENSG00000168297.16	ENST00000302779.9:ENST00000468776.5:ENST00000383716.7:ENST00000356151.7:ENST00000463280.5:ENST00000383715.8:ENST00000484288.5:ENST00000479241.5:ENST00000477308.5:ENST00000491164.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	585	2	6.02922	7.403915	8.77861	4.10998e-5	5.22774e-6	0.0035538	3.2605e-4
chr22	31624714	31624805	7788312	0	-	0.56044	(0.523,0.58]	chr22	817184	5	INTRON	INTRON	PISD	ENSG00000241878.12	ENST00000460723.5:ENST00000439502.7:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5:ENST00000474017.5:ENST00000478893.5:ENST00000491342.1:ENST00000422020.5:ENST00000442379.1:ENST00000429683.1:ENST00000431201.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	264	2	7.29026	7.403815	7.51737	5.83644e-4	1.95191e-5	0.0141349	8.25524e-4
chr15	84766711	84766811	6174164	0	+	0.45	(0.419,0.45]	chr15	607320	15	INTRON	INTRON	ZNF592	ENSG00000166716.10	ENST00000560079.7	protein_coding	protein_coding	protein_coding	protein_coding	0	269	2	7.23929	7.403605	7.56792	0.00200016	2.25033e-5	0.0280981	9.16205e-4
chr8	433235	433335	3743663	0	+	0.48	(0.45,0.485]	chr8	359996	3	SS5_PROX	SS5_PROX:INTRON	FBXO25	ENSG00000147364.17	ENST00000518240.5:ENST00000352684.2:ENST00000382824.5:ENST00000350302.8:ENST00000276326.9:ENST00000524125.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	264	2	7.22649	7.40352	7.58055	0.00126021	1.09169e-5	0.0215793	5.4861e-4
chr7	74499701	74499801	3391824	0	+	0.4	(0.39,0.419]	chr7	327343	452	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	1	728	2	5.73623	7.402754999999999	9.06928	4.65824e-4	1.81994e-7	0.0124594	3.43389e-5
chr22	50730007	50730107	7755492	0	+	0.6	(0.58,1]	chr22	812811	3	SS5_PROX	SS5_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2:ENST00000659388.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	253	2	7.36034	7.401985	7.44363	2.40019e-4	5.48927e-6	0.00875172	3.37015e-4
chr18	80185839	80185938	7183138	0	-	0.565657	(0.523,0.58]	chr18	730364	23	INTRON	INTRON	PARD6G	ENSG00000178184.16	ENST00000353265.8:ENST00000470488.2:ENST00000463384.1	protein_coding	protein_coding	protein_coding	protein_coding	0	261	2	7.34605	7.4018999999999995	7.45775	8.24125e-4	1.14664e-5	0.0170688	5.66227e-4
chr4	101292031	101292131	2292599	0	-	0.57	(0.523,0.58]	chr4	230565	508	INTRON	INTRON	PPP3CA	ENSG00000138814.17	ENST00000512215.5:ENST00000394854.8:ENST00000323055.10:ENST00000394853.8:ENST00000507176.5:ENST00000529324.5:ENST00000525819.1	protein_coding	protein_coding	protein_coding	protein_coding	0	262	2	7.36443	7.40185	7.43927	6.83398e-4	1.54352e-5	0.0153809	6.98728e-4
chr11	14735881	14735981	4805941	0	+	0.42	(0.419,0.45]	chr11	460698	351	INTRON	INTRON	PDE3B	ENSG00000152270.9	ENST00000282096.9:ENST00000455098.2:ENST00000534317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	295	2	6.84938	7.401795	7.95421	5.40841e-4	1.73559e-4	0.0135788	0.0040962
chr4	2827048	2827138	2000390	0	+	0.455556	(0.45,0.485]	chr4	203975	9	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SH3BP2	ENSG00000087266.17	ENST00000503393.8:ENST00000504294.5:ENST00000508385.5:ENST00000511663.5:ENST00000512014.5:ENST00000435136.8:ENST00000511185.5:ENST00000511747.6:ENST00000356331.9:ENST00000515737.5:ENST00000515183.5:ENST00000505941.5:ENST00000510204.5:ENST00000515802.5:ENST00000504450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	271	2	6.96076	7.40154	7.84232	0.00209187	4.78623e-6	0.0287557	3.06337e-4
chrX	119842607	119842690	8096133	0	-	0.433735	(0.419,0.45]	chrX	844034	5	INTRON	INTRON	UPF3B	ENSG00000125351.13	ENST00000276201.7:ENST00000345865.6:ENST00000478840.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	271	2	7.27785	7.401425	7.525	0.00119436	5.20883e-5	0.020937	0.00169273
chr10	50754838	50754936	4488250	0	+	0.5	(0.485,0.523]	chr10	429413	2	UTR3	UTR3:EXON_MRNA:INTRON	ASAH2B	ENSG00000204147.11	ENST00000374007.5:ENST00000645350.1:ENST00000647317.2:ENST00000643505.1:ENST00000643851.1:ENST00000483649.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	261	2	7.29196	7.400740000000001	7.50952	9.09246e-4	1.04342e-5	0.0180048	5.30224e-4
chr8	30419452	30419552	3788514	0	+	0.42	(0.419,0.45]	chr8	364885	211	INTRON	INTRON	RBPMS	ENSG00000157110.16	ENST00000320203.8:ENST00000339877.8:ENST00000287771.9:ENST00000397323.9:ENST00000517860.5:ENST00000520161.5:ENST00000523115.5:ENST00000519647.5:ENST00000521816.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	794	2	6.42657	7.400735	8.3749	1.46399e-4	2.01314e-6	0.00675599	1.67291e-4
chr1	28458059	28458159	74009	0	+	0.38	(0.36,0.39]	chr1	8395	2	SS5_PROX	SS5_PROX:INTRON	PHACTR4	ENSG00000204138.13	ENST00000633371.1:ENST00000632202.1:ENST00000632421.1:ENST00000463428.5:ENST00000373839.8:ENST00000493669.2:ENST00000633167.1:ENST00000373836.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	266	2	7.31474	7.39891	7.48308	0.00140709	2.39075e-5	0.0229261	9.56905e-4
chr5	649607	649706	2378778	0	+	0.606061	(0.58,1]	chr5	237646	13	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	252	2	7.18431	7.398899999999999	7.61349	4.34792e-4	2.24706e-6	0.0119405	1.80805e-4
chr6	2209556	2209656	3084979	0	-	0.42	(0.419,0.45]	chr6	299526	337	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5	protein_coding	protein_coding	protein_coding	protein_coding	2	810	2	5.85337	7.398885	8.9444	8.20152e-5	4.59507e-6	0.00502313	2.97168e-4
chr3	129785511	129785611	1913682	0	-	0.38	(0.36,0.39]	chr3	194421	969	INTRON	INTRON	TMCC1	ENSG00000172765.18	ENST00000393238.8:ENST00000426664.6:ENST00000648771.1:ENST00000505616.5	protein_coding	protein_coding	protein_coding	protein_coding	0	266	2	7.30392	7.398875	7.49383	0.00143567	2.31584e-5	0.0232366	9.36605e-4
chr5	57186992	57187092	2423931	0	+	0.37	(0.36,0.39]	chr5	241800	102	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5	protein_coding	protein_coding	protein_coding	protein_coding	0	266	2	7.34672	7.398535000000001	7.45035	0.00132577	2.63375e-5	0.0222245	0.00102154
chr6	2268214	2268312	2824606	0	+	0.438776	(0.419,0.45]	chr6	277256	20	INTRON	INTRON	GMDS-DT	ENSG00000250903.10	ENST00000657072.1:ENST00000529893.6:ENST00000659523.1:ENST00000659643.1:ENST00000660978.1:ENST00000691004.1:ENST00000664738.1:ENST00000532124.6:ENST00000691547.1:ENST00000663428.1:ENST00000654526.1:ENST00000670895.1:ENST00000532564.8:ENST00000685772.1:ENST00000687264.1:ENST00000660533.1:ENST00000531092.6:ENST00000524770.6:ENST00000657589.1:ENST00000607519.2:ENST00000456943.6:ENST00000525811.5:ENST00000534441.5:ENST00000533653.5:ENST00000534468.1:ENST00000530346.6:ENST00000662000.1:ENST00000665610.1:ENST00000654970.1	lncRNA	lncRNA	lncRNA	lncRNA	1	749	2	6.13462	7.39833	8.66204	2.57021e-4	8.34734e-7	0.00907441	9.32677e-5
chr16	81544981	81545081	6508743	0	+	0.48	(0.45,0.485]	chr16	645911	491	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	777	2	5.7596	7.398235	9.03687	3.20528e-5	3.39511e-6	0.00316089	2.40562e-4
chr2	3296099	3296199	1081068	0	-	0.6	(0.58,1]	chr2	117633	134	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	253	2	7.32211	7.398185	7.47426	2.23584e-4	6.27279e-6	0.00845454	3.69646e-4
chr8	130284841	130284941	4082042	0	-	0.47	(0.45,0.485]	chr8	388157	379	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000521075.5:ENST00000524367.5:ENST00000520927.5:ENST00000524299.1:ENST00000521426.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	267	2	7.0418	7.397995	7.75419	0.00179449	6.32716e-6	0.0262815	3.72196e-4
chr6	10589113	10589213	2850438	0	+	0.52	(0.485,0.523]	chr6	278695	18	INTRON	INTRON	GCNT2	ENSG00000111846.20	ENST00000410107.5:ENST00000489225.5:ENST00000397423.7:ENST00000495262.7:ENST00000475577.5:ENST00000489819.5:ENST00000474518.1:ENST00000379597.7:ENST00000485764.1:ENST00000461400.1:ENST00000316170.9:ENST00000459872.1:ENST00000265012.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	265	2	7.22177	7.397740000000001	7.57371	5.15097e-4	2.58512e-5	0.0132022	0.0010125
chr1	247308274	247308374	709369	0	-	0.52	(0.485,0.523]	chr1	82907	4	SS5_PROX	SS5_PROX:INTRON	ZNF496	ENSG00000162714.13	ENST00000294753.8:ENST00000462139.1:ENST00000682384.1:ENST00000461277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	261	2	7.38471	7.397	7.40929	7.18613e-4	1.55038e-5	0.0158219	7.00888e-4
chr8	38770292	38770392	3802258	0	+	0.58	(0.523,0.58]	chr8	365828	125	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	566	2	6.22281	7.3961500000000004	8.56949	6.51851e-5	2.59881e-6	0.00448806	1.99205e-4
chr11	18011709	18011806	5015376	0	-	0.484536	(0.45,0.485]	chr11	484704	12	INTRON	INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528200.5:ENST00000532265.5:ENST00000529728.5:ENST00000530613.5:ENST00000532389.5:ENST00000530925.5:ENST00000533328.5:ENST00000532212.5:ENST00000524716.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	265	2	7.27324	7.39584	7.51844	7.1335e-4	2.82126e-5	0.0157644	0.00107564
chr6	169706759	169706848	3304948	0	-	0.370787	(0.36,0.39]	chr6	319985	7	INTRON	INTRON	PHF10	ENSG00000130024.15	ENST00000339209.9:ENST00000366780.8:ENST00000621772.4	protein_coding	protein_coding	protein_coding	protein_coding	0	271	2	7.18455	7.395535	7.60652	8.13425e-4	5.73017e-5	0.016997	0.00181133
chr21	45452723	45452823	7630790	0	+	0.42	(0.419,0.45]	chr21	797656	469	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	1	612	2	6.58458	7.395250000000001	8.20592	3.37086e-4	2.06023e-6	0.0105072	1.70028e-4
chr9	129619317	129619416	4251024	0	+	0.424242	(0.419,0.45]	chr9	404743	98	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	0	267	2	7.29464	7.39501	7.49538	0.00181153	2.78044e-5	0.0264638	0.00106588
chr20	58695092	58695191	7498634	0	+	0.50505	(0.485,0.523]	chr20	782002	1	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	756	2	6.04309	7.3948149999999995	8.74654	4.4029e-5	1.04285e-6	0.00367146	1.07117e-4
chr16	81615210	81615310	6509448	0	+	0.47	(0.45,0.485]	chr16	645921	43	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	584	2	6.09288	7.3947199999999995	8.69656	6.52457e-5	5.27723e-6	0.00448806	3.27891e-4
chr21	34748466	34748566	7615872	0	+	0.48	(0.45,0.485]	chr21	795408	2	INTRON	INTRON	LINC01426	ENSG00000234380.2	ENST00000420877.1	lncRNA	lncRNA	lncRNA	lncRNA	0	262	2	7.35891	7.394145	7.42938	9.74981e-4	1.74625e-5	0.0187475	7.63142e-4
chr10	24500180	24500280	4467520	0	+	0.47	(0.45,0.485]	chr10	427307	46	INTRON	INTRON	KIAA1217	ENSG00000120549.19	ENST00000376462.5:ENST00000376452.7:ENST00000430453.6:ENST00000458595.5:ENST00000376456.8:ENST00000376454.8:ENST00000438429.5:ENST00000696626.1:ENST00000307544.10:ENST00000376451.4:ENST00000396445.5:ENST00000396446.5:ENST00000460373.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	262	2	7.36941	7.39368	7.41795	9.55229e-4	1.809e-5	0.0184882	7.83029e-4
chr7	98317556	98317656	3648373	0	-	0.6	(0.58,1]	chr7	351234	2	SS3_PROX	SS3_PROX:INTRON	BAIAP2L1	ENSG00000006453.14	ENST00000005260.9:ENST00000462558.5:ENST00000473569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	268	2	6.95657	7.393545	7.83052	9.69786e-5	2.19702e-5	0.00549965	8.99734e-4
chr11	115317943	115318043	5129265	0	-	0.38	(0.36,0.39]	chr11	498106	306	INTRON	INTRON	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000541434.5:ENST00000543249.1:ENST00000540951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	266	2	7.16733	7.392115	7.6169	0.00184791	1.60561e-5	0.0268409	7.18732e-4
chr4	10103197	10103296	2195682	0	-	0.454545	(0.45,0.485]	chr4	222412	37	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	578	2	6.16335	7.391400000000001	8.61945	7.65739e-5	4.20665e-6	0.00489022	2.80131e-4
chr1	43980140	43980235	110957	0	+	0.6	(0.58,1]	chr1	13804	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	B4GALT2	ENSG00000117411.18	ENST00000498543.1:ENST00000434555.7:ENST00000372324.6:ENST00000481924.2:ENST00000497866.6:ENST00000485678.6:ENST00000356836.10:ENST00000309519.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	250	2	7.2088	7.389725	7.57065	4.11273e-4	2.61676e-6	0.0116246	1.99489e-4
chr18	80185640	80185739	7183136	0	-	0.50505	(0.485,0.523]	chr18	730364	21	INTRON	INTRON	PARD6G	ENSG00000178184.16	ENST00000353265.8:ENST00000470488.2:ENST00000463384.1	protein_coding	protein_coding	protein_coding	protein_coding	0	259	2	7.25823	7.38929	7.52035	9.72503e-4	1.00801e-5	0.0187452	5.15349e-4
chrX	48818712	48818812	7879399	0	+	0.49	(0.485,0.523]	chrX	826247	3	SS5_PROX	SS5_PROX:INTRON	HDAC6	ENSG00000094631.21	ENST00000376619.6:ENST00000477528.5:ENST00000334136.11:ENST00000643659.1:ENST00000643374.1:ENST00000644068.1:ENST00000643934.1:ENST00000647398.1:ENST00000486227.5:ENST00000645643.1:ENST00000486665.5:ENST00000470942.1:ENST00000480525.5:ENST00000498808.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	262	2	7.06368	7.387845	7.71201	0.00142841	5.44828e-6	0.0231443	3.35909e-4
chr10	45860487	45860587	4678174	0	-	0.44	(0.419,0.45]	chr10	446183	52	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000610690.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	0	266	2	7.379	7.38771	7.39642	0.00155644	3.70422e-5	0.0243306	0.00131524
chr13	113012165	113012265	5655745	0	+	0.64	(0.58,1]	chr13	555138	98	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	257	2	7.1289	7.387214999999999	7.64553	1.49982e-4	1.22303e-5	0.00681825	5.9245e-4
chr16	89429756	89429855	6661131	0	-	0.525253	(0.523,0.58]	chr16	666747	110	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	793	2	6.45433	7.387155	8.31998	1.10656e-4	2.39476e-7	0.0058719	4.07877e-5
chr2	120277514	120277614	887947	0	+	0.47	(0.45,0.485]	chr2	100428	234	INTRON	INTRON	RALB	ENSG00000144118.14	ENST00000447591.5:ENST00000420510.5:ENST00000431732.5:ENST00000272519.10:ENST00000631312.2:ENST00000470417.1:ENST00000412383.5:ENST00000449649.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	283	2	6.70281	7.38697	8.07113	0.00338129	2.30435e-6	0.0371948	1.83939e-4
chr6	1655478	1655578	3079424	0	-	0.47	(0.45,0.485]	chr6	299460	294	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	261	2	7.20319	7.386725	7.57026	0.00131807	1.12733e-5	0.0221729	5.59324e-4
chr13	113350648	113350748	5753439	0	-	0.61	(0.58,1]	chr13	564103	4	SS5_PROX	SS5_PROX:INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	0	255	2	7.17254	7.38625	7.59996	1.66865e-4	1.05286e-5	0.00722822	5.33404e-4
chr8	42956197	42956296	3809859	0	+	0.414141	(0.39,0.419]	chr8	366870	54	INTRON	INTRON	HOOK3	ENSG00000168172.9	ENST00000527306.1:ENST00000307602.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	279	2	6.98515	7.38603	7.78691	5.98107e-4	1.02541e-4	0.0143535	0.00278573
chr10	79104929	79105029	4532404	0	+	0.47	(0.45,0.485]	chr10	432420	353	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	276	2	6.97875	7.38573	7.79271	4.13779e-4	6.85584e-5	0.0116733	0.00207014
chr22	29827800	29827900	7784835	0	-	0.47	(0.45,0.485]	chr22	816449	2	SS3_PROX	SS3_PROX:INTRON	ASCC2	ENSG00000100325.15	ENST00000542393.5:ENST00000307790.8:ENST00000458594.5:ENST00000397771.6:ENST00000449900.6:ENST00000431535.5:ENST00000495967.5:ENST00000412689.5:ENST00000465667.6:ENST00000495681.5:ENST00000462454.1:ENST00000453160.5:ENST00000460313.1:ENST00000454854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	570	2	6.35618	7.3838550000000005	8.41153	1.1767e-4	2.25325e-6	0.00604154	1.80805e-4
chr6	169649675	169649775	3304360	0	-	0.54	(0.523,0.58]	chr6	319868	4	SS3_PROX	SS3_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	558	2	6.32739	7.3837600000000005	8.44013	8.58147e-5	1.83269e-6	0.00513437	1.56478e-4
chr4	2068096	2068195	1997257	0	+	0.515152	(0.485,0.523]	chr4	203663	41	UTR3	UTR3:EXON_MRNA	NAT8L	ENSG00000185818.8	ENST00000423729.3	protein_coding	protein_coding	protein_coding	protein_coding	1	662	2	7.22083	7.383430000000001	7.54603	5.44941e-4	9.52323e-8	0.0136434	2.26222e-5
chr21	42848037	42848136	7675452	0	-	0.353535	(0.33,0.36]	chr21	802287	44	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	0	304	2	6.48602	7.38332	8.28062	0.00521233	1.62463e-6	0.0475559	1.44518e-4
chr5	74661428	74661528	2455111	0	+	0.33	(0.29,0.33]	chr5	245132	205	INTRON	INTRON	HEXB	ENSG00000049860.14	ENST00000511181.5	protein_coding	protein_coding	protein_coding	protein_coding	0	264	2	7.14842	7.38259	7.61676	3.97661e-4	3.57575e-5	0.0114136	0.00128261
chr7	105733397	105733497	3670253	0	-	0.49	(0.485,0.523]	chr7	353945	419	INTRON	INTRON	ATXN7L1	ENSG00000146776.15	ENST00000419735.8	protein_coding	protein_coding	protein_coding	protein_coding	0	264	2	6.96956	7.38209	7.79462	0.00171649	4.16953e-6	0.025659	2.78321e-4
chr10	31928482	31928582	4661832	0	-	0.84	(0.58,1]	chr10	444986	4	SS5_PROX	SS5_PROX:INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9	protein_coding	protein_coding	protein_coding	protein_coding	0	249	2	7.37287	7.38198	7.39109	2.70977e-4	5.25408e-6	0.00934214	3.26574e-4
chr3	58009955	58010055	1483053	0	+	0.45	(0.419,0.45]	chr3	159572	7	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	271	2	7.14867	7.3817	7.61473	0.00101372	7.52409e-5	0.0191342	0.00222212
chr11	70741385	70741485	5061695	0	-	0.47	(0.45,0.485]	chr11	492701	235	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	267	2	7.12649	7.381355	7.63622	5.6521e-4	4.40415e-5	0.0138732	0.00149941
chr19	46978491	46978591	7275358	0	+	0.58	(0.523,0.58]	chr19	747275	407	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	264	2	7.1435	7.380890000000001	7.61828	4.75424e-4	3.0928e-5	0.0125953	0.00115425
chr7	583515	583613	3523921	0	-	0.602041	(0.58,1]	chr7	340376	38	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000400758.6:ENST00000430040.5	protein_coding	protein_coding	protein_coding	protein_coding	0	248	2	7.27989	7.380415	7.48094	3.49762e-4	3.59436e-6	0.0106878	2.5106e-4
chr5	654177	654274	2378825	0	+	0.536082	(0.523,0.58]	chr5	237653	6	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000499639.2	protein_coding	processed_transcript	protein_coding	processed_transcript	0	257	2	7.31359	7.38	7.44641	8.79392e-4	1.18895e-5	0.0176886	5.81984e-4
chr7	137969772	137969872	3720400	0	-	0.33	(0.29,0.33]	chr7	357307	360	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5	protein_coding	protein_coding	protein_coding	protein_coding	0	278	2	6.89019	7.379905	7.86962	2.33582e-4	7.82018e-5	0.00863036	0.00227541
chr13	75393090	75393190	5727115	0	-	0.34	(0.33,0.36]	chr13	561722	159	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	0	261	2	7.37761	7.37964	7.38167	9.90419e-4	2.61177e-5	0.0189228	0.00101706
chr16	12260942	12261042	6392478	0	+	0.62	(0.58,1]	chr16	631965	609	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	258	2	6.86794	7.3795	7.89106	8.82366e-4	8.29156e-7	0.0176886	9.27737e-5
chr17	355596	355696	6821849	0	-	0.56	(0.523,0.58]	chr17	689641	26	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	0	257	2	7.22327	7.379	7.53473	0.00105256	8.95943e-6	0.0194688	4.75569e-4
chr11	57303969	57304067	5038256	0	-	0.520408	(0.485,0.523]	chr11	488042	6	INTRON	INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	257	2	7.28081	7.378674999999999	7.47654	9.29716e-4	1.15894e-5	0.0182159	5.71291e-4
chr22	42648698	42648794	7821319	0	-	0.53125	(0.523,0.58]	chr22	820391	18	INTRON	INTRON	CYB5R3	ENSG00000100243.22	ENST00000693367.1:ENST00000352397.10:ENST00000361740.9:ENST00000692152.1:ENST00000693363.1:ENST00000689795.1:ENST00000686523.1:ENST00000407332.6:ENST00000687183.1:ENST00000691295.1:ENST00000690835.1:ENST00000689195.1:ENST00000688244.1:ENST00000690993.1:ENST00000689239.1:ENST00000692344.1:ENST00000686129.1:ENST00000466276.2:ENST00000693716.1:ENST00000688004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	271	2	6.99575	7.378645000000001	7.76154	3.54552e-4	4.88649e-5	0.0107472	0.00161739
chr13	113055902	113056002	5656196	0	+	0.65	(0.58,1]	chr13	555189	11	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	250	2	7.28283	7.378545	7.47426	2.23584e-4	7.19115e-6	0.00845454	4.08425e-4
chr7	105733897	105733996	3670258	0	-	0.444444	(0.419,0.45]	chr7	353945	424	INTRON	INTRON	ATXN7L1	ENSG00000146776.15	ENST00000419735.8	protein_coding	protein_coding	protein_coding	protein_coding	0	265	2	7.15805	7.377985000000001	7.59792	0.0023114	2.06117e-5	0.0302623	8.58121e-4
chr18	13262045	13262145	7023181	0	+	0.6	(0.58,1]	chr18	717514	427	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000590371.5:ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000590115.1:ENST00000677055.1:ENST00000399848.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	248	2	7.18431	7.37748	7.57065	4.34792e-4	2.61676e-6	0.0119405	1.99489e-4
chr22	25487924	25488024	7701423	0	+	0.56	(0.523,0.58]	chr22	805972	264	INTRON	INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000686640.1:ENST00000509460.3:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	294	2	6.70356	7.37743	8.0513	1.94511e-4	1.18392e-4	0.00785001	0.00311099
chr7	1008749	1008849	3526310	0	-	0.45	(0.419,0.45]	chr7	340566	78	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	264	2	7.35837	7.377395	7.39642	0.00161543	3.70422e-5	0.0248769	0.00131524
chr17	72556925	72557025	6963880	0	-	0.6	(0.58,1]	chr17	710389	225	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	611	2	7.2891	7.37661	7.46412	2.28899e-4	1.92221e-8	0.00852546	8.07069e-6
chr13	29520245	29520343	5677209	0	-	0.520408	(0.485,0.523]	chr13	557615	3	INTRON	INTRON	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	0	260	2	7.23498	7.376390000000001	7.5178	5.7709e-4	2.48079e-5	0.0140531	9.81945e-4
chr20	36857877	36857976	7557080	0	-	0.555556	(0.523,0.58]	chr20	789155	181	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	1	555	2	6.38973	7.3763250000000005	8.36292	1.0106e-4	1.48705e-6	0.00560277	1.36249e-4
chr17	80634760	80634859	6809802	0	+	0.494949	(0.485,0.523]	chr17	687816	86	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	258	2	7.12735	7.37587	7.62439	0.00126041	7.22501e-6	0.0215793	4.09005e-4
chr2	161327855	161327955	939078	0	+	0.32	(0.29,0.33]	chr2	103725	86	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	0	259	2	7.2556	7.375775	7.49595	5.11312e-4	2.57013e-5	0.0131326	0.00100922
chr20	44403178	44403278	7482946	0	+	0.57	(0.523,0.58]	chr20	779643	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000682427.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	259	2	7.06325	7.375135	7.68702	0.0014427	5.47796e-6	0.023287	3.37015e-4
chr16	85226602	85226702	6515334	0	+	0.61	(0.58,1]	chr16	646373	414	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	272	2	6.83512	7.374969999999999	7.91482	7.93839e-5	3.30003e-5	0.00494878	0.00120982
chr1	12582757	12582856	402430	0	-	0.545455	(0.523,0.58]	chr1	46222	17	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	1495	2	7.35365	7.374575	7.3955	9.22447e-6	4.79401e-8	0.00182338	1.46655e-5
chr22	19909784	19909884	7765142	0	-	0.55	(0.523,0.58]	chr22	813988	104	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	257	2	7.34013	7.374495	7.40886	7.2654e-4	1.66718e-5	0.0158761	7.38685e-4
chr2	102070114	102070214	863084	0	+	0.39	(0.36,0.39]	chr2	97778	3	SS5_PROX	SS5_PROX:INTRON	IL1R1	ENSG00000115594.12	ENST00000452403.5	protein_coding	protein_coding	protein_coding	protein_coding	0	262	2	7.37097	7.37449	7.37801	0.0012506	3.32759e-5	0.0215229	0.00121835
chr21	43974271	43974370	7625534	0	+	0.333333	(0.33,0.36]	chr21	796959	24	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000398063.6:ENST00000398058.5:ENST00000546158.1:ENST00000479117.5:ENST00000467358.5:ENST00000484865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	262	2	7.09118	7.374	7.65682	0.00171371	1.13393e-5	0.025659	5.61766e-4
chr15	78926939	78927024	6336935	0	-	0.470588	(0.45,0.485]	chr15	624691	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	CTSH	ENSG00000103811.18	ENST00000677011.1:ENST00000220166.10:ENST00000676639.1:ENST00000676510.1:ENST00000678727.1:ENST00000679334.1:ENST00000679017.1:ENST00000677810.1:ENST00000676763.1:ENST00000678886.1:ENST00000677921.1:ENST00000676596.1:ENST00000678114.1:ENST00000678487.1:ENST00000649928.2:ENST00000527715.6:ENST00000530010.6:ENST00000676671.1:ENST00000534533.6:ENST00000678283.1:ENST00000678841.1:ENST00000679125.1:ENST00000677316.1:ENST00000678031.1:ENST00000678644.1:ENST00000676808.1:ENST00000677207.1:ENST00000676486.1:ENST00000677238.1:ENST00000678281.1:ENST00000678799.1:ENST00000525807.6:ENST00000676588.1:ENST00000528191.6:ENST00000678817.1:ENST00000676880.1:ENST00000528741.6:ENST00000678415.1:ENST00000679172.1:ENST00000533777.5:ENST00000534237.6:ENST00000677448.1:ENST00000677534.1:ENST00000677367.1:ENST00000678397.1:ENST00000679047.1:ENST00000676865.1:ENST00000677102.1:ENST00000677874.1:ENST00000677254.1:ENST00000677936.1:ENST00000678940.1:ENST00000677789.1:ENST00000615999.5:ENST00000677049.1:ENST00000678033.1:ENST00000679211.1:ENST00000676850.1:ENST00000534268.6:ENST00000529861.6:ENST00000676738.1:ENST00000527138.6:ENST00000677320.1:ENST00000529612.6:ENST00000676668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	272	2	6.99423	7.37369	7.75315	4.47844e-4	6.5472e-5	0.0121721	0.00199814
chr20	62278764	62278862	7506896	0	+	0.510204	(0.485,0.523]	chr20	782713	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3:ENST00000620616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	752	2	5.71822	7.373685	9.02915	2.39546e-5	3.09423e-6	0.00282051	2.24768e-4
chrX	48818812	48818912	7879400	0	+	0.55	(0.523,0.58]	chrX	826247	4	SS5_PROX	SS5_PROX:INTRON	HDAC6	ENSG00000094631.21	ENST00000376619.6:ENST00000477528.5:ENST00000334136.11:ENST00000643659.1:ENST00000643374.1:ENST00000644068.1:ENST00000643934.1:ENST00000647398.1:ENST00000486227.5:ENST00000645643.1:ENST00000486665.5:ENST00000470942.1:ENST00000480525.5:ENST00000498808.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	256	2	7.33531	7.3735800000000005	7.41185	8.42028e-4	1.32752e-5	0.0172456	6.28604e-4
chr8	22560736	22560834	3771900	0	+	0.612245	(0.58,1]	chr8	362926	22	INTRON	INTRON	SORBS3	ENSG00000120896.14	ENST00000240123.12:ENST00000517500.5:ENST00000517535.5:ENST00000523402.5:ENST00000520563.3:ENST00000524057.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	327	2	6.34387	7.373329999999999	8.40279	1.61506e-4	2.45209e-5	0.00387712	0.00284264
chr6	15262958	15263058	2856676	0	+	0.52	(0.485,0.523]	chr6	279178	136	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	0	261	2	7.18141	7.372975	7.56454	5.24802e-4	2.93111e-5	0.0133335	0.00110673
chr15	60542907	60543007	6284948	0	-	0.56	(0.523,0.58]	chr15	619503	107	INTRON	INTRON	RORA	ENSG00000069667.16	ENST00000335670.11:ENST00000261523.9:ENST00000309157.8:ENST00000449337.6:ENST00000551975.5:ENST00000560004.5:ENST00000559343.1:ENST00000558234.1:ENST00000557822.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	776	2	6.6869	7.372805	8.05871	3.93821e-5	1.61742e-6	0.00349684	1.43996e-4
chr19	2335818	2335917	7189479	0	+	0.484848	(0.45,0.485]	chr19	731782	7	INTRON	INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	261	2	7.05488	7.372	7.68912	0.00175046	7.76752e-6	0.0259608	4.3011e-4
chr4	54058489	54058589	2238673	0	-	0.45	(0.419,0.45]	chr4	225543	88	INTRON	INTRON	CHIC2	ENSG00000109220.11	ENST00000263921.8:ENST00000512964.5:ENST00000510894.1:ENST00000509678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	264	2	7.31446	7.371895	7.42933	0.00142109	4.69009e-5	0.023055	0.00157191
chr1	8553382	8553481	393080	0	-	0.59596	(0.58,1]	chr1	45029	117	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000469251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	247	2	7.36952	7.371195	7.37287	2.84773e-4	5.25408e-6	0.00957277	3.26574e-4
chr1	15860305	15860404	48979	0	+	0.545455	(0.523,0.58]	chr1	4903	118	INTRON	INTRON	SPEN	ENSG00000065526.12	ENST00000673875.1:ENST00000375759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	257	2	7.30289	7.371079999999999	7.43927	6.83398e-4	1.87561e-5	0.0153809	8.04567e-4
chr16	14875606	14875690	6402501	0	+	0.345238	(0.33,0.36]	chr16	632480	2	SS5_PROX	SS5_PROX:INTRON	NOMO1	ENSG00000103512.16	ENST00000287667.12	protein_coding	protein_coding	protein_coding	protein_coding	0	259	2	7.25852	7.37074	7.48296	0.00124585	1.92465e-5	0.0214712	8.19985e-4
chr20	47257306	47257406	7569887	0	-	0.32	(0.29,0.33]	chr20	791018	75	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	748	2	6.04952	7.37044	8.69136	3.96475e-5	1.13051e-6	0.00350993	1.12814e-4
chr15	22964207	22964307	6204154	0	-	0.51	(0.485,0.523]	chr15	610573	158	INTRON	INTRON	CYFIP1	ENSG00000273749.5	ENST00000617928.5:ENST00000610365.4:ENST00000613006.4:ENST00000611832.4:ENST00000619037.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	256	2	7.34871	7.368684999999999	7.38866	7.49083e-4	1.73678e-5	0.0161585	7.60727e-4
chr9	129498964	129499061	4250766	0	+	0.597938	(0.58,1]	chr9	404726	1	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	251	2	6.97177	7.367735	7.7637	7.01049e-4	1.31287e-6	0.0156107	1.2535e-4
chr16	87744819	87744917	6656531	0	-	0.55102	(0.523,0.58]	chr16	665900	19	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	255	2	7.33531	7.367725	7.40014	8.42028e-4	1.37794e-5	0.0172456	6.44262e-4
chr10	102649111	102649211	4576515	0	+	0.64	(0.58,1]	chr10	437280	29	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	247	2	7.12119	7.3673400000000004	7.61349	5.01526e-4	2.24706e-6	0.0129939	1.80805e-4
chr18	79358554	79358653	7099871	0	+	0.626263	(0.58,1]	chr18	722963	100	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000426216.6:ENST00000307671.12:ENST00000490210.6:ENST00000590477.5:ENST00000589951.5:ENST00000588921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	250	2	7.20091	7.367275	7.53364	1.9478e-4	9.5483e-6	0.00785001	4.9724e-4
chr16	69071993	69072093	6481120	0	+	0.54	(0.523,0.58]	chr16	643682	312	INTRON	INTRON	TANGO6	ENSG00000103047.8	ENST00000261778.2:ENST00000562000.5:ENST00000568361.5:ENST00000561931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	255	2	7.34605	7.36719	7.38833	8.24125e-4	1.43066e-5	0.0170688	6.59187e-4
chr7	208497	208597	3305739	0	+	0.52	(0.485,0.523]	chr7	320156	2	SS3_PROX	SS3_PROX:INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6:ENST00000477004.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	256	2	7.13975	7.366855	7.59396	0.00122997	7.96614e-6	0.0212869	4.36503e-4
chr18	12607595	12607695	7122368	0	-	0.37	(0.36,0.39]	chr18	724805	188	INTRON	INTRON	SPIRE1	ENSG00000134278.16	ENST00000409402.9:ENST00000410092.7:ENST00000309836.9:ENST00000440472.6:ENST00000453447.6:ENST00000449797.5:ENST00000497844.6:ENST00000462226.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	272	2	6.84791	7.366585	7.88526	0.00329741	7.15307e-6	0.0368376	4.07092e-4
chr2	120277714	120277814	887949	0	+	0.5	(0.485,0.523]	chr2	100428	236	INTRON	INTRON	RALB	ENSG00000144118.14	ENST00000447591.5:ENST00000420510.5:ENST00000431732.5:ENST00000272519.10:ENST00000631312.2:ENST00000470417.1:ENST00000412383.5:ENST00000449649.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	269	2	6.79237	7.36559	7.93881	0.00241519	2.60587e-6	0.0309229	1.99489e-4
chr20	58688549	58688648	7498563	0	+	0.444444	(0.419,0.45]	chr20	781977	92	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1:ENST00000413559.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	1	615	2	5.8575	7.36548	8.87346	9.40738e-5	1.86881e-5	0.00541064	8.0353e-4
chr17	4853418	4853517	6672087	0	+	0.606061	(0.58,1]	chr17	668609	194	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	260	2	6.97312	7.365405	7.75769	1.15206e-4	2.07776e-5	0.00597643	8.62032e-4
chr16	89305943	89306043	6659871	0	-	0.72	(0.58,1]	chr16	666665	2	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1:ENST00000647539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	250	2	6.98601	7.365285	7.74456	6.79156e-4	1.40636e-6	0.0153241	1.31121e-4
chr2	208348623	208348723	1005527	0	+	0.4	(0.39,0.419]	chr2	110495	2	INTRON	INTRON	PIKFYVE	ENSG00000115020.17	ENST00000264380.9	protein_coding	protein_coding	protein_coding	protein_coding	0	261	2	7.15397	7.365215	7.57646	0.00195243	1.83361e-5	0.0276541	7.92657e-4
chr6	130867959	130868054	3260213	0	-	0.410526	(0.39,0.419]	chr6	315458	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000528282.5:ENST00000531410.5:ENST00000452150.6:ENST00000392427.7:ENST00000530757.5:ENST00000368128.6:ENST00000527411.5:ENST00000524581.5:ENST00000525271.5:ENST00000529208.5:ENST00000525193.5:ENST00000527659.5:ENST00000527017.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	285	2	6.82424	7.36515	7.90606	4.76211e-4	1.6132e-4	0.0126124	0.00387712
chr2	239085034	239085131	1389525	0	-	0.536082	(0.523,0.58]	chr2	148605	4	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000487617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	255	2	7.35233	7.3650649999999995	7.3778	7.7332e-4	1.60393e-5	0.0164417	7.1852e-4
chr5	649408	649508	2378776	0	+	0.57	(0.523,0.58]	chr5	237646	11	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	256	2	7.10179	7.364905	7.62802	0.00133774	6.63212e-6	0.0223452	3.85278e-4
chr13	113011666	113011766	5655740	0	+	0.66	(0.58,1]	chr13	555138	93	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	254	2	7.08391	7.36472	7.64553	1.49982e-4	1.42647e-5	0.00681825	6.59187e-4
chr16	29270613	29270713	6433543	0	+	0.53	(0.523,0.58]	chr16	636745	185	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	1	756	2	6.61858	7.36425	8.10992	4.56446e-5	1.36459e-6	0.00373545	1.28648e-4
chr16	85231265	85231365	6515381	0	+	0.49	(0.485,0.523]	chr16	646377	35	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	282	2	6.79219	7.363905	7.93562	2.44592e-4	9.60927e-5	0.00884339	0.00264781
chr2	171023429	171023529	1312795	0	-	0.37	(0.36,0.39]	chr2	140574	3	SS3_PROX	SS3_PROX:INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	262	2	7.2494	7.363524999999999	7.47765	0.00103755	4.74739e-5	0.019365	0.00158857
chr19	44946175	44946275	7269153	0	+	0.52	(0.485,0.523]	chr19	746443	1	SS5_PROX	SS5_PROX:INTRON	APOC4-APOC2:APOC2	ENSG00000224916.9:ENSG00000234906.11	ENST00000585685.5:ENST00000589057.5:ENST00000592257.5:ENST00000252490.7:ENST00000591597.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	974	2	5.02522	7.363405	9.70159	1.37992e-5	5.54041e-6	0.0014275	6.44623e-4
chr9	135836265	135836365	4431109	0	-	0.55	(0.523,0.58]	chr9	423507	83	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	255	2	7.13932	7.36331	7.5873	0.00124255	7.56432e-6	0.0214257	4.21779e-4
chr7	47474908	47475007	3588557	0	-	0.454545	(0.45,0.485]	chr7	346123	218	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	681	2	5.92045	7.36247	8.80449	2.42336e-4	2.10414e-7	0.0088035	3.77141e-5
chr10	124936159	124936259	4605608	0	+	0.46	(0.45,0.485]	chr10	440370	185	INTRON	INTRON	ENSG00000249456	ENSG00000249456.1	ENST00000508096.1	lncRNA	lncRNA	lncRNA	lncRNA	0	258	2	7.09341	7.36216	7.63091	0.00162663	9.3252e-6	0.0249683	4.88957e-4
chr17	81137799	81137899	6982880	0	-	0.48	(0.45,0.485]	chr17	713268	29	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	256	2	7.29422	7.361800000000001	7.42938	0.00110556	1.74625e-5	0.0200331	7.63142e-4
chr19	2336116	2336216	7189482	0	+	0.49	(0.485,0.523]	chr19	731782	10	INTRON	INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	893	2	5.84894	7.361715	8.87449	3.34431e-5	8.88843e-7	0.00320976	9.72493e-5
chr11	121478643	121478743	4953919	0	+	0.54	(0.523,0.58]	chr11	478663	4	SS5_PROX	SS5_PROX:INTRON	SORL1	ENSG00000137642.13	ENST00000260197.12:ENST00000532451.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	652	2	5.47717	7.361079999999999	9.24499	2.96207e-5	1.52426e-5	0.00223783	0.00111477
chr6	149333686	149333786	3035873	0	+	0.39	(0.36,0.39]	chr6	296046	119	INTRON	INTRON	TAB2	ENSG00000055208.19	ENST00000606202.1:ENST00000636456.1:ENST00000637181.2:ENST00000461481.5:ENST00000367456.5:ENST00000606797.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	260	2	7.32356	7.3610299999999995	7.3985	0.00120362	3.8237e-5	0.0210584	0.00134713
chr21	45500835	45500934	7631313	0	+	0.535354	(0.523,0.58]	chr21	797812	28	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	1	578	2	5.87602	7.36004	8.84406	3.62259e-5	8.16904e-6	0.0033207	4.45152e-4
chr6	41723260	41723360	3132626	0	-	0.62	(0.58,1]	chr6	305482	4	SS5_PROX	SS5_PROX:INTRON	TFEB	ENSG00000112561.19	ENST00000358871.6:ENST00000373033.6:ENST00000230323.8:ENST00000677531.1:ENST00000403298.9:ENST00000420312.6:ENST00000424495.2:ENST00000678831.1:ENST00000419396.6:ENST00000416140.6:ENST00000678871.1:ENST00000394283.5:ENST00000679237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	248	2	7.01408	7.35978	7.70548	6.3791e-4	1.6179e-6	0.0148365	1.43996e-4
chr19	15643506	15643606	7215388	0	+	0.5	(0.485,0.523]	chr19	737134	2	SS3_PROX	SS3_PROX:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	753	2	6.61302	7.359655	8.10629	4.56829e-5	1.5027e-6	0.00373545	1.372e-4
chr21	43752117	43752217	7624138	0	+	0.59	(0.58,1]	chr21	796774	2	SS3_PROX	SS3_PROX:INTRON	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000498040.5:ENST00000481512.5:ENST00000490666.5:ENST00000467908.1:ENST00000343528.10:ENST00000398078.7:ENST00000468392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	247	2	7.24245	7.3583549999999995	7.47426	2.23584e-4	8.27171e-6	0.00845454	4.48419e-4
chr19	7152927	7153027	7323796	0	-	0.53	(0.523,0.58]	chr19	756778	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	INSR	ENSG00000171105.14	ENST00000341500.9:ENST00000302850.10:ENST00000598216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	272	2	6.89924	7.357939999999999	7.81664	3.16525e-4	6.56505e-5	0.0101066	0.00199995
chr11	117810085	117810185	5134984	0	-	0.35	(0.33,0.36]	chr11	498595	77	INTRON	INTRON	FXYD2	ENSG00000137731.14	ENST00000514385.1:ENST00000532119.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	260	2	7.20845	7.357595	7.50674	7.70561e-4	4.37819e-5	0.0164417	0.00149507
chr13	113020944	113021044	5655834	0	+	0.42	(0.419,0.45]	chr13	555145	57	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	262	2	7.26544	7.35721	7.44898	0.00137138	5.39706e-5	0.0226056	0.00173477
chr2	235802984	235803083	1065640	0	+	0.474747	(0.45,0.485]	chr2	115712	31	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	257	2	7.27324	7.357060000000001	7.44088	8.30731e-4	2.82126e-5	0.0171232	0.00107564
chr16	58539414	58539498	6598971	0	-	0.511905	(0.485,0.523]	chr16	659988	1	SS5_PROX	SS5_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000568917.1:ENST00000563283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	254	2	7.31179	7.3553999999999995	7.39901	7.33641e-4	1.95061e-5	0.0159757	8.25524e-4
chr21	45474481	45474579	7631011	0	+	0.510204	(0.485,0.523]	chr21	797674	1	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	2	773	2	5.44682	7.35468	9.26254	1.44438e-5	7.58642e-6	0.00219359	4.22871e-4
chr4	4439308	4439408	2184984	0	-	0.36	(0.33,0.36]	chr4	221823	4	INTRON	INTRON	STX18	ENSG00000168818.10	ENST00000505286.5:ENST00000306200.7:ENST00000503861.5:ENST00000512195.5:ENST00000507908.5:ENST00000512780.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	261	2	7.15489	7.354185	7.55348	7.03256e-4	5.129e-5	0.0156243	0.00167326
chr2	3220640	3220740	1080307	0	-	0.49	(0.485,0.523]	chr2	117609	60	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000482570.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	600	2	6.95366	7.353795	7.75393	3.56163e-4	2.37088e-7	0.0107631	4.0648e-5
chr6	41723360	41723460	3132627	0	-	0.5	(0.485,0.523]	chr6	305483	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TFEB	ENSG00000112561.19	ENST00000358871.6:ENST00000373033.6:ENST00000230323.8:ENST00000677531.1:ENST00000403298.9:ENST00000420312.6:ENST00000424495.2:ENST00000678831.1:ENST00000419396.6:ENST00000416140.6:ENST00000678871.1:ENST00000394283.5:ENST00000679237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	260	2	6.91288	7.35375	7.79462	0.00191584	4.16953e-6	0.0274102	2.78321e-4
chr3	50052949	50053047	1468225	0	+	0.5	(0.485,0.523]	chr3	157177	43	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1:ENST00000446471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	665	2	5.99889	7.3537300000000005	8.70857	1.70278e-4	2.0059e-7	0.00729818	3.6561e-5
chr12	114678056	114678156	5510639	0	-	0.42	(0.419,0.45]	chr12	542612	4	SS3_PROX	SS3_PROX:INTRON	TBX3	ENSG00000135111.16	ENST00000349155.7:ENST00000257566.7:ENST00000548503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	260	2	7.33835	7.353535	7.36872	0.00158557	4.37892e-5	0.0245893	0.00149507
chr17	7112927	7113026	6847763	0	-	0.40404	(0.39,0.419]	chr17	693423	37	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	774	2	5.82134	7.353185	8.88503	7.00114e-5	4.32374e-6	0.00469276	2.84098e-4
chr4	2068295	2068394	1997259	0	+	0.474747	(0.45,0.485]	chr4	203663	43	UTR3	UTR3:EXON_MRNA	NAT8L	ENSG00000185818.8	ENST00000423729.3	protein_coding	protein_coding	protein_coding	protein_coding	0	332	2	6.16551	7.352925000000001	8.54034	0.00879664	5.02143e-7	0.0630845	6.65086e-5
chrX	48819090	48819179	7879403	0	+	0.494382	(0.485,0.523]	chrX	826248	3	INTRON	INTRON	HDAC6	ENSG00000094631.21	ENST00000376619.6:ENST00000477528.5:ENST00000334136.11:ENST00000643659.1:ENST00000643374.1:ENST00000644068.1:ENST00000643934.1:ENST00000647398.1:ENST00000486227.5:ENST00000645643.1:ENST00000486665.5:ENST00000470942.1:ENST00000480525.5:ENST00000498808.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	253	2	7.34871	7.352925	7.35714	7.98038e-4	1.73678e-5	0.0167692	7.60727e-4
chr2	197461552	197461649	984228	0	+	0.525773	(0.523,0.58]	chr2	108128	11	INTRON	INTRON	COQ10B	ENSG00000115520.9	ENST00000409398.5:ENST00000263960.7:ENST00000409010.1	protein_coding	protein_coding	protein_coding	protein_coding	0	252	2	7.26913	7.352055	7.43498	9.60886e-4	1.23313e-5	0.0185615	5.95111e-4
chr12	132742558	132742653	5539926	0	-	0.526316	(0.523,0.58]	chr12	546702	1	INTRON	INTRON	ANKLE2	ENSG00000176915.15	ENST00000357997.10:ENST00000539605.5:ENST00000538591.5:ENST00000535036.5:ENST00000545623.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	253	2	7.12691	7.35192	7.57693	0.00127326	7.82132e-6	0.0217367	4.32234e-4
chr2	38717286	38717386	763861	0	+	0.46	(0.45,0.485]	chr2	88483	185	INTRON	INTRON	GALM	ENSG00000143891.17	ENST00000272252.10:ENST00000410063.5:ENST00000444351.5:ENST00000434934.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	571	2	5.99323	7.351125	8.70902	6.35772e-5	7.26216e-6	0.00444014	4.10219e-4
chr16	306123	306221	6529568	0	-	0.55102	(0.523,0.58]	chr16	648369	13	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	281	2	6.75961	7.350945	7.94228	2.44062e-4	1.00121e-4	0.00884339	0.00274217
chr6	1871028	1871128	3081583	0	-	0.47	(0.45,0.485]	chr6	299482	1281	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	896	2	5.64835	7.3508	9.05325	3.09697e-5	2.23314e-6	0.00310911	1.79965e-4
chr13	20498193	20498293	5662822	0	-	0.47	(0.45,0.485]	chr13	556208	83	INTRON	INTRON	CRYL1	ENSG00000165475.15	ENST00000643035.1:ENST00000644593.1:ENST00000298248.12:ENST00000644872.1:ENST00000382812.5:ENST00000643750.1:ENST00000644153.1:ENST00000643887.1:ENST00000644167.1:ENST00000646414.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	254	2	7.24942	7.350695	7.45197	0.0012056600000000001	1.6284e-5	0.0210584	7.25583e-4
chr11	72702504	72702604	5069933	0	-	0.55	(0.523,0.58]	chr11	493380	2	SS5_PROX	SS5_PROX:INTRON	ARAP1	ENSG00000186635.15	ENST00000359373.9:ENST00000393609.8:ENST00000465814.5:ENST00000334211.12:ENST00000393605.7:ENST00000426523.5:ENST00000429686.5:ENST00000427971.6:ENST00000452383.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	252	2	7.18788	7.350515	7.51315	0.00112897	9.60227e-6	0.0202727	4.98808e-4
chr1	27489485	27489585	431246	0	-	0.53	(0.523,0.58]	chr1	50974	1	SS5_PROX	SS5_PROX:INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	0	254	2	7.25169	7.35048	7.44927	6.69765e-4	2.20409e-5	0.0152294	9.00215e-4
chr2	232582675	232582772	1055268	0	+	0.505155	(0.485,0.523]	chr2	114733	17	UTR3	UTR3:EXON_MRNA	EIF4E2	ENSG00000135930.15	ENST00000687222.1:ENST00000690794.1:ENST00000409098.5:ENST00000409514.5:ENST00000459714.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	252	2	7.2237	7.35012	7.47654	0.00104165	1.15894e-5	0.0193905	5.71291e-4
chr13	112913316	112913416	5654749	0	+	0.4	(0.39,0.419]	chr13	555099	28	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000442625.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	262	2	7.15719	7.34967	7.54215	9.5067e-4	6.26794e-5	0.0184489	0.00193045
chr10	76062582	76062682	4526799	0	+	0.42	(0.419,0.45]	chr10	432311	34	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	261	2	7.07197	7.349645000000001	7.62732	0.00269142	1.89098e-5	0.0329086	8.09334e-4
chr19	950498	950598	7185351	0	+	0.66	(0.58,1]	chr19	730741	174	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	520	2	6.05211	7.349259999999999	8.64641	1.35228e-5	1.92467e-6	0.00213747	1.62188e-4
chr10	48041332	48041431	4680779	0	-	0.575758	(0.523,0.58]	chr10	446508	19	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	0	252	2	7.34605	7.34919	7.35233	8.24125e-4	1.60393e-5	0.0170688	7.1852e-4
chr6	142314937	142315037	3012007	0	+	0.43	(0.419,0.45]	chr6	294688	49	INTRON	INTRON	ADGRG6	ENSG00000112414.15	ENST00000230173.10:ENST00000367608.6:ENST00000415128.6:ENST00000296932.13:ENST00000367609.8:ENST00000541199.5:ENST00000545477.1:ENST00000435011.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	260	2	7.27785	7.348625	7.4194	0.00144685	5.20883e-5	0.023316	0.00169273
chr7	2042017	2042117	3530652	0	-	0.5	(0.485,0.523]	chr7	340995	270	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	271	2	6.69488	7.3484300000000005	8.00198	0.00290687	2.11842e-6	0.0342042	1.73297e-4
chr11	57500278	57500378	5038776	0	-	0.53	(0.523,0.58]	chr11	488208	1	SS5_PROX	SS5_PROX:INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	546	2	6.45437	7.347994999999999	8.24162	1.30529e-4	1.19668e-6	0.00633355	1.17257e-4
chr11	10291615	10291715	4996479	0	-	0.41	(0.39,0.419]	chr11	483395	973	INTRON	INTRON	SBF2	ENSG00000133812.18	ENST00000692716.1:ENST00000689940.1:ENST00000256190.13:ENST00000689128.1:ENST00000675281.2:ENST00000676387.2:ENST00000676324.2:ENST00000689258.1:ENST00000533770.6:ENST00000688417.1:ENST00000687210.1:ENST00000526353.2:ENST00000693022.1:ENST00000693201.1:ENST00000686079.1:ENST00000688206.1:ENST00000687256.1:ENST00000685217.1:ENST00000693212.1:ENST00000687300.1:ENST00000688739.1:ENST00000690806.1:ENST00000686677.1:ENST00000692068.1:ENST00000690959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	276	2	6.87442	7.34603	7.81764	5.6405e-4	1.40171e-4	0.0138715	0.00350296
chr15	90038624	90038724	6183931	0	+	0.41	(0.39,0.419]	chr15	608320	314	INTRON	INTRON	ZNF710	ENSG00000140548.10	ENST00000268154.9:ENST00000559419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	257	2	7.33499	7.345420000000001	7.35585	0.00134625	3.73979e-5	0.0224436	0.001322
chr5	64885646	64885746	2432943	0	+	0.42	(0.419,0.45]	chr5	242413	1	SS5_PROX	SS5_PROX:INTRON	CWC27	ENSG00000153015.17	ENST00000693303.1:ENST00000381070.8:ENST00000691921.1:ENST00000688318.1:ENST00000693660.1:ENST00000687314.1:ENST00000692763.1:ENST00000693121.1:ENST00000689534.1:ENST00000692005.1:ENST00000607786.2:ENST00000692572.1:ENST00000687101.1:ENST00000545000.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	258	2	7.30546	7.345225	7.38499	0.0017767	3.82846e-5	0.0262235	0.00134767
chr13	20497493	20497593	5662815	0	-	0.46	(0.45,0.485]	chr13	556208	76	INTRON	INTRON	CRYL1	ENSG00000165475.15	ENST00000643035.1:ENST00000644593.1:ENST00000298248.12:ENST00000644872.1:ENST00000382812.5:ENST00000643750.1:ENST00000644153.1:ENST00000643887.1:ENST00000644167.1:ENST00000646414.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	253	2	7.3052	7.344155000000001	7.38311	0.00108226	2.0142e-5	0.0198031	8.45059e-4
chr2	119766379	119766479	883655	0	+	0.54	(0.523,0.58]	chr2	100098	56	INTRON	INTRON	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000460162.1:ENST00000420482.5:ENST00000460289.5:ENST00000488279.6:ENST00000485247.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	671	2	6.15152	7.343855	8.53619	1.24289e-4	3.26533e-7	0.00618972	5.01278e-5
chr3	37862877	37862977	1443272	0	+	0.48	(0.45,0.485]	chr3	153956	2	INTRON	INTRON	CTDSPL	ENSG00000144677.15	ENST00000273179.10:ENST00000443503.6:ENST00000435525.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	672	2	5.88746	7.343775000000001	8.80009	2.59319e-4	2.13494e-7	0.00910866	3.81036e-5
chr17	7113916	7114016	6847773	0	-	0.63	(0.58,1]	chr17	693424	4	SS5_PROX	SS5_PROX:INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	673	2	6.11847	7.3432900000000005	8.56811	1.63825e-5	2.64982e-7	0.00233274	4.36902e-5
chr5	175881237	175881337	2594667	0	+	0.42	(0.419,0.45]	chr5	257471	13	UTR3	UTR3:EXON_MRNA	CPLX2	ENSG00000145920.15	ENST00000359546.8:ENST00000393745.8	protein_coding	protein_coding	protein_coding	protein_coding	2	1201	2	7.27672	7.343065	7.40941	0.00147325	5.37849e-8	0.0235837	1.56042e-5
chr7	30295082	30295182	3339005	0	+	0.54	(0.523,0.58]	chr7	323133	48	INTRON	INTRON	ZNRF2	ENSG00000180233.11	ENST00000323037.5	protein_coding	protein_coding	protein_coding	protein_coding	0	265	2	6.9483	7.342784999999999	7.73727	3.72681e-4	5.65196e-5	0.011082	0.00179471
chr9	4827729	4827828	4109467	0	+	0.515152	(0.485,0.523]	chr9	391326	3	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	251	2	7.16424	7.342295	7.52035	0.0011719	1.00801e-5	0.0206836	5.15349e-4
chr2	235999610	235999710	1067612	0	+	0.53	(0.523,0.58]	chr2	115748	306	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5:ENST00000418654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	254	2	7.18503	7.34163	7.49823	6.06692e-4	2.7167e-5	0.0144497	0.00104767
chr17	7107317	7107417	6847703	0	-	0.6	(0.58,1]	chr17	693409	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6	protein_coding	protein_coding	protein_coding	protein_coding	3	1658	2	7.26499	7.340455	7.41592	2.97529e-6	1.89981e-9	0.00112869	1.94552e-6
chr2	3295700	3295800	1081064	0	-	0.58	(0.523,0.58]	chr2	117633	130	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	250	2	7.28037	7.340255	7.40014	9.39615e-4	1.37794e-5	0.0183413	6.44262e-4
chr5	80966024	80966124	2468294	0	+	0.35	(0.33,0.36]	chr5	246550	46	INTRON	INTRON	RASGRF2	ENSG00000113319.13	ENST00000265080.9:ENST00000503795.1:ENST00000638442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	254	2	7.33427	7.34018	7.34609	0.00105263	3.01053e-5	0.0194688	0.00113086
chr10	132565748	132565848	4617118	0	+	0.47	(0.45,0.485]	chr10	441139	272	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	252	2	7.24942	7.3393999999999995	7.42938	0.0012056600000000001	1.74625e-5	0.0210584	7.63142e-4
chr11	70811568	70811668	5062399	0	-	0.46	(0.45,0.485]	chr11	492713	40	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	254	2	7.24765	7.339265	7.43088	8.47151e-4	3.05036e-5	0.0173017	0.00114349
chr8	38769893	38769993	3802254	0	+	0.52	(0.485,0.523]	chr8	365828	121	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	1437	2	7.19117	7.338995	7.48682	1.29907e-5	3.81811e-8	0.00209785	1.24997e-5
chr12	124961220	124961319	5537767	0	-	0.59596	(0.58,1]	chr12	546181	4	INTRON	INTRON	DHX37	ENSG00000150990.9	ENST00000308736.7:ENST00000544745.2:ENST00000679875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	246	2	6.94286	7.338875	7.73489	7.47593e-4	1.45603e-6	0.0161372	1.34292e-4
chr18	80186137	80186237	7183141	0	-	0.59	(0.58,1]	chr18	730364	26	INTRON	INTRON	PARD6G	ENSG00000178184.16	ENST00000353265.8:ENST00000470488.2:ENST00000463384.1	protein_coding	protein_coding	protein_coding	protein_coding	0	241	2	7.27989	7.33874	7.39759	3.49762e-4	4.81832e-6	0.0106878	3.07804e-4
chr6	11043328	11043427	3093176	0	-	0.484848	(0.45,0.485]	chr6	300390	322	INTRON	INTRON	ELOVL2	ENSG00000197977.4	ENST00000354666.4	protein_coding	protein_coding	protein_coding	protein_coding	0	252	2	7.29422	7.338665000000001	7.38311	0.00110556	2.0142e-5	0.0200331	8.45059e-4
chr17	37119556	37119655	6890359	0	-	0.434343	(0.419,0.45]	chr17	699623	59	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000619546.4:ENST00000617649.4:ENST00000614482.4:ENST00000613776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	258	2	7.27785	7.338595	7.39934	0.0015003	5.20883e-5	0.0238965	0.00169273
chr5	1464430	1464526	2609367	0	-	0.510417	(0.485,0.523]	chr5	259790	2	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000503252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	302	2	6.51742	7.33831	8.1592	2.15808e-4	1.53304e-4	0.00689544	0.00477041
chr14	91221344	91221441	5899570	0	+	0.453608	(0.45,0.485]	chr14	576435	7	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	253	2	7.28587	7.33803	7.39019	9.17281e-4	2.71448e-5	0.0180726	0.00104767
chr1	248854551	248854633	709839	0	-	0.402439	(0.39,0.419]	chr1	83013	1	INTRON	INTRON	ZNF692	ENSG00000171163.16	ENST00000463519.5:ENST00000306601.9:ENST00000366471.7:ENST00000533927.5:ENST00000476503.5:ENST00000477070.6:ENST00000412341.6:ENST00000482023.5:ENST00000451251.5:ENST00000470787.6:ENST00000474351.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	259	2	7.00175	7.337945	7.67414	0.00257379	1.36968e-5	0.0321387	6.42908e-4
chr5	1498880	1498979	2609728	0	-	0.454545	(0.45,0.485]	chr5	259859	36	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000514484.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	670	2	5.37479	7.33794	9.30109	5.05076e-5	1.83817e-5	0.0024642	0.00165934
chr6	116178076	116178176	2989389	0	+	0.53	(0.523,0.58]	chr6	292828	327	INTRON	INTRON	NT5DC1	ENSG00000178425.14	ENST00000319550.9:ENST00000460749.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	253	2	6.99665	7.337	7.67735	0.00164293	5.65256e-6	0.0250898	3.44583e-4
chrX	2224927	2225027	7966087	0	-	0.45	(0.419,0.45]	chrX	834328	33	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11	protein_coding	protein_coding	protein_coding	protein_coding	0	259	2	7.21471	7.336705	7.4587	0.0013474	6.2377e-5	0.0224436	0.00192539
chr2	239280977	239281077	1391518	0	-	0.43	(0.419,0.45]	chr2	148740	294	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	272	2	6.74638	7.335335000000001	7.92429	0.00473615	7.84779e-6	0.0449264	4.32984e-4
chr19	47228846	47228946	7392370	0	-	0.67	(0.58,1]	chr19	768105	4	SS3_PROX	SS3_PROX:INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	2	1241	2	7.11316	7.33502	7.55688	4.35099e-6	6.9215e-9	0.00128014	4.21173e-6
chr5	856376	856475	2607918	0	-	0.444444	(0.419,0.45]	chr5	259417	54	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	0	293	2	6.48603	7.334865000000001	8.1837	0.00734278	3.59818e-6	0.0570055	2.5106e-4
chr11	70741585	70741684	5061697	0	-	0.59596	(0.58,1]	chr11	492701	237	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	248	2	7.06859	7.334275	7.59996	1.66865e-4	1.50295e-5	0.00722822	6.85908e-4
chr9	100192132	100192232	4198882	0	+	0.43	(0.419,0.45]	chr9	398926	598	INTRON	INTRON	INVS	ENSG00000119509.13	ENST00000262457.7:ENST00000496467.5:ENST00000262456.6:ENST00000466647.5:ENST00000460636.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	256	2	7.29464	7.334055	7.37347	0.00181153	3.95779e-5	0.0264638	0.00138507
chr14	89180906	89181006	6025900	0	-	0.5	(0.485,0.523]	chr14	591408	1	SS3_PROX	SS3_PROX:INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000556541.1:ENST00000555010.1:ENST00000557496.1:ENST00000557718.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	731	2	5.68638	7.3340499999999995	8.98172	2.65398e-5	3.43953e-6	0.00292723	2.43121e-4
chr21	43959233	43959333	7625376	0	+	0.55	(0.523,0.58]	chr21	796925	2	SS3_PROX	SS3_PROX:INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000448845.1:ENST00000422850.5:ENST00000546158.1	protein_coding	protein_coding	protein_coding	protein_coding	0	250	2	7.29026	7.33403	7.3778	7.7332e-4	1.95191e-5	0.0164417	8.25524e-4
chr5	1498781	1498880	2609727	0	-	0.444444	(0.419,0.45]	chr5	259859	35	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000514484.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	289	2	6.69136	7.333025	7.97469	5.2054e-4	2.67131e-4	0.0132625	0.00557451
chr1	5868989	5869088	386503	0	-	0.555556	(0.523,0.58]	chr1	44370	7	INTRON	INTRON	NPHP4	ENSG00000131697.18	ENST00000378156.9:ENST00000478423.6:ENST00000489180.6:ENST00000378169.7:ENST00000468253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	251	2	7.03698	7.3325	7.62802	0.00151874	6.63212e-6	0.0240441	3.85278e-4
chr6	10588913	10589013	2850436	0	+	0.49	(0.485,0.523]	chr6	278695	16	INTRON	INTRON	GCNT2	ENSG00000111846.20	ENST00000410107.5:ENST00000489225.5:ENST00000397423.7:ENST00000495262.7:ENST00000475577.5:ENST00000489819.5:ENST00000474518.1:ENST00000379597.7:ENST00000485764.1:ENST00000461400.1:ENST00000316170.9:ENST00000459872.1:ENST00000265012.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	249	2	7.17633	7.331975	7.48762	0.00114421	1.11881e-5	0.0204418	5.5674e-4
chr17	80021803	80021903	6982134	0	-	0.49	(0.485,0.523]	chr17	713081	78	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7	protein_coding	protein_coding	protein_coding	protein_coding	0	250	2	7.08949	7.3314	7.57331	0.00135789	8.51093e-6	0.0224546	4.57175e-4
chr1	5869088	5869187	386504	0	-	0.535354	(0.523,0.58]	chr1	44370	8	INTRON	INTRON	NPHP4	ENSG00000131697.18	ENST00000378156.9:ENST00000478423.6:ENST00000489180.6:ENST00000378169.7:ENST00000468253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	255	2	6.89792	7.33002	7.76212	0.00198913	4.29035e-6	0.0279961	2.82813e-4
chr11	497870	497970	4968425	0	-	0.54	(0.523,0.58]	chr11	480492	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RNH1	ENSG00000023191.17	ENST00000534797.5:ENST00000397614.5:ENST00000397604.7:ENST00000354420.7:ENST00000397615.6:ENST00000525522.5:ENST00000525701.5:ENST00000529768.5:ENST00000533410.5:ENST00000438658.6:ENST00000356187.9:ENST00000524464.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	255	2	6.89792	7.33002	7.76212	0.00198913	4.29035e-6	0.0279961	2.82813e-4
chr2	3296499	3296598	1081072	0	-	0.535354	(0.523,0.58]	chr2	117633	138	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	248	2	7.23487	7.329165	7.42346	0.00102861	1.27928e-5	0.0192522	6.12982e-4
chr17	28111905	28112005	6704797	0	+	0.45	(0.419,0.45]	chr17	673022	631	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	260	2	6.95316	7.328025	7.70289	0.00331448	1.51402e-5	0.0368376	6.8895e-4
chr2	108587222	108587321	871480	0	+	0.444444	(0.419,0.45]	chr2	98292	65	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1:ENST00000695519.1	protein_coding	protein_coding	protein_coding	protein_coding	0	265	2	7.00677	7.32794	7.64911	9.51747e-4	1.1216e-4	0.0184489	0.00298349
chr11	70776758	70776858	5062049	0	-	0.5	(0.485,0.523]	chr11	492701	589	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	701	2	6.4121	7.32771	8.24332	7.04454e-5	9.54563e-7	0.00470747	1.01723e-4
chr9	134339334	134339434	4260816	0	+	0.62	(0.58,1]	chr9	406311	123	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	603	2	6.20777	7.327685	8.4476	4.07942e-5	1.07342e-7	0.00354247	2.44609e-5
chr18	77118825	77118925	7181509	0	-	0.53	(0.523,0.58]	chr18	730186	132	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1:ENST00000583798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	291	2	6.58447	7.327665	8.07086	1.86729e-4	1.68436e-4	0.00769604	0.00400681
chr19	3528412	3528511	7191582	0	+	0.646465	(0.58,1]	chr19	732249	2	INTRON	INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	252	2	6.95657	7.327475	7.69838	1.3248e-4	2.19702e-5	0.00637826	8.99734e-4
chr6	159981188	159981288	3065386	0	+	0.6	(0.58,1]	chr6	297908	114	INTRON	INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	240	2	7.09515	7.327445	7.55974	5.31842e-4	2.72008e-6	0.0134466	2.04763e-4
chr4	186675698	186675798	2374701	0	-	0.51	(0.485,0.523]	chr4	237245	117	INTRON	INTRON	FAT1	ENSG00000083857.15	ENST00000441802.7	protein_coding	protein_coding	protein_coding	protein_coding	0	248	2	7.26956	7.327135	7.38471	9.50795e-4	1.55038e-5	0.0184489	7.00888e-4
chr13	39044181	39044275	5576132	0	+	0.457447	(0.45,0.485]	chr13	549882	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NHLRC3	ENSG00000188811.14	ENST00000470258.5:ENST00000379599.6:ENST00000379600.8:ENST00000485407.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	559	2	5.99323	7.325875	8.65852	7.06111e-5	7.26216e-6	0.00470781	4.10219e-4
chr9	137780017	137780117	4266109	0	+	0.51	(0.485,0.523]	chr9	407437	3	SS5_PROX	SS5_PROX:INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	251	2	6.99708	7.325635	7.65419	0.00162697	6.56483e-6	0.0249683	3.8256e-4
chr16	89305744	89305844	6659869	0	-	0.68	(0.58,1]	chr16	666664	4	SS3_PROX	SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1:ENST00000647539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	239	2	7.30282	7.325265	7.34771	3.31884e-4	5.73693e-6	0.0103819	3.48335e-4
chr16	10414612	10414712	6384316	0	+	0.5	(0.485,0.523]	chr16	631467	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ATF7IP2	ENSG00000166669.14	ENST00000564797.5:ENST00000396559.5:ENST00000396560.6:ENST00000562527.5:ENST00000561932.5:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000569900.5:ENST00000569939.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	546	2	6.55978	7.32518	8.09058	1.77028e-4	8.97876e-7	0.00747595	9.79186e-5
chr8	23091782	23091881	3772932	0	+	0.444444	(0.419,0.45]	chr8	363266	11	INTRON	INTRON	ENSG00000284948	ENSG00000284948.1	ENST00000397703.6	lncRNA	lncRNA	lncRNA	lncRNA	1	580	2	6.01294	7.324955	8.63697	1.4833e-4	1.17352e-5	0.00678817	5.76786e-4
chr21	45476745	45476827	7631037	0	+	0.52439	(0.523,0.58]	chr21	797685	3	SS5_PROX	SS5_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	248	2	7.30289	7.32447	7.34605	8.24125e-4	1.87561e-5	0.0170688	8.04567e-4
chr9	135838061	135838161	4431127	0	-	0.49	(0.485,0.523]	chr9	423507	101	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	256	2	6.85388	7.32425	7.79462	0.00214661	4.16953e-6	0.0291055	2.78321e-4
chr19	15643008	15643107	7215383	0	+	0.383838	(0.36,0.39]	chr19	737133	10	INTRON	INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	266	2	6.93931	7.3239	7.70849	6.70005e-4	1.15604e-4	0.0152294	0.00305897
chr13	20074134	20074233	5543981	0	+	0.383838	(0.36,0.39]	chr13	547321	59	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000382883.7:ENST00000382870.7:ENST00000494061.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	581	2	5.90169	7.32364	8.74559	8.82217e-5	1.41391e-5	0.00521355	6.55245e-4
chr17	80893448	80893527	6812412	0	+	0.582278	(0.58,1]	chr17	687926	2	SS3_PROX	SS3_PROX:INTRON	RPTOR	ENSG00000141564.15	ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	498	2	6.48564	7.323135	8.16063	4.40668e-5	3.93113e-7	0.00367146	5.6671e-5
chr2	43915214	43915312	1135908	0	-	0.418367	(0.39,0.419]	chr2	124282	28	EXON_MRNA	EXON_MRNA:INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000682845.1:ENST00000682295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	254	2	7.24883	7.322975	7.39712	0.00124687	4.80774e-5	0.0214752	0.00160016
chr9	133802193	133802293	4428413	0	-	0.42	(0.419,0.45]	chr9	423268	40	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	0	257	2	7.17545	7.321904999999999	7.46836	0.00132398	6.97411e-5	0.0222129	0.00209831
chr18	74916519	74916619	7092447	0	+	0.5	(0.485,0.523]	chr18	722466	107	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	252	2	7.12577	7.321785	7.5178	5.7709e-4	3.48268e-5	0.0140531	0.00126017
chr8	122887126	122887226	3910717	0	+	0.48	(0.45,0.485]	chr8	373489	232	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6:ENST00000534247.1	protein_coding	protein_coding	protein_coding	protein_coding	1	688	2	6.23434	7.321149999999999	8.40796	1.26703e-4	7.74154e-7	0.00623708	8.87873e-5
chr6	158245992	158246091	3060975	0	+	0.434343	(0.419,0.45]	chr6	297572	133	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	702	2	5.95204	7.321105	8.69017	3.64518e-4	7.654e-7	0.0109532	8.8287e-5
chr13	113215759	113215858	5657365	0	+	0.585859	(0.58,1]	chr13	555523	53	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000488558.2:ENST00000375440.9:ENST00000474116.5:ENST00000494985.5:ENST00000463426.5:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	238	2	7.18431	7.3209599999999995	7.45761	4.34792e-4	3.90231e-6	0.0119405	2.65981e-4
chr1	50472366	50472466	474840	0	-	0.44	(0.419,0.45]	chr1	56726	198	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	254	2	7.30236	7.3199000000000005	7.33744	0.00167748	4.85572e-5	0.0253722	0.00161039
chr19	1642268	1642367	7306932	0	-	0.59596	(0.58,1]	chr19	753295	95	INTRON	INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000395423.7:ENST00000587235.6:ENST00000586318.1	protein_coding	protein_coding	protein_coding	protein_coding	1	495	2	6.33939	7.31882	8.29825	3.16046e-5	6.74333e-7	0.00314447	8.0894e-5
chr11	70803125	70803225	5062314	0	-	0.47	(0.45,0.485]	chr11	492707	42	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5:ENST00000460048.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	551	2	6.06248	7.318614999999999	8.57475	8.40037e-5	5.81826e-6	0.00507439	3.51962e-4
chr13	113028939	113029037	5655918	0	+	0.561224	(0.523,0.58]	chr13	555157	20	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486806.1:ENST00000473345.5	protein_coding	protein_coding	protein_coding	protein_coding	0	252	2	7.10074	7.318495	7.53625	5.6173e-4	3.53278e-5	0.0138488	0.00126913
chr7	74499901	74500000	3391826	0	+	0.383838	(0.36,0.39]	chr7	327343	454	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	2	766	2	6.07834	7.318160000000001	8.55798	1.28084e-4	1.91343e-6	0.00627073	1.61727e-4
chr4	1176771	1176870	2179444	0	-	0.343434	(0.33,0.36]	chr4	220858	37	INTRON	INTRON	SPON2	ENSG00000159674.12	ENST00000617421.4:ENST00000515004.5:ENST00000502483.5:ENST00000509233.5:ENST00000511679.5:ENST00000511672.5:ENST00000506266.1:ENST00000504871.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	312	2	6.23387	7.3172049999999995	8.40054	0.00810355	1.11077e-6	0.0602166	1.11442e-4
chr1	16131144	16131220	403893	0	-	0.486842	(0.485,0.523]	chr1	46435	4	INTRON	INTRON	EPHA2	ENSG00000142627.13	ENST00000358432.8	protein_coding	protein_coding	protein_coding	protein_coding	0	247	2	7.28664	7.31656	7.34648	8.15285e-4	2.11074e-5	0.016997	8.73346e-4
chr14	30596124	30596224	5769647	0	+	0.48	(0.45,0.485]	chr14	565840	21	INTRON	INTRON	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000438909.6:ENST00000544007.5:ENST00000648008.1:ENST00000553504.5:ENST00000549553.1:ENST00000552515.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	248	2	7.21489	7.31642	7.41795	0.00128871	1.809e-5	0.0219081	7.83029e-4
chr2	175073330	175073428	1321453	0	-	0.377551	(0.36,0.39]	chr2	141112	12	UTR3	UTR3:EXON_MRNA	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5	protein_coding	protein_coding	protein_coding	protein_coding	0	257	2	7.08856	7.316045	7.54353	9.16418e-4	7.55582e-5	0.0180726	0.00222665
chr12	3109292	3109392	5158863	0	+	0.41	(0.39,0.419]	chr12	501337	252	INTRON	INTRON	TSPAN9	ENSG00000011105.14	ENST00000537971.5:ENST00000444315.6:ENST00000011898.10:ENST00000649909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	285	2	6.66226	7.3156300000000005	7.969	4.21961e-4	2.52597e-4	0.011772	0.00536182
chr16	89303222	89303321	6659841	0	-	0.525253	(0.523,0.58]	chr16	666658	12	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	541	2	6.56658	7.315475	8.06437	1.89277e-4	8.19601e-7	0.00776158	9.21344e-5
chr7	1938890	1938989	3529613	0	-	0.686869	(0.58,1]	chr7	340962	16	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000450235.5:ENST00000437877.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	239	2	7.02791	7.315405	7.6029	6.18479e-4	2.33339e-6	0.0145945	1.85287e-4
chr9	87537471	87537571	4175824	0	+	0.4	(0.39,0.419]	chr9	397141	121	INTRON	INTRON	DAPK1	ENSG00000196730.13	ENST00000358077.9:ENST00000469640.6:ENST00000472284.5:ENST00000469067.5:ENST00000408954.8:ENST00000622514.4:ENST00000496522.5:ENST00000472344.1:ENST00000491893.5:ENST00000489291.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	258	2	6.89055	7.314665	7.73878	0.00314209	1.12811e-5	0.0358106	5.59542e-4
chr13	98365937	98366035	5635909	0	+	0.428571	(0.419,0.45]	chr13	553532	1	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5:ENST00000595817.5:ENST00000595380.5:ENST00000596467.5:ENST00000600032.5:ENST00000601853.5:ENST00000596613.5:ENST00000599040.5:ENST00000602263.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	253	2	7.30236	7.31461	7.32686	0.00170971	4.85572e-5	0.025659	0.00161039
chr17	77484227	77484327	6805224	0	+	0.52	(0.485,0.523]	chr17	686821	2	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	256	2	6.99213	7.314225	7.63632	4.53335e-4	5.25088e-5	0.0122578	0.00170211
chr13	26362261	26362360	5552272	0	+	0.454545	(0.45,0.485]	chr13	547934	80	INTRON	INTRON	CDK8	ENSG00000132964.12	ENST00000536792.5:ENST00000381527.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	248	2	7.14323	7.314215	7.4852	0.00147887	1.469e-5	0.023604	6.74072e-4
chr8	38769993	38770093	3802255	0	+	0.55	(0.523,0.58]	chr8	365828	122	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	2580	2	7.19184	7.31368	7.43552	4.80973e-6	7.9446e-9	0.00133542	4.51057e-6
chr12	132531175	132531275	5352927	0	+	0.67	(0.58,1]	chr12	523670	28	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	237	2	7.2914	7.31318	7.33496	3.40674e-4	5.99783e-6	0.010549	3.5765e-4
chr4	17628151	17628250	2017159	0	+	0.353535	(0.33,0.36]	chr4	206143	26	UTR3	UTR3:EXON_MRNA	MED28	ENSG00000118579.13	ENST00000237380.12:ENST00000503945.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	685	2	6.18586	7.313065	8.44027	1.47574e-4	9.78926e-7	0.0067648	1.03661e-4
chr2	47336219	47336319	1141968	0	-	0.47	(0.45,0.485]	chr2	124898	28	INTRON	INTRON	EPCAM-DT	ENSG00000234690.7	ENST00000448713.5:ENST00000441997.5:ENST00000419035.1:ENST00000450550.5:ENST00000413185.2	lncRNA	lncRNA	lncRNA	lncRNA	1	629	2	5.47054	7.31222	9.1539	3.76074e-5	2.50656e-5	0.00286113	0.00132758
chr8	143607714	143607796	4097300	0	-	0.548781	(0.523,0.58]	chr8	389391	2	SS5_PROX	SS5_PROX:INTRON	PYCR3	ENSG00000104524.14	ENST00000495276.6:ENST00000220966.10:ENST00000447926.6:ENST00000433751.5:ENST00000377579.7:ENST00000462036.5:ENST00000482616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	247	2	7.03698	7.312139999999999	7.5873	0.00151874	7.56432e-6	0.0240441	4.21779e-4
chr14	37787837	37787937	5788867	0	+	0.41	(0.39,0.419]	chr14	567164	2	SS5_PROX	SS5_PROX:INTRON	TTC6	ENSG00000139865.17	ENST00000553443.6:ENST00000533625.5:ENST00000476979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	254	2	6.98831	7.312085	7.63586	0.0026369	1.53591e-5	0.0325876	6.97726e-4
chr2	3297197	3297297	1081079	0	-	0.48	(0.45,0.485]	chr2	117633	145	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	248	2	7.10603	7.311859999999999	7.51769	0.00158793	1.32798e-5	0.0245893	6.28604e-4
chr18	79357359	79357458	7099859	0	+	0.626263	(0.58,1]	chr18	722963	88	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000426216.6:ENST00000307671.12:ENST00000490210.6:ENST00000590477.5:ENST00000589951.5:ENST00000588921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	242	2	7.09906	7.311484999999999	7.52391	1.99239e-4	1.35452e-5	0.00796847	6.38288e-4
chr2	3295600	3295700	1081063	0	-	0.58	(0.523,0.58]	chr2	117633	129	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	245	2	7.2578	7.311114999999999	7.36443	9.82792e-4	1.54352e-5	0.0187972	6.98728e-4
chr4	153487585	153487685	2151094	0	+	0.54	(0.523,0.58]	chr4	217962	133	INTRON	INTRON	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000445960.5:ENST00000409959.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	245	2	7.28037	7.31025	7.34013	9.39615e-4	1.66718e-5	0.0183413	7.38685e-4
chr19	36489012	36489112	7369764	0	-	0.5	(0.485,0.523]	chr19	764032	2	SS5_PROX	SS5_PROX:INTRON	ZNF566	ENSG00000186017.16	ENST00000493391.6:ENST00000392170.7:ENST00000452939.7:ENST00000427002.2:ENST00000424129.7:ENST00000434377.6:ENST00000472909.6:ENST00000460937.5:ENST00000480361.1:ENST00000494354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	255	2	6.80799	7.31017	7.81235	0.0023441	3.93619e-6	0.0305023	2.67098e-4
chr22	27946960	27947060	7703825	0	+	0.46	(0.45,0.485]	chr22	806176	64	INTRON	INTRON	TTC28-AS1	ENSG00000235954.8	ENST00000430853.5:ENST00000434221.6:ENST00000417497.6:ENST00000424161.6:ENST00000419253.1:ENST00000454741.5:ENST00000659843.1:ENST00000665376.1:ENST00000453632.6:ENST00000662682.1:ENST00000655332.1:ENST00000454996.7:ENST00000665505.1:ENST00000435348.6:ENST00000664946.1:ENST00000425112.2:ENST00000654553.1:ENST00000669227.1:ENST00000452612.5:ENST00000688200.1:ENST00000662424.1:ENST00000654619.1	lncRNA	lncRNA	lncRNA	lncRNA	0	276	2	6.70552	7.309	7.91248	3.25318e-4	1.52809e-4	0.010266	0.00372909
chr12	62771045	62771145	5445753	0	-	0.44	(0.419,0.45]	chr12	535900	331	INTRON	INTRON	PPM1H	ENSG00000111110.12	ENST00000228705.7:ENST00000551519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	254	2	7.18865	7.30899	7.42933	0.00142109	6.71746e-5	0.023055	0.00203494
chr5	180577170	180577269	2606446	0	+	0.353535	(0.33,0.36]	chr5	259163	31	UTR3	UTR3:EXON_MRNA	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4	protein_coding	protein_coding	protein_coding	protein_coding	0	248	2	7.22426	7.308775000000001	7.39329	0.00133036	2.52224e-5	0.0222846	9.94598e-4
chr16	85230965	85231065	6515378	0	+	0.49	(0.485,0.523]	chr16	646377	32	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	259	2	6.91216	7.3084299999999995	7.7047	3.94091e-4	6.69654e-5	0.0113656	0.00203052
chr16	81626791	81626891	6509565	0	+	0.46	(0.45,0.485]	chr16	645926	47	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	2	914	2	5.67361	7.308055	8.9425	1.58544e-4	1.33187e-7	0.00704932	2.79952e-5
chrX	2383060	2383160	7967674	0	-	0.45	(0.419,0.45]	chrX	834355	447	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	255	2	7.13509	7.306525000000001	7.47796	0.0013011	7.8188e-5	0.0220198	0.00227541
chr4	2813738	2813833	2000243	0	+	0.484211	(0.45,0.485]	chr4	203927	9	INTRON	INTRON	SH3BP2	ENSG00000087266.17	ENST00000503219.5:ENST00000512131.5:ENST00000503393.8:ENST00000510074.5:ENST00000511237.5:ENST00000504294.5:ENST00000508385.5:ENST00000513020.5:ENST00000511663.5:ENST00000512014.5:ENST00000513095.5:ENST00000502260.5:ENST00000435136.8:ENST00000511185.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	284	2	6.42921	7.3063	8.18339	0.00554658	1.60496e-6	0.0492398	1.43681e-4
chr10	7722757	7722853	4442144	0	+	0.541667	(0.523,0.58]	chr10	425524	6	INTRON	INTRON	ITIH2	ENSG00000151655.19	ENST00000358415.9:ENST00000379587.4	protein_coding	protein_coding	protein_coding	protein_coding	0	253	2	6.82302	7.30616	7.7893	0.00229691	3.92607e-6	0.0302623	2.66734e-4
chr4	3362199	3362299	2005058	0	+	0.63	(0.58,1]	chr4	204663	188	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	236	2	7.10823	7.306065	7.5039	5.16402e-4	3.31459e-6	0.0132022	2.35778e-4
chr16	85510485	85510585	6518176	0	+	0.63	(0.58,1]	chr16	646391	1512	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	264	2	6.70249	7.304925	7.90736	8.08063e-5	5.11463e-5	0.00498873	0.00167326
chr2	55008086	55008186	1148105	0	-	0.41	(0.39,0.419]	chr2	125459	200	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	0	250	2	7.27397	7.3043700000000005	7.33477	0.00139992	4.46867e-5	0.0228907	0.00151523
chr12	15780478	15780578	5380405	0	-	0.42	(0.419,0.45]	chr12	527515	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	EPS8	ENSG00000151491.14	ENST00000281172.10:ENST00000543523.5:ENST00000543468.5:ENST00000644374.1:ENST00000646918.1:ENST00000645775.1:ENST00000642939.1:ENST00000646828.1:ENST00000647224.1:ENST00000642278.1:ENST00000646123.1:ENST00000647087.1:ENST00000536956.5:ENST00000535752.5:ENST00000536793.5:ENST00000543363.5:ENST00000544064.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	689	2	5.76403	7.304085	8.84414	5.2114e-4	4.75495e-7	0.0132625	6.41524e-5
chr5	10742908	10743007	2612466	0	-	0.414141	(0.39,0.419]	chr5	260258	83	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5:ENST00000510546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	249	2	7.21294	7.303229999999999	7.39352	0.00175257	3.14999e-5	0.0259791	0.00116717
chr7	66087162	66087247	3379049	0	+	0.6	(0.58,1]	chr7	326137	5	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASL	ENSG00000126522.17	ENST00000672586.1:ENST00000304874.14:ENST00000673518.1:ENST00000672498.1:ENST00000673350.1:ENST00000380839.9:ENST00000395332.8:ENST00000672676.1:ENST00000362000.10:ENST00000395331.4:ENST00000671817.1:ENST00000673594.1:ENST00000673149.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	248	2	6.9229	7.301935	7.68097	1.38011e-4	2.46059e-5	0.00651662	9.771e-4
chr2	134450838	134450937	898756	0	+	0.484848	(0.45,0.485]	chr2	101298	21	UTR3	UTR3:EXON_MRNA	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	2	756	2	6.29176	7.301665	8.31157	1.44501e-4	5.91172e-7	0.00670587	7.40609e-5
chr18	79145254	79145354	7097702	0	+	0.64	(0.58,1]	chr18	722822	10	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000586672.5:ENST00000590271.5:ENST00000490210.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	493	2	6.533	7.301475	8.06995	5.47978e-5	3.29841e-7	0.00409825	5.03596e-5
chr12	122095062	122095162	5343539	0	+	0.54	(0.523,0.58]	chr12	521864	154	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	260	2	6.86558	7.301425	7.73727	3.72681e-4	7.2723e-5	0.011082	0.00216169
chr15	28216797	28216897	6207139	0	-	0.46	(0.45,0.485]	chr15	611111	6	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	0	249	2	6.96076	7.30077	7.64078	0.00209187	9.04119e-6	0.0287557	4.78548e-4
chr5	14349297	14349397	2385425	0	+	0.42	(0.419,0.45]	chr5	238535	122	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000512070.6:ENST00000509967.6:ENST00000513206.5:ENST00000515144.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	252	2	7.02037	7.29918	7.57799	0.00294696	2.18502e-5	0.0344907	8.98326e-4
chr19	39158344	39158443	7259592	0	+	0.626263	(0.58,1]	chr19	744161	11	INTRON	INTRON	PAK4	ENSG00000130669.17	ENST00000602004.1:ENST00000599470.5:ENST00000360442.8:ENST00000321944.8:ENST00000593480.5:ENST00000358301.7:ENST00000593690.5:ENST00000599386.5:ENST00000599657.5	protein_coding	protein_coding	protein_coding	protein_coding	0	238	2	7.1436	7.298755	7.45391	2.34376e-4	1.16294e-5	0.00863036	5.71933e-4
chr7	101825773	101825873	3434066	0	+	0.55	(0.523,0.58]	chr7	332510	64	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	243	2	7.26913	7.298475	7.32782	9.60886e-4	1.73343e-5	0.0185615	7.59912e-4
chr1	45096531	45096631	463482	0	-	0.48	(0.45,0.485]	chr1	55667	79	INTRON	INTRON	ZSWIM5	ENSG00000162415.7	ENST00000359600.6:ENST00000464588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	278	2	6.64799	7.297975	7.94796	3.0286e-4	1.80357e-4	0.00988096	0.00419938
chr20	32478210	32478309	7543650	0	-	0.464646	(0.45,0.485]	chr20	787372	31	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	259	2	6.89879	7.2973300000000005	7.69587	5.02031e-4	8.68871e-5	0.0129939	0.00246367
chr22	20123385	20123479	7686876	0	+	0.648936	(0.58,1]	chr22	804213	3	INTRON	INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000331821.7:ENST00000411892.5:ENST00000423859.5:ENST00000418705.2:ENST00000448394.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	245	2	6.95657	7.29655	7.63653	1.53179e-4	2.19702e-5	0.00689544	8.99734e-4
chr7	127975273	127975373	3471480	0	+	0.53	(0.523,0.58]	chr7	335423	257	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	244	2	7.03698	7.29648	7.55598	0.00151874	8.36731e-6	0.0240441	4.52433e-4
chr17	30394810	30394910	6710955	0	+	0.45	(0.419,0.45]	chr17	673915	92	INTRON	INTRON	CPD	ENSG00000108582.12	ENST00000225719.9:ENST00000543464.6	protein_coding	protein_coding	protein_coding	protein_coding	0	249	2	7.22796	7.29491	7.36186	0.00204103	4.09247e-5	0.0283511	0.00142036
chr4	3179431	3179528	2003662	0	+	0.546392	(0.523,0.58]	chr4	204462	6	INTRON	INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000680291.1:ENST00000510626.5:ENST00000509043.1:ENST00000513326.5:ENST00000513639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	242	2	7.15161	7.2932950000000005	7.43498	0.0012128	1.23313e-5	0.0210863	5.95111e-4
chr20	4966794	4966894	7518228	0	-	0.43	(0.419,0.45]	chr20	784900	337	INTRON	INTRON	SLC23A2	ENSG00000089057.15	ENST00000379333.5:ENST00000338244.6:ENST00000468355.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	260	2	6.94586	7.293225	7.64059	9.66752e-4	1.32913e-4	0.0186655	0.00337193
chr3	72400519	72400619	1831595	0	-	0.56	(0.523,0.58]	chr3	188303	200	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	0	261	2	6.81357	7.291555000000001	7.76954	3.48766e-4	8.51182e-5	0.0106878	0.00242869
chrX	48819179	48819268	7879404	0	+	0.47191	(0.45,0.485]	chrX	826248	4	INTRON	INTRON	HDAC6	ENSG00000094631.21	ENST00000376619.6:ENST00000477528.5:ENST00000334136.11:ENST00000643659.1:ENST00000643374.1:ENST00000644068.1:ENST00000643934.1:ENST00000647398.1:ENST00000486227.5:ENST00000645643.1:ENST00000486665.5:ENST00000470942.1:ENST00000480525.5:ENST00000498808.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	244	2	7.13094	7.291455	7.45197	0.00151409	1.6284e-5	0.0240218	7.25583e-4
chr2	239371002	239371102	1392422	0	-	0.67	(0.58,1]	chr2	148759	177	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	233	2	7.17191	7.290855	7.4098	4.47193e-4	4.61644e-6	0.0121697	2.97736e-4
chr18	47885121	47885221	7157229	0	-	0.5	(0.485,0.523]	chr18	727750	142	INTRON	INTRON	SMAD2	ENSG00000175387.16	ENST00000262160.11:ENST00000402690.6:ENST00000356825.8:ENST00000586040.5:ENST00000591214.5:ENST00000587353.5:ENST00000587269.5:ENST00000586514.5:ENST00000587421.5:ENST00000586487.2:ENST00000589877.5:ENST00000585978.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	245	2	7.13988	7.289795	7.43971	6.75881e-4	3.33392e-5	0.0153083	0.0012196
chr17	28321793	28321893	6705680	0	+	0.49	(0.485,0.523]	chr17	673093	17	INTRON	INTRON	TMEM97	ENSG00000109084.14	ENST00000226230.8:ENST00000583381.5:ENST00000582113.1:ENST00000582384.1:ENST00000336687.6	protein_coding	protein_coding	protein_coding	protein_coding	0	252	2	6.96067	7.28969	7.61871	4.69943e-4	5.77936e-5	0.012528	0.00182276
chr12	132531474	132531574	5352930	0	+	0.61	(0.58,1]	chr12	523670	31	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	486	2	6.24142	7.289535	8.33765	2.87252e-5	9.65991e-7	0.00301898	1.02615e-4
chr5	93588744	93588844	2482663	0	+	0.67	(0.58,1]	chr5	247302	3	SS5_PROX	SS5_PROX:INTRON	NR2F1	ENSG00000175745.14	ENST00000327111.8:ENST00000615873.1:ENST00000647447.1	protein_coding	protein_coding	protein_coding	protein_coding	0	235	2	7.18679	7.28894	7.39109	2.70977e-4	1.00244e-5	0.00934214	5.13591e-4
chr7	138001003	138001103	3720713	0	-	0.46	(0.45,0.485]	chr7	357311	8	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5:ENST00000468127.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	244	2	7.2605	7.2883	7.3161	0.0010596	2.93313e-5	0.0195612	0.00110673
chr12	50643445	50643545	5230844	0	+	0.38	(0.36,0.39]	chr12	507719	22	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5:ENST00000546719.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	252	2	6.89192	7.288024999999999	7.68413	0.00304757	1.31283e-5	0.0351468	6.24601e-4
chr14	104777528	104777623	6057664	0	-	0.631579	(0.58,1]	chr14	594698	9	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000557552.1:ENST00000683722.1:ENST00000555528.5:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000544168.5:ENST00000554848.5:ENST00000682269.1:ENST00000555380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	233	2	7.27989	7.287965	7.29604	3.49762e-4	6.86847e-6	0.0106878	3.9491e-4
chr1	94463089	94463188	187300	0	+	0.363636	(0.36,0.39]	chr1	20299	41	INTRON	INTRON	ABCD3	ENSG00000117528.14	ENST00000370214.9:ENST00000647998.2:ENST00000315713.5:ENST00000468860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	253	2	6.86273	7.28737	7.71201	0.0032112	1.20737e-5	0.0362232	5.87067e-4
chrX	48464932	48465029	8040337	0	-	0.443299	(0.419,0.45]	chrX	838611	16	INTRON	INTRON	SLC38A5	ENSG00000017483.16	ENST00000595796.5:ENST00000619100.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5:ENST00000416711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	262	2	6.71426	7.28699	7.85972	0.0050028	9.51388e-6	0.0463896	4.9668e-4
chr2	232899772	232899871	1383836	0	-	0.464646	(0.45,0.485]	chr2	147952	45	INTRON	INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000416114.3:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	250	2	6.84509	7.285875	7.72666	0.00259845	6.90138e-6	0.0322672	3.9653e-4
chr19	34227788	34227888	7241876	0	+	0.42	(0.419,0.45]	chr19	741560	5	UTR3	UTR3:EXON_MRNA	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000540746.6:ENST00000433627.9:ENST00000588582.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	2165	2	6.8504	7.285785	7.72117	2.64559e-5	5.90772e-8	0.00292723	1.64814e-5
chr16	53170527	53170627	6455251	0	+	0.41	(0.39,0.419]	chr16	640128	126	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000565832.5:ENST00000564845.5:ENST00000398510.7:ENST00000564255.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	249	2	7.14362	7.28547	7.42732	0.00117867	6.51805e-5	0.020761	0.00199309
chr1	43965100	43965193	110812	0	+	0.44086	(0.419,0.45]	chr1	13723	4	INTRON	INTRON	IPO13	ENSG00000117408.11	ENST00000372343.8	protein_coding	protein_coding	protein_coding	protein_coding	0	251	2	6.95316	7.28537	7.61758	0.00331448	1.94575e-5	0.0368376	8.25524e-4
chr8	726658	726757	3932997	0	-	0.50505	(0.485,0.523]	chr8	376060	103	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	241	2	7.12735	7.2850649999999995	7.44278	0.00126041	1.29007e-5	0.0215793	6.14919e-4
chr20	44357649	44357749	7482484	0	+	0.37	(0.36,0.39]	chr20	779618	14	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5	protein_coding	protein_coding	protein_coding	protein_coding	1	550	2	6.13543	7.284940000000001	8.43445	1.63519e-4	6.91494e-6	0.00716861	3.97174e-4
chr5	648216	648316	2378764	0	+	0.53	(0.523,0.58]	chr5	237645	3	SS5_PROX	SS5_PROX:INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	249	2	6.80756	7.28484	7.76212	0.00236582	4.29035e-6	0.0306624	2.82813e-4
chr13	98415517	98415617	5636424	0	+	0.59	(0.58,1]	chr13	553617	31	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000457029.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	246	2	6.88843	7.2847	7.68097	1.38011e-4	2.76213e-5	0.00651662	0.00106056
chr16	87917663	87917763	6657542	0	-	0.49	(0.485,0.523]	chr16	666059	124	INTRON	INTRON	CA5A	ENSG00000174990.8	ENST00000649158.1:ENST00000648177.1:ENST00000649794.3:ENST00000648022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	712	2	5.56658	7.28441	9.00224	2.53892e-5	5.11447e-6	0.00288101	3.21345e-4
chrX	2382461	2382561	7967668	0	-	0.46	(0.45,0.485]	chrX	834355	441	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	246	2	7.12649	7.283685	7.44088	8.30731e-4	4.40415e-5	0.0171232	0.00149941
chr1	9556700	9556800	20527	0	+	0.41	(0.39,0.419]	chr1	2233	25	INTRON	INTRON	SLC25A33	ENSG00000171612.7	ENST00000302692.7	protein_coding	protein_coding	protein_coding	protein_coding	0	249	2	7.12991	7.283575	7.43724	0.00115704	6.78033e-5	0.0205679	0.00205103
chr1	1052401	1052497	1288	0	+	0.5	(0.485,0.523]	chr1	283	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	1929	2	6.86069	7.282975	7.70526	9.82485e-6	1.79586e-8	0.001858	7.67447e-6
chr9	104829932	104830031	4361426	0	-	0.484848	(0.45,0.485]	chr9	416348	4	INTRON	INTRON	ABCA1	ENSG00000165029.17	ENST00000374736.8:ENST00000678995.1:ENST00000494467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	610	2	5.47054	7.2827649999999995	9.09499	3.76074e-5	2.83706e-5	0.00300073	0.00132758
chr1	26927164	26927264	70126	0	+	0.53	(0.523,0.58]	chr1	7863	26	INTRON	INTRON	NUDC	ENSG00000090273.14	ENST00000435827.6:ENST00000321265.10:ENST00000452707.1	protein_coding	protein_coding	protein_coding	protein_coding	1	521	2	6.14662	7.280735	8.41485	9.05391e-5	3.34822e-6	0.00527541	2.37485e-4
chr7	112115614	112115714	3691664	0	-	0.39	(0.36,0.39]	chr7	354969	1111	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	548	2	6.14095	7.280225	8.4195	1.68416e-4	6.79839e-6	0.00725661	3.93034e-4
chr4	23801229	23801329	2208702	0	-	0.42	(0.419,0.45]	chr4	223250	1	SS5_PROX	SS5_PROX:INTRON	PPARGC1A	ENSG00000109819.9	ENST00000509702.5:ENST00000264867.7:ENST00000613098.4:ENST00000506055.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	248	2	7.03344	7.28018	7.52692	0.00288012	2.53648e-5	0.0341432	9.97976e-4
chr11	485348	485447	4784659	0	+	0.606061	(0.58,1]	chr11	457913	49	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	243	2	6.72242	7.280135	7.83785	0.00121317	1.0051e-6	0.0210863	1.05275e-4
chr6	3352460	3352560	3087014	0	-	0.5	(0.485,0.523]	chr6	299774	281	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000496753.1:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	240	2	7.12735	7.27935	7.43135	0.00126041	1.33768e-5	0.0215793	6.32481e-4
chr16	85451510	85451610	6517586	0	+	0.62	(0.58,1]	chr16	646391	922	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	268	2	6.57822	7.2792650000000005	7.98031	7.66421e-5	6.7909e-5	0.00459677	0.00224403
chr15	22558589	22558689	6059860	0	+	0.43	(0.419,0.45]	chr15	594971	11	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	249	2	6.98042	7.279204999999999	7.57799	0.00316046	2.18502e-5	0.0359603	8.98326e-4
chr12	23863792	23863892	5387660	0	-	0.4	(0.39,0.419]	chr12	528181	172	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000537393.5:ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2:ENST00000538083.1:ENST00000536729.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	250	2	6.89055	7.277604999999999	7.66466	0.00314209	1.40911e-5	0.0358106	6.53552e-4
chr4	67704473	67704572	2049553	0	+	0.40404	(0.39,0.419]	chr4	209665	26	INTRON	INTRON	UBA6-DT	ENSG00000248049.8	ENST00000660649.1:ENST00000654961.1:ENST00000656992.1:ENST00000500538.7:ENST00000498917.2:ENST00000665294.1:ENST00000693410.1:ENST00000667140.1:ENST00000666396.1:ENST00000506606.1:ENST00000664183.1:ENST00000663060.1:ENST00000660972.1:ENST00000665498.1:ENST00000514109.1	lncRNA	lncRNA	lncRNA	lncRNA	0	250	2	7.05935	7.27738	7.49541	0.00103781	8.30081e-5	0.019365	0.00237656
chr13	113215858	113215957	5657366	0	+	0.59596	(0.58,1]	chr13	555523	54	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000488558.2:ENST00000375440.9:ENST00000474116.5:ENST00000494985.5:ENST00000463426.5:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	231	2	7.10823	7.27702	7.44581	5.16402e-4	4.06787e-6	0.0132022	2.73821e-4
chr18	79144956	79145055	7097699	0	+	0.59596	(0.58,1]	chr18	722822	7	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000586672.5:ENST00000590271.5:ENST00000490210.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	233	2	6.97177	7.276625	7.58148	7.01049e-4	2.51802e-6	0.0156107	1.94522e-4
chr16	81615111	81615210	6509447	0	+	0.464646	(0.45,0.485]	chr16	645921	42	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	535	2	6.0188	7.2760549999999995	8.53331	9.15247e-5	6.69208e-6	0.0053051	3.87822e-4
chr16	1726956	1727055	6371205	0	+	0.545455	(0.523,0.58]	chr16	628837	19	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000685565.1:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	243	2	7.10074	7.275005	7.44927	6.69765e-4	3.53278e-5	0.0152294	0.00126913
chr13	112552759	112552858	5752447	0	-	0.656566	(0.58,1]	chr13	563939	42	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000464139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	233	2	7.15814	7.274615000000001	7.39109	2.70977e-4	1.10629e-5	0.00934214	5.52474e-4
chr17	78815733	78815830	6979621	0	-	0.329897	(0.29,0.33]	chr17	712698	8	INTRON	INTRON	USP36	ENSG00000055483.20	ENST00000589225.5:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10:ENST00000588086.6:ENST00000588467.5:ENST00000586066.3:ENST00000590312.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	240	2	7.04434	7.27421	7.50408	0.0012838	1.18228e-5	0.0218621	5.80071e-4
chr4	39632771	39632871	2217500	0	-	0.4	(0.39,0.419]	chr4	224047	203	INTRON	INTRON	SMIM14	ENSG00000163683.12	ENST00000295958.10:ENST00000511809.5:ENST00000510628.1:ENST00000507613.5:ENST00000505729.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	253	2	6.96985	7.274165	7.57848	8.87861e-4	1.07091e-4	0.0177608	0.00288045
chr18	79358155	79358255	7099867	0	+	0.64	(0.58,1]	chr18	722963	96	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000426216.6:ENST00000307671.12:ENST00000490210.6:ENST00000590477.5:ENST00000589951.5:ENST00000588921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	235	2	7.08391	7.274015	7.46412	2.28899e-4	1.42647e-5	0.00852546	6.59187e-4
chr15	82845166	82845265	6340476	0	-	0.454545	(0.45,0.485]	chr15	625077	84	UTR3	UTR3:EXON_MRNA	HOMER2	ENSG00000103942.13	ENST00000558090.2	protein_coding	protein_coding	protein_coding	protein_coding	0	241	2	7.24942	7.273905	7.29839	0.0012056600000000001	2.61251e-5	0.0210584	0.00101706
chr10	31928082	31928182	4661828	0	-	0.75	(0.58,1]	chr10	444985	172	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9	protein_coding	protein_coding	protein_coding	protein_coding	0	231	2	7.05519	7.273825	7.49246	5.81818e-4	3.45114e-6	0.0141176	2.43327e-4
chr7	29383202	29383302	3336185	0	+	0.47	(0.45,0.485]	chr7	322892	20	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5:ENST00000222792.11:ENST00000409350.5:ENST00000409964.6:ENST00000409922.5:ENST00000412536.5:ENST00000478128.6:ENST00000482820.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	242	2	7.20838	7.27302	7.33766	0.00101613	3.43738e-5	0.0191524	0.00124793
chr19	47229341	47229440	7392375	0	-	0.555556	(0.523,0.58]	chr19	768106	5	INTRON	INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	1	626	2	5.77282	7.2726500000000005	8.77248	2.7683e-4	1.4630600000000001e-07	0.00946638	2.96757e-5
chr22	25487625	25487724	7701420	0	+	0.515152	(0.485,0.523]	chr22	805972	261	INTRON	INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000686640.1:ENST00000509460.3:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	263	2	6.71888	7.271825	7.82477	3.07754e-4	1.19549e-4	0.00996934	0.00313373
chr20	44360142	44360241	7482509	0	+	0.373737	(0.36,0.39]	chr20	779618	39	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5	protein_coding	protein_coding	protein_coding	protein_coding	1	544	2	6.21612	7.271225	8.32633	2.02314e-4	5.39174e-6	0.00805364	3.33157e-4
chr21	46548214	46548310	7634393	0	+	0.625	(0.58,1]	chr21	798458	8	INTRON	INTRON	DIP2A	ENSG00000160305.18	ENST00000417564.3:ENST00000651436.1:ENST00000400274.5:ENST00000457905.7	protein_coding	protein_coding	protein_coding	protein_coding	0	236	2	7.03746	7.270855	7.50425	2.08552e-4	1.67087e-5	0.00813372	7.38685e-4
chr12	122092862	122092962	5343517	0	+	0.49	(0.485,0.523]	chr12	521864	132	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	240	2	7.19499	7.270735	7.34648	8.15285e-4	2.80995e-5	0.016997	0.00107401
chr6	100857849	100857946	3213538	0	-	0.453608	(0.45,0.485]	chr6	312007	17	UTR3	UTR3:EXON_MRNA:INTRON	ASCC3	ENSG00000112249.14	ENST00000369162.7:ENST00000324696.8:ENST00000522650.5:ENST00000468245.2:ENST00000324723.10:ENST00000369143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	537	2	6.52179	7.269095	8.0164	2.63728e-4	1.31278e-6	0.00919874	1.2535e-4
chrX	139919448	139919548	8119827	0	-	0.41	(0.39,0.419]	chrX	845912	873	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	254	2	6.92292	7.268420000000001	7.61392	8.3047e-4	1.22286e-4	0.0171232	0.00319203
chr18	69459130	69459230	7083759	0	+	0.37	(0.36,0.39]	chr18	722102	575	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	0	244	2	7.21084	7.26816	7.32548	0.00137926	5.30999e-5	0.0226729	0.00171796
chr2	240520933	240521033	1394644	0	-	0.54	(0.523,0.58]	chr2	149019	4	SS3_PROX	SS3_PROX:INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000405523.7	protein_coding	protein_coding	protein_coding	protein_coding	0	240	2	6.96913	7.267815	7.5665	0.0017332	8.08882e-6	0.0257605	4.41353e-4
chr1	12583552	12583651	402438	0	-	0.535354	(0.523,0.58]	chr1	46222	25	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	263	2	6.70356	7.26778	7.832	3.0665e-4	1.18392e-4	0.00996904	0.00311099
chr2	44429205	44429305	781147	0	+	0.41	(0.39,0.419]	chr2	89654	282	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000403853.7:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	243	2	7.14188	7.2677	7.39352	0.00199601	3.14999e-5	0.0280662	0.00116717
chr17	315436	315536	6821430	0	-	0.57	(0.523,0.58]	chr17	689582	89	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	246	2	6.9801	7.2674900000000004	7.55488	5.40881e-4	5.12704e-5	0.0135788	0.00167326
chr1	167985197	167985297	267639	0	+	0.46	(0.45,0.485]	chr1	31456	98	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5:ENST00000491067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	244	2	7.08374	7.267275	7.45081	8.14729e-4	5.00903e-5	0.016997	0.00164756
chr5	1327517	1327615	2609090	0	-	0.530612	(0.523,0.58]	chr5	259719	12	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	242	2	6.88325	7.2656	7.64795	0.00204616	6.21771e-6	0.0283511	3.67561e-4
chr13	20497793	20497893	5662818	0	-	0.36	(0.33,0.36]	chr13	556208	79	INTRON	INTRON	CRYL1	ENSG00000165475.15	ENST00000643035.1:ENST00000644593.1:ENST00000298248.12:ENST00000644872.1:ENST00000382812.5:ENST00000643750.1:ENST00000644153.1:ENST00000643887.1:ENST00000644167.1:ENST00000646414.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	241	2	7.2601	7.26493	7.26976	0.00121926	3.75598e-5	0.0211633	0.00132661
chr8	143607796	143607878	4097301	0	-	0.439024	(0.419,0.45]	chr8	389391	3	SS5_PROX	SS5_PROX:INTRON	PYCR3	ENSG00000104524.14	ENST00000495276.6:ENST00000220966.10:ENST00000447926.6:ENST00000433751.5:ENST00000377579.7:ENST00000462036.5:ENST00000482616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	252	2	6.80854	7.2648600000000005	7.72118	0.00425752	1.43448e-5	0.0422596	6.60585e-4
chr15	60493865	60493965	6284445	0	-	0.4	(0.39,0.419]	chr15	619448	57	UTR3	UTR3:EXON_MRNA	RORA	ENSG00000069667.16	ENST00000335670.11	protein_coding	protein_coding	protein_coding	protein_coding	1	772	2	6.58111	7.26483	7.94855	8.77565e-5	5.98004e-6	0.00519882	3.5765e-4
chr21	45208635	45208735	7630027	0	+	0.5	(0.485,0.523]	chr21	797621	35	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5:ENST00000629643.2:ENST00000360697.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	240	2	6.9556	7.264455	7.57331	0.00176368	8.51093e-6	0.0260917	4.57175e-4
chr12	132528687	132528786	5352902	0	+	0.616162	(0.58,1]	chr12	523670	3	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	232	2	7.11406	7.263195	7.41233	2.58019e-4	1.2868e-5	0.00908087	6.14919e-4
chr11	72040404	72040504	5067512	0	-	0.53	(0.523,0.58]	chr11	493004	4	SS5_PROX	SS5_PROX:INTRON	NUMA1	ENSG00000137497.19	ENST00000393695.8:ENST00000358965.10:ENST00000351960.10:ENST00000613205.4:ENST00000542977.5:ENST00000537217.5:ENST00000540843.5:ENST00000534987.5:ENST00000536119.5:ENST00000544238.5:ENST00000543937.5:ENST00000543009.5:ENST00000537930.5:ENST00000535947.5:ENST00000535087.5:ENST00000368959.9:ENST00000541719.5:ENST00000366394.7:ENST00000541641.5:ENST00000537905.5:ENST00000535111.5:ENST00000535838.5:ENST00000546131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	241	2	7.0862	7.262734999999999	7.43927	6.83398e-4	3.69579e-5	0.0153809	0.00131447
chr5	74823674	74823774	2692293	0	-	0.46	(0.45,0.485]	chr5	265977	93	INTRON	INTRON	FAM169A	ENSG00000198780.13	ENST00000389156.9:ENST00000510496.5:ENST00000687041.1:ENST00000514215.5:ENST00000510609.5:ENST00000513277.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	239	2	7.22649	7.26244	7.29839	0.00126021	2.61251e-5	0.0215793	0.00101706
chr2	105329224	105329324	1242828	0	-	0.53	(0.523,0.58]	chr2	134006	2	SS5_PROX	SS5_PROX:INTRON	TGFBRAP1	ENSG00000135966.13	ENST00000393359.7	protein_coding	protein_coding	protein_coding	protein_coding	0	237	2	7.24638	7.261950000000001	7.27752	0.00100536	2.03194e-5	0.0190855	8.47843e-4
chr1	24557368	24557468	62453	0	+	0.53	(0.523,0.58]	chr1	6701	8	INTRON	INTRON	NCMAP	ENSG00000184454.7	ENST00000374392.3	protein_coding	protein_coding	protein_coding	protein_coding	0	403	2	5.73609	7.261089999999999	8.78609	0.0017613	4.10262e-5	0.0211077	0.00355088
chr17	55324697	55324795	6757717	0	+	0.336735	(0.33,0.36]	chr17	681735	40	UTR3	UTR3:EXON_MRNA	HLF	ENSG00000108924.14	ENST00000226067.10	protein_coding	protein_coding	protein_coding	protein_coding	3	2299	2	7.1802	7.26105	7.3419	5.01517e-6	2.01993e-7	0.00135941	3.6561e-5
chr9	19091219	19091316	4283213	0	-	0.515464	(0.485,0.523]	chr9	409349	13	INTRON	INTRON	HAUS6	ENSG00000147874.11	ENST00000380502.8:ENST00000380496.5	protein_coding	protein_coding	protein_coding	protein_coding	0	263	2	6.49701	7.260994999999999	8.02498	0.00420849	1.96427e-6	0.0421454	1.6437e-4
chr14	54776840	54776940	5821562	0	+	0.47	(0.45,0.485]	chr14	569151	3	SS5_PROX	SS5_PROX:INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555192.1:ENST00000556069.5:ENST00000553988.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	240	2	7.19505	7.260985	7.32692	0.00103756	3.57931e-5	0.019365	0.00128261
chr1	5868791	5868890	386501	0	-	0.545455	(0.523,0.58]	chr1	44370	5	INTRON	INTRON	NPHP4	ENSG00000131697.18	ENST00000378156.9:ENST00000478423.6:ENST00000489180.6:ENST00000378169.7:ENST00000468253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	241	2	6.88325	7.260635000000001	7.63802	0.00204616	6.42092e-6	0.0283511	3.76263e-4
chr16	8682260	8682359	6381212	0	+	0.464646	(0.45,0.485]	chr16	631145	72	INTRON	INTRON	ABAT	ENSG00000183044.12	ENST00000564714.5:ENST00000268251.13:ENST00000563992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	288	2	6.25887	7.26053	8.26219	0.00748565	1.24365e-6	0.0576451	1.20802e-4
chr3	61813581	61813681	1489137	0	+	0.34	(0.33,0.36]	chr3	160092	423	INTRON	INTRON	PTPRG	ENSG00000144724.20	ENST00000474889.6:ENST00000295874.14	protein_coding	protein_coding	protein_coding	protein_coding	0	257	2	6.63255	7.260175	7.8878	0.0040075	5.56417e-6	0.0410079	3.40678e-4
chr19	6239489	6239589	7321407	0	-	0.6	(0.58,1]	chr19	756093	84	INTRON	INTRON	MLLT1	ENSG00000130382.9	ENST00000252674.9	protein_coding	protein_coding	protein_coding	protein_coding	0	230	2	7.17254	7.260085	7.34763	2.99474e-4	1.05286e-5	0.00982269	5.33404e-4
chr1	17675384	17675484	54965	0	+	0.58	(0.523,0.58]	chr1	5603	104	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	523	2	5.93992	7.259270000000001	8.57862	6.39285e-5	6.6255e-6	0.00445242	3.85278e-4
chr17	340354	340453	6821692	0	-	0.676768	(0.58,1]	chr17	689625	8	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000577079.5:ENST00000573780.5:ENST00000575130.5:ENST00000575634.5	protein_coding	protein_coding	protein_coding	protein_coding	0	287	2	6.34387	7.2585	8.17313	1.61506e-4	4.27594e-5	0.00387712	0.00362006
chr2	3295401	3295501	1081061	0	-	0.59	(0.58,1]	chr2	117633	127	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	228	2	7.2209	7.25847	7.29604	4.00118e-4	6.86847e-6	0.0114335	3.9491e-4
chr22	50234125	50234225	7827202	0	-	0.59	(0.58,1]	chr22	821200	2	INTRON	INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	230	2	7.15814	7.258380000000001	7.35862	2.92006e-4	1.10629e-5	0.00970248	5.52474e-4
chr17	76548091	76548190	6977086	0	-	0.40404	(0.39,0.419]	chr17	712268	18	INTRON	INTRON	CYGB:ENSG00000267546	ENSG00000161544.10:ENSG00000267546.2	ENST00000589145.1:ENST00000589963.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	246	2	6.89055	7.258335000000001	7.62612	0.00314209	1.58122e-5	0.0358106	7.12006e-4
chr17	63834247	63834328	6945043	0	-	0.641975	(0.58,1]	chr17	708420	2	CDS	CDS:UTR3:EXON_MRNA	SMARCD2	ENSG00000108604.17	ENST00000448276.7:ENST00000323347.14:ENST00000225742.13:ENST00000450364.3:ENST00000584483.5:ENST00000584400.5:ENST00000578234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	260	2	6.39965	7.25798	8.11631	0.00241374	3.64876e-7	0.0309229	5.39907e-5
chr17	81138798	81138898	6982890	0	-	0.58	(0.523,0.58]	chr17	713268	39	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	520	2	5.97423	7.25798	8.54173	6.91544e-5	5.9189e-6	0.0046493	3.55782e-4
chr18	80186436	80186535	7183144	0	-	0.575758	(0.523,0.58]	chr18	730364	29	INTRON	INTRON	PARD6G	ENSG00000178184.16	ENST00000353265.8:ENST00000470488.2:ENST00000463384.1	protein_coding	protein_coding	protein_coding	protein_coding	0	236	2	7.13932	7.257875	7.37643	0.00124255	1.48581e-5	0.0214257	6.80263e-4
chr7	47353228	47353327	3587323	0	-	0.565657	(0.523,0.58]	chr7	346030	65	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	236	2	7.21157	7.25723	7.30289	0.00107726	1.87561e-5	0.0197563	8.04567e-4
chr6	169621851	169621951	3304075	0	-	0.43	(0.419,0.45]	chr6	319826	78	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	261	2	6.61339	7.2569	7.90041	0.0059347	8.42749e-6	0.0506158	4.54808e-4
chr13	26362161	26362261	5552271	0	+	0.42	(0.419,0.45]	chr13	547934	79	INTRON	INTRON	CDK8	ENSG00000132964.12	ENST00000536792.5:ENST00000381527.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	243	2	7.22756	7.25565	7.28374	0.00184728	6.01346e-5	0.0268409	0.00187442
chr22	32671358	32671458	7791372	0	-	0.5	(0.485,0.523]	chr22	817442	411	INTRON	INTRON	SYN3	ENSG00000185666.15	ENST00000358763.7:ENST00000462268.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	260	2	6.51617	7.255205	7.99424	0.00406194	2.17299e-6	0.0413652	1.76047e-4
chr17	37213175	37213275	6891323	0	-	0.49	(0.485,0.523]	chr17	699747	23	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000614450.4:ENST00000612120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	236	2	7.2237	7.25517	7.28664	0.00104165	2.11074e-5	0.0193905	8.73346e-4
chr18	80185938	80186038	7183139	0	-	0.57	(0.523,0.58]	chr18	730364	24	INTRON	INTRON	PARD6G	ENSG00000178184.16	ENST00000353265.8:ENST00000470488.2:ENST00000463384.1	protein_coding	protein_coding	protein_coding	protein_coding	0	239	2	7.10074	7.2547999999999995	7.40886	7.2654e-4	3.53278e-5	0.0158761	0.00126913
chr12	106957149	106957249	5320076	0	+	0.54	(0.523,0.58]	chr12	518155	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TMEM263	ENSG00000151135.10	ENST00000548125.5:ENST00000547242.5:ENST00000551489.5:ENST00000550344.5:ENST00000280756.9:ENST00000547081.1	protein_coding	protein_coding	protein_coding	protein_coding	0	261	2	6.68438	7.25436	7.82434	3.11537e-4	1.2535e-4	0.0100453	0.00324328
chr13	19987564	19987664	5543085	0	+	0.49	(0.485,0.523]	chr13	547198	171	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382881.7:ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000620447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	236	2	7.24681	7.253925000000001	7.26104	9.94865e-4	2.28684e-5	0.0189547	9.27248e-4
chr1	227767542	227767630	357648	0	+	0.431818	(0.419,0.45]	chr1	40319	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SNAP47	ENSG00000143740.15	ENST00000681827.1:ENST00000679575.1:ENST00000680854.1:ENST00000681006.1:ENST00000366760.5:ENST00000681447.1:ENST00000680992.1:ENST00000680695.1:ENST00000366759.9:ENST00000315781.10:ENST00000681685.1:ENST00000681678.1:ENST00000681242.1:ENST00000681149.1:ENST00000418653.6:ENST00000617596.5:ENST00000681929.1:ENST00000478768.3:ENST00000426344.6:ENST00000680202.1:ENST00000679561.1:ENST00000681465.1:ENST00000491439.2:ENST00000681554.1:ENST00000681252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	243	2	7.03344	7.253705	7.47397	0.00288012	2.959e-5	0.0341432	0.00111477
chr12	122094862	122094962	5343537	0	+	0.5	(0.485,0.523]	chr12	521864	152	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	242	2	7.0076	7.253135	7.49867	5.99913e-4	5.00839e-5	0.0143535	0.00164756
chr6	144293903	144294003	3019946	0	+	0.23	[0,0.29]	chr6	295138	16	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1	protein_coding	protein_coding	protein_coding	protein_coding	0	231	2	7.10146	7.253055	7.40465	6.02027e-4	9.97988e-6	0.0143848	5.13591e-4
chr19	17484717	17484813	7220780	0	+	0.447917	(0.419,0.45]	chr19	738265	2	INTRON	INTRON	SLC27A1	ENSG00000130304.17	ENST00000600277.5:ENST00000598424.5:ENST00000252595.12:ENST00000599380.5:ENST00000600297.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	242	2	7.23929	7.252364999999999	7.26544	0.00200016	5.39706e-5	0.0280981	0.00173477
chr11	115254536	115254636	5128628	0	-	0.43	(0.419,0.45]	chr11	498097	137	INTRON	INTRON	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000541434.5:ENST00000543540.5:ENST00000545094.5:ENST00000543249.1:ENST00000540951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	246	2	7.06522	7.252205	7.43919	0.00139594	9.52125e-5	0.0228423	0.00262959
chr6	13590976	13591072	2855857	0	+	0.364583	(0.36,0.39]	chr6	279046	16	INTRON	INTRON	SIRT5	ENSG00000124523.17	ENST00000680432.1:ENST00000681012.1:ENST00000397350.7:ENST00000680442.1:ENST00000680754.1:ENST00000679658.1:ENST00000681243.1:ENST00000680747.1:ENST00000681818.1:ENST00000680402.1:ENST00000679663.1:ENST00000379250.10:ENST00000680852.1:ENST00000679922.1:ENST00000681231.1:ENST00000359782.8:ENST00000606117.2:ENST00000379262.8:ENST00000681905.1:ENST00000680937.1:ENST00000680151.1:ENST00000680707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	241	2	7.04271	7.252025	7.46134	0.00232085	2.54957e-5	0.030354	0.00100208
chr3	12966489	12966588	1688794	0	-	0.515152	(0.485,0.523]	chr3	176520	55	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	246	2	6.91216	7.25202	7.59188	4.96381e-4	6.69654e-5	0.0129428	0.00203052
chr4	153487885	153487985	2151097	0	+	0.56	(0.523,0.58]	chr4	217962	136	INTRON	INTRON	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000445960.5:ENST00000409959.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	235	2	7.10179	7.250965000000001	7.40014	0.00133774	1.37794e-5	0.0223452	6.44262e-4
chr10	72060994	72061092	4707388	0	-	0.663265	(0.58,1]	chr10	448659	21	UTR3	UTR3:EXON_MRNA	SPOCK2	ENSG00000107742.14	ENST00000373109.7:ENST00000317376.8	protein_coding	protein_coding	protein_coding	protein_coding	0	258	2	6.39965	7.250495000000001	8.10134	0.00241374	3.85454e-7	0.0309229	5.6048e-5
chr4	6665207	6665306	2186189	0	-	0.454545	(0.45,0.485]	chr4	221877	28	INTRON	INTRON	LINC02482	ENSG00000251580.3	ENST00000647523.2:ENST00000667300.1	lncRNA	lncRNA	lncRNA	lncRNA	0	238	2	7.01529	7.250245	7.4852	0.00188703	1.469e-5	0.0271069	6.74072e-4
chr21	43974569	43974668	7625537	0	+	0.353535	(0.33,0.36]	chr21	796959	27	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000398063.6:ENST00000398058.5:ENST00000546158.1:ENST00000479117.5:ENST00000467358.5:ENST00000484865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	243	2	6.87266	7.25014	7.62762	0.00258098	1.23982e-5	0.0321738	5.98169e-4
chr5	856276	856376	2607917	0	-	0.44	(0.419,0.45]	chr5	259417	53	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	0	272	2	6.44748	7.25005	8.05262	0.00782663	5.34268e-6	0.0592048	3.30369e-4
chr4	128859332	128859430	2132081	0	+	0.438776	(0.419,0.45]	chr4	216567	15	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	0	247	2	6.85347	7.250025	7.64658	0.00394037	1.78696e-5	0.0406053	7.77694e-4
chr21	45474579	45474678	7631012	0	+	0.606061	(0.58,1]	chr21	797674	2	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	2	771	2	5.65928	7.249245	8.83921	5.05242e-5	2.47538e-8	0.00393085	9.49156e-6
chr13	113537864	113537963	5658660	0	+	0.50505	(0.485,0.523]	chr13	555722	27	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	235	2	7.2237	7.248794999999999	7.27389	0.00104165	2.19669e-5	0.0193905	8.99734e-4
chr19	36214121	36214221	7367436	0	-	0.54	(0.523,0.58]	chr19	763877	1	SS5_PROX	SS5_PROX:INTRON	ZNF565	ENSG00000196357.12	ENST00000304116.10:ENST00000355114.9:ENST00000392173.6:ENST00000591473.1:ENST00000587803.1:ENST00000586648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	237	2	7.12939	7.24834	7.36729	7.89787e-4	3.23178e-5	0.0167041	0.00118877
chr21	43920115	43920215	7624981	0	+	0.56	(0.523,0.58]	chr21	796899	33	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5	protein_coding	protein_coding	protein_coding	protein_coding	0	237	2	7.12939	7.24834	7.36729	7.89787e-4	3.23178e-5	0.0167041	0.00118877
chr7	4737538	4737638	3309894	0	+	0.52	(0.485,0.523]	chr7	320808	543	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	0	238	2	7.09712	7.248065	7.39901	7.33641e-4	3.80472e-5	0.0159757	0.00134128
chr2	3294802	3294902	1081055	0	-	0.58	(0.523,0.58]	chr2	117633	121	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	236	2	7.17132	7.247904999999999	7.32449	8.60444e-4	2.83567e-5	0.0174691	0.00107991
chr4	26324349	26324449	2023052	0	+	0.42	(0.419,0.45]	chr4	206760	10	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	260	2	6.76374	7.247695	7.73165	8.17581e-4	2.19456e-4	0.0170128	0.00483494
chr1	43596753	43596852	107418	0	+	0.525253	(0.523,0.58]	chr1	13240	38	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	1	615	2	5.73508	7.246935	8.75879	2.99628e-4	1.53296e-7	0.0098239	3.04321e-5
chr13	113011966	113012065	5655743	0	+	0.59596	(0.58,1]	chr13	555138	96	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	235	2	6.93984	7.246370000000001	7.5529	1.86235e-4	2.32442e-5	0.00769604	9.36605e-4
chr9	127549459	127549559	4411998	0	-	0.53	(0.523,0.58]	chr9	420485	173	INTRON	INTRON	NIBAN2	ENSG00000136830.12	ENST00000373314.7:ENST00000373312.4:ENST00000478917.1:ENST00000468379.1:ENST00000484348.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	515	2	5.97423	7.246205	8.51818	7.27072e-5	5.9189e-6	0.00477445	3.55782e-4
chr4	3363197	3363296	2005068	0	+	0.363636	(0.36,0.39]	chr4	204663	198	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	242	2	6.93464	7.24566	7.55668	0.00282234	1.92152e-5	0.0337022	8.19063e-4
chr6	16308355	16308455	3099913	0	-	0.52	(0.485,0.523]	chr6	300832	11	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8	protein_coding	protein_coding	protein_coding	protein_coding	0	241	2	6.99213	7.2454	7.49867	5.99913e-4	5.25088e-5	0.0143535	0.00170211
chr10	73707359	73707458	4716779	0	-	0.565657	(0.523,0.58]	chr10	449734	19	INTRON	INTRON	BMS1P4:ENSG00000272140	ENSG00000271816.1:ENSG00000272140.2	ENST00000580790.1:ENST00000415917.2:ENST00000580623.1	lncRNA	lncRNA	lncRNA	lncRNA	0	238	2	7.07151	7.24529	7.41907	7.11773e-4	3.86786e-5	0.0157569	0.00135841
chr3	120079272	120079371	1886973	0	-	0.343434	(0.33,0.36]	chr3	191436	46	INTRON	INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000650344.2:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000677128.1:ENST00000677530.1:ENST00000677034.1:ENST00000679131.1:ENST00000676743.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	239	2	7.15489	7.24516	7.33543	0.00107451	5.129e-5	0.0197424	0.00167326
chr7	98317456	98317556	3648372	0	-	0.65	(0.58,1]	chr7	351234	1	SS3_PROX	SS3_PROX:INTRON	BAIAP2L1	ENSG00000006453.14	ENST00000005260.9:ENST00000462558.5:ENST00000473569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	232	2	7.00565	7.24499	7.48433	2.18425e-4	1.8613e-5	0.00835357	8.01738e-4
chr20	34566151	34566251	7547089	0	-	0.56	(0.523,0.58]	chr20	787854	48	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	0	236	2	7.1435	7.244775000000001	7.34605	8.24125e-4	3.0928e-5	0.0170688	0.00115425
chr18	74915620	74915720	7092438	0	+	0.52	(0.485,0.523]	chr18	722466	98	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	251	2	6.79219	7.244255	7.69632	4.00919e-4	9.60927e-5	0.0114335	0.00264781
chr17	81231178	81231237	6983573	0	-	0.525424	(0.523,0.58]	chr17	713417	1	SS5_PROX	SS5_PROX:INTRON	TEPSIN	ENSG00000167302.11	ENST00000300714.7:ENST00000637944.2:ENST00000573295.5:ENST00000576090.5:ENST00000571115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	235	2	6.98295	7.242595	7.50224	0.00168728	9.94429e-6	0.0254298	5.11988e-4
chr16	85451610	85451710	6517587	0	+	0.63	(0.58,1]	chr16	646391	923	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	271	2	6.44222	7.24259	8.04296	1.18459e-4	5.84601e-5	0.0042453	0.00311099
chr16	1738323	1738421	6371322	0	+	0.602041	(0.58,1]	chr16	628851	29	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	564	2	5.61841	7.2422249999999995	8.86604	1.68718e-4	2.23715e-8	0.00726612	8.84048e-6
chr8	143607561	143607632	4097298	0	-	0.492958	(0.485,0.523]	chr8	389390	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PYCR3	ENSG00000104524.14	ENST00000495276.6:ENST00000220966.10:ENST00000447926.6:ENST00000433751.5:ENST00000377579.7:ENST00000462036.5:ENST00000482616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	236	2	6.9415	7.241635	7.54177	0.00181258	9.4141e-6	0.0264638	4.92849e-4
chr14	65102428	65102517	5996371	0	-	0.561798	(0.523,0.58]	chr14	588124	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MAX	ENSG00000125952.20	ENST00000618858.4:ENST00000358402.8:ENST00000394606.6:ENST00000358664.9:ENST00000555932.5:ENST00000284165.10:ENST00000557277.5:ENST00000556892.5:ENST00000556979.5:ENST00000555667.5:ENST00000557746.5:ENST00000556443.5:ENST00000246163.2:ENST00000556702.1:ENST00000554709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	1797	2	6.93608	7.240914999999999	7.54575	6.05364e-6	4.53484e-8	0.00149871	1.41563e-5
chr9	123902205	123902305	4401616	0	-	0.34	(0.33,0.36]	chr9	419733	228	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	0	266	2	6.6152	7.240845	7.86649	3.78793e-4	2.41669e-4	0.011147	0.00518926
chr14	89335056	89335156	6027453	0	-	0.35	(0.33,0.36]	chr14	591456	14	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	241	2	7.04139	7.2400199999999995	7.43865	8.79855e-4	7.15503e-5	0.0176886	0.00213856
chr9	134413286	134413385	4261566	0	+	0.484848	(0.45,0.485]	chr9	406352	38	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000481739.2:ENST00000356384.4:ENST00000672570.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	244	2	6.93131	7.2389	7.54649	6.74992e-4	7.8924e-5	0.0153083	0.0022885
chr5	1465769	1465865	2609381	0	-	0.46875	(0.45,0.485]	chr5	259790	16	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000503252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	766	2	6.6963	7.23875	7.7812	4.82359e-5	5.80934e-6	0.00382447	3.51715e-4
chr2	235538335	235538435	1062981	0	+	0.46	(0.45,0.485]	chr2	115656	134	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	256	2	6.7242	7.238675	7.75315	4.47844e-4	1.44769e-4	0.0121721	0.00359413
chr20	62337089	62337188	7584281	0	-	0.565657	(0.523,0.58]	chr20	792665	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LAMA5	ENSG00000130702.15	ENST00000252999.7:ENST00000474128.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	241	2	6.76017	7.237905	7.71564	0.00258949	4.99148e-6	0.0321874	3.15032e-4
chr18	47820845	47820945	7156575	0	-	0.36	(0.33,0.36]	chr18	727697	120	UTR3	UTR3:EXON_MRNA	SMAD2	ENSG00000175387.16	ENST00000262160.11	protein_coding	protein_coding	protein_coding	protein_coding	1	523	2	6.16567	7.2375	8.30933	1.55165e-4	5.2273e-6	0.00693487	3.2605e-4
chr19	41905512	41905594	7264281	0	+	0.621951	(0.58,1]	chr19	745343	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARHGEF1	ENSG00000076928.18	ENST00000600274.5:ENST00000354532.8:ENST00000599846.5:ENST00000347545.8:ENST00000378152.8:ENST00000337665.8:ENST00000599589.5:ENST00000595897.5:ENST00000595723.5:ENST00000600517.1:ENST00000598587.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	231	2	6.7889099999999996	7.237225	7.68554	0.00104954	1.7376e-6	0.0194601	1.51436e-4
chr1	1341366	1341466	381190	0	-	0.55	(0.523,0.58]	chr1	43163	3	SS5_PROX	SS5_PROX:INTRON	DVL1	ENSG00000107404.21	ENST00000378891.9:ENST00000378888.10	protein_coding	protein_coding	protein_coding	protein_coding	1	512	2	6.48325	7.23712	7.99099	2.2056e-4	1.08577e-6	0.00839442	1.10076e-4
chr19	47227957	47228057	7392360	0	-	0.65	(0.58,1]	chr19	768099	4	SS5_PROX	SS5_PROX:INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	0	225	2	7.22874	7.23676	7.24478	3.78937e-4	8.67357e-6	0.011147	4.6303e-4
chr7	47351834	47351933	3587309	0	-	0.575758	(0.523,0.58]	chr7	346030	51	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	3	1780	2	6.98968	7.236385	7.48309	6.946e-6	3.76432e-8	0.00158369	1.23719e-5
chrX	9531388	9531488	7843110	0	+	0.36	(0.33,0.36]	chrX	822407	3	SS5_PROX	SS5_PROX:INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1	protein_coding	protein_coding	protein_coding	protein_coding	0	236	2	7.21265	7.236375000000001	7.2601	0.0013602	3.75598e-5	0.0224846	0.00132661
chr22	46639157	46639256	7744569	0	+	0.444444	(0.419,0.45]	chr22	812052	8	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	0	239	2	7.12179	7.23597	7.35015	0.0024648	4.23276e-5	0.0313232	0.00145731
chr9	124654807	124654907	4404193	0	-	0.34	(0.33,0.36]	chr9	419893	591	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	0	237	2	6.99962	7.235835	7.47205	0.0020365	1.9892e-5	0.0283511	8.36871e-4
chr14	55581451	55581550	5823606	0	+	0.424242	(0.419,0.45]	chr14	569329	7	INTRON	INTRON	KTN1	ENSG00000126777.18	ENST00000557267.1:ENST00000395314.8:ENST00000554567.1:ENST00000555498.5:ENST00000438792.6:ENST00000459737.5:ENST00000395308.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	244	2	6.85347	7.235525	7.61758	0.00394037	1.94575e-5	0.0406053	8.25524e-4
chr9	131586165	131586262	4418978	0	-	0.56701	(0.523,0.58]	chr9	421909	12	INTRON	INTRON	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000372189.7:ENST00000683357.1:ENST00000372190.7	protein_coding	protein_coding	protein_coding	protein_coding	0	259	2	6.64525	7.234795	7.82434	3.11537e-4	1.40789e-4	0.0100453	0.00351181
chr16	89303914	89304013	6659848	0	-	0.606061	(0.58,1]	chr16	666658	19	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	626	2	6.05464	7.234005	8.41337	2.3898e-5	3.3626e-7	0.00282051	5.10793e-5
chr17	3824280	3824375	6838729	0	-	0.273684	[0,0.29]	chr17	691919	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NCBP3	ENSG00000074356.17	ENST00000389005.6:ENST00000574911.5:ENST00000575815.5:ENST00000577169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	1226	2	7.13314	7.234	7.33486	4.99171e-6	4.04756e-8	0.00135941	1.30725e-5
chr11	791146	791242	4969402	0	-	0.604167	(0.58,1]	chr11	480765	8	UTR3	UTR3:EXON_MRNA	SLC25A22	ENSG00000177542.11	ENST00000628067.3:ENST00000320230.9	protein_coding	protein_coding	protein_coding	protein_coding	1	468	2	6.16331	7.233625	8.30394	3.11715e-5	1.28491e-6	0.00310936	1.23615e-4
chr2	3295301	3295401	1081060	0	-	0.56	(0.523,0.58]	chr2	117633	126	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	237	2	7.02653	7.2329	7.43927	6.83398e-4	4.44459e-5	0.0153809	0.00150854
chr9	136007432	136007531	4432146	0	-	0.59596	(0.58,1]	chr9	423617	10	UTR3	UTR3:EXON_MRNA	NACC2	ENSG00000148411.8	ENST00000277554.4:ENST00000371753.5	protein_coding	protein_coding	protein_coding	protein_coding	1	569	2	5.49277	7.23275	8.97273	2.27154e-4	1.4947e-8	0.00851514	6.85919e-6
chr7	66662979	66663078	3382034	0	+	0.545455	(0.523,0.58]	chr7	326325	80	INTRON	INTRON	ENSG00000226824	ENSG00000226824.8	ENST00000693151.1:ENST00000656515.2:ENST00000448096.1:ENST00000439360.5:ENST00000657342.1:ENST00000428557.1	lncRNA	lncRNA	lncRNA	lncRNA	1	502	2	6.21135	7.232215	8.25308	1.27418e-4	2.69995e-6	0.00624469	2.03979e-4
chr19	2204163	2204262	7188900	0	+	0.606061	(0.58,1]	chr19	731581	10	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	0	244	2	6.7222	7.231595	7.74099	1.19833e-4	4.79419e-5	0.00607292	0.00159846
chr19	7640252	7640307	7199318	0	+	0.4	(0.39,0.419]	chr19	733971	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STXBP2	ENSG00000076944.17	ENST00000593535.5:ENST00000595950.5:ENST00000221283.10:ENST00000441779.6:ENST00000597068.5:ENST00000414284.6:ENST00000599737.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	242	2	6.84654	7.231434999999999	7.61633	0.00339831	1.62815e-5	0.0373002	7.25583e-4
chr10	103718678	103718777	4757287	0	-	0.50505	(0.485,0.523]	chr10	454791	252	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	614	2	5.9461	7.231255000000001	8.51641	1.90428e-4	3.83321e-7	0.00778805	5.58346e-5
chr7	47362985	47363084	3587421	0	-	0.484848	(0.45,0.485]	chr7	346030	163	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	689	2	5.89682	7.231235	8.56565	8.56025e-5	2.17022e-6	0.00513437	1.76047e-4
chr15	20441541	20441640	6202462	0	-	0.515152	(0.485,0.523]	chr15	610287	5	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000424611.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	232	2	7.20021	7.230625	7.26104	0.00109136	2.28684e-5	0.0198839	9.27248e-4
chr2	87529015	87529115	847940	0	+	0.47	(0.45,0.485]	chr2	95749	76	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000642451.1:ENST00000644478.1:ENST00000409139.6:ENST00000644125.1:ENST00000643743.1:ENST00000643276.1:ENST00000409898.2:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000646636.1:ENST00000629257.1:ENST00000409054.2	lncRNA	lncRNA	lncRNA	lncRNA	0	239	2	6.82995	7.23043	7.63091	0.00267274	9.3252e-6	0.0327654	4.88957e-4
chr17	77485026	77485126	6805232	0	+	0.54	(0.523,0.58]	chr17	686821	10	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	508	2	5.981	7.23034	8.47968	7.89055e-5	5.78858e-6	0.00494046	3.51119e-4
chr22	42648794	42648894	7821320	0	-	0.57	(0.523,0.58]	chr22	820392	1	SS5_PROX	SS5_PROX:INTRON	CYB5R3	ENSG00000100243.22	ENST00000693367.1:ENST00000352397.10:ENST00000361740.9:ENST00000692152.1:ENST00000693363.1:ENST00000689795.1:ENST00000686523.1:ENST00000407332.6:ENST00000687183.1:ENST00000691295.1:ENST00000690835.1:ENST00000689195.1:ENST00000688244.1:ENST00000690993.1:ENST00000689239.1:ENST00000692344.1:ENST00000686129.1:ENST00000466276.2:ENST00000693716.1:ENST00000688004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	557	2	5.54266	7.230284999999999	8.91791	3.0907e-5	2.40322e-5	0.00310631	9.60063e-4
chr9	135837662	135837762	4431123	0	-	0.48	(0.45,0.485]	chr9	423507	97	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	237	2	6.88956	7.22991	7.57026	0.00239127	1.12733e-5	0.0308863	5.59324e-4
chr3	184319424	184319506	1643922	0	+	0.463415	(0.45,0.485]	chr3	172597	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000444134.5:ENST00000442406.5:ENST00000450424.5:ENST00000421110.5:ENST00000435046.7:ENST00000382330.7:ENST00000413967.5:ENST00000426123.5:ENST00000346169.7:ENST00000350481.9:ENST00000440448.5:ENST00000427141.6:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000456033.5:ENST00000411531.5:ENST00000444861.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	515	2	6.03768	7.22967	8.42166	1.15241e-4	6.29954e-6	0.00597643	3.71092e-4
chrX	9689062	9689158	7844705	0	+	0.53125	(0.523,0.58]	chrX	822468	4	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000645686.1:ENST00000646640.1:ENST00000683056.1:ENST00000647060.1:ENST00000684110.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	235	2	7.0566700000000004	7.227625	7.39858	7.41711e-4	4.04959e-5	0.0160724	0.00140723
chr3	47443224	47443302	1760985	0	-	0.474359	(0.45,0.485]	chr3	181606	4	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000648151.1:ENST00000416208.5:ENST00000416847.5:ENST00000495603.2:ENST00000448217.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	237	2	7.05451	7.2274899999999995	7.40047	8.99052e-4	5.46803e-5	0.0178386	0.00175188
chr6	31735461	31735561	3119440	0	-	0.55	(0.523,0.58]	chr6	303332	8	INTRON	INTRON	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000616760.1:ENST00000375784.8	protein_coding	protein_coding	protein_coding	protein_coding	1	506	2	5.99444	7.22724	8.46004	8.22652e-5	5.53809e-6	0.00502313	3.397e-4
chr9	93541122	93541222	4183396	0	+	0.39	(0.36,0.39]	chr9	397655	84	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000427765.1	protein_coding	protein_coding	protein_coding	protein_coding	0	242	2	6.8178	7.2271149999999995	7.63643	0.00347933	1.51454e-5	0.0378956	6.8895e-4
chr2	87475256	87475355	847394	0	+	0.525253	(0.523,0.58]	chr2	95712	20	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000414030.6	lncRNA	lncRNA	lncRNA	lncRNA	0	231	2	7.19977	7.22573	7.25169	0.00110271	2.20409e-5	0.020005	9.00215e-4
chr19	36488912	36489012	7369763	0	-	0.57	(0.523,0.58]	chr19	764032	1	SS5_PROX	SS5_PROX:INTRON	ZNF566	ENSG00000186017.16	ENST00000493391.6:ENST00000392170.7:ENST00000452939.7:ENST00000427002.2:ENST00000424129.7:ENST00000434377.6:ENST00000472909.6:ENST00000460937.5:ENST00000480361.1:ENST00000494354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	237	2	6.79194	7.224880000000001	7.65782	0.00243746	6.02213e-6	0.0311222	3.58754e-4
chr1	1053074	1053171	1295	0	+	0.597938	(0.58,1]	chr1	283	12	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	486	2	5.82574	7.22478	8.62382	1.42931e-5	4.34614e-6	0.0021856000000000002	2.84901e-4
chr4	2826867	2826957	2000388	0	+	0.5	(0.485,0.523]	chr4	203975	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SH3BP2	ENSG00000087266.17	ENST00000503393.8:ENST00000504294.5:ENST00000508385.5:ENST00000511663.5:ENST00000512014.5:ENST00000435136.8:ENST00000511185.5:ENST00000511747.6:ENST00000356331.9:ENST00000515737.5:ENST00000515183.5:ENST00000505941.5:ENST00000510204.5:ENST00000515802.5:ENST00000504450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	240	2	6.72812	7.224774999999999	7.72143	0.00272951	5.28503e-6	0.0331786	3.28254e-4
chr11	68269468	68269567	5057318	0	-	0.535354	(0.523,0.58]	chr11	492370	8	INTRON	INTRON	C11orf24	ENSG00000171067.11	ENST00000304271.11:ENST00000533310.5:ENST00000530166.5:ENST00000527280.1:ENST00000529590.5:ENST00000532534.5:ENST00000532969.1:ENST00000529339.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	529	2	5.71489	7.22439	8.73389	4.58823e-5	1.38024e-5	0.00373545	6.44623e-4
chr2	72335520	72335619	1183279	0	-	0.464646	(0.45,0.485]	chr2	128659	1	INTRON	INTRON	EXOC6B	ENSG00000144036.16	ENST00000272427.11:ENST00000490919.5:ENST00000634650.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	234	2	7.15431	7.224265	7.29422	0.00110556	4.04936e-5	0.0200331	0.00140723
chr8	133268915	133269015	4084008	0	-	0.48	(0.45,0.485]	chr8	388324	14	INTRON	INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000517745.2:ENST00000676005.1:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674536.1:ENST00000675357.1:ENST00000675600.1:ENST00000674902.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	355	2	5.89443	7.223155	8.55188	0.00141013	8.80768e-5	0.0180659	0.00521027
chr6	82220913	82221013	3192194	0	-	0.39	(0.36,0.39]	chr6	309512	2	SS3_PROX	SS3_PROX:INTRON	IBTK	ENSG00000005700.15	ENST00000505222.5:ENST00000306270.12:ENST00000610980.4:ENST00000503400.5:ENST00000503631.5:ENST00000510291.5:ENST00000369751.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	241	2	6.8178	7.22225	7.6267	0.00347933	1.55927e-5	0.0378956	7.04149e-4
chr10	18565062	18565162	4642379	0	-	0.39	(0.36,0.39]	chr10	443321	127	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	236	2	7.18455	7.22218	7.25981	0.00155805	5.73017e-5	0.0243306	0.00181133
chr2	89554900	89555000	1216641	0	-	0.42	(0.419,0.45]	chr2	131064	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000283196	ENSG00000283196.2	ENST00000636531.1:ENST00000635968.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	260	2	6.67269	7.22195	7.77121	7.59955e-4	2.80959e-4	0.0162896	0.00578259
chr16	89306441	89306541	6659876	0	-	0.72	(0.58,1]	chr16	666665	7	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1:ENST00000647539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	222	2	7.10823	7.221595	7.33496	5.16402e-4	5.99783e-6	0.0132022	3.5765e-4
chr11	70776858	70776958	5062050	0	-	0.51	(0.485,0.523]	chr11	492701	590	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	235	2	7.02291	7.221205	7.4195	7.03986e-4	4.77916e-5	0.0156243	0.00159602
chr17	17567988	17568087	6865353	0	-	0.515152	(0.485,0.523]	chr17	695822	23	INTRON	INTRON	PEMT	ENSG00000133027.18	ENST00000255389.10:ENST00000435340.6:ENST00000395783.5:ENST00000395782.5:ENST00000395781.6:ENST00000580147.5:ENST00000421096.5:ENST00000472446.1:ENST00000461404.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	235	2	7.02291	7.221205	7.4195	7.03986e-4	4.77916e-5	0.0156243	0.00159602
chr2	665350	665449	1079798	0	-	0.474747	(0.45,0.485]	chr2	117536	16	UTR3	UTR3:EXON_MRNA	TMEM18	ENSG00000151353.15	ENST00000281017.8	protein_coding	protein_coding	protein_coding	protein_coding	0	232	2	7.13094	7.22087	7.3108	0.00151409	2.51511e-5	0.0240218	9.92488e-4
chr12	112226142	112226219	5503300	0	-	0.376623	(0.36,0.39]	chr12	541895	1	SS5_PROX	SS5_PROX:INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550968.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	235	2	7.09386	7.2206600000000005	7.34746	0.00211424	3.56522e-5	0.028892	0.00128023
chr7	137954879	137954979	3720251	0	-	0.47	(0.45,0.485]	chr7	357307	211	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5	protein_coding	protein_coding	protein_coding	protein_coding	0	254	2	6.50739	7.220415	7.93344	0.00482293	3.58138e-6	0.0453395	2.51034e-4
chr14	103684679	103684776	5924680	0	+	0.474227	(0.45,0.485]	chr14	579654	3	SS3_PROX	SS3_PROX:INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000380038.7:ENST00000334553.11:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8:ENST00000537046.6:ENST00000553325.5:ENST00000555856.1:ENST00000535194.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	232	2	7.1795	7.220000000000001	7.2605	0.00137948	2.93313e-5	0.0226729	0.00110673
chr16	32771993	32772091	6442267	0	+	0.561224	(0.523,0.58]	chr16	638922	5	INTRON	INTRON	HERC2P5	ENSG00000260644.6	ENST00000562687.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	0	230	2	7.05018	7.219255	7.38833	0.00148008	1.43066e-5	0.023604	6.59187e-4
chr2	168665936	168666036	946279	0	+	0.34	(0.33,0.36]	chr2	103981	345	INTRON	INTRON	CERS6	ENSG00000172292.15	ENST00000392687.4:ENST00000305747.11	protein_coding	protein_coding	protein_coding	protein_coding	0	233	2	7.11631	7.21924	7.32217	0.00163405	3.12144e-5	0.0250684	0.00115981
chr14	104871755	104871855	5925929	0	+	0.67	(0.58,1]	chr14	579942	28	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	245	2	6.46212	7.218859999999999	7.9756	0.00211728	6.10012e-7	0.028892	7.54968e-5
chr18	74915421	74915520	7092436	0	+	0.494949	(0.485,0.523]	chr18	722466	96	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	238	2	6.92851	7.218385	7.50826	5.88357e-4	6.37267e-5	0.0142143	0.00195661
chr21	43958933	43959033	7625373	0	+	0.52	(0.485,0.523]	chr21	796924	33	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000448845.1:ENST00000422850.5:ENST00000546158.1	protein_coding	protein_coding	protein_coding	protein_coding	0	230	2	7.18832	7.218195	7.24807	0.00111738	2.38146e-5	0.0202011	9.55691e-4
chr3	12967086	12967186	1688800	0	-	0.64	(0.58,1]	chr3	176521	3	SS5_PROX	SS5_PROX:INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	235	2	6.8169	7.21763	7.61836	1.59836e-4	3.50609e-5	0.00707846	0.00126332
chr14	104891029	104891125	5926136	0	+	0.5625	(0.523,0.58]	chr14	579999	9	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	1	499	2	6.06619	7.21719	8.36819	9.99377e-5	4.37059e-6	0.00559397	2.86169e-4
chr9	135836664	135836764	4431113	0	-	0.5	(0.485,0.523]	chr9	423507	87	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	230	2	7.03741	7.21696	7.39651	0.0015038	1.49363e-5	0.0239138	6.82859e-4
chr19	16853946	16854042	7217911	0	+	0.46875	(0.45,0.485]	chr19	737639	4	SS3_PROX	SS3_PROX:INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000596802.5:ENST00000596638.1	protein_coding	protein_coding	protein_coding	protein_coding	0	243	2	6.66919	7.21622	7.76325	0.0035963	6.14862e-6	0.0384878	3.6476e-4
chr13	41879309	41879408	5699274	0	-	0.494949	(0.485,0.523]	chr13	559222	105	INTRON	INTRON	VWA8	ENSG00000102763.18	ENST00000379310.8:ENST00000281496.6	protein_coding	protein_coding	protein_coding	protein_coding	0	235	2	6.99213	7.2159200000000006	7.43971	6.75881e-4	5.25088e-5	0.0153083	0.00170211
chr1	43560818	43560918	107047	0	+	0.61	(0.58,1]	chr1	13192	65	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	223	2	7.1289	7.215859999999999	7.30282	3.31884e-4	1.22303e-5	0.0103819	5.9245e-4
chr1	89915015	89915115	181641	0	+	0.43	(0.419,0.45]	chr1	19585	680	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	0	239	2	6.8826599999999996	7.215109999999999	7.54756	0.00374639	2.38821e-5	0.0393941	9.56571e-4
chr14	105215675	105215772	6058154	0	-	0.494845	(0.485,0.523]	chr14	594783	24	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000392557.8:ENST00000446501.6:ENST00000635152.1:ENST00000547374.5:ENST00000551787.5:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	231	2	7.12577	7.2143999999999995	7.30303	8.89361e-4	3.48268e-5	0.0177608	0.00126017
chr5	177065794	177065893	2597598	0	+	0.474747	(0.45,0.485]	chr5	257875	13	UTR3	UTR3:EXON_MRNA:INTRON	ZNF346	ENSG00000113761.12	ENST00000512315.5:ENST00000358149.8:ENST00000511834.5:ENST00000503039.1	protein_coding	protein_coding	protein_coding	protein_coding	0	232	2	7.16802	7.214385	7.26075	0.00117955	3.88487e-5	0.020761	0.00136211
chr8	130276641	130276741	4081960	0	-	0.5	(0.485,0.523]	chr8	388157	297	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000521075.5:ENST00000524367.5:ENST00000520927.5:ENST00000524299.1:ENST00000521426.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	233	2	6.85388	7.213595	7.57331	0.00214661	8.51093e-6	0.0291055	4.57175e-4
chr6	31735361	31735461	3119439	0	-	0.62	(0.58,1]	chr6	303332	7	INTRON	INTRON	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000616760.1:ENST00000375784.8	protein_coding	protein_coding	protein_coding	protein_coding	0	227	2	6.97312	7.213514999999999	7.45391	2.34376e-4	2.07776e-5	0.00863036	8.62032e-4
chr16	1727549	1727648	6371211	0	+	0.525253	(0.523,0.58]	chr16	628837	25	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000685565.1:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	229	2	7.18788	7.21324	7.2386	0.00112897	2.29668e-5	0.0202727	9.29664e-4
chr5	10708471	10708571	2612121	0	-	0.47	(0.45,0.485]	chr5	260254	245	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	232	2	7.15431	7.21315	7.27199	0.00115418	4.04936e-5	0.0205679	0.00140723
chr2	11580503	11580603	720678	0	+	0.49	(0.485,0.523]	chr2	84133	4	SS3_PROX	SS3_PROX:INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000263834.9:ENST00000389825.7:ENST00000381483.6:ENST00000234142.9	protein_coding	protein_coding	protein_coding	protein_coding	1	500	2	6.34761	7.212680000000001	8.07775	1.81848e-4	1.82529e-6	0.00759001	1.56244e-4
chr1	30933542	30933642	434609	0	-	0.64	(0.58,1]	chr1	51445	2	SS3_PROX	SS3_PROX:INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000530669.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	223	2	7.09906	7.21223	7.3254	3.15151e-4	1.35452e-5	0.0100952	6.38288e-4
chr2	55022891	55022990	1148256	0	-	0.484848	(0.45,0.485]	chr2	125466	85	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	1	623	2	5.98035	7.2112799999999995	8.44221	2.14248e-4	6.92271e-7	0.0082811	8.22818e-5
chr3	141385647	141385738	1587790	0	+	0.43956	(0.419,0.45]	chr3	167716	4	INTRON	INTRON	ZBTB38	ENSG00000177311.12	ENST00000509842.5:ENST00000513619.5:ENST00000512276.5:ENST00000637706.1:ENST00000507657.1:ENST00000321464.7:ENST00000507722.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	235	2	7.18173	7.211015	7.2403	0.00221619	5.79892e-5	0.0295806	0.00182637
chr17	72554531	72554631	6963856	0	-	0.59	(0.58,1]	chr17	710389	201	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	479	2	6.68049	7.2107399999999995	7.74099	1.19833e-4	1.90546e-7	0.00607292	3.5439e-5
chr4	143338659	143338759	2136958	0	+	0.45	(0.419,0.45]	chr4	217046	10	INTRON	INTRON	GAB1	ENSG00000109458.9	ENST00000262995.8:ENST00000262994.9:ENST00000514639.5	protein_coding	protein_coding	protein_coding	protein_coding	0	236	2	7.14867	7.210710000000001	7.27275	0.00188399	7.52409e-5	0.0271069	0.00222212
chr8	47493031	47493131	3814556	0	+	0.43	(0.419,0.45]	chr8	367313	521	INTRON	INTRON	SPIDR	ENSG00000164808.17	ENST00000541342.2:ENST00000518074.5:ENST00000297423.9:ENST00000521550.5:ENST00000524126.5:ENST00000524141.5:ENST00000519661.5:ENST00000522117.5:ENST00000524033.5:ENST00000524006.5:ENST00000521214.5:ENST00000519401.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	237	2	6.92537	7.210375	7.49538	0.00347877	2.78044e-5	0.0378956	0.00106588
chr11	497086	497182	4968417	0	-	0.583333	(0.58,1]	chr11	480490	17	INTRON	INTRON	RNH1	ENSG00000023191.17	ENST00000534797.5:ENST00000397614.5:ENST00000397604.7:ENST00000354420.7:ENST00000397615.6:ENST00000525522.5:ENST00000525701.5:ENST00000529768.5:ENST00000533410.5:ENST00000438658.6:ENST00000356187.9:ENST00000524464.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	474	2	6.62814	7.209325	7.79051	1.06611e-4	2.31598e-7	0.00577026	4.01404e-5
chr19	17483381	17483481	7220766	0	+	0.6	(0.58,1]	chr19	738260	1	SS3_PROX	SS3_PROX:INTRON	SLC27A1	ENSG00000130304.17	ENST00000600277.5:ENST00000598424.5:ENST00000252595.12:ENST00000599380.5:ENST00000600297.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	240	2	6.70249	7.20903	7.71557	1.27227e-4	5.11463e-5	0.00624469	0.00167326
chrX	47219505	47219605	7877798	0	+	0.57	(0.523,0.58]	chrX	825682	4	SS5_PROX	SS5_PROX:INTRON	CDK16	ENSG00000102225.17	ENST00000517997.5:ENST00000517479.1:ENST00000457458.6:ENST00000522883.1:ENST00000520295.5:ENST00000357227.9:ENST00000519758.5:ENST00000520893.5:ENST00000517426.5:ENST00000522234.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	229	2	7.17132	7.20885	7.24638	0.00100536	2.83567e-5	0.0190855	0.00107991
chr11	70585929	70586029	5060132	0	-	0.47	(0.45,0.485]	chr11	492663	826	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	239	2	6.89879	7.208615	7.51844	7.1335e-4	8.68871e-5	0.0157644	0.00246367
chrX	2224727	2224827	7966085	0	-	0.41	(0.39,0.419]	chrX	834328	31	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11	protein_coding	protein_coding	protein_coding	protein_coding	0	239	2	6.96985	7.208475	7.4471	0.00113594	1.07091e-4	0.0203584	0.00288045
chr2	74032305	74032405	834322	0	+	0.58	(0.523,0.58]	chr2	94249	288	INTRON	INTRON	TET3	ENSG00000187605.16	ENST00000409262.8:ENST00000305799.8	protein_coding	protein_coding	protein_coding	protein_coding	0	228	2	7.07621	7.20817	7.34013	0.00140655	1.66718e-5	0.0229261	7.38685e-4
chrX	2225227	2225327	7966090	0	-	0.46	(0.45,0.485]	chrX	834328	36	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11	protein_coding	protein_coding	protein_coding	protein_coding	0	230	2	7.1795	7.20709	7.23468	0.00137948	3.17326e-5	0.0226729	0.00117335
chr18	35606775	35606875	7046889	0	+	0.45	(0.419,0.45]	chr18	719466	146	INTRON	INTRON	GALNT1	ENSG00000141429.14	ENST00000586725.1:ENST00000269195.6:ENST00000591924.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	235	2	7.16212	7.206325	7.25053	0.00196039	7.24277e-5	0.0277361	0.00215979
chr11	120328903	120328998	4951109	0	+	0.389474	(0.36,0.39]	chr11	478339	9	INTRON	INTRON	TLCD5	ENSG00000181264.9	ENST00000531346.1:ENST00000314475.6:ENST00000375095.3:ENST00000529187.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	233	2	7.01644	7.2052700000000005	7.3941	0.0024343	3.10886e-5	0.0311222	0.00115616
chr12	122094762	122094862	5343536	0	+	0.52	(0.485,0.523]	chr12	521864	151	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	238	2	6.86196	7.203995	7.54603	5.44941e-4	7.79323e-5	0.0136434	0.00227427
chr7	73598393	73598483	3602840	0	-	0.422222	(0.419,0.45]	chr7	347628	3	INTRON	INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	236	2	6.91127	7.2033249999999995	7.49538	0.00356503	2.78044e-5	0.0383188	0.00106588
chr17	80224536	80224636	6806864	0	+	0.45	(0.419,0.45]	chr17	687275	8	INTRON	INTRON	SLC26A11	ENSG00000181045.15	ENST00000361193.8:ENST00000546047.6:ENST00000411502.7:ENST00000571888.5:ENST00000576126.5:ENST00000572725.5:ENST00000571564.5:ENST00000571176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	235	2	6.95316	7.202695	7.45223	0.00331448	3.15167e-5	0.0368376	0.00116717
chr10	72742965	72743065	4506764	0	+	0.49	(0.485,0.523]	chr10	431204	60	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5:ENST00000604152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	228	2	7.18141	7.202555	7.2237	0.00104165	2.93111e-5	0.0193905	0.00110673
chr2	186164241	186164341	1338946	0	-	0.51	(0.485,0.523]	chr2	142313	11	INTRON	INTRON	LINC01473	ENSG00000237877.7	ENST00000658984.1:ENST00000658990.1:ENST00000655126.1:ENST00000667839.1:ENST00000670612.1:ENST00000668985.1:ENST00000661574.1:ENST00000666677.1:ENST00000665629.1:ENST00000671116.1:ENST00000419719.2:ENST00000667056.1:ENST00000671599.1	lncRNA	lncRNA	lncRNA	lncRNA	0	234	2	6.94468	7.202154999999999	7.45963	6.49227e-4	6.06735e-5	0.0149631	0.00188492
chr8	9676669	9676768	3753908	0	+	0.383838	(0.36,0.39]	chr8	360728	51	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000520408.5:ENST00000518281.5:ENST00000518027.5:ENST00000521039.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	233	2	7.14419	7.202	7.25981	0.00155805	6.43862e-5	0.0243306	0.00197217
chr14	103103551	103103648	5921848	0	+	0.597938	(0.58,1]	chr14	579208	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000559116.1:ENST00000560925.5:ENST00000560102.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	220	2	7.15814	7.201460000000001	7.24478	3.78937e-4	1.10629e-5	0.011147	5.52474e-4
chr16	29269814	29269913	6433535	0	+	0.50505	(0.485,0.523]	chr16	636745	177	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	242	2	6.77421	7.200875	7.62754	4.61541e-4	1.01398e-4	0.0123746	0.00276585
chr19	48153671	48153771	7394081	0	-	0.55	(0.523,0.58]	chr19	768551	4	SS5_PROX	SS5_PROX:INTRON	LIG1	ENSG00000105486.14	ENST00000263274.12:ENST00000536218.5:ENST00000427526.6:ENST00000594759.5:ENST00000594067.5:ENST00000601091.5:ENST00000613670.4:ENST00000542460.5:ENST00000595758.5:ENST00000596104.5:ENST00000599165.5:ENST00000596549.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	227	2	7.03698	7.200704999999999	7.36443	0.00151874	1.54352e-5	0.0240441	6.98728e-4
chr12	50643345	50643445	5230843	0	+	0.42	(0.419,0.45]	chr12	507719	21	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5:ENST00000546719.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	238	2	6.99178	7.200595	7.40941	0.00147325	1.16955e-4	0.0235837	0.00308693
chr22	32820394	32820494	7717813	0	+	0.58	(0.523,0.58]	chr22	807776	179	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	0	255	2	6.58447	7.200555	7.81664	3.16525e-4	1.68436e-4	0.0101066	0.00400681
chr7	79418869	79418969	3626188	0	-	0.24	[0,0.29]	chr7	349238	28	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000628997.1:ENST00000636234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	226	2	7.02751	7.20054	7.37357	3.27779e-4	3.37027e-5	0.010311	0.0012296
chr6	170399366	170399466	3076573	0	+	0.4	(0.39,0.419]	chr6	299192	34	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	4	2345	2	7.14066	7.20039	7.26012	2.8468e-5	2.05655e-8	0.00300339	8.35275e-6
chr20	8494038	8494138	7430208	0	+	0.49	(0.485,0.523]	chr20	773698	1220	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	497	2	5.98982	7.199995	8.41017	9.02506e-5	5.94779e-6	0.00526893	3.57135e-4
chr20	18597139	18597239	7443398	0	+	0.43	(0.419,0.45]	chr20	774739	5	INTRON	INTRON	ENSG00000284776:DTD1	ENSG00000284776.1:ENSG00000125821.13	ENST00000618693.4:ENST00000647441.1:ENST00000494921.2:ENST00000377452.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	233	2	7.12179	7.19982	7.27785	0.0024648	5.20883e-5	0.0313232	0.00169273
chr13	50573598	50573698	5598361	0	+	0.4	(0.39,0.419]	chr13	551685	399	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1:ENST00000484869.6	lncRNA	lncRNA	lncRNA	lncRNA	0	233	2	7.12991	7.19975	7.26959	0.00157911	6.78033e-5	0.0245893	0.00205103
chr18	13590038	13590138	7026493	0	+	0.55	(0.523,0.58]	chr18	717646	42	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000677744.1:ENST00000593236.1:ENST00000678400.1:ENST00000586207.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	246	2	6.70356	7.199725000000001	7.69589	4.0569e-4	1.18392e-4	0.0115298	0.00311099
chr15	99601740	99601840	6198698	0	+	0.37	(0.36,0.39]	chr15	609959	4	SS3_PROX	SS3_PROX:INTRON	MEF2A	ENSG00000068305.18	ENST00000560493.5:ENST00000354410.9:ENST00000558812.5:ENST00000558856.5:ENST00000685785.1:ENST00000559036.5:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000558049.5:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1:ENST00000559903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	237	2	6.97042	7.199555	7.42869	0.00113746	1.0585e-4	0.0203659	0.00286061
chr4	888055	888154	2178483	0	-	0.535354	(0.523,0.58]	chr4	220626	24	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	227	2	7.01022	7.199275	7.38833	0.0016001	1.43066e-5	0.0246878	6.59187e-4
chr16	87738327	87738427	6656464	0	-	0.51	(0.485,0.523]	chr16	665892	73	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	227	2	7.02409	7.19845	7.37281	0.00154346	1.60973e-5	0.02427	7.19583e-4
chr17	63765147	63765247	6944762	0	-	0.36	(0.33,0.36]	chr17	708300	3	SS3_PROX	SS3_PROX:INTRON	CCDC47	ENSG00000108588.15	ENST00000225726.10:ENST00000403162.7:ENST00000582252.1	protein_coding	protein_coding	protein_coding	protein_coding	0	240	2	6.85241	7.198335	7.54426	7.16077e-4	1.23574e-4	0.0158129	0.00321265
chr1	100191784	100191883	551267	0	-	0.585859	(0.58,1]	chr1	63273	50	UTR3	UTR3:EXON_MRNA	DBT	ENSG00000137992.15	ENST00000370132.8	protein_coding	protein_coding	protein_coding	protein_coding	0	229	2	6.85311	7.198205	7.5433	1.90447e-4	3.10807e-5	0.00778805	0.00115612
chr6	34673855	34673955	3125048	0	-	0.45	(0.419,0.45]	chr6	304727	20	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	0	237	2	7.00677	7.197990000000001	7.38921	0.00152802	1.1216e-4	0.0240842	0.00298349
chr16	85523079	85523179	6518302	0	+	0.55	(0.523,0.58]	chr16	646391	1638	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	256	2	6.56363	7.197815	7.832	3.0665e-4	1.79062e-4	0.00996904	0.00418549
chr3	128495012	128495111	1563246	0	+	0.444444	(0.419,0.45]	chr3	165331	46	INTRON	INTRON	GATA2-AS1	ENSG00000244300.3	ENST00000464242.1:ENST00000468377.1:ENST00000669945.1	lncRNA	lncRNA	lncRNA	lncRNA	0	258	2	6.44748	7.19763	7.94778	0.00782663	7.31579e-6	0.0592048	4.11658e-4
chr9	136207329	136207429	4433089	0	-	0.45	(0.419,0.45]	chr9	423667	11	UTR3	UTR3:EXON_MRNA	QSOX2	ENSG00000165661.17	ENST00000358701.10	protein_coding	protein_coding	protein_coding	protein_coding	4	2321	2	6.8747	7.197425	7.52015	1.72141e-5	9.01114e-8	0.00238362	2.20297e-5
chr7	75712868	75712968	3608232	0	-	0.32	(0.29,0.33]	chr7	348444	578	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6:ENST00000485723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	231	2	6.9867	7.196325	7.40595	6.158e-4	5.85045e-5	0.0145945	0.00183587
chr16	85510385	85510485	6518175	0	+	0.66	(0.58,1]	chr16	646391	1511	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	273	2	6.29206	7.19425	8.09644	1.89825e-4	5.14219e-5	0.0043642	0.00397585
chr1	12583950	12584049	402442	0	-	0.515152	(0.485,0.523]	chr1	46222	29	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	226	2	7.07664	7.194215	7.31179	0.00139256	1.95061e-5	0.022808	8.25524e-4
chr11	47806731	47806812	5037738	0	-	0.358025	(0.33,0.36]	chr11	487899	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5	protein_coding	protein_coding	protein_coding	protein_coding	0	229	2	7.141	7.194179999999999	7.24736	0.00155921	3.90095e-5	0.0243306	0.0013666
chr19	1170935	1171035	7305762	0	-	0.46	(0.45,0.485]	chr19	753058	19	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	228	2	7.1795	7.19394	7.20838	0.00137948	3.43738e-5	0.0226729	0.00124793
chr10	75846079	75846179	4524628	0	+	0.35	(0.33,0.36]	chr10	432282	627	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	229	2	7.06561	7.19389	7.32217	0.00179858	3.12144e-5	0.0263284	0.00115981
chr1	8509369	8509466	392634	0	-	0.463918	(0.45,0.485]	chr1	45009	3	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000656437.1:ENST00000464972.5:ENST00000659924.1:ENST00000480342.5:ENST00000507012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	229	2	7.12649	7.19362	7.26075	0.00117955	4.40415e-5	0.020761	0.00149941
chr20	8463145	8463245	7429899	0	+	0.37	(0.36,0.39]	chr20	773698	911	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	657	2	6.14143	7.19304	8.24465	2.0369e-4	2.37778e-6	0.0080616	1.87483e-4
chr2	121630374	121630474	1264042	0	-	0.42	(0.419,0.45]	chr2	136149	238	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6	protein_coding	protein_coding	protein_coding	protein_coding	0	236	2	7.00677	7.192885	7.379	0.00155644	1.1216e-4	0.0243306	0.00298349
chr6	158572719	158572819	3064022	0	+	0.58	(0.523,0.58]	chr6	297687	121	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	0	233	2	6.91578	7.1924150000000004	7.46905	6.43551e-4	6.24234e-5	0.0148938	0.00192539
chr9	134339434	134339534	4260817	0	+	0.56	(0.523,0.58]	chr9	406311	124	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	1308	2	7.12654	7.19198	7.25742	1.5154e-5	7.72655e-8	0.00223783	2.01497e-5
chr10	18569559	18569659	4642424	0	-	0.41	(0.39,0.419]	chr10	443321	172	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	231	2	7.17065	7.191795	7.21294	0.00175257	6.02936e-5	0.0259791	0.00187763
chr6	128053065	128053165	3252474	0	-	0.44	(0.419,0.45]	chr6	315116	434	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000415046.6:ENST00000524481.5:ENST00000531050.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	232	2	7.18865	7.19104	7.19343	0.00217056	6.71746e-5	0.029243	0.00203494
chr11	112254778	112254878	4942412	0	+	0.52	(0.485,0.523]	chr11	476600	169	INTRON	INTRON	PTS	ENSG00000150787.8	ENST00000531673.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	236	2	6.84483	7.190754999999999	7.53668	5.55391e-4	8.20567e-5	0.0137234	0.00236018
chr9	135838361	135838460	4431130	0	-	0.50505	(0.485,0.523]	chr9	423507	104	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	230	2	6.80799	7.19065	7.57331	0.0023441	8.51093e-6	0.0305023	4.57175e-4
chr12	53586776	53586876	5431436	0	-	0.46	(0.45,0.485]	chr12	533278	338	INTRON	INTRON	ATF7	ENSG00000170653.19	ENST00000548446.6:ENST00000420353.7:ENST00000456903.8:ENST00000588232.5:ENST00000551480.2:ENST00000588078.5:ENST00000591397.1:ENST00000548118.6	protein_coding	protein_coding	protein_coding	protein_coding	0	229	2	7.09813	7.19064	7.28315	0.00112952	4.79692e-5	0.0202727	0.00159846
chr2	138567356	138567454	904553	0	+	0.510204	(0.485,0.523]	chr2	101982	20	INTRON	INTRON	SPOPL	ENSG00000144228.9	ENST00000280098.9:ENST00000420679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	599	2	5.94196	7.190295	8.43863	1.92105e-4	4.97578e-7	0.00780216	6.61125e-5
chr7	112174205	112174305	3692250	0	-	0.43	(0.419,0.45]	chr7	354969	1697	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	235	2	6.85347	7.190194999999999	7.52692	0.00394037	2.53648e-5	0.0406053	9.97976e-4
chr1	246234023	246234123	703125	0	-	0.45	(0.419,0.45]	chr1	82422	404	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	238	2	6.76217	7.189875000000001	7.61758	0.00460997	1.94575e-5	0.0442426	8.25524e-4
chr2	3294702	3294802	1081054	0	-	0.54	(0.523,0.58]	chr2	117633	120	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	225	2	7.07621	7.18955	7.30289	0.00140655	1.87561e-5	0.0229261	8.04567e-4
chr3	197820830	197820930	1668990	0	+	0.39	(0.36,0.39]	chr3	175039	4	SS5_PROX	SS5_PROX:INTRON	LRCH3	ENSG00000186001.14	ENST00000443727.1:ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8:ENST00000493726.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	231	2	7.13048	7.189525	7.24857	0.00159081	6.69803e-5	0.024604	0.00203052
chr18	13589938	13590038	7026492	0	+	0.59	(0.58,1]	chr18	717646	41	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000677744.1:ENST00000593236.1:ENST00000678400.1:ENST00000586207.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	246	2	6.55642	7.189515	7.82261	9.88138e-5	8.22236e-5	0.00555761	0.00236215
chr6	2834412	2834512	3085363	0	-	0.47	(0.45,0.485]	chr6	299536	4	SS3_PROX	SS3_PROX:INTRON	SERPINB1	ENSG00000021355.13	ENST00000380739.6:ENST00000468511.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	235	2	6.89879	7.1894849999999995	7.48018	7.69095e-4	8.68871e-5	0.0164342	0.00246367
chr18	80186336	80186436	7183143	0	-	0.56	(0.523,0.58]	chr18	730364	28	INTRON	INTRON	PARD6G	ENSG00000178184.16	ENST00000353265.8:ENST00000470488.2:ENST00000463384.1	protein_coding	protein_coding	protein_coding	protein_coding	0	226	2	7.1435	7.189185	7.23487	0.00102861	3.0928e-5	0.0192522	0.00115425
chr13	113059094	113059194	5656228	0	+	0.52	(0.485,0.523]	chr13	555189	43	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	240	2	6.756	7.187355	7.61871	4.69943e-4	1.07056e-4	0.012528	0.00288045
chr19	56595928	56596027	7295038	0	+	0.484848	(0.45,0.485]	chr19	751227	1	INTRON	INTRON	ZNF71	ENSG00000197951.10	ENST00000328070.10:ENST00000599599.7:ENST00000594944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	227	2	7.00185	7.18658	7.37131	0.00193567	2.08874e-5	0.0275437	8.65092e-4
chr16	85230865	85230965	6515377	0	+	0.49	(0.485,0.523]	chr16	646377	31	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	235	2	6.84483	7.18605	7.52727	5.66104e-4	8.20567e-5	0.0138751	0.00236018
chr2	87548807	87548907	848138	0	+	0.51	(0.485,0.523]	chr2	95749	274	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000642451.1:ENST00000644478.1:ENST00000409139.6:ENST00000644125.1:ENST00000643743.1:ENST00000643276.1:ENST00000409898.2:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000646636.1:ENST00000629257.1:ENST00000409054.2	lncRNA	lncRNA	lncRNA	lncRNA	0	227	2	6.88368	7.18565	7.48762	0.00202693	1.11881e-5	0.0283135	5.5674e-4
chr11	64306668	64306757	4868820	0	+	0.629214	(0.58,1]	chr11	467348	6	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ESRRA	ENSG00000173153.17	ENST00000406310.6:ENST00000000442.11:ENST00000677967.1:ENST00000539594.5:ENST00000405666.5:ENST00000468670.2	protein_coding	protein_coding	protein_coding	protein_coding	0	217	2	6.98601	7.185645	7.38528	6.79156e-4	5.03066e-6	0.0153241	3.16553e-4
chr10	79146869	79146969	4532825	0	+	0.53	(0.523,0.58]	chr10	432432	67	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	248	2	6.62527	7.18534	7.74541	3.66506e-4	1.49357e-4	0.0109836	0.00367368
chrX	129496971	129497064	8099946	0	-	0.462366	(0.45,0.485]	chrX	844661	1	SS3_PROX	SS3_PROX:INTRON	SMARCA1	ENSG00000102038.16	ENST00000617310.4:ENST00000371122.8:ENST00000371121.5:ENST00000371123.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	232	2	6.9473	7.1840600000000006	7.42082	8.64002e-4	7.52721e-5	0.0175214	0.00222212
chr7	561064	561164	3523695	0	-	0.54	(0.523,0.58]	chr7	340370	92	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000400758.6	protein_coding	protein_coding	protein_coding	protein_coding	0	225	2	6.95516	7.183505	7.41185	0.00178078	1.32752e-5	0.0262315	6.28604e-4
chr1	1030523	1030622	1020	0	+	0.555556	(0.523,0.58]	chr1	166	77	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	224	2	7.07621	7.183235	7.29026	0.00140655	1.95191e-5	0.0229261	8.25524e-4
chr17	43544915	43545015	6739014	0	+	0.53	(0.523,0.58]	chr17	678632	1	SS5_PROX	SS5_PROX:INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	224	2	7.10179	7.183225	7.26466	0.00133774	2.11593e-5	0.0223452	8.73984e-4
chr1	1341466	1341566	381191	0	-	0.51	(0.485,0.523]	chr1	43163	4	SS5_PROX	SS5_PROX:INTRON	DVL1	ENSG00000107404.21	ENST00000378891.9:ENST00000378888.10	protein_coding	protein_coding	protein_coding	protein_coding	1	490	2	6.32668	7.182615	8.03855	1.9738e-4	1.95696e-6	0.00792255	1.64003e-4
chr4	98917121	98917220	2288112	0	-	0.40404	(0.39,0.419]	chr4	230116	68	INTRON	INTRON	EIF4E	ENSG00000151247.13	ENST00000450253.7:ENST00000280892.10:ENST00000515638.5:ENST00000504432.5:ENST00000511644.5:ENST00000505992.1:ENST00000507665.5:ENST00000504472.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	229	2	7.04134	7.1821649999999995	7.32299	0.00239617	3.87332e-5	0.0309227	0.00135919
chr2	105765770	105765870	868776	0	+	0.46	(0.45,0.485]	chr2	98078	195	INTRON	INTRON	NCK2	ENSG00000071051.14	ENST00000233154.9:ENST00000451463.6:ENST00000393348.6	protein_coding	protein_coding	protein_coding	protein_coding	0	231	2	6.96311	7.18179	7.40047	8.99052e-4	7.18212e-5	0.0178386	0.00214399
chr16	20675122	20675222	6416208	0	+	0.52	(0.485,0.523]	chr16	634381	3	SS5_PROX	SS5_PROX:INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000614721.1:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	494	2	6.4136	7.181685	7.94977	2.37499e-4	1.46478e-6	0.0086821	1.34945e-4
chr7	158915895	158915992	3523148	0	+	0.43299	(0.419,0.45]	chr7	340293	12	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	233	2	7.03629	7.1815750000000005	7.32686	0.00170971	1.03265e-4	0.025659	0.00280222
chr5	119278302	119278402	2516688	0	+	0.5	(0.485,0.523]	chr5	249986	90	INTRON	INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5	protein_coding	protein_coding	protein_coding	protein_coding	0	242	2	6.69995	7.181145000000001	7.66234	4.29834e-4	1.26446e-4	0.011904	0.00325863
chr14	54606098	54606198	5819834	0	+	0.43	(0.419,0.45]	chr14	569049	376	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	257	2	6.5755	7.181115	7.78673	7.38434e-4	3.64701e-4	0.0160522	0.00699922
chr2	226741748	226741848	1379293	0	-	0.43	(0.419,0.45]	chr2	147292	51	INTRON	INTRON	IRS1	ENSG00000169047.6	ENST00000305123.6	protein_coding	protein_coding	protein_coding	protein_coding	0	264	2	6.49275	7.181005	7.86926	6.33602e-4	4.54324e-4	0.0147865	0.00818426
chr16	12261442	12261542	6392483	0	+	0.68	(0.58,1]	chr16	631965	614	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	230	2	6.56056	7.180904999999999	7.80125	0.00171861	1.14692e-6	0.025659	1.13842e-4
chr17	67356019	67356117	6958950	0	-	0.438776	(0.419,0.45]	chr17	709765	2	INTRON	INTRON	PSMD12	ENSG00000197170.10	ENST00000356126.8:ENST00000357146.4:ENST00000584008.5:ENST00000584289.5:ENST00000581618.1:ENST00000579365.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	230	2	7.05924	7.1808	7.30236	0.00275242	4.85572e-5	0.0332418	0.00161039
chr17	45024224	45024324	6741157	0	+	0.56	(0.523,0.58]	chr17	678872	658	INTRON	INTRON	NMT1	ENSG00000136448.13	ENST00000678938.1	protein_coding	protein_coding	protein_coding	protein_coding	0	230	2	6.93213	7.18067	7.42921	6.97397e-4	5.9384e-5	0.0155984	0.00185705
chr5	66065586	66065686	2438773	0	+	0.48	(0.45,0.485]	chr5	242864	101	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1:ENST00000511671.5:ENST00000503913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	226	2	7.1795	7.18055	7.1816	0.00137948	3.72834e-5	0.0226729	0.00131851
chr2	69814786	69814879	825800	0	+	0.526882	(0.523,0.58]	chr2	93043	1	EXON_MRNA	EXON_MRNA:INTRON	ANXA4	ENSG00000196975.16	ENST00000477632.5:ENST00000409920.5:ENST00000635311.1:ENST00000394295.6:ENST00000471395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	224	2	7.17589	7.18046	7.18503	0.00115604	2.7167e-5	0.0205679	0.00104767
chr18	79145552	79145652	7097705	0	+	0.66	(0.58,1]	chr18	722822	13	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000586672.5:ENST00000590271.5:ENST00000490210.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	537	2	5.62441	7.1803799999999995	8.73635	1.66329e-4	3.64599e-8	0.00722822	1.21978e-5
chr19	19074606	19074706	7225615	0	+	0.49	(0.485,0.523]	chr19	739606	101	INTRON	INTRON	SLC25A42	ENSG00000181035.14	ENST00000318596.8:ENST00000597661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	225	2	7.11151	7.1791599999999995	7.24681	9.94865e-4	3.63944e-5	0.0189547	0.00129856
chr11	70279683	70279782	4885780	0	+	0.40404	(0.39,0.419]	chr11	471078	69	INTRON	INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000530746.1:ENST00000532024.1:ENST00000648755.1:ENST00000644155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	230	2	7.08799	7.178789999999999	7.26959	0.00157911	7.64755e-5	0.0245893	0.00224403
chr13	97346303	97346403	5632048	0	+	0.32	(0.29,0.33]	chr13	553195	1	SS3_PROX	SS3_PROX:INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	586	2	5.51701	7.17779	8.83857	4.12863e-4	1.50301e-7	0.0116511	3.00506e-5
chr16	89913429	89913528	6526310	0	+	0.525253	(0.523,0.58]	chr16	647715	3	UTR3	UTR3:UTR5:EXON_MRNA:INTRON	TCF25:ENSG00000267048:MC1R	ENSG00000141002.20:ENSG00000267048.1:ENSG00000258839.4	ENST00000640279.1:ENST00000570217.1:ENST00000539976.1:ENST00000555427.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	0	262	2	6.24442	7.17717	8.10992	0.00670944	1.36459e-6	0.0541591	1.28648e-4
chr17	80691257	80691357	6810368	0	+	0.53	(0.523,0.58]	chr17	687822	471	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	223	2	7.10179	7.176740000000001	7.25169	0.00133774	2.20409e-5	0.0223452	9.00215e-4
chr20	63731719	63731819	7509356	0	+	0.42	(0.419,0.45]	chr20	783515	222	INTRON	INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	1458	2	6.46053	7.176640000000001	7.89275	1.37082e-4	3.4316e-8	0.00649687	1.16971e-5
chr9	14837456	14837556	4280089	0	-	0.36	(0.33,0.36]	chr9	408973	121	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	551	2	5.48228	7.176539999999999	8.8708	4.89453e-5	4.31367e-5	0.00385211	0.00147833
chr7	47474408	47474508	3588552	0	-	0.42	(0.419,0.45]	chr7	346123	213	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	2	694	2	5.63265	7.1764149999999995	8.72018	1.26416e-4	9.00941e-6	0.00622672	4.77618e-4
chr21	43958734	43958833	7625371	0	+	0.454545	(0.45,0.485]	chr21	796924	31	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000448845.1:ENST00000422850.5:ENST00000546158.1	protein_coding	protein_coding	protein_coding	protein_coding	0	225	2	7.13094	7.176265	7.22159	0.00151409	3.30215e-5	0.0240218	0.00120982
chr17	80634062	80634162	6809795	0	+	0.47	(0.45,0.485]	chr17	687816	79	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	498	2	6.33599	7.176195	8.0164	2.63728e-4	2.4061e-6	0.00919874	1.89153e-4
chr5	301680	301780	2377939	0	+	0.61	(0.58,1]	chr5	237467	249	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	221	2	6.93984	7.1760850000000005	7.41233	2.58019e-4	2.32442e-5	0.00908087	9.36605e-4
chr1	112706502	112706577	563036	0	-	0.493333	(0.485,0.523]	chr1	64623	3	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	RHOC	ENSG00000155366.17	ENST00000369633.6:ENST00000369642.7:ENST00000339083.12:ENST00000285735.6:ENST00000468093.5:ENST00000369638.6:ENST00000369637.5:ENST00000369636.6:ENST00000484280.6:ENST00000369632.6:ENST00000425265.6:ENST00000436685.6:ENST00000528831.5:ENST00000484054.3:ENST00000478447.1:ENST00000527563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	232	2	6.86196	7.175485	7.48901	6.11769e-4	7.79323e-5	0.0145086	0.00227427
chr19	1289288	1289387	7186897	0	+	0.585859	(0.58,1]	chr19	731132	26	INTRON	INTRON	EFNA2	ENSG00000099617.4	ENST00000215368.4	protein_coding	protein_coding	protein_coding	protein_coding	0	230	2	6.74164	7.175415	7.60919	1.63302e-4	4.4971e-5	0.00716861	0.00152119
chr17	15534483	15534583	6860787	0	-	0.31	(0.29,0.33]	chr17	695094	35	INTRON	INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	224	2	6.93418	7.174284999999999	7.41439	0.00159876	1.56738e-5	0.0246878	7.07431e-4
chr7	55061641	55061741	3371972	0	+	0.38	(0.36,0.39]	chr7	325289	177	INTRON	INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000463948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	229	2	7.08856	7.174185	7.25981	0.00155805	7.55582e-5	0.0243306	0.00222665
chr2	237753779	237753879	1071121	0	+	0.35	(0.33,0.36]	chr2	116067	3	SS5_PROX	SS5_PROX:INTRON	LRRFIP1	ENSG00000124831.19	ENST00000308482.14:ENST00000498053.5:ENST00000289175.10:ENST00000244815.9:ENST00000392000.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	234	2	6.86914	7.173545	7.47795	8.15069e-4	1.17787e-4	0.016997	0.00310645
chr13	20498293	20498393	5662823	0	-	0.43	(0.419,0.45]	chr13	556208	84	INTRON	INTRON	CRYL1	ENSG00000165475.15	ENST00000643035.1:ENST00000644593.1:ENST00000298248.12:ENST00000644872.1:ENST00000382812.5:ENST00000643750.1:ENST00000644153.1:ENST00000643887.1:ENST00000644167.1:ENST00000646414.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	230	2	7.10755	7.17342	7.23929	0.00200016	8.45142e-5	0.0280981	0.0024172
chr4	1176672	1176771	2179443	0	-	0.373737	(0.36,0.39]	chr4	220858	36	INTRON	INTRON	SPON2	ENSG00000159674.12	ENST00000617421.4:ENST00000515004.5:ENST00000502483.5:ENST00000509233.5:ENST00000511679.5:ENST00000511672.5:ENST00000506266.1:ENST00000504871.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	299	2	5.97395	7.173195	8.37244	0.0145438	1.60027e-6	0.0823572	1.43491e-4
chr6	7211260	7211354	2839120	0	+	0.574468	(0.523,0.58]	chr6	277962	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	241	2	6.68438	7.173145	7.66191	4.34904e-4	1.2535e-4	0.0119405	0.00324328
chrX	23740752	23740850	7995862	0	-	0.469388	(0.45,0.485]	chrX	836471	44	INTRON	INTRON	ACOT9	ENSG00000123130.17	ENST00000379303.10:ENST00000336430.11:ENST00000379295.5:ENST00000494361.5:ENST00000492081.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	225	2	6.97458	7.172945	7.37131	0.00203802	2.08874e-5	0.0283511	8.65092e-4
chr11	61703649	61703749	4862036	0	+	0.51	(0.485,0.523]	chr11	465896	228	INTRON	INTRON	DAGLA	ENSG00000134780.10	ENST00000257215.10:ENST00000540717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	227	2	6.79237	7.172365	7.55236	0.00241519	9.10085e-6	0.0309229	4.79891e-4
chr9	135836565	135836664	4431112	0	-	0.515152	(0.485,0.523]	chr9	423507	86	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	226	2	6.82345	7.1719	7.52035	0.00227572	1.00801e-5	0.0301405	5.15349e-4
chr16	81564876	81564976	6508942	0	+	0.6	(0.58,1]	chr16	645911	690	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	227	2	6.77976	7.171094999999999	7.56243	1.82142e-4	3.96539e-5	0.00759001	0.00138542
chr15	78927024	78927110	6336936	0	-	0.546512	(0.523,0.58]	chr15	624691	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	CTSH	ENSG00000103811.18	ENST00000677011.1:ENST00000220166.10:ENST00000676639.1:ENST00000676510.1:ENST00000678727.1:ENST00000679334.1:ENST00000679017.1:ENST00000677810.1:ENST00000676763.1:ENST00000678886.1:ENST00000677921.1:ENST00000676596.1:ENST00000678114.1:ENST00000678487.1:ENST00000649928.2:ENST00000527715.6:ENST00000530010.6:ENST00000676671.1:ENST00000534533.6:ENST00000678283.1:ENST00000678841.1:ENST00000679125.1:ENST00000677316.1:ENST00000678031.1:ENST00000678644.1:ENST00000676808.1:ENST00000677207.1:ENST00000676486.1:ENST00000677238.1:ENST00000678281.1:ENST00000678799.1:ENST00000525807.6:ENST00000676588.1:ENST00000528191.6:ENST00000678817.1:ENST00000676880.1:ENST00000528741.6:ENST00000678415.1:ENST00000679172.1:ENST00000533777.5:ENST00000534237.6:ENST00000677448.1:ENST00000677534.1:ENST00000677367.1:ENST00000678397.1:ENST00000679047.1:ENST00000676865.1:ENST00000677102.1:ENST00000677874.1:ENST00000677254.1:ENST00000677936.1:ENST00000678940.1:ENST00000677789.1:ENST00000615999.5:ENST00000677049.1:ENST00000678033.1:ENST00000679211.1:ENST00000676850.1:ENST00000534268.6:ENST00000529861.6:ENST00000676738.1:ENST00000527138.6:ENST00000677320.1:ENST00000529612.6:ENST00000676668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	230	2	6.88251	7.1708549999999995	7.4592	6.56487e-4	6.90788e-5	0.0150669	0.00208248
chr3	136541518	136541618	1923237	0	-	0.43	(0.419,0.45]	chr3	195596	198	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2:ENST00000487065.5:ENST00000462818.1:ENST00000480733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	235	2	6.73041	7.1691	7.60779	0.00486702	2.00245e-5	0.0456282	8.4139e-4
chr2	149630230	149630330	920248	0	+	0.4	(0.39,0.419]	chr2	102788	358	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	1	514	2	6.33457	7.16869	8.00281	3.95352e-4	3.77634e-6	0.0113656	2.60568e-4
chr2	3295501	3295600	1081062	0	-	0.59596	(0.58,1]	chr2	117633	128	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	216	2	7.06859	7.1684350000000006	7.26828	3.5916e-4	1.50295e-5	0.0108463	6.85908e-4
chr8	727255	727354	3933003	0	-	0.59596	(0.58,1]	chr8	376060	109	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	215	2	6.91336	7.16763	7.4219	7.98131e-4	4.42444e-6	0.0167692	2.8801e-4
chr6	28350067	28350167	2889174	0	+	0.59	(0.58,1]	chr6	281297	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZKSCAN3	ENSG00000189298.14	ENST00000252211.7:ENST00000377255.3:ENST00000341464.9	protein_coding	protein_coding	protein_coding	protein_coding	0	248	2	6.4658	7.167624999999999	7.86945	1.09908e-4	8.84248e-5	0.00521355	0.00294443
chr10	7722950	7723050	4442146	0	+	0.6	(0.58,1]	chr10	425525	1	SS3_PROX	SS3_PROX:INTRON	ITIH2	ENSG00000151655.19	ENST00000358415.9:ENST00000379587.4	protein_coding	protein_coding	protein_coding	protein_coding	1	458	2	6.55865	7.1664200000000005	7.77419	1.10803e-4	2.99887e-7	0.00587267	4.74246e-5
chrX	315886	315974	7964854	0	-	0.477273	(0.45,0.485]	chrX	834136	2	INTRON	INTRON	GTPBP6	ENSG00000178605.13	ENST00000326153.9	protein_coding	protein_coding	protein_coding	protein_coding	0	227	2	6.81466	7.166175	7.51769	0.00274987	1.32798e-5	0.0332418	6.28604e-4
chr12	120853934	120854034	5523823	0	-	0.48	(0.45,0.485]	chr12	544174	184	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	0	229	2	6.93131	7.16589	7.40047	8.99052e-4	7.8924e-5	0.0178386	0.0022885
chr10	35075622	35075721	4672531	0	-	0.40404	(0.39,0.419]	chr10	445698	14	INTRON	INTRON	CUL2	ENSG00000108094.17	ENST00000626172.3:ENST00000374751.7:ENST00000374748.5:ENST00000374749.8:ENST00000690123.1:ENST00000691974.1:ENST00000688571.1:ENST00000690393.1:ENST00000374754.9:ENST00000691272.1:ENST00000688390.1:ENST00000687282.1:ENST00000691201.1:ENST00000687194.1:ENST00000691962.1:ENST00000691858.1:ENST00000691263.1:ENST00000687524.1:ENST00000673636.2:ENST00000692866.1:ENST00000693739.1:ENST00000684965.1:ENST00000691457.1:ENST00000688541.1:ENST00000685488.1:ENST00000686903.1:ENST00000684955.1:ENST00000688736.1:ENST00000686156.1:ENST00000685421.1:ENST00000468804.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	243	2	6.69986	7.16559	7.63132	8.03624e-4	2.27791e-4	0.0168608	0.00496195
chr17	81138198	81138298	6982884	0	-	0.56	(0.523,0.58]	chr17	713268	33	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	227	2	6.93213	7.165355	7.39858	7.41711e-4	5.9384e-5	0.0160724	0.00185705
chr17	82717760	82717851	6818055	0	+	0.56044	(0.523,0.58]	chr17	689119	5	INTRON	INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	224	2	7.02653	7.164565	7.3026	8.98889e-4	4.44459e-5	0.0178386	0.00150854
chr19	7269395	7269495	7324970	0	-	0.5	(0.485,0.523]	chr19	756833	11	INTRON	INTRON	INSR	ENSG00000171105.14	ENST00000341500.9:ENST00000302850.10:ENST00000598216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	233	2	6.79219	7.164434999999999	7.53668	5.55391e-4	9.60927e-5	0.0137234	0.00264781
chr10	132596922	132597022	4617430	0	+	0.57	(0.523,0.58]	chr10	441139	584	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	221	2	7.06325	7.163955	7.26466	0.0014427	2.11593e-5	0.023287	8.73984e-4
chr8	108459694	108459792	3902484	0	+	0.408163	(0.39,0.419]	chr8	372963	34	INTRON	INTRON	EMC2	ENSG00000104412.8	ENST00000220853.8:ENST00000517784.5:ENST00000519642.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	226	2	7.04134	7.16386	7.28638	0.00239617	4.31001e-5	0.0309227	0.00147785
chr19	735687	735764	7184609	0	+	0.662338	(0.58,1]	chr19	730572	2	SS3_PROX	SS3_PROX:INTRON	PALM	ENSG00000099864.18	ENST00000338448.10:ENST00000264560.11:ENST00000589012.5:ENST00000593172.5:ENST00000633534.1:ENST00000592155.5:ENST00000590161.2:ENST00000587513.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	261	2	6.3182	7.163345	8.00849	1.74994e-4	6.34868e-5	0.004439	0.00410754
chr13	26254192	26254282	5551187	0	+	0.711111	(0.58,1]	chr13	547911	2	UTR5	UTR5:EXON_MRNA	CDK8	ENSG00000132964.12	ENST00000536792.5:ENST00000381527.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	1461	2	7.15108	7.16281	7.17454	3.95736e-6	4.81255e-9	0.00123353	3.42478e-6
chr10	119347174	119347274	4594719	0	+	0.46	(0.45,0.485]	chr10	439173	202	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	223	2	7.00185	7.16248	7.32311	0.00193567	2.42204e-5	0.0275437	9.65272e-4
chr11	70792046	70792146	5062202	0	-	0.45	(0.419,0.45]	chr11	492701	742	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	839	2	5.13535	7.162145000000001	9.18894	5.10165e-5	1.99105e-5	0.0039548	8.37438e-4
chr15	28653475	28653574	6068893	0	+	0.646465	(0.58,1]	chr15	596168	15	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	0	213	2	7.01408	7.161605	7.30913	6.3791e-4	6.56269e-6	0.0148365	3.8256e-4
chr12	120997877	120997962	5341116	0	+	0.458824	(0.45,0.485]	chr12	521575	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000400024.6:ENST00000560968.5:ENST00000402929.5:ENST00000535955.5:ENST00000538626.2:ENST00000538646.5:ENST00000541924.5:ENST00000544574.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2:ENST00000543255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	227	2	6.78358	7.161265	7.53895	0.00291315	1.24295e-5	0.0342042	5.98526e-4
chr19	1299723	1299823	7187004	0	+	0.73	(0.58,1]	chr19	731146	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	EFNA2	ENSG00000099617.4	ENST00000215368.4	protein_coding	protein_coding	protein_coding	protein_coding	0	246	2	6.26598	7.1607199999999995	8.05546	0.00318361	4.55894e-7	0.0360488	6.24644e-5
chr22	50710816	50710915	7755293	0	+	0.585859	(0.58,1]	chr22	812777	43	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	571	2	6.34498	7.16029	7.9756	2.91696e-5	6.10012e-7	0.00304142	7.54968e-5
chr9	135838161	135838261	4431128	0	-	0.51	(0.485,0.523]	chr9	423507	102	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	232	2	6.60829	7.16015	7.71201	0.00342137	5.44828e-6	0.0374749	3.35909e-4
chr21	43958434	43958534	7625368	0	+	0.49	(0.485,0.523]	chr21	796924	28	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000448845.1:ENST00000422850.5:ENST00000546158.1	protein_coding	protein_coding	protein_coding	protein_coding	0	221	2	6.98339	7.15995	7.33651	0.00167095	1.80479e-5	0.0252949	7.82415e-4
chr10	73707260	73707359	4716778	0	-	0.434343	(0.419,0.45]	chr10	449734	18	INTRON	INTRON	BMS1P4:ENSG00000272140	ENSG00000271816.1:ENSG00000272140.2	ENST00000580790.1:ENST00000415917.2:ENST00000580623.1	lncRNA	lncRNA	lncRNA	lncRNA	0	228	2	6.91127	7.15951	7.40775	0.00356503	3.58484e-5	0.0383188	0.00128261
chr14	34995107	34995204	5777549	0	+	0.484536	(0.45,0.485]	chr14	566416	13	INTRON	INTRON	SRP54	ENSG00000100883.13	ENST00000556994.5:ENST00000678836.1:ENST00000546080.6:ENST00000554803.5:ENST00000555746.6:ENST00000678963.1:ENST00000677561.1:ENST00000678477.1:ENST00000677621.1:ENST00000553923.2:ENST00000679045.1:ENST00000678519.1:ENST00000553544.1:ENST00000678627.1:ENST00000216774.11:ENST00000555317.5:ENST00000555557.5:ENST00000678274.1:ENST00000556380.3:ENST00000555535.1:ENST00000677647.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	224	2	7.0692	7.15931	7.24942	0.0012056600000000001	5.23249e-5	0.0210584	0.0016991
chr2	665645	665744	1079801	0	-	0.50505	(0.485,0.523]	chr2	117536	19	UTR3	UTR3:EXON_MRNA	TMEM18	ENSG00000151353.15	ENST00000281017.8	protein_coding	protein_coding	protein_coding	protein_coding	0	222	2	6.89835	7.15909	7.41983	0.00197036	1.3874e-5	0.0278418	6.45948e-4
chr4	4439508	4439608	2184986	0	-	0.42	(0.419,0.45]	chr4	221823	6	INTRON	INTRON	STX18	ENSG00000168818.10	ENST00000505286.5:ENST00000306200.7:ENST00000503861.5:ENST00000512195.5:ENST00000507908.5:ENST00000512780.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	233	2	6.89842	7.1589100000000006	7.4194	0.00144685	1.51593e-4	0.023316	0.00370696
chr1	17588679	17588779	54066	0	+	0.57	(0.523,0.58]	chr1	5464	2	SS5_PROX	SS5_PROX:INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5	protein_coding	protein_coding	protein_coding	protein_coding	0	221	2	7.12939	7.158635	7.18788	0.00112897	3.23178e-5	0.0202727	0.00118877
chr5	14348599	14348698	2385418	0	+	0.424242	(0.419,0.45]	chr5	238535	115	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000512070.6:ENST00000509967.6:ENST00000513206.5:ENST00000515144.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	511	2	6.1639099999999996	7.15845	8.15299	3.72485e-4	7.44263e-6	0.011082	4.17372e-4
chr6	13591168	13591268	2855859	0	+	0.39	(0.36,0.39]	chr6	279047	1	SS3_PROX	SS3_PROX:INTRON	SIRT5	ENSG00000124523.17	ENST00000680432.1:ENST00000681012.1:ENST00000397350.7:ENST00000680442.1:ENST00000680754.1:ENST00000679658.1:ENST00000681243.1:ENST00000680747.1:ENST00000681818.1:ENST00000680402.1:ENST00000679663.1:ENST00000379250.10:ENST00000680852.1:ENST00000679922.1:ENST00000681231.1:ENST00000359782.8:ENST00000606117.2:ENST00000379262.8:ENST00000681905.1:ENST00000680937.1:ENST00000680151.1:ENST00000680707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	225	2	7.02964	7.1583	7.28696	0.00237667	4.25535e-5	0.0307601	0.00146059
chr9	123885117	123885217	4401445	0	-	0.47	(0.45,0.485]	chr9	419733	57	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	0	234	2	6.77883	7.158015000000001	7.5372	6.87469e-4	1.23522e-4	0.0154413	0.00321265
chr2	171015348	171015448	1312712	0	-	0.4	(0.39,0.419]	chr2	140567	4	SS3_PROX	SS3_PROX:INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	239	2	6.56805	7.157920000000001	7.74779	0.00553508	1.09796e-5	0.0491917	5.5143e-4
chr13	97338827	97338926	5631972	0	+	0.515152	(0.485,0.523]	chr13	553188	40	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	227	2	6.7116	7.157885	7.60417	0.00281636	7.70941e-6	0.0336649	4.27315e-4
chr22	48754330	48754430	7751813	0	+	0.49	(0.485,0.523]	chr22	812294	25	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000336769.9	protein_coding	protein_coding	protein_coding	protein_coding	1	585	2	5.19272	7.157715	9.12271	7.55261e-5	1.95637e-5	0.0025498	0.00222665
chr6	48091926	48092026	3146870	0	-	0.42	(0.419,0.45]	chr6	306795	216	INTRON	INTRON	PTCHD4:ENSG00000286811	ENSG00000244694.8:ENSG00000286811.1	ENST00000339488.9:ENST00000398738.3:ENST00000679966.1:ENST00000661865.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	693	2	5.87513	7.157535	8.43994	2.16212e-4	4.29857e-6	0.00831529	2.82921e-4
chr20	32144393	32144491	7454525	0	+	0.418367	(0.39,0.419]	chr20	775941	9	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	0	232	2	6.70582	7.156140000000001	7.60646	0.00435618	1.67678e-5	0.0427656	7.40492e-4
chr22	36329845	36329945	7806817	0	-	0.49	(0.485,0.523]	chr22	818135	10	INTRON	INTRON	MYH9	ENSG00000100345.23	ENST00000216181.11:ENST00000685801.1:ENST00000692930.1:ENST00000685187.1:ENST00000691687.1:ENST00000685191.1:ENST00000688137.1:ENST00000401701.1:ENST00000691296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	220	2	7.08949	7.15563	7.22177	0.00135789	2.58512e-5	0.0224546	0.0010125
chr10	132713150	132713250	4618599	0	+	0.51	(0.485,0.523]	chr10	441181	23	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000487614.1:ENST00000498337.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	220	2	7.10222	7.15533	7.20844	0.00132433	2.69474e-5	0.0222129	0.00104303
chr5	882715	882785	2608203	0	-	0.571429	(0.523,0.58]	chr5	259474	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	489	2	6.47847	7.155234999999999	7.832	3.0665e-4	1.10338e-6	0.00996904	1.11364e-4
chr11	61272160	61272260	5041297	0	-	0.41	(0.39,0.419]	chr11	488755	4	SS3_PROX	SS3_PROX:INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10:ENST00000535710.1:ENST00000398808.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	1186	2	5.04107	7.154014999999999	9.26696	3.91741e-4	9.70337e-8	0.0113511	2.27769e-5
chr9	129619019	129619118	4251021	0	+	0.50505	(0.485,0.523]	chr9	404743	95	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	0	229	2	6.8275	7.15339	7.47928	6.23933e-4	8.64447e-5	0.0146683	0.00245611
chr12	102204780	102204880	5310244	0	+	0.52	(0.485,0.523]	chr12	517269	73	EXON_LNCRNA	EXON_LNCRNA	HELLPAR	ENSG00000281344.1	ENST00000626826.1	lncRNA	lncRNA	lncRNA	lncRNA	0	221	2	7.08258	7.1531400000000005	7.2237	0.00104165	3.97904e-5	0.0193905	0.00138788
chr10	35465940	35466040	4476973	0	+	0.49	(0.485,0.523]	chr10	428126	101	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	223	2	6.99213	7.153075	7.31402	8.70042e-4	5.25088e-5	0.0175759	0.00170211
chr1	950626	950726	379867	0	-	0.48	(0.45,0.485]	chr1	42701	1	SS5_PROX	SS5_PROX:INTRON	NOC2L	ENSG00000188976.11	ENST00000327044.7:ENST00000477976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	225	2	6.7992	7.15307	7.50694	0.00282996	1.3731e-5	0.033746	6.43436e-4
chr11	86257114	86257214	4909695	0	+	0.54	(0.523,0.58]	chr11	474028	2	SS3_PROX	SS3_PROX:INTRON	EED	ENSG00000074266.22	ENST00000263360.11:ENST00000528180.5:ENST00000672825.1:ENST00000673233.2:ENST00000327320.8:ENST00000351625.10:ENST00000534595.1:ENST00000525244.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	220	2	7.12939	7.15264	7.17589	0.00115604	3.23178e-5	0.0205679	0.00118877
chr11	484655	484754	4784652	0	+	0.616162	(0.58,1]	chr11	457913	42	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	223	2	6.57947	7.15231	7.72515	0.00165065	1.50778e-6	0.0250898	1.37398e-4
chr4	4439408	4439508	2184985	0	-	0.4	(0.39,0.419]	chr4	221823	5	INTRON	INTRON	STX18	ENSG00000168818.10	ENST00000505286.5:ENST00000306200.7:ENST00000503861.5:ENST00000512195.5:ENST00000507908.5:ENST00000512780.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	230	2	6.90694	7.15203	7.39712	0.00124687	1.27923e-4	0.0214752	0.00328053
chr1	228144127	228144227	358025	0	+	0.55	(0.523,0.58]	chr1	40401	19	INTRON	INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	221	2	7.0566700000000004	7.151525	7.24638	0.00100536	4.04959e-5	0.0190855	0.00140723
chr7	47376615	47376715	3587558	0	-	0.29	[0,0.29]	chr7	346036	66	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	215	2	7.10146	7.151395	7.20133	6.02027e-4	1.93276e-5	0.0143848	8.22813e-4
chrX	9492994	9493094	7842724	0	+	0.47	(0.45,0.485]	chrX	822398	272	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	0	221	2	7.09341	7.150895	7.20838	0.00162663	3.43738e-5	0.0249683	0.00124793
chr11	68421597	68421696	4883186	0	+	0.454545	(0.45,0.485]	chr11	470622	47	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	543	2	5.41386	7.150795	8.88773	4.47933e-5	4.38025e-5	0.00367146	0.00151793
chr17	58369029	58369128	6932559	0	-	0.474747	(0.45,0.485]	chr17	706609	51	INTRON	INTRON	RNF43	ENSG00000108375.13	ENST00000577716.5:ENST00000407977.7:ENST00000584437.5:ENST00000583753.5:ENST00000577625.5:ENST00000581868.1	protein_coding	protein_coding	protein_coding	protein_coding	3	1766	2	6.51571	7.15043	7.78515	2.70075e-5	1.9474e-8	0.00294696	8.14849e-6
chr21	43959133	43959233	7625375	0	+	0.54	(0.523,0.58]	chr21	796925	1	SS3_PROX	SS3_PROX:INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000448845.1:ENST00000422850.5:ENST00000546158.1	protein_coding	protein_coding	protein_coding	protein_coding	0	219	2	7.10179	7.1502	7.19861	0.00133774	2.60365e-5	0.0223452	0.00101533
chr4	6665009	6665108	2186187	0	-	0.535354	(0.523,0.58]	chr4	221877	26	INTRON	INTRON	LINC02482	ENSG00000251580.3	ENST00000647523.2:ENST00000667300.1	lncRNA	lncRNA	lncRNA	lncRNA	0	223	2	6.77614	7.15006	7.52398	0.00251197	9.2742e-6	0.031696	4.87501e-4
chr20	64022059	64022157	7510622	0	+	0.561224	(0.523,0.58]	chr20	783726	49	INTRON	INTRON	PRPF6	ENSG00000101161.8	ENST00000266079.5	protein_coding	protein_coding	protein_coding	protein_coding	0	221	2	6.85345	7.1499299999999995	7.44641	0.00216679	1.18895e-5	0.0292299	5.81984e-4
chr11	71484645	71484745	4887709	0	+	0.56	(0.523,0.58]	chr11	471504	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NADSYN1	ENSG00000172890.13	ENST00000319023.7:ENST00000525200.5:ENST00000529840.5:ENST00000530055.5:ENST00000526039.6:ENST00000531236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	221	2	7.04168	7.1497399999999995	7.2578	9.82792e-4	4.24161e-5	0.0187972	0.00145737
chr4	177436075	177436175	2365540	0	-	0.52	(0.485,0.523]	chr4	236153	4	SS5_PROX	SS5_PROX:INTRON	AGA	ENSG00000038002.9	ENST00000264595.7:ENST00000502310.5:ENST00000506853.5:ENST00000510635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	219	2	7.05061	7.1493400000000005	7.24807	0.00146547	2.38146e-5	0.023492	9.55691e-4
chr4	183243728	183243827	2168845	0	+	0.424242	(0.419,0.45]	chr4	219519	31	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000508614.5:ENST00000448232.6:ENST00000513834.5:ENST00000427431.5:ENST00000438543.5:ENST00000504005.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	240	2	6.7098	7.149095000000001	7.58839	0.00106381	2.54121e-4	0.0196024	0.00539144
chr12	122094962	122095062	5343538	0	+	0.56	(0.523,0.58]	chr12	521864	153	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	227	2	6.84845	7.14886	7.44927	6.69765e-4	7.65992e-5	0.0152294	0.00224403
chr5	175923263	175923363	2814518	0	-	0.46	(0.45,0.485]	chr5	275558	47	INTRON	INTRON	THOC3	ENSG00000051596.10	ENST00000432305.6	protein_coding	protein_coding	protein_coding	protein_coding	0	237	2	6.50739	7.14874	7.79009	0.00482293	5.64815e-6	0.0453395	3.44583e-4
chr10	79164430	79164530	4533001	0	+	0.44	(0.419,0.45]	chr10	432438	19	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	228	2	6.99178	7.14862	7.30546	0.0017767	1.16955e-4	0.0262235	0.00308693
chr2	218583186	218583286	1034174	0	+	0.49	(0.485,0.523]	chr2	112349	1	SS5_PROX	SS5_PROX:INTRON	CNOT9	ENSG00000144580.14	ENST00000627282.2:ENST00000542068.5:ENST00000273064.11:ENST00000432877.5:ENST00000295701.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	249	2	6.49563	7.148585000000001	7.80154	3.22875e-4	2.29841e-4	0.0102338	0.00498593
chr10	121770253	121770352	4775949	0	-	0.40404	(0.39,0.419]	chr10	456611	54	INTRON	INTRON	ATE1	ENSG00000107669.19	ENST00000690984.1:ENST00000369043.8:ENST00000224652.12:ENST00000693411.1:ENST00000540606.7:ENST00000690773.1:ENST00000686894.1:ENST00000685890.1:ENST00000687583.1:ENST00000693276.1:ENST00000686451.1:ENST00000687319.1:ENST00000686786.1:ENST00000684967.1:ENST00000689057.1:ENST00000692329.1:ENST00000689393.1:ENST00000689571.1:ENST00000692718.1:ENST00000688526.1:ENST00000692034.1:ENST00000690128.1:ENST00000690748.1:ENST00000692491.1:ENST00000369040.9:ENST00000691087.1:ENST00000691830.1:ENST00000687089.1:ENST00000693486.1:ENST00000690355.1:ENST00000691765.1:ENST00000691226.1:ENST00000692743.1:ENST00000691108.1:ENST00000689297.1:ENST00000685427.1:ENST00000692513.1:ENST00000688057.1:ENST00000684876.1:ENST00000687607.1:ENST00000688424.1:ENST00000692255.1:ENST00000690706.1:ENST00000693395.1:ENST00000690324.1:ENST00000692278.1:ENST00000687144.1:ENST00000691573.1:ENST00000685289.1:ENST00000686907.1:ENST00000687206.1:ENST00000685007.1:ENST00000686811.1:ENST00000691041.1:ENST00000423243.7:ENST00000689834.1:ENST00000689455.1:ENST00000693655.1:ENST00000691728.1:ENST00000688153.1:ENST00000689974.1:ENST00000689199.1:ENST00000690488.1:ENST00000687458.1:ENST00000685072.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	225	2	7.05935	7.14761	7.23587	0.00168028	8.30081e-5	0.0253887	0.00237656
chr8	133296638	133296690	4084296	0	-	0.576923	(0.523,0.58]	chr8	388370	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000520943.5:ENST00000521544.5:ENST00000523892.5:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	1060	2	6.86558	7.14752	7.42946	7.2723e-5	7.81297e-6	0.00216169	0.00169721
chr17	77216062	77216159	6803135	0	+	0.525773	(0.523,0.58]	chr17	686684	22	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	1	576	2	5.80049	7.1466199999999995	8.49275	2.61203e-4	3.78188e-7	0.00915319	5.51827e-5
chr20	345605	345704	7511899	0	-	0.383838	(0.36,0.39]	chr20	783986	205	INTRON	INTRON	NRSN2-AS1	ENSG00000225377.6	ENST00000442637.2:ENST00000662580.1	lncRNA	lncRNA	lncRNA	lncRNA	0	224	2	7.08856	7.145635	7.20271	0.0017314	7.55582e-5	0.0257605	0.00222665
chr8	133287759	133287859	4084202	0	-	0.55	(0.523,0.58]	chr8	388351	1	SS5_PROX	SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000676005.1:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1:ENST00000674839.1:ENST00000676064.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	342	2	5.77287	7.145524999999999	8.51818	0.00160162	7.27072e-5	0.0197827	0.00477445
chr11	57500106	57500192	5038774	0	-	0.406977	(0.39,0.419]	chr11	488207	6	INTRON	INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	677	2	5.86275	7.14543	8.42811	1.72806e-4	3.80049e-6	0.00735687	2.62126e-4
chr19	41377046	41377146	7263506	0	+	0.54	(0.523,0.58]	chr19	745095	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TMEM91	ENSG00000142046.15	ENST00000539627.5:ENST00000604123.5:ENST00000413014.6:ENST00000392002.7:ENST00000436170.6:ENST00000447302.6:ENST00000544232.5:ENST00000542945.5:ENST00000537354.5	protein_coding	protein_coding	protein_coding	protein_coding	0	246	2	6.52102	7.14528	7.76954	3.48766e-4	2.02818e-4	0.0106878	0.0045746
chr1	245798441	245798541	698756	0	-	0.46	(0.45,0.485]	chr1	82352	96	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000490322.1:ENST00000493441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	240	2	6.62829	7.145185	7.66208	5.36919e-4	1.90839e-4	0.0135174	0.0043642
chr10	103718777	103718877	4757288	0	-	0.47	(0.45,0.485]	chr10	454791	253	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	226	2	6.89879	7.144489999999999	7.39019	9.17281e-4	8.68871e-5	0.0180726	0.00246367
chr16	89913910	89914005	6526315	0	+	0.589474	(0.58,1]	chr16	647716	4	UTR5	UTR5:EXON_MRNA:INTRON	ENSG00000267048:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000539976.1:ENST00000555427.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	3	1536	2	6.68368	7.14417	7.60466	1.26656e-5	9.16321e-10	0.0020724	1.23304e-6
chr20	34565555	34565654	7547083	0	-	0.545455	(0.523,0.58]	chr20	787854	42	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	0	218	2	7.07621	7.144135	7.21206	0.00140655	2.49617e-5	0.0229261	9.86867e-4
chr2	665744	665842	1079802	0	-	0.540816	(0.523,0.58]	chr2	117536	20	UTR3	UTR3:EXON_MRNA	TMEM18	ENSG00000151353.15	ENST00000281017.8	protein_coding	protein_coding	protein_coding	protein_coding	0	218	2	7.01022	7.14387	7.27752	0.0016001	2.03194e-5	0.0246878	8.47843e-4
chr10	131957451	131957551	4616602	0	+	0.61	(0.58,1]	chr10	441116	16	UTR3	UTR3:EXON_MRNA	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000470416.5:ENST00000649083.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	215	2	6.93984	7.1437349999999995	7.34763	2.99474e-4	2.32442e-5	0.00982269	9.36605e-4
chr9	133691124	133691222	4427474	0	-	0.530612	(0.523,0.58]	chr9	423045	2	INTRON	INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000371868.5	protein_coding	protein_coding	protein_coding	protein_coding	0	221	2	6.99575	7.1436399999999995	7.29153	9.18957e-4	4.88649e-5	0.0180726	0.00161739
chr8	8874296	8874396	3935545	0	-	0.36	(0.33,0.36]	chr8	376201	144	INTRON	INTRON	MFHAS1	ENSG00000147324.11	ENST00000276282.7	protein_coding	protein_coding	protein_coding	protein_coding	0	221	2	7.07845	7.14345	7.20845	0.00175547	4.37819e-5	0.0260004	0.00149507
chr19	46978591	46978691	7275359	0	+	0.62	(0.58,1]	chr19	747275	408	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	216	2	6.90577	7.143055	7.38034	2.77767e-4	2.60624e-5	0.00947659	0.00101533
chr6	167963153	167963248	3074743	0	+	0.378947	(0.36,0.39]	chr6	298970	7	UTR3	UTR3:EXON_MRNA:INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7:ENST00000507704.5:ENST00000515794.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	228	2	6.90751	7.14276	7.37801	0.0012506	1.26468e-4	0.0215229	0.00325863
chr7	127953213	127953313	3471259	0	+	0.44	(0.419,0.45]	chr7	335423	36	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	233	2	6.6478	7.142390000000001	7.63698	0.00559992	1.83807e-5	0.0493906	7.9377e-4
chr16	81540582	81540682	6508699	0	+	0.5	(0.485,0.523]	chr16	645911	447	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	531	2	5.41721	7.14213	8.86705	3.74764e-5	3.39831e-5	0.00324013	0.00132426
chr6	3146846	3146945	2828607	0	+	0.545455	(0.523,0.58]	chr6	277604	60	INTRON	INTRON	BPHL	ENSG00000137274.13	ENST00000434640.5:ENST00000430655.6:ENST00000424847.6:ENST00000433912.5:ENST00000380379.10:ENST00000490918.5:ENST00000380375.4:ENST00000488487.2:ENST00000423798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	239	2	6.60501	7.142005	7.679	4.19964e-4	1.58554e-4	0.011772	0.00384084
chr5	616805	616904	2378438	0	+	0.585859	(0.58,1]	chr5	237586	40	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6	protein_coding	protein_coding	protein_coding	protein_coding	0	210	2	7.02791	7.141975	7.25604	6.18479e-4	7.89156e-6	0.0145945	4.34116e-4
chr15	60493965	60494064	6284446	0	-	0.515152	(0.485,0.523]	chr15	619448	58	UTR3	UTR3:EXON_MRNA	RORA	ENSG00000069667.16	ENST00000335670.11	protein_coding	protein_coding	protein_coding	protein_coding	2	1769	2	6.21722	7.141895	8.06657	2.81396e-6	1.89259e-6	0.0010103	2.10228e-4
chr22	48754430	48754530	7751814	0	+	0.51	(0.485,0.523]	chr22	812294	26	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000336769.9	protein_coding	protein_coding	protein_coding	protein_coding	0	251	2	6.45105	7.14174	7.83243	3.0292e-4	2.61322e-4	0.00988096	0.00551565
chr20	25350983	25351083	7539059	0	-	0.43	(0.419,0.45]	chr20	786928	85	INTRON	INTRON	ABHD12	ENSG00000100997.20	ENST00000376542.8:ENST00000339157.10:ENST00000672406.1:ENST00000672566.1:ENST00000673121.1:ENST00000471287.5:ENST00000461204.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	227	2	6.97664	7.14105	7.30546	0.0017767	1.22002e-4	0.0262235	0.00318856
chr1	246234123	246234223	703126	0	-	0.44	(0.419,0.45]	chr1	82422	405	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	236	2	6.57813	7.14051	7.70289	0.00629696	1.51402e-5	0.0523832	6.8895e-4
chr13	33334815	33334904	5685950	0	-	0.505618	(0.485,0.523]	chr13	558211	4	SS5_PROX	SS5_PROX:INTRON	STARD13:LINC02344	ENSG00000133121.21:ENSG00000227911.3	ENST00000567873.1:ENST00000443576.3	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	220	2	6.82345	7.138785	7.45412	0.00227572	1.24448e-5	0.0301405	5.98526e-4
chr18	74514407	74514501	7088607	0	+	0.414894	(0.39,0.419]	chr18	722320	3	INTRON	INTRON	CNDP2	ENSG00000133313.15	ENST00000579847.5:ENST00000324262.9:ENST00000324301.12:ENST00000584581.5:ENST00000579624.1:ENST00000583695.1:ENST00000581600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	222	2	7.06714	7.138705	7.21027	0.00228675	5.37675e-5	0.0302327	0.0017322
chr18	69768925	69769025	7086872	0	+	0.4	(0.39,0.419]	chr18	722163	107	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10:ENST00000577609.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	222	2	7.07987	7.138525	7.19718	0.00223454	5.58433e-5	0.0297409	0.00177997
chr7	47351635	47351734	3587307	0	-	0.575758	(0.523,0.58]	chr7	346030	49	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	472	2	6.00111	7.13842	8.27573	1.21483e-4	5.4177e-6	0.00611516	3.34515e-4
chr1	1052112	1052208	1285	0	+	0.666667	(0.58,1]	chr1	283	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	217	2	6.85311	7.137975	7.42284	2.51834e-4	3.10807e-5	0.0089838	0.00115612
chr13	113215659	113215759	5657364	0	+	0.61	(0.58,1]	chr13	555523	52	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000488558.2:ENST00000375440.9:ENST00000474116.5:ENST00000494985.5:ENST00000463426.5:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	210	2	6.92818	7.137945	7.34771	7.72338e-4	5.73693e-6	0.0164417	3.48335e-4
chr6	160105874	160105972	3066705	0	+	0.418367	(0.39,0.419]	chr6	298183	9	UTR3	UTR3:EXON_MRNA:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1:ENST00000677628.1:ENST00000569097.2:ENST00000475584.1:ENST00000678224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	3788	2	5.6756	7.137930000000001	8.60026	1.44899e-6	7.70526e-7	9.54163e-4	8.87563e-5
chr11	484456	484556	4784650	0	+	0.6	(0.58,1]	chr11	457913	40	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	220	2	6.57947	7.13751	7.69555	0.00165065	1.6765e-6	0.0250898	1.47289e-4
chr8	127849540	127849640	3918338	0	+	0.44	(0.419,0.45]	chr8	374180	29	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000655594.1	lncRNA	lncRNA	lncRNA	lncRNA	1	527	2	6.50299	7.1371	7.77121	7.59955e-4	2.6473e-6	0.0162896	2.01178e-4
chr19	5287933	5288033	7316487	0	-	0.49	(0.485,0.523]	chr19	755347	13	INTRON	INTRON	PTPRS	ENSG00000105426.18	ENST00000588552.5:ENST00000262963.11:ENST00000591760.5:ENST00000586065.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	219	2	7.03806	7.13668	7.2353	0.00101791	4.56236e-5	0.0191524	0.00154047
chr7	47475207	47475307	3588560	0	-	0.6	(0.58,1]	chr7	346123	221	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	518	2	5.78846	7.135574999999999	8.48269	1.12449e-4	9.41998e-8	0.00592121	2.24672e-5
chr8	133296736	133296830	4084298	0	-	0.638298	(0.58,1]	chr8	388372	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000520943.5:ENST00000521544.5:ENST00000523892.5:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	1242	2	6.34387	7.13472	7.92557	1.61506e-4	5.63275e-7	0.00387712	7.30832e-4
chr16	618660	618760	6368580	0	+	0.61	(0.58,1]	chr16	628043	4	SS5_PROX	SS5_PROX:INTRON	RAB40C	ENSG00000197562.10	ENST00000535977.5:ENST00000569575.5:ENST00000539661.5:ENST00000566290.5:ENST00000248139.8:ENST00000568586.5:ENST00000538492.5:ENST00000565511.5:ENST00000509637.6:ENST00000563109.1:ENST00000564703.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	212	2	6.98948	7.134685	7.27989	3.49762e-4	1.96603e-5	0.0106878	8.29491e-4
chr3	44975732	44975832	1756968	0	-	0.54	(0.523,0.58]	chr3	181052	4	SS5_PROX	SS5_PROX:INTRON	ZDHHC3	ENSG00000163812.15	ENST00000339420.7:ENST00000424952.7:ENST00000296127.7:ENST00000342790.8:ENST00000455235.5	protein_coding	protein_coding	protein_coding	protein_coding	0	220	2	6.96429	7.133445	7.3026	8.98889e-4	5.38186e-5	0.0178386	0.0017322
chr2	53965052	53965151	1147670	0	-	0.383838	(0.36,0.39]	chr2	125423	154	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	221	2	7.04271	7.13326	7.22381	0.00232085	5.11391e-5	0.030354	0.00167326
chr2	72968147	72968247	1188474	0	-	0.59	(0.58,1]	chr2	128799	3	SS5_PROX	SS5_PROX:INTRON	SFXN5	ENSG00000144040.13	ENST00000272433.7:ENST00000461352.5:ENST00000474528.5:ENST00000495208.5:ENST00000482289.5:ENST00000490056.5:ENST00000411783.5:ENST00000410065.5:ENST00000482542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	221	2	6.74164	7.1327750000000005	7.52391	1.99239e-4	4.4971e-5	0.00796847	0.00152119
chr2	239371601	239371701	1392428	0	-	0.48	(0.45,0.485]	chr2	148759	183	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	481	2	6.24143	7.132250000000001	8.02307	2.6019e-4	3.26915e-6	0.00912846	2.33734e-4
chr17	78698167	78698267	6978462	0	-	0.58	(0.523,0.58]	chr17	712566	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000589297.5:ENST00000585509.5:ENST00000591574.5:ENST00000590775.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	313	2	5.91127	7.131785	8.3523	0.00111349	1.03353e-4	0.0152496	0.0056665
chr22	20122638	20122697	7686868	0	+	0.728814	(0.58,1]	chr22	804210	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000488484.1:ENST00000331821.7:ENST00000411892.5:ENST00000423859.5:ENST00000418705.2:ENST00000448394.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	209	2	7.1289	7.13147	7.13404	4.87191e-4	1.22303e-5	0.0127785	5.9245e-4
chr6	31651960	31652059	3119042	0	-	0.585859	(0.58,1]	chr6	303154	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BAG6	ENSG00000204463.14	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.2:ENST00000375976.8:ENST00000362049.10:ENST00000439687.6:ENST00000437771.5:ENST00000435080.5:ENST00000456622.5:ENST00000452994.5:ENST00000428326.5:ENST00000451898.5:ENST00000433828.5:ENST00000424480.5:ENST00000424176.5:ENST00000441054.5:ENST00000456286.5:ENST00000454165.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	209	2	7.1289	7.13147	7.13404	4.87191e-4	1.22303e-5	0.0127785	5.9245e-4
chr16	87738527	87738626	6656466	0	-	0.575758	(0.523,0.58]	chr16	665892	75	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	468	2	6.10387	7.131314999999999	8.15876	1.55348e-4	3.85819e-6	0.00693487	2.64153e-4
chr19	1642068	1642168	7306930	0	-	0.46	(0.45,0.485]	chr19	753295	93	INTRON	INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000395423.7:ENST00000587235.6:ENST00000586318.1	protein_coding	protein_coding	protein_coding	protein_coding	0	221	2	6.7992	7.131164999999999	7.46313	0.00282996	1.57306e-5	0.033746	7.09232e-4
chr5	1326436	1326534	2609079	0	-	0.5	(0.485,0.523]	chr5	259719	1	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	219	2	6.80799	7.131055	7.45412	0.0023441	1.24448e-5	0.0305023	5.98526e-4
chr9	123489019	123489119	4397466	0	-	0.5	(0.485,0.523]	chr9	419652	30	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	223	2	6.86196	7.130485	7.39901	7.33641e-4	7.79323e-5	0.0159757	0.00227427
chr6	3352260	3352360	3087012	0	-	0.48	(0.45,0.485]	chr6	299774	279	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000496753.1:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	581	2	5.75197	7.13017	8.50837	3.42156e-4	5.57597e-7	0.0105838	7.12027e-5
chr10	132712252	132712352	4618590	0	+	0.5	(0.485,0.523]	chr10	441181	14	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000487614.1:ENST00000498337.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	219	2	6.97648	7.128645	7.28081	9.29716e-4	5.50755e-5	0.0182159	0.00176017
chr1	44520025	44520125	113203	0	+	0.42	(0.419,0.45]	chr1	14018	1003	INTRON	INTRON	RNF220	ENSG00000187147.18	ENST00000355387.6:ENST00000361799.7:ENST00000372247.6	protein_coding	protein_coding	protein_coding	protein_coding	1	1151	2	6.86591	7.12828	7.39065	1.65832e-4	2.22251e-5	0.00396002	0.00272839
chr18	77118726	77118825	7181508	0	-	0.545455	(0.523,0.58]	chr18	730186	131	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1:ENST00000583798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	251	2	6.40865	7.127924999999999	7.8472	2.97175e-4	2.80789e-4	0.00982269	0.00578259
chr6	5709701	5709801	2836873	0	+	0.56	(0.523,0.58]	chr6	277888	960	INTRON	INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000648580.1:ENST00000274680.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	218	2	6.80756	7.1269849999999995	7.44641	0.00236582	1.18895e-5	0.0306624	5.81984e-4
chr5	177089793	177089857	2597787	0	+	0.640625	(0.58,1]	chr5	257898	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FGFR4	ENSG00000160867.15	ENST00000393648.6:ENST00000503708.5:ENST00000502906.5:ENST00000514472.1:ENST00000292408.9:ENST00000507708.1:ENST00000510911.5:ENST00000513166.1:ENST00000393637.5:ENST00000430285.5:ENST00000426612.5:ENST00000509511.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	208	2	6.95739	7.126715	7.29604	7.23847e-4	6.86847e-6	0.0158739	3.9491e-4
chr17	77485126	77485226	6805233	0	+	0.52	(0.485,0.523]	chr17	686821	11	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	581	2	5.98285	7.12604	8.26923	1.76168e-4	8.75797e-7	0.0074608	9.63871e-5
chr13	98206123	98206223	5634289	0	+	0.47	(0.45,0.485]	chr13	553462	278	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000600648.1:ENST00000596580.2:ENST00000376581.9:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	246	2	6.4823	7.1257	7.7691	4.3379e-4	2.88849e-4	0.0119405	0.00590733
chr17	80290469	80290569	6807476	0	+	0.54	(0.523,0.58]	chr17	687388	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000319921.4:ENST00000559070.5:ENST00000573548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	223	2	6.64312	7.12546	7.6078	0.00323048	7.07993e-6	0.0362983	4.04575e-4
chr7	47476006	47476106	3588568	0	-	0.56	(0.523,0.58]	chr7	346123	229	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	219	2	6.9483	7.12545	7.3026	8.98889e-4	5.65196e-5	0.0178386	0.00179471
chr1	146153969	146154068	579283	0	-	0.40404	(0.39,0.419]	chr1	66467	59	INTRON	INTRON	NOTCH2NLA	ENSG00000264343.7	ENST00000579793.6	protein_coding	protein_coding	protein_coding	protein_coding	0	232	2	6.73651	7.1254	7.51429	0.00100172	2.05874e-4	0.019049	0.00461335
chr2	87528815	87528915	847938	0	+	0.49	(0.485,0.523]	chr2	95749	74	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000642451.1:ENST00000644478.1:ENST00000409139.6:ENST00000644125.1:ENST00000643743.1:ENST00000643276.1:ENST00000409898.2:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000646636.1:ENST00000629257.1:ENST00000409054.2	lncRNA	lncRNA	lncRNA	lncRNA	0	218	2	6.80799	7.125385	7.44278	0.0023441	1.29007e-5	0.0305023	6.14919e-4
chr2	7030215	7030315	712573	0	+	0.47	(0.45,0.485]	chr2	83314	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RNF144A	ENSG00000151692.15	ENST00000320892.11:ENST00000467276.5:ENST00000432850.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	217	2	7.0418	7.12509	7.20838	0.00179449	3.43738e-5	0.0262815	0.00124793
chr1	5873970	5874070	386555	0	-	0.57	(0.523,0.58]	chr1	44376	1	SS5_PROX	SS5_PROX:INTRON	NPHP4	ENSG00000131697.18	ENST00000378156.9:ENST00000478423.6:ENST00000489180.6:ENST00000378169.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	230	2	6.49658	7.12476	7.75294	0.00424382	4.42065e-6	0.0422099	2.8801e-4
chr20	37394477	37394577	7473047	0	+	0.48	(0.45,0.485]	chr20	778187	2	SS5_PROX	SS5_PROX:INTRON	SRC	ENSG00000197122.13	ENST00000692112.1:ENST00000692423.1:ENST00000373578.7:ENST00000373567.6:ENST00000373558.2:ENST00000358208.9:ENST00000489153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	217	2	7.08068	7.12435	7.16802	0.00166658	3.88487e-5	0.0252632	0.00136211
chr7	208397	208497	3305738	0	+	0.58	(0.523,0.58]	chr7	320156	1	SS3_PROX	SS3_PROX:INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6:ENST00000477004.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	216	2	6.88325	7.1238399999999995	7.36443	0.00204616	1.54352e-5	0.0283511	6.98728e-4
chr17	47545993	47546093	6747486	0	+	0.45	(0.419,0.45]	chr17	679608	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NPEPPS	ENSG00000141279.17	ENST00000525007.5:ENST00000525037.5:ENST00000677710.1:ENST00000530173.6:ENST00000526247.6:ENST00000677226.1:ENST00000322157.9:ENST00000678461.1:ENST00000532729.6:ENST00000533573.5:ENST00000677120.1:ENST00000678909.1:ENST00000678496.1:ENST00000678262.1:ENST00000677370.1:ENST00000677664.1:ENST00000528751.6:ENST00000527298.5:ENST00000534691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	230	2	6.7986	7.12379	7.44898	0.00137138	1.99513e-4	0.0226056	0.00452558
chr13	113332770	113332870	5753258	0	-	0.64	(0.58,1]	chr13	564094	63	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	0	213	2	6.88843	7.123525	7.35862	2.92006e-4	2.76213e-5	0.00970248	0.00106056
chr18	79358853	79358953	7099874	0	+	0.64	(0.58,1]	chr18	722964	1	SS3_PROX	SS3_PROX:INTRON	ATP9B	ENSG00000166377.21	ENST00000426216.6:ENST00000307671.12:ENST00000490210.6:ENST00000590477.5:ENST00000589951.5:ENST00000588921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	213	2	6.88843	7.123525	7.35862	2.92006e-4	2.76213e-5	0.00970248	0.00106056
chr22	19899667	19899766	7765040	0	-	0.464646	(0.45,0.485]	chr22	813988	2	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	217	2	7.10603	7.12325	7.14047	0.00158793	4.22229e-5	0.0245893	0.0014546
chr5	1326260	1326348	2609077	0	-	0.568182	(0.523,0.58]	chr5	259718	1	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000507195.5:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	217	2	6.82302	7.12324	7.42346	0.00229691	1.27928e-5	0.0302623	6.12982e-4
chr20	47654801	47654899	7490130	0	+	0.357143	(0.33,0.36]	chr20	780768	15	UTR3	UTR3:EXON_MRNA	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	1	582	2	5.69819	7.123135	8.54808	3.9912e-4	6.94054e-7	0.0114335	8.24354e-5
chr5	60322409	60322508	2677377	0	-	0.393939	(0.39,0.419]	chr5	264422	184	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000502484.6:ENST00000509355.5:ENST00000506024.5:ENST00000506510.6:ENST00000511382.1:ENST00000505507.6:ENST00000514552.5:ENST00000515835.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	242	2	6.56375	7.12302	7.68229	7.29725e-4	3.30465e-4	0.0159289	0.00649658
chr12	132950662	132950762	5542038	0	-	0.43	(0.419,0.45]	chr12	547064	20	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	221	2	6.98042	7.12293	7.26544	0.00316046	5.39706e-5	0.0359603	0.00173477
chr17	80893287	80893369	6812410	0	+	0.682927	(0.58,1]	chr17	687925	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPTOR	ENSG00000141564.15	ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	432	2	6.1363	7.122905	8.10951	4.98328e-5	1.41772e-6	0.00389327	1.31693e-4
chr1	5868494	5868593	386498	0	-	0.515152	(0.485,0.523]	chr1	44370	2	INTRON	INTRON	NPHP4	ENSG00000131697.18	ENST00000378156.9:ENST00000478423.6:ENST00000489180.6:ENST00000378169.7:ENST00000468253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	231	2	6.4776	7.1226	7.7676	0.00436205	4.55136e-6	0.0427656	2.94841e-4
chr2	235802886	235802984	1065639	0	+	0.438776	(0.419,0.45]	chr2	115712	30	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	222	2	7.05083	7.12213	7.19343	0.00217056	9.91396e-5	0.029243	0.00271927
chr2	149697722	149697822	920923	0	+	0.41	(0.39,0.419]	chr2	102788	1033	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	1	494	2	6.21417	7.121734999999999	8.0293	3.75655e-4	5.48048e-6	0.011137	3.37015e-4
chr16	85514983	85515083	6518221	0	+	0.48	(0.45,0.485]	chr16	646391	1557	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	245	2	6.4823	7.121725	7.76115	4.40743e-4	2.88849e-4	0.0120637	0.00590733
chr2	120277614	120277714	887948	0	+	0.42	(0.419,0.45]	chr2	100428	235	INTRON	INTRON	RALB	ENSG00000144118.14	ENST00000447591.5:ENST00000420510.5:ENST00000431732.5:ENST00000272519.10:ENST00000631312.2:ENST00000470417.1:ENST00000412383.5:ENST00000449649.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	228	2	6.66471	7.12135	7.57799	0.00544202	2.18502e-5	0.0486855	8.98326e-4
chr11	112254878	112254978	4942413	0	+	0.48	(0.45,0.485]	chr11	476600	170	INTRON	INTRON	PTS	ENSG00000150787.8	ENST00000531673.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	221	2	6.91514	7.12103	7.32692	0.00103756	8.2790699999999993e-05	0.019365	0.00237398
chr14	103105839	103105928	5921877	0	+	0.483146	(0.45,0.485]	chr14	579221	4	INTRON	INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	217	2	6.91846	7.120785	7.32311	0.00226513	2.42204e-5	0.0300628	9.65272e-4
chr16	12261942	12262042	6392488	0	+	0.64	(0.58,1]	chr16	631965	619	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	234	2	6.28914	7.1199449999999995	7.95075	0.00303562	6.67696e-7	0.0350226	8.03272e-5
chr12	132528587	132528687	5352901	0	+	0.69	(0.58,1]	chr12	523670	2	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	209	2	7.00565	7.11927	7.23289	3.89345e-4	1.8613e-5	0.0113333	8.01738e-4
chr9	4728895	4728994	4270062	0	-	0.191919	[0,0.29]	chr9	407917	59	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	0	216	2	6.86472	7.119145	7.37357	3.27779e-4	5.62638e-5	0.010311	0.00178963
chr19	7640307	7640403	7199319	0	+	0.5	(0.485,0.523]	chr19	733972	1	SS3_PROX	SS3_PROX:INTRON	STXBP2	ENSG00000076944.17	ENST00000593535.5:ENST00000595950.5:ENST00000221283.10:ENST00000441779.6:ENST00000597068.5:ENST00000414284.6:ENST00000599737.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	625	2	5.80125	7.118395	8.43554	8.55192e-5	2.34651e-6	0.00513437	1.86023e-4
chr22	20124138	20124235	7686884	0	+	0.536082	(0.523,0.58]	chr22	804214	1	EXON_MRNA	EXON_MRNA:INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000331821.7:ENST00000411892.5:ENST00000423859.5:ENST00000418705.2:ENST00000448394.2:ENST00000486575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	221	2	6.84845	7.11834	7.38823	7.573e-4	7.65992e-5	0.0162522	0.00224403
chr2	38365173	38365272	1124218	0	-	0.30303	(0.29,0.33]	chr2	123043	57	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000472097.1:ENST00000451483.1:ENST00000416222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	215	2	7.07715	7.11806	7.15897	0.00101941	4.44623e-5	0.0191632	0.00150854
chr12	56597739	56597837	5437630	0	-	0.612245	(0.58,1]	chr12	534676	23	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	0	218	2	6.74164	7.11798	7.49432	2.13416e-4	4.4971e-5	0.00826482	0.00152119
chr2	239347481	239347581	1392185	0	-	0.44	(0.419,0.45]	chr2	148752	230	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	228	2	6.6478	7.117895	7.58799	0.00559992	2.122e-5	0.0493906	8.76062e-4
chr16	69072093	69072193	6481121	0	+	0.44	(0.419,0.45]	chr16	643682	313	INTRON	INTRON	TANGO6	ENSG00000103047.8	ENST00000261778.2:ENST00000562000.5:ENST00000568361.5:ENST00000561931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	221	2	6.89704	7.117694999999999	7.33835	0.0036542	4.37892e-5	0.0389784	0.00149507
chr7	75113730	75113830	3394983	0	+	0.42	(0.419,0.45]	chr7	327805	8	INTRON	INTRON	GTF2IRD2B	ENSG00000174428.19	ENST00000651028.1:ENST00000620662.1:ENST00000472837.7:ENST00000619142.4:ENST00000418185.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	222	2	7.00677	7.117365	7.22796	0.00204103	1.1216e-4	0.0283511	0.00298349
chr19	6678706	6678789	7322504	0	-	0.433735	(0.419,0.45]	chr19	756371	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000599899.5:ENST00000695690.1:ENST00000695691.1:ENST00000695689.1:ENST00000695653.1:ENST00000695654.1:ENST00000602229.1:ENST00000599668.1:ENST00000601008.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	236	2	6.48603	7.11711	7.74819	0.00734278	1.32446e-5	0.0570055	6.28604e-4
chr15	20442239	20442339	6202469	0	-	0.56	(0.523,0.58]	chr15	610287	12	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000424611.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	214	2	6.94106	7.11566	7.29026	0.00183008	1.95191e-5	0.0266451	8.25524e-4
chr7	1070383	1070483	3526931	0	-	0.72	(0.58,1]	chr7	340585	152	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	210	2	6.93984	7.11562	7.2914	3.40674e-4	2.32442e-5	0.010549	9.36605e-4
chr1	45586279	45586378	115551	0	+	0.59596	(0.58,1]	chr1	14451	17	INTRON	INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000530840.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7:ENST00000629893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	208	2	7.02165	7.115225000000001	7.2088	4.11273e-4	1.76307e-5	0.0116246	7.68293e-4
chr17	6693162	6693262	6846002	0	-	0.43	(0.419,0.45]	chr17	693300	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SLC13A5	ENSG00000141485.17	ENST00000433363.7:ENST00000293800.10:ENST00000381074.8:ENST00000573648.5:ENST00000572727.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	681	2	6.29667	7.11442	7.93217	1.88168e-4	7.66539e-6	0.0077446	4.25718e-4
chr6	41058320	41058420	3130844	0	-	0.52	(0.485,0.523]	chr6	305368	56	INTRON	INTRON	OARD1	ENSG00000124596.17	ENST00000482853.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	472	2	5.82797	7.113935	8.3999	9.22391e-5	1.00762e-5	0.00533264	5.15349e-4
chrX	132454195	132454295	8111150	0	-	0.39	(0.36,0.39]	chrX	845460	135	INTRON	INTRON	MBNL3	ENSG00000076770.15	ENST00000370853.8:ENST00000370844.5:ENST00000436215.5:ENST00000421707.1	protein_coding	protein_coding	protein_coding	protein_coding	0	244	2	6.33445	7.113925	7.8934	0.00804615	6.97841e-6	0.0600099	3.99998e-4
chr14	91397439	91397539	6039146	0	-	0.5	(0.485,0.523]	chr14	592162	125	INTRON	INTRON	CCDC88C	ENSG00000015133.20	ENST00000389857.11:ENST00000554872.5:ENST00000553437.1:ENST00000389856.9:ENST00000553403.1:ENST00000554165.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	221	2	6.64355	7.1136099999999995	7.58367	0.00320229	8.23315e-6	0.0361639	4.47628e-4
chr7	111290792	111290892	3684972	0	-	0.33	(0.29,0.33]	chr7	354615	3269	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	215	2	6.84566	7.112465	7.37927	0.00190387	1.74949e-5	0.0273003	7.64358e-4
chr15	25406666	25406766	6205677	0	-	0.34	(0.33,0.36]	chr15	610793	2	SS5_PROX	SS5_PROX:INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000630607.2:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000628890.1:ENST00000625681.2:ENST00000626589.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	219	2	6.96563	7.112075	7.25852	0.00124585	8.91811e-5	0.0214712	0.00250881
chr22	35849283	35849383	7804031	0	-	0.45	(0.419,0.45]	chr22	817785	88	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000359369.8:ENST00000695807.1:ENST00000408983.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	221	2	7.00677	7.111655000000001	7.21654	0.00208302	1.1216e-4	0.0287557	0.00298349
chr1	246233423	246233523	703119	0	-	0.45	(0.419,0.45]	chr1	82422	398	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	229	2	6.59587	7.1115949999999994	7.62732	0.00611222	1.89098e-5	0.0517172	8.09334e-4
chr19	6229476	6229575	7321306	0	-	0.545455	(0.523,0.58]	chr19	756087	20	INTRON	INTRON	MLLT1	ENSG00000130382.9	ENST00000252674.9	protein_coding	protein_coding	protein_coding	protein_coding	0	215	2	7.01122	7.111395	7.21157	0.00107726	4.65929e-5	0.0197563	0.00156314
chr17	72560517	72560617	6963916	0	-	0.62	(0.58,1]	chr17	710389	261	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	206	2	6.91336	7.111245	7.30913	7.98131e-4	6.56269e-6	0.0167692	3.8256e-4
chr17	76547499	76547598	6977080	0	-	0.454545	(0.45,0.485]	chr17	712268	12	INTRON	INTRON	CYGB:ENSG00000267546	ENSG00000161544.10:ENSG00000267546.2	ENST00000589145.1:ENST00000589963.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	225	2	6.58155	7.111165	7.64078	0.00421879	9.04119e-6	0.0421633	4.78548e-4
chr2	233289353	233289453	1059543	0	+	0.47	(0.45,0.485]	chr2	115301	1	SS3_PROX	SS3_PROX:INTRON	ATG16L1	ENSG00000085978.22	ENST00000347464.9:ENST00000373525.9:ENST00000392021.7:ENST00000392017.9:ENST00000479942.5:ENST00000474148.5:ENST00000392020.8:ENST00000392018.1:ENST00000498620.5:ENST00000464645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	215	2	6.96076	7.1106300000000005	7.2605	0.00209187	2.93313e-5	0.0287557	0.00110673
chr3	136299648	136299746	1574575	0	+	0.336735	(0.33,0.36]	chr3	167002	12	INTRON	INTRON	PCCB	ENSG00000114054.14	ENST00000251654.9:ENST00000490504.5:ENST00000483687.5:ENST00000468777.5:ENST00000462637.5:ENST00000466072.5:ENST00000484181.5:ENST00000482086.5:ENST00000471595.5:ENST00000469217.5:ENST00000478469.5:ENST00000474833.5:ENST00000475214.5:ENST00000473073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	218	2	6.82773	7.11051	7.39329	0.0028048	2.52224e-5	0.0336304	9.94598e-4
chr6	10589313	10589413	2850440	0	+	0.45	(0.419,0.45]	chr6	278695	20	INTRON	INTRON	GCNT2	ENSG00000111846.20	ENST00000410107.5:ENST00000489225.5:ENST00000397423.7:ENST00000495262.7:ENST00000475577.5:ENST00000489819.5:ENST00000474518.1:ENST00000379597.7:ENST00000485764.1:ENST00000461400.1:ENST00000316170.9:ENST00000459872.1:ENST00000265012.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	219	2	7.07197	7.11032	7.14867	0.00269142	7.52409e-5	0.0329086	0.00222212
chr7	158915504	158915602	3523144	0	+	0.44898	(0.419,0.45]	chr7	340293	8	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	221	2	6.99178	7.109870000000001	7.22796	0.00204103	1.16955e-4	0.0283511	0.00308693
chr8	125001431	125001527	3914611	0	+	0.40625	(0.39,0.419]	chr8	373955	10	INTRON	INTRON	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10:ENST00000521232.1	protein_coding	protein_coding	protein_coding	protein_coding	0	245	2	6.47978	7.109674999999999	7.73957	6.54536e-4	4.14458e-4	0.0150543	0.00767522
chr1	17675284	17675384	54964	0	+	0.62	(0.58,1]	chr1	5603	103	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	428	2	6.12261	7.109525	8.09644	5.14219e-5	1.49015e-6	0.00397585	1.36384e-4
chr1	31578288	31578388	81027	0	+	0.41	(0.39,0.419]	chr1	9279	1	SS5_PROX	SS5_PROX:INTRON	LINC01226:TINAGL1	ENSG00000284543.1:ENSG00000142910.16	ENST00000639839.1:ENST00000640226.1:ENST00000457433.6:ENST00000271064.12:ENST00000461030.5:ENST00000478398.5:ENST00000481165.5:ENST00000537531.2:ENST00000468635.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	1	619	2	4.99872	7.109394999999999	9.22007	2.04553e-4	3.58329e-5	0.00460754	0.00330375
chr7	1937894	1937994	3529603	0	-	0.65	(0.58,1]	chr7	340962	6	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000450235.5:ENST00000437877.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	208	2	6.77258	7.109195	7.44581	0.00108768	4.06787e-6	0.0198535	2.73821e-4
chr18	13446022	13446120	7025036	0	+	0.489796	(0.485,0.523]	chr18	717583	18	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000610087.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	225	2	6.71888	7.108775	7.49867	5.99913e-4	1.19549e-4	0.0143535	0.00313373
chr6	81881345	81881445	3188765	0	-	0.38	(0.36,0.39]	chr6	309343	211	INTRON	INTRON	LINC02542	ENSG00000226453.3	ENST00000667666.1:ENST00000663543.1:ENST00000668303.1:ENST00000660637.1:ENST00000668266.1:ENST00000666226.1:ENST00000418567.2:ENST00000665153.1:ENST00000660534.2:ENST00000684960.1	lncRNA	lncRNA	lncRNA	lncRNA	0	231	2	6.68176	7.108029999999999	7.5343	9.32526e-4	2.3726e-4	0.0182629	0.0051158
chr10	18566661	18566761	4642395	0	-	0.43	(0.419,0.45]	chr10	443321	143	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	223	2	6.89842	7.10731	7.3162	0.00174277	1.51593e-4	0.0258726	0.00370696
chr18	79358653	79358753	7099872	0	+	0.65	(0.58,1]	chr18	722963	101	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000426216.6:ENST00000307671.12:ENST00000490210.6:ENST00000590477.5:ENST00000589951.5:ENST00000588921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	209	2	6.9229	7.107150000000001	7.2914	3.40674e-4	2.46059e-5	0.010549	9.771e-4
chr10	129560885	129560985	4613417	0	+	0.43	(0.419,0.45]	chr10	440949	239	INTRON	INTRON	MGMT	ENSG00000170430.10	ENST00000306010.8:ENST00000482653.1:ENST00000651593.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	224	2	6.86591	7.106925	7.34794	0.00164606	1.65832e-4	0.0250898	0.00396002
chr7	143386196	143386293	3510767	0	+	0.608247	(0.58,1]	chr7	338486	16	INTRON	INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	206	2	7.05311	7.10625	7.15939	4.60046e-4	1.5843e-5	0.0123493	7.12006e-4
chr9	5951028	5951128	4273669	0	-	0.51	(0.485,0.523]	chr9	408205	57	INTRON	INTRON	KIAA2026	ENSG00000183354.12	ENST00000399933.8:ENST00000381461.6:ENST00000540714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	221	2	6.79219	7.105845	7.4195	7.03986e-4	9.60927e-5	0.0156243	0.00264781
chr21	45476827	45476910	7631038	0	+	0.39759	(0.39,0.419]	chr21	797685	4	SS5_PROX	SS5_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	217	2	7.06714	7.10538	7.14362	0.00228675	6.51805e-5	0.0302327	0.00199309
chr16	1727154	1727253	6371207	0	+	0.585859	(0.58,1]	chr16	628837	21	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000685565.1:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	205	2	6.91336	7.104699999999999	7.29604	7.98131e-4	6.86847e-6	0.0167692	3.9491e-4
chr2	3296000	3296099	1081067	0	-	0.585859	(0.58,1]	chr2	117633	133	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	205	2	7.09515	7.104605	7.11406	5.31842e-4	1.2868e-5	0.0134466	6.14919e-4
chr3	51499943	51500015	1776519	0	-	0.597222	(0.58,1]	chr3	184541	2	UTR5	UTR5:EXON_MRNA	DCAF1	ENSG00000145041.16	ENST00000504652.5:ENST00000423656.5:ENST00000684031.1	protein_coding	protein_coding	protein_coding	protein_coding	1	429	2	5.99313	7.10459	8.21605	3.85543e-5	2.38232e-6	0.00344738	1.87577e-4
chr2	3295002	3295101	1081057	0	-	0.545455	(0.523,0.58]	chr2	117633	123	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	212	2	7.01022	7.104415	7.19861	0.0016001	2.60365e-5	0.0246878	0.00101533
chr17	72553234	72553334	6963843	0	-	0.55	(0.523,0.58]	chr17	710389	188	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	2	1265	2	6.27172	7.103925	7.93613	9.61724e-5	7.30546e-9	0.00548183	4.33542e-6
chr4	709260	709360	1993720	0	+	0.37	(0.36,0.39]	chr4	203088	29	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	221	2	6.72352	7.1033	7.48308	0.00411221	2.39075e-5	0.0414433	9.56905e-4
chr8	17765656	17765756	3946074	0	-	0.35	(0.33,0.36]	chr8	376990	71	INTRON	INTRON	MTUS1	ENSG00000129422.15	ENST00000381869.5:ENST00000693296.1:ENST00000262102.10:ENST00000523718.5:ENST00000518755.1:ENST00000518891.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	225	2	6.74775	7.10309	7.45843	8.46644e-4	1.66494e-4	0.0173017	0.00397356
chr6	170398968	170399067	3076569	0	+	0.434343	(0.419,0.45]	chr6	299192	30	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	5	3096	2	6.55251	7.102785	7.65306	4.75584e-5	7.57159e-9	0.00379612	4.38489e-6
chr22	35850182	35850282	7804040	0	-	0.48	(0.45,0.485]	chr22	817785	97	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000359369.8:ENST00000695807.1:ENST00000408983.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	218	2	6.89879	7.1019950000000005	7.3052	0.00108226	8.68871e-5	0.0198031	0.00246367
chr3	142061837	142061937	1931438	0	-	0.43	(0.419,0.45]	chr3	196276	73	INTRON	INTRON	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000467072.5:ENST00000487734.5:ENST00000464782.5:ENST00000488107.6:ENST00000475734.5:ENST00000494358.5:ENST00000467634.1:ENST00000495095.6:ENST00000476617.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	218	2	6.92537	7.10161	7.27785	0.00347877	5.20883e-5	0.0378956	0.00169273
chr5	1327910	1328009	2609094	0	-	0.535354	(0.523,0.58]	chr5	259719	16	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	223	2	6.53464	7.1011299999999995	7.66762	0.00395533	5.83386e-6	0.0406092	3.51962e-4
chr5	857072	857172	2607925	0	-	0.47	(0.45,0.485]	chr5	259417	61	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	0	245	2	6.23609	7.10064	7.96519	0.00778782	3.236e-6	0.0590114	2.31758e-4
chr1	1108463	1108562	380267	0	-	0.636364	(0.58,1]	chr1	42816	12	INTRON	INTRON	C1orf159	ENSG00000131591.18	ENST00000379339.5:ENST00000379325.7:ENST00000421241.7:ENST00000467751.5:ENST00000477196.5:ENST00000434641.5:ENST00000482816.5:ENST00000462097.5:ENST00000475119.5:ENST00000472741.5:ENST00000480643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	222	2	6.39965	7.10045	7.80125	0.00241374	1.14692e-6	0.0309229	1.13842e-4
chr11	484853	484952	4784654	0	+	0.626263	(0.58,1]	chr11	457913	44	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	222	2	6.39965	7.10045	7.80125	0.00241374	1.14692e-6	0.0309229	1.13842e-4
chr8	699896	699995	3932728	0	-	0.727273	(0.58,1]	chr8	376054	69	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000524138.5:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	204	2	7.01408	7.100435	7.18679	6.3791e-4	1.00244e-5	0.0148365	5.13591e-4
chr4	870125	870210	2178294	0	-	0.470588	(0.45,0.485]	chr4	220581	3	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	214	2	6.88956	7.10018	7.3108	0.00239127	2.51511e-5	0.0308863	9.92488e-4
chr8	38769493	38769593	3802250	0	+	0.47	(0.45,0.485]	chr8	365828	117	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	1264	2	7.00779	7.10013	7.19247	2.50004e-5	1.42725e-7	0.00286113	2.92318e-5
chr2	138571958	138572058	904600	0	+	0.42	(0.419,0.45]	chr2	101987	30	UTR3	UTR3:EXON_MRNA:INTRON	SPOPL:ENSG00000241772	ENSG00000144228.9:ENSG00000241772.2	ENST00000280098.9:ENST00000458007.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	493	2	5.84431	7.09914	8.35397	2.54646e-4	1.94372e-5	0.00904796	8.25524e-4
chr4	56437123	56437222	2046038	0	+	0.525253	(0.523,0.58]	chr4	209256	4	INTRON	INTRON	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000505164.5:ENST00000504188.1:ENST00000399688.7:ENST00000510584.1:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	463	2	5.86142	7.098825	8.33623	1.06923e-4	8.56829e-6	0.00577346	4.59307e-4
chr14	89604233	89604333	6030156	0	-	0.52	(0.485,0.523]	chr14	591496	1102	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000555353.5:ENST00000555855.5	protein_coding	protein_coding	protein_coding	protein_coding	0	227	2	6.64163	7.098470000000001	7.55531	5.34747e-4	1.50187e-4	0.0134768	0.0036849
chr11	68397910	68398010	4882941	0	+	0.54	(0.523,0.58]	chr11	470578	75	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	252	2	6.312	7.098255	7.88451	3.69994e-4	2.75108e-4	0.00943643	0.00704866
chr20	26010275	26010371	7452326	0	+	0.458333	(0.45,0.485]	chr20	775551	6	EXON_LNCRNA	EXON_LNCRNA	ENSG00000287569	ENSG00000287569.1	ENST00000668826.1	lncRNA	lncRNA	lncRNA	lncRNA	3	935	2	4.81313	7.0978200000000005	9.38251	6.00669e-4	3.065e-8	0.0143638	1.08598e-5
chr2	167956669	167956769	1306925	0	-	0.56	(0.523,0.58]	chr2	140174	7	INTRON	INTRON	STK39	ENSG00000198648.11	ENST00000487143.5:ENST00000355999.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	213	2	6.99575	7.09776	7.19977	0.00110271	4.88649e-5	0.020005	0.00161739
chr2	235803083	235803182	1065641	0	+	0.474747	(0.45,0.485]	chr2	115712	32	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	215	2	6.97875	7.096819999999999	7.21489	0.00128871	6.85584e-5	0.0219081	0.00207014
chr1	31580013	31580113	81047	0	+	0.51	(0.485,0.523]	chr1	9289	2	SS5_PROX	SS5_PROX:INTRON	LINC01226:TINAGL1	ENSG00000284543.1:ENSG00000142910.16	ENST00000639839.1:ENST00000640226.1:ENST00000457433.6:ENST00000271064.12:ENST00000461030.5:ENST00000478398.5:ENST00000481165.5:ENST00000537531.2:ENST00000468635.5:ENST00000498429.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	283	2	6.03396	7.09658	8.1592	8.35707e-4	1.53304e-4	0.012554	0.00689544
chr13	113614142	113614241	5659142	0	+	0.464646	(0.45,0.485]	chr13	555781	27	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	647	2	6.01858	7.09655	8.17452	1.91251e-4	1.4561e-6	0.00779591	1.34292e-4
chr18	74835613	74835713	7091633	0	+	0.47	(0.45,0.485]	chr18	722438	311	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	218	2	6.86552	7.096220000000001	7.32692	0.00103756	9.58344e-5	0.019365	0.00264329
chr1	234474203	234474302	688617	0	-	0.484848	(0.45,0.485]	chr1	81056	10	INTRON	INTRON	TARBP1	ENSG00000059588.10	ENST00000040877.2	protein_coding	protein_coding	protein_coding	protein_coding	0	214	2	7.02468	7.0961	7.16752	0.0014116	5.97847e-5	0.0229261	0.00186524
chr16	57376872	57376971	6466033	0	+	0.444444	(0.419,0.45]	chr16	641365	39	INTRON	INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1	protein_coding	protein_coding	protein_coding	protein_coding	0	218	2	6.85347	7.09591	7.33835	0.00394037	4.37892e-5	0.0406053	0.00149507
chr17	82723485	82723585	6818120	0	+	0.48	(0.45,0.485]	chr17	689151	2	INTRON	INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5:ENST00000571482.2:ENST00000576363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	222	2	6.76085	7.095865	7.43088	8.47151e-4	1.3016e-4	0.0173017	0.00332369
chr10	79157257	79157356	4532929	0	+	0.535354	(0.523,0.58]	chr10	432432	171	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	213	2	6.9801	7.095835	7.21157	0.00107726	5.12704e-5	0.0197563	0.00167326
chr8	9772723	9772823	3754905	0	+	0.37	(0.36,0.39]	chr8	360887	3	SS5_PROX	SS5_PROX:INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	0	224	2	6.77281	7.0957550000000005	7.4187	0.00115896	1.84422e-4	0.0205897	0.00427863
chr16	81679824	81679924	6510109	0	+	0.59	(0.58,1]	chr16	645979	8	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	0	204	2	7.06859	7.09489	7.12119	5.01526e-4	1.50295e-5	0.0129939	6.85908e-4
chr19	40090649	40090749	7379237	0	-	0.6	(0.58,1]	chr19	765591	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF780A	ENSG00000197782.15	ENST00000450241.6:ENST00000414720.6:ENST00000455521.5:ENST00000340963.9:ENST00000683561.1:ENST00000595687.6:ENST00000595773.5:ENST00000601688.5:ENST00000599972.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	0	209	2	6.85311	7.094835	7.33656	3.07185e-4	3.10807e-5	0.00996904	0.00115612
chr13	45414622	45414721	5703037	0	-	0.444444	(0.419,0.45]	chr13	559528	23	INTRON	INTRON	SLC25A30	ENSG00000174032.17	ENST00000519676.6:ENST00000539591.5:ENST00000310862.11:ENST00000519547.5:ENST00000522438.1:ENST00000463262.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	219	2	6.96133	7.094645	7.22796	0.00204103	1.27315e-4	0.0283511	0.00327695
chr3	42138869	42138969	1450917	0	+	0.5	(0.485,0.523]	chr3	154868	129	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2:ENST00000484786.5:ENST00000327628.10	protein_coding	protein_coding	protein_coding	protein_coding	0	218	2	6.80995	7.09409	7.37823	7.64953e-4	9.11162e-5	0.0163688	0.00255001
chr4	6665504	6665603	2186192	0	-	0.494949	(0.485,0.523]	chr4	221877	31	INTRON	INTRON	LINC02482	ENSG00000251580.3	ENST00000647523.2:ENST00000667300.1	lncRNA	lncRNA	lncRNA	lncRNA	0	211	2	7.07664	7.094075	7.11151	0.00139256	3.63944e-5	0.022808	0.00129856
chr7	79327668	79327768	3625273	0	-	0.36	(0.33,0.36]	chr7	349228	3189	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000628997.1:ENST00000636424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	474	2	6.12626	7.093235	8.06021	2.56926e-4	5.91667e-6	0.00907441	3.55782e-4
chr13	113056900	113056999	5656206	0	+	0.585859	(0.58,1]	chr13	555189	21	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	1	514	2	5.99719	7.0930599999999995	8.18893	6.80323e-5	2.79472e-7	0.00460163	4.50012e-5
chr9	133853791	133853890	4428936	0	-	0.606061	(0.58,1]	chr9	423304	191	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	0	205	2	6.98948	7.093045	7.19661	4.22825e-4	1.96603e-5	0.011772	8.29491e-4
chr6	147865204	147865304	3030821	0	+	0.36	(0.33,0.36]	chr6	295875	1278	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	0	222	2	6.59729	7.09252	7.58775	0.00427093	1.40019e-5	0.0423709	6.49964e-4
chr2	160465826	160465926	1293209	0	-	0.44	(0.419,0.45]	chr2	138809	330	INTRON	INTRON	RBMS1	ENSG00000153250.21	ENST00000348849.8:ENST00000474820.5:ENST00000491781.5:ENST00000477486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	2235	2	6.3889	7.092219999999999	7.79554	9.98474e-6	4.16951e-7	0.00187093	5.88447e-5
chr12	132530976	132531076	5352925	0	+	0.72	(0.58,1]	chr12	523670	26	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	204	2	7.03746	7.092115	7.14677	4.73371e-4	1.67087e-5	0.0125708	7.38685e-4
chr14	89306317	89306417	6027164	0	-	0.49	(0.485,0.523]	chr14	591449	214	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	569	2	5.96663	7.09178	8.21693	1.82327e-4	1.04195e-6	0.00759181	1.07093e-4
chr1	110962030	110962129	560814	0	-	0.353535	(0.33,0.36]	chr1	64299	89	INTRON	INTRON	LRIF1	ENSG00000121931.16	ENST00000369763.5:ENST00000485275.2	protein_coding	protein_coding	protein_coding	protein_coding	0	217	2	6.90203	7.091475	7.28092	0.00119342	1.07164e-4	0.020937	0.00288103
chr16	1739209	1739307	6371331	0	+	0.591837	(0.58,1]	chr16	628851	38	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	430	2	6.40874	7.0914649999999995	7.77419	1.10803e-4	5.22329e-7	0.00587267	6.8108e-5
chr17	77301369	77301468	6803364	0	+	0.414141	(0.39,0.419]	chr17	686716	61	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	232	2	6.60396	7.09122	7.57848	8.87861e-4	2.96245e-4	0.0177608	0.00602194
chr10	61902613	61902713	4490586	0	+	0.41	(0.39,0.419]	chr10	429657	2	SS5_PROX	SS5_PROX:INTRON	ARID5B	ENSG00000150347.17	ENST00000644638.1:ENST00000681100.1:ENST00000279873.12	protein_coding	protein_coding	protein_coding	protein_coding	0	224	2	6.75448	7.0908999999999995	7.42732	0.00117867	1.95875e-4	0.020761	0.00445752
chr1	213990580	213990680	339381	0	+	0.5	(0.485,0.523]	chr1	38089	4	INTRON	INTRON	PROX1	ENSG00000117707.16	ENST00000471129.1:ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2:ENST00000607425.1	protein_coding	protein_coding	protein_coding	protein_coding	1	461	2	5.87197	7.090725000000001	8.30948	1.11699e-4	8.73502e-6	0.00589673	4.66014e-4
chr2	239084342	239084442	1389518	0	-	0.55	(0.523,0.58]	chr2	148604	1	SS3_PROX	SS3_PROX:INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000487617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	210	2	7.02366	7.09057	7.15748	0.00155872	2.96091e-5	0.0243306	0.00111477
chr12	124961121	124961220	5537766	0	-	0.555556	(0.523,0.58]	chr12	546181	3	INTRON	INTRON	DHX37	ENSG00000150990.9	ENST00000308736.7:ENST00000544745.2:ENST00000679875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	227	2	6.41733	7.089725	7.76212	0.00490887	4.29035e-6	0.0457614	2.82813e-4
chr1	93459896	93459996	185731	0	+	0.4	(0.39,0.419]	chr1	20160	112	INTRON	INTRON	FNBP1L	ENSG00000137942.18	ENST00000271234.13:ENST00000260506.12:ENST00000370253.6	protein_coding	protein_coding	protein_coding	protein_coding	0	247	2	6.39063	7.08877	7.78691	5.98107e-4	5.25726e-4	0.0143535	0.00903907
chr16	89430555	89430655	6661139	0	-	0.51	(0.485,0.523]	chr16	666747	118	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	470	2	6.4235	7.0887150000000005	7.75393	3.56163e-4	1.4172e-6	0.0107631	1.31693e-4
chr1	32649602	32649702	438829	0	-	0.43	(0.419,0.45]	chr1	52320	145	INTRON	INTRON	ZBTB8OS	ENSG00000176261.16	ENST00000341885.6:ENST00000468695.6:ENST00000492007.6:ENST00000373506.8:ENST00000436661.6:ENST00000473294.7:ENST00000373501.6:ENST00000476493.6:ENST00000465588.2:ENST00000483138.5:ENST00000479075.6:ENST00000466361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	221	2	6.84938	7.08812	7.32686	0.00170971	1.73559e-4	0.025659	0.0040962
chr1	1031020	1031120	1025	0	+	0.54	(0.523,0.58]	chr1	166	82	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	1	563	2	5.91462	7.087289999999999	8.25996	2.05393e-4	8.27326e-7	0.00809983	9.26925e-5
chr4	183262716	183262814	2169042	0	+	0.591837	(0.58,1]	chr4	219558	8	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000448232.6:ENST00000513834.5:ENST00000427431.5:ENST00000438543.5:ENST00000504005.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	238	2	6.34387	7.0871949999999995	7.83052	1.61506e-4	9.69786e-5	0.00549965	0.00387712
chr7	47475107	47475207	3588559	0	-	0.51	(0.485,0.523]	chr7	346123	220	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	462	2	5.8205	7.08662	8.35274	1.01933e-4	1.03229e-5	0.00563933	5.25841e-4
chr7	92625275	92625375	3636847	0	-	0.37	(0.36,0.39]	chr7	350296	18	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	0	214	2	6.9486	7.086205	7.22381	0.00275221	5.11391e-5	0.0332418	0.00167326
chr2	101729031	101729131	860946	0	+	0.45	(0.419,0.45]	chr2	97528	301	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	1	595	2	5.6911	7.085889999999999	8.48068	5.98225e-4	1.45712e-6	0.0143535	1.34313e-4
chr7	112115514	112115614	3691663	0	-	0.54	(0.523,0.58]	chr7	354969	1110	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	211	2	6.99575	7.08582	7.17589	0.00115604	4.88649e-5	0.0205679	0.00161739
chr7	139704543	139704643	3723191	0	-	0.45	(0.419,0.45]	chr7	357498	725	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	1	593	2	5.63273	7.08564	8.53855	6.67853e-4	1.22028e-6	0.0152232	1.19067e-4
chr17	29083430	29083528	6875934	0	-	0.438776	(0.419,0.45]	chr17	697789	6	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000529578.5:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000546105.5:ENST00000527312.5:ENST00000531438.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	219	2	6.89842	7.085585	7.27275	0.00188399	1.51593e-4	0.0271069	0.00370696
chr13	51802149	51802248	5716317	0	-	0.464646	(0.45,0.485]	chr13	560865	21	INTRON	INTRON	DHRS12	ENSG00000102796.12	ENST00000444610.8:ENST00000650833.1:ENST00000682342.1:ENST00000218981.5:ENST00000280056.6:ENST00000490949.5:ENST00000497151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	219	2	6.77883	7.08451	7.39019	9.17281e-4	1.23522e-4	0.0180726	0.00321265
chr3	73004840	73004940	1502808	0	+	0.45	(0.419,0.45]	chr3	160766	63	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000495566.1:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	653	2	5.461	7.0845	8.708	1.29412e-4	1.51427e-5	0.00631463	6.8895e-4
chr8	143607396	143607478	4097296	0	-	0.487805	(0.485,0.523]	chr8	389389	3	SS3_PROX	SS3_PROX:INTRON	PYCR3	ENSG00000104524.14	ENST00000495276.6:ENST00000220966.10:ENST00000447926.6:ENST00000433751.5:ENST00000377579.7:ENST00000462036.5:ENST00000482616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	216	2	6.62603	7.0839	7.54177	0.00330946	9.4141e-6	0.0368376	4.92849e-4
chr2	3295800	3295900	1081065	0	-	0.6	(0.58,1]	chr2	117633	131	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	205	2	6.9229	7.08384	7.24478	3.78937e-4	2.46059e-5	0.011147	9.771e-4
chr2	138420084	138420184	1277669	0	-	0.45	(0.419,0.45]	chr2	137676	12	INTRON	INTRON	SPOPL-DT	ENSG00000228043.5	ENST00000431985.5	lncRNA	lncRNA	lncRNA	lncRNA	0	232	2	6.42781	7.083525	7.73924	0.0080847	1.35996e-5	0.0602118	6.39223e-4
chr16	72974531	72974631	6627153	0	-	0.54	(0.523,0.58]	chr16	663547	8	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2:ENST00000397992.5:ENST00000268489.10	protein_coding	protein_coding	protein_coding	protein_coding	0	212	2	6.93213	7.0835	7.23487	0.00102861	5.9384e-5	0.0192522	0.00185705
chr22	50424312	50424412	7754486	0	+	0.62	(0.58,1]	chr22	812542	3	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9:ENST00000401672.7:ENST00000427222.2	protein_coding	protein_coding	protein_coding	protein_coding	2	569	2	5.45058	7.083495	8.71641	1.13869e-5	3.10162e-6	0.00197163	2.2511e-4
chr1	174003391	174003491	620760	0	-	0.49	(0.485,0.523]	chr1	73467	99	INTRON	INTRON	RC3H1	ENSG00000135870.12	ENST00000367696.7	protein_coding	protein_coding	protein_coding	protein_coding	1	455	2	5.98315	7.083255	8.18336	1.45715e-4	6.07904e-6	0.00674114	3.61142e-4
chr17	42201540	42201638	6903094	0	-	0.44898	(0.419,0.45]	chr17	702115	25	UTR3	UTR3:EXON_MRNA	STAT5B	ENSG00000173757.10	ENST00000293328.8	protein_coding	protein_coding	protein_coding	protein_coding	2	758	2	4.75802	7.0830400000000004	9.40806	1.20746e-4	3.3268e-5	0.00320976	0.00316166
chr8	630337	630437	3932023	0	-	0.58	(0.523,0.58]	chr8	376005	27	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	210	2	7.02653	7.0829249999999995	7.13932	0.00124255	4.44459e-5	0.0214257	0.00150854
chr7	95417682	95417781	3641294	0	-	0.444444	(0.419,0.45]	chr7	350622	10	INTRON	INTRON	PON2	ENSG00000105854.13	ENST00000222572.8:ENST00000633531.1:ENST00000455123.5:ENST00000433091.6:ENST00000633192.1:ENST00000446142.5:ENST00000469926.5:ENST00000491069.5:ENST00000490778.5:ENST00000632034.1:ENST00000493290.5:ENST00000478801.5:ENST00000460873.5:ENST00000493469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	215	2	7.07197	7.08277	7.09357	0.00269142	8.791e-5	0.0329086	0.00248329
chr12	114677956	114678056	5510638	0	-	0.33	(0.29,0.33]	chr12	542612	3	SS3_PROX	SS3_PROX:INTRON	TBX3	ENSG00000135111.16	ENST00000349155.7:ENST00000257566.7:ENST00000548503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	210	2	6.84566	7.08221	7.31876	0.00190387	2.11275e-5	0.0273003	8.7396e-4
chr13	112972943	112973042	5655350	0	+	0.636364	(0.58,1]	chr13	555120	31	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	1	467	2	5.45153	7.081835	8.71214	1.62548e-5	1.15072e-5	0.00197933	7.25583e-4
chr21	43958534	43958634	7625369	0	+	0.51	(0.485,0.523]	chr21	796924	29	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000448845.1:ENST00000422850.5:ENST00000546158.1	protein_coding	protein_coding	protein_coding	protein_coding	0	210	2	7.02291	7.08133	7.13975	0.00122997	4.77916e-5	0.0212869	0.00159602
chr22	26451958	26452056	7772689	0	-	0.591837	(0.58,1]	chr22	815279	12	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	HPS4	ENSG00000100099.21	ENST00000519774.5:ENST00000493455.6:ENST00000398145.7:ENST00000491142.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	203	2	6.98948	7.080695	7.17191	4.47193e-4	1.96603e-5	0.0121697	8.29491e-4
chr6	35493701	35493800	3125632	0	-	0.585859	(0.58,1]	chr6	304825	66	INTRON	INTRON	TEAD3	ENSG00000007866.22	ENST00000338863.13:ENST00000402886.9:ENST00000639578.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	207	2	6.63475	7.08062	7.52649	0.00146621	3.06007e-6	0.023492	2.22941e-4
chr7	138508504	138508604	3502486	0	+	0.38	(0.36,0.39]	chr7	337502	37	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	213	2	6.9486	7.07972	7.21084	0.00275221	5.30999e-5	0.0332418	0.00171796
chr5	107999432	107999532	2735977	0	-	0.35	(0.33,0.36]	chr5	268845	1179	INTRON	INTRON	FBXL17	ENSG00000145743.18	ENST00000542267.7:ENST00000496714.2	protein_coding	protein_coding	protein_coding	protein_coding	0	218	2	6.80103	7.07885	7.35667	0.00103133	1.4311e-4	0.019287	0.00355964
chr3	48087572	48087672	1765941	0	-	0.52	(0.485,0.523]	chr3	182011	713	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	0	209	2	7.06789	7.07869	7.08949	0.00135789	4.163e-5	0.0224546	0.00144246
chr10	74160631	74160731	4511774	0	+	0.56	(0.523,0.58]	chr10	431901	89	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000478611.2:ENST00000673352.1	protein_coding	protein_coding	protein_coding	protein_coding	1	460	2	5.77841	7.07855	8.37869	9.77425e-5	1.12313e-5	0.0055289	5.58392e-4
chr15	22964407	22964507	6204156	0	-	0.68	(0.58,1]	chr15	610573	160	INTRON	INTRON	CYFIP1	ENSG00000273749.5	ENST00000617928.5:ENST00000610365.4:ENST00000613006.4:ENST00000611832.4:ENST00000619037.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	201	2	7.02791	7.078405	7.1289	6.18479e-4	1.22303e-5	0.0145945	5.9245e-4
chr1	156211022	156211120	251501	0	+	0.397959	(0.39,0.419]	chr1	29578	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SLC25A44	ENSG00000160785.14	ENST00000423538.6:ENST00000684582.1:ENST00000359511.5:ENST00000469537.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	220	2	6.62127	7.07836	7.53545	0.00504817	2.0713e-5	0.0465263	8.61481e-4
chr7	74500000	74500100	3391827	0	+	0.56	(0.523,0.58]	chr7	327343	455	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	1	452	2	6.15861	7.078215	7.99782	2.17448e-4	3.21757e-6	0.00834646	2.30832e-4
chr2	3296998	3297097	1081077	0	-	0.565657	(0.523,0.58]	chr2	117633	143	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	209	2	6.85345	7.07817	7.30289	0.00216679	1.87561e-5	0.0292299	8.04567e-4
chr7	140144683	140144783	3724977	0	-	0.53	(0.523,0.58]	chr7	357714	51	INTRON	INTRON	KDM7A	ENSG00000006459.11	ENST00000397560.7	protein_coding	protein_coding	protein_coding	protein_coding	0	216	2	6.77782	7.0778099999999995	7.3778	7.7332e-4	9.47932e-5	0.0164417	0.00262417
chr7	102047541	102047641	3436290	0	+	0.46	(0.45,0.485]	chr7	332534	190	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	214	2	6.70281	7.07739	7.45197	0.00338129	1.6284e-5	0.0371948	7.25583e-4
chr2	3295900	3296000	1081066	0	-	0.59	(0.58,1]	chr2	117633	132	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	201	2	6.89838	7.07721	7.25604	8.25028e-4	7.89156e-6	0.0170688	4.34116e-4
chr9	95003116	95003216	4190024	0	+	0.47	(0.45,0.485]	chr9	398123	233	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000297979.9:ENST00000424143.5:ENST00000462125.5:ENST00000479161.5:ENST00000451893.5:ENST00000460573.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	210	2	7.0418	7.07709	7.11238	0.00179449	4.5955e-5	0.0262815	0.00154731
chr7	208198	208297	3305736	0	+	0.525253	(0.523,0.58]	chr7	320155	108	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6:ENST00000477004.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	208	2	6.96913	7.0770800000000005	7.18503	0.0017332	2.7167e-5	0.0257605	0.00104767
chr10	79157356	79157456	4532930	0	+	0.54	(0.523,0.58]	chr10	432432	172	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	221	2	6.66495	7.07676	7.48857	6.18664e-4	1.32802e-4	0.0145945	0.00337193
chr10	46806609	46806708	4484749	0	+	0.575758	(0.523,0.58]	chr10	428921	43	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000688259.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	605	2	5.51232	7.076665	8.64101	5.59634e-5	5.7818e-6	0.00415752	3.50933e-4
chr4	709160	709260	1993719	0	+	0.44	(0.419,0.45]	chr4	203088	28	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	221	2	6.61339	7.075335	7.53728	0.0059347	2.46099e-5	0.0506158	9.771e-4
chr10	132756372	132756472	4619036	0	+	0.43	(0.419,0.45]	chr10	441201	25	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	0	218	2	6.69793	7.07508	7.45223	0.00514373	3.15167e-5	0.0471181	0.00116717
chr7	76996629	76996729	3398766	0	+	0.64	(0.58,1]	chr7	328286	59	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	218	2	6.57822	7.075065	7.57191	1.78161e-4	7.66421e-5	0.00750602	0.00224403
chr1	45595173	45595273	115644	0	+	0.49	(0.485,0.523]	chr1	14471	4	SS5_PROX	SS5_PROX:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000530840.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	208	2	7.02409	7.07493	7.12577	0.00154346	3.48268e-5	0.02427	0.00126017
chr17	80893369	80893448	6812411	0	+	0.56962	(0.523,0.58]	chr17	687926	1	SS3_PROX	SS3_PROX:INTRON	RPTOR	ENSG00000141564.15	ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	455	2	6.27879	7.0742449999999995	7.8697	2.83668e-4	2.15606e-6	0.00957277	1.75607e-4
chr7	208297	208397	3305737	0	+	0.51	(0.485,0.523]	chr7	320155	109	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6:ENST00000477004.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	208	2	7.05061	7.073865	7.09712	0.00146547	3.80472e-5	0.023492	0.00134128
chr13	77326273	77326373	5734521	0	-	0.53	(0.523,0.58]	chr13	562331	4	SS5_PROX	SS5_PROX:INTRON	MYCBP2	ENSG00000005810.20	ENST00000683823.1:ENST00000684354.1:ENST00000682321.1:ENST00000695079.1:ENST00000683697.1:ENST00000357337.11:ENST00000544440.7:ENST00000695080.1:ENST00000695081.1:ENST00000695090.1:ENST00000695091.1:ENST00000695094.1:ENST00000695095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	208	2	7.07151	7.07386	7.07621	0.00140655	3.86786e-5	0.0229261	0.00135841
chr5	71643991	71644087	2447283	0	+	0.520833	(0.485,0.523]	chr5	244334	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MCCC2	ENSG00000131844.17	ENST00000505787.8:ENST00000682499.1:ENST00000682214.1:ENST00000682045.1:ENST00000683789.1:ENST00000681968.1:ENST00000512218.6:ENST00000682541.1:ENST00000682727.1:ENST00000683098.1:ENST00000683258.1:ENST00000684254.1:ENST00000683882.1:ENST00000684024.1:ENST00000683403.1:ENST00000682687.1:ENST00000682876.1:ENST00000683429.1:ENST00000340941.11:ENST00000505435.4:ENST00000683339.1:ENST00000683847.1:ENST00000684530.1:ENST00000684310.1:ENST00000509539.3:ENST00000681991.1:ENST00000682667.1:ENST00000684686.1:ENST00000684474.1:ENST00000682231.1:ENST00000682640.1:ENST00000682438.1:ENST00000684132.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	209	2	6.82345	7.073825	7.3242	0.00227572	1.87601e-5	0.0301405	8.04567e-4
chr13	97339126	97339225	5631975	0	+	0.434343	(0.419,0.45]	chr13	553188	43	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	1792	2	6.90758	7.073515	7.23945	5.74017e-5	6.05273e-8	0.00421737	1.67471e-5
chr22	31624623	31624714	7788311	0	-	0.582418	(0.58,1]	chr22	817184	4	INTRON	INTRON	PISD	ENSG00000241878.12	ENST00000460723.5:ENST00000439502.7:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5:ENST00000474017.5:ENST00000478893.5:ENST00000491342.1:ENST00000422020.5:ENST00000442379.1:ENST00000429683.1:ENST00000431201.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	426	2	5.82574	7.073315	8.32089	2.99167e-5	4.34614e-6	0.003085	2.84901e-4
chr1	225639697	225639797	673872	0	-	0.46	(0.45,0.485]	chr1	79189	596	INTRON	INTRON	ENAH	ENSG00000154380.19	ENST00000366843.7:ENST00000366844.7:ENST00000635051.1:ENST00000284563.7	protein_coding	protein_coding	protein_coding	protein_coding	0	212	2	6.93131	7.0731	7.21489	0.00128871	7.8924e-5	0.0219081	0.0022885
chrX	153338702	153338802	7960564	0	+	0.46	(0.45,0.485]	chrX	833135	16	INTRON	INTRON	ZNF275	ENSG00000063587.15	ENST00000370249.3:ENST00000650114.2:ENST00000370251.3	protein_coding	protein_coding	protein_coding	protein_coding	0	210	2	7.03968	7.072855	7.10603	0.00158793	5.71642e-5	0.0245893	0.00180869
chr7	74528934	74529033	3392123	0	+	0.515152	(0.485,0.523]	chr7	327389	44	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6:ENST00000476977.5:ENST00000489094.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	214	2	6.80995	7.072845	7.33574	8.33022e-4	9.11162e-5	0.0171427	0.00255001
chr2	3221839	3221939	1080319	0	-	0.48	(0.45,0.485]	chr2	117609	72	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000482570.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	230	2	6.34655	7.07274	7.79893	0.00642055	5.4923e-6	0.0529785	3.37015e-4
chr1	1029528	1029627	1010	0	+	0.606061	(0.58,1]	chr1	166	67	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	200	2	6.94286	7.071885	7.20091	7.47593e-4	9.5483e-6	0.0161372	4.9724e-4
chr18	13445045	13445143	7025026	0	+	0.561224	(0.523,0.58]	chr18	717583	8	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000610087.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	221	2	6.64525	7.07174	7.49823	6.06692e-4	1.40789e-4	0.0144497	0.00351181
chr7	55067939	55068039	3372035	0	+	0.45	(0.419,0.45]	chr7	325289	240	INTRON	INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000463948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	671	2	5.15784	7.0715900000000005	8.98534	7.5763e-5	3.74776e-5	0.00485974	0.00132426
chr10	14558101	14558201	4633238	0	-	0.55	(0.523,0.58]	chr10	442809	13	INTRON	INTRON	FAM107B	ENSG00000065809.14	ENST00000181796.7:ENST00000622567.4:ENST00000468747.5:ENST00000378467.8:ENST00000487335.5:ENST00000378465.7:ENST00000378458.6:ENST00000378462.5:ENST00000479731.5:ENST00000468492.5:ENST00000452706.6:ENST00000488576.5:ENST00000442012.5:ENST00000482277.5:ENST00000472095.5:ENST00000471815.5:ENST00000464952.5:ENST00000495292.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	214	2	6.60786	7.071294999999999	7.53473	0.00345115	8.95943e-6	0.037649	4.75569e-4
chrX	2382760	2382860	7967671	0	-	0.44	(0.419,0.45]	chrX	834355	444	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	213	2	6.96685	7.071149999999999	7.17545	0.00323624	6.97411e-5	0.0363264	0.00209831
chr4	128859233	128859332	2132080	0	+	0.444444	(0.419,0.45]	chr4	216567	14	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	0	214	2	6.83865	7.070505000000001	7.30236	0.00404244	4.85572e-5	0.0412991	0.00161039
chr17	72553134	72553234	6963842	0	-	0.37	(0.36,0.39]	chr17	710389	187	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	508	2	6.55081	7.069805000000001	7.5888	8.41206e-4	1.90377e-6	0.0172456	1.61236e-4
chr22	46639456	46639555	7744572	0	+	0.525253	(0.523,0.58]	chr22	812052	11	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	0	207	2	7.01022	7.069805000000001	7.12939	0.0016001	3.23178e-5	0.0246878	0.00118877
chrX	316325	316413	7964859	0	-	0.556818	(0.523,0.58]	chrX	834136	7	INTRON	INTRON	GTPBP6	ENSG00000178605.13	ENST00000326153.9	protein_coding	protein_coding	protein_coding	protein_coding	0	210	2	6.72769	7.06977	7.41185	0.00275419	1.32752e-5	0.0332418	6.28604e-4
chr1	112706352	112706427	563034	0	-	0.44	(0.419,0.45]	chr1	64623	1	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	RHOC	ENSG00000155366.17	ENST00000369633.6:ENST00000369642.7:ENST00000339083.12:ENST00000285735.6:ENST00000468093.5:ENST00000369638.6:ENST00000369637.5:ENST00000369636.6:ENST00000484280.6:ENST00000369632.6:ENST00000425265.6:ENST00000436685.6:ENST00000528831.5:ENST00000484054.3:ENST00000478447.1:ENST00000527563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	213	2	7.05924	7.069355	7.07947	0.00275242	9.14728e-5	0.0332418	0.00255616
chr9	135836465	135836565	4431111	0	-	0.51	(0.485,0.523]	chr9	423507	85	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	208	2	6.83875	7.0690100000000005	7.29927	0.00220993	2.02879e-5	0.0295736	8.47843e-4
chr17	80561974	80562074	6809072	0	+	0.45	(0.419,0.45]	chr17	687806	158	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	588	2	5.38867	7.06898	8.74929	0.00105492	6.377e-7	0.0195031	7.82889e-5
chr19	16853546	16853642	7217906	0	+	0.510417	(0.485,0.523]	chr19	737637	4	SS5_PROX	SS5_PROX:INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000596802.5:ENST00000596638.1	protein_coding	protein_coding	protein_coding	protein_coding	0	212	2	6.66087	7.068705	7.47654	0.00309962	1.15894e-5	0.0355173	5.71291e-4
chr14	93313630	93313730	6044551	0	-	0.35	(0.33,0.36]	chr14	592822	171	INTRON	INTRON	BTBD7	ENSG00000011114.15	ENST00000334746.10:ENST00000554565.5:ENST00000298896.7:ENST00000554968.1	protein_coding	protein_coding	protein_coding	protein_coding	0	210	2	6.90185	7.06818	7.23451	0.00244473	4.05272e-5	0.0311837	0.00140773
chr3	71413359	71413459	1829582	0	-	0.4	(0.39,0.419]	chr3	188242	527	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000649145.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	214	2	6.75426	7.06813	7.382	0.00400086	3.25839e-5	0.0409634	0.00119745
chr10	34727907	34728007	4670937	0	-	0.5	(0.485,0.523]	chr10	445543	311	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	207	2	7.02409	7.0678	7.11151	0.00154346	3.63944e-5	0.02427	0.00129856
chr17	29273517	29273617	6877157	0	-	0.36	(0.33,0.36]	chr17	698051	56	INTRON	INTRON	NUFIP2	ENSG00000108256.9	ENST00000225388.9:ENST00000579665.1	protein_coding	protein_coding	protein_coding	protein_coding	0	212	2	6.93418	7.06757	7.20096	0.00139094	9.76753e-5	0.022808	0.00268525
chr7	143385519	143385615	3510760	0	+	0.4375	(0.419,0.45]	chr7	338486	9	INTRON	INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	214	2	6.80854	7.067495	7.32645	0.00425752	4.53126e-5	0.0422596	0.00153182
chr8	143322644	143322739	4095554	0	-	0.684211	(0.58,1]	chr8	389125	9	INTRON	INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	208	2	6.5414	7.066815	7.59223	0.00179018	2.42364e-6	0.0262802	1.89851e-4
chr5	175923363	175923463	2814519	0	-	0.49	(0.485,0.523]	chr5	275558	48	INTRON	INTRON	THOC3	ENSG00000051596.10	ENST00000432305.6	protein_coding	protein_coding	protein_coding	protein_coding	0	207	2	6.89835	7.066665	7.23498	0.00197036	2.48079e-5	0.0278418	9.81945e-4
chr5	882645	882715	2608202	0	-	0.542857	(0.523,0.58]	chr5	259474	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	548	2	5.37909	7.066645	8.7542	6.27649e-4	1.55715e-7	0.0147128	3.07667e-5
chr9	135838959	135839059	4431136	0	-	0.45	(0.419,0.45]	chr9	423507	110	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	220	2	6.59587	7.066575	7.53728	0.00611222	2.46099e-5	0.0517172	9.771e-4
chr20	36858275	36858375	7557084	0	-	0.48	(0.45,0.485]	chr20	789155	185	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	2	1220	2	6.85831	7.066330000000001	7.27435	3.42885e-5	1.08548e-7	0.00325532	2.47022e-5
chr8	70326375	70326475	3994478	0	-	0.39	(0.36,0.39]	chr8	382245	292	INTRON	INTRON	NCOA2	ENSG00000140396.13	ENST00000452400.7:ENST00000518287.6:ENST00000520416.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	211	2	7.02964	7.066155	7.10267	0.00237667	7.25586e-5	0.0307601	0.00216169
chr7	103957554	103957654	3663374	0	-	0.54	(0.523,0.58]	chr7	353511	400	INTRON	INTRON	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1:ENST00000681401.1:ENST00000679689.1:ENST00000681182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	237	2	6.19774	7.066045	7.93435	0.0072907	2.43952e-6	0.0567247	1.90739e-4
chr2	161217636	161217735	938683	0	+	0.363636	(0.36,0.39]	chr2	103669	8	INTRON	INTRON	TANK	ENSG00000136560.14	ENST00000259075.6:ENST00000432002.5:ENST00000429217.5:ENST00000406287.5:ENST00000402568.5:ENST00000457887.5:ENST00000392749.7:ENST00000432692.6:ENST00000405852.5:ENST00000456358.5:ENST00000468831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	211	2	7.04271	7.065635	7.08856	0.00232085	7.55582e-5	0.030354	0.00222665
chrX	2383460	2383560	7967678	0	-	0.41	(0.39,0.419]	chrX	834355	451	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	211	2	6.94722	7.065595	7.18397	0.00283905	5.80168e-5	0.033773	0.00182637
chr8	639585	639684	3932116	0	-	0.555556	(0.523,0.58]	chr8	376009	16	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1:ENST00000523709.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	207	2	6.85345	7.065485	7.27752	0.00216679	2.03194e-5	0.0292299	8.47843e-4
chr9	105276579	105276679	4205915	0	+	0.5	(0.485,0.523]	chr9	399474	313	INTRON	INTRON	SLC44A1	ENSG00000070214.16	ENST00000374724.1:ENST00000374723.5:ENST00000470972.5:ENST00000374720.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	220	2	6.64163	7.06532	7.48901	6.11769e-4	1.50187e-4	0.0145086	0.0036849
chr3	75497640	75497740	1504108	0	+	0.46	(0.45,0.485]	chr3	160881	403	INTRON	INTRON	LINC02018	ENSG00000272690.6	ENST00000652894.1	lncRNA	lncRNA	lncRNA	lncRNA	0	216	2	6.76085	7.06513	7.36941	9.55229e-4	1.3016e-4	0.0184882	0.00332369
chr2	235867474	235867573	1066287	0	+	0.555556	(0.523,0.58]	chr2	115724	144	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	223	2	6.58447	7.06503	7.54559	5.51177e-4	1.68436e-4	0.0136794	0.00400681
chr5	134780054	134780150	2538519	0	+	0.385417	(0.36,0.39]	chr5	251865	20	INTRON	INTRON	DDX46	ENSG00000145833.16	ENST00000628477.2:ENST00000452510.7:ENST00000507392.5:ENST00000354283.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	218	2	6.77281	7.0650200000000005	7.35723	0.00130006	1.84422e-4	0.0220198	0.00427863
chr4	2644999	2645097	1999126	0	+	0.306122	(0.29,0.33]	chr4	203780	48	INTRON	INTRON	FAM193A	ENSG00000125386.16	ENST00000637812.2:ENST00000324666.9:ENST00000382839.7:ENST00000512465.5:ENST00000545951.5:ENST00000502458.5:ENST00000513898.5:ENST00000505311.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	207	2	7.03263	7.06452	7.09641	0.00115644	5.09077e-5	0.0205679	0.0016715
chr16	89306342	89306441	6659875	0	-	0.686869	(0.58,1]	chr16	666665	6	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1:ENST00000647539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	199	2	7.00012	7.06451	7.1289	6.58123e-4	1.22303e-5	0.0150669	5.9245e-4
chr12	26544547	26544647	5398669	0	-	0.46	(0.45,0.485]	chr12	528527	489	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	0	209	2	7.00954	7.06404	7.11854	0.00155043	6.25508e-5	0.0243127	0.00192791
chr1	23393478	23393578	424250	0	-	0.59	(0.58,1]	chr1	49808	2	SS5_PROX	SS5_PROX:INTRON	TCEA3	ENSG00000204219.11	ENST00000450454.7:ENST00000476978.2	protein_coding	protein_coding	protein_coding	protein_coding	0	203	2	6.67046	7.0640350000000005	7.45761	0.00135763	3.90231e-6	0.0224546	2.65981e-4
chr1	62266331	62266431	497490	0	-	0.56	(0.523,0.58]	chr1	59360	2	SS5_PROX	SS5_PROX:INTRON	KANK4	ENSG00000132854.19	ENST00000371153.9:ENST00000354381.3:ENST00000371150.5	protein_coding	protein_coding	protein_coding	protein_coding	0	209	2	6.72769	7.063915	7.40014	0.00275419	1.37794e-5	0.0332418	6.44262e-4
chr7	99381252	99381351	3427409	0	+	0.565657	(0.523,0.58]	chr7	331164	34	INTRON	INTRON	ARPC1B	ENSG00000130429.16	ENST00000443222.6:ENST00000414376.6:ENST00000645391.1:ENST00000695607.1:ENST00000455009.6:ENST00000484375.5:ENST00000695608.1:ENST00000418347.6:ENST00000646101.2:ENST00000427217.6:ENST00000451682.5:ENST00000431816.6:ENST00000458033.6:ENST00000417330.6:ENST00000695609.1:ENST00000484600.6:ENST00000429246.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	209	2	6.72769	7.063915	7.40014	0.00275419	1.37794e-5	0.0332418	6.44262e-4
chr7	99381351	99381451	3427410	0	+	0.49	(0.485,0.523]	chr7	331164	35	INTRON	INTRON	ARPC1B	ENSG00000130429.16	ENST00000443222.6:ENST00000414376.6:ENST00000645391.1:ENST00000695607.1:ENST00000455009.6:ENST00000484375.5:ENST00000695608.1:ENST00000418347.6:ENST00000646101.2:ENST00000427217.6:ENST00000451682.5:ENST00000431816.6:ENST00000458033.6:ENST00000417330.6:ENST00000695609.1:ENST00000484600.6:ENST00000429246.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	207	2	6.85388	7.063885	7.27389	0.00214661	2.19669e-5	0.0291055	8.99734e-4
chr1	5880013	5880113	386626	0	-	0.57	(0.523,0.58]	chr1	44407	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NPHP4	ENSG00000131697.18	ENST00000378156.9:ENST00000478423.6:ENST00000489180.6:ENST00000378169.7:ENST00000470763.1:ENST00000622020.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	206	2	6.98295	7.063225	7.1435	0.00168728	3.0928e-5	0.0254298	0.00115425
chr7	105733697	105733797	3670256	0	-	0.56	(0.523,0.58]	chr7	353945	422	INTRON	INTRON	ATXN7L1	ENSG00000146776.15	ENST00000419735.8	protein_coding	protein_coding	protein_coding	protein_coding	0	206	2	6.92683	7.0627200000000006	7.19861	0.00188118	2.60365e-5	0.0270971	0.00101533
chr8	726160	726260	3932992	0	-	0.54	(0.523,0.58]	chr8	376060	98	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	206	2	6.92683	7.0627200000000006	7.19861	0.00188118	2.60365e-5	0.0270971	0.00101533
chr12	122084064	122084164	5343429	0	+	0.45	(0.419,0.45]	chr12	521864	44	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	220	2	6.74598	7.06249	7.379	0.00155644	2.30334e-4	0.0243306	0.00498593
chr17	43568600	43568700	6739251	0	+	0.42	(0.419,0.45]	chr17	678633	234	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	212	2	6.89704	7.0623000000000005	7.22756	0.0036542	6.01346e-5	0.0389784	0.00187442
chr7	74496706	74496806	3391794	0	+	0.55	(0.523,0.58]	chr7	327343	422	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	0	206	2	7.02366	7.0622	7.10074	0.00155872	3.53278e-5	0.0243306	0.00126913
chr11	484754	484853	4784653	0	+	0.626263	(0.58,1]	chr11	457913	43	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	207	2	6.5414	7.06144	7.58148	0.00179018	2.51802e-6	0.0262802	1.94522e-4
chr16	85522680	85522780	6518298	0	+	0.53	(0.523,0.58]	chr16	646391	1634	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	211	2	6.83111	7.06132	7.29153	9.18957e-4	8.07247e-5	0.0180726	0.00233145
chr19	15642908	15643008	7215382	0	+	0.35	(0.33,0.36]	chr19	737133	9	INTRON	INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	220	2	6.6735	7.061035	7.44857	8.63039e-4	2.05279e-4	0.0175178	0.00461335
chr18	69612391	69612491	7085299	0	+	0.53	(0.523,0.58]	chr18	722127	125	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	3	716	2	5.42127	7.0610349999999995	8.7008	4.92495e-5	3.51768e-6	0.00386147	2.46878e-4
chr15	56990254	56990354	6111059	0	+	0.36	(0.33,0.36]	chr15	601587	688	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	219	2	6.52407	7.060945	7.59782	0.00487053	1.35786e-5	0.0456282	6.38969e-4
chrX	2225127	2225227	7966089	0	-	0.44	(0.419,0.45]	chrX	834328	35	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11	protein_coding	protein_coding	protein_coding	protein_coding	0	217	2	6.81573	7.060595	7.30546	0.0017767	1.90368e-4	0.0262235	0.0043642
chr1	150811443	150811539	587048	0	-	0.489583	(0.485,0.523]	chr1	67832	19	UTR3	UTR3:EXON_MRNA	ARNT	ENSG00000143437.21	ENST00000358595.10:ENST00000471844.6:ENST00000354396.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	213	2	6.77421	7.060345	7.34648	8.15285e-4	1.01398e-4	0.016997	0.00276585
chr16	57376774	57376872	6466032	0	+	0.367347	(0.36,0.39]	chr16	641365	38	INTRON	INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1	protein_coding	protein_coding	protein_coding	protein_coding	0	211	2	6.83294	7.05995	7.28696	0.00338675	4.25535e-5	0.0372054	0.00146059
chr1	5869187	5869286	386505	0	-	0.484848	(0.45,0.485]	chr1	44370	9	INTRON	INTRON	NPHP4	ENSG00000131697.18	ENST00000378156.9:ENST00000478423.6:ENST00000489180.6:ENST00000378169.7:ENST00000468253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	208	2	6.84509	7.059165	7.27324	0.00259845	2.82126e-5	0.0322672	0.00107564
chr11	64143666	64143766	5049014	0	-	0.46	(0.45,0.485]	chr11	490257	169	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	455	2	6.06861	7.059025	8.04944	2.46649e-4	5.70491e-6	0.00887696	3.47144e-4
chr16	1737633	1737732	6371315	0	+	0.59596	(0.58,1]	chr16	628851	22	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	418	2	6.3275	7.059005	7.79051	1.06611e-4	7.04461e-7	0.00577026	8.33178e-5
chr6	158327967	158328067	3061801	0	+	0.47	(0.45,0.485]	chr6	297592	133	INTRON	INTRON	ENSG00000274023:TULP4	ENSG00000274023.1:ENSG00000130338.13	ENST00000619713.1:ENST00000367097.8:ENST00000367094.6:ENST00000616856.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	0	208	2	6.82995	7.05791	7.28587	0.00267274	2.71448e-5	0.0327654	0.00104767
chr19	1415342	1415441	7187500	0	+	0.343434	(0.33,0.36]	chr19	731286	49	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	209	2	6.84286	7.0577950000000005	7.27273	0.00272744	3.61745e-5	0.0331786	0.00129373
chr2	152593943	152594043	928058	0	+	0.48	(0.45,0.485]	chr2	103106	125	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14:ENST00000492942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	209	2	6.76778	7.057595	7.34741	0.0029996	2.24799e-5	0.0348875	9.15915e-4
chr21	45476480	45476580	7631034	0	+	0.48	(0.45,0.485]	chr21	797684	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	209	2	6.9473	7.05741	7.16752	0.0014116	7.52721e-5	0.0229261	0.00222212
chr17	7110961	7111059	6847743	0	-	0.459184	(0.45,0.485]	chr17	693423	17	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	207	2	6.9327	7.05715	7.1816	0.00220534	3.72834e-5	0.0295736	0.00131851
chr21	44866065	44866150	7678502	0	-	0.541176	(0.523,0.58]	chr21	802772	3	SS3_PROX	SS3_PROX:INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	3961	2	6.35138	7.05691	7.76244	8.52034e-6	1.33965e-8	0.00176598	6.40158e-6
chr18	74916020	74916119	7092442	0	+	0.525253	(0.523,0.58]	chr18	722466	102	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	215	2	6.70356	7.05621	7.40886	7.2654e-4	1.18392e-4	0.0158761	0.00311099
chr5	139652464	139652564	2549685	0	+	0.52	(0.485,0.523]	chr5	253168	9	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	0	206	2	7.02291	7.0562000000000005	7.08949	0.00135789	4.77916e-5	0.0224546	0.00159602
chr17	56892329	56892429	6931121	0	-	0.44	(0.419,0.45]	chr17	706270	1	SS3_PROX	SS3_PROX:INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000574234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	516	2	6.56862	7.056010000000001	7.5434	0.00115496	2.16387e-6	0.0205679	1.7578e-4
chr9	129892368	129892466	4417247	0	-	0.428571	(0.419,0.45]	chr9	421743	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	FNBP1:ENSG00000288924	ENSG00000187239.17:ENSG00000288924.1	ENST00000443566.6:ENST00000420781.5:ENST00000446176.7:ENST00000685409.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	213	2	6.93022	7.055975	7.18173	0.00221619	1.38812e-4	0.0295806	0.00347953
chr7	47276224	47276321	3586539	0	-	0.474227	(0.45,0.485]	chr7	345959	12	UTR3	UTR3:EXON_MRNA	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000428457.1	protein_coding	protein_coding	protein_coding	protein_coding	3	733	2	5.46598	7.055795	8.64561	7.25284e-5	4.05293e-6	0.00477445	2.73363e-4
chr6	169649969	169650066	3304363	0	-	0.56701	(0.523,0.58]	chr6	319869	3	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	206	2	6.99575	7.055075	7.1144	0.00130498	4.88649e-5	0.0220198	0.00161739
chr7	143385906	143386003	3510764	0	+	0.505155	(0.485,0.523]	chr7	338486	13	INTRON	INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	206	2	7.0076	7.05491	7.10222	0.00132433	5.00839e-5	0.0222129	0.00164756
chr16	619158	619257	6368585	0	+	0.626263	(0.58,1]	chr16	628044	5	INTRON	INTRON	RAB40C	ENSG00000197562.10	ENST00000535977.5:ENST00000569575.5:ENST00000539661.5:ENST00000566290.5:ENST00000248139.8:ENST00000568586.5:ENST00000538492.5:ENST00000565511.5:ENST00000509637.6:ENST00000563109.1:ENST00000564703.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	202	2	6.85311	7.054845	7.25658	3.6888e-4	3.10807e-5	0.0110278	0.00115612
chr10	18572057	18572157	4642449	0	-	0.43	(0.419,0.45]	chr10	443321	197	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	211	2	7.03629	7.054130000000001	7.07197	0.00269142	1.03265e-4	0.0329086	0.00280222
chr2	77528473	77528573	1203315	0	-	0.44	(0.419,0.45]	chr2	130025	62	INTRON	INTRON	LRRTM4	ENSG00000176204.14	ENST00000456154.1	protein_coding	protein_coding	protein_coding	protein_coding	0	315	2	5.75936	7.054055	8.34875	0.00285253	2.57184e-4	0.0294017	0.00907657
chr13	112912716	112912816	5654743	0	+	0.42	(0.419,0.45]	chr13	555099	22	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000442625.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	228	2	6.55525	7.0538799999999995	7.55251	0.00113591	3.84925e-4	0.0203584	0.00726694
chr14	103638782	103638882	5924205	0	+	0.5	(0.485,0.523]	chr14	579587	89	INTRON	INTRON	KLC1	ENSG00000126214.22	ENST00000557172.5:ENST00000348520.10:ENST00000380038.7:ENST00000334553.11:ENST00000555467.1:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	205	2	6.89835	7.053395	7.20844	0.00197036	2.69474e-5	0.0278418	0.00104303
chr16	20903913	20904013	6417998	0	+	0.38	(0.36,0.39]	chr16	634694	8	INTRON	INTRON	LYRM1	ENSG00000102897.10	ENST00000568663.5:ENST00000412082.6:ENST00000439021.5:ENST00000567165.5:ENST00000569023.5:ENST00000568820.5:ENST00000562740.5:ENST00000219168.8:ENST00000567954.6:ENST00000396052.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	212	2	6.72352	7.05305	7.38258	0.00411221	3.21598e-5	0.0414433	0.00118653
chr20	64270391	64270490	7511216	0	+	0.616162	(0.58,1]	chr20	783907	20	INTRON	INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609818.1	protein_coding	protein_coding	protein_coding	protein_coding	2	1069	2	6.93673	7.052175	7.16762	3.79695e-6	7.29258e-8	0.00122199	1.92876e-5
chr15	67102223	67102323	6139440	0	+	0.48	(0.45,0.485]	chr15	603944	28	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1:ENST00000559092.1:ENST00000560175.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	744	2	5.02763	7.05175	9.07587	2.9533e-5	1.6654e-5	0.00305784	7.38685e-4
chr9	91417769	91417869	4334156	0	-	0.44	(0.419,0.45]	chr9	414047	65	INTRON	INTRON	NFIL3	ENSG00000165030.4	ENST00000297689.4	protein_coding	protein_coding	protein_coding	protein_coding	0	213	2	6.89842	7.051724999999999	7.20503	0.00212618	1.51593e-4	0.0289767	0.00370696
chr11	45881010	45881107	4850363	0	+	0.515464	(0.485,0.523]	chr11	463885	2	UTR3	UTR3:EXON_MRNA	CRY2	ENSG00000121671.12	ENST00000417225.6:ENST00000616623.4:ENST00000443527.6:ENST00000616080.2	protein_coding	protein_coding	protein_coding	protein_coding	0	208	2	6.87889	7.051295	7.2237	0.00104165	7.40532e-5	0.0193905	0.00219184
chr10	79204865	79204964	4533407	0	+	0.454545	(0.45,0.485]	chr10	432445	28	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	212	2	6.79659	7.050895000000001	7.3052	0.00108226	1.17286e-4	0.0198031	0.00309421
chr7	103924979	103925079	3663048	0	-	0.42	(0.419,0.45]	chr7	353511	74	INTRON	INTRON	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1:ENST00000681401.1:ENST00000679689.1:ENST00000681182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	226	2	6.40787	7.050765	7.69366	0.00835435	1.5558e-5	0.0613588	7.03148e-4
chr7	158917164	158917262	3523161	0	+	0.428571	(0.419,0.45]	chr7	340293	25	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	210	2	6.99386	7.050705	7.10755	0.00308705	8.45142e-5	0.0354967	0.0024172
chr22	48754230	48754330	7751812	0	+	0.57	(0.523,0.58]	chr22	812294	24	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000336769.9	protein_coding	protein_coding	protein_coding	protein_coding	0	261	2	6.09678	7.050694999999999	8.00461	6.74499e-4	2.14394e-4	0.0108081	0.0082811
chr2	216187426	216187525	1024092	0	+	0.383838	(0.36,0.39]	chr2	111645	250	INTRON	INTRON	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	209	2	6.8774	7.050605	7.22381	0.00312796	5.11391e-5	0.0356998	0.00167326
chr16	28728441	28728541	6431221	0	+	0.45	(0.419,0.45]	chr16	636440	8	INTRON	INTRON	EIF3C	ENSG00000184110.15	ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5:ENST00000565932.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	210	2	7.00717	7.05037	7.09357	0.00301591	8.791e-5	0.0350218	0.00248329
chr6	13590690	13590785	2855854	0	+	0.347368	(0.33,0.36]	chr6	279046	13	INTRON	INTRON	SIRT5	ENSG00000124523.17	ENST00000680432.1:ENST00000681012.1:ENST00000397350.7:ENST00000680442.1:ENST00000680754.1:ENST00000679658.1:ENST00000681243.1:ENST00000680747.1:ENST00000681818.1:ENST00000680402.1:ENST00000679663.1:ENST00000379250.10:ENST00000680852.1:ENST00000679922.1:ENST00000681231.1:ENST00000359782.8:ENST00000606117.2:ENST00000379262.8:ENST00000681905.1:ENST00000680937.1:ENST00000680151.1:ENST00000680707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	207	2	6.98605	7.049709999999999	7.11337	0.002089	5.79558e-5	0.0287557	0.00182637
chr16	89913528	89913627	6526311	0	+	0.707071	(0.58,1]	chr16	647715	4	UTR3	UTR3:UTR5:EXON_MRNA:INTRON	TCF25:ENSG00000267048:MC1R	ENSG00000141002.20:ENSG00000267048.1:ENSG00000258839.4	ENST00000640279.1:ENST00000570217.1:ENST00000539976.1:ENST00000555427.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	0	252	2	5.89541	7.04922	8.20303	0.0066708	2.65347e-7	0.0540577	4.36902e-5
chr18	79145055	79145155	7097700	0	+	0.62	(0.58,1]	chr18	722822	8	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000586672.5:ENST00000590271.5:ENST00000490210.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	490	2	5.49277	7.04864	8.60451	2.27154e-4	5.97785e-8	0.00851514	1.6646e-5
chr11	70792346	70792446	5062205	0	-	0.5	(0.485,0.523]	chr11	492701	745	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	469	2	5.54049	7.0483	8.55611	6.61668e-5	2.53674e-5	0.00451657	9.97976e-4
chr8	25246655	25246755	3774705	0	+	0.44	(0.419,0.45]	chr8	363472	25	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000410074.5:ENST00000481100.5	protein_coding	protein_coding	protein_coding	protein_coding	1	540	2	5.20449	7.04801	8.89153	1.25773e-4	9.08466e-5	0.00528297	0.00325222
chr15	68090887	68090987	6140862	0	+	0.38	(0.36,0.39]	chr15	604075	26	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000564915.5:ENST00000249636.11:ENST00000562190.1:ENST00000545237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	213	2	6.82481	7.047890000000001	7.27097	0.00152619	1.5953e-4	0.0240809	0.00385227
chr6	170399466	170399565	3076574	0	+	0.424242	(0.419,0.45]	chr6	299192	35	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	6	3632	2	6.18603	7.047375	7.90872	6.44517e-5	3.34243e-9	0.00446482	2.67308e-6
chr20	2931683	2931783	7418252	0	+	0.52	(0.485,0.523]	chr20	772714	80	INTRON	INTRON	PTPRA	ENSG00000132670.21	ENST00000455631.5:ENST00000399903.7:ENST00000216877.10:ENST00000431048.5:ENST00000318266.9:ENST00000430705.5:ENST00000356147.3	protein_coding	protein_coding	protein_coding	protein_coding	0	204	2	7.01065	7.046615	7.08258	0.00158449	3.97904e-5	0.0245893	0.00138788
chr1	193193804	193193904	309671	0	+	0.44	(0.419,0.45]	chr1	35001	67	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	211	2	6.94586	7.045965	7.14607	0.00236107	1.32913e-4	0.0306624	0.00337193
chr11	65085758	65085852	4869635	0	+	0.361702	(0.36,0.39]	chr11	467665	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ZFPL1	ENSG00000162300.13	ENST00000650243.1:ENST00000294258.8:ENST00000531761.5:ENST00000453524.6:ENST00000526289.5:ENST00000526334.5:ENST00000526440.1:ENST00000533216.1:ENST00000526945.5:ENST00000532200.1:ENST00000530488.1:ENST00000530744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	208	2	6.92054	7.04588	7.17122	0.00289488	5.95532e-5	0.03418	0.00186148
chr1	1223143	1223243	380418	0	-	0.6	(0.58,1]	chr1	42843	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000403997.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	198	2	6.75605	7.045505	7.33496	0.00112759	5.99783e-6	0.0202727	3.5765e-4
chr6	36680373	36680473	2906393	0	+	0.71	(0.58,1]	chr6	285237	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CDKN1A	ENSG00000124762.14	ENST00000615513.4:ENST00000448526.6:ENST00000459970.1:ENST00000405375.5:ENST00000244741.10:ENST00000373711.3:ENST00000478800.1:ENST00000462537.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	199	2	6.70531	7.045294999999999	7.38528	0.00125905	5.03066e-6	0.0215793	3.16553e-4
chr17	29130495	29130591	6876467	0	-	0.5	(0.485,0.523]	chr17	697994	16	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000590242.5:ENST00000528564.2:ENST00000528322.6:ENST00000585573.6:ENST00000533420.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	772	2	5.61736	7.044919999999999	8.47248	1.46015e-4	4.44218e-7	0.00674452	6.15549e-5
chr13	94031093	94031193	5625825	0	+	0.43	(0.419,0.45]	chr13	553070	28	INTRON	INTRON	GPC6	ENSG00000183098.11	ENST00000377047.9	protein_coding	protein_coding	protein_coding	protein_coding	0	253	2	6.04441	7.044895	8.04538	0.0149622	5.46022e-6	0.0835955	3.36398e-4
chr7	76997821	76997920	3398778	0	+	0.575758	(0.523,0.58]	chr7	328286	71	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	208	2	6.83111	7.044454999999999	7.2578	9.82792e-4	8.07247e-5	0.0187972	0.00233145
chr3	197609823	197609923	1992464	0	-	0.33	(0.29,0.33]	chr3	202845	2	SS3_PROX	SS3_PROX:INTRON	SDHAP4	ENSG00000214135.9	ENST00000453454.5:ENST00000685600.1:ENST00000688268.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	212	2	6.71345	7.044055	7.37466	6.56748e-4	1.32058e-4	0.0150669	0.00336653
chr6	79065699	79065799	3184759	0	-	0.41	(0.39,0.419]	chr6	309201	45	INTRON	INTRON	PHIP	ENSG00000146247.14	ENST00000275034.5	protein_coding	protein_coding	protein_coding	protein_coding	0	208	2	6.89055	7.043865	7.19718	0.00314209	5.58433e-5	0.0358106	0.00177997
chr6	169660562	169660662	3304477	0	-	0.42	(0.419,0.45]	chr6	319898	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2:ENST00000467418.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	209	2	6.99386	7.043715	7.09357	0.00308705	8.791e-5	0.0354967	0.00248329
chr2	120098151	120098251	886743	0	+	0.47	(0.45,0.485]	chr2	100342	45	INTRON	INTRON	EPB41L5	ENSG00000115109.14	ENST00000263713.10:ENST00000443902.6:ENST00000331393.8:ENST00000443124.5:ENST00000452780.1:ENST00000489017.5:ENST00000461128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	215	2	6.6866	7.043535	7.40047	8.99052e-4	1.61391e-4	0.0178386	0.00387712
chr2	665449	665547	1079799	0	-	0.469388	(0.45,0.485]	chr2	117536	17	UTR3	UTR3:EXON_MRNA	TMEM18	ENSG00000151353.15	ENST00000281017.8	protein_coding	protein_coding	protein_coding	protein_coding	0	205	2	6.97458	7.04348	7.11238	0.00203802	4.5955e-5	0.0283511	0.00154731
chr9	137723059	137723159	4265521	0	+	0.66	(0.58,1]	chr9	407352	54	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000460486.3:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	208	2	6.44159	7.0432	7.64481	0.00221069	2.00974e-6	0.0295736	1.67176e-4
chr2	48353548	48353648	793242	0	+	0.42	(0.419,0.45]	chr2	90414	64	INTRON	INTRON	FOXN2	ENSG00000170802.17	ENST00000413569.5:ENST00000340553.8	protein_coding	protein_coding	protein_coding	protein_coding	2	856	2	5.65981	7.042895	8.42598	2.70508e-4	1.72253e-6	0.00934214	1.50516e-4
chr12	105132770	105132870	5315315	0	+	0.47	(0.45,0.485]	chr12	517710	51	INTRON	INTRON	WASHC4	ENSG00000136051.15	ENST00000311317.8:ENST00000550053.5:ENST00000332180.10:ENST00000620430.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	205	2	6.90408	7.04284	7.1816	0.00232708	3.72834e-5	0.0303784	0.00131851
chr5	1326927	1327025	2609084	0	-	0.530612	(0.523,0.58]	chr5	259719	6	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	216	2	6.43755	7.04275	7.64795	0.00473049	6.21771e-6	0.0449253	3.67561e-4
chr5	69218415	69218515	2441047	0	+	0.34	(0.33,0.36]	chr5	243261	3	SS5_PROX	SS5_PROX:INTRON	MRPS36	ENSG00000134056.12	ENST00000256441.5:ENST00000507022.1:ENST00000512880.5:ENST00000602380.1:ENST00000503793.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	207	2	6.98111	7.042455	7.1038	0.00167326	8.52689e-5	0.0253255	0.00243134
chr7	134895254	134895354	3495339	0	+	0.35	(0.33,0.36]	chr7	336911	32	INTRON	INTRON	CALD1	ENSG00000122786.20	ENST00000417172.5:ENST00000436461.6:ENST00000422748.5:ENST00000454108.5:ENST00000361675.7:ENST00000430085.5:ENST00000482470.5:ENST00000361901.6:ENST00000445569.6:ENST00000489019.6:ENST00000435928.1:ENST00000393118.6:ENST00000443197.5:ENST00000424922.5:ENST00000495522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	206	2	6.90185	7.041885	7.18192	0.00244473	4.7357e-5	0.0311837	0.00158593
chr10	79204964	79205063	4533408	0	+	0.434343	(0.419,0.45]	chr10	432445	29	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	209	2	7.03629	7.041345	7.0464	0.00281529	1.03265e-4	0.0336649	0.00280222
chr2	158496692	158496792	935347	0	+	0.5	(0.485,0.523]	chr2	103367	380	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	486	2	5.37706	7.041235	8.70541	4.80875e-5	4.25218e-5	0.00382077	0.0014604
chr5	1465865	1465961	2609382	0	-	0.5	(0.485,0.523]	chr5	259790	17	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000503252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	995	2	6.32165	7.04007	7.75849	3.19366e-5	4.68783e-6	0.00315992	3.01071e-4
chr6	56514555	56514653	3152777	0	-	0.510204	(0.485,0.523]	chr6	307611	28	INTRON	INTRON	DST	ENSG00000151914.22	ENST00000244364.10:ENST00000312431.10:ENST00000421834.6:ENST00000680361.1:ENST00000370788.6:ENST00000520645.6:ENST00000340834.10:ENST00000361203.7	protein_coding	protein_coding	protein_coding	protein_coding	0	207	2	6.84483	7.040065	7.2353	0.00101791	8.20567e-5	0.0191524	0.00236018
chr16	22424013	22424113	6566804	0	-	0.43	(0.419,0.45]	chr16	655121	14	INTRON	INTRON	CDR2:RRN3P3	ENSG00000140743.8:ENSG00000257122.5	ENST00000564542.5:ENST00000563573.5:ENST00000569045.1:ENST00000551766.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	2	636	2	5.71541	7.03988	8.36435	2.49669e-4	7.00432e-6	0.00894955	4.008e-4
chr8	38806443	38806543	3802627	0	+	0.48	(0.45,0.485]	chr8	365853	4	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5:ENST00000522544.5:ENST00000524354.5:ENST00000523239.5:ENST00000317827.9:ENST00000276520.12:ENST00000520973.5:ENST00000521528.6:ENST00000521935.5:ENST00000523834.1:ENST00000521154.1:ENST00000524193.1:ENST00000522955.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	205	2	7.02468	7.03978	7.05488	0.00175046	5.97847e-5	0.0259608	0.00186524
chr1	43561216	43561316	107051	0	+	0.54	(0.523,0.58]	chr1	13192	69	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	203	2	6.85345	7.039425	7.2254	0.00216679	2.39394e-5	0.0292299	9.57041e-4
chr7	103936570	103936670	3663164	0	-	0.44	(0.419,0.45]	chr7	353511	190	INTRON	INTRON	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1:ENST00000681401.1:ENST00000679689.1:ENST00000681182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	254	2	6.01834	7.03908	8.05982	0.015582500000000001	5.22819e-6	0.0849828	3.2605e-4
chr13	113634802	113634902	5659357	0	+	0.57	(0.523,0.58]	chr13	555810	2	SS5_PROX	SS5_PROX:INTRON	TFDP1	ENSG00000198176.13	ENST00000375370.10:ENST00000544902.5:ENST00000408980.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	207	2	6.64312	7.03905	7.43498	0.00323048	1.23313e-5	0.0362983	5.95111e-4
chr16	29272812	29272912	6433565	0	+	0.51	(0.485,0.523]	chr16	636745	207	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	219	2	6.56002	7.0389099999999996	7.5178	5.7709e-4	1.90696e-4	0.0140531	0.0043642
chr7	158916578	158916676	3523155	0	+	0.44898	(0.419,0.45]	chr7	340293	19	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	212	2	6.84938	7.03867	7.22796	0.00204103	1.73559e-4	0.0283511	0.0040962
chr10	132712452	132712552	4618592	0	+	0.54	(0.523,0.58]	chr10	441181	16	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000487614.1:ENST00000498337.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	203	2	7.02653	7.038355	7.05018	0.00148008	4.44459e-5	0.023604	0.00150854
chr19	2337014	2337110	7189491	0	+	0.59375	(0.58,1]	chr19	731784	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	484	2	5.68311	7.038209999999999	8.39331	1.44643e-4	1.31332e-7	0.00670896	2.78493e-5
chr2	239347281	239347381	1392183	0	-	0.5	(0.485,0.523]	chr2	148752	228	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	589	2	5.56658	7.0378300000000005	8.50908	7.31399e-5	5.11447e-6	0.00478657	3.21345e-4
chr19	1997863	1997963	7307772	0	-	0.35	(0.33,0.36]	chr19	753492	4	SS3_PROX	SS3_PROX:INTRON	BTBD2	ENSG00000133243.10	ENST00000255608.9:ENST00000589200.3:ENST00000590646.5:ENST00000587742.5:ENST00000588395.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	208	2	6.7171	7.037635	7.35817	0.00343661	2.80261e-5	0.0375956	0.00107243
chr5	10708271	10708371	2612119	0	-	0.47	(0.45,0.485]	chr5	260254	243	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	205	2	6.99423	7.037455	7.08068	0.00166658	6.5472e-5	0.0252632	0.00199814
chr7	30294983	30295082	3339004	0	+	0.545455	(0.523,0.58]	chr7	323133	47	INTRON	INTRON	ZNRF2	ENSG00000180233.11	ENST00000323037.5	protein_coding	protein_coding	protein_coding	protein_coding	0	216	2	6.60501	7.03703	7.46905	6.43551e-4	1.58554e-4	0.0148938	0.00384084
chr20	62958560	62958656	7508282	0	+	0.666667	(0.58,1]	chr20	783180	6	INTRON	INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	197	2	6.93984	7.0369399999999995	7.13404	4.87191e-4	2.32442e-5	0.0127785	9.36605e-4
chr4	128859430	128859529	2132082	0	+	0.454545	(0.45,0.485]	chr4	216567	16	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	0	210	2	6.59951	7.036860000000001	7.47421	0.00408353	1.51996e-5	0.0413652	6.9067e-4
chr6	1737380	1737480	3080245	0	-	0.37	(0.36,0.39]	chr6	299476	105	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	210	2	6.69067	7.036625	7.38258	0.00435707	3.21598e-5	0.0427656	0.00118653
chr2	119766479	119766579	883656	0	+	0.47	(0.45,0.485]	chr2	100098	57	INTRON	INTRON	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000460162.1:ENST00000420482.5:ENST00000460289.5:ENST00000488279.6:ENST00000485247.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	204	2	6.96076	7.036569999999999	7.11238	0.00209187	4.5955e-5	0.0287557	0.00154731
chr17	14330554	14330654	6683085	0	+	0.47	(0.45,0.485]	chr17	670741	252	INTRON	INTRON	HS3ST3B1	ENSG00000125430.9	ENST00000360954.3:ENST00000466596.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	204	2	6.97458	7.036355	7.09813	0.00203802	4.79692e-5	0.0283511	0.00159846
chr5	61157995	61158093	2682204	0	-	0.357143	(0.33,0.36]	chr5	264729	4	UTR3	UTR3:EXON_MRNA	SMIM15	ENSG00000188725.8	ENST00000339020.8	protein_coding	protein_coding	protein_coding	protein_coding	0	225	2	6.49101	7.035915	7.58082	6.6657e-4	3.40831e-4	0.0152017	0.00667174
chr9	135836365	135836465	4431110	0	-	0.48	(0.45,0.485]	chr9	423507	84	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	211	2	6.56336	7.03515	7.50694	0.00436001	1.3731e-5	0.0427656	6.43436e-4
chr14	91221441	91221537	5899571	0	+	0.510417	(0.485,0.523]	chr14	576435	8	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	440	2	5.93556	7.03509	8.13462	1.6142e-4	7.1014e-6	0.00712539	4.04994e-4
chr6	87339322	87339420	2951335	0	+	0.459184	(0.45,0.485]	chr6	290444	18	INTRON	INTRON	SMIM8	ENSG00000111850.11	ENST00000608353.5:ENST00000392863.6:ENST00000229570.9:ENST00000448282.6:ENST00000608525.5:ENST00000369572.3:ENST00000608868.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	204	2	7.01529	7.0349	7.05451	0.00188703	5.46803e-5	0.0271069	0.00175188
chr20	32144294	32144393	7454524	0	+	0.353535	(0.33,0.36]	chr20	775941	8	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	0	206	2	6.79698	7.034855	7.27273	0.00296844	3.61745e-5	0.0346919	0.00129373
chr17	82005342	82005442	6815350	0	+	0.66	(0.58,1]	chr17	688641	11	EXON_MRNA	EXON_MRNA:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	414	2	6.36869	7.0335350000000005	7.69838	1.3248e-4	6.05407e-7	0.00637826	7.52596e-5
chr1	246311592	246311691	703901	0	-	0.626263	(0.58,1]	chr1	82426	57	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	414	2	5.79153	7.033385	8.27524	3.34154e-5	4.91044e-6	0.00320976	3.11791e-4
chr9	135836165	135836265	4431108	0	-	0.52	(0.485,0.523]	chr9	423507	82	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	202	2	6.91288	7.033365	7.15385	0.00191584	3.1927e-5	0.0274102	0.00117872
chr19	41905425	41905489	7264279	0	+	0.46875	(0.45,0.485]	chr19	745341	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARHGEF1	ENSG00000076928.18	ENST00000600274.5:ENST00000354532.8:ENST00000599846.5:ENST00000347545.8:ENST00000378152.8:ENST00000337665.8:ENST00000599589.5:ENST00000595897.5:ENST00000595723.5:ENST00000600517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	204	2	6.84509	7.03334	7.22159	0.00259845	3.30215e-5	0.0322672	0.00120982
chr18	48846710	48846810	7059745	0	+	0.45	(0.419,0.45]	chr18	720358	290	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000587860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	211	2	6.68142	7.033205000000001	7.38499	0.00529005	3.82846e-5	0.047841	0.00134767
chr1	1063566	1063666	1373	0	+	0.57	(0.523,0.58]	chr1	314	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000217801	ENSG00000217801.11	ENST00000688131.1:ENST00000456409.6:ENST00000692821.1:ENST00000394517.7:ENST00000427998.6:ENST00000685011.1:ENST00000692266.1:ENST00000412397.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	203	2	6.77614	7.0332	7.29026	0.00251197	1.95191e-5	0.031696	8.25524e-4
chr10	84394342	84394442	4536748	0	+	0.39	(0.36,0.39]	chr10	432817	4	SS5_PROX	SS5_PROX:INTRON	CCSER2	ENSG00000107771.17	ENST00000372088.8:ENST00000224756.12:ENST00000494144.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	209	2	6.875	7.033005	7.19101	0.00176912	1.38592e-4	0.0261505	0.00347765
chr1	144746733	144746833	229979	0	+	0.44	(0.419,0.45]	chr1	25236	75	INTRON	INTRON	LSP1P5	ENSG00000288905.1	ENST00000692403.1:ENST00000692166.1	lncRNA	lncRNA	lncRNA	lncRNA	0	235	2	6.38214	7.032415	7.68269	8.94765e-4	6.07209e-4	0.0178289	0.0100293
chr7	1938790	1938890	3529612	0	-	0.67	(0.58,1]	chr7	340962	15	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000450235.5:ENST00000437877.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	195	2	6.82104	7.031745	7.24245	9.78215e-4	8.27171e-6	0.0187475	4.48419e-4
chr14	72953760	72953860	5879893	0	+	0.36	(0.33,0.36]	chr14	573939	2	SS3_PROX	SS3_PROX:INTRON	DCAF4	ENSG00000119599.17	ENST00000353777.7:ENST00000509320.5:ENST00000358377.7:ENST00000394234.6:ENST00000509153.5:ENST00000555042.5:ENST00000553457.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	218	2	6.59523	7.031725	7.46822	8.30658e-4	2.55497e-4	0.0171232	0.00541562
chr6	170399864	170399964	3076578	0	+	0.42	(0.419,0.45]	chr6	299192	39	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	3	1829	2	6.57465	7.031335	7.48802	1.09858e-4	2.75017e-8	0.00585043	1.01736e-5
chr3	184367000	184367100	1644324	0	+	0.4	(0.39,0.419]	chr3	172774	2	SS5_PROX	SS5_PROX:INTRON	POLR2H	ENSG00000163882.10	ENST00000456318.6:ENST00000438240.5:ENST00000455712.5:ENST00000430783.5:ENST00000443489.5:ENST00000452961.5:ENST00000429568.1:ENST00000488213.5:ENST00000489043.1:ENST00000476003.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	207	2	6.96985	7.031165	7.09248	0.0021839	1.07091e-4	0.0293961	0.00288045
chr16	83916285	83916384	6513087	0	+	0.474747	(0.45,0.485]	chr16	646141	9	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	213	2	6.48824	7.02925	7.57026	0.00499158	1.12733e-5	0.0463896	5.59324e-4
chr8	73635901	73636001	3998220	0	-	0.45	(0.419,0.45]	chr8	382473	181	INTRON	INTRON	STAU2	ENSG00000040341.18	ENST00000524300.6:ENST00000522695.5:ENST00000523558.5:ENST00000521210.5:ENST00000355780.9:ENST00000519961.5:ENST00000521727.5:ENST00000521451.5:ENST00000522509.5:ENST00000517542.5:ENST00000518981.5:ENST00000518767.5:ENST00000518502.5:ENST00000521293.5:ENST00000521447.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	208	2	6.96133	7.02921	7.09709	0.00257476	1.27315e-4	0.0321387	0.00327695
chr11	45882177	45882275	4850375	0	+	0.5	(0.485,0.523]	chr11	463885	14	UTR3	UTR3:EXON_MRNA	CRY2	ENSG00000121671.12	ENST00000616623.4:ENST00000443527.6:ENST00000616080.2	protein_coding	protein_coding	protein_coding	protein_coding	0	218	2	6.53888	7.02834	7.5178	5.7709e-4	2.02788e-4	0.0140531	0.0045746
chr14	55581351	55581451	5823605	0	+	0.4	(0.39,0.419]	chr14	569329	6	INTRON	INTRON	KTN1	ENSG00000126777.18	ENST00000557267.1:ENST00000395314.8:ENST00000554567.1:ENST00000555498.5:ENST00000438792.6:ENST00000459737.5:ENST00000395308.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	206	2	7.01529	7.028315	7.04134	0.00239617	9.4123e-5	0.0309227	0.00261888
chr18	13262345	13262445	7023184	0	+	0.68	(0.58,1]	chr18	717514	430	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000590371.5:ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000590115.1:ENST00000677055.1:ENST00000399848.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	194	2	6.89838	7.02826	7.15814	8.25028e-4	1.10629e-5	0.0170688	5.52474e-4
chr6	41058122	41058221	3130842	0	-	0.575758	(0.523,0.58]	chr6	305368	54	INTRON	INTRON	OARD1	ENSG00000124596.17	ENST00000482853.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	442	2	5.76279	7.027635	8.29248	1.17267e-4	1.18162e-5	0.00604041	5.79919e-4
chr22	46290957	46291050	7743260	0	+	0.677419	(0.58,1]	chr22	811892	7	INTRON	INTRON	TTC38	ENSG00000075234.17	ENST00000381031.8:ENST00000451998.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	218	2	6.41826	7.027395	7.63653	1.53179e-4	1.27804e-4	0.00689544	0.00328053
chr2	196922586	196922686	1351134	0	-	0.34	(0.33,0.36]	chr2	143483	4	SS3_PROX	SS3_PROX:INTRON	PGAP1	ENSG00000197121.15	ENST00000354764.9:ENST00000423035.5:ENST00000470179.5:ENST00000409475.5:ENST00000409188.5:ENST00000374738.3:ENST00000485830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	209	2	6.78349	7.026624999999999	7.26976	0.00121926	1.50436e-4	0.0211633	0.00368673
chr19	39157946	39158045	7259588	0	+	0.494949	(0.485,0.523]	chr19	744161	7	INTRON	INTRON	PAK4	ENSG00000130669.17	ENST00000602004.1:ENST00000599470.5:ENST00000360442.8:ENST00000321944.8:ENST00000593480.5:ENST00000358301.7:ENST00000593690.5:ENST00000599386.5:ENST00000599657.5	protein_coding	protein_coding	protein_coding	protein_coding	0	201	2	6.98339	7.02564	7.06789	0.00167095	4.163e-5	0.0252949	0.00144246
chrX	2382860	2382960	7967672	0	-	0.41	(0.39,0.419]	chrX	834355	445	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	206	2	6.96985	7.02486	7.07987	0.00223454	1.07091e-4	0.0297409	0.00288045
chr15	56990154	56990254	6111058	0	+	0.29	[0,0.29]	chr15	601587	687	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	200	2	6.84738	7.024705	7.20203	4.8161e-4	5.93902e-5	0.0127176	0.00185705
chr1	246738989	246739086	374094	0	+	0.402062	(0.39,0.419]	chr1	42112	26	INTRON	INTRON	SCCPDH	ENSG00000143653.10	ENST00000366510.4	protein_coding	protein_coding	protein_coding	protein_coding	0	205	2	6.94722	7.02466	7.1021	0.00283905	7.34431e-5	0.033773	0.00217924
chr7	141766257	141766357	3509993	0	+	0.4	(0.39,0.419]	chr7	338351	155	INTRON	INTRON	SSBP1	ENSG00000106028.11	ENST00000465582.5	protein_coding	protein_coding	protein_coding	protein_coding	2	763	2	5.16755	7.024585	8.88162	5.89719e-4	3.29661e-7	0.0142357	5.03596e-5
chr17	82717943	82718043	6818057	0	+	0.59	(0.58,1]	chr17	689120	1	SS3_PROX	SS3_PROX:INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	413	2	5.75649	7.024509999999999	8.29253	3.20454e-5	5.56285e-6	0.00316089	3.40678e-4
chr10	79204766	79204865	4533406	0	+	0.40404	(0.39,0.419]	chr10	432445	27	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	207	2	6.90694	7.02441	7.14188	0.00199601	1.27923e-4	0.0280662	0.00328053
chr16	85388736	85388836	6516958	0	+	0.5	(0.485,0.523]	chr16	646391	294	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	240	2	6.2314	7.024235	7.81707	4.86354e-4	3.12689e-4	0.0100453	0.00857996
chr7	74496406	74496506	3391791	0	+	0.47	(0.45,0.485]	chr7	327343	419	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	1	445	2	5.87923	7.023874999999999	8.16852	1.93607e-4	1.04424e-5	0.00784372	5.3048e-4
chr18	74916818	74916918	7092450	0	+	0.41	(0.39,0.419]	chr18	722466	110	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	208	2	6.85789	7.023765	7.18964	0.00182908	1.46825e-4	0.0266451	0.00363163
chr1	17675184	17675284	54963	0	+	0.55	(0.523,0.58]	chr1	5603	102	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	449	2	5.63134	7.023095	8.41485	9.05391e-5	1.80776e-5	0.00527541	7.83029e-4
chr15	52136056	52136156	6261565	0	-	0.47	(0.45,0.485]	chr15	617063	3	SS3_PROX	SS3_PROX:INTRON	GNB5	ENSG00000069966.19	ENST00000261837.12:ENST00000396335.8:ENST00000358784.11:ENST00000559348.5:ENST00000558519.5:ENST00000561313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	218	2	6.54668	7.02306	7.49944	7.40531e-4	2.40818e-4	0.0160724	0.00517788
chr12	120983863	120983963	5340969	0	+	0.47	(0.45,0.485]	chr12	521546	44	INTRON	INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000400024.6:ENST00000560968.5:ENST00000402929.5:ENST00000535955.5:ENST00000538626.2:ENST00000538646.5:ENST00000541924.5:ENST00000544574.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	539	2	5.63757	7.022765	8.40796	4.31844e-4	7.74154e-7	0.0119405	8.87873e-5
chr9	71756375	71756475	4314673	0	-	0.31	(0.29,0.33]	chr9	412548	56	INTRON	INTRON	CEMIP2	ENSG00000135048.14	ENST00000377044.9:ENST00000377066.9:ENST00000542935.5:ENST00000543165.1:ENST00000545719.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	201	2	6.81491	7.022225000000001	7.22954	0.00202227	2.78574e-5	0.0283135	0.00106743
chr19	17484221	17484321	7220775	0	+	0.37	(0.36,0.39]	chr19	738264	1	SS5_PROX	SS5_PROX:INTRON	SLC27A1	ENSG00000130304.17	ENST00000600277.5:ENST00000598424.5:ENST00000252595.12:ENST00000599380.5:ENST00000600297.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	205	2	7.00087	7.021789999999999	7.04271	0.00232085	9.70744e-5	0.030354	0.00267267
chr6	2834312	2834412	3085362	0	-	0.53	(0.523,0.58]	chr6	299536	3	SS3_PROX	SS3_PROX:INTRON	SERPINB1	ENSG00000021355.13	ENST00000380739.6:ENST00000468511.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	210	2	6.66495	7.021375	7.3778	7.7332e-4	1.32802e-4	0.0164417	0.00337193
chr17	15465761	15465861	6860092	0	-	0.64	(0.58,1]	chr17	695067	123	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	193	2	6.88324	7.02069	7.15814	8.53086e-4	1.10629e-5	0.0173632	5.52474e-4
chr6	148448090	148448190	3033652	0	+	0.54	(0.523,0.58]	chr6	295919	73	INTRON	INTRON	SASH1	ENSG00000111961.19	ENST00000367467.8:ENST00000470750.1:ENST00000637469.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	201	2	6.96429	7.02025	7.07621	0.00140655	5.38186e-5	0.0229261	0.0017322
chr20	36858475	36858574	7557086	0	-	0.545455	(0.523,0.58]	chr20	789155	187	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	2	1141	2	6.80088	7.01933	7.23778	3.07698e-5	8.26827e-8	0.00310406	2.10079e-5
chr19	33505666	33505766	7365910	0	-	0.52	(0.485,0.523]	chr19	763467	43	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000651646.1:ENST00000590408.1:ENST00000593163.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	200	2	6.9415	7.01931	7.09712	0.00181258	3.80472e-5	0.0264638	0.00134128
chr5	72242687	72242787	2689357	0	-	0.45	(0.419,0.45]	chr5	265641	6	INTRON	INTRON	MRPS27	ENSG00000113048.18	ENST00000694990.1:ENST00000694989.1:ENST00000522042.2:ENST00000694988.1:ENST00000261413.10:ENST00000513900.6:ENST00000695403.1:ENST00000523654.6:ENST00000694998.1:ENST00000694997.1:ENST00000695298.1:ENST00000694996.1:ENST00000694995.1:ENST00000519143.6:ENST00000694994.1:ENST00000695297.1:ENST00000695296.1:ENST00000694993.1:ENST00000694992.1:ENST00000694991.1:ENST00000694999.1:ENST00000457646.9:ENST00000695404.1:ENST00000508863.6:ENST00000515404.5:ENST00000522404.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	209	2	6.66471	7.01909	7.37347	0.00544202	3.95779e-5	0.0486855	0.00138507
chr4	10103098	10103197	2195681	0	-	0.59596	(0.58,1]	chr4	222412	36	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	409	2	5.79153	7.01874	8.24595	3.58683e-5	4.91044e-6	0.00330375	3.11791e-4
chr16	29819949	29820047	6434930	0	+	0.357143	(0.33,0.36]	chr16	637001	3	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PAGR1:ENSG00000281348	ENSG00000280789.2:ENSG00000281348.1	ENST00000320330.8:ENST00000562285.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	203	2	6.99642	7.017995	7.03957	0.0018891	8.15617e-5	0.0271118	0.00235199
chr11	70776658	70776758	5062048	0	-	0.5	(0.485,0.523]	chr11	492701	588	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	740	2	4.8135	7.0178899999999995	9.22228	2.74259e-5	1.57636e-5	0.00228011	0.00105644
chr4	2826414	2826505	2000383	0	+	0.527473	(0.523,0.58]	chr4	203975	2	EXON_MRNA	EXON_MRNA:INTRON	SH3BP2	ENSG00000087266.17	ENST00000503393.8:ENST00000504294.5:ENST00000508385.5:ENST00000511663.5:ENST00000512014.5:ENST00000435136.8:ENST00000511185.5:ENST00000511747.6:ENST00000356331.9:ENST00000515737.5:ENST00000515183.5:ENST00000505941.5:ENST00000510204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	201	2	6.74402	7.0171399999999995	7.29026	0.00267018	1.95191e-5	0.0327654	8.25524e-4
chr16	89431326	89431426	6661147	0	-	0.62	(0.58,1]	chr16	666751	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	401	2	6.08073	7.01615	7.95157	7.27296e-5	1.73502e-6	0.00477445	1.51436e-4
chr2	131289429	131289529	892973	0	+	0.51	(0.485,0.523]	chr2	101034	1397	INTRON	INTRON	PLEKHB2	ENSG00000115762.17	ENST00000404460.5	protein_coding	protein_coding	protein_coding	protein_coding	0	200	2	7.0076	7.0158450000000006	7.02409	0.00154346	5.00839e-5	0.02427	0.00164756
chr8	28814311	28814411	3959054	0	-	0.42	(0.419,0.45]	chr8	378168	3	INTRON	INTRON	INTS9	ENSG00000104299.15	ENST00000416984.6:ENST00000521022.6:ENST00000523303.5:ENST00000521777.5:ENST00000522363.5:ENST00000520983.5:ENST00000523436.5:ENST00000518510.5:ENST00000524081.5:ENST00000520437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	205	2	6.86814	7.01513	7.16212	0.00384173	7.24277e-5	0.0399957	0.00215979
chr16	81679625	81679725	6510107	0	+	0.65	(0.58,1]	chr16	645979	6	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	1	509	2	6.14651	7.014419999999999	7.88233	4.73591e-5	8.55795e-7	0.00379612	9.48667e-5
chr5	127048215	127048315	2754187	0	-	0.45	(0.419,0.45]	chr5	269863	3	SS3_PROX	SS3_PROX:INTRON	C5orf63	ENSG00000164241.14	ENST00000535381.6:ENST00000508527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	207	2	6.71426	7.01436	7.31446	0.0050028	4.69009e-5	0.0463896	0.00157191
chr7	29195587	29195684	3334298	0	+	0.453608	(0.45,0.485]	chr7	322839	2	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5:ENST00000222792.11:ENST00000409350.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	760	2	5.4935	7.014279999999999	8.53506	2.30315e-4	5.10909e-7	0.00855862	6.72975e-5
chr10	96873507	96873607	4561269	0	+	0.38	(0.36,0.39]	chr10	435167	147	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	207	2	6.82481	7.0137599999999996	7.20271	0.0017314	1.5953e-4	0.0257605	0.00385227
chr1	43980812	43980910	110964	0	+	0.489796	(0.485,0.523]	chr1	13806	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	B4GALT2	ENSG00000117411.18	ENST00000498543.1:ENST00000434555.7:ENST00000372324.6:ENST00000481924.2:ENST00000497866.6:ENST00000485678.6:ENST00000356836.10:ENST00000309519.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	200	2	6.79237	7.013675	7.23498	0.00241519	2.48079e-5	0.0309229	9.81945e-4
chr7	143386003	143386099	3510765	0	+	0.46875	(0.45,0.485]	chr7	338486	14	INTRON	INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	201	2	7.00185	7.0132650000000005	7.02468	0.00193567	5.97847e-5	0.0275437	0.00186524
chr1	48226575	48226674	120965	0	+	0.606061	(0.58,1]	chr1	15165	14	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	192	2	6.97177	7.01244	7.05311	7.01049e-4	1.5843e-5	0.0156107	7.12006e-4
chr6	154468438	154468538	3297127	0	-	0.34	(0.33,0.36]	chr6	319119	178	INTRON	INTRON	CNKSR3	ENSG00000153721.19	ENST00000607772.6:ENST00000479339.5	protein_coding	protein_coding	protein_coding	protein_coding	0	202	2	6.84286	7.01239	7.18192	0.00272744	4.7357e-5	0.0331786	0.00158593
chr1	10555578	10555678	26908	0	+	0.47	(0.45,0.485]	chr1	3163	189	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding	0	202	2	6.93131	7.01236	7.09341	0.00162663	7.8924e-5	0.0249683	0.0022885
chr16	89432225	89432325	6661156	0	-	0.48	(0.45,0.485]	chr16	666753	5	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	446	2	6.20848	7.01221	7.81594	3.94969e-4	3.63654e-6	0.0113656	2.5321e-4
chr10	21672171	21672268	4458256	0	+	0.525773	(0.523,0.58]	chr10	427000	11	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	449	2	5.57879	7.01196	8.44513	8.49088e-5	2.14048e-5	0.00511795	8.81955e-4
chr18	786502	786602	7103777	0	-	0.38	(0.36,0.39]	chr18	723519	110	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	203	2	6.96242	7.01117	7.05992	0.00268438	8.20206e-5	0.0328854	0.00236018
chr4	2945820	2945911	2183678	0	-	0.615385	(0.58,1]	chr4	221539	2	INTRON	INTRON	NOP14	ENSG00000087269.16	ENST00000416614.7:ENST00000314262.10:ENST00000502735.5:ENST00000398071.4	protein_coding	protein_coding	protein_coding	protein_coding	0	192	2	6.82104	7.010975	7.20091	9.78215e-4	9.5483e-6	0.0187475	4.9724e-4
chr19	538045	538145	7184059	0	+	0.51	(0.485,0.523]	chr19	730433	5	INTRON	INTRON	CDC34	ENSG00000099804.9	ENST00000215574.9:ENST00000586283.6:ENST00000607527.5:ENST00000606065.3:ENST00000606400.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	199	2	6.98339	7.010725	7.03806	0.00167095	4.56236e-5	0.0252949	0.00154047
chr11	70811768	70811868	5062401	0	-	0.45	(0.419,0.45]	chr11	492713	42	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	213	2	6.67269	7.010315	7.34794	0.00164606	2.80959e-4	0.0250898	0.00578259
chr17	2236737	2236796	6834330	0	-	0.440678	(0.419,0.45]	chr17	691118	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11:ENST00000354901.8:ENST00000536871.6:ENST00000571442.5:ENST00000570659.5:ENST00000575663.5:ENST00000570606.5:ENST00000570668.1	protein_coding	protein_coding	protein_coding	protein_coding	0	213	2	6.67269	7.010315	7.34794	0.00164606	2.80959e-4	0.0250898	0.00578259
chr2	120277314	120277414	887945	0	+	0.48	(0.45,0.485]	chr2	100428	232	INTRON	INTRON	RALB	ENSG00000144118.14	ENST00000447591.5:ENST00000420510.5:ENST00000431732.5:ENST00000272519.10:ENST00000631312.2:ENST00000470417.1:ENST00000412383.5:ENST00000449649.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	214	2	6.38848	7.009695000000001	7.63091	0.0059625	9.3252e-6	0.0506812	4.88957e-4
chr16	30328690	30328790	6578234	0	-	0.34	(0.33,0.36]	chr16	657488	224	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	202	2	6.96563	7.00914	7.05265	0.0018431	8.91811e-5	0.0267953	0.00250881
chr4	94543711	94543811	2088582	0	+	0.4	(0.39,0.419]	chr4	212909	195	INTRON	INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000318007.9:ENST00000380180.7:ENST00000514830.5:ENST00000509333.5:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000508216.5:ENST00000511767.3:ENST00000510099.5:ENST00000509357.5:ENST00000513341.5:ENST00000508531.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	209	2	6.73651	7.008585	7.28066	0.0015472	2.05874e-4	0.0243048	0.00461335
chr11	70658029	70658129	5060855	0	-	0.47	(0.45,0.485]	chr11	492672	32	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	200	2	6.90408	7.00823	7.11238	0.00232708	4.5955e-5	0.0303784	0.00154731
chr20	34072830	34072907	7460400	0	+	0.376623	(0.36,0.39]	chr20	776607	1	INTRON	INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000413297.5:ENST00000246194.8:ENST00000333552.9:ENST00000442805.1:ENST00000493399.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	460	2	6.18972	7.008155	7.82659	5.34438e-4	5.84959e-6	0.0134768	3.52257e-4
chr22	32820294	32820394	7717812	0	+	0.53	(0.523,0.58]	chr22	807776	178	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	1	648	2	6.51383	7.008035	7.50224	5.7209e-5	9.94429e-6	0.00421145	5.11988e-4
chr14	104872055	104872155	5925932	0	+	0.64	(0.58,1]	chr14	579942	31	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	1	428	2	6.60371	7.00802	7.41233	2.58019e-4	2.53649e-7	0.00908087	4.22712e-5
chr2	235504340	235504440	1062639	0	+	0.58	(0.523,0.58]	chr2	115651	91	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	881	2	5.14222	7.007765	8.87331	2.56104e-4	1.03673e-7	0.00906717	2.38188e-5
chr3	13023895	13023995	1689375	0	-	0.48	(0.45,0.485]	chr3	176542	14	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	0	200	2	6.87488	7.007675	7.14047	0.00245783	4.22229e-5	0.0312836	0.0014546
chr21	43958235	43958335	7625366	0	+	0.5	(0.485,0.523]	chr21	796924	26	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000448845.1:ENST00000422850.5:ENST00000546158.1	protein_coding	protein_coding	protein_coding	protein_coding	0	201	2	6.67798	7.007244999999999	7.33651	0.00300122	1.80479e-5	0.0348875	7.82415e-4
chrX	316062	316149	7964856	0	-	0.494253	(0.485,0.523]	chrX	834136	4	INTRON	INTRON	GTPBP6	ENSG00000178605.13	ENST00000326153.9	protein_coding	protein_coding	protein_coding	protein_coding	2	1128	2	6.61302	7.00617	7.39932	4.56829e-5	5.16036e-8	0.00373545	1.54848e-5
chr12	56597447	56597544	5437627	0	-	0.360825	(0.36,0.39]	chr12	534676	20	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	2	752	2	5.17572	7.00611	8.8365	5.6445e-4	3.73842e-7	0.0138715	5.50265e-5
chr3	99872231	99872331	1517669	0	+	0.49	(0.485,0.523]	chr3	161648	538	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	436	2	6.21722	7.005470000000001	7.79372	3.28131e-4	2.81396e-6	0.010311	2.10228e-4
chr9	110169770	110169867	4217880	0	+	0.412371	(0.39,0.419]	chr9	400077	14	UTR3	UTR3:EXON_MRNA	PALM2AKAP2	ENSG00000157654.19	ENST00000374530.7:ENST00000302798.7:ENST00000434623.6:ENST00000374525.5	protein_coding	protein_coding	protein_coding	protein_coding	0	236	2	6.27083	7.0052	7.73957	7.20415e-4	6.54536e-4	0.0150543	0.0112959
chr1	26854818	26854915	69807	0	+	0.556701	(0.523,0.58]	chr1	7824	11	UTR3	UTR3:EXON_MRNA:INTRON	ZDHHC18	ENSG00000204160.12	ENST00000374142.9:ENST00000488397.3	protein_coding	protein_coding	protein_coding	protein_coding	1	524	2	5.71098	7.004645	8.29831	3.15136e-4	7.27602e-7	0.0100952	8.49186e-5
chr8	17096861	17096960	3761450	0	+	0.222222	[0,0.29]	chr8	361255	59	INTRON	INTRON	MICU3	ENSG00000155970.12	ENST00000318063.10:ENST00000519044.5	protein_coding	protein_coding	protein_coding	protein_coding	0	196	2	6.88185	7.00456	7.12727	5.68621e-4	5.33311e-5	0.01393	0.00172258
chr6	170399964	170400064	3076579	0	+	0.43	(0.419,0.45]	chr6	299192	40	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	5	2394	2	6.85215	7.00395	7.15575	3.52872e-5	6.07278e-8	0.00328636	1.67471e-5
chr5	82254854	82254952	2473945	0	+	0.387755	(0.36,0.39]	chr5	246819	9	UTR3	UTR3:EXON_MRNA:INTRON	ATG10	ENSG00000152348.16	ENST00000282185.8:ENST00000508814.5:ENST00000514253.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	202	2	6.8774	7.00394	7.13048	0.00312796	6.69803e-5	0.0356998	0.00203052
chr11	122744597	122744697	4958990	0	+	0.46	(0.45,0.485]	chr11	479003	171	INTRON	INTRON	UBASH3B	ENSG00000154127.10	ENST00000284273.6:ENST00000526386.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	309	2	5.46558	7.00296	8.54034	0.0273644	5.02143e-7	0.112372	6.65086e-5
chr16	81549980	81550080	6508793	0	+	0.45	(0.419,0.45]	chr16	645911	541	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	562	2	5.61891	7.00266	8.38641	6.85453e-4	1.94371e-6	0.0154116	1.63137e-4
chrX	153338603	153338702	7960563	0	+	0.464646	(0.45,0.485]	chrX	833135	15	INTRON	INTRON	ZNF275	ENSG00000063587.15	ENST00000370249.3:ENST00000650114.2:ENST00000370251.3	protein_coding	protein_coding	protein_coding	protein_coding	0	208	2	6.66742	7.00254	7.33766	0.00101613	1.70557e-4	0.0191524	0.00403679
chr4	75984824	75984923	2252978	0	-	0.444444	(0.419,0.45]	chr4	227518	24	INTRON	INTRON	SDAD1	ENSG00000198301.12	ENST00000395710.5:ENST00000356260.10:ENST00000395711.8:ENST00000503411.5:ENST00000504975.1:ENST00000514710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	203	2	6.93933	7.002275	7.06522	0.00339529	9.52125e-5	0.0372808	0.00262959
chr1	246232523	246232623	703110	0	-	0.45	(0.419,0.45]	chr1	82422	389	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	218	2	6.36713	7.002055	7.63698	0.00893106	1.83807e-5	0.0637469	7.9377e-4
chr5	122823770	122823869	2521480	0	+	0.50505	(0.485,0.523]	chr5	250369	44	INTRON	INTRON	SNX2	ENSG00000205302.7	ENST00000379516.7:ENST00000514949.1:ENST00000510372.5:ENST00000506847.5:ENST00000514030.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	203	2	6.756	7.001405	7.24681	9.94865e-4	1.07056e-4	0.0189547	0.00288045
chr2	235538435	235538535	1062982	0	+	0.55	(0.523,0.58]	chr2	115656	135	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	726	2	5.41384	7.001275000000001	8.58871	2.27283e-4	2.73321e-7	0.00851514	4.43081e-5
chr1	29238015	29238114	78388	0	+	0.676768	(0.58,1]	chr1	8914	9	INTRON	INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2	protein_coding	protein_coding	protein_coding	protein_coding	0	202	2	6.39965	7.001275	7.6029	0.00241374	2.33339e-6	0.0309229	1.85287e-4
chr1	155975203	155975302	599933	0	-	0.535354	(0.523,0.58]	chr1	70603	30	INTRON	INTRON	ARHGEF2	ENSG00000116584.22	ENST00000313695.11:ENST00000361247.9:ENST00000477754.2:ENST00000673475.1:ENST00000462460.6:ENST00000313667.8:ENST00000471589.5:ENST00000476273.1:ENST00000497907.5:ENST00000465079.1:ENST00000495070.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	202	2	6.5899	7.000875000000001	7.41185	0.00356891	1.32752e-5	0.0383188	6.28604e-4
chr9	126505549	126505648	4242423	0	+	0.50505	(0.485,0.523]	chr9	402713	24	UTR3	UTR3:EXON_MRNA	MVB12B	ENSG00000196814.15	ENST00000361171.8:ENST00000485886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	208	2	6.43798	7.000425	7.56287	0.00469187	8.79998e-6	0.0447158	4.68141e-4
chr2	3298395	3298495	1081091	0	-	0.42	(0.419,0.45]	chr2	117633	157	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	203	2	6.82367	6.99956	7.17545	0.00414811	6.97411e-5	0.0416765	0.00209831
chr16	85373643	85373742	6516807	0	+	0.606061	(0.58,1]	chr16	646391	143	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	217	2	6.34387	6.9991699999999994	7.65447	1.61506e-4	1.46869e-4	0.00675599	0.00387712
chr8	143321980	143322075	4095547	0	-	0.621053	(0.58,1]	chr8	389125	2	INTRON	INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	191	2	6.73933	6.997685	7.25604	0.00116939	7.89156e-6	0.0206836	4.34116e-4
chr12	112424914	112425014	5331534	0	+	0.51	(0.485,0.523]	chr12	520142	54	INTRON	INTRON	PTPN11	ENSG00000179295.19	ENST00000688597.1:ENST00000692624.1:ENST00000685487.1:ENST00000690210.1:ENST00000639857.2:ENST00000392597.5:ENST00000687906.1:ENST00000351677.7:ENST00000635625.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	198	2	6.94468	6.997645	7.05061	0.00146547	6.06735e-5	0.023492	0.00188492
chr19	6239589	6239689	7321408	0	-	0.5	(0.485,0.523]	chr19	756093	85	INTRON	INTRON	MLLT1	ENSG00000130382.9	ENST00000252674.9	protein_coding	protein_coding	protein_coding	protein_coding	0	197	2	6.85388	6.99688	7.13988	0.00214661	3.33392e-5	0.0291055	0.0012196
chr3	12966687	12966786	1688796	0	-	0.626263	(0.58,1]	chr3	176520	57	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	195	2	6.76083	6.99686	7.23289	3.89345e-4	4.22142e-5	0.0113333	0.0014546
chr16	23467290	23467389	6568571	0	-	0.50505	(0.485,0.523]	chr16	655371	20	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000567339.1:ENST00000568922.1:ENST00000566685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	3650	2	6.52399	6.996015	7.46804	2.57558e-6	2.30724e-8	0.00111692	9.06405e-6
chr6	131643928	131644028	3006955	0	+	0.43	(0.419,0.45]	chr6	294028	20	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000423831.5:ENST00000470930.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	207	2	6.76374	6.995850000000001	7.22796	0.00204103	2.19456e-4	0.0283511	0.00483494
chr16	85426120	85426220	6517332	0	+	0.49	(0.485,0.523]	chr16	646391	668	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	215	2	6.47351	6.995655	7.5178	5.7709e-4	2.44978e-4	0.0140531	0.00523316
chr2	72700210	72700310	1186942	0	-	0.43	(0.419,0.45]	chr2	128741	1242	INTRON	INTRON	EXOC6B	ENSG00000144036.16	ENST00000272427.11:ENST00000634650.1:ENST00000410104.1:ENST00000410112.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	202	2	6.91127	6.995369999999999	7.07947	0.00356503	9.14728e-5	0.0383188	0.00255616
chr17	15465162	15465262	6860086	0	-	0.47	(0.45,0.485]	chr17	695067	117	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	726	2	5.25321	6.99516	8.73711	3.7765e-4	2.62871e-7	0.011147	4.34529e-5
chr10	79114318	79114418	4532498	0	+	0.53	(0.523,0.58]	chr10	432420	447	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	212	2	6.52102	6.995035	7.46905	6.43551e-4	2.02818e-4	0.0148938	0.0045746
chr1	1108264	1108364	380265	0	-	0.62	(0.58,1]	chr1	42816	10	INTRON	INTRON	C1orf159	ENSG00000131591.18	ENST00000379339.5:ENST00000379325.7:ENST00000421241.7:ENST00000467751.5:ENST00000477196.5:ENST00000434641.5:ENST00000482816.5:ENST00000462097.5:ENST00000475119.5:ENST00000472741.5:ENST00000480643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	195	2	6.5414	6.9936050000000005	7.44581	0.00179018	4.06787e-6	0.0262802	2.73821e-4
chr20	4857304	4857404	7517114	0	-	0.48	(0.45,0.485]	chr20	784813	1	SS3_PROX	SS3_PROX:INTRON	SLC23A2	ENSG00000089057.15	ENST00000379333.5:ENST00000338244.6	protein_coding	protein_coding	protein_coding	protein_coding	0	208	2	6.62829	6.9936	7.35891	9.74981e-4	1.90839e-4	0.0187475	0.0043642
chr2	3287217	3287317	1080979	0	-	0.5	(0.485,0.523]	chr2	117633	45	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	200	2	6.62603	6.99342	7.36081	0.00330946	1.67181e-5	0.0368376	7.38685e-4
chr16	12260842	12260942	6392477	0	+	0.6	(0.58,1]	chr16	631965	608	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	197	2	6.48235	6.993125	7.5039	0.00202884	3.31459e-6	0.0283135	2.35778e-4
chr2	30534213	30534313	744670	0	+	0.51	(0.485,0.523]	chr2	86875	5	INTRON	INTRON	LCLAT1	ENSG00000172954.14	ENST00000466477.5:ENST00000465200.5:ENST00000319406.8:ENST00000379509.8:ENST00000491680.6:ENST00000309052.8:ENST00000478015.5:ENST00000476038.5:ENST00000476535.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	201	2	6.77421	6.993105	7.212	0.00106612	1.01398e-4	0.0196248	0.00276585
chr14	94452628	94452728	6046669	0	-	0.52	(0.485,0.523]	chr14	593143	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SERPINA11	ENSG00000186910.4	ENST00000334708.4	protein_coding	protein_coding	protein_coding	protein_coding	0	213	2	6.49563	6.99232	7.48901	6.11769e-4	2.29841e-4	0.0145086	0.00498593
chr10	70071023	70071123	4503507	0	+	0.63	(0.58,1]	chr10	430825	38	INTRON	INTRON	MACROH2A2	ENSG00000099284.15	ENST00000677255.1:ENST00000676683.1:ENST00000676699.1:ENST00000677659.1:ENST00000676609.1:ENST00000676923.1:ENST00000373255.9:ENST00000679349.1:ENST00000455786.1:ENST00000676608.1:ENST00000676692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	190	2	6.95657	6.992240000000001	7.02791	6.18479e-4	2.19702e-5	0.0145945	8.99734e-4
chr4	102688374	102688473	2294086	0	-	0.424242	(0.419,0.45]	chr4	230705	51	INTRON	INTRON	MANBA	ENSG00000109323.11	ENST00000644159.1:ENST00000647097.2:ENST00000514430.5:ENST00000646727.1:ENST00000644545.1:ENST00000646311.1:ENST00000647129.1:ENST00000642252.1:ENST00000645558.1:ENST00000645348.1:ENST00000505239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	202	2	6.97664	6.991905	7.00717	0.00301591	1.22002e-4	0.0350218	0.00318856
chr8	143322075	143322170	4095548	0	-	0.642105	(0.58,1]	chr8	389125	3	INTRON	INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	192	2	6.63475	6.99123	7.34771	0.00146621	5.73693e-6	0.023492	3.48335e-4
chr1	1340703	1340803	381183	0	-	0.57	(0.523,0.58]	chr1	43161	2	SS3_PROX	SS3_PROX:INTRON	DVL1	ENSG00000107404.21	ENST00000378891.9:ENST00000378888.10	protein_coding	protein_coding	protein_coding	protein_coding	1	431	2	6.22851	6.9910049999999995	7.7535	3.60464e-4	2.54994e-6	0.0108631	1.96266e-4
chr1	45586083	45586181	115549	0	+	0.459184	(0.45,0.485]	chr1	14451	15	INTRON	INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000530840.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7:ENST00000629893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	201	2	6.81414	6.99083	7.16752	0.0014116	1.11424e-4	0.0229261	0.00297888
chr12	124005534	124005633	5348443	0	+	0.363636	(0.36,0.39]	chr12	523067	2	INTRON	INTRON	ZNF664	ENSG00000179195.16	ENST00000537532.5:ENST00000539644.5:ENST00000392404.7:ENST00000538932.6:ENST00000337815.9:ENST00000541448.5:ENST00000542493.5:ENST00000543017.5:ENST00000546098.5:ENST00000539501.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	209	2	6.47612	6.990304999999999	7.50449	0.00632423	2.24376e-5	0.0524897	9.14635e-4
chr16	88580119	88580219	6521600	0	+	0.47	(0.45,0.485]	chr16	646718	20	INTRON	INTRON	ZC3H18	ENSG00000158545.16	ENST00000301011.10:ENST00000452588.6:ENST00000569435.5	protein_coding	protein_coding	protein_coding	protein_coding	0	198	2	6.97875	6.9902999999999995	7.00185	0.00193567	6.85584e-5	0.0275437	0.00207014
chr17	66509069	66509168	6785496	0	+	0.50505	(0.485,0.523]	chr17	684238	124	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	431	2	6.20006	6.988994999999999	7.77793	3.38985e-4	2.97833e-6	0.0105406	2.18763e-4
chrX	32859418	32859518	8020085	0	-	0.5	(0.485,0.523]	chrX	837295	92	INTRON	INTRON	DMD	ENSG00000198947.18	ENST00000357033.9:ENST00000378677.6:ENST00000488902.5:ENST00000420596.5:ENST00000448370.5:ENST00000682899.1:ENST00000683985.1:ENST00000288447.9:ENST00000684165.1:ENST00000682924.1:ENST00000682071.1:ENST00000684292.1:ENST00000684237.1:ENST00000682870.1:ENST00000684660.1:ENST00000683309.1:ENST00000684056.1:ENST00000683658.1:ENST00000682437.1:ENST00000682584.1:ENST00000684357.1:ENST00000472681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	205	2	6.64163	6.988685	7.33574	8.33022e-4	1.50187e-4	0.0171427	0.0036849
chr2	239371801	239371901	1392430	0	-	0.52	(0.485,0.523]	chr2	148759	185	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	198	2	6.67798	6.988625	7.29927	0.00300122	2.02879e-5	0.0348875	8.47843e-4
chr7	74712393	74712491	3393513	0	+	0.377551	(0.36,0.39]	chr7	327559	9	INTRON	INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5:ENST00000490431.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	202	2	6.85846	6.988614999999999	7.11877	0.00202009	1.4518e-4	0.0283135	0.00359568
chr3	12966886	12966986	1688798	0	-	0.64	(0.58,1]	chr3	176521	1	SS5_PROX	SS5_PROX:INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	197	2	6.66224	6.988194999999999	7.31415	3.2338e-4	5.8343e-5	0.0102338	0.00183149
chr16	81625992	81626092	6509557	0	+	0.6	(0.58,1]	chr16	645926	39	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	193	2	6.77976	6.988185	7.19661	4.22825e-4	3.96539e-5	0.011772	0.00138542
chr9	135838660	135838760	4431133	0	-	0.5	(0.485,0.523]	chr9	423507	107	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	197	2	6.72812	6.9880949999999995	7.24807	0.00272951	2.38146e-5	0.0331786	9.55691e-4
chr6	131016441	131016541	3261728	0	-	0.43	(0.419,0.45]	chr6	315599	7	INTRON	INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000392427.7:ENST00000368128.6:ENST00000527411.5:ENST00000525271.5:ENST00000528179.5:ENST00000526333.1:ENST00000530707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	468	2	5.53516	6.987550000000001	8.43994	2.16212e-4	4.84065e-5	0.00831529	0.00160761
chr3	10191987	10192086	1406798	0	+	0.474747	(0.45,0.485]	chr3	151140	136	INTRON	INTRON	IRAK2	ENSG00000134070.5	ENST00000256458.5	protein_coding	protein_coding	protein_coding	protein_coding	1	488	2	5.22908	6.987425	8.74577	7.8777e-5	5.88973e-5	0.00426503	0.0022885
chr17	12076196	12076295	6680432	0	+	0.383838	(0.36,0.39]	chr17	670598	60	INTRON	INTRON	MAP2K4	ENSG00000065559.15	ENST00000582183.5:ENST00000415385.7:ENST00000602305.5:ENST00000602375.5:ENST00000602811.5:ENST00000353533.10:ENST00000602537.5:ENST00000602686.5:ENST00000538465.7:ENST00000582897.5:ENST00000581941.5:ENST00000579089.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	207	2	6.68176	6.9873899999999995	7.29302	0.00146503	2.3726e-4	0.023492	0.0051158
chr14	105215968	105216065	6058157	0	-	0.556701	(0.523,0.58]	chr14	594783	27	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000392557.8:ENST00000446501.6:ENST00000635152.1:ENST00000547374.5:ENST00000551787.5:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	196	2	6.77614	6.987375	7.19861	0.00251197	2.60365e-5	0.031696	0.00101533
chr1	12584248	12584348	402445	0	-	0.6	(0.58,1]	chr1	46222	32	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	484	2	5.97387	6.98695	8.00003	7.19781e-5	5.581e-7	0.00475775	7.12027e-5
chr20	62922057	62922156	7585555	0	-	0.292929	(0.29,0.33]	chr20	792927	73	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8	protein_coding	protein_coding	protein_coding	protein_coding	0	197	2	6.89019	6.986879999999999	7.08357	0.00118668	7.82018e-5	0.0208412	0.00227541
chr12	133039247	133039347	5354340	0	+	0.4	(0.39,0.419]	chr12	523870	2	SS5_PROX	SS5_PROX:INTRON	ZNF84	ENSG00000198040.11	ENST00000392319.6:ENST00000543758.5:ENST00000438628.6:ENST00000540031.5:ENST00000539098.5:ENST00000539354.6:ENST00000539686.5:ENST00000536123.5:ENST00000327668.11:ENST00000543310.5:ENST00000545299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	203	2	6.63858	6.986785	7.33499	0.00489861	3.73979e-5	0.0457614	0.001322
chr1	39116306	39116406	93784	0	+	0.46	(0.45,0.485]	chr1	11068	102	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000689911.1:ENST00000567887.5:ENST00000372915.8:ENST00000472385.2:ENST00000693209.1:ENST00000524432.5:ENST00000467673.5:ENST00000688212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	198	2	6.75181	6.9867	7.22159	0.00308946	3.30215e-5	0.0354967	0.00120982
chr11	64200493	64200593	4868120	0	+	0.47	(0.45,0.485]	chr11	467025	2	SS5_PROX	SS5_PROX:INTRON	STIP1	ENSG00000168439.17	ENST00000358794.9:ENST00000305218.9:ENST00000536973.5:ENST00000538945.5:ENST00000540887.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	197	2	6.94679	6.985735	7.02468	0.00214762	5.97847e-5	0.0291055	0.00186524
chr5	860854	860953	2607963	0	-	0.585859	(0.58,1]	chr5	259417	99	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	0	189	2	6.75605	6.985469999999999	7.21489	0.00112759	9.09859e-6	0.0202727	4.79891e-4
chr9	133915363	133915463	4429554	0	-	0.53	(0.523,0.58]	chr9	423310	536	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	196	2	6.74402	6.98471	7.2254	0.00267018	2.39394e-5	0.0327654	9.57041e-4
chr22	37512536	37512634	7808332	0	-	0.438776	(0.419,0.45]	chr22	818439	4	INTRON	INTRON	CARD10	ENSG00000100065.15	ENST00000403299.5:ENST00000251973.10:ENST00000494166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	626	2	6.18549	6.98446	7.78343	2.33094e-4	1.19326e-5	0.00863036	5.82737e-4
chr6	20424224	20424324	2863224	0	+	0.39	(0.36,0.39]	chr6	279635	200	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	0	237	2	6.02754	6.984415	7.94129	0.0133452	6.03231e-6	0.0789398	3.59002e-4
chr3	17533064	17533164	1702698	0	-	0.35	(0.33,0.36]	chr3	177752	80	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1:ENST00000444471.5:ENST00000486224.5:ENST00000433533.5:ENST00000481396.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	199	2	6.90203	6.98382	7.06561	0.00179858	1.07164e-4	0.0263284	0.00288103
chr2	62814096	62814196	815041	0	+	0.48	(0.45,0.485]	chr2	92095	421	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000449820.5:ENST00000426940.5:ENST00000413434.5:ENST00000405482.5:ENST00000494958.1:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	197	2	6.97875	6.983515	6.98828	0.00198597	6.85584e-5	0.0279914	0.00207014
chr8	17769928	17770028	3946117	0	-	0.41	(0.39,0.419]	chr8	376991	1	SS5_PROX	SS5_PROX:INTRON	MTUS1	ENSG00000129422.15	ENST00000381869.5:ENST00000693296.1:ENST00000262102.10:ENST00000523718.5:ENST00000518755.1:ENST00000518891.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	200	2	6.93873	6.983495	7.02826	0.00245351	1.16947e-4	0.0312688	0.00308693
chr7	55123797	55123897	3372595	0	+	0.41	(0.39,0.419]	chr7	325297	45	INTRON	INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000450046.1	protein_coding	protein_coding	protein_coding	protein_coding	0	201	2	6.87442	6.9834499999999995	7.09248	0.0021839	1.40171e-4	0.0293961	0.00350296
chr17	78797924	78798023	6979428	0	-	0.555556	(0.523,0.58]	chr17	712642	24	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	USP36	ENSG00000055483.20	ENST00000588130.5:ENST00000587010.5:ENST00000591052.5:ENST00000589225.5:ENST00000587379.1:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	196	2	6.91578	6.9829799999999995	7.05018	0.00148008	6.24234e-5	0.023604	0.00192539
chr1	8759732	8759832	395154	0	-	0.33	(0.29,0.33]	chr1	45073	60	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	0	195	2	6.94842	6.98295	7.01748	0.00155425	5.3301e-5	0.0243306	0.00172247
chr1	55079859	55079959	491285	0	-	0.51	(0.485,0.523]	chr1	58560	2	SS3_PROX	SS3_PROX:INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	0	195	2	6.9415	6.982205	7.02291	0.00181258	4.77916e-5	0.0264638	0.00159602
chr15	65769191	65769291	6306034	0	-	0.39	(0.36,0.39]	chr15	621805	19	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	461	2	5.52464	6.982025	8.43941	1.6193e-4	4.39533e-5	0.00713932	0.00149886
chr9	133916062	133916162	4429561	0	-	0.61	(0.58,1]	chr9	423310	543	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	468	2	5.73952	6.981719999999999	8.22392	1.26423e-4	2.45702e-7	0.00622672	4.13888e-5
chr2	102120171	102120271	863587	0	+	0.43	(0.419,0.45]	chr2	97787	149	INTRON	INTRON	IL1R1	ENSG00000115594.12	ENST00000452403.5:ENST00000409929.5:ENST00000424272.5:ENST00000409589.5:ENST00000409329.5	protein_coding	protein_coding	protein_coding	protein_coding	0	205	2	6.57813	6.98156	7.38499	0.00629696	3.82846e-5	0.0523832	0.00134767
chr8	629737	629837	3932017	0	-	0.58	(0.523,0.58]	chr8	376005	21	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	196	2	6.89924	6.9812449999999995	7.06325	0.0014427	6.56505e-5	0.023287	0.00199995
chrX	123680952	123681052	8098885	0	-	0.48	(0.45,0.485]	chrX	844533	88	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5:ENST00000433883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	199	2	6.83147	6.981205	7.13094	0.00151409	1.05911e-4	0.0240218	0.00286061
chr21	43958335	43958434	7625367	0	+	0.515152	(0.485,0.523]	chr21	796924	27	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000448845.1:ENST00000422850.5:ENST00000546158.1	protein_coding	protein_coding	protein_coding	protein_coding	0	195	2	6.80799	6.98092	7.15385	0.0023441	3.1927e-5	0.0305023	0.00117872
chr1	950726	950826	379868	0	-	0.5	(0.485,0.523]	chr1	42701	2	SS5_PROX	SS5_PROX:INTRON	NOC2L	ENSG00000188976.11	ENST00000327044.7:ENST00000477976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	195	2	6.96956	6.980845	6.99213	0.00171649	5.25088e-5	0.025659	0.00170211
chr20	8324151	8324250	7428506	0	+	0.444444	(0.419,0.45]	chr20	773693	174	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	220	2	6.42741	6.98082	7.53423	0.00117443	5.39517e-4	0.0207078	0.00920925
chr20	50925260	50925359	7577302	0	-	0.393939	(0.39,0.419]	chr20	791673	61	INTRON	INTRON	ADNP	ENSG00000101126.18	ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	445	2	5.92553	6.98069	8.03585	3.70936e-4	1.32724e-5	0.0110707	6.28604e-4
chr6	147870402	147870502	3030873	0	+	0.4	(0.39,0.419]	chr6	295875	1330	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	0	199	2	6.96105	6.980675	7.0003	0.00276944	9.8223e-5	0.0332691	0.00269766
chr19	6691625	6691725	7322658	0	-	0.54	(0.523,0.58]	chr19	756435	5	INTRON	INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000695653.1:ENST00000695654.1:ENST00000695692.1:ENST00000695652.1:ENST00000695655.1:ENST00000598805.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	195	2	6.96429	6.98047	6.99665	0.00164293	5.38186e-5	0.0250898	0.0017322
chr10	50187116	50187215	4686535	0	-	0.494949	(0.485,0.523]	chr10	446863	45	UTR3	UTR3:EXON_MRNA	ASAH2	ENSG00000188611.17	ENST00000395526.9:ENST00000682911.1:ENST00000489640.5	protein_coding	protein_coding	protein_coding	protein_coding	1	423	2	5.93556	6.9803999999999995	8.02524	2.02941e-4	7.1014e-6	0.00805543	4.04994e-4
chr16	89306939	89307039	6659881	0	-	0.69	(0.58,1]	chr16	666665	12	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1:ENST00000647539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	407	2	6.43667	6.98029	7.52391	1.99239e-4	4.71143e-7	0.00796847	6.38118e-5
chr22	24092343	24092442	7695282	0	+	0.464646	(0.45,0.485]	chr22	805504	1	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6	protein_coding	protein_coding	protein_coding	protein_coding	0	197	2	6.75181	6.980095	7.20838	0.00308946	3.43738e-5	0.0354967	0.00124793
chr7	158915309	158915406	3523142	0	+	0.443299	(0.419,0.45]	chr7	340293	6	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	200	2	6.95316	6.979965	7.00677	0.00331448	1.1216e-4	0.0368376	0.00298349
chr8	128041070	128041168	3920292	0	+	0.387755	(0.36,0.39]	chr8	374321	8	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	1	467	2	6.36982	6.97931	7.5888	8.41206e-4	3.34848e-6	0.0172456	2.37485e-4
chr1	36293550	36293650	92482	0	+	0.47	(0.45,0.485]	chr1	10798	3	SS3_PROX	SS3_PROX:INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10:ENST00000466743.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	196	2	6.90408	6.9792950000000005	7.05451	0.00232708	5.46803e-5	0.0303784	0.00175188
chr12	109964535	109964633	5495530	0	-	0.479592	(0.45,0.485]	chr12	540752	25	INTRON	INTRON	GIT2	ENSG00000139436.22	ENST00000355312.8:ENST00000361006.9:ENST00000457474.6:ENST00000553118.5:ENST00000551209.5:ENST00000550186.5:ENST00000547815.5:ENST00000320063.10:ENST00000551455.5:ENST00000551721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	196	2	6.90408	6.9792950000000005	7.05451	0.00232708	5.46803e-5	0.0303784	0.00175188
chr7	158915699	158915797	3523146	0	+	0.418367	(0.39,0.419]	chr7	340293	10	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	201	2	6.84116	6.979275	7.11739	0.00208713	1.53866e-4	0.0287557	0.00374891
chr6	170399565	170399665	3076575	0	+	0.42	(0.419,0.45]	chr6	299192	36	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	3	1762	2	5.73491	6.979145000000001	8.22338	2.34033e-4	1.20036e-8	0.00863036	6.03578e-6
chr5	175881138	175881237	2594666	0	+	0.525253	(0.523,0.58]	chr5	257471	12	UTR3	UTR3:EXON_MRNA	CPLX2	ENSG00000145920.15	ENST00000359546.8:ENST00000393745.8	protein_coding	protein_coding	protein_coding	protein_coding	2	876	2	6.95516	6.9789650000000005	7.00277	0.00178078	3.5968e-8	0.0262315	1.20814e-5
chr17	46105885	46105985	6916953	0	-	0.53	(0.523,0.58]	chr17	704543	108	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2:ENST00000638269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	523	2	5.81865	6.97852	8.13839	2.51422e-4	1.24133e-6	0.0089838	1.20716e-4
chr12	124821205	124821305	5536926	0	-	0.56	(0.523,0.58]	chr12	546095	31	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000415380.6:ENST00000681117.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000539320.3:ENST00000545493.1:ENST00000541661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	222	2	6.312	6.978305000000001	7.64461	4.50547e-4	3.69994e-4	0.0121972	0.00704866
chr21	44866839	44866937	7678510	0	-	0.469388	(0.45,0.485]	chr21	802773	8	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	1999	2	6.72572	6.977825	7.22993	5.89187e-6	6.71886e-7	0.00147542	8.0658e-5
chr13	113058396	113058496	5656221	0	+	0.54	(0.523,0.58]	chr13	555189	36	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	1	424	2	5.77841	6.977665	8.17692	1.4954e-4	1.12313e-5	0.00681825	5.58392e-4
chr18	13590237	13590337	7026495	0	+	0.5	(0.485,0.523]	chr18	717646	44	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000677744.1:ENST00000593236.1:ENST00000678400.1:ENST00000586207.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	210	2	6.49563	6.9776299999999996	7.45963	6.49227e-4	2.29841e-4	0.0149631	0.00498593
chr1	78134297	78134396	165151	0	+	0.383838	(0.36,0.39]	chr1	18816	80	INTRON	INTRON	GIPC2	ENSG00000137960.6	ENST00000370759.4	protein_coding	protein_coding	protein_coding	protein_coding	0	229	2	6.2714	6.977535	7.68367	7.13729e-4	7.02479e-4	0.015621	0.0112151
chr2	121479020	121479120	1262516	0	-	0.56	(0.523,0.58]	chr2	136083	87	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	539	2	5.98062	6.9775	7.97438	1.7865e-4	2.13789e-6	0.00752305	1.744e-4
chr9	137569133	137569233	4435755	0	-	0.57	(0.523,0.58]	chr9	424466	36	INTRON	INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000475100.5:ENST00000472113.5:ENST00000485189.5:ENST00000467768.5:ENST00000477690.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	198	2	6.5899	6.977164999999999	7.36443	0.00356891	1.54352e-5	0.0383188	6.98728e-4
chr5	10708371	10708471	2612120	0	-	0.45	(0.419,0.45]	chr5	260254	244	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	201	2	6.88226	6.9771149999999995	7.07197	0.00269142	1.58518e-4	0.0329086	0.00384084
chr5	146150876	146150973	2784253	0	-	0.536082	(0.523,0.58]	chr5	272991	8	INTRON	INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000508667.5:ENST00000507095.1:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	194	2	6.92683	6.97668	7.02653	0.00188118	4.44459e-5	0.0270971	0.00150854
chr15	85009130	85009230	6174865	0	+	0.39	(0.36,0.39]	chr15	607383	264	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	443	2	5.89517	6.975935	8.0567	3.4265e-4	1.44223e-5	0.0105917	6.62881e-4
chr5	122823672	122823770	2521479	0	+	0.428571	(0.419,0.45]	chr5	250369	43	INTRON	INTRON	SNX2	ENSG00000205302.7	ENST00000379516.7:ENST00000514949.1:ENST00000510372.5:ENST00000506847.5:ENST00000514030.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	203	2	6.61339	6.9758700000000005	7.33835	0.0059347	4.37892e-5	0.0506158	0.00149507
chr2	24058613	24058713	725969	0	+	0.33	(0.29,0.33]	chr2	84850	36	INTRON	INTRON	FKBP1B	ENSG00000119782.14	ENST00000380991.8:ENST00000438630.5:ENST00000380986.9:ENST00000496149.5:ENST00000452109.1:ENST00000421839.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	194	2	6.93418	6.97583	7.01748	0.00159876	5.3301e-5	0.0246878	0.00172247
chr5	651096	651196	2378793	0	+	0.59	(0.58,1]	chr5	237646	28	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	190	2	6.61656	6.975759999999999	7.33496	0.00152464	5.99783e-6	0.0240691	3.5765e-4
chr1	65183611	65183711	158807	0	+	0.42	(0.419,0.45]	chr1	18056	172	INTRON	INTRON	AK4	ENSG00000162433.15	ENST00000545314.5:ENST00000497030.5:ENST00000470888.6:ENST00000546702.5:ENST00000395334.6:ENST00000327299.8:ENST00000474968.5:ENST00000479060.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	204	2	6.74598	6.975505	7.20503	0.00212618	2.30334e-4	0.0289767	0.00498593
chr12	111483131	111483231	5499212	0	-	0.51	(0.485,0.523]	chr12	541307	3	SS3_PROX	SS3_PROX:INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000643474.1:ENST00000643694.1:ENST00000645162.1:ENST00000551755.6:ENST00000644883.1:ENST00000647305.1:ENST00000495342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	194	2	6.85388	6.9755	7.09712	0.00214661	3.80472e-5	0.0291055	0.00134128
chr15	101354244	101354343	6363081	0	-	0.383838	(0.36,0.39]	chr15	627201	61	INTRON	INTRON	PCSK6	ENSG00000140479.18	ENST00000677364.1:ENST00000676598.1:ENST00000558951.5:ENST00000398185.6:ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000679007.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000559605.1:ENST00000560902.5:ENST00000611967.4:ENST00000615296.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	455	2	6.24204	6.975265	7.70849	6.70005e-4	4.97656e-6	0.0152294	3.148e-4
chr13	51403999	51404098	5715437	0	-	0.474747	(0.45,0.485]	chr13	560749	8	INTRON	INTRON	INTS6	ENSG00000102786.15	ENST00000398119.6:ENST00000311234.9:ENST00000469430.5:ENST00000497989.5:ENST00000486195.6:ENST00000491189.5:ENST00000466784.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	197	2	6.88225	6.975045	7.06784	0.00170784	9.12292e-5	0.025659	0.00255062
chr8	30421050	30421150	3788530	0	+	0.3	(0.29,0.33]	chr8	364885	227	INTRON	INTRON	RBPMS	ENSG00000157110.16	ENST00000320203.8:ENST00000339877.8:ENST00000287771.9:ENST00000397323.9:ENST00000517860.5:ENST00000520161.5:ENST00000523115.5:ENST00000519647.5:ENST00000521816.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	240	2	6.08779	6.974955	7.86212	7.71544e-4	2.37324e-4	0.0118336	0.0086821
chr21	43959333	43959433	7625377	0	+	0.54	(0.523,0.58]	chr21	796925	3	SS3_PROX	SS3_PROX:INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000448845.1:ENST00000422850.5:ENST00000546158.1	protein_coding	protein_coding	protein_coding	protein_coding	0	194	2	6.96913	6.974615	6.9801	0.0017332	5.12704e-5	0.0257605	0.00167326
chr3	129595887	129595987	1912189	0	-	0.57	(0.523,0.58]	chr3	194387	60	INTRON	INTRON	PLXND1	ENSG00000004399.13	ENST00000324093.9	protein_coding	protein_coding	protein_coding	protein_coding	0	227	2	6.235	6.973795	7.71259	4.59688e-4	3.92044e-4	0.0113511	0.00821903
chr7	74499501	74499601	3391822	0	+	0.36	(0.33,0.36]	chr7	327343	450	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	2	594	2	5.76328	6.973745	8.18421	2.00024e-4	4.22837e-6	0.00798199	2.81243e-4
chr9	129498564	129498664	4250762	0	+	0.66	(0.58,1]	chr9	404725	1	SS5_PROX	SS5_PROX:INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	518	2	5.59781	6.97326	8.34871	2.79643e-5	1.81571e-6	0.00298241	1.55823e-4
chr11	65444241	65444341	4871784	0	+	0.5	(0.485,0.523]	chr11	468177	216	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	55	26192	2	6.87845	6.97312	7.06779	1.10645e-6	2.18084e-9	8.65241e-4	2.15449e-6
chrX	106779310	106779409	7929010	0	+	0.383838	(0.36,0.39]	chrX	829711	58	INTRON	INTRON	RNF128	ENSG00000133135.14	ENST00000418562.5:ENST00000324342.7:ENST00000255499.3	protein_coding	protein_coding	protein_coding	protein_coding	0	261	2	5.93533	6.973095	8.01086	0.00167855	3.74524e-4	0.0203806	0.0111071
chr7	79453672	79453752	3402813	0	+	0.7375	(0.58,1]	chr7	328672	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MAGI2-AS3	ENSG00000234456.10	ENST00000616796.4:ENST00000429408.6:ENST00000683943.1:ENST00000426835.6:ENST00000446159.6:ENST00000663669.1:ENST00000661940.1:ENST00000616192.5:ENST00000657546.1:ENST00000655337.2:ENST00000668746.1:ENST00000629211.2:ENST00000613892.4	lncRNA	lncRNA	lncRNA	lncRNA	0	191	2	6.76083	6.97257	7.18431	4.34792e-4	4.22142e-5	0.0119405	0.0014546
chr8	25246755	25246855	3774706	0	+	0.51	(0.485,0.523]	chr8	363472	26	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000410074.5:ENST00000481100.5	protein_coding	protein_coding	protein_coding	protein_coding	0	198	2	6.756	6.972160000000001	7.18832	0.00111738	1.07056e-4	0.0202011	0.00288045
chr1	29280641	29280736	78827	0	+	0.463158	(0.45,0.485]	chr1	8965	1	INTRON	INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2:ENST00000415600.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	195	2	6.86006	6.9719	7.08374	0.00252685	5.00903e-5	0.031696	0.00164756
chr10	18571857	18571957	4642447	0	-	0.37	(0.36,0.39]	chr10	443321	195	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	199	2	6.875	6.971755	7.06851	0.00221433	1.38592e-4	0.0295806	0.00347765
chr10	63284938	63285038	4698268	0	-	0.44	(0.419,0.45]	chr10	447731	158	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	201	2	6.66471	6.97128	7.27785	0.00544202	5.20883e-5	0.0486855	0.00169273
chr20	44403278	44403333	7482947	0	+	0.472727	(0.45,0.485]	chr20	779644	1	UTR3	UTR3:EXON_MRNA:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000682427.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	197	2	6.66919	6.971215000000001	7.27324	0.0035963	2.82126e-5	0.0384878	0.00107564
chr16	12261542	12261642	6392484	0	+	0.58	(0.523,0.58]	chr16	631965	615	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	206	2	6.35489	6.971095	7.5873	0.00549977	7.56432e-6	0.0489559	4.21779e-4
chr7	892818	892918	3307712	0	+	0.58	(0.523,0.58]	chr7	320473	4	SS5_PROX	SS5_PROX:INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000407192.5:ENST00000464468.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	195	2	6.86558	6.970895	7.07621	0.00140655	7.2723e-5	0.0229261	0.00216169
chr7	76998814	76998914	3398788	0	+	0.64	(0.58,1]	chr7	328286	81	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	209	2	6.3691	6.970505	7.57191	1.78161e-4	1.49225e-4	0.00750602	0.00367368
chr19	3530591	3530691	7191604	0	+	0.55	(0.523,0.58]	chr19	732250	4	SS3_PROX	SS3_PROX:INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	198	2	6.74117	6.970470000000001	7.19977	0.00110271	1.05811e-4	0.020005	0.00286061
chr17	82630420	82630520	6989764	0	-	0.48	(0.45,0.485]	chr17	715035	1	SS5_PROX	SS5_PROX:INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000571835.5:ENST00000573616.5:ENST00000571817.5:ENST00000574828.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	225	2	6.26988	6.97024	7.6706	5.27905e-4	5.20615e-4	0.0133888	0.00899129
chr2	232899673	232899772	1383835	0	-	0.454545	(0.45,0.485]	chr2	147952	44	INTRON	INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000416114.3:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	198	2	6.61725	6.97018	7.32311	0.00395394	2.42204e-5	0.0406092	9.65272e-4
chr13	113050318	113050417	5656138	0	+	0.353535	(0.33,0.36]	chr13	555180	31	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	202	2	6.69243	6.96981	7.24719	0.00127321	1.94643e-4	0.0217367	0.00443969
chr2	43265939	43266039	1131959	0	-	0.5	(0.485,0.523]	chr2	123910	327	INTRON	INTRON	THADA	ENSG00000115970.19	ENST00000405975.7:ENST00000407351.5:ENST00000398653.5:ENST00000405006.8:ENST00000467668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	195	2	6.67798	6.96951	7.26104	0.00300122	2.28684e-5	0.0348875	9.27248e-4
chr6	13591072	13591168	2855858	0	+	0.385417	(0.36,0.39]	chr6	279046	17	INTRON	INTRON	SIRT5	ENSG00000124523.17	ENST00000680432.1:ENST00000681012.1:ENST00000397350.7:ENST00000680442.1:ENST00000680754.1:ENST00000679658.1:ENST00000681243.1:ENST00000680747.1:ENST00000681818.1:ENST00000680402.1:ENST00000679663.1:ENST00000379250.10:ENST00000680852.1:ENST00000679922.1:ENST00000681231.1:ENST00000359782.8:ENST00000606117.2:ENST00000379262.8:ENST00000681905.1:ENST00000680937.1:ENST00000680151.1:ENST00000680707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	441	2	5.92748	6.96917	8.01086	3.74524e-4	1.30716e-5	0.0111071	6.22255e-4
chr13	97346004	97346104	5632045	0	+	0.31	(0.29,0.33]	chr13	553194	24	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	194	2	6.73503	6.96902	7.20301	0.00236326	3.02338e-5	0.0306624	0.00113492
chr7	157383571	157383671	3522192	0	+	0.47	(0.45,0.485]	chr7	340186	8	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000429029.6:ENST00000262177.9:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000634080.1:ENST00000468928.5:ENST00000465908.5:ENST00000487480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	197	2	6.83147	6.96875	7.10603	0.00158793	1.05911e-4	0.0245893	0.00286061
chr8	128041855	128041953	3920300	0	+	0.520408	(0.485,0.523]	chr8	374321	16	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	0	202	2	6.43798	6.9682949999999995	7.49861	0.00469187	1.08033e-5	0.0447158	5.4404e-4
chr11	126276293	126276346	4963395	0	+	0.603774	(0.58,1]	chr11	479741	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FOXRED1	ENSG00000110074.12	ENST00000689283.1:ENST00000688927.1:ENST00000532125.2:ENST00000692336.1:ENST00000686888.1:ENST00000685857.1:ENST00000525083.6:ENST00000685765.1:ENST00000688588.1:ENST00000685601.1:ENST00000685484.1:ENST00000533839.6:ENST00000690512.1:ENST00000534011.6:ENST00000263578.10:ENST00000689477.1:ENST00000689765.1:ENST00000692039.1:ENST00000525770.5:ENST00000685844.1:ENST00000527004.5:ENST00000693133.1:ENST00000686242.1:ENST00000687699.1:ENST00000532101.6:ENST00000687786.1:ENST00000534315.5:ENST00000688100.1:ENST00000530642.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	388	2	5.96271	6.967945	7.97318	6.90752e-5	2.65862e-6	0.00464748	2.014e-4
chr19	49660026	49660119	7397288	0	-	0.526882	(0.523,0.58]	chr19	769292	2	SS3_PROX	SS3_PROX:INTRON	IRF3	ENSG00000126456.16	ENST00000599680.1:ENST00000377135.8:ENST00000377139.8:ENST00000601291.5:ENST00000596822.5:ENST00000600911.5:ENST00000309877.11:ENST00000597198.5:ENST00000597636.5:ENST00000596644.5:ENST00000599144.5:ENST00000593922.5:ENST00000596765.5:ENST00000599223.5:ENST00000600022.5:ENST00000598808.5:ENST00000596756.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	193	2	6.95516	6.96763	6.9801	0.00178078	5.12704e-5	0.0262315	0.00167326
chr11	65086039	65086133	4869638	0	+	0.393617	(0.39,0.419]	chr11	467665	8	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ZFPL1	ENSG00000162300.13	ENST00000650243.1:ENST00000294258.8:ENST00000531761.5:ENST00000453524.6:ENST00000526334.5:ENST00000526440.1:ENST00000526945.5:ENST00000532200.1:ENST00000530488.1:ENST00000530744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	199	2	6.67259	6.96702	7.26145	0.00461678	4.63445e-5	0.0442497	0.00155699
chr7	5698371	5698470	3538344	0	-	0.464646	(0.45,0.485]	chr7	341641	455	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000484458.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	197	2	6.81414	6.966340000000001	7.11854	0.00155043	1.11424e-4	0.0243127	0.00297888
chr16	12261842	12261942	6392487	0	+	0.63	(0.58,1]	chr16	631965	618	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	193	2	6.46212	6.965719999999999	7.46932	0.00211728	3.74461e-6	0.028892	2.5891e-4
chr17	76333829	76333929	6975352	0	-	0.36	(0.33,0.36]	chr17	712036	10	INTRON	INTRON	PRPSAP1	ENSG00000161542.17	ENST00000446526.8:ENST00000324684.8:ENST00000435555.6:ENST00000436498.6:ENST00000494662.5:ENST00000423915.1:ENST00000442767.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	200	2	6.56114	6.965555	7.36997	0.00455773	2.70516e-5	0.0438198	0.00104594
chr2	240614990	240615090	1075089	0	+	0.4	(0.39,0.419]	chr2	116637	76	INTRON	INTRON	CAPN10:GPR35	ENSG00000142330.20:ENSG00000178623.13	ENST00000270364.11:ENST00000319838.10:ENST00000403859.1	protein_coding	protein_coding	protein_coding	protein_coding	0	197	2	6.96105	6.965450000000001	6.96985	0.00276944	1.07091e-4	0.0332691	0.00288045
chrX	109686736	109686835	8090998	0	-	0.474747	(0.45,0.485]	chrX	843698	9	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000505855.1:ENST00000508092.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	2547	2	6.59663	6.96459	7.33255	1.43482e-5	1.80042e-8	0.00219026	7.67447e-6
chr10	84394442	84394541	4536749	0	+	0.383838	(0.36,0.39]	chr10	432818	1	INTRON	INTRON	CCSER2	ENSG00000107771.17	ENST00000372088.8:ENST00000224756.12:ENST00000494144.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	197	2	6.93931	6.9645	6.98969	0.00255527	1.15604e-4	0.0320164	0.00305897
chr10	35465841	35465940	4476972	0	+	0.484848	(0.45,0.485]	chr10	428126	100	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	199	2	6.7242	6.9636949999999995	7.20319	0.00131807	1.44769e-4	0.0221729	0.00359413
chr2	232900267	232900366	1383841	0	-	0.454545	(0.45,0.485]	chr2	147952	50	INTRON	INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000416114.3:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	428	2	6.0808	6.96357	7.84634	3.71603e-4	5.48607e-6	0.0110758	3.37015e-4
chr2	25432187	25432286	1106557	0	-	0.454545	(0.45,0.485]	chr2	120838	42	INTRON	INTRON	DTNB	ENSG00000138101.20	ENST00000495466.6:ENST00000496972.6:ENST00000404103.7:ENST00000405222.5:ENST00000407038.7:ENST00000407661.7:ENST00000406818.8:ENST00000398951.6:ENST00000288642.12:ENST00000407186.5:ENST00000356599.9:ENST00000479898.5:ENST00000482145.5:ENST00000481841.5:ENST00000485845.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	194	2	6.81466	6.96352	7.11238	0.00274987	4.5955e-5	0.0332418	0.00154731
chr2	232900762	232900861	1383846	0	-	0.585859	(0.58,1]	chr2	147952	55	INTRON	INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000416114.3:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	188	2	6.61656	6.962845	7.30913	0.00152464	6.56269e-6	0.0240691	3.8256e-4
chr10	132712851	132712951	4618596	0	+	0.6	(0.58,1]	chr10	441181	20	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000487614.1:ENST00000498337.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	188	2	6.8169	6.962565	7.10823	5.16402e-4	3.50609e-5	0.0132022	0.00126332
chr1	161791007	161791107	254791	0	+	0.4	(0.39,0.419]	chr1	30431	2	SS3_PROX	SS3_PROX:INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000680633.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	199	2	6.80711	6.96225	7.11739	0.00208713	1.69216e-4	0.0287557	0.004014
chr18	3005628	3005727	7106758	0	-	0.474747	(0.45,0.485]	chr18	723735	229	INTRON	INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1	protein_coding	protein_coding	protein_coding	protein_coding	1	427	2	5.78553	6.961825	8.13812	2.05976e-4	1.40498e-5	0.00809983	6.52007e-4
chr16	12261342	12261442	6392482	0	+	0.61	(0.58,1]	chr16	631965	613	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	207	2	6.16945	6.961805	7.75416	0.00387582	1.35867e-6	0.0401256	1.28554e-4
chr19	18467605	18467704	7347867	0	-	0.575758	(0.523,0.58]	chr19	761486	13	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	222	2	6.26113	6.96152	7.66191	4.34904e-4	4.27166e-4	0.0119405	0.00779962
chr10	119347473	119347573	4594722	0	+	0.53	(0.523,0.58]	chr10	439173	205	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	197	2	6.53464	6.961485	7.38833	0.00395533	1.43066e-5	0.0406092	6.59187e-4
chr9	37222320	37222420	4149317	0	+	0.4	(0.39,0.419]	chr9	394662	354	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	197	2	6.73829	6.961130000000001	7.18397	0.00411485	5.80168e-5	0.0414433	0.00182637
chr20	4955401	4955501	7518114	0	-	0.31	(0.29,0.33]	chr20	784900	223	INTRON	INTRON	SLC23A2	ENSG00000089057.15	ENST00000379333.5:ENST00000338244.6:ENST00000468355.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	196	2	6.75058	6.960875	7.17117	9.94585e-4	1.18395e-4	0.0189547	0.00311099
chr3	10887293	10887393	1408405	0	+	0.42	(0.419,0.45]	chr3	151278	118	INTRON	INTRON	SLC6A11	ENSG00000132164.10	ENST00000254488.7	protein_coding	protein_coding	protein_coding	protein_coding	1	558	2	6.88754	6.96049	7.03344	0.00288012	8.07303e-7	0.0341432	9.13634e-5
chr9	88406007	88406107	4177838	0	+	0.51	(0.485,0.523]	chr9	397315	162	INTRON	INTRON	SPIN1	ENSG00000106723.17	ENST00000485804.5:ENST00000469017.6:ENST00000375859.4:ENST00000462844.5:ENST00000485565.6:ENST00000483785.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	192	2	6.92726	6.959695	6.99213	0.00186327	5.25088e-5	0.0269723	0.00170211
chr2	3503088	3503187	1081956	0	-	0.494949	(0.485,0.523]	chr2	117683	17	INTRON	INTRON	ADI1	ENSG00000182551.14	ENST00000327435.11:ENST00000382093.5	protein_coding	protein_coding	protein_coding	protein_coding	0	204	2	6.35532	6.959095	7.56287	0.00545609	8.79998e-6	0.0486984	4.68141e-4
chr15	74416279	74416376	6319062	0	-	0.525773	(0.523,0.58]	chr15	623108	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SEMA7A	ENSG00000138623.10	ENST00000261918.9:ENST00000542748.6:ENST00000543145.6	protein_coding	protein_coding	protein_coding	protein_coding	0	192	2	6.9483	6.958715	6.96913	0.0017332	5.65196e-5	0.0257605	0.00179471
chr1	17674585	17674684	54957	0	+	0.535354	(0.523,0.58]	chr1	5603	96	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	711	2	5.42348	6.958114999999999	8.49275	2.2269e-4	3.78188e-7	0.00844783	5.51827e-5
chr22	23640923	23641022	7771163	0	-	0.434343	(0.419,0.45]	chr22	815019	1	INTRON	INTRON	GUSBP11	ENSG00000228315.12	ENST00000422506.5:ENST00000445682.2:ENST00000452737.5:ENST00000451837.5:ENST00000455485.5:ENST00000430357.4	lncRNA	lncRNA	lncRNA	lncRNA	0	200	2	6.61339	6.957875	7.30236	0.0059347	4.85572e-5	0.0506158	0.00161039
chr14	59192066	59192166	5829909	0	+	0.45	(0.419,0.45]	chr14	570362	29	INTRON	INTRON	DAAM1	ENSG00000100592.16	ENST00000556596.1:ENST00000360909.8:ENST00000556135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	198	2	6.88226	6.95785	7.03344	0.00288012	1.58518e-4	0.0341432	0.00384084
chr17	77484427	77484527	6805226	0	+	0.5	(0.485,0.523]	chr17	686821	4	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	201	2	6.6014	6.9577100000000005	7.31402	8.70042e-4	1.68998e-4	0.0175759	0.0040111
chr5	1328009	1328107	2609095	0	-	0.510204	(0.485,0.523]	chr5	259719	17	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	207	2	6.29006	6.957225	7.62439	0.00613935	7.22501e-6	0.0517628	4.09005e-4
chr4	17883621	17883719	2205066	0	-	0.397959	(0.39,0.419]	chr4	223017	32	UTR3	UTR3:EXON_MRNA:INTRON	LCORL	ENSG00000178177.17	ENST00000635767.2:ENST00000326877.8:ENST00000675131.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000510121.5:ENST00000675927.1:ENST00000382224.5:ENST00000382226.5:ENST00000676061.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	199	2	6.77224	6.95706	7.14188	0.00199601	1.86459e-4	0.0280662	0.00431276
chr4	169255625	169255725	2363958	0	-	0.46	(0.45,0.485]	chr4	235900	986	INTRON	INTRON	SH3RF1	ENSG00000154447.15	ENST00000284637.14:ENST00000508685.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	193	2	6.82995	6.9568449999999995	7.08374	0.00267274	5.00903e-5	0.0327654	0.00164756
chr10	114434279	114434378	4762106	0	-	0.464646	(0.45,0.485]	chr10	455500	33	UTR3	UTR3:EXON_MRNA	ABLIM1	ENSG00000099204.21	ENST00000533213.7:ENST00000392955.7:ENST00000392952.7	protein_coding	protein_coding	protein_coding	protein_coding	4	2078	2	6.79851	6.956675000000001	7.11484	1.48063e-5	3.75938e-8	0.00222214	1.23719e-5
chr15	84996838	84996938	6174742	0	+	0.42	(0.419,0.45]	chr15	607383	141	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	197	2	6.94586	6.956355	6.96685	0.00323624	1.32913e-4	0.0363264	0.00337193
chr10	127260525	127260625	4610532	0	+	0.52	(0.485,0.523]	chr10	440799	27	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2:ENST00000484400.5:ENST00000464466.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	443	2	6.45277	6.9562	7.45963	6.49227e-4	1.28513e-6	0.0149631	1.23615e-4
chr12	2835252	2835351	5156746	0	+	0.666667	(0.58,1]	chr12	501120	40	INTRON	INTRON	ITFG2	ENSG00000111203.13	ENST00000644123.1:ENST00000644517.1:ENST00000645513.1:ENST00000643039.1:ENST00000552005.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	188	2	6.76083	6.9538	7.14677	4.73371e-4	4.22142e-5	0.0125708	0.0014546
chr15	85009030	85009130	6174864	0	+	0.46	(0.45,0.485]	chr15	607383	263	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	725	2	5.40841	6.95298	8.49755	2.74537e-4	5.77697e-7	0.00943643	7.27846e-5
chr10	79220373	79220473	4533565	0	+	0.69	(0.58,1]	chr10	432457	37	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	185	2	6.90577	6.952945	7.00012	6.58123e-4	2.60624e-5	0.0150669	0.00101533
chr7	112204901	112205001	3692557	0	-	0.4	(0.39,0.419]	chr7	354969	2004	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	201	2	6.68119	6.95282	7.22445	0.00171592	2.39806e-4	0.025659	0.00516473
chr14	30573434	30573534	5769409	0	+	0.38	(0.36,0.39]	chr14	565792	122	INTRON	INTRON	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000438909.6:ENST00000544007.5:ENST00000550944.5:ENST00000552488.1:ENST00000648008.1:ENST00000553504.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	437	2	5.98388	6.952775	7.92167	4.45045e-4	1.10055e-5	0.0121471	5.52474e-4
chr8	143607478	143607561	4097297	0	-	0.506024	(0.485,0.523]	chr8	389389	4	SS3_PROX	SS3_PROX:INTRON	PYCR3	ENSG00000104524.14	ENST00000495276.6:ENST00000220966.10:ENST00000447926.6:ENST00000433751.5:ENST00000377579.7:ENST00000462036.5:ENST00000482616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	200	2	6.41776	6.9526900000000005	7.48762	0.00486906	1.11881e-5	0.0456282	5.5674e-4
chr16	431217	431317	6366841	0	+	0.4	(0.39,0.419]	chr16	627760	41	INTRON	INTRON	RAB11FIP3	ENSG00000090565.17	ENST00000262305.9:ENST00000434585.5	protein_coding	protein_coding	protein_coding	protein_coding	0	197	2	6.65568	6.952255	7.24883	0.00475491	4.80774e-5	0.0450109	0.00160016
chr4	1324984	1325081	1995288	0	+	0.536082	(0.523,0.58]	chr4	203264	10	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	196	2	6.51574	6.952035	7.38833	0.00409625	1.43066e-5	0.0413652	6.59187e-4
chr12	122021992	122022091	5342969	0	+	0.808081	(0.58,1]	chr12	521826	27	UTR5	UTR5:EXON_MRNA	BCL7A	ENSG00000110987.9	ENST00000538010.5:ENST00000261822.5:ENST00000432926.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	212	2	6.06599	6.95192	7.83785	0.00477081	1.0051e-6	0.0450109	1.05275e-4
chr1	214531433	214531531	659731	0	-	0.44898	(0.419,0.45]	chr1	77702	33	EXON_LNCRNA	EXON_LNCRNA:INTRON	PTPN14	ENSG00000152104.12	ENST00000366956.10:ENST00000543945.5:ENST00000486173.1:ENST00000491277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	196	2	6.91127	6.951525	6.99178	0.00356503	1.16955e-4	0.0383188	0.00308693
chr3	53828158	53828257	1785001	0	-	0.393939	(0.39,0.419]	chr3	186100	37	INTRON	INTRON	CHDH	ENSG00000016391.11	ENST00000315251.11:ENST00000481668.5:ENST00000467802.1	protein_coding	protein_coding	protein_coding	protein_coding	1	530	2	5.51298	6.9511	8.38922	7.17821e-4	1.54185e-6	0.0158219	1.39444e-4
chr2	11585374	11585469	720732	0	+	0.431579	(0.419,0.45]	chr2	84146	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000263834.9:ENST00000381483.6:ENST00000234142.9	protein_coding	protein_coding	protein_coding	protein_coding	3	714	2	5.25506	6.950285	8.64551	1.45919e-4	1.38687e-5	0.0067436	6.45948e-4
chr12	132779799	132779898	5540249	0	-	0.59596	(0.58,1]	chr12	546769	16	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	391	2	5.70228	6.950045	8.19781	4.02891e-5	6.74301e-6	0.00352981	3.901e-4
chr10	18566361	18566461	4642392	0	-	0.41	(0.39,0.419]	chr10	443321	140	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	206	2	6.54321	6.94953	7.35585	0.00134625	3.49364e-4	0.0224436	0.00675348
chr16	618760	618859	6368581	0	+	0.565657	(0.523,0.58]	chr16	628044	1	INTRON	INTRON	RAB40C	ENSG00000197562.10	ENST00000535977.5:ENST00000569575.5:ENST00000539661.5:ENST00000566290.5:ENST00000248139.8:ENST00000568586.5:ENST00000538492.5:ENST00000565511.5:ENST00000509637.6:ENST00000563109.1:ENST00000564703.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	192	2	6.84845	6.949315	7.05018	0.00148008	7.65992e-5	0.023604	0.00224403
chr16	84757418	84757518	6514406	0	+	0.36	(0.33,0.36]	chr16	646296	114	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000563892.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	193	2	6.82773	6.9491700000000005	7.07061	0.0028048	6.56944e-5	0.0336304	0.00200093
chr2	215974708	215974808	1369030	0	-	0.44	(0.419,0.45]	chr2	145838	272	INTRON	INTRON	MREG	ENSG00000118242.16	ENST00000263268.11:ENST00000620139.4:ENST00000439791.5:ENST00000424992.5:ENST00000420348.1	protein_coding	protein_coding	protein_coding	protein_coding	0	200	2	6.728	6.94897	7.16994	0.00226312	2.41873e-4	0.0300628	0.00518926
chr2	235802787	235802886	1065638	0	+	0.464646	(0.45,0.485]	chr2	115712	29	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	194	2	6.81414	6.94741	7.08068	0.00166658	1.11424e-4	0.0252632	0.00297888
chr17	77483032	77483131	6805212	0	+	0.616162	(0.58,1]	chr17	686820	8	EXON_MRNA	EXON_MRNA:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	185	2	6.85311	6.94736	7.04161	5.99793e-4	3.10807e-5	0.0143535	0.00115612
chr19	6190793	6190890	7321014	0	-	0.453608	(0.45,0.485]	chr19	756035	12	EXON_LNCRNA	EXON_LNCRNA:INTRON	RFX2	ENSG00000087903.13	ENST00000592883.5:ENST00000589712.1:ENST00000585324.1:ENST00000587700.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	202	2	6.56752	6.94722	7.32692	0.00103756	2.2698e-4	0.019365	0.00495264
chr18	13445143	13445241	7025027	0	+	0.540816	(0.523,0.58]	chr18	717583	9	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000610087.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	198	2	6.62527	6.9472000000000005	7.26913	9.60886e-4	1.49357e-4	0.0185615	0.00367368
chr7	78061381	78061481	3612553	0	-	0.53	(0.523,0.58]	chr7	348990	214	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000628980.2:ENST00000419488.5:ENST00000629359.2:ENST00000535697.5:ENST00000637441.1:ENST00000626691.2:ENST00000522391.3:ENST00000637585.1:ENST00000635961.1:ENST00000637976.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	206	2	6.45466	6.946965	7.43927	6.83398e-4	2.45921e-4	0.0153809	0.00524396
chr20	58695291	58695391	7498636	0	+	0.48	(0.45,0.485]	chr20	782002	3	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	510	2	5.41256	6.946865000000001	8.48117	6.8012e-4	6.09502e-7	0.015338	7.54968e-5
chr17	72557225	72557325	6963883	0	-	0.49	(0.485,0.523]	chr17	710389	228	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	448	2	6.51422	6.946225	7.37823	7.64953e-4	1.04614e-6	0.0163688	1.07327e-4
chr2	11789445	11789543	722493	0	+	0.510204	(0.485,0.523]	chr2	84431	6	INTRON	INTRON	LPIN1	ENSG00000134324.12	ENST00000449576.6:ENST00000425416.6:ENST00000396097.5:ENST00000396099.5:ENST00000256720.6:ENST00000674199.1:ENST00000404113.6:ENST00000464953.2:ENST00000454151.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	190	2	6.83875	6.9459	7.05305	0.00220993	4.35721e-5	0.0295736	0.00149008
chr10	48040536	48040636	4680771	0	-	0.46	(0.45,0.485]	chr10	446508	11	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	1	424	2	6.10487	6.944875	7.78488	4.20312e-4	5.07786e-6	0.011772	3.19403e-4
chr1	230107530	230107630	359822	0	+	0.4	(0.39,0.419]	chr1	40627	156	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	199	2	6.69986	6.94475	7.18964	0.00182908	2.27791e-4	0.0266451	0.00496195
chr9	124496124	124496223	4402686	0	-	0.434343	(0.419,0.45]	chr9	419817	26	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	0	195	2	6.8826599999999996	6.944715	7.00677	0.00374639	1.1216e-4	0.0393941	0.00298349
chr10	132712153	132712252	4618589	0	+	0.50505	(0.485,0.523]	chr10	441181	13	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000487614.1:ENST00000498337.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	190	2	6.91288	6.94468	6.97648	0.00191584	5.50755e-5	0.0274102	0.00176017
chr2	3220341	3220441	1080304	0	-	0.41	(0.39,0.419]	chr2	117609	57	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000482570.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	207	2	6.33308	6.94459	7.5561	0.00825437	1.94807e-5	0.0609913	8.25524e-4
chr3	188240362	188240462	1652662	0	+	0.45	(0.419,0.45]	chr3	173753	2	SS5_PROX	SS5_PROX:INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	1	543	2	5.18501	6.94452	8.70403	0.00153816	7.33361e-7	0.0242311	8.52572e-5
chr5	140648007	140648093	2552837	0	+	0.511628	(0.485,0.523]	chr5	253515	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IK	ENSG00000113141.19	ENST00000513256.5:ENST00000417647.7:ENST00000503332.5:ENST00000508301.5:ENST00000507593.5:ENST00000523672.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	663	2	5.29604	6.944345	8.59265	6.12032e-5	5.66364e-6	0.00434406	3.45133e-4
chr21	45500439	45500538	7631309	0	+	0.585859	(0.58,1]	chr21	797812	24	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	0	187	2	6.74164	6.944205	7.14677	4.73371e-4	4.4971e-5	0.0125708	0.00152119
chr5	302279	302379	2377945	0	+	0.62	(0.58,1]	chr5	237467	255	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	187	2	6.74164	6.944205	7.14677	4.73371e-4	4.4971e-5	0.0125708	0.00152119
chr2	74878387	74878487	837480	0	+	0.56	(0.523,0.58]	chr2	94646	3	SS3_PROX	SS3_PROX:INTRON	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1	protein_coding	protein_coding	protein_coding	protein_coding	0	222	2	6.2084	6.9437	7.679	4.95211e-4	4.19964e-4	0.011772	0.00865935
chr16	4082470	4082570	6541455	0	-	0.54	(0.523,0.58]	chr16	650517	284	INTRON	INTRON	ADCY9	ENSG00000162104.10	ENST00000294016.8:ENST00000571467.1:ENST00000572288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	498	2	5.44486	6.943565	8.44227	5.48061e-4	4.4844e-7	0.0136476	6.18848e-5
chr22	28927780	28927880	7705719	0	+	0.4	(0.39,0.419]	chr22	806321	99	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7:ENST00000402174.5	protein_coding	protein_coding	protein_coding	protein_coding	0	194	2	6.77006	6.943065	7.11607	0.00389104	7.0555e-5	0.0402085	0.00211635
chr18	48846910	48847009	7059747	0	+	0.434343	(0.419,0.45]	chr18	720358	292	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000587860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	200	2	6.52358	6.94272	7.36186	0.00689831	4.09247e-5	0.0553728	0.00142036
chr16	74927683	74927782	6643573	0	-	0.464646	(0.45,0.485]	chr16	664271	33	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000569549.5:ENST00000536050.5:ENST00000568462.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	196	2	6.70552	6.94251	7.1795	0.00137948	1.52809e-4	0.0226729	0.00372909
chr11	130298790	130298890	5147027	0	-	0.43	(0.419,0.45]	chr11	500236	365	INTRON	INTRON	ZBTB44	ENSG00000196323.14	ENST00000357899.9:ENST00000527478.6:ENST00000445008.6:ENST00000525842.5:ENST00000397753.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	200	2	6.69136	6.942395	7.19343	0.00217056	2.67131e-4	0.029243	0.00557451
chr3	131467197	131467295	1915889	0	-	0.469388	(0.45,0.485]	chr3	194715	40	INTRON	INTRON	MRPL3	ENSG00000114686.9	ENST00000264995.8:ENST00000511168.5:ENST00000510043.1:ENST00000425847.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	193	2	6.81414	6.94099	7.06784	0.00170784	1.11424e-4	0.025659	0.00297888
chr14	75813224	75813324	5888936	0	+	0.47	(0.45,0.485]	chr14	575180	96	INTRON	INTRON	TTLL5	ENSG00000119685.20	ENST00000298832.14:ENST00000557636.5:ENST00000556893.5:ENST00000554510.5:ENST00000555018.3:ENST00000608522.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	210	2	6.39173	6.940785	7.48984	7.54635e-4	3.72107e-4	0.0162304	0.00707906
chr22	32813525	32813625	7792794	0	-	0.44	(0.419,0.45]	chr22	817442	1833	INTRON	INTRON	SYN3	ENSG00000185666.15	ENST00000358763.7:ENST00000462268.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	195	2	6.74638	6.940735	7.13509	0.00473615	7.8188e-5	0.0449264	0.00227541
chr1	1108165	1108264	380264	0	-	0.585859	(0.58,1]	chr1	42816	9	INTRON	INTRON	C1orf159	ENSG00000131591.18	ENST00000379339.5:ENST00000379325.7:ENST00000421241.7:ENST00000467751.5:ENST00000477196.5:ENST00000434641.5:ENST00000482816.5:ENST00000462097.5:ENST00000475119.5:ENST00000472741.5:ENST00000480643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	196	2	6.28914	6.940685	7.59223	0.00303562	2.42364e-6	0.0350226	1.89851e-4
chr8	38381731	38381798	3967580	0	-	0.58209	(0.58,1]	chr8	379201	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5:ENST00000316985.7:ENST00000534155.1	protein_coding	protein_coding	protein_coding	protein_coding	0	196	2	6.48899	6.94004	7.39109	2.70977e-4	1.02074e-4	0.00934214	0.00277572
chr10	129560985	129561085	4613418	0	+	0.58	(0.523,0.58]	chr10	440949	240	INTRON	INTRON	MGMT	ENSG00000170430.10	ENST00000306010.8:ENST00000482653.1:ENST00000651593.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	189	2	6.82302	6.939845	7.0566700000000004	0.00229691	4.04959e-5	0.0302623	0.00140723
chr2	24264620	24264719	1103768	0	-	0.40404	(0.39,0.419]	chr2	120492	25	INTRON	INTRON	ITSN2	ENSG00000198399.16	ENST00000355123.9:ENST00000361999.7:ENST00000406921.7	protein_coding	protein_coding	protein_coding	protein_coding	0	195	2	6.65568	6.939455000000001	7.22323	0.00475491	5.17845e-5	0.0450109	0.00168775
chr20	64269599	64269698	7511208	0	+	0.474747	(0.45,0.485]	chr20	783907	12	INTRON	INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609818.1	protein_coding	protein_coding	protein_coding	protein_coding	0	216	2	6.29509	6.93907	7.58305	6.27968e-4	4.85904e-4	0.0147128	0.00857996
chr10	119360550	119360649	4594853	0	+	0.555556	(0.523,0.58]	chr10	439173	336	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	189	2	6.89792	6.93901	6.9801	0.00198913	5.12704e-5	0.0279961	0.00167326
chr1	236008030	236008130	693168	0	-	0.4	(0.39,0.419]	chr1	81538	138	INTRON	INTRON	NID1	ENSG00000116962.15	ENST00000366595.7:ENST00000264187.7	protein_coding	protein_coding	protein_coding	protein_coding	0	196	2	6.60375	6.93886	7.27397	0.00520388	4.46867e-5	0.0475031	0.00151523
chr14	70026844	70026943	5872651	0	+	0.414141	(0.39,0.419]	chr14	573363	30	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	0	203	2	6.56375	6.93856	7.31337	0.00145649	3.30465e-4	0.0234585	0.00649658
chr7	6700224	6700320	3542715	0	-	0.489583	(0.485,0.523]	chr7	342314	21	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000404360.5:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	0	196	2	6.64163	6.938465	7.2353	0.00101791	1.50187e-4	0.0191524	0.0036849
chr16	1727450	1727549	6371210	0	+	0.515152	(0.485,0.523]	chr16	628837	24	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000685565.1:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	189	2	6.86886	6.93823	7.0076	0.00208565	5.00839e-5	0.0287557	0.00164756
chr3	136299550	136299648	1574574	0	+	0.316327	(0.29,0.33]	chr3	167002	11	INTRON	INTRON	PCCB	ENSG00000114054.14	ENST00000251654.9:ENST00000490504.5:ENST00000483687.5:ENST00000468777.5:ENST00000462637.5:ENST00000466072.5:ENST00000484181.5:ENST00000482086.5:ENST00000471595.5:ENST00000469217.5:ENST00000478469.5:ENST00000474833.5:ENST00000475214.5:ENST00000473073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	189	2	6.79928	6.938215	7.07715	0.00208507	4.44623e-5	0.0287557	0.00150854
chr21	37367057	37367152	7618969	0	+	0.663158	(0.58,1]	chr21	796005	4	UTR5	UTR5:EXON_MRNA:INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1	protein_coding	protein_coding	protein_coding	protein_coding	3	739	2	4.88706	6.9380749999999995	8.98909	1.91049e-4	1.40491e-8	0.00779591	6.59076e-6
chr16	4082870	4082970	6541459	0	-	0.48	(0.45,0.485]	chr16	650517	288	INTRON	INTRON	ADCY9	ENSG00000162104.10	ENST00000294016.8:ENST00000571467.1:ENST00000572288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	191	2	6.73566	6.938065	7.14047	0.00318291	4.22229e-5	0.0360488	0.0014546
chr3	172220174	172220274	1629278	0	+	0.39	(0.36,0.39]	chr3	170570	330	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	193	2	6.78705	6.937805	7.08856	0.00367488	7.55582e-5	0.0389784	0.00222665
chr12	132534460	132534560	5352960	0	+	0.65	(0.58,1]	chr12	523670	61	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	185	2	6.57947	6.937754999999999	7.29604	0.00165065	6.86847e-6	0.0250898	3.9491e-4
chr16	84735970	84736069	6514189	0	+	0.646465	(0.58,1]	chr16	646283	21	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	387	2	5.70228	6.937705	8.17313	4.27594e-5	6.74301e-6	0.00362006	3.901e-4
chr7	152201245	152201344	3735102	0	-	0.444444	(0.419,0.45]	chr7	359094	14	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000679645.1:ENST00000683254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	199	2	6.69136	6.936545000000001	7.18173	0.00221619	2.67131e-4	0.0295806	0.00557451
chr11	122744497	122744597	4958989	0	+	0.48	(0.45,0.485]	chr11	479003	170	INTRON	INTRON	UBASH3B	ENSG00000154127.10	ENST00000284273.6:ENST00000526386.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	269	2	5.57854	6.93617	8.2938	0.0230065	1.12245e-6	0.102982	1.12275e-4
chr2	149614132	149614232	920087	0	+	0.49	(0.485,0.523]	chr2	102788	197	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	2	553	2	5.68178	6.93556	8.18934	1.43895e-4	3.49254e-6	0.00669515	2.45572e-4
chr5	79398334	79398433	2709374	0	-	0.30303	(0.29,0.33]	chr5	266906	3	INTRON	INTRON	HOMER1	ENSG00000152413.15	ENST00000334082.11:ENST00000282260.10:ENST00000508576.5:ENST00000535690.1	protein_coding	protein_coding	protein_coding	protein_coding	0	191	2	6.78677	6.935169999999999	7.08357	0.00118668	1.06391e-4	0.0208412	0.00287034
chr3	37862977	37863077	1443273	0	+	0.49	(0.485,0.523]	chr3	153956	3	INTRON	INTRON	CTDSPL	ENSG00000144677.15	ENST00000273179.10:ENST00000443503.6:ENST00000435525.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	503	2	5.71321	6.934475	8.15574	3.11018e-4	1.27613e-6	0.0100453	1.23031e-4
chr6	10589213	10589313	2850439	0	+	0.46	(0.45,0.485]	chr6	278695	19	INTRON	INTRON	GCNT2	ENSG00000111846.20	ENST00000410107.5:ENST00000489225.5:ENST00000397423.7:ENST00000495262.7:ENST00000475577.5:ENST00000489819.5:ENST00000474518.1:ENST00000379597.7:ENST00000485764.1:ENST00000461400.1:ENST00000316170.9:ENST00000459872.1:ENST00000265012.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	190	2	6.90408	6.933595	6.96311	0.00232708	7.18212e-5	0.0303784	0.00214399
chr3	58010155	58010255	1483055	0	+	0.55	(0.523,0.58]	chr3	159572	9	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	200	2	6.52102	6.933535	7.34605	8.24125e-4	2.02818e-4	0.0170688	0.0045746
chr10	79114418	79114518	4532499	0	+	0.56	(0.523,0.58]	chr10	432420	448	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	194	2	6.66495	6.93236	7.19977	0.00110271	1.32802e-4	0.020005	0.00337193
chr1	78132611	78132710	165134	0	+	0.363636	(0.36,0.39]	chr1	18816	63	INTRON	INTRON	GIPC2	ENSG00000137960.6	ENST00000370759.4	protein_coding	protein_coding	protein_coding	protein_coding	0	215	2	6.32052	6.932024999999999	7.54353	9.16418e-4	6.27541e-4	0.0180726	0.0102323
chr20	46724640	46724740	7488452	0	+	0.47	(0.45,0.485]	chr20	780624	2	SS3_PROX	SS3_PROX:INTRON	SLC2A10	ENSG00000197496.6	ENST00000359271.4:ENST00000611837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	196	2	6.64799	6.93144	7.21489	0.00128871	1.80357e-4	0.0219081	0.00419938
chr15	68182356	68182452	6141791	0	+	0.479167	(0.45,0.485]	chr15	604134	6	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000249636.11:ENST00000545237.1:ENST00000563996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	435	2	5.46124	6.931285	8.40133	1.20167e-4	3.87032e-5	0.00607292	0.00135871
chr6	3145560	3145659	2828594	0	+	0.616162	(0.58,1]	chr6	277604	47	INTRON	INTRON	BPHL	ENSG00000137274.13	ENST00000434640.5:ENST00000430655.6:ENST00000424847.6:ENST00000433912.5:ENST00000380379.10:ENST00000490918.5:ENST00000380375.4:ENST00000488487.2:ENST00000423798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	198	2	6.41826	6.9309449999999995	7.44363	2.40019e-4	1.27804e-4	0.00875172	0.00328053
chr6	148537770	148537868	3034571	0	+	0.510204	(0.485,0.523]	chr6	296005	25	INTRON	INTRON	SASH1	ENSG00000111961.19	ENST00000367467.8	protein_coding	protein_coding	protein_coding	protein_coding	0	190	2	6.80995	6.93028	7.05061	0.00146547	9.11162e-5	0.023492	0.00255001
chr2	11483778	11483878	719698	0	+	0.45	(0.419,0.45]	chr2	84084	10	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000628795.2	protein_coding	protein_coding	protein_coding	protein_coding	0	193	2	6.79325	6.929235	7.06522	0.00437084	9.52125e-5	0.0428189	0.00262959
chr7	74529033	74529133	3392124	0	+	0.49	(0.485,0.523]	chr7	327389	45	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6:ENST00000476977.5:ENST00000489094.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	188	2	6.7606	6.92886	7.09712	0.00256606	3.80472e-5	0.0320885	0.00134128
chr1	8553282	8553382	393079	0	-	0.5	(0.485,0.523]	chr1	45029	116	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000469251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	408	2	5.92167	6.9286449999999995	7.93562	2.44592e-4	7.43044e-6	0.00884339	4.17372e-4
chr15	28652880	28652979	6068887	0	+	0.50505	(0.485,0.523]	chr15	596168	9	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	1	408	2	5.92167	6.9286449999999995	7.93562	2.44592e-4	7.43044e-6	0.00884339	4.17372e-4
chr7	47363284	47363383	3587424	0	-	0.434343	(0.419,0.45]	chr7	346030	166	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	193	2	6.91127	6.928565	6.94586	0.00356503	1.32913e-4	0.0383188	0.00337193
chr1	42181816	42181916	454989	0	-	0.51	(0.485,0.523]	chr1	54693	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000372571.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6	protein_coding	protein_coding	protein_coding	protein_coding	0	193	2	6.68077	6.9285499999999995	7.17633	0.00114421	1.33825e-4	0.0204418	0.00338739
chr13	72860252	72860352	5610556	0	+	0.4	(0.39,0.419]	chr13	552541	57	INTRON	INTRON	PIBF1	ENSG00000083535.16	ENST00000326291.11:ENST00000617689.4:ENST00000615625.1	protein_coding	protein_coding	protein_coding	protein_coding	0	205	2	6.47978	6.928205	7.37663	0.00129529	4.14458e-4	0.0219863	0.00767522
chr4	153487985	153488085	2151098	0	+	0.48	(0.45,0.485]	chr4	217962	137	INTRON	INTRON	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000445960.5:ENST00000409959.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	189	2	6.86006	6.927144999999999	6.99423	0.00252685	6.5472e-5	0.031696	0.00199814
chr16	4082670	4082770	6541457	0	-	0.57	(0.523,0.58]	chr16	650517	286	INTRON	INTRON	ADCY9	ENSG00000162104.10	ENST00000294016.8:ENST00000571467.1:ENST00000572288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	1067	2	6.65945	6.927115	7.19478	4.17885e-5	9.58984e-8	0.00359244	2.27161e-5
chr20	44405458	44405557	7482970	0	+	0.565657	(0.523,0.58]	chr20	779645	22	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	829	2	4.97837	6.926215	8.87406	3.39645e-5	6.68363e-6	0.00324013	3.876e-4
chr16	29270513	29270613	6433542	0	+	0.5	(0.485,0.523]	chr16	636745	184	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	1	547	2	6.12115	6.925965	7.73078	1.3131e-4	5.1276e-6	0.00635849	3.21808e-4
chr9	128890109	128890209	4248186	0	+	0.5	(0.485,0.523]	chr9	404114	36	INTRON	INTRON	LRRC8A	ENSG00000136802.12	ENST00000372600.9:ENST00000372599.7:ENST00000259324.5	protein_coding	protein_coding	protein_coding	protein_coding	0	189	2	6.8275	6.925795	7.02409	0.00154346	8.64447e-5	0.02427	0.00245611
chr16	12261042	12261142	6392479	0	+	0.61	(0.58,1]	chr16	631965	610	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	184	2	6.5414	6.925265	7.30913	0.00179018	6.56269e-6	0.0262802	3.8256e-4
chr4	94659437	94659537	2089766	0	+	0.47	(0.45,0.485]	chr4	213009	15	INTRON	INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000380176.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	189	2	6.91846	6.924885	6.93131	0.00226513	7.8924e-5	0.0300628	0.0022885
chr7	96220754	96220853	3642501	0	-	0.525253	(0.523,0.58]	chr7	350731	6	INTRON	INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000472162.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	187	2	6.83832	6.9247700000000005	7.01122	0.00223061	4.65929e-5	0.0297064	0.00156314
chr2	119765780	119765880	883649	0	+	0.37	(0.36,0.39]	chr2	100098	50	INTRON	INTRON	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000460162.1:ENST00000420482.5:ENST00000460289.5:ENST00000488279.6:ENST00000485247.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	191	2	6.84791	6.92439	7.00087	0.00329741	9.70744e-5	0.0368376	0.00267267
chr1	178113469	178113569	286731	0	+	0.49	(0.485,0.523]	chr1	32909	184	INTRON	INTRON	RASAL2	ENSG00000075391.18	ENST00000367649.8	protein_coding	protein_coding	protein_coding	protein_coding	0	188	2	6.69488	6.924365	7.15385	0.00290687	3.1927e-5	0.0342042	0.00117872
chr19	6229575	6229674	7321307	0	-	0.525253	(0.523,0.58]	chr19	756087	21	INTRON	INTRON	MLLT1	ENSG00000130382.9	ENST00000252674.9	protein_coding	protein_coding	protein_coding	protein_coding	0	187	2	6.79194	6.924305	7.0566700000000004	0.00243746	4.04959e-5	0.0311222	0.00140723
chr12	113241660	113241760	5333759	0	+	0.47	(0.45,0.485]	chr12	520480	143	INTRON	INTRON	TPCN1	ENSG00000186815.13	ENST00000552642.5:ENST00000547275.5:ENST00000552985.5:ENST00000550873.5:ENST00000551096.5:ENST00000551099.5:ENST00000552897.5:ENST00000550785.5:ENST00000335509.11:ENST00000549279.1:ENST00000552077.5:ENST00000541517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	204	2	6.43773	6.924205000000001	7.41068	8.81297e-4	3.27319e-4	0.0176886	0.00645438
chr2	87528715	87528815	847937	0	+	0.57	(0.523,0.58]	chr2	95749	73	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000642451.1:ENST00000644478.1:ENST00000409139.6:ENST00000644125.1:ENST00000643743.1:ENST00000643276.1:ENST00000409898.2:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000646636.1:ENST00000629257.1:ENST00000409054.2	lncRNA	lncRNA	lncRNA	lncRNA	1	407	2	6.04697	6.92404	7.80111	3.26821e-4	4.65711e-6	0.0102955	2.9987e-4
chr11	70720700	70720800	5061488	0	-	0.48	(0.45,0.485]	chr11	492701	28	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	194	2	6.66742	6.92346	7.1795	0.00137948	1.70557e-4	0.0226729	0.00403679
chr6	16390665	16390765	3100739	0	-	0.46	(0.45,0.485]	chr6	300842	618	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8	protein_coding	protein_coding	protein_coding	protein_coding	0	190	2	6.83147	6.92338	7.01529	0.00188703	1.05911e-4	0.0271069	0.00286061
chr8	133257263	133257363	4083869	0	-	0.45	(0.419,0.45]	chr8	388265	4	SS3_PROX	SS3_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000517331.5:ENST00000522377.5:ENST00000676444.1:ENST00000676222.1:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	1257	2	6.59344	6.923185	7.25293	5.59361e-5	4.38826e-5	0.00367146	0.00178124
chr2	121655605	121655705	888192	0	+	0.46	(0.45,0.485]	chr2	100466	27	INTRON	INTRON	NIFK-AS1	ENSG00000236859.8	ENST00000667483.1:ENST00000662168.1:ENST00000654001.1:ENST00000659307.1:ENST00000419902.3:ENST00000690074.1:ENST00000666647.1	lncRNA	lncRNA	lncRNA	lncRNA	1	439	2	5.38466	6.92307	8.46148	1.0616e-4	4.90008e-5	0.00576366	0.00162093
chr9	87547468	87547568	4175924	0	+	0.31	(0.29,0.33]	chr9	397141	221	INTRON	INTRON	DAPK1	ENSG00000196730.13	ENST00000358077.9:ENST00000469640.6:ENST00000472284.5:ENST00000469067.5:ENST00000408954.8:ENST00000622514.4:ENST00000496522.5:ENST00000472344.1:ENST00000491893.5:ENST00000489291.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	189	2	6.78677	6.92215	7.05753	0.00125031	1.06391e-4	0.0215229	0.00287034
chr14	105216065	105216163	6058158	0	-	0.479592	(0.45,0.485]	chr14	594783	28	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000392557.8:ENST00000446501.6:ENST00000635152.1:ENST00000547374.5:ENST00000551787.5:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	190	2	6.63477	6.921575	7.20838	0.00382972	3.43738e-5	0.0399078	0.00124793
chr2	240520633	240520733	1394641	0	-	0.53	(0.523,0.58]	chr2	149019	1	SS3_PROX	SS3_PROX:INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000405523.7	protein_coding	protein_coding	protein_coding	protein_coding	1	507	2	5.06605	6.921530000000001	8.77701	0.00118809	1.44061e-7	0.0208619	2.94679e-5
chr2	239348181	239348280	1392192	0	-	0.585859	(0.58,1]	chr2	148752	237	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	183	2	6.76083	6.921390000000001	7.08195	5.47872e-4	4.22142e-5	0.0136476	0.0014546
chr14	31162999	31163099	5952686	0	-	0.58	(0.523,0.58]	chr14	583296	53	INTRON	INTRON	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000691390.1:ENST00000553957.6:ENST00000687002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	543	2	5.35783	6.92119	8.48455	7.80938e-5	9.62764e-6	0.00492356	4.9905e-4
chr7	39697910	39698010	3351605	0	+	0.39	(0.36,0.39]	chr7	324082	4	SS5_PROX	SS5_PROX:INTRON	RALA	ENSG00000006451.8	ENST00000468201.1:ENST00000005257.7:ENST00000434466.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	191	2	6.90751	6.921075	6.93464	0.00282234	1.26468e-4	0.0337022	0.00325863
chr3	37793383	37793481	1738446	0	-	0.530612	(0.523,0.58]	chr3	179930	21	INTRON	INTRON	ITGA9-AS1	ENSG00000235257.10	ENST00000653023.1:ENST00000663634.1:ENST00000653850.1:ENST00000663533.1:ENST00000653285.1:ENST00000661580.1:ENST00000655095.1:ENST00000667507.1:ENST00000660790.1:ENST00000630762.3:ENST00000420870.6:ENST00000670835.1:ENST00000438136.5:ENST00000450990.5	lncRNA	lncRNA	lncRNA	lncRNA	0	211	2	6.28679	6.920835	7.55488	5.40881e-4	3.97355e-4	0.0135788	0.00741985
chr2	32439107	32439207	748593	0	+	0.38	(0.36,0.39]	chr2	87233	2	SS3_PROX	SS3_PROX:INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1:ENST00000444173.5:ENST00000431454.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	193	2	6.77281	6.92066	7.06851	0.00221433	1.84422e-4	0.0295806	0.00427863
chr13	113011866	113011966	5655742	0	+	0.66	(0.58,1]	chr13	555138	95	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	391	2	5.5469	6.919715	8.29253	3.20454e-5	1.16554e-5	0.00316089	5.73034e-4
chr10	18567760	18567860	4642406	0	-	0.36	(0.33,0.36]	chr10	443321	154	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	189	2	6.85784	6.919475	6.98111	0.00265287	8.52689e-5	0.0326475	0.00243134
chr15	31335453	31335553	6072936	0	+	0.64	(0.58,1]	chr15	596672	73	INTRON	INTRON	KLF13	ENSG00000169926.11	ENST00000307145.4:ENST00000558921.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	186	2	6.64169	6.91915	7.19661	4.22825e-4	6.2385e-5	0.011772	0.00192539
chr19	7119783	7119883	7323447	0	-	0.42	(0.419,0.45]	chr19	756715	2	SS3_PROX	SS3_PROX:INTRON	INSR	ENSG00000171105.14	ENST00000341500.9:ENST00000302850.10	protein_coding	protein_coding	protein_coding	protein_coding	0	195	2	6.728	6.9187449999999995	7.10949	0.00251897	2.41873e-4	0.031696	0.00518926
chr18	74915820	74915920	7092440	0	+	0.53	(0.523,0.58]	chr18	722466	100	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	187	2	6.86558	6.917355	6.96913	0.0017332	7.2723e-5	0.0257605	0.00216169
chr16	14317570	14317670	6401541	0	+	0.53	(0.523,0.58]	chr16	632294	78	INTRON	INTRON	MIR193BHG	ENSG00000262454.4	ENST00000634265.2:ENST00000570945.2:ENST00000668516.1:ENST00000641433.1:ENST00000641175.1	lncRNA	lncRNA	lncRNA	lncRNA	0	293	2	5.53665	6.917335	8.29802	0.00291382	1.15904e-4	0.0298557	0.00598993
chr9	137723458	137723558	4265525	0	+	0.67	(0.58,1]	chr9	407352	58	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000460486.3:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	180	2	6.70531	6.917104999999999	7.1289	0.00125905	1.22303e-5	0.0215793	5.9245e-4
chr16	50621101	50621201	6452139	0	+	0.58	(0.523,0.58]	chr16	639913	1	SS3_PROX	SS3_PROX:INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	0	192	2	6.4575	6.916964999999999	7.37643	0.0045605	1.48581e-5	0.0438198	6.80263e-4
chr7	127975373	127975473	3471481	0	+	0.5	(0.485,0.523]	chr7	335423	258	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	405	2	5.95615	6.916855	7.87756	2.75909e-4	6.63988e-6	0.00944319	3.85462e-4
chr2	665154	665252	1079796	0	-	0.520408	(0.485,0.523]	chr2	117536	14	UTR3	UTR3:EXON_MRNA	TMEM18	ENSG00000151353.15	ENST00000281017.8	protein_coding	protein_coding	protein_coding	protein_coding	0	191	2	6.49701	6.91676	7.33651	0.00420849	1.80479e-5	0.0421454	7.82415e-4
chr16	89304902	89305000	6659858	0	-	0.632653	(0.58,1]	chr16	666659	3	SS5_PROX	SS5_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	835	2	5.05031	6.916745	8.78318	9.66154e-6	1.60261e-6	0.00184763	1.43561e-4
chr18	74916419	74916519	7092446	0	+	0.52	(0.485,0.523]	chr18	722466	106	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	191	2	6.68077	6.916405	7.15204	0.00120048	1.33825e-4	0.0210159	0.00338739
chr3	134077111	134077211	1918577	0	-	0.45	(0.419,0.45]	chr3	195226	15	INTRON	INTRON	RYK	ENSG00000163785.13	ENST00000484106.3	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	584	2	6.04794	6.915685	7.78343	3.03481e-4	1.19326e-5	0.00989566	5.82737e-4
chr5	302478	302578	2377947	0	+	0.58	(0.523,0.58]	chr5	237467	257	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	194	2	6.58447	6.915425	7.24638	0.00100536	1.68436e-4	0.0190855	0.00400681
chr10	47534280	47534380	4680525	0	-	0.49	(0.485,0.523]	chr10	446443	104	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	0	192	2	6.45793	6.91537	7.37281	0.00452302	1.60973e-5	0.0436138	7.19583e-4
chr11	67242218	67242315	4879671	0	+	0.453608	(0.45,0.485]	chr11	469885	15	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000308783.9:ENST00000526258.5:ENST00000531696.5:ENST00000525041.5:ENST00000530342.2:ENST00000517637.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	200	2	6.4823	6.91531	7.34832	9.95275e-4	2.88849e-4	0.0189547	0.00590733
chr7	584307	584407	3523929	0	-	0.51	(0.485,0.523]	chr7	340377	4	SS5_PROX	SS5_PROX:INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000400758.6:ENST00000430040.5	protein_coding	protein_coding	protein_coding	protein_coding	0	186	2	6.85388	6.915179999999999	6.97648	0.00214661	5.50755e-5	0.0291055	0.00176017
chr7	143882417	143882508	3729985	0	-	0.549451	(0.523,0.58]	chr7	358299	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TCAF1	ENSG00000198420.10	ENST00000479870.6:ENST00000355951.2:ENST00000392900.3:ENST00000460532.5:ENST00000491908.1:ENST00000478172.1:ENST00000485416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	189	2	6.74117	6.91511	7.08905	0.00137158	1.05811e-4	0.0226056	0.00286061
chr10	79218673	79218773	4533548	0	+	0.53	(0.523,0.58]	chr10	432457	20	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	186	2	6.89792	6.915025	6.93213	0.00198913	5.9384e-5	0.0279961	0.00185705
chrX	120436197	120436296	8096602	0	-	0.393939	(0.39,0.419]	chrX	844120	44	INTRON	INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	191	2	6.84116	6.914735	6.98831	0.0026369	1.53866e-4	0.0325876	0.00374891
chr3	172671488	172671588	1959182	0	-	0.31	(0.29,0.33]	chr3	199166	230	INTRON	INTRON	NCEH1	ENSG00000144959.11	ENST00000475381.7:ENST00000538775.5:ENST00000543711.5:ENST00000424772.2:ENST00000421723.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	194	2	6.57545	6.9146	7.25375	8.4108e-4	1.9739e-4	0.0172456	0.0044853
chr3	129395337	129395431	1911571	0	-	0.478723	(0.45,0.485]	chr3	194158	12	INTRON	INTRON	RPL32P3	ENSG00000251474.7	ENST00000510078.5:ENST00000507287.5:ENST00000687239.1:ENST00000514355.5:ENST00000507238.5:ENST00000515866.5:ENST00000499631.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	188	2	6.88225	6.9145199999999996	6.94679	0.00214762	9.12292e-5	0.0291055	0.00255062
chr7	1071082	1071182	3526938	0	-	0.58	(0.523,0.58]	chr7	340585	159	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	187	2	6.64312	6.914075	7.18503	0.00323048	2.7167e-5	0.0362983	0.00104767
chr16	89304013	89304112	6659849	0	-	0.585859	(0.58,1]	chr16	666658	20	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	393	2	6.42556	6.913655	7.40175	2.64397e-4	4.90876e-7	0.00920003	6.56898e-5
chr12	100198743	100198843	5482593	0	-	0.49	(0.485,0.523]	chr12	539072	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000257489	ENSG00000257489.6	ENST00000550096.5:ENST00000548782.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	190	2	6.69995	6.9136500000000005	7.12735	0.00126041	1.26446e-4	0.0215793	0.00325863
chr17	28553568	28553661	6873728	0	-	0.397849	(0.39,0.419]	chr17	697106	3	UTR3	UTR3:EXON_MRNA	PIGS	ENSG00000087111.21	ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000492429.2:ENST00000487231.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	426	2	5.95714	6.9135100000000005	7.86988	5.1042e-4	1.20547e-5	0.0131229	5.86995e-4
chr13	46575502	46575602	5584129	0	+	0.48	(0.45,0.485]	chr13	550714	214	INTRON	INTRON	LRCH1	ENSG00000136141.15	ENST00000311191.10:ENST00000389797.8:ENST00000443945.6:ENST00000389798.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	422	2	5.54281	6.91344	8.28407	1.5288e-4	3.00597e-5	0.00689544	0.0011294
chr6	42640370	42640470	2914528	0	+	0.43	(0.419,0.45]	chr6	286101	1	SS5_PROX	SS5_PROX:INTRON	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2	protein_coding	protein_coding	protein_coding	protein_coding	0	191	2	6.91127	6.91284	6.91441	0.00356503	1.45031e-4	0.0383188	0.00359413
chr12	54339962	54340062	5237066	0	+	0.52	(0.485,0.523]	chr12	509138	1	SS3_PROX	SS3_PROX:INTRON	COPZ1	ENSG00000111481.10	ENST00000552848.5:ENST00000548076.5:ENST00000553009.5:ENST00000549043.5:ENST00000262061.7:ENST00000552218.5:ENST00000551962.5:ENST00000550171.5:ENST00000455864.6:ENST00000552362.5:ENST00000553231.5:ENST00000550027.5:ENST00000551412.5:ENST00000549116.5:ENST00000551779.5:ENST00000548281.5:ENST00000548753.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	193	2	6.6014	6.9125499999999995	7.2237	0.00104165	1.68998e-4	0.0193905	0.0040111
chr9	134369275	134369375	4261116	0	+	0.58	(0.523,0.58]	chr9	406311	423	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	192	2	6.62527	6.912520000000001	7.19977	0.00110271	1.49357e-4	0.020005	0.00367368
chr7	2042217	2042317	3530654	0	-	0.56	(0.523,0.58]	chr7	340995	272	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	187	2	6.6256	6.912105	7.19861	0.00333843	2.60365e-5	0.0368376	0.00101533
chr2	239280578	239280677	1391514	0	-	0.636364	(0.58,1]	chr2	148740	290	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	179	2	6.88324	6.9115400000000005	6.93984	8.53086e-4	2.32442e-5	0.0173632	9.36605e-4
chr16	58539267	58539340	6598969	0	-	0.452055	(0.45,0.485]	chr16	659987	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000568917.1:ENST00000563283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	189	2	6.77883	6.910315000000001	7.0418	0.00179449	1.23522e-4	0.0262815	0.00321265
chr7	2278805	2278904	3532964	0	-	0.626263	(0.58,1]	chr7	341203	1	INTRON	INTRON	SNX8	ENSG00000106266.11	ENST00000222990.8:ENST00000435060.5:ENST00000457286.5:ENST00000435336.5:ENST00000494722.1:ENST00000447136.1:ENST00000419693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	179	2	6.90577	6.909565000000001	6.91336	7.98131e-4	2.60624e-5	0.0167692	0.00101533
chr4	153488085	153488185	2151099	0	+	0.55	(0.523,0.58]	chr4	217962	138	INTRON	INTRON	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000445960.5:ENST00000409959.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	185	2	6.82302	6.909385	6.99575	0.00229691	4.88649e-5	0.0302623	0.00161739
chr6	147865304	147865404	3030822	0	+	0.45	(0.419,0.45]	chr6	295875	1279	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	1	430	2	5.9342	6.9089849999999995	7.88377	6.1673e-4	1.48612e-5	0.0145945	6.80263e-4
chrX	2224628	2224727	7966084	0	-	0.40404	(0.39,0.419]	chrX	834328	30	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11	protein_coding	protein_coding	protein_coding	protein_coding	0	193	2	6.69986	6.908625000000001	7.11739	0.00208713	2.27791e-4	0.0287557	0.00496195
chr11	64306580	64306668	4868819	0	+	0.602273	(0.58,1]	chr11	467348	5	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ESRRA	ENSG00000173153.17	ENST00000406310.6:ENST00000000442.11:ENST00000677967.1:ENST00000539594.5:ENST00000405666.5:ENST00000468670.2	protein_coding	protein_coding	protein_coding	protein_coding	1	373	2	6.05932	6.908505	7.75769	1.15206e-4	1.87507e-6	0.00597643	1.59448e-4
chr2	127333187	127333286	1265103	0	-	0.494949	(0.485,0.523]	chr2	136349	23	INTRON	INTRON	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5:ENST00000344908.9	protein_coding	protein_coding	protein_coding	protein_coding	1	405	2	5.71975	6.908355	8.09696	1.74681e-4	1.42933e-5	0.00740488	6.59187e-4
chr9	135837064	135837163	4431117	0	-	0.484848	(0.45,0.485]	chr9	423507	91	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	202	2	6.23609	6.90832	7.58055	0.00778782	1.09169e-5	0.0590114	5.4861e-4
chr10	87335014	87335114	4724508	0	-	0.36	(0.33,0.36]	chr10	450936	2	SS3_PROX	SS3_PROX:INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6:ENST00000433530.7:ENST00000688257.1:ENST00000433920.5:ENST00000687925.1:ENST00000666515.2:ENST00000688926.1:ENST00000447424.6:ENST00000690598.1:ENST00000663113.1:ENST00000667520.2:ENST00000693252.1:ENST00000687827.1:ENST00000687141.1:ENST00000654503.2:ENST00000655272.2:ENST00000668676.1:ENST00000653080.1:ENST00000690287.1:ENST00000413722.6:ENST00000653238.1:ENST00000660454.1:ENST00000688790.1:ENST00000660726.2:ENST00000417860.7:ENST00000686862.1:ENST00000413961.5:ENST00000686013.1:ENST00000458739.1:ENST00000667985.2:ENST00000691822.1:ENST00000664997.1:ENST00000662586.1:ENST00000656123.1:ENST00000366446.5	lncRNA	lncRNA	lncRNA	lncRNA	0	194	2	6.6152	6.90808	7.20096	0.00139094	2.41669e-4	0.022808	0.00518926
chr10	70070924	70071023	4503506	0	+	0.515152	(0.485,0.523]	chr10	430825	37	INTRON	INTRON	MACROH2A2	ENSG00000099284.15	ENST00000677255.1:ENST00000676683.1:ENST00000676699.1:ENST00000677659.1:ENST00000676609.1:ENST00000676923.1:ENST00000373255.9:ENST00000679349.1:ENST00000455786.1:ENST00000676608.1:ENST00000676692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	185	2	6.80799	6.907795	7.0076	0.0023441	5.00839e-5	0.0305023	0.00164756
chr4	8206809	8206907	2014080	0	+	0.408163	(0.39,0.419]	chr4	205512	8	INTRON	INTRON	SH3TC1	ENSG00000125089.18	ENST00000510763.5:ENST00000508641.2:ENST00000245105.8:ENST00000506360.5:ENST00000502669.5:ENST00000515682.5:ENST00000457650.7:ENST00000503284.5:ENST00000684698.1:ENST00000684537.1:ENST00000682056.1:ENST00000682862.1:ENST00000507891.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	432	2	5.53949	6.90775	8.27601	2.32712e-4	4.23938e-5	0.0086261	0.00145737
chr4	153488185	153488285	2151100	0	+	0.49	(0.485,0.523]	chr4	217962	139	INTRON	INTRON	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000445960.5:ENST00000409959.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	185	2	6.79237	6.907640000000001	7.02291	0.00241519	4.77916e-5	0.0309229	0.00159602
chr1	17675983	17676083	54971	0	+	0.58	(0.523,0.58]	chr1	5603	110	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	520	2	5.9644	6.9076	7.8508	1.84887e-4	3.21028e-6	0.00766974	2.30506e-4
chr1	23392782	23392881	424243	0	-	0.50505	(0.485,0.523]	chr1	49807	50	INTRON	INTRON	TCEA3	ENSG00000204219.11	ENST00000450454.7:ENST00000476978.2	protein_coding	protein_coding	protein_coding	protein_coding	0	188	2	6.55373	6.907385	7.26104	0.00378829	2.28684e-5	0.0396337	9.27248e-4
chr19	18467506	18467605	7347866	0	-	0.50505	(0.485,0.523]	chr19	761486	12	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	201	2	6.40505	6.907170000000001	7.40929	7.18613e-4	2.98099e-4	0.0158219	0.00604717
chr21	43974866	43974965	7625540	0	+	0.494949	(0.485,0.523]	chr21	796959	30	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000398063.6:ENST00000398058.5:ENST00000546158.1:ENST00000479117.5:ENST00000467358.5:ENST00000484865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	187	2	6.59033	6.9060500000000005	7.22177	0.00353829	2.58512e-5	0.0381878	0.0010125
chr2	239345284	239345383	1392163	0	-	0.565657	(0.523,0.58]	chr2	148752	208	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	188	2	6.72249	6.90577	7.08905	0.00137158	1.11891e-4	0.0226056	0.00298349
chr12	132537248	132537347	5352988	0	+	0.585859	(0.58,1]	chr12	523670	89	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	178	2	6.82104	6.90526	6.98948	9.78215e-4	1.96603e-5	0.0187475	8.29491e-4
chr8	700095	700195	3932730	0	-	0.73	(0.58,1]	chr8	376054	71	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000524138.5:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	178	2	6.77258	6.90502	7.03746	0.00108768	1.67087e-5	0.0198535	7.38685e-4
chr4	3368282	3368382	2005119	0	+	0.52	(0.485,0.523]	chr4	204663	249	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	402	2	5.96971	6.90488	7.84005	2.98185e-4	6.35207e-6	0.00982269	3.73432e-4
chr16	85226802	85226902	6515336	0	+	0.57	(0.523,0.58]	chr16	646373	416	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	213	2	6.2084	6.904425	7.60045	4.95211e-4	4.93015e-4	0.0128889	0.00865935
chr19	6239689	6239788	7321409	0	-	0.484848	(0.45,0.485]	chr19	756093	86	INTRON	INTRON	MLLT1	ENSG00000130382.9	ENST00000252674.9	protein_coding	protein_coding	protein_coding	protein_coding	0	186	2	6.86006	6.90368	6.9473	0.00252685	7.52721e-5	0.031696	0.00222212
chr15	40108186	40108258	6235241	0	-	0.541667	(0.523,0.58]	chr15	613049	3	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	BMF	ENSG00000104081.14	ENST00000354670.9:ENST00000558774.5:ENST00000559701.5:ENST00000557870.1:ENST00000560430.1:ENST00000558057.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	209	2	6.26113	6.903359999999999	7.54559	5.51177e-4	4.27166e-4	0.0136794	0.00779962
chr10	48041232	48041332	4680778	0	-	0.46	(0.45,0.485]	chr10	446508	18	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	0	187	2	6.65208	6.903195	7.15431	0.00371059	4.04936e-5	0.039096	0.00140723
chr3	13203225	13203325	1691174	0	-	0.6	(0.58,1]	chr3	176566	387	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	178	2	6.88324	6.90307	6.9229	8.53086e-4	2.46059e-5	0.0173632	9.771e-4
chrX	77659424	77659523	8073784	0	-	0.383838	(0.36,0.39]	chrX	842163	24	INTRON	INTRON	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000624166.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	189	2	6.67396	6.90222	7.13048	0.00448681	6.69803e-5	0.0436138	0.00203052
chr13	113057498	113057598	5656212	0	+	0.5	(0.485,0.523]	chr13	555189	27	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	1	409	2	5.58524	6.902049999999999	8.21886	1.35227e-4	2.19978e-5	0.00645702	9.00204e-4
chr10	18568659	18568759	4642415	0	-	0.4	(0.39,0.419]	chr10	443321	163	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	191	2	6.73651	6.9018250000000005	7.06714	0.00228675	2.05874e-4	0.0302327	0.00461335
chr1	43564405	43564505	107083	0	+	0.55	(0.523,0.58]	chr1	13192	101	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	421	2	5.40856	6.9014299999999995	8.3943	9.45666e-5	3.68325e-5	0.00542848	0.00131223
chr11	70658428	70658528	5060859	0	-	0.42	(0.419,0.45]	chr11	492672	36	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	428	2	5.69065	6.900545	8.11044	4.03555e-4	3.06577e-5	0.0114903	0.00114623
chr2	11362411	11362510	1089490	0	-	0.484848	(0.45,0.485]	chr2	118760	40	INTRON	INTRON	ENSG00000230952	ENSG00000230952.1	ENST00000430897.1	lncRNA	lncRNA	lncRNA	lncRNA	0	186	2	6.88225	6.900354999999999	6.91846	0.00226513	9.12292e-5	0.0300628	0.00255062
chr4	145515113	145515213	2147401	0	+	0.43	(0.419,0.45]	chr4	217642	1	SS5_PROX	SS5_PROX:INTRON	SMAD1	ENSG00000170365.10	ENST00000302085.9:ENST00000394092.6:ENST00000515385.1	protein_coding	protein_coding	protein_coding	protein_coding	0	189	2	6.83865	6.899990000000001	6.96133	0.00404244	1.27315e-4	0.0412991	0.00327695
chr19	35001921	35002021	7244877	0	+	0.42	(0.419,0.45]	chr19	742064	1	SS3_PROX	SS3_PROX:INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	217	2	6.21151	6.8999500000000005	7.58839	0.00106381	9.41863e-4	0.0196024	0.0135546
chr19	1289189	1289288	7186896	0	+	0.585859	(0.58,1]	chr19	731132	25	INTRON	INTRON	EFNA2	ENSG00000099617.4	ENST00000215368.4	protein_coding	protein_coding	protein_coding	protein_coding	0	178	2	6.87088	6.89953	6.92818	7.72338e-4	2.92911e-5	0.0164417	0.00110673
chr20	44357948	44358048	7482487	0	+	0.46	(0.45,0.485]	chr20	779618	17	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5	protein_coding	protein_coding	protein_coding	protein_coding	0	189	2	6.70552	6.899465	7.09341	0.00162663	1.52809e-4	0.0249683	0.00372909
chr17	44041254	44041354	6910329	0	-	0.39	(0.36,0.39]	chr17	703395	6	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	0	190	2	6.75506	6.898885	7.04271	0.00232085	1.93748e-4	0.030354	0.00442349
chr16	47264511	47264611	6583832	0	-	0.41	(0.39,0.419]	chr16	658309	16	INTRON	INTRON	ITFG1	ENSG00000129636.13	ENST00000568047.5:ENST00000320640.11:ENST00000537184.6:ENST00000542691.5:ENST00000544001.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	188	2	6.73829	6.898820000000001	7.05935	0.00411485	8.30081e-5	0.0414433	0.00237656
chr8	128040775	128040873	3920289	0	+	0.377551	(0.36,0.39]	chr8	374321	5	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	1	436	2	6.22655	6.898705	7.57086	8.70265e-4	5.22082e-6	0.0175764	3.2605e-4
chr17	80290247	80290337	6807473	0	+	0.533333	(0.523,0.58]	chr17	687386	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000319921.4:ENST00000559070.5:ENST00000573548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	184	2	6.71116	6.89868	7.0862	0.00284169	3.69579e-5	0.033773	0.00131447
chr18	76418066	76418166	7179300	0	-	0.42	(0.419,0.45]	chr18	730080	374	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	1	426	2	5.7555	6.8982149999999995	8.04093	4.59832e-4	2.53066e-5	0.0123493	9.9745e-4
chr10	18569359	18569459	4642422	0	-	0.42	(0.419,0.45]	chr10	443321	170	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	193	2	6.67269	6.89724	7.12179	0.0024648	2.80959e-4	0.0313232	0.00578259
chr4	3363496	3363595	2005071	0	+	0.626263	(0.58,1]	chr4	204663	201	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	177	2	6.82104	6.89708	6.97312	9.78215e-4	2.07776e-5	0.0187475	8.62032e-4
chr11	68350918	68351017	4882467	0	+	0.50505	(0.485,0.523]	chr11	470548	23	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	564	2	4.97593	6.89683	8.81773	3.77867e-5	3.48385e-5	0.00341297	0.00126017
chr14	70023847	70023947	5872621	0	+	0.54	(0.523,0.58]	chr14	573362	4	SS5_PROX	SS5_PROX:INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	1	506	2	5.86743	6.89682	7.92621	2.26886e-4	2.5058e-6	0.00851514	1.94472e-4
chr17	55052842	55052942	6755886	0	+	0.35	(0.33,0.36]	chr17	681651	53	INTRON	INTRON	STXBP4	ENSG00000166263.13	ENST00000376352.6:ENST00000434978.6	protein_coding	protein_coding	protein_coding	protein_coding	0	186	2	6.79698	6.896699999999999	6.99642	0.00296844	8.15617e-5	0.0346919	0.00235199
chr12	71483726	71483826	5265407	0	+	0.38	(0.36,0.39]	chr12	513469	350	INTRON	INTRON	LGR5	ENSG00000139292.13	ENST00000266674.10:ENST00000550851.5:ENST00000536515.5:ENST00000540815.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	196	2	6.37636	6.89661	7.41686	0.00749622	2.90729e-5	0.0576451	0.00110268
chr7	6702880	6702979	3542742	0	-	0.50505	(0.485,0.523]	chr7	342318	21	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	0	191	2	6.58086	6.8964300000000005	7.212	0.00106612	1.79455e-4	0.0196248	0.00418827
chr2	111422009	111422109	1252856	0	-	0.58	(0.523,0.58]	chr2	134896	437	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1	lncRNA	lncRNA	lncRNA	lncRNA	1	403	2	6.12235	6.896415	7.67048	4.27349e-4	3.62902e-6	0.0118572	2.52791e-4
chr10	72707583	72707682	4506403	0	+	0.444444	(0.419,0.45]	chr10	431173	142	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	191	2	6.74598	6.896190000000001	7.0464	0.00281529	2.30334e-4	0.0336649	0.00498593
chr4	2826776	2826867	2000387	0	+	0.461538	(0.45,0.485]	chr4	203975	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SH3BP2	ENSG00000087266.17	ENST00000503393.8:ENST00000504294.5:ENST00000508385.5:ENST00000511663.5:ENST00000512014.5:ENST00000435136.8:ENST00000511185.5:ENST00000511747.6:ENST00000356331.9:ENST00000515737.5:ENST00000515183.5:ENST00000505941.5:ENST00000510204.5:ENST00000515802.5:ENST00000504450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	192	2	6.40899	6.896050000000001	7.38311	0.00574958	2.0142e-5	0.0499659	8.45059e-4
chr5	59656078	59656178	2670699	0	-	0.44	(0.419,0.45]	chr5	264360	697	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000507116.5:ENST00000502484.6:ENST00000309641.10:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	189	2	6.69793	6.89575	7.09357	0.00514373	8.791e-5	0.0471181	0.00248329
chr16	85426020	85426120	6517331	0	+	0.5	(0.485,0.523]	chr16	646391	667	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	200	2	6.38149	6.895390000000001	7.40929	7.18613e-4	3.18797e-4	0.0158219	0.00634142
chr2	111297031	111297131	1251597	0	-	0.47	(0.45,0.485]	chr2	134852	33	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000673962.1:ENST00000674132.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000662889.1:ENST00000665096.1:ENST00000674092.1:ENST00000673958.1:ENST00000673770.1:ENST00000673961.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000656303.1:ENST00000666367.1:ENST00000666652.1:ENST00000669050.1:ENST00000667218.1:ENST00000656067.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000673700.1:ENST00000443467.6:ENST00000451884.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000655573.1:ENST00000656416.1:ENST00000662384.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1	lncRNA	lncRNA	lncRNA	lncRNA	0	185	2	6.73566	6.895085	7.05451	0.00318291	5.46803e-5	0.0360488	0.00175188
chr10	35482703	35482803	4477141	0	+	0.46	(0.45,0.485]	chr10	428126	269	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	187	2	6.76085	6.894729999999999	7.02861	0.00184	1.3016e-4	0.0267545	0.00332369
chr7	223145	223244	3305886	0	+	0.636364	(0.58,1]	chr7	320161	138	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	178	2	6.61656	6.89455	7.17254	0.00152464	1.05286e-5	0.0240691	5.33404e-4
chr22	46840983	46841083	7745798	0	+	0.42	(0.419,0.45]	chr22	812199	430	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	195	2	6.59547	6.89445	7.19343	0.00217056	3.45753e-4	0.029243	0.00672667
chr5	1103704	1103803	2608888	0	-	0.656566	(0.58,1]	chr5	259667	91	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	0	178	2	6.8169	6.894335	6.97177	7.01049e-4	3.50609e-5	0.0156107	0.00126332
chr19	18509623	18509723	7348292	0	-	0.6	(0.58,1]	chr19	761503	338	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	514	2	6.33036	6.893985	7.45761	3.0233e-5	3.90231e-6	0.00309439	2.65981e-4
chr14	34981229	34981328	5958194	0	-	0.343434	(0.33,0.36]	chr14	584010	87	INTRON	INTRON	SRP54-AS1	ENSG00000258704.7	ENST00000692503.1:ENST00000690110.1:ENST00000690001.1:ENST00000688072.1:ENST00000693002.1:ENST00000556355.5:ENST00000555015.5:ENST00000693259.1:ENST00000636540.1:ENST00000556705.6:ENST00000691849.1:ENST00000686430.1:ENST00000686298.1:ENST00000688866.1:ENST00000689842.1:ENST00000554945.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	0	187	2	6.80103	6.89354	6.98605	0.002089	1.4311e-4	0.0287557	0.00355964
chr16	89913816	89913910	6526314	0	+	0.595745	(0.58,1]	chr16	647716	3	UTR5	UTR5:EXON_MRNA:INTRON	ENSG00000267048:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000539976.1:ENST00000555427.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	1	397	2	6.50688	6.893385	7.27989	3.49762e-4	3.63375e-7	0.0106878	5.39111e-5
chr21	45500340	45500439	7631308	0	+	0.565657	(0.523,0.58]	chr21	797812	23	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	0	198	2	6.40865	6.893224999999999	7.3778	7.7332e-4	2.80789e-4	0.0164417	0.00578259
chr17	77216743	77216832	6803143	0	+	0.505618	(0.485,0.523]	chr17	686686	3	UTR3	UTR3:EXON_MRNA	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	0	184	2	6.84483	6.893165	6.9415	0.00181258	8.20567e-5	0.0264638	0.00236018
chr3	23842187	23842287	1431154	0	+	0.51	(0.485,0.523]	chr3	152792	303	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	499	2	5.80728	6.892950000000001	7.97862	2.55257e-4	2.28725e-6	0.00904796	1.82747e-4
chr2	182732282	182732382	969403	0	+	0.4	(0.39,0.419]	chr2	106399	4	SS3_PROX	SS3_PROX:INTRON	DNAJC10	ENSG00000077232.19	ENST00000679526.1:ENST00000680258.1:ENST00000679491.1:ENST00000680667.1:ENST00000264065.12:ENST00000616986.5:ENST00000680480.1:ENST00000681873.1:ENST00000680060.1:ENST00000681139.1:ENST00000681146.1:ENST00000650903.2:ENST00000680484.1:ENST00000491074.6:ENST00000679884.1:ENST00000537515.5:ENST00000418559.6:ENST00000459930.1:ENST00000444005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	431	2	6.1717	6.892810000000001	7.61392	8.3047e-4	6.24709e-6	0.0171232	3.69037e-4
chr5	113518536	113518635	2508272	0	+	0.393939	(0.39,0.419]	chr5	249392	28	INTRON	INTRON	YTHDC2	ENSG00000047188.16	ENST00000161863.9:ENST00000503857.5:ENST00000515883.5:ENST00000514720.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	187	2	6.77006	6.8926750000000006	7.01529	0.00389104	9.4123e-5	0.0402085	0.00261888
chr7	133676925	133677025	3489411	0	+	0.46	(0.45,0.485]	chr7	336701	464	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	187	2	6.56336	6.892475	7.22159	0.00436001	3.30215e-5	0.0427656	0.00120982
chr2	239283275	239283375	1391541	0	-	0.62	(0.58,1]	chr2	148740	317	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	177	2	6.67046	6.89226	7.11406	0.00135763	1.2868e-5	0.0224546	6.14919e-4
chr8	630737	630837	3932027	0	-	0.62	(0.58,1]	chr8	376005	31	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	180	2	6.70249	6.89222	7.08195	5.47872e-4	5.11463e-5	0.0136476	0.00167326
chr7	74364913	74365012	3390938	0	+	0.515152	(0.485,0.523]	chr7	327282	2	INTRON	INTRON	CLIP2	ENSG00000106665.16	ENST00000223398.11:ENST00000361545.9	protein_coding	protein_coding	protein_coding	protein_coding	0	191	2	6.56002	6.891859999999999	7.2237	0.00104165	1.90696e-4	0.0193905	0.0043642
chr8	6542263	6542363	3745986	0	+	0.42	(0.419,0.45]	chr8	360211	419	INTRON	INTRON	MCPH1	ENSG00000147316.15	ENST00000690826.1:ENST00000692938.1:ENST00000693231.1:ENST00000688388.1:ENST00000344683.10:ENST00000690708.1:ENST00000689348.1:ENST00000690159.1:ENST00000689736.1:ENST00000689633.1:ENST00000691435.1:ENST00000692836.1:ENST00000687720.1:ENST00000688101.1:ENST00000689148.1:ENST00000687324.1:ENST00000521175.2:ENST00000519221.6:ENST00000521129.2:ENST00000687413.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	188	2	6.85347	6.891845	6.93022	0.00394037	1.38812e-4	0.0406053	0.00347953
chr10	79218973	79219073	4533551	0	+	0.54	(0.523,0.58]	chr10	432457	23	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	184	2	6.81357	6.89135	6.96913	0.0017332	8.51182e-5	0.0257605	0.00242869
chr3	134077011	134077111	1918576	0	-	0.54	(0.523,0.58]	chr3	195226	14	INTRON	INTRON	RYK	ENSG00000163785.13	ENST00000484106.3	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	184	2	6.81357	6.89135	6.96913	0.0017332	8.51182e-5	0.0257605	0.00242869
chr8	118027329	118027429	4048896	0	-	0.4	(0.39,0.419]	chr8	386022	102	INTRON	INTRON	EXT1	ENSG00000182197.13	ENST00000378204.7:ENST00000437196.1:ENST00000436216.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	418	2	5.81258	6.89079	7.969	4.21961e-4	1.86948e-5	0.011772	8.03613e-4
chr6	15300644	15300744	2857053	0	+	0.48	(0.45,0.485]	chr6	279178	513	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	428	2	5.36486	6.8907300000000005	8.4166	1.16447e-4	5.20704e-5	0.00601449	0.00169273
chr10	32040657	32040757	4662184	0	-	0.46	(0.45,0.485]	chr10	445111	2	SS3_PROX	SS3_PROX:INTRON	KIF5B	ENSG00000170759.11	ENST00000302418.5	protein_coding	protein_coding	protein_coding	protein_coding	0	186	2	6.77883	6.89034	7.00185	0.00193567	1.23522e-4	0.0275437	0.00321265
chr2	235999210	235999310	1067608	0	+	0.48	(0.45,0.485]	chr2	115748	302	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5:ENST00000418654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	186	2	6.77883	6.89034	7.00185	0.00193567	1.23522e-4	0.0275437	0.00321265
chr7	158916969	158917067	3523159	0	+	0.459184	(0.45,0.485]	chr7	340293	23	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	186	2	6.77883	6.89034	7.00185	0.00193567	1.23522e-4	0.0275437	0.00321265
chr10	35335927	35335995	4673271	0	-	0.647059	(0.58,1]	chr10	445751	1	EXON_LNCRNA	EXON_LNCRNA	CCNY-AS1	ENSG00000271335.6	ENST00000659251.1:ENST00000605499.1	lncRNA	lncRNA	lncRNA	lncRNA	0	199	2	6.26544	6.889775	7.51411	2.06156e-4	2.03828e-4	0.0080616	0.00461335
chr9	131429189	131429289	4257968	0	+	0.56	(0.523,0.58]	chr9	405607	346	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	0	184	2	6.60786	6.88959	7.17132	0.00345115	2.83567e-5	0.037649	0.00107991
chr10	76006910	76007010	4526238	0	+	0.53	(0.523,0.58]	chr10	432292	1230	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	184	2	6.79581	6.88938	6.98295	0.00168728	8.98003e-5	0.0254298	0.00252158
chr16	29270413	29270513	6433541	0	+	0.3	(0.29,0.33]	chr16	636745	183	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	1	481	2	5.6634	6.88927	8.11514	3.02295e-4	1.65781e-6	0.00988096	1.46243e-4
chr16	58161507	58161605	6598355	0	-	0.459184	(0.45,0.485]	chr16	659848	21	EXON_MRNA	EXON_MRNA:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	1530	2	6.31211	6.888315	7.46452	9.47396e-6	5.52607e-7	0.00184506	7.07379e-5
chr16	12261142	12261242	6392480	0	+	0.63	(0.58,1]	chr16	631965	611	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	181	2	6.44159	6.888275	7.33496	0.00221069	5.99783e-6	0.0295736	3.5765e-4
chr17	77484327	77484427	6805225	0	+	0.55	(0.523,0.58]	chr17	686821	3	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	201	2	6.33678	6.888025	7.43927	6.83398e-4	3.44853e-4	0.0153809	0.00672121
chr1	245814815	245814915	698920	0	-	0.56	(0.523,0.58]	chr1	82357	4	SS3_PROX	SS3_PROX:INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000493441.5:ENST00000488153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	204	2	6.28679	6.88768	7.48857	6.18664e-4	3.97355e-4	0.0145945	0.00741985
chr6	16760997	16761097	3104464	0	-	0.64	(0.58,1]	chr6	300922	3	SS5_PROX	SS5_PROX:INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000473388.6:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1:ENST00000467008.5:ENST00000498374.1:ENST00000492857.1:ENST00000479680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	374	2	5.64596	6.887425	8.12889	4.75643e-5	8.22868e-6	0.00379612	4.47628e-4
chr16	52509612	52509712	6589485	0	-	0.39	(0.36,0.39]	chr16	658702	336	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	186	2	6.8178	6.886375	6.95495	0.00347933	1.10597e-4	0.0378956	0.00296147
chr1	29237316	29237416	78381	0	+	0.64	(0.58,1]	chr1	8914	2	INTRON	INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2	protein_coding	protein_coding	protein_coding	protein_coding	0	182	2	6.39965	6.88626	7.37287	0.00241374	5.25408e-6	0.0309229	3.26574e-4
chr8	143323213	143323308	4095560	0	-	0.652632	(0.58,1]	chr8	389125	15	INTRON	INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	182	2	6.39965	6.88626	7.37287	0.00241374	5.25408e-6	0.0309229	3.26574e-4
chr18	48658257	48658357	7057850	0	+	0.4	(0.39,0.419]	chr18	720311	212	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1:ENST00000589585.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	204	2	6.17597	6.88625	7.59653	0.0107103	1.72719e-5	0.0701493	7.58364e-4
chr19	1169842	1169941	7305751	0	-	0.535354	(0.523,0.58]	chr19	753058	8	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	187	2	6.64525	6.88608	7.12691	0.00127326	1.40789e-4	0.0217367	0.00351181
chr18	77118925	77119024	7181510	0	-	0.606061	(0.58,1]	chr18	730186	133	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1:ENST00000583798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	195	2	6.3182	6.886055	7.45391	2.34376e-4	1.74994e-4	0.00863036	0.00410754
chr1	52449061	52449161	484148	0	-	0.45	(0.419,0.45]	chr1	57516	20	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000469810.1:ENST00000528642.5:ENST00000497120.1:ENST00000484723.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	195	2	6.55525	6.885895	7.21654	0.00208302	3.84925e-4	0.0287557	0.00726694
chr4	3179819	3179916	2003666	0	+	0.546392	(0.523,0.58]	chr4	204462	10	INTRON	INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000680291.1:ENST00000510626.5:ENST00000509043.1:ENST00000513326.5:ENST00000513639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	182	2	6.82302	6.88566	6.9483	0.00229691	5.65196e-5	0.0302623	0.00179471
chr22	50711314	50711414	7755298	0	+	0.56	(0.523,0.58]	chr22	812778	3	SS3_PROX	SS3_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	516	2	5.97253	6.88539	7.79825	1.81733e-4	3.81293e-6	0.00759001	2.62442e-4
chr16	85387637	85387737	6516947	0	+	0.34	(0.33,0.36]	chr16	646391	283	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	198	2	6.42466	6.885375	7.34609	0.00105263	4.08653e-4	0.0194688	0.00759284
chr16	50598198	50598298	6451909	0	+	0.6	(0.58,1]	chr16	639902	396	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	515	2	5.03699	6.8851949999999995	8.7334	1.36069e-5	1.09211e-5	0.00194719	6.39223e-4
chr6	90576394	90576493	3205766	0	-	0.464646	(0.45,0.485]	chr6	311230	42	INTRON	INTRON	MAP3K7	ENSG00000135341.18	ENST00000369332.7:ENST00000369327.7:ENST00000369325.7:ENST00000369329.8	protein_coding	protein_coding	protein_coding	protein_coding	0	184	2	6.86552	6.8848	6.90408	0.00232708	9.58344e-5	0.0303784	0.00264329
chr5	78972282	78972381	2706555	0	-	0.424242	(0.419,0.45]	chr5	266741	27	INTRON	INTRON	ARSB	ENSG00000113273.17	ENST00000264914.10:ENST00000396151.7:ENST00000565165.2	protein_coding	protein_coding	protein_coding	protein_coding	0	187	2	6.82367	6.884765	6.94586	0.00414811	1.32913e-4	0.0416765	0.00337193
chr16	1606819	1606919	6533945	0	-	0.56	(0.523,0.58]	chr16	649182	3	SS5_PROX	SS5_PROX:INTRON	IFT140	ENSG00000187535.14	ENST00000426508.7:ENST00000397417.6:ENST00000439987.6:ENST00000566052.1:ENST00000569646.5:ENST00000569812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	183	2	6.6256	6.884550000000001	7.1435	0.00333843	3.0928e-5	0.0368376	0.00115425
chr14	105215284	105215382	6058150	0	-	0.5	(0.485,0.523]	chr14	594783	20	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000392557.8:ENST00000446501.6:ENST00000635152.1:ENST00000547374.5:ENST00000551787.5:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	182	2	6.77657	6.88435	6.99213	0.00248912	5.25088e-5	0.0315244	0.00170211
chr7	101959189	101959289	3435405	0	+	0.5	(0.485,0.523]	chr7	332524	262	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	397	2	5.73572	6.883815	8.03191	2.00135e-4	1.35768e-5	0.00798283	6.38969e-4
chr19	943915	944015	7185285	0	+	0.63	(0.58,1]	chr19	730741	108	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	181	2	6.62084	6.883805000000001	7.14677	4.73371e-4	6.67603e-5	0.0125708	0.00202861
chr5	175881337	175881436	2594668	0	+	0.40404	(0.39,0.419]	chr5	257471	14	UTR3	UTR3:EXON_MRNA	CPLX2	ENSG00000145920.15	ENST00000359546.8:ENST00000393745.8	protein_coding	protein_coding	protein_coding	protein_coding	1	597	2	6.65568	6.88378	7.11188	0.00475491	3.28062e-7	0.0450109	5.02249e-5
chr17	42201441	42201540	6903093	0	-	0.50505	(0.485,0.523]	chr17	702115	24	UTR3	UTR3:EXON_MRNA	STAT5B	ENSG00000173757.10	ENST00000293328.8	protein_coding	protein_coding	protein_coding	protein_coding	1	503	2	5.86967	6.883775	7.89788	2.23812e-4	2.979e-6	0.00845454	2.18763e-4
chr16	81636074	81636174	6509658	0	+	0.53	(0.523,0.58]	chr16	645926	140	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	190	2	6.54248	6.882875	7.22327	0.00105256	1.90498e-4	0.0194688	0.0043642
chr17	72558023	72558123	6963891	0	-	0.53	(0.523,0.58]	chr17	710389	236	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	2	560	2	5.9626	6.881855	7.80111	3.26821e-4	1.27996e-6	0.0102955	1.23259e-4
chr9	109414973	109415072	4366898	0	-	0.545455	(0.523,0.58]	chr9	417093	42	INTRON	INTRON	PTPN3	ENSG00000070159.14	ENST00000262539.7:ENST00000412145.5:ENST00000446349.5:ENST00000374541.4	protein_coding	protein_coding	protein_coding	protein_coding	0	182	2	6.86558	6.88175	6.89792	0.00198913	7.2723e-5	0.0279961	0.00216169
chr17	14398071	14398171	6683517	0	+	0.35	(0.33,0.36]	chr17	670768	5	INTRON	INTRON	ENSG00000230647	ENSG00000230647.2	ENST00000436469.1:ENST00000655690.1	lncRNA	lncRNA	lncRNA	lncRNA	2	548	2	5.3438	6.88161	8.41942	1.23965e-4	1.58103e-5	0.00618972	7.12006e-4
chr1	211797886	211797986	655063	0	-	0.28	[0,0.29]	chr1	77269	43	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	0	178	2	6.78216	6.881365000000001	6.98057	0.00120665	3.91028e-5	0.0210633	0.00136958
chr1	9357284	9357383	20229	0	+	0.373737	(0.36,0.39]	chr1	2217	3	INTRON	INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11:ENST00000357898.3:ENST00000377399.2	protein_coding	protein_coding	protein_coding	protein_coding	0	195	2	6.33445	6.88128	7.42811	0.00804615	2.81245e-5	0.0600099	0.00107401
chr11	66749017	66749116	4877362	0	+	0.393939	(0.39,0.419]	chr11	469641	1	INTRON	INTRON	C11orf80	ENSG00000173715.18	ENST00000534325.5:ENST00000524551.5:ENST00000525908.6:ENST00000540737.7:ENST00000527634.5:ENST00000527368.5:ENST00000531400.6:ENST00000642265.1:ENST00000532565.6:ENST00000525449.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	211	2	6.21998	6.8810649999999995	7.54215	9.5067e-4	8.22163e-4	0.0184489	0.0124043
chr14	89255211	89255311	6026650	0	-	0.47	(0.45,0.485]	chr14	591432	240	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	184	2	6.63477	6.88063	7.12649	0.00382972	4.40415e-5	0.0399078	0.00149941
chr20	8493838	8493938	7430206	0	+	0.5	(0.485,0.523]	chr20	773698	1218	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	1899	2	6.27916	6.880105	7.48105	6.88114e-6	1.22473e-7	0.00157697	2.65748e-5
chr6	2834512	2834605	3085364	0	-	0.473118	(0.45,0.485]	chr6	299537	1	INTRON	INTRON	SERPINB1	ENSG00000021355.13	ENST00000380739.6:ENST00000468511.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	188	2	6.62829	6.879614999999999	7.13094	0.00151409	1.90839e-4	0.0240218	0.0043642
chr10	119347274	119347374	4594720	0	+	0.43	(0.419,0.45]	chr10	439173	203	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	187	2	6.66471	6.87914	7.09357	0.00544202	8.791e-5	0.0486855	0.00248329
chr4	4439108	4439208	2184982	0	-	0.36	(0.33,0.36]	chr4	221823	2	INTRON	INTRON	STX18	ENSG00000168818.10	ENST00000505286.5:ENST00000306200.7:ENST00000503861.5:ENST00000512195.5:ENST00000507908.5:ENST00000512780.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	187	2	6.69243	6.879020000000001	7.06561	0.00179858	1.94643e-4	0.0263284	0.00443969
chr7	158915113	158915211	3523140	0	+	0.44898	(0.419,0.45]	chr7	340293	4	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	191	2	6.63459	6.87819	7.12179	0.0024648	3.11318e-4	0.0313232	0.00624487
chr2	54533311	54533411	799046	0	+	0.46	(0.45,0.485]	chr2	90794	47	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7	protein_coding	protein_coding	protein_coding	protein_coding	1	486	2	5.35941	6.877884999999999	8.39636	7.56555e-4	8.03999e-7	0.0162519	9.11123e-5
chr19	15643606	15643706	7215389	0	+	0.52	(0.485,0.523]	chr19	737134	3	SS3_PROX	SS3_PROX:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	508	2	5.92527	6.877565000000001	7.82986	1.99007e-4	3.71828e-6	0.00796847	2.57726e-4
chr13	113011566	113011666	5655739	0	+	0.61	(0.58,1]	chr13	555138	92	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	454	2	5.92606	6.877425	7.82879	8.07819e-5	1.03852e-6	0.00498873	1.06938e-4
chr10	132712951	132713051	4618597	0	+	0.51	(0.485,0.523]	chr10	441181	21	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000487614.1:ENST00000498337.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	182	2	6.8275	6.8773800000000005	6.92726	0.00186327	8.64447e-5	0.0269723	0.00245611
chr20	58688252	58688351	7498560	0	+	0.373737	(0.36,0.39]	chr20	781977	89	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1:ENST00000413559.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	2	558	2	5.23799	6.8772	8.51641	1.39074e-4	2.57359e-5	0.00654948	0.00101034
chr11	47806812	47806890	5037739	0	-	0.410256	(0.39,0.419]	chr11	487900	1	SS5_PROX	SS5_PROX:INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5	protein_coding	protein_coding	protein_coding	protein_coding	0	188	2	6.69986	6.877079999999999	7.0543	0.00234061	2.27791e-4	0.0305023	0.00496195
chr10	7723050	7723150	4442147	0	+	0.66	(0.58,1]	chr10	425525	2	SS3_PROX	SS3_PROX:INTRON	ITIH2	ENSG00000151655.19	ENST00000358415.9:ENST00000379587.4	protein_coding	protein_coding	protein_coding	protein_coding	2	518	2	6.04646	6.87673	7.707	1.2982e-4	3.4667e-7	0.00632759	5.19838e-5
chr17	28111805	28111905	6704796	0	+	0.46	(0.45,0.485]	chr17	673022	630	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	184	2	6.77883	6.876704999999999	6.97458	0.00203802	1.23522e-4	0.0283511	0.00321265
chrX	48942303	48942402	8040898	0	-	0.50505	(0.485,0.523]	chrX	838808	56	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	398	2	5.63716	6.876535	8.11591	1.67879e-4	1.86339e-5	0.00724399	8.01857e-4
chr10	45857092	45857192	4678140	0	-	0.51	(0.485,0.523]	chr10	446183	18	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000610690.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	0	181	2	6.80799	6.876335	6.94468	0.0023441	6.06735e-5	0.0305023	0.00188492
chr6	100560764	100560864	3210527	0	-	0.43	(0.419,0.45]	chr6	311822	200	INTRON	INTRON	ASCC3	ENSG00000112249.14	ENST00000369162.7	protein_coding	protein_coding	protein_coding	protein_coding	0	186	2	6.85347	6.875945	6.89842	0.00394037	1.51593e-4	0.0406053	0.00370696
chr1	14943022	14943122	43837	0	+	0.39	(0.36,0.39]	chr1	4384	126	INTRON	INTRON	KAZN	ENSG00000189337.17	ENST00000636203.1:ENST00000376030.7:ENST00000491547.1:ENST00000503743.5:ENST00000361144.9:ENST00000400798.6:ENST00000376028.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	195	2	6.48035	6.87566	7.27097	0.00152619	4.10333e-4	0.0240809	0.00761562
chr17	81148691	81148791	6982989	0	-	0.54	(0.523,0.58]	chr17	713268	138	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	182	2	6.79581	6.875485	6.95516	0.00178078	8.98003e-5	0.0262315	0.00252158
chr10	79165429	79165529	4533011	0	+	0.57	(0.523,0.58]	chr10	432438	29	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	478	2	5.55726	6.875475	8.19369	4.34217e-4	1.03241e-6	0.0119405	1.06505e-4
chr4	3179722	3179819	2003665	0	+	0.546392	(0.523,0.58]	chr4	204462	9	INTRON	INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000680291.1:ENST00000510626.5:ENST00000509043.1:ENST00000513326.5:ENST00000513639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	181	2	6.86843	6.87547	6.88251	0.00210534	6.90788e-5	0.028892	0.00208248
chr3	61249907	61250006	1806117	0	-	0.424242	(0.419,0.45]	chr3	186858	54	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5:ENST00000490952.1:ENST00000465330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	190	2	6.65377	6.87543	7.09709	0.00257476	2.95666e-4	0.0321387	0.00601525
chr4	4439208	4439308	2184983	0	-	0.38	(0.36,0.39]	chr4	221823	3	INTRON	INTRON	STX18	ENSG00000168818.10	ENST00000505286.5:ENST00000306200.7:ENST00000503861.5:ENST00000512195.5:ENST00000507908.5:ENST00000512780.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	188	2	6.68176	6.875135	7.06851	0.00221433	2.3726e-4	0.0295806	0.0051158
chr2	187503447	187503547	1343020	0	-	0.35	(0.33,0.36]	chr2	142473	4	SS5_PROX	SS5_PROX:INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5:ENST00000481132.5:ENST00000435414.5:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000437725.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	204	2	6.28203	6.875125	7.46822	8.30658e-4	6.00348e-4	0.0171232	0.00994732
chr7	4770743	4770843	3310236	0	+	0.39	(0.36,0.39]	chr7	320850	84	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	0	189	2	6.64367	6.87502	7.10637	0.00206645	2.6343e-4	0.0285954	0.00553857
chr14	95319310	95319410	6048842	0	-	0.59	(0.58,1]	chr14	593434	2	SS5_PROX	SS5_PROX:INTRON	CLMN	ENSG00000165959.12	ENST00000298912.9:ENST00000553733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	381	2	6.36869	6.874515000000001	7.38034	2.77767e-4	6.05407e-7	0.00947659	7.52596e-5
chr10	31452642	31452742	4473089	0	+	0.39	(0.36,0.39]	chr10	427907	626	INTRON	INTRON	ZEB1	ENSG00000148516.23	ENST00000488625.6:ENST00000560196.5:ENST00000542879.5:ENST00000561304.5:ENST00000320985.14:ENST00000560721.6:ENST00000559858.5:ENST00000558440.5:ENST00000437844.6:ENST00000424869.6:ENST00000542815.7:ENST00000558863.5:ENST00000561212.5:ENST00000558655.5:ENST00000561061.5:ENST00000559496.5:ENST00000446923.7:ENST00000557827.5:ENST00000606671.5:ENST00000606161.1:ENST00000493835.5:ENST00000560909.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	186	2	6.77281	6.874465	6.97612	0.00261876	1.84422e-4	0.0324697	0.00427863
chr4	3179043	3179140	2003658	0	+	0.494845	(0.485,0.523]	chr4	204462	2	INTRON	INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000680291.1:ENST00000510626.5:ENST00000509043.1:ENST00000513326.5:ENST00000513639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	183	2	6.55373	6.874359999999999	7.19499	0.00378829	2.80995e-5	0.0396337	0.00107401
chr17	77484826	77484926	6805230	0	+	0.51	(0.485,0.523]	chr17	686821	8	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	398	2	5.62006	6.8742350000000005	8.12841	1.63536e-4	1.96821e-5	0.00716861	8.29491e-4
chr7	47352531	47352630	3587316	0	-	0.616162	(0.58,1]	chr7	346030	58	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	435	2	5.65406	6.873925	8.09379	1.55005e-4	3.96253e-7	0.00693487	5.6977e-5
chrX	119637495	119637595	8095124	0	-	0.47	(0.45,0.485]	chrX	843925	3	SS3_PROX	SS3_PROX:INTRON	SEPTIN6	ENSG00000125354.24	ENST00000360156.11:ENST00000354228.8:ENST00000460411.5:ENST00000489216.5:ENST00000354416.7:ENST00000394610.7:ENST00000343984.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	183	2	6.63477	6.873575	7.11238	0.00382972	4.5955e-5	0.0399078	0.00154731
chr2	120277814	120277914	887950	0	+	0.41	(0.39,0.419]	chr2	100428	237	INTRON	INTRON	RALB	ENSG00000144118.14	ENST00000447591.5:ENST00000420510.5:ENST00000431732.5:ENST00000272519.10:ENST00000631312.2:ENST00000470417.1:ENST00000412383.5:ENST00000449649.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	215	2	5.97258	6.87352	7.77446	0.0148746	1.0132e-5	0.0833515	5.17686e-4
chr6	169651039	169651137	3304374	0	-	0.602041	(0.58,1]	chr6	319869	14	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	176	2	6.76083	6.87342	6.98601	6.79156e-4	4.22142e-5	0.0153241	0.0014546
chr17	6984908	6985008	6847355	0	-	0.4	(0.39,0.419]	chr17	693364	583	INTRON	INTRON	ALOX12-AS1	ENSG00000215067.11	ENST00000653385.1:ENST00000659418.1:ENST00000572385.5:ENST00000570562.5:ENST00000575889.5	lncRNA	lncRNA	lncRNA	lncRNA	0	193	2	6.52237	6.87341	7.22445	0.00171592	3.69587e-4	0.025659	0.00704866
chr5	171913744	171913842	2809371	0	-	0.479592	(0.45,0.485]	chr5	275169	26	INTRON	INTRON	FBXW11	ENSG00000072803.18	ENST00000296933.10:ENST00000517395.6:ENST00000265094.9:ENST00000393802.6:ENST00000523843.5:ENST00000519693.5:ENST00000520376.1:ENST00000518752.1:ENST00000522507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	182	2	6.82995	6.872545000000001	6.91514	0.00267274	8.2790699999999993e-05	0.0327654	0.00237398
chrX	47219605	47219702	7877799	0	+	0.608247	(0.58,1]	chrX	825683	1	INTRON	INTRON	CDK16	ENSG00000102225.17	ENST00000517997.5:ENST00000517479.1:ENST00000457458.6:ENST00000522883.1:ENST00000520295.5:ENST00000357227.9:ENST00000519758.5:ENST00000520893.5:ENST00000517426.5:ENST00000522234.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	174	2	6.80507	6.872455	6.93984	0.00101308	2.32442e-5	0.0191342	9.36605e-4
chr17	55324599	55324697	6757716	0	+	0.561224	(0.523,0.58]	chr17	681735	39	UTR3	UTR3:EXON_MRNA	HLF	ENSG00000108924.14	ENST00000226067.10	protein_coding	protein_coding	protein_coding	protein_coding	0	189	2	6.52102	6.872145	7.22327	0.00105256	2.02818e-4	0.0194688	0.0045746
chr8	143323118	143323213	4095559	0	-	0.652632	(0.58,1]	chr8	389125	14	INTRON	INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	182	2	6.33437	6.872085	7.4098	0.00276493	4.61644e-6	0.0332418	2.97736e-4
chr6	136278972	136279069	3272348	0	-	0.381443	(0.36,0.39]	chr6	316722	2	SS3_PROX	SS3_PROX:INTRON	BCLAF1	ENSG00000029363.17	ENST00000640069.1:ENST00000531224.6:ENST00000353331.8:ENST00000527536.5:ENST00000527613.5:ENST00000530767.5:ENST00000527759.5:ENST00000534269.5:ENST00000532384.5:ENST00000530429.5:ENST00000392348.6:ENST00000628517.2:ENST00000529826.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	188	2	6.66284	6.87204	7.08124	0.00216352	2.49931e-4	0.0292299	0.00531531
chr19	36214221	36214321	7367437	0	-	0.53	(0.523,0.58]	chr19	763877	2	SS5_PROX	SS5_PROX:INTRON	ZNF565	ENSG00000196357.12	ENST00000304116.10:ENST00000355114.9:ENST00000392173.6:ENST00000591473.1:ENST00000587803.1:ENST00000586648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	181	2	6.83111	6.871779999999999	6.91245	0.00193417	8.07247e-5	0.0275437	0.00233145
chr2	74032604	74032704	834325	0	+	0.62	(0.58,1]	chr2	94249	291	INTRON	INTRON	TET3	ENSG00000187605.16	ENST00000409262.8:ENST00000305799.8	protein_coding	protein_coding	protein_coding	protein_coding	0	174	2	6.70531	6.871385	7.03746	0.00125905	1.67087e-5	0.0215793	7.38685e-4
chr6	35493401	35493501	3125629	0	-	0.59	(0.58,1]	chr6	304825	63	INTRON	INTRON	TEAD3	ENSG00000007866.22	ENST00000338863.13:ENST00000402886.9:ENST00000639578.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	174	2	6.83685	6.87131	6.90577	9.44859e-4	2.60624e-5	0.0183873	0.00101533
chr21	46404168	46404267	7633021	0	+	0.40404	(0.39,0.419]	chr21	798231	13	INTRON	INTRON	PCNT	ENSG00000160299.18	ENST00000695558.1:ENST00000359568.10:ENST00000480896.5	protein_coding	protein_coding	protein_coding	protein_coding	0	207	2	6.07786	6.8712599999999995	7.66466	0.012565	1.40911e-5	0.0761905	6.53552e-4
chr5	32157963	32158063	2630494	0	-	0.26	[0,0.29]	chr5	261026	137	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	442	2	5.40894	6.87121	8.33348	3.08743e-4	4.34314e-7	0.00998901	6.05322e-5
chr1	91013351	91013451	525642	0	-	0.4	(0.39,0.419]	chr1	61801	306	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	417	2	6.01834	6.8708849999999995	7.72343	6.7492e-4	1.00007e-5	0.0153083	5.13591e-4
chr8	143322834	143322929	4095556	0	-	0.673684	(0.58,1]	chr8	389125	11	INTRON	INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	181	2	6.35646	6.87087	7.38528	0.00264106	5.03066e-6	0.0325876	3.16553e-4
chr13	42319916	42320014	5579240	0	+	0.387755	(0.36,0.39]	chr13	550311	8	UTR3	UTR3:EXON_MRNA	AKAP11	ENSG00000023516.9	ENST00000025301.4	protein_coding	protein_coding	protein_coding	protein_coding	1	501	2	5.22528	6.870845	8.51641	0.00121536	1.02181e-6	0.021112	1.05997e-4
chr22	46648521	46648620	7744663	0	+	0.525253	(0.523,0.58]	chr22	812052	102	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	0	183	2	6.70356	6.87027	7.03698	0.00151874	1.18392e-4	0.0240441	0.00311099
chr17	80275092	80275191	6807315	0	+	0.545455	(0.523,0.58]	chr17	687364	13	INTRON	INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000319921.4	protein_coding	protein_coding	protein_coding	protein_coding	0	181	2	6.81357	6.8702000000000005	6.92683	0.00188118	8.51182e-5	0.0270971	0.00242869
chr6	144415979	144416079	3021171	0	+	0.39	(0.36,0.39]	chr6	295154	124	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000628146.2:ENST00000421035.2	protein_coding	protein_coding	protein_coding	protein_coding	0	196	2	6.43646	6.87019	7.30392	0.00143567	4.61522e-4	0.0232366	0.00824056
chr3	131469495	131469595	1915913	0	-	0.38	(0.36,0.39]	chr3	194722	4	SS5_PROX	SS5_PROX:INTRON	MRPL3	ENSG00000114686.9	ENST00000264995.8:ENST00000511168.5:ENST00000510043.1:ENST00000425847.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	186	2	6.73708	6.870105	7.00313	0.00249381	2.0365e-4	0.0315747	0.00458968
chr10	100970990	100971084	4569832	0	+	0.457447	(0.45,0.485]	chr10	436226	7	INTRON	INTRON	SEMA4G	ENSG00000095539.15	ENST00000519649.5:ENST00000521006.5:ENST00000518124.5:ENST00000518244.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	659	2	4.91272	6.869495	8.82627	7.54646e-4	1.95788e-7	0.0162304	3.59364e-5
chr1	44241714	44241814	459588	0	-	0.5	(0.485,0.523]	chr1	55300	4	SS5_PROX	SS5_PROX:INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	180	2	6.77657	6.86862	6.96067	0.00248912	5.77936e-5	0.0315244	0.00182276
chr12	46436130	46436230	5217548	0	+	0.36	(0.33,0.36]	chr12	506633	235	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000687751.1:ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2:ENST00000666942.1:ENST00000551503.5:ENST00000657145.1	lncRNA	lncRNA	lncRNA	lncRNA	1	439	2	5.21879	6.86789	8.51699	1.01522e-4	9.4891e-5	0.0056249	0.00262417
chr7	99381451	99381551	3427411	0	+	0.6	(0.58,1]	chr7	331164	36	INTRON	INTRON	ARPC1B	ENSG00000130429.16	ENST00000443222.6:ENST00000414376.6:ENST00000645391.1:ENST00000695607.1:ENST00000455009.6:ENST00000484375.5:ENST00000695608.1:ENST00000418347.6:ENST00000646101.2:ENST00000427217.6:ENST00000451682.5:ENST00000431816.6:ENST00000458033.6:ENST00000417330.6:ENST00000695609.1:ENST00000484600.6:ENST00000429246.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	175	2	6.76083	6.866300000000001	6.97177	7.01049e-4	4.22142e-5	0.0156107	0.0014546
chr1	29237516	29237616	78383	0	+	0.77	(0.58,1]	chr1	8914	4	INTRON	INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2	protein_coding	protein_coding	protein_coding	protein_coding	0	176	2	6.5023	6.86552	7.22874	0.00194503	8.67357e-6	0.0275844	4.6303e-4
chr2	238269274	238269374	1388926	0	-	0.52	(0.485,0.523]	chr2	148517	3	SS3_PROX	SS3_PROX:INTRON	PER2	ENSG00000132326.12	ENST00000254657.8:ENST00000355768.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	472	2	5.3504	6.8653949999999995	8.38039	6.60841e-4	6.0461e-7	0.0151058	7.52596e-5
chr11	485150	485249	4784657	0	+	0.636364	(0.58,1]	chr11	457913	47	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	188	2	6.16945	6.864595	7.55974	0.00387582	2.72008e-6	0.0401256	2.04763e-4
chr20	62959233	62959329	7508289	0	+	0.729167	(0.58,1]	chr20	783180	13	INTRON	INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	178	2	6.62084	6.864535	7.10823	5.16402e-4	6.67603e-5	0.0132022	0.00202861
chr8	38770392	38770492	3802259	0	+	0.58	(0.523,0.58]	chr8	365828	126	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	645	2	5.06987	6.864515	8.65916	4.6871e-4	2.15185e-7	0.0125178	3.83646e-5
chr4	4439009	4439108	2184981	0	-	0.383838	(0.36,0.39]	chr4	221823	1	INTRON	INTRON	STX18	ENSG00000168818.10	ENST00000505286.5:ENST00000306200.7:ENST00000503861.5:ENST00000512195.5:ENST00000507908.5:ENST00000512780.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	189	2	6.58457	6.863910000000001	7.14325	0.00193144	3.09569e-4	0.0275437	0.00622124
chr22	20123291	20123385	7686875	0	+	0.606383	(0.58,1]	chr22	804213	2	INTRON	INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000331821.7:ENST00000411892.5:ENST00000423859.5:ENST00000418705.2:ENST00000448394.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	188	2	6.3691	6.863860000000001	7.35862	2.92006e-4	1.49225e-4	0.00970248	0.00367368
chr13	113634902	113635002	5659358	0	+	0.47	(0.45,0.485]	chr13	555810	3	SS5_PROX	SS5_PROX:INTRON	TFDP1	ENSG00000198176.13	ENST00000375370.10:ENST00000544902.5:ENST00000408980.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	200	2	6.11646	6.86372	7.61098	0.00956667	9.92605e-6	0.0658012	5.11988e-4
chr10	113874425	113874525	4591101	0	+	0.42	(0.419,0.45]	chr10	438820	154	INTRON	INTRON	NHLRC2	ENSG00000196865.4	ENST00000369301.3	protein_coding	protein_coding	protein_coding	protein_coding	0	185	2	6.81573	6.8635	6.91127	0.00356503	1.90368e-4	0.0383188	0.0043642
chr4	23801329	23801429	2208703	0	-	0.36	(0.33,0.36]	chr4	223250	2	SS5_PROX	SS5_PROX:INTRON	PPARGC1A	ENSG00000109819.9	ENST00000509702.5:ENST00000264867.7:ENST00000613098.4:ENST00000506055.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	185	2	6.50517	6.863355	7.22154	0.0050376	4.21166e-5	0.0464868	0.0014546
chr17	75891712	75891812	6973485	0	-	0.56	(0.523,0.58]	chr17	711546	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRIM65	ENSG00000141569.12	ENST00000591668.5:ENST00000592642.1:ENST00000269383.8:ENST00000648382.1:ENST00000543309.5:ENST00000540128.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	180	2	6.6256	6.86317	7.10074	0.00333843	3.53278e-5	0.0368376	0.00126913
chr2	235999510	235999610	1067611	0	+	0.48	(0.45,0.485]	chr2	115748	305	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5:ENST00000418654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	188	2	6.54668	6.86309	7.1795	0.00137948	2.40818e-4	0.0226729	0.00517788
chr16	89489284	89489376	6661728	0	-	0.521739	(0.485,0.523]	chr16	666757	2	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	181	2	6.756	6.862780000000001	6.96956	0.00171649	1.07056e-4	0.025659	0.00288045
chr17	43545814	43545914	6739023	0	+	0.67	(0.58,1]	chr17	678633	6	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	366	2	5.6555	6.862725	8.06995	5.47978e-5	7.9562e-6	0.00409825	4.36503e-4
chr22	32819995	32820095	7717809	0	+	0.52	(0.485,0.523]	chr22	807776	175	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	0	220	2	6.00341	6.862355	7.7213	9.07333e-4	3.80885e-4	0.0132726	0.0111772
chr1	246116205	246116305	701944	0	-	0.42	(0.419,0.45]	chr1	82410	199	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	189	2	6.61516	6.862325	7.10949	0.00251897	3.27987e-4	0.031696	0.00646148
chr3	149179756	149179850	1939224	0	-	0.308511	(0.29,0.33]	chr3	197323	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CP	ENSG00000047457.14	ENST00000481169.5:ENST00000264613.11:ENST00000460674.5:ENST00000494544.1:ENST00000490639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	199	2	6.27778	6.86221	7.44664	5.66223e-4	4.58752e-4	0.0138751	0.00821903
chr10	75697864	75697964	4523142	0	+	0.46	(0.45,0.485]	chr10	432271	499	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	181	2	6.66919	6.8618500000000004	7.05451	0.0035963	5.46803e-5	0.0384878	0.00175188
chr13	113521530	113521630	5658494	0	+	0.47	(0.45,0.485]	chr13	555716	4	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	482	2	5.25335	6.861750000000001	8.47015	9.3484e-4	6.31876e-7	0.0182962	7.77516e-5
chr12	111894753	111894853	5330955	0	+	0.44	(0.419,0.45]	chr12	520018	18	UTR3	UTR3:EXON_MRNA:INTRON	MAPKAPK5	ENSG00000089022.14	ENST00000550735.7:ENST00000547915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	184	2	6.80854	6.861475	6.91441	0.00425752	1.45031e-4	0.0422596	0.00359413
chr19	18843679	18843779	7224811	0	+	0.47	(0.45,0.485]	chr19	739340	100	INTRON	INTRON	UPF1	ENSG00000005007.13	ENST00000262803.10:ENST00000599848.5:ENST00000601981.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	187	2	6.56752	6.861475	7.15543	0.00144472	2.2698e-4	0.0232985	0.00495264
chr20	44407722	44407799	7482996	0	+	0.519481	(0.485,0.523]	chr20	779655	3	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	522	2	5.32214	6.86102	8.3999	9.22391e-5	1.14066e-5	0.00533264	5.64601e-4
chr22	33861355	33861455	7802280	0	-	0.47	(0.45,0.485]	chr22	817646	4	SS5_PROX	SS5_PROX:INTRON	LARGE1	ENSG00000133424.22	ENST00000397394.8:ENST00000413114.6:ENST00000676070.1:ENST00000674543.1:ENST00000676370.1:ENST00000354992.7:ENST00000402320.6:ENST00000675416.1:ENST00000676132.1:ENST00000674789.1:ENST00000675277.1:ENST00000434071.6:ENST00000432776.6:ENST00000423375.2:ENST00000430220.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	185	2	6.62829	6.86085	7.09341	0.00162663	1.90839e-4	0.0249683	0.0043642
chr6	131698115	131698214	3007514	0	+	0.424242	(0.419,0.45]	chr6	294103	41	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000414305.5:ENST00000357639.8:ENST00000358229.6	protein_coding	protein_coding	protein_coding	protein_coding	0	190	2	6.5755	6.860785	7.14607	0.00236107	3.64701e-4	0.0306624	0.00699922
chr19	55240444	55240533	7407337	0	-	0.505618	(0.485,0.523]	chr19	771264	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPP6R1	ENSG00000105063.19	ENST00000412770.7:ENST00000587283.5:ENST00000591323.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	181	2	6.55373	6.860715	7.1677	0.00378829	3.05856e-5	0.0396337	0.00114404
chr4	158829625	158829725	2157166	0	+	0.41	(0.39,0.419]	chr4	218575	4	SS5_PROX	SS5_PROX:INTRON	FNIP2	ENSG00000052795.13	ENST00000264433.11:ENST00000504704.6:ENST00000512986.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	240	2	5.83691	6.860685	7.88446	0.00215135	4.96355e-4	0.0241566	0.0129428
chr5	301780	301880	2377940	0	+	0.58	(0.523,0.58]	chr5	237467	250	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	179	2	6.83832	6.860415	6.88251	0.00223061	6.90788e-5	0.0297064	0.00208248
chr20	47532005	47532105	7488875	0	+	0.36	(0.33,0.36]	chr20	780647	296	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	0	182	2	6.81836	6.860105	6.90185	0.00244473	1.36209e-4	0.0311837	0.00344204
chr5	1498682	1498781	2609726	0	-	0.424242	(0.419,0.45]	chr5	259859	34	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000514484.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	550	2	5.91861	6.859675	7.80074	3.88514e-4	1.13359e-5	0.0113333	5.61766e-4
chr9	134412989	134413088	4261563	0	+	0.636364	(0.58,1]	chr9	406352	35	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000481739.2:ENST00000356384.4:ENST00000672570.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	193	2	6.26544	6.859674999999999	7.45391	2.34376e-4	2.06156e-4	0.00863036	0.00461335
chr20	46724840	46724940	7488454	0	+	0.45	(0.419,0.45]	chr20	780624	4	SS3_PROX	SS3_PROX:INTRON	SLC2A10	ENSG00000197496.6	ENST00000359271.4:ENST00000611837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	187	2	6.67269	6.859545000000001	7.0464	0.00281529	2.80959e-4	0.0336649	0.00578259
chr12	6339790	6339889	5362105	0	-	0.515152	(0.485,0.523]	chr12	525042	52	INTRON	INTRON	TNFRSF1A	ENSG00000067182.8	ENST00000534885.5:ENST00000162749.7:ENST00000543995.5:ENST00000540022.5:ENST00000539372.5:ENST00000366159.8:ENST00000543048.5:ENST00000440083.6:ENST00000536194.1:ENST00000535958.1:ENST00000538363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	1040	2	6.78935	6.85946	6.92957	3.11815e-5	2.57327e-7	0.00310936	4.27046e-5
chr12	132531076	132531175	5352926	0	+	0.656566	(0.58,1]	chr12	523670	27	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	174	2	6.76083	6.85911	6.95739	7.23847e-4	4.22142e-5	0.0158739	0.0014546
chr16	12170816	12170916	6391576	0	+	0.59	(0.58,1]	chr16	631959	352	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	176	2	6.46212	6.85908	7.25604	0.00211728	7.89156e-6	0.028892	4.34116e-4
chr9	133734303	133734403	4427926	0	-	0.39	(0.36,0.39]	chr9	423135	1	SS3_PROX	SS3_PROX:INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000427237.6:ENST00000298628.6	protein_coding	protein_coding	protein_coding	protein_coding	1	498	2	5.18046	6.8589	8.53734	0.00132362	9.57113e-7	0.0222129	1.0193e-4
chr17	16161140	16161238	6863299	0	-	0.377551	(0.36,0.39]	chr17	695515	19	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000395851.5:ENST00000395848.5:ENST00000411510.5:ENST00000582357.5:ENST00000436828.5:ENST00000460276.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	183	2	6.82481	6.858365	6.89192	0.00304757	1.5953e-4	0.0351468	0.00385227
chr11	70811668	70811768	5062400	0	-	0.44	(0.419,0.45]	chr11	492713	41	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	191	2	6.53472	6.858225	7.18173	0.00221619	4.06527e-4	0.0295806	0.00755833
chr2	235782967	235783067	1065438	0	+	0.4	(0.39,0.419]	chr2	115700	321	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	192	2	6.47978	6.857825	7.23587	0.00168028	4.14458e-4	0.0253887	0.00767522
chr11	68511741	68511840	4883992	0	+	0.464646	(0.45,0.485]	chr11	470702	61	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	180	2	6.78358	6.857445	6.93131	0.00291315	7.8924e-5	0.0342042	0.0022885
chr1	227767442	227767542	357647	0	+	0.38	(0.36,0.39]	chr1	40318	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	SNAP47	ENSG00000143740.15	ENST00000681827.1:ENST00000679575.1:ENST00000680854.1:ENST00000681006.1:ENST00000366760.5:ENST00000681447.1:ENST00000680992.1:ENST00000680695.1:ENST00000366759.9:ENST00000315781.10:ENST00000681685.1:ENST00000681678.1:ENST00000681242.1:ENST00000681149.1:ENST00000418653.6:ENST00000617596.5:ENST00000681929.1:ENST00000478768.3:ENST00000426344.6:ENST00000680202.1:ENST00000679561.1:ENST00000681465.1:ENST00000491439.2:ENST00000681554.1:ENST00000681252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	186	2	6.47612	6.856389999999999	7.23666	0.00632423	4.92653e-5	0.0524897	0.00162872
chr9	135836864	135836964	4431115	0	-	0.48	(0.45,0.485]	chr9	423507	89	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	181	2	6.59951	6.855945	7.11238	0.00408353	4.5955e-5	0.0413652	0.00154731
chr7	105716613	105716713	3670085	0	-	0.53	(0.523,0.58]	chr7	353945	251	INTRON	INTRON	ATXN7L1	ENSG00000146776.15	ENST00000419735.8	protein_coding	protein_coding	protein_coding	protein_coding	0	179	2	6.6256	6.8559	7.0862	0.00333843	3.69579e-5	0.0368376	0.00131447
chr1	43965286	43965379	110814	0	+	0.376344	(0.36,0.39]	chr1	13723	6	INTRON	INTRON	IPO13	ENSG00000117408.11	ENST00000372343.8	protein_coding	protein_coding	protein_coding	protein_coding	0	187	2	6.43704	6.855795	7.27455	0.00676148	4.41219e-5	0.0544904	0.00150124
chr3	51664014	51664113	1472180	0	+	0.414141	(0.39,0.419]	chr3	157989	7	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	0	202	2	6.10302	6.85474	7.60646	0.0120635	1.67678e-5	0.0745226	7.40492e-4
chr5	109702235	109702335	2503499	0	+	0.32	(0.29,0.33]	chr5	248829	113	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5	protein_coding	protein_coding	protein_coding	protein_coding	0	199	2	6.25213	6.854385000000001	7.45664	5.54648e-4	4.92548e-4	0.0137234	0.00865377
chr4	10102999	10103098	2195680	0	-	0.414141	(0.39,0.419]	chr4	222412	35	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	182	2	6.75426	6.854315	6.95437	0.00400086	1.11888e-4	0.0409634	0.00298349
chr17	39995724	39995823	6732281	0	+	0.434343	(0.419,0.45]	chr17	676982	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMD3	ENSG00000108344.15	ENST00000264639.9:ENST00000415039.7:ENST00000540504.2:ENST00000485835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	183	2	6.76217	6.854015	6.94586	0.00460997	1.32913e-4	0.0442426	0.00337193
chr10	24500379	24500479	4467522	0	+	0.45	(0.419,0.45]	chr10	427307	48	INTRON	INTRON	KIAA1217	ENSG00000120549.19	ENST00000376462.5:ENST00000376452.7:ENST00000430453.6:ENST00000458595.5:ENST00000376456.8:ENST00000376454.8:ENST00000438429.5:ENST00000696626.1:ENST00000307544.10:ENST00000376451.4:ENST00000396445.5:ENST00000396446.5:ENST00000460373.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	183	2	6.7778	6.854010000000001	6.93022	0.00448826	1.38812e-4	0.0436138	0.00347953
chr13	52133588	52133688	5717203	0	-	0.43	(0.419,0.45]	chr13	561007	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEK3	ENSG00000136098.17	ENST00000620675.4:ENST00000611833.4:ENST00000618534.4:ENST00000550331.1:ENST00000610828.5:ENST00000617054.1:ENST00000618856.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	183	2	6.79325	6.85383	6.91441	0.00437084	1.45031e-4	0.0428189	0.00359413
chr16	81679028	81679128	6510101	0	+	0.54	(0.523,0.58]	chr16	645978	4	SS5_PROX	SS5_PROX:INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	3	1399	2	6.29324	6.85318	7.41312	3.43743e-5	4.5103e-8	0.00326	1.41059e-5
chr16	1736452	1736550	6371303	0	+	0.622449	(0.58,1]	chr16	628851	10	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	432	2	5.19493	6.853110000000001	8.51129	4.55617e-4	8.46752e-8	0.0122859	2.12887e-5
chr22	28445772	28445872	7779488	0	-	0.38	(0.36,0.39]	chr22	815741	28	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	0	186	2	6.45671	6.8530549999999995	7.2494	0.00653798	4.74739e-5	0.0535312	0.00158857
chr13	40628346	40628446	5692949	0	-	0.53	(0.523,0.58]	chr13	558751	652	INTRON	INTRON	FOXO1	ENSG00000150907.10	ENST00000379561.6:ENST00000655267.1:ENST00000660760.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	492	2	5.83658	6.85224	7.8679	2.42115e-4	3.03516e-6	0.00879906	2.2176e-4
chr11	64146554	64146654	5049043	0	-	0.62	(0.58,1]	chr11	490257	198	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	359	2	6.02292	6.851945000000001	7.68097	1.38011e-4	2.13917e-6	0.00651662	1.744e-4
chr18	79358454	79358554	7099870	0	+	0.63	(0.58,1]	chr18	722963	99	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000426216.6:ENST00000307671.12:ENST00000490210.6:ENST00000590477.5:ENST00000589951.5:ENST00000588921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	173	2	6.76083	6.851845	6.94286	7.47593e-4	4.22142e-5	0.0161372	0.0014546
chr3	194417306	194417404	1979011	0	-	0.581633	(0.58,1]	chr3	201300	18	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000429136.7:ENST00000645621.1:ENST00000461660.2:ENST00000685123.1:ENST00000642744.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	173	2	6.76083	6.851845	6.94286	7.47593e-4	4.22142e-5	0.0161372	0.0014546
chr19	5816798	5816897	7195554	0	+	0.515152	(0.485,0.523]	chr19	733105	110	INTRON	INTRON	NRTN	ENSG00000171119.3	ENST00000303212.3	protein_coding	protein_coding	protein_coding	protein_coding	0	178	2	6.80799	6.851805000000001	6.89562	0.0023441	7.04028e-5	0.0305023	0.00211367
chr3	64002486	64002583	1495438	0	+	0.412371	(0.39,0.419]	chr3	160390	31	UTR3	UTR3:EXON_MRNA	ATXN7	ENSG00000163635.20	ENST00000674280.1:ENST00000295900.10	protein_coding	protein_coding	protein_coding	protein_coding	0	186	2	6.62366	6.851765	7.07987	0.00223454	2.80749e-4	0.0297409	0.00578259
chr8	133296304	133296397	4084290	0	-	0.677419	(0.58,1]	chr8	388364	2	SS5_PROX	SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000522738.1:ENST00000523892.5:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	296	2	5.31036	6.85125	8.39214	0.00312721	2.51645e-5	0.0311915	0.00286876
chr2	47904516	47904592	1143252	0	-	0.539474	(0.523,0.58]	chr2	125014	4	INTRON	INTRON	FBXO11	ENSG00000138081.22	ENST00000403359.8:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	178	2	6.84845	6.850949999999999	6.85345	0.00216679	7.65992e-5	0.0292299	0.00224403
chr9	124491817	124491906	4402641	0	-	0.494382	(0.485,0.523]	chr9	419811	2	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	0	179	2	6.59033	6.85092	7.11151	0.00353829	3.63944e-5	0.0381878	0.00129856
chr10	18566161	18566261	4642390	0	-	0.4	(0.39,0.419]	chr10	443321	138	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	184	2	6.69986	6.850805	7.00175	0.00257379	2.27791e-4	0.0321387	0.00496195
chr22	28887159	28887259	7705312	0	+	0.4	(0.39,0.419]	chr22	806317	27	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7	protein_coding	protein_coding	protein_coding	protein_coding	2	547	2	5.25863	6.850795	8.44296	1.67839e-4	2.43857e-5	0.00724399	9.70723e-4
chr6	167964570	167964662	3074758	0	+	0.456522	(0.45,0.485]	chr6	298971	4	EXON_MRNA	EXON_MRNA:INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000392112.5:ENST00000400822.7:ENST00000447894.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7:ENST00000507704.5:ENST00000515794.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	662	2	5.18175	6.850429999999999	8.51911	4.37092e-4	5.38332e-7	0.0119969	6.95467e-5
chr5	87268166	87268261	2479170	0	+	0.568421	(0.523,0.58]	chr5	247011	4	UTR5	UTR5:EXON_MRNA	RASA1	ENSG00000145715.15	ENST00000274376.11:ENST00000515800.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	190	2	6.40865	6.85009	7.29153	9.18957e-4	2.80789e-4	0.0180726	0.00578259
chr5	180809875	180809939	2823314	0	-	0.640625	(0.58,1]	chr5	277056	1	SS5_PROX	SS5_PROX:INTRON	MGAT1	ENSG00000131446.17	ENST00000333055.8:ENST00000393340.7:ENST00000506889.1:ENST00000514438.1:ENST00000513431.5:ENST00000514760.1:ENST00000512080.1:ENST00000510341.1:ENST00000508702.1:ENST00000513149.1:ENST00000508090.1:ENST00000510962.1:ENST00000506033.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	172	2	6.8169	6.8500700000000005	6.88324	8.53086e-4	3.50609e-5	0.0173632	0.00126332
chr5	21503101	21503201	2392607	0	+	0.38	(0.36,0.39]	chr5	239071	5	INTRON	INTRON	GUSBP1	ENSG00000183666.18	ENST00000508260.5:ENST00000449061.3:ENST00000685731.1:ENST00000688956.1:ENST00000692922.1:ENST00000686144.1:ENST00000607545.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	185	2	6.47612	6.849965	7.22381	0.00632423	5.11391e-5	0.0524897	0.00167326
chr19	735441	735518	7184606	0	+	0.662338	(0.58,1]	chr19	730570	4	SS5_PROX	SS5_PROX:INTRON	PALM	ENSG00000099864.18	ENST00000338448.10:ENST00000264560.11:ENST00000589012.5:ENST00000593172.5:ENST00000633534.1:ENST00000592155.5:ENST00000590161.2:ENST00000587513.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	425	2	5.0207	6.84908	8.67746	7.05166e-5	1.25307e-5	0.00211595	0.00206868
chr1	1108661	1108761	380269	0	-	0.63	(0.58,1]	chr1	42816	14	INTRON	INTRON	C1orf159	ENSG00000131591.18	ENST00000379339.5:ENST00000379325.7:ENST00000421241.7:ENST00000467751.5:ENST00000477196.5:ENST00000434641.5:ENST00000482816.5:ENST00000462097.5:ENST00000475119.5:ENST00000472741.5:ENST00000480643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	184	2	6.1942	6.84905	7.5039	0.00368616	3.31459e-6	0.0389784	2.35778e-4
chr2	240623694	240623793	1075180	0	+	0.59596	(0.58,1]	chr2	116654	43	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	0	175	2	6.64169	6.84844	7.05519	5.81818e-4	6.2385e-5	0.0141176	0.00192539
chr20	25494093	25494192	7539894	0	-	0.626263	(0.58,1]	chr20	787018	22	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5:ENST00000461642.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	481	2	5.25146	6.84805	8.44464	2.21459e-5	6.35261e-6	0.00272688	3.73432e-4
chr1	246232623	246232723	703111	0	-	0.44	(0.419,0.45]	chr1	82422	390	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	198	2	6.16812	6.847519999999999	7.52692	0.0123115	2.53648e-5	0.0756356	9.97976e-4
chr1	204307136	204307236	645885	0	-	0.43	(0.419,0.45]	chr1	76581	4	SS5_PROX	SS5_PROX:INTRON	PLEKHA6	ENSG00000143850.16	ENST00000272203.8:ENST00000637508.1:ENST00000414478.1:ENST00000564627.2	protein_coding	protein_coding	protein_coding	protein_coding	0	187	2	6.42781	6.8466249999999995	7.26544	0.0080847	5.39706e-5	0.0602118	0.00173477
chr16	85522780	85522879	6518299	0	+	0.424242	(0.419,0.45]	chr16	646391	1635	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	187	2	6.59547	6.84628	7.09709	0.00257476	3.45753e-4	0.0321387	0.00672667
chr10	18570958	18571058	4642438	0	-	0.42	(0.419,0.45]	chr10	443321	186	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	182	2	6.7778	6.846105	6.91441	0.00448826	1.45031e-4	0.0436138	0.00359413
chr2	232888407	232888507	1383715	0	-	0.48	(0.45,0.485]	chr2	147928	3	SS3_PROX	SS3_PROX:INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000424488.5:ENST00000461944.1:ENST00000416114.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	526	2	5.31135	6.846024999999999	8.3807	1.25375e-4	1.43683e-5	0.00620907	6.61483e-4
chr9	124258561	124258661	4235500	0	+	0.6	(0.58,1]	chr9	402075	2	SS5_PROX	SS5_PROX:INTRON	NEK6	ENSG00000119408.17	ENST00000373603.5:ENST00000540326.5:ENST00000320246.10:ENST00000373600.7:ENST00000545174.5:ENST00000444973.5:ENST00000454453.5	protein_coding	protein_coding	protein_coding	protein_coding	0	171	2	6.82104	6.84596	6.87088	9.78215e-4	2.92911e-5	0.0187475	0.00110673
chr11	112255178	112255278	4942416	0	+	0.5	(0.485,0.523]	chr11	476600	173	INTRON	INTRON	PTS	ENSG00000150787.8	ENST00000531673.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	386	2	5.71975	6.84525	7.97075	2.27355e-4	1.42933e-5	0.00851514	6.59187e-4
chr16	89221821	89221906	6523480	0	+	0.458824	(0.45,0.485]	chr16	647075	3	SS3_PROX	SS3_PROX:INTRON	ZNF778	ENSG00000170100.14	ENST00000433976.7:ENST00000620195.4:ENST00000564906.5:ENST00000567651.5:ENST00000306502.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	182	2	6.46883	6.84521	7.22159	0.00516809	3.30215e-5	0.0472296	0.00120982
chr10	18571357	18571457	4642442	0	-	0.38	(0.36,0.39]	chr10	443321	190	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	182	2	6.75506	6.84485	6.93464	0.00282234	1.93748e-4	0.0337022	0.00442349
chr4	177435676	177435775	2365536	0	-	0.575758	(0.523,0.58]	chr4	236152	8	INTRON	INTRON	AGA	ENSG00000038002.9	ENST00000264595.7:ENST00000502310.5:ENST00000506853.5:ENST00000510635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	177	2	6.67755	6.844385	7.01122	0.00302793	4.65929e-5	0.0350226	0.00156314
chr3	13024495	13024594	1689381	0	-	0.393939	(0.39,0.419]	chr3	176542	20	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	0	183	2	6.53145	6.84432	7.15719	0.00589503	6.26794e-5	0.0506158	0.00193045
chr16	81614317	81614416	6509439	0	+	0.676768	(0.58,1]	chr16	645921	34	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	173	2	6.70249	6.844250000000001	6.98601	6.79156e-4	5.11463e-5	0.0153241	0.00167326
chr5	73834504	73834601	2453786	0	+	0.412371	(0.39,0.419]	chr5	244974	17	INTRON	INTRON	ARHGEF28	ENSG00000214944.10	ENST00000545377.5:ENST00000296794.10:ENST00000513042.7:ENST00000426542.6:ENST00000437974.5:ENST00000296799.8	protein_coding	protein_coding	protein_coding	protein_coding	0	182	2	6.75448	6.84387	6.93326	0.00291102	1.95875e-4	0.0342042	0.00445752
chr16	67601241	67601341	6472465	0	+	0.43	(0.419,0.45]	chr16	642672	283	INTRON	INTRON	CTCF	ENSG00000102974.16	ENST00000646076.1:ENST00000644852.1:ENST00000264010.10:ENST00000401394.6:ENST00000646771.1:ENST00000642847.1:ENST00000644753.1:ENST00000642819.1:ENST00000645306.1:ENST00000643892.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	186	2	6.61516	6.843565	7.07197	0.00269142	3.27987e-4	0.0329086	0.00646148
chr16	29269014	29269114	6433527	0	+	0.51	(0.485,0.523]	chr16	636745	169	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	202	2	6.1777	6.84298	7.50826	5.88357e-4	5.64449e-4	0.0142143	0.00950156
chr12	3109192	3109292	5158862	0	+	0.52	(0.485,0.523]	chr12	501337	251	INTRON	INTRON	TSPAN9	ENSG00000011105.14	ENST00000537971.5:ENST00000444315.6:ENST00000011898.10:ENST00000649909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	208	2	6.09319	6.842535	7.59188	7.11715e-4	4.96381e-4	0.0129428	0.0112082
chr22	19909983	19910082	7765144	0	-	0.525253	(0.523,0.58]	chr22	813988	106	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	177	2	6.64312	6.8424	7.04168	0.00323048	4.24161e-5	0.0362983	0.00145737
chr8	30421150	30421249	3788531	0	+	0.515152	(0.485,0.523]	chr8	364885	228	INTRON	INTRON	RBPMS	ENSG00000157110.16	ENST00000320203.8:ENST00000339877.8:ENST00000287771.9:ENST00000397323.9:ENST00000517860.5:ENST00000520161.5:ENST00000523115.5:ENST00000519647.5:ENST00000521816.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	445	2	5.02096	6.84202	8.66308	1.27893e-4	5.265e-5	0.00402888	0.00328053
chr12	113837185	113837285	5509240	0	-	0.51	(0.485,0.523]	chr12	542458	135	INTRON	INTRON	RBM19	ENSG00000122965.11	ENST00000545145.6:ENST00000392561.7:ENST00000261741.10:ENST00000552384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	385	2	5.92167	6.841825	7.76198	3.50313e-4	7.43044e-6	0.0106878	4.17372e-4
chr6	107435297	107435397	3224595	0	-	0.38	(0.36,0.39]	chr6	312575	1006	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9:ENST00000369031.4	protein_coding	protein_coding	protein_coding	protein_coding	0	189	2	6.48035	6.84153	7.20271	0.0017314	4.10333e-4	0.0257605	0.00761562
chr17	80609697	80609797	6809550	0	+	0.46	(0.45,0.485]	chr17	687810	160	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	178	2	6.73566	6.841480000000001	6.9473	0.00318291	7.52721e-5	0.0360488	0.00222212
chr11	77813801	77813901	5085379	0	-	0.34	(0.33,0.36]	chr11	494801	1	SS3_PROX	SS3_PROX:INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1:ENST00000530604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	189	2	6.44711	6.84144	7.23577	0.00130137	3.84375e-4	0.0220198	0.00726694
chr3	31885314	31885413	1729444	0	-	0.474747	(0.45,0.485]	chr3	179047	51	INTRON	INTRON	OSBPL10	ENSG00000144645.15	ENST00000396556.7:ENST00000438237.6:ENST00000480671.5:ENST00000485205.5:ENST00000467955.5:ENST00000466604.5:ENST00000479173.1:ENST00000463504.5:ENST00000452791.1:ENST00000465626.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	181	2	6.66742	6.841355	7.01529	0.00188703	1.70557e-4	0.0271069	0.00403679
chr18	79356961	79357060	7099855	0	+	0.626263	(0.58,1]	chr18	722963	84	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000426216.6:ENST00000307671.12:ENST00000490210.6:ENST00000590477.5:ENST00000589951.5:ENST00000588921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	367	2	5.5158	6.8413450000000005	8.16689	4.34068e-5	1.29942e-5	0.00364716	6.18748e-4
chr4	1215317	1215403	2179818	0	-	0.476744	(0.45,0.485]	chr4	220917	5	INTRON	INTRON	CTBP1	ENSG00000159692.16	ENST00000382952.8:ENST00000290921.10:ENST00000504092.5:ENST00000510739.1:ENST00000511907.1:ENST00000505826.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	178	2	6.71933	6.84122	6.96311	0.00328012	7.18212e-5	0.0367219	0.00214399
chr16	87739724	87739824	6656478	0	-	0.53	(0.523,0.58]	chr16	665892	87	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	177	2	6.6256	6.841135	7.0566700000000004	0.00333843	4.04959e-5	0.0368376	0.00140723
chr1	1108066	1108165	380263	0	-	0.606061	(0.58,1]	chr1	42816	8	INTRON	INTRON	C1orf159	ENSG00000131591.18	ENST00000379339.5:ENST00000379325.7:ENST00000421241.7:ENST00000467751.5:ENST00000477196.5:ENST00000434641.5:ENST00000482816.5:ENST00000462097.5:ENST00000475119.5:ENST00000472741.5:ENST00000480643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	177	2	6.33437	6.84104	7.34771	0.00276493	5.73693e-6	0.0332418	3.48335e-4
chr12	132530678	132530777	5352922	0	+	0.747475	(0.58,1]	chr12	523670	23	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	177	2	6.5343	6.840535	7.14677	4.73371e-4	8.82891e-5	0.0125708	0.00248664
chr8	38768095	38768195	3802236	0	+	0.47	(0.45,0.485]	chr8	365828	103	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	526	2	5.23422	6.840450000000001	8.44668	1.09451e-4	1.83542e-5	0.00583571	7.93031e-4
chr17	82005741	82005841	6815354	0	+	0.7	(0.58,1]	chr17	688641	15	EXON_MRNA	EXON_MRNA:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	753	2	5.32624	6.840225	8.35421	2.75934e-5	7.69104e-7	0.00296016	8.86533e-5
chr6	169650942	169651039	3304373	0	-	0.474227	(0.45,0.485]	chr6	319869	13	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	179	2	6.76085	6.839655	6.91846	0.00226513	1.3016e-4	0.0300628	0.00332369
chr18	58285313	58285413	7073881	0	+	0.55	(0.523,0.58]	chr18	721178	282	INTRON	INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000676223.1:ENST00000675147.1:ENST00000592846.5:ENST00000675801.1:ENST00000456986.5:ENST00000675502.1:ENST00000675137.1:ENST00000357895.9:ENST00000435432.6:ENST00000586263.5:ENST00000456173.6:ENST00000676251.1:ENST00000676226.1:ENST00000675865.1:ENST00000588494.5:ENST00000675221.1:ENST00000588066.5:ENST00000431212.6:ENST00000586268.5:ENST00000587190.5:ENST00000585323.5:ENST00000674636.1:ENST00000674856.1:ENST00000675434.1:ENST00000635997.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	233	2	5.80873	6.839214999999999	7.8697	0.00145893	2.83668e-4	0.0184991	0.00957277
chr5	302578	302678	2377948	0	+	0.59	(0.58,1]	chr5	237467	258	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	176	2	6.55642	6.838805000000001	7.12119	5.01526e-4	8.22236e-5	0.0129939	0.00236215
chr2	134302634	134302734	897262	0	+	0.39	(0.36,0.39]	chr2	101215	317	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	0	182	2	6.70044	6.83828	6.97612	0.00261876	2.25359e-4	0.0324697	0.00492301
chr6	170397971	170398071	3076559	0	+	0.6	(0.58,1]	chr6	299192	20	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	0	180	2	6.24245	6.838175	7.4339	0.00334087	4.24175e-6	0.0368376	2.81464e-4
chr10	132766046	132766146	4619133	0	+	0.54	(0.523,0.58]	chr10	441206	2	SS5_PROX	SS5_PROX:INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000445580.1	protein_coding	protein_coding	protein_coding	protein_coding	0	176	2	6.71116	6.837725	6.96429	0.00284169	5.38186e-5	0.033773	0.0017322
chr16	14875522	14875606	6402500	0	+	0.488095	(0.485,0.523]	chr16	632480	1	SS5_PROX	SS5_PROX:INTRON	NOMO1	ENSG00000103512.16	ENST00000287667.12	protein_coding	protein_coding	protein_coding	protein_coding	0	187	2	6.42823	6.83752	7.24681	9.94865e-4	2.78987e-4	0.0189547	0.00577243
chr1	1031319	1031418	1028	0	+	0.525253	(0.523,0.58]	chr1	166	85	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	176	2	6.79194	6.837225	6.88251	0.00243746	6.90788e-5	0.0311222	0.00208248
chr5	139652764	139652864	2549688	0	+	0.4	(0.39,0.419]	chr5	253168	12	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	0	180	2	6.81643	6.837160000000001	6.85789	0.0035848	1.46825e-4	0.0384108	0.00363163
chr20	32131413	32131513	7454388	0	+	0.43	(0.419,0.45]	chr20	775905	149	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000442842.5:ENST00000450829.5:ENST00000217315.9:ENST00000417389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	428	2	5.3042	6.83686	8.36952	2.4723e-4	9.45486e-5	0.00888713	0.00262417
chr2	24589552	24589652	727964	0	+	0.47	(0.45,0.485]	chr2	84999	46	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000405141.5:ENST00000407230.5:ENST00000483904.5:ENST00000288599.9:ENST00000395856.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	183	2	6.56752	6.836774999999999	7.10603	0.00158793	2.2698e-4	0.0245893	0.00495264
chr1	210654119	210654219	332873	0	+	0.47	(0.45,0.485]	chr1	37390	301	INTRON	INTRON	HHAT	ENSG00000054392.13	ENST00000541565.5:ENST00000413764.6:ENST00000261458.8:ENST00000537898.5:ENST00000545154.5:ENST00000367010.5:ENST00000367009.2	protein_coding	protein_coding	protein_coding	protein_coding	0	201	2	6.01306	6.836685	7.66031	0.0113949	8.50368e-6	0.0723462	4.57175e-4
chrX	2383160	2383260	7967675	0	-	0.42	(0.419,0.45]	chrX	834355	448	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	408	2	5.804	6.8366299999999995	7.86926	6.33602e-4	2.19141e-5	0.0147865	8.99734e-4
chr6	7211354	7211448	2839121	0	+	0.43617	(0.419,0.45]	chr6	277962	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	1119	2	6.43448	6.835744999999999	7.23701	1.44175e-4	2.71296e-7	0.00670471	4.4236e-5
chr9	35728504	35728603	4298429	0	-	0.494949	(0.485,0.523]	chr9	411216	24	INTRON	INTRON	TLN1	ENSG00000137076.21	ENST00000314888.10:ENST00000378192.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	176	2	6.69488	6.83568	6.97648	0.00290687	5.50755e-5	0.0342042	0.00176017
chr19	48908665	48908764	7280432	0	+	0.515152	(0.485,0.523]	chr19	748048	24	INTRON	INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000424608.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	383	2	5.73572	6.83567	7.93562	2.44592e-4	1.35768e-5	0.00884339	6.38969e-4
chr15	101354343	101354443	6363082	0	-	0.44	(0.419,0.45]	chr15	627201	62	INTRON	INTRON	PCSK6	ENSG00000140479.18	ENST00000677364.1:ENST00000676598.1:ENST00000558951.5:ENST00000398185.6:ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000679007.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000559605.1:ENST00000560902.5:ENST00000611967.4:ENST00000615296.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	412	2	5.97108	6.83514	7.6992	8.67988e-4	1.33068e-5	0.0175702	6.29703e-4
chr2	216460997	216461097	1024846	0	+	0.35	(0.33,0.36]	chr2	111758	95	INTRON	INTRON	SMARCAL1	ENSG00000138375.13	ENST00000357276.9:ENST00000358207.9:ENST00000392128.6	protein_coding	protein_coding	protein_coding	protein_coding	0	187	2	6.46923	6.835095	7.20096	0.00139094	3.61814e-4	0.022808	0.0069669
chr5	136139148	136139248	2541338	0	+	0.4	(0.39,0.419]	chr5	252228	48	INTRON	INTRON	SMAD5	ENSG00000113658.18	ENST00000545279.6:ENST00000545620.5:ENST00000511116.5:ENST00000507118.5:ENST00000514777.1:ENST00000509297.6:ENST00000509962.5:ENST00000515005.1:ENST00000506223.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	181	2	6.56805	6.835075	7.1021	0.00553508	7.34431e-5	0.0491917	0.00217924
chr6	31652234	31652313	3119045	0	-	0.620253	(0.58,1]	chr6	303156	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BAG6	ENSG00000204463.14	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.2:ENST00000375976.8:ENST00000362049.10:ENST00000439687.6:ENST00000437771.5:ENST00000435080.5:ENST00000456622.5:ENST00000451898.5:ENST00000424480.5:ENST00000424176.5:ENST00000441054.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	420	2	5.43928	6.83505	8.23082	2.57647e-4	2.39537e-7	0.00908087	4.07877e-5
chr2	237578909	237579004	1388034	0	-	0.410526	(0.39,0.419]	chr2	148326	9	EXON_MRNA	EXON_MRNA:INTRON	RAB17	ENSG00000124839.13	ENST00000392001.6:ENST00000264601.8:ENST00000477149.5:ENST00000409576.1:ENST00000414278.1:ENST00000409822.1:ENST00000411462.5:ENST00000430445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	2796	2	6.4678	6.834910000000001	7.20202	6.4518e-6	2.4955e-6	0.00153653	1.94212e-4
chr19	36489212	36489312	7369766	0	-	0.65	(0.58,1]	chr19	764032	4	SS5_PROX	SS5_PROX:INTRON	ZNF566	ENSG00000186017.16	ENST00000493391.6:ENST00000392170.7:ENST00000452939.7:ENST00000427002.2:ENST00000424129.7:ENST00000434377.6:ENST00000472909.6:ENST00000460937.5:ENST00000480361.1:ENST00000494354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	176	2	6.33437	6.834664999999999	7.33496	0.00276493	5.99783e-6	0.0332418	3.5765e-4
chr14	30563640	30563740	5769311	0	+	0.37	(0.36,0.39]	chr14	565792	24	INTRON	INTRON	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000438909.6:ENST00000544007.5:ENST00000550944.5:ENST00000552488.1:ENST00000648008.1:ENST00000553504.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	493	2	5.55621	6.833825	8.11144	6.42992e-4	3.58462e-6	0.0148938	2.51052e-4
chr12	49375181	49375281	5225245	0	+	0.42	(0.419,0.45]	chr12	507159	35	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549538.5:ENST00000549412.5:ENST00000550643.5:ENST00000548654.5:ENST00000548710.5:ENST00000549179.5:ENST00000548377.5:ENST00000549298.5:ENST00000552918.6:ENST00000549375.5:ENST00000553127.5:ENST00000321898.10:ENST00000551540.5:ENST00000548777.5:ENST00000552171.1:ENST00000547865.5:ENST00000548388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	409	2	5.90909	6.8323	7.75551	7.82328e-4	1.60208e-5	0.0165897	7.1852e-4
chr20	62336986	62337086	7584279	0	-	0.57	(0.523,0.58]	chr20	792663	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	LAMA5	ENSG00000130702.15	ENST00000252999.7:ENST00000474128.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	177	2	6.53464	6.832015	7.12939	0.00395533	3.23178e-5	0.0406092	0.00118877
chr22	48794199	48794299	7752212	0	+	0.64	(0.58,1]	chr22	812294	424	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000336769.9	protein_coding	protein_coding	protein_coding	protein_coding	0	307	2	5.20223	6.83113	8.46003	0.00411607	2.1331e-5	0.0374453	0.00267833
chr16	953852	953952	6531572	0	-	0.59	(0.58,1]	chr16	648706	1	SS5_PROX	SS5_PROX:INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1:ENST00000566609.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	177	2	6.48899	6.83045	7.17191	4.47193e-4	1.02074e-4	0.0121697	0.00277572
chr5	1055481	1055581	2608375	0	-	0.57	(0.523,0.58]	chr5	259538	16	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10:ENST00000634447.1	protein_coding	protein_coding	protein_coding	protein_coding	0	175	2	6.72769	6.82991	6.93213	0.00275419	5.9384e-5	0.0332418	0.00185705
chr18	80185739	80185839	7183137	0	-	0.56	(0.523,0.58]	chr18	730364	22	INTRON	INTRON	PARD6G	ENSG00000178184.16	ENST00000353265.8:ENST00000470488.2:ENST00000463384.1	protein_coding	protein_coding	protein_coding	protein_coding	0	175	2	6.74402	6.8299	6.91578	0.00267018	6.24234e-5	0.0327654	0.00192539
chrX	2393473	2393572	7967779	0	-	0.646465	(0.58,1]	chrX	834361	6	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	169	2	6.7889099999999996	6.829895	6.87088	0.00104954	2.92911e-5	0.0194601	0.00110673
chr18	74623281	74623381	7089504	0	+	0.53	(0.523,0.58]	chr18	722412	250	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000582337.5	protein_coding	protein_coding	protein_coding	protein_coding	0	175	2	6.76017	6.829705	6.89924	0.00258949	6.56505e-5	0.0321874	0.00199995
chr7	47574586	47574685	3589565	0	-	0.40404	(0.39,0.419]	chr7	346159	171	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	188	2	6.458	6.82967	7.20134	0.00179028	4.39359e-4	0.0262802	0.00798319
chr2	20795894	20795994	1100139	0	-	0.42	(0.419,0.45]	chr2	119914	51	INTRON	INTRON	LDAH	ENSG00000118961.15	ENST00000619656.4:ENST00000541941.5:ENST00000440866.6:ENST00000435420.6:ENST00000403006.6:ENST00000237822.8:ENST00000381090.7:ENST00000626491.2:ENST00000432947.1:ENST00000412261.5:ENST00000402479.6:ENST00000419825.2	protein_coding	protein_coding	protein_coding	protein_coding	0	180	2	6.79325	6.82958	6.86591	0.00437084	1.65832e-4	0.0428189	0.00396002
chr12	132951658	132951758	5542048	0	-	0.4	(0.39,0.419]	chr12	547064	30	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	409	2	6.05386	6.8294999999999995	7.60514	8.44342e-4	8.97094e-6	0.017268	4.76029e-4
chr22	21447824	21447923	7689840	0	+	0.494949	(0.485,0.523]	chr22	804733	12	UTR3	UTR3:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	1	384	2	5.62006	6.829305	8.03855	1.9738e-4	1.96821e-5	0.00792255	8.29491e-4
chr9	129619218	129619317	4251023	0	+	0.363636	(0.36,0.39]	chr9	404743	97	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	0	181	2	6.51417	6.82918	7.14419	0.00592387	6.43862e-5	0.0506158	0.00197217
chr5	134962055	134962153	2540208	0	+	0.5	(0.485,0.523]	chr5	252058	15	UTR3	UTR3:EXON_MRNA:INTRON	PCBD2	ENSG00000132570.15	ENST00000512783.5:ENST00000254908.11:ENST00000504352.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	194	2	6.07443	6.8290500000000005	7.58367	0.00899749	8.23315e-6	0.0637469	4.47628e-4
chr4	82820836	82820936	2267985	0	-	0.44	(0.419,0.45]	chr4	228371	4	SS5_PROX	SS5_PROX:INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000515062.5:ENST00000264405.9:ENST00000505479.1:ENST00000505984.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	437	2	5.1837	6.828805	8.47391	2.0265e-4	1.33447e-4	0.00805364	0.00338446
chr2	215423149	215423249	1368540	0	-	0.38	(0.36,0.39]	chr2	145763	4	SS5_PROX	SS5_PROX:INTRON	FN1	ENSG00000115414.21	ENST00000421182.5:ENST00000323926.10:ENST00000336916.8:ENST00000357867.8:ENST00000359671.5:ENST00000443816.5:ENST00000446046.5:ENST00000354785.11:ENST00000432072.6:ENST00000356005.8:ENST00000426059.1	protein_coding	protein_coding	protein_coding	protein_coding	1	420	2	5.29624	6.82715	8.35806	1.90079e-4	8.61632e-5	0.0077873	0.00245309
chr6	130868622	130868717	3260220	0	-	0.294737	(0.29,0.33]	chr6	315458	12	EXON_MRNA	EXON_MRNA:INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000528282.5:ENST00000531410.5:ENST00000452150.6:ENST00000392427.7:ENST00000530757.5:ENST00000368128.6:ENST00000527411.5:ENST00000524581.5:ENST00000525271.5:ENST00000529208.5:ENST00000525193.5:ENST00000527659.5:ENST00000527017.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	192	2	6.27778	6.82622	7.37466	6.56748e-4	4.58752e-4	0.0150669	0.00821903
chr11	70876218	70876318	5063049	0	-	0.5	(0.485,0.523]	chr11	492728	32	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000645599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	179	2	6.6014	6.826005	7.05061	0.00146547	1.68998e-4	0.023492	0.0040111
chr17	81137999	81138098	6982882	0	-	0.636364	(0.58,1]	chr17	713268	31	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	356	2	5.63635	6.8259	8.01545	6.24389e-5	8.51218e-6	0.00438983	4.57175e-4
chr19	15642809	15642908	7215381	0	+	0.424242	(0.419,0.45]	chr19	737133	8	INTRON	INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	194	2	6.33542	6.825810000000001	7.3162	0.00174277	6.85495e-4	0.0258726	0.0108846
chr16	89303716	89303815	6659846	0	-	0.585859	(0.58,1]	chr16	666658	17	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	835	2	4.7065	6.825755	8.94501	6.47896e-6	4.5529e-6	0.00153653	2.94841e-4
chr6	13590594	13590690	2855853	0	+	0.34375	(0.33,0.36]	chr6	279046	12	INTRON	INTRON	SIRT5	ENSG00000124523.17	ENST00000680432.1:ENST00000681012.1:ENST00000397350.7:ENST00000680442.1:ENST00000680754.1:ENST00000679658.1:ENST00000681243.1:ENST00000680747.1:ENST00000681818.1:ENST00000680402.1:ENST00000679663.1:ENST00000379250.10:ENST00000680852.1:ENST00000679922.1:ENST00000681231.1:ENST00000359782.8:ENST00000606117.2:ENST00000379262.8:ENST00000681905.1:ENST00000680937.1:ENST00000680151.1:ENST00000680707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	177	2	6.7171	6.82564	6.93418	0.00343661	9.76753e-5	0.0375956	0.00268525
chr7	39957016	39957116	3352396	0	+	0.44	(0.419,0.45]	chr7	324178	42	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1	protein_coding	protein_coding	protein_coding	protein_coding	0	195	2	6.31147	6.824455	7.33744	0.00167748	7.29222e-4	0.0253722	0.0113963
chr12	132533863	132533963	5352954	0	+	0.65	(0.58,1]	chr12	523670	55	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	171	2	6.66224	6.824125	6.98601	6.79156e-4	5.8343e-5	0.0153241	0.00183149
chr15	56179703	56179803	6274850	0	-	0.43	(0.419,0.45]	chr15	618437	4	SS3_PROX	SS3_PROX:INTRON	RFX7	ENSG00000181827.16	ENST00000674082.1:ENST00000559447.8:ENST00000673997.1:ENST00000673948.1:ENST00000560792.4	protein_coding	protein_coding	protein_coding	protein_coding	1	405	2	5.64574	6.823645	8.00155	4.95034e-4	3.49978e-5	0.0129266	0.00126332
chr6	116177976	116178076	2989388	0	+	0.38	(0.36,0.39]	chr6	292828	326	INTRON	INTRON	NT5DC1	ENSG00000178425.14	ENST00000319550.9:ENST00000460749.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	178	2	6.77143	6.823214999999999	6.875	0.00377816	1.38592e-4	0.0396337	0.00347765
chr8	127850138	127850237	3918344	0	+	0.525253	(0.523,0.58]	chr8	374180	35	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000655594.1	lncRNA	lncRNA	lncRNA	lncRNA	0	194	2	6.04792	6.822755000000001	7.59759	0.00948306	7.31734e-6	0.0656057	4.11658e-4
chr17	35073754	35073854	6888043	0	-	0.42	(0.419,0.45]	chr17	699071	37	INTRON	INTRON	RFFL	ENSG00000092871.17	ENST00000315249.11:ENST00000584655.5:ENST00000447669.6:ENST00000584541.1:ENST00000414419.6:ENST00000581265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	196	2	6.28712	6.822744999999999	7.35837	0.00161543	7.76382e-4	0.0248769	0.0118807
chr10	18569659	18569758	4642425	0	-	0.40404	(0.39,0.419]	chr10	443321	173	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	182	2	6.60396	6.822649999999999	7.04134	0.00239617	2.96245e-4	0.0309227	0.00602194
chr1	43593101	43593199	107381	0	+	0.612245	(0.58,1]	chr1	13240	1	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	2	468	2	5.58091	6.82208	8.06325	5.56854e-5	1.93119e-6	0.00414032	1.62655e-4
chr7	74496207	74496307	3391789	0	+	0.53	(0.523,0.58]	chr7	327343	417	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	1	465	2	5.59988	6.821809999999999	8.04374	3.97387e-4	1.6997e-6	0.0114131	1.48831e-4
chr14	54630889	54630989	5820082	0	+	0.41	(0.39,0.419]	chr14	569049	624	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	655	2	4.78387	6.821645	8.85942	7.36722e-5	5.03749e-5	0.00480448	0.0016566
chr9	124492262	124492351	4402646	0	-	0.696629	(0.58,1]	chr9	419811	7	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	0	168	2	6.7889099999999996	6.821009999999999	6.85311	0.00104954	3.10807e-5	0.0194601	0.00115612
chr19	18468001	18468100	7347871	0	-	0.555556	(0.523,0.58]	chr19	761486	17	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	228	2	5.80873	6.820365	7.832	0.00145893	3.0665e-4	0.0184991	0.00996904
chr9	104799418	104799518	4361091	0	-	0.29	[0,0.29]	chr9	416220	2	SS5_PROX	SS5_PROX:INTRON	ABCA1	ENSG00000165029.17	ENST00000374736.8:ENST00000678995.1	protein_coding	protein_coding	protein_coding	protein_coding	0	190	2	6.22459	6.820325	7.41606	3.85451e-4	2.97747e-4	0.00982269	0.00727359
chr2	3294902	3295002	1081056	0	-	0.57	(0.523,0.58]	chr2	117633	122	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	174	2	6.79194	6.820195	6.84845	0.00243746	7.65992e-5	0.0311222	0.00224403
chr9	98153664	98153763	4352779	0	-	0.454545	(0.45,0.485]	chr9	415773	156	INTRON	INTRON	CORO2A	ENSG00000106789.13	ENST00000375077.5:ENST00000343933.9	protein_coding	protein_coding	protein_coding	protein_coding	0	181	2	6.54668	6.820045	7.09341	0.00162663	2.40818e-4	0.0249683	0.00517788
chr1	43558028	43558127	107019	0	+	0.636364	(0.58,1]	chr1	13192	37	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	184	2	6.29206	6.819845	7.34763	2.99474e-4	1.89825e-4	0.00982269	0.0043642
chr4	3365889	3365989	2005095	0	+	0.52	(0.485,0.523]	chr4	204663	225	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	174	2	6.69488	6.81978	6.94468	0.00290687	6.06735e-5	0.0342042	0.00188492
chr10	18573256	18573356	4642461	0	-	0.42	(0.419,0.45]	chr10	443321	209	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	181	2	6.67269	6.81977	6.96685	0.00323624	2.80959e-4	0.0363264	0.00578259
chr1	62279161	62279260	497623	0	-	0.50505	(0.485,0.523]	chr1	59382	37	INTRON	INTRON	KANK4	ENSG00000132854.19	ENST00000371153.9:ENST00000354381.3	protein_coding	protein_coding	protein_coding	protein_coding	0	174	2	6.7606	6.819745	6.87889	0.00256606	7.40532e-5	0.0320885	0.00219184
chr17	15465461	15465561	6860089	0	-	0.44	(0.419,0.45]	chr17	695067	120	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	403	2	5.71983	6.819625	7.91942	5.77112e-4	2.8125e-5	0.0140531	0.00107401
chr1	3470565	3470660	5814	0	+	0.578947	(0.523,0.58]	chr1	1229	6	INTRON	INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5	protein_coding	protein_coding	protein_coding	protein_coding	1	514	2	6.05143	6.8193649999999995	7.5873	1.53757e-4	7.56432e-6	0.00690885	4.21779e-4
chr7	223244	223344	3305887	0	+	0.61	(0.58,1]	chr7	320161	139	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	168	2	6.8169	6.81897	6.82104	9.78215e-4	3.50609e-5	0.0187475	0.00126332
chr19	36214421	36214521	7367439	0	-	0.54	(0.523,0.58]	chr19	763877	4	SS5_PROX	SS5_PROX:INTRON	ZNF565	ENSG00000196357.12	ENST00000304116.10:ENST00000355114.9:ENST00000392173.6:ENST00000591473.1:ENST00000587803.1:ENST00000586648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	174	2	6.81357	6.818295	6.82302	0.00229691	8.51182e-5	0.0302623	0.00242869
chr7	74496506	74496606	3391792	0	+	0.59	(0.58,1]	chr7	327343	420	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	1	422	2	5.67735	6.818215	7.95908	1.46643e-4	6.47783e-7	0.00675599	7.90643e-5
chr7	138578527	138578615	3503203	0	+	0.511364	(0.485,0.523]	chr7	337582	6	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6	protein_coding	protein_coding	protein_coding	protein_coding	0	175	2	6.55373	6.818155	7.08258	0.00378829	3.97904e-5	0.0396337	0.00138788
chr6	24185624	24185723	3108597	0	-	0.454545	(0.45,0.485]	chr6	301405	66	INTRON	INTRON	DCDC2	ENSG00000146038.12	ENST00000378454.8:ENST00000378450.6	protein_coding	protein_coding	protein_coding	protein_coding	0	201	2	6.13678	6.81811	7.49944	7.46272e-4	7.40531e-4	0.0160724	0.0115813
chr13	113350448	113350548	5753437	0	-	0.59	(0.58,1]	chr13	564103	2	SS5_PROX	SS5_PROX:INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	1	397	2	5.12053	6.817805	8.51508	5.04672e-5	1.86499e-5	0.00249265	0.00165834
chr20	26010178	26010275	7452325	0	+	0.587629	(0.58,1]	chr20	775551	5	EXON_LNCRNA	EXON_LNCRNA	ENSG00000287569	ENSG00000287569.1	ENST00000668826.1	lncRNA	lncRNA	lncRNA	lncRNA	3	1149	2	6.70902	6.81778	6.92654	6.93075e-6	2.85499e-8	0.00158369	1.03508e-5
chr17	57507146	57507245	6762285	0	+	0.474747	(0.45,0.485]	chr17	682142	195	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1:ENST00000674898.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	399	2	5.38466	6.817515	8.25037	1.63802e-4	4.90008e-5	0.00716963	0.00162093
chr14	96295660	96295760	6050274	0	-	0.39	(0.36,0.39]	chr14	593586	1	SS3_PROX	SS3_PROX:INTRON	ATG2B	ENSG00000066739.12	ENST00000359933.6:ENST00000261834.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	181	2	6.43704	6.817399999999999	7.19776	0.00676148	5.51524e-5	0.0544904	0.0017623
chr16	81640665	81640765	6509704	0	+	0.56	(0.523,0.58]	chr16	645926	186	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	202	2	6.09678	6.816515	7.53625	6.74499e-4	5.6173e-4	0.0138488	0.0108081
chr2	39474526	39474616	765378	0	+	0.366667	(0.36,0.39]	chr2	88616	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	MAP4K3-DT	ENSG00000231312.8	ENST00000659562.1:ENST00000426083.5:ENST00000667600.1:ENST00000443038.1:ENST00000451547.2:ENST00000671403.1:ENST00000658319.1:ENST00000445520.7:ENST00000658048.1:ENST00000422128.6:ENST00000670934.1:ENST00000449569.6:ENST00000425775.2:ENST00000662313.1:ENST00000658057.1:ENST00000668952.1:ENST00000446698.5	lncRNA	lncRNA	lncRNA	lncRNA	0	193	2	6.29617	6.816155	7.33614	0.00135217	6.68957e-4	0.0224546	0.0107572
chr11	61273098	61273198	5041307	0	-	0.61	(0.58,1]	chr11	488758	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10:ENST00000535710.1:ENST00000398808.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	427	2	5.76691	6.815805	7.8647	1.18404e-4	9.12155e-7	0.00606082	9.84472e-5
chr17	57477181	57477281	6761984	0	+	0.55	(0.523,0.58]	chr17	682137	321	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	460	2	5.13288	6.815565	8.49825	0.00103789	3.71224e-7	0.019365	5.4727e-5
chr17	29130398	29130495	6876466	0	-	0.381443	(0.36,0.39]	chr17	697994	15	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000590242.5:ENST00000528564.2:ENST00000528322.6:ENST00000585573.6:ENST00000533420.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	177	2	6.73967	6.81551	6.89135	0.00399663	1.32362e-4	0.0409578	0.00337119
chr14	67375146	67375245	5857971	0	+	0.373737	(0.36,0.39]	chr14	572675	2	INTRON	INTRON	EIF2S1	ENSG00000134001.15	ENST00000256383.11:ENST00000557310.5:ENST00000466499.6:ENST00000555876.1	protein_coding	protein_coding	protein_coding	protein_coding	0	179	2	6.68176	6.81518	6.9486	0.00275221	2.3726e-4	0.0332418	0.0051158
chr16	75234211	75234299	6644448	0	-	0.636364	(0.58,1]	chr16	664405	3	SS3_PROX	SS3_PROX:INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000566982.1:ENST00000563038.5:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	351	2	5.69305	6.815015000000001	7.93698	7.5303e-5	6.9672e-6	0.00484351	3.99493e-4
chr1	117434736	117434836	220069	0	+	0.45	(0.419,0.45]	chr1	24287	137	INTRON	INTRON	MAN1A2	ENSG00000198162.12	ENST00000356554.7:ENST00000449370.6	protein_coding	protein_coding	protein_coding	protein_coding	0	181	2	6.46688	6.8145	7.16212	0.00757951	7.24277e-5	0.0579104	0.00215979
chr16	14090923	14091023	6399590	0	+	0.44	(0.419,0.45]	chr16	632159	112	INTRON	INTRON	MRTFB	ENSG00000186260.17	ENST00000571589.6:ENST00000574998.5:ENST00000572400.5:ENST00000574045.5:ENST00000575537.5:ENST00000318282.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	178	2	6.71426	6.814335	6.91441	0.0050028	1.45031e-4	0.0463896	0.00359413
chr7	2763140	2763233	3534274	0	-	0.494624	(0.485,0.523]	chr7	341309	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	GNA12	ENSG00000146535.14	ENST00000275364.8:ENST00000407904.7:ENST00000491117.5:ENST00000496740.6:ENST00000471281.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	182	2	6.45105	6.81369	7.17633	0.00114421	2.61322e-4	0.0204418	0.00551565
chr2	3299692	3299792	1081104	0	-	0.45	(0.419,0.45]	chr2	117633	170	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	178	2	6.7778	6.81359	6.84938	0.00448826	1.73559e-4	0.0436138	0.0040962
chr20	25493699	25493798	7539890	0	-	0.565657	(0.523,0.58]	chr20	787018	18	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5:ENST00000461642.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	173	2	6.69445	6.81329	6.93213	0.00293287	5.9384e-5	0.0343709	0.00185705
chr17	49025217	49025317	6750301	0	+	0.38	(0.36,0.39]	chr17	680310	2	SS3_PROX	SS3_PROX:INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2:ENST00000515586.5:ENST00000499130.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	182	2	6.54378	6.81251	7.08124	0.00216352	3.45814e-4	0.0292299	0.00672667
chr3	37306527	37306627	1442039	0	+	0.35	(0.33,0.36]	chr3	153834	38	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	469	2	5.40063	6.811925	8.22322	7.25019e-4	1.94758e-6	0.0158761	1.63381e-4
chr10	18571557	18571657	4642444	0	-	0.42	(0.419,0.45]	chr10	443321	192	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	184	2	6.51388	6.811685000000001	7.10949	0.00251897	4.29619e-4	0.031696	0.00783248
chr2	178508079	178508178	964952	0	+	0.353535	(0.33,0.36]	chr2	105872	43	UTR3	UTR3:EXON_MRNA	PLEKHA3	ENSG00000116095.11	ENST00000234453.10	protein_coding	protein_coding	protein_coding	protein_coding	0	177	2	6.52407	6.81166	7.09925	0.00487053	6.04067e-5	0.0456282	0.00187976
chr7	139304636	139304736	3504700	0	+	0.45	(0.419,0.45]	chr7	337822	69	UTR3	UTR3:EXON_MRNA	UBN2	ENSG00000157741.15	ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	1	436	2	5.13036	6.81166	8.49296	1.95411e-4	1.55264e-4	0.00786834	0.00377804
chr10	18567560	18567660	4642404	0	-	0.4	(0.39,0.419]	chr10	443321	152	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	177	2	6.78978	6.81067	6.83156	0.00348989	1.77584e-4	0.0379065	0.00415615
chr15	57056053	57056153	6111718	0	+	0.39	(0.36,0.39]	chr15	601593	543	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	180	2	6.60454	6.81049	7.01644	0.0024343	2.93176e-4	0.0311222	0.00597401
chr16	12261242	12261342	6392481	0	+	0.64	(0.58,1]	chr16	631965	612	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	171	2	6.37822	6.810335	7.24245	0.00252415	8.27171e-6	0.031696	4.48419e-4
chrX	48819001	48819090	7879402	0	+	0.595506	(0.58,1]	chrX	826248	2	INTRON	INTRON	HDAC6	ENSG00000094631.21	ENST00000376619.6:ENST00000477528.5:ENST00000334136.11:ENST00000643659.1:ENST00000643374.1:ENST00000644068.1:ENST00000643934.1:ENST00000647398.1:ENST00000486227.5:ENST00000645643.1:ENST00000486665.5:ENST00000470942.1:ENST00000480525.5:ENST00000498808.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	349	2	5.99313	6.8103	7.62747	1.56462e-4	2.38232e-6	0.00697415	1.87577e-4
chr20	63598260	63598360	7586232	0	-	0.6	(0.58,1]	chr20	793063	4	SS3_PROX	SS3_PROX:INTRON	GMEB2	ENSG00000101216.11	ENST00000266068.5:ENST00000370069.5:ENST00000370077.2	protein_coding	protein_coding	protein_coding	protein_coding	0	167	2	6.59813	6.80989	7.02165	0.00158605	1.76307e-5	0.0245893	7.68293e-4
chr3	195112851	195112951	1981139	0	-	0.59	(0.58,1]	chr3	201655	188	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000437101.5:ENST00000473200.1:ENST00000429994.5:ENST00000356740.5:ENST00000418940.5:ENST00000491138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	414	2	5.28864	6.809564999999999	8.33049	3.6654e-4	1.65763e-7	0.0109836	3.22587e-5
chr19	1997963	1998061	7307773	0	-	0.408163	(0.39,0.419]	chr19	753493	1	INTRON	INTRON	BTBD2	ENSG00000133243.10	ENST00000255608.9:ENST00000589200.3:ENST00000590646.5:ENST00000587742.5:ENST00000588395.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	181	2	6.39551	6.8093699999999995	7.22323	0.00743138	5.17845e-5	0.057548	0.00168775
chr22	48702936	48703036	7751297	0	+	0.63	(0.58,1]	chr22	812283	92	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	185	2	6.23832	6.80933	7.38034	2.77767e-4	2.24165e-4	0.00947659	0.00490779
chr16	46906541	46906641	6442649	0	+	0.49	(0.485,0.523]	chr16	639008	3	SS3_PROX	SS3_PROX:INTRON	GPT2	ENSG00000166123.14	ENST00000340124.9:ENST00000562132.5:ENST00000440783.2	protein_coding	protein_coding	protein_coding	protein_coding	3	612	2	4.85954	6.809094999999999	8.75865	4.28995e-5	2.3639e-5	0.00362159	9.50005e-4
chr10	7722661	7722757	4442143	0	+	0.572917	(0.523,0.58]	chr10	425524	5	INTRON	INTRON	ITIH2	ENSG00000151655.19	ENST00000358415.9:ENST00000379587.4	protein_coding	protein_coding	protein_coding	protein_coding	0	180	2	6.28963	6.808725	7.32782	0.00618741	1.73343e-5	0.0519442	7.59912e-4
chr2	166127949	166128039	1302717	0	-	0.488889	(0.485,0.523]	chr2	139806	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	SCN1A	ENSG00000144285.23	ENST00000641603.1:ENST00000641575.1:ENST00000641996.1:ENST00000303395.9:ENST00000674923.1:ENST00000635750.1:ENST00000636194.1:ENST00000635776.1:ENST00000637988.1:ENST00000671940.1:ENST00000673490.1:ENST00000636759.1:ENST00000642141.1:ENST00000507401.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	175	2	6.66134	6.80847	6.9556	0.00176368	1.41724e-4	0.0260917	0.00352935
chr5	616607	616706	2378436	0	+	0.656566	(0.58,1]	chr5	237586	38	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6	protein_coding	protein_coding	protein_coding	protein_coding	0	167	2	6.77976	6.808305	6.83685	9.44859e-4	3.96539e-5	0.0183873	0.00138542
chr1	148604931	148605029	582788	0	-	0.387755	(0.36,0.39]	chr1	67245	59	INTRON	INTRON	NBPF14	ENSG00000270629.7	ENST00000606877.2	protein_coding	protein_coding	protein_coding	protein_coding	0	178	2	6.68176	6.808199999999999	6.93464	0.00282234	2.3726e-4	0.0337022	0.0051158
chr18	48658157	48658257	7057849	0	+	0.45	(0.419,0.45]	chr18	720311	211	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1:ENST00000589585.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	193	2	6.1199	6.80764	7.49538	0.0132894	2.78044e-5	0.0787251	0.00106588
chr2	73012558	73012658	1188928	0	-	0.34	(0.33,0.36]	chr2	128846	106	INTRON	INTRON	SFXN5	ENSG00000144040.13	ENST00000272433.7:ENST00000461352.5:ENST00000474528.5:ENST00000411783.5:ENST00000410065.5:ENST00000463277.5:ENST00000416579.5:ENST00000464825.5:ENST00000450185.5:ENST00000442582.1:ENST00000487508.5:ENST00000497144.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	179	2	6.40677	6.80761	7.20845	0.00599713	4.37819e-5	0.0509222	0.00149507
chr3	146148301	146148401	1936873	0	-	0.43	(0.419,0.45]	chr3	197036	237	INTRON	INTRON	PLOD2	ENSG00000152952.12	ENST00000282903.10:ENST00000360060.7:ENST00000494950.5:ENST00000469350.5:ENST00000480704.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	228	2	5.82848	6.807605000000001	7.78673	0.00242141	7.38434e-4	0.0261589	0.0160522
chrX	108483186	108483286	7931314	0	+	0.38	(0.36,0.39]	chrX	830055	203	INTRON	INTRON	COL4A5	ENSG00000188153.14	ENST00000328300.11:ENST00000361603.7:ENST00000470339.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	176	2	6.73967	6.807335	6.875	0.00399663	1.38592e-4	0.0409578	0.00347765
chr18	42079927	42080026	7055352	0	+	0.444444	(0.419,0.45]	chr18	720146	121	INTRON	INTRON	PIK3C3	ENSG00000078142.14	ENST00000262039.9:ENST00000398870.7:ENST00000593098.5:ENST00000588631.5:ENST00000588156.5:ENST00000587328.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	182	2	6.55525	6.807245	7.05924	0.00275242	3.84925e-4	0.0332418	0.00726694
chr17	78836772	78836872	6979849	0	-	0.46	(0.45,0.485]	chr17	712760	4	SS3_PROX	SS3_PROX:INTRON	USP36	ENSG00000055483.20	ENST00000589225.5:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10:ENST00000588086.6:ENST00000589424.5:ENST00000590546.6:ENST00000586531.5:ENST00000591942.6:ENST00000586896.2:ENST00000592907.5:ENST00000592275.5:ENST00000587783.5:ENST00000588365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	176	2	6.66742	6.807105	6.94679	0.00214762	1.70557e-4	0.0291055	0.00403679
chr1	121223308	121223408	226416	0	+	0.36	(0.33,0.36]	chr1	25070	354	INTRON	INTRON	SRGAP2C	ENSG00000171943.12	ENST00000367123.8:ENST00000304465.7	protein_coding	protein_coding	protein_coding	protein_coding	0	175	2	6.80103	6.80673	6.81243	0.00288508	1.4311e-4	0.03418	0.00355964
chr16	87738427	87738527	6656465	0	-	0.45	(0.419,0.45]	chr16	665892	74	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	177	2	6.73041	6.806335	6.88226	0.00486702	1.58518e-4	0.0456282	0.00384084
chr12	57345479	57345579	5440940	0	-	0.4	(0.39,0.419]	chr12	535502	41	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	0	180	2	6.584	6.80613	7.02826	0.00245351	3.12789e-4	0.0312688	0.00625974
chr20	37394973	37395071	7473052	0	+	0.591837	(0.58,1]	chr20	778188	3	INTRON	INTRON	SRC	ENSG00000197122.13	ENST00000692112.1:ENST00000692423.1:ENST00000373578.7:ENST00000373567.6:ENST00000373558.2:ENST00000358208.9:ENST00000489153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	347	2	5.93946	6.8058250000000005	7.67219	1.40886e-4	2.89075e-6	0.00661039	2.14723e-4
chr7	216360	216460	3305818	0	+	0.72	(0.58,1]	chr7	320161	70	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	351	2	5.61695	6.8057099999999995	7.99447	6.56507e-5	9.1144e-6	0.00450202	4.80303e-4
chr2	163713402	163713502	1296096	0	-	0.38	(0.36,0.39]	chr2	139073	1012	INTRON	INTRON	FIGN	ENSG00000182263.14	ENST00000409634.5:ENST00000333129.4:ENST00000482917.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	177	2	6.55124	6.80558	7.05992	0.0055566	8.20206e-5	0.049265	0.00236018
chr6	3146747	3146846	2828606	0	+	0.606061	(0.58,1]	chr6	277604	59	INTRON	INTRON	BPHL	ENSG00000137274.13	ENST00000434640.5:ENST00000430655.6:ENST00000424847.6:ENST00000433912.5:ENST00000380379.10:ENST00000490918.5:ENST00000380375.4:ENST00000488487.2:ENST00000423798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	387	2	5.16129	6.805540000000001	8.44979	4.39806e-5	2.18699e-5	0.0027064	0.00149886
chr22	31624805	31624897	7788313	0	-	0.652174	(0.58,1]	chr22	817184	6	INTRON	INTRON	PISD	ENSG00000241878.12	ENST00000460723.5:ENST00000439502.7:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5:ENST00000474017.5:ENST00000478893.5:ENST00000491342.1:ENST00000422020.5:ENST00000442379.1:ENST00000429683.1:ENST00000431201.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	166	2	6.68799	6.805445000000001	6.9229	0.00130716	2.46059e-5	0.0220198	9.771e-4
chr17	43545614	43545714	6739021	0	+	0.79	(0.58,1]	chr17	678633	4	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	479	2	5.03699	6.80491	8.57283	1.61941e-5	1.36069e-5	0.00232102	6.39223e-4
chr8	629837	629937	3932018	0	-	0.62	(0.58,1]	chr8	376005	22	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	167	2	6.74164	6.804790000000001	6.86794	8.82366e-4	4.4971e-5	0.0176886	0.00152119
chr9	137569233	137569332	4435756	0	-	0.59596	(0.58,1]	chr9	424466	37	INTRON	INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000475100.5:ENST00000472113.5:ENST00000485189.5:ENST00000467768.5:ENST00000477690.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	166	2	6.65271	6.80464	6.95657	0.00141059	2.19702e-5	0.0229261	8.99734e-4
chr11	96148709	96148809	5111623	0	-	0.44	(0.419,0.45]	chr11	496566	548	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	0	218	2	5.92632	6.804505	7.68269	0.00191339	8.94765e-4	0.0223437	0.0178289
chr9	34399896	34399993	4296606	0	-	0.525773	(0.523,0.58]	chr9	410635	17	UTR3	UTR3:EXON_MRNA:INTRON	FAM219A	ENSG00000164970.15	ENST00000651358.1:ENST00000379080.5:ENST00000379081.5:ENST00000379084.5:ENST00000379087.5:ENST00000379089.5:ENST00000445726.5:ENST00000297620.8	protein_coding	protein_coding	protein_coding	protein_coding	0	182	2	6.40865	6.804209999999999	7.19977	0.00110271	2.80789e-4	0.020005	0.00578259
chr16	66738841	66738941	6605871	0	-	0.43	(0.419,0.45]	chr16	660637	22	INTRON	INTRON	DYNC1LI2	ENSG00000135720.13	ENST00000258198.7:ENST00000443351.6:ENST00000440564.6:ENST00000566150.5:ENST00000568180.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	190	2	6.33542	6.804085000000001	7.27275	0.00188399	6.85495e-4	0.0271069	0.0108846
chr6	41721367	41721467	3132607	0	-	0.39	(0.36,0.39]	chr6	305481	156	INTRON	INTRON	TFEB	ENSG00000112561.19	ENST00000358871.6:ENST00000373033.6:ENST00000230323.8:ENST00000677531.1:ENST00000403298.9:ENST00000420312.6:ENST00000424495.2:ENST00000678831.1:ENST00000419396.6:ENST00000416140.6:ENST00000678871.1:ENST00000394283.5:ENST00000679237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	180	2	6.39688	6.80386	7.21084	0.00723998	5.30999e-5	0.0565323	0.00171796
chr6	36108546	36108646	2905122	0	+	0.52	(0.485,0.523]	chr6	284964	2	UTR3	UTR3:EXON_MRNA	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000468133.5:ENST00000229794.9	protein_coding	protein_coding	protein_coding	protein_coding	3	609	2	4.86519	6.803835	8.74248	4.44142e-5	2.32109e-5	0.0036832	9.36605e-4
chr21	45476662	45476745	7631036	0	+	0.433735	(0.419,0.45]	chr21	797685	2	SS5_PROX	SS5_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	177	2	6.6307	6.80367	6.97664	0.00576404	1.22002e-4	0.0500197	0.00318856
chr6	16760598	16760697	3104460	0	-	0.818182	(0.58,1]	chr6	300921	6	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000473388.6:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1:ENST00000467008.5:ENST00000498374.1:ENST00000492857.1:ENST00000479680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	172	2	6.51182	6.803485	7.09515	5.31842e-4	9.48877e-5	0.0134466	0.00262417
chr5	150508326	150508426	2565094	0	+	0.58	(0.523,0.58]	chr5	254952	1	SS5_PROX	SS5_PROX:INTRON	NDST1	ENSG00000070614.15	ENST00000522491.1:ENST00000519157.1:ENST00000524161.1:ENST00000523767.5:ENST00000518299.1:ENST00000518346.1:ENST00000261797.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	185	2	6.33678	6.802955	7.26913	9.60886e-4	3.44853e-4	0.0185615	0.00672121
chr5	59426996	59427096	2668403	0	-	0.33	(0.29,0.33]	chr5	264339	702	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	184	2	6.35213	6.8029399999999995	7.25375	8.4108e-4	3.72808e-4	0.0172456	0.00708918
chr1	43559921	43560021	107038	0	+	0.52	(0.485,0.523]	chr1	13192	56	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	1368	2	6.3182	6.802765	7.28733	3.21769e-5	7.58164e-8	0.00316962	1.98954e-5
chr21	35442569	35442669	7661385	0	-	0.46	(0.45,0.485]	chr21	801090	31	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000475045.6:ENST00000467692.5:ENST00000494829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	186	2	6.34422	6.802485	7.26075	0.00117955	4.24458e-4	0.020761	0.00777807
chr8	9772168	9772268	3754898	0	+	0.38	(0.36,0.39]	chr8	360882	4	SS3_PROX	SS3_PROX:INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	1	510	2	5.82936	6.8022	7.77504	3.77243e-4	9.98603e-6	0.011147	5.13591e-4
chr12	31722133	31722232	5409103	0	-	0.434343	(0.419,0.45]	chr12	529699	24	INTRON	INTRON	AMN1	ENSG00000151743.11	ENST00000281471.11:ENST00000537562.5:ENST00000541931.5:ENST00000536761.5:ENST00000542781.5:ENST00000535408.5:ENST00000537960.5:ENST00000457428.6:ENST00000541541.5:ENST00000422146.6:ENST00000509386.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	212	2	5.98805	6.80139	7.61473	0.00164584	0.00101372	0.0202325	0.0191342
chr2	42457667	42457767	1130864	0	-	0.61	(0.58,1]	chr2	123823	127	INTRON	INTRON	KCNG3	ENSG00000171126.8	ENST00000306078.2:ENST00000394973.4	protein_coding	protein_coding	protein_coding	protein_coding	0	182	2	6.26544	6.801	7.33656	3.07185e-4	2.06156e-4	0.00996904	0.00461335
chr5	64721512	64721611	2683115	0	-	0.323232	(0.29,0.33]	chr5	264850	35	UTR3	UTR3:EXON_MRNA	SREK1IP1	ENSG00000153006.16	ENST00000513458.9	protein_coding	protein_coding	protein_coding	protein_coding	0	172	2	6.6152	6.80095	6.9867	0.00297819	5.85045e-5	0.0347831	0.00183587
chr16	89306640	89306740	6659878	0	-	0.67	(0.58,1]	chr16	666665	9	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1:ENST00000647539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	166	2	6.57947	6.80056	7.02165	0.00165065	1.76307e-5	0.0250898	7.68293e-4
chr7	100302222	100302322	3654105	0	-	0.56	(0.523,0.58]	chr7	352085	11	INTRON	INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	178	2	6.49924	6.800515000000001	7.10179	0.00133774	2.16101e-4	0.0223452	0.00477041
chr1	31414420	31414509	80068	0	+	0.539326	(0.523,0.58]	chr1	9151	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SERINC2	ENSG00000168528.12	ENST00000373710.5:ENST00000536859.5:ENST00000487207.5:ENST00000373709.8:ENST00000536384.2:ENST00000491976.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	1202	2	6.73481	6.800195	6.86558	7.2723e-5	1.31216e-5	0.00216169	0.00210389
chr16	81525886	81525986	6508552	0	+	0.33	(0.29,0.33]	chr16	645911	300	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	175	2	6.59599	6.8	7.00401	0.00139153	1.86005e-4	0.022808	0.00430463
chr16	29271413	29271513	6433551	0	+	0.45	(0.419,0.45]	chr16	636745	193	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	187	2	6.38214	6.79934	7.21654	0.00208302	6.07209e-4	0.0287557	0.0100293
chr1	157013238	157013337	603878	0	-	0.50505	(0.485,0.523]	chr1	71589	267	INTRON	INTRON	ARHGEF11	ENSG00000132694.19	ENST00000368194.8:ENST00000361409.2	protein_coding	protein_coding	protein_coding	protein_coding	0	172	2	6.59033	6.798965	7.0076	0.00353829	5.00839e-5	0.0381878	0.00164756
chr1	247308374	247308474	709370	0	-	0.49	(0.485,0.523]	chr1	82908	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF496	ENSG00000162714.13	ENST00000294753.8:ENST00000462139.1:ENST00000682384.1:ENST00000461277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	172	2	6.59033	6.798965	7.0076	0.00353829	5.00839e-5	0.0381878	0.00164756
chr5	1055381	1055481	2608374	0	-	0.61	(0.58,1]	chr5	259538	15	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10:ENST00000634447.1	protein_coding	protein_coding	protein_coding	protein_coding	0	166	2	6.76083	6.79884	6.83685	9.44859e-4	4.22142e-5	0.0183873	0.0014546
chr3	177198865	177198964	1961429	0	-	0.464646	(0.45,0.485]	chr3	199358	15	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000635794.1:ENST00000637544.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	189	2	6.26988	6.7984	7.32692	0.00103756	5.20615e-4	0.019365	0.00899129
chr7	139665387	139665487	3722799	0	-	0.3	(0.29,0.33]	chr7	357498	333	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	177	2	6.34078	6.79819	7.2556	0.00499711	2.57013e-5	0.0463896	0.00100922
chr11	70535430	70535530	5059627	0	-	0.52	(0.485,0.523]	chr11	492663	321	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	376	2	5.5764	6.79747	8.01854	2.05799e-4	2.26267e-5	0.00809983	9.21005e-4
chr16	8640830	8640930	6381028	0	+	0.55	(0.523,0.58]	chr16	631104	3	SS3_PROX	SS3_PROX:INTRON	METTL22	ENSG00000067365.15	ENST00000163678.11:ENST00000381920.8:ENST00000561758.5:ENST00000568967.5:ENST00000572956.5:ENST00000561993.5:ENST00000563501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	175	2	6.58447	6.797345	7.01022	0.0016001	1.68436e-4	0.0246878	0.00400681
chr4	3361701	3361801	2005053	0	+	0.56	(0.523,0.58]	chr4	204663	183	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	171	2	6.69445	6.796844999999999	6.89924	0.00293287	6.56505e-5	0.0343709	0.00199995
chr7	134291885	134291983	3715883	0	-	0.387755	(0.36,0.39]	chr7	356904	27	UTR3	UTR3:EXON_MRNA	SLC35B4	ENSG00000205060.11	ENST00000378509.9	protein_coding	protein_coding	protein_coding	protein_coding	0	176	2	6.53282	6.79637	7.05992	0.00573632	8.20206e-5	0.0499133	0.00236018
chr9	133802293	133802392	4428414	0	-	0.525253	(0.523,0.58]	chr9	423268	41	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	1	377	2	5.51495	6.796135	8.07732	1.84226e-4	2.62578e-5	0.00765659	0.00102025
chr20	21321297	21321397	7449164	0	+	0.49	(0.485,0.523]	chr20	775020	175	INTRON	INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	1	372	2	5.72776	6.795215	7.86267	2.84548e-4	1.39296e-5	0.00957277	6.47499e-4
chr16	22424512	22424612	6566809	0	-	0.61	(0.58,1]	chr16	655121	19	INTRON	INTRON	CDR2:RRN3P3	ENSG00000140743.8:ENSG00000257122.5	ENST00000564542.5:ENST00000563573.5:ENST00000569045.1:ENST00000551766.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	0	170	2	6.33437	6.795204999999999	7.25604	0.00276493	7.89156e-6	0.0332418	4.34116e-4
chr1	27489185	27489285	431243	0	-	0.54	(0.523,0.58]	chr1	50973	599	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	2	629	2	5.20632	6.79517	8.38402	3.52175e-4	5.4563e-7	0.0107244	7.01656e-5
chr12	132742653	132742753	5539927	0	-	0.45	(0.419,0.45]	chr12	546703	1	SS5_PROX	SS5_PROX:INTRON	ANKLE2	ENSG00000176915.15	ENST00000357997.10:ENST00000539605.5:ENST00000538591.5:ENST00000535036.5:ENST00000545623.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	487	2	5.08808	6.7950349999999995	8.50199	0.00183771	1.36503e-6	0.0267343	1.28648e-4
chr1	149060876	149060967	583623	0	-	0.450549	(0.45,0.485]	chr1	67306	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF9	ENSG00000269713.8	ENST00000615421.4:ENST00000584027.9:ENST00000613595.4:ENST00000621074.5:ENST00000621645.4:ENST00000610300.4:ENST00000483630.6:ENST00000611593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	176	2	6.58806	6.794955	7.00185	0.00193567	2.14087e-4	0.0275437	0.00475596
chr16	85232765	85232865	6515396	0	+	0.51	(0.485,0.523]	chr16	646377	50	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	176	2	6.53888	6.794745	7.05061	0.00146547	2.02788e-4	0.023492	0.0045746
chr4	106130578	106130678	2301558	0	-	0.4	(0.39,0.419]	chr4	231440	138	INTRON	INTRON	TBCK	ENSG00000145348.17	ENST00000273980.10:ENST00000394708.7:ENST00000510927.5:ENST00000361687.8:ENST00000394706.7:ENST00000467183.6:ENST00000514689.5:ENST00000515705.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	175	2	6.60375	6.794449999999999	6.98515	0.00520388	1.02541e-4	0.0475031	0.00278573
chr7	100634254	100634353	3654949	0	-	0.606061	(0.58,1]	chr7	352299	3	INTRON	INTRON	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	191	2	6.0945	6.79441	7.49432	3.47472e-4	2.13416e-4	0.00826482	0.00673552
chr2	240520833	240520933	1394643	0	-	0.56	(0.523,0.58]	chr2	149019	3	SS3_PROX	SS3_PROX:INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000405523.7	protein_coding	protein_coding	protein_coding	protein_coding	0	174	2	6.41733	6.794325	7.17132	0.00490887	2.83567e-5	0.0457614	0.00107991
chr11	70631329	70631429	5060586	0	-	0.61	(0.58,1]	chr11	492663	1280	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	418	2	5.70594	6.794135	7.88233	1.36979e-4	8.55795e-7	0.00649687	9.48667e-5
chr6	45043129	45043229	3140361	0	-	0.37	(0.36,0.39]	chr6	306695	221	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000674231.1:ENST00000371460.5:ENST00000637763.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	175	2	6.75506	6.7940000000000005	6.83294	0.00338675	1.93748e-4	0.0372054	0.00442349
chr5	1328500	1328599	2609100	0	-	0.484848	(0.45,0.485]	chr5	259719	22	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	386	2	6.05013	6.793665000000001	7.5372	6.87469e-4	6.05316e-6	0.0154413	3.5986e-4
chr7	1938989	1939089	3529614	0	-	0.66	(0.58,1]	chr7	340962	17	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000450235.5:ENST00000437877.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	168	2	6.39965	6.79322	7.18679	0.00241374	1.00244e-5	0.0309229	5.13591e-4
chr18	48658457	48658557	7057852	0	+	0.35	(0.33,0.36]	chr18	720311	214	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1:ENST00000589585.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	180	2	6.30116	6.793205	7.28525	0.00721369	3.48504e-5	0.0564903	0.00126033
chr8	127175162	127175261	4066739	0	-	0.363636	(0.36,0.39]	chr8	387403	4	INTRON	INTRON	CASC19	ENSG00000254166.3	ENST00000642100.1:ENST00000641912.1:ENST00000641421.1:ENST00000641701.1:ENST00000641991.1:ENST00000641588.1:ENST00000642088.1:ENST00000641425.1:ENST00000641706.1:ENST00000641496.1:ENST00000641013.1:ENST00000641262.1:ENST00000641174.1:ENST00000642102.1:ENST00000641615.1:ENST00000641487.1:ENST00000641321.1:ENST00000641719.1:ENST00000642010.1:ENST00000641578.1:ENST00000641510.1:ENST00000641604.1:ENST00000641056.1:ENST00000641642.1:ENST00000641362.1:ENST00000641365.1:ENST00000642077.1:ENST00000641179.1:ENST00000642126.1:ENST00000641411.1:ENST00000641357.1:ENST00000641746.2:ENST00000641073.1:ENST00000641298.1:ENST00000641001.1:ENST00000641674.2:ENST00000641828.1:ENST00000641029.1:ENST00000641547.1:ENST00000642134.1:ENST00000641696.1:ENST00000641480.1:ENST00000641187.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	532	2	5.55562	6.793150000000001	8.03068	3.60399e-4	9.74666e-6	0.0108631	5.04053e-4
chr10	18566761	18566860	4642396	0	-	0.40404	(0.39,0.419]	chr10	443321	144	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	175	2	6.75448	6.79302	6.83156	0.00348989	1.95875e-4	0.0379065	0.00445752
chr16	81627390	81627490	6509571	0	+	0.64	(0.58,1]	chr16	645926	53	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	168	2	6.59969	6.79285	6.98601	6.79156e-4	7.15008e-5	0.0153241	0.00213784
chr3	17497079	17497179	1702336	0	-	0.45	(0.419,0.45]	chr3	177733	682	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	483	2	5.21592	6.792515	8.36911	0.00145299	2.04898e-6	0.0234106	1.69433e-4
chr16	75096050	75096150	6492886	0	+	0.46	(0.45,0.485]	chr16	645364	3	SS5_PROX	SS5_PROX:INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1:ENST00000579084.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	172	2	6.6861	6.792445	6.89879	0.00348661	8.68871e-5	0.0379065	0.00246367
chr18	50093146	50093245	7165567	0	-	0.474747	(0.45,0.485]	chr18	728370	374	INTRON	INTRON	MYO5B	ENSG00000167306.20	ENST00000285039.12:ENST00000586036.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	173	2	6.54495	6.792315	7.03968	0.00450754	5.71642e-5	0.0436138	0.00180869
chr7	6701504	6701602	3542728	0	-	0.459184	(0.45,0.485]	chr7	342318	7	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	0	173	2	6.54495	6.792315	7.03968	0.00450754	5.71642e-5	0.0436138	0.00180869
chrX	69910358	69910458	7899257	0	+	0.47	(0.45,0.485]	chrX	827396	488	INTRON	INTRON	EDA	ENSG00000158813.18	ENST00000374553.6:ENST00000374548.5:ENST00000502251.5:ENST00000533317.5:ENST00000374552.9:ENST00000524573.5:ENST00000503592.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	173	2	6.54495	6.792315	7.03968	0.00450754	5.71642e-5	0.0436138	0.00180869
chr17	38892902	38893002	6729803	0	+	0.57	(0.523,0.58]	chr17	676446	20	INTRON	INTRON	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000585841.5:ENST00000318008.11:ENST00000443937.7:ENST00000584106.1:ENST00000435347.7:ENST00000419929.1:ENST00000581485.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	182	2	6.36114	6.792205	7.22327	0.00105256	3.21725e-4	0.0194688	0.0063695
chr17	80021703	80021803	6982133	0	-	0.52	(0.485,0.523]	chr17	713081	77	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7	protein_coding	protein_coding	protein_coding	protein_coding	0	173	2	6.45793	6.79185	7.12577	0.00452302	3.48268e-5	0.0436138	0.00126017
chr17	32552332	32552432	6884060	0	-	0.51	(0.485,0.523]	chr17	698835	554	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000577352.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	172	2	6.69995	6.791815	6.88368	0.00202693	1.26446e-4	0.0283135	0.00325863
chr22	46290492	46290585	7743255	0	+	0.602151	(0.58,1]	chr22	811892	2	INTRON	INTRON	TTC38	ENSG00000075234.17	ENST00000381031.8:ENST00000451998.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	179	2	6.29206	6.79173	7.2914	3.40674e-4	1.89825e-4	0.010549	0.0043642
chrX	9568940	9569040	7843489	0	+	0.54	(0.523,0.58]	chrX	822423	80	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	448	2	5.3293	6.791385	8.25347	6.95266e-4	8.45494e-7	0.0155811	9.40599e-5
chr10	50511230	50511330	4689561	0	-	0.39	(0.36,0.39]	chr10	447073	439	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5:ENST00000608287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	175	2	6.55124	6.79097	7.0307	0.0055566	8.91641e-5	0.049265	0.00250881
chr10	18573456	18573556	4642463	0	-	0.44	(0.419,0.45]	chr10	443321	211	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	176	2	6.728	6.790735	6.85347	0.00394037	2.41873e-4	0.0406053	0.00518926
chr17	77215188	77215285	6803126	0	+	0.350515	(0.33,0.36]	chr17	686684	13	UTR3	UTR3:EXON_MRNA:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	3	1369	2	6.64009	6.7896	6.93911	3.0815e-5	2.50871e-7	0.00310406	4.20487e-5
chr17	77484128	77484227	6805223	0	+	0.515152	(0.485,0.523]	chr17	686821	1	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	172	2	6.68077	6.78956	6.89835	0.00197036	1.33825e-4	0.0278418	0.00338739
chr6	166955084	166955182	3302044	0	-	0.428571	(0.419,0.45]	chr6	319750	27	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000358165.7:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	745	2	6.69583	6.789045	6.88226	1.58518e-4	8.67866e-5	0.00518123	0.00384084
chr16	79189361	79189461	6506314	0	+	0.56	(0.523,0.58]	chr16	645723	1488	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	172	2	6.66495	6.7887	6.91245	0.00193417	1.32802e-4	0.0275437	0.00337193
chr16	29271113	29271213	6433548	0	+	0.41	(0.39,0.419]	chr16	636745	190	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	1	494	2	5.70059	6.78854	7.87649	4.99263e-4	7.44304e-6	0.0129939	4.17372e-4
chr16	57376971	57377068	6466034	0	+	0.57732000000000006	(0.523,0.58]	chr16	641366	1	UTR5	UTR5:EXON_MRNA:INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1:ENST00000565912.1	protein_coding	protein_coding	protein_coding	protein_coding	0	170	2	6.71116	6.78837	6.86558	0.00284169	7.2723e-5	0.033773	0.00216169
chr6	17469354	17469453	2860440	0	+	0.474747	(0.45,0.485]	chr6	279355	59	INTRON	INTRON	CAP2	ENSG00000112186.13	ENST00000229922.7:ENST00000489374.5:ENST00000378990.6:ENST00000493172.5:ENST00000465994.5:ENST00000479291.5:ENST00000476263.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	175	2	6.58806	6.788169999999999	6.98828	0.00198597	2.14087e-4	0.0279914	0.00475596
chr5	1498484	1498583	2609724	0	-	0.373737	(0.36,0.39]	chr5	259859	32	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000514484.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	447	2	4.93861	6.788155	8.6377	2.41059e-4	1.09348e-4	0.00583571	0.00518041
chr19	16380519	16380617	7343736	0	-	0.561224	(0.523,0.58]	chr19	760674	29	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	170	2	6.72769	6.788069999999999	6.84845	0.00275419	7.65992e-5	0.0332418	0.00224403
chr13	112553157	112553257	5752451	0	-	0.62	(0.58,1]	chr13	563939	46	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000464139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	164	2	6.63475	6.787295	6.93984	0.00146621	2.32442e-5	0.023492	9.36605e-4
chr6	1738178	1738278	3080253	0	-	0.38	(0.36,0.39]	chr6	299476	113	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	175	2	6.51417	6.787045	7.05992	0.00592387	8.20206e-5	0.0506158	0.00236018
chr19	16380321	16380420	7343734	0	-	0.494949	(0.485,0.523]	chr19	760674	27	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	170	2	6.69488	6.786885	6.87889	0.00290687	7.40532e-5	0.0342042	0.00219184
chr6	507093	507192	3077211	0	-	0.535354	(0.523,0.58]	chr6	299297	70	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	0	170	2	6.76017	6.78687	6.81357	0.00258949	8.51182e-5	0.0321874	0.00242869
chr1	43980910	43981008	110965	0	+	0.5	(0.485,0.523]	chr1	13806	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	B4GALT2	ENSG00000117411.18	ENST00000498543.1:ENST00000434555.7:ENST00000372324.6:ENST00000481924.2:ENST00000497866.6:ENST00000485678.6:ENST00000356836.10:ENST00000309519.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	171	2	6.53507	6.7865649999999995	7.03806	0.00392199	4.56236e-5	0.0404814	0.00154047
chr9	137780217	137780315	4266111	0	+	0.540816	(0.523,0.58]	chr9	407438	1	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	368	2	5.77841	6.785845	7.79328	3.32134e-4	1.12313e-5	0.0103819	5.58392e-4
chr14	89255411	89255510	6026652	0	-	0.40404	(0.39,0.419]	chr14	591432	242	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	389	2	5.63638	6.785375	7.93437	4.51015e-4	3.17579e-5	0.0121988	0.0011739
chr1	45595073	45595173	115643	0	+	0.51	(0.485,0.523]	chr1	14471	3	SS5_PROX	SS5_PROX:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000530840.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	371	2	5.62006	6.784915	7.94977	2.37499e-4	1.96821e-5	0.0086821	8.29491e-4
chr11	87274753	87274853	4912757	0	+	0.4	(0.39,0.419]	chr11	474136	377	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding	0	190	2	6.24563	6.78487	7.32411	0.00142783	7.69256e-4	0.0231443	0.0118331
chr21	43692689	43692789	7623747	0	+	0.48	(0.45,0.485]	chr21	796679	1	SS3_PROX	SS3_PROX:INTRON	RRP1B	ENSG00000160208.13	ENST00000340648.6:ENST00000470886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	174	2	6.42921	6.78484	7.14047	0.00554658	4.22229e-5	0.0492398	0.0014546
chr16	85433717	85433817	6517408	0	+	0.47	(0.45,0.485]	chr16	646391	744	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	179	2	6.43773	6.7843350000000004	7.13094	0.00151409	3.27319e-4	0.0240218	0.00645438
chr20	8814536	8814636	7433463	0	+	0.4	(0.39,0.419]	chr20	773913	120	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000378641.7:ENST00000338037.11:ENST00000617005.4:ENST00000612075.4:ENST00000487210.5:ENST00000635929.1:ENST00000637935.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	183	2	6.39063	6.7842400000000005	7.17785	0.00186901	5.25726e-4	0.0270134	0.00903907
chr16	85231065	85231165	6515379	0	+	0.49	(0.485,0.523]	chr16	646377	33	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	182	2	6.33317	6.784235	7.2353	0.00101791	3.65589e-4	0.0191524	0.00700609
chr22	38210630	38210729	7724398	0	+	0.464646	(0.45,0.485]	chr22	809114	67	INTRON	INTRON	MAFF	ENSG00000185022.12	ENST00000538999.1:ENST00000538320.5:ENST00000338483.7:ENST00000441709.1:ENST00000417948.5:ENST00000426621.6	protein_coding	protein_coding	protein_coding	protein_coding	0	176	2	6.52554	6.783670000000001	7.0418	0.00179449	2.5568e-4	0.0262815	0.00541562
chr5	616706	616805	2378437	0	+	0.646465	(0.58,1]	chr5	237586	39	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6	protein_coding	protein_coding	protein_coding	protein_coding	0	169	2	6.51182	6.783505	7.05519	5.81818e-4	9.48877e-5	0.0141176	0.00262417
chr1	48226871	48226969	120968	0	+	0.581633	(0.58,1]	chr1	15165	17	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	408	2	5.21098	6.783465	8.35595	4.39e-4	1.50849e-7	0.012033	3.00675e-5
chr2	239281577	239281677	1391524	0	-	0.46	(0.45,0.485]	chr2	148740	300	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	394	2	6.19733	6.78337	7.36941	9.55229e-4	3.76989e-6	0.0184882	2.60443e-4
chr22	25487425	25487525	7701418	0	+	0.55	(0.523,0.58]	chr22	805972	259	INTRON	INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000686640.1:ENST00000509460.3:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	197	2	6.06747	6.78285	7.49823	7.30845e-4	6.06692e-4	0.0144497	0.0113963
chr17	17742350	17742450	6689459	0	+	0.45	(0.419,0.45]	chr17	671344	178	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	186	2	6.16812	6.7822700000000005	7.39642	0.0123115	3.70422e-5	0.0756356	0.00131524
chr7	121388191	121388290	3694959	0	-	0.424242	(0.419,0.45]	chr7	355171	48	INTRON	INTRON	FAM3C	ENSG00000196937.11	ENST00000359943.8:ENST00000412653.5:ENST00000426156.1	protein_coding	protein_coding	protein_coding	protein_coding	0	175	2	6.54199	6.7818000000000005	7.02161	0.00668959	1.07601e-4	0.0541558	0.00289045
chr20	33642098	33642195	7459085	0	+	0.43299	(0.419,0.45]	chr20	776536	12	INTRON	INTRON	CBFA2T2	ENSG00000078699.22	ENST00000342704.11:ENST00000375279.6:ENST00000346541.7:ENST00000397800.5:ENST00000492345.5:ENST00000359606.3:ENST00000543126.1	protein_coding	protein_coding	protein_coding	protein_coding	0	186	2	6.33542	6.78169	7.22796	0.00204103	6.85495e-4	0.0283511	0.0108846
chr1	246232823	246232923	703113	0	-	0.46	(0.45,0.485]	chr1	82422	392	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	175	2	6.36767	6.78136	7.19505	0.00618594	3.57931e-5	0.0519442	0.00128261
chr12	132528786	132528886	5352903	0	+	0.64	(0.58,1]	chr12	523670	4	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	168	2	6.5343	6.781105	7.02791	6.18479e-4	8.82891e-5	0.0145945	0.00248664
chr22	36026539	36026639	7805807	0	-	0.47	(0.45,0.485]	chr22	817798	650	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1	protein_coding	protein_coding	protein_coding	protein_coding	0	173	2	6.62829	6.780495	6.9327	0.00220534	1.90839e-4	0.0295736	0.0043642
chr22	38210530	38210630	7724397	0	+	0.49	(0.485,0.523]	chr22	809114	66	INTRON	INTRON	MAFF	ENSG00000185022.12	ENST00000538999.1:ENST00000538320.5:ENST00000338483.7:ENST00000441709.1:ENST00000417948.5:ENST00000426621.6	protein_coding	protein_coding	protein_coding	protein_coding	0	185	2	6.25753	6.780279999999999	7.30303	8.89361e-4	4.52177e-4	0.0177608	0.00816702
chr7	47478304	47478404	3588591	0	-	0.54	(0.523,0.58]	chr7	346123	252	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	172	2	6.60501	6.780085	6.95516	0.00178078	1.58554e-4	0.0262315	0.00384084
chr19	950000	950099	7185346	0	+	0.59596	(0.58,1]	chr19	730741	169	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	453	2	5.45058	6.780045	8.10951	4.98328e-5	3.10162e-6	0.00389327	2.2511e-4
chr18	21579844	21579943	7128487	0	-	0.333333	(0.33,0.36]	chr18	725442	37	INTRON	INTRON	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	176	2	6.5336	6.77999	7.02638	0.00193661	3.03099e-4	0.0275527	0.00611977
chr18	76423860	76423960	7179358	0	-	0.54	(0.523,0.58]	chr18	730080	432	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	169	2	6.71116	6.779805	6.84845	0.00284169	7.65992e-5	0.033773	0.00224403
chr1	147244086	147244186	232455	0	+	0.42	(0.419,0.45]	chr1	25788	5	INTRON	INTRON	CHD1L	ENSG00000131778.20	ENST00000652587.1:ENST00000652616.1:ENST00000652494.1:ENST00000651207.1:ENST00000650721.1:ENST00000651226.1:ENST00000652161.1:ENST00000651510.1:ENST00000361293.10:ENST00000652278.1:ENST00000369259.4:ENST00000467213.5:ENST00000369258.8:ENST00000622533.4:ENST00000651410.1:ENST00000652486.1:ENST00000652346.1:ENST00000651407.1:ENST00000650828.1:ENST00000651070.1:ENST00000650714.1:ENST00000651420.1:ENST00000652357.1:ENST00000488864.5:ENST00000652188.1:ENST00000651820.1:ENST00000651231.1:ENST00000492728.1:ENST00000651206.1:ENST00000431239.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	175	2	6.69136	6.77975	6.86814	0.00384173	2.67131e-4	0.0399957	0.00557451
chr8	630037	630137	3932020	0	-	0.6	(0.58,1]	chr8	376005	24	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	163	2	6.67046	6.779445	6.88843	0.00135763	2.76213e-5	0.0224546	0.00106056
chr2	187468232	187468332	1342662	0	-	0.32	(0.29,0.33]	chr2	142445	3	SS3_PROX	SS3_PROX:INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5:ENST00000481132.5:ENST00000435414.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	178	2	6.39964	6.779305	7.15897	0.00101941	3.26144e-4	0.0191632	0.00644787
chr10	31805691	31805790	4660580	0	-	0.313131	(0.29,0.33]	chr10	444873	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8:ENST00000492028.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	172	2	6.59599	6.779254999999999	6.96252	0.00151134	1.86005e-4	0.0240218	0.00430463
chr4	37604759	37604858	2213185	0	-	0.494949	(0.485,0.523]	chr4	223561	132	INTRON	INTRON	RELL1	ENSG00000181826.10	ENST00000314117.8	protein_coding	protein_coding	protein_coding	protein_coding	0	180	2	6.35753	6.7788699999999995	7.20021	0.00109136	3.41236e-4	0.0198839	0.00667174
chr6	169651629	169651729	3304380	0	-	0.62	(0.58,1]	chr6	319870	3	SS5_PROX	SS5_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	163	2	6.63475	6.778825	6.9229	0.00146621	2.46059e-5	0.023492	9.771e-4
chr17	57507245	57507345	6762286	0	+	0.5	(0.485,0.523]	chr17	682142	196	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1:ENST00000674898.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	170	2	6.71888	6.778815	6.83875	0.00220993	1.19549e-4	0.0295736	0.00313373
chr1	99720842	99720941	550218	0	-	0.373737	(0.36,0.39]	chr1	63129	8	INTRON	INTRON	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9	protein_coding	protein_coding	protein_coding	protein_coding	0	190	2	6.22055	6.778345	7.33614	0.00135217	8.14665e-4	0.0224546	0.0123172
chr13	113049822	113049921	5656133	0	+	0.40404	(0.39,0.419]	chr13	555180	26	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	182	2	6.39063	6.778295	7.16596	0.00191011	5.25726e-4	0.0273722	0.00903907
chr9	108900875	108900924	4362800	0	-	0.510204	(0.485,0.523]	chr9	416549	1	INTRON	INTRON	ELP1	ENSG00000070061.16	ENST00000675765.1:ENST00000374647.10:ENST00000675078.1:ENST00000674948.1:ENST00000676121.1:ENST00000676429.1:ENST00000674704.1:ENST00000674938.1:ENST00000675602.1:ENST00000675215.1:ENST00000676044.1:ENST00000675979.1:ENST00000675325.1:ENST00000495759.6:ENST00000675893.1:ENST00000675943.1:ENST00000675535.1:ENST00000674890.1:ENST00000675233.1:ENST00000676086.1:ENST00000674836.1:ENST00000675406.1:ENST00000675748.1:ENST00000675400.1:ENST00000676237.1:ENST00000675825.1:ENST00000676424.1:ENST00000675647.1:ENST00000675877.1:ENST00000676416.1:ENST00000675052.1:ENST00000674535.1:ENST00000537196.1:ENST00000675566.1:ENST00000675507.1:ENST00000675727.1:ENST00000675711.1:ENST00000675458.1:ENST00000675335.1:ENST00000675321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	169	2	6.62603	6.77727	6.92851	0.00330946	6.37267e-5	0.0368376	0.00195661
chr5	60677281	60677381	2680197	0	-	0.42	(0.419,0.45]	chr5	264502	293	INTRON	INTRON	DEPDC1B	ENSG00000035499.13	ENST00000265036.10:ENST00000453022.6:ENST00000512078.5:ENST00000512452.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	174	2	6.74598	6.77726	6.80854	0.00425752	2.30334e-4	0.0422596	0.00498593
chr7	76998914	76999013	3398789	0	+	0.585859	(0.58,1]	chr7	328286	82	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	173	2	6.3691	6.776705	7.18431	4.34792e-4	1.49225e-4	0.0119405	0.00367368
chr9	129498464	129498564	4250761	0	+	0.61	(0.58,1]	chr9	404724	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	163	2	6.57947	6.776294999999999	6.97312	0.00165065	2.07776e-5	0.0250898	8.62032e-4
chr10	18565561	18565661	4642384	0	-	0.39	(0.36,0.39]	chr10	443321	132	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	173	2	6.71887	6.775905	6.83294	0.00338675	2.14172e-4	0.0372054	0.00475596
chr21	43920315	43920414	7624983	0	+	0.50505	(0.485,0.523]	chr21	796899	35	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5	protein_coding	protein_coding	protein_coding	protein_coding	1	372	2	5.99646	6.775885000000001	7.55531	5.34747e-4	5.81992e-6	0.0134768	3.51962e-4
chr10	100932662	100932760	4569477	0	+	0.489796	(0.485,0.523]	chr10	436158	12	INTRON	INTRON	SLF2	ENSG00000119906.13	ENST00000238961.9:ENST00000649226.1:ENST00000370269.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	170	2	6.68077	6.774815	6.86886	0.00208565	1.33825e-4	0.0287557	0.00338739
chr12	6607665	6607749	5363064	0	-	0.535714	(0.523,0.58]	chr12	525396	2	SS3_PROX	SS3_PROX:INTRON	CHD4	ENSG00000111642.16	ENST00000643335.1:ENST00000646787.1:ENST00000647426.1:ENST00000645265.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	174	2	6.49924	6.774710000000001	7.05018	0.00148008	2.16101e-4	0.023604	0.00477041
chr19	16458615	16458715	7344552	0	-	0.56	(0.523,0.58]	chr19	760800	160	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5:ENST00000597937.5:ENST00000593760.5:ENST00000596037.5:ENST00000597559.5:ENST00000602151.1:ENST00000595845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	462	2	5.71583	6.774665000000001	7.8335	3.11951e-4	3.3976e-6	0.0100453	2.40562e-4
chr8	639684	639783	3932117	0	-	0.555556	(0.523,0.58]	chr8	376009	17	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1:ENST00000523709.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	170	2	6.47717	6.7743400000000005	7.07151	0.00439843	3.86786e-5	0.0429852	0.00135841
chr20	62958176	62958272	7508278	0	+	0.53125	(0.523,0.58]	chr20	783180	2	INTRON	INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	492	2	5.15829	6.773705	8.38912	9.561e-5	1.84796e-5	0.00546375	7.97426e-4
chr18	77119323	77119423	7181514	0	-	0.61	(0.58,1]	chr18	730186	137	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1:ENST00000583798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	185	2	6.12444	6.77364	7.42284	3.17437e-4	2.51834e-4	0.0089838	0.00632787
chr18	79357458	79357558	7099860	0	+	0.66	(0.58,1]	chr18	722963	89	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000426216.6:ENST00000307671.12:ENST00000490210.6:ENST00000590477.5:ENST00000589951.5:ENST00000588921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	460	2	5.11729	6.77319	8.42909	2.30008e-5	1.02443e-5	0.00276344	5.22785e-4
chr19	54212045	54212145	7291714	0	+	0.42	(0.419,0.45]	chr19	750607	45	INTRON	INTRON	RPS9	ENSG00000170889.14	ENST00000448962.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	173	2	6.6307	6.7725550000000005	6.91441	0.00576404	1.45031e-4	0.0500197	0.00359413
chr6	56470782	56470856	3152305	0	-	0.378378	(0.36,0.39]	chr6	307485	1	SS5_PROX	SS5_PROX:INTRON	DST	ENSG00000151914.22	ENST00000244364.10:ENST00000312431.10:ENST00000421834.6:ENST00000680361.1:ENST00000370788.6:ENST00000520645.6:ENST00000651941.1:ENST00000651790.1:ENST00000651289.1:ENST00000651457.1:ENST00000340834.10:ENST00000361203.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	180	2	6.41401	6.7725349999999995	7.13106	0.0019751	4.90006e-4	0.0278911	0.00861813
chr3	47955409	47955509	1764612	0	-	0.37	(0.36,0.39]	chr3	181976	267	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000633710.1	protein_coding	protein_coding	protein_coding	protein_coding	0	172	2	6.77143	6.772119999999999	6.77281	0.00377816	1.84422e-4	0.0396337	0.00427863
chr2	239282476	239282576	1391533	0	-	0.42	(0.419,0.45]	chr2	148740	309	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	545	2	5.67463	6.771945	7.86926	6.33602e-4	7.93039e-6	0.0147865	4.36109e-4
chr10	28559134	28559234	4469676	0	+	0.41	(0.39,0.419]	chr10	427649	207	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	467	2	5.26715	6.771345	8.27554	0.00114934	2.19287e-6	0.020525	1.774e-4
chr1	1108562	1108661	380268	0	-	0.626263	(0.58,1]	chr1	42816	13	INTRON	INTRON	C1orf159	ENSG00000131591.18	ENST00000379339.5:ENST00000379325.7:ENST00000421241.7:ENST00000467751.5:ENST00000477196.5:ENST00000434641.5:ENST00000482816.5:ENST00000462097.5:ENST00000475119.5:ENST00000472741.5:ENST00000480643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	172	2	6.16945	6.77116	7.37287	0.00387582	5.25408e-6	0.0401256	3.26574e-4
chr7	158916774	158916871	3523157	0	+	0.463918	(0.45,0.485]	chr7	340293	21	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	171	2	6.66742	6.7711500000000004	6.87488	0.00245783	1.70557e-4	0.0312836	0.00403679
chr18	36893404	36893504	7050102	0	+	0.5	(0.485,0.523]	chr18	719851	71	INTRON	INTRON	KIAA1328	ENSG00000150477.15	ENST00000592611.5:ENST00000280020.10:ENST00000590617.5:ENST00000587139.5:ENST00000591619.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	173	2	6.51742	6.770755	7.02409	0.00154346	2.15808e-4	0.02427	0.00477041
chr7	1939188	1939288	3529616	0	-	0.72	(0.58,1]	chr7	340962	19	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000450235.5:ENST00000437877.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	170	2	6.21852	6.770315	7.32211	0.00350812	6.27279e-6	0.0379357	3.69646e-4
chr16	85522879	85522979	6518300	0	+	0.42	(0.419,0.45]	chr16	646391	1636	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	175	2	6.61516	6.770265	6.92537	0.00347877	3.27987e-4	0.0378956	0.00646148
chr15	84566825	84566924	6343595	0	-	0.434343	(0.419,0.45]	chr15	625369	30	INTRON	INTRON	UBE2Q2P1	ENSG00000189136.9	ENST00000354771.8:ENST00000339094.5:ENST00000561403.6:ENST00000558251.5:ENST00000559871.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	182	2	6.38214	6.7700949999999995	7.15805	0.0023114	6.07209e-4	0.0302623	0.0100293
chr17	82184032	82184132	6988228	0	-	0.51	(0.485,0.523]	chr17	714633	1	SS3_PROX	SS3_PROX:INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000327026.7:ENST00000392343.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	170	2	6.64163	6.76999	6.89835	0.00197036	1.50187e-4	0.0278418	0.0036849
chr8	143607314	143607396	4097295	0	-	0.621951	(0.58,1]	chr8	389389	2	SS3_PROX	SS3_PROX:INTRON	PYCR3	ENSG00000104524.14	ENST00000495276.6:ENST00000220966.10:ENST00000447926.6:ENST00000433751.5:ENST00000377579.7:ENST00000462036.5:ENST00000482616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	163	2	6.5023	6.769880000000001	7.03746	0.00194503	1.67087e-5	0.0275844	7.38685e-4
chr16	57377362	57377460	6466038	0	+	0.561224	(0.523,0.58]	chr16	641366	5	UTR5	UTR5:EXON_MRNA:INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1:ENST00000565912.1	protein_coding	protein_coding	protein_coding	protein_coding	0	169	2	6.68438	6.768915	6.85345	0.00216679	1.2535e-4	0.0292299	0.00324328
chr10	18568160	18568259	4642410	0	-	0.393939	(0.39,0.419]	chr10	443321	158	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	172	2	6.73651	6.768825	6.80114	0.00368319	2.05874e-4	0.0389784	0.00461335
chr16	85374342	85374442	6516814	0	+	0.57	(0.523,0.58]	chr16	646391	150	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	461	2	5.72067	6.768325	7.81598	3.08809e-4	3.59812e-6	0.00998901	2.5106e-4
chr19	53521326	53521420	7290493	0	+	0.56383	(0.523,0.58]	chr19	750312	5	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	ZNF331	ENSG00000130844.19	ENST00000647573.1:ENST00000648236.1:ENST00000513929.6:ENST00000253144.13:ENST00000649326.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	522	2	6.14793	6.768129999999999	7.38833	1.25241e-4	1.43066e-5	0.00620624	6.59187e-4
chr4	5783351	5783451	2009959	0	+	0.47	(0.45,0.485]	chr4	205033	4	SS3_PROX	SS3_PROX:INTRON	EVC	ENSG00000072840.13	ENST00000264956.11	protein_coding	protein_coding	protein_coding	protein_coding	0	173	2	6.36767	6.767845	7.16802	0.00618594	3.88487e-5	0.0519442	0.00136211
chr1	214531531	214531630	659732	0	-	0.484848	(0.45,0.485]	chr1	77702	34	EXON_LNCRNA	EXON_LNCRNA:INTRON	PTPN14	ENSG00000152104.12	ENST00000366956.10:ENST00000543945.5:ENST00000486173.1:ENST00000491277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	179	2	6.36817	6.7678449999999994	7.16752	0.0014116	3.97249e-4	0.0229261	0.00741985
chr2	87475355	87475453	847395	0	+	0.418367	(0.39,0.419]	chr2	95712	21	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000414030.6	lncRNA	lncRNA	lncRNA	lncRNA	0	183	2	6.15206	6.76703	7.382	0.0111378	3.25839e-5	0.0715198	0.00119745
chr12	120997693	120997793	5341114	0	+	0.53	(0.523,0.58]	chr12	521574	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000400024.6:ENST00000560968.5:ENST00000402929.5:ENST00000535955.5:ENST00000538626.2:ENST00000538646.5:ENST00000541924.5:ENST00000544574.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2:ENST00000543255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	367	2	5.9606	6.76694	7.57328	5.21034e-4	6.19018e-6	0.0132625	3.66449e-4
chr9	34231121	34231221	4141251	0	+	0.43	(0.419,0.45]	chr9	393829	98	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2:ENST00000359544.2	protein_coding	protein_coding	protein_coding	protein_coding	1	391	2	5.51865	6.766724999999999	8.0148	4.82909e-4	5.07984e-5	0.0127255	0.00166857
chr21	43727149	43727248	7623865	0	+	0.545455	(0.523,0.58]	chr21	796696	34	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000438837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	168	2	6.55329	6.766695	6.9801	0.00382069	5.12704e-5	0.0398603	0.00167326
chrX	23740653	23740752	7995861	0	-	0.515152	(0.485,0.523]	chrX	836471	43	INTRON	INTRON	ACOT9	ENSG00000123130.17	ENST00000379303.10:ENST00000336430.11:ENST00000379295.5:ENST00000494361.5:ENST00000492081.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	380	2	6.16511	6.766415	7.36772	7.81266e-4	3.34288e-6	0.016579	2.37388e-4
chr14	37656471	37656571	5787538	0	+	0.49	(0.485,0.523]	chr14	567076	331	INTRON	INTRON	TTC6	ENSG00000139865.17	ENST00000553443.6:ENST00000533625.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	168	2	6.57214	6.766405000000001	6.96067	0.0036605	5.77936e-5	0.0389784	0.00182276
chr16	68319731	68319831	6476839	0	+	0.48	(0.45,0.485]	chr16	643277	8	INTRON	INTRON	PRMT7	ENSG00000132600.18	ENST00000686904.1:ENST00000562381.7:ENST00000689486.1:ENST00000693200.1:ENST00000685141.1:ENST00000562050.6:ENST00000565745.6:ENST00000685109.1:ENST00000689637.1:ENST00000692867.1:ENST00000693670.1:ENST00000692760.1:ENST00000687654.1:ENST00000441236.3:ENST00000675132.1:ENST00000688470.1:ENST00000691833.1:ENST00000690432.1:ENST00000691804.1:ENST00000691961.1:ENST00000690932.1:ENST00000692632.1:ENST00000687444.1:ENST00000692283.1:ENST00000569571.5:ENST00000692621.1:ENST00000566341.5:ENST00000686053.1:ENST00000692966.1:ENST00000691663.1:ENST00000564050.6:ENST00000449359.7:ENST00000569047.7:ENST00000693309.1:ENST00000690311.1:ENST00000565356.5:ENST00000564441.6:ENST00000563520.5:ENST00000687558.1:ENST00000339507.9:ENST00000688969.1:ENST00000568975.5:ENST00000563562.5:ENST00000561806.5:ENST00000562456.1:ENST00000566430.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	174	2	6.50408	6.766344999999999	7.02861	0.00184	2.71658e-4	0.0267545	0.00565001
chr16	84757319	84757418	6514405	0	+	0.454545	(0.45,0.485]	chr16	646296	113	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000563892.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	374	2	5.54281	6.76611	7.98941	2.78531e-4	3.00597e-5	0.00949177	0.0011294
chr7	158916090	158916188	3523150	0	+	0.459184	(0.45,0.485]	chr7	340293	14	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	169	2	6.59951	6.76541	6.93131	0.00408353	7.8924e-5	0.0413652	0.0022885
chr7	34665824	34665924	3572283	0	-	0.43	(0.419,0.45]	chr7	344517	221	INTRON	INTRON	NPSR1-AS1	ENSG00000197085.11	ENST00000419766.5:ENST00000539747.5:ENST00000439852.5:ENST00000358772.8:ENST00000431669.5	lncRNA	lncRNA	lncRNA	lncRNA	0	173	2	6.69136	6.765005	6.83865	0.00404244	2.67131e-4	0.0412991	0.00557451
chr16	50341181	50341280	6587924	0	-	0.424242	(0.419,0.45]	chr16	658565	7	INTRON	INTRON	BRD7	ENSG00000166164.16	ENST00000394688.8:ENST00000394689.2:ENST00000475877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	172	2	6.73041	6.764505	6.7986	0.00486702	1.99513e-4	0.0456282	0.00452558
chr9	105362026	105362124	4206778	0	+	0.438776	(0.419,0.45]	chr9	399528	3	INTRON	INTRON	SLC44A1	ENSG00000070214.16	ENST00000374724.1:ENST00000374723.5:ENST00000470972.5:ENST00000374720.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	183	2	6.33542	6.764425	7.19343	0.00217056	6.85495e-4	0.029243	0.0108846
chr19	47230329	47230428	7392385	0	-	0.757576	(0.58,1]	chr19	768106	15	INTRON	INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	1	338	2	5.67439	6.7642	7.85401	9.17266e-5	7.44242e-6	0.00531335	4.17372e-4
chr16	29269514	29269614	6433532	0	+	0.55	(0.523,0.58]	chr16	636745	174	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	186	2	6.18129	6.763669999999999	7.34605	8.24125e-4	5.34061e-4	0.0170688	0.0091384
chr10	18569958	18570058	4642428	0	-	0.36	(0.33,0.36]	chr10	443321	176	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	171	2	6.65433	6.763495	6.87266	0.00258098	2.16624e-4	0.0321738	0.00477756
chr17	43568800	43568900	6739253	0	+	0.39	(0.36,0.39]	chr17	678633	236	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	171	2	6.58738	6.763344999999999	6.93931	0.00521906	1.15604e-4	0.0475638	0.00305897
chr11	68264366	68264463	5057263	0	-	0.494845	(0.485,0.523]	chr11	492361	1	INTRON	INTRON	C11orf24	ENSG00000171067.11	ENST00000304271.11:ENST00000533310.5:ENST00000530166.5:ENST00000527280.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	205	2	5.90769	6.763199999999999	7.61871	0.0011708	4.69943e-4	0.0157899	0.012528
chr14	95233231	95233331	6047978	0	-	0.45	(0.419,0.45]	chr14	593419	27	INTRON	INTRON	CLMN	ENSG00000165959.12	ENST00000298912.9:ENST00000555336.6:ENST00000555615.1:ENST00000553733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	186	2	6.09518	6.76267	7.43016	0.0138177	3.35979e-5	0.0803169	0.00122772
chr17	80634859	80634959	6809803	0	+	0.49	(0.485,0.523]	chr17	687816	87	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	173	2	6.29006	6.76252	7.23498	0.00613935	2.48079e-5	0.0517628	9.81945e-4
chr17	6708750	6708850	6846173	0	-	0.55	(0.523,0.58]	chr17	693344	12	INTRON	INTRON	SLC13A5	ENSG00000141485.17	ENST00000433363.7:ENST00000293800.10:ENST00000381074.8:ENST00000573648.5:ENST00000572094.1:ENST00000572352.5:ENST00000576323.1:ENST00000575230.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	177	2	6.36114	6.76247	7.1638	0.00118398	3.21725e-4	0.020806	0.0063695
chr10	102649211	102649278	4576516	0	+	0.552239	(0.523,0.58]	chr10	437281	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1:ENST00000487927.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	167	2	6.6256	6.7624200000000005	6.89924	0.00333843	6.56505e-5	0.0368376	0.00199995
chr1	93753492	93753587	536016	0	-	0.547368	(0.523,0.58]	chr1	62528	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	BCAR3	ENSG00000137936.18	ENST00000370244.5:ENST00000469315.1:ENST00000433544.1:ENST00000649852.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	178	2	6.33678	6.76233	7.18788	0.00112897	3.44853e-4	0.0202727	0.00672121
chr20	34565754	34565853	7547085	0	-	0.555556	(0.523,0.58]	chr20	787854	44	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	1	439	2	5.2908	6.762309999999999	8.23382	7.52359e-4	9.02928e-7	0.0162125	9.79607e-5
chr16	8711836	8711936	6381508	0	+	0.39	(0.36,0.39]	chr16	631147	284	INTRON	INTRON	ABAT	ENSG00000183044.12	ENST00000564714.5:ENST00000268251.13:ENST00000563992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	469	2	6.64709	6.762245	6.8774	0.00312796	1.40766e-6	0.0356998	1.31121e-4
chr10	132573442	132573542	4617195	0	+	0.49	(0.485,0.523]	chr10	441139	349	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	167	2	6.66087	6.7614149999999995	6.86196	0.00309962	7.79323e-5	0.0355173	0.00227427
chr11	118240677	118240777	5135327	0	-	0.55	(0.523,0.58]	chr11	498661	3	SS3_PROX	SS3_PROX:INTRON	MPZL3	ENSG00000160588.10	ENST00000278949.9:ENST00000525386.5:ENST00000527472.1:ENST00000446386.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	174	2	6.43184	6.760445000000001	7.08905	0.00137158	2.62665e-4	0.0226056	0.00552802
chr17	14325964	14326063	6683039	0	+	0.50505	(0.485,0.523]	chr17	670741	206	INTRON	INTRON	HS3ST3B1	ENSG00000125430.9	ENST00000360954.3:ENST00000466596.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	169	2	6.62166	6.760005	6.89835	0.00197036	1.59261e-4	0.0278418	0.00385073
chr13	113057897	113057997	5656216	0	+	0.55	(0.523,0.58]	chr13	555189	31	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	1	376	2	5.33653	6.75973	8.18293	1.47668e-4	4.62422e-5	0.0067648	0.00155479
chr16	14090823	14090923	6399589	0	+	0.41	(0.39,0.419]	chr16	632159	111	INTRON	INTRON	MRTFB	ENSG00000186260.17	ENST00000571589.6:ENST00000574998.5:ENST00000572400.5:ENST00000574045.5:ENST00000575537.5:ENST00000318282.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	171	2	6.7183	6.75972	6.80114	0.00368319	2.16497e-4	0.0389784	0.00477728
chr17	28553661	28553754	6873729	0	-	0.602151	(0.58,1]	chr17	697106	4	UTR3	UTR3:EXON_MRNA	PIGS	ENSG00000087111.21	ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000492429.2:ENST00000487231.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	1626	2	6.53575	6.759625	6.9835	1.87599e-6	5.51135e-8	0.00100747	1.58177e-5
chr4	2826324	2826414	2000382	0	+	0.522222	(0.485,0.523]	chr4	203975	1	EXON_MRNA	EXON_MRNA:INTRON	SH3BP2	ENSG00000087266.17	ENST00000503393.8:ENST00000504294.5:ENST00000508385.5:ENST00000511663.5:ENST00000512014.5:ENST00000435136.8:ENST00000511185.5:ENST00000511747.6:ENST00000356331.9:ENST00000515737.5:ENST00000515183.5:ENST00000505941.5:ENST00000510204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	167	2	6.59033	6.75942	6.92851	0.00353829	6.37267e-5	0.0381878	0.00195661
chr10	121770153	121770253	4775948	0	-	0.39	(0.36,0.39]	chr10	456611	53	INTRON	INTRON	ATE1	ENSG00000107669.19	ENST00000690984.1:ENST00000369043.8:ENST00000224652.12:ENST00000693411.1:ENST00000540606.7:ENST00000690773.1:ENST00000686894.1:ENST00000685890.1:ENST00000687583.1:ENST00000693276.1:ENST00000686451.1:ENST00000687319.1:ENST00000686786.1:ENST00000684967.1:ENST00000689057.1:ENST00000692329.1:ENST00000689393.1:ENST00000689571.1:ENST00000692718.1:ENST00000688526.1:ENST00000692034.1:ENST00000690128.1:ENST00000690748.1:ENST00000692491.1:ENST00000369040.9:ENST00000691087.1:ENST00000691830.1:ENST00000687089.1:ENST00000693486.1:ENST00000690355.1:ENST00000691765.1:ENST00000691226.1:ENST00000692743.1:ENST00000691108.1:ENST00000689297.1:ENST00000685427.1:ENST00000692513.1:ENST00000688057.1:ENST00000684876.1:ENST00000687607.1:ENST00000688424.1:ENST00000692255.1:ENST00000690706.1:ENST00000693395.1:ENST00000690324.1:ENST00000692278.1:ENST00000687144.1:ENST00000691573.1:ENST00000685289.1:ENST00000686907.1:ENST00000687206.1:ENST00000685007.1:ENST00000686811.1:ENST00000691041.1:ENST00000423243.7:ENST00000689834.1:ENST00000689455.1:ENST00000693655.1:ENST00000691728.1:ENST00000688153.1:ENST00000689974.1:ENST00000689199.1:ENST00000690488.1:ENST00000687458.1:ENST00000685072.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	171	2	6.70044	6.75912	6.8178	0.00347933	2.25359e-4	0.0378956	0.00492301
chr1	43596852	43596950	107419	0	+	0.469388	(0.45,0.485]	chr1	13240	39	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	2	504	2	5.58423	6.75905	7.93387	3.1159e-4	5.9923e-6	0.0100453	3.5765e-4
chr19	37927650	37927750	7254473	0	+	0.48	(0.45,0.485]	chr19	743659	198	INTRON	INTRON	SIPA1L3	ENSG00000105738.11	ENST00000222345.11	protein_coding	protein_coding	protein_coding	protein_coding	0	168	2	6.66919	6.758895000000001	6.8486	0.0035963	1.00721e-4	0.0384878	0.00275456
chr10	28678671	28678770	4470350	0	+	0.555556	(0.523,0.58]	chr10	427720	3	INTRON	INTRON	BAMBI	ENSG00000095739.11	ENST00000497699.1:ENST00000375533.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	167	2	6.55329	6.758789999999999	6.96429	0.00382069	5.38186e-5	0.0398603	0.0017322
chr6	97145026	97145124	3205994	0	-	0.357143	(0.33,0.36]	chr6	311258	30	UTR3	UTR3:EXON_MRNA	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8	protein_coding	protein_coding	protein_coding	protein_coding	0	169	2	6.73344	6.758464999999999	6.78349	0.00333555	1.50436e-4	0.0368376	0.00368673
chr9	7126965	7127065	4118672	0	+	0.44	(0.419,0.45]	chr9	391994	211	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000381306.7:ENST00000381309.8:ENST00000428870.6:ENST00000420847.2:ENST00000490806.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	180	2	6.38214	6.75806	7.13398	0.00241218	6.07209e-4	0.0309229	0.0100293
chr5	151787894	151787994	2567241	0	+	0.54	(0.523,0.58]	chr5	255262	1	SS5_PROX	SS5_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000523519.5:ENST00000520578.6:ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000677909.1:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000519832.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677252.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1:ENST00000679057.1:ENST00000677146.1:ENST00000677126.1:ENST00000678027.1:ENST00000678209.1:ENST00000678153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	363	2	5.58768	6.757865	7.92805	2.51374e-4	2.08025e-5	0.0089838	8.62639e-4
chr17	77484527	77484627	6805227	0	+	0.51	(0.485,0.523]	chr17	686821	5	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	170	2	6.56002	6.757809999999999	6.9556	0.00176368	1.90696e-4	0.0260917	0.0043642
chr11	75305754	75305853	5079163	0	-	0.424242	(0.419,0.45]	chr11	494228	22	INTRON	INTRON	ARRB1	ENSG00000137486.17	ENST00000420843.7:ENST00000360025.7:ENST00000532525.1:ENST00000524400.5:ENST00000533609.5:ENST00000533255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	184	2	6.28712	6.7575400000000005	7.22796	0.00204103	7.76382e-4	0.0283511	0.0118807
chr18	74916119	74916219	7092443	0	+	0.49	(0.485,0.523]	chr18	722466	103	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	171	2	6.51742	6.757250000000001	6.99708	0.00162697	2.15808e-4	0.0249683	0.00477041
chr7	73598483	73598573	3602841	0	-	0.544444	(0.523,0.58]	chr7	347628	4	INTRON	INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	484	2	5.44265	6.756755	8.07086	1.86729e-4	7.28062e-6	0.00769604	4.11009e-4
chr22	19909388	19909487	7765138	0	-	0.474747	(0.45,0.485]	chr22	813988	100	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	170	2	6.42921	6.756475	7.08374	0.00554658	5.00903e-5	0.0492398	0.00164756
chr12	287500	287599	5356101	0	-	0.333333	(0.33,0.36]	chr12	524209	9	INTRON	INTRON	KDM5A	ENSG00000073614.13	ENST00000399788.7:ENST00000540838.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	170	2	6.48602	6.756285	7.02655	0.00521233	7.47137e-5	0.0475559	0.00220991
chr3	17408221	17408321	1701446	0	-	0.39	(0.36,0.39]	chr3	177727	13	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	170	2	6.73967	6.75624	6.77281	0.00399663	1.84422e-4	0.0409578	0.00427863
chr9	137723359	137723458	4265524	0	+	0.686869	(0.58,1]	chr9	407352	57	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000460486.3:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	353	2	6.27894	6.755915	7.23289	3.89345e-4	8.41929e-7	0.0113333	9.38902e-5
chr6	131837083	131837183	3008312	0	+	0.4	(0.39,0.419]	chr6	294175	106	INTRON	INTRON	ENPP1	ENSG00000197594.14	ENST00000486853.1:ENST00000647893.1:ENST00000513998.5:ENST00000650507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	173	2	6.56375	6.755485	6.94722	0.00283905	3.30465e-4	0.033773	0.00649658
chr1	225878819	225878919	674433	0	-	0.52	(0.485,0.523]	chr1	79331	2	SS5_PROX	SS5_PROX:INTRON	TMEM63A	ENSG00000196187.12	ENST00000366835.8	protein_coding	protein_coding	protein_coding	protein_coding	1	418	2	4.94059	6.755255	8.56992	1.63137e-4	6.42458e-5	0.00446482	0.00391234
chr11	68351116	68351215	4882469	0	+	0.606061	(0.58,1]	chr11	470548	25	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	174	2	6.26544	6.75511	7.24478	3.78937e-4	2.06156e-4	0.011147	0.00461335
chr19	16458515	16458615	7344551	0	-	0.6	(0.58,1]	chr19	760800	159	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5:ENST00000597937.5:ENST00000593760.5:ENST00000596037.5:ENST00000597559.5:ENST00000602151.1:ENST00000595845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	174	2	6.26544	6.75511	7.24478	3.78937e-4	2.06156e-4	0.011147	0.00461335
chr13	112693543	112693643	5652575	0	+	0.52	(0.485,0.523]	chr13	554894	27	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5	protein_coding	protein_coding	protein_coding	protein_coding	1	437	2	5.31241	6.754615	8.19682	7.14509e-4	1.11381e-6	0.0157822	1.1161e-4
chr3	5211638	5211716	1399252	0	+	0.487179	(0.485,0.523]	chr3	149906	4	SS5_PROX	SS5_PROX:INTRON	EDEM1	ENSG00000134109.11	ENST00000256497.9	protein_coding	protein_coding	protein_coding	protein_coding	0	175	2	6.38149	6.75442	7.12735	0.00126041	3.18797e-4	0.0215793	0.00634142
chr14	54900820	54900920	5985234	0	-	0.41	(0.39,0.419]	chr14	586940	350	INTRON	INTRON	GCH1	ENSG00000131979.20	ENST00000395514.5:ENST00000543643.6:ENST00000491895.7:ENST00000254299.8:ENST00000536224.2:ENST00000395521.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	170	2	6.75426	6.75437	6.75448	0.00400086	1.95875e-4	0.0409634	0.00445752
chr1	27345056	27345149	71356	0	+	0.516129	(0.485,0.523]	chr1	8039	3	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	SYTL1	ENSG00000142765.18	ENST00000618673.4:ENST00000318074.9:ENST00000616558.5:ENST00000483926.5:ENST00000473280.1:ENST00000543823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	167	2	6.69995	6.753970000000001	6.80799	0.0023441	1.26446e-4	0.0305023	0.00325863
chr10	100549034	100549133	4569156	0	+	0.575758	(0.523,0.58]	chr10	436105	10	UTR3	UTR3:EXON_MRNA	HIF1AN	ENSG00000166135.14	ENST00000299163.7	protein_coding	protein_coding	protein_coding	protein_coding	4	1540	2	6.17558	6.753635	7.33169	9.67875e-6	2.71018e-7	0.00184763	4.42358e-5
chr6	167844095	167844195	3073512	0	+	0.4	(0.39,0.419]	chr6	298792	158	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000400825.8:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400824.8:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	491	2	5.74937	6.75305	7.75673	4.54056e-4	1.06879e-5	0.0122651	5.39197e-4
chr3	78849750	78849850	1836001	0	-	0.37	(0.36,0.39]	chr3	188602	1025	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	1	468	2	4.9633	6.752915	8.54253	0.00199449	9.4172e-7	0.0280626	1.00744e-4
chr5	209448	209548	2607676	0	-	0.53	(0.523,0.58]	chr5	259392	31	INTRON	INTRON	CCDC127	ENSG00000164366.4	ENST00000296824.4:ENST00000441693.2	protein_coding	protein_coding	protein_coding	protein_coding	0	166	2	6.5899	6.75284	6.91578	0.00356891	6.24234e-5	0.0383188	0.00192539
chr11	64306491	64306580	4868818	0	+	0.561798	(0.523,0.58]	chr11	467348	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ESRRA	ENSG00000173153.17	ENST00000406310.6:ENST00000000442.11:ENST00000677967.1:ENST00000539594.5:ENST00000405666.5:ENST00000468670.2	protein_coding	protein_coding	protein_coding	protein_coding	1	361	2	5.86874	6.752314999999999	7.63589	4.58646e-4	8.36582e-6	0.0123493	4.52433e-4
chr16	16124388	16124488	6407776	0	+	0.44	(0.419,0.45]	chr16	633165	2	SS3_PROX	SS3_PROX:INTRON	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000676806.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	389	2	5.45065	6.752235000000001	8.05382	4.48848e-4	6.19245e-5	0.0121771	0.00192058
chr7	158915992	158916090	3523149	0	+	0.418367	(0.39,0.419]	chr7	340293	13	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	171	2	6.64309	6.752225	6.86136	0.0033099	2.66223e-4	0.0368376	0.00556524
chr12	132950961	132951060	5542041	0	-	0.414141	(0.39,0.419]	chr12	547064	23	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	174	2	6.33308	6.7518650000000004	7.17065	0.00825437	6.02936e-5	0.0609913	0.00187763
chr11	70803026	70803125	5062313	0	-	0.606061	(0.58,1]	chr11	492707	41	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5:ENST00000460048.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	169	2	6.3691	6.75157	7.13404	4.87191e-4	1.49225e-4	0.0127785	0.00367368
chr18	79145155	79145254	7097701	0	+	0.606061	(0.58,1]	chr18	722822	9	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000586672.5:ENST00000590271.5:ENST00000490210.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	396	2	5.34062	6.75047	8.16032	3.24683e-4	3.10465e-7	0.010266	4.85487e-5
chr7	102043242	102043342	3436247	0	+	0.42	(0.419,0.45]	chr7	332534	147	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	173	2	6.5755	6.7504349999999995	6.92537	0.00347877	3.64701e-4	0.0378956	0.00699922
chr4	2826686	2826776	2000386	0	+	0.533333	(0.523,0.58]	chr4	203975	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SH3BP2	ENSG00000087266.17	ENST00000503393.8:ENST00000504294.5:ENST00000508385.5:ENST00000511663.5:ENST00000512014.5:ENST00000435136.8:ENST00000511185.5:ENST00000511747.6:ENST00000356331.9:ENST00000515737.5:ENST00000515183.5:ENST00000505941.5:ENST00000510204.5:ENST00000515802.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	174	2	6.19774	6.750315	7.30289	0.0072907	1.87561e-5	0.0567247	8.04567e-4
chr1	91729304	91729404	526240	0	-	0.4	(0.39,0.419]	chr1	61873	1	SS5_PROX	SS5_PROX:INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000468996.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	175	2	6.28991	6.75009	7.21027	0.00887176	5.37675e-5	0.0634853	0.0017322
chr2	3296199	3296299	1081069	0	-	0.59	(0.58,1]	chr2	117633	135	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	160	2	6.73933	6.7500800000000005	6.76083	0.00116939	4.22142e-5	0.0206836	0.0014546
chr2	20999689	20999784	1100417	0	-	0.452632	(0.45,0.485]	chr2	119926	5	EXON_LNCRNA	EXON_LNCRNA	ENSG00000261012	ENSG00000261012.2	ENST00000567376.2	lncRNA	lncRNA	lncRNA	lncRNA	3	614	2	5.43688	6.749665	8.06245	2.40226e-4	4.4554e-6	0.00875172	2.89801e-4
chr19	33203386	33203486	7240906	0	+	0.51	(0.485,0.523]	chr19	741409	4	SS5_PROX	SS5_PROX:INTRON	LRP3	ENSG00000130881.14	ENST00000592484.5:ENST00000253193.9:ENST00000590275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	611	2	4.47254	6.749275	9.02601	0.0015894	6.82161e-8	0.0246035	1.836e-5
chr3	66346705	66346804	1497725	0	+	0.444444	(0.419,0.45]	chr3	160493	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SLC25A26	ENSG00000144741.19	ENST00000676754.1:ENST00000686511.1:ENST00000690634.1:ENST00000689520.1:ENST00000686445.1:ENST00000691582.1:ENST00000691166.1:ENST00000691461.1:ENST00000354883.11:ENST00000693385.1:ENST00000688696.1:ENST00000691525.1:ENST00000690560.1:ENST00000336733.10:ENST00000464350.6:ENST00000483224.5:ENST00000413054.5:ENST00000484768.1:ENST00000685460.1:ENST00000690522.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	170	2	6.66471	6.74868	6.83265	0.00544202	1.81728e-4	0.0486855	0.00422429
chr13	113021243	113021343	5655837	0	+	0.4	(0.39,0.419]	chr13	555145	60	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	172	2	6.56375	6.748505	6.93326	0.00291102	3.30465e-4	0.0342042	0.00649658
chrX	2841406	2841505	7830936	0	+	0.393939	(0.39,0.419]	chrX	822184	109	INTRON	INTRON	GYG2	ENSG00000056998.20	ENST00000381163.7:ENST00000381161.5:ENST00000398806.8:ENST00000520904.3:ENST00000469234.6:ENST00000353656.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	169	2	6.6893	6.7482050000000005	6.80711	0.00448396	1.69216e-4	0.0436138	0.004014
chr20	38997759	38997858	7477991	0	+	0.494949	(0.485,0.523]	chr20	778747	25	INTRON	INTRON	DHX35	ENSG00000101452.15	ENST00000373325.6:ENST00000252011.8:ENST00000373323.8:ENST00000652169.1:ENST00000484417.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	174	2	6.38149	6.748165	7.11484	0.00129186	3.18797e-4	0.021949	0.00634142
chr2	149613632	149613732	920082	0	+	0.44	(0.419,0.45]	chr2	102788	192	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	1	500	2	4.68159	6.74811	8.81463	0.00382731	5.21005e-7	0.0399078	6.79881e-5
chr18	77091703	77091802	7181234	0	-	0.393939	(0.39,0.419]	chr18	730167	42	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000580402.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1:ENST00000583798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	189	2	6.14017	6.748010000000001	7.35585	0.00134625	0.00100955	0.0224436	0.0142887
chr2	208348523	208348623	1005526	0	+	0.44	(0.419,0.45]	chr2	110495	1	INTRON	INTRON	PIKFYVE	ENSG00000115020.17	ENST00000264380.9	protein_coding	protein_coding	protein_coding	protein_coding	0	176	2	6.44952	6.74796	7.0464	0.00281529	5.09118e-4	0.0336649	0.00884498
chr3	125031687	125031786	1901023	0	-	0.444444	(0.419,0.45]	chr3	192925	18	INTRON	INTRON	HEG1	ENSG00000173706.14	ENST00000311127.9	protein_coding	protein_coding	protein_coding	protein_coding	0	170	2	6.61339	6.747825	6.88226	0.0059347	1.58518e-4	0.0506158	0.00384084
chr11	64271212	64271312	5049350	0	-	0.53	(0.523,0.58]	chr11	490332	2	SS5_PROX	SS5_PROX:INTRON	BAD	ENSG00000002330.14	ENST00000309032.8:ENST00000394532.7:ENST00000544785.1:ENST00000394531.3:ENST00000493798.1:ENST00000492141.1	protein_coding	protein_coding	protein_coding	protein_coding	0	172	2	6.43184	6.747545000000001	7.06325	0.0014427	2.62665e-4	0.023287	0.00552802
chr8	66857811	66857911	3838441	0	+	0.41	(0.39,0.419]	chr8	368518	65	INTRON	INTRON	SGK3	ENSG00000104205.16	ENST00000521198.7:ENST00000396596.2:ENST00000522398.5:ENST00000520976.5:ENST00000345714.8	protein_coding	protein_coding	protein_coding	protein_coding	0	169	2	6.60375	6.74726	6.89077	0.00520388	1.33877e-4	0.0475031	0.0033877
chr22	45290524	45290622	7738854	0	+	0.5	(0.485,0.523]	chr22	811371	10	INTRON	INTRON	UPK3A	ENSG00000100373.10	ENST00000216211.9:ENST00000396082.2	protein_coding	protein_coding	protein_coding	protein_coding	0	179	2	6.25753	6.746415	7.2353	0.00101791	4.52177e-4	0.0191524	0.00816702
chr1	1108959	1109059	380272	0	-	0.62	(0.58,1]	chr1	42816	17	INTRON	INTRON	C1orf159	ENSG00000131591.18	ENST00000379339.5:ENST00000379325.7:ENST00000421241.7:ENST00000467751.5:ENST00000477196.5:ENST00000434641.5:ENST00000482816.5:ENST00000462097.5:ENST00000475119.5:ENST00000472741.5:ENST00000480643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	169	2	6.14427	6.74599	7.34771	0.00407804	5.73693e-6	0.0413652	3.48335e-4
chr1	17676682	17676782	54978	0	+	0.62	(0.58,1]	chr1	5603	117	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	349	2	5.3376	6.74597	8.15434	4.47395e-5	2.41008e-5	0.00368958	9.61888e-4
chr4	153487785	153487885	2151096	0	+	0.56	(0.523,0.58]	chr4	217962	135	INTRON	INTRON	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000445960.5:ENST00000409959.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	165	2	6.64312	6.745785	6.84845	0.00323048	7.65992e-5	0.0362983	0.00224403
chr11	120328712	120328808	4951107	0	+	0.385417	(0.36,0.39]	chr11	478339	7	INTRON	INTRON	TLCD5	ENSG00000181264.9	ENST00000531346.1:ENST00000314475.6:ENST00000375095.3:ENST00000529187.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	379	2	5.8076	6.745635	7.68367	7.02479e-4	1.88098e-5	0.015621	8.06081e-4
chr2	665842	665940	1079803	0	-	0.55102	(0.523,0.58]	chr2	117536	21	UTR3	UTR3:EXON_MRNA	TMEM18	ENSG00000151353.15	ENST00000281017.8	protein_coding	protein_coding	protein_coding	protein_coding	0	165	2	6.6256	6.74559	6.86558	0.00333843	7.2723e-5	0.0368376	0.00216169
chr3	172671588	172671688	1959183	0	-	0.33	(0.29,0.33]	chr3	199166	231	INTRON	INTRON	NCEH1	ENSG00000144959.11	ENST00000475381.7:ENST00000538775.5:ENST00000543711.5:ENST00000424772.2:ENST00000421723.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	171	2	6.44564	6.74499	7.04434	0.0012838	2.86305e-4	0.0218621	0.00587031
chr2	101729131	101729231	860947	0	+	0.42	(0.419,0.45]	chr2	97528	302	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	0	171	2	6.46688	6.744244999999999	7.02161	0.00757951	1.07601e-4	0.0579104	0.00289045
chr1	55058647	55058747	132592	0	+	0.58	(0.523,0.58]	chr1	16379	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1:ENST00000673913.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	175	2	6.33678	6.7441949999999995	7.15161	0.0012128	3.44853e-4	0.0210863	0.00672121
chr2	10190304	10190403	718204	0	+	0.494949	(0.485,0.523]	chr2	84002	342	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	165	2	6.67798	6.743964999999999	6.80995	0.00300122	9.11162e-5	0.0348875	0.00255001
chr15	66428230	66428330	6137105	0	+	0.48	(0.45,0.485]	chr15	603713	259	INTRON	INTRON	MAP2K1	ENSG00000169032.11	ENST00000425818.2:ENST00000689951.1:ENST00000685763.1:ENST00000307102.10:ENST00000691576.1:ENST00000686347.1:ENST00000691077.1:ENST00000687191.1:ENST00000691937.1:ENST00000692487.1:ENST00000685172.1:ENST00000692683.1:ENST00000684779.1:ENST00000693150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	175	2	6.36817	6.743355	7.11854	0.00155043	3.97249e-4	0.0243127	0.00741985
chr10	79166128	79166228	4533018	0	+	0.67	(0.58,1]	chr10	432438	36	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	159	2	6.68799	6.74322	6.79845	0.00130716	3.72743e-5	0.0220198	0.00131851
chr16	85514883	85514983	6518220	0	+	0.5	(0.485,0.523]	chr16	646391	1556	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	181	2	6.2048	6.742805	7.28081	9.29716e-4	5.23665e-4	0.0182159	0.0090184
chr21	43959033	43959133	7625374	0	+	0.5	(0.485,0.523]	chr21	796924	34	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000448845.1:ENST00000422850.5:ENST00000546158.1	protein_coding	protein_coding	protein_coding	protein_coding	0	166	2	6.4776	6.7425999999999995	7.0076	0.00436205	5.00839e-5	0.0427656	0.00164756
chr6	15392037	15392137	2857968	0	+	0.5	(0.485,0.523]	chr6	279184	174	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	0	166	2	6.66134	6.742395	6.82345	0.00227572	1.41724e-4	0.0301405	0.00352935
chr20	62337188	62337287	7584282	0	-	0.585859	(0.58,1]	chr20	792665	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LAMA5	ENSG00000130702.15	ENST00000252999.7:ENST00000474128.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	163	2	6.31193	6.742235	7.17254	0.00289626	1.05286e-5	0.03418	5.33404e-4
chr11	70762968	70763068	5061911	0	-	0.6	(0.58,1]	chr11	492701	451	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	163	2	6.51182	6.741795	6.97177	7.01049e-4	9.48877e-5	0.0156107	0.00262417
chr14	94308363	94308460	6046256	0	-	0.412371	(0.39,0.419]	chr14	593049	18	INTRON	INTRON	SERPINA6	ENSG00000170099.6	ENST00000341584.4:ENST00000555056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	172	2	6.52237	6.741709999999999	6.96105	0.00276944	3.69587e-4	0.0332691	0.00704866
chr17	17728057	17728157	6689316	0	+	0.6	(0.58,1]	chr17	671344	35	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	160	2	6.66224	6.74164	6.82104	9.78215e-4	5.8343e-5	0.0187475	0.00183149
chr5	80985917	80986017	2468493	0	+	0.35	(0.33,0.36]	chr5	246550	245	INTRON	INTRON	RASGRF2	ENSG00000113319.13	ENST00000265080.9:ENST00000503795.1:ENST00000638442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	169	2	6.42699	6.74153	7.05607	0.00578704	6.8547e-5	0.0501412	0.00207014
chr15	80900519	80900618	6164848	0	+	0.575758	(0.523,0.58]	chr15	606699	41	INTRON	INTRON	CEMIP	ENSG00000103888.17	ENST00000220244.7:ENST00000394685.8:ENST00000356249.9	protein_coding	protein_coding	protein_coding	protein_coding	0	169	2	6.49924	6.741095	6.98295	0.00168728	2.16101e-4	0.0254298	0.00477041
chr3	177096269	177096368	1960387	0	-	0.373737	(0.36,0.39]	chr3	199296	47	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	623	2	4.81099	6.741085	8.67118	0.00114639	6.29214e-7	0.0204766	7.75874e-5
chr1	236007930	236008030	693167	0	-	0.44	(0.419,0.45]	chr1	81538	137	INTRON	INTRON	NID1	ENSG00000116962.15	ENST00000366595.7:ENST00000264187.7	protein_coding	protein_coding	protein_coding	protein_coding	0	173	2	6.34633	6.74071	7.13509	0.00923958	7.8188e-5	0.0644666	0.00227541
chr3	123570866	123570966	1895287	0	-	0.37	(0.36,0.39]	chr3	192363	27	INTRON	INTRON	HACD2	ENSG00000206527.10	ENST00000383657.10:ENST00000469317.1	protein_coding	protein_coding	protein_coding	protein_coding	0	169	2	6.49527	6.7405	6.98573	0.00611969	1.01347e-4	0.0517362	0.00276585
chr20	44203670	44203767	7564906	0	-	0.43299	(0.419,0.45]	chr20	790118	2	INTRON	INTRON	OSER1	ENSG00000132823.11	ENST00000255174.3:ENST00000372970.6	protein_coding	protein_coding	protein_coding	protein_coding	1	478	2	5.53314	6.740460000000001	7.94778	8.05327e-4	7.31579e-6	0.0168786	4.11658e-4
chr15	28652781	28652880	6068886	0	+	0.545455	(0.523,0.58]	chr15	596168	8	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	1	357	2	5.64844	6.74022	7.832	3.0665e-4	1.71084e-5	0.00996904	7.52168e-4
chr8	130428500	130428599	4083487	0	-	0.464646	(0.45,0.485]	chr8	388192	8	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000524299.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	169	2	6.36767	6.740025	7.11238	0.00618594	4.5955e-5	0.0519442	0.00154731
chr10	132573741	132573841	4617198	0	+	0.49	(0.485,0.523]	chr10	441139	352	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	169	2	6.31214	6.73992	7.1677	0.00589975	3.05856e-5	0.0506158	0.00114404
chr3	73055341	73055441	1503318	0	+	0.46	(0.45,0.485]	chr3	160786	76	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	167	2	6.64799	6.73897	6.82995	0.00267274	1.80357e-4	0.0327654	0.00419938
chr10	132713051	132713150	4618598	0	+	0.525253	(0.523,0.58]	chr10	441181	22	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000487614.1:ENST00000498337.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	165	2	6.49658	6.73834	6.9801	0.00424382	5.12704e-5	0.0422099	0.00167326
chr15	67102123	67102223	6139439	0	+	0.49	(0.485,0.523]	chr15	603944	27	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1:ENST00000559092.1:ENST00000560175.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	165	2	6.69995	6.73826	6.77657	0.00248912	1.26446e-4	0.0315244	0.00325863
chr6	89845173	89845271	2953590	0	+	0.5	(0.485,0.523]	chr6	290725	39	INTRON	INTRON	CASP8AP2	ENSG00000118412.13	ENST00000552401.5:ENST00000419040.6:ENST00000547893.5:ENST00000237177.10:ENST00000551025.4:ENST00000548224.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	165	2	6.69995	6.73826	6.77657	0.00248912	1.26446e-4	0.0315244	0.00325863
chr10	18572457	18572556	4642453	0	-	0.414141	(0.39,0.419]	chr10	443321	201	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	170	2	6.584	6.737275	6.89055	0.00314209	3.12789e-4	0.0358106	0.00625974
chr7	17019940	17020040	3323953	0	+	0.42	(0.419,0.45]	chr7	322059	1032	INTRON	INTRON	AHR	ENSG00000106546.14	ENST00000645559.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	169	2	6.728	6.73719	6.74638	0.00473615	2.41873e-4	0.0449264	0.00518926
chr1	43559423	43559522	107033	0	+	0.545455	(0.523,0.58]	chr1	13192	51	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	1284	2	6.13223	6.736775	7.34132	4.87366e-5	5.78249e-8	0.00384834	1.62399e-5
chr13	112972644	112972744	5655347	0	+	0.45	(0.419,0.45]	chr13	555120	28	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	184	2	6.21151	6.736599999999999	7.26169	0.00192168	9.41863e-4	0.0274718	0.0135546
chr20	4949605	4949705	7518056	0	-	0.45	(0.419,0.45]	chr20	784900	165	INTRON	INTRON	SLC23A2	ENSG00000089057.15	ENST00000379333.5:ENST00000338244.6:ENST00000468355.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	171	2	6.5755	6.736269999999999	6.89704	0.0036542	3.64701e-4	0.0389784	0.00699922
chr21	45109242	45109342	7629006	0	+	0.61	(0.58,1]	chr21	797509	341	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	334	2	6.0081	6.73611	7.46412	2.28899e-4	2.2569e-6	0.00852546	1.81011e-4
chr16	570760	570860	6368122	0	+	0.56	(0.523,0.58]	chr16	627948	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PIGQ	ENSG00000007541.17	ENST00000293874.2:ENST00000409527.6:ENST00000321878.10:ENST00000439574.1:ENST00000422307.6:ENST00000636657.1:ENST00000026218.9:ENST00000470411.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	167	2	6.35489	6.735015000000001	7.11514	0.00549977	3.37828e-5	0.0489559	0.00122993
chr7	713304	713401	3525232	0	-	0.742268	(0.58,1]	chr7	340440	2	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000537384.6:ENST00000403562.5:ENST00000417852.5:ENST00000488474.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	158	2	6.65271	6.734805	6.8169	0.00141059	3.50609e-5	0.0229261	0.00126332
chr1	21642870	21642970	419897	0	-	0.53	(0.523,0.58]	chr1	49018	161	INTRON	INTRON	RAP1GAP	ENSG00000076864.21	ENST00000374765.9:ENST00000471600.6:ENST00000542643.6:ENST00000611549.4:ENST00000495204.5:ENST00000374757.7:ENST00000317967.11:ENST00000447293.5:ENST00000482984.5:ENST00000464457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	167	2	6.54248	6.734655	6.92683	0.00188118	1.90498e-4	0.0270971	0.0043642
chr13	100524312	100524411	5647361	0	+	0.40404	(0.39,0.419]	chr13	554135	84	INTRON	INTRON	PCCA	ENSG00000175198.17	ENST00000376286.8:ENST00000376279.7:ENST00000376285.6:ENST00000647303.1:ENST00000637657.1:ENST00000636366.1:ENST00000636475.1:ENST00000458283.5:ENST00000428969.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	170	2	6.56375	6.7343399999999995	6.90493	0.00306243	3.30465e-4	0.0352953	0.00649658
chr6	128432731	128432831	3256296	0	-	0.27	[0,0.29]	chr6	315223	230	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000524534.5:ENST00000495748.5:ENST00000525459.1:ENST00000392449.4:ENST00000532751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	170	2	6.32821	6.734105	7.14	5.52804e-4	2.85379e-4	0.0137007	0.00585704
chr20	44401738	44401800	7482929	0	+	0.612903	(0.58,1]	chr20	779632	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000682427.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	160	2	6.59969	6.733815	6.86794	8.82366e-4	7.15008e-5	0.0176886	0.00213784
chr8	47448640	47448740	3814112	0	+	0.49	(0.485,0.523]	chr8	367313	77	INTRON	INTRON	SPIDR	ENSG00000164808.17	ENST00000541342.2:ENST00000518074.5:ENST00000297423.9:ENST00000521550.5:ENST00000524126.5:ENST00000524141.5:ENST00000519661.5:ENST00000522117.5:ENST00000524033.5:ENST00000524006.5:ENST00000521214.5:ENST00000519401.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	164	2	6.7116	6.7338000000000005	6.756	0.00281636	1.07056e-4	0.0336649	0.00288045
chr9	133854489	133854589	4428943	0	-	0.59	(0.58,1]	chr9	423304	198	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	0	159	2	6.66224	6.733655	6.80507	0.00101308	5.8343e-5	0.0191342	0.00183149
chr11	64146953	64147052	5049047	0	-	0.434343	(0.419,0.45]	chr11	490257	202	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	388	2	5.95889	6.73263	7.50637	0.00123559	1.3802e-5	0.0213594	6.44623e-4
chr3	78981715	78981815	1837323	0	-	0.58	(0.523,0.58]	chr3	188611	424	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	1	456	2	5.74935	6.732495	7.71564	2.908e-4	4.99148e-6	0.00969131	3.15032e-4
chr19	323635	323735	7303112	0	-	0.46	(0.45,0.485]	chr19	752407	96	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	169	2	6.50408	6.732419999999999	6.96076	0.00209187	2.71658e-4	0.0287557	0.00565001
chr2	46302132	46302232	784689	0	+	0.47	(0.45,0.485]	chr2	89746	38	INTRON	INTRON	EPAS1	ENSG00000116016.14	ENST00000460015.1:ENST00000449347.5:ENST00000263734.5:ENST00000467888.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	174	2	6.34422	6.73138	7.11854	0.00155043	4.24458e-4	0.0243127	0.00777807
chr11	70535230	70535330	5059625	0	-	0.48	(0.45,0.485]	chr11	492663	319	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	362	2	5.68532	6.731165	7.77701	4.26981e-4	1.92611e-5	0.0118572	8.20396e-4
chr4	2946111	2946211	2183681	0	-	0.61	(0.58,1]	chr4	221540	3	SS5_PROX	SS5_PROX:INTRON	NOP14	ENSG00000087269.16	ENST00000416614.7:ENST00000314262.10:ENST00000502735.5:ENST00000398071.4	protein_coding	protein_coding	protein_coding	protein_coding	1	332	2	5.978	6.731165	7.48433	2.18425e-4	2.51602e-6	0.00835357	1.94522e-4
chr16	68100896	68100996	6474868	0	+	0.38	(0.36,0.39]	chr16	643049	113	INTRON	INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	0	167	2	6.70719	6.7311250000000005	6.75506	0.00423228	1.93748e-4	0.0422099	0.00442349
chr11	70657830	70657929	5060853	0	-	0.545455	(0.523,0.58]	chr11	492672	30	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	164	2	6.49658	6.730435	6.96429	0.00424382	5.38186e-5	0.0422099	0.0017322
chr17	43568700	43568800	6739252	0	+	0.43	(0.419,0.45]	chr17	678633	235	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	171	2	6.36713	6.73035	7.09357	0.00893106	8.791e-5	0.0637469	0.00248329
chr5	32233437	32233520	2630726	0	-	0.46988	(0.45,0.485]	chr5	261045	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MTMR12	ENSG00000150712.11	ENST00000280285.9:ENST00000382142.8:ENST00000264934.5:ENST00000510216.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	362	2	5.74781	6.7301400000000005	7.71247	4.85705e-4	1.58252e-5	0.012769	7.12006e-4
chr10	18572756	18572856	4642456	0	-	0.44	(0.419,0.45]	chr10	443321	204	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	172	2	6.49275	6.7298	6.96685	0.00323624	4.54324e-4	0.0363264	0.00818426
chr6	35493800	35493900	3125633	0	-	0.58	(0.523,0.58]	chr6	304825	67	INTRON	INTRON	TEAD3	ENSG00000007866.22	ENST00000338863.13:ENST00000402886.9:ENST00000639578.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	165	2	6.41733	6.729505	7.04168	0.00490887	4.24161e-5	0.0457614	0.00145737
chr19	323934	324034	7303115	0	-	0.5	(0.485,0.523]	chr19	752407	99	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	167	2	6.51742	6.7294599999999996	6.9415	0.00181258	2.15808e-4	0.0264638	0.00477041
chrX	47208275	47208370	7877694	0	+	0.526316	(0.523,0.58]	chrX	825627	15	INTRON	INTRON	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11	protein_coding	protein_coding	protein_coding	protein_coding	1	355	2	5.59652	6.72938	7.86224	2.88079e-4	2.02202e-5	0.00964028	8.47617e-4
chr8	130372970	130373070	4082928	0	-	0.45	(0.419,0.45]	chr8	388177	108	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000521075.5:ENST00000520927.5:ENST00000524299.1:ENST00000521426.5:ENST00000520625.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	173	2	6.28205	6.72875	7.17545	0.0102557	6.97411e-5	0.0684871	0.00209831
chr13	20497093	20497193	5662811	0	-	0.51	(0.485,0.523]	chr13	556208	72	INTRON	INTRON	CRYL1	ENSG00000165475.15	ENST00000643035.1:ENST00000644593.1:ENST00000298248.12:ENST00000644872.1:ENST00000382812.5:ENST00000643750.1:ENST00000644153.1:ENST00000643887.1:ENST00000644167.1:ENST00000646414.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	164	2	6.68077	6.72867	6.77657	0.00248912	1.33825e-4	0.0315244	0.00338739
chr11	70371424	70371522	4886742	0	+	0.479592	(0.45,0.485]	chr11	471245	2	EXON_MRNA	EXON_MRNA:INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000648755.1:ENST00000644155.1:ENST00000526262.5:ENST00000638133.1:ENST00000530548.5:ENST00000525922.2:ENST00000531657.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	169	2	6.4823	6.72844	6.97458	0.00203802	2.88849e-4	0.0283511	0.00590733
chr22	32805118	32805218	7717660	0	+	0.58	(0.523,0.58]	chr22	807776	26	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	0	197	2	5.91127	6.7284299999999995	7.54559	0.00111349	5.51177e-4	0.0152496	0.0136794
chr5	139652964	139653063	2549690	0	+	0.50505	(0.485,0.523]	chr5	253168	14	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	2	480	2	5.07761	6.72837	8.37913	9.63913e-5	2.51643e-5	0.00548947	9.92777e-4
chr2	26096361	26096461	731443	0	+	0.55	(0.523,0.58]	chr2	85215	537	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	163	2	6.64312	6.728345	6.81357	0.00323048	8.51182e-5	0.0362983	0.00242869
chr20	64269797	64269896	7511210	0	+	0.666667	(0.58,1]	chr20	783907	14	INTRON	INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609818.1	protein_coding	protein_coding	protein_coding	protein_coding	2	590	2	5.57397	6.728149999999999	7.88233	6.22137e-5	8.55795e-7	0.00438784	9.48667e-5
chr1	8553082	8553182	393077	0	-	0.55	(0.523,0.58]	chr1	45029	114	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000469251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	163	2	6.67755	6.727685	6.77782	0.00302793	9.47932e-5	0.0350226	0.00262417
chr14	104891703	104891800	5926143	0	+	0.649485	(0.58,1]	chr14	579999	16	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	161	2	6.51182	6.72734	6.94286	7.47593e-4	9.48877e-5	0.0161372	0.00262417
chr20	10427033	10427133	7524950	0	-	0.46	(0.45,0.485]	chr20	785433	59	INTRON	INTRON	MKKS	ENSG00000125863.20:ENSG00000285508.1	ENST00000347364.7:ENST00000651692.1:ENST00000652676.1:ENST00000399054.6:ENST00000609375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	367	2	5.42346	6.726585	8.02971	2.56715e-4	4.34881e-5	0.00907079	0.00148933
chr10	131957551	131957650	4616603	0	+	0.555556	(0.523,0.58]	chr10	441116	17	UTR3	UTR3:EXON_MRNA	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	164	2	6.64525	6.726405	6.80756	0.00236582	1.40789e-4	0.0306624	0.00351181
chr8	143322929	143323023	4095557	0	-	0.659574	(0.58,1]	chr8	389125	12	INTRON	INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	165	2	6.16945	6.72614	7.28283	0.00387582	7.19115e-6	0.0401256	4.08425e-4
chr17	38743011	38743109	6895605	0	-	0.44898	(0.419,0.45]	chr17	700401	22	INTRON	INTRON	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000611883.4:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	0	182	2	6.04441	6.72608	7.40775	0.0149622	3.58484e-5	0.0835955	0.00128261
chr7	2047812	2047912	3530710	0	-	0.49	(0.485,0.523]	chr7	340995	328	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	373	2	6.171	6.725905	7.28081	9.29716e-4	3.27856e-6	0.0182159	2.34008e-4
chr17	80024501	80024601	6982161	0	-	0.52	(0.485,0.523]	chr17	713081	105	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7	protein_coding	protein_coding	protein_coding	protein_coding	1	356	2	5.85014	6.72551	7.60088	4.87357e-4	9.37699e-6	0.0127785	4.91366e-4
chr9	35728603	35728702	4298430	0	-	0.50505	(0.485,0.523]	chr9	411216	25	INTRON	INTRON	TLN1	ENSG00000137076.21	ENST00000314888.10:ENST00000378192.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	163	2	6.69488	6.725440000000001	6.756	0.00290687	1.07056e-4	0.0342042	0.00288045
chr15	52136156	52136256	6261566	0	-	0.46	(0.45,0.485]	chr15	617063	4	SS3_PROX	SS3_PROX:INTRON	GNB5	ENSG00000069966.19	ENST00000261837.12:ENST00000396335.8:ENST00000358784.11:ENST00000559348.5:ENST00000558519.5:ENST00000561313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	174	2	6.31986	6.7254000000000005	7.13094	0.00151409	4.53935e-4	0.0240218	0.00818426
chr16	48298561	48298661	6445907	0	+	0.45	(0.419,0.45]	chr16	639328	20	INTRON	INTRON	LONP2	ENSG00000102910.14	ENST00000285737.9:ENST00000535754.5:ENST00000416006.7:ENST00000566755.5:ENST00000570174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	182	2	6.21151	6.7254	7.23929	0.00200016	9.41863e-4	0.0280981	0.0135546
chr7	76997126	76997225	3398771	0	+	0.59596	(0.58,1]	chr7	328286	64	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	176	2	6.12444	6.72492	7.3254	3.17437e-4	3.15151e-4	0.0100952	0.00632787
chr1	48226181	48226280	120961	0	+	0.494949	(0.485,0.523]	chr1	15165	10	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	163	2	6.55373	6.7246749999999995	6.89562	0.00378829	7.04028e-5	0.0396337	0.00211367
chr6	15281851	15281951	2856865	0	+	0.42	(0.419,0.45]	chr6	279178	325	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	0	169	2	6.59547	6.72447	6.85347	0.00394037	3.45753e-4	0.0406053	0.00672667
chr9	124489384	124489483	4402616	0	-	0.474747	(0.45,0.485]	chr9	419805	60	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	0	164	2	6.65208	6.724335	6.79659	0.00371059	1.17286e-4	0.039096	0.00309421
chr14	103105750	103105839	5921876	0	+	0.573034	(0.523,0.58]	chr14	579221	3	INTRON	INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	163	2	6.51574	6.723935	6.93213	0.00409625	5.9384e-5	0.0413652	0.00185705
chr18	58046118	58046199	7071460	0	+	0.333333	(0.33,0.36]	chr18	721083	1	SS5_PROX	SS5_PROX:INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	167	2	6.57498	6.72382	6.87266	0.00258098	2.7029e-4	0.0321738	0.00563203
chr5	65545325	65545424	2683886	0	-	0.454545	(0.45,0.485]	chr5	264932	21	INTRON	INTRON	CENPK	ENSG00000123219.13	ENST00000514814.5:ENST00000396679.6:ENST00000242872.7:ENST00000508421.5:ENST00000510693.5:ENST00000506282.6:ENST00000505960.5:ENST00000509397.5:ENST00000515497.5:ENST00000515873.5:ENST00000510768.5:ENST00000502997.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	164	2	6.58155	6.723535	6.86552	0.00421879	9.58344e-5	0.0421633	0.00264329
chr1	2183395	2183493	4470	0	+	0.510204	(0.485,0.523]	chr1	1030	11	INTRON	INTRON	PRKCZ	ENSG00000067606.17	ENST00000378567.8:ENST00000400921.6:ENST00000461106.6:ENST00000479263.5:ENST00000478770.6:ENST00000505322.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	171	2	6.35753	6.723509999999999	7.08949	0.00135789	3.41236e-4	0.0224546	0.00667174
chr15	73708689	73708783	6150730	0	+	0.5	(0.485,0.523]	chr15	604959	1	SS5_PROX	SS5_PROX:INTRON	CD276	ENSG00000103855.18	ENST00000537340.6:ENST00000318424.9:ENST00000318443.10:ENST00000561213.5:ENST00000560928.5:ENST00000564751.5:ENST00000561176.5:ENST00000559073.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	163	2	6.71888	6.7235	6.72812	0.00272951	1.19549e-4	0.0331786	0.00313373
chr14	94308460	94308557	6046257	0	-	0.536082	(0.523,0.58]	chr14	593049	19	INTRON	INTRON	SERPINA6	ENSG00000170099.6	ENST00000341584.4:ENST00000555056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	470	2	5.88046	6.72348	7.5665	2.20743e-4	8.08882e-6	0.00839442	4.41353e-4
chr9	137723159	137723259	4265522	0	+	0.69	(0.58,1]	chr9	407352	55	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000460486.3:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	162	2	6.24245	6.72168	7.20091	0.00334087	9.5483e-6	0.0368376	4.9724e-4
chr11	61272898	61272998	5041305	0	-	0.39	(0.36,0.39]	chr11	488757	3	SS5_PROX	SS5_PROX:INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10:ENST00000535710.1:ENST00000398808.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	457	2	5.46304	6.72153	7.98002	7.70069e-4	5.3604e-6	0.0164417	3.31343e-4
chr10	58397739	58397838	4489663	0	+	0.464646	(0.45,0.485]	chr10	429564	28	UTR3	UTR3:EXON_MRNA	TFAM	ENSG00000108064.11	ENST00000487519.6	protein_coding	protein_coding	protein_coding	protein_coding	0	166	2	6.56752	6.7212	6.87488	0.00245783	2.2698e-4	0.0312836	0.00495264
chr2	156174792	156174892	1286577	0	-	0.49	(0.485,0.523]	chr2	138345	238	INTRON	INTRON	LINC01876	ENSG00000226383.7	ENST00000635799.1:ENST00000662073.1:ENST00000659502.1:ENST00000428651.2:ENST00000661513.1:ENST00000657334.1:ENST00000638047.1:ENST00000637554.1:ENST00000636956.1:ENST00000637665.1:ENST00000637476.1:ENST00000637324.1	lncRNA	lncRNA	lncRNA	lncRNA	0	163	2	6.68077	6.720685	6.7606	0.00256606	1.33825e-4	0.0320885	0.00338739
chr5	14151366	14151466	2383430	0	+	0.38	(0.36,0.39]	chr5	238468	71	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000502816.1:ENST00000505971.5:ENST00000512070.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	451	2	5.32278	6.72059	8.1184	0.00100868	3.50876e-6	0.0191322	2.46356e-4
chr16	85232365	85232465	6515392	0	+	0.62	(0.58,1]	chr16	646377	46	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	172	2	6.1825	6.71954	7.25658	3.6888e-4	2.66047e-4	0.0110278	0.00556524
chr16	618859	618959	6368582	0	+	0.62	(0.58,1]	chr16	628044	2	INTRON	INTRON	RAB40C	ENSG00000197562.10	ENST00000535977.5:ENST00000569575.5:ENST00000539661.5:ENST00000566290.5:ENST00000248139.8:ENST00000568586.5:ENST00000538492.5:ENST00000565511.5:ENST00000509637.6:ENST00000563109.1:ENST00000564703.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	157	2	6.68251	6.7192799999999995	6.75605	0.00112759	5.46055e-5	0.0202727	0.00175188
chr10	127428899	127428999	4612237	0	+	0.57	(0.523,0.58]	chr10	440909	25	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2	protein_coding	protein_coding	protein_coding	protein_coding	0	170	2	6.17383	6.719245	7.26466	0.00760615	2.11593e-5	0.0579698	8.73984e-4
chr1	43565999	43566099	107099	0	+	0.67	(0.58,1]	chr1	13192	117	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	161	2	6.4658	6.7187850000000005	6.97177	7.01049e-4	1.09908e-4	0.0156107	0.00294443
chr11	70763768	70763868	5061919	0	-	0.62	(0.58,1]	chr11	492701	459	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	168	2	6.26544	6.718674999999999	7.17191	4.47193e-4	2.06156e-4	0.0121697	0.00461335
chr2	235998910	235999010	1067605	0	+	0.49	(0.485,0.523]	chr2	115748	299	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5:ENST00000418654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	166	2	6.49563	6.718565	6.9415	0.00181258	2.29841e-4	0.0264638	0.00498593
chr10	72062562	72062660	4707404	0	-	0.612245	(0.58,1]	chr10	448659	37	UTR3	UTR3:EXON_MRNA	SPOCK2	ENSG00000107742.14	ENST00000373109.7:ENST00000317376.8	protein_coding	protein_coding	protein_coding	protein_coding	2	488	2	6.06683	6.7181750000000005	7.36952	2.84773e-4	3.21325e-7	0.00957277	4.95793e-5
chr5	651593	651692	2378798	0	+	0.525253	(0.523,0.58]	chr5	237646	33	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	169	2	6.19774	6.71817	7.2386	0.0072907	2.29668e-5	0.0567247	9.29664e-4
chr7	583712	583810	3523923	0	-	0.520408	(0.485,0.523]	chr7	340376	40	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000400758.6:ENST00000430040.5	protein_coding	protein_coding	protein_coding	protein_coding	0	162	2	6.62603	6.71799	6.80995	0.00330946	9.11162e-5	0.0368376	0.00255001
chr10	103701009	103701109	4757110	0	-	0.46	(0.45,0.485]	chr10	454791	75	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	164	2	6.48824	6.71777	6.9473	0.00499158	7.52721e-5	0.0463896	0.00222212
chr4	102688274	102688374	2294085	0	-	0.52	(0.485,0.523]	chr4	230705	50	INTRON	INTRON	MANBA	ENSG00000109323.11	ENST00000644159.1:ENST00000647097.2:ENST00000514430.5:ENST00000646727.1:ENST00000644545.1:ENST00000646311.1:ENST00000647129.1:ENST00000642252.1:ENST00000645558.1:ENST00000645348.1:ENST00000505239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	162	2	6.66087	6.71754	6.77421	0.00309962	1.01398e-4	0.0355173	0.00276585
chr10	18567660	18567760	4642405	0	-	0.42	(0.419,0.45]	chr10	443321	153	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	168	2	6.59547	6.71706	6.83865	0.00404244	3.45753e-4	0.0412991	0.00672667
chr2	239084742	239084839	1389522	0	-	0.556701	(0.523,0.58]	chr2	148605	1	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000487617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	355	2	5.47717	6.7167650000000005	7.95636	2.37025e-4	2.96207e-5	0.0086821	0.00111477
chr3	24482422	24482522	1716352	0	-	0.39	(0.36,0.39]	chr3	178018	231	INTRON	INTRON	THRB	ENSG00000151090.20	ENST00000646209.2:ENST00000396671.7:ENST00000356447.9:ENST00000646432.1:ENST00000643772.1:ENST00000645139.1:ENST00000642307.1:ENST00000644321.1:ENST00000646966.1:ENST00000416420.5:ENST00000413780.5:ENST00000447875.5:ENST00000453729.6:ENST00000431815.5:ENST00000447414.5:ENST00000428492.5:ENST00000418247.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	372	2	5.80064	6.71667	7.6327	7.74002e-4	1.92101e-5	0.0164522	8.19063e-4
chr5	307260	307353	2377997	0	+	0.645161	(0.58,1]	chr5	237477	1	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1:ENST00000511482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	156	2	6.63475	6.7166	6.79845	0.00146621	3.72743e-5	0.023492	0.00131851
chr2	25744776	25744876	1109108	0	-	0.34	(0.33,0.36]	chr2	120953	3	SS3_PROX	SS3_PROX:INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000404843.5:ENST00000673455.1:ENST00000672666.1	protein_coding	protein_coding	protein_coding	protein_coding	0	164	2	6.66697	6.71635	6.76573	0.00376513	1.5822e-4	0.0395491	0.00384084
chr10	103702407	103702507	4757124	0	-	0.52	(0.485,0.523]	chr10	454791	89	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	162	2	6.69488	6.71622	6.73756	0.00290687	1.13097e-4	0.0342042	0.0030016
chr12	6768008	6768103	5165696	0	+	0.568421	(0.523,0.58]	chr12	502315	9	INTRON	INTRON	PTMS	ENSG00000159335.18	ENST00000540667.5:ENST00000309083.8:ENST00000389462.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	168	2	6.40865	6.716155	7.02366	0.00155872	2.80789e-4	0.0243306	0.00578259
chr22	50424412	50424511	7754487	0	+	0.646465	(0.58,1]	chr22	812542	4	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9:ENST00000401672.7:ENST00000427222.2	protein_coding	protein_coding	protein_coding	protein_coding	0	156	2	6.56056	6.715719999999999	6.87088	0.00171861	2.92911e-5	0.025659	0.00110673
chr15	56179803	56179902	6274851	0	-	0.313131	(0.29,0.33]	chr15	618438	1	INTRON	INTRON	RFX7	ENSG00000181827.16	ENST00000674082.1:ENST00000559447.8:ENST00000673997.1:ENST00000673948.1:ENST00000560792.4	protein_coding	protein_coding	protein_coding	protein_coding	0	164	2	6.55461	6.715195	6.87578	0.00179434	2.0962e-4	0.0262815	0.00467341
chr3	188679488	188679588	1657066	0	+	0.47	(0.45,0.485]	chr3	173813	693	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000471917.1:ENST00000415906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	169	2	6.41491	6.7151	7.01529	0.00188703	0.00034885200000000003	0.0271069	0.00674746
chr8	128041364	128041462	3920295	0	+	0.418367	(0.39,0.419]	chr8	374321	11	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	2	525	2	5.7061	6.714765	7.72343	6.7492e-4	6.18407e-6	0.0153083	3.66346e-4
chr11	77665731	77665830	5083874	0	-	0.454545	(0.45,0.485]	chr11	494700	59	UTR3	UTR3:EXON_MRNA	RSF1	ENSG00000048649.14	ENST00000308488.11	protein_coding	protein_coding	protein_coding	protein_coding	1	368	2	5.33464	6.71455	8.09446	2.25105e-4	5.71193e-5	0.00847971	0.00180869
chr1	93454200	93454300	185674	0	+	0.47	(0.45,0.485]	chr1	20160	55	INTRON	INTRON	FNBP1L	ENSG00000137942.18	ENST00000271234.13:ENST00000260506.12:ENST00000370253.6	protein_coding	protein_coding	protein_coding	protein_coding	1	378	2	5.19585	6.71453	8.23321	1.6965e-4	8.71157e-5	0.00729569	0.00246932
chr10	18564662	18564762	4642375	0	-	0.4	(0.39,0.419]	chr10	443321	123	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	166	2	6.64309	6.714385	6.78568	0.00378521	2.66223e-4	0.0396337	0.00556524
chr2	233165223	233165323	1058278	0	+	0.42	(0.419,0.45]	chr2	115120	4	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493078.1:ENST00000472517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	167	2	6.46688	6.714105	6.96133	0.00757951	1.27315e-4	0.0579104	0.00327695
chr4	1807387	1807486	1995971	0	+	0.616162	(0.58,1]	chr4	203455	2	UTR3	UTR3:EXON_MRNA	FGFR3	ENSG00000068078.20	ENST00000412135.7:ENST00000440486.8:ENST00000481110.7:ENST00000340107.8	protein_coding	protein_coding	protein_coding	protein_coding	3	536	2	4.70949	6.712949999999999	8.71641	1.84306e-5	1.13869e-5	0.00197163	7.95515e-4
chr10	131957848	131957948	4616606	0	+	0.6	(0.58,1]	chr10	441116	20	UTR3	UTR3:EXON_MRNA	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	159	2	6.51182	6.7125900000000005	6.91336	7.98131e-4	9.48877e-5	0.0167692	0.00262417
chr6	16428663	16428763	3101119	0	-	0.56	(0.523,0.58]	chr6	300842	998	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8	protein_coding	protein_coding	protein_coding	protein_coding	0	162	2	6.66495	6.71256	6.76017	0.00258949	1.32802e-4	0.0321874	0.00337193
chr13	97346503	97346603	5632050	0	+	0.38	(0.36,0.39]	chr13	553195	3	SS3_PROX	SS3_PROX:INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	380	2	5.99612	6.712405	7.42869	0.00113746	1.06015e-5	0.0203659	5.36287e-4
chr11	9169455	9169555	4989860	0	-	0.32	(0.29,0.33]	chr11	482966	2	SS5_PROX	SS5_PROX:INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000679458.1:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000679926.1:ENST00000680252.1:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000527700.5:ENST00000526707.5:ENST00000681173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	165	2	6.49022	6.712199999999999	6.93418	0.00159876	2.52154e-4	0.0246878	0.00535512
chr16	89430655	89430755	6661140	0	-	0.5	(0.485,0.523]	chr16	666747	119	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	474	2	5.47371	6.71174	7.94977	2.37499e-4	6.94504e-6	0.0086821	3.9863e-4
chr8	17547780	17547879	3763513	0	+	0.383838	(0.36,0.39]	chr8	361508	28	INTRON	INTRON	SLC7A2	ENSG00000003989.18	ENST00000494857.6:ENST00000522656.5:ENST00000470360.5:ENST00000004531.14:ENST00000398090.3:ENST00000640220.1	protein_coding	protein_coding	protein_coding	protein_coding	0	178	2	6.22055	6.7116299999999995	7.20271	0.0017314	8.14665e-4	0.0257605	0.0123172
chr12	1698195	1698295	5155458	0	+	0.46	(0.45,0.485]	chr12	500946	66	INTRON	INTRON	ADIPOR2	ENSG00000006831.10	ENST00000537545.1:ENST00000357103.5:ENST00000540974.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	164	2	6.60832	6.7114899999999995	6.81466	0.00274987	2.02062e-4	0.0332418	0.00457229
chr16	978154	978253	6531820	0	-	0.474747	(0.45,0.485]	chr16	648726	73	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000545827.6:ENST00000570014.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	163	2	6.6866	6.711130000000001	6.73566	0.00318291	1.61391e-4	0.0360488	0.00387712
chr7	50561846	50561943	3591037	0	-	0.43299	(0.419,0.45]	chr7	346359	9	INTRON	INTRON	DDC	ENSG00000132437.18	ENST00000444124.7:ENST00000420203.1	protein_coding	protein_coding	protein_coding	protein_coding	0	166	2	6.69136	6.710885	6.73041	0.00486702	2.67131e-4	0.0456282	0.00557451
chr1	5868890	5868989	386502	0	-	0.535354	(0.523,0.58]	chr1	44370	6	INTRON	INTRON	NPHP4	ENSG00000131697.18	ENST00000378156.9:ENST00000478423.6:ENST00000489180.6:ENST00000378169.7:ENST00000468253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	161	2	6.57171	6.71008	6.84845	0.00369199	7.65992e-5	0.0389784	0.00224403
chr6	131847848	131847948	3008421	0	+	0.4	(0.39,0.419]	chr6	294183	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENPP1	ENSG00000197594.14	ENST00000486853.1:ENST00000647893.1:ENST00000513998.5:ENST00000650507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	495	2	5.17742	6.70993	8.24244	2.48455e-4	3.11753e-5	0.00891679	0.00115913
chr4	6665306	6665405	2186190	0	-	0.444444	(0.419,0.45]	chr4	221877	29	INTRON	INTRON	LINC02482	ENSG00000251580.3	ENST00000647523.2:ENST00000667300.1	lncRNA	lncRNA	lncRNA	lncRNA	0	166	2	6.50493	6.70967	6.91441	0.00711588	1.45031e-4	0.0560048	0.00359413
chr16	619257	619357	6368586	0	+	0.57	(0.523,0.58]	chr16	628044	6	INTRON	INTRON	RAB40C	ENSG00000197562.10	ENST00000535977.5:ENST00000569575.5:ENST00000539661.5:ENST00000566290.5:ENST00000248139.8:ENST00000568586.5:ENST00000538492.5:ENST00000565511.5:ENST00000509637.6:ENST00000563109.1:ENST00000564703.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	161	2	6.67755	6.70936	6.74117	0.00302793	1.05811e-4	0.0350226	0.00286061
chr10	132573142	132573242	4617192	0	+	0.52	(0.485,0.523]	chr10	441139	346	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	162	2	6.45793	6.709300000000001	6.96067	0.00452302	5.77936e-5	0.0436138	0.00182276
chr9	137780511	137780610	4266114	0	+	0.545455	(0.523,0.58]	chr9	407438	4	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	423	2	5.20367	6.708779999999999	8.21389	8.98847e-4	9.65082e-7	0.0178386	1.02583e-4
chr16	89426559	89426659	6661099	0	-	0.38	(0.36,0.39]	chr16	666747	78	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	368	2	5.68444	6.70867	7.7329	6.39502e-4	2.7267e-5	0.0148619	0.0010508
chr17	81074077	81074176	6813761	0	+	0.535354	(0.523,0.58]	chr17	688114	99	INTRON	INTRON	BAIAP2	ENSG00000175866.16	ENST00000321280.11:ENST00000576470.5:ENST00000575750.5:ENST00000428708.7:ENST00000572329.5:ENST00000575989.5:ENST00000570913.5:ENST00000575712.5:ENST00000575245.5:ENST00000321300.10:ENST00000435091.7:ENST00000573894.5:ENST00000571530.5:ENST00000572918.5:ENST00000573017.5:ENST00000575958.5:ENST00000573659.5:ENST00000572073.5:ENST00000573677.5:ENST00000574804.5:ENST00000576364.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	162	2	6.62527	6.708605	6.79194	0.00243746	1.49357e-4	0.0311222	0.00367368
chr10	132573042	132573142	4617191	0	+	0.48	(0.45,0.485]	chr10	441139	345	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	166	2	6.30338	6.707879999999999	7.11238	0.00692617	4.5955e-5	0.0553898	0.00154731
chr17	72920448	72920548	6967493	0	-	0.48	(0.45,0.485]	chr17	710518	703	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	166	2	6.30338	6.707879999999999	7.11238	0.00692617	4.5955e-5	0.0553898	0.00154731
chr20	3350122	3350222	7516289	0	-	0.51	(0.485,0.523]	chr20	784726	11	INTRON	INTRON	DNAAF9	ENSG00000088854.13	ENST00000252032.10	protein_coding	protein_coding	protein_coding	protein_coding	0	167	2	6.40505	6.7078500000000005	7.01065	0.00158449	2.98099e-4	0.0245893	0.00604717
chr9	124492084	124492173	4402644	0	-	0.696629	(0.58,1]	chr9	419811	5	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	1	324	2	5.67439	6.7076899999999995	7.74099	1.19833e-4	7.44242e-6	0.00607292	4.17372e-4
chr18	13261945	13262045	7023180	0	+	0.59	(0.58,1]	chr18	717514	426	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000590371.5:ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000590115.1:ENST00000677055.1:ENST00000399848.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	157	2	6.57822	6.707535	6.83685	9.44859e-4	7.66421e-5	0.0183873	0.00224403
chr2	3287616	3287716	1080983	0	-	0.56	(0.523,0.58]	chr2	117633	49	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	171	2	6.09961	6.70751	7.31541	0.00866655	1.80285e-5	0.0623824	7.82415e-4
chr12	49004742	49004841	5223291	0	+	0.484848	(0.45,0.485]	chr12	506970	57	INTRON	INTRON	DDN-AS1	ENSG00000257913.3	ENST00000552933.2:ENST00000547866.1:ENST00000552284.1:ENST00000547395.1	lncRNA	lncRNA	lncRNA	lncRNA	1	369	2	5.28283	6.707395	8.13196	2.08574e-4	6.69067e-5	0.00813372	0.00203052
chr2	101745928	101746028	861115	0	+	0.36	(0.33,0.36]	chr2	97528	470	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	0	166	2	6.51246	6.707155	6.90185	0.00244473	3.21298e-4	0.0311837	0.0063695
chr12	57111352	57111433	5439771	0	-	0.604938	(0.58,1]	chr12	535338	4	UTR5	UTR5:EXON_MRNA:INTRON	STAT6	ENSG00000166888.12	ENST00000300134.8:ENST00000553533.2:ENST00000554764.6:ENST00000556155.5:ENST00000537215.6:ENST00000454075.7:ENST00000640254.2:ENST00000553499.5:ENST00000553275.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	160	2	6.44222	6.706995	6.97177	7.01049e-4	1.18459e-4	0.0156107	0.00311099
chr14	75868941	75869041	5889496	0	+	0.49	(0.485,0.523]	chr14	575195	47	INTRON	INTRON	TTLL5	ENSG00000119685.20	ENST00000298832.14:ENST00000557636.5:ENST00000556893.5:ENST00000554510.5	protein_coding	protein_coding	protein_coding	protein_coding	0	163	2	6.56002	6.70695	6.85388	0.00214661	1.90696e-4	0.0291055	0.0043642
chr4	23795333	23795431	2208641	0	-	0.397959	(0.39,0.419]	chr4	223244	35	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PPARGC1A	ENSG00000109819.9	ENST00000509702.5:ENST00000264867.7:ENST00000613098.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	165	2	6.47475	6.70674	6.93873	0.00649594	1.16947e-4	0.0532359	0.00308693
chr22	40626889	40626989	7815560	0	-	0.36	(0.33,0.36]	chr22	819508	318	INTRON	INTRON	MRTFA	ENSG00000196588.21	ENST00000651595.2:ENST00000396617.7:ENST00000355630.10:ENST00000402042.7:ENST00000463769.7:ENST00000650658.1:ENST00000466278.1:ENST00000651158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	165	2	6.55444	6.7061399999999995	6.85784	0.00265287	2.86128e-4	0.0326475	0.00586813
chr11	496990	497086	4968416	0	-	0.59375	(0.58,1]	chr11	480490	16	INTRON	INTRON	RNH1	ENSG00000023191.17	ENST00000534797.5:ENST00000397614.5:ENST00000397604.7:ENST00000354420.7:ENST00000397615.6:ENST00000525522.5:ENST00000525701.5:ENST00000529768.5:ENST00000533410.5:ENST00000438658.6:ENST00000356187.9:ENST00000524464.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	333	2	6.10878	6.7058	7.30282	3.31884e-4	1.56696e-6	0.0103819	1.41032e-4
chr1	236844570	236844669	366311	0	+	0.494949	(0.485,0.523]	chr1	41482	56	INTRON	INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1:ENST00000681937.1:ENST00000366576.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	161	2	6.69995	6.705775	6.7116	0.00281636	1.26446e-4	0.0336649	0.00325863
chr8	133268816	133268915	4084007	0	-	0.484848	(0.45,0.485]	chr8	388324	13	INTRON	INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000517745.2:ENST00000676005.1:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674536.1:ENST00000675357.1:ENST00000675600.1:ENST00000674902.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	1421	2	6.38654	6.70561	7.02468	5.97847e-5	2.24457e-5	0.00273967	0.00186524
chr19	47228746	47228846	7392369	0	-	0.57	(0.523,0.58]	chr19	768105	3	SS3_PROX	SS3_PROX:INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	1	422	2	5.20367	6.70543	8.20719	8.98847e-4	9.86927e-7	0.0178386	1.04311e-4
chr10	18572357	18572457	4642452	0	-	0.4	(0.39,0.419]	chr10	443321	200	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	164	2	6.63858	6.7054100000000005	6.77224	0.00489861	1.86459e-4	0.0457614	0.00431276
chr3	128348261	128348360	1562581	0	+	0.434343	(0.419,0.45]	chr3	165315	60	INTRON	INTRON	EEFSEC	ENSG00000132394.11	ENST00000254730.11:ENST00000483457.1	protein_coding	protein_coding	protein_coding	protein_coding	0	165	2	6.66471	6.705345	6.74598	0.00544202	2.30334e-4	0.0486855	0.00498593
chr13	33262660	33262760	5685224	0	-	0.46	(0.45,0.485]	chr13	558196	568	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	435	2	5.40675	6.70534	8.00393	6.88094e-4	2.85881e-6	0.0154438	2.12727e-4
chrX	78122434	78122534	7912477	0	+	0.42	(0.419,0.45]	chrX	828894	2	SS3_PROX	SS3_PROX:INTRON	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000491291.1:ENST00000373316.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	827	2	5.85971	6.703635	7.54756	1.83851e-4	2.38821e-5	0.00764457	9.56571e-4
chr4	98917021	98917121	2288111	0	-	0.36	(0.33,0.36]	chr4	230116	67	INTRON	INTRON	EIF4E	ENSG00000151247.13	ENST00000450253.7:ENST00000280892.10:ENST00000515638.5:ENST00000504432.5:ENST00000511644.5:ENST00000505992.1:ENST00000507665.5:ENST00000504472.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	380	2	6.11479	6.703385	7.29198	0.0011683	6.13344e-6	0.0206836	3.64245e-4
chr13	113058595	113058695	5656223	0	+	0.56	(0.523,0.58]	chr13	555189	38	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	1	356	2	5.36784	6.702975	8.03811	1.99936e-4	4.18946e-5	0.00798199	0.00145043
chr10	18571657	18571757	4642445	0	-	0.41	(0.39,0.419]	chr10	443321	193	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	164	2	6.69986	6.70284	6.70582	0.00435618	2.27791e-4	0.0427656	0.00496195
chr10	79218573	79218673	4533547	0	+	0.43	(0.419,0.45]	chr10	432457	19	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	378	2	5.35158	6.7027	8.05382	4.48848e-4	8.24923e-5	0.0121771	0.00236784
chr1	5879919	5880013	386625	0	-	0.585106	(0.58,1]	chr1	44406	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NPHP4	ENSG00000131697.18	ENST00000378156.9:ENST00000478423.6:ENST00000489180.6:ENST00000378169.7:ENST00000470763.1:ENST00000622020.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	160	2	6.21852	6.702655	7.18679	0.00350812	1.00244e-5	0.0379357	5.13591e-4
chr11	63871767	63871866	4867131	0	+	0.50505	(0.485,0.523]	chr11	466776	20	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5:ENST00000543674.1:ENST00000540169.5	protein_coding	protein_coding	protein_coding	protein_coding	1	424	2	5.06066	6.70247	8.34428	0.00119311	6.82079e-7	0.020937	8.14739e-5
chr6	34587783	34587882	3124183	0	-	0.535354	(0.523,0.58]	chr6	304700	6	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	1	357	2	5.34704	6.702445	8.05785	1.91871e-4	4.47356e-5	0.00780212	0.00151628
chr13	113032977	113033075	5655959	0	+	0.632653	(0.58,1]	chr13	555157	61	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486806.1:ENST00000473345.5	protein_coding	protein_coding	protein_coding	protein_coding	0	156	2	6.59969	6.70238	6.80507	0.00101308	7.15008e-5	0.0191342	0.00213784
chrX	2234024	2234124	7966178	0	-	0.53	(0.523,0.58]	chrX	834328	124	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11	protein_coding	protein_coding	protein_coding	protein_coding	1	370	2	5.16888	6.70237	8.23586	1.32121e-4	7.81032e-5	0.00637826	0.00227541
chr12	28491864	28491964	5197621	0	+	0.44	(0.419,0.45]	chr12	505492	73	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000535520.5:ENST00000539107.5:ENST00000545336.5:ENST00000536442.6:ENST00000543809.5:ENST00000381259.5:ENST00000540401.5:ENST00000542801.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	166	2	6.42781	6.702225	6.97664	0.0080847	1.22002e-4	0.0602118	0.00318856
chr10	50429675	50429775	4688742	0	-	0.36	(0.33,0.36]	chr10	447053	113	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	163	2	6.48602	6.7021049999999995	6.91819	0.00521233	1.02287e-4	0.0475559	0.00278018
chr16	78954218	78954318	6503961	0	+	0.48	(0.45,0.485]	chr16	645717	1739	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	177	2	5.98601	6.701980000000001	7.41795	0.0119228	1.809e-5	0.0741726	7.83029e-4
chr19	49796783	49796880	7283450	0	+	0.484536	(0.45,0.485]	chr19	748939	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	AP2A1	ENSG00000196961.13	ENST00000354293.10:ENST00000600199.1:ENST00000359032.9:ENST00000597774.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	163	2	6.40899	6.7016100000000005	6.99423	0.00574958	6.5472e-5	0.0499659	0.00199814
chr15	28217293	28217392	6207144	0	-	0.50505	(0.485,0.523]	chr15	611111	11	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	1	424	2	5.3935	6.701595000000001	8.00969	6.04701e-4	2.06548e-6	0.014437	1.7021e-4
chr2	235999110	235999210	1067607	0	+	0.47	(0.45,0.485]	chr2	115748	301	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5:ENST00000418654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	163	2	6.58806	6.701359999999999	6.81466	0.00274987	2.14087e-4	0.0332418	0.00475596
chr4	140737448	140737548	2330002	0	-	0.45	(0.419,0.45]	chr4	234026	355	INTRON	INTRON	TBC1D9	ENSG00000109436.8	ENST00000442267.3	protein_coding	protein_coding	protein_coding	protein_coding	0	171	2	6.38214	6.701255	7.02037	0.00294696	6.07209e-4	0.0344907	0.0100293
chr1	161223050	161223099	607255	0	-	0.510204	(0.485,0.523]	chr1	72272	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	APOA2	ENSG00000158874.11	ENST00000463812.1:ENST00000468465.5:ENST00000367990.7:ENST00000481413.1:ENST00000481511.5:ENST00000470459.6:ENST00000464492.5:ENST00000491350.1:ENST00000463273.5:ENST00000469730.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	3334	2	6.15393	6.701135	7.24834	2.57943e-6	1.3202e-7	0.00111692	2.7946e-5
chr19	437371	437465	7303561	0	-	0.531915	(0.523,0.58]	chr19	752509	3	INTRON	INTRON	SHC2	ENSG00000129946.11	ENST00000264554.11:ENST00000590222.5:ENST00000590113.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	176	2	5.96674	6.7008600000000005	7.43498	0.0109075	1.23313e-5	0.0707085	5.95111e-4
chr6	52678262	52678360	2926962	0	+	0.459184	(0.45,0.485]	chr6	288209	7	INTRON	INTRON	TMEM14A	ENSG00000096092.6	ENST00000211314.5	protein_coding	protein_coding	protein_coding	protein_coding	0	164	2	6.52554	6.70021	6.87488	0.00245783	2.5568e-4	0.0312836	0.00541562
chr10	92692184	92692275	4550924	0	+	0.549451	(0.523,0.58]	chr10	434378	5	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HHEX	ENSG00000152804.11	ENST00000282728.10:ENST00000551454.1:ENST00000472590.6:ENST00000492654.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	468	2	5.06862	6.699725000000001	8.33083	1.08149e-4	2.47054e-5	0.00581149	9.80429e-4
chr11	117809787	117809887	5134981	0	-	0.46	(0.45,0.485]	chr11	498595	74	INTRON	INTRON	FXYD2	ENSG00000137731.14	ENST00000514385.1:ENST00000532119.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	354	2	5.7012	6.698535	7.69587	5.02031e-4	1.83245e-5	0.0129939	7.92358e-4
chr16	89304705	89304803	6659856	0	-	0.591837	(0.58,1]	chr16	666659	1	SS5_PROX	SS5_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	2170	2	5.91978	6.698515	7.47725	1.74599e-6	3.47212e-8	9.85957e-4	1.17394e-5
chr1	174838958	174839058	284810	0	+	0.4	(0.39,0.419]	chr1	32787	266	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000251507.8:ENST00000681986.1:ENST00000529145.6:ENST00000325589.9:ENST00000469553.6:ENST00000367687.5:ENST00000347255.6:ENST00000489615.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	168	2	6.43589	6.69847	6.96105	0.00276944	4.66094e-4	0.0332691	0.00828434
chr5	59656178	59656278	2670700	0	-	0.36	(0.33,0.36]	chr5	264360	698	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000507116.5:ENST00000502484.6:ENST00000309641.10:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	162	2	6.66697	6.698255	6.72954	0.00376513	1.75295e-4	0.0395491	0.00411175
chr15	74416182	74416279	6319061	0	-	0.618557	(0.58,1]	chr15	623108	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SEMA7A	ENSG00000138623.10	ENST00000261918.9:ENST00000542748.6:ENST00000543145.6	protein_coding	protein_coding	protein_coding	protein_coding	0	154	2	6.56056	6.697839999999999	6.83512	0.00171861	3.30003e-5	0.025659	0.00120982
chrX	101048052	101048151	8082921	0	-	0.383838	(0.36,0.39]	chrX	842888	40	INTRON	INTRON	TRMT2B:TRMT2B-AS1	ENSG00000188917.15:ENSG00000225839.2	ENST00000545398.5:ENST00000372936.4:ENST00000372939.5:ENST00000372935.5:ENST00000478422.1:ENST00000443801.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	163	2	6.62264	6.697725	6.77281	0.00490832	1.84422e-4	0.0457614	0.00427863
chr22	20124527	20124625	7686888	0	+	0.632653	(0.58,1]	chr22	804214	5	EXON_MRNA	EXON_MRNA:INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000331821.7:ENST00000411892.5:ENST00000423859.5:ENST00000418705.2:ENST00000448394.2:ENST00000486575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	157	2	6.51182	6.69753	6.88324	8.53086e-4	9.48877e-5	0.0173632	0.00262417
chr6	20694047	20694147	2865537	0	+	0.42	(0.419,0.45]	chr6	279716	443	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	164	2	6.59587	6.697235	6.7986	0.00611222	1.99513e-4	0.0517172	0.00452558
chr17	38728396	38728495	6729367	0	+	0.545455	(0.523,0.58]	chr17	676371	29	UTR3	UTR3:EXON_MRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5	protein_coding	protein_coding	protein_coding	protein_coding	12	1087	2	3.85444	6.697115	9.53979	1.03254e-4	8.02608e-6	0.00280222	0.00171585
chr20	13442250	13442350	7525976	0	-	0.5	(0.485,0.523]	chr20	785591	67	INTRON	INTRON	TASP1	ENSG00000089123.16	ENST00000480436.5:ENST00000337743.9:ENST00000465381.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	161	2	6.6014	6.696885	6.79237	0.00241519	1.68998e-4	0.0309229	0.0040111
chr15	20441441	20441541	6202461	0	-	0.47	(0.45,0.485]	chr15	610287	4	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000424611.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	165	2	6.2813	6.69684	7.11238	0.00719875	4.5955e-5	0.056408	0.00154731
chr4	163117654	163117753	2358954	0	-	0.40404	(0.39,0.419]	chr4	235660	70	INTRON	INTRON	NAF1	ENSG00000145414.9	ENST00000509434.5	protein_coding	protein_coding	protein_coding	protein_coding	0	163	2	6.60375	6.696765	6.78978	0.00520388	1.77584e-4	0.0475031	0.00415615
chr8	39022014	39022114	3804127	0	+	0.41	(0.39,0.419]	chr8	366053	3	SS5_PROX	SS5_PROX:INTRON	ADAM9	ENSG00000168615.13	ENST00000678474.1:ENST00000676765.1:ENST00000676936.1:ENST00000677908.1:ENST00000677004.1:ENST00000677165.1:ENST00000481058.2:ENST00000676643.1:ENST00000676669.1:ENST00000679268.1:ENST00000677582.1:ENST00000676617.1:ENST00000677137.1:ENST00000678540.1:ENST00000677359.1:ENST00000678730.1:ENST00000487273.7:ENST00000678253.1:ENST00000676489.1:ENST00000379917.7:ENST00000468065.5:ENST00000481873.7:ENST00000676919.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	163	2	6.62127	6.696755	6.77224	0.00504817	1.86459e-4	0.0465263	0.00431276
chr3	38208922	38209022	1445003	0	+	0.52	(0.485,0.523]	chr3	154076	97	INTRON	INTRON	OXSR1	ENSG00000172939.9	ENST00000446845.5:ENST00000311806.8:ENST00000426620.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	173	2	6.2048	6.69656	7.18832	0.00111738	5.23665e-4	0.0202011	0.0090184
chr17	642598	642697	6823602	0	-	0.474747	(0.45,0.485]	chr17	689804	94	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000680944.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000681830.1:ENST00000679959.1:ENST00000680114.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000570650.2:ENST00000679680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	162	2	6.42921	6.696160000000001	6.96311	0.00554658	7.18212e-5	0.0492398	0.00214399
chr1	11023822	11023921	27800	0	+	0.515152	(0.485,0.523]	chr1	3255	6	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000639599.1:ENST00000240185.8:ENST00000614757.4:ENST00000473869.5:ENST00000315091.7:ENST00000611963.4:ENST00000619555.4:ENST00000620632.4:ENST00000610369.4:ENST00000614494.1:ENST00000611136.4:ENST00000477447.6:ENST00000612542.1:ENST00000620505.1:ENST00000621573.1:ENST00000611008.4:ENST00000613177.1:ENST00000622108.1:ENST00000496840.1:ENST00000617757.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	351	2	5.89348	6.6960750000000004	7.49867	5.99913e-4	8.14489e-6	0.0143535	4.44124e-4
chr6	43533155	43533253	3136609	0	-	0.377551	(0.36,0.39]	chr6	306236	12	INTRON	INTRON	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000398835.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	168	2	6.24677	6.69548	7.14419	0.00931845	6.43862e-5	0.0649153	0.00197217
chr22	35850083	35850182	7804039	0	-	0.515152	(0.485,0.523]	chr22	817785	96	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000359369.8:ENST00000695807.1:ENST00000408983.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	347	2	5.62006	6.6950199999999995	7.76998	3.44588e-4	1.96821e-5	0.0106222	8.29491e-4
chr16	75235986	75236072	6644467	0	-	0.639535	(0.58,1]	chr16	664410	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000566982.1:ENST00000563038.5:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10:ENST00000569340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	382	2	5.39782	6.694875	7.99193	2.83991e-4	5.74805e-7	0.00957277	7.27477e-5
chr8	22560639	22560736	3771899	0	+	0.505155	(0.485,0.523]	chr8	362926	21	INTRON	INTRON	SORBS3	ENSG00000120896.14	ENST00000240123.12:ENST00000517500.5:ENST00000517535.5:ENST00000523402.5:ENST00000520563.3:ENST00000524057.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	180	2	6.06388	6.6944	7.32492	8.51269e-4	7.70737e-4	0.0173632	0.0118331
chr20	62958080	62958176	7508277	0	+	0.5625	(0.523,0.58]	chr20	783180	1	INTRON	INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	2090	2	5.26346	6.694295	8.12513	1.09698e-4	3.7698e-9	0.0058454	2.87783e-6
chr16	87917564	87917663	6657541	0	-	0.484848	(0.45,0.485]	chr16	666059	123	INTRON	INTRON	CA5A	ENSG00000174990.8	ENST00000649158.1:ENST00000648177.1:ENST00000649794.3:ENST00000648022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	972	2	6.6663	6.69428	6.72226	4.56726e-5	8.17097e-7	0.00373545	9.1976e-5
chr8	699696	699796	3932726	0	-	0.66	(0.58,1]	chr8	376054	67	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000524138.5:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	154	2	6.68251	6.69391	6.70531	0.00125905	5.46055e-5	0.0215793	0.00175188
chr18	6139394	6139494	7111109	0	-	0.46	(0.45,0.485]	chr18	723852	7	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000400105.6:ENST00000317931.12:ENST00000400104.7	protein_coding	protein_coding	protein_coding	protein_coding	0	172	2	6.24422	6.693725000000001	7.14323	0.00147887	5.58345e-4	0.023604	0.00944382
chr7	127953113	127953213	3471258	0	+	0.54	(0.523,0.58]	chr7	335423	35	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	159	2	6.5899	6.692855	6.79581	0.00356891	8.98003e-5	0.0383188	0.00252158
chr7	128593217	128593317	3473807	0	+	0.54	(0.523,0.58]	chr7	335610	8	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	0	159	2	6.5899	6.692855	6.79581	0.00356891	8.98003e-5	0.0383188	0.00252158
chr12	46757333	46757433	5220768	0	+	0.37	(0.36,0.39]	chr12	506670	1049	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2	lncRNA	lncRNA	lncRNA	lncRNA	0	165	2	6.52295	6.69284	6.86273	0.0032112	3.65857e-4	0.0362232	0.00700609
chr8	80510625	80510724	3848430	0	+	0.424242	(0.419,0.45]	chr8	369339	99	INTRON	INTRON	ZBTB10	ENSG00000205189.12	ENST00000379091.8:ENST00000430430.5:ENST00000426744.5:ENST00000455036.8:ENST00000610895.2	protein_coding	protein_coding	protein_coding	protein_coding	0	169	2	6.40495	6.692685	6.98042	0.00316046	5.72149e-4	0.0359603	0.00960229
chr8	629637	629737	3932016	0	-	0.61	(0.58,1]	chr8	376005	20	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	158	2	6.44222	6.692539999999999	6.94286	7.47593e-4	1.18459e-4	0.0161372	0.00311099
chr16	89426459	89426559	6661098	0	-	0.47	(0.45,0.485]	chr16	666747	77	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	367	2	6.06861	6.692354999999999	7.3161	0.0010596	5.70491e-6	0.0195612	3.47144e-4
chr19	37218602	37218688	7252058	0	+	0.430233	(0.419,0.45]	chr19	743295	3	SS5_PROX	SS5_PROX:INTRON	ZNF383	ENSG00000188283.12	ENST00000586068.5:ENST00000585441.5:ENST00000586658.1:ENST00000590503.5:ENST00000684119.1:ENST00000589413.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	165	2	6.40787	6.692254999999999	6.97664	0.00835435	1.22002e-4	0.0613588	0.00318856
chr3	172091781	172091880	1627985	0	+	0.393939	(0.39,0.419]	chr3	170535	445	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	1347	2	6.36268	6.69191	7.02114	3.62436e-5	7.89349e-7	0.0033207	8.99135e-5
chr12	50642946	50643046	5230839	0	+	0.52	(0.485,0.523]	chr12	507719	17	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5:ENST00000546719.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	161	2	6.56002	6.6917349999999995	6.82345	0.00227572	1.90696e-4	0.0301405	0.0043642
chr18	79358255	79358355	7099868	0	+	0.67	(0.58,1]	chr18	722963	97	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000426216.6:ENST00000307671.12:ENST00000490210.6:ENST00000590477.5:ENST00000589951.5:ENST00000588921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	324	2	5.50529	6.6912	7.87711	8.68304e-5	1.34801e-5	0.00518123	6.36828e-4
chr10	132755872	132755972	4619031	0	+	0.54	(0.523,0.58]	chr10	441201	20	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	0	163	2	6.2672	6.69117	7.11514	0.00644151	3.37828e-5	0.0530091	0.00122993
chr5	73783636	73783736	2453270	0	+	0.52	(0.485,0.523]	chr5	244950	25	INTRON	INTRON	ARHGEF28	ENSG00000214944.10	ENST00000545377.5:ENST00000296794.10:ENST00000513042.7:ENST00000426542.6:ENST00000437974.5	protein_coding	protein_coding	protein_coding	protein_coding	0	159	2	6.62603	6.691015	6.756	0.00330946	1.07056e-4	0.0368376	0.00288045
chr20	32476231	32476330	7543630	0	-	0.535354	(0.523,0.58]	chr20	787372	11	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	197	2	5.80873	6.691005	7.57328	0.00145893	5.21034e-4	0.0184991	0.0132625
chr10	18565162	18565262	4642380	0	-	0.4	(0.39,0.419]	chr10	443321	128	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	163	2	6.64309	6.69069	6.73829	0.00411485	2.66223e-4	0.0414433	0.00556524
chr13	97338926	97339026	5631973	0	+	0.47	(0.45,0.485]	chr13	553188	41	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	445	2	4.77395	6.690614999999999	8.60728	0.00238913	4.03104e-7	0.0308863	5.75541e-5
chr8	629937	630037	3932019	0	-	0.58	(0.523,0.58]	chr8	376005	23	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	160	2	6.60501	6.690575	6.77614	0.00251197	1.58554e-4	0.031696	0.00384084
chr11	96295588	96295688	5113092	0	-	0.32	(0.29,0.33]	chr11	496566	2017	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	1	374	2	5.09232	6.690519999999999	8.28872	1.09069e-4	9.52399e-5	0.00545658	0.00292756
chr2	200360852	200360952	986501	0	+	0.53	(0.523,0.58]	chr2	108296	92	INTRON	INTRON	SPATS2L	ENSG00000196141.14	ENST00000439084.5:ENST00000409718.5:ENST00000358677.9:ENST00000409988.7:ENST00000409385.5:ENST00000439395.5:ENST00000444012.5:ENST00000451764.6:ENST00000360760.9:ENST00000423749.5:ENST00000457757.5:ENST00000471601.5:ENST00000428692.5:ENST00000453663.5:ENST00000409140.8:ENST00000459656.5:ENST00000471533.5:ENST00000409397.6:ENST00000619961.4:ENST00000409151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	347	2	5.49618	6.690345	7.88451	2.75108e-4	2.78788e-5	0.00943643	0.00106752
chr6	13590498	13590594	2855852	0	+	0.385417	(0.36,0.39]	chr6	279046	11	INTRON	INTRON	SIRT5	ENSG00000124523.17	ENST00000680432.1:ENST00000681012.1:ENST00000397350.7:ENST00000680442.1:ENST00000680754.1:ENST00000679658.1:ENST00000681243.1:ENST00000680747.1:ENST00000681818.1:ENST00000680402.1:ENST00000679663.1:ENST00000379250.10:ENST00000680852.1:ENST00000679922.1:ENST00000681231.1:ENST00000359782.8:ENST00000606117.2:ENST00000379262.8:ENST00000681905.1:ENST00000680937.1:ENST00000680151.1:ENST00000680707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	166	2	6.29128	6.689920000000001	7.08856	0.0086512	7.55582e-5	0.0623824	0.00222665
chr2	230773308	230773408	1046847	0	+	0.34	(0.33,0.36]	chr2	113948	128	INTRON	INTRON	CAB39	ENSG00000135932.12	ENST00000258418.10:ENST00000409788.7:ENST00000410084.7	protein_coding	protein_coding	protein_coding	protein_coding	0	161	2	6.56114	6.68975	6.81836	0.00455773	1.36209e-4	0.0438198	0.00344204
chr7	2279203	2279303	3532968	0	-	0.61	(0.58,1]	chr7	341203	5	INTRON	INTRON	SNX8	ENSG00000106266.11	ENST00000222990.8:ENST00000435060.5:ENST00000457286.5:ENST00000435336.5:ENST00000494722.1:ENST00000447136.1:ENST00000419693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	153	2	6.57947	6.68896	6.79845	0.00165065	3.72743e-5	0.0250898	0.00131851
chr10	18570858	18570958	4642437	0	-	0.38	(0.36,0.39]	chr10	443321	185	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	164	2	6.54378	6.688359999999999	6.83294	0.00338675	3.45814e-4	0.0372054	0.00672667
chr10	119360450	119360550	4594852	0	+	0.61	(0.58,1]	chr10	439173	335	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	153	2	6.63475	6.688195	6.74164	0.00146621	4.4971e-5	0.023492	0.00152119
chr7	158916383	158916481	3523153	0	+	0.428571	(0.419,0.45]	chr7	340293	17	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	163	2	6.56018	6.6879550000000005	6.81573	0.00648928	1.90368e-4	0.0532359	0.0043642
chr22	25456674	25456758	7701107	0	+	0.404762	(0.39,0.419]	chr22	805959	5	INTRON	INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000382734.10:ENST00000686640.1:ENST00000509460.3:ENST00000415709.6:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	172	2	6.27083	6.6879100000000005	7.10499	0.00213479	7.20415e-4	0.0290686	0.0112959
chr9	134369375	134369474	4261117	0	+	0.525253	(0.523,0.58]	chr9	406311	424	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	167	2	6.312	6.687625000000001	7.06325	0.0014427	3.69994e-4	0.023287	0.00704866
chr20	8492438	8492538	7430192	0	+	0.34	(0.33,0.36]	chr20	773698	1204	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	161	2	6.6735	6.68704	6.70058	0.00354175	2.05279e-4	0.0382067	0.00461335
chr13	113033371	113033471	5655963	0	+	0.69	(0.58,1]	chr13	555158	1	SS3_PROX	SS3_PROX:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486806.1:ENST00000473345.5	protein_coding	protein_coding	protein_coding	protein_coding	0	162	2	6.29206	6.687005	7.08195	5.47872e-4	1.89825e-4	0.0136476	0.0043642
chr4	177435975	177436075	2365539	0	-	0.5	(0.485,0.523]	chr4	236153	3	SS5_PROX	SS5_PROX:INTRON	AGA	ENSG00000038002.9	ENST00000264595.7:ENST00000502310.5:ENST00000506853.5:ENST00000510635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	160	2	6.39724	6.686859999999999	6.97648	0.00505512	5.50755e-5	0.0465263	0.00176017
chr8	143323308	143323403	4095561	0	-	0.631579	(0.58,1]	chr8	389125	16	INTRON	INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	153	2	6.5023	6.68659	6.87088	0.00194503	2.92911e-5	0.0275844	0.00110673
chr18	74915720	74915820	7092439	0	+	0.48	(0.45,0.485]	chr18	722466	99	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	160	2	6.6861	6.68635	6.6866	0.00348661	1.61391e-4	0.0379065	0.00387712
chr9	93618869	93618969	4184078	0	+	0.48	(0.45,0.485]	chr9	397705	416	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	161	2	6.40899	6.68605	6.96311	0.00574958	7.18212e-5	0.0499659	0.00214399
chr2	120277214	120277314	887944	0	+	0.47	(0.45,0.485]	chr2	100428	231	INTRON	INTRON	RALB	ENSG00000144118.14	ENST00000447591.5:ENST00000420510.5:ENST00000431732.5:ENST00000272519.10:ENST00000631312.2:ENST00000470417.1:ENST00000412383.5:ENST00000449649.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	182	2	5.84258	6.6854700000000005	7.52836	0.0151085	1.28462e-5	0.0841543	6.14919e-4
chr21	43727742	43727840	7623871	0	+	0.602041	(0.58,1]	chr21	796696	40	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000438837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	153	2	6.68251	6.68525	6.68799	0.00130716	5.46055e-5	0.0220198	0.00175188
chr10	18570058	18570158	4642429	0	-	0.41	(0.39,0.419]	chr10	443321	177	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	162	2	6.68119	6.685245	6.6893	0.00448396	2.39806e-4	0.0436138	0.00516473
chr22	40582645	40582745	7815116	0	-	0.4	(0.39,0.419]	chr22	819498	299	INTRON	INTRON	MRTFA	ENSG00000196588.21	ENST00000651595.2:ENST00000396617.7:ENST00000355630.10:ENST00000402042.7:ENST00000463769.7:ENST00000650658.1:ENST00000466278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	162	2	6.68119	6.685245	6.6893	0.00448396	2.39806e-4	0.0436138	0.00516473
chr14	24918392	24918492	5943310	0	-	0.4	(0.39,0.419]	chr14	582927	392	INTRON	INTRON	STXBP6	ENSG00000168952.16	ENST00000323944.10:ENST00000396700.5:ENST00000419632.6:ENST00000546511.5:ENST00000550887.5:ENST00000548182.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	163	2	6.584	6.6848399999999994	6.78568	0.00378521	3.12789e-4	0.0396337	0.00625974
chr1	52912089	52912157	485546	0	-	0.411765	(0.39,0.419]	chr1	57713	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ECHDC2	ENSG00000121310.17	ENST00000536120.5:ENST00000371522.9:ENST00000460612.5:ENST00000371520.5:ENST00000358358.9:ENST00000476477.6:ENST00000479593.5:ENST00000467988.2:ENST00000487866.5:ENST00000487851.5:ENST00000488268.5:ENST00000544365.5:ENST00000495920.5:ENST00000544531.5:ENST00000480312.6:ENST00000493896.2:ENST00000487040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	192	2	5.90288	6.684749999999999	7.46662	0.00183094	0.00109526	0.0216571	0.0199429
chr14	89204734	89204834	6026142	0	-	0.41	(0.39,0.419]	chr14	591423	139	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000555010.1:ENST00000557718.5:ENST00000553353.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	443	2	5.34424	6.6844149999999996	8.02459	9.92266e-4	4.74231e-6	0.0189541	3.03873e-4
chr15	49010071	49010167	6252879	0	-	0.5625	(0.523,0.58]	chr15	615980	3	INTRON	INTRON	SECISBP2L	ENSG00000138593.9	ENST00000559471.6:ENST00000261847.7:ENST00000380927.6	protein_coding	protein_coding	protein_coding	protein_coding	0	164	2	6.38509	6.68402	6.98295	0.00168728	3.00426e-4	0.0254298	0.00607383
chr10	18569059	18569159	4642419	0	-	0.42	(0.419,0.45]	chr10	443321	167	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	163	2	6.65377	6.6840150000000005	6.71426	0.0050028	2.95666e-4	0.0463896	0.00601525
chr17	2679701	2679793	6667327	0	+	0.358696	(0.33,0.36]	chr17	667991	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000397195.10:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000397193.7:ENST00000574468.1:ENST00000571495.2:ENST00000675574.1:ENST00000675385.1:ENST00000675084.1:ENST00000610190.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	162	2	6.38626	6.6836850000000005	6.98111	0.00621741	8.52689e-5	0.052147	0.00243134
chr17	81138898	81138998	6982891	0	-	0.61	(0.58,1]	chr17	713268	40	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	320	2	5.56726	6.682930000000001	7.7986	1.0459e-4	1.08528e-5	0.00570277	5.4604e-4
chr9	124654907	124655007	4404194	0	-	0.37	(0.36,0.39]	chr9	419893	592	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	2	490	2	4.98153	6.682755	8.38398	1.80626e-4	5.56603e-5	0.00757761	0.00177481
chr7	143386293	143386390	3510768	0	+	0.56701	(0.523,0.58]	chr7	338486	17	INTRON	INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	160	2	6.54248	6.68275	6.82302	0.00229691	1.90498e-4	0.0302623	0.0043642
chr16	85399032	85399132	6517061	0	+	0.4	(0.39,0.419]	chr16	646391	397	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	167	2	6.39063	6.68269	6.97475	0.00270208	5.25726e-4	0.033007	0.00903907
chr9	120433793	120433893	4384258	0	-	0.45	(0.419,0.45]	chr9	418299	107	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000479584.2:ENST00000690814.1:ENST00000686842.1:ENST00000691551.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000425647.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	163	2	6.46688	6.68265	6.89842	0.00757951	1.51593e-4	0.0579104	0.00370696
chr16	20684775	20684875	6416306	0	+	0.35	(0.33,0.36]	chr16	634386	27	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	688	2	5.19863	6.682455	8.16628	2.07417e-4	7.49042e-6	0.00813372	4.19328e-4
chr9	34226035	34226135	4141200	0	+	0.4	(0.39,0.419]	chr9	393829	47	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2:ENST00000359544.2	protein_coding	protein_coding	protein_coding	protein_coding	0	163	2	6.56375	6.6824449999999995	6.80114	0.00368319	3.30465e-4	0.0389784	0.00649658
chr20	3492096	3492196	7419772	0	+	0.45	(0.419,0.45]	chr20	772906	202	INTRON	INTRON	ATRN	ENSG00000088812.18	ENST00000262919.10:ENST00000446916.2	protein_coding	protein_coding	protein_coding	protein_coding	1	374	2	5.3042	6.6822099999999995	8.06022	4.43488e-4	9.45486e-5	0.0121128	0.00262417
chr2	152593843	152593943	928057	0	+	0.5	(0.485,0.523]	chr2	103106	124	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14:ENST00000492942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	344	2	5.59402	6.682	7.76998	3.44588e-4	2.13896e-5	0.0106222	8.81763e-4
chr7	78991311	78991411	3621905	0	-	0.33	(0.29,0.33]	chr7	349212	440	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000440555.2:ENST00000636989.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	160	2	6.53346	6.681915	6.83037	0.0019619	2.22768e-4	0.0277531	0.00489571
chr16	53979499	53979597	6460313	0	+	0.438776	(0.419,0.45]	chr16	640610	1	INTRON	INTRON	FTO	ENSG00000140718.21	ENST00000636491.1:ENST00000471389.6:ENST00000636992.1:ENST00000637969.1:ENST00000637845.1:ENST00000637562.1:ENST00000464071.1:ENST00000563011.2:ENST00000612285.2:ENST00000431610.6:ENST00000460382.5:ENST00000463855.1:ENST00000635892.1:ENST00000268349.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	164	2	6.55525	6.681895	6.80854	0.00425752	3.84925e-4	0.0422596	0.00726694
chr6	2491365	2491465	2826856	0	+	0.48	(0.45,0.485]	chr6	277337	19	INTRON	INTRON	GMDS-DT	ENSG00000250903.10	ENST00000659523.1	lncRNA	lncRNA	lncRNA	lncRNA	0	178	2	6.0799	6.681525000000001	7.28315	0.00112952	8.68466e-4	0.0202727	0.0128564
chr3	172164458	172164558	1628718	0	+	0.34	(0.33,0.36]	chr3	170559	155	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	160	2	6.57933	6.68141	6.78349	0.00441125	1.50436e-4	0.0430586	0.00368673
chr15	63581350	63581449	6129479	0	+	0.515152	(0.485,0.523]	chr15	603006	66	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000558157.5:ENST00000559873.5:ENST00000559192.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6:ENST00000559711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	158	2	6.64355	6.681215	6.71888	0.00320229	1.19549e-4	0.0361639	0.00313373
chr6	158544142	158544242	3063734	0	+	0.51	(0.485,0.523]	chr6	297682	69	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4	protein_coding	protein_coding	protein_coding	protein_coding	1	415	2	5.21279	6.680785	8.14878	8.76083e-4	1.30586e-6	0.0176739	1.25036e-4
chr8	143323798	143323898	4095566	0	-	0.55	(0.523,0.58]	chr8	389126	4	SS5_PROX	SS5_PROX:INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	159	2	6.39681	6.68055	6.96429	0.00509616	5.38186e-5	0.0467496	0.0017322
chr1	214460542	214460642	659020	0	-	0.43	(0.419,0.45]	chr1	77693	82	INTRON	INTRON	PTPN14	ENSG00000152104.12	ENST00000366956.10:ENST00000543945.5	protein_coding	protein_coding	protein_coding	protein_coding	0	165	2	6.49275	6.680445000000001	6.86814	0.00384173	4.54324e-4	0.0399957	0.00818426
chr18	13590437	13590536	7026497	0	+	0.555556	(0.523,0.58]	chr18	717646	46	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000677744.1:ENST00000593236.1:ENST00000678400.1:ENST00000586207.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	165	2	6.33678	6.68022	7.02366	0.00155872	3.44853e-4	0.0243306	0.00672121
chr21	43958634	43958734	7625370	0	+	0.47	(0.45,0.485]	chr21	796924	30	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000448845.1:ENST00000422850.5:ENST00000546158.1	protein_coding	protein_coding	protein_coding	protein_coding	0	159	2	6.58155	6.68019	6.77883	0.00421879	1.23522e-4	0.0421633	0.00321265
chr17	47562567	47562666	6747654	0	+	0.383838	(0.36,0.39]	chr17	679622	25	INTRON	INTRON	NPEPPS	ENSG00000141279.17	ENST00000525007.5:ENST00000525037.5:ENST00000677710.1:ENST00000530173.6:ENST00000526247.6:ENST00000677226.1:ENST00000322157.9:ENST00000678461.1:ENST00000532729.6:ENST00000533573.5:ENST00000677120.1:ENST00000678909.1:ENST00000678496.1:ENST00000678262.1:ENST00000677370.1:ENST00000677664.1:ENST00000528751.6:ENST00000527298.5:ENST00000534691.1:ENST00000602788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	162	2	6.60454	6.68009	6.75564	0.00388535	2.93176e-4	0.0401823	0.00597401
chr8	38768495	38768595	3802240	0	+	0.44	(0.419,0.45]	chr8	365828	107	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	366	2	5.53516	6.679995	7.82483	6.88099e-4	4.84065e-5	0.0154438	0.00160761
chrX	110116835	110116935	7934771	0	+	0.57	(0.523,0.58]	chrX	830401	73	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000461715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	160	2	6.33346	6.679995	7.02653	0.00571732	4.44459e-5	0.0498083	0.00150854
chr1	228144227	228144327	358026	0	+	0.59	(0.58,1]	chr1	40401	20	INTRON	INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	160	2	6.3182	6.679905	7.04161	5.99793e-4	1.74994e-4	0.0143535	0.00410754
chr10	133350486	133350586	4783439	0	-	0.6	(0.58,1]	chr10	457518	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000226699	ENSG00000226699.1	ENST00000452591.1	lncRNA	lncRNA	lncRNA	lncRNA	0	163	2	6.23832	6.679755	7.12119	5.01526e-4	2.24165e-4	0.0129939	0.00490779
chr17	77215479	77215576	6803129	0	+	0.701031	(0.58,1]	chr17	686684	16	UTR3	UTR3:EXON_MRNA:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	5	1440	2	5.97084	6.679575	7.38831	2.18341e-6	1.02008e-7	0.00109352	2.35652e-5
chr1	43965751	43965844	110819	0	+	0.580645	(0.58,1]	chr1	13723	11	INTRON	INTRON	IPO13	ENSG00000117408.11	ENST00000372343.8	protein_coding	protein_coding	protein_coding	protein_coding	0	152	2	6.59813	6.67948	6.76083	0.00158605	4.22142e-5	0.0245893	0.0014546
chr21	35297722	35297822	7659935	0	-	0.43	(0.419,0.45]	chr21	801082	2323	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000475045.6	protein_coding	protein_coding	protein_coding	protein_coding	0	173	2	6.23716	6.679475	7.12179	0.0024648	8.82327e-4	0.0313232	0.0129974
chr12	23950876	23950954	5388539	0	-	0.576923	(0.523,0.58]	chr12	528208	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SOX5	ENSG00000134532.19	ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2:ENST00000536729.2:ENST00000446891.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	171	2	5.99431	6.67937	7.36443	0.0104033	1.54352e-5	0.0686837	6.98728e-4
chr4	82370927	82371027	2265327	0	-	0.38	(0.36,0.39]	chr4	228229	109	INTRON	INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000513584.1:ENST00000509263.5:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	161	2	6.53282	6.678815	6.82481	0.00573632	1.5953e-4	0.0499133	0.00385227
chr16	85589430	85589530	6518967	0	+	0.63	(0.58,1]	chr16	646396	327	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	1	389	2	5.64227	6.67881	7.71535	1.59414e-4	1.5617e-6	0.00707035	1.40814e-4
chr16	56384718	56384818	6593815	0	-	0.39	(0.36,0.39]	chr16	659150	150	INTRON	INTRON	AMFR	ENSG00000159461.15	ENST00000290649.10:ENST00000492830.5:ENST00000567738.1:ENST00000566334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	163	2	6.52295	6.677944999999999	6.83294	0.00338675	3.65857e-4	0.0372054	0.00700609
chr3	124851648	124851748	1899833	0	-	0.41	(0.39,0.419]	chr3	192781	27	INTRON	INTRON	ITGB5	ENSG00000082781.12	ENST00000296181.9:ENST00000465464.5:ENST00000608657.5:ENST00000483168.5:ENST00000608107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	167	2	6.36745	6.67788	6.98831	0.0026369	5.58995e-4	0.0325876	0.00944382
chr13	93285606	93285706	5618368	0	+	0.39	(0.36,0.39]	chr13	553052	576	INTRON	INTRON	GPC6	ENSG00000183098.11	ENST00000377047.9	protein_coding	protein_coding	protein_coding	protein_coding	1	484	2	4.49394	6.6777750000000005	8.86161	0.00473193	3.45339e-7	0.0449264	5.18663e-5
chr1	5873841	5873905	386553	0	-	0.546875	(0.523,0.58]	chr1	44375	1	INTRON	INTRON	NPHP4	ENSG00000131697.18	ENST00000378156.9:ENST00000478423.6:ENST00000489180.6:ENST00000378169.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	172	2	5.96674	6.677535	7.38833	0.0109075	1.43066e-5	0.0707085	6.59187e-4
chr15	99695502	99695601	6199646	0	+	0.414141	(0.39,0.419]	chr15	610014	47	INTRON	INTRON	MEF2A	ENSG00000068305.18	ENST00000354410.9:ENST00000558812.5:ENST00000685785.1:ENST00000557785.5:ENST00000557942.6:ENST00000338042.11:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1	protein_coding	protein_coding	protein_coding	protein_coding	0	163	2	6.52237	6.676964999999999	6.83156	0.00348989	3.69587e-4	0.0379065	0.00704866
chr14	37249006	37249106	5783582	0	+	0.43	(0.419,0.45]	chr14	566873	7	INTRON	INTRON	MIPOL1	ENSG00000151338.20	ENST00000694961.1:ENST00000396294.6:ENST00000537471.6:ENST00000556615.5:ENST00000554114.2:ENST00000695502.1:ENST00000695405.1:ENST00000695503.1:ENST00000684589.1:ENST00000327441.11:ENST00000694962.1:ENST00000539062.6:ENST00000554930.5:ENST00000556451.5:ENST00000694963.1:ENST00000555870.5:ENST00000694964.1:ENST00000556753.5:ENST00000694965.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	162	2	6.65377	6.6758500000000005	6.69793	0.00514373	2.95666e-4	0.0471181	0.00601525
chr13	113057797	113057897	5656215	0	+	0.55	(0.523,0.58]	chr13	555189	30	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	1	364	2	5.13287	6.675649999999999	8.21843	1.37054e-4	8.7318e-5	0.00649687	0.00247172
chr16	85590928	85591028	6518982	0	+	0.68	(0.58,1]	chr16	646396	342	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	157	2	6.39389	6.67564	6.95739	7.23847e-4	1.38027e-4	0.0158739	0.00347229
chr1	17673686	17673785	54948	0	+	0.585859	(0.58,1]	chr1	5603	87	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	153	2	6.57822	6.6754	6.77258	0.00108768	7.66421e-5	0.0198535	0.00224403
chr15	28216500	28216599	6207136	0	-	0.666667	(0.58,1]	chr15	611111	3	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	0	153	2	6.57822	6.6754	6.77258	0.00108768	7.66421e-5	0.0198535	0.00224403
chr18	80177064	80177163	7183049	0	-	0.484848	(0.45,0.485]	chr18	730359	161	INTRON	INTRON	PARD6G	ENSG00000178184.16	ENST00000353265.8	protein_coding	protein_coding	protein_coding	protein_coding	0	161	2	6.32513	6.674905	7.02468	0.00666704	5.97847e-5	0.0540577	0.00186524
chr20	34919572	34919672	7463194	0	+	0.39	(0.36,0.39]	chr20	776978	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ACSS2	ENSG00000131069.20	ENST00000481284.5:ENST00000475459.6:ENST00000477932.5:ENST00000480978.5:ENST00000360596.7:ENST00000253382.5:ENST00000476922.5:ENST00000493250.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	192	2	5.87084	6.674245	7.47765	0.00196738	0.00103755	0.022768300000000002	0.019365
chr16	85388136	85388236	6516952	0	+	0.51	(0.485,0.523]	chr16	646391	288	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	186	2	5.90769	6.6737	7.43971	0.0011708	6.75881e-4	0.0157899	0.0153083
chr17	17821021	17821120	6865731	0	-	0.484848	(0.45,0.485]	chr17	695915	1	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	584	2	4.98587	6.67343	8.36099	6.50956e-4	9.02197e-7	0.0149908	9.79607e-5
chr2	233165622	233165722	1058282	0	+	0.44	(0.419,0.45]	chr2	115120	8	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493078.1:ENST00000472517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	364	2	5.615	6.673325	7.73165	8.17581e-4	3.83089e-5	0.0170128	0.00134825
chr7	79359672	79359771	3625595	0	-	0.373737	(0.36,0.39]	chr7	349234	79	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000628997.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	162	2	6.54378	6.673145	6.80251	0.00357532	3.45814e-4	0.0383635	0.00672667
chr17	73310680	73310780	6969818	0	-	0.56	(0.523,0.58]	chr17	710631	4	SS5_PROX	SS5_PROX:INTRON	CDC42EP4	ENSG00000179604.10	ENST00000335793.4:ENST00000439510.2:ENST00000581014.1:ENST00000580315.1:ENST00000579611.1	protein_coding	protein_coding	protein_coding	protein_coding	1	341	2	5.56084	6.673125	7.78541	3.3756e-4	2.26731e-5	0.0105112	9.21511e-4
chr7	36261024	36261124	3346066	0	+	0.44	(0.419,0.45]	chr7	323698	216	INTRON	INTRON	EEPD1	ENSG00000122547.11	ENST00000242108.9:ENST00000534978.1	protein_coding	protein_coding	protein_coding	protein_coding	1	456	2	5.46786	6.671995	7.87613	9.1003e-4	9.06003e-6	0.0180163	4.79092e-4
chr22	42949725	42949824	7823628	0	-	0.333333	(0.33,0.36]	chr22	820622	28	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000407585.5:ENST00000402229.5:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5:ENST00000453079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	159	2	6.54273	6.67188	6.80103	0.0047107	1.4311e-4	0.044852	0.00355964
chr7	103816462	103816562	3661959	0	-	0.4	(0.39,0.419]	chr7	353496	395	INTRON	INTRON	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1:ENST00000681401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	183	2	5.82918	6.671844999999999	7.51451	0.0186329	2.20408e-5	0.0932878	9.00215e-4
chr20	51598211	51598311	7577656	0	-	0.37	(0.36,0.39]	chr20	791738	18	UTR3	UTR3:EXON_MRNA	ATP9A	ENSG00000054793.14	ENST00000338821.6:ENST00000311637.9	protein_coding	protein_coding	protein_coding	protein_coding	0	163	2	6.48035	6.67154	6.86273	0.0032112	4.10333e-4	0.0362232	0.00761562
chr8	124564643	124564743	4063292	0	-	0.39	(0.36,0.39]	chr8	387078	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MTSS1	ENSG00000170873.19	ENST00000518547.6:ENST00000378017.7:ENST00000519168.5:ENST00000325064.9:ENST00000431961.6:ENST00000524090.5:ENST00000523179.5:ENST00000522722.1:ENST00000522118.1:ENST00000519226.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	164	2	6.43646	6.67138	6.9063	0.00296992	4.61522e-4	0.0347047	0.00824056
chr7	112174405	112174505	3692252	0	-	0.36	(0.33,0.36]	chr7	354969	1699	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	162	2	6.30116	6.671275	7.04139	0.00721369	7.15503e-5	0.0564903	0.00213856
chr5	209249	209349	2607674	0	-	0.53	(0.523,0.58]	chr5	259392	29	INTRON	INTRON	CCDC127	ENSG00000164366.4	ENST00000296824.4:ENST00000441693.2	protein_coding	protein_coding	protein_coding	protein_coding	0	157	2	6.66495	6.671250000000001	6.67755	0.00302793	1.32802e-4	0.0350226	0.00337193
chr5	882545	882645	2608201	0	-	0.55	(0.523,0.58]	chr5	259473	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	420	2	4.90543	6.67099	8.43655	0.00163982	4.57172e-7	0.0250898	6.24644e-5
chr6	158020687	158020787	3059699	0	+	0.48	(0.45,0.485]	chr6	297373	25	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	1	421	2	5.22721	6.6707350000000005	8.11426	9.84669e-4	2.00586e-6	0.018821	1.67176e-4
chrX	47219996	47220094	7877803	0	+	0.520408	(0.485,0.523]	chrX	825683	5	INTRON	INTRON	CDK16	ENSG00000102225.17	ENST00000517997.5:ENST00000517479.1:ENST00000457458.6:ENST00000522883.1:ENST00000520295.5:ENST00000357227.9:ENST00000519758.5:ENST00000520893.5:ENST00000517426.5:ENST00000522234.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	158	2	6.58086	6.670730000000001	6.7606	0.00256606	1.79455e-4	0.0320885	0.00418827
chrX	9568741	9568841	7843487	0	+	0.48	(0.45,0.485]	chrX	822423	78	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	347	2	5.62	6.670345	7.72069	4.77804e-4	2.36324e-5	0.0126433	9.49966e-4
chr13	38351795	38351892	5575942	0	+	0.360825	(0.36,0.39]	chr13	549839	12	INTRON	INTRON	UFM1	ENSG00000120686.12	ENST00000494372.1:ENST00000239878.9:ENST00000379649.5:ENST00000464423.1:ENST00000437952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	160	2	6.63995	6.670195	6.70044	0.00476216	2.25359e-4	0.0450109	0.00492301
chr3	13199726	13199826	1691139	0	-	0.66	(0.58,1]	chr3	176566	352	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	153	2	6.33437	6.6700099999999996	7.00565	0.00276493	1.8613e-5	0.0332418	8.01738e-4
chr1	48226280	48226378	120962	0	+	0.591837	(0.58,1]	chr1	15165	11	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	151	2	6.5414	6.669925	6.79845	0.00179018	3.72743e-5	0.0262802	0.00131851
chr15	101360518	101360617	6363144	0	-	0.656566	(0.58,1]	chr15	627205	41	INTRON	INTRON	PCSK6	ENSG00000140479.18	ENST00000677364.1:ENST00000676598.1:ENST00000558951.5:ENST00000398185.6:ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000679007.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000559605.1:ENST00000560902.5:ENST00000611967.4:ENST00000615296.4:ENST00000676494.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	151	2	6.5414	6.669925	6.79845	0.00179018	3.72743e-5	0.0262802	0.00131851
chr20	34566251	34566350	7547090	0	-	0.606061	(0.58,1]	chr20	787854	49	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	0	152	2	6.59969	6.66951	6.73933	0.00116939	7.15008e-5	0.0206836	0.00213784
chr12	93863532	93863631	5292953	0	+	0.484848	(0.45,0.485]	chr12	515024	37	INTRON	INTRON	CRADD	ENSG00000169372.13	ENST00000551065.5:ENST00000548483.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	185	2	5.92705	6.668865	7.41068	0.00129636	8.81297e-4	0.0176886	0.0170746
chr7	76999013	76999112	3398790	0	+	0.616162	(0.58,1]	chr7	328286	83	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	175	2	5.96814	6.66883	7.36952	5.06433e-4	2.84773e-4	0.00957277	0.00881473
chr17	46185722	46185822	6917758	0	-	0.53	(0.523,0.58]	chr17	704580	131	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639150.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	159	2	6.49924	6.66878	6.83832	0.00223061	2.16101e-4	0.0297064	0.00477041
chr7	47351535	47351635	3587306	0	-	0.58	(0.523,0.58]	chr7	346030	48	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	157	2	6.62527	6.668215	6.71116	0.00284169	1.49357e-4	0.033773	0.00367368
chr1	39419774	39419874	96910	0	+	0.53	(0.523,0.58]	chr1	11400	49	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000567887.5:ENST00000372915.8:ENST00000564288.6:ENST00000671089.2:ENST00000372925.6:ENST00000289893.8:ENST00000686067.1:ENST00000687997.1:ENST00000673980.1:ENST00000530275.3:ENST00000683517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	168	2	6.2084	6.667655	7.12691	0.00127326	4.95211e-4	0.0217367	0.00865935
chr2	239967931	239968030	1393496	0	-	0.424242	(0.419,0.45]	chr2	148817	33	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000471378.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	161	2	6.65377	6.667595	6.68142	0.00529005	2.95666e-4	0.047841	0.00601525
chr5	651196	651295	2378794	0	+	0.585859	(0.58,1]	chr5	237646	29	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	152	2	6.37822	6.667395	6.95657	0.00252415	2.19702e-5	0.031696	8.99734e-4
chr6	147803129	147803229	3030200	0	+	0.38	(0.36,0.39]	chr6	295875	657	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	0	160	2	6.47612	6.6672899999999995	6.85846	0.00632423	1.4518e-4	0.0524897	0.00359568
chr22	50711014	50711114	7755295	0	+	0.64	(0.58,1]	chr22	812777	45	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	1102	2	6.3139	6.667125	7.02035	1.00434e-5	5.32111e-8	0.00187093	1.56042e-5
chr10	49956425	49956522	4486721	0	+	0.42268	(0.419,0.45]	chr10	429091	10	INTRON	INTRON	TIMM23B	ENSG00000204152.14	ENST00000478381.5:ENST00000651259.3:ENST00000652716.1:ENST00000483296.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	161	2	6.46688	6.666395	6.86591	0.00757951	1.65832e-4	0.0579104	0.00396002
chr11	70720800	70720900	5061489	0	-	0.43	(0.419,0.45]	chr11	492701	29	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	164	2	6.44952	6.66609	6.8826599999999996	0.00374639	5.09118e-4	0.0393941	0.00884498
chr9	110169672	110169770	4217879	0	+	0.387755	(0.36,0.39]	chr9	400077	13	UTR3	UTR3:EXON_MRNA	PALM2AKAP2	ENSG00000157654.19	ENST00000374530.7:ENST00000302798.7:ENST00000434623.6:ENST00000374525.5	protein_coding	protein_coding	protein_coding	protein_coding	0	188	2	5.90345	6.6660699999999995	7.42869	0.00181603	0.00113746	0.0215865	0.0203659
chr7	76997324	76997424	3398773	0	+	0.61	(0.58,1]	chr7	328286	66	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	162	2	6.21068	6.665935	7.12119	5.01526e-4	2.44053e-4	0.0129939	0.00522003
chr17	72556726	72556826	6963878	0	-	0.51	(0.485,0.523]	chr17	710389	223	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	173	2	5.9104	6.665115	7.41983	0.0119344	1.3874e-5	0.0741726	6.45948e-4
chr14	104891318	104891414	5926139	0	+	0.625	(0.58,1]	chr14	579999	12	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	151	2	6.64169	6.66484	6.68799	0.00130716	6.2385e-5	0.0220198	0.00192539
chrX	116445450	116445550	7940792	0	+	0.46	(0.45,0.485]	chrX	830813	4	SS5_PROX	SS5_PROX:INTRON	SLC6A14	ENSG00000268104.3	ENST00000598581.3	protein_coding	protein_coding	protein_coding	protein_coding	0	246	2	5.1123	6.664524999999999	8.21675	0.0458344	1.44086e-6	0.142336	1.33252e-4
chr18	74276534	74276633	7178298	0	-	0.454545	(0.45,0.485]	chr18	730013	127	INTRON	INTRON	CYB5A	ENSG00000166347.19	ENST00000340533.9:ENST00000299438.13:ENST00000583418.1:ENST00000494131.6:ENST00000397914.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	172	2	6.13678	6.664085	7.19139	0.00134831	7.46272e-4	0.0224504	0.0115813
chr7	143385615	143385712	3510761	0	+	0.391753	(0.39,0.419]	chr7	338486	10	INTRON	INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	162	2	6.31166	6.663475	7.01529	0.00855563	9.4123e-5	0.0621561	0.00261888
chr2	235998810	235998910	1067604	0	+	0.56	(0.523,0.58]	chr2	115748	298	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5:ENST00000418654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	161	2	6.38509	6.663075	6.94106	0.00183008	3.00426e-4	0.0266451	0.00607383
chr2	127732123	127732222	1266925	0	-	0.363636	(0.36,0.39]	chr2	136569	50	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5	protein_coding	protein_coding	protein_coding	protein_coding	0	167	2	6.29617	6.662905	7.02964	0.00237667	6.68957e-4	0.0307601	0.0107572
chr4	868880	868978	2178281	0	-	0.561224	(0.523,0.58]	chr4	220580	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	156	2	6.47717	6.66281	6.84845	0.00439843	7.65992e-5	0.0429852	0.00224403
chr17	75957020	75957120	6973800	0	-	0.41	(0.39,0.419]	chr17	711662	2	SS5_PROX	SS5_PROX:INTRON	ACOX1	ENSG00000161533.12	ENST00000293217.10:ENST00000572047.5:ENST00000573078.5:ENST00000301608.8:ENST00000591857.5:ENST00000588176.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	164	2	6.39063	6.661944999999999	6.93326	0.00291102	5.25726e-4	0.0342042	0.00903907
chr11	61272522	61272610	5041301	0	-	0.409091	(0.39,0.419]	chr11	488756	4	INTRON	INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10:ENST00000535710.1:ENST00000398808.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	443	2	5.45534	6.6617999999999995	7.86826	8.02024e-4	7.63109e-6	0.0168312	4.24523e-4
chr4	2946211	2946311	2183682	0	-	0.61	(0.58,1]	chr4	221540	4	SS5_PROX	SS5_PROX:INTRON	NOP14	ENSG00000087269.16	ENST00000416614.7:ENST00000314262.10:ENST00000502735.5:ENST00000398071.4	protein_coding	protein_coding	protein_coding	protein_coding	1	315	2	5.85916	6.66164	7.46412	2.28899e-4	3.85655e-6	0.00852546	2.64149e-4
chr6	170398768	170398868	3076567	0	+	0.45	(0.419,0.45]	chr6	299192	28	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	7	3106	2	5.74932	6.661235	7.57315	1.18763e-4	9.77305e-9	0.00606093	5.27763e-6
chr9	116698215	116698315	4376606	0	-	0.56	(0.523,0.58]	chr9	418142	111	INTRON	INTRON	ASTN2	ENSG00000148219.18	ENST00000313400.9:ENST00000361209.6:ENST00000373986.7:ENST00000361477.8	protein_coding	protein_coding	protein_coding	protein_coding	0	183	2	5.72487	6.66123	7.59759	0.0163679	7.31734e-6	0.0875379	4.11658e-4
chr13	50091744	50091844	5593509	0	+	0.49	(0.485,0.523]	chr13	551518	79	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000469754.3:ENST00000655550.1:ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000659280.2	lncRNA	lncRNA	lncRNA	lncRNA	0	156	2	6.66087	6.661105	6.66134	0.00309962	1.41724e-4	0.0355173	0.00352935
chr17	47124160	47124260	6921674	0	-	0.45	(0.419,0.45]	chr17	704858	2	SS3_PROX	SS3_PROX:INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000571643.5:ENST00000527547.5:ENST00000526866.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	161	2	6.5755	6.66094	6.74638	0.00473615	3.64701e-4	0.0449264	0.00699922
chr21	41337777	41337877	7621684	0	+	0.45	(0.419,0.45]	chr21	796323	144	INTRON	INTRON	FAM3B	ENSG00000183844.17	ENST00000479810.6:ENST00000518236.1:ENST00000357985.7:ENST00000398647.7:ENST00000398652.7:ENST00000398646.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	168	2	6.1199	6.66082	7.20174	0.0132894	6.47219e-5	0.0787251	0.00198064
chrX	71217068	71217164	7903343	0	+	0.520833	(0.485,0.523]	chrX	827967	21	UTR5	UTR5:EXON_MRNA:INTRON	GJB1	ENSG00000169562.13	ENST00000674844.1:ENST00000674549.1:ENST00000374029.2:ENST00000675209.1:ENST00000675368.1:ENST00000647424.1:ENST00000675609.1:ENST00000646835.1:ENST00000447581.2	protein_coding	protein_coding	protein_coding	protein_coding	1	458	2	5.87836	6.66057	7.44278	2.19743e-4	1.29007e-5	0.00837909	6.14919e-4
chr2	239282876	239282976	1391537	0	-	0.43	(0.419,0.45]	chr2	148740	313	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	380	2	6.04788	6.660315000000001	7.27275	0.00188399	1.05644e-5	0.0271069	5.34898e-4
chr2	159265323	159265423	1287684	0	-	0.43	(0.419,0.45]	chr2	138404	51	INTRON	INTRON	WDSUB1	ENSG00000196151.11	ENST00000359774.9:ENST00000358147.8:ENST00000409990.7:ENST00000392796.7:ENST00000409124.1	protein_coding	protein_coding	protein_coding	protein_coding	0	172	2	6.1854	6.6596899999999994	7.13398	0.00241218	0.00100635	0.0309229	0.0142602
chr14	103106284	103106384	5921882	0	+	0.62	(0.58,1]	chr14	579222	1	SS3_PROX	SS3_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	150	2	6.5023	6.6596	6.8169	0.00194503	3.50609e-5	0.0275844	0.00126332
chr5	76426806	76426906	2457365	0	+	0.57	(0.523,0.58]	chr5	245476	219	INTRON	INTRON	IQGAP2	ENSG00000145703.17	ENST00000274364.11:ENST00000692467.1:ENST00000514350.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	157	2	6.54248	6.65931	6.77614	0.00251197	1.90498e-4	0.031696	0.0043642
chr5	56928961	56929061	2662319	0	-	0.45	(0.419,0.45]	chr5	264034	1	SS3_PROX	SS3_PROX:INTRON	MIER3	ENSG00000155545.20	ENST00000381226.7:ENST00000381213.7:ENST00000381199.8:ENST00000452157.5:ENST00000409421.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	160	2	6.65377	6.6592400000000005	6.66471	0.00544202	2.95666e-4	0.0486855	0.00601525
chr20	37189247	37189346	7471701	0	+	0.393939	(0.39,0.419]	chr20	777984	45	INTRON	INTRON	RPN2	ENSG00000118705.17	ENST00000456102.5:ENST00000373622.9:ENST00000373632.8:ENST00000237530.11:ENST00000462163.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	160	2	6.56375	6.6590050000000005	6.75426	0.00400086	3.30465e-4	0.0409634	0.00649658
chr16	12262042	12262142	6392489	0	+	0.64	(0.58,1]	chr16	631965	620	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	154	2	6.21852	6.65879	7.09906	0.00350812	1.35452e-5	0.0379357	6.38288e-4
chr3	30636746	30636846	1433394	0	+	0.53	(0.523,0.58]	chr3	153006	35	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4:ENST00000673250.1:ENST00000672866.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	674	2	4.5315	6.658765000000001	8.78603	9.20111e-4	1.39692e-7	0.0180913	2.88216e-5
chr16	11791023	11791123	6549973	0	-	0.45	(0.419,0.45]	chr16	652048	81	INTRON	INTRON	ZC3H7A	ENSG00000122299.12	ENST00000355758.9:ENST00000571198.5:ENST00000575170.1:ENST00000576018.5:ENST00000572781.5:ENST00000574995.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	161	2	6.55525	6.65871	6.76217	0.00460997	3.84925e-4	0.0442426	0.00726694
chr2	232888207	232888307	1383713	0	-	0.55	(0.523,0.58]	chr2	147928	1	SS3_PROX	SS3_PROX:INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000424488.5:ENST00000461944.1:ENST00000416114.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	451	2	5.14485	6.657875	8.1709	1.51444e-4	1.93036e-5	0.00686721	8.21997e-4
chr9	111470800	111470900	4369034	0	-	0.48	(0.45,0.485]	chr9	417454	189	INTRON	INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5:ENST00000602978.1	protein_coding	protein_coding	protein_coding	protein_coding	0	158	2	6.54668	6.65723	6.76778	0.0029996	2.40818e-4	0.0348875	0.00517788
chr16	57999207	57999299	6598135	0	-	0.456522	(0.45,0.485]	chr16	659815	3	SS5_PROX	SS5_PROX:INTRON	ZNF319	ENSG00000166188.3	ENST00000299237.3:ENST00000562909.1	protein_coding	protein_coding	protein_coding	protein_coding	0	157	2	6.62829	6.657195	6.6861	0.00348661	1.90839e-4	0.0379065	0.0043642
chr10	18569459	18569559	4642423	0	-	0.39	(0.36,0.39]	chr10	443321	171	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	162	2	6.43646	6.65693	6.8774	0.00312796	4.61522e-4	0.0356998	0.00824056
chr19	18467902	18468001	7347870	0	-	0.535354	(0.523,0.58]	chr19	761486	16	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	170	2	6.1255	6.656689999999999	7.18788	0.00112897	6.23263e-4	0.0202727	0.0101764
chr11	120328521	120328617	4951105	0	+	0.552083	(0.523,0.58]	chr11	478339	5	INTRON	INTRON	TLCD5	ENSG00000181264.9	ENST00000531346.1:ENST00000314475.6:ENST00000375095.3:ENST00000529187.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	155	2	6.5899	6.656195	6.72249	0.00356891	1.11891e-4	0.0383188	0.00298349
chr22	22312800	22312900	7691209	0	+	0.39	(0.36,0.39]	chr22	804948	20	INTRON	INTRON	ENSG00000286129	ENSG00000286129.1	ENST00000652112.1	lncRNA	lncRNA	lncRNA	lncRNA	0	159	2	6.43704	6.65602	6.875	0.00676148	1.38592e-4	0.0544904	0.00347765
chr5	138872051	138872150	2546949	0	+	0.373737	(0.36,0.39]	chr5	252848	12	INTRON	INTRON	CTNNA1	ENSG00000044115.21	ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518825.5:ENST00000523275.5:ENST00000517534.5:ENST00000520400.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	159	2	6.60454	6.655865	6.70719	0.00423228	2.93176e-4	0.0422099	0.00597401
chr14	89336354	89336454	6027466	0	-	0.4	(0.39,0.419]	chr14	591456	27	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	576	2	4.73978	6.65499	8.5702	1.30661e-4	5.74988e-5	0.00633398	0.00181688
chr7	5899319	5899419	3312349	0	+	0.53	(0.523,0.58]	chr7	321184	4	SS5_PROX	SS5_PROX:INTRON	CCZ1	ENSG00000122674.12	ENST00000461592.1:ENST00000325974.9:ENST00000478672.1:ENST00000628813.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	155	2	6.6256	6.65499	6.68438	0.00333843	1.2535e-4	0.0368376	0.00324328
chr17	77215673	77215771	6803131	0	+	0.55102	(0.523,0.58]	chr17	686684	18	UTR3	UTR3:EXON_MRNA:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	2	890	2	6.49136	6.654565	6.81777	6.00425e-5	3.49288e-7	0.00429933	5.22364e-5
chr10	72693166	72693266	4506258	0	+	0.44	(0.419,0.45]	chr10	431172	1	SS5_PROX	SS5_PROX:INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	168	2	6.26235	6.654375	7.0464	0.00281529	8.27298e-4	0.0336649	0.0124589
chr16	89431726	89431826	6661151	0	-	0.49	(0.485,0.523]	chr16	666752	4	SS3_PROX	SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	155	2	6.60829	6.654120000000001	6.69995	0.00342137	1.26446e-4	0.0374749	0.00325863
chr14	68899374	68899473	5999333	0	-	0.525253	(0.523,0.58]	chr14	588704	53	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	427	2	5.62073	6.653875	7.68702	3.80501e-4	5.47796e-6	0.0111766	3.37015e-4
chr17	81005008	81005108	6813312	0	+	0.5	(0.485,0.523]	chr17	688065	50	INTRON	INTRON	CHMP6	ENSG00000176108.9	ENST00000571457.1	protein_coding	protein_coding	protein_coding	protein_coding	0	166	2	6.2048	6.65351	7.10222	0.00132433	5.23665e-4	0.0222129	0.0090184
chr18	75029562	75029662	7093579	0	+	0.65	(0.58,1]	chr18	722473	1085	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10	protein_coding	protein_coding	protein_coding	protein_coding	0	159	2	6.23832	6.653475	7.06863	5.64522e-4	2.24165e-4	0.0138715	0.00490779
chr13	113012764	113012864	5655751	0	+	0.66	(0.58,1]	chr13	555138	104	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	318	2	5.40703	6.653445	7.89986	8.22613e-5	1.89666e-5	0.00502313	8.10733e-4
chr8	699596	699696	3932725	0	-	0.51	(0.485,0.523]	chr8	376054	66	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000524138.5:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	162	2	6.12521	6.653309999999999	7.18141	0.00823189	2.93111e-5	0.0608959	0.00110673
chr11	107330618	107330717	5115814	0	-	0.474747	(0.45,0.485]	chr11	496792	2	INTRON	INTRON	CWF19L2	ENSG00000152404.16	ENST00000282251.10:ENST00000431778.5:ENST00000532251.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	156	2	6.56336	6.6530000000000005	6.74264	0.00436001	1.37232e-4	0.0427656	0.00346319
chr13	20498393	20498493	5662824	0	-	0.48	(0.45,0.485]	chr13	556208	85	INTRON	INTRON	CRYL1	ENSG00000165475.15	ENST00000643035.1:ENST00000644593.1:ENST00000298248.12:ENST00000644872.1:ENST00000382812.5:ENST00000643750.1:ENST00000644153.1:ENST00000643887.1:ENST00000644167.1:ENST00000646414.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	156	2	6.59951	6.652515	6.70552	0.00408353	1.52809e-4	0.0413652	0.00372909
chr9	33157177	33157276	4293485	0	-	0.424242	(0.419,0.45]	chr9	410135	214	INTRON	INTRON	B4GALT1	ENSG00000086062.13	ENST00000535206.5:ENST00000379731.5	protein_coding	protein_coding	protein_coding	protein_coding	0	159	2	6.61339	6.652375	6.69136	0.0059347	2.67131e-4	0.0506158	0.00557451
chr19	33506559	33506658	7365919	0	-	0.525253	(0.523,0.58]	chr19	763467	52	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000651646.1:ENST00000590408.1:ENST00000593163.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	156	2	6.35489	6.651595	6.9483	0.00549977	5.65196e-5	0.0489559	0.00179471
chr10	79219873	79219973	4533560	0	+	0.59	(0.58,1]	chr10	432457	32	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	152	2	6.4658	6.651325	6.83685	9.44859e-4	1.09908e-4	0.0183873	0.00294443
chr16	81646181	81646281	6509761	0	+	0.5	(0.485,0.523]	chr16	645931	4	SS5_PROX	SS5_PROX:INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8:ENST00000564666.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	168	2	6.15007	6.651055	7.15204	0.00120048	6.0909e-4	0.0210159	0.0100377
chr20	35343409	35343509	7552868	0	-	0.49	(0.485,0.523]	chr20	788509	281	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000497717.5:ENST00000443429.5:ENST00000438533.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	338	2	5.4849	6.650985	7.81707	3.12689e-4	3.02621e-5	0.0100453	0.00113573
chr16	89432125	89432225	6661155	0	-	0.43	(0.419,0.45]	chr16	666753	4	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	161	2	6.32522	6.65093	6.97664	0.00956261	1.22002e-4	0.0658012	0.00318856
chr19	15642113	15642212	7215374	0	+	0.535354	(0.523,0.58]	chr19	737133	1	INTRON	INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	179	2	5.94389	6.6503	7.35671	0.0010207	8.06717e-4	0.0168786	0.0143498
chr8	122891223	122891323	3910758	0	+	0.41	(0.39,0.419]	chr8	373489	273	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6:ENST00000534247.1	protein_coding	protein_coding	protein_coding	protein_coding	1	454	2	5.61702	6.650285	7.68355	5.87134e-4	1.33158e-5	0.0142117	6.29955e-4
chr16	85426220	85426320	6517333	0	+	0.5	(0.485,0.523]	chr16	646391	669	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	186	2	5.84014	6.649884999999999	7.45963	0.00139792	6.49227e-4	0.0179863	0.0149631
chr6	88760981	88761081	3199947	0	-	0.34	(0.33,0.36]	chr6	310400	467	INTRON	INTRON	RNGTT	ENSG00000111880.16	ENST00000369485.9:ENST00000369475.7:ENST00000627296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	158	2	6.5336	6.64958	6.76556	0.00314493	3.03099e-4	0.0358293	0.00611977
chr15	57275358	57275458	6113942	0	+	0.55	(0.523,0.58]	chr15	601729	17	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000543579.5:ENST00000537840.5:ENST00000343827.7:ENST00000559710.5:ENST00000559703.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	156	2	6.33346	6.648875	6.96429	0.00571732	5.38186e-5	0.0498083	0.0017322
chr19	46979291	46979391	7275366	0	+	0.57	(0.523,0.58]	chr19	747275	415	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	156	2	6.52102	6.64858	6.77614	0.00251197	2.02818e-4	0.031696	0.0045746
chr12	94175070	94175169	5293537	0	+	0.50505	(0.485,0.523]	chr12	515049	54	INTRON	INTRON	PLXNC1	ENSG00000136040.9	ENST00000258526.9:ENST00000546733.1:ENST00000551850.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	157	2	6.47351	6.64848	6.82345	0.00227572	2.44978e-4	0.0301405	0.00523316
chr12	132950264	132950363	5542034	0	-	0.515152	(0.485,0.523]	chr12	547064	16	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	343	2	5.92863	6.648175	7.36772	7.81266e-4	7.26369e-6	0.016579	4.10219e-4
chr16	1727055	1727154	6371206	0	+	0.555556	(0.523,0.58]	chr16	628837	20	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000685565.1:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	340	2	5.36784	6.647945	7.92805	2.51374e-4	4.18946e-5	0.0089838	0.00145043
chr2	3502988	3503088	1081955	0	-	0.49	(0.485,0.523]	chr2	117683	16	INTRON	INTRON	ADI1	ENSG00000182551.14	ENST00000327435.11:ENST00000382093.5	protein_coding	protein_coding	protein_coding	protein_coding	0	165	2	6.0218	6.647845	7.27389	0.00985907	2.19669e-5	0.0670775	8.99734e-4
chr2	232900366	232900465	1383842	0	-	0.434343	(0.419,0.45]	chr2	147952	51	INTRON	INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000416114.3:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	161	2	6.3038	6.6477900000000005	6.99178	0.00990101	1.16955e-4	0.0671959	0.00308693
chr1	165746407	165746507	607930	0	-	0.38	(0.36,0.39]	chr1	72384	27	INTRON	INTRON	TMCO1	ENSG00000143183.18	ENST00000612311.4:ENST00000367881.11:ENST00000580248.5:ENST00000464650.5:ENST00000476143.7:ENST00000481278.5:ENST00000465705.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	159	2	6.52295	6.64719	6.77143	0.00377816	3.65857e-4	0.0396337	0.00700609
chr10	132712751	132712851	4618595	0	+	0.53	(0.523,0.58]	chr10	441181	19	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000487614.1:ENST00000498337.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	154	2	6.53464	6.647125	6.75961	0.00395533	1.00121e-4	0.0406092	0.00274217
chr5	39051021	39051121	2644631	0	-	0.42	(0.419,0.45]	chr5	262658	295	INTRON	INTRON	RICTOR	ENSG00000164327.13	ENST00000357387.8:ENST00000511516.5:ENST00000296782.9:ENST00000510711.5:ENST00000513566.1:ENST00000514735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	358	2	5.47653	6.64691	7.81729	6.97788e-4	5.74353e-5	0.0155984	0.00181521
chr2	17739865	17739960	1094769	0	-	0.410526	(0.39,0.419]	chr2	119295	12	INTRON	INTRON	SMC6	ENSG00000163029.16	ENST00000351948.8:ENST00000448223.7:ENST00000402989.5:ENST00000446852.5:ENST00000381272.5	protein_coding	protein_coding	protein_coding	protein_coding	0	158	2	6.43567	6.64678	6.85789	0.00694268	1.46825e-4	0.0553898	0.00363163
chr9	134337937	134338037	4260802	0	+	0.69	(0.58,1]	chr9	406311	109	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	159	2	6.21068	6.6463149999999995	7.08195	5.47872e-4	2.44053e-4	0.0136476	0.00522003
chr9	114074555	114074652	4373774	0	-	0.329897	(0.29,0.33]	chr9	418049	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AMBP	ENSG00000106927.12	ENST00000265132.8:ENST00000540645.5:ENST00000466610.6:ENST00000603230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	157	2	6.27451	6.645995	7.01748	0.00564709	5.3301e-5	0.0495171	0.00172247
chr8	123246457	123246557	4060619	0	-	0.42	(0.419,0.45]	chr8	386708	52	INTRON	INTRON	ZHX1-C8orf76	ENSG00000259305.6	ENST00000357082.8:ENST00000622816.2	protein_coding	protein_coding	protein_coding	protein_coding	0	159	2	6.5755	6.644880000000001	6.71426	0.0050028	3.64701e-4	0.0463896	0.00699922
chr10	18570558	18570658	4642434	0	-	0.44	(0.419,0.45]	chr10	443321	182	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	158	2	6.56018	6.64409	6.728	0.00648928	2.41873e-4	0.0532359	0.00518926
chr8	143322360	143322454	4095551	0	-	0.62766	(0.58,1]	chr8	389125	6	INTRON	INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	152	2	6.21852	6.643555	7.06859	0.00350812	1.50295e-5	0.0379357	6.85908e-4
chr3	195150693	195150792	1981520	0	-	0.535354	(0.523,0.58]	chr3	201666	38	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000437101.5:ENST00000473200.1:ENST00000429994.5:ENST00000418940.5:ENST00000491138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	155	2	6.35489	6.64351	6.93213	0.00549977	5.9384e-5	0.0489559	0.00185705
chr8	22560834	22560930	3771901	0	+	0.625	(0.58,1]	chr8	362927	1	SS3_PROX	SS3_PROX:INTRON	SORBS3	ENSG00000120896.14	ENST00000240123.12:ENST00000517500.5:ENST00000517535.5:ENST00000523402.5:ENST00000520563.3:ENST00000524057.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	489	2	6.38089	6.643330000000001	6.90577	2.67115e-5	2.60624e-5	0.00293623	0.00101533
chr17	46635690	46635788	6745457	0	+	0.408163	(0.39,0.419]	chr17	679387	49	INTRON	INTRON	NSF	ENSG00000073969.18	ENST00000398238.8:ENST00000571864.5:ENST00000571172.5:ENST00000575068.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	157	2	6.54987	6.643190000000001	6.73651	0.00571127	2.05874e-4	0.0498083	0.00461335
chr10	100971084	100971178	4569833	0	+	0.468085	(0.45,0.485]	chr10	436226	8	INTRON	INTRON	SEMA4G	ENSG00000095539.15	ENST00000519649.5:ENST00000521006.5:ENST00000518124.5:ENST00000518244.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	413	2	5.09618	6.64315	8.19012	0.00127592	1.57041e-6	0.0217654	1.41191e-4
chr4	869761	869859	2178290	0	-	0.479592	(0.45,0.485]	chr4	220580	12	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	155	2	6.50739	6.64311	6.77883	0.00482293	1.23522e-4	0.0453395	0.00321265
chr13	93234614	93234714	5617858	0	+	0.42	(0.419,0.45]	chr13	553052	66	INTRON	INTRON	GPC6	ENSG00000183098.11	ENST00000377047.9	protein_coding	protein_coding	protein_coding	protein_coding	0	163	2	6.19164	6.642605	7.09357	0.0118587	8.791e-5	0.0740271	0.00248329
chr7	76997225	76997324	3398772	0	+	0.606061	(0.58,1]	chr7	328286	65	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	165	2	6.06394	6.6424199999999995	7.2209	4.00118e-4	3.80904e-4	0.0114335	0.00721291
chr3	105861631	105861731	1862903	0	-	0.42	(0.419,0.45]	chr3	189859	76	INTRON	INTRON	CBLB	ENSG00000114423.23	ENST00000645759.1:ENST00000394030.8:ENST00000646499.1:ENST00000645425.1:ENST00000646825.1:ENST00000643322.1:ENST00000403724.5:ENST00000405772.5:ENST00000447441.6:ENST00000438603.6:ENST00000443752.2:ENST00000643192.1:ENST00000642907.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	168	2	6.21151	6.64174	7.07197	0.00269142	9.41863e-4	0.0329086	0.0135546
chr12	15919910	15920010	5176345	0	+	0.48	(0.45,0.485]	chr12	503959	32	INTRON	INTRON	DERA	ENSG00000023697.13	ENST00000526521.5:ENST00000524480.5:ENST00000428559.7:ENST00000531803.5:ENST00000532964.5:ENST00000528821.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	167	2	6.1644	6.64147	7.11854	0.00155043	6.92954e-4	0.0243127	0.0109657
chr10	132755172	132755272	4619024	0	+	0.55	(0.523,0.58]	chr10	441201	13	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	1	340	2	5.92596	6.641335	7.35671	8.06717e-4	6.93607e-6	0.0168786	3.98251e-4
chr5	140407762	140407862	2551369	0	+	0.34	(0.33,0.36]	chr5	253267	51	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000616482.4:ENST00000360839.7:ENST00000421134.5:ENST00000394723.7:ENST00000511151.5:ENST00000394722.7	protein_coding	protein_coding	protein_coding	protein_coding	0	156	2	6.6152	6.641085	6.66697	0.00376513	2.41669e-4	0.0395491	0.00518926
chr19	40055933	40056033	7379008	0	-	0.63	(0.58,1]	chr19	765548	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF780B	ENSG00000128000.17	ENST00000434248.6:ENST00000221355.10:ENST00000598845.5:ENST00000594811.1:ENST00000593605.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	148	2	6.57947	6.64098	6.70249	0.00165065	5.11463e-5	0.0250898	0.00167326
chr16	81646081	81646181	6509760	0	+	0.52	(0.485,0.523]	chr16	645931	3	SS5_PROX	SS5_PROX:INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8:ENST00000564666.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	169	2	6.09319	6.640755	7.18832	0.00111738	7.11715e-4	0.0202011	0.0112082
chr16	89306242	89306342	6659874	0	-	0.68	(0.58,1]	chr16	666665	5	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1:ENST00000647539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	148	2	6.59813	6.64032	6.68251	0.00158605	5.46055e-5	0.0245893	0.00175188
chrX	315499	315599	7964850	0	-	0.5	(0.485,0.523]	chrX	834135	2	SS3_PROX	SS3_PROX:INTRON	GTPBP6	ENSG00000178605.13	ENST00000326153.9	protein_coding	protein_coding	protein_coding	protein_coding	6	1782	2	5.94455	6.639239999999999	7.33393	9.50337e-6	2.71031e-7	0.00184506	4.42358e-5
chr3	28278039	28278139	1432612	0	+	0.42	(0.419,0.45]	chr3	152954	143	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2:ENST00000396610.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	158	2	6.59547	6.638445	6.68142	0.00529005	3.45753e-4	0.047841	0.00672667
chr1	246234323	246234423	703128	0	-	0.44	(0.419,0.45]	chr1	82422	407	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	159	2	6.34633	6.638275	6.93022	0.00923958	1.38812e-4	0.0644666	0.00347953
chr7	155737229	155737329	3519459	0	+	0.46	(0.45,0.485]	chr7	339833	3	SS3_PROX	SS3_PROX:INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	157	2	6.2813	6.637765	6.99423	0.00719875	6.5472e-5	0.056408	0.00199814
chr10	18565262	18565362	4642381	0	-	0.39	(0.36,0.39]	chr10	443321	129	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	157	2	6.58457	6.63762	6.69067	0.00435707	3.09569e-4	0.0427656	0.00622124
chrX	9531288	9531388	7843109	0	+	0.39	(0.36,0.39]	chrX	822407	2	SS5_PROX	SS5_PROX:INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1	protein_coding	protein_coding	protein_coding	protein_coding	1	374	2	5.03666	6.637404999999999	8.23815	2.40518e-4	1.82419e-4	0.00875172	0.00423714
chr15	34554356	34554456	6218162	0	-	0.49	(0.485,0.523]	chr15	612406	4	SS3_PROX	SS3_PROX:INTRON	GOLGA8B	ENSG00000215252.12	ENST00000683415.1:ENST00000569100.5:ENST00000484716.5:ENST00000564575.5:ENST00000566091.5:ENST00000566258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	156	2	6.45105	6.63725	6.82345	0.00227572	2.61322e-4	0.0301405	0.00551565
chr7	130907422	130907522	3711050	0	-	0.35	(0.33,0.36]	chr7	356708	227	INTRON	INTRON	ENSG00000226380	ENSG00000226380.9	ENST00000432045.6:ENST00000447307.5:ENST00000418546.1	lncRNA	lncRNA	lncRNA	lncRNA	0	170	2	5.92813	6.6372	7.34627	0.0135535	2.90433e-5	0.0793558	0.00110206
chr19	2882461	2882559	7190591	0	+	0.295918	(0.29,0.33]	chr19	732053	43	UTR3	UTR3:EXON_MRNA	ZNF556	ENSG00000172000.7	ENST00000307635.3	protein_coding	protein_coding	protein_coding	protein_coding	0	153	2	6.56063	6.63704	6.71345	0.00330556	1.32058e-4	0.0368376	0.00336653
chr10	11528067	11528164	4628837	0	-	0.474227	(0.45,0.485]	chr10	442283	1	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000379237.6:ENST00000277575.5	protein_coding	protein_coding	protein_coding	protein_coding	0	159	2	6.18942	6.63658	7.08374	0.00844217	5.00903e-5	0.0617623	0.00164756
chr7	2763233	2763327	3534275	0	-	0.56383	(0.523,0.58]	chr7	341309	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	GNA12	ENSG00000146535.14	ENST00000275364.8:ENST00000407904.7:ENST00000496740.6:ENST00000471281.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	171	2	6.03756	6.636215	7.23487	0.00102861	7.92905e-4	0.0192522	0.0120621
chr1	93454100	93454200	185673	0	+	0.39	(0.36,0.39]	chr1	20160	54	INTRON	INTRON	FNBP1L	ENSG00000137942.18	ENST00000271234.13:ENST00000260506.12:ENST00000370253.6	protein_coding	protein_coding	protein_coding	protein_coding	0	163	2	6.29617	6.636145	6.97612	0.00261876	6.68957e-4	0.0324697	0.0107572
chr12	132951060	132951160	5542042	0	-	0.44	(0.419,0.45]	chr12	547064	24	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	166	2	6.07002	6.63588	7.20174	0.0143746	6.47219e-5	0.0821732	0.00198064
chr1	204082377	204082477	322143	0	+	0.49	(0.485,0.523]	chr1	36272	38	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1:ENST00000528591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	153	2	6.49701	6.63561	6.77421	0.00420849	1.01398e-4	0.0421454	0.00276585
chr8	52369687	52369787	3977444	0	-	0.3	(0.29,0.33]	chr8	380468	1155	INTRON	INTRON	ST18	ENSG00000147488.12	ENST00000693301.1:ENST00000689386.1:ENST00000276480.11:ENST00000517580.5:ENST00000521549.5:ENST00000520279.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	161	2	6.0813	6.635425	7.18955	0.00801413	3.15128e-5	0.0598161	0.00116717
chr19	323035	323135	7303106	0	-	0.49	(0.485,0.523]	chr19	752407	90	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	158	2	6.35753	6.635205	6.91288	0.00191584	3.41236e-4	0.0274102	0.00667174
chrX	300609	300708	7829277	0	+	0.333333	(0.33,0.36]	chrX	821899	14	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	0	182	2	5.88143	6.634695	7.38796	0.00169367	9.70765e-4	0.0204799	0.0187279
chr4	184460641	184460741	2366897	0	-	0.53	(0.523,0.58]	chr4	236383	42	INTRON	INTRON	IRF2	ENSG00000168310.12	ENST00000696840.1:ENST00000393593.8:ENST00000696846.1:ENST00000696845.1:ENST00000696844.1:ENST00000502750.2:ENST00000696843.1:ENST00000696842.1:ENST00000696852.1:ENST00000696853.1:ENST00000696851.1:ENST00000696850.1:ENST00000696849.1:ENST00000510814.6:ENST00000505067.6:ENST00000504340.2:ENST00000507523.5:ENST00000512020.5:ENST00000506230.5:ENST00000509274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	155	2	6.47712	6.63453	6.79194	0.00243746	2.30436e-4	0.0311222	0.00498593
chr3	111751188	111751288	1534462	0	+	0.57	(0.523,0.58]	chr3	162941	181	INTRON	INTRON	PLCXD2:PHLDB2	ENSG00000240891.8:ENSG00000144824.21	ENST00000393934.7:ENST00000477665.2:ENST00000474484.1:ENST00000393923.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	165	2	6.15367	6.634035	7.1144	0.00130498	5.76607e-4	0.0220198	0.00963379
chr12	132530379	132530478	5352919	0	+	0.656566	(0.58,1]	chr12	523670	20	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	149	2	6.51182	6.633935	6.75605	0.00112759	9.48877e-5	0.0202727	0.00262417
chr19	48904046	48904146	7280384	0	+	0.47	(0.45,0.485]	chr19	748037	3	SS3_PROX	SS3_PROX:INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000443560.1:ENST00000411700.5:ENST00000451312.5:ENST00000424608.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	154	2	6.48824	6.633535	6.77883	0.00499158	1.23522e-4	0.0463896	0.00321265
chr10	127428800	127428899	4612236	0	+	0.59596	(0.58,1]	chr10	440909	24	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2	protein_coding	protein_coding	protein_coding	protein_coding	0	155	2	6.06599	6.63345	7.20091	0.00477081	9.5483e-6	0.0450109	4.9724e-4
chr12	23951231	23951331	5388543	0	-	0.46	(0.45,0.485]	chr12	528209	3	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000646273.1:ENST00000659413.1:ENST00000536729.2:ENST00000446891.7	protein_coding	protein_coding	protein_coding	protein_coding	0	178	2	5.74913	6.63341	7.51769	0.017574	1.32798e-5	0.0906595	6.28604e-4
chr14	75811130	75811230	5888915	0	+	0.47	(0.45,0.485]	chr14	575180	75	INTRON	INTRON	TTLL5	ENSG00000119685.20	ENST00000298832.14:ENST00000557636.5:ENST00000556893.5:ENST00000554510.5:ENST00000555018.3:ENST00000608522.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	158	2	6.39173	6.633305	6.87488	0.00245783	3.72107e-4	0.0312836	0.00707906
chr10	103339769	103339869	4755819	0	-	0.43	(0.419,0.45]	chr10	454655	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PCGF6	ENSG00000156374.16	ENST00000369847.4:ENST00000337211.8:ENST00000490296.1:ENST00000647574.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	486	2	4.82664	6.633290000000001	8.43994	2.16212e-4	9.90083e-5	0.00831529	0.002717
chr11	46419944	46420043	5031081	0	-	0.515152	(0.485,0.523]	chr11	486630	15	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1	protein_coding	protein_coding	protein_coding	protein_coding	0	155	2	6.29006	6.6332699999999996	6.97648	0.00613935	5.50755e-5	0.0517628	0.00176017
chr17	642697	642797	6823603	0	-	0.46	(0.45,0.485]	chr17	689804	95	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000680944.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000681830.1:ENST00000679959.1:ENST00000680114.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000570650.2:ENST00000679680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	155	2	6.36767	6.63323	6.89879	0.00618594	8.68871e-5	0.0519442	0.00246367
chr12	100191091	100191190	5482515	0	-	0.484848	(0.45,0.485]	chr12	539060	100	INTRON	INTRON	ENSG00000257489	ENSG00000257489.6	ENST00000548404.6:ENST00000550096.5:ENST00000548782.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	155	2	6.54668	6.633005000000001	6.71933	0.00328012	2.40818e-4	0.0367219	0.00517788
chr17	15454483	15454583	6859979	0	-	0.54	(0.523,0.58]	chr17	695067	10	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	154	2	6.33346	6.632795	6.93213	0.00571732	5.9384e-5	0.0498083	0.00185705
chr17	80290158	80290247	6807472	0	+	0.539326	(0.523,0.58]	chr17	687386	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000319921.4:ENST00000559070.5:ENST00000573548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	158	2	6.14951	6.632325	7.11514	0.00793972	3.37828e-5	0.0596361	0.00122993
chr12	111987466	111987566	5501470	0	-	0.41	(0.39,0.419]	chr12	541547	83	INTRON	INTRON	TMEM116	ENSG00000198270.13	ENST00000550831.7:ENST00000552374.7:ENST00000355445.7:ENST00000547878.6:ENST00000549537.6:ENST00000552801.6:ENST00000548283.6:ENST00000550800.6:ENST00000550037.5:ENST00000551297.6:ENST00000550020.6:ENST00000546537.6:ENST00000549425.5:ENST00000552839.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	156	2	6.47475	6.632265	6.78978	0.00649594	1.77584e-4	0.0532359	0.00415615
chr1	246233223	246233323	703117	0	-	0.43	(0.419,0.45]	chr1	82422	396	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	171	2	5.93719	6.63182	7.32645	0.0176643	4.53126e-5	0.0909046	0.00153182
chr11	96242995	96243095	5112566	0	-	0.44	(0.419,0.45]	chr11	496566	1491	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	2	695	2	5.48863	6.631665	7.7747	3.75858e-4	1.22452e-5	0.011139	5.92597e-4
chr2	235893244	235893344	1066546	0	+	0.6	(0.58,1]	chr2	115730	94	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	150	2	6.44222	6.6316299999999995	6.82104	9.78215e-4	1.18459e-4	0.0187475	0.00311099
chr16	618959	619058	6368583	0	+	0.585859	(0.58,1]	chr16	628044	3	INTRON	INTRON	RAB40C	ENSG00000197562.10	ENST00000535977.5:ENST00000569575.5:ENST00000539661.5:ENST00000566290.5:ENST00000248139.8:ENST00000568586.5:ENST00000538492.5:ENST00000565511.5:ENST00000509637.6:ENST00000563109.1:ENST00000564703.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	147	2	6.56056	6.631525	6.70249	0.00171861	5.11463e-5	0.025659	0.00167326
chr14	54625791	54625891	5820031	0	+	0.4	(0.39,0.419]	chr14	569049	573	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	156	2	6.45534	6.631225	6.80711	0.00671435	1.69216e-4	0.0541693	0.004014
chr4	78801281	78801381	2071674	0	+	0.41	(0.39,0.419]	chr4	211658	242	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	156	2	6.62366	6.63112	6.63858	0.00489861	2.80749e-4	0.0457614	0.00578259
chr21	44810997	44811095	7678243	0	-	0.530612	(0.523,0.58]	chr21	802721	15	INTRON	INTRON	SUMO3	ENSG00000184900.16	ENST00000479153.1:ENST00000411651.6:ENST00000332859.11:ENST00000397898.7:ENST00000397893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	153	2	6.58447	6.63101	6.67755	0.00302793	1.68436e-4	0.0350226	0.00400681
chr21	45500043	45500142	7631305	0	+	0.606061	(0.58,1]	chr21	797812	20	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	0	159	2	6.15376	6.630995	7.10823	5.16402e-4	2.90409e-4	0.0132022	0.0059241
chr6	169649872	169649969	3304362	0	-	0.587629	(0.58,1]	chr6	319869	2	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	365	2	5.31115	6.63095	7.95075	3.47809e-4	6.67696e-7	0.0106878	8.03272e-5
chr1	1108761	1108860	380270	0	-	0.585859	(0.58,1]	chr1	42816	15	INTRON	INTRON	C1orf159	ENSG00000131591.18	ENST00000379339.5:ENST00000379325.7:ENST00000421241.7:ENST00000467751.5:ENST00000477196.5:ENST00000434641.5:ENST00000482816.5:ENST00000462097.5:ENST00000475119.5:ENST00000472741.5:ENST00000480643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	172	2	5.70191	6.630825	7.55974	0.00964351	2.72008e-6	0.0659937	2.04763e-4
chr2	239079695	239079795	1389467	0	-	0.45	(0.419,0.45]	chr2	148587	104	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000494800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	158	2	6.34633	6.63037	6.91441	0.00923958	1.45031e-4	0.0644666	0.00359413
chr19	39158145	39158244	7259590	0	+	0.545455	(0.523,0.58]	chr19	744161	9	INTRON	INTRON	PAK4	ENSG00000130669.17	ENST00000602004.1:ENST00000599470.5:ENST00000360442.8:ENST00000321944.8:ENST00000593480.5:ENST00000358301.7:ENST00000593690.5:ENST00000599386.5:ENST00000599657.5	protein_coding	protein_coding	protein_coding	protein_coding	1	334	2	5.39849	6.630364999999999	7.86224	2.88079e-4	3.80262e-5	0.00964028	0.00134128
chr2	42457567	42457667	1130863	0	-	0.56	(0.523,0.58]	chr2	123823	126	INTRON	INTRON	KCNG3	ENSG00000171126.8	ENST00000306078.2:ENST00000394973.4	protein_coding	protein_coding	protein_coding	protein_coding	0	167	2	6.09678	6.6302900000000005	7.1638	0.00118398	6.74499e-4	0.020806	0.0108081
chr11	64144164	64144264	5049019	0	-	0.61	(0.58,1]	chr11	490257	174	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	147	2	6.46212	6.630285	6.79845	0.00211728	3.72743e-5	0.028892	0.00131851
chr8	639783	639883	3932118	0	-	0.56	(0.523,0.58]	chr8	376009	18	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1:ENST00000523709.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	157	2	6.17383	6.630015	7.0862	0.00760615	3.69579e-5	0.0579698	0.00131447
chr10	18573056	18573156	4642459	0	-	0.47	(0.45,0.485]	chr10	443321	207	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	156	2	6.46019	6.629695	6.7992	0.00282996	3.07362e-4	0.033746	0.00618726
chr6	15320836	15320936	2857255	0	+	0.39	(0.36,0.39]	chr6	279178	715	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	0	157	2	6.50181	6.628724999999999	6.75564	0.00388535	3.87323e-4	0.0401823	0.00729662
chr2	9488584	9488683	1084526	0	-	0.323232	(0.29,0.33]	chr2	118093	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ADAM17	ENSG00000151694.14	ENST00000310823.8:ENST00000648548.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	160	2	6.0813	6.628635	7.17597	0.00801413	3.2857e-5	0.0598161	0.00120722
chr2	239290470	239290570	1391613	0	-	0.44	(0.419,0.45]	chr2	148740	389	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	157	2	6.40787	6.6286249999999995	6.84938	0.00835435	1.73559e-4	0.0613588	0.0040962
chr10	133348989	133349088	4783424	0	-	0.676768	(0.58,1]	chr10	457516	28	INTRON	INTRON	ENSG00000226699	ENSG00000226699.1	ENST00000452591.1	lncRNA	lncRNA	lncRNA	lncRNA	1	328	2	5.13424	6.62835	8.12246	4.83056e-5	4.81873e-5	0.00382447	0.00160255
chr6	3343473	3343573	3086924	0	-	0.34	(0.33,0.36]	chr6	299774	191	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000496753.1:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	162	2	6.25683	6.6282250000000005	6.99962	0.0020365	6.42061e-4	0.0283511	0.0104165
chr4	3363396	3363496	2005070	0	+	0.6	(0.58,1]	chr4	204663	200	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	147	2	6.42078	6.62795	6.83512	0.00230938	3.30003e-5	0.0302623	0.00120982
chr11	68269567	68269665	5057319	0	-	0.510204	(0.485,0.523]	chr11	492370	9	INTRON	INTRON	C11orf24	ENSG00000171067.11	ENST00000304271.11:ENST00000533310.5:ENST00000530166.5:ENST00000527280.1:ENST00000529590.5:ENST00000532534.5:ENST00000532969.1:ENST00000529339.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	360	2	5.00787	6.627834999999999	8.2478	1.33082e-4	1.2723e-4	0.00624469	0.00337571
chr17	80893527	80893606	6812413	0	+	0.607595	(0.58,1]	chr17	687926	3	SS3_PROX	SS3_PROX:INTRON	RPTOR	ENSG00000141564.15	ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	310	2	5.90788	6.627755	7.34763	2.99474e-4	3.23838e-6	0.00982269	2.3183e-4
chr3	13491047	13491147	1414372	0	+	0.38	(0.36,0.39]	chr3	151762	71	INTRON	INTRON	HDAC11	ENSG00000163517.15	ENST00000433119.5:ENST00000446613.6:ENST00000402259.5:ENST00000402271.5:ENST00000295757.8:ENST00000425430.5:ENST00000404040.5:ENST00000404548.5:ENST00000458642.5:ENST00000405478.5:ENST00000405025.5:ENST00000475818.5:ENST00000522202.5:ENST00000418189.5:ENST00000434848.5:ENST00000416248.5:ENST00000455904.5:ENST00000437379.2:ENST00000487585.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	210	2	5.53855	6.6276150000000005	7.71668	0.00432809	6.59626e-4	0.0389438	0.0150896
chr3	72400619	72400719	1831596	0	-	0.36	(0.33,0.36]	chr3	188303	201	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	0	161	2	6.28203	6.627195	6.97236	0.0021433	6.00348e-4	0.0291055	0.00994732
chr10	127428601	127428700	4612234	0	+	0.565657	(0.523,0.58]	chr10	440909	22	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2	protein_coding	protein_coding	protein_coding	protein_coding	0	158	2	6.12478	6.627085	7.12939	0.00829271	3.23178e-5	0.0610772	0.00118877
chr17	49025317	49025417	6750302	0	+	0.46	(0.45,0.485]	chr17	680310	3	SS3_PROX	SS3_PROX:INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2:ENST00000515586.5:ENST00000499130.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	337	2	5.65303	6.62701	7.60099	6.06072e-4	2.13127e-5	0.0144497	8.79457e-4
chr12	124961319	124961418	5537768	0	-	0.373737	(0.36,0.39]	chr12	546181	5	INTRON	INTRON	DHX37	ENSG00000150990.9	ENST00000308736.7:ENST00000544745.2:ENST00000679875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	170	2	5.91828	6.62692	7.33556	0.0158902	3.69172e-5	0.0859576	0.00131447
chr4	87138468	87138567	2081154	0	+	0.383838	(0.36,0.39]	chr4	212308	29	UTR3	UTR3:EXON_MRNA	AFF1	ENSG00000172493.23	ENST00000395146.9:ENST00000544085.6:ENST00000307808.10	protein_coding	protein_coding	protein_coding	protein_coding	3	580	2	4.492	6.626745	8.76149	1.19173e-4	8.54684e-5	0.00513437	0.00312778
chr2	240614791	240614890	1075087	0	+	0.323232	(0.29,0.33]	chr2	116637	74	INTRON	INTRON	CAPN10:GPR35	ENSG00000142330.20:ENSG00000178623.13	ENST00000270364.11:ENST00000319838.10:ENST00000403859.1	protein_coding	protein_coding	protein_coding	protein_coding	0	152	2	6.4845	6.626645	6.76879	0.00381896	1.12201e-4	0.0398603	0.00298349
chr19	4492035	4492135	7193756	0	+	0.58	(0.523,0.58]	chr19	732769	2	SS5_PROX	SS5_PROX:INTRON	HDGFL2	ENSG00000167674.15	ENST00000616600.5:ENST00000621835.4:ENST00000589486.5:ENST00000615225.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	152	2	6.60786	6.626555	6.64525	0.00345115	1.40789e-4	0.037649	0.00351181
chr21	45124729	45124828	7629165	0	+	0.383838	(0.36,0.39]	chr21	797528	34	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5:ENST00000449478.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	155	2	6.55124	6.62584	6.70044	0.0055566	2.25359e-4	0.049265	0.00492301
chr7	111436475	111436575	3686433	0	-	0.36	(0.33,0.36]	chr7	354630	437	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	0	154	2	6.59729	6.6258099999999995	6.65433	0.00427093	2.16624e-4	0.0423709	0.00477756
chr5	132767927	132768027	2761958	0	-	0.53	(0.523,0.58]	chr5	270676	20	INTRON	INTRON	SEPTIN8	ENSG00000164402.14	ENST00000378719.7:ENST00000378721.8:ENST00000296873.11:ENST00000448933.5:ENST00000620483.4:ENST00000378706.5:ENST00000378699.6:ENST00000378701.5:ENST00000458488.2:ENST00000453480.5:ENST00000414594.5:ENST00000371493.7:ENST00000481794.5:ENST00000492490.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	152	2	6.43755	6.62556	6.81357	0.00473049	8.51182e-5	0.0449253	0.00242869
chr16	571643	571738	6368131	0	+	0.494737	(0.485,0.523]	chr16	627950	5	INTRON	INTRON	PIGQ	ENSG00000007541.17	ENST00000293874.2:ENST00000409527.6:ENST00000321878.10:ENST00000439574.1:ENST00000422307.6:ENST00000636657.1:ENST00000026218.9:ENST00000470411.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	153	2	6.53888	6.62524	6.7116	0.00281636	2.02788e-4	0.0336649	0.0045746
chr16	14177845	14177945	6400466	0	+	0.42	(0.419,0.45]	chr16	632185	75	INTRON	INTRON	MRTFB	ENSG00000186260.17	ENST00000571589.6:ENST00000574998.5:ENST00000574045.5:ENST00000318282.9:ENST00000575768.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	160	2	6.38214	6.62514	6.86814	0.00384173	6.07209e-4	0.0399957	0.0100293
chr7	66243068	66243168	3379928	0	+	0.37	(0.36,0.39]	chr7	326242	14	INTRON	INTRON	TPST1	ENSG00000169902.15	ENST00000304842.6:ENST00000480281.5:ENST00000649664.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	164	2	6.22055	6.625095	7.02964	0.00237667	8.14665e-4	0.0307601	0.0123172
chr4	886276	886375	2178465	0	-	0.606061	(0.58,1]	chr4	220626	6	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	147	2	6.57822	6.62434	6.67046	0.00135763	7.66421e-5	0.0224546	0.00224403
chr9	130845989	130846089	4255550	0	+	0.5	(0.485,0.523]	chr9	405266	101	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	0	152	2	6.43798	6.623965	6.80995	0.00469187	9.11162e-5	0.0447158	0.00255001
chr9	95284827	95284927	4340657	0	-	0.46	(0.45,0.485]	chr9	414892	187	INTRON	INTRON	FANCC	ENSG00000158169.14	ENST00000289081.8:ENST00000375305.6:ENST00000490972.7:ENST00000696261.1:ENST00000636777.1:ENST00000474949.1:ENST00000647778.1:ENST00000433829.1:ENST00000647882.1:ENST00000650176.1:ENST00000648415.1:ENST00000696262.1:ENST00000649611.1:ENST00000696263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	153	2	6.46883	6.62383	6.77883	0.00516809	1.23522e-4	0.0472296	0.00321265
chr8	89924967	89925060	3855586	0	+	0.397849	(0.39,0.419]	chr8	370072	6	CDS	CDS:EXON_MRNA	OSGIN2	ENSG00000164823.11	ENST00000647849.1:ENST00000297438.6:ENST00000451899.7	protein_coding	protein_coding	protein_coding	protein_coding	0	171	2	5.88826	6.623475	7.35869	0.0169925	3.48906e-5	0.0889149	0.00126097
chr2	11789347	11789445	722492	0	+	0.520408	(0.485,0.523]	chr2	84431	5	INTRON	INTRON	LPIN1	ENSG00000134324.12	ENST00000449576.6:ENST00000425416.6:ENST00000396097.5:ENST00000396099.5:ENST00000256720.6:ENST00000674199.1:ENST00000404113.6:ENST00000464953.2:ENST00000454151.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	153	2	6.51742	6.62277	6.72812	0.00272951	2.15808e-4	0.0331786	0.00477041
chr18	79145950	79146050	7097709	0	+	0.62	(0.58,1]	chr18	722822	17	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000586672.5:ENST00000590271.5:ENST00000490210.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	373	2	4.87058	6.6226650000000005	8.37475	9.56193e-4	1.40693e-7	0.0185029	2.89215e-5
chr17	1561098	1561198	6830760	0	-	0.47	(0.45,0.485]	chr17	690605	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PITPNA	ENSG00000174238.16	ENST00000313486.12:ENST00000575288.5:ENST00000576722.5:ENST00000576761.5:ENST00000576010.6:ENST00000573231.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	156	2	6.41491	6.62243	6.82995	0.00267274	0.00034885200000000003	0.0327654	0.00674746
chr11	72999789	72999889	5072550	0	-	0.43	(0.419,0.45]	chr11	493634	103	INTRON	INTRON	FCHSD2	ENSG00000137478.15	ENST00000409418.9:ENST00000311172.11:ENST00000409314.5:ENST00000458644.6:ENST00000409853.5:ENST00000422375.1	protein_coding	protein_coding	protein_coding	protein_coding	1	356	2	5.77649	6.622425	7.46836	0.00132398	2.37797e-5	0.0222129	9.55205e-4
chr6	154500270	154500370	3297446	0	-	0.41	(0.39,0.419]	chr6	319123	219	INTRON	INTRON	CNKSR3	ENSG00000153721.19	ENST00000607772.6	protein_coding	protein_coding	protein_coding	protein_coding	1	347	2	5.49711	6.6223399999999994	7.74757	6.44652e-4	4.80736e-5	0.0149116	0.00160016
chr7	133686922	133687022	3489511	0	+	0.4	(0.39,0.419]	chr7	336701	564	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	156	2	6.52237	6.62226	6.72215	0.00423322	3.69587e-4	0.0422099	0.00704866
chr10	132765946	132766046	4619132	0	+	0.53	(0.523,0.58]	chr10	441206	1	SS5_PROX	SS5_PROX:INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000445580.1	protein_coding	protein_coding	protein_coding	protein_coding	0	153	2	6.31171	6.621919999999999	6.93213	0.00594629	5.9384e-5	0.0506158	0.00185705
chr20	49662199	49662299	7575658	0	-	0.42	(0.419,0.45]	chr20	791530	51	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	0	156	2	6.59547	6.6216349999999995	6.6478	0.00559992	3.45753e-4	0.0493906	0.00672667
chrX	2382561	2382660	7967669	0	-	0.454545	(0.45,0.485]	chrX	834355	442	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	159	2	6.29509	6.62094	6.94679	0.00214762	4.85904e-4	0.0291055	0.00857996
chr22	50679728	50679828	7754966	0	+	0.51	(0.485,0.523]	chr22	812715	3	SS5_PROX	SS5_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	152	2	6.58086	6.620865	6.66087	0.00309962	1.79455e-4	0.0355173	0.00418827
chr1	42849921	42850000	105837	0	+	0.379747	(0.36,0.39]	chr1	12814	2	SS5_PROX	SS5_PROX:INTRON	ZNF691	ENSG00000164011.18	ENST00000372502.5:ENST00000372508.7:ENST00000651192.1:ENST00000372507.5:ENST00000372506.5:ENST00000372504.5:ENST00000397034.3:ENST00000372503.2	protein_coding	protein_coding	protein_coding	protein_coding	0	155	2	6.58457	6.6208100000000005	6.65705	0.00462176	3.09569e-4	0.0442699	0.00622124
chr7	47472910	47473010	3588537	0	-	0.62	(0.58,1]	chr7	346123	198	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	147	2	6.5343	6.6198049999999995	6.70531	0.00125905	8.82891e-5	0.0215793	0.00248664
chr3	120078874	120078974	1886969	0	-	0.37	(0.36,0.39]	chr3	191436	42	INTRON	INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000650344.2:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000677128.1:ENST00000677530.1:ENST00000677034.1:ENST00000679131.1:ENST00000676743.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	155	2	6.56432	6.61914	6.67396	0.00448681	3.27085e-4	0.0436138	0.00645438
chr8	143321486	143321586	4095542	0	-	0.68	(0.58,1]	chr8	389124	1	SS3_PROX	SS3_PROX:INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	161	2	5.86491	6.61889	7.37287	0.00707578	5.25408e-6	0.0558168	3.26574e-4
chr7	74495907	74496007	3391786	0	+	0.62	(0.58,1]	chr7	327343	414	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	0	146	2	6.42078	6.6188400000000005	6.8169	0.00230938	3.50609e-5	0.0302623	0.00126332
chr16	81615707	81615806	6509453	0	+	0.444444	(0.419,0.45]	chr16	645921	48	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	593	2	4.86775	6.61843	8.36911	0.00121818	2.04898e-6	0.0211568	1.69433e-4
chr1	65166319	65166419	158634	0	+	0.48	(0.45,0.485]	chr1	18055	3	SS5_PROX	SS5_PROX:INTRON	AK4	ENSG00000162433.15	ENST00000545314.5:ENST00000497030.5:ENST00000470888.6:ENST00000546702.5:ENST00000395334.6:ENST00000327299.8:ENST00000474968.5:ENST00000479060.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	156	2	6.39173	6.61841	6.84509	0.00259845	3.72107e-4	0.0322672	0.00707906
chr12	132531275	132531374	5352928	0	+	0.626263	(0.58,1]	chr12	523670	29	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	304	2	5.69305	6.618175000000001	7.5433	1.90447e-4	6.9672e-6	0.00778805	3.99493e-4
chr7	135167408	135167508	3717084	0	-	0.51	(0.485,0.523]	chr7	357024	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CYREN	ENSG00000122783.17	ENST00000459937.5:ENST00000617987.1:ENST00000620897.4:ENST00000393114.8:ENST00000424142.5:ENST00000430372.1:ENST00000481410.1:ENST00000483029.2:ENST00000472428.5:ENST00000477820.1:ENST00000488161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	152	2	6.35532	6.6171050000000005	6.87889	0.00545609	7.40532e-5	0.0486984	0.00219184
chr2	216030989	216031089	1369594	0	-	0.43	(0.419,0.45]	chr2	145850	175	INTRON	INTRON	MREG:PECR	ENSG00000118242.16:ENSG00000115425.14	ENST00000439791.5:ENST00000424992.5:ENST00000420348.1:ENST00000442122.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	1957	2	5.27786	6.616995	7.95613	1.29429e-5	7.26252e-6	0.00162532	6.16656e-4
chr17	80024901	80025001	6982165	0	-	0.52	(0.485,0.523]	chr17	713081	109	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7	protein_coding	protein_coding	protein_coding	protein_coding	0	151	2	6.4776	6.6168	6.756	0.00436205	1.07056e-4	0.0427656	0.00288045
chr18	6042340	6042440	7110134	0	-	0.51	(0.485,0.523]	chr18	723828	97	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000400105.6:ENST00000317931.12:ENST00000400104.7	protein_coding	protein_coding	protein_coding	protein_coding	1	369	2	4.8844	6.6159	8.3474	1.93157e-4	1.03091e-4	0.0056665	0.00441241
chr8	143321886	143321980	4095546	0	-	0.638298	(0.58,1]	chr8	389125	1	INTRON	INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	149	2	6.1942	6.615830000000001	7.03746	0.00368616	1.67087e-5	0.0389784	7.38685e-4
chr21	45500142	45500241	7631306	0	+	0.565657	(0.523,0.58]	chr21	797812	21	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	0	159	2	6.235	6.615825	6.99665	0.00164293	4.59688e-4	0.0250898	0.00821903
chr11	17910104	17910204	5014338	0	-	0.47	(0.45,0.485]	chr11	484610	315	INTRON	INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528369.5:ENST00000528200.5:ENST00000529440.5:ENST00000529151.5:ENST00000532546.5:ENST00000525920.5:ENST00000532265.5:ENST00000533241.1:ENST00000525168.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	152	2	6.50739	6.615795	6.7242	0.00482293	1.44769e-4	0.0453395	0.00359413
chr2	134369704	134369804	897939	0	+	0.36	(0.33,0.36]	chr2	101263	69	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	0	153	2	6.44694	6.615214999999999	6.78349	0.00558656	1.50436e-4	0.0493906	0.00368673
chrX	9492895	9492994	7842723	0	+	0.464646	(0.45,0.485]	chrX	822398	271	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	0	155	2	6.23609	6.6151599999999995	6.99423	0.00778782	6.5472e-5	0.0590114	0.00199814
chr16	89221736	89221821	6523479	0	+	0.505882	(0.485,0.523]	chr16	647075	2	SS3_PROX	SS3_PROX:INTRON	ZNF778	ENSG00000170100.14	ENST00000433976.7:ENST00000620195.4:ENST00000564906.5:ENST00000567651.5:ENST00000306502.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	332	2	5.8205	6.614895000000001	7.40929	7.18613e-4	1.03229e-5	0.0158219	5.25841e-4
chr1	113449342	113449442	211783	0	+	0.35	(0.33,0.36]	chr1	23359	450	INTRON	INTRON	MAGI3	ENSG00000081026.19	ENST00000307546.14:ENST00000369617.8:ENST00000369615.5:ENST00000369611.4:ENST00000486456.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	154	2	6.51246	6.61478	6.7171	0.00343661	3.21298e-4	0.0375956	0.0063695
chr12	62771245	62771345	5445755	0	-	0.45	(0.419,0.45]	chr12	535900	333	INTRON	INTRON	PPM1H	ENSG00000111110.12	ENST00000228705.7:ENST00000551519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	155	2	6.61339	6.614275	6.61516	0.0059347	3.27987e-4	0.0506158	0.00646148
chr1	149211584	149211684	236924	0	+	0.47	(0.45,0.485]	chr1	26386	204	INTRON	INTRON	ENSG00000274265	ENSG00000274265.5	ENST00000668239.1:ENST00000662742.1:ENST00000667654.1:ENST00000611769.4:ENST00000664903.1	lncRNA	lncRNA	lncRNA	lncRNA	0	153	2	6.52554	6.614175	6.70281	0.00338129	2.5568e-4	0.0371948	0.00541562
chr6	1737779	1737879	3080249	0	-	0.42	(0.419,0.45]	chr6	299476	109	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	352	2	5.71259	6.614155	7.51572	0.00121474	2.87336e-5	0.0211053	0.0010908
chr7	158916481	158916578	3523154	0	+	0.43299	(0.419,0.45]	chr7	340293	18	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	156	2	6.51388	6.61407	6.71426	0.0050028	4.29619e-4	0.0463896	0.00783248
chr2	65404473	65404573	1171900	0	-	0.35	(0.33,0.36]	chr2	127582	239	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	0	153	2	6.42699	6.61401	6.80103	0.00578704	1.4311e-4	0.0501412	0.00355964
chr12	111596149	111596249	5500366	0	-	0.52	(0.485,0.523]	chr12	541405	314	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	441	2	5.02039	6.613759999999999	8.20713	1.3861e-4	3.02283e-5	0.00653779	0.00113492
chr6	1819051	1819151	3081063	0	-	0.36	(0.33,0.36]	chr6	299482	761	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	549	2	5.01857	6.613175	8.20778	1.90699e-4	2.08549e-5	0.00779123	8.64603e-4
chr2	158496792	158496892	935348	0	+	0.41	(0.39,0.419]	chr2	103367	381	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	353	2	5.22329	6.61305	8.00281	3.95352e-4	1.07317e-4	0.0113656	0.00288468
chr20	417342	417425	7414585	0	+	0.53012	(0.523,0.58]	chr20	772329	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBCK1	ENSG00000125826.21	ENST00000411647.5:ENST00000382214.7:ENST00000415942.5:ENST00000640614.1:ENST00000441733.5:ENST00000353660.7:ENST00000356286.10:ENST00000382181.2:ENST00000414880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	328	2	5.747	6.612925000000001	7.47885	6.30946e-4	1.24379e-5	0.0147478	5.98526e-4
chr5	648614	648713	2378768	0	+	0.585859	(0.58,1]	chr5	237646	3	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	318	2	6.11571	6.6119699999999995	7.10823	5.16402e-4	1.52799e-6	0.0132022	0.00013916500000000001
chr13	112973042	112973142	5655351	0	+	0.62	(0.58,1]	chr13	555120	32	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	160	2	6.06394	6.611665	7.15939	4.60046e-4	3.80904e-4	0.0123493	0.00721291
chr10	18564962	18565062	4642378	0	-	0.43	(0.419,0.45]	chr10	443321	126	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	155	2	6.5755	6.61165	6.6478	0.00559992	3.64701e-4	0.0493906	0.00699922
chr20	44402300	44402376	7482936	0	+	0.513158	(0.485,0.523]	chr20	779636	1	SS3_PROX	SS3_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000682427.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	545	2	4.47254	6.61155	8.75056	0.0015894	1.74022e-7	0.0246035	3.32116e-5
chr10	18552570	18552670	4642254	0	-	0.42	(0.419,0.45]	chr10	443321	2	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	160	2	6.31147	6.61137	6.91127	0.00356503	7.29222e-4	0.0383188	0.0113963
chr10	18566561	18566661	4642394	0	-	0.4	(0.39,0.419]	chr10	443321	142	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	154	2	6.584	6.61129	6.63858	0.00489861	3.12789e-4	0.0457614	0.00625974
chr6	44442275	44442375	2922329	0	+	0.37	(0.36,0.39]	chr6	287790	62	INTRON	INTRON	CDC5L	ENSG00000096401.8	ENST00000371477.4	protein_coding	protein_coding	protein_coding	protein_coding	0	161	2	6.2462	6.61116	6.97612	0.00261876	7.62178e-4	0.0324697	0.0117554
chr17	44109728	44109828	6910963	0	-	0.54	(0.523,0.58]	chr17	703517	155	INTRON	INTRON	HDAC5	ENSG00000108840.16	ENST00000225983.10:ENST00000682912.1:ENST00000336057.9:ENST00000586802.5:ENST00000588703.5:ENST00000587135.1:ENST00000591714.5	protein_coding	protein_coding	protein_coding	protein_coding	0	170	2	5.9758	6.61109	7.24638	0.00100536	9.36996e-4	0.0190855	0.0135546
chr12	112011316	112011415	5501714	0	-	0.383838	(0.36,0.39]	chr12	541569	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	TMEM116	ENSG00000198270.13	ENST00000550831.7:ENST00000552374.7:ENST00000355445.7:ENST00000547878.6:ENST00000549537.6:ENST00000552801.6:ENST00000548283.6:ENST00000551297.6:ENST00000550020.6:ENST00000546537.6:ENST00000552839.6:ENST00000552800.2:ENST00000437003.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	158	2	6.34447	6.610935	6.8774	0.00312796	5.89187e-4	0.0356998	0.00981079
chr4	6665405	6665504	2186191	0	-	0.525253	(0.523,0.58]	chr4	221877	30	INTRON	INTRON	LINC02482	ENSG00000251580.3	ENST00000647523.2:ENST00000667300.1	lncRNA	lncRNA	lncRNA	lncRNA	0	152	2	6.28963	6.61088	6.93213	0.00618741	5.9384e-5	0.0519442	0.00185705
chr10	18569259	18569359	4642421	0	-	0.41	(0.39,0.419]	chr10	443321	169	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	156	2	6.43589	6.610785	6.78568	0.00378521	4.66094e-4	0.0396337	0.00828434
chr3	13374373	13374463	1692592	0	-	0.5	(0.485,0.523]	chr3	176730	1	INTRON	INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000420141.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	154	2	6.19817	6.61054	7.02291	0.00723584	4.77916e-5	0.0565323	0.00159602
chr1	16599488	16599588	406017	0	-	0.5	(0.485,0.523]	chr1	46792	41	INTRON	INTRON	NBPF1	ENSG00000219481.11	ENST00000430580.6:ENST00000392963.5:ENST00000420513.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	367	2	4.8844	6.6105350000000005	8.33667	1.93157e-4	1.05459e-4	0.00573959	0.00441241
chr20	44403389	44403487	7482949	0	+	0.561224	(0.523,0.58]	chr20	779645	1	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	151	2	6.35489	6.610234999999999	6.86558	0.00549977	7.2723e-5	0.0489559	0.00216169
chr16	81542382	81542482	6508717	0	+	0.57	(0.523,0.58]	chr16	645911	465	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	151	2	6.54248	6.610015000000001	6.67755	0.00302793	1.90498e-4	0.0350226	0.0043642
chr17	17727957	17728057	6689315	0	+	0.54	(0.523,0.58]	chr17	671344	34	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	151	2	6.54248	6.610015000000001	6.67755	0.00302793	1.90498e-4	0.0350226	0.0043642
chr19	18840180	18840280	7224776	0	+	0.55	(0.523,0.58]	chr19	739340	65	INTRON	INTRON	UPF1	ENSG00000005007.13	ENST00000262803.10:ENST00000599848.5:ENST00000601981.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	155	2	6.33678	6.610015000000001	6.88325	0.00204616	3.44853e-4	0.0283511	0.00672121
chr6	129626052	129626152	3259072	0	-	0.41	(0.39,0.419]	chr6	315400	68	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	0	154	2	6.56375	6.609715	6.65568	0.00475491	3.30465e-4	0.0450109	0.00649658
chr3	30636046	30636146	1433387	0	+	0.39	(0.36,0.39]	chr3	153006	28	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4:ENST00000673250.1:ENST00000672866.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	637	2	4.79964	6.60957	8.4195	1.68416e-4	3.08115e-5	0.00725661	0.00115172
chr7	47472710	47472810	3588535	0	-	0.56	(0.523,0.58]	chr7	346123	196	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	150	2	6.49658	6.609534999999999	6.72249	0.00424382	1.11891e-4	0.0422099	0.00298349
chr19	56596027	56596127	7295039	0	+	0.53	(0.523,0.58]	chr19	751227	2	INTRON	INTRON	ZNF71	ENSG00000197951.10	ENST00000328070.10:ENST00000599599.7:ENST00000594944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	150	2	6.53464	6.60951	6.68438	0.00395533	1.2535e-4	0.0406092	0.00324328
chr15	20441840	20441940	6202465	0	-	0.43	(0.419,0.45]	chr15	610287	8	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000424611.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	156	2	6.3038	6.609105	6.91441	0.00990101	1.45031e-4	0.0671959	0.00359413
chr12	49372887	49372987	5225222	0	+	0.45	(0.419,0.45]	chr12	507159	12	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549538.5:ENST00000549412.5:ENST00000550643.5:ENST00000548654.5:ENST00000548710.5:ENST00000549179.5:ENST00000548377.5:ENST00000549298.5:ENST00000552918.6:ENST00000549375.5:ENST00000553127.5:ENST00000321898.10:ENST00000551540.5:ENST00000548777.5:ENST00000552171.1:ENST00000547865.5:ENST00000548388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	159	2	6.33542	6.60904	6.8826599999999996	0.00374639	6.85495e-4	0.0393941	0.0108846
chr2	27481360	27481460	1112874	0	-	0.43	(0.419,0.45]	chr2	121777	1	SS3_PROX	SS3_PROX:INTRON	IFT172	ENSG00000138002.16	ENST00000675690.1:ENST00000260570.8:ENST00000507184.5:ENST00000675410.1:ENST00000674932.1:ENST00000676119.1:ENST00000674824.1:ENST00000674701.1:ENST00000675963.1:ENST00000675618.1:ENST00000675729.1:ENST00000511842.5:ENST00000359466.10:ENST00000416524.2:ENST00000675728.1:ENST00000676300.1:ENST00000476264.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	170	2	6.04724	6.60859	7.16994	0.00226312	0.00142238	0.0300628	0.0181715
chr6	170399765	170399864	3076577	0	+	0.434343	(0.419,0.45]	chr6	299192	38	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	4	1654	2	6.38093	6.6082350000000005	6.83554	1.59914e-4	1.02002e-7	0.00707846	2.35652e-5
chr4	87000654	87000754	2079745	0	+	0.38	(0.36,0.39]	chr4	212193	267	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	157	2	6.36802	6.607965	6.84791	0.00329741	5.53634e-4	0.0368376	0.00941672
chr5	1466152	1466248	2609385	0	-	0.541667	(0.523,0.58]	chr5	259790	20	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000503252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	185	2	5.73609	6.60747	7.47885	0.0017613	6.30946e-4	0.0211077	0.0147478
chr7	2278904	2279004	3532965	0	-	0.61	(0.58,1]	chr7	341203	2	INTRON	INTRON	SNX8	ENSG00000106266.11	ENST00000222990.8:ENST00000435060.5:ENST00000457286.5:ENST00000435336.5:ENST00000494722.1:ENST00000447136.1:ENST00000419693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	147	2	6.44222	6.6074	6.77258	0.00108768	1.18459e-4	0.0198535	0.00311099
chr20	6039254	6039354	7426019	0	+	0.37	(0.36,0.39]	chr20	773649	22	UTR3	UTR3:EXON_MRNA	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9	protein_coding	protein_coding	protein_coding	protein_coding	0	153	2	6.53282	6.60729	6.68176	0.00573632	2.3726e-4	0.0499133	0.0051158
chr10	132573941	132574041	4617200	0	+	0.54	(0.523,0.58]	chr10	441139	354	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	150	2	6.41733	6.60657	6.79581	0.00490887	8.98003e-5	0.0457614	0.00252158
chr10	18571457	18571557	4642443	0	-	0.44	(0.419,0.45]	chr10	443321	191	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	158	2	6.35897	6.60622	6.85347	0.00394037	6.44911e-4	0.0406053	0.0104285
chr10	18565661	18565761	4642385	0	-	0.4	(0.39,0.419]	chr10	443321	133	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	155	2	6.458	6.60613	6.75426	0.00400086	4.39359e-4	0.0409634	0.00798319
chr16	78887130	78887230	6503290	0	+	0.37	(0.36,0.39]	chr16	645717	1068	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	162	2	6.02754	6.606045	7.18455	0.0133452	5.73017e-5	0.0789398	0.00181133
chr2	233151961	233152060	1058139	0	+	0.474747	(0.45,0.485]	chr2	115096	40	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6	protein_coding	protein_coding	protein_coding	protein_coding	0	151	2	6.46883	6.605734999999999	6.74264	0.00516809	1.37232e-4	0.0472296	0.00346319
chr16	85426620	85426720	6517337	0	+	0.52	(0.485,0.523]	chr16	646391	673	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	166	2	6.03396	6.605145	7.17633	0.00114421	8.35707e-4	0.0204418	0.012554
chr12	111513539	111513639	5499525	0	-	0.37	(0.36,0.39]	chr12	541346	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000550236.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000481331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	154	2	6.33445	6.604725	6.875	0.00804615	1.38592e-4	0.0600099	0.00347765
chr6	169621152	169621252	3304068	0	-	0.41	(0.39,0.419]	chr6	319826	71	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	347	2	5.77051	6.603875	7.43724	0.00115704	2.12273e-5	0.0205679	8.76147e-4
chr22	42986933	42987033	7824002	0	-	0.43	(0.419,0.45]	chr22	820626	272	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	155	2	6.32522	6.60374	6.88226	0.00956261	1.58518e-4	0.0658012	0.00384084
chr19	5817594	5817694	7195562	0	+	0.5	(0.485,0.523]	chr19	733105	118	INTRON	INTRON	NRTN	ENSG00000171119.3	ENST00000303212.3	protein_coding	protein_coding	protein_coding	protein_coding	0	150	2	6.58086	6.603445000000001	6.62603	0.00330946	1.79455e-4	0.0368376	0.00418827
chr2	239372300	239372400	1392435	0	-	0.51	(0.485,0.523]	chr2	148759	190	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	326	2	5.67905	6.60316	7.52727	5.66104e-4	1.6292e-5	0.0138751	7.25583e-4
chr8	22200160	22200252	3769782	0	+	0.532609	(0.523,0.58]	chr8	362645	4	INTRON	INTRON	BMP1	ENSG00000168487.20	ENST00000354870.5:ENST00000520970.5:ENST00000518913.5:ENST00000520626.6:ENST00000520982.5:ENST00000306385.10:ENST00000306349.13:ENST00000471755.5:ENST00000483364.5:ENST00000521385.5:ENST00000522332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	151	2	6.28963	6.602705	6.91578	0.00618741	6.24234e-5	0.0519442	0.00192539
chr1	17673785	17673885	54949	0	+	0.55	(0.523,0.58]	chr1	5603	88	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	151	2	6.47712	6.602405	6.72769	0.00275419	2.30436e-4	0.0332418	0.00498593
chr12	69498536	69498636	5260925	0	+	0.35	(0.33,0.36]	chr12	513023	65	INTRON	INTRON	FRS2	ENSG00000166225.9	ENST00000547219.5:ENST00000550316.5:ENST00000547414.5:ENST00000548154.5:ENST00000549921.6:ENST00000550389.5:ENST00000550937.5:ENST00000549092.5:ENST00000550169.5	protein_coding	protein_coding	protein_coding	protein_coding	0	152	2	6.38626	6.60231	6.81836	0.00621741	1.36209e-4	0.052147	0.00344204
chr14	95408659	95408759	6048863	0	-	0.59	(0.58,1]	chr14	593438	15	UTR3	UTR3:EXON_MRNA	SYNE3	ENSG00000176438.13	ENST00000682763.1:ENST00000557275.5	protein_coding	protein_coding	protein_coding	protein_coding	0	144	2	6.5414	6.60182	6.66224	0.00179018	5.8343e-5	0.0262802	0.00183149
chr10	102647417	102647516	4576498	0	+	0.515152	(0.485,0.523]	chr10	437280	12	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	150	2	6.56002	6.601785	6.64355	0.00320229	1.90696e-4	0.0361639	0.0043642
chr1	204082077	204082177	322140	0	+	0.55	(0.523,0.58]	chr1	36272	35	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1:ENST00000528591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	325	2	5.45789	6.601649999999999	7.74541	3.66506e-4	3.14941e-5	0.0109836	0.00116717
chr2	233176864	233176964	1058402	0	+	0.45	(0.419,0.45]	chr2	115145	2	SS3_PROX	SS3_PROX:INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493632.5:ENST00000465281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	154	2	6.55525	6.6015250000000005	6.6478	0.00559992	3.84925e-4	0.0493906	0.00726694
chr1	20775517	20775585	414136	0	-	0.323529	(0.29,0.33]	chr1	48421	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000419948.5:ENST00000424732.5:ENST00000417710.5:ENST00000487117.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	326	2	5.55931	6.601285	7.64326	3.76232e-4	2.56735e-5	0.011139	0.0010086
chr13	39018442	39018541	5692009	0	-	0.40404	(0.39,0.419]	chr13	558682	5	INTRON	INTRON	PROSER1	ENSG00000120685.20	ENST00000352251.8:ENST00000625998.2:ENST00000484434.3:ENST00000602512.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	154	2	6.47978	6.600965	6.72215	0.00423322	4.14458e-4	0.0422099	0.00767522
chr19	33422334	33422434	7365061	0	-	0.38	(0.36,0.39]	chr19	763415	83	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000590731.6:ENST00000609145.5:ENST00000588719.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	153	2	6.37636	6.600585000000001	6.82481	0.00749622	1.5953e-4	0.0576451	0.00385227
chr12	57342381	57342481	5440909	0	-	0.53	(0.523,0.58]	chr12	535502	10	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	0	149	2	6.51574	6.60006	6.68438	0.00409625	1.2535e-4	0.0413652	0.00324328
chr5	14348399	14348499	2385416	0	+	0.42	(0.419,0.45]	chr5	238535	113	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000512070.6:ENST00000509967.6:ENST00000513206.5:ENST00000515144.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	154	2	6.53472	6.599715	6.66471	0.00544202	4.06527e-4	0.0486855	0.00755833
chr17	43543179	43543279	6909600	0	-	0.58	(0.523,0.58]	chr17	703271	63	INTRON	INTRON	ETV4	ENSG00000175832.13	ENST00000538265.5:ENST00000319349.10:ENST00000393664.6:ENST00000545954.5:ENST00000545089.5:ENST00000591713.5:ENST00000590236.5:ENST00000585508.5:ENST00000587151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	519	2	4.89458	6.59906	8.30354	1.14562e-4	2.00855e-5	0.00596205	8.43743e-4
chr7	155737329	155737429	3519460	0	+	0.45	(0.419,0.45]	chr7	339833	4	SS3_PROX	SS3_PROX:INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	468	2	4.91333	6.598955	8.28458	2.90479e-4	7.69382e-5	0.00968422	0.00225113
chrY	12767582	12767682	8137358	0	+	0.41	(0.39,0.419]	chrY	847935	66	INTRON	INTRON	USP9Y	ENSG00000114374.13	ENST00000651177.1:ENST00000338981.7:ENST00000426564.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	170	2	5.9965	6.59892	7.20134	0.00179028	0.00145172	0.0262802	0.0184691
chr10	24500280	24500379	4467521	0	+	0.424242	(0.419,0.45]	chr10	427307	47	INTRON	INTRON	KIAA1217	ENSG00000120549.19	ENST00000376462.5:ENST00000376452.7:ENST00000430453.6:ENST00000458595.5:ENST00000376456.8:ENST00000376454.8:ENST00000438429.5:ENST00000696626.1:ENST00000307544.10:ENST00000376451.4:ENST00000396445.5:ENST00000396446.5:ENST00000460373.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	153	2	6.50493	6.598145000000001	6.69136	0.00711588	2.67131e-4	0.0560048	0.00557451
chr1	12585740	12585839	402460	0	-	0.646465	(0.58,1]	chr1	46222	47	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	151	2	6.23832	6.597855	6.95739	7.23847e-4	2.24165e-4	0.0158739	0.00490779
chr20	18139643	18139741	7441530	0	+	0.387755	(0.36,0.39]	chr20	774399	7	INTRON	INTRON	KAT14:PET117	ENSG00000149474.15:ENSG00000232838.4	ENST00000677174.1:ENST00000677573.1:ENST00000377681.8:ENST00000676992.1:ENST00000678777.1:ENST00000688188.1:ENST00000432901.4:ENST00000677266.1:ENST00000677610.1:ENST00000676935.1:ENST00000435364.8:ENST00000464792.2:ENST00000678772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	152	2	6.49527	6.597855	6.70044	0.00611969	2.25359e-4	0.0517362	0.00492301
chr2	3296698	3296798	1081074	0	-	0.52	(0.485,0.523]	chr2	117633	140	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	324	2	5.56751	6.597525	7.62754	4.61541e-4	2.32773e-5	0.0123746	9.36813e-4
chr17	18039407	18039464	6690640	0	+	0.473684	(0.45,0.485]	chr17	671457	1	UTR5	UTR5:EXON_MRNA	GID4	ENSG00000141034.10	ENST00000268719.9:ENST00000376345.3	protein_coding	protein_coding	protein_coding	protein_coding	0	165	2	6.0506	6.596915	7.14323	0.00147887	9.38528e-4	0.023604	0.0135546
chr16	16016621	16016721	6406673	0	+	0.48	(0.45,0.485]	chr16	633027	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	150	2	6.48824	6.5968800000000005	6.70552	0.00499158	1.52809e-4	0.0463896	0.00372909
chr10	79175516	79175616	4533112	0	+	0.56	(0.523,0.58]	chr10	432438	130	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	354	2	4.95186	6.59674	8.24162	1.5208e-4	1.30529e-4	0.00633355	0.00371617
chr6	158342866	158342966	3061950	0	+	0.37	(0.36,0.39]	chr6	297592	282	INTRON	INTRON	ENSG00000274023:TULP4	ENSG00000274023.1:ENSG00000130338.13	ENST00000619713.1:ENST00000367097.8:ENST00000367094.6:ENST00000616856.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	0	156	2	6.34447	6.59619	6.84791	0.00329741	5.89187e-4	0.0368376	0.00981079
chr6	169650553	169650650	3304369	0	-	0.556701	(0.523,0.58]	chr6	319869	9	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	149	2	6.58447	6.596164999999999	6.60786	0.00345115	1.68436e-4	0.037649	0.00400681
chr16	50620901	50621001	6452137	0	+	0.49	(0.485,0.523]	chr16	639912	49	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	2	545	2	4.36982	6.596069999999999	8.82232	0.0019544	1.36446e-7	0.0276777	2.8448e-5
chr12	132536949	132537049	5352985	0	+	0.65	(0.58,1]	chr12	523670	86	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	2	401	2	5.06965	6.596055	8.12246	4.83056e-5	1.21258e-5	0.00382447	5.89258e-4
chr7	40532503	40532603	3357847	0	+	0.46	(0.45,0.485]	chr7	324373	331	INTRON	INTRON	SUGCT	ENSG00000175600.16	ENST00000335693.9:ENST00000401647.7:ENST00000628514.3	protein_coding	protein_coding	protein_coding	protein_coding	0	150	2	6.44916	6.5959	6.74264	0.00535292	1.37232e-4	0.0480663	0.00346319
chr22	25487724	25487824	7701421	0	+	0.53	(0.523,0.58]	chr22	805972	262	INTRON	INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000686640.1:ENST00000509460.3:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	173	2	5.8779	6.595745	7.31359	0.00121652	8.79392e-4	0.0176886	0.0162693
chr10	28559733	28559833	4469682	0	+	0.44	(0.419,0.45]	chr10	427649	213	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	154	2	6.32522	6.595565000000001	6.86591	0.00956261	1.65832e-4	0.0658012	0.00396002
chr6	3145857	3145956	2828597	0	+	0.606061	(0.58,1]	chr6	277604	50	INTRON	INTRON	BPHL	ENSG00000137274.13	ENST00000434640.5:ENST00000430655.6:ENST00000424847.6:ENST00000433912.5:ENST00000380379.10:ENST00000490918.5:ENST00000380375.4:ENST00000488487.2:ENST00000423798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	168	2	5.86553	6.595465	7.3254	6.8352e-4	3.15151e-4	0.0108717	0.0100952
chr7	152403745	152403845	3737168	0	-	0.44	(0.419,0.45]	chr7	359244	447	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	160	2	6.23716	6.59516	6.95316	0.00331448	8.82327e-4	0.0368376	0.0129974
chr15	68207947	68208043	6311212	0	-	0.520833	(0.485,0.523]	chr15	622150	11	UTR3	UTR3:EXON_MRNA	CLN6	ENSG00000128973.13	ENST00000249806.11:ENST00000638076.1:ENST00000636964.1:ENST00000565471.6:ENST00000637329.1:ENST00000567060.5:ENST00000566347.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	158	2	5.99474	6.594865	7.19499	0.0103305	2.80995e-5	0.0684871	0.00107401
chr9	114203702	114203802	4226189	0	+	0.5	(0.485,0.523]	chr9	400776	73	INTRON	INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8:ENST00000451716.5:ENST00000494090.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	329	2	5.84279	6.594635	7.34648	8.15285e-4	9.6034e-6	0.016997	4.98808e-4
chr2	3221739	3221839	1080318	0	-	0.5	(0.485,0.523]	chr2	117609	71	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000482570.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	164	2	5.8513	6.5939049999999995	7.33651	0.0131886	1.80479e-5	0.0785398	7.82415e-4
chr8	38769394	38769493	3802249	0	+	0.525253	(0.523,0.58]	chr8	365828	116	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	1142	2	6.32625	6.59375	6.86125	2.69932e-5	3.71481e-7	0.00294696	5.4727e-5
chr16	29273712	29273812	6433574	0	+	0.46	(0.45,0.485]	chr16	636745	216	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	2	460	2	4.7110900000000004	6.593615	8.47614	1.02998e-4	9.35176e-5	0.0056665	0.00260506
chr15	20441341	20441441	6202460	0	-	0.68	(0.58,1]	chr15	610287	3	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000424611.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	148	2	6.3182	6.59307	6.86794	8.82366e-4	1.74994e-4	0.0176886	0.00410754
chr20	36857677	36857777	7557078	0	-	0.6	(0.58,1]	chr20	789155	179	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	0	148	2	6.3182	6.59307	6.86794	8.82366e-4	1.74994e-4	0.0176886	0.00410754
chr1	62266231	62266331	497489	0	-	0.58	(0.523,0.58]	chr1	59360	1	SS5_PROX	SS5_PROX:INTRON	KANK4	ENSG00000132854.19	ENST00000371153.9:ENST00000354381.3:ENST00000371150.5	protein_coding	protein_coding	protein_coding	protein_coding	0	149	2	6.35489	6.593	6.83111	0.00549977	8.07247e-5	0.0489559	0.00233145
chr1	210653920	210654020	332871	0	+	0.45	(0.419,0.45]	chr1	37390	299	INTRON	INTRON	HHAT	ENSG00000054392.13	ENST00000541565.5:ENST00000413764.6:ENST00000261458.8:ENST00000537898.5:ENST00000545154.5:ENST00000367010.5:ENST00000367009.2	protein_coding	protein_coding	protein_coding	protein_coding	0	193	2	5.4831	6.592995	7.70289	0.0345118	1.51402e-5	0.126025	6.8895e-4
chr1	33020161	33020261	439967	0	-	0.41	(0.39,0.419]	chr1	52508	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	AK2	ENSG00000004455.18	ENST00000373449.7:ENST00000672715.1:ENST00000695598.1:ENST00000550338.6:ENST00000695599.1:ENST00000354858.11:ENST00000695600.1:ENST00000695601.1:ENST00000491241.2:ENST00000695602.1:ENST00000469238.2:ENST00000695603.1:ENST00000695604.1:ENST00000672308.1:ENST00000548033.5:ENST00000467905.5:ENST00000480134.5:ENST00000466029.1:ENST00000695605.1:ENST00000673291.1:ENST00000487289.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	153	2	6.47978	6.5928	6.70582	0.00435618	4.14458e-4	0.0427656	0.00767522
chr12	113837085	113837185	5509239	0	-	0.41	(0.39,0.419]	chr12	542458	134	INTRON	INTRON	RBM19	ENSG00000122965.11	ENST00000545145.6:ENST00000392561.7:ENST00000261741.10:ENST00000552384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	415	2	4.90952	6.59253	8.27554	0.00225222	2.19287e-6	0.0299628	1.774e-4
chr1	236844371	236844471	366309	0	+	0.48	(0.45,0.485]	chr1	41482	54	INTRON	INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1:ENST00000681937.1:ENST00000366576.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	155	2	6.29509	6.592325000000001	6.88956	0.00239127	4.85904e-4	0.0308863	0.00857996
chr10	18565461	18565561	4642383	0	-	0.39	(0.36,0.39]	chr10	443321	131	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	152	2	6.54378	6.591865	6.63995	0.00476216	3.45814e-4	0.0450109	0.00672667
chr3	188790258	188790358	1658184	0	+	0.36	(0.33,0.36]	chr3	173846	296	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000459897.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	151	2	6.5336	6.59173	6.64986	0.00388382	3.03099e-4	0.0401804	0.00611977
chr22	48703235	48703334	7751300	0	+	0.636364	(0.58,1]	chr22	812283	95	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	199	2	5.45872	6.591405	7.72409	0.00211999	1.247e-4	0.0239744	0.00618972
chr19	2440621	2440721	7309592	0	-	0.44	(0.419,0.45]	chr19	753890	17	INTRON	INTRON	LMNB2	ENSG00000176619.13	ENST00000325327.4	protein_coding	protein_coding	protein_coding	protein_coding	0	156	2	6.35897	6.59132	6.82367	0.00414811	6.44911e-4	0.0416765	0.0104285
chr22	35659496	35659596	7719710	0	+	0.49	(0.485,0.523]	chr22	808124	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	APOL6	ENSG00000221963.6	ENST00000409652.5	protein_coding	protein_coding	protein_coding	protein_coding	0	149	2	6.53888	6.591215	6.64355	0.00320229	2.02788e-4	0.0361639	0.0045746
chr9	134368676	134368776	4261110	0	+	0.47	(0.45,0.485]	chr9	406311	417	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	402	2	5.29797	6.59121	7.88445	8.55352e-4	4.18637e-6	0.0173935	2.79002e-4
chr10	79165629	79165728	4533013	0	+	0.656566	(0.58,1]	chr10	432438	31	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	144	2	6.51182	6.59114	6.67046	0.00135763	9.48877e-5	0.0224546	0.00262417
chr1	175955722	175955822	621717	0	-	0.38	(0.36,0.39]	chr1	73544	81	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	153	2	6.45858	6.59105	6.72352	0.00411221	4.35017e-4	0.0414433	0.007918
chr2	226732693	226732792	1379202	0	-	0.393939	(0.39,0.419]	chr2	147289	15	UTR3	UTR3:EXON_MRNA	IRS1	ENSG00000169047.6	ENST00000305123.6	protein_coding	protein_coding	protein_coding	protein_coding	0	159	2	6.21998	6.590515	6.96105	0.00276944	8.22163e-4	0.0332691	0.0124043
chr2	239158755	239158854	1390284	0	-	0.707071	(0.58,1]	chr2	148698	16	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	147	2	6.34387	6.59036	6.83685	9.44859e-4	1.61506e-4	0.0183873	0.00387712
chr6	169650066	169650164	3304364	0	-	0.540816	(0.523,0.58]	chr6	319869	4	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	148	2	6.51574	6.590345	6.66495	0.00409625	1.32802e-4	0.0413652	0.00337193
chr10	79221073	79221173	4533572	0	+	0.63	(0.58,1]	chr10	432457	44	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	3	1003	2	6.22016	6.59016	6.96016	6.37404e-6	1.81086e-7	0.00153039	3.421e-5
chr11	485249	485348	4784658	0	+	0.616162	(0.58,1]	chr11	457913	48	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	149	2	6.06599	6.590025000000001	7.11406	0.00477081	1.2868e-5	0.0450109	6.14919e-4
chr1	70204690	70204789	506963	0	-	0.484848	(0.45,0.485]	chr1	60314	151	INTRON	INTRON	LRRC40	ENSG00000066557.6	ENST00000370952.4	protein_coding	protein_coding	protein_coding	protein_coding	0	154	2	6.31986	6.58996	6.86006	0.00252685	4.53935e-4	0.031696	0.00818426
chr19	322935	323035	7303105	0	-	0.47	(0.45,0.485]	chr19	752407	89	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	157	2	6.2181	6.58943	6.96076	0.00209187	5.99406e-4	0.0287557	0.00993857
chr6	31652313	31652393	3119046	0	-	0.6375	(0.58,1]	chr6	303156	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BAG6	ENSG00000204463.14	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.2:ENST00000375976.8:ENST00000362049.10:ENST00000439687.6:ENST00000437771.5:ENST00000435080.5:ENST00000456622.5:ENST00000451898.5:ENST00000424480.5:ENST00000424176.5:ENST00000441054.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	1904	2	6.13847	6.588665	7.03886	6.31227e-6	8.10067e-9	0.00152915	4.58073e-6
chr16	73055652	73055751	6627967	0	-	0.636364	(0.58,1]	chr16	663553	77	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2:ENST00000397992.5	protein_coding	protein_coding	protein_coding	protein_coding	1	317	2	5.12053	6.588519999999999	8.05651	5.65914e-5	5.04672e-5	0.00418116	0.00165834
chr17	72554730	72554830	6963858	0	-	0.6	(0.58,1]	chr17	710389	203	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	313	2	6.09482	6.588385000000001	7.08195	5.47872e-4	1.64848e-6	0.0136476	1.46076e-4
chr8	700494	700594	3932734	0	-	0.74	(0.58,1]	chr8	376054	75	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000524138.5:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	143	2	6.37822	6.588335	6.79845	0.00252415	3.72743e-5	0.031696	0.00131851
chr16	4483136	4483236	6378403	0	+	0.48	(0.45,0.485]	chr16	630670	1	SS3_PROX	SS3_PROX:INTRON	HMOX2	ENSG00000103415.12	ENST00000575051.5:ENST00000406590.6:ENST00000619528.4:ENST00000619913.4:ENST00000458134.7:ENST00000219700.10:ENST00000570646.6:ENST00000575120.5:ENST00000574466.5:ENST00000572812.5:ENST00000576827.5:ENST00000574594.5:ENST00000570445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	329	2	5.42346	6.588305	7.75315	4.47844e-4	4.34881e-5	0.0121721	0.00148933
chr9	133915463	133915563	4429555	0	-	0.55	(0.523,0.58]	chr9	423310	537	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	393	2	5.31658	6.58798	7.85938	7.13646e-4	3.12125e-6	0.0157671	2.26144e-4
chr7	23410566	23410665	3552606	0	-	0.393939	(0.39,0.419]	chr7	343215	51	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	151	2	6.4939	6.587545	6.68119	0.00628691	2.39806e-4	0.0523832	0.00516473
chr19	56595728	56595828	7295036	0	+	0.48	(0.45,0.485]	chr19	751226	3	SS5_PROX	SS5_PROX:INTRON	ZNF71	ENSG00000197951.10	ENST00000328070.10:ENST00000599599.7:ENST00000594944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	149	2	6.48824	6.58742	6.6866	0.00499158	1.61391e-4	0.0463896	0.00387712
chr9	35728702	35728801	4298431	0	-	0.535354	(0.523,0.58]	chr9	411216	26	INTRON	INTRON	TLN1	ENSG00000137076.21	ENST00000314888.10:ENST00000378192.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	148	2	6.39681	6.587315	6.77782	0.00509616	9.47932e-5	0.0467496	0.00262417
chr17	49016331	49016431	6750212	0	+	0.45	(0.419,0.45]	chr17	680309	19	INTRON	INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2:ENST00000515586.5:ENST00000499130.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	153	2	6.32522	6.5873	6.84938	0.00956261	1.73559e-4	0.0658012	0.0040962
chr3	65921764	65921863	1814696	0	-	0.484848	(0.45,0.485]	chr3	187310	142	INTRON	INTRON	MAGI1:MAGI1-IT1	ENSG00000151276.24:ENSG00000272610.1	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5:ENST00000460754.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	0	149	2	6.52629	6.58714	6.64799	0.00466172	1.80357e-4	0.044542	0.00419938
chr8	143322454	143322549	4095552	0	-	0.642105	(0.58,1]	chr8	389125	7	INTRON	INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	143	2	6.35646	6.58668	6.8169	0.00264106	3.50609e-5	0.0325876	0.00126332
chr6	3146352	3146450	2828602	0	+	0.571429	(0.523,0.58]	chr6	277604	55	INTRON	INTRON	BPHL	ENSG00000137274.13	ENST00000434640.5:ENST00000430655.6:ENST00000424847.6:ENST00000433912.5:ENST00000380379.10:ENST00000490918.5:ENST00000380375.4:ENST00000488487.2:ENST00000423798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	465	2	4.56234	6.586245	8.61015	1.22777e-4	5.97725e-5	0.0042938	0.00320385
chr19	8248432	8248532	7200368	0	+	0.44	(0.419,0.45]	chr19	734198	66	INTRON	INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	349	2	5.22499	6.586155	7.94732	5.47845e-4	1.18629e-4	0.0136476	0.00311446
chr20	44424465	44424552	7483173	0	+	0.482759	(0.45,0.485]	chr20	779690	2	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000619550.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	330	2	5.74014	6.58551	7.43088	8.47151e-4	1.62119e-5	0.0173017	7.24128e-4
chr17	46938760	46938854	6746868	0	+	0.595745	(0.58,1]	chr17	679537	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	GOSR2	ENSG00000108433.17	ENST00000640608.1:ENST00000640792.1:ENST00000640358.1:ENST00000638634.1:ENST00000225567.9:ENST00000623037.2:ENST00000573224.2:ENST00000639985.1:ENST00000576910.7:ENST00000639199.1:ENST00000639365.1:ENST00000638892.1:ENST00000638838.1:ENST00000638216.1:ENST00000638579.1:ENST00000638189.1:ENST00000639066.1:ENST00000640051.2:ENST00000638697.1:ENST00000640443.1:ENST00000640711.1:ENST00000638219.1:ENST00000639388.1:ENST00000640495.1:ENST00000638374.1:ENST00000640138.1:ENST00000572403.5:ENST00000640068.1:ENST00000393456.7:ENST00000640723.1:ENST00000638468.1:ENST00000639713.1:ENST00000640871.1:ENST00000640866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	353	2	5.14569	6.584865	8.02404	5.105e-4	5.11305e-7	0.0131229	6.72975e-5
chr10	132573242	132573342	4617193	0	+	0.49	(0.485,0.523]	chr10	441139	347	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	149	2	6.29006	6.584475	6.87889	0.00613935	7.40532e-5	0.0517628	0.00219184
chr7	139102734	139102834	3721442	0	-	0.54	(0.523,0.58]	chr7	357411	126	INTRON	INTRON	ZC3HAV1	ENSG00000105939.14	ENST00000242351.10:ENST00000464606.5:ENST00000680309.1:ENST00000471652.1	protein_coding	protein_coding	protein_coding	protein_coding	0	150	2	6.40865	6.58441	6.76017	0.00258949	2.80789e-4	0.0321874	0.00578259
chr13	113011367	113011466	5655737	0	+	0.616162	(0.58,1]	chr13	555138	90	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	151	2	6.1825	6.584255000000001	6.98601	6.79156e-4	2.66047e-4	0.0153241	0.00556524
chr13	33188471	33188571	5684481	0	-	0.41	(0.39,0.419]	chr13	558192	25	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000399365.7:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	153	2	6.24541	6.5841650000000005	6.92292	0.00955236	1.22286e-4	0.0658012	0.00319203
chr10	18567360	18567460	4642402	0	-	0.4	(0.39,0.419]	chr10	443321	150	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	153	2	6.41344	6.58385	6.75426	0.00400086	4.94825e-4	0.0409634	0.00865935
chr3	42647355	42647453	1452465	0	+	0.44898	(0.419,0.45]	chr3	155084	15	UTR3	UTR3:EXON_MRNA	NKTR	ENSG00000114857.19	ENST00000429888.5:ENST00000232978.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	462	2	4.92729	6.583724999999999	8.24016	3.15963e-4	7.38665e-5	0.0101066	0.00219025
chr15	40539855	40539954	6235367	0	-	0.525253	(0.523,0.58]	chr15	613070	1	INTRON	INTRON	CCDC32	ENSG00000128891.16	ENST00000560305.5:ENST00000559153.5:ENST00000561011.5:ENST00000559291.5:ENST00000559911.5:ENST00000558113.5:ENST00000625629.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	152	2	6.312	6.582725	6.85345	0.00216679	3.69994e-4	0.0292299	0.00704866
chr12	132511010	132511104	5352723	0	+	0.62766	(0.58,1]	chr12	523657	7	UTR3	UTR3:EXON_MRNA:INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1:ENST00000542061.2	protein_coding	protein_coding	protein_coding	protein_coding	0	160	2	5.96814	6.582375	7.19661	5.06433e-4	4.22825e-4	0.011772	0.00881473
chr8	143516586	143516685	4096759	0	-	0.656566	(0.58,1]	chr8	389278	83	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6	protein_coding	protein_coding	protein_coding	protein_coding	0	143	2	6.51182	6.582265	6.65271	0.00141059	9.48877e-5	0.0229261	0.00262417
chr3	14403047	14403147	1414977	0	+	0.59	(0.58,1]	chr3	151900	2	SS5_PROX	SS5_PROX:INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000622810.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000613930.4:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	142	2	6.44159	6.581894999999999	6.7222	0.00221069	4.79419e-5	0.0295736	0.00159846
chr17	17742450	17742550	6689460	0	+	0.43	(0.419,0.45]	chr17	671344	179	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	158	2	6.07002	6.581795	7.09357	0.0143746	8.791e-5	0.0821732	0.00248329
chr19	55240711	55240800	7407340	0	-	0.617977	(0.58,1]	chr19	771264	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPP6R1	ENSG00000105063.19	ENST00000412770.7:ENST00000587283.5:ENST00000591323.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	142	2	6.5414	6.58112	6.62084	0.00179018	6.67603e-5	0.0262802	0.00202861
chr4	1323608	1323708	1995274	0	+	0.62	(0.58,1]	chr4	203262	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	142	2	6.5414	6.58112	6.62084	0.00179018	6.67603e-5	0.0262802	0.00202861
chr18	69487027	69487127	7084043	0	+	0.51	(0.485,0.523]	chr18	722115	154	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	0	148	2	6.33389	6.580695	6.8275	0.00567224	8.64447e-5	0.0496143	0.00245611
chr13	113538261	113538360	5658664	0	+	0.59596	(0.58,1]	chr13	555722	31	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	982	2	6.33545	6.58069	6.82593	8.90109e-6	1.17424e-7	0.00180651	2.59103e-5
chr8	143321686	143321786	4095544	0	-	0.66	(0.58,1]	chr8	389124	3	SS3_PROX	SS3_PROX:INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	147	2	6.09256	6.580575	7.06859	0.00452436	1.50295e-5	0.0436138	6.85908e-4
chr2	201194093	201194190	991178	0	+	0.391753	(0.39,0.419]	chr2	108956	11	EXON_MRNA	EXON_MRNA:INTRON	CASP10	ENSG00000003400.16	ENST00000374650.8:ENST00000492363.6:ENST00000696191.1:ENST00000460140.5:ENST00000313728.12:ENST00000272879.9:ENST00000346817.10:ENST00000696199.1:ENST00000286186.11:ENST00000438843.6:ENST00000471191.2:ENST00000448480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	153	2	6.39063	6.5803449999999994	6.77006	0.00389104	5.25726e-4	0.0402085	0.00903907
chr9	133916162	133916262	4429562	0	-	0.62	(0.58,1]	chr9	423310	544	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	142	2	6.56056	6.580125	6.59969	0.00171861	7.15008e-5	0.025659	0.00213784
chr17	59007133	59007233	6933617	0	-	0.56	(0.523,0.58]	chr17	706753	50	INTRON	INTRON	TRIM37	ENSG00000108395.14	ENST00000585287.5:ENST00000393066.7:ENST00000583945.5:ENST00000577554.5:ENST00000262294.12:ENST00000393065.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	147	2	6.43755	6.580019999999999	6.72249	0.00473049	1.11891e-4	0.0449253	0.00298349
chr17	82717196	82717296	6818049	0	+	0.65	(0.58,1]	chr17	689118	3	SS5_PROX	SS5_PROX:INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	147	2	6.29206	6.58	6.86794	8.82366e-4	1.89825e-4	0.0176886	0.0043642
chr11	70686405	70686504	5061143	0	-	0.494949	(0.485,0.523]	chr11	492688	164	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	150	2	6.38149	6.57903	6.77657	0.00248912	3.18797e-4	0.0315244	0.00634142
chr3	134372535	134372631	1920524	0	-	0.520833	(0.485,0.523]	chr3	195370	3	INTRON	INTRON	AMOTL2	ENSG00000114019.15	ENST00000249883.10:ENST00000514516.5:ENST00000422605.6:ENST00000513145.1:ENST00000512955.1:ENST00000511759.1:ENST00000510560.1:ENST00000504234.1:ENST00000506107.1:ENST00000515172.1:ENST00000502491.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	147	2	6.45793	6.57894	6.69995	0.00452302	1.26446e-4	0.0436138	0.00325863
chr1	43559124	43559224	107030	0	+	0.57	(0.523,0.58]	chr1	13192	48	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	859	2	6.54688	6.578875	6.61087	5.32783e-5	7.0554e-7	0.00405722	8.33867e-5
chr1	48227856	48227954	120978	0	+	0.459184	(0.45,0.485]	chr1	15165	27	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	150	2	6.25887	6.57883	6.89879	0.00748565	8.68871e-5	0.0576451	0.00246367
chr12	45808717	45808817	5215975	0	+	0.49	(0.485,0.523]	chr12	506511	325	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000422737.6	protein_coding	protein_coding	protein_coding	protein_coding	0	148	2	6.49563	6.578250000000001	6.66087	0.00309962	2.29841e-4	0.0355173	0.00498593
chr20	23634399	23634499	7537526	0	-	0.53	(0.523,0.58]	chr20	786639	4	SS3_PROX	SS3_PROX:INTRON	CST3	ENSG00000101439.9	ENST00000398411.5:ENST00000398409.1:ENST00000376925.8	protein_coding	protein_coding	protein_coding	protein_coding	0	147	2	6.57171	6.5780899999999995	6.58447	0.00369199	1.68436e-4	0.0389784	0.00400681
chr11	11938772	11938872	4799682	0	+	0.45	(0.419,0.45]	chr11	460391	4	SS5_PROX	SS5_PROX:INTRON	USP47	ENSG00000170242.19	ENST00000339865.9:ENST00000527733.7:ENST00000399455.2:ENST00000525078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	171	2	5.75975	6.578085	7.39642	0.0231013	3.70422e-5	0.102982	0.00131524
chr2	25807935	25808035	1109754	0	-	0.47	(0.45,0.485]	chr2	121025	12	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000497092.1	protein_coding	protein_coding	protein_coding	protein_coding	0	148	2	6.52629	6.57729	6.62829	0.00466172	1.90839e-4	0.044542	0.0043642
chr17	77215382	77215479	6803128	0	+	0.597938	(0.58,1]	chr17	686684	15	UTR3	UTR3:EXON_MRNA:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	1	355	2	5.39079	6.577245	7.7637	2.88709e-4	1.31287e-6	0.0096494	1.2535e-4
chr10	102648314	102648413	4576507	0	+	0.515152	(0.485,0.523]	chr10	437280	21	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	388	2	5.24004	6.577215	7.91439	8.28676e-4	2.82255e-6	0.0171232	2.10589e-4
chr9	133802392	133802492	4428415	0	-	0.62	(0.58,1]	chr9	423268	42	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	0	151	2	6.15376	6.5769400000000005	7.00012	6.58123e-4	2.90409e-4	0.0150669	0.0059241
chr4	67509205	67509305	2244181	0	-	0.37	(0.36,0.39]	chr4	226089	1	SS3_PROX	SS3_PROX:INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000513216.5:ENST00000506882.5:ENST00000510189.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	152	2	6.41401	6.576840000000001	6.73967	0.00399663	4.90006e-4	0.0409578	0.00861813
chr7	105733497	105733597	3670254	0	-	0.54	(0.523,0.58]	chr7	353945	420	INTRON	INTRON	ATXN7L1	ENSG00000146776.15	ENST00000419735.8	protein_coding	protein_coding	protein_coding	protein_coding	0	149	2	6.22127	6.5767	6.93213	0.00699217	5.9384e-5	0.0555241	0.00185705
chr18	74915321	74915421	7092435	0	+	0.5	(0.485,0.523]	chr18	722466	95	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	160	2	6.06388	6.5766849999999994	7.08949	0.00135789	7.70737e-4	0.0224546	0.0118331
chr13	50536157	50536257	5597986	0	+	0.37	(0.36,0.39]	chr13	551685	24	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1:ENST00000484869.6	lncRNA	lncRNA	lncRNA	lncRNA	1	367	2	4.88696	6.576625	8.26629	2.78875e-4	2.27617e-4	0.00851514	0.00577243
chr17	77486224	77486324	6805244	0	+	0.52	(0.485,0.523]	chr17	686821	22	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	322	2	5.36685	6.57635	7.78585	3.335e-4	4.39075e-5	0.0104047	0.0014988
chr2	105823101	105823201	869350	0	+	0.48	(0.45,0.485]	chr2	98084	61	INTRON	INTRON	NCK2	ENSG00000071051.14	ENST00000233154.9:ENST00000451463.6:ENST00000393348.6:ENST00000522586.5	protein_coding	protein_coding	protein_coding	protein_coding	0	151	2	6.36817	6.575875	6.78358	0.00291315	3.97249e-4	0.0342042	0.00741985
chr8	47735006	47735106	3817002	0	+	0.44	(0.419,0.45]	chr8	367411	3	SS3_PROX	SS3_PROX:INTRON	SPIDR	ENSG00000164808.17	ENST00000541342.2:ENST00000518074.5:ENST00000297423.9:ENST00000524126.5:ENST00000522117.5:ENST00000521214.5:ENST00000519401.5:ENST00000519141.5:ENST00000517693.5:ENST00000519362.5:ENST00000517619.5:ENST00000518060.5:ENST00000588781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	169	2	5.95751	6.57547	7.19343	0.00217056	0.0017735	0.029243	0.02121
chr4	1176870	1176969	2179445	0	-	0.434343	(0.419,0.45]	chr4	220858	38	INTRON	INTRON	SPON2	ENSG00000159674.12	ENST00000617421.4:ENST00000515004.5:ENST00000502483.5:ENST00000509233.5:ENST00000511679.5:ENST00000511672.5:ENST00000506266.1:ENST00000504871.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	181	2	5.59315	6.5754649999999994	7.55778	0.029494	2.31803e-5	0.116079	9.36605e-4
chr8	630837	630937	3932028	0	-	0.61	(0.58,1]	chr8	376005	32	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	142	2	6.5343	6.57543	6.61656	0.00152464	8.82891e-5	0.0240691	0.00248664
chr2	241415986	241416084	1076820	0	+	0.5	(0.485,0.523]	chr2	116969	22	INTRON	INTRON	FARP2	ENSG00000006607.14	ENST00000264042.8:ENST00000627550.2:ENST00000373287.8:ENST00000471447.5:ENST00000485051.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	147	2	6.56002	6.575175	6.59033	0.00353829	1.90696e-4	0.0381878	0.0043642
chr19	32351529	32351629	7238534	0	+	0.57	(0.523,0.58]	chr19	741026	38	INTRON	INTRON	ZNF507	ENSG00000168813.17	ENST00000311921.8:ENST00000355898.6:ENST00000587084.5:ENST00000544431.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	147	2	6.54248	6.57517	6.60786	0.00345115	1.90498e-4	0.037649	0.0043642
chr1	204081878	204081978	322138	0	+	0.6	(0.58,1]	chr1	36272	33	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1:ENST00000528591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	144	2	6.39389	6.57497	6.75605	0.00112759	1.38027e-4	0.0202727	0.00347229
chr2	78180817	78180917	1209258	0	-	0.33	(0.29,0.33]	chr2	130071	2406	INTRON	INTRON	ENSG00000227088	ENSG00000227088.2	ENST00000667782.1	lncRNA	lncRNA	lncRNA	lncRNA	1	320	2	5.53247	6.574615	7.61676	3.97661e-4	2.79403e-5	0.0114136	0.00106963
chr7	76998318	76998417	3398783	0	+	0.606061	(0.58,1]	chr7	328286	76	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	145	2	6.34387	6.57447	6.80507	0.00101308	1.61506e-4	0.0191342	0.00387712
chr2	233164724	233164824	1058273	0	+	0.49	(0.485,0.523]	chr2	115119	3	SS5_PROX	SS5_PROX:INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493078.1:ENST00000472517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	147	2	6.53888	6.573585	6.60829	0.00342137	2.02788e-4	0.0374749	0.0045746
chr11	72040504	72040604	5067513	0	-	0.54	(0.523,0.58]	chr11	493005	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NUMA1	ENSG00000137497.19	ENST00000393695.8:ENST00000358965.10:ENST00000351960.10:ENST00000613205.4:ENST00000542977.5:ENST00000537217.5:ENST00000540843.5:ENST00000534987.5:ENST00000536119.5:ENST00000544238.5:ENST00000543937.5:ENST00000543009.5:ENST00000537930.5:ENST00000535947.5:ENST00000535087.5:ENST00000368959.9:ENST00000541719.5:ENST00000366394.7:ENST00000541641.5:ENST00000537905.5:ENST00000535111.5:ENST00000535838.5:ENST00000546131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	158	2	6.09678	6.57348	7.05018	0.00148008	6.74499e-4	0.023604	0.0108081
chr2	219158009	219158085	1373113	0	-	0.460526	(0.45,0.485]	chr2	146387	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NHEJ1	ENSG00000187736.13	ENST00000356853.10:ENST00000409720.5:ENST00000418099.5:ENST00000457600.2:ENST00000450447.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	149	2	6.46019	6.573145	6.6861	0.00348661	3.07362e-4	0.0379065	0.00618726
chr7	561164	561264	3523696	0	-	0.55	(0.523,0.58]	chr7	340370	93	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000400758.6	protein_coding	protein_coding	protein_coding	protein_coding	0	149	2	6.19774	6.57302	6.9483	0.0072907	5.65196e-5	0.0567247	0.00179471
chr1	31414598	31414687	80070	0	+	0.550562	(0.523,0.58]	chr1	9151	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	SERINC2	ENSG00000168528.12	ENST00000373710.5:ENST00000536859.5:ENST00000487207.5:ENST00000373709.8:ENST00000536384.2:ENST00000491976.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	617	2	6.54248	6.5727150000000005	6.60295	1.90498e-4	4.72105e-5	0.0043642	0.00379612
chr21	44316724	44316824	7627893	0	+	0.61	(0.58,1]	chr21	797348	2	SS5_PROX	SS5_PROX:INTRON	PFKL	ENSG00000141959.17	ENST00000397961.6:ENST00000349048.9:ENST00000466134.5:ENST00000474114.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	164	2	5.86553	6.57271	7.27989	6.8352e-4	3.49762e-4	0.0108717	0.0106878
chr12	132533465	132533565	5352950	0	+	0.6	(0.58,1]	chr12	523670	51	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	141	2	6.46212	6.572315	6.68251	0.00211728	5.46055e-5	0.028892	0.00175188
chr21	45500241	45500340	7631307	0	+	0.565657	(0.523,0.58]	chr21	797812	22	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	0	150	2	6.33678	6.57217	6.80756	0.00236582	3.44853e-4	0.0306624	0.00672121
chr8	80154640	80154740	4005935	0	-	0.31	(0.29,0.33]	chr8	382863	344	INTRON	INTRON	TPD52	ENSG00000076554.16	ENST00000518937.6:ENST00000379096.9:ENST00000519303.6:ENST00000521354.5:ENST00000518517.5:ENST00000521241.6:ENST00000523753.5:ENST00000519250.5:ENST00000520795.5:ENST00000521561.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	148	2	6.25173	6.5709599999999995	6.89019	0.00588805	7.82018e-5	0.0506158	0.00227541
chr2	229818912	229819012	1380839	0	-	0.29	[0,0.29]	chr2	147547	4	SS3_PROX	SS3_PROX:INTRON	TRIP12	ENSG00000153827.14	ENST00000675453.1:ENST00000675903.1:ENST00000283943.9:ENST00000675423.1:ENST00000389044.8:ENST00000389045.7:ENST00000479037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	145	2	6.25925	6.57055	6.88185	0.00358096	5.33311e-5	0.0384019	0.00172258
chr5	78054998	78055098	2699112	0	-	0.41	(0.39,0.419]	chr5	266444	106	INTRON	INTRON	AP3B1	ENSG00000132842.15	ENST00000519295.6:ENST00000255194.11:ENST00000695515.1:ENST00000695454.1:ENST00000695511.1:ENST00000695453.1:ENST00000695455.1:ENST00000695513.1:ENST00000695488.1:ENST00000695450.1:ENST00000695507.1:ENST00000695506.1:ENST00000695512.1:ENST00000695510.1:ENST00000695451.1:ENST00000695447.1:ENST00000695458.1:ENST00000695505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	157	2	6.19386	6.570539999999999	6.94722	0.00283905	8.79539e-4	0.033773	0.0129939
chr10	132766544	132766643	4619138	0	+	0.484848	(0.45,0.485]	chr10	441207	3	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000445580.1	protein_coding	protein_coding	protein_coding	protein_coding	0	156	2	5.98601	6.5701599999999996	7.15431	0.0119228	4.04936e-5	0.0741726	0.00140723
chr2	54074536	54074636	795948	0	+	0.33	(0.29,0.33]	chr2	90725	86	INTRON	INTRON	ACYP2	ENSG00000170634.13	ENST00000458030.3:ENST00000607452.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	146	2	6.50392	6.570069999999999	6.63622	0.00368139	1.65505e-4	0.0389784	0.00395841
chr14	68899867	68899966	5999338	0	-	0.656566	(0.58,1]	chr14	588704	58	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	149	2	6.1825	6.569945000000001	6.95739	7.23847e-4	2.66047e-4	0.0158739	0.00556524
chr11	115306056	115306156	5129146	0	-	0.43	(0.419,0.45]	chr11	498106	187	INTRON	INTRON	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000541434.5:ENST00000543249.1:ENST00000540951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	150	2	6.46688	6.5697849999999995	6.67269	0.00757951	2.80959e-4	0.0579104	0.00578259
chr17	740600	740700	6663976	0	+	0.42	(0.419,0.45]	chr17	667327	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TLCD3A	ENSG00000167695.15	ENST00000572018.5:ENST00000301324.8:ENST00000308278.13:ENST00000570699.1:ENST00000577008.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	150	2	6.44748	6.56942	6.69136	0.00782663	2.67131e-4	0.0592048	0.00557451
chr2	235511634	235511734	1062712	0	+	0.39	(0.36,0.39]	chr2	115651	164	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	334	2	5.44652	6.569255	7.69199	6.91426e-4	5.54038e-5	0.0154989	0.00176778
chr13	77023054	77023154	5731522	0	-	0.39	(0.36,0.39]	chr13	561841	8	INTRON	INTRON	FBXL3	ENSG00000005812.11	ENST00000355619.10:ENST00000417323.1:ENST00000472949.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	149	2	6.51417	6.5692	6.62423	0.00592387	2.77822e-4	0.0506158	0.00576679
chr2	3237221	3237321	1080473	0	-	0.49	(0.485,0.523]	chr2	117609	226	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000482570.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	146	2	6.43798	6.568965	6.69995	0.00469187	1.26446e-4	0.0447158	0.00325863
chr22	27946860	27946960	7703824	0	+	0.32	(0.29,0.33]	chr22	806176	63	INTRON	INTRON	TTC28-AS1	ENSG00000235954.8	ENST00000430853.5:ENST00000434221.6:ENST00000417497.6:ENST00000424161.6:ENST00000419253.1:ENST00000454741.5:ENST00000659843.1:ENST00000665376.1:ENST00000453632.6:ENST00000662682.1:ENST00000655332.1:ENST00000454996.7:ENST00000665505.1:ENST00000435348.6:ENST00000664946.1:ENST00000425112.2:ENST00000654553.1:ENST00000669227.1:ENST00000452612.5:ENST00000688200.1:ENST00000662424.1:ENST00000654619.1	lncRNA	lncRNA	lncRNA	lncRNA	0	160	2	6.02857	6.568855	7.10914	0.0011272	9.04417e-4	0.0202727	0.0132704
chr12	124835995	124836095	5537074	0	-	0.43	(0.419,0.45]	chr12	546095	179	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000415380.6:ENST00000681117.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000539320.3:ENST00000545493.1:ENST00000541661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	161	2	6.1041	6.56877	7.03344	0.00288012	0.00123471	0.0341432	0.0164614
chr7	139703644	139703744	3723182	0	-	0.5	(0.485,0.523]	chr7	357498	716	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	2	839	2	6.3849	6.568735	6.75257	7.46861e-5	4.68908e-7	0.00483523	6.3683e-5
chr10	133349288	133349388	4783427	0	-	0.51	(0.485,0.523]	chr10	457516	31	INTRON	INTRON	ENSG00000226699	ENSG00000226699.1	ENST00000452591.1	lncRNA	lncRNA	lncRNA	lncRNA	1	330	2	5.1457	6.5685649999999995	7.99143	2.17771e-4	8.73161e-5	0.00834646	0.00247172
chr6	170399267	170399366	3076572	0	+	0.414141	(0.39,0.419]	chr6	299192	33	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	9	3050	2	6.42917	6.5685	6.70783	2.7315e-5	8.86688e-8	0.00295519	2.1964e-5
chr10	18565761	18565861	4642386	0	-	0.43	(0.419,0.45]	chr10	443321	134	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	157	2	6.21151	6.56844	6.92537	0.00347877	9.41863e-4	0.0378956	0.0135546
chr19	323535	323635	7303111	0	-	0.43	(0.419,0.45]	chr19	752407	95	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	157	2	6.21151	6.56844	6.92537	0.00347877	9.41863e-4	0.0378956	0.0135546
chr19	323235	323335	7303108	0	-	0.47	(0.45,0.485]	chr19	752407	92	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	154	2	6.2181	6.56828	6.91846	0.00226513	5.99406e-4	0.0300628	0.00993857
chr20	18658164	18658264	7444014	0	+	0.48	(0.45,0.485]	chr20	774758	256	INTRON	INTRON	ENSG00000284776:DTD1	ENSG00000284776.1:ENSG00000125821.13	ENST00000618693.4:ENST00000647441.1:ENST00000377452.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	147	2	6.46883	6.568125	6.66742	0.00516809	1.70557e-4	0.0472296	0.00403679
chr9	133470168	133470265	4259758	0	+	0.494845	(0.485,0.523]	chr9	406088	16	UTR3	UTR3:EXON_MRNA	CACFD1	ENSG00000160325.15	ENST00000540581.5:ENST00000542192.5:ENST00000291722.11:ENST00000316948.9	protein_coding	protein_coding	protein_coding	protein_coding	1	398	2	5.48174	6.567965	7.65419	5.0387e-4	6.56483e-6	0.0130238	3.8256e-4
chr19	36605830	36605930	7248627	0	+	0.48	(0.45,0.485]	chr19	743033	1	SS5_PROX	SS5_PROX:INTRON	ZNF382	ENSG00000161298.19	ENST00000423582.5:ENST00000292928.7:ENST00000460670.5:ENST00000460384.1:ENST00000463910.1:ENST00000439428.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	147	2	6.44916	6.567880000000001	6.6866	0.00535292	1.61391e-4	0.0480663	0.00387712
chr5	119278402	119278502	2516689	0	+	0.46	(0.45,0.485]	chr5	249986	91	INTRON	INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5	protein_coding	protein_coding	protein_coding	protein_coding	0	147	2	6.42921	6.567365000000001	6.70552	0.00554658	1.52809e-4	0.0492398	0.00372909
chr6	130848168	130848268	3260008	0	-	0.47	(0.45,0.485]	chr6	315433	72	INTRON	INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000528282.5:ENST00000531410.5:ENST00000452150.6:ENST00000392427.7:ENST00000530757.5:ENST00000368128.6:ENST00000527411.5:ENST00000524581.5:ENST00000525271.5:ENST00000526782.1:ENST00000368126.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	151	2	6.31986	6.56726	6.81466	0.00274987	4.53935e-4	0.0332418	0.00818426
chr2	235758083	235758183	1065189	0	+	0.38	(0.36,0.39]	chr2	115700	72	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	154	2	6.2714	6.5670649999999995	6.86273	0.0032112	7.13729e-4	0.0362232	0.0112151
chr2	27778346	27778444	736595	0	+	0.367347	(0.36,0.39]	chr2	86475	35	INTRON	INTRON	MRPL33	ENSG00000243147.8	ENST00000379666.7:ENST00000296102.8:ENST00000448427.1:ENST00000483992.5:ENST00000476552.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	166	2	5.96653	6.566929999999999	7.16733	0.00184791	0.00155347	0.0268409	0.0193429
chr3	12966390	12966489	1688793	0	-	0.606061	(0.58,1]	chr3	176520	54	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	143	2	6.39389	6.56661	6.73933	0.00116939	1.38027e-4	0.0206836	0.00347229
chr3	197792040	197792139	1668698	0	+	0.484848	(0.45,0.485]	chr3	175021	1	INTRON	INTRON	LRCH3	ENSG00000186001.14	ENST00000443727.1:ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	147	2	6.54495	6.566504999999999	6.58806	0.00450754	2.14087e-4	0.0436138	0.00475596
chr9	134368975	134369075	4261113	0	+	0.56	(0.523,0.58]	chr9	406311	420	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	152	2	6.235	6.56646	6.89792	0.00198913	4.59688e-4	0.0279961	0.00821903
chr17	78798320	78798419	6979432	0	-	0.636364	(0.58,1]	chr17	712642	28	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	USP36	ENSG00000055483.20	ENST00000588130.5:ENST00000587010.5:ENST00000591052.5:ENST00000589225.5:ENST00000587379.1:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	391	2	5.10946	6.565915	8.02237	6.14127e-5	1.05326e-5	0.00435547	5.33448e-4
chr17	82718043	82718143	6818058	0	+	0.47	(0.45,0.485]	chr17	689120	2	SS3_PROX	SS3_PROX:INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	350	2	4.93893	6.565655	8.19238	1.8766e-4	1.84408e-4	0.007657	0.00433756
chr12	132780097	132780197	5540252	0	-	0.63	(0.58,1]	chr12	546769	19	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	296	2	5.40703	6.56556	7.72409	1.247e-4	1.89666e-5	0.00618972	8.10733e-4
chr13	28139686	28139786	5555513	0	+	0.41	(0.39,0.419]	chr13	548208	2	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	150	2	6.28991	6.565535000000001	6.84116	0.00887176	1.53866e-4	0.0634853	0.00374891
chr12	62771345	62771445	5445756	0	-	0.43	(0.419,0.45]	chr12	535900	334	INTRON	INTRON	PPM1H	ENSG00000111110.12	ENST00000228705.7:ENST00000551519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	151	2	6.44952	6.5654699999999995	6.68142	0.00529005	5.09118e-4	0.047841	0.00884498
chr2	11814487	11814587	722753	0	+	0.44	(0.419,0.45]	chr2	84465	90	INTRON	INTRON	LPIN1	ENSG00000134324.12	ENST00000449576.6:ENST00000425416.6:ENST00000396097.5:ENST00000396099.5:ENST00000256720.6:ENST00000674199.1:ENST00000404113.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	151	2	6.44952	6.5654699999999995	6.68142	0.00529005	5.09118e-4	0.047841	0.00884498
chr5	60322309	60322409	2677376	0	-	0.43	(0.419,0.45]	chr5	264422	183	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000502484.6:ENST00000509355.5:ENST00000506024.5:ENST00000506510.6:ENST00000511382.1:ENST00000505507.6:ENST00000514552.5:ENST00000515835.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	155	2	6.26235	6.565245	6.86814	0.00384173	8.27298e-4	0.0399957	0.0124589
chr16	89429056	89429156	6661124	0	-	0.55	(0.523,0.58]	chr16	666747	103	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	869	2	5.73985	6.5651399999999995	7.39043	2.96647e-4	4.87895e-8	0.00982007	1.48222e-5
chr3	101586498	101586595	1523754	0	+	0.443299	(0.419,0.45]	chr3	162106	6	INTRON	INTRON	PCNP	ENSG00000081154.12	ENST00000265260.8:ENST00000498274.5:ENST00000460231.5:ENST00000469941.5:ENST00000486406.5:ENST00000470490.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	412	2	5.02664	6.564475	8.10231	0.00205599	4.60051e-6	0.0284784	2.97168e-4
chr16	29268014	29268114	6433517	0	+	0.6	(0.58,1]	chr16	636745	159	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	157	2	5.96814	6.563765	7.15939	5.06433e-4	4.60046e-4	0.0123493	0.00881473
chr17	29534899	29534998	6709788	0	+	0.454545	(0.45,0.485]	chr17	673753	2	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding	1	326	2	5.30378	6.563689999999999	7.8236	3.8895e-4	6.27673e-5	0.0113333	0.0019321
chr4	885184	885283	2178454	0	-	0.494949	(0.485,0.523]	chr4	220625	7	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5	protein_coding	protein_coding	protein_coding	protein_coding	0	148	2	6.19817	6.56334	6.92851	0.00723584	6.37267e-5	0.0565323	0.00195661
chr2	199451077	199451177	1353849	0	-	0.44	(0.419,0.45]	chr2	143763	172	INTRON	INTRON	SATB2	ENSG00000119042.17	ENST00000614512.4:ENST00000417098.6:ENST00000260926.9:ENST00000443023.5:ENST00000428695.5:ENST00000457245.5:ENST00000440919.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	154	2	6.1199	6.563335	7.00677	0.0132894	1.1216e-4	0.0787251	0.00298349
chr7	74831410	74831509	3603806	0	-	0.414141	(0.39,0.419]	chr7	347861	60	INTRON	INTRON	GTF2IRD2	ENSG00000196275.16	ENST00000451013.7:ENST00000651129.1:ENST00000619775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	149	2	6.35419	6.563215	6.77224	0.0079671	1.86459e-4	0.0596361	0.00431276
chr7	1937795	1937894	3529602	0	-	0.686869	(0.58,1]	chr7	340962	5	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000450235.5:ENST00000437877.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	143	2	6.16945	6.56301	6.95657	0.00387582	2.19702e-5	0.0401256	8.99734e-4
chr17	57526376	57526476	6762478	0	+	0.51	(0.485,0.523]	chr17	682146	16	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1:ENST00000674898.1:ENST00000676345.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	148	2	6.38149	6.56297	6.74445	0.00264613	3.18797e-4	0.032596	0.00634142
chr13	28139387	28139487	5555510	0	+	0.58	(0.523,0.58]	chr13	548207	3	SS5_PROX	SS5_PROX:INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	150	2	6.28679	6.562555	6.83832	0.00223061	3.97355e-4	0.0297064	0.00741985
chr2	239277480	239277580	1391483	0	-	0.59	(0.58,1]	chr2	148740	259	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	141	2	6.28914	6.56213	6.83512	0.00303562	3.30003e-5	0.0350226	0.00120982
chr19	3528214	3528314	7191580	0	+	0.68	(0.58,1]	chr19	732248	4	SS5_PROX	SS5_PROX:INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	147	2	6.21068	6.56202	6.91336	7.98131e-4	2.44053e-4	0.0167692	0.00522003
chr16	85426320	85426420	6517334	0	+	0.48	(0.45,0.485]	chr16	646391	670	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	157	2	6.10862	6.561955	7.01529	0.00188703	8.0459e-4	0.0271069	0.012189
chr14	73094727	73094826	5880331	0	+	0.565657	(0.523,0.58]	chr14	574016	59	INTRON	INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000531500.5:ENST00000261973.12:ENST00000532683.5:ENST00000525321.5:ENST00000526754.5:ENST00000528081.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	148	2	6.36114	6.560655	6.76017	0.00258949	3.21725e-4	0.0321874	0.0063695
chr1	44812804	44812895	115031	0	+	0.571429	(0.523,0.58]	chr1	14299	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BTBD19	ENSG00000222009.9	ENST00000450269.6:ENST00000409335.6:ENST00000439563.2:ENST00000485668.5:ENST00000482715.5:ENST00000475105.5:ENST00000495433.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	316	2	5.40856	6.560575	7.71259	3.92044e-4	3.68325e-5	0.0113511	0.00131223
chr2	232899970	232900069	1383838	0	-	0.444444	(0.419,0.45]	chr2	147952	47	INTRON	INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000416114.3:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	337	2	5.55958	6.560575	7.56157	0.00111728	4.50698e-5	0.0202011	0.00152422
chr10	95477837	95477937	4734442	0	-	0.37	(0.36,0.39]	chr10	452034	363	INTRON	INTRON	SORBS1	ENSG00000095637.23	ENST00000371227.8:ENST00000306402.10:ENST00000371249.6:ENST00000371247.7:ENST00000371246.6:ENST00000607232.5:ENST00000474353.6:ENST00000492542.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	179	2	5.73251	6.5604	7.38829	0.0027486	0.00122681	0.028553	0.0212571
chr7	55539925	55540024	3592311	0	-	0.424242	(0.419,0.45]	chr7	346466	4	INTRON	INTRON	VOPP1	ENSG00000154978.13	ENST00000462326.5:ENST00000285279.10:ENST00000428648.5:ENST00000418904.5:ENST00000454227.5:ENST00000427700.1:ENST00000452832.5:ENST00000453112.5:ENST00000471168.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	153	2	6.31147	6.560005	6.80854	0.00425752	7.29222e-4	0.0422596	0.0113963
chr14	104804126	104804223	5925855	0	+	0.587629	(0.58,1]	chr14	579930	18	UTR3	UTR3:EXON_MRNA	ZBTB42	ENSG00000179627.10	ENST00000342537.8	protein_coding	protein_coding	protein_coding	protein_coding	0	140	2	6.37822	6.55993	6.74164	0.00252415	4.4971e-5	0.031696	0.00152119
chr7	47472510	47472610	3588533	0	-	0.52	(0.485,0.523]	chr7	346123	194	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	145	2	6.4776	6.559615	6.64163	0.00436205	1.50187e-4	0.0427656	0.0036849
chr1	23110648	23110747	422838	0	-	0.434343	(0.419,0.45]	chr1	49676	6	INTRON	INTRON	LUZP1	ENSG00000169641.14	ENST00000302291.8:ENST00000314174.5:ENST00000471849.5:ENST00000475164.2	protein_coding	protein_coding	protein_coding	protein_coding	0	151	2	6.40495	6.559605	6.71426	0.0050028	5.72149e-4	0.0463896	0.00960229
chr16	16155124	16155217	6556402	0	-	0.430108	(0.419,0.45]	chr16	653054	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6:ENST00000576204.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	545	2	4.67917	6.559555	8.43994	2.16212e-4	7.73623e-5	0.00831529	0.00226314
chr16	85433517	85433617	6517406	0	+	0.47	(0.45,0.485]	chr16	646391	742	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	150	2	6.31986	6.5595300000000005	6.7992	0.00282996	4.53935e-4	0.033746	0.00818426
chr21	43959433	43959533	7625378	0	+	0.51	(0.485,0.523]	chr21	796925	4	SS3_PROX	SS3_PROX:INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000448845.1:ENST00000422850.5:ENST00000546158.1	protein_coding	protein_coding	protein_coding	protein_coding	0	148	2	6.17426	6.55947	6.94468	0.00754939	6.06735e-5	0.0578091	0.00188492
chr10	102649278	102649378	4576517	0	+	0.59	(0.58,1]	chr10	437282	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1:ENST00000487927.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	296	2	5.36112	6.559405	7.75769	1.15206e-4	2.22261e-5	0.00597643	9.06675e-4
chr15	22558988	22559088	6059864	0	+	0.65	(0.58,1]	chr15	594971	15	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	141	2	6.4658	6.559255	6.65271	0.00141059	1.09908e-4	0.0229261	0.00294443
chr9	96608904	96609004	4345528	0	-	0.34	(0.33,0.36]	chr9	415195	418	INTRON	INTRON	CDC14B	ENSG00000081377.17	ENST00000474602.5:ENST00000412285.6:ENST00000375241.6:ENST00000375240.7:ENST00000463569.5:ENST00000415608.1:ENST00000496750.5:ENST00000463547.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	163	2	5.97713	6.559065	7.141	0.00155921	0.00133012	0.0243306	0.0173248
chr16	953142	953230	6531564	0	-	0.613636	(0.58,1]	chr16	648705	1	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1:ENST00000566609.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	145	2	6.26544	6.55896	6.85248	9.12934e-4	2.06156e-4	0.0180377	0.00461335
chr10	11563374	11563468	4629193	0	-	0.414894	(0.39,0.419]	chr10	442289	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000379237.6:ENST00000443016.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	148	2	6.47475	6.5589200000000005	6.64309	0.00649594	2.66223e-4	0.0532359	0.00556524
chr1	43564604	43564704	107085	0	+	0.58	(0.523,0.58]	chr1	13192	103	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	323	2	5.204	6.55884	7.91368	2.58976e-4	7.00257e-5	0.0091002	0.00210498
chr3	33520866	33520965	1733942	0	-	0.464646	(0.45,0.485]	chr3	179450	33	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000487553.5:ENST00000635664.1:ENST00000476251.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	146	2	6.46883	6.55841	6.64799	0.00516809	1.80357e-4	0.0472296	0.00419938
chr10	80495380	80495479	4535533	0	+	0.464646	(0.45,0.485]	chr10	432713	57	INTRON	INTRON	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000481124.5:ENST00000372158.6:ENST00000372157.6:ENST00000469149.1:ENST00000372164.7:ENST00000341863.10:ENST00000372156.5:ENST00000616406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	146	2	6.44916	6.5582899999999995	6.66742	0.00535292	1.70557e-4	0.0480663	0.00403679
chr2	241758712	241758812	1078980	0	+	0.53	(0.523,0.58]	chr2	117347	23	INTRON	INTRON	D2HGDH	ENSG00000180902.18	ENST00000403782.5:ENST00000436747.5:ENST00000321264.9:ENST00000400769.6:ENST00000486953.5:ENST00000470343.5:ENST00000473126.1:ENST00000468064.5:ENST00000445308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	146	2	6.2672	6.557824999999999	6.84845	0.00644151	7.65992e-5	0.0530091	0.00224403
chr1	206733206	206733304	327095	0	+	0.540816	(0.523,0.58]	chr1	36847	6	UTR3	UTR3:EXON_MRNA	MAPKAPK2	ENSG00000162889.11	ENST00000367103.4	protein_coding	protein_coding	protein_coding	protein_coding	1	314	2	5.51495	6.5577000000000005	7.60045	4.93015e-4	2.62578e-5	0.0128889	0.00102025
chr5	882955	883053	2608206	0	-	0.571429	(0.523,0.58]	chr5	259476	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	832	2	5.97658	6.557485	7.13839	1.80183e-4	1.16448e-7	0.0075626	2.59103e-5
chr11	70777457	70777557	5062056	0	-	0.51	(0.485,0.523]	chr11	492701	596	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	549	2	5.12049	6.557365	7.99424	4.18179e-4	2.17299e-6	0.0117676	1.76047e-4
chr9	96603111	96603211	4345470	0	-	0.41	(0.39,0.419]	chr9	415195	360	INTRON	INTRON	CDC14B	ENSG00000081377.17	ENST00000474602.5:ENST00000412285.6:ENST00000375241.6:ENST00000375240.7:ENST00000463569.5:ENST00000415608.1:ENST00000496750.5:ENST00000463547.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	158	2	6.11256	6.557155	7.00175	0.00257379	0.00108325	0.0321387	0.0149525
chr7	47379812	47379912	3587590	0	-	0.54	(0.523,0.58]	chr7	346036	98	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	145	2	6.54248	6.557095	6.57171	0.00369199	1.90498e-4	0.0389784	0.0043642
chr8	65840387	65840484	3989046	0	-	0.412371	(0.39,0.419]	chr8	381668	18	INTRON	INTRON	PDE7A	ENSG00000205268.11	ENST00000401827.8:ENST00000396642.7:ENST00000519231.5:ENST00000519626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	149	2	6.28991	6.557074999999999	6.82424	0.00887176	1.6132e-4	0.0634853	0.00387712
chr6	169516738	169516838	3303020	0	-	0.51	(0.485,0.523]	chr6	319798	579	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	145	2	6.37643	6.556995000000001	6.73756	0.0052506	1.13097e-4	0.0476984	0.0030016
chr7	105935975	105936075	3444121	0	+	0.44	(0.419,0.45]	chr7	333440	119	INTRON	INTRON	CDHR3	ENSG00000128536.16	ENST00000470188.5:ENST00000488386.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	451	2	5.05989	6.5568550000000005	8.05382	4.48848e-4	5.00604e-5	0.0121771	0.00164756
chr19	35002121	35002221	7244879	0	+	0.53	(0.523,0.58]	chr19	742064	3	SS3_PROX	SS3_PROX:INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	166	2	5.8779	6.556385000000001	7.23487	0.00121652	0.00102861	0.0192522	0.0162693
chr10	96142356	96142456	4560211	0	+	0.33	(0.29,0.33]	chr10	435112	67	INTRON	INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	428	2	5.32714	6.556010000000001	7.78488	2.79415e-4	1.2149e-5	0.00949286	5.90214e-4
chr13	47945630	47945730	5707797	0	-	0.46	(0.45,0.485]	chr13	559988	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SUCLA2	ENSG00000136143.16	ENST00000643584.1:ENST00000493152.6:ENST00000481279.2:ENST00000646932.1:ENST00000643023.1:ENST00000646804.1:ENST00000647361.1:ENST00000642944.1:ENST00000467222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	148	2	6.39173	6.55553	6.71933	0.00328012	3.72107e-4	0.0367219	0.00707906
chr13	98488198	98488297	5747398	0	-	0.555556	(0.523,0.58]	chr13	563336	55	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000376547.7:ENST00000444574.1:ENST00000491878.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	154	2	6.1255	6.554225	6.98295	0.00168728	6.23263e-4	0.0254298	0.0101764
chr6	170400263	170400362	3076582	0	+	0.444444	(0.419,0.45]	chr6	299192	43	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	1	474	2	4.21498	6.554169999999999	8.89336	0.00862096	4.08181e-7	0.0623824	5.79479e-5
chr12	57151735	57151833	5240637	0	+	0.540816	(0.523,0.58]	chr12	510200	18	INTRON	INTRON	LRP1	ENSG00000123384.14	ENST00000243077.8:ENST00000554174.1	protein_coding	protein_coding	protein_coding	protein_coding	0	152	2	6.18129	6.55406	6.92683	0.00188118	5.34061e-4	0.0270971	0.0091384
chr7	2042317	2042417	3530655	0	-	0.58	(0.523,0.58]	chr7	340995	273	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	145	2	6.31171	6.5537600000000005	6.79581	0.00594629	8.98003e-5	0.0506158	0.00252158
chr3	10901990	10902090	1408552	0	+	0.47	(0.45,0.485]	chr3	151278	265	INTRON	INTRON	SLC6A11	ENSG00000132164.10	ENST00000254488.7	protein_coding	protein_coding	protein_coding	protein_coding	0	147	2	6.25887	6.553735	6.8486	0.00748565	1.00721e-4	0.0576451	0.00275456
chr12	81098085	81098184	5283215	0	+	0.454545	(0.45,0.485]	chr12	514448	193	INTRON	INTRON	ACSS3	ENSG00000111058.8	ENST00000549175.1:ENST00000261206.7:ENST00000548058.6	protein_coding	protein_coding	protein_coding	protein_coding	2	429	2	5.15917	6.553565	7.94796	3.0286e-4	2.32668e-5	0.00988096	9.36813e-4
chr1	5873905	5873970	386554	0	-	0.584615	(0.58,1]	chr1	44375	2	INTRON	INTRON	NPHP4	ENSG00000131697.18	ENST00000378156.9:ENST00000478423.6:ENST00000489180.6:ENST00000378169.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	141	2	6.21852	6.553475	6.88843	0.00350812	2.76213e-5	0.0379357	0.00106056
chr10	122429423	122429523	4602331	0	+	0.47	(0.45,0.485]	chr10	440091	4	SS3_PROX	SS3_PROX:INTRON	PLEKHA1	ENSG00000107679.15	ENST00000368990.8:ENST00000368989.6:ENST00000392799.7:ENST00000368988.5:ENST00000433307.2	protein_coding	protein_coding	protein_coding	protein_coding	1	402	2	4.50473	6.553235	8.60174	6.54581e-4	7.94375e-5	0.0105726	0.00494878
chr19	46775061	46775150	7391445	0	-	0.516854	(0.485,0.523]	chr19	767897	3	UTR3	UTR3:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6	protein_coding	protein_coding	protein_coding	protein_coding	14	4043	2	6.12357	6.553	6.98243	4.64306e-6	5.69305e-8	0.00130987	1.60424e-5
chr19	15643107	15643207	7215384	0	+	0.28	[0,0.29]	chr19	737133	11	INTRON	INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	159	2	5.92742	6.552479999999999	7.17754	8.88991e-4	5.08597e-4	0.0131004	0.0130852
chr10	18567160	18567260	4642400	0	-	0.37	(0.36,0.39]	chr10	443321	148	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	149	2	6.41401	6.55234	6.69067	0.00435707	4.90006e-4	0.0427656	0.00861813
chr20	44401900	44401976	7482931	0	+	0.473684	(0.45,0.485]	chr20	779634	1	SS5_PROX	SS5_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000682427.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	320	2	5.59473	6.55185	7.50897	7.26773e-4	2.55727e-5	0.0158761	0.00100488
chr19	47271678	47271769	7276808	0	+	0.681319	(0.58,1]	chr19	747463	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCDC9	ENSG00000105321.14	ENST00000643617.1:ENST00000221922.11	protein_coding	protein_coding	protein_coding	protein_coding	0	167	2	5.75506	6.5513449999999995	7.34763	9.38062e-4	2.99474e-4	0.0135546	0.00982269
chr9	134340033	134340133	4260823	0	+	0.59	(0.58,1]	chr9	406311	130	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	302	2	5.18783	6.551325	7.91482	7.93839e-5	4.01988e-5	0.00494878	0.00140096
chr2	201069464	201069563	1356543	0	-	0.424242	(0.419,0.45]	chr2	144186	77	INTRON	INTRON	FAM126B	ENSG00000155744.10	ENST00000681958.1:ENST00000418596.7:ENST00000286181.7:ENST00000498780.5:ENST00000452799.5:ENST00000453765.5:ENST00000446678.5:ENST00000474118.5:ENST00000485636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	149	2	6.3038	6.5512	6.7986	0.00990101	1.99513e-4	0.0671959	0.00452558
chr2	239988798	239988891	1393714	0	-	0.494624	(0.485,0.523]	chr2	148853	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	147	2	6.35753	6.55099	6.74445	0.00264613	3.41236e-4	0.032596	0.00667174
chr20	6026238	6026338	7425882	0	+	0.4	(0.39,0.419]	chr20	773619	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	556	2	4.83846	6.550750000000001	8.26304	0.00111451	2.27926e-6	0.0201895	1.8263e-4
chr21	34839200	34839300	7655336	0	-	0.52	(0.485,0.523]	chr21	801030	42	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000469087.1:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	150	2	6.04835	6.5507	7.05305	0.00941539	4.35721e-5	0.0653252	0.00149008
chr13	112972346	112972445	5655344	0	+	0.464646	(0.45,0.485]	chr13	555120	25	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	159	2	6.02069	6.550685	7.08068	0.00166658	0.00101549	0.0252632	0.0143256
chr16	978054	978154	6531819	0	-	0.51	(0.485,0.523]	chr16	648726	72	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000545827.6:ENST00000570014.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	148	2	6.3084	6.550385	6.79237	0.00241519	3.92049e-4	0.0309229	0.00735595
chr15	51971187	51971287	6261340	0	-	0.49	(0.485,0.523]	chr15	617019	1	SS5_PROX	SS5_PROX:INTRON	LEO1	ENSG00000166477.13	ENST00000299601.10:ENST00000315141.5	protein_coding	protein_coding	protein_coding	protein_coding	0	150	2	6.2314	6.550129999999999	6.86886	0.00208565	4.86354e-4	0.0287557	0.00857996
chr19	36851440	36851533	7249346	0	+	0.516129	(0.485,0.523]	chr19	743114	4	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF345	ENSG00000251247.12	ENST00000589046.1:ENST00000586933.5:ENST00000420450.6:ENST00000614069.4:ENST00000532141.5:ENST00000526123.5:ENST00000432005.6:ENST00000529555.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	144	2	6.45793	6.54978	6.64163	0.00452302	1.50187e-4	0.0436138	0.0036849
chr19	46978791	46978891	7275361	0	+	0.56	(0.523,0.58]	chr19	747275	410	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	149	2	6.26113	6.5497250000000005	6.83832	0.00223061	4.27166e-4	0.0297064	0.00779962
chr1	23392980	23393080	424245	0	-	0.49	(0.485,0.523]	chr1	49807	52	INTRON	INTRON	TCEA3	ENSG00000204219.11	ENST00000450454.7:ENST00000476978.2	protein_coding	protein_coding	protein_coding	protein_coding	0	144	2	6.43798	6.549659999999999	6.66134	0.00469187	1.41724e-4	0.0447158	0.00352935
chr22	31227914	31228014	7712094	0	+	0.49	(0.485,0.523]	chr22	806999	17	INTRON	INTRON	LIMK2	ENSG00000182541.18	ENST00000462625.1:ENST00000406516.5:ENST00000331728.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	144	2	6.39724	6.548595000000001	6.69995	0.00505512	1.26446e-4	0.0465263	0.00325863
chr13	112912916	112913016	5654745	0	+	0.46	(0.45,0.485]	chr13	555099	24	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000442625.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	417	2	5.62261	6.5484100000000005	7.47421	4.45152e-4	1.51996e-5	0.0121471	6.9067e-4
chr11	68331772	68331872	4882275	0	+	0.57	(0.523,0.58]	chr11	470542	186	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	437	2	4.66945	6.547235000000001	8.42502	8.86094e-5	8.79485e-5	0.00521905	0.00248329
chr6	35494000	35494100	3125635	0	-	0.48	(0.45,0.485]	chr6	304825	69	INTRON	INTRON	TEAD3	ENSG00000007866.22	ENST00000338863.13:ENST00000402886.9:ENST00000639578.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	151	2	6.03961	6.54706	7.05451	0.0108974	5.46803e-5	0.0707085	0.00175188
chr1	212381719	212381817	656559	0	-	0.55102	(0.523,0.58]	chr1	77439	13	INTRON	INTRON	PACC1	ENSG00000065600.13	ENST00000261455.9:ENST00000535273.2:ENST00000467822.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	144	2	6.33346	6.546535	6.75961	0.00571732	1.00121e-4	0.0498083	0.00274217
chr10	7722565	7722661	4442142	0	+	0.510417	(0.485,0.523]	chr10	425524	4	INTRON	INTRON	ITIH2	ENSG00000151655.19	ENST00000358415.9:ENST00000379587.4	protein_coding	protein_coding	protein_coding	protein_coding	0	153	2	5.93906	6.546455	7.15385	0.0113657	3.1927e-5	0.0723462	0.00117872
chr8	70401113	70401213	3995226	0	-	0.44	(0.419,0.45]	chr8	382245	1040	INTRON	INTRON	NCOA2	ENSG00000140396.13	ENST00000452400.7:ENST00000518287.6:ENST00000520416.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	149	2	6.42741	6.546060000000001	6.66471	0.00544202	5.39517e-4	0.0486855	0.00920925
chr19	15643806	15643906	7215391	0	+	0.53	(0.523,0.58]	chr19	737135	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	159	2	5.9758	6.5451	7.1144	0.00130498	9.36996e-4	0.0220198	0.0135546
chrX	2234124	2234224	7966179	0	-	0.53	(0.523,0.58]	chrX	834328	125	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11	protein_coding	protein_coding	protein_coding	protein_coding	2	555	2	5.1876	6.544555	7.90151	3.66299e-4	2.71794e-6	0.0109836	2.04763e-4
chr15	25434964	25435064	6205971	0	-	0.49	(0.485,0.523]	chr15	610832	75	INTRON	INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000625681.2:ENST00000627018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	145	2	6.42823	6.54455	6.66087	0.00309962	2.78987e-4	0.0355173	0.00577243
chr16	12261742	12261842	6392486	0	+	0.63	(0.58,1]	chr16	631965	617	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	143	2	6.06599	6.54382	7.02165	0.00477081	1.76307e-5	0.0450109	7.68293e-4
chr11	16782070	16782161	5009347	0	-	0.461538	(0.45,0.485]	chr11	484178	5	INTRON	INTRON	PLEKHA7	ENSG00000166689.17	ENST00000531066.6:ENST00000636090.1:ENST00000637162.1	protein_coding	protein_coding	protein_coding	protein_coding	0	147	2	6.36817	6.54375	6.71933	0.00328012	3.97249e-4	0.0367219	0.00741985
chr2	222865774	222865874	1037749	0	+	0.41	(0.39,0.419]	chr2	113180	2	SS5_PROX	SS5_PROX:INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	404	2	5.26105	6.543715000000001	7.82638	0.00116276	8.66238e-6	0.020653	4.63021e-4
chr22	28927580	28927680	7705717	0	+	0.44	(0.419,0.45]	chr22	806321	97	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7:ENST00000402174.5	protein_coding	protein_coding	protein_coding	protein_coding	3	542	2	4.95852	6.543675	8.12883	3.89828e-4	3.38354e-5	0.0113348	0.00123158
chr17	55414532	55414632	6930478	0	-	0.43	(0.419,0.45]	chr17	706229	3	SS3_PROX	SS3_PROX:INTRON	MMD	ENSG00000108960.9	ENST00000262065.8:ENST00000649377.1:ENST00000571578.1	protein_coding	protein_coding	protein_coding	protein_coding	2	921	2	6.35894	6.543435	6.72793	1.66857e-4	1.32395e-6	0.00722822	1.2605e-4
chr7	103099573	103099666	3440563	0	+	0.44086	(0.419,0.45]	chr7	332968	12	UTR3	UTR3:EXON_MRNA	ARMC10	ENSG00000170632.14	ENST00000441711.6:ENST00000454559.5:ENST00000428183.6:ENST00000541300.5:ENST00000425331.5:ENST00000323716.8	protein_coding	protein_coding	protein_coding	protein_coding	0	155	2	5.9918	6.542685	7.09357	0.0162379	8.791e-5	0.0873195	0.00248329
chr11	70764267	70764367	5061924	0	-	0.48	(0.45,0.485]	chr11	492701	464	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	437	2	4.74571	6.54213	8.33855	1.36717e-4	8.41298e-5	0.00649687	0.00240785
chr2	25329717	25329816	1105861	0	-	0.50505	(0.485,0.523]	chr2	120785	6	INTRON	INTRON	DNMT3A	ENSG00000119772.19	ENST00000264709.7:ENST00000321117.10:ENST00000380756.7:ENST00000406659.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	145	2	6.2217	6.54183	6.86196	0.00693912	7.79323e-5	0.0553898	0.00227427
chr6	31735262	31735361	3119438	0	-	0.585859	(0.58,1]	chr6	303332	6	INTRON	INTRON	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000616760.1:ENST00000375784.8	protein_coding	protein_coding	protein_coding	protein_coding	0	141	2	6.34387	6.5416	6.73933	0.00116939	1.61506e-4	0.0206836	0.00387712
chr17	72557125	72557225	6963882	0	-	0.63	(0.58,1]	chr17	710389	227	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	365	2	4.61722	6.5412349999999995	8.46525	0.00168213	1.00519e-7	0.0254081	2.33173e-5
chr16	8640930	8641030	6381029	0	+	0.62	(0.58,1]	chr16	631104	4	SS3_PROX	SS3_PROX:INTRON	METTL22	ENSG00000067365.15	ENST00000163678.11:ENST00000381920.8:ENST00000561758.5:ENST00000568967.5:ENST00000572956.5:ENST00000561993.5:ENST00000563501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	356	2	5.54434	6.541	7.53766	2.01099e-4	2.94146e-6	0.00801053	2.17062e-4
chr3	33087623	33087723	1733031	0	-	0.35	(0.33,0.36]	chr3	179306	100	INTRON	INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	145	2	6.42699	6.54066	6.65433	0.00578704	2.16624e-4	0.0501412	0.00477756
chr19	32983045	32983144	7363828	0	-	0.474747	(0.45,0.485]	chr19	763279	24	INTRON	INTRON	RHPN2	ENSG00000131941.8	ENST00000254260.8:ENST00000544458.6:ENST00000588388.5:ENST00000588683.1:ENST00000592247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	388	2	5.24686	6.540305	7.83375	9.4698e-4	4.9183e-6	0.0184246	3.11937e-4
chr3	78993212	78993312	1837438	0	-	0.34	(0.33,0.36]	chr3	188611	539	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	0	152	2	6.17846	6.540155	6.90185	0.00244473	7.89942e-4	0.0311837	0.0120519
chr14	68899670	68899769	5999336	0	-	0.585859	(0.58,1]	chr14	588704	56	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	389	2	4.92543	6.539885	8.15434	4.47395e-5	2.01267e-5	0.00368958	8.45052e-4
chr13	100232243	100232343	5644416	0	+	0.39	(0.36,0.39]	chr13	554024	224	INTRON	INTRON	PCCA	ENSG00000175198.17	ENST00000376286.8:ENST00000376279.7:ENST00000376285.6:ENST00000647303.1:ENST00000637657.1:ENST00000636366.1:ENST00000636475.1:ENST00000636420.1:ENST00000637358.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	146	2	6.51417	6.539245	6.56432	0.00592387	3.27085e-4	0.0506158	0.00645438
chr2	232900168	232900267	1383840	0	-	0.464646	(0.45,0.485]	chr2	147952	49	INTRON	INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000416114.3:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	385	2	4.92791	6.538575	8.14924	0.00177375	1.79201e-6	0.0262073	1.54577e-4
chr13	110527892	110527992	5750253	0	-	0.47	(0.45,0.485]	chr13	563637	33	INTRON	INTRON	RAB20	ENSG00000139832.5	ENST00000267328.5	protein_coding	protein_coding	protein_coding	protein_coding	0	144	2	6.40899	6.538205	6.66742	0.00574958	1.70557e-4	0.0499659	0.00403679
chr12	11141028	11141127	5372319	0	-	0.333333	(0.33,0.36]	chr12	526879	65	INTRON	INTRON	ENSG00000275778:PRH1:TAS2R14	ENSG00000275778.2:ENSG00000231887.8:ENSG00000212127.6	ENST00000536668.2:ENST00000535024.6:ENST00000541977.5:ENST00000381852.4:ENST00000546265.1:ENST00000541175.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	145	2	6.5336	6.538164999999999	6.54273	0.0047107	3.03099e-4	0.044852	0.00611977
chr6	45354616	45354716	3143481	0	-	0.36	(0.33,0.36]	chr6	306719	313	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5:ENST00000459689.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	145	2	6.5336	6.538164999999999	6.54273	0.0047107	3.03099e-4	0.044852	0.00611977
chr11	72702604	72702704	5069934	0	-	0.59	(0.58,1]	chr11	493380	3	SS5_PROX	SS5_PROX:INTRON	ARAP1	ENSG00000186635.15	ENST00000359373.9:ENST00000393609.8:ENST00000465814.5:ENST00000334211.12:ENST00000393605.7:ENST00000426523.5:ENST00000429686.5:ENST00000427971.6:ENST00000452383.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	292	2	5.84255	6.53772	7.23289	3.89345e-4	4.09275e-6	0.0113333	2.74725e-4
chr17	55277183	55277283	6757230	0	+	0.4	(0.39,0.419]	chr17	681704	87	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	1703	2	5.60466	6.53763	7.4706	1.45827e-5	2.5649e-6	0.00221092	1.97327e-4
chr1	7705189	7705289	17667	0	+	0.66	(0.58,1]	chr1	1925	271	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12	protein_coding	protein_coding	protein_coding	protein_coding	0	143	2	6.23832	6.537585	6.83685	9.44859e-4	2.24165e-4	0.0183873	0.00490779
chr18	46259660	46259759	7056569	0	+	0.585859	(0.58,1]	chr18	720269	55	INTRON	INTRON	C18orf25	ENSG00000152242.11	ENST00000615052.5:ENST00000619301.4	protein_coding	protein_coding	protein_coding	protein_coding	0	140	2	6.3691	6.537205	6.70531	0.00125905	1.49225e-4	0.0215793	0.00367368
chr3	67605655	67605755	1819592	0	-	0.42	(0.419,0.45]	chr3	187519	761	INTRON	INTRON	SUCLG2	ENSG00000172340.15	ENST00000493112.5:ENST00000307227.10:ENST00000492795.1	protein_coding	protein_coding	protein_coding	protein_coding	0	161	2	5.82136	6.537145000000001	7.25293	0.0210659	5.59361e-5	0.0996078	0.00178124
chr1	77711501	77711576	516102	0	-	0.466667	(0.45,0.485]	chr1	60850	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	USP33	ENSG00000077254.14	ENST00000370794.7:ENST00000370793.5:ENST00000357428.5:ENST00000481579.5:ENST00000477949.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	149	2	6.24422	6.537085	6.82995	0.00267274	5.58345e-4	0.0327654	0.00944382
chr12	11039759	11039858	5371293	0	-	0.343434	(0.33,0.36]	chr12	526844	45	INTRON	INTRON	ENSG00000275778:PRH1:TAS2R14	ENSG00000275778.2:ENSG00000231887.8:ENSG00000212127.6	ENST00000536668.2:ENST00000535024.6:ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000381852.4:ENST00000534923.1:ENST00000541456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	323	2	5.63452	6.5365850000000005	7.43865	8.79855e-4	2.71618e-5	0.0176886	0.00104767
chr13	112973241	112973341	5655353	0	+	0.42	(0.419,0.45]	chr13	555120	34	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	151	2	6.26235	6.535444999999999	6.80854	0.00425752	8.27298e-4	0.0422596	0.0124589
chr5	860953	861053	2607964	0	-	0.54	(0.523,0.58]	chr5	259417	100	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	0	144	2	6.22127	6.53486	6.84845	0.00699217	7.65992e-5	0.0555241	0.00224403
chr2	235521525	235521625	1062811	0	+	0.41	(0.39,0.419]	chr2	115651	263	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	333	2	5.17034	6.53462	7.8989	4.82803e-4	1.25091e-4	0.0127255	0.00324257
chr19	16368158	16368258	7343611	0	-	0.42	(0.419,0.45]	chr19	760668	58	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	444	2	5.01485	6.5343350000000004	8.05382	4.48848e-4	5.71536e-5	0.0121771	0.00180869
chr16	89915440	89915540	6526332	0	+	0.6	(0.58,1]	chr16	647719	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000267048:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000555427.1:ENST00000639847.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	0	145	2	5.95454	6.5343	7.11406	0.0059453	1.2868e-5	0.0506158	6.14919e-4
chr3	48926237	48926333	1464998	0	+	0.53125	(0.523,0.58]	chr3	156606	9	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000452882.5:ENST00000498314.5:ENST00000474618.5:ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000420814.5:ENST00000486316.5:ENST00000449729.5:ENST00000433170.5:ENST00000474936.6:ENST00000466850.1:ENST00000484999.5:ENST00000470296.5:ENST00000463204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	375	2	4.97184	6.53366	8.09548	0.00143593	1.43168e-6	0.0232366	1.32769e-4
chr16	47214873	47214972	6583329	0	-	0.454545	(0.45,0.485]	chr16	658281	519	INTRON	INTRON	ITFG1	ENSG00000129636.13	ENST00000568047.5:ENST00000320640.11:ENST00000537184.6:ENST00000542691.5:ENST00000567957.1:ENST00000544001.6:ENST00000565262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	145	2	6.41491	6.533495	6.65208	0.00371059	0.00034885200000000003	0.039096	0.00674746
chr2	199935630	199935730	1354126	0	-	0.4	(0.39,0.419]	chr2	143796	3	SS5_PROX	SS5_PROX:INTRON	TYW5	ENSG00000162971.11	ENST00000354611.9:ENST00000483328.5:ENST00000452512.6:ENST00000441832.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	148	2	6.17597	6.53337	6.89077	0.0107103	1.33877e-4	0.0701493	0.0033877
chr2	239290870	239290970	1391617	0	-	0.44	(0.419,0.45]	chr2	148740	393	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	149	2	6.16812	6.53327	6.89842	0.0123115	1.51593e-4	0.0756356	0.00370696
chr1	246233923	246234023	703124	0	-	0.43	(0.419,0.45]	chr1	82422	403	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	159	2	5.8512	6.532955	7.21471	0.0201381	6.2377e-5	0.0973365	0.00192539
chr16	28870979	28871079	6431885	0	+	0.53	(0.523,0.58]	chr16	636600	12	INTRON	INTRON	SH2B1	ENSG00000178188.15	ENST00000322610.12:ENST00000337120.9:ENST00000545570.5:ENST00000618521.4:ENST00000359285.9:ENST00000538342.5:ENST00000684370.1:ENST00000563674.1:ENST00000395532.8:ENST00000566176.5:ENST00000561629.1:ENST00000569471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	152	2	6.09678	6.532954999999999	6.96913	0.0017332	6.74499e-4	0.0257605	0.0108081
chr3	58103193	58103281	1483999	0	+	0.556818	(0.523,0.58]	chr3	159632	5	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1:ENST00000493452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	162	2	5.8779	6.53289	7.18788	0.00121652	0.00112897	0.0202727	0.0162693
chr10	4982095	4982194	4438644	0	+	0.454545	(0.45,0.485]	chr10	424890	45	UTR3	UTR3:EXON_MRNA	AKR1C1	ENSG00000187134.14	ENST00000380872.9	protein_coding	protein_coding	protein_coding	protein_coding	2	423	2	5.15917	6.532225	7.90528	3.30071e-4	2.32668e-5	0.0103581	9.36813e-4
chr7	95417584	95417682	3641293	0	-	0.438776	(0.419,0.45]	chr7	350622	9	INTRON	INTRON	PON2	ENSG00000105854.13	ENST00000222572.8:ENST00000633531.1:ENST00000455123.5:ENST00000433091.6:ENST00000633192.1:ENST00000446142.5:ENST00000469926.5:ENST00000491069.5:ENST00000490778.5:ENST00000632034.1:ENST00000493290.5:ENST00000478801.5:ENST00000460873.5:ENST00000493469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	148	2	6.21478	6.5320800000000006	6.84938	0.011428	1.73559e-4	0.0723462	0.0040962
chr16	85398732	85398832	6517058	0	+	0.53	(0.523,0.58]	chr16	646391	394	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	153	2	6.06747	6.5320599999999995	6.99665	0.00164293	7.30845e-4	0.0250898	0.0113963
chr18	79357259	79357359	7099858	0	+	0.65	(0.58,1]	chr18	722963	87	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000426216.6:ENST00000307671.12:ENST00000490210.6:ENST00000590477.5:ENST00000589951.5:ENST00000588921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	287	2	5.47327	6.53197	7.59067	1.70527e-4	1.50711e-5	0.00729818	6.87246e-4
chr17	43546714	43546814	6739032	0	+	0.63	(0.58,1]	chr17	678633	15	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	381	2	5.17096	6.5316399999999994	7.89232	8.37496e-5	8.46637e-6	0.00507439	4.56613e-4
chr9	137780413	137780511	4266113	0	+	0.55102	(0.523,0.58]	chr9	407438	3	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	374	2	5.08867	6.531525	7.97438	0.00113504	2.13789e-6	0.0203553	1.744e-4
chr13	33181187	33181287	5684407	0	-	0.41	(0.39,0.419]	chr13	558186	132	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000399365.7:ENST00000255486.8:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	150	2	6.07786	6.531505	6.98515	0.012565	1.02541e-4	0.0761905	0.00278573
chr8	9771968	9772068	3754896	0	+	0.61	(0.58,1]	chr8	360882	2	SS3_PROX	SS3_PROX:INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	1	340	2	4.70869	6.5314499999999995	8.35421	1.95782e-4	2.75934e-5	0.00445752	0.00296016
chr7	47475906	47476006	3588567	0	-	0.54	(0.523,0.58]	chr7	346123	228	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	143	2	6.45466	6.53126	6.60786	0.00345115	2.45921e-4	0.037649	0.00524396
chr15	64989455	64989506	6301671	0	-	0.627451	(0.58,1]	chr15	621085	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SPG21	ENSG00000090487.11	ENST00000204566.7:ENST00000433215.6:ENST00000561078.5:ENST00000416889.6:ENST00000558765.5:ENST00000557795.5:ENST00000560564.1:ENST00000559677.5:ENST00000558415.5:ENST00000558339.1:ENST00000561088.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	137	2	6.44159	6.5312149999999995	6.62084	0.00221069	6.67603e-5	0.0295736	0.00202861
chr16	85589130	85589230	6518964	0	+	0.64	(0.58,1]	chr16	646396	324	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	137	2	6.46212	6.530905	6.59969	0.00211728	7.15008e-5	0.028892	0.00213784
chr20	32144491	32144590	7454526	0	+	0.585859	(0.58,1]	chr20	775941	10	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	0	137	2	6.46212	6.530905	6.59969	0.00211728	7.15008e-5	0.028892	0.00213784
chrX	48988020	48988120	8041226	0	-	0.59	(0.58,1]	chrX	838892	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GRIPAP1	ENSG00000068400.13	ENST00000376423.8:ENST00000622599.4:ENST00000593475.5:ENST00000611757.4:ENST00000473581.5:ENST00000474512.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	137	2	6.46212	6.530905	6.59969	0.00211728	7.15008e-5	0.028892	0.00213784
chr1	89883135	89883235	181322	0	+	0.54	(0.523,0.58]	chr1	19585	361	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	0	142	2	6.47717	6.53082	6.58447	0.00439843	1.68436e-4	0.0429852	0.00400681
chr10	18572856	18572956	4642457	0	-	0.39	(0.36,0.39]	chr10	443321	205	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	145	2	6.39688	6.52986	6.66284	0.00723998	2.49931e-4	0.0565323	0.00531531
chr14	68952733	68952833	5999881	0	-	0.49	(0.485,0.523]	chr14	588759	53	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6:ENST00000683261.1:ENST00000553370.5:ENST00000682602.1:ENST00000556571.1:ENST00000553659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	142	2	6.43798	6.52982	6.62166	0.00469187	1.59261e-4	0.0447158	0.00385073
chr3	24385407	24385507	1715380	0	-	0.51	(0.485,0.523]	chr3	178004	364	INTRON	INTRON	THRB	ENSG00000151090.20	ENST00000646209.2:ENST00000396671.7:ENST00000356447.9:ENST00000646432.1:ENST00000643772.1:ENST00000645139.1:ENST00000642307.1:ENST00000644321.1:ENST00000646966.1:ENST00000416420.5:ENST00000413780.5:ENST00000447875.5:ENST00000453729.6:ENST00000431815.5:ENST00000447414.5:ENST00000428492.5:ENST00000418247.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	142	2	6.41776	6.529695	6.64163	0.00486906	1.50187e-4	0.0456282	0.0036849
chr2	240625768	240625868	1075201	0	+	0.61	(0.58,1]	chr2	116657	2	SS5_PROX	SS5_PROX:INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2:ENST00000407714.2	protein_coding	protein_coding	protein_coding	protein_coding	0	142	2	6.23832	6.52968	6.82104	9.78215e-4	2.24165e-4	0.0187475	0.00490779
chr17	57648153	57648252	6763705	0	+	0.515152	(0.485,0.523]	chr17	682183	151	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000675656.1:ENST00000442934.6:ENST00000579505.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	142	2	6.45793	6.529665	6.6014	0.00452302	1.68998e-4	0.0436138	0.0040111
chr1	101021863	101021961	552587	0	-	0.397959	(0.39,0.419]	chr1	63437	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DPH5	ENSG00000117543.22	ENST00000370109.8:ENST00000370105.7:ENST00000427040.3:ENST00000690716.1:ENST00000488789.5:ENST00000481871.5:ENST00000464270.5:ENST00000342173.11:ENST00000466807.5:ENST00000477293.5:ENST00000498372.5:ENST00000488176.1:ENST00000490732.5:ENST00000476507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	145	2	6.45534	6.52965	6.60396	0.00671435	2.96245e-4	0.0541693	0.00602194
chr7	75934010	75934110	3396795	0	+	0.28	[0,0.29]	chr7	328054	107	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000449920.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	415	2	4.69488	6.529335	8.36379	6.8064e-5	3.27584e-5	0.00320213	0.00205743
chr7	102042042	102042142	3436235	0	+	0.44	(0.419,0.45]	chr7	332534	135	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	147	2	6.25998	6.52929	6.7986	0.0106277	1.99513e-4	0.0698136	0.00452558
chr19	33506757	33506857	7365921	0	-	0.5	(0.485,0.523]	chr19	763467	54	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000651646.1:ENST00000590408.1:ENST00000593163.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	142	2	6.4776	6.52923	6.58086	0.00436205	1.79455e-4	0.0427656	0.00418827
chr4	2813643	2813738	2000242	0	+	0.421053	(0.419,0.45]	chr4	203927	8	INTRON	INTRON	SH3BP2	ENSG00000087266.17	ENST00000503219.5:ENST00000512131.5:ENST00000503393.8:ENST00000510074.5:ENST00000511237.5:ENST00000504294.5:ENST00000508385.5:ENST00000513020.5:ENST00000511663.5:ENST00000512014.5:ENST00000513095.5:ENST00000502260.5:ENST00000435136.8:ENST00000511185.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	177	2	5.52073	6.529005	7.53728	0.0327198	2.46099e-5	0.122543	9.771e-4
chr13	113332870	113332970	5753259	0	-	0.54	(0.523,0.58]	chr13	564094	64	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	0	143	2	6.24442	6.528995	6.81357	0.00670944	8.51182e-5	0.0541591	0.00242869
chr16	85400431	85400531	6517075	0	+	0.48	(0.45,0.485]	chr16	646391	411	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	157	2	5.99015	6.528995	7.06784	0.00170784	0.00110015	0.025659	0.015136
chr5	131521721	131521821	2756177	0	-	0.36	(0.33,0.36]	chr5	270111	2	SS3_PROX	SS3_PROX:INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000514179.5:ENST00000513227.5:ENST00000504575.5:ENST00000504039.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	145	2	6.25665	6.52884	6.80103	0.00779158	1.4311e-4	0.0590197	0.00355964
chr7	158916188	158916285	3523151	0	+	0.402062	(0.39,0.419]	chr7	340293	15	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	147	2	6.36745	6.5283750000000005	6.6893	0.00448396	5.58995e-4	0.0436138	0.00944382
chr22	41370090	41370190	7732664	0	+	0.44	(0.419,0.45]	chr22	810423	21	INTRON	INTRON	TEF	ENSG00000167074.15	ENST00000406644.7	protein_coding	protein_coding	protein_coding	protein_coding	0	146	2	6.34633	6.528065	6.7098	0.00923958	2.54121e-4	0.0644666	0.00539144
chr17	78718122	78718222	6978671	0	-	0.54	(0.523,0.58]	chr17	712611	12	INTRON	INTRON	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000589297.5:ENST00000591574.5:ENST00000590775.5:ENST00000589768.5:ENST00000586043.5:ENST00000587308.5:ENST00000590300.1:ENST00000591095.1:ENST00000592497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	145	2	6.312	6.52801	6.74402	0.00267018	3.69994e-4	0.0327654	0.00704866
chr16	977855	977955	6531817	0	-	0.48	(0.45,0.485]	chr16	648726	70	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000545827.6:ENST00000570014.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	143	2	6.48824	6.52788	6.56752	0.00499158	2.2698e-4	0.0463896	0.00495264
chr9	81660917	81661017	4322663	0	-	0.53	(0.523,0.58]	chr9	413017	65	INTRON	INTRON	TLE1	ENSG00000196781.16	ENST00000376499.8:ENST00000418319.5:ENST00000376463.3:ENST00000674113.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	163	2	5.84373	6.5276499999999995	7.21157	0.00133116	0.00107726	0.0197563	0.0173248
chr1	23393678	23393778	424252	0	-	0.52	(0.485,0.523]	chr1	49808	4	SS5_PROX	SS5_PROX:INTRON	TCEA3	ENSG00000204219.11	ENST00000450454.7:ENST00000476978.2	protein_coding	protein_coding	protein_coding	protein_coding	0	143	2	6.24485	6.5274	6.80995	0.00665813	9.11162e-5	0.0540577	0.00255001
chr13	113012664	113012764	5655750	0	+	0.64	(0.58,1]	chr13	555138	103	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	349	2	5.47294	6.52721	7.58148	2.38022e-4	2.51802e-6	0.00868928	1.94522e-4
chr14	99562837	99562936	6052500	0	-	0.50505	(0.485,0.523]	chr14	593891	264	INTRON	INTRON	CCDC85C	ENSG00000205476.9	ENST00000380243.9:ENST00000554996.5:ENST00000554877.1:ENST00000556348.1	protein_coding	protein_coding	protein_coding	protein_coding	0	143	2	6.42823	6.52713	6.62603	0.00330946	2.78987e-4	0.0368376	0.00577243
chr19	47228646	47228746	7392368	0	-	0.63	(0.58,1]	chr19	768105	2	SS3_PROX	SS3_PROX:INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	1	339	2	5.14569	6.52703	7.90837	5.105e-4	7.78745e-7	0.0131229	8.90314e-5
chr11	70945910	70946010	5063750	0	-	0.57	(0.523,0.58]	chr11	492740	490	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000618363.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	146	2	6.26113	6.526535	6.79194	0.00243746	4.27166e-4	0.0311222	0.00779962
chr10	18568959	18569059	4642418	0	-	0.37	(0.36,0.39]	chr10	443321	166	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	145	2	6.50181	6.5265249999999995	6.55124	0.0055566	3.87323e-4	0.049265	0.00729662
chr6	105402446	105402546	3217225	0	-	0.5	(0.485,0.523]	chr6	312303	2	SS5_PROX	SS5_PROX:INTRON	PREP	ENSG00000085377.15	ENST00000652536.2:ENST00000369110.8	protein_coding	protein_coding	protein_coding	protein_coding	0	142	2	6.33389	6.526385	6.71888	0.00567224	1.19549e-4	0.0496143	0.00313373
chr21	43604670	43604770	7677117	0	-	0.54	(0.523,0.58]	chr21	802562	120	INTRON	INTRON	HSF2BP	ENSG00000160207.9	ENST00000291560.7	protein_coding	protein_coding	protein_coding	protein_coding	0	150	2	6.1255	6.526165	6.92683	0.00188118	6.23263e-4	0.0270971	0.0101764
chr20	13467135	13467235	7526225	0	-	0.34	(0.33,0.36]	chr20	785591	316	INTRON	INTRON	TASP1	ENSG00000089123.16	ENST00000480436.5:ENST00000337743.9:ENST00000465381.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	145	2	6.23387	6.526115	6.81836	0.00810355	1.36209e-4	0.0602166	0.00344204
chr11	28310908	28311008	4825435	0	+	0.6	(0.58,1]	chr11	461886	136	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	146	2	6.0945	6.525945	6.95739	7.23847e-4	3.47472e-4	0.0158739	0.00673552
chr9	134413385	134413484	4261567	0	+	0.525253	(0.523,0.58]	chr9	406352	39	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000481739.2:ENST00000356384.4:ENST00000672570.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	152	2	6.06747	6.5252099999999995	6.98295	0.00168728	7.30845e-4	0.0254298	0.0113963
chr16	29275011	29275111	6433587	0	+	0.61	(0.58,1]	chr16	636745	229	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	156	2	5.86553	6.52492	7.18431	6.8352e-4	4.34792e-4	0.0119405	0.0108717
chr22	42648994	42649094	7821322	0	-	0.8	(0.58,1]	chr22	820392	3	SS5_PROX	SS5_PROX:INTRON	CYB5R3	ENSG00000100243.22	ENST00000693367.1:ENST00000352397.10:ENST00000361740.9:ENST00000692152.1:ENST00000693363.1:ENST00000689795.1:ENST00000686523.1:ENST00000407332.6:ENST00000687183.1:ENST00000691295.1:ENST00000690835.1:ENST00000689195.1:ENST00000688244.1:ENST00000690993.1:ENST00000689239.1:ENST00000692344.1:ENST00000686129.1:ENST00000466276.2:ENST00000693716.1:ENST00000688004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	156	2	5.86553	6.52492	7.18431	6.8352e-4	4.34792e-4	0.0119405	0.0108717
chr2	3503486	3503586	1081960	0	-	0.51	(0.485,0.523]	chr2	117683	21	INTRON	INTRON	ADI1	ENSG00000182551.14	ENST00000327435.11:ENST00000382093.5	protein_coding	protein_coding	protein_coding	protein_coding	0	149	2	5.96717	6.524875	7.08258	0.0108319	3.97904e-5	0.0707085	0.00138788
chr6	2209456	2209556	3084978	0	-	0.44	(0.419,0.45]	chr6	299526	336	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5	protein_coding	protein_coding	protein_coding	protein_coding	1	329	2	5.54335	6.52486	7.50637	0.00123559	4.7262e-5	0.0213594	0.00158337
chr7	138545580	138545679	3502864	0	+	0.40404	(0.39,0.419]	chr7	337534	64	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	147	2	6.34389	6.5248550000000005	6.70582	0.00435618	5.94847e-4	0.0427656	0.0098913
chr17	17591030	17591130	6865587	0	-	0.61	(0.58,1]	chr17	695837	1	SS5_PROX	SS5_PROX:INTRON	PEMT	ENSG00000133027.18	ENST00000255389.10:ENST00000435340.6:ENST00000395781.6:ENST00000580147.5:ENST00000421096.5:ENST00000472446.1:ENST00000461404.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	137	2	6.48899	6.524775	6.56056	0.00171861	1.02074e-4	0.025659	0.00277572
chr4	2825875	2825965	2000377	0	+	0.566667	(0.523,0.58]	chr4	203974	3	INTRON	INTRON	SH3BP2	ENSG00000087266.17	ENST00000503393.8:ENST00000504294.5:ENST00000508385.5:ENST00000511663.5:ENST00000512014.5:ENST00000435136.8:ENST00000511185.5:ENST00000511747.6:ENST00000356331.9:ENST00000515737.5:ENST00000515183.5:ENST00000505941.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	153	2	5.85087	6.5247399999999995	7.19861	0.0132767	2.60365e-5	0.0787251	0.00101533
chr16	29272612	29272712	6433563	0	+	0.59	(0.58,1]	chr16	636745	205	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	154	2	5.90055	6.52366	7.14677	6.1741e-4	4.73371e-4	0.0125708	0.0101143
chr2	121480016	121480116	1262526	0	-	0.47	(0.45,0.485]	chr2	136083	97	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	145	2	6.34422	6.523515	6.70281	0.00338129	4.24458e-4	0.0371948	0.00777807
chr16	953408	953497	6531567	0	-	0.606742	(0.58,1]	chr16	648705	4	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1:ENST00000566609.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	148	2	6.03271	6.523395	7.01408	6.3791e-4	4.18183e-4	0.0148365	0.00770005
chr2	69458690	69458789	1175353	0	-	0.434343	(0.419,0.45]	chr2	127945	8	UTR3	UTR3:EXON_MRNA	AAK1	ENSG00000115977.21	ENST00000409085.9:ENST00000606389.7	protein_coding	protein_coding	protein_coding	protein_coding	0	146	2	6.44952	6.522695	6.59587	0.00611222	5.09118e-4	0.0517172	0.00884498
chr9	114204001	114204101	4226192	0	+	0.5	(0.485,0.523]	chr9	400776	76	INTRON	INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8:ENST00000451716.5:ENST00000494090.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	157	2	5.75784	6.52224	7.28664	0.0154142	2.11074e-5	0.0849828	8.73346e-4
chr9	123674242	123674341	4399329	0	-	0.515152	(0.485,0.523]	chr9	419698	25	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1:ENST00000474676.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	145	2	6.28319	6.521895000000001	6.7606	0.00256606	4.20832e-4	0.0320885	0.00773187
chr6	56503596	56503696	3152657	0	-	0.41	(0.39,0.419]	chr6	307578	2	SS5_PROX	SS5_PROX:INTRON	DST	ENSG00000151914.22	ENST00000244364.10:ENST00000312431.10:ENST00000421834.6:ENST00000680361.1:ENST00000370788.6:ENST00000520645.6:ENST00000651790.1:ENST00000340834.10:ENST00000361203.7	protein_coding	protein_coding	protein_coding	protein_coding	0	151	2	6.16727	6.52165	6.87603	0.00322454	9.41833e-4	0.0362983	0.0135546
chr16	78829040	78829140	6502709	0	+	0.46	(0.45,0.485]	chr16	645717	487	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	151	2	5.93034	6.52136	7.11238	0.0130794	4.5955e-5	0.0782396	0.00154731
chr3	49780276	49780376	1773982	0	-	0.43	(0.419,0.45]	chr3	183906	315	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	440	2	5.00172	6.521324999999999	8.04093	4.59832e-4	5.94005e-5	0.0123493	0.00185705
chr16	57376381	57376479	6466028	0	+	0.438776	(0.419,0.45]	chr16	641365	34	INTRON	INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1	protein_coding	protein_coding	protein_coding	protein_coding	0	148	2	6.31147	6.5209399999999995	6.73041	0.00486702	7.29222e-4	0.0456282	0.0113963
chr11	3839567	3839667	4975291	0	-	0.52	(0.485,0.523]	chr11	481754	18	INTRON	INTRON	RHOG	ENSG00000177105.10	ENST00000351018.5:ENST00000396978.1	protein_coding	protein_coding	protein_coding	protein_coding	0	142	2	6.26763	6.52092	6.77421	0.00639185	1.01398e-4	0.0529032	0.00276585
chr1	119994463	119994563	572049	0	-	0.38	(0.36,0.39]	chr1	65717	70	INTRON	INTRON	NOTCH2	ENSG00000134250.21	ENST00000256646.7:ENST00000479412.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	145	2	6.43646	6.52079	6.60512	0.00506051	4.61522e-4	0.0465519	0.00824056
chr1	155490643	155490743	597018	0	-	0.5	(0.485,0.523]	chr1	70084	78	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	142	2	6.45105	6.52069	6.59033	0.00353829	2.61322e-4	0.0381878	0.00551565
chr18	48846610	48846710	7059744	0	+	0.44	(0.419,0.45]	chr18	720358	289	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000587860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	146	2	6.25998	6.52063	6.78128	0.0106277	2.09196e-4	0.0698136	0.0046683
chr17	29273417	29273517	6877156	0	-	0.54	(0.523,0.58]	chr17	698051	55	INTRON	INTRON	NUFIP2	ENSG00000108256.9	ENST00000225388.9:ENST00000579665.1	protein_coding	protein_coding	protein_coding	protein_coding	0	144	2	6.12478	6.52028	6.91578	0.00829271	6.24234e-5	0.0610772	0.00192539
chr1	171514235	171514335	274379	0	+	0.35	(0.33,0.36]	chr1	32006	3	SS3_PROX	SS3_PROX:INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1:ENST00000463586.1:ENST00000426496.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	143	2	6.48602	6.52023	6.55444	0.00521233	2.86128e-4	0.0475559	0.00586813
chr10	131958146	131958245	4616609	0	+	0.59596	(0.58,1]	chr10	441116	23	UTR3	UTR3:EXON_MRNA	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	136	2	6.37822	6.52023	6.66224	0.00252415	5.8343e-5	0.031696	0.00183149
chr7	102041942	102042042	3436234	0	+	0.42	(0.419,0.45]	chr7	332534	134	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	328	2	5.33282	6.520099999999999	7.70738	8.55002e-4	8.70769e-5	0.0173903	0.00246864
chr6	126154334	126154434	3004366	0	+	0.42	(0.419,0.45]	chr6	293834	381	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000648977.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	331	2	5.66086	6.51993	7.379	0.00155644	3.34728e-5	0.0243306	0.00122396
chr13	98415716	98415816	5636426	0	+	0.51	(0.485,0.523]	chr13	553617	33	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000457029.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	324	2	5.02096	6.51975	8.01854	2.05799e-4	1.27893e-4	0.00809983	0.00328053
chr1	62266431	62266531	497491	0	-	0.56	(0.523,0.58]	chr1	59360	3	SS5_PROX	SS5_PROX:INTRON	KANK4	ENSG00000132854.19	ENST00000371153.9:ENST00000354381.3:ENST00000371150.5	protein_coding	protein_coding	protein_coding	protein_coding	0	143	2	6.17383	6.519705	6.86558	0.00760615	7.2723e-5	0.0579698	0.00216169
chr8	503788	503888	3931442	0	-	0.56	(0.523,0.58]	chr8	375980	88	INTRON	INTRON	TDRP	ENSG00000180190.13	ENST00000523656.5:ENST00000324079.11	protein_coding	protein_coding	protein_coding	protein_coding	0	141	2	6.49658	6.51953	6.54248	0.00424382	1.90498e-4	0.0422099	0.0043642
chr19	16368656	16368756	7343616	0	-	0.46	(0.45,0.485]	chr19	760668	63	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	840	2	6.38081	6.519495	6.65818	9.34073e-5	8.3919e-7	0.00538091	9.36469e-5
chr10	131957352	131957451	4616601	0	+	0.616162	(0.58,1]	chr10	441116	15	UTR3	UTR3:EXON_MRNA	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000470416.5:ENST00000649083.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	285	2	5.42945	6.5193200000000004	7.60919	1.63302e-4	1.75493e-5	0.00716861	7.66163e-4
chr11	484556	484655	4784651	0	+	0.545455	(0.523,0.58]	chr11	457913	41	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	145	2	6.074	6.519145	6.96429	0.00906277	5.38186e-5	0.0637469	0.0017322
chr2	25329617	25329717	1105860	0	-	0.53	(0.523,0.58]	chr2	120785	5	INTRON	INTRON	DNMT3A	ENSG00000119772.19	ENST00000264709.7:ENST00000321117.10:ENST00000380756.7:ENST00000406659.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	145	2	6.074	6.519145	6.96429	0.00906277	5.38186e-5	0.0637469	0.0017322
chr9	134369075	134369175	4261114	0	+	0.56	(0.523,0.58]	chr9	406311	421	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	149	2	6.1255	6.518974999999999	6.91245	0.00193417	6.23263e-4	0.0275437	0.0101764
chr17	81137699	81137799	6982879	0	-	0.49	(0.485,0.523]	chr17	713268	28	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	141	2	6.37643	6.518885	6.66134	0.0052506	1.41724e-4	0.0476984	0.00352935
chr15	22558689	22558789	6059861	0	+	0.45	(0.419,0.45]	chr15	594971	12	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	401	2	4.8408	6.518815	8.19683	0.00287888	3.45804e-6	0.0341432	2.43711e-4
chrX	1417177	1417275	7965651	0	-	0.510204	(0.485,0.523]	chrX	834254	40	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	141	2	6.4776	6.51881	6.56002	0.00436205	1.90696e-4	0.0427656	0.0043642
chr20	36315102	36315202	7469138	0	+	0.51	(0.485,0.523]	chr20	777805	82	INTRON	INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10	protein_coding	protein_coding	protein_coding	protein_coding	0	144	2	6.12521	6.518685	6.91216	0.00823189	6.69654e-5	0.0608959	0.00203052
chr17	72555429	72555529	6963865	0	-	0.38	(0.36,0.39]	chr17	710389	210	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	147	2	6.12911	6.51831	6.90751	0.0113159	1.26468e-4	0.0722887	0.00325863
chr1	150236063	150236156	585559	0	-	0.612903	(0.58,1]	chr1	67638	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANP32E	ENSG00000143401.15	ENST00000583931.6:ENST00000629042.2:ENST00000369114.9:ENST00000369115.3:ENST00000532744.2	protein_coding	protein_coding	protein_coding	protein_coding	0	146	2	6.06394	6.517855	6.97177	7.01049e-4	3.80904e-4	0.0156107	0.00721291
chr3	186631802	186631902	1975618	0	-	0.43	(0.419,0.45]	chr3	200792	17	INTRON	INTRON	ENSG00000197099	ENSG00000197099.8	ENST00000630178.2:ENST00000625386.2:ENST00000628505.2	lncRNA	lncRNA	lncRNA	lncRNA	0	146	2	6.40495	6.517825	6.6307	0.00576404	5.72149e-4	0.0500197	0.00960229
chr13	111185725	111185819	5651305	0	+	0.606383	(0.58,1]	chr13	554738	1	INTRON	INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000449979.5:ENST00000491775.5:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8:ENST00000467053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	137	2	6.21852	6.51771	6.8169	0.00350812	3.50609e-5	0.0379357	0.00126332
chr9	6942226	6942315	4116803	0	+	0.382022	(0.36,0.39]	chr9	391901	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000438023.5:ENST00000381306.7:ENST00000381309.8:ENST00000543771.5:ENST00000496464.1:ENST00000428870.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	146	2	6.34447	6.51757	6.69067	0.00435707	5.89187e-4	0.0427656	0.00981079
chr11	121479142	121479242	4953924	0	+	0.62	(0.58,1]	chr11	478664	5	INTRON	INTRON	SORL1	ENSG00000137642.13	ENST00000260197.12:ENST00000532451.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	166	2	5.67642	6.51752	7.35862	0.00117039	2.92006e-4	0.0157899	0.00970248
chr5	1103306	1103405	2608884	0	-	0.616162	(0.58,1]	chr5	259667	87	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	0	137	2	6.41826	6.51741	6.61656	0.00152464	1.27804e-4	0.0240691	0.00328053
chr13	93276507	93276607	5618277	0	+	0.53	(0.523,0.58]	chr13	553052	485	INTRON	INTRON	GPC6	ENSG00000183098.11	ENST00000377047.9	protein_coding	protein_coding	protein_coding	protein_coding	1	334	2	6.12235	6.5174	6.91245	0.00193417	3.62902e-6	0.0275437	2.52791e-4
chr10	79175116	79175216	4533108	0	+	0.51	(0.485,0.523]	chr10	432438	126	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	151	2	6.06388	6.51672	6.96956	0.00171649	7.70737e-4	0.025659	0.0118331
chr3	134204573	134204672	1919869	0	-	0.464646	(0.45,0.485]	chr3	195284	13	INTRON	INTRON	RYK	ENSG00000163785.13	ENST00000623711.4:ENST00000460933.5:ENST00000620660.4:ENST00000464879.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	147	2	6.2181	6.51638	6.81466	0.00274987	5.99406e-4	0.0332418	0.00993857
chr19	941521	941621	7185261	0	+	0.5	(0.485,0.523]	chr19	730741	84	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	308	2	5.33576	6.51604	7.69632	4.00919e-4	4.84006e-5	0.0114335	0.00160761
chr16	81544481	81544581	6508738	0	+	0.53	(0.523,0.58]	chr16	645911	486	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	315	2	5.13287	6.516019999999999	7.89917	2.66882e-4	8.7318e-5	0.0092576	0.00247172
chr17	50461786	50461885	6752057	0	+	0.565657	(0.523,0.58]	chr17	680706	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACSF2	ENSG00000167107.13	ENST00000510410.5:ENST00000300441.9:ENST00000504392.5:ENST00000506582.5:ENST00000427954.6:ENST00000502667.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	310	2	5.76279	6.51596	7.26913	9.60886e-4	1.18162e-5	0.0185615	5.79919e-4
chr10	18564062	18564162	4642369	0	-	0.38	(0.36,0.39]	chr10	443321	117	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	144	2	6.31302	6.515945	6.71887	0.00834137	2.14172e-4	0.0613342	0.00475596
chr2	164970690	164970790	941792	0	+	0.41	(0.39,0.419]	chr2	103900	77	INTRON	INTRON	ENSG00000236283	ENSG00000236283.5	ENST00000670672.1:ENST00000638199.1:ENST00000414885.2:ENST00000662281.1:ENST00000627211.2:ENST00000629991.2	lncRNA	lncRNA	lncRNA	lncRNA	0	152	2	6.11256	6.515865	6.91917	0.00298544	0.00108325	0.0348268	0.0149525
chrX	65516623	65516719	8055040	0	-	0.427083	(0.419,0.45]	chrX	840752	13	INTRON	INTRON	LAS1L	ENSG00000001497.18	ENST00000677056.1:ENST00000677969.1:ENST00000374811.8:ENST00000374807.9:ENST00000677834.1:ENST00000484069.1:ENST00000374804.9:ENST00000677986.1:ENST00000677087.1:ENST00000679056.1:ENST00000679261.1:ENST00000678074.1:ENST00000678705.1:ENST00000679277.1:ENST00000677154.1:ENST00000678547.1:ENST00000678956.1:ENST00000679116.1:ENST00000678848.1:ENST00000678173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	327	2	5.3138	6.514654999999999	7.71551	8.42277e-4	9.19746e-5	0.0172456	0.00256719
chr14	95407763	95407862	6048854	0	-	0.50505	(0.485,0.523]	chr14	593438	6	UTR3	UTR3:EXON_MRNA	SYNE3	ENSG00000176438.13	ENST00000682763.1:ENST00000557275.5	protein_coding	protein_coding	protein_coding	protein_coding	1	375	2	5.27996	6.514635	7.74931	7.63669e-4	4.82922e-6	0.0163574	3.08032e-4
chr10	132756072	132756172	4619033	0	+	0.54	(0.523,0.58]	chr10	441201	22	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	0	142	2	6.19774	6.514424999999999	6.83111	0.0072907	8.07247e-5	0.0567247	0.00233145
chr2	54206999	54207099	797283	0	+	0.29	[0,0.29]	chr2	90756	638	INTRON	INTRON	ACYP2	ENSG00000170634.13	ENST00000607452.6:ENST00000394666.7:ENST00000303536.8:ENST00000494922.6:ENST00000606865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	138	2	6.32763	6.514135	6.70064	0.00311871	9.34859e-5	0.0356998	0.00260461
chr3	53001908	53002008	1782937	0	-	0.43	(0.419,0.45]	chr3	185809	323	INTRON	INTRON	SFMBT1	ENSG00000163935.14	ENST00000394752.8:ENST00000482396.5:ENST00000483069.5:ENST00000497586.5:ENST00000470575.5:ENST00000474837.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	145	2	6.28205	6.5140150000000006	6.74598	0.0102557	2.30334e-4	0.0684871	0.00498593
chr7	127908310	127908410	3470806	0	+	0.45	(0.419,0.45]	chr7	335407	31	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	398	2	4.92553	6.51392	8.10231	0.00247058	4.60051e-6	0.0313832	2.97168e-4
chr19	16132111	16132211	7216460	0	+	0.46	(0.45,0.485]	chr19	737379	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RAB8A	ENSG00000167461.12	ENST00000300935.8:ENST00000586682.1:ENST00000592971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	146	2	6.24422	6.5139	6.78358	0.00291315	5.58345e-4	0.0342042	0.00944382
chr13	100162024	100162124	5643712	0	+	0.47	(0.45,0.485]	chr13	554018	5	INTRON	INTRON	PCCA	ENSG00000175198.17	ENST00000376286.8:ENST00000376279.7:ENST00000376285.6:ENST00000647303.1:ENST00000637657.1:ENST00000636366.1:ENST00000636475.1:ENST00000636420.1:ENST00000637358.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	142	2	6.4823	6.513625	6.54495	0.00450754	2.88849e-4	0.0436138	0.00590733
chr17	748785	748879	6824475	0	-	0.531915	(0.523,0.58]	chr17	689919	9	UTR5	UTR5:EXON_MRNA:INTRON	GEMIN4	ENSG00000179409.11	ENST00000319004.6:ENST00000576778.1:ENST00000437269.1:ENST00000573482.5:ENST00000570364.5:ENST00000576383.1:ENST00000574958.1	protein_coding	protein_coding	protein_coding	protein_coding	0	141	2	6.2672	6.5134050000000006	6.75961	0.00644151	1.00121e-4	0.0530091	0.00274217
chr18	76424460	76424559	7179364	0	-	0.525253	(0.523,0.58]	chr18	730080	438	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	141	2	6.2672	6.5134050000000006	6.75961	0.00644151	1.00121e-4	0.0530091	0.00274217
chr19	16131711	16131811	7216456	0	+	0.48	(0.45,0.485]	chr19	737378	1	SS3_PROX	SS3_PROX:INTRON	RAB8A	ENSG00000167461.12	ENST00000300935.8:ENST00000586682.1:ENST00000592971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	151	2	6.0799	6.513345	6.94679	0.00214762	8.68466e-4	0.0291055	0.0128564
chr3	128494519	128494617	1563241	0	+	0.5	(0.485,0.523]	chr3	165331	41	INTRON	INTRON	GATA2-AS1	ENSG00000244300.3	ENST00000464242.1:ENST00000468377.1:ENST00000669945.1	lncRNA	lncRNA	lncRNA	lncRNA	0	172	2	5.47425	6.513305	7.55236	0.0243396	9.10085e-6	0.106588	4.79891e-4
chr20	36314902	36315002	7469136	0	+	0.46	(0.45,0.485]	chr20	777805	80	INTRON	INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10	protein_coding	protein_coding	protein_coding	protein_coding	0	148	2	5.98601	6.512845	7.03968	0.0119228	5.71642e-5	0.0741726	0.00180869
chr17	642797	642896	6823604	0	-	0.424242	(0.419,0.45]	chr17	689804	96	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000680944.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000681830.1:ENST00000679959.1:ENST00000680114.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000570650.2:ENST00000679680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	148	2	6.09518	6.512700000000001	6.93022	0.0138177	1.38812e-4	0.0803169	0.00347953
chr9	137722860	137722960	4265519	0	+	0.66	(0.58,1]	chr9	407352	52	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000460486.3:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	144	2	5.89541	6.512155	7.1289	0.0066708	1.22303e-5	0.0540577	5.9245e-4
chr7	75113830	75113929	3394984	0	+	0.414141	(0.39,0.419]	chr7	327805	9	INTRON	INTRON	GTF2IRD2B	ENSG00000174428.19	ENST00000651028.1:ENST00000620662.1:ENST00000472837.7:ENST00000619142.4:ENST00000418185.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	145	2	6.19949	6.511865	6.82424	0.0103045	1.6132e-4	0.0684871	0.00387712
chr6	170334525	170334625	3075919	0	+	0.54	(0.523,0.58]	chr6	299162	33	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	0	143	2	6.312	6.51158	6.71116	0.00284169	3.69994e-4	0.033773	0.00704866
chr9	37222420	37222520	4149318	0	+	0.27	[0,0.29]	chr9	394662	355	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	154	2	5.72933	6.51158	7.29383	0.00996568	1.43276e-5	0.0673647	6.59975e-4
chr6	13590403	13590498	2855851	0	+	0.336842	(0.33,0.36]	chr6	279046	10	INTRON	INTRON	SIRT5	ENSG00000124523.17	ENST00000680432.1:ENST00000681012.1:ENST00000397350.7:ENST00000680442.1:ENST00000680754.1:ENST00000679658.1:ENST00000681243.1:ENST00000680747.1:ENST00000681818.1:ENST00000680402.1:ENST00000679663.1:ENST00000379250.10:ENST00000680852.1:ENST00000679922.1:ENST00000681231.1:ENST00000359782.8:ENST00000606117.2:ENST00000379262.8:ENST00000681905.1:ENST00000680937.1:ENST00000680151.1:ENST00000680707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	143	2	6.25665	6.511189999999999	6.76573	0.00779158	1.5822e-4	0.0590197	0.00384084
chr22	46290771	46290864	7743258	0	+	0.655914	(0.58,1]	chr22	811892	5	INTRON	INTRON	TTC38	ENSG00000075234.17	ENST00000381031.8:ENST00000451998.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	142	2	6.15376	6.51085	6.86794	8.82366e-4	2.90409e-4	0.0176886	0.0059241
chr2	239079895	239079995	1389469	0	-	0.5	(0.485,0.523]	chr2	148587	106	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000494800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	309	2	5.72776	6.50986	7.29196	9.09246e-4	1.39296e-5	0.0180048	6.47499e-4
chr6	144332217	144332316	3020331	0	+	0.454545	(0.45,0.485]	chr6	295143	8	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1:ENST00000628146.2	protein_coding	protein_coding	protein_coding	protein_coding	0	142	2	6.43773	6.50964	6.58155	0.00421879	3.27319e-4	0.0421633	0.00645438
chr7	158910949	158911049	3523095	0	+	0.67	(0.58,1]	chr7	340275	45	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	177	2	5.50497	6.509539999999999	7.51411	0.00187297	2.03828e-4	0.0219434	0.0080616
chr14	105215870	105215968	6058156	0	-	0.55102	(0.523,0.58]	chr14	594783	26	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000392557.8:ENST00000446501.6:ENST00000635152.1:ENST00000547374.5:ENST00000551787.5:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	304	2	5.41856	6.509505000000001	7.60045	4.93015e-4	3.56833e-5	0.0128889	0.0012808
chr19	9669745	9669845	7328083	0	-	0.51	(0.485,0.523]	chr19	757385	85	INTRON	INTRON	ZNF562	ENSG00000171466.10	ENST00000453372.7:ENST00000293648.8:ENST00000590155.5:ENST00000585688.5:ENST00000587392.5:ENST00000588653.5:ENST00000589542.1:ENST00000585350.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	147	2	6.15007	6.5094650000000005	6.86886	0.00208565	6.0909e-4	0.0287557	0.0100377
chr10	132573642	132573741	4617197	0	+	0.545455	(0.523,0.58]	chr10	441139	351	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	140	2	6.33346	6.50892	6.68438	0.00571732	1.2535e-4	0.0498083	0.00324328
chr17	31287523	31287623	6716786	0	+	0.5	(0.485,0.523]	chr17	674604	218	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000456735.6:ENST00000493220.5:ENST00000687863.1:ENST00000696140.1:ENST00000696141.1:ENST00000581113.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	151	2	6.03396	6.508675	6.98339	0.00167095	8.35707e-4	0.0252949	0.012554
chr19	11164666	11164766	7331813	0	-	0.41	(0.39,0.419]	chr19	758369	5	UTR3	UTR3:EXON_MRNA	KANK2	ENSG00000197256.11	ENST00000586659.6:ENST00000588787.5	protein_coding	protein_coding	protein_coding	protein_coding	0	145	2	6.17597	6.508565000000001	6.84116	0.0107103	1.53866e-4	0.0701493	0.00374891
chr19	49981824	49981909	7397883	0	-	0.517647	(0.485,0.523]	chr19	769490	3	UTR3	UTR3:EXON_MRNA:INTRON	VRK3	ENSG00000105053.11	ENST00000316763.8:ENST00000377011.6:ENST00000599538.5:ENST00000596814.5:ENST00000601341.5:ENST00000594948.5:ENST00000601912.5:ENST00000594092.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	155	2	5.94031	6.508475000000001	7.07664	0.00139256	0.00107389	0.022808	0.0148869
chr4	1176276	1176375	2179439	0	-	0.59596	(0.58,1]	chr4	220858	32	INTRON	INTRON	SPON2	ENSG00000159674.12	ENST00000617421.4:ENST00000515004.5:ENST00000502483.5:ENST00000509233.5:ENST00000511679.5:ENST00000511672.5:ENST00000506266.1:ENST00000504871.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	147	2	5.8019	6.508395	7.21489	0.007984	9.09859e-6	0.0596361	4.79891e-4
chr16	16018619	16018719	6406693	0	+	0.5	(0.485,0.523]	chr16	633029	16	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	140	2	6.35532	6.50833	6.66134	0.00545609	1.41724e-4	0.0486984	0.00352935
chr7	5364515	5364614	3535702	0	-	0.616162	(0.58,1]	chr7	341443	13	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6	protein_coding	protein_coding	protein_coding	protein_coding	0	136	2	6.41826	6.508195000000001	6.59813	0.00158605	1.27804e-4	0.0245893	0.00328053
chr2	3503287	3503387	1081958	0	-	0.47	(0.45,0.485]	chr2	117683	19	INTRON	INTRON	ADI1	ENSG00000182551.14	ENST00000327435.11:ENST00000382093.5	protein_coding	protein_coding	protein_coding	protein_coding	0	155	2	5.78096	6.507820000000001	7.23468	0.0166968	3.17326e-5	0.0884836	0.00117335
chr16	85398632	85398732	6517057	0	+	0.45	(0.419,0.45]	chr16	646391	393	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	153	2	6.07595	6.50764	6.93933	0.00339529	0.00132452	0.0372808	0.0173138
chr6	2162631	2162731	3084508	0	-	0.42	(0.419,0.45]	chr6	299521	375	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5	protein_coding	protein_coding	protein_coding	protein_coding	1	396	2	4.96973	6.507555	8.04538	0.00228028	5.46022e-6	0.0301696	3.36398e-4
chr3	66499789	66499889	1817112	0	-	0.57	(0.523,0.58]	chr3	187448	2	SS5_PROX	SS5_PROX:INTRON	LRIG1	ENSG00000144749.14	ENST00000273261.8:ENST00000383703.3:ENST00000498287.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	140	2	6.49924	6.507490000000001	6.51574	0.00409625	2.16101e-4	0.0413652	0.00477041
chr8	140530144	140530244	4088547	0	-	0.48	(0.45,0.485]	chr8	388514	101	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	2	421	2	4.80435	6.507185	8.21002	1.77884e-4	7.0277e-5	0.00750495	0.0021114
chr13	24173289	24173388	5549145	0	+	0.383838	(0.36,0.39]	chr13	547673	104	INTRON	INTRON	SPATA13	ENSG00000182957.16	ENST00000424834.6:ENST00000382108.8:ENST00000466831.2:ENST00000382095.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	342	2	4.90005	6.50681	8.11357	3.06767e-4	2.68785e-4	0.00996904	0.00560624
chr10	18567260	18567360	4642401	0	-	0.37	(0.36,0.39]	chr10	443321	149	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	143	2	6.48035	6.506584999999999	6.53282	0.00573632	4.10333e-4	0.0499133	0.00761562
chr8	503588	503688	3931440	0	-	0.57	(0.523,0.58]	chr8	375980	86	INTRON	INTRON	TDRP	ENSG00000180190.13	ENST00000523656.5:ENST00000324079.11	protein_coding	protein_coding	protein_coding	protein_coding	0	140	2	6.28963	6.50606	6.72249	0.00618741	1.11891e-4	0.0519442	0.00298349
chr10	18566061	18566161	4642389	0	-	0.36	(0.33,0.36]	chr10	443321	137	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	143	2	6.37866	6.505605	6.63255	0.0040075	4.63001e-4	0.0410079	0.00825119
chr10	18570358	18570458	4642432	0	-	0.38	(0.36,0.39]	chr10	443321	180	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	145	2	6.32052	6.505595	6.69067	0.00435707	6.27541e-4	0.0427656	0.0102323
chr7	892718	892818	3307711	0	+	0.59	(0.58,1]	chr7	320473	3	SS5_PROX	SS5_PROX:INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000407192.5:ENST00000464468.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	136	2	6.39389	6.505224999999999	6.61656	0.00152464	1.38027e-4	0.0240691	0.00347229
chr2	19979739	19979829	1096235	0	-	0.366667	(0.36,0.39]	chr2	119517	5	INTRON	INTRON	WDR35	ENSG00000118965.16	ENST00000281405.9:ENST00000345530.8:ENST00000414212.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	143	2	6.29128	6.505075	6.71887	0.0086512	2.14172e-4	0.0623824	0.00475596
chr4	101317311	101317410	2292852	0	-	0.252525	[0,0.29]	chr4	230565	761	INTRON	INTRON	PPP3CA	ENSG00000138814.17	ENST00000512215.5:ENST00000394854.8:ENST00000323055.10:ENST00000394853.8:ENST00000507176.5:ENST00000529324.5:ENST00000525819.1	protein_coding	protein_coding	protein_coding	protein_coding	0	140	2	6.27733	6.504955	6.73258	0.00134158	3.30957e-4	0.0223927	0.00650092
chr22	23818091	23818187	7693897	0	+	0.541667	(0.523,0.58]	chr22	805264	13	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SMARCB1	ENSG00000099956.20	ENST00000407422.8:ENST00000344921.11:ENST00000644036.2:ENST00000647057.1:ENST00000263121.12:ENST00000646723.1:ENST00000646911.1:ENST00000644462.1:ENST00000644467.1:ENST00000642275.1:ENST00000477836.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	148	2	6.09678	6.504614999999999	6.91245	0.00193417	6.74499e-4	0.0275437	0.0108081
chr20	36314803	36314902	7469135	0	+	0.474747	(0.45,0.485]	chr20	777805	79	INTRON	INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10	protein_coding	protein_coding	protein_coding	protein_coding	0	143	2	6.14119	6.503355	6.86552	0.00917101	9.58344e-5	0.064285	0.00264329
chr2	73266804	73266898	1190596	0	-	0.56383	(0.523,0.58]	chr2	129025	1	SS3_PROX	SS3_PROX:INTRON	FBXO41	ENSG00000163013.12	ENST00000295133.9:ENST00000520530.3:ENST00000521871.5	protein_coding	protein_coding	protein_coding	protein_coding	0	142	2	6.312	6.5032250000000005	6.69445	0.00293287	3.69994e-4	0.0343709	0.00704866
chr1	29236717	29236817	78375	0	+	0.7	(0.58,1]	chr1	8912	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2	protein_coding	protein_coding	protein_coding	protein_coding	0	138	2	6.06599	6.502915	6.93984	0.00477081	2.32442e-5	0.0450109	9.36605e-4
chr11	7524102	7524202	4792031	0	+	0.49	(0.485,0.523]	chr11	459300	96	INTRON	INTRON	PPFIBP2	ENSG00000166387.14	ENST00000526873.5:ENST00000528947.5:ENST00000684123.1:ENST00000299492.9	protein_coding	protein_coding	protein_coding	protein_coding	0	163	2	5.76929	6.502295	7.2353	0.00167976	0.00101791	0.0203806	0.0191524
chr19	39157250	39157350	7259581	0	+	0.56	(0.523,0.58]	chr19	744160	4	SS5_PROX	SS5_PROX:INTRON	PAK4	ENSG00000130669.17	ENST00000602004.1:ENST00000599470.5:ENST00000360442.8:ENST00000321944.8:ENST00000593480.5:ENST00000358301.7:ENST00000593690.5:ENST00000599386.5:ENST00000599657.5	protein_coding	protein_coding	protein_coding	protein_coding	0	145	2	6.18129	6.502155	6.82302	0.00229691	5.34061e-4	0.0302623	0.0091384
chr19	36851068	36851162	7249342	0	+	0.553191	(0.523,0.58]	chr19	743113	1	SS5_PROX	SS5_PROX:INTRON	ZNF345	ENSG00000251247.12	ENST00000589046.1:ENST00000586933.5:ENST00000420450.6:ENST00000614069.4:ENST00000532141.5:ENST00000526123.5:ENST00000432005.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	140	2	6.24442	6.502015	6.75961	0.00670944	1.00121e-4	0.0541591	0.00274217
chr11	901947	902047	4970035	0	-	0.46	(0.45,0.485]	chr11	480934	4	SS5_PROX	SS5_PROX:INTRON	CHID1	ENSG00000177830.18	ENST00000323578.13:ENST00000449825.5:ENST00000454838.6:ENST00000429789.6:ENST00000528581.5:ENST00000436108.6:ENST00000526714.5:ENST00000524832.5:ENST00000531859.5:ENST00000534254.5:ENST00000528426.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	142	2	6.18942	6.50178	6.81414	0.00844217	1.11424e-4	0.0617623	0.00297888
chr16	1507916	1508016	6370024	0	+	0.63	(0.58,1]	chr16	628650	2	SS5_PROX	SS5_PROX:INTRON	TELO2	ENSG00000100726.15	ENST00000262319.11:ENST00000568240.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	135	2	6.44222	6.50139	6.56056	0.00171861	1.18459e-4	0.025659	0.00311099
chr19	39157847	39157946	7259587	0	+	0.535354	(0.523,0.58]	chr19	744161	6	INTRON	INTRON	PAK4	ENSG00000130669.17	ENST00000602004.1:ENST00000599470.5:ENST00000360442.8:ENST00000321944.8:ENST00000593480.5:ENST00000358301.7:ENST00000593690.5:ENST00000599386.5:ENST00000599657.5	protein_coding	protein_coding	protein_coding	protein_coding	1	304	2	5.31527	6.50137	7.68747	4.12746e-4	4.9441e-5	0.0116511	0.00163421
chr10	75884324	75884424	4525012	0	+	0.4	(0.39,0.419]	chr10	432292	4	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	145	2	6.12775	6.501085	6.87442	0.0115883	1.40171e-4	0.0731017	0.00350296
chr12	30734767	30734867	5403862	0	-	0.44	(0.419,0.45]	chr12	529294	4	SS5_PROX	SS5_PROX:INTRON	CAPRIN2	ENSG00000110888.19	ENST00000537553.5:ENST00000695402.1:ENST00000298892.9:ENST00000454014.6:ENST00000687797.1:ENST00000695326.1:ENST00000548676.5:ENST00000433722.6:ENST00000395805.6:ENST00000690126.1:ENST00000684863.1:ENST00000695370.1:ENST00000695369.1:ENST00000542550.6:ENST00000695327.1:ENST00000686317.1:ENST00000695371.1:ENST00000695328.1:ENST00000695400.1:ENST00000695329.1:ENST00000540436.6:ENST00000695398.1:ENST00000694880.1:ENST00000688163.1:ENST00000692932.1:ENST00000540584.2:ENST00000695330.1:ENST00000690233.1:ENST00000695372.1:ENST00000695373.1:ENST00000695374.1:ENST00000417045.5:ENST00000537108.5:ENST00000689016.1:ENST00000538387.1:ENST00000690097.1:ENST00000534897.5:ENST00000541765.5:ENST00000543380.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	324	2	5.54335	6.501025	7.4587	0.0013474	4.7262e-5	0.0224436	0.00158337
chrX	47220388	47220486	7877807	0	+	0.469388	(0.45,0.485]	chrX	825683	9	INTRON	INTRON	CDK16	ENSG00000102225.17	ENST00000517997.5:ENST00000517479.1:ENST00000457458.6:ENST00000522883.1:ENST00000520295.5:ENST00000357227.9:ENST00000519758.5:ENST00000520893.5:ENST00000517426.5:ENST00000522234.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	141	2	6.25887	6.500755	6.74264	0.00748565	1.37232e-4	0.0576451	0.00346319
chr4	177435875	177435975	2365538	0	-	0.5	(0.485,0.523]	chr4	236153	2	SS5_PROX	SS5_PROX:INTRON	AGA	ENSG00000038002.9	ENST00000264595.7:ENST00000502310.5:ENST00000506853.5:ENST00000510635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	303	2	5.5222	6.50074	7.47928	6.23933e-4	2.6886e-5	0.0146683	0.00104137
chr10	62046961	62047061	4492034	0	+	0.4	(0.39,0.419]	chr10	429677	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ARID5B	ENSG00000150347.17	ENST00000681100.1:ENST00000279873.12:ENST00000647323.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	145	2	6.2956	6.50071	6.70582	0.00435618	6.75278e-4	0.0427656	0.010811
chr1	43561715	43561814	107056	0	+	0.484848	(0.45,0.485]	chr1	13192	74	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	141	2	6.43773	6.500545000000001	6.56336	0.00436001	3.27319e-4	0.0427656	0.00645438
chr17	76435441	76435541	6976348	0	-	0.45	(0.419,0.45]	chr17	712141	295	INTRON	INTRON	UBE2O	ENSG00000175931.13	ENST00000319380.12:ENST00000586409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	144	2	6.40495	6.5004100000000005	6.59587	0.00611222	5.72149e-4	0.0517172	0.00960229
chr1	230107630	230107730	359823	0	+	0.39	(0.36,0.39]	chr1	40627	157	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	142	2	6.37636	6.5002949999999995	6.62423	0.00749622	2.77822e-4	0.0576451	0.00576679
chr10	102265814	102265914	4573423	0	+	0.49	(0.485,0.523]	chr10	436745	53	INTRON	INTRON	GBF1	ENSG00000107862.7	ENST00000676513.1:ENST00000676939.1:ENST00000677439.1:ENST00000677240.1:ENST00000677618.1:ENST00000679155.1:ENST00000679280.1:ENST00000678036.1:ENST00000678476.1:ENST00000678504.1:ENST00000677247.1:ENST00000677655.1:ENST00000678351.1:ENST00000679238.1:ENST00000677487.1:ENST00000677506.1:ENST00000678666.1:ENST00000676560.1:ENST00000673650.1:ENST00000674034.1:ENST00000369983.5:ENST00000679003.1:ENST00000678486.1:ENST00000676682.1:ENST00000676807.1:ENST00000676993.1:ENST00000678575.1:ENST00000677522.1:ENST00000678293.1:ENST00000679087.1:ENST00000677683.1:ENST00000676861.1:ENST00000677491.1:ENST00000677461.1:ENST00000677871.1:ENST00000677431.1:ENST00000678222.1:ENST00000678826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	140	2	6.42823	6.500185	6.57214	0.0036605	2.78987e-4	0.0389784	0.00577243
chr15	30928455	30928552	6072696	0	+	0.42268	(0.419,0.45]	chr15	596643	27	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	FAN1	ENSG00000198690.10	ENST00000667837.1:ENST00000656435.1:ENST00000654056.1:ENST00000657391.1:ENST00000670849.1:ENST00000655421.1:ENST00000664070.1:ENST00000664837.1:ENST00000670074.1:ENST00000565280.5:ENST00000656307.1:ENST00000362065.9:ENST00000661974.1:ENST00000562881.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	434	2	5.05989	6.500145	7.9404	5.54971e-4	5.00604e-5	0.0137234	0.00164756
chr1	145056958	145057058	576160	0	-	0.37	(0.36,0.39]	chr1	66068	614	INTRON	INTRON	SRGAP2B	ENSG00000196369.12	ENST00000612199.4:ENST00000641863.3:ENST00000619678.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	142	2	6.35556	6.499615	6.64367	0.0077647	2.6343e-4	0.0589564	0.00553857
chr6	506993	507093	3077210	0	-	0.52	(0.485,0.523]	chr6	299297	69	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	0	139	2	6.39724	6.49932	6.6014	0.00505512	1.68998e-4	0.0465263	0.0040111
chr14	104777149	104777243	6057660	0	-	0.531915	(0.523,0.58]	chr14	594698	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000557552.1:ENST00000683722.1:ENST00000555528.5:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000544168.5:ENST00000554848.5:ENST00000682269.1:ENST00000555380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	140	2	6.40865	6.499275	6.5899	0.00356891	2.80789e-4	0.0383188	0.00578259
chr7	98317656	98317756	3648374	0	-	0.58	(0.523,0.58]	chr7	351234	3	SS3_PROX	SS3_PROX:INTRON	BAIAP2L1	ENSG00000006453.14	ENST00000005260.9:ENST00000462558.5:ENST00000473569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	140	2	6.40865	6.499275	6.5899	0.00356891	2.80789e-4	0.0383188	0.00578259
chr16	85231565	85231665	6515384	0	+	0.53	(0.523,0.58]	chr16	646377	38	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	384	2	5.47379	6.498885	7.52398	5.16247e-4	9.2742e-6	0.0132022	4.87501e-4
chr9	5919493	5919588	4273350	0	-	0.4	(0.39,0.419]	chr9	408175	6	UTR3	UTR3:EXON_MRNA:INTRON	KIAA2026	ENSG00000183354.12	ENST00000436015.6:ENST00000399933.8:ENST00000381461.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	142	2	6.47475	6.4985599999999994	6.52237	0.00649594	3.69587e-4	0.0532359	0.00704866
chr6	13590881	13590976	2855856	0	+	0.368421	(0.36,0.39]	chr6	279046	15	INTRON	INTRON	SIRT5	ENSG00000124523.17	ENST00000680432.1:ENST00000681012.1:ENST00000397350.7:ENST00000680442.1:ENST00000680754.1:ENST00000679658.1:ENST00000681243.1:ENST00000680747.1:ENST00000681818.1:ENST00000680402.1:ENST00000679663.1:ENST00000379250.10:ENST00000680852.1:ENST00000679922.1:ENST00000681231.1:ENST00000359782.8:ENST00000606117.2:ENST00000379262.8:ENST00000681905.1:ENST00000680937.1:ENST00000680151.1:ENST00000680707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	142	2	6.49527	6.49854	6.50181	0.00611969	3.87323e-4	0.0517362	0.00729662
chr2	31907764	31907863	1115917	0	-	0.414141	(0.39,0.419]	chr2	122050	141	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000422936.5:ENST00000413686.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	322	2	5.20234	6.4985	7.79466	5.89341e-4	1.14034e-4	0.0142342	0.0030241
chr1	246233123	246233223	703116	0	-	0.43	(0.419,0.45]	chr1	82422	395	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	155	2	5.82136	6.498405	7.17545	0.0210659	6.97411e-5	0.0996078	0.00209831
chr6	44260739	44260839	3137773	0	-	0.47	(0.45,0.485]	chr6	306523	2	SS3_PROX	SS3_PROX:INTRON	NFKBIE	ENSG00000146232.17	ENST00000275015.9:ENST00000619360.6:ENST00000477930.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	141	2	6.41491	6.4982299999999995	6.58155	0.00421879	0.00034885200000000003	0.0421633	0.00674746
chr13	113050417	113050517	5656139	0	+	0.47	(0.45,0.485]	chr13	555180	32	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	142	2	6.34422	6.49815	6.65208	0.00371059	4.24458e-4	0.039096	0.00777807
chr1	210653820	210653920	332870	0	+	0.51	(0.485,0.523]	chr1	37390	298	INTRON	INTRON	HHAT	ENSG00000054392.13	ENST00000541565.5:ENST00000413764.6:ENST00000261458.8:ENST00000537898.5:ENST00000545154.5:ENST00000367010.5:ENST00000367009.2	protein_coding	protein_coding	protein_coding	protein_coding	0	160	2	5.623	6.497905	7.37281	0.0192139	1.60973e-5	0.095424900000000007	7.19583e-4
chr12	15780278	15780378	5380403	0	-	0.5	(0.485,0.523]	chr12	527514	3	SS5_PROX	SS5_PROX:INTRON	EPS8	ENSG00000151491.14	ENST00000281172.10:ENST00000543523.5:ENST00000543468.5:ENST00000644374.1:ENST00000646918.1:ENST00000645775.1:ENST00000642939.1:ENST00000646828.1:ENST00000647224.1:ENST00000642278.1:ENST00000646123.1:ENST00000647087.1:ENST00000536956.5:ENST00000535752.5:ENST00000536793.5:ENST00000543363.5:ENST00000544064.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	142	2	6.10004	6.49783	6.89562	0.00860355	7.04028e-5	0.0623467	0.00211367
chr6	144347699	144347799	3020487	0	+	0.5	(0.485,0.523]	chr6	295148	30	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1:ENST00000628146.2:ENST00000421035.2	protein_coding	protein_coding	protein_coding	protein_coding	1	369	2	5.22648	6.49704	7.7676	8.51948e-4	4.55136e-6	0.0173632	2.94841e-4
chr10	18563962	18564062	4642368	0	-	0.36	(0.33,0.36]	chr10	443321	116	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	142	2	6.37866	6.496840000000001	6.61502	0.00413645	4.63001e-4	0.0416015	0.00825119
chr1	43558925	43559024	107028	0	+	0.565657	(0.523,0.58]	chr1	13192	46	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	369	2	5.23104	6.49658	7.76212	8.50075e-4	4.29035e-6	0.0173574	2.82813e-4
chr16	66604031	66604118	6469315	0	+	0.574713	(0.523,0.58]	chr16	641973	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	CMTM3	ENSG00000140931.20	ENST00000563672.5:ENST00000424011.6:ENST00000562357.5	protein_coding	protein_coding	protein_coding	protein_coding	0	149	2	6.03756	6.49636	6.95516	0.00178078	7.92905e-4	0.0262315	0.0120621
chr4	678029	678129	1993630	0	+	0.66	(0.58,1]	chr4	203049	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MYL5	ENSG00000215375.7	ENST00000506838.5:ENST00000505477.5:ENST00000503300.5:ENST00000400159.7:ENST00000511290.5:ENST00000513662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	135	2	6.1942	6.496325000000001	6.79845	0.00368616	3.72743e-5	0.0389784	0.00131851
chr6	106246351	106246451	3219765	0	-	0.5	(0.485,0.523]	chr6	312361	284	INTRON	INTRON	ATG5	ENSG00000057663.16	ENST00000636437.1:ENST00000636335.1:ENST00000369070.5:ENST00000369076.8:ENST00000635758.2:ENST00000360666.6:ENST00000343245.7:ENST00000646025.1:ENST00000613993.1:ENST00000476518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	139	2	6.49563	6.496320000000001	6.49701	0.00420849	2.29841e-4	0.0421454	0.00498593
chr19	34383697	34383797	7243187	0	+	0.66	(0.58,1]	chr19	741718	17	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	178	2	5.45872	6.49618	7.53364	0.00211999	1.9478e-4	0.0239744	0.00785001
chr10	18572556	18572656	4642454	0	-	0.34	(0.33,0.36]	chr10	443321	202	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	141	2	6.27908	6.495095	6.71111	0.00749528	1.84664e-4	0.0576451	0.0042795
chr1	93169886	93169986	533104	0	-	0.52	(0.485,0.523]	chr1	62316	68	INTRON	INTRON	TMED5	ENSG00000117500.13	ENST00000370282.8:ENST00000370290.7:ENST00000479918.5:ENST00000370280.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	139	2	6.47351	6.49484	6.51617	0.00406194	2.44978e-4	0.0413652	0.00523316
chr2	231044095	231044194	1047565	0	+	0.414141	(0.39,0.419]	chr2	114051	23	INTRON	INTRON	C2orf72	ENSG00000204128.6	ENST00000373640.5:ENST00000477463.1:ENST00000463834.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	332	2	4.98652	6.4946649999999995	8.00281	3.95352e-4	2.11768e-4	0.0113656	0.00471441
chr19	33506658	33506757	7365920	0	-	0.535354	(0.523,0.58]	chr19	763467	53	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000651646.1:ENST00000590408.1:ENST00000593163.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	139	2	6.45466	6.49465	6.53464	0.00395533	2.45921e-4	0.0406092	0.00524396
chr19	49796588	49796686	7283448	0	+	0.571429	(0.523,0.58]	chr19	748939	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	AP2A1	ENSG00000196961.13	ENST00000354293.10:ENST00000600199.1:ENST00000359032.9:ENST00000597774.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	139	2	6.45466	6.49465	6.53464	0.00395533	2.45921e-4	0.0406092	0.00524396
chr8	80171110	80171200	4006101	0	-	0.677778	(0.58,1]	chr8	382870	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TPD52	ENSG00000076554.16	ENST00000518937.6:ENST00000379096.9:ENST00000519303.6:ENST00000521354.5:ENST00000518517.5:ENST00000521241.6:ENST00000523753.5:ENST00000519250.5:ENST00000520795.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	136	2	6.3182	6.49433	6.67046	0.00135763	1.74994e-4	0.0224546	0.00410754
chr1	246123598	246123698	702018	0	-	0.39	(0.36,0.39]	chr1	82410	273	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	148	2	6.14074	6.494325	6.84791	0.00329741	0.0010006	0.0368376	0.0142243
chr10	79165828	79165928	4533015	0	+	0.59	(0.58,1]	chr10	432438	33	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	137	2	6.26544	6.49393	6.72242	0.00121317	2.06156e-4	0.0210863	0.00461335
chr4	53271225	53271325	2237225	0	-	0.37	(0.36,0.39]	chr4	225494	1253	INTRON	INTRON	SCFD2	ENSG00000184178.17	ENST00000401642.8:ENST00000388940.8	protein_coding	protein_coding	protein_coding	protein_coding	0	147	2	6.00099	6.49336	6.98573	0.0139273	1.01347e-4	0.0805916	0.00276585
chr11	7577294	7577392	4792573	0	+	0.571429	(0.523,0.58]	chr11	459336	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PPFIBP2	ENSG00000166387.14	ENST00000684123.1:ENST00000299492.9:ENST00000527790.5:ENST00000524548.5:ENST00000529575.5:ENST00000533792.5:ENST00000532926.5:ENST00000684215.1:ENST00000650027.1:ENST00000525597.5:ENST00000529021.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	340	2	4.74483	6.493225	8.24162	2.83162e-4	1.30529e-4	0.00633355	0.00581439
chr17	37316353	37316453	6892398	0	-	0.35	(0.33,0.36]	chr17	699918	167	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	141	2	6.42466	6.492900000000001	6.56114	0.00455773	4.08653e-4	0.0438198	0.00759284
chr3	48424780	48424864	1766680	0	-	0.5	(0.485,0.523]	chr3	182277	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	142	2	6.25753	6.492825	6.72812	0.00272951	4.52177e-4	0.0331786	0.00816702
chr13	110541773	110541873	5750392	0	-	0.53	(0.523,0.58]	chr13	563637	172	INTRON	INTRON	RAB20	ENSG00000139832.5	ENST00000267328.5	protein_coding	protein_coding	protein_coding	protein_coding	0	139	2	6.24442	6.492795	6.74117	0.00670944	1.05811e-4	0.0541591	0.00286061
chr7	103924879	103924979	3663047	0	-	0.47	(0.45,0.485]	chr7	353511	73	INTRON	INTRON	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1:ENST00000681401.1:ENST00000679689.1:ENST00000681182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	460	2	5.73397	6.491695	7.24942	0.0012056600000000001	3.69007e-6	0.0210584	2.563e-4
chr12	76068659	76068742	5455903	0	-	0.457831	(0.45,0.485]	chr12	536730	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	830	2	5.83651	6.491664999999999	7.14682	2.87862e-4	1.66215e-7	0.00964028	3.23092e-5
chr16	89303519	89303618	6659844	0	-	0.646465	(0.58,1]	chr16	666658	15	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	756	2	4.35397	6.4911650000000005	8.62836	1.41347e-5	1.2005e-5	0.00218388	5.85397e-4
chr1	31906711	31906808	437225	0	-	0.525773	(0.523,0.58]	chr1	52047	4	UTR3	UTR3:EXON_MRNA	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000602725.5	protein_coding	protein_coding	protein_coding	protein_coding	5	1483	2	5.64376	6.490880000000001	7.338	9.54602e-6	1.00045e-6	0.00184506	1.05211e-4
chr11	70686006	70686105	5061139	0	-	0.575758	(0.523,0.58]	chr11	492688	160	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	141	2	6.28679	6.49062	6.69445	0.00293287	3.97355e-4	0.0343709	0.00741985
chr7	55553810	55553887	3592452	0	-	0.558442	(0.523,0.58]	chr7	346474	1	UTR5	UTR5:EXON_MRNA:INTRON	VOPP1	ENSG00000154978.13	ENST00000462326.5:ENST00000285279.10:ENST00000428648.5:ENST00000454227.5:ENST00000427700.1:ENST00000452832.5:ENST00000453112.5:ENST00000471168.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	141	2	6.28679	6.49062	6.69445	0.00293287	3.97355e-4	0.0343709	0.00741985
chr20	23634753	23634853	7537530	0	-	0.48	(0.45,0.485]	chr20	786641	1	SS5_PROX	SS5_PROX:INTRON	CST3	ENSG00000101439.9	ENST00000398411.5:ENST00000398409.1:ENST00000376925.8	protein_coding	protein_coding	protein_coding	protein_coding	3	1116	2	5.5111	6.49058	7.47006	2.22084e-4	5.63117e-8	0.00843201	1.59286e-5
chr3	42647256	42647355	1452464	0	+	0.343434	(0.33,0.36]	chr3	155084	14	UTR3	UTR3:EXON_MRNA	NKTR	ENSG00000114857.19	ENST00000429888.5:ENST00000232978.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	1150	2	6.03803	6.49056	6.94309	3.05584e-5	1.75977e-6	0.00310406	1.52658e-4
chr20	8493538	8493638	7430203	0	+	0.37	(0.36,0.39]	chr20	773698	1215	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	141	2	6.37636	6.49045	6.60454	0.00749622	2.93176e-4	0.0576451	0.00597401
chr1	93753587	93753681	536017	0	-	0.531915	(0.523,0.58]	chr1	62528	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	BCAR3	ENSG00000137936.18	ENST00000370244.5:ENST00000469315.1:ENST00000433544.1:ENST00000649852.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	152	2	5.94389	6.490435	7.03698	0.00151874	0.0010207	0.0240441	0.0143498
chr15	74416376	74416474	6319063	0	-	0.55102	(0.523,0.58]	chr15	623108	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SEMA7A	ENSG00000138623.10	ENST00000261918.9:ENST00000542748.6:ENST00000543145.6	protein_coding	protein_coding	protein_coding	protein_coding	0	140	2	6.14951	6.49031	6.83111	0.00793972	8.07247e-5	0.0596361	0.00233145
chr12	132565591	132565690	5353274	0	+	0.535354	(0.523,0.58]	chr12	523680	50	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1:ENST00000539264.5:ENST00000543360.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	138	2	6.35489	6.490080000000001	6.62527	0.00549977	1.49357e-4	0.0489559	0.00367368
chr7	76997920	76998020	3398779	0	+	0.58	(0.523,0.58]	chr7	328286	72	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	146	2	6.09678	6.490015	6.88325	0.00204616	6.74499e-4	0.0283511	0.0108081
chr21	33530365	33530463	7652594	0	-	0.387755	(0.36,0.39]	chr21	800670	2	SS5_PROX	SS5_PROX:INTRON	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000361093.9:ENST00000366093.6:ENST00000466882.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	158	2	5.70457	6.48956	7.27455	0.022152	4.41219e-5	0.101784	0.00150124
chr3	146116227	146116327	1936546	0	-	0.47	(0.45,0.485]	chr3	197016	54	INTRON	INTRON	PLOD2	ENSG00000152952.12	ENST00000282903.10:ENST00000360060.7:ENST00000494950.5:ENST00000469350.5:ENST00000480704.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	186	2	5.43172	6.489105	7.54649	0.00440365	6.74992e-4	0.0393688	0.0153083
chr11	110230605	110230702	5123790	0	-	0.43299	(0.419,0.45]	chr11	497283	13	UTR3	UTR3:EXON_MRNA:INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000645312.1:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000527537.5:ENST00000532461.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	1249	2	6.0683	6.489084999999999	6.90987	1.22617e-4	7.53185e-7	0.00615337	8.71746e-5
chr8	127850038	127850138	3918343	0	+	0.5	(0.485,0.523]	chr8	374180	34	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000655594.1	lncRNA	lncRNA	lncRNA	lncRNA	2	844	2	5.58096	6.488885	7.39681	4.10009e-4	5.20507e-8	0.0116246	1.54848e-5
chr7	47475307	47475407	3588561	0	-	0.59	(0.58,1]	chr7	346123	222	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	278	2	5.47327	6.48876	7.50425	2.08552e-4	1.50711e-5	0.00813372	6.87246e-4
chr3	188825231	188825330	1658534	0	+	0.494949	(0.485,0.523]	chr3	173846	646	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000459897.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	138	2	6.35532	6.4884900000000005	6.62166	0.00545609	1.59261e-4	0.0486984	0.00385073
chr13	29552162	29552262	5677538	0	-	0.47	(0.45,0.485]	chr13	557653	156	INTRON	INTRON	SLC7A1	ENSG00000139514.13	ENST00000380752.10:ENST00000450494.1	protein_coding	protein_coding	protein_coding	protein_coding	2	413	2	5.21582	6.488485	7.76115	4.40743e-4	1.9455e-5	0.0120637	8.25524e-4
chr7	102047341	102047441	3436288	0	+	0.45	(0.419,0.45]	chr7	332534	188	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	144	2	6.14421	6.48843	6.83265	0.0127879	1.81728e-4	0.0769397	0.00422429
chr7	158917067	158917164	3523160	0	+	0.402062	(0.39,0.419]	chr7	340293	24	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	144	2	6.27083	6.488325	6.70582	0.00435618	7.20415e-4	0.0427656	0.0112959
chr16	75363931	75364031	6645526	0	-	0.43	(0.419,0.45]	chr16	664519	10	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4	protein_coding	protein_coding	protein_coding	protein_coding	1	403	2	5.31062	6.488110000000001	7.6656	0.00121956	1.6898e-5	0.0211644	7.44477e-4
chr7	47497618	47497718	3588788	0	-	0.45	(0.419,0.45]	chr7	346132	161	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	144	2	6.31147	6.48809	6.66471	0.00544202	7.29222e-4	0.0486855	0.0113963
chr12	132780197	132780297	5540253	0	-	0.63	(0.58,1]	chr12	546769	20	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	338	2	5.40481	6.48773	7.57065	2.79371e-4	2.61676e-6	0.00949286	1.99489e-4
chr1	229338506	229338606	680405	0	-	0.48	(0.45,0.485]	chr1	80009	106	INTRON	INTRON	CCSAP	ENSG00000154429.11	ENST00000366687.5:ENST00000284617.7:ENST00000366686.1:ENST00000483092.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	144	2	6.1915	6.487539999999999	6.78358	0.00291315	6.44145e-4	0.0342042	0.0104271
chr21	35442469	35442569	7661384	0	-	0.41	(0.39,0.419]	chr21	801090	30	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000475045.6:ENST00000467692.5:ENST00000494829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	149	2	6.08441	6.48748	6.89055	0.00314209	0.00116356	0.0358106	0.0157899
chr16	89431155	89431255	6661145	0	-	0.46	(0.45,0.485]	chr16	666749	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	140	2	6.21295	6.4869	6.76085	0.00810629	1.3016e-4	0.0602166	0.00332369
chr6	100687034	100687133	3211815	0	-	0.393939	(0.39,0.419]	chr6	311948	69	INTRON	INTRON	ASCC3	ENSG00000112249.14	ENST00000369162.7:ENST00000324696.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	141	2	6.47978	6.48684	6.4939	0.00628691	4.14458e-4	0.0523832	0.00767522
chr5	302379	302478	2377946	0	+	0.585859	(0.58,1]	chr5	237467	256	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	134	2	6.39389	6.48668	6.57947	0.00165065	1.38027e-4	0.0250898	0.00347229
chr6	601220	601320	3078172	0	-	0.53	(0.523,0.58]	chr6	299385	16	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	0	140	2	6.12478	6.4866150000000005	6.84845	0.00829271	7.65992e-5	0.0610772	0.00224403
chr16	85400131	85400231	6517072	0	+	0.52	(0.485,0.523]	chr16	646391	408	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	149	2	6.00341	6.486485	6.96956	0.00171649	9.07333e-4	0.025659	0.0132726
chr1	113131762	113131862	211186	0	+	0.42	(0.419,0.45]	chr1	23349	78	UTR3	UTR3:EXON_MRNA	LRIG2	ENSG00000198799.12	ENST00000361127.6	protein_coding	protein_coding	protein_coding	protein_coding	1	320	2	5.49353	6.485745	7.47796	0.0013011	5.46612e-5	0.0220198	0.00175188
chr2	239348880	239348980	1392199	0	-	0.5	(0.485,0.523]	chr2	148752	244	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	143	2	6.1777	6.485035	6.79237	0.00241519	5.64449e-4	0.0309229	0.00950156
chr9	128372213	128372313	4245023	0	+	0.46	(0.45,0.485]	chr9	403208	4	INTRON	INTRON	URM1	ENSG00000167118.11	ENST00000372850.5:ENST00000470840.5:ENST00000372847.1:ENST00000372853.9:ENST00000483206.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	143	2	6.2181	6.484954999999999	6.75181	0.00308946	5.99406e-4	0.0354967	0.00993857
chr17	72927742	72927842	6967566	0	-	0.34	(0.33,0.36]	chr17	710518	776	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	149	2	5.87022	6.484735	7.09925	0.0148989	6.04067e-5	0.0834354	0.00187976
chr21	35442369	35442469	7661383	0	-	0.52	(0.485,0.523]	chr21	801090	29	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000475045.6:ENST00000467692.5:ENST00000494829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	158	2	5.80515	6.484695	7.16424	0.00153111	0.0011719	0.0206836	0.0191213
chr11	711185	711285	4785350	0	+	0.5	(0.485,0.523]	chr11	458134	3	INTRON	INTRON	EPS8L2	ENSG00000177106.17	ENST00000524763.5:ENST00000533256.5:ENST00000614442.4:ENST00000534755.5:ENST00000529346.5:ENST00000650127.1:ENST00000526909.5:ENST00000318562.13:ENST00000533500.5:ENST00000527807.5:ENST00000531348.5:ENST00000530636.5:ENST00000526198.5:ENST00000530118.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	150	2	5.97221	6.484645	6.99708	0.00162697	9.86421e-4	0.0249683	0.0140716
chr1	151417696	151417796	589250	0	-	0.33	(0.29,0.33]	chr1	68427	49	INTRON	INTRON	POGZ	ENSG00000143442.22	ENST00000271715.7:ENST00000358476.7:ENST00000392723.5:ENST00000368863.6:ENST00000409503.5:ENST00000531094.5:ENST00000491586.5:ENST00000529669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	156	2	5.83477	6.48452	7.13427	0.00150459	0.00107154	0.0197123	0.0188758
chr15	63134738	63134837	6127811	0	+	0.474747	(0.45,0.485]	chr15	602826	34	INTRON	INTRON	LACTB	ENSG00000103642.12	ENST00000261893.9:ENST00000559782.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	146	2	6.10862	6.4843399999999995	6.86006	0.00252685	8.0459e-4	0.031696	0.012189
chr2	101134240	101134340	1239926	0	-	0.42	(0.419,0.45]	chr2	133786	244	INTRON	INTRON	TBC1D8	ENSG00000204634.13	ENST00000409318.2:ENST00000376840.8:ENST00000463469.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	145	2	6.23716	6.483785	6.73041	0.00486702	8.82327e-4	0.0456282	0.0129974
chr5	32299068	32299168	2631403	0	-	0.4	(0.39,0.419]	chr5	261138	22	INTRON	INTRON	MTMR12	ENSG00000150712.11	ENST00000280285.9:ENST00000382142.8:ENST00000264934.5:ENST00000505419.5:ENST00000513622.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	141	2	6.43589	6.48367	6.53145	0.00589503	4.66094e-4	0.0506158	0.00828434
chr8	80127774	80127874	4005666	0	-	0.33	(0.29,0.33]	chr8	382863	75	INTRON	INTRON	TPD52	ENSG00000076554.16	ENST00000518937.6:ENST00000379096.9:ENST00000519303.6:ENST00000521354.5:ENST00000518517.5:ENST00000521241.6:ENST00000523753.5:ENST00000519250.5:ENST00000520795.5:ENST00000521561.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	142	2	6.1994	6.483454999999999	6.76751	0.0022185	5.69534e-4	0.029607	0.00958234
chr14	23094044	23094130	5939173	0	-	0.430233	(0.419,0.45]	chr14	582244	1	INTRON	INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000262710.5:ENST00000457657.5:ENST00000555053.5	protein_coding	protein_coding	protein_coding	protein_coding	3	523	2	4.46413	6.483264999999999	8.5024	1.91922e-4	1.44733e-4	0.00780212	0.00359413
chr7	158915016	158915113	3523139	0	+	0.42268	(0.419,0.45]	chr7	340293	3	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	143	2	6.33542	6.48306	6.6307	0.00576404	6.85495e-4	0.0500197	0.0108846
chr19	33506460	33506559	7365918	0	-	0.535354	(0.523,0.58]	chr19	763467	51	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000651646.1:ENST00000590408.1:ENST00000593163.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	140	2	6.09961	6.482595	6.86558	0.00866655	7.2723e-5	0.0623824	0.00216169
chr1	11812660	11812760	28590	0	+	0.43	(0.419,0.45]	chr1	3422	51	INTRON	INTRON	CLCN6	ENSG00000011021.23	ENST00000312413.10:ENST00000346436.11:ENST00000376497.7:ENST00000400892.3:ENST00000376496.4:ENST00000376492.3:ENST00000376490.7:ENST00000376491.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	142	2	6.40495	6.482565	6.56018	0.00648928	5.72149e-4	0.0532359	0.00960229
chr12	132535556	132535655	5352971	0	+	0.59596	(0.58,1]	chr12	523670	72	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	280	2	5.30159	6.482475	7.66336	1.43838e-4	2.72732e-5	0.00669515	0.0010508
chr1	245814715	245814815	698919	0	-	0.46	(0.45,0.485]	chr1	82357	3	SS3_PROX	SS3_PROX:INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000493441.5:ENST00000488153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	150	2	5.99015	6.482365	6.97458	0.00203802	0.00110015	0.0283511	0.015136
chr17	66188277	66188376	6956458	0	-	0.484848	(0.45,0.485]	chr17	709449	46	INTRON	INTRON	CEP112	ENSG00000154240.17	ENST00000535342.7:ENST00000392769.6:ENST00000537949.5:ENST00000583358.1:ENST00000580624.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	166	2	5.68155	6.48235	7.28315	0.00241241	0.00112952	0.0261086	0.0202727
chr20	44405657	44405757	7482972	0	+	0.59	(0.58,1]	chr20	779646	2	SS3_PROX	SS3_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	277	2	5.61695	6.48229	7.34763	2.99474e-4	9.1144e-6	0.00982269	4.80303e-4
chr8	143322549	143322644	4095553	0	-	0.610526	(0.58,1]	chr8	389125	8	INTRON	INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	135	2	6.09256	6.481719999999999	6.87088	0.00452436	2.92911e-5	0.0436138	0.00110673
chr21	33577535	33577631	7652921	0	-	0.354167	(0.33,0.36]	chr21	800732	1	UTR3	UTR3:EXON_MRNA:INTRON	DONSON	ENSG00000159147.18	ENST00000439593.1:ENST00000303113.10:ENST00000453626.5:ENST00000303071.10:ENST00000457359.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	337	2	6.03191	6.48119	6.93047	0.00231783	7.95151e-6	0.0303421	4.36503e-4
chr7	139703844	139703943	3723184	0	-	0.494949	(0.485,0.523]	chr7	357498	718	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	1	301	2	5.28241	6.480919999999999	7.67943	4.15047e-4	5.71751e-5	0.0117016	0.00180869
chr1	61118627	61118727	146466	0	+	0.49	(0.485,0.523]	chr1	17144	64	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	1261	2	6.05092	6.480895	6.91087	2.39446e-5	4.4778e-7	0.00282051	6.18848e-5
chr11	34987622	34987722	4840600	0	+	0.31	(0.29,0.33]	chr11	463100	25	INTRON	INTRON	PDHX	ENSG00000110435.13	ENST00000448838.8:ENST00000227868.9:ENST00000430469.6:ENST00000526309.1:ENST00000477173.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	141	2	6.226	6.4805150000000005	6.73503	0.00236326	5.29368e-4	0.0306624	0.0090868
chr13	75480869	75480969	5727993	0	-	0.66	(0.58,1]	chr13	561723	2	SS5_PROX	SS5_PROX:INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	3	920	2	6.19077	6.480465	6.77016	1.02227e-5	2.02176e-7	0.00188292	3.6561e-5
chr1	43565302	43565402	107092	0	+	0.6	(0.58,1]	chr1	13192	110	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	136	2	6.23832	6.48037	6.72242	0.00121317	2.24165e-4	0.0210863	0.00490779
chr10	132574141	132574241	4617202	0	+	0.55	(0.523,0.58]	chr10	441139	356	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	137	2	6.376	6.480235	6.58447	0.00529293	1.68436e-4	0.047841	0.00400681
chr19	33422234	33422334	7365060	0	-	0.54	(0.523,0.58]	chr19	763415	82	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000590731.6:ENST00000609145.5:ENST00000588719.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	137	2	6.376	6.480235	6.58447	0.00529293	1.68436e-4	0.047841	0.00400681
chr3	120669426	120669526	1887819	0	-	0.46	(0.45,0.485]	chr3	191540	164	INTRON	INTRON	HGD	ENSG00000113924.12	ENST00000283871.10:ENST00000476082.2:ENST00000485313.5:ENST00000488183.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	319	2	4.99153	6.4801850000000005	7.96884	2.9036e-4	1.6063e-4	0.00968387	0.00387435
chr7	38216448	38216544	3350255	0	+	0.427083	(0.419,0.45]	chr7	323999	15	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	STARD3NL	ENSG00000010270.14	ENST00000009041.12:ENST00000434197.5:ENST00000471550.1:ENST00000396013.5:ENST00000440144.5:ENST00000453225.5:ENST00000429075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	142	2	6.38214	6.480135	6.57813	0.00629696	6.07209e-4	0.0523832	0.0100293
chr13	112693444	112693543	5652574	0	+	0.616162	(0.58,1]	chr13	554894	26	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5	protein_coding	protein_coding	protein_coding	protein_coding	2	686	2	6.27037	6.48009	6.68981	3.50129e-5	1.84035e-7	0.00328321	3.45726e-5
chr19	735610	735687	7184608	0	+	0.688312	(0.58,1]	chr19	730572	1	SS3_PROX	SS3_PROX:INTRON	PALM	ENSG00000099864.18	ENST00000338448.10:ENST00000264560.11:ENST00000589012.5:ENST00000593172.5:ENST00000633534.1:ENST00000592155.5:ENST00000590161.2:ENST00000587513.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	324	2	4.69024	6.479835	8.26943	2.07711e-4	3.38885e-5	0.00464072	0.00324013
chr17	80727964	80728064	6810738	0	+	0.41	(0.39,0.419]	chr17	687833	185	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000572733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	141	2	6.22263	6.47957	6.73651	0.00991891	2.05874e-4	0.0671959	0.00461335
chr4	151122307	151122407	2350475	0	-	0.33	(0.29,0.33]	chr4	234980	1	SS3_PROX	SS3_PROX:INTRON	SH3D19	ENSG00000109686.19	ENST00000409598.8:ENST00000604030.7:ENST00000304527.8:ENST00000409252.6:ENST00000514152.5:ENST00000478503.6:ENST00000652233.1:ENST00000427414.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	137	2	6.38333	6.47939	6.57545	0.00461717	1.9739e-4	0.0442497	0.0044853
chr6	140785733	140785833	3279588	0	-	0.3	(0.29,0.33]	chr6	317145	1219	INTRON	INTRON	ENSG00000234147	ENSG00000234147.3	ENST00000650553.2	lncRNA	lncRNA	lncRNA	lncRNA	0	137	2	6.38333	6.47939	6.57545	0.00461717	1.9739e-4	0.0442497	0.0044853
chr17	77485226	77485325	6805234	0	+	0.50505	(0.485,0.523]	chr17	686821	12	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	303	2	5.20424	6.479085	7.75393	3.56163e-4	7.28824e-5	0.0107631	0.00216451
chr16	81667670	81667768	6509983	0	+	0.55102	(0.523,0.58]	chr16	645961	5	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	0	155	2	5.84373	6.479065	7.1144	0.00133116	0.00130498	0.0220198	0.0173248
chr2	55023389	55023488	1148261	0	-	0.333333	(0.33,0.36]	chr2	125466	90	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	0	139	2	6.46661	6.47881	6.49101	0.00539516	3.40831e-4	0.0483725	0.00667174
chr19	8240285	8240385	7200284	0	+	0.58	(0.523,0.58]	chr19	734187	4	SS3_PROX	SS3_PROX:INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559490.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	142	2	6.18129	6.478714999999999	6.77614	0.00251197	5.34061e-4	0.031696	0.0091384
chr19	36851162	36851254	7249343	0	+	0.543478	(0.523,0.58]	chr19	743114	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	ZNF345	ENSG00000251247.12	ENST00000589046.1:ENST00000586933.5:ENST00000420450.6:ENST00000614069.4:ENST00000532141.5:ENST00000526123.5:ENST00000432005.6:ENST00000529555.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	300	2	5.66535	6.47844	7.29153	9.18957e-4	1.62005e-5	0.0180726	7.23813e-4
chr2	138530881	138530981	904176	0	+	0.4	(0.39,0.419]	chr2	101929	284	INTRON	INTRON	SPOPL	ENSG00000144228.9	ENST00000280098.9:ENST00000430968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	140	2	6.33308	6.47837	6.62366	0.00825437	2.80749e-4	0.0609913	0.00578259
chr5	10380118	10380217	2382681	0	+	0.393939	(0.39,0.419]	chr5	238314	9	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000502795.5:ENST00000511802.5:ENST00000503788.5:ENST00000640713.1:ENST00000510872.5:ENST00000507863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	146	2	6.14017	6.478300000000001	6.81643	0.0035848	0.00100955	0.0384108	0.0142887
chr7	103491852	103491952	3658638	0	-	0.38	(0.36,0.39]	chr7	353181	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RELN	ENSG00000189056.15	ENST00000679371.1:ENST00000681364.1:ENST00000680248.1:ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000681921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	140	2	6.47612	6.478235	6.48035	0.00632423	4.10333e-4	0.0524897	0.00761562
chr7	47352630	47352730	3587317	0	-	0.62	(0.58,1]	chr7	346030	59	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	368	2	5.012	6.478149999999999	7.9443	7.40021e-5	1.48584e-5	0.00480491	6.80263e-4
chr15	99602609	99602708	6198707	0	+	0.565657	(0.523,0.58]	chr15	609964	1	INTRON	INTRON	MEF2A	ENSG00000068305.18	ENST00000560493.5:ENST00000354410.9:ENST00000558812.5:ENST00000558856.5:ENST00000685785.1:ENST00000559036.5:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000558049.5:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1:ENST00000559903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	317	2	4.93802	6.478065	8.01811	2.08452e-4	1.58605e-4	0.00813372	0.00384095
chr2	65369233	65369332	1171543	0	-	0.373737	(0.36,0.39]	chr2	127560	26	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000452315.5:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	1	387	2	5.24407	6.47804	7.71201	0.00117257	1.20737e-5	0.0206912	5.87067e-4
chr19	55240533	55240622	7407338	0	-	0.483146	(0.45,0.485]	chr19	771264	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPP6R1	ENSG00000105063.19	ENST00000412770.7:ENST00000587283.5:ENST00000591323.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	368	2	4.94404	6.477795	8.01155	0.00171889	2.78984e-6	0.025659	2.08969e-4
chrX	78122334	78122434	7912476	0	+	0.42	(0.419,0.45]	chrX	828894	1	SS3_PROX	SS3_PROX:INTRON	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000491291.1:ENST00000373316.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	1003	2	5.67773	6.477790000000001	7.27785	1.73921e-4	5.20883e-5	0.00739727	0.00169273
chr18	80176964	80177064	7183048	0	-	0.51	(0.485,0.523]	chr18	730359	160	INTRON	INTRON	PARD6G	ENSG00000178184.16	ENST00000353265.8	protein_coding	protein_coding	protein_coding	protein_coding	0	137	2	6.33389	6.477775	6.62166	0.00567224	1.59261e-4	0.0496143	0.00385073
chr4	78786406	78786505	2071525	0	+	0.50505	(0.485,0.523]	chr4	211658	93	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	137	2	6.33389	6.477775	6.62166	0.00567224	1.59261e-4	0.0496143	0.00385073
chr11	497770	497870	4968424	0	-	0.55	(0.523,0.58]	chr11	480491	4	SS5_PROX	SS5_PROX:INTRON	RNH1	ENSG00000023191.17	ENST00000534797.5:ENST00000397614.5:ENST00000397604.7:ENST00000354420.7:ENST00000397615.6:ENST00000525522.5:ENST00000525701.5:ENST00000529768.5:ENST00000533410.5:ENST00000438658.6:ENST00000356187.9:ENST00000524464.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	368	2	4.69548	6.47772	8.25996	0.00248377	8.27326e-7	0.0315244	9.26925e-5
chr19	33506261	33506361	7365916	0	-	0.52	(0.485,0.523]	chr19	763467	49	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000651646.1:ENST00000590408.1:ENST00000593163.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	137	2	6.43798	6.4777000000000005	6.51742	0.00469187	2.15808e-4	0.0447158	0.00477041
chr12	132534859	132534958	5352964	0	+	0.686869	(0.58,1]	chr12	523670	65	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	132	2	6.33437	6.4776050000000005	6.62084	0.00276493	6.67603e-5	0.0332418	0.00202861
chr12	23705418	23705518	5386070	0	-	0.42	(0.419,0.45]	chr12	528148	395	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000537393.5:ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000535530.5:ENST00000536629.5:ENST00000536911.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	141	2	6.28205	6.4773700000000005	6.67269	0.0102557	2.80959e-4	0.0684871	0.00578259
chr16	25138380	25138479	6426862	0	+	0.565657	(0.523,0.58]	chr16	635895	55	INTRON	INTRON	LCMT1	ENSG00000205629.12	ENST00000380962.9:ENST00000564011.5:ENST00000380966.8:ENST00000399069.8:ENST00000577157.1:ENST00000570981.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	137	2	6.28963	6.47729	6.66495	0.00618741	1.32802e-4	0.0519442	0.00337193
chr1	2230917	2231015	4519	0	+	0.642857	(0.58,1]	chr1	1044	8	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	1	328	2	5.16229	6.477125	7.79196	4.91317e-4	1.18598e-6	0.0128672	1.16684e-4
chr1	77709849	77709949	516085	0	-	0.36	(0.33,0.36]	chr1	60848	80	INTRON	INTRON	USP33	ENSG00000077254.14	ENST00000370794.7:ENST00000370793.5:ENST00000357428.5:ENST00000481579.5	protein_coding	protein_coding	protein_coding	protein_coding	0	146	2	6.09559	6.4767150000000004	6.85784	0.00265287	9.809e-4	0.0326475	0.0140347
chr11	70818363	70818463	5062467	0	-	0.55	(0.523,0.58]	chr11	492713	108	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	141	2	6.2084	6.47621	6.74402	0.00267018	4.95211e-4	0.0327654	0.00865935
chr17	72555329	72555429	6963864	0	-	0.48	(0.45,0.485]	chr17	710389	209	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	307	2	5.66927	6.47621	7.28315	0.00112952	2.02558e-5	0.0202727	8.47843e-4
chr14	103400922	103401021	5922241	0	+	0.353535	(0.33,0.36]	chr14	579321	15	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	139	2	6.44711	6.47614	6.50517	0.0050376	3.84375e-4	0.0464868	0.00726694
chr7	66702375	66702475	3382439	0	+	0.4	(0.39,0.419]	chr7	326362	168	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	140	2	6.458	6.47595	6.4939	0.00628691	4.39359e-4	0.0523832	0.00798319
chr20	43516177	43516274	7480677	0	+	0.43299	(0.419,0.45]	chr20	779290	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	L3MBTL1	ENSG00000185513.17	ENST00000649501.1:ENST00000439769.2:ENST00000649084.1:ENST00000418998.7:ENST00000427442.8:ENST00000649917.1:ENST00000647860.1:ENST00000649698.1:ENST00000422861.3:ENST00000473289.2:ENST00000648786.1:ENST00000648715.1:ENST00000648570.1:ENST00000650071.1:ENST00000650484.1:ENST00000648421.1:ENST00000373135.8:ENST00000373134.5:ENST00000430781.7:ENST00000457824.5:ENST00000473981.2:ENST00000647827.1:ENST00000445228.6:ENST00000648774.1:ENST00000497347.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	143	2	6.28712	6.4759150000000005	6.66471	0.00544202	7.76382e-4	0.0486855	0.0118807
chr16	85399332	85399432	6517064	0	+	0.49	(0.485,0.523]	chr16	646391	400	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	150	2	5.94031	6.47548	7.01065	0.00158449	0.00107389	0.0245893	0.0148869
chr10	132594524	132594624	4617406	0	+	0.57	(0.523,0.58]	chr10	441139	560	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	1	300	2	5.23829	6.47544	7.71259	3.92044e-4	6.29256e-5	0.0113511	0.0019359
chr11	74822004	74822104	4895358	0	+	0.56	(0.523,0.58]	chr11	472484	39	INTRON	INTRON	RNF169	ENSG00000166439.6	ENST00000299563.5	protein_coding	protein_coding	protein_coding	protein_coding	1	300	2	5.23829	6.47544	7.71259	3.92044e-4	6.29256e-5	0.0113511	0.0019359
chr9	124492629	124492729	4402650	0	-	0.63	(0.58,1]	chr9	419812	2	SS5_PROX	SS5_PROX:INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	1	327	2	5.0773	6.47542	7.87354	5.97447e-4	8.83447e-7	0.0143535	9.69154e-5
chr11	28122280	28122380	4823536	0	+	0.33	(0.29,0.33]	chr11	461830	1	SS5_PROX	SS5_PROX:INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000403099.5:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10:ENST00000634721.1:ENST00000634762.1:ENST00000437814.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	141	2	6.1994	6.4753799999999995	6.75136	0.00228939	5.69534e-4	0.0302542	0.00958234
chr9	132071850	132071950	4422747	0	-	0.48	(0.45,0.485]	chr9	422092	393	INTRON	INTRON	MED27	ENSG00000160563.14	ENST00000651950.1:ENST00000357028.6:ENST00000292035.10:ENST00000651555.1:ENST00000650776.1:ENST00000444872.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	139	2	6.18942	6.475135	6.76085	0.00844217	1.3016e-4	0.0617623	0.00332369
chr16	29272313	29272413	6433560	0	+	0.53	(0.523,0.58]	chr16	636745	202	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	146	2	6.03756	6.4750049999999995	6.91245	0.00193417	7.92905e-4	0.0275437	0.0120621
chr10	22536808	22536906	4645898	0	-	0.469388	(0.45,0.485]	chr10	443478	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000323883.11:ENST00000474335.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	593	2	5.07327	6.47469	7.87611	3.50026e-4	8.97791e-6	0.0106878	4.76249e-4
chr10	119317317	119317417	4594420	0	+	0.5	(0.485,0.523]	chr10	439167	1043	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	141	2	6.2048	6.474625	6.74445	0.00264613	5.23665e-4	0.032596	0.0090184
chr9	68847368	68847468	4162167	0	+	0.47	(0.45,0.485]	chr9	395613	228	INTRON	INTRON	PIP5K1B	ENSG00000107242.20	ENST00000265382.8:ENST00000541509.5:ENST00000377284.5:ENST00000437200.5:ENST00000478500.3:ENST00000440050.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	138	2	6.2813	6.47436	6.66742	0.00719875	1.70557e-4	0.056408	0.00403679
chr17	38875009	38875108	6729621	0	+	0.555556	(0.523,0.58]	chr17	676433	5	INTRON	INTRON	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000585841.5:ENST00000318008.11:ENST00000443937.7:ENST00000584106.1:ENST00000435347.7:ENST00000419929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	151	2	5.91127	6.474125	7.03698	0.00151874	0.00111349	0.0240441	0.0152496
chr21	37101343	37101442	7617711	0	+	0.424242	(0.419,0.45]	chr21	795750	1	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000411496.2:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	338	2	4.86896	6.47411	8.07926	4.27915e-4	3.22653e-4	0.0118656	0.00638336
chr17	80290337	80290403	6807474	0	+	0.575758	(0.523,0.58]	chr17	687387	1	SS3_PROX	SS3_PROX:INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000319921.4:ENST00000559070.5:ENST00000573548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	139	2	6.09961	6.47403	6.84845	0.00866655	7.65992e-5	0.0623824	0.00224403
chr11	70740585	70740685	5061687	0	-	0.54	(0.523,0.58]	chr11	492701	227	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	137	2	6.43184	6.47379	6.51574	0.00409625	2.62665e-4	0.0413652	0.00552802
chr2	11580303	11580403	720676	0	+	0.57	(0.523,0.58]	chr2	84133	2	SS3_PROX	SS3_PROX:INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000263834.9:ENST00000389825.7:ENST00000381483.6:ENST00000234142.9	protein_coding	protein_coding	protein_coding	protein_coding	1	298	2	5.62272	6.473605	7.32449	8.60444e-4	1.85868e-5	0.0174691	8.01637e-4
chr2	186127510	186127609	1338578	0	-	0.353535	(0.33,0.36]	chr2	142311	86	INTRON	INTRON	LINC01473	ENSG00000237877.7	ENST00000658984.1:ENST00000658990.1:ENST00000655126.1:ENST00000667839.1:ENST00000670612.1:ENST00000668985.1:ENST00000661574.1:ENST00000666677.1:ENST00000665629.1:ENST00000671116.1:ENST00000419719.2:ENST00000667056.1:ENST00000671599.1	lncRNA	lncRNA	lncRNA	lncRNA	2	439	2	4.47815	6.47359	8.46903	2.16715e-4	1.12004e-4	0.00590125	0.00477839
chr5	882785	882855	2608204	0	-	0.542857	(0.523,0.58]	chr5	259474	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	422	2	5.55866	6.473445	7.38823	7.573e-4	4.95781e-6	0.0162522	3.14324e-4
chr1	246232723	246232823	703112	0	-	0.43	(0.419,0.45]	chr1	82422	391	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	148	2	5.90909	6.47269	7.03629	0.0184411	1.03265e-4	0.0927235	0.00280222
chr19	36214029	36214121	7367435	0	-	0.51087	(0.485,0.523]	chr19	763876	8	INTRON	INTRON	ZNF565	ENSG00000196357.12	ENST00000304116.10:ENST00000355114.9:ENST00000392173.6:ENST00000591473.1:ENST00000587803.1:ENST00000586648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	137	2	6.24485	6.4724	6.69995	0.00665813	1.26446e-4	0.0540577	0.00325863
chr16	618560	618660	6368579	0	+	0.63	(0.58,1]	chr16	628043	3	SS5_PROX	SS5_PROX:INTRON	RAB40C	ENSG00000197562.10	ENST00000535977.5:ENST00000569575.5:ENST00000539661.5:ENST00000566290.5:ENST00000248139.8:ENST00000568586.5:ENST00000538492.5:ENST00000565511.5:ENST00000509637.6:ENST00000563109.1:ENST00000564703.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	134	2	6.29206	6.472385	6.65271	0.00141059	1.89825e-4	0.0229261	0.0043642
chr8	143322170	143322265	4095549	0	-	0.642105	(0.58,1]	chr8	389125	4	INTRON	INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	135	2	6.03893	6.4723500000000005	6.90577	0.00503456	2.60624e-5	0.0464858	0.00101533
chr2	10368577	10368677	719085	0	+	0.56	(0.523,0.58]	chr2	84032	138	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	138	2	6.33678	6.47232	6.60786	0.00345115	3.44853e-4	0.037649	0.00672121
chrX	2703536	2703636	7830401	0	+	0.39	(0.36,0.39]	chrX	822102	114	INTRON	INTRON	CD99	ENSG00000002586.20	ENST00000611428.5:ENST00000381187.8:ENST00000381184.6:ENST00000647297.1:ENST00000381192.10:ENST00000645950.1:ENST00000482405.7:ENST00000624481.4:ENST00000646103.1:ENST00000623253.4:ENST00000449611.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	143	2	6.22055	6.472035	6.72352	0.00411221	8.14665e-4	0.0414433	0.0123172
chr13	75391090	75391190	5727095	0	-	0.48	(0.45,0.485]	chr13	561722	139	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	1	371	2	4.74661	6.4717150000000006	8.19682	0.00251792	1.53676e-6	0.031696	1.3934e-4
chr18	74514219	74514313	7088605	0	+	0.43617	(0.419,0.45]	chr18	722320	1	INTRON	INTRON	CNDP2	ENSG00000133313.15	ENST00000579847.5:ENST00000324262.9:ENST00000324301.12:ENST00000584581.5:ENST00000579624.1:ENST00000583695.1:ENST00000581600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	140	2	6.38764	6.471445	6.55525	0.00863623	3.84925e-4	0.0623824	0.00726694
chr8	38770992	38771091	3802265	0	+	0.444444	(0.419,0.45]	chr8	365828	132	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	142	2	6.14421	6.471405000000001	6.7986	0.0127879	1.99513e-4	0.0769397	0.00452558
chr16	85245864	85245964	6515527	0	+	0.61	(0.58,1]	chr16	646377	181	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	137	2	6.15376	6.471335	6.7889099999999996	0.00104954	2.90409e-4	0.0194601	0.0059241
chr12	76067573	76067673	5455891	0	-	0.36	(0.33,0.36]	chr12	536727	1	SS3_PROX	SS3_PROX:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	415	2	4.80656	6.471220000000001	8.13588	2.20561e-4	8.18668e-5	0.00839442	0.00235997
chr1	43597447	43597547	107425	0	+	0.51	(0.485,0.523]	chr1	13241	3	SS3_PROX	SS3_PROX:INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	3	1045	2	6.27482	6.470765	6.66671	4.06746e-5	4.76292e-7	0.00354247	6.41985e-5
chr2	239344684	239344784	1392157	0	-	0.48	(0.45,0.485]	chr2	148752	202	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	369	2	5.15973	6.470465	7.7812	0.00112554	5.80934e-6	0.0202727	3.51715e-4
chr1	224385943	224386042	671485	0	-	0.353535	(0.33,0.36]	chr1	78901	9	UTR3	UTR3:EXON_MRNA	WDR26	ENSG00000162923.17	ENST00000414423.9:ENST00000678917.1:ENST00000651911.2:ENST00000678879.1:ENST00000480676.2	protein_coding	protein_coding	protein_coding	protein_coding	2	416	2	4.77445	6.470365	8.16628	2.07417e-4	9.01475e-5	0.00813372	0.00253007
chr13	31862733	31862833	5559247	0	+	0.41	(0.39,0.419]	chr13	548510	154	INTRON	INTRON	FRY	ENSG00000073910.23	ENST00000645780.1:ENST00000428783.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	151	2	5.96596	6.470355	6.97475	0.00270208	0.00156652	0.033007	0.0194594
chr5	131521921	131522021	2756179	0	-	0.41	(0.39,0.419]	chr5	270111	4	SS3_PROX	SS3_PROX:INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000514179.5:ENST00000513227.5:ENST00000504575.5:ENST00000504039.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	140	2	6.39063	6.47025	6.54987	0.00571127	5.25726e-4	0.0498083	0.00903907
chr8	100715061	100715161	4029363	0	-	0.44	(0.419,0.45]	chr8	384713	2	SS5_PROX	SS5_PROX:INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000519596.5:ENST00000519622.5:ENST00000517921.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	432	2	5.2328	6.47009	7.70738	8.55002e-4	2.99958e-5	0.0173903	0.0011275
chr16	952742	952842	6531560	0	-	0.59	(0.58,1]	chr16	648704	1	SS3_PROX	SS3_PROX:INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1:ENST00000566609.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	143	2	5.96814	6.469955000000001	6.97177	7.01049e-4	5.06433e-4	0.0156107	0.00881473
chr20	26009984	26010081	7452323	0	+	0.628866	(0.58,1]	chr20	775551	3	EXON_LNCRNA	EXON_LNCRNA	ENSG00000287569	ENSG00000287569.1	ENST00000668826.1	lncRNA	lncRNA	lncRNA	lncRNA	3	906	2	6.38796	6.469125	6.55029	2.62518e-5	5.21605e-8	0.00292399	1.54848e-5
chr1	146987702	146987785	232264	0	+	0.445783	(0.419,0.45]	chr1	25717	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF12	ENSG00000268043.8	ENST00000617931.4:ENST00000611443.4:ENST00000617844.4:ENST00000439206.6:ENST00000613714.2	protein_coding	protein_coding	protein_coding	protein_coding	0	152	2	5.95751	6.468965	6.98042	0.00316046	0.0017735	0.0359603	0.02121
chr14	71006055	71006154	5874210	0	+	0.545455	(0.523,0.58]	chr14	573469	98	INTRON	INTRON	PCNX1	ENSG00000100731.16	ENST00000554879.5:ENST00000304743.7:ENST00000439984.7:ENST00000556846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	138	2	6.312	6.4688	6.6256	0.00333843	3.69994e-4	0.0368376	0.00704866
chr16	81544281	81544381	6508736	0	+	0.44	(0.419,0.45]	chr16	645911	484	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	141	2	6.35897	6.4685500000000005	6.57813	0.00629696	6.44911e-4	0.0523832	0.0104285
chr22	46639057	46639157	7744568	0	+	0.48	(0.45,0.485]	chr22	812052	7	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	0	148	2	5.99015	6.46847	6.94679	0.00214762	0.00110015	0.0291055	0.015136
chr6	169650845	169650942	3304372	0	-	0.536082	(0.523,0.58]	chr6	319869	12	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	295	2	5.47717	6.468185	7.4592	6.56487e-4	2.96207e-5	0.0150669	0.00111477
chr4	709459	709559	1993722	0	+	0.38	(0.36,0.39]	chr4	203088	31	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	319	2	5.72177	6.46804	7.21431	0.00169475	2.4372e-5	0.0255129	9.70409e-4
chr21	45453622	45453722	7630799	0	+	0.62	(0.58,1]	chr21	797656	478	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	132	2	6.1942	6.46792	6.74164	0.00368616	4.4971e-5	0.0389784	0.00152119
chr7	76349424	76349524	3609673	0	-	0.42	(0.419,0.45]	chr7	348616	188	INTRON	INTRON	YWHAG	ENSG00000170027.7	ENST00000307630.5	protein_coding	protein_coding	protein_coding	protein_coding	0	140	2	6.44952	6.467775	6.48603	0.00734278	5.09118e-4	0.0570055	0.00884498
chr12	24947179	24947275	5396052	0	-	0.416667	(0.39,0.419]	chr12	528333	10	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000342945.9:ENST00000539780.5:ENST00000546285.1:ENST00000355164.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	420	2	5.11023	6.467725	7.82522	5.55942e-4	3.81653e-5	0.0137234	0.00134517
chr8	17096960	17097060	3761451	0	+	0.46	(0.45,0.485]	chr8	361255	60	INTRON	INTRON	MICU3	ENSG00000155970.12	ENST00000318063.10:ENST00000519044.5	protein_coding	protein_coding	protein_coding	protein_coding	2	414	2	5.33427	6.46763	7.60099	6.06072e-4	1.3357e-5	0.0144497	6.31723e-4
chr9	37123155	37123253	4148318	0	+	0.44898	(0.419,0.45]	chr9	394637	11	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000322831.6:ENST00000461038.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	142	2	6.28712	6.46746	6.6478	0.00559992	7.76382e-4	0.0493906	0.0118807
chr10	102647616	102647716	4576500	0	+	0.59	(0.58,1]	chr10	437280	14	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	131	2	6.35646	6.46734	6.57822	0.00264106	7.66421e-5	0.0325876	0.00224403
chr22	33466654	33466754	7798318	0	-	0.47	(0.45,0.485]	chr22	817588	282	INTRON	INTRON	LARGE1	ENSG00000133424.22	ENST00000608642.6:ENST00000609799.6:ENST00000610186.6:ENST00000397394.8:ENST00000413114.6:ENST00000676070.1:ENST00000674543.1:ENST00000676370.1:ENST00000354992.7:ENST00000402320.6:ENST00000675416.1:ENST00000676132.1:ENST00000676126.1:ENST00000675382.1:ENST00000676031.1:ENST00000674668.1:ENST00000674999.1:ENST00000674708.1:ENST00000674780.1:ENST00000674789.1:ENST00000675277.1:ENST00000421768.2:ENST00000434071.6:ENST00000432776.6:ENST00000423375.2:ENST00000430220.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	137	2	6.34655	6.467305	6.58806	0.00642055	2.14087e-4	0.0529785	0.00475596
chr10	132573542	132573642	4617196	0	+	0.53	(0.523,0.58]	chr10	441139	350	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	137	2	6.17383	6.4667200000000005	6.75961	0.00760615	1.00121e-4	0.0579698	0.00274217
chr8	108462166	108462265	3902509	0	+	0.474747	(0.45,0.485]	chr8	372963	59	INTRON	INTRON	EMC2	ENSG00000104412.8	ENST00000220853.8:ENST00000517784.5:ENST00000519642.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	137	2	6.42921	6.466645	6.50408	0.00554658	2.71658e-4	0.0492398	0.00565001
chr10	18567460	18567560	4642403	0	-	0.44	(0.419,0.45]	chr10	443321	151	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	140	2	6.42741	6.46617	6.50493	0.00711588	5.39517e-4	0.0560048	0.00920925
chr10	18570458	18570558	4642433	0	-	0.44	(0.419,0.45]	chr10	443321	181	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	140	2	6.42741	6.46617	6.50493	0.00711588	5.39517e-4	0.0560048	0.00920925
chr16	16158209	16158309	6556437	0	-	0.39	(0.36,0.39]	chr16	653065	4	SS3_PROX	SS3_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	314	2	5.18303	6.465985	7.74894	6.20188e-4	1.19756e-4	0.0146109	0.00313817
chr1	92606883	92606981	529720	0	-	0.561224	(0.523,0.58]	chr1	62138	11	INTRON	INTRON	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2:ENST00000491940.5	protein_coding	protein_coding	protein_coding	protein_coding	0	136	2	6.45466	6.465915	6.47717	0.00439843	2.45921e-4	0.0429852	0.00524396
chr17	19665347	19665447	6696192	0	+	0.4	(0.39,0.419]	chr17	672343	3	SS5_PROX	SS5_PROX:INTRON	ALDH3A2	ENSG00000072210.19	ENST00000581518.6:ENST00000673136.1:ENST00000672465.1:ENST00000631291.2:ENST00000672357.1:ENST00000579855.5:ENST00000176643.11:ENST00000339618.8:ENST00000672564.1:ENST00000671878.1:ENST00000582991.6:ENST00000395575.7:ENST00000672487.1:ENST00000630662.2:ENST00000472059.6:ENST00000672567.1:ENST00000672709.1:ENST00000672059.1:ENST00000673472.1:ENST00000672608.1:ENST00000476965.5:ENST00000574078.3:ENST00000673064.1:ENST00000673516.1:ENST00000672591.1:ENST00000571163.2:ENST00000573947.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	516	2	4.47506	6.465865000000001	8.45667	0.0022225	1.25015e-6	0.0296515	1.21293e-4
chr16	87917863	87917962	6657544	0	-	0.454545	(0.45,0.485]	chr16	666059	126	INTRON	INTRON	CA5A	ENSG00000174990.8	ENST00000649158.1:ENST00000648177.1:ENST00000649794.3:ENST00000648022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	137	2	6.30338	6.465835	6.62829	0.00692617	1.90839e-4	0.0553898	0.0043642
chr17	49665635	49665734	6925653	0	-	0.454545	(0.45,0.485]	chr17	705495	182	INTRON	INTRON	SPOP	ENSG00000121067.19	ENST00000393328.6:ENST00000504102.6:ENST00000347630.6:ENST00000665825.1:ENST00000514121.6:ENST00000659760.1:ENST00000509079.6:ENST00000671445.1:ENST00000513080.6:ENST00000505581.5:ENST00000506399.5:ENST00000507970.5:ENST00000515508.6:ENST00000504212.5:ENST00000508805.5:ENST00000451526.6:ENST00000502385.1:ENST00000509765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	137	2	6.44916	6.465730000000001	6.4823	0.00535292	2.88849e-4	0.0480663	0.00590733
chr19	41905361	41905425	7264278	0	+	0.46875	(0.45,0.485]	chr19	745341	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARHGEF1	ENSG00000076928.18	ENST00000600274.5:ENST00000354532.8:ENST00000599846.5:ENST00000347545.8:ENST00000378152.8:ENST00000337665.8:ENST00000599589.5:ENST00000595897.5:ENST00000595723.5:ENST00000600517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	137	2	6.44916	6.465730000000001	6.4823	0.00535292	2.88849e-4	0.0480663	0.00590733
chr19	39157350	39157449	7259582	0	+	0.515152	(0.485,0.523]	chr19	744161	1	INTRON	INTRON	PAK4	ENSG00000130669.17	ENST00000602004.1:ENST00000599470.5:ENST00000360442.8:ENST00000321944.8:ENST00000593480.5:ENST00000358301.7:ENST00000593690.5:ENST00000599386.5:ENST00000599657.5	protein_coding	protein_coding	protein_coding	protein_coding	0	137	2	6.35753	6.464835	6.57214	0.0036605	3.41236e-4	0.0389784	0.00667174
chr22	50681577	50681674	7754985	0	+	0.505155	(0.485,0.523]	chr22	812716	18	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	137	2	6.35753	6.464835	6.57214	0.0036605	3.41236e-4	0.0389784	0.00667174
chr20	8180858	8180958	7427068	0	+	0.3	(0.29,0.33]	chr20	773674	301	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	877	2	6.05047	6.464700000000001	6.87893	2.1206e-5	5.31785e-6	0.00267772	3.29318e-4
chr1	19195944	19196043	410000	0	-	0.424242	(0.419,0.45]	chr1	47866	20	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	0	149	2	6.01795	6.46461	6.91127	0.00356503	0.00152916	0.0383188	0.0191213
chr18	76424759	76424859	7179367	0	-	0.57	(0.523,0.58]	chr18	730080	441	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	136	2	6.43184	6.46421	6.49658	0.00424382	2.62665e-4	0.0422099	0.00552802
chr3	37863077	37863177	1443274	0	+	0.6	(0.58,1]	chr3	153956	4	INTRON	INTRON	CTDSPL	ENSG00000144677.15	ENST00000273179.10:ENST00000443503.6:ENST00000435525.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	277	2	5.26466	6.46401	7.66336	1.43838e-4	3.0948e-5	0.00669515	0.00115425
chr3	128348161	128348261	1562580	0	+	0.33	(0.29,0.33]	chr3	165315	59	INTRON	INTRON	EEFSEC	ENSG00000132394.11	ENST00000254730.11:ENST00000483457.1	protein_coding	protein_coding	protein_coding	protein_coding	0	139	2	6.226	6.463895	6.70179	0.00252058	5.29368e-4	0.031696	0.0090868
chr5	54079974	54080074	2656087	0	-	0.37	(0.36,0.39]	chr5	263515	40	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	142	2	6.22055	6.46387	6.70719	0.00423228	8.14665e-4	0.0422099	0.0123172
chr4	4548931	4549029	2006784	0	+	0.44898	(0.419,0.45]	chr4	204900	37	INTRON	INTRON	STX18-AS1	ENSG00000247708.8	ENST00000664571.1:ENST00000670162.1:ENST00000656969.1:ENST00000664283.1:ENST00000507244.6:ENST00000663324.1:ENST00000608184.2:ENST00000659678.1:ENST00000653097.1:ENST00000499430.7:ENST00000512438.6:ENST00000610009.5:ENST00000670249.1:ENST00000502693.1:ENST00000665126.1:ENST00000669065.1:ENST00000667824.1:ENST00000655855.1	lncRNA	lncRNA	lncRNA	lncRNA	1	387	2	5.10139	6.463850000000001	7.82631	0.00179348	1.05073e-5	0.0262815	5.33293e-4
chr6	170399665	170399765	3076576	0	+	0.43	(0.419,0.45]	chr6	299192	37	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	7	2506	2	6.30235	6.463369999999999	6.62439	7.76597e-5	9.09826e-8	0.00492182	2.21452e-5
chr17	43545215	43545315	6739017	0	+	0.61	(0.58,1]	chr17	678632	4	SS5_PROX	SS5_PROX:INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	5	1474	2	6.36174	6.462935	6.56413	5.3782e-6	4.16851e-8	0.00140527	1.33096e-5
chr9	81652083	81652183	4322573	0	-	0.37	(0.36,0.39]	chr9	413007	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TLE1	ENSG00000196781.16	ENST00000376499.8:ENST00000418319.5:ENST00000376463.3	protein_coding	protein_coding	protein_coding	protein_coding	0	140	2	6.32052	6.462820000000001	6.60512	0.00506051	6.27541e-4	0.0465519	0.0102323
chr16	31757881	31757979	6441097	0	+	0.346939	(0.33,0.36]	chr16	638752	23	UTR3	UTR3:EXON_MRNA:INTRON	KRBOX5	ENSG00000197302.11	ENST00000539915.5:ENST00000316491.14:ENST00000529515.2:ENST00000534277.5:ENST00000531864.6:ENST00000689850.1:ENST00000534369.1:ENST00000542684.5:ENST00000544044.1:ENST00000692451.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	564	2	4.63238	6.462635000000001	8.29289	1.6044e-4	4.39911e-5	0.00709822	0.00149891
chr16	85233365	85233465	6515402	0	+	0.62	(0.58,1]	chr16	646377	56	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	148	2	5.82964	6.462395000000001	7.09515	7.58111e-4	5.31842e-4	0.0134466	0.0117078
chr7	73597813	73597913	3602834	0	-	0.52	(0.485,0.523]	chr7	347627	1	SS3_PROX	SS3_PROX:INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	296	2	5.56751	6.462325	7.35714	7.98038e-4	2.32773e-5	0.0167692	9.36813e-4
chr7	2279104	2279203	3532967	0	-	0.606061	(0.58,1]	chr7	341203	4	INTRON	INTRON	SNX8	ENSG00000106266.11	ENST00000222990.8:ENST00000435060.5:ENST00000457286.5:ENST00000435336.5:ENST00000494722.1:ENST00000447136.1:ENST00000419693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	131	2	6.44222	6.462285	6.48235	0.00202884	1.18459e-4	0.0283135	0.00311099
chr2	172434964	172435064	955520	0	+	0.38	(0.36,0.39]	chr2	104992	66	INTRON	INTRON	ITGA6	ENSG00000091409.16	ENST00000412899.5:ENST00000409532.5:ENST00000684293.1:ENST00000409080.6:ENST00000442250.6:ENST00000264107.12:ENST00000458358.5	protein_coding	protein_coding	protein_coding	protein_coding	0	139	2	6.224	6.46222	6.70044	0.00967792	2.25359e-4	0.0661428	0.00492301
chr12	57342281	57342381	5440908	0	-	0.57	(0.523,0.58]	chr12	535502	9	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	0	136	2	6.40865	6.4621949999999995	6.51574	0.00409625	2.80789e-4	0.0413652	0.00578259
chr20	18632783	18632883	7443760	0	+	0.44	(0.419,0.45]	chr20	774758	2	INTRON	INTRON	ENSG00000284776:DTD1	ENSG00000284776.1:ENSG00000125821.13	ENST00000618693.4:ENST00000647441.1:ENST00000377452.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	316	2	5.53516	6.462185	7.38921	0.00152802	4.84065e-5	0.0240842	0.00160761
chr19	12268117	12268217	7334229	0	-	0.5	(0.485,0.523]	chr19	758782	174	INTRON	INTRON	ZNF44	ENSG00000197857.15	ENST00000600003.5:ENST00000393337.7:ENST00000397742.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	137	2	6.33317	6.46175	6.59033	0.00353829	3.65589e-4	0.0381878	0.00700609
chr2	127387451	127387538	1265650	0	-	0.804598	(0.58,1]	chr2	136377	1	UTR5	UTR5:EXON_MRNA:INTRON	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5	protein_coding	protein_coding	protein_coding	protein_coding	1	356	2	5.69457	6.461655	7.22874	1.40745e-4	8.67357e-6	0.00661039	4.6303e-4
chr2	239268986	239269086	1391398	0	-	0.46	(0.45,0.485]	chr2	148740	174	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	140	2	6.03961	6.460929999999999	6.88225	0.0108974	9.12292e-5	0.0707085	0.00255062
chr5	78812617	78812717	2704953	0	-	0.36	(0.33,0.36]	chr5	266706	293	INTRON	INTRON	ARSB	ENSG00000113273.17	ENST00000264914.10	protein_coding	protein_coding	protein_coding	protein_coding	0	138	2	6.37866	6.460694999999999	6.54273	0.0047107	4.63001e-4	0.044852	0.00825119
chr13	112693344	112693444	5652573	0	+	0.59	(0.58,1]	chr13	554894	25	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5	protein_coding	protein_coding	protein_coding	protein_coding	2	675	2	6.20777	6.460305	6.71284	4.07942e-5	1.68869e-7	0.00354247	3.25988e-5
chr12	772561	772661	5148825	0	+	0.21	[0,0.29]	chr12	500570	179	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	0	133	2	6.42488	6.46022	6.49556	0.00220919	2.14721e-4	0.0295736	0.00476625
chr12	56152631	56152731	5238885	0	+	0.48	(0.45,0.485]	chr12	509833	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MYL6B	ENSG00000196465.11	ENST00000553066.5:ENST00000550443.5:ENST00000695999.1:ENST00000696001.1:ENST00000696000.1:ENST00000405661.8:ENST00000551834.5:ENST00000552568.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	142	2	6.13678	6.460179999999999	6.78358	0.00291315	7.46272e-4	0.0342042	0.0115813
chr15	40106448	40106538	6235221	0	-	0.455556	(0.45,0.485]	chr15	613043	1	SS3_ADJ	SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BMF	ENSG00000104081.14	ENST00000354670.9:ENST00000561360.5:ENST00000558774.5:ENST00000559701.5:ENST00000557870.1:ENST00000560430.1	protein_coding	protein_coding	protein_coding	protein_coding	0	142	2	6.13678	6.460179999999999	6.78358	0.00291315	7.46272e-4	0.0342042	0.0115813
chr4	6664910	6665009	2186186	0	-	0.464646	(0.45,0.485]	chr4	221877	25	INTRON	INTRON	LINC02482	ENSG00000251580.3	ENST00000647523.2:ENST00000667300.1	lncRNA	lncRNA	lncRNA	lncRNA	0	138	2	6.14119	6.4600100000000005	6.77883	0.00917101	1.23522e-4	0.064285	0.00321265
chr13	93977432	93977532	5625288	0	+	0.43	(0.419,0.45]	chr13	553064	1465	INTRON	INTRON	GPC6	ENSG00000183098.11	ENST00000377047.9	protein_coding	protein_coding	protein_coding	protein_coding	0	140	2	6.19164	6.45982	6.728	0.0118587	2.41873e-4	0.0740271	0.00518926
chr2	238269665	238269760	1388930	0	-	0.505263	(0.485,0.523]	chr2	148518	3	INTRON	INTRON	PER2	ENSG00000132326.12	ENST00000254657.8:ENST00000355768.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	302	2	5.10939	6.45936	7.80933	3.17729e-4	9.76199e-5	0.0101378	0.00268525
chr2	235803182	235803281	1065642	0	+	0.464646	(0.45,0.485]	chr2	115712	33	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	137	2	6.39173	6.45901	6.52629	0.00466172	3.72107e-4	0.044542	0.00707906
chr14	71098413	71098512	5875164	0	+	0.393939	(0.39,0.419]	chr14	573613	42	INTRON	INTRON	PCNX1	ENSG00000100731.16	ENST00000304743.7:ENST00000439984.7:ENST00000554691.5:ENST00000557428.1:ENST00000556272.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	138	2	6.35419	6.45897	6.56375	0.0079671	3.30465e-4	0.0596361	0.00649658
chr2	235504840	235504940	1062644	0	+	0.4	(0.39,0.419]	chr2	115651	96	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	138	2	6.39551	6.45894	6.52237	0.00743138	3.69587e-4	0.057548	0.00704866
chr16	57377558	57377656	6466040	0	+	0.418367	(0.39,0.419]	chr16	641366	7	UTR5	UTR5:EXON_MRNA:INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1:ENST00000565912.1	protein_coding	protein_coding	protein_coding	protein_coding	0	138	2	6.33308	6.458539999999999	6.584	0.00825437	3.12789e-4	0.0609913	0.00625974
chr1	52318296	52318395	126563	0	+	0.393939	(0.39,0.419]	chr1	15618	140	INTRON	INTRON	ZFYVE9	ENSG00000157077.16	ENST00000287727.8:ENST00000371591.2:ENST00000357206.6:ENST00000469134.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	138	2	6.41573	6.45848	6.50123	0.00718148	3.91245e-4	0.056408	0.00735482
chr16	18844434	18844533	6560194	0	-	0.535354	(0.523,0.58]	chr16	654007	16	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000563448.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	146	2	5.9758	6.45843	6.94106	0.00183008	9.36996e-4	0.0266451	0.0135546
chr5	73699073	73699173	2452421	0	+	0.47	(0.45,0.485]	chr5	244920	138	INTRON	INTRON	ARHGEF28	ENSG00000214944.10	ENST00000545377.5:ENST00000296794.10:ENST00000513042.7:ENST00000509848.5:ENST00000426542.6:ENST00000437974.5	protein_coding	protein_coding	protein_coding	protein_coding	1	312	2	5.00438	6.45843	7.91248	3.25318e-4	1.54619e-4	0.010266	0.00376396
chr11	485051	485150	4784656	0	+	0.59596	(0.58,1]	chr11	457913	46	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	153	2	5.51813	6.45786	7.39759	0.013519	4.81832e-6	0.0792526	3.07804e-4
chr1	35371035	35371127	88171	0	+	0.391304	(0.39,0.419]	chr1	10146	3	SS5_PROX	SS5_PROX:INTRON	ZMYM4	ENSG00000146463.12	ENST00000314607.11:ENST00000457946.1	protein_coding	protein_coding	protein_coding	protein_coding	0	138	2	6.43567	6.457725	6.47978	0.00694268	4.14458e-4	0.0553898	0.00767522
chr2	17739771	17739865	1094768	0	-	0.510638	(0.485,0.523]	chr2	119295	11	INTRON	INTRON	SMC6	ENSG00000163029.16	ENST00000351948.8:ENST00000448223.7:ENST00000402989.5:ENST00000446852.5:ENST00000381272.5	protein_coding	protein_coding	protein_coding	protein_coding	0	135	2	6.35532	6.45767	6.56002	0.00545609	1.90696e-4	0.0486984	0.0043642
chr14	30947563	30947663	5951208	0	-	0.33	(0.29,0.33]	chr14	583098	3	SS3_PROX	SS3_PROX:INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000555152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	135	2	6.42465	6.457435	6.49022	0.00427399	2.52154e-4	0.042386	0.00535512
chr1	44495936	44496036	112962	0	+	0.45	(0.419,0.45]	chr1	14018	762	INTRON	INTRON	RNF220	ENSG00000187147.18	ENST00000355387.6:ENST00000361799.7:ENST00000372247.6	protein_coding	protein_coding	protein_coding	protein_coding	0	256	2	4.78575	6.45729	8.12883	0.0224633	3.89828e-4	0.108193	0.0113348
chr20	36314703	36314803	7469134	0	+	0.43	(0.419,0.45]	chr20	777805	78	INTRON	INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10	protein_coding	protein_coding	protein_coding	protein_coding	0	140	2	6.16812	6.457050000000001	6.74598	0.0123115	2.30334e-4	0.0756356	0.00498593
chr11	18011806	18011903	5015377	0	-	0.639175	(0.58,1]	chr11	484704	13	INTRON	INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528200.5:ENST00000532265.5:ENST00000529728.5:ENST00000530613.5:ENST00000532389.5:ENST00000530925.5:ENST00000533328.5:ENST00000532212.5:ENST00000524716.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	375	2	4.70407	6.457035	8.21	4.32988e-5	3.91219e-5	0.00349113	0.00148345
chr5	108303308	108303408	2739020	0	-	0.46	(0.45,0.485]	chr5	268863	787	INTRON	INTRON	FBXL17	ENSG00000145743.18	ENST00000542267.7:ENST00000496714.2:ENST00000481160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	136	2	6.34655	6.457034999999999	6.56752	0.00642055	2.2698e-4	0.0529785	0.00495264
chr11	122744197	122744297	4958986	0	+	0.52	(0.485,0.523]	chr11	479003	167	INTRON	INTRON	UBASH3B	ENSG00000154127.10	ENST00000284273.6:ENST00000526386.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	167	2	5.39369	6.45702	7.52035	0.0275819	1.00801e-5	0.112782	5.15349e-4
chr4	2826054	2826144	2000379	0	+	0.688889	(0.58,1]	chr4	203974	5	INTRON	INTRON	SH3BP2	ENSG00000087266.17	ENST00000503393.8:ENST00000504294.5:ENST00000508385.5:ENST00000511663.5:ENST00000512014.5:ENST00000435136.8:ENST00000511185.5:ENST00000511747.6:ENST00000356331.9:ENST00000515737.5:ENST00000515183.5:ENST00000505941.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	290	2	6.03028	6.45676	6.88324	8.53086e-4	2.08302e-6	0.0173632	1.71281e-4
chr1	43765689	43765789	108913	0	+	0.47	(0.45,0.485]	chr1	13503	265	INTRON	INTRON	ST3GAL3	ENSG00000126091.21	ENST00000646096.1:ENST00000532911.6:ENST00000643597.1:ENST00000643886.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000646109.1:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000479383.6:ENST00000647482.1:ENST00000645394.1:ENST00000647128.1:ENST00000484868.2:ENST00000461066.6:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1:ENST00000642194.1:ENST00000372368.7:ENST00000646686.1:ENST00000372366.6:ENST00000361812.9:ENST00000469715.6:ENST00000372369.5:ENST00000372367.5:ENST00000372365.5:ENST00000528371.5:ENST00000533212.5:ENST00000530581.5:ENST00000531816.1:ENST00000531993.6:ENST00000490541.6:ENST00000372362.6:ENST00000531451.5:ENST00000646416.1:ENST00000645117.1:ENST00000533933.6:ENST00000332628.11:ENST00000643813.1:ENST00000644922.1:ENST00000644287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	139	2	6.24422	6.456705	6.66919	0.0035963	5.58345e-4	0.0384878	0.00944382
chr19	35003325	35003424	7244893	0	+	0.585859	(0.58,1]	chr19	742073	1	INTRON	INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	136	2	6.12444	6.456675	6.7889099999999996	0.00104954	3.17437e-4	0.0194601	0.00632787
chrX	9479920	9480019	7842593	0	+	0.474747	(0.45,0.485]	chrX	822398	141	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	0	137	2	6.36817	6.45656	6.54495	0.00450754	3.97249e-4	0.0436138	0.00741985
chr7	222546	222646	3305880	0	+	0.66	(0.58,1]	chr7	320161	132	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	130	2	6.33437	6.456295	6.57822	0.00276493	7.66421e-5	0.0332418	0.00224403
chr2	111297231	111297331	1251599	0	-	0.48	(0.45,0.485]	chr2	134852	35	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000673962.1:ENST00000674132.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000662889.1:ENST00000665096.1:ENST00000674092.1:ENST00000673958.1:ENST00000673770.1:ENST00000673961.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000656303.1:ENST00000666367.1:ENST00000666652.1:ENST00000669050.1:ENST00000667218.1:ENST00000656067.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000673700.1:ENST00000443467.6:ENST00000451884.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000655573.1:ENST00000656416.1:ENST00000662384.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1	lncRNA	lncRNA	lncRNA	lncRNA	0	140	2	6.01306	6.455925000000001	6.89879	0.0113949	8.68871e-5	0.0723462	0.00246367
chr1	30933842	30933942	434612	0	-	0.38	(0.36,0.39]	chr1	51446	1	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000530669.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	140	2	6.2714	6.455674999999999	6.63995	0.00476216	7.13729e-4	0.0450109	0.0112151
chr2	55008186	55008286	1148106	0	-	0.37	(0.36,0.39]	chr2	125459	201	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	0	140	2	6.2714	6.455674999999999	6.63995	0.00476216	7.13729e-4	0.0450109	0.0112151
chr6	1738078	1738178	3080252	0	-	0.45	(0.419,0.45]	chr6	299476	112	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	382	2	4.89529	6.455665	8.01604	0.00260946	5.96295e-6	0.0323859	3.5765e-4
chr5	1466056	1466152	2609384	0	-	0.666667	(0.58,1]	chr5	259790	19	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000503252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	182	2	5.31036	6.45516	7.59996	0.00312721	1.66865e-4	0.0311915	0.00722822
chr3	149835538	149835637	1595531	0	+	0.343434	(0.33,0.36]	chr3	168720	126	INTRON	INTRON	RNF13	ENSG00000082996.20	ENST00000344229.7:ENST00000470151.5:ENST00000466478.5:ENST00000491086.5:ENST00000392894.8:ENST00000467977.5:ENST00000474348.5:ENST00000467996.1:ENST00000468648.5:ENST00000459632.5:ENST00000466795.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	145	2	6.03758	6.45512	6.87266	0.00258098	0.00113952	0.0321738	0.0155794
chr11	31500588	31500688	5021639	0	-	0.43	(0.419,0.45]	chr11	485692	120	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	141	2	6.26235	6.455075	6.6478	0.00559992	8.27298e-4	0.0493906	0.0124589
chr5	176588630	176588730	2596941	0	+	0.51	(0.485,0.523]	chr5	257748	2	SS3_PROX	SS3_PROX:INTRON	CDHR2	ENSG00000074276.11	ENST00000510636.5:ENST00000261944.10:ENST00000506348.1:ENST00000513031.5:ENST00000508085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	138	2	6.2314	6.454689999999999	6.67798	0.00300122	4.86354e-4	0.0348875	0.00857996
chr6	10584961	10585061	2850395	0	+	0.53	(0.523,0.58]	chr6	278689	273	INTRON	INTRON	GCNT2	ENSG00000111846.20	ENST00000410107.5:ENST00000489225.5:ENST00000397423.7:ENST00000495262.7:ENST00000475577.5:ENST00000489819.5:ENST00000474518.1:ENST00000379597.7:ENST00000485764.1:ENST00000461400.1:ENST00000316170.9:ENST00000459872.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	135	2	6.43184	6.454505	6.47717	0.00439843	2.62665e-4	0.0429852	0.00552802
chr11	68511442	68511542	4883989	0	+	0.5	(0.485,0.523]	chr11	470702	58	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	297	2	5.20424	6.454470000000001	7.7047	3.94091e-4	7.28824e-5	0.0113656	0.00216451
chr11	68558380	68558472	4884473	0	+	0.25	[0,0.29]	chr11	470762	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PPP6R3	ENSG00000110075.15	ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000531432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	132	2	6.37148	6.45437	6.53726	0.00285225	1.53535e-4	0.0338759	0.00374573
chr9	83451335	83451435	4325062	0	-	0.47	(0.45,0.485]	chr9	413145	613	INTRON	INTRON	FRMD3	ENSG00000172159.16	ENST00000376438.5:ENST00000304195.8:ENST00000621208.4	protein_coding	protein_coding	protein_coding	protein_coding	0	137	2	6.16551	6.454075	6.74264	0.00879664	1.37232e-4	0.0630845	0.00346319
chr11	43724116	43724216	4846542	0	+	0.37	(0.36,0.39]	chr11	463523	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000283341:HSD17B12	ENSG00000283341.3:ENSG00000149084.13	ENST00000532864.6:ENST00000529261.5:ENST00000527433.6:ENST00000531185.5:ENST00000278353.10:ENST00000636007.1:ENST00000395700.4:ENST00000637401.1:ENST00000636722.1:ENST00000638034.1:ENST00000527213.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	0	139	2	6.32052	6.45395	6.58738	0.00521906	6.27541e-4	0.0475638	0.0102323
chr11	122744697	122744797	4958991	0	+	0.43	(0.419,0.45]	chr11	479003	172	INTRON	INTRON	UBASH3B	ENSG00000154127.10	ENST00000284273.6:ENST00000526386.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	220	2	4.87598	6.45338	8.03078	0.0768574	5.70487e-6	0.174882	3.47144e-4
chr4	113696159	113696259	2313780	0	-	0.5	(0.485,0.523]	chr4	232470	340	INTRON	INTRON	CAMK2D	ENSG00000145349.18	ENST00000683023.1:ENST00000296402.9:ENST00000511664.6:ENST00000394524.7:ENST00000342666.9:ENST00000514328.5:ENST00000515496.5:ENST00000394522.7:ENST00000505990.5:ENST00000379773.6:ENST00000508738.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	135	2	6.24485	6.453094999999999	6.66134	0.00665813	1.41724e-4	0.0540577	0.00352935
chr17	18066428	18066527	6690920	0	+	0.373737	(0.36,0.39]	chr17	671497	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	GID4	ENSG00000141034.10	ENST00000268719.9:ENST00000579871.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	154	2	5.83748	6.452995	7.06851	0.00221433	0.00213426	0.0295806	0.0240825
chr8	133296503	133296507	4084293	0	-	0.25	[0,0.29]	chr8	388367	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000522738.1:ENST00000523892.5:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	217	2	4.98304	6.452945	7.92285	0.00935344	9.27329e-5	0.0646157	0.00535424
chr7	47354024	47354124	3587331	0	-	0.34	(0.33,0.36]	chr7	346030	73	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	140	2	6.20506	6.45282	6.70058	0.00354175	7.36479e-4	0.0382067	0.0114654
chr4	77819132	77819232	2256073	0	-	0.68	(0.58,1]	chr4	227833	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CNOT6L	ENSG00000138767.14	ENST00000504123.7:ENST00000649644.1:ENST00000512485.6:ENST00000504804.7:ENST00000506166.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	379	2	4.62936	6.4523	8.27524	5.58821e-5	3.34154e-5	0.00320976	0.00178087
chr10	79221372	79221472	4533575	0	+	0.68	(0.58,1]	chr10	432457	47	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	273	2	5.31369	6.45218	7.59067	1.70527e-4	2.61641e-5	0.00729818	0.00101763
chr2	240624983	240625082	1075193	0	+	0.606061	(0.58,1]	chr2	116654	56	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	2	680	2	6.35585	6.452145	6.54844	2.84031e-5	3.11468e-7	0.00300073	4.86604e-5
chr14	103105661	103105750	5921875	0	+	0.651685	(0.58,1]	chr14	579221	2	INTRON	INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	271	2	5.42945	6.451855	7.47426	2.23584e-4	1.75493e-5	0.00845454	7.66163e-4
chr6	16308255	16308355	3099912	0	-	0.57	(0.523,0.58]	chr6	300832	10	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8	protein_coding	protein_coding	protein_coding	protein_coding	0	136	2	6.312	6.450950000000001	6.5899	0.00356891	3.69994e-4	0.0383188	0.00704866
chr2	238370272	238370372	1073634	0	+	0.42	(0.419,0.45]	chr2	116402	138	INTRON	INTRON	TRAF3IP1	ENSG00000204104.12	ENST00000391993.7:ENST00000373327.5:ENST00000462122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	138	2	6.36713	6.450925	6.53472	0.00893106	4.06527e-4	0.0637469	0.00755833
chr8	144741382	144741482	4101097	0	-	0.38	(0.36,0.39]	chr8	390597	176	INTRON	INTRON	ZNF251	ENSG00000198169.9	ENST00000524394.2:ENST00000292562.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	141	2	6.19443	6.45081	6.70719	0.00423228	8.7159e-4	0.0422099	0.0128912
chr2	3298994	3299093	1081097	0	-	0.484848	(0.45,0.485]	chr2	117633	163	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	137	2	6.31986	6.450705	6.58155	0.00421879	4.53935e-4	0.0421633	0.00818426
chr1	43815892	43815989	109420	0	+	0.484536	(0.45,0.485]	chr1	13533	5	INTRON	INTRON	ST3GAL3	ENSG00000126091.21	ENST00000646096.1:ENST00000532911.6:ENST00000643597.1:ENST00000643886.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000646109.1:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000479383.6:ENST00000647482.1:ENST00000645394.1:ENST00000647128.1:ENST00000461066.6:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1:ENST00000642194.1:ENST00000372368.7:ENST00000646686.1:ENST00000372366.6:ENST00000361812.9:ENST00000469715.6:ENST00000372369.5:ENST00000372367.5:ENST00000372365.5:ENST00000528371.5:ENST00000533212.5:ENST00000530581.5:ENST00000531816.1:ENST00000531993.6:ENST00000490541.6:ENST00000372362.6:ENST00000531451.5:ENST00000646416.1:ENST00000645117.1:ENST00000533933.6:ENST00000332628.11:ENST00000643813.1:ENST00000644922.1:ENST00000644287.1:ENST00000647503.1:ENST00000461375.2:ENST00000642780.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	140	2	5.98601	6.450575000000001	6.91514	0.0119228	8.2790699999999993e-05	0.0741726	0.00237398
chr20	10664414	10664514	7525330	0	-	0.5	(0.485,0.523]	chr20	785557	4	SS3_PROX	SS3_PROX:INTRON	JAG1	ENSG00000101384.12	ENST00000254958.10	protein_coding	protein_coding	protein_coding	protein_coding	0	137	2	6.25753	6.45054	6.64355	0.00320229	4.52177e-4	0.0361639	0.00816702
chr11	485447	485546	4784660	0	+	0.585859	(0.58,1]	chr11	457913	50	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	139	2	5.8019	6.45048	7.09906	0.007984	1.35452e-5	0.0596361	6.38288e-4
chr2	179229818	179229918	1328059	0	-	0.42	(0.419,0.45]	chr2	141710	376	INTRON	INTRON	SESTD1	ENSG00000187231.14	ENST00000428443.8:ENST00000440010.5:ENST00000435047.5:ENST00000452991.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	527	2	4.24257	6.4504	8.65823	2.73034e-4	1.424e-4	0.0066569	0.00567583
chr3	188269650	188269750	1652955	0	+	0.59	(0.58,1]	chr3	173754	291	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	0	130	2	6.41826	6.450305	6.48235	0.00202884	1.27804e-4	0.0283135	0.00328053
chr17	80024801	80024901	6982164	0	-	0.45	(0.419,0.45]	chr17	713081	108	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7	protein_coding	protein_coding	protein_coding	protein_coding	0	142	2	6.01834	6.4503	6.88226	0.015582500000000001	1.58518e-4	0.0849828	0.00384084
chr18	79146050	79146149	7097710	0	+	0.646465	(0.58,1]	chr18	722822	18	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000586672.5:ENST00000590271.5:ENST00000490210.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	324	2	4.86045	6.450145	8.03984	9.78301e-4	4.82665e-7	0.0187475	6.46941e-5
chr20	21147944	21148043	7447982	0	+	0.494949	(0.485,0.523]	chr20	774958	19	INTRON	INTRON	KIZ	ENSG00000088970.16	ENST00000619574.4:ENST00000620891.4:ENST00000611685.4:ENST00000616848.4:ENST00000619189.5:ENST00000616679.4:ENST00000619179.4	protein_coding	protein_coding	protein_coding	protein_coding	1	363	2	5.30598	6.44997	7.59396	7.24002e-4	7.96614e-6	0.0158739	4.36503e-4
chr10	79220273	79220373	4533564	0	+	0.56	(0.523,0.58]	chr10	432457	36	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	295	2	5.204	6.449945	7.69589	4.0569e-4	7.00257e-5	0.0115298	0.00210498
chr10	79112021	79112121	4532475	0	+	0.52	(0.485,0.523]	chr10	432420	424	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	145	2	5.97221	6.449735	6.92726	0.00186327	9.86421e-4	0.0269723	0.0140716
chr3	31559131	31559231	1434262	0	+	0.41	(0.39,0.419]	chr3	153056	251	INTRON	INTRON	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	138	2	6.36745	6.449450000000001	6.53145	0.00589503	5.58995e-4	0.0506158	0.00944382
chr12	1143285	1143385	5151806	0	+	0.53	(0.523,0.58]	chr12	500827	11	INTRON	INTRON	ERC1	ENSG00000082805.21	ENST00000611180.5:ENST00000543086.7:ENST00000360905.9:ENST00000691018.1:ENST00000690948.1:ENST00000542302.6:ENST00000546231.6:ENST00000545318.3:ENST00000347735.10:ENST00000397203.7:ENST00000536573.7:ENST00000690222.1:ENST00000686476.1:ENST00000440394.7:ENST00000545948.5:ENST00000589028.6:ENST00000355446.9:ENST00000538971.6:ENST00000689995.1:ENST00000688324.1:ENST00000691177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	134	2	6.376	6.448510000000001	6.52102	0.00529293	2.02818e-4	0.047841	0.0045746
chr6	117686756	117686856	2992321	0	+	0.34	(0.33,0.36]	chr6	293135	103	INTRON	INTRON	NUS1	ENSG00000153989.8	ENST00000368494.4	protein_coding	protein_coding	protein_coding	protein_coding	1	322	2	4.86914	6.4483049999999995	8.02747	2.74418e-4	2.62741e-4	0.00943643	0.00552891
chr19	35002825	35002925	7244888	0	+	0.46	(0.45,0.485]	chr19	742071	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	322	2	4.82762	6.448265	8.06891	2.60077e-4	2.37097e-4	0.0086821	0.00549835
chr19	48153571	48153671	7394080	0	-	0.54	(0.523,0.58]	chr19	768551	3	SS5_PROX	SS5_PROX:INTRON	LIG1	ENSG00000105486.14	ENST00000263274.12:ENST00000536218.5:ENST00000427526.6:ENST00000594759.5:ENST00000594067.5:ENST00000601091.5:ENST00000613670.4:ENST00000542460.5:ENST00000595758.5:ENST00000596104.5:ENST00000599165.5:ENST00000596549.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	134	2	6.31171	6.44809	6.58447	0.00594629	1.68436e-4	0.0506158	0.00400681
chr2	10303277	10303377	718427	0	+	0.63	(0.58,1]	chr2	84013	1	SS5_PROX	SS5_PROX:INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8	protein_coding	protein_coding	protein_coding	protein_coding	1	326	2	5.30368	6.447955	7.59223	3.53915e-4	2.42364e-6	0.0107472	1.89851e-4
chr21	45499646	45499745	7631301	0	+	0.545455	(0.523,0.58]	chr21	797812	16	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	0	136	2	6.28679	6.447324999999999	6.60786	0.00345115	3.97355e-4	0.037649	0.00741985
chr1	1306671	1306771	380913	0	-	0.45	(0.419,0.45]	chr1	43019	2	SS5_PROX	SS5_PROX:INTRON	ACAP3	ENSG00000131584.19	ENST00000354700.10:ENST00000472541.5:ENST00000354980.7:ENST00000479108.5:ENST00000438966.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	312	2	5.24521	6.44716	7.64911	9.51747e-4	1.11971e-4	0.0184489	0.00298349
chr2	88625217	88625313	1215851	0	-	0.416667	(0.39,0.419]	chr2	131043	4	INTRON	INTRON	EIF2AK3	ENSG00000172071.15	ENST00000303236.9:ENST00000652099.1:ENST00000682892.1:ENST00000652423.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	308	2	5.25415	6.447045	7.63994	7.90635e-4	9.81154e-5	0.0167102	0.00269558
chr7	74468652	74468752	3391513	0	+	0.41	(0.39,0.419]	chr7	327343	141	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	0	138	2	6.34389	6.44688	6.54987	0.00571127	5.94847e-4	0.0498083	0.0098913
chr14	30981586	30981686	5951552	0	-	0.45	(0.419,0.45]	chr14	583120	172	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	383	2	5.10139	6.44675	7.79211	0.00179348	1.16296e-5	0.0262815	5.71933e-4
chr11	70818264	70818363	5062466	0	-	0.434343	(0.419,0.45]	chr11	492713	107	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	140	2	6.26235	6.446524999999999	6.6307	0.00576404	8.27298e-4	0.0500197	0.0124589
chr10	18569858	18569958	4642427	0	-	0.42	(0.419,0.45]	chr10	443321	175	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	141	2	6.21151	6.446465	6.68142	0.00529005	9.41863e-4	0.047841	0.0135546
chr5	14230340	14230440	2384222	0	+	0.51	(0.485,0.523]	chr5	238473	460	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000502816.1:ENST00000505971.5:ENST00000512070.6:ENST00000509967.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	134	2	6.39724	6.446435	6.49563	0.00505512	2.29841e-4	0.0465263	0.00498593
chr19	16368955	16369054	7343619	0	-	0.454545	(0.45,0.485]	chr19	760668	66	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	298	2	5.28283	6.4463550000000005	7.60988	5.955e-4	6.69067e-5	0.0143364	0.00203052
chr8	42005743	42005843	3969242	0	-	0.45	(0.419,0.45]	chr8	379478	178	INTRON	INTRON	KAT6A	ENSG00000083168.11	ENST00000406337.6:ENST00000265713.8:ENST00000396930.4:ENST00000648335.1:ENST00000649827.1:ENST00000485568.5:ENST00000647809.1:ENST00000648030.1:ENST00000650356.1:ENST00000470574.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	317	2	5.07497	6.44613	7.81729	6.97788e-4	1.81566e-4	0.0155984	0.00422344
chr4	886671	886770	2178469	0	-	0.666667	(0.58,1]	chr4	220626	10	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	130	2	6.16945	6.445825	6.7222	0.00387582	4.79419e-5	0.0401256	0.00159846
chr10	74874777	74874877	4517800	0	+	0.41	(0.39,0.419]	chr10	432047	276	INTRON	INTRON	KAT6B	ENSG00000156650.14	ENST00000648725.1:ENST00000648159.1:ENST00000649006.1:ENST00000649463.1:ENST00000372725.6:ENST00000650232.1:ENST00000648370.1:ENST00000648899.1:ENST00000648483.1:ENST00000648892.1:ENST00000372724.6:ENST00000649657.1:ENST00000372714.6:ENST00000649442.1:ENST00000287239.10:ENST00000648048.1:ENST00000647666.1:ENST00000649375.1:ENST00000650330.1:ENST00000650380.1:ENST00000647637.1:ENST00000372711.2:ENST00000648369.1:ENST00000650048.1:ENST00000647642.1:ENST00000650517.1:ENST00000647554.1:ENST00000648302.1:ENST00000649645.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	137	2	6.26783	6.4457450000000005	6.62366	0.00920367	2.80749e-4	0.0644228	0.00578259
chr11	125657147	125657246	4962396	0	+	0.393939	(0.39,0.419]	chr11	479612	1	INTRON	INTRON	CHEK1	ENSG00000149554.14	ENST00000428830.6:ENST00000524737.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	137	2	6.26783	6.4457450000000005	6.62366	0.00920367	2.80749e-4	0.0644228	0.00578259
chr3	71016651	71016751	1825566	0	-	0.41	(0.39,0.419]	chr3	188073	6	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000475937.6:ENST00000614176.5:ENST00000327590.9:ENST00000648426.1:ENST00000497355.7:ENST00000648748.3:ENST00000649695.3:ENST00000498215.7:ENST00000484350.5:ENST00000650387.1:ENST00000650402.1:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000491238.8:ENST00000648384.1:ENST00000648380.1:ENST00000650188.1:ENST00000650580.1:ENST00000650068.2:ENST00000468577.6:ENST00000649592.1:ENST00000648794.2:ENST00000649513.1:ENST00000649431.2:ENST00000648654.1:ENST00000649417.1:ENST00000485326.7:ENST00000647614.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	137	2	6.26783	6.4457450000000005	6.62366	0.00920367	2.80749e-4	0.0644228	0.00578259
chr8	699796	699896	3932727	0	-	0.69	(0.58,1]	chr8	376054	68	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000524138.5:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	130	2	6.3691	6.44554	6.52198	0.00186556	1.49225e-4	0.0269723	0.00367368
chr17	316929	317028	6821445	0	-	0.545455	(0.523,0.58]	chr17	689582	104	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	135	2	6.33678	6.445035	6.55329	0.00382069	3.44853e-4	0.0398603	0.00672121
chr10	132573841	132573941	4617199	0	+	0.47	(0.45,0.485]	chr10	441139	353	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	140	2	5.95844	6.444875	6.93131	0.0124835	7.8924e-5	0.0761905	0.0022885
chr16	81627589	81627689	6509573	0	+	0.64	(0.58,1]	chr16	645926	55	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	129	2	6.39965	6.44432	6.48899	0.00241374	1.02074e-4	0.0309229	0.00277572
chr21	9106901	9107001	7638077	0	-	0.33	(0.29,0.33]	chr21	798969	186	INTRON	INTRON	TEKT4P2	ENSG00000188681.12	ENST00000690061.1:ENST00000689141.1:ENST00000688310.1:ENST00000687537.1:ENST00000690096.1:ENST00000687888.1:ENST00000690389.1:ENST00000684989.1:ENST00000416067.6:ENST00000693307.1:ENST00000692383.1:ENST00000685666.1:ENST00000688451.1:ENST00000691190.1:ENST00000685532.1:ENST00000687488.1:ENST00000690713.1:ENST00000691834.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	143	2	5.99803	6.444315	6.8906	0.00174265	9.81074e-4	0.0258726	0.0140347
chr22	50234523	50234623	7827206	0	-	0.64	(0.58,1]	chr22	821200	6	INTRON	INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	270	2	5.38426	6.444255	7.50425	2.08552e-4	2.05205e-5	0.00813372	8.55169e-4
chr2	238451359	238451458	1074199	0	+	0.414141	(0.39,0.419]	chr2	116452	50	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ASB1	ENSG00000065802.12	ENST00000264607.9:ENST00000481566.1:ENST00000473306.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	137	2	6.41344	6.444095	6.47475	0.00649594	4.94825e-4	0.0532359	0.00865935
chr17	7109879	7109977	6847732	0	-	0.612245	(0.58,1]	chr17	693423	6	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	887	2	6.31175	6.444015	6.57628	1.65159e-5	1.28376e-7	0.0023408	2.73608e-5
chr14	34844699	34844799	5957170	0	-	0.51	(0.485,0.523]	chr14	583933	156	INTRON	INTRON	BAZ1A	ENSG00000198604.11	ENST00000358716.8:ENST00000360310.6:ENST00000382422.6:ENST00000553573.1:ENST00000553853.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	140	2	5.9104	6.44344	6.97648	0.0119344	5.50755e-5	0.0741726	0.00176017
chr1	246233723	246233823	703122	0	-	0.44	(0.419,0.45]	chr1	82422	401	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	147	2	5.82136	6.44329	7.06522	0.0210659	9.52125e-5	0.0996078	0.00262959
chr10	127428501	127428601	4612233	0	+	0.54	(0.523,0.58]	chr10	440909	21	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2	protein_coding	protein_coding	protein_coding	protein_coding	0	134	2	6.22127	6.44311	6.66495	0.00699217	1.32802e-4	0.0555241	0.00337193
chr8	38798578	38798678	3802548	0	+	0.44	(0.419,0.45]	chr8	365849	94	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5:ENST00000522544.5:ENST00000524354.5:ENST00000523239.5:ENST00000317827.9:ENST00000276520.12:ENST00000520973.5:ENST00000521528.6:ENST00000521935.5:ENST00000523834.1:ENST00000521154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	146	2	6.01795	6.443045	6.86814	0.00384173	0.00152916	0.0399957	0.0191213
chr13	113054301	113054387	5656179	0	+	0.534884	(0.523,0.58]	chr13	555188	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	139	2	6.1255	6.442835	6.76017	0.00258949	6.23263e-4	0.0321874	0.0101764
chr14	20687399	20687497	5755014	0	+	0.530612	(0.523,0.58]	chr14	564397	23	INTRON	INTRON	ANG:RNASE4:ENSG00000259171	ENSG00000214274.10:ENSG00000258818.4:ENSG00000259171.1	ENST00000336811.10:ENST00000555835.3:ENST00000397995.2:ENST00000553909.1:ENST00000554073.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	139	2	6.1255	6.442835	6.76017	0.00258949	6.23263e-4	0.0321874	0.0101764
chr22	46290399	46290492	7743254	0	+	0.666667	(0.58,1]	chr22	811892	1	INTRON	INTRON	TTC38	ENSG00000075234.17	ENST00000381031.8:ENST00000451998.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	136	2	6.06394	6.442489999999999	6.82104	9.78215e-4	3.80904e-4	0.0187475	0.00721291
chr16	952942	953042	6531562	0	-	0.55	(0.523,0.58]	chr16	648704	3	SS3_PROX	SS3_PROX:INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1:ENST00000566609.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	145	2	5.94389	6.442475	6.94106	0.00183008	0.0010207	0.0266451	0.0143498
chr7	1938093	1938193	3529605	0	-	0.66	(0.58,1]	chr7	340962	8	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000450235.5:ENST00000437877.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	129	2	6.24245	6.442069999999999	6.64169	0.00334087	6.2385e-5	0.0368376	0.00192539
chr2	3269575	3269674	1080801	0	-	0.424242	(0.419,0.45]	chr2	117623	71	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	327	2	5.83767	6.442035000000001	7.0464	0.00281529	1.98255e-5	0.0336649	8.34698e-4
chr1	167760665	167760765	266813	0	+	0.41	(0.39,0.419]	chr1	31382	381	INTRON	INTRON	MPZL1	ENSG00000197965.12	ENST00000464954.1:ENST00000359523.7:ENST00000448405.5:ENST00000392121.7:ENST00000465787.5:ENST00000474859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	142	2	6.11256	6.44131	6.77006	0.00389104	0.00108325	0.0402085	0.0149525
chr6	41520190	41520290	3131930	0	-	0.56	(0.523,0.58]	chr6	305424	249	INTRON	INTRON	FOXP4-AS1	ENSG00000234753.6	ENST00000691406.1:ENST00000440194.1	lncRNA	lncRNA	lncRNA	lncRNA	0	134	2	6.38509	6.440835	6.49658	0.00424382	3.00426e-4	0.0422099	0.00607383
chr13	113028840	113028939	5655917	0	+	0.565657	(0.523,0.58]	chr13	555157	19	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486806.1:ENST00000473345.5	protein_coding	protein_coding	protein_coding	protein_coding	0	146	2	5.91127	6.4402	6.96913	0.0017332	0.00111349	0.0257605	0.0152496
chr13	113057099	113057199	5656208	0	+	0.54	(0.523,0.58]	chr13	555189	23	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	1	365	2	5.3668	6.4399750000000004	7.51315	6.43716e-4	9.60227e-6	0.0148938	4.98808e-4
chr10	100229127	100229227	4747973	0	-	0.5	(0.485,0.523]	chr10	453688	3	SS5_PROX	SS5_PROX:INTRON	CHUK	ENSG00000213341.11	ENST00000370397.8	protein_coding	protein_coding	protein_coding	protein_coding	0	138	2	5.96717	6.439665	6.91216	0.0108319	6.69654e-5	0.0707085	0.00203052
chr3	78822063	78822163	1835724	0	-	0.42	(0.419,0.45]	chr3	188602	748	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	0	137	2	6.3038	6.43965	6.5755	0.00990101	3.64701e-4	0.0671959	0.00699922
chr8	38197469	38197568	3801128	0	+	0.434343	(0.419,0.45]	chr8	365671	43	INTRON	INTRON	BAG4	ENSG00000156735.11	ENST00000521282.1:ENST00000432471.6:ENST00000287322.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	137	2	6.3038	6.43965	6.5755	0.00990101	3.64701e-4	0.0671959	0.00699922
chr16	83921459	83921558	6513139	0	+	0.494949	(0.485,0.523]	chr16	646141	61	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	134	2	6.19817	6.43947	6.68077	0.00723584	1.33825e-4	0.0565323	0.00338739
chr8	128040873	128040971	3920290	0	+	0.408163	(0.39,0.419]	chr8	374321	6	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	1	316	2	5.749	6.439344999999999	7.12969	0.00204089	2.26488e-5	0.0283511	9.21457e-4
chr3	65847616	65847716	1813951	0	-	0.38	(0.36,0.39]	chr3	187296	1271	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	136	2	6.37636	6.439085	6.50181	0.00749622	3.87323e-4	0.0576451	0.00729662
chr17	77306043	77306142	6803411	0	+	0.565657	(0.523,0.58]	chr17	686716	108	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	136	2	6.235	6.43906	6.64312	0.00323048	4.59688e-4	0.0362983	0.00821903
chr3	23842087	23842187	1431153	0	+	0.38	(0.36,0.39]	chr3	152792	302	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	322	2	4.88696	6.43886	7.99076	3.89396e-4	2.78875e-4	0.0113333	0.00577243
chr16	85401331	85401431	6517084	0	+	0.67	(0.58,1]	chr16	646391	420	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	140	2	5.93474	6.4388	6.94286	7.47593e-4	5.58693e-4	0.0161372	0.00944382
chr19	16368059	16368158	7343610	0	-	0.383838	(0.36,0.39]	chr19	760668	57	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	136	2	6.31302	6.43867	6.56432	0.00834137	3.27085e-4	0.0613342	0.00645438
chr17	2126889	2126989	6833218	0	-	0.48	(0.45,0.485]	chr17	691076	319	INTRON	INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11:ENST00000354901.8:ENST00000536871.6:ENST00000575454.1:ENST00000570874.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	136	2	6.11646	6.438655	6.76085	0.00956667	1.3016e-4	0.0658012	0.00332369
chr1	29237117	29237217	78379	0	+	0.57	(0.523,0.58]	chr1	8913	4	SS5_PROX	SS5_PROX:INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2	protein_coding	protein_coding	protein_coding	protein_coding	0	137	2	5.99431	6.438409999999999	6.88251	0.0104033	6.90788e-5	0.0686837	0.00208248
chr17	15467820	15467920	6860113	0	-	0.42	(0.419,0.45]	chr17	695071	3	INTRON	INTRON	TVP23C-CDRT4:CDRT4	ENSG00000259024.6:ENSG00000239704.11	ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	519	2	4.60292	6.43806	8.2732	0.00199119	2.74337e-6	0.0280206	2.06054e-4
chr9	88405907	88406007	4177837	0	+	0.54	(0.523,0.58]	chr9	397315	161	INTRON	INTRON	SPIN1	ENSG00000106723.17	ENST00000485804.5:ENST00000469017.6:ENST00000375859.4:ENST00000462844.5:ENST00000485565.6:ENST00000483785.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	142	2	6.00701	6.4377200000000006	6.86843	0.00210534	8.61362e-4	0.028892	0.0127848
chr1	89914915	89915015	181640	0	+	0.44	(0.419,0.45]	chr1	19585	679	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	0	137	2	6.25998	6.43757	6.61516	0.0106277	3.27987e-4	0.0698136	0.00646148
chr2	149788047	149788147	921827	0	+	0.44	(0.419,0.45]	chr2	102794	439	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	0	137	2	6.25998	6.43757	6.61516	0.0106277	3.27987e-4	0.0698136	0.00646148
chr21	38815081	38815181	7620699	0	+	0.37	(0.36,0.39]	chr21	796168	1	SS5_PROX	SS5_PROX:INTRON	ETS2	ENSG00000157557.13	ENST00000360214.8:ENST00000667466.1:ENST00000360938.8:ENST00000666778.1:ENST00000653642.1:ENST00000662305.1:ENST00000456966.1	protein_coding	protein_coding	protein_coding	protein_coding	0	169	2	5.53855	6.4373450000000005	7.33614	0.00432809	0.00135217	0.0389438	0.0224546
chr7	6702192	6702290	3542735	0	-	0.561224	(0.523,0.58]	chr7	342318	14	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	2	761	2	6.20771	6.437099999999999	6.66649	1.10259e-4	5.84317e-7	0.00586479	7.34534e-5
chr7	2041917	2042017	3530651	0	-	0.57	(0.523,0.58]	chr7	340995	269	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	133	2	6.28963	6.437049999999999	6.58447	0.00618741	1.68436e-4	0.0519442	0.00400681
chr10	87320943	87321043	4724362	0	-	0.4	(0.39,0.419]	chr10	450905	2	SS3_PROX	SS3_PROX:INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6:ENST00000456104.5:ENST00000433530.7:ENST00000688257.1:ENST00000433920.5:ENST00000687925.1:ENST00000666515.2:ENST00000688926.1:ENST00000447424.6:ENST00000690598.1:ENST00000663113.1:ENST00000667520.2:ENST00000693252.1:ENST00000687827.1:ENST00000687141.1:ENST00000654503.2:ENST00000655272.2:ENST00000668676.1:ENST00000653080.1:ENST00000690287.1:ENST00000413722.6:ENST00000653238.1:ENST00000660454.1:ENST00000688790.1:ENST00000660726.2:ENST00000417860.7:ENST00000663683.1:ENST00000686862.1:ENST00000413961.5	lncRNA	lncRNA	lncRNA	lncRNA	0	136	2	6.41573	6.436865	6.458	0.00718148	4.39359e-4	0.056408	0.00798319
chr13	113350548	113350648	5753438	0	-	0.64	(0.58,1]	chr13	564103	3	SS5_PROX	SS5_PROX:INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	1	337	2	5.52522	6.436465	7.34771	2.10401e-4	5.73693e-6	0.00819077	3.48335e-4
chr18	74514313	74514407	7088606	0	+	0.457447	(0.45,0.485]	chr18	722320	2	INTRON	INTRON	CNDP2	ENSG00000133313.15	ENST00000579847.5:ENST00000324262.9:ENST00000324301.12:ENST00000584581.5:ENST00000579624.1:ENST00000583695.1:ENST00000581600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	134	2	6.34655	6.436045	6.52554	0.00642055	2.5568e-4	0.0529785	0.00541562
chr13	98415219	98415318	5636421	0	+	0.383838	(0.36,0.39]	chr13	553617	28	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000457029.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	153	2	5.80333	6.435919999999999	7.06851	0.00231859	0.00221433	0.0295806	0.0255753
chr12	79890919	79891019	5463327	0	-	0.44	(0.419,0.45]	chr12	537312	176	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546369.5:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	0	137	2	6.40495	6.435915	6.46688	0.00757951	5.72149e-4	0.0579104	0.00960229
chr10	18565362	18565461	4642382	0	-	0.424242	(0.419,0.45]	chr10	443321	130	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	138	2	6.31147	6.4358249999999995	6.56018	0.00648928	7.29222e-4	0.0532359	0.0113963
chr17	4341465	4341564	6842202	0	-	0.464646	(0.45,0.485]	chr17	692473	58	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1:ENST00000574059.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	134	2	6.38848	6.43539	6.4823	0.0059625	2.88849e-4	0.0506812	0.00590733
chr5	80988016	80988116	2468514	0	+	0.49	(0.485,0.523]	chr5	246550	266	INTRON	INTRON	RASGRF2	ENSG00000113319.13	ENST00000265080.9:ENST00000503795.1:ENST00000638442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	133	2	6.26763	6.434514999999999	6.6014	0.00639185	1.68998e-4	0.0529032	0.0040111
chr17	81207837	81207935	6983387	0	-	0.530612	(0.523,0.58]	chr17	713387	2	INTRON	INTRON	CEP131	ENSG00000141577.14	ENST00000374782.7:ENST00000269392.8:ENST00000450824.7:ENST00000575907.5	protein_coding	protein_coding	protein_coding	protein_coding	0	136	2	6.2084	6.43442	6.66044	0.00312705	4.95211e-4	0.0356998	0.00865935
chr20	62337386	62337486	7584284	0	-	0.63	(0.58,1]	chr20	792665	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LAMA5	ENSG00000130702.15	ENST00000252999.7:ENST00000474128.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	138	2	5.76934	6.4342	7.09906	0.00849371	1.35452e-5	0.0617717	6.38288e-4
chr11	57303479	57303577	5038251	0	-	0.612245	(0.58,1]	chr11	488042	1	INTRON	INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	128	2	6.35646	6.43414	6.51182	0.00264106	9.48877e-5	0.0325876	0.00262417
chr11	18011222	18011320	5015371	0	-	0.438776	(0.419,0.45]	chr11	484704	7	INTRON	INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528200.5:ENST00000532265.5:ENST00000529728.5:ENST00000530613.5:ENST00000532389.5:ENST00000530925.5:ENST00000533328.5:ENST00000532212.5:ENST00000524716.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	139	2	6.23716	6.43393	6.6307	0.00576404	8.82327e-4	0.0500197	0.0129974
chr22	24092741	24092840	7695286	0	+	0.464646	(0.45,0.485]	chr22	805504	5	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6	protein_coding	protein_coding	protein_coding	protein_coding	1	313	2	5.90687	6.433814999999999	6.96076	0.00209187	9.56407e-6	0.0287557	4.97907e-4
chr22	31733894	31733993	7789293	0	-	0.393939	(0.39,0.419]	chr22	817292	79	INTRON	INTRON	PRR14L	ENSG00000183530.14	ENST00000327423.11:ENST00000461722.1:ENST00000412743.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	139	2	6.19386	6.433225	6.67259	0.00461678	8.79539e-4	0.0442497	0.0129939
chr2	87529115	87529214	847941	0	+	0.515152	(0.485,0.523]	chr2	95749	77	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000642451.1:ENST00000644478.1:ENST00000409139.6:ENST00000644125.1:ENST00000643743.1:ENST00000643276.1:ENST00000409898.2:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000646636.1:ENST00000629257.1:ENST00000409054.2	lncRNA	lncRNA	lncRNA	lncRNA	1	297	2	5.75151	6.433175	7.11484	0.00129186	1.29028e-5	0.021949	6.14919e-4
chr3	71413059	71413159	1829579	0	-	0.5	(0.485,0.523]	chr3	188242	524	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000649145.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	289	2	5.37706	6.433035	7.48901	6.11769e-4	4.25218e-5	0.0145086	0.0014604
chr2	232797418	232797518	1056321	0	+	0.41	(0.39,0.419]	chr2	114903	8	INTRON	INTRON	GIGYF2	ENSG00000204120.16	ENST00000629305.2:ENST00000409480.5:ENST00000373563.9:ENST00000409547.5:ENST00000423659.5:ENST00000409196.7:ENST00000409451.7:ENST00000440945.5:ENST00000677591.1:ENST00000678230.1:ENST00000678339.1:ENST00000677450.1:ENST00000678466.1:ENST00000678885.1:ENST00000676848.1	protein_coding	protein_coding	protein_coding	protein_coding	0	136	2	6.39063	6.43269	6.47475	0.00649594	5.25726e-4	0.0532359	0.00903907
chr19	34503949	34504048	7244308	0	+	0.575758	(0.523,0.58]	chr19	741946	38	UTR3	UTR3:EXON_MRNA	WTIP	ENSG00000142279.13	ENST00000590071.7	protein_coding	protein_coding	protein_coding	protein_coding	0	137	2	6.15367	6.432415	6.71116	0.00284169	5.76607e-4	0.033773	0.00963379
chr7	47380712	47380812	3587599	0	-	0.52	(0.485,0.523]	chr7	346036	107	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	289	2	5.35656	6.43241	7.50826	5.88357e-4	4.53476e-5	0.0142143	0.00153269
chr10	35335727	35335827	4673269	0	-	0.53	(0.523,0.58]	chr10	445749	4	SS5_PROX	SS5_PROX:INTRON	CCNY-AS1	ENSG00000271335.6	ENST00000659251.1:ENST00000605499.1	lncRNA	lncRNA	lncRNA	lncRNA	1	292	2	5.16888	6.432385	7.69589	4.0569e-4	7.81032e-5	0.0115298	0.00227541
chr6	24711173	24711271	3111319	0	-	0.326531	(0.29,0.33]	chr6	301651	19	INTRON	INTRON	C6orf62	ENSG00000112308.13	ENST00000378119.9:ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	0	134	2	6.30299	6.4318100000000005	6.56063	0.00330556	4.27696e-4	0.0368376	0.00780759
chr1	154607791	154607891	594191	0	-	0.5	(0.485,0.523]	chr1	69507	4	SS5_PROX	SS5_PROX:INTRON	ADAR	ENSG00000160710.18	ENST00000681056.1:ENST00000680270.1:ENST00000679375.1:ENST00000679899.1:ENST00000681901.1:ENST00000648714.2:ENST00000681235.1:ENST00000647682.2:ENST00000368474.9:ENST00000680305.1:ENST00000368471.8:ENST00000648231.2:ENST00000649022.2:ENST00000681786.1:ENST00000679465.1:ENST00000679805.1:ENST00000649408.2:ENST00000649042.1:ENST00000649724.1:ENST00000648311.1:ENST00000649749.1:ENST00000649021.1:ENST00000529168.2:ENST00000681683.1:ENST00000648871.1:ENST00000463920.5:ENST00000680472.1:ENST00000471068.2:ENST00000494866.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	290	2	5.54955	6.431785	7.31402	8.70042e-4	2.46467e-5	0.0175759	9.7833e-4
chr21	5103772	5103872	7635224	0	-	0.5	(0.485,0.523]	chr21	798621	237	INTRON	INTRON	ENSG00000280071	ENSG00000280071.4	ENST00000624810.3:ENST00000625036.3	protein_coding	protein_coding	protein_coding	protein_coding	0	134	2	6.3084	6.431065	6.55373	0.00378829	3.92049e-4	0.0396337	0.00735595
chr9	114203802	114203901	4226190	0	+	0.494949	(0.485,0.523]	chr9	400776	74	INTRON	INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8:ENST00000451716.5:ENST00000494090.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	407	2	5.46301	6.43101	7.39901	7.33641e-4	7.1935e-6	0.0159757	4.08425e-4
chr17	81138998	81139098	6982892	0	-	0.56	(0.523,0.58]	chr17	713268	41	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	297	2	5.0452	6.43092	7.81664	3.16525e-4	1.14382e-4	0.0101066	0.00303044
chr10	14558300	14558400	4633240	0	-	0.41	(0.39,0.419]	chr10	442809	15	INTRON	INTRON	FAM107B	ENSG00000065809.14	ENST00000181796.7:ENST00000622567.4:ENST00000468747.5:ENST00000378467.8:ENST00000487335.5:ENST00000378465.7:ENST00000378458.6:ENST00000378462.5:ENST00000479731.5:ENST00000468492.5:ENST00000452706.6:ENST00000488576.5:ENST00000442012.5:ENST00000482277.5:ENST00000472095.5:ENST00000471815.5:ENST00000464952.5:ENST00000495292.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	136	2	6.19949	6.430875	6.66226	0.0103045	2.52597e-4	0.0684871	0.00536182
chr19	6719995	6720087	7322987	0	-	0.478261	(0.45,0.485]	chr19	756567	2	SS5_PROX	SS5_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695652.1:ENST00000594936.2:ENST00000695693.1:ENST00000600744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	134	2	6.21295	6.43047	6.64799	0.00810629	1.80357e-4	0.0602166	0.00419938
chr2	240624785	240624884	1075191	0	+	0.575758	(0.523,0.58]	chr2	116654	54	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	0	146	2	5.8779	6.430425	6.98295	0.00168728	0.00121652	0.0254298	0.0162693
chr1	48227757	48227856	120977	0	+	0.50505	(0.485,0.523]	chr1	15165	26	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	289	2	5.50367	6.430405	7.35714	7.98038e-4	2.85144e-5	0.0167692	0.00108419
chr7	4770843	4770943	3310237	0	+	0.46	(0.45,0.485]	chr7	320850	85	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	5	602	2	4.26314	6.430205	8.59727	8.54028e-5	8.01754e-5	0.00497735	0.00243453
chr19	4012028	4012126	7192342	0	+	0.591837	(0.58,1]	chr19	732461	39	INTRON	INTRON	PIAS4	ENSG00000105229.7	ENST00000262971.3:ENST00000599999.5:ENST00000600566.5:ENST00000593518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	128	2	6.41826	6.429925	6.44159	0.00221069	1.27804e-4	0.0295736	0.00328053
chr5	60449006	60449106	2678646	0	-	0.52	(0.485,0.523]	chr5	264436	4	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000502484.6:ENST00000509355.5:ENST00000506510.6:ENST00000511382.1:ENST00000505507.6:ENST00000515835.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	133	2	6.38149	6.429545	6.4776	0.00436205	3.18797e-4	0.0427656	0.00634142
chr10	18569159	18569259	4642420	0	-	0.42	(0.419,0.45]	chr10	443321	168	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	136	2	6.38764	6.429465	6.47129	0.00863623	4.80774e-4	0.0623824	0.00851282
chr2	3287516	3287616	1080982	0	-	0.5	(0.485,0.523]	chr2	117633	48	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	140	2	5.8513	6.42945	7.0076	0.0131886	5.00839e-5	0.0785398	0.00164756
chr19	3528610	3528709	7191584	0	+	0.535354	(0.523,0.58]	chr19	732249	4	INTRON	INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	136	2	6.18129	6.42942	6.67755	0.00302793	5.34061e-4	0.0350226	0.0091384
chr2	120278014	120278114	887952	0	+	0.49	(0.485,0.523]	chr2	100428	239	INTRON	INTRON	RALB	ENSG00000144118.14	ENST00000447591.5:ENST00000420510.5:ENST00000431732.5:ENST00000272519.10:ENST00000631312.2:ENST00000470417.1:ENST00000412383.5:ENST00000449649.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	312	2	5.98982	6.42934	6.86886	0.00208565	5.94779e-6	0.0287557	3.57135e-4
chr11	96166106	96166206	5111797	0	-	0.49	(0.485,0.523]	chr11	496566	722	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	0	175	2	5.39869	6.4291599999999995	7.45963	0.00421243	6.49227e-4	0.0380601	0.0149631
chr11	902047	902147	4970036	0	-	0.51	(0.485,0.523]	chr11	480935	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CHID1	ENSG00000177830.18	ENST00000323578.13:ENST00000449825.5:ENST00000454838.6:ENST00000429789.6:ENST00000528581.5:ENST00000436108.6:ENST00000526714.5:ENST00000524832.5:ENST00000531859.5:ENST00000534254.5:ENST00000528426.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	135	2	6.04835	6.42915	6.80995	0.00941539	9.11162e-5	0.0653252	0.00255001
chr17	7112829	7112927	6847762	0	-	0.622449	(0.58,1]	chr17	693423	36	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	1063	2	5.88383	6.42908	6.97433	6.15286e-6	2.53541e-7	0.00151106	4.22712e-5
chr21	43751045	43751142	7624127	0	+	0.56701	(0.523,0.58]	chr21	796773	1	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000498040.5:ENST00000481512.5:ENST00000490666.5:ENST00000467908.1:ENST00000343528.10:ENST00000398078.7:ENST00000468392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	133	2	6.36114	6.42886	6.49658	0.00424382	3.21725e-4	0.0422099	0.0063695
chr17	77216548	77216564	6803140	0	+	0.4375	(0.419,0.45]	chr17	686685	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	0	140	2	5.9918	6.428855	6.86591	0.0162379	1.65832e-4	0.0873195	0.00396002
chr17	72555130	72555229	6963862	0	-	0.515152	(0.485,0.523]	chr17	710389	207	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	142	2	5.78967	6.42878	7.06789	0.0146211	4.163e-5	0.0826064	0.00144246
chr1	96761346	96761446	190746	0	+	0.36	(0.33,0.36]	chr1	20672	95	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	134	2	6.34434	6.4284	6.51246	0.00669111	3.21298e-4	0.0541583	0.0063695
chr3	37863377	37863477	1443277	0	+	0.52	(0.485,0.523]	chr3	153956	7	INTRON	INTRON	CTDSPL	ENSG00000144677.15	ENST00000273179.10:ENST00000443503.6:ENST00000435525.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	136	2	6.1777	6.42784	6.67798	0.00300122	5.64449e-4	0.0348875	0.00950156
chr3	33645902	33646001	1735238	0	-	0.424242	(0.419,0.45]	chr3	179649	5	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000496954.2:ENST00000482896.5:ENST00000498331.1:ENST00000486796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	136	2	6.25998	6.427725	6.59547	0.0106277	3.45753e-4	0.0698136	0.00672667
chr7	55123997	55124097	3372597	0	+	0.36	(0.33,0.36]	chr7	325297	47	INTRON	INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000450046.1	protein_coding	protein_coding	protein_coding	protein_coding	1	298	2	5.28164	6.4267	7.57176	6.78512e-4	7.87427e-5	0.0153241	0.0022885
chr1	949959	950054	379860	0	-	0.494737	(0.485,0.523]	chr1	42700	10	INTRON	INTRON	NOC2L	ENSG00000188976.11	ENST00000327044.7:ENST00000477976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	147	2	5.65791	6.42645	7.19499	0.0181582	2.80995e-5	0.0921579	0.00107401
chr16	78968215	78968315	6504101	0	+	0.46	(0.45,0.485]	chr16	645717	1879	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	154	2	5.54186	6.42633	7.3108	0.0243502	2.51511e-5	0.106588	9.92488e-4
chr16	85451809	85451909	6517589	0	+	0.53	(0.523,0.58]	chr16	646391	925	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	144	2	5.91127	6.426165	6.94106	0.00183008	0.00111349	0.0266451	0.0152496
chr7	17861329	17861428	3546816	0	-	0.464646	(0.45,0.485]	chr7	342732	100	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	300	2	5.06699	6.425935	7.78488	4.20312e-4	1.28318e-4	0.011772	0.00328964
chr1	228156348	228156447	358150	0	+	0.484848	(0.45,0.485]	chr1	40434	60	INTRON	INTRON	GJC2	ENSG00000198835.4	ENST00000366714.3	protein_coding	protein_coding	protein_coding	protein_coding	0	135	2	6.26988	6.425715	6.58155	0.00421879	5.20615e-4	0.0421633	0.00899129
chr20	63598360	63598457	7586233	0	-	0.463918	(0.45,0.485]	chr20	793064	1	INTRON	INTRON	GMEB2	ENSG00000101216.11	ENST00000266068.5:ENST00000370069.5:ENST00000370077.2	protein_coding	protein_coding	protein_coding	protein_coding	0	135	2	6.26988	6.425715	6.58155	0.00421879	5.20615e-4	0.0421633	0.00899129
chr2	3503387	3503486	1081959	0	-	0.494949	(0.485,0.523]	chr2	117683	20	INTRON	INTRON	ADI1	ENSG00000182551.14	ENST00000327435.11:ENST00000382093.5	protein_coding	protein_coding	protein_coding	protein_coding	0	144	2	5.7253	6.425535	7.12577	0.0162644	3.48268e-5	0.0873195	0.00126017
chr2	235504640	235504740	1062642	0	+	0.55	(0.523,0.58]	chr2	115651	94	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	134	2	6.26113	6.425515	6.5899	0.00356891	4.27166e-4	0.0383188	0.00779962
chr17	72539166	72539266	6963702	0	-	0.58	(0.523,0.58]	chr17	710389	47	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	2	383	2	4.98813	6.425185	7.86224	2.88079e-4	3.20128e-5	0.00964028	0.00118163
chr11	70792246	70792346	5062204	0	-	0.54	(0.523,0.58]	chr11	492701	744	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	786	2	6.3589	6.42513	6.49136	6.00425e-5	1.6491e-6	0.00429933	1.46076e-4
chr17	80691357	80691457	6810369	0	+	0.5	(0.485,0.523]	chr17	687822	472	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	133	2	6.14994	6.424945	6.69995	0.00788098	1.26446e-4	0.059464500000000003	0.00325863
chr7	76997523	76997622	3398775	0	+	0.59596	(0.58,1]	chr7	328286	68	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	1	291	2	4.84837	6.424935	8.0015	1.2454e-4	6.45572e-5	0.00446482	0.00322977
chr20	8463045	8463145	7429898	0	+	0.38	(0.36,0.39]	chr20	773698	910	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	429	2	4.43956	6.4245	8.40944	2.71285e-4	1.71789e-4	0.00733109	0.00564793
chr1	6030824	6030922	6744	0	+	0.367347	(0.36,0.39]	chr1	1420	30	INTRON	INTRON	KCNAB2	ENSG00000069424.16	ENST00000655548.1:ENST00000378111.6:ENST00000378097.6:ENST00000666163.1:ENST00000671676.1:ENST00000658883.1:ENST00000658691.1:ENST00000435937.6:ENST00000445501.6:ENST00000478098.5:ENST00000653262.1:ENST00000668706.1:ENST00000389632.9:ENST00000654144.1:ENST00000341524.6:ENST00000462676.3:ENST00000428161.6:ENST00000352527.6:ENST00000663169.1:ENST00000653635.1:ENST00000661248.1:ENST00000656198.1:ENST00000602612.5:ENST00000481789.2:ENST00000656746.1:ENST00000665338.1:ENST00000666299.1:ENST00000652845.1:ENST00000655703.1:ENST00000669250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	136	2	6.12911	6.42399	6.71887	0.0113159	2.14172e-4	0.0722887	0.00475596
chr4	153487685	153487785	2151095	0	+	0.57	(0.523,0.58]	chr4	217962	134	INTRON	INTRON	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000445960.5:ENST00000409959.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	286	2	5.4285	6.423785	7.41907	7.11773e-4	3.45766e-5	0.0157569	0.00125448
chr3	136498228	136498327	1922797	0	-	0.383838	(0.36,0.39]	chr3	195570	205	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2:ENST00000487065.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	136	2	6.29617	6.423705	6.55124	0.0055566	6.68957e-4	0.049265	0.0107572
chr5	138347354	138347453	2543271	0	+	0.50505	(0.485,0.523]	chr5	252559	5	UTR3	UTR3:EXON_MRNA	FAM53C	ENSG00000120709.11	ENST00000239906.10	protein_coding	protein_coding	protein_coding	protein_coding	1	351	2	5.16384	6.423615	7.68339	9.67947e-4	5.97548e-6	0.0186816	3.5765e-4
chr1	5879732	5879825	386623	0	-	0.526882	(0.523,0.58]	chr1	44406	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NPHP4	ENSG00000131697.18	ENST00000378156.9:ENST00000478423.6:ENST00000489180.6:ENST00000378169.7:ENST00000470763.1:ENST00000622020.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	133	2	6.312	6.42332	6.53464	0.00395533	3.69994e-4	0.0406092	0.00704866
chr4	159104531	159104631	2157988	0	+	0.54	(0.523,0.58]	chr4	218657	3	SS5_PROX	SS5_PROX:INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	477	2	4.6936	6.423005	8.15241	0.0010207	1.1847e-6	0.0191807	1.16684e-4
chr14	94308654	94308750	6046259	0	-	0.46875	(0.45,0.485]	chr14	593049	21	INTRON	INTRON	SERPINA6	ENSG00000170099.6	ENST00000341584.4:ENST00000555056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	144	2	5.92705	6.422755	6.91846	0.00226513	0.00129636	0.0300628	0.0170746
chr9	87537371	87537471	4175823	0	+	0.46	(0.45,0.485]	chr9	397141	120	INTRON	INTRON	DAPK1	ENSG00000196730.13	ENST00000358077.9:ENST00000469640.6:ENST00000472284.5:ENST00000469067.5:ENST00000408954.8:ENST00000622514.4:ENST00000496522.5:ENST00000472344.1:ENST00000491893.5:ENST00000489291.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	133	2	6.23609	6.422205	6.60832	0.00778782	2.02062e-4	0.0590114	0.00457229
chr2	239159743	239159842	1390294	0	-	0.494949	(0.485,0.523]	chr2	148698	26	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	132	2	6.40505	6.421514999999999	6.43798	0.00469187	2.98099e-4	0.0447158	0.00604717
chr8	726459	726558	3932995	0	-	0.484848	(0.45,0.485]	chr8	376060	101	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	354	2	4.86997	6.421495	7.97302	0.00198495	3.15599e-6	0.0279914	2.27679e-4
chr3	62178023	62178122	1492786	0	+	0.50505	(0.485,0.523]	chr3	160128	95	INTRON	INTRON	PTPRG	ENSG00000144724.20	ENST00000474889.6:ENST00000295874.14	protein_coding	protein_coding	protein_coding	protein_coding	0	141	2	5.78967	6.42136	7.05305	0.0146211	4.35721e-5	0.0826064	0.00149008
chr2	210571801	210571900	1010225	0	+	0.414141	(0.39,0.419]	chr2	111042	146	INTRON	INTRON	CPS1	ENSG00000021826.18	ENST00000430249.7:ENST00000673630.1:ENST00000673510.1:ENST00000673711.1:ENST00000233072.10	protein_coding	protein_coding	protein_coding	protein_coding	0	137	2	6.21998	6.420624999999999	6.62127	0.00504817	8.22163e-4	0.0465263	0.0124043
chr1	183553399	183553498	301984	0	+	0.535354	(0.523,0.58]	chr1	34394	3	UTR3	UTR3:EXON_MRNA:INTRON	SMG7	ENSG00000116698.22	ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000347615.6:ENST00000507469.5:ENST00000515829.6:ENST00000495321.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	133	2	6.09961	6.42039	6.74117	0.00866655	1.05811e-4	0.0623824	0.00286061
chr20	50175387	50175485	7493446	0	+	0.44898	(0.419,0.45]	chr20	781403	17	INTRON	INTRON	LINC01273	ENSG00000231742.6	ENST00000670659.1:ENST00000668708.1:ENST00000659473.1:ENST00000411453.3:ENST00000661469.1	lncRNA	lncRNA	lncRNA	lncRNA	0	137	2	6.26235	6.42024	6.57813	0.00629696	8.27298e-4	0.0523832	0.0124589
chr10	18564362	18564462	4642372	0	-	0.43	(0.419,0.45]	chr10	443321	120	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	139	2	6.1588	6.42011	6.68142	0.00529005	0.00107628	0.047841	0.0148869
chr1	27345149	27345241	71357	0	+	0.597826	(0.58,1]	chr1	8039	4	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SYTL1	ENSG00000142765.18	ENST00000618673.4:ENST00000318074.9:ENST00000616558.5:ENST00000483926.5:ENST00000473280.1:ENST00000543823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	128	2	6.3182	6.42009	6.52198	0.00186556	1.74994e-4	0.0269723	0.00410754
chr22	25488123	25488223	7701425	0	+	0.42	(0.419,0.45]	chr22	805972	266	INTRON	INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000686640.1:ENST00000509460.3:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	145	2	5.95751	6.420085	6.8826599999999996	0.00374639	0.0017735	0.0393941	0.02121
chr13	94144489	94144589	5626959	0	+	0.41	(0.39,0.419]	chr13	553070	1162	INTRON	INTRON	GPC6	ENSG00000183098.11	ENST00000377047.9	protein_coding	protein_coding	protein_coding	protein_coding	0	140	2	5.91692	6.41992	6.92292	0.0162442	1.22286e-4	0.0873195	0.00319203
chr4	118804846	118804945	2315291	0	-	0.383838	(0.36,0.39]	chr4	232610	67	INTRON	INTRON	SEC24D	ENSG00000150961.15	ENST00000280551.11:ENST00000514561.5:ENST00000419654.6:ENST00000509818.5:ENST00000506622.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	135	2	6.34447	6.4198699999999995	6.49527	0.00611969	5.89187e-4	0.0517362	0.00981079
chr14	68898783	68898881	5999327	0	-	0.591837	(0.58,1]	chr14	588704	47	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	911	2	5.96274	6.419775	6.87681	2.3982e-5	9.1359e-8	0.00282051	2.21719e-5
chr3	129395431	129395526	1911572	0	-	0.431579	(0.419,0.45]	chr3	194158	13	INTRON	INTRON	RPL32P3	ENSG00000251474.7	ENST00000510078.5:ENST00000507287.5:ENST00000687239.1:ENST00000514355.5:ENST00000507238.5:ENST00000515866.5:ENST00000499631.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	135	2	6.3038	6.4192599999999995	6.53472	0.00990101	4.06527e-4	0.0671959	0.00755833
chr19	4334444	4334544	7312815	0	-	0.54	(0.523,0.58]	chr19	754659	4	SS3_PROX	SS3_PROX:INTRON	STAP2	ENSG00000178078.12	ENST00000594605.6:ENST00000600324.5:ENST00000599736.5:ENST00000601482.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	151	2	5.73609	6.41894	7.10179	0.0017613	0.00133774	0.0223452	0.0211077
chr20	62337287	62337386	7584283	0	-	0.545455	(0.523,0.58]	chr20	792665	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LAMA5	ENSG00000130702.15	ENST00000252999.7:ENST00000474128.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	136	2	5.93864	6.41894	6.89924	0.0114442	6.56505e-5	0.0723462	0.00199995
chr12	46629995	46630095	5219494	0	+	0.51	(0.485,0.523]	chr12	506666	582	INTRON	INTRON	ENSG00000257261:ENSG00000272369	ENSG00000257261.7:ENSG00000272369.1	ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2:ENST00000607353.1	lncRNA	lncRNA	lncRNA	lncRNA	0	137	2	6.09319	6.41882	6.74445	0.00264613	7.11715e-4	0.032596	0.0112082
chr3	171700126	171700226	1957439	0	-	0.51	(0.485,0.523]	chr3	199005	3	SS3_PROX	SS3_PROX:INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9:ENST00000481505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	353	2	5.23327	6.41872	7.60417	8.40207e-4	7.70941e-6	0.0172456	4.27315e-4
chr13	20497293	20497393	5662813	0	-	0.47	(0.45,0.485]	chr13	556208	74	INTRON	INTRON	CRYL1	ENSG00000165475.15	ENST00000643035.1:ENST00000644593.1:ENST00000298248.12:ENST00000644872.1:ENST00000382812.5:ENST00000643750.1:ENST00000644153.1:ENST00000643887.1:ENST00000644167.1:ENST00000646414.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	133	2	6.36817	6.4185	6.46883	0.00516809	3.97249e-4	0.0472296	0.00741985
chr16	1727351	1727450	6371209	0	+	0.474747	(0.45,0.485]	chr16	628837	23	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000685565.1:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	133	2	6.36817	6.4185	6.46883	0.00516809	3.97249e-4	0.0472296	0.00741985
chr7	1937695	1937795	3529601	0	-	0.67	(0.58,1]	chr7	340962	4	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000450235.5:ENST00000437877.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	127	2	6.1942	6.417945	6.64169	0.00368616	6.2385e-5	0.0389784	0.00192539
chr18	74623082	74623182	7089502	0	+	0.5	(0.485,0.523]	chr18	722412	248	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000582337.5	protein_coding	protein_coding	protein_coding	protein_coding	0	132	2	6.17426	6.4178	6.66134	0.00754939	1.41724e-4	0.0578091	0.00352935
chr2	55022592	55022691	1148253	0	-	0.484848	(0.45,0.485]	chr2	125466	82	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	1	291	2	5.39446	6.417669999999999	7.44088	8.30731e-4	4.75476e-5	0.0171232	0.00159072
chr19	4492913	4493009	7193765	0	+	0.510417	(0.485,0.523]	chr19	732770	7	INTRON	INTRON	HDGFL2	ENSG00000167674.15	ENST00000616600.5:ENST00000621835.4:ENST00000589486.5:ENST00000615225.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	143	2	5.90769	6.417475	6.92726	0.00186327	0.0011708	0.0269723	0.0157899
chr3	58010055	58010155	1483054	0	+	0.52	(0.485,0.523]	chr3	159572	8	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	803	2	6.23978	6.417225	6.59467	4.75307e-5	2.61134e-6	0.00379612	1.99489e-4
chr1	2182904	2183002	4465	0	+	0.632653	(0.58,1]	chr1	1030	6	INTRON	INTRON	PRKCZ	ENSG00000067606.17	ENST00000378567.8:ENST00000400921.6:ENST00000461106.6:ENST00000479263.5:ENST00000478770.6:ENST00000505322.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	132	2	6.0945	6.4169149999999995	6.73933	0.00116939	3.47472e-4	0.0206836	0.00673552
chr10	99405555	99405655	4744806	0	-	0.28	[0,0.29]	chr10	453254	4	SS5_PROX	SS5_PROX:INTRON	GOT1	ENSG00000120053.12	ENST00000370508.7	protein_coding	protein_coding	protein_coding	protein_coding	2	371	2	4.83175	6.416725	8.0017	7.7107e-5	4.36873e-5	0.00490778	0.00149371
chr2	131289329	131289429	892972	0	+	0.4	(0.39,0.419]	chr2	101034	1396	INTRON	INTRON	PLEKHB2	ENSG00000115762.17	ENST00000404460.5	protein_coding	protein_coding	protein_coding	protein_coding	0	135	2	6.31995	6.416375	6.5128	0.00608676	6.3352e-4	0.0515813	0.0102998
chr1	61134127	61134227	146623	0	+	0.36	(0.33,0.36]	chr1	17147	12	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	299	2	5.13048	6.416215	7.70195	5.25124e-4	1.23114e-4	0.0133335	0.00321163
chr20	61971286	61971386	7582827	0	-	0.53	(0.523,0.58]	chr20	792262	171	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000474089.5	protein_coding	protein_coding	protein_coding	protein_coding	0	131	2	6.28963	6.416055	6.54248	0.00618741	1.90498e-4	0.0519442	0.0043642
chr8	128058312	128058412	3920470	0	+	0.37	(0.36,0.39]	chr8	374338	82	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1:ENST00000660781.1:ENST00000660912.1:ENST00000650930.1:ENST00000663715.1:ENST00000652883.1:ENST00000657844.1:ENST00000660659.1:ENST00000661391.1:ENST00000660146.1:ENST00000671587.1:ENST00000658018.1:ENST00000666878.1:ENST00000652993.1:ENST00000658305.1:ENST00000656077.1:ENST00000666039.1:ENST00000668619.1:ENST00000668479.1:ENST00000660069.1:ENST00000658158.1:ENST00000652728.1:ENST00000653608.1:ENST00000669509.1:ENST00000522414.2:ENST00000670535.1:ENST00000670009.1:ENST00000668215.1:ENST00000668351.1:ENST00000657682.1:ENST00000657945.1:ENST00000658065.1:ENST00000655148.1:ENST00000666223.1:ENST00000666105.1:ENST00000668480.1	lncRNA	lncRNA	lncRNA	lncRNA	1	303	2	5.54976	6.415900000000001	7.28204	0.0014952	4.0788e-5	0.0238195	0.0014165
chr11	70787050	70787150	5062152	0	-	0.55	(0.523,0.58]	chr11	492701	692	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	135	2	6.15367	6.41561	6.67755	0.00302793	5.76607e-4	0.0350226	0.00963379
chr9	124334202	124334302	4236273	0	+	0.53	(0.523,0.58]	chr9	402147	64	INTRON	INTRON	NEK6	ENSG00000119408.17	ENST00000373603.5:ENST00000540326.5:ENST00000320246.10:ENST00000373600.7:ENST00000545174.5:ENST00000444973.5:ENST00000454453.5:ENST00000425237.5:ENST00000546191.5:ENST00000422297.5:ENST00000539416.5:ENST00000394199.6	protein_coding	protein_coding	protein_coding	protein_coding	0	135	2	6.15367	6.41561	6.67755	0.00302793	5.76607e-4	0.0350226	0.00963379
chr7	32818385	32818481	3342036	0	+	0.364583	(0.36,0.39]	chr7	323427	7	INTRON	INTRON	DPY19L1P2	ENSG00000231952.3	ENST00000426647.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	134	2	6.41401	6.4155549999999995	6.4171	0.00699528	4.90006e-4	0.0555241	0.00861813
chr2	172024762	172024862	954851	0	+	0.36	(0.33,0.36]	chr2	104934	25	INTRON	INTRON	METAP1D	ENSG00000172878.14	ENST00000493035.5:ENST00000315796.5:ENST00000493742.1:ENST00000491440.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	138	2	5.92813	6.41508	6.90203	0.0135535	1.07164e-4	0.0793558	0.00288103
chr4	105443598	105443698	2298195	0	-	0.43	(0.419,0.45]	chr4	231299	52	INTRON	INTRON	PPA2	ENSG00000138777.20	ENST00000341695.10:ENST00000348706.9:ENST00000509031.5:ENST00000351450.10:ENST00000354147.7:ENST00000432483.6:ENST00000515567.5:ENST00000503171.5:ENST00000510015.5:ENST00000509426.5:ENST00000508518.5:ENST00000514209.5:ENST00000506815.5:ENST00000457404.6:ENST00000502833.5:ENST00000504028.5:ENST00000502596.5:ENST00000513649.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	135	2	6.38214	6.414809999999999	6.44748	0.00782663	6.07209e-4	0.0592048	0.0100293
chr17	72920747	72920847	6967496	0	-	0.5	(0.485,0.523]	chr17	710518	706	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	131	2	6.31214	6.41478	6.51742	0.00589975	2.15808e-4	0.0506158	0.00477041
chr7	139703044	139703144	3723176	0	-	0.32	(0.29,0.33]	chr7	357498	710	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	131	2	6.27451	6.41456	6.55461	0.00564709	2.0962e-4	0.0495171	0.00467341
chrX	2225427	2225527	7966092	0	-	0.3	(0.29,0.33]	chrX	834328	38	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11	protein_coding	protein_coding	protein_coding	protein_coding	0	131	2	6.27451	6.41456	6.55461	0.00564709	2.0962e-4	0.0495171	0.00467341
chrX	44898685	44898785	7871928	0	+	0.52	(0.485,0.523]	chrX	825082	243	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	131	2	6.29006	6.41447	6.53888	0.00613935	2.02788e-4	0.0517628	0.0045746
chr3	150745190	150745290	1943693	0	-	0.42	(0.419,0.45]	chr3	197663	21	INTRON	INTRON	SIAH2	ENSG00000181788.4	ENST00000312960.4:ENST00000482706.1	protein_coding	protein_coding	protein_coding	protein_coding	1	304	2	5.37011	6.414405	7.4587	0.0013474	7.81974e-5	0.0224436	0.00227541
chr5	650799	650898	2378790	0	+	0.616162	(0.58,1]	chr5	237646	25	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	129	2	6.01134	6.4141200000000005	6.8169	0.00531709	3.50609e-5	0.047841	0.00126332
chr7	151112344	151112444	3515663	0	+	0.53	(0.523,0.58]	chr7	339364	1	SS5_PROX	SS5_PROX:INTRON	AGAP3	ENSG00000133612.19	ENST00000490097.5:ENST00000463381.5:ENST00000397238.7:ENST00000622464.4:ENST00000479901.5:ENST00000473312.5:ENST00000469901.5:ENST00000476375.5:ENST00000492234.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	132	2	6.312	6.41387	6.51574	0.00409625	3.69994e-4	0.0413652	0.00704866
chr21	15045072	15045172	7640813	0	-	0.49	(0.485,0.523]	chr21	799123	11	INTRON	INTRON	NRIP1	ENSG00000180530.11	ENST00000400202.5:ENST00000318948.7:ENST00000400199.5:ENST00000638122.1:ENST00000637963.1:ENST00000637630.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	131	2	6.26763	6.413824999999999	6.56002	0.00639185	1.90696e-4	0.0529032	0.0043642
chr17	40350125	40350225	6734461	0	+	0.54	(0.523,0.58]	chr17	677353	2	SS5_PROX	SS5_PROX:INTRON	RARA	ENSG00000131759.18	ENST00000254066.10:ENST00000394089.6:ENST00000425707.7:ENST00000394086.7:ENST00000394081.7:ENST00000475125.1	protein_coding	protein_coding	protein_coding	protein_coding	0	137	2	6.06747	6.413819999999999	6.76017	0.00258949	7.30845e-4	0.0321874	0.0113963
chr10	18566461	18566561	4642393	0	-	0.41	(0.39,0.419]	chr10	443321	141	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	141	2	6.0264	6.4137699999999995	6.80114	0.00368319	0.00134695	0.0389784	0.0174765
chr20	2844925	2845025	7417419	0	+	0.41	(0.39,0.419]	chr20	772627	37	INTRON	INTRON	VPS16	ENSG00000215305.10	ENST00000380469.7:ENST00000380445.8:ENST00000453689.5:ENST00000417508.1	protein_coding	protein_coding	protein_coding	protein_coding	0	143	2	5.96596	6.41366	6.86136	0.0033099	0.00156652	0.0368376	0.0194594
chr2	25744876	25744976	1109109	0	-	0.45	(0.419,0.45]	chr2	120953	4	SS3_PROX	SS3_PROX:INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000404843.5:ENST00000673455.1:ENST00000672666.1	protein_coding	protein_coding	protein_coding	protein_coding	1	308	2	5.57563	6.413080000000001	7.25053	0.00196039	4.29998e-5	0.0277361	0.00147531
chr10	100971178	100971273	4569834	0	+	0.505263	(0.485,0.523]	chr10	436226	9	INTRON	INTRON	SEMA4G	ENSG00000095539.15	ENST00000519649.5:ENST00000521006.5:ENST00000518124.5:ENST00000518244.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	131	2	6.24485	6.412855	6.58086	0.00665813	1.79455e-4	0.0540577	0.00418827
chr6	602317	602417	3078183	0	-	0.54	(0.523,0.58]	chr6	299385	27	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	0	134	2	5.99431	6.41271	6.83111	0.0104033	8.07247e-5	0.0686837	0.00233145
chrX	132058193	132058291	7953389	0	+	0.459184	(0.45,0.485]	chrX	832056	23	INTRON	INTRON	STK26	ENSG00000134602.16	ENST00000354719.10:ENST00000394334.7:ENST00000481105.5:ENST00000394335.6:ENST00000496850.1	protein_coding	protein_coding	protein_coding	protein_coding	1	299	2	5.01712	6.41268	7.80824	4.01111e-4	1.48876e-4	0.0114353	0.00367368
chr18	13591433	13591533	7026507	0	+	0.42	(0.419,0.45]	chr18	717646	56	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000677744.1:ENST00000593236.1:ENST00000678400.1:ENST00000586207.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	141	2	6.04724	6.412520000000001	6.7778	0.00448826	0.00142238	0.0436138	0.0181715
chr11	64270928	64271020	5049347	0	-	0.554348	(0.523,0.58]	chr11	490331	2	INTRON	INTRON	BAD	ENSG00000002330.14	ENST00000309032.8:ENST00000394532.7:ENST00000544785.1:ENST00000394531.3:ENST00000493798.1:ENST00000492141.1	protein_coding	protein_coding	protein_coding	protein_coding	0	133	2	6.235	6.41245	6.5899	0.00356891	4.59688e-4	0.0383188	0.00821903
chr9	93541022	93541122	4183395	0	+	0.51	(0.485,0.523]	chr9	397655	83	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000427765.1	protein_coding	protein_coding	protein_coding	protein_coding	0	132	2	6.3084	6.412285	6.51617	0.00406194	3.92049e-4	0.0413652	0.00735595
chr22	50235021	50235121	7827211	0	-	0.58	(0.523,0.58]	chr22	821200	11	INTRON	INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	344	2	4.90543	6.411725000000001	7.91802	0.00163982	2.57424e-6	0.0250898	1.97683e-4
chr10	34727707	34727807	4670935	0	-	0.52	(0.485,0.523]	chr10	445543	309	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	131	2	6.2217	6.41155	6.6014	0.00693912	1.68998e-4	0.0553898	0.0040111
chr20	8523331	8523431	7430501	0	+	0.38	(0.36,0.39]	chr20	773698	1513	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	300	2	5.22523	6.41146	7.59769	8.2716e-4	1.05964e-4	0.017109	0.00286158
chr13	20497193	20497293	5662812	0	-	0.54	(0.523,0.58]	chr13	556208	73	INTRON	INTRON	CRYL1	ENSG00000165475.15	ENST00000643035.1:ENST00000644593.1:ENST00000298248.12:ENST00000644872.1:ENST00000382812.5:ENST00000643750.1:ENST00000644153.1:ENST00000643887.1:ENST00000644167.1:ENST00000646414.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	348	2	5.15448	6.41105	7.66762	9.93386e-4	5.83386e-6	0.0189547	3.51962e-4
chr14	95116044	95116136	6047003	0	-	0.445652	(0.419,0.45]	chr14	593249	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DICER1	ENSG00000100697.16	ENST00000343455.8:ENST00000529720.2:ENST00000674628.2:ENST00000675540.2:ENST00000531162.7:ENST00000526495.6:ENST00000696734.1:ENST00000696733.1:ENST00000393063.6:ENST00000675995.1:ENST00000527414.5:ENST00000541352.5:ENST00000556045.6:ENST00000696736.1:ENST00000532939.3:ENST00000696737.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	135	2	6.16812	6.410945	6.65377	0.0123115	2.95666e-4	0.0756356	0.00601525
chr14	68900561	68900661	5999345	0	-	0.57	(0.523,0.58]	chr14	588705	3	SS5_PROX	SS5_PROX:INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	132	2	6.28679	6.410715	6.53464	0.00395533	3.97355e-4	0.0406092	0.00741985
chr17	17686549	17686649	6688900	0	+	0.58	(0.523,0.58]	chr17	671338	16	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	132	2	6.28679	6.410715	6.53464	0.00395533	3.97355e-4	0.0406092	0.00741985
chr13	113333368	113333468	5753264	0	-	0.49	(0.485,0.523]	chr13	564094	69	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	0	134	2	6.1777	6.410625	6.64355	0.00320229	5.64449e-4	0.0361639	0.00950156
chr6	169659518	169659618	3304466	0	-	0.58	(0.523,0.58]	chr6	319894	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2:ENST00000467418.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	385	2	4.72469	6.410605	8.09652	1.76975e-4	7.39548e-5	0.00747595	0.00219171
chr5	109780500	109780598	2504288	0	+	0.397959	(0.39,0.419]	chr5	248871	52	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5	protein_coding	protein_coding	protein_coding	protein_coding	0	135	2	6.27083	6.41035	6.54987	0.00571127	7.20415e-4	0.0498083	0.0112959
chr1	109100276	109100360	201361	0	+	0.690476	(0.58,1]	chr1	21923	2	EXON_SMALL	EXON_SMALL:EXON_LNCRNA	ENSG00000270066:SCARNA2	ENSG00000270066.3:ENSG00000278249.1	ENST00000602755.1:ENST00000458748.1	scaRNA	scaRNA	scaRNA:lncRNA	scaRNA:lncRNA	508	133302	2	6.24826	6.41026	6.57226	1.16337e-6	6.54977e-10	8.94067e-4	1.01538e-6
chr5	1328304	1328402	2609098	0	-	0.510204	(0.485,0.523]	chr5	259719	20	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	288	2	5.62006	6.410135	7.20021	0.00109136	1.96821e-5	0.0198839	8.29491e-4
chr17	77214702	77214799	6803121	0	+	0.412371	(0.39,0.419]	chr17	686684	8	UTR3	UTR3:EXON_MRNA:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	3	1094	2	6.20183	6.4096150000000005	6.6174	8.16099e-5	1.31234e-6	0.00501749	1.2535e-4
chr22	23773577	23773676	7693456	0	+	0.525253	(0.523,0.58]	chr22	805203	2	INTRON	INTRON	MMP11	ENSG00000099953.10	ENST00000465385.5:ENST00000477567.5:ENST00000489582.5:ENST00000428253.1:ENST00000465730.1:ENST00000215743.8:ENST00000437086.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	146	2	5.80873	6.4094750000000005	7.01022	0.0016001	0.00145893	0.0246878	0.0184991
chr4	3361900	3362000	2005055	0	+	0.6	(0.58,1]	chr4	204663	185	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	126	2	6.21852	6.409105	6.59969	0.00350812	7.15008e-5	0.0379357	0.00213784
chr17	642498	642598	6823601	0	-	0.45	(0.419,0.45]	chr17	689804	93	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000680944.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000681830.1:ENST00000679959.1:ENST00000680114.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000570650.2:ENST00000679680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	134	2	6.32522	6.4089849999999995	6.49275	0.00956261	4.54324e-4	0.0658012	0.00818426
chr2	74032505	74032604	834324	0	+	0.606061	(0.58,1]	chr2	94249	290	INTRON	INTRON	TET3	ENSG00000187605.16	ENST00000409262.8:ENST00000305799.8	protein_coding	protein_coding	protein_coding	protein_coding	0	126	2	6.39965	6.408955000000001	6.41826	0.00241374	1.27804e-4	0.0309229	0.00328053
chr12	132533266	132533365	5352948	0	+	0.636364	(0.58,1]	chr12	523670	49	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	128	2	6.23832	6.408894999999999	6.57947	0.00165065	2.24165e-4	0.0250898	0.00490779
chr3	60424516	60424616	1797852	0	-	0.45	(0.419,0.45]	chr3	186807	3438	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	134	2	6.34633	6.40881	6.47129	0.00923958	4.80774e-4	0.0644666	0.00851282
chr1	42850158	42850242	105840	0	+	0.47619	(0.45,0.485]	chr1	12815	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF691	ENSG00000164011.18	ENST00000372502.5:ENST00000372508.7:ENST00000651192.1:ENST00000372507.5:ENST00000372506.5:ENST00000372504.5:ENST00000397034.3:ENST00000372503.2	protein_coding	protein_coding	protein_coding	protein_coding	0	134	2	6.2181	6.408805	6.59951	0.00408353	5.99406e-4	0.0413652	0.00993857
chr19	35002744	35002825	7244887	0	+	0.580247	(0.58,1]	chr19	742070	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	131	2	6.0945	6.40846	6.72242	0.00121317	3.47472e-4	0.0210863	0.00673552
chr2	168752215	168752314	947146	0	+	0.454545	(0.45,0.485]	chr2	104005	339	INTRON	INTRON	CERS6	ENSG00000172292.15	ENST00000392687.4:ENST00000305747.11	protein_coding	protein_coding	protein_coding	protein_coding	0	142	2	5.92705	6.408305	6.88956	0.00239127	0.00129636	0.0308863	0.0170746
chr6	24284972	24285071	3109593	0	-	0.454545	(0.45,0.485]	chr6	301418	64	INTRON	INTRON	DCDC2	ENSG00000146038.12	ENST00000378454.8	protein_coding	protein_coding	protein_coding	protein_coding	1	392	2	5.6075	6.40794	7.20838	4.59007e-4	3.43738e-5	0.0123493	0.00124793
chr9	112331067	112331161	4372226	0	-	0.478723	(0.45,0.485]	chr9	417756	2	INTRON	INTRON	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6:ENST00000374255.6:ENST00000343327.6:ENST00000487997.1:ENST00000210227.4:ENST00000450374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	294	2	5.10329	6.4078800000000005	7.71247	4.85705e-4	1.15109e-4	0.012769	0.00304875
chr17	15534583	15534682	6860788	0	-	0.414141	(0.39,0.419]	chr17	695094	36	INTRON	INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	2296	2	5.95693	6.40779	6.85865	2.01119e-5	6.11546e-7	0.00259846	7.56309e-5
chr11	68472006	68472106	4883593	0	+	0.45	(0.419,0.45]	chr11	470696	108	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	134	2	6.38764	6.407525	6.42741	0.00863623	5.39517e-4	0.0623824	0.00920925
chr1	228156051	228156150	358147	0	+	0.656566	(0.58,1]	chr1	40434	57	INTRON	INTRON	GJC2	ENSG00000198835.4	ENST00000366714.3	protein_coding	protein_coding	protein_coding	protein_coding	0	126	2	6.39389	6.407335	6.42078	0.00230938	1.38027e-4	0.0302623	0.00347229
chr14	54630989	54631089	5820083	0	+	0.56	(0.523,0.58]	chr14	569049	625	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	134	2	6.15367	6.407055	6.66044	0.00312705	5.76607e-4	0.0356998	0.00963379
chr13	41879210	41879309	5699273	0	-	0.393939	(0.39,0.419]	chr13	559222	104	INTRON	INTRON	VWA8	ENSG00000102763.18	ENST00000379310.8:ENST00000281496.6	protein_coding	protein_coding	protein_coding	protein_coding	0	134	2	6.31995	6.406925	6.4939	0.00628691	6.3352e-4	0.0523832	0.0102998
chr6	36065612	36065711	2904677	0	+	0.40404	(0.39,0.419]	chr6	284907	59	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000622903.4:ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5:ENST00000472333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	134	2	6.31995	6.406925	6.4939	0.00628691	6.3352e-4	0.0523832	0.0102998
chr11	63871866	63871966	4867132	0	+	0.53	(0.523,0.58]	chr11	466776	21	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5:ENST00000543674.1:ENST00000540169.5	protein_coding	protein_coding	protein_coding	protein_coding	1	286	2	5.61404	6.406905	7.19977	0.00110271	1.91131e-5	0.020005	8.15957e-4
chr17	340254	340354	6821691	0	-	0.57	(0.523,0.58]	chr17	689625	7	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000577079.5:ENST00000573780.5:ENST00000575130.5:ENST00000575634.5	protein_coding	protein_coding	protein_coding	protein_coding	0	158	2	5.5788	6.406835	7.23487	0.00262418	0.00102861	0.0278348	0.0192522
chr8	38767097	38767196	3802226	0	+	0.333333	(0.33,0.36]	chr8	365828	93	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	132	2	6.34434	6.406784999999999	6.46923	0.00669111	3.61814e-4	0.0541583	0.0069669
chr17	642299	642399	6823599	0	-	0.46	(0.45,0.485]	chr17	689804	91	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000680944.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000681830.1:ENST00000679959.1:ENST00000680114.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000570650.2:ENST00000679680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	132	2	6.16551	6.406750000000001	6.64799	0.00879664	1.80357e-4	0.0630845	0.00419938
chr18	48658357	48658457	7057851	0	+	0.4	(0.39,0.419]	chr18	720311	213	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1:ENST00000589585.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	140	2	5.85902	6.406695	6.95437	0.0177874	1.11888e-4	0.0914273	0.00298349
chr22	36145954	36146039	7805890	0	-	0.517647	(0.485,0.523]	chr22	817816	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	APOL3	ENSG00000128284.20	ENST00000424878.4:ENST00000361710.6:ENST00000397287.6:ENST00000349314.6:ENST00000397289.6:ENST00000397293.6:ENST00000422426.5:ENST00000432700.5:ENST00000531195.2:ENST00000487355.5:ENST00000487423.5:ENST00000426939.6:ENST00000534251.1:ENST00000695564.1:ENST00000487783.5:ENST00000525184.1:ENST00000485453.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	133	2	6.2048	6.4065449999999995	6.60829	0.00342137	5.23665e-4	0.0374749	0.0090184
chr10	18568559	18568659	4642414	0	-	0.4	(0.39,0.419]	chr10	443321	162	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	137	2	6.14017	6.40638	6.67259	0.00461678	0.00100955	0.0442497	0.0142887
chr1	94462991	94463089	187299	0	+	0.418367	(0.39,0.419]	chr1	20299	40	INTRON	INTRON	ABCD3	ENSG00000117528.14	ENST00000370214.9:ENST00000647998.2:ENST00000315713.5:ENST00000468860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	133	2	6.28991	6.40614	6.52237	0.00887176	3.69587e-4	0.0634853	0.00704866
chr13	33206305	33206405	5684660	0	-	0.41	(0.39,0.419]	chr13	558196	4	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	133	2	6.28991	6.40614	6.52237	0.00887176	3.69587e-4	0.0634853	0.00704866
chr7	128589058	128589158	3473765	0	+	0.41	(0.39,0.419]	chr7	335604	86	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	0	140	2	6.0264	6.40604	6.78568	0.00378521	0.00134695	0.0396337	0.0174765
chr20	34073062	34073162	7460403	0	+	0.43	(0.419,0.45]	chr20	776608	1	SS3_PROX	SS3_PROX:INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000413297.5:ENST00000246194.8:ENST00000333552.9:ENST00000442805.1:ENST00000493399.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	373	2	4.65476	6.40592	8.15708	0.004014	3.89975e-6	0.041065	2.65981e-4
chr2	72317567	72317667	1183097	0	-	0.37	(0.36,0.39]	chr2	128650	543	INTRON	INTRON	EXOC6B	ENSG00000144036.16	ENST00000272427.11:ENST00000490919.5:ENST00000471335.5:ENST00000634650.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	133	2	6.24677	6.405545	6.56432	0.00931845	3.27085e-4	0.0649153	0.00645438
chr2	172024662	172024762	954850	0	+	0.38	(0.36,0.39]	chr2	104934	24	INTRON	INTRON	METAP1D	ENSG00000172878.14	ENST00000493035.5:ENST00000315796.5:ENST00000493742.1:ENST00000491440.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	133	2	6.24677	6.405545	6.56432	0.00931845	3.27085e-4	0.0649153	0.00645438
chr1	27343572	27343672	71340	0	+	0.53	(0.523,0.58]	chr1	8036	3	SS5_PROX	SS5_PROX:INTRON	SYTL1	ENSG00000142765.18	ENST00000618673.4:ENST00000318074.9:ENST00000616558.5:ENST00000483926.5:ENST00000473280.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	130	2	6.31171	6.405475	6.49924	0.00594629	2.16101e-4	0.0506158	0.00477041
chr11	70741784	70741884	5061699	0	-	0.43	(0.419,0.45]	chr11	492701	239	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	134	2	6.38214	6.404975	6.42781	0.0080847	6.07209e-4	0.0602118	0.0100293
chr21	43958833	43958933	7625372	0	+	0.58	(0.523,0.58]	chr21	796924	32	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000448845.1:ENST00000422850.5:ENST00000546158.1	protein_coding	protein_coding	protein_coding	protein_coding	1	283	2	5.49618	6.404885	7.31359	8.79392e-4	2.78788e-5	0.0176886	0.00106752
chr12	27800354	27800453	5193973	0	+	0.40404	(0.39,0.419]	chr12	505350	23	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KLHL42	ENSG00000087448.11	ENST00000381271.7:ENST00000649445.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	133	2	6.24541	6.404579999999999	6.56375	0.00955236	3.30465e-4	0.0658012	0.00649658
chr4	886473	886572	2178467	0	-	0.585859	(0.58,1]	chr4	220626	8	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	262	2	5.40703	6.404389999999999	7.40175	2.64397e-4	1.89666e-5	0.00920003	8.10733e-4
chr4	169255525	169255625	2363957	0	-	0.38	(0.36,0.39]	chr4	235900	985	INTRON	INTRON	SH3RF1	ENSG00000154447.15	ENST00000284637.14:ENST00000508685.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	133	2	6.224	6.404285	6.58457	0.00967792	3.09569e-4	0.0661428	0.00622124
chr3	37862678	37862778	1443270	0	+	0.46	(0.45,0.485]	chr3	153955	4	SS5_PROX	SS5_PROX:INTRON	CTDSPL	ENSG00000144677.15	ENST00000273179.10:ENST00000443503.6:ENST00000435525.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	1031	2	6.19801	6.40423	6.61045	5.77693e-5	8.06197e-7	0.00421984	9.12998e-5
chr3	98786936	98787036	1516774	0	+	0.42	(0.419,0.45]	chr3	161613	15	INTRON	INTRON	ST3GAL6	ENSG00000064225.13	ENST00000265261.11:ENST00000469105.5:ENST00000462152.5:ENST00000486249.5:ENST00000497008.5:ENST00000486334.6:ENST00000394162.5:ENST00000613264.5:ENST00000483910.6:ENST00000485391.5:ENST00000492254.6:ENST00000477574.5:ENST00000485145.1:ENST00000474595.1:ENST00000477899.5:ENST00000493953.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	136	2	6.04441	6.404075000000001	6.76374	0.0149622	2.19456e-4	0.0835955	0.00483494
chr10	102648513	102648613	4576509	0	+	0.64	(0.58,1]	chr10	437280	23	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	262	2	5.39569	6.4040099999999995	7.41233	2.58019e-4	1.97256e-5	0.00908087	8.30908e-4
chr13	75393190	75393290	5727116	0	-	0.38	(0.36,0.39]	chr13	561722	160	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	2	401	2	5.03528	6.403980000000001	7.77268	5.92648e-4	4.74003e-5	0.0142947	0.00158706
chr16	23467091	23467190	6568569	0	-	0.525253	(0.523,0.58]	chr16	655371	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000567339.1:ENST00000568922.1:ENST00000566685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	135	2	6.09678	6.403969999999999	6.71116	0.00284169	6.74499e-4	0.033773	0.0108081
chr21	31717913	31718013	7649990	0	-	0.47	(0.45,0.485]	chr21	800068	112	INTRON	INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000485790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	133	2	6.24422	6.403790000000001	6.56336	0.00436001	5.58345e-4	0.0427656	0.00944382
chr17	2679315	2679413	6667323	0	+	0.408163	(0.39,0.419]	chr17	667990	13	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000397195.10:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000397193.7:ENST00000574468.1:ENST00000571495.2:ENST00000675574.1:ENST00000675385.1:ENST00000675084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	299	2	5.20234	6.40374	7.60514	8.44342e-4	1.14034e-4	0.017268	0.0030241
chr14	56583911	56584009	5825838	0	+	0.44898	(0.419,0.45]	chr14	569604	35	INTRON	INTRON	TMEM260	ENSG00000070269.14	ENST00000556810.5:ENST00000556422.5:ENST00000261556.11:ENST00000557657.5:ENST00000555497.5:ENST00000556975.5:ENST00000557626.5:ENST00000539559.6:ENST00000538838.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	136	2	6.21151	6.403689999999999	6.59587	0.00611222	9.41863e-4	0.0517172	0.0135546
chrX	71217164	71217260	7903344	0	+	0.4375	(0.419,0.45]	chrX	827967	22	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	GJB1	ENSG00000169562.13	ENST00000674844.1:ENST00000674549.1:ENST00000374029.2:ENST00000675209.1:ENST00000675368.1:ENST00000647424.1:ENST00000675609.1:ENST00000646835.1:ENST00000447581.2	protein_coding	protein_coding	protein_coding	protein_coding	0	136	2	6.21151	6.403689999999999	6.59587	0.00611222	9.41863e-4	0.0517172	0.0135546
chr1	161223266	161223349	607258	0	-	0.506024	(0.485,0.523]	chr1	72275	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	APOA2	ENSG00000158874.11	ENST00000463812.1:ENST00000468465.5:ENST00000367990.7:ENST00000481413.1:ENST00000481511.5:ENST00000470459.6:ENST00000464492.5:ENST00000491350.1:ENST00000463273.5:ENST00000469730.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	408	2	4.4012	6.403124999999999	8.40505	2.08627e-4	9.12377e-5	0.00530226	0.00465993
chr18	74915221	74915321	7092434	0	+	0.46	(0.45,0.485]	chr18	722466	94	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	157	2	5.60298	6.403085	7.20319	0.00292492	0.00131807	0.029882	0.0221729
chr12	50426663	50426763	5228900	0	+	0.39	(0.36,0.39]	chr12	507611	54	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	0	145	2	5.87084	6.40274	6.93464	0.00282234	0.00196738	0.0337022	0.022768300000000002
chr17	57097263	57097360	6759482	0	+	0.505155	(0.485,0.523]	chr17	681961	1	INTRON	INTRON	AKAP1	ENSG00000121057.13	ENST00000575322.1:ENST00000337714.8:ENST00000571629.5:ENST00000621116.4:ENST00000575186.5:ENST00000570423.5:ENST00000573085.1:ENST00000572814.1:ENST00000574683.1:ENST00000572557.5:ENST00000481416.5:ENST00000539273.5:ENST00000576591.1:ENST00000314126.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	130	2	6.24485	6.402435	6.56002	0.00665813	1.90696e-4	0.0540577	0.0043642
chr3	98746078	98746178	1516347	0	+	0.42	(0.419,0.45]	chr3	161540	121	INTRON	INTRON	ST3GAL6	ENSG00000064225.13	ENST00000489112.5:ENST00000265261.11:ENST00000460774.5:ENST00000469105.5:ENST00000466482.5:ENST00000462152.5:ENST00000486249.5:ENST00000497008.5:ENST00000486334.6:ENST00000394162.5:ENST00000613264.5:ENST00000480133.1:ENST00000465004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	321	2	5.83767	6.40226	6.96685	0.00323624	1.98255e-5	0.0363264	8.34698e-4
chr2	42667541	42667641	776450	0	+	0.4	(0.39,0.419]	chr2	89134	73	INTRON	INTRON	MTA3	ENSG00000057935.14	ENST00000405592.5:ENST00000406652.5:ENST00000407270.7:ENST00000405094.2:ENST00000406911.5:ENST00000454356.5:ENST00000409019.5:ENST00000490611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	299	2	5.18108	6.401865	7.62265	8.169e-4	1.21267e-4	0.0170128	0.00317331
chr1	214293007	214293106	340016	0	+	0.50505	(0.485,0.523]	chr1	38122	112	INTRON	INTRON	SMYD2	ENSG00000143499.14	ENST00000491455.5:ENST00000471645.5:ENST00000366957.10:ENST00000460580.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	163	2	5.48966	6.40184	7.31402	0.0033837199999999998	8.70042e-4	0.0328791	0.0175759
chr6	170398868	170398968	3076568	0	+	0.39	(0.36,0.39]	chr6	299192	29	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	13	4301	2	6.16683	6.401535	6.63624	3.93818e-5	3.4406e-8	0.00349684	1.16971e-5
chr19	33423033	33423133	7365068	0	-	0.4	(0.39,0.419]	chr19	763415	90	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000590731.6:ENST00000609145.5:ENST00000588719.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	134	2	6.10302	6.40144	6.69986	0.0120635	2.27791e-4	0.0745226	0.00496195
chrX	41887289	41887388	8033946	0	-	0.414141	(0.39,0.419]	chrX	838072	337	INTRON	INTRON	CASK	ENSG00000147044.23	ENST00000378163.7:ENST00000378168.8:ENST00000675354.1:ENST00000644347.1:ENST00000421587.8:ENST00000644219.1:ENST00000645566.1:ENST00000645986.2:ENST00000442742.7:ENST00000378158.6:ENST00000378154.3:ENST00000378166.9:ENST00000646120.2:ENST00000643831.2:ENST00000647118.2:ENST00000644770.1:ENST00000468986.7:ENST00000477823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	134	2	6.27083	6.40114	6.53145	0.00589503	7.20415e-4	0.0506158	0.0112959
chr19	35001062	35001139	7244867	0	+	0.532468	(0.523,0.58]	chr19	742059	2	INTRON	INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	327	2	4.57635	6.4003049999999995	8.22426	4.64368e-4	1.35384e-4	0.00826853	0.00645756
chr17	55313329	55313428	6757597	0	+	0.434343	(0.419,0.45]	chr17	681718	240	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	1402	2	5.62478	6.39996	7.17514	1.92753e-4	3.29287e-7	0.00782491	5.03596e-5
chr16	89305099	89305152	6659860	0	-	0.754717	(0.58,1]	chr16	666660	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	312	2	4.83995	6.399515	7.95908	0.0010245	6.47783e-7	0.0192318	7.90643e-5
chr14	104720776	104720874	5925634	0	+	0.622449	(0.58,1]	chr14	579884	21	UTR3	UTR3:EXON_MRNA	INF2	ENSG00000203485.14	ENST00000330634.11:ENST00000392634.9:ENST00000675207.1:ENST00000675638.1	protein_coding	protein_coding	protein_coding	protein_coding	0	136	2	5.90055	6.399465	6.89838	8.25028e-4	6.1741e-4	0.0170688	0.0101143
chr16	85399731	85399831	6517068	0	+	0.56	(0.523,0.58]	chr16	646391	404	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	143	2	5.84373	6.399445	6.95516	0.00178078	0.00133116	0.0262315	0.0173248
chr3	149835637	149835737	1595532	0	+	0.43	(0.419,0.45]	chr3	168720	127	INTRON	INTRON	RNF13	ENSG00000082996.20	ENST00000344229.7:ENST00000470151.5:ENST00000466478.5:ENST00000491086.5:ENST00000392894.8:ENST00000467977.5:ENST00000474348.5:ENST00000467996.1:ENST00000468648.5:ENST00000459632.5:ENST00000466795.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	136	2	6.1854	6.399395	6.61339	0.0059347	0.00100635	0.0506158	0.0142602
chr11	7577392	7577491	4792574	0	+	0.535354	(0.523,0.58]	chr11	459336	5	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PPFIBP2	ENSG00000166387.14	ENST00000684123.1:ENST00000299492.9:ENST00000527790.5:ENST00000524548.5:ENST00000529575.5:ENST00000533792.5:ENST00000532926.5:ENST00000684215.1:ENST00000650027.1:ENST00000525597.5:ENST00000529021.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	293	2	4.96557	6.398785	7.832	3.0665e-4	1.45873e-4	0.00996904	0.0036118
chr19	13139482	13139580	7212648	0	+	0.561224	(0.523,0.58]	chr19	736450	12	UTR3	UTR3:EXON_MRNA	NACC1	ENSG00000160877.6	ENST00000292431.5	protein_coding	protein_coding	protein_coding	protein_coding	6	626	2	4.28393	6.398675	8.51342	7.34463e-5	5.1334e-5	0.00479326	0.00167437
chr19	4247570	4247670	7192641	0	+	0.54	(0.523,0.58]	chr19	732523	4	SS5_PROX	SS5_PROX:INTRON	YJU2	ENSG00000105248.16	ENST00000262962.12	protein_coding	protein_coding	protein_coding	protein_coding	0	139	2	5.94389	6.398669999999999	6.85345	0.00216679	0.0010207	0.0292299	0.0143498
chr12	57162016	57162116	5240748	0	+	0.51	(0.485,0.523]	chr12	510238	3	SS3_PROX	SS3_PROX:INTRON	LRP1	ENSG00000123384.14	ENST00000243077.8	protein_coding	protein_coding	protein_coding	protein_coding	0	137	2	5.82081	6.398645	6.97648	0.0138807	5.50755e-5	0.0804838	0.00176017
chr7	47362786	47362885	3587419	0	-	0.434343	(0.419,0.45]	chr7	346030	161	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	404	2	4.92729	6.398275	7.86926	6.33602e-4	7.38665e-5	0.0147865	0.00219025
chr13	98415617	98415716	5636425	0	+	0.444444	(0.419,0.45]	chr13	553617	32	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000457029.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	142	2	5.95751	6.39808	6.83865	0.00404244	0.0017735	0.0412991	0.02121
chr10	18564762	18564862	4642376	0	-	0.38	(0.36,0.39]	chr10	443321	124	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	138	2	6.05626	6.397965	6.73967	0.00399663	0.00124043	0.0409578	0.0165207
chr9	135839159	135839259	4431138	0	-	0.49	(0.485,0.523]	chr9	423507	112	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	139	2	5.75784	6.39795	7.03806	0.0154142	4.56236e-5	0.0849828	0.00154047
chr9	123407383	123407482	4396634	0	-	0.545455	(0.523,0.58]	chr9	419589	35	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	131	2	6.26113	6.397885	6.53464	0.00395533	4.27166e-4	0.0406092	0.00779962
chr21	35744935	35745035	7664412	0	-	0.42	(0.419,0.45]	chr21	801112	897	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000475045.6	protein_coding	protein_coding	protein_coding	protein_coding	0	152	2	5.72351	6.397740000000001	7.07197	0.00310292	0.00269142	0.0329086	0.0311614
chr2	53858435	53858534	1146581	0	-	0.323232	(0.29,0.33]	chr2	125166	32	INTRON	INTRON	ASB3:GPR75	ENSG00000115239.24:ENSG00000119737.6	ENST00000406625.6:ENST00000498475.2:ENST00000459916.1:ENST00000394705.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	475	2	5.10852	6.39745	7.68638	3.43742e-4	1.13993e-5	0.0106108	5.64405e-4
chr19	36605930	36606030	7248628	0	+	0.45	(0.419,0.45]	chr19	743033	2	SS5_PROX	SS5_PROX:INTRON	ZNF382	ENSG00000161298.19	ENST00000423582.5:ENST00000292928.7:ENST00000460670.5:ENST00000460384.1:ENST00000463910.1:ENST00000439428.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	133	2	6.25998	6.397349999999999	6.53472	0.0106277	4.06527e-4	0.0698136	0.00755833
chr17	39533663	39533761	6730891	0	+	0.438776	(0.419,0.45]	chr17	676580	25	UTR3	UTR3:EXON_MRNA:INTRON	CDK12	ENSG00000167258.15	ENST00000447079.6:ENST00000559663.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	301	2	5.4243	6.396509999999999	7.36872	0.00158557	6.68467e-5	0.0245893	0.0020305
chr2	32461303	32461402	748827	0	+	0.515152	(0.485,0.523]	chr2	87278	70	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	3	464	2	4.37236	6.396369999999999	8.42038	1.11156e-4	8.83179e-5	0.00521355	0.00297454
chr2	72968047	72968147	1188473	0	-	0.45	(0.419,0.45]	chr2	128799	2	SS5_PROX	SS5_PROX:INTRON	SFXN5	ENSG00000144040.13	ENST00000272433.7:ENST00000461352.5:ENST00000474528.5:ENST00000495208.5:ENST00000482289.5:ENST00000490056.5:ENST00000411783.5:ENST00000410065.5:ENST00000482542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	133	2	6.38764	6.396295	6.40495	0.00863623	5.72149e-4	0.0623824	0.00960229
chr20	62273606	62273706	7506844	0	+	0.52	(0.485,0.523]	chr20	782711	2	SS5_PROX	SS5_PROX:INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	341	2	5.00616	6.3959150000000005	7.78567	0.00133166	4.2924e-6	0.0222979	2.82813e-4
chr15	65160529	65160627	6302289	0	-	0.438776	(0.419,0.45]	chr15	621224	14	INTRON	INTRON	CLPX	ENSG00000166855.9	ENST00000300107.7:ENST00000559152.5:ENST00000558958.1:ENST00000558103.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	135	2	6.04441	6.395195	6.74598	0.0149622	2.30334e-4	0.0835955	0.00498593
chr6	170398270	170398370	3076562	0	+	0.39	(0.36,0.39]	chr6	299192	23	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	5	1524	2	6.2413	6.395185	6.54907	9.02299e-5	3.35261e-7	0.00526893	5.10395e-5
chr16	85233665	85233765	6515405	0	+	0.53	(0.523,0.58]	chr16	646377	59	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	141	2	5.8779	6.395175	6.91245	0.00193417	0.00121652	0.0275437	0.0162693
chr10	74364635	74364735	4513822	0	+	0.43	(0.419,0.45]	chr10	431944	250	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	300	2	5.36087	6.3951	7.42933	0.00142109	8.031e-5	0.023055	0.00232467
chr8	42005643	42005743	3969241	0	-	0.47	(0.45,0.485]	chr8	379478	177	INTRON	INTRON	KAT6A	ENSG00000083168.11	ENST00000406337.6:ENST00000265713.8:ENST00000396930.4:ENST00000648335.1:ENST00000649827.1:ENST00000485568.5:ENST00000647809.1:ENST00000648030.1:ENST00000650356.1:ENST00000470574.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	131	2	6.31986	6.3943449999999995	6.46883	0.00516809	4.53935e-4	0.0472296	0.00818426
chr5	1055181	1055281	2608372	0	-	0.41	(0.39,0.419]	chr5	259538	13	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10:ENST00000634447.1	protein_coding	protein_coding	protein_coding	protein_coding	0	132	2	6.24541	6.39431	6.54321	0.00955236	3.49364e-4	0.0658012	0.00675348
chr7	135642791	135642891	3498858	0	+	0.41	(0.39,0.419]	chr7	337355	2	SS3_PROX	SS3_PROX:INTRON	NUP205	ENSG00000155561.15	ENST00000285968.11:ENST00000607647.5:ENST00000477620.5:ENST00000461255.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	132	2	6.375	6.39422	6.41344	0.00769302	4.94825e-4	0.0584869	0.00865935
chr10	79109224	79109324	4532447	0	+	0.56	(0.523,0.58]	chr10	432420	396	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	131	2	6.235	6.394145	6.55329	0.00382069	4.59688e-4	0.0398603	0.00821903
chr10	132574241	132574341	4617203	0	+	0.54	(0.523,0.58]	chr10	441139	357	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	129	2	6.2672	6.3941099999999995	6.52102	0.00644151	2.02818e-4	0.0530091	0.0045746
chr1	65166219	65166319	158633	0	+	0.38	(0.36,0.39]	chr1	18055	2	SS5_PROX	SS5_PROX:INTRON	AK4	ENSG00000162433.15	ENST00000545314.5:ENST00000497030.5:ENST00000470888.6:ENST00000546702.5:ENST00000395334.6:ENST00000327299.8:ENST00000474968.5:ENST00000479060.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	150	2	5.73251	6.39409	7.05567	0.0027486	0.00226676	0.0300665	0.028553
chr8	17904795	17904895	3946853	0	-	0.45	(0.419,0.45]	chr8	377064	80	INTRON	INTRON	FGL1	ENSG00000104760.17	ENST00000398056.6	protein_coding	protein_coding	protein_coding	protein_coding	3	1160	2	5.88946	6.39377	6.89808	5.84783e-5	4.11376e-6	0.0042453	2.76025e-4
chr17	44937954	44938054	6913739	0	-	0.39	(0.36,0.39]	chr17	704130	12	INTRON	INTRON	KIF18B	ENSG00000186185.14	ENST00000587309.5:ENST00000593135.6	protein_coding	protein_coding	protein_coding	protein_coding	0	136	2	6.11313	6.393545	6.67396	0.00448681	0.00107374	0.0436138	0.0148869
chr12	122084164	122084264	5343430	0	+	0.5	(0.485,0.523]	chr12	521864	45	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	132	2	6.1777	6.392995	6.60829	0.00342137	5.64449e-4	0.0374749	0.00950156
chr2	38325208	38325307	1123812	0	-	0.343434	(0.33,0.36]	chr2	123019	58	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	131	2	6.21073	6.392855	6.57498	0.00843224	2.7029e-4	0.0617623	0.00563203
chr19	5815206	5815305	7195538	0	+	0.494949	(0.485,0.523]	chr19	733105	94	INTRON	INTRON	NRTN	ENSG00000171119.3	ENST00000303212.3	protein_coding	protein_coding	protein_coding	protein_coding	0	129	2	6.31214	6.392825	6.47351	0.00589975	2.44978e-4	0.0506158	0.00523316
chr10	103691729	103691828	4757013	0	-	0.474747	(0.45,0.485]	chr10	454779	137	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	350	2	5.09618	6.39265	7.68912	0.00127592	7.76752e-6	0.0217654	4.3011e-4
chr20	62273506	62273606	7506843	0	+	0.49	(0.485,0.523]	chr20	782711	1	SS5_PROX	SS5_PROX:INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	283	2	5.19272	6.3923	7.59188	4.96381e-4	7.55261e-5	0.0129428	0.00222665
chr18	79357956	79358056	7099865	0	+	0.64	(0.58,1]	chr18	722963	94	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000426216.6:ENST00000307671.12:ENST00000490210.6:ENST00000590477.5:ENST00000589951.5:ENST00000588921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	260	2	5.36112	6.39198	7.42284	2.51834e-4	2.22261e-5	0.0089838	9.06675e-4
chr16	89430355	89430455	6661137	0	-	0.52	(0.485,0.523]	chr16	666747	116	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	1033	2	5.99489	6.39196	6.78903	1.71726e-4	8.21384e-8	0.00733109	2.09329e-5
chr3	188265752	188265852	1652916	0	+	0.41	(0.39,0.419]	chr3	173754	252	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	0	132	2	6.19949	6.391745	6.584	0.0103045	3.12789e-4	0.0684871	0.00625974
chr16	75306844	75306944	6644954	0	-	0.47	(0.45,0.485]	chr16	664515	4	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4:ENST00000564793.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	131	2	6.29509	6.391665	6.48824	0.00499158	4.85904e-4	0.0463896	0.00857996
chr6	111556158	111556258	2987831	0	+	0.46	(0.45,0.485]	chr6	292721	527	INTRON	INTRON	TRAF3IP2-AS1	ENSG00000231889.8	ENST00000449449.7:ENST00000685477.1:ENST00000687951.1:ENST00000438298.7:ENST00000442928.6:ENST00000532353.1:ENST00000456352.2:ENST00000440395.1	lncRNA	lncRNA	lncRNA	lncRNA	0	131	2	6.29509	6.391665	6.48824	0.00499158	4.85904e-4	0.0463896	0.00857996
chr18	13240566	13240666	7022966	0	+	0.52	(0.485,0.523]	chr18	717514	212	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000590371.5:ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000590115.1:ENST00000677055.1:ENST00000399848.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	147	2	5.73251	6.39156	7.05061	0.00184599	0.00146547	0.023492	0.0217471
chr13	100516762	100516861	5647285	0	+	0.464646	(0.45,0.485]	chr13	554135	8	INTRON	INTRON	PCCA	ENSG00000175198.17	ENST00000376286.8:ENST00000376279.7:ENST00000376285.6:ENST00000647303.1:ENST00000637657.1:ENST00000636366.1:ENST00000636475.1:ENST00000458283.5:ENST00000428969.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	132	2	6.03961	6.391125	6.74264	0.0108974	1.37232e-4	0.0707085	0.00346319
chr5	883547	883644	2608212	0	-	0.556701	(0.523,0.58]	chr5	259478	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000466684.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	129	2	6.19774	6.391105	6.58447	0.0072907	1.68436e-4	0.0567247	0.00400681
chr2	158590341	158590441	936297	0	+	0.3	(0.29,0.33]	chr2	103407	15	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000421462.5:ENST00000462335.1:ENST00000481115.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	388	2	4.59108	6.3907	8.19032	1.23593e-4	1.17751e-4	0.00604154	0.00321266
chr4	914997	915097	2178772	0	-	0.69	(0.58,1]	chr4	220691	1	SS5_PROX	SS5_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000512325.3:ENST00000510022.5:ENST00000511229.5:ENST00000511983.5:ENST00000628912.1:ENST00000513935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	125	2	6.3182	6.39016	6.46212	0.00211728	1.74994e-4	0.028892	0.00410754
chr6	35493501	35493601	3125630	0	-	0.53	(0.523,0.58]	chr6	304825	64	INTRON	INTRON	TEAD3	ENSG00000007866.22	ENST00000338863.13:ENST00000402886.9:ENST00000639578.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	134	2	5.88072	6.3899799999999995	6.89924	0.0126258	6.56505e-5	0.0761905	0.00199995
chr17	48999964	49000062	6750046	0	+	0.428571	(0.419,0.45]	chr17	680301	4	INTRON	INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000510023.5:ENST00000431824.2:ENST00000515586.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	301	2	5.48505	6.389845	7.29464	0.00181153	5.60274e-5	0.0264638	0.00178381
chr10	34375002	34375102	4667394	0	-	0.41	(0.39,0.419]	chr10	445474	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6:ENST00000544292.5	protein_coding	protein_coding	protein_coding	protein_coding	0	132	2	6.34389	6.38978	6.43567	0.00694268	5.94847e-4	0.0553898	0.0098913
chr6	116729162	116729262	2990887	0	+	0.4	(0.39,0.419]	chr6	292999	2	SS3_PROX	SS3_PROX:INTRON	KPNA5	ENSG00000196911.11	ENST00000368564.7:ENST00000356348.6	protein_coding	protein_coding	protein_coding	protein_coding	0	132	2	6.34389	6.38978	6.43567	0.00694268	5.94847e-4	0.0553898	0.0098913
chr8	22387961	22388060	3770228	0	+	0.494949	(0.485,0.523]	chr8	362727	81	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	3	564	2	3.99267	6.38978	8.78689	0.0027292	1.5387e-7	0.0331786	3.04739e-5
chr17	80275191	80275290	6807316	0	+	0.575758	(0.523,0.58]	chr17	687364	14	INTRON	INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000319921.4	protein_coding	protein_coding	protein_coding	protein_coding	0	132	2	6.15367	6.389635	6.6256	0.00333843	5.76607e-4	0.0368376	0.00963379
chr7	152259415	152259515	3735709	0	-	0.5	(0.485,0.523]	chr7	359181	63	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682916.1:ENST00000682280.1:ENST00000680039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	129	2	6.38149	6.389365	6.39724	0.00505512	3.18797e-4	0.0465263	0.00634142
chr2	222914122	222914222	1038242	0	+	0.38	(0.36,0.39]	chr2	113229	25	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000542810.1:ENST00000540115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	811	2	6.29949	6.3889949999999995	6.4785	1.48711e-4	2.38666e-6	0.00680209	1.87831e-4
chr9	120433893	120433992	4384259	0	-	0.40404	(0.39,0.419]	chr9	418299	108	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000479584.2:ENST00000690814.1:ENST00000686842.1:ENST00000691551.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000425647.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	133	2	6.07786	6.38886	6.69986	0.012565	2.27791e-4	0.0761905	0.00496195
chr10	72693066	72693166	4506257	0	+	0.42	(0.419,0.45]	chr10	431171	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	138	2	6.04724	6.388825000000001	6.73041	0.00486702	0.00142238	0.0456282	0.0181715
chr21	44316624	44316724	7627892	0	+	0.6	(0.58,1]	chr21	797348	1	SS5_PROX	SS5_PROX:INTRON	PFKL	ENSG00000141959.17	ENST00000397961.6:ENST00000349048.9:ENST00000466134.5:ENST00000474114.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	149	2	5.59324	6.388775	7.18431	0.0014734	4.34792e-4	0.0185589	0.0119405
chr12	6767724	6767819	5165693	0	+	0.6	(0.58,1]	chr12	502315	6	INTRON	INTRON	PTMS	ENSG00000159335.18	ENST00000540667.5:ENST00000309083.8:ENST00000389462.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	128	2	6.12444	6.3885749999999994	6.65271	0.00141059	3.17437e-4	0.0229261	0.00632787
chr17	17096167	17096267	6687402	0	+	0.54	(0.523,0.58]	chr17	671148	177	INTRON	INTRON	MPRIP	ENSG00000133030.22	ENST00000651222.2:ENST00000577514.5:ENST00000395811.9:ENST00000395807.2:ENST00000341712.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	130	2	6.26113	6.388434999999999	6.51574	0.00409625	4.27166e-4	0.0413652	0.00779962
chr12	132534062	132534162	5352956	0	+	0.64	(0.58,1]	chr12	523670	57	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	124	2	6.24245	6.388375	6.5343	0.00334087	8.82891e-5	0.0368376	0.00248664
chr10	18567060	18567160	4642399	0	-	0.4	(0.39,0.419]	chr10	443321	147	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	132	2	6.15206	6.38786	6.62366	0.0111378	2.80749e-4	0.0715198	0.00578259
chr10	103771758	103771857	4757821	0	-	0.515152	(0.485,0.523]	chr10	454813	42	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	0	134	2	6.06388	6.38774	6.7116	0.00281636	7.70737e-4	0.0336649	0.0118331
chr18	21779785	21779885	7029297	0	+	0.35	(0.33,0.36]	chr18	717984	1	SS5_PROX	SS5_PROX:INTRON	MIB1	ENSG00000101752.13	ENST00000578646.5:ENST00000261537.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	134	2	6.12375	6.386805000000001	6.64986	0.00388382	9.1162e-4	0.0401804	0.0133249
chr5	138349432	138349531	2543292	0	+	0.616162	(0.58,1]	chr5	252559	26	UTR3	UTR3:EXON_MRNA	FAM53C	ENSG00000120709.11	ENST00000239906.10	protein_coding	protein_coding	protein_coding	protein_coding	0	132	2	5.96814	6.386604999999999	6.80507	0.00101308	5.06433e-4	0.0191342	0.00881473
chr1	91728904	91729004	526236	0	-	0.5	(0.485,0.523]	chr1	61872	7	INTRON	INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000468996.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	146	2	5.55054	6.3861550000000005	7.22177	0.0215787	2.58512e-5	0.100612	0.0010125
chr1	23136277	23136377	423096	0	-	0.44	(0.419,0.45]	chr1	49680	27	INTRON	INTRON	LUZP1	ENSG00000169641.14	ENST00000302291.8:ENST00000314174.5:ENST00000471849.5	protein_coding	protein_coding	protein_coding	protein_coding	0	135	2	6.1588	6.386095	6.61339	0.0059347	0.00107628	0.0506158	0.0148869
chr16	4000887	4000986	6540636	0	-	0.414141	(0.39,0.419]	chr16	650503	70	INTRON	INTRON	ADCY9	ENSG00000162104.10	ENST00000294016.8:ENST00000575550.5:ENST00000571467.1:ENST00000571889.1:ENST00000572288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	147	2	5.60095	6.3858	7.17065	0.0263614	6.02936e-5	0.110638	0.00187763
chr5	856077	856177	2607915	0	-	0.54	(0.523,0.58]	chr5	259417	51	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	1	414	2	3.95411	6.385645	8.81718	0.010063	1.256e-7	0.0677615	2.69399e-5
chr17	28112005	28112105	6704798	0	+	0.48	(0.45,0.485]	chr17	673022	632	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	131	2	6.24422	6.385255000000001	6.52629	0.00466172	5.58345e-4	0.044542	0.00944382
chr8	39022114	39022214	3804128	0	+	0.32	(0.29,0.33]	chr8	366053	4	SS5_PROX	SS5_PROX:INTRON	ADAM9	ENSG00000168615.13	ENST00000678474.1:ENST00000676765.1:ENST00000676936.1:ENST00000677908.1:ENST00000677004.1:ENST00000677165.1:ENST00000481058.2:ENST00000676643.1:ENST00000676669.1:ENST00000679268.1:ENST00000677582.1:ENST00000676617.1:ENST00000677137.1:ENST00000678540.1:ENST00000677359.1:ENST00000678730.1:ENST00000487273.7:ENST00000678253.1:ENST00000676489.1:ENST00000379917.7:ENST00000468065.5:ENST00000481873.7:ENST00000676919.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	131	2	6.00161	6.3852	6.76879	0.00923185	1.12201e-4	0.0644666	0.00298349
chr8	80096224	80096324	4005350	0	-	0.4	(0.39,0.419]	chr8	382857	155	INTRON	INTRON	TPD52	ENSG00000076554.16	ENST00000518937.6:ENST00000379096.9:ENST00000519303.6:ENST00000521354.5:ENST00000518517.5:ENST00000521241.6:ENST00000523753.5:ENST00000519250.5:ENST00000520795.5:ENST00000521561.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	144	2	5.83691	6.385085	6.93326	0.00291102	0.00215135	0.0342042	0.0241566
chr3	188820234	188820334	1658484	0	+	0.43	(0.419,0.45]	chr3	173846	596	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000459897.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	132	2	6.21478	6.385015	6.55525	0.011428	3.84925e-4	0.0723462	0.00726694
chr16	18520412	18520496	6559088	0	-	0.47619	(0.45,0.485]	chr16	653701	4	SS5_PROX	SS5_PROX:INTRON	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000381474.7:ENST00000564991.5:ENST00000621364.4:ENST00000622306.5:ENST00000543392.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	140	2	5.89443	6.384655	6.87488	0.00245783	0.00141013	0.0312836	0.0180659
chr7	103936670	103936770	3663165	0	-	0.47	(0.45,0.485]	chr7	353511	191	INTRON	INTRON	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1:ENST00000681401.1:ENST00000679689.1:ENST00000681182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	377	2	4.27158	6.384565	8.49755	0.00614157	5.77697e-7	0.0517628	7.27846e-5
chrX	15678252	15678350	7848291	0	+	0.397959	(0.39,0.419]	chrX	823010	15	INTRON	INTRON	CA5BP1	ENSG00000186312.10	ENST00000380336.5:ENST00000448692.5:ENST00000380334.6:ENST00000380333.5:ENST00000380331.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	131	2	6.26783	6.38453	6.50123	0.00920367	3.91245e-4	0.0644228	0.00735482
chr2	72988548	72988648	1188683	0	-	0.46	(0.45,0.485]	chr2	128824	2	SS3_PROX	SS3_PROX:INTRON	SFXN5	ENSG00000144040.13	ENST00000272433.7:ENST00000461352.5:ENST00000474528.5:ENST00000411783.5:ENST00000410065.5:ENST00000482542.5:ENST00000463277.5:ENST00000416579.5:ENST00000464825.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	130	2	6.31986	6.384510000000001	6.44916	0.00535292	4.53935e-4	0.0480663	0.00818426
chr8	70342662	70342761	3994641	0	-	0.323232	(0.29,0.33]	chr8	382245	455	INTRON	INTRON	NCOA2	ENSG00000140396.13	ENST00000452400.7:ENST00000518287.6:ENST00000520416.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	130	2	6.05523	6.38434	6.71345	0.00839544	1.32058e-4	0.0616149	0.00336653
chr1	50959471	50959571	479731	0	-	0.42	(0.419,0.45]	chr1	56835	4	SS5_PROX	SS5_PROX:INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	133	2	6.09518	6.383935	6.67269	0.0138177	2.80959e-4	0.0803169	0.00578259
chr3	14485105	14485204	1415825	0	+	0.353535	(0.33,0.36]	chr3	151999	2	UTR3	UTR3:EXON_MRNA	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000649500.1:ENST00000622186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	393	2	5.15095	6.3837150000000005	7.61648	6.21486e-4	2.87155e-5	0.0146301	0.00109036
chr17	80634560	80634660	6809800	0	+	0.5	(0.485,0.523]	chr17	687816	84	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	287	2	5.70361	6.383645	7.06368	0.00142841	1.50555e-5	0.0231443	6.8691e-4
chr4	54058589	54058689	2238674	0	-	0.28	[0,0.29]	chr4	225543	89	INTRON	INTRON	CHIC2	ENSG00000109220.11	ENST00000263921.8:ENST00000512964.5:ENST00000510894.1:ENST00000509678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	127	2	6.2512	6.38322	6.51524	0.00212067	3.56971e-4	0.028925	0.00688785
chr1	61196922	61197022	147251	0	+	0.45	(0.419,0.45]	chr1	17147	640	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	301	2	5.52693	6.38311	7.23929	0.00200016	4.95849e-5	0.0280981	0.00163832
chr2	24589652	24589752	727965	0	+	0.5	(0.485,0.523]	chr2	84999	47	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000405141.5:ENST00000407230.5:ENST00000483904.5:ENST00000288599.9:ENST00000395856.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	338	2	4.9982	6.382899999999999	7.7676	0.00135315	4.55136e-6	0.0224546	2.94841e-4
chr16	87740723	87740823	6656488	0	-	0.56	(0.523,0.58]	chr16	665894	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	128	2	6.33346	6.38265	6.43184	0.00571732	2.62665e-4	0.0498083	0.00552802
chr10	75728746	75728846	4523451	0	+	0.47	(0.45,0.485]	chr10	432271	808	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	346	2	4.73739	6.382035	8.02668	0.00256287	2.65779e-6	0.0320885	2.014e-4
chr3	13025494	13025594	1689391	0	-	0.58	(0.523,0.58]	chr3	176542	30	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	0	129	2	6.28679	6.38198	6.47717	0.00439843	3.97355e-4	0.0429852	0.00741985
chr17	59784159	59784258	6768729	0	+	0.323232	(0.29,0.33]	chr17	682833	99	INTRON	INTRON	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592619.5:ENST00000591877.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	128	2	6.25173	6.3818649999999995	6.512	0.00588805	2.36916e-4	0.0506158	0.00511363
chr9	137780117	137780217	4266110	0	+	0.52	(0.485,0.523]	chr9	407437	4	SS5_PROX	SS5_PROX:INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	338	2	4.79277	6.381755	7.97074	0.00203874	2.34708e-6	0.0283511	1.86023e-4
chr13	94145089	94145189	5626965	0	+	0.42	(0.419,0.45]	chr13	553070	1168	INTRON	INTRON	GPC6	ENSG00000183098.11	ENST00000377047.9	protein_coding	protein_coding	protein_coding	protein_coding	0	146	2	5.62805	6.38157	7.13509	0.0280406	7.8188e-5	0.113651	0.00227541
chr21	45453523	45453622	7630798	0	+	0.585859	(0.58,1]	chr21	797656	477	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	124	2	6.3182	6.379894999999999	6.44159	0.00221069	1.74994e-4	0.0295736	0.00410754
chr4	3361501	3361601	2005051	0	+	0.63	(0.58,1]	chr4	204663	181	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	124	2	6.3182	6.379894999999999	6.44159	0.00221069	1.74994e-4	0.0295736	0.00410754
chr22	28887259	28887359	7705313	0	+	0.35	(0.33,0.36]	chr22	806317	28	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7	protein_coding	protein_coding	protein_coding	protein_coding	1	288	2	5.3614	6.3798200000000005	7.39824	9.51623e-4	6.20585e-5	0.0184489	0.00192439
chr16	57376283	57376381	6466027	0	+	0.469388	(0.45,0.485]	chr16	641365	33	INTRON	INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1	protein_coding	protein_coding	protein_coding	protein_coding	0	129	2	6.21295	6.379815000000001	6.54668	0.00810629	2.40818e-4	0.0602166	0.00517788
chr17	80025001	80025101	6982166	0	-	0.48	(0.45,0.485]	chr17	713081	110	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7	protein_coding	protein_coding	protein_coding	protein_coding	0	130	2	6.0913	6.37936	6.66742	0.00998516	1.70557e-4	0.0673647	0.00403679
chr12	2960853	2960952	5157692	0	+	0.575758	(0.523,0.58]	chr12	501258	1	INTRON	INTRON	TEAD4	ENSG00000197905.10	ENST00000358409.7:ENST00000359864.8:ENST00000540314.2:ENST00000536826.2:ENST00000543035.6:ENST00000397122.6:ENST00000443986.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	129	2	6.26113	6.378855	6.49658	0.00424382	4.27166e-4	0.0422099	0.00779962
chr5	180573587	180573687	2606409	0	+	0.56	(0.523,0.58]	chr5	259159	2	SS3_PROX	SS3_PROX:INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4	protein_coding	protein_coding	protein_coding	protein_coding	1	279	2	5.19239	6.3782499999999995	7.56411	5.30836e-4	7.26023e-5	0.0134466	0.00216169
chr5	134681388	134681485	2537667	0	+	0.329897	(0.29,0.33]	chr5	251718	13	INTRON	INTRON	SEC24A	ENSG00000113615.13	ENST00000398844.7:ENST00000322887.8:ENST00000513123.1	protein_coding	protein_coding	protein_coding	protein_coding	2	477	2	4.94078	6.37823	7.81568	5.38255e-4	4.3797e-6	0.0135434	2.86654e-4
chr10	63623741	63623840	4493844	0	+	0.333333	(0.33,0.36]	chr10	429797	30	UTR3	UTR3:EXON_MRNA	REEP3	ENSG00000165476.14	ENST00000373758.5	protein_coding	protein_coding	protein_coding	protein_coding	1	288	2	5.39969	6.37818	7.35667	0.00103133	5.53263e-5	0.019287	0.00176617
chr8	133296507	133296596	4084294	0	-	0.651685	(0.58,1]	chr8	388368	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000522738.1:ENST00000523892.5:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	751	2	6.26658	6.377785	6.48899	1.02074e-4	1.12981e-5	0.00277572	0.00197105
chr10	18566261	18566361	4642391	0	-	0.39	(0.36,0.39]	chr10	443321	139	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	133	2	6.16784	6.37761	6.58738	0.00521906	9.334e-4	0.0475638	0.0135546
chr4	77818973	77819063	2256071	0	-	0.733333	(0.58,1]	chr4	227831	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	CNOT6L	ENSG00000138767.14	ENST00000504123.7:ENST00000649644.1:ENST00000515506.6:ENST00000512485.6:ENST00000504804.7:ENST00000506166.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	320	2	5.4187	6.37683	7.33496	2.70412e-4	5.99783e-6	0.00934214	3.5765e-4
chr13	20764889	20764989	5663518	0	-	0.43	(0.419,0.45]	chr13	556263	69	INTRON	INTRON	EEF1AKMT1	ENSG00000150456.11	ENST00000382758.6:ENST00000382754.4:ENST00000460374.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	133	2	6.21151	6.3767499999999995	6.54199	0.00668959	9.41863e-4	0.0541558	0.0135546
chr12	26737963	26738063	5400649	0	-	0.39	(0.36,0.39]	chr12	528735	118	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000545235.1:ENST00000242737.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	132	2	6.22055	6.376685	6.53282	0.00573632	8.14665e-4	0.0499133	0.0123172
chr8	143321386	143321486	4095541	0	-	0.64	(0.58,1]	chr8	389123	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	128	2	5.86491	6.37667	6.88843	0.00707578	2.76213e-5	0.0558168	0.00106056
chr15	28652384	28652483	6068882	0	+	0.373737	(0.36,0.39]	chr15	596168	4	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	0	140	2	5.73711	6.376485000000001	7.01586	0.0210765	9.30176e-5	0.0996078	0.00259457
chr12	24947083	24947179	5396051	0	-	0.5625	(0.523,0.58]	chr12	528333	9	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000342945.9:ENST00000539780.5:ENST00000546285.1:ENST00000355164.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	294	2	5.86874	6.375995	6.88325	0.00204616	8.36582e-6	0.0283511	4.52433e-4
chr14	54790235	54790334	5821699	0	+	0.555556	(0.523,0.58]	chr14	569165	14	UTR3	UTR3:EXON_MRNA	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9	protein_coding	protein_coding	protein_coding	protein_coding	3	459	2	4.31164	6.375885	8.44013	1.29226e-4	8.58147e-5	0.00513437	0.00330801
chr10	75697764	75697864	4523141	0	+	0.42	(0.419,0.45]	chr10	432271	498	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	400	2	5.02786	6.375730000000001	7.7236	8.29805e-4	5.5009e-5	0.0171232	0.00176017
chr7	55445258	55445358	3591344	0	-	0.45	(0.419,0.45]	chr7	346401	87	INTRON	INTRON	VOPP1	ENSG00000154978.13	ENST00000462326.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	131	2	6.23755	6.375715	6.51388	0.0110181	4.29619e-4	0.0708586	0.00783248
chr12	27800254	27800354	5193972	0	+	0.43	(0.419,0.45]	chr12	505350	22	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KLHL42	ENSG00000087448.11	ENST00000381271.7:ENST00000649445.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	131	2	6.34633	6.375640000000001	6.40495	0.00923958	5.72149e-4	0.0644666	0.00960229
chr10	76543286	76543386	4531616	0	+	0.44	(0.419,0.45]	chr10	432362	69	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593699.5:ENST00000372499.5:ENST00000496424.2:ENST00000598708.1:ENST00000488655.5:ENST00000468134.1:ENST00000597823.1:ENST00000596228.5:ENST00000483375.1:ENST00000488759.5:ENST00000493194.2:ENST00000595936.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	131	2	6.36713	6.374635	6.38214	0.00893106	6.07209e-4	0.0637469	0.0100293
chr12	50436124	50436216	5229000	0	+	0.413043	(0.39,0.419]	chr12	507637	1	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1	protein_coding	protein_coding	protein_coding	protein_coding	0	130	2	6.28991	6.3739550000000005	6.458	0.00887176	4.39359e-4	0.0634853	0.00798319
chr10	131958543	131958642	4616613	0	+	0.585859	(0.58,1]	chr10	441116	27	UTR3	UTR3:EXON_MRNA	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	124	2	6.26544	6.373895	6.48235	0.00202884	2.06156e-4	0.0283135	0.00461335
chr13	113332671	113332770	5753257	0	-	0.585859	(0.58,1]	chr13	564094	62	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	0	123	2	6.3691	6.37366	6.37822	0.00252415	1.49225e-4	0.031696	0.00367368
chr17	40350025	40350125	6734460	0	+	0.59	(0.58,1]	chr17	677353	1	SS5_PROX	SS5_PROX:INTRON	RARA	ENSG00000131759.18	ENST00000254066.10:ENST00000394089.6:ENST00000425707.7:ENST00000394086.7:ENST00000394081.7:ENST00000475125.1	protein_coding	protein_coding	protein_coding	protein_coding	0	123	2	6.3691	6.37366	6.37822	0.00252415	1.49225e-4	0.031696	0.00367368
chr7	74500200	74500300	3391829	0	+	0.52	(0.485,0.523]	chr7	327343	457	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	0	128	2	6.12521	6.373435000000001	6.62166	0.00823189	1.59261e-4	0.0608959	0.00385073
chr11	34987722	34987822	4840601	0	+	0.37	(0.36,0.39]	chr11	463100	26	INTRON	INTRON	PDHX	ENSG00000110435.13	ENST00000448838.8:ENST00000227868.9:ENST00000430469.6:ENST00000526309.1:ENST00000477173.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	130	2	6.35556	6.37338	6.3912	0.0077647	5.20645e-4	0.0589564	0.00899129
chr3	105496833	105496933	1526764	0	+	0.42	(0.419,0.45]	chr3	162334	556	INTRON	INTRON	ALCAM	ENSG00000170017.12	ENST00000306107.9:ENST00000470756.5:ENST00000472644.6:ENST00000481337.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	131	2	6.35897	6.373305	6.38764	0.00863623	6.44911e-4	0.0623824	0.0104285
chr14	89204634	89204734	6026141	0	-	0.49	(0.485,0.523]	chr14	591423	138	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000555010.1:ENST00000557718.5:ENST00000553353.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	280	2	5.1457	6.37329	7.60088	4.87357e-4	8.73161e-5	0.0127785	0.00247172
chr19	47350044	47350140	7277337	0	+	0.395833	(0.39,0.419]	chr19	747539	3	INTRON	INTRON	DHX34	ENSG00000134815.19	ENST00000328771.9	protein_coding	protein_coding	protein_coding	protein_coding	0	130	2	6.33308	6.37326	6.41344	0.00825437	4.94825e-4	0.0609913	0.00865935
chr3	115063627	115063727	1882450	0	-	0.37	(0.36,0.39]	chr3	190971	357	INTRON	INTRON	ZBTB20	ENSG00000181722.17	ENST00000675478.1:ENST00000357258.8:ENST00000462705.5:ENST00000463890.5:ENST00000492665.5:ENST00000488663.1:ENST00000470186.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	132	2	6.19443	6.372835	6.55124	0.0055566	8.7159e-4	0.049265	0.0128912
chr1	173992654	173992754	620651	0	-	0.43	(0.419,0.45]	chr1	73461	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RC3H1	ENSG00000135870.12	ENST00000367696.7:ENST00000258349.8:ENST00000367694.2	protein_coding	protein_coding	protein_coding	protein_coding	0	133	2	6.1854	6.37279	6.56018	0.00648928	0.00100635	0.0532359	0.0142602
chr18	5991943	5992043	7109627	0	-	0.5	(0.485,0.523]	chr18	723820	220	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000400105.6:ENST00000317931.12	protein_coding	protein_coding	protein_coding	protein_coding	0	133	2	6.03396	6.3727800000000006	6.7116	0.00281636	8.35707e-4	0.0336649	0.012554
chr15	90034326	90034426	6183888	0	+	0.42	(0.419,0.45]	chr15	608320	271	INTRON	INTRON	ZNF710	ENSG00000140548.10	ENST00000268154.9:ENST00000559419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	136	2	6.04724	6.372585000000001	6.69793	0.00514373	0.00142238	0.0471181	0.0181715
chr2	73012658	73012758	1188929	0	-	0.38	(0.36,0.39]	chr2	128846	107	INTRON	INTRON	SFXN5	ENSG00000144040.13	ENST00000272433.7:ENST00000461352.5:ENST00000474528.5:ENST00000411783.5:ENST00000410065.5:ENST00000463277.5:ENST00000416579.5:ENST00000464825.5:ENST00000450185.5:ENST00000442582.1:ENST00000487508.5:ENST00000497144.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	406	2	4.47888	6.372585	8.26629	2.4242e-4	2.27617e-4	0.00851514	0.00520035
chr5	80981519	80981619	2468449	0	+	0.48	(0.45,0.485]	chr5	246550	201	INTRON	INTRON	RASGRF2	ENSG00000113319.13	ENST00000265080.9:ENST00000503795.1:ENST00000638442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	130	2	6.03961	6.372565	6.70552	0.0108974	1.52809e-4	0.0707085	0.00372909
chr1	52219673	52219773	125563	0	+	0.43	(0.419,0.45]	chr1	15551	28	INTRON	INTRON	ZFYVE9	ENSG00000157077.16	ENST00000287727.8:ENST00000371591.2:ENST00000357206.6:ENST00000361625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	134	2	6.13171	6.37255	6.61339	0.0059347	0.00115219	0.0506158	0.0157112
chr16	12170716	12170816	6391575	0	+	0.55	(0.523,0.58]	chr16	631959	351	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	130	2	5.96674	6.37228	6.77782	0.0109075	9.47932e-5	0.0707085	0.00262417
chr5	90470643	90470743	2721372	0	-	0.46	(0.45,0.485]	chr5	267630	87	INTRON	INTRON	MBLAC2	ENSG00000176055.10	ENST00000316610.7	protein_coding	protein_coding	protein_coding	protein_coding	0	129	2	6.29509	6.3721250000000005	6.44916	0.00535292	4.85904e-4	0.0480663	0.00857996
chr15	99601840	99601940	6198699	0	+	0.35	(0.33,0.36]	chr15	609960	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MEF2A	ENSG00000068305.18	ENST00000560493.5:ENST00000354410.9:ENST00000558812.5:ENST00000558856.5:ENST00000685785.1:ENST00000559036.5:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000558049.5:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1:ENST00000559903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	129	2	6.36545	6.372055	6.37866	0.00644852	4.63001e-4	0.0530227	0.00825119
chr17	7110567	7110666	6847739	0	-	0.424242	(0.419,0.45]	chr17	693423	13	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	296	2	5.17319	6.371875	7.57056	0.00109906	1.37497e-4	0.0199966	0.00346884
chr6	128053365	128053465	3252477	0	-	0.56	(0.523,0.58]	chr6	315116	437	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000415046.6:ENST00000524481.5:ENST00000531050.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	130	2	6.15367	6.371785	6.5899	0.00356891	5.76607e-4	0.0383188	0.00963379
chr14	22600787	22600882	5755760	0	+	0.473684	(0.45,0.485]	chr14	564634	2	INTRON	INTRON	ABHD4	ENSG00000100439.11	ENST00000537243.5:ENST00000544562.5:ENST00000542041.1:ENST00000428304.7:ENST00000216327.10:ENST00000539344.1:ENST00000418446.6:ENST00000545034.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	132	2	6.10862	6.371695	6.63477	0.00382972	8.0459e-4	0.0399078	0.012189
chr19	6691825	6691924	7322660	0	-	0.525253	(0.523,0.58]	chr19	756435	7	INTRON	INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000695653.1:ENST00000695654.1:ENST00000695692.1:ENST00000695652.1:ENST00000695655.1:ENST00000598805.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	129	2	6.2084	6.37152	6.53464	0.00395533	4.95211e-4	0.0406092	0.00865935
chr21	37463097	37463197	7619941	0	+	0.38	(0.36,0.39]	chr21	796063	64	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	0	134	2	6.08498	6.371015	6.65705	0.00462176	0.00115345	0.0442699	0.0157112
chr13	77023253	77023352	5731524	0	-	0.474747	(0.45,0.485]	chr13	561841	10	INTRON	INTRON	FBXL3	ENSG00000005812.11	ENST00000355619.10:ENST00000417323.1:ENST00000472949.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	128	2	6.2813	6.370744999999999	6.46019	0.00719875	3.07362e-4	0.056408	0.00618726
chr6	56916809	56916909	3156911	0	-	0.47	(0.45,0.485]	chr6	308029	158	INTRON	INTRON	DST	ENSG00000151914.22	ENST00000680361.1:ENST00000449297.6:ENST00000650917.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	128	2	6.2813	6.370744999999999	6.46019	0.00719875	3.07362e-4	0.056408	0.00618726
chr16	83917479	83917578	6513099	0	+	0.59596	(0.58,1]	chr16	646141	21	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	124	2	6.03893	6.37071	6.70249	0.00503456	5.11463e-5	0.0464858	0.00167326
chr8	38794496	38794596	3802507	0	+	0.37	(0.36,0.39]	chr8	365849	53	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5:ENST00000522544.5:ENST00000524354.5:ENST00000523239.5:ENST00000317827.9:ENST00000276520.12:ENST00000520973.5:ENST00000521528.6:ENST00000521935.5:ENST00000523834.1:ENST00000521154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	130	2	6.34447	6.370675	6.39688	0.00723998	5.89187e-4	0.0565323	0.00981079
chrX	16830854	16830952	7849904	0	+	0.510204	(0.485,0.523]	chrX	823216	7	INTRON	INTRON	TXLNG	ENSG00000086712.13	ENST00000398155.4:ENST00000380122.10	protein_coding	protein_coding	protein_coding	protein_coding	0	127	2	6.26763	6.37057	6.47351	0.00639185	2.44978e-4	0.0529032	0.00523316
chr9	134368476	134368576	4261108	0	+	0.45	(0.419,0.45]	chr9	406311	415	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	302	2	4.96958	6.370395	7.77121	7.59955e-4	2.44007e-4	0.0162896	0.00522003
chr21	44316524	44316624	7627891	0	+	0.64	(0.58,1]	chr21	797347	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PFKL	ENSG00000141959.17	ENST00000397961.6:ENST00000349048.9:ENST00000466134.5:ENST00000474114.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	130	2	5.96814	6.37036	6.77258	0.00108768	5.06433e-4	0.0198535	0.00881473
chr19	33506162	33506261	7365915	0	-	0.50505	(0.485,0.523]	chr19	763467	48	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000651646.1:ENST00000590408.1:ENST00000593163.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	127	2	6.31214	6.370185	6.42823	0.00589975	2.78987e-4	0.0506158	0.00577243
chr17	17716631	17716731	6689201	0	+	0.53	(0.523,0.58]	chr17	671338	317	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	127	2	6.19774	6.37011	6.54248	0.0072907	1.90498e-4	0.0567247	0.0043642
chr4	6299858	6299957	2010600	0	+	0.565657	(0.523,0.58]	chr4	205141	43	INTRON	INTRON	WFS1	ENSG00000109501.15	ENST00000673991.1:ENST00000503569.5:ENST00000226760.5:ENST00000682275.1:ENST00000506362.2:ENST00000684087.1:ENST00000683395.1:ENST00000673642.1:ENST00000507765.1:ENST00000513395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	127	2	6.35489	6.36999	6.38509	0.00549977	3.00426e-4	0.0489559	0.00607383
chr6	31735961	31736061	3119445	0	-	0.45	(0.419,0.45]	chr6	303333	3	SS5_PROX	SS5_PROX:INTRON	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000616760.1:ENST00000375784.8	protein_coding	protein_coding	protein_coding	protein_coding	1	305	2	4.90752	6.369925	7.83233	6.7859e-4	2.89991e-4	0.0153241	0.0059241
chr6	2268116	2268214	2824605	0	+	0.44898	(0.419,0.45]	chr6	277256	19	INTRON	INTRON	GMDS-DT	ENSG00000250903.10	ENST00000657072.1:ENST00000529893.6:ENST00000659523.1:ENST00000659643.1:ENST00000660978.1:ENST00000691004.1:ENST00000664738.1:ENST00000532124.6:ENST00000691547.1:ENST00000663428.1:ENST00000654526.1:ENST00000670895.1:ENST00000532564.8:ENST00000685772.1:ENST00000687264.1:ENST00000660533.1:ENST00000531092.6:ENST00000524770.6:ENST00000657589.1:ENST00000607519.2:ENST00000456943.6:ENST00000525811.5:ENST00000534441.5:ENST00000533653.5:ENST00000534468.1:ENST00000530346.6:ENST00000662000.1:ENST00000665610.1:ENST00000654970.1	lncRNA	lncRNA	lncRNA	lncRNA	1	368	2	5.14059	6.369255000000001	7.59792	0.00166907	2.06117e-5	0.0252923	8.58121e-4
chrX	47220094	47220192	7877804	0	+	0.469388	(0.45,0.485]	chrX	825683	6	INTRON	INTRON	CDK16	ENSG00000102225.17	ENST00000517997.5:ENST00000517479.1:ENST00000457458.6:ENST00000522883.1:ENST00000520295.5:ENST00000357227.9:ENST00000519758.5:ENST00000520893.5:ENST00000517426.5:ENST00000522234.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	128	2	6.34655	6.36914	6.39173	0.00642055	3.72107e-4	0.0529785	0.00707906
chr16	3871153	3871253	6539848	0	-	0.48	(0.45,0.485]	chr16	650426	198	INTRON	INTRON	CREBBP	ENSG00000005339.15	ENST00000262367.10:ENST00000382070.7	protein_coding	protein_coding	protein_coding	protein_coding	2	388	2	4.56369	6.369104999999999	8.17452	1.91251e-4	1.46229e-4	0.00779591	0.00362008
chr8	78815965	78816064	3846766	0	+	0.454545	(0.45,0.485]	chr8	369290	99	INTRON	INTRON	ENSG00000285744	ENSG00000285744.1	ENST00000649603.1	lncRNA	lncRNA	lncRNA	lncRNA	0	133	2	5.87243	6.368975	6.86552	0.0143887	9.58344e-5	0.0821732	0.00264329
chr2	236077948	236078048	1068401	0	+	0.49	(0.485,0.523]	chr2	115777	55	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000418654.1:ENST00000466575.5:ENST00000453371.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	128	2	6.25753	6.367565	6.4776	0.00436205	4.52177e-4	0.0427656	0.00816702
chr6	158027564	158027663	3059768	0	+	0.515152	(0.485,0.523]	chr6	297374	3	EXON_MRNA	EXON_MRNA:INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2:ENST00000640569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	128	2	6.25753	6.367565	6.4776	0.00436205	4.52177e-4	0.0427656	0.00816702
chr10	18564462	18564562	4642373	0	-	0.42	(0.419,0.45]	chr10	443321	121	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	132	2	6.21151	6.367545	6.52358	0.00689831	9.41863e-4	0.0553728	0.0135546
chr2	55022990	55023090	1148257	0	-	0.42	(0.419,0.45]	chr2	125466	86	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	0	131	2	6.1199	6.36753	6.61516	0.0132894	3.27987e-4	0.0787251	0.00646148
chr6	12065611	12065711	2854675	0	+	0.53	(0.523,0.58]	chr6	278961	265	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	0	129	2	6.18129	6.36729	6.55329	0.00382069	5.34061e-4	0.0398603	0.0091384
chrX	20265498	20265557	7995416	0	-	0.491525	(0.485,0.523]	chrX	836374	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	RPS6KA3	ENSG00000177189.14	ENST00000379565.9:ENST00000643085.1:ENST00000645270.1:ENST00000643402.1:ENST00000644368.1:ENST00000647265.1:ENST00000645268.1:ENST00000646610.1:ENST00000643337.1:ENST00000642835.1:ENST00000644893.1:ENST00000438357.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	276	2	5.32525	6.3672699999999995	7.40929	7.18613e-4	5.0019e-5	0.0158219	0.00164756
chr17	57464110	57464210	6761853	0	+	0.53	(0.523,0.58]	chr17	682137	190	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	127	2	6.14951	6.3669899999999995	6.58447	0.00793972	1.68436e-4	0.0596361	0.00400681
chr1	193193704	193193804	309670	0	+	0.36	(0.33,0.36]	chr1	35001	66	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1:ENST00000649613.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	133	2	6.06688	6.366925	6.66697	0.00376513	0.00105663	0.0395491	0.0147548
chr1	246233623	246233723	703121	0	-	0.44	(0.419,0.45]	chr1	82422	400	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	300	2	5.57563	6.36684	7.15805	0.0023114	4.29998e-5	0.0302623	0.00147531
chr22	20124235	20124332	7686885	0	+	0.597938	(0.58,1]	chr22	804214	2	EXON_MRNA	EXON_MRNA:INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000331821.7:ENST00000411892.5:ENST00000423859.5:ENST00000418705.2:ENST00000448394.2:ENST00000486575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	123	2	6.29206	6.366825	6.44159	0.00221069	1.89825e-4	0.0295736	0.0043642
chr2	120043009	120043109	886178	0	+	0.45	(0.419,0.45]	chr2	100280	5	INTRON	INTRON	EPB41L5	ENSG00000115109.14	ENST00000263713.10:ENST00000443902.6:ENST00000331393.8:ENST00000443124.5:ENST00000452780.1:ENST00000466241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	359	2	4.8408	6.366585	7.89237	0.00287888	8.6322e-6	0.0341432	4.62143e-4
chr9	135836964	135837064	4431116	0	-	0.47	(0.45,0.485]	chr9	423507	90	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	129	2	6.06569	6.366555	6.66742	0.0104281	1.70557e-4	0.0687558	0.00403679
chr21	44859662	44859762	7678431	0	-	0.52	(0.485,0.523]	chr21	802754	29	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000397886.3:ENST00000474737.5:ENST00000494690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	860	2	5.85745	6.36592	6.87439	2.5922e-5	9.15692e-6	0.00292072	4.8209e-4
chr5	37123865	37123963	2638220	0	-	0.438776	(0.419,0.45]	chr5	261769	10	INTRON	INTRON	CPLANE1	ENSG00000197603.16	ENST00000508244.5:ENST00000651892.2:ENST00000676160.1:ENST00000509849.5:ENST00000514429.5:ENST00000512288.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	130	2	6.28205	6.365785	6.44952	0.0102557	5.09118e-4	0.0684871	0.00884498
chr10	114583460	114583560	4763633	0	-	0.24	[0,0.29]	chr10	455655	75	INTRON	INTRON	ABLIM1	ENSG00000099204.21	ENST00000533213.7:ENST00000392955.7:ENST00000369256.6:ENST00000649363.1:ENST00000651092.1:ENST00000651023.1	protein_coding	protein_coding	protein_coding	protein_coding	0	139	2	5.75219	6.36572	6.97925	0.00142668	7.87525e-4	0.0182112	0.0166761
chr6	43050590	43050682	3135535	0	-	0.565217	(0.523,0.58]	chr6	305972	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CUL7	ENSG00000044090.13	ENST00000265348.9:ENST00000690231.1:ENST00000685042.1:ENST00000689256.1:ENST00000674112.2:ENST00000674134.1:ENST00000674100.1:ENST00000686442.1:ENST00000688302.1:ENST00000673753.1:ENST00000687225.1:ENST00000688707.1:ENST00000683493.1:ENST00000683160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	137	2	5.8779	6.3656749999999995	6.85345	0.00216679	0.00121652	0.0292299	0.0162693
chr7	139703444	139703544	3723180	0	-	0.42	(0.419,0.45]	chr7	357498	714	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	130	2	6.3038	6.365605	6.42741	0.00990101	5.39517e-4	0.0671959	0.00920925
chr20	44402135	44402217	7482934	0	+	0.439024	(0.419,0.45]	chr20	779635	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000682427.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	817	2	5.76821	6.365460000000001	6.96271	5.17032e-4	6.39041e-7	0.0132146	7.8339e-5
chr6	70729378	70729478	2938091	0	+	0.5	(0.485,0.523]	chr6	289077	603	INTRON	INTRON	SMAP1	ENSG00000112305.15	ENST00000370452.7:ENST00000316999.9:ENST00000370455.8:ENST00000619054.4	protein_coding	protein_coding	protein_coding	protein_coding	0	143	2	5.73251	6.364795000000001	6.99708	0.00184599	0.00162697	0.0249683	0.0217471
chr9	123100326	123100418	4235439	0	+	0.434783	(0.419,0.45]	chr9	402054	4	INTRON	INTRON	RABGAP1	ENSG00000011454.18	ENST00000456584.5:ENST00000373647.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	135	2	6.04724	6.364330000000001	6.68142	0.00529005	0.00142238	0.047841	0.0181715
chr1	174403144	174403244	280432	0	+	0.38	(0.36,0.39]	chr1	32717	86	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	130	2	6.2714	6.3640550000000005	6.45671	0.00653798	7.13729e-4	0.0535312	0.0112151
chr20	44404374	44404473	7482959	0	+	0.494949	(0.485,0.523]	chr20	779645	11	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	333	2	4.84693	6.364050000000001	7.88117	0.00183106	3.14594e-6	0.0266464	2.2754e-4
chr3	32864819	32864919	1439340	0	+	0.39	(0.36,0.39]	chr3	153401	455	INTRON	INTRON	TRIM71	ENSG00000206557.6	ENST00000383763.6	protein_coding	protein_coding	protein_coding	protein_coding	1	357	2	5.12071	6.363875	7.60704	0.00148254	1.65363e-5	0.0236348	7.34904e-4
chr12	49513205	49513305	5226643	0	+	0.38	(0.36,0.39]	chr12	507246	3	SS5_PROX	SS5_PROX:INTRON	SPATS2	ENSG00000123352.18	ENST00000549412.5:ENST00000552918.6:ENST00000553127.5:ENST00000321898.10:ENST00000552557.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	129	2	6.29128	6.36387	6.43646	0.0086512	4.61522e-4	0.0623824	0.00824056
chr6	10588613	10588713	2850433	0	+	0.45	(0.419,0.45]	chr6	278695	13	INTRON	INTRON	GCNT2	ENSG00000111846.20	ENST00000410107.5:ENST00000489225.5:ENST00000397423.7:ENST00000495262.7:ENST00000475577.5:ENST00000489819.5:ENST00000474518.1:ENST00000379597.7:ENST00000485764.1:ENST00000461400.1:ENST00000316170.9:ENST00000459872.1:ENST00000265012.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	130	2	6.19164	6.36318	6.53472	0.0118587	4.06527e-4	0.0740271	0.00755833
chr18	80177463	80177562	7183053	0	-	0.484848	(0.45,0.485]	chr18	730359	165	INTRON	INTRON	PARD6G	ENSG00000178184.16	ENST00000353265.8	protein_coding	protein_coding	protein_coding	protein_coding	0	129	2	6.03961	6.363105	6.6866	0.0108974	1.61391e-4	0.0707085	0.00387712
chr2	87548907	87549007	848139	0	+	0.46	(0.45,0.485]	chr2	95749	275	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000642451.1:ENST00000644478.1:ENST00000409139.6:ENST00000644125.1:ENST00000643743.1:ENST00000643276.1:ENST00000409898.2:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000646636.1:ENST00000629257.1:ENST00000409054.2	lncRNA	lncRNA	lncRNA	lncRNA	0	129	2	6.03961	6.363105	6.6866	0.0108974	1.61391e-4	0.0707085	0.00387712
chr10	87309382	87309482	4724245	0	-	0.41	(0.39,0.419]	chr10	450899	9	INTRON	INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6:ENST00000456104.5:ENST00000433530.7:ENST00000688257.1:ENST00000433920.5:ENST00000687925.1:ENST00000666515.2:ENST00000688926.1:ENST00000447424.6:ENST00000690598.1:ENST00000663113.1:ENST00000667520.2:ENST00000693252.1:ENST00000687827.1:ENST00000687141.1:ENST00000654503.2:ENST00000655272.2:ENST00000668676.1:ENST00000653080.1:ENST00000690287.1:ENST00000413722.6:ENST00000653238.1:ENST00000660454.1:ENST00000688790.1	lncRNA	lncRNA	lncRNA	lncRNA	0	130	2	6.27083	6.363085	6.45534	0.00671435	7.20415e-4	0.0541693	0.0112959
chr2	239158459	239158557	1390281	0	-	0.367347	(0.36,0.39]	chr2	148698	13	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	129	2	6.224	6.362905	6.50181	0.00967792	3.87323e-4	0.0661428	0.00729662
chr8	98544674	98544774	4023354	0	-	0.39	(0.36,0.39]	chr8	384335	174	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000520440.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	129	2	6.224	6.362905	6.50181	0.00967792	3.87323e-4	0.0661428	0.00729662
chr11	26559805	26559902	5018357	0	-	0.402062	(0.39,0.419]	chr11	485320	9	UTR3	UTR3:EXON_MRNA	MUC15	ENSG00000169550.14	ENST00000529533.6:ENST00000455601.6:ENST00000436318.6:ENST00000281268.12	protein_coding	protein_coding	protein_coding	protein_coding	0	129	2	6.28991	6.3629	6.43589	0.00887176	4.66094e-4	0.0634853	0.00828434
chr8	726757	726857	3932998	0	-	0.47	(0.45,0.485]	chr8	376060	104	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	281	2	5.45189	6.36194	7.27199	0.00115418	3.98376e-5	0.0205679	0.00138924
chr15	58609441	58609536	6278045	0	-	0.389474	(0.36,0.39]	chr15	618664	4	EXON_MRNA	EXON_MRNA:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000482945.5:ENST00000396136.6:ENST00000470269.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	129	2	6.20085	6.3619	6.52295	0.0100561	3.65857e-4	0.0677306	0.00700609
chrX	45752741	45752841	8036094	0	-	0.44	(0.419,0.45]	chrX	838212	61	INTRON	INTRON	MIR222HG	ENSG00000270069.2	ENST00000602461.1	lncRNA	lncRNA	lncRNA	lncRNA	0	131	2	6.07002	6.3618950000000005	6.65377	0.0143746	2.95666e-4	0.0821732	0.00601525
chrX	133650340	133650440	8112659	0	-	0.42	(0.419,0.45]	chrX	845480	534	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000692074.1:ENST00000667662.1:ENST00000666017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	293	2	5.3138	6.361605	7.40941	0.00147325	9.19746e-5	0.0235837	0.00256719
chr17	72537470	72537570	6963685	0	-	0.48	(0.45,0.485]	chr17	710389	30	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	138	2	5.6833	6.36149	7.03968	0.0195193	5.71642e-5	0.0955413	0.00180869
chr2	10367777	10367877	719077	0	+	0.66	(0.58,1]	chr2	84032	130	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	122	2	6.34387	6.361045	6.37822	0.00252415	1.61506e-4	0.031696	0.00387712
chr12	15780378	15780478	5380404	0	-	0.46	(0.45,0.485]	chr12	527514	4	SS5_PROX	SS5_PROX:INTRON	EPS8	ENSG00000151491.14	ENST00000281172.10:ENST00000543523.5:ENST00000543468.5:ENST00000644374.1:ENST00000646918.1:ENST00000645775.1:ENST00000642939.1:ENST00000646828.1:ENST00000647224.1:ENST00000642278.1:ENST00000646123.1:ENST00000647087.1:ENST00000536956.5:ENST00000535752.5:ENST00000536793.5:ENST00000543363.5:ENST00000544064.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	375	2	4.95246	6.36078	7.7691	4.3379e-4	4.44511e-5	0.0119405	0.00150854
chr21	43974172	43974271	7625533	0	+	0.292929	(0.29,0.33]	chr21	796959	23	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000398063.6:ENST00000398058.5:ENST00000546158.1:ENST00000479117.5:ENST00000467358.5:ENST00000484865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	139	2	5.62984	6.360765	7.09169	0.0174273	4.25342e-5	0.0901531	0.00146053
chr8	9773118	9773216	3754909	0	+	0.234694	[0,0.29]	chr8	360888	3	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	0	124	2	6.32821	6.360565	6.39292	0.0027299	2.85379e-4	0.0331786	0.00585704
chr3	78982415	78982515	1837330	0	-	0.35	(0.33,0.36]	chr3	188611	431	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	0	139	2	5.84807	6.360365	6.87266	0.00258098	0.00184078	0.0321738	0.0217471
chr4	53143732	53143832	2235949	0	-	0.45	(0.419,0.45]	chr4	225488	2225	INTRON	INTRON	SCFD2	ENSG00000184178.17	ENST00000401642.8:ENST00000388940.8	protein_coding	protein_coding	protein_coding	protein_coding	0	130	2	6.14421	6.359855	6.5755	0.0127879	3.64701e-4	0.0769397	0.00699922
chr6	13303166	13303266	3095588	0	-	0.45	(0.419,0.45]	chr6	300514	79	INTRON	INTRON	TBC1D7	ENSG00000145979.18	ENST00000606214.5:ENST00000421203.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	130	2	6.14421	6.359855	6.5755	0.0127879	3.64701e-4	0.0769397	0.00699922
chr14	95420717	95420817	6048985	0	-	0.42	(0.419,0.45]	chr14	593443	23	INTRON	INTRON	SYNE3	ENSG00000176438.13	ENST00000682763.1:ENST00000557275.5:ENST00000334258.9:ENST00000554873.5	protein_coding	protein_coding	protein_coding	protein_coding	0	130	2	6.31147	6.3596699999999995	6.40787	0.00835435	7.29222e-4	0.0613588	0.0113963
chr2	135390601	135390701	1275021	0	-	0.48	(0.45,0.485]	chr2	137449	4	SS5_PROX	SS5_PROX:INTRON	ZRANB3	ENSG00000121988.18	ENST00000264159.11:ENST00000401392.5:ENST00000536680.5:ENST00000403017.2:ENST00000452187.6:ENST00000492193.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	130	2	5.95844	6.359645	6.76085	0.0124835	1.3016e-4	0.0761905	0.00332369
chr13	51608949	51609049	5604195	0	+	0.41	(0.39,0.419]	chr13	552016	96	INTRON	INTRON	WDFY2	ENSG00000139668.9	ENST00000298125.7	protein_coding	protein_coding	protein_coding	protein_coding	0	129	2	6.17597	6.359590000000001	6.54321	0.0107103	3.49364e-4	0.0701493	0.00675348
chr9	32967273	32967372	4291968	0	-	0.464646	(0.45,0.485]	chr9	409955	1	INTRON	INTRON	APTX	ENSG00000137074.20	ENST00000672846.1:ENST00000672519.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	127	2	6.2813	6.359515	6.43773	0.00719875	3.27319e-4	0.056408	0.00645438
chr15	82369861	82369961	6165609	0	+	0.56	(0.523,0.58]	chr15	606819	141	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	135	2	5.91127	6.359415	6.80756	0.00236582	0.00111349	0.0306624	0.0152496
chrX	119237287	119237384	7943998	0	+	0.525773	(0.523,0.58]	chrX	831205	2	INTRON	INTRON	PGRMC1	ENSG00000101856.10	ENST00000535419.2:ENST00000217971.8	protein_coding	protein_coding	protein_coding	protein_coding	0	135	2	5.91127	6.359415	6.80756	0.00236582	0.00111349	0.0306624	0.0152496
chr19	47230528	47230628	7392387	0	-	0.84	(0.58,1]	chr19	768107	2	SS5_PROX	SS5_PROX:INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	2	338	2	4.96936	6.359360000000001	7.74936	1.17491e-4	1.72582e-5	0.00604041	7.58161e-4
chr3	13024694	13024794	1689383	0	-	0.54	(0.523,0.58]	chr3	176542	22	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	0	126	2	6.33346	6.359275	6.38509	0.00571732	3.00426e-4	0.0498083	0.00607383
chr7	44454881	44454981	3584743	0	-	0.47	(0.45,0.485]	chr7	345547	268	INTRON	INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000472246.5:ENST00000464812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	130	2	6.13678	6.359165	6.58155	0.00421879	7.46272e-4	0.0421633	0.0115813
chr18	6133296	6133396	7111047	0	-	0.49	(0.485,0.523]	chr18	723846	394	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000400105.6:ENST00000317931.12:ENST00000400104.7	protein_coding	protein_coding	protein_coding	protein_coding	0	139	2	5.80515	6.359015	6.91288	0.00191584	0.00153111	0.0274102	0.0191213
chr10	133349886	133349986	4783433	0	-	0.63	(0.58,1]	chr10	457516	37	INTRON	INTRON	ENSG00000226699	ENSG00000226699.1	ENST00000452591.1	lncRNA	lncRNA	lncRNA	lncRNA	1	273	2	4.84837	6.35891	7.86945	1.2454e-4	8.84248e-5	0.00521355	0.00322977
chr13	40894465	40894565	5693918	0	-	0.5	(0.485,0.523]	chr13	558820	111	INTRON	INTRON	SUGT1P3	ENSG00000239827.8	ENST00000633814.1:ENST00000632487.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	126	2	6.2217	6.358665	6.49563	0.00693912	2.29841e-4	0.0553898	0.00498593
chr3	152332712	152332812	1599025	0	+	0.43	(0.419,0.45]	chr3	168984	304	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	0	131	2	6.04441	6.35855	6.67269	0.0149622	2.80959e-4	0.0835955	0.00578259
chr7	17861229	17861329	3546815	0	-	0.53	(0.523,0.58]	chr7	342732	99	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	129	2	5.93864	6.358230000000001	6.77782	0.0114442	9.47932e-5	0.0723462	0.00262417
chr11	7577638	7577738	4792577	0	+	0.57	(0.523,0.58]	chr11	459338	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PPFIBP2	ENSG00000166387.14	ENST00000684123.1:ENST00000299492.9:ENST00000527790.5:ENST00000524548.5:ENST00000529575.5:ENST00000533792.5:ENST00000532926.5:ENST00000684215.1:ENST00000650027.1:ENST00000525597.5:ENST00000529021.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	136	2	5.8779	6.35811	6.83832	0.00223061	0.00121652	0.0297064	0.0162693
chr18	80177363	80177463	7183052	0	-	0.46	(0.45,0.485]	chr18	730359	164	INTRON	INTRON	PARD6G	ENSG00000178184.16	ENST00000353265.8	protein_coding	protein_coding	protein_coding	protein_coding	0	127	2	6.18942	6.357480000000001	6.52554	0.00844217	2.5568e-4	0.0617623	0.00541562
chr3	78849850	78849950	1836002	0	-	0.36	(0.33,0.36]	chr3	188602	1026	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	2	392	2	4.51748	6.356764999999999	8.19605	1.95288e-4	1.93153e-4	0.00786695	0.00441241
chr17	55047154	55047254	6755829	0	+	0.36	(0.33,0.36]	chr17	681649	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	STXBP4	ENSG00000166263.13	ENST00000376352.6:ENST00000434978.6	protein_coding	protein_coding	protein_coding	protein_coding	0	130	2	5.9838	6.356669999999999	6.72954	0.0123642	1.75295e-4	0.0758857	0.00411175
chr3	13202925	13203025	1691171	0	-	0.58	(0.523,0.58]	chr3	176566	384	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	126	2	6.14951	6.35657	6.56363	0.00793972	1.79062e-4	0.0596361	0.00418549
chr11	70686604	70686704	5061145	0	-	0.54	(0.523,0.58]	chr11	492688	166	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	286	2	4.89568	6.356159999999999	7.81664	3.16525e-4	1.80282e-4	0.0101066	0.00419938
chr17	643593	643693	6823612	0	-	0.47	(0.45,0.485]	chr17	689804	104	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000680944.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000681830.1:ENST00000679959.1:ENST00000680114.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000570650.2:ENST00000679680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	127	2	6.34422	6.355945	6.36767	0.00618594	4.24458e-4	0.0519442	0.00777807
chr7	98122667	98122767	3423561	0	+	0.48	(0.45,0.485]	chr7	330518	150	INTRON	INTRON	LMTK2	ENSG00000164715.6	ENST00000297293.6	protein_coding	protein_coding	protein_coding	protein_coding	0	127	2	6.34422	6.355945	6.36767	0.00618594	4.24458e-4	0.0519442	0.00777807
chr15	84766611	84766711	6174163	0	+	0.5	(0.485,0.523]	chr15	607320	14	INTRON	INTRON	ZNF592	ENSG00000166716.10	ENST00000560079.7	protein_coding	protein_coding	protein_coding	protein_coding	0	126	2	6.33317	6.3548	6.37643	0.0052506	3.65589e-4	0.0476984	0.00700609
chr17	6624506	6624580	6845649	0	-	0.486486	(0.485,0.523]	chr17	693231	1	SS5_PROX	SS5_PROX:INTRON	KIAA0753	ENSG00000198920.11	ENST00000361413.8:ENST00000570790.5:ENST00000572370.5:ENST00000572235.1:ENST00000576823.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	126	2	6.33317	6.3548	6.37643	0.0052506	3.65589e-4	0.0476984	0.00700609
chr17	3824375	3824469	6838730	0	-	0.319149	(0.29,0.33]	chr17	691919	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NCBP3	ENSG00000074356.17	ENST00000389005.6:ENST00000574911.5:ENST00000575815.5:ENST00000577169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	456	2	4.7598	6.354605	7.94941	7.89008e-4	2.8435e-6	0.0167035	2.11776e-4
chr1	2118701	2118801	3797	0	+	0.51	(0.485,0.523]	chr1	936	20	INTRON	INTRON	PRKCZ	ENSG00000067606.17	ENST00000378567.8:ENST00000468310.5:ENST00000466651.5:ENST00000400921.6:ENST00000495347.5:ENST00000461106.6:ENST00000461465.5:ENST00000470596.5:ENST00000496325.5:ENST00000481140.5:ENST00000482686.5:ENST00000486681.5:ENST00000470986.5:ENST00000470511.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	127	2	6.2314	6.3545	6.4776	0.00436205	4.86354e-4	0.0427656	0.00857996
chr20	50538374	50538474	7493761	0	+	0.44	(0.419,0.45]	chr20	781416	274	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	0	131	2	6.1854	6.35449	6.52358	0.00689831	0.00100635	0.0553728	0.0142602
chr2	233176174	233176272	1058395	0	+	0.428571	(0.419,0.45]	chr2	115144	47	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493632.5:ENST00000465281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	129	2	6.23755	6.354419999999999	6.47129	0.0110181	4.80774e-4	0.0708586	0.00851282
chr3	186584589	186584683	1649774	0	+	0.425532	(0.419,0.45]	chr3	173460	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DNAJB11	ENSG00000090520.12	ENST00000439351.5:ENST00000495390.2:ENST00000464877.2:ENST00000680338.1:ENST00000265028.8:ENST00000681475.1:ENST00000681543.1:ENST00000679794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	129	2	6.23755	6.354419999999999	6.47129	0.0110181	4.80774e-4	0.0708586	0.00851282
chr20	58694792	58694892	7498631	0	+	0.47	(0.45,0.485]	chr20	782001	2	SS5_PROX	SS5_PROX:INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	137	2	5.6833	6.35399	7.02468	0.0195193	5.97847e-5	0.0955413	0.00186524
chr3	4007478	4007578	1673225	0	-	0.44	(0.419,0.45]	chr3	175305	1796	INTRON	INTRON	SUMF1	ENSG00000144455.14	ENST00000448413.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	300	2	4.92014	6.353435	7.78673	7.38434e-4	2.80004e-4	0.0160522	0.00578259
chr2	175663655	175663755	959983	0	+	0.49	(0.485,0.523]	chr2	105443	687	INTRON	INTRON	ENSG00000289349	ENSG00000289349.1	ENST00000692740.1:ENST00000685522.1	lncRNA	lncRNA	lncRNA	lncRNA	2	386	2	4.43443	6.35248	8.27053	1.88593e-4	1.21273e-4	0.00611152	0.00435614
chr4	78058085	78058185	2065871	0	+	0.51	(0.485,0.523]	chr4	211126	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FRAS1	ENSG00000138759.20	ENST00000512123.4:ENST00000682513.1:ENST00000684159.1:ENST00000508900.2:ENST00000325942.11:ENST00000502446.6:ENST00000508909.5:ENST00000683711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	304	2	6.00965	6.352265	6.69488	0.00290687	5.57389e-6	0.0342042	3.41149e-4
chr1	43560918	43561017	107048	0	+	0.626263	(0.58,1]	chr1	13192	66	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	123	2	6.1825	6.35224	6.52198	0.00186556	2.66047e-4	0.0269723	0.00556524
chr14	104720385	104720483	5925630	0	+	0.622449	(0.58,1]	chr14	579884	17	UTR3	UTR3:EXON_MRNA	INF2	ENSG00000203485.14	ENST00000330634.11:ENST00000392634.9:ENST00000675207.1:ENST00000675638.1	protein_coding	protein_coding	protein_coding	protein_coding	0	139	2	5.67642	6.352165	7.02791	0.00117039	6.18479e-4	0.0157899	0.0145945
chr2	63985616	63985716	1166694	0	-	0.41	(0.39,0.419]	chr2	127344	12	INTRON	INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9	protein_coding	protein_coding	protein_coding	protein_coding	0	135	2	5.96596	6.352125	6.73829	0.00411485	0.00156652	0.0414433	0.0194594
chr15	58886178	58886278	6119574	0	+	0.37	(0.36,0.39]	chr15	602130	162	INTRON	INTRON	RNF111	ENSG00000157450.16	ENST00000559757.1	protein_coding	protein_coding	protein_coding	protein_coding	0	128	2	6.31302	6.35211	6.3912	0.00834137	5.20645e-4	0.0613342	0.00899129
chr19	2440820	2440920	7309594	0	-	0.55	(0.523,0.58]	chr19	753890	19	INTRON	INTRON	LMNB2	ENSG00000176619.13	ENST00000325327.4	protein_coding	protein_coding	protein_coding	protein_coding	0	126	2	6.28679	6.35206	6.41733	0.00490887	3.97355e-4	0.0457614	0.00741985
chr6	131717272	131717372	3007706	0	+	0.42	(0.419,0.45]	chr6	294103	233	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000414305.5:ENST00000357639.8:ENST00000358229.6	protein_coding	protein_coding	protein_coding	protein_coding	1	315	2	4.68882	6.3518099999999995	8.0148	5.28169e-4	4.82909e-4	0.0127255	0.00907271
chr5	648416	648515	2378766	0	+	0.545455	(0.523,0.58]	chr5	237646	1	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	275	2	5.55178	6.351694999999999	7.15161	0.0012128	2.33408e-5	0.0210863	9.38922e-4
chr3	52972753	52972853	1782645	0	-	0.51	(0.485,0.523]	chr3	185809	31	INTRON	INTRON	SFMBT1	ENSG00000163935.14	ENST00000394752.8:ENST00000482396.5:ENST00000483069.5:ENST00000497586.5:ENST00000470575.5:ENST00000474837.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	127	2	6.0218	6.351285	6.68077	0.00985907	1.33825e-4	0.0670775	0.00338739
chr2	239282276	239282376	1391531	0	-	0.44	(0.419,0.45]	chr2	148740	307	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	320	2	5.90909	6.35117	6.79325	0.00437084	1.60208e-5	0.0428189	7.1852e-4
chr22	48703036	48703135	7751298	0	+	0.494949	(0.485,0.523]	chr22	812283	93	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	141	2	5.73251	6.351035	6.96956	0.00184599	0.00171649	0.025659	0.0217471
chr13	113021044	113021144	5655835	0	+	0.34	(0.33,0.36]	chr13	555145	58	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	127	2	6.32291	6.350785	6.37866	0.00694591	4.63001e-4	0.0553908	0.00825119
chr19	19430979	19431079	7226992	0	+	0.47	(0.45,0.485]	chr19	739816	26	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6:ENST00000432704.5:ENST00000404158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	281	2	5.53397	6.350745	7.16752	0.0014116	3.08966e-5	0.0229261	0.00115425
chr7	129267126	129267226	3475870	0	+	0.38	(0.36,0.39]	chr7	335957	413	INTRON	INTRON	AHCYL2	ENSG00000158467.17	ENST00000325006.8:ENST00000446544.6	protein_coding	protein_coding	protein_coding	protein_coding	1	289	2	5.46424	6.35074	7.23724	0.00162449	5.25738e-5	0.0249683	0.00170356
chr7	6701209	6701307	3542725	0	-	0.418367	(0.39,0.419]	chr7	342318	4	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	0	128	2	6.19949	6.35036	6.50123	0.0103045	3.91245e-4	0.0684871	0.00735482
chr12	132954646	132954746	5542078	0	-	0.6	(0.58,1]	chr12	547064	60	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	122	2	6.23832	6.35022	6.46212	0.00211728	2.24165e-4	0.028892	0.00490779
chr17	77350499	77350599	6803864	0	+	0.5	(0.485,0.523]	chr17	686742	263	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	134	2	5.90769	6.35003	6.79237	0.00241519	0.0011708	0.0309229	0.0157899
chr2	152490455	152490555	927016	0	+	0.47	(0.45,0.485]	chr2	103058	1544	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	0	127	2	6.0913	6.34981	6.60832	0.00998516	2.02062e-4	0.0673647	0.00457229
chr6	126153834	126153934	3004361	0	+	0.4	(0.39,0.419]	chr6	293834	376	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000648977.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	130	2	5.99963	6.349745	6.69986	0.0142473	2.27791e-4	0.0817691	0.00496195
chr21	37366962	37367057	7618968	0	+	0.778947	(0.58,1]	chr21	796005	3	UTR5	UTR5:EXON_MRNA:INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1	protein_coding	protein_coding	protein_coding	protein_coding	0	125	2	6.06394	6.349345	6.63475	0.00146621	3.80904e-4	0.023492	0.00721291
chr19	16131911	16132011	7216458	0	+	0.52	(0.485,0.523]	chr19	737378	3	SS3_PROX	SS3_PROX:INTRON	RAB8A	ENSG00000167461.12	ENST00000300935.8:ENST00000586682.1:ENST00000592971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	131	2	6.00341	6.349145	6.69488	0.00290687	9.07333e-4	0.0342042	0.0132726
chr18	13589839	13589938	7026491	0	+	0.626263	(0.58,1]	chr18	717646	40	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000677744.1:ENST00000593236.1:ENST00000678400.1:ENST00000586207.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	132	2	5.82964	6.34879	6.86794	8.82366e-4	7.58111e-4	0.0176886	0.0117078
chr8	30419352	30419452	3788513	0	+	0.52	(0.485,0.523]	chr8	364885	210	INTRON	INTRON	RBPMS	ENSG00000157110.16	ENST00000320203.8:ENST00000339877.8:ENST00000287771.9:ENST00000397323.9:ENST00000517860.5:ENST00000520161.5:ENST00000523115.5:ENST00000519647.5:ENST00000521816.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	151	2	5.53308	6.348660000000001	7.16424	0.00304306	0.0011719	0.0306636	0.0206836
chr19	3528907	3529005	7191587	0	+	0.561224	(0.523,0.58]	chr19	732249	7	INTRON	INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	128	2	6.1255	6.348605	6.57171	0.00369199	6.23263e-4	0.0389784	0.0101764
chr19	4334742	4334841	7312818	0	-	0.545455	(0.523,0.58]	chr19	754660	3	INTRON	INTRON	STAP2	ENSG00000178078.12	ENST00000594605.6:ENST00000600324.5:ENST00000599736.5:ENST00000601482.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	136	2	5.84373	6.34859	6.85345	0.00216679	0.00133116	0.0292299	0.0173248
chr12	132780497	132780597	5540256	0	-	0.5	(0.485,0.523]	chr12	546770	3	SS5_PROX	SS5_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	125	2	6.24485	6.34795	6.45105	0.00665813	2.61322e-4	0.0540577	0.00551565
chr21	41337877	41337977	7621685	0	+	0.4	(0.39,0.419]	chr21	796324	1	SS3_PROX	SS3_PROX:INTRON	FAM3B	ENSG00000183844.17	ENST00000479810.6:ENST00000518236.1:ENST00000357985.7:ENST00000398647.7:ENST00000398652.7:ENST00000398646.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	140	2	5.63585	6.3476	7.05935	0.025023	8.30081e-5	0.10758	0.00237656
chr6	16329369	16329469	3100126	0	-	0.49	(0.485,0.523]	chr6	300842	5	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8	protein_coding	protein_coding	protein_coding	protein_coding	0	128	2	6.12191	6.347025	6.57214	0.0036605	6.58016e-4	0.0389784	0.0106077
chr8	143607232	143607314	4097294	0	-	0.597561	(0.58,1]	chr8	389389	1	SS3_PROX	SS3_PROX:INTRON	PYCR3	ENSG00000104524.14	ENST00000495276.6:ENST00000220966.10:ENST00000447926.6:ENST00000433751.5:ENST00000377579.7:ENST00000462036.5:ENST00000482616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	124	2	5.89541	6.34693	6.79845	0.0066708	3.72743e-5	0.0540577	0.00131851
chr2	238351745	238351842	1073446	0	+	0.494845	(0.485,0.523]	chr2	116386	20	INTRON	INTRON	TRAF3IP1	ENSG00000204104.12	ENST00000391993.7:ENST00000373327.5:ENST00000462122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	125	2	6.31214	6.346815	6.38149	0.00589975	3.18797e-4	0.0506158	0.00634142
chr2	235629213	235629313	1063890	0	+	0.45	(0.419,0.45]	chr2	115656	1043	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	310	2	4.73243	6.34675	7.96107	5.33958e-4	4.69186e-4	0.0134768	0.00833075
chr11	129845635	129845735	4965071	0	+	0.28	[0,0.29]	chr11	479911	170	INTRON	INTRON	TMEM45B	ENSG00000151715.8	ENST00000281441.8:ENST00000527754.1:ENST00000529381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	129	2	5.96004	6.34631	6.73258	0.00134158	8.12684e-4	0.0223927	0.0123039
chr7	74495807	74495907	3391785	0	+	0.56	(0.523,0.58]	chr7	327343	413	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	1	271	2	5.36784	6.346165	7.32449	8.60444e-4	4.18946e-5	0.0174691	0.00145043
chr15	65160627	65160726	6302290	0	-	0.373737	(0.36,0.39]	chr15	621224	15	INTRON	INTRON	CLPX	ENSG00000166855.9	ENST00000300107.7:ENST00000559152.5:ENST00000558958.1:ENST00000558103.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	130	2	6.14074	6.3459900000000005	6.55124	0.0055566	0.0010006	0.049265	0.0142243
chr21	29047996	29048084	7602500	0	+	0.397727	(0.39,0.419]	chr21	794359	3	INTRON	INTRON	USP16	ENSG00000156256.15	ENST00000399975.7:ENST00000334352.8:ENST00000474835.5:ENST00000399976.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	128	2	6.2956	6.345555	6.39551	0.00743138	6.75278e-4	0.057548	0.010811
chr6	43533253	43533352	3136610	0	-	0.40404	(0.39,0.419]	chr6	306236	13	INTRON	INTRON	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000398835.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	128	2	6.2956	6.345555	6.39551	0.00743138	6.75278e-4	0.057548	0.010811
chr18	48602937	48603037	7057294	0	+	0.45	(0.419,0.45]	chr18	720287	622	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1	protein_coding	protein_coding	protein_coding	protein_coding	0	130	2	6.01834	6.345515000000001	6.67269	0.015582500000000001	2.80959e-4	0.0849828	0.00578259
chr2	235802589	235802688	1065636	0	+	0.454545	(0.45,0.485]	chr2	115712	27	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	129	2	6.10862	6.345085	6.58155	0.00421879	8.0459e-4	0.0421633	0.012189
chr2	231808672	231808769	1051054	0	+	0.360825	(0.36,0.39]	chr2	114511	2	UTR3	UTR3:EXON_MRNA	COPS7B	ENSG00000144524.18	ENST00000611614.4:ENST00000620578.4:ENST00000413197.5:ENST00000350033.8:ENST00000412922.6:ENST00000410017.5:ENST00000373608.7:ENST00000461350.5:ENST00000488111.1:ENST00000449174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	129	2	6.19443	6.344849999999999	6.49527	0.00611969	8.7159e-4	0.0517362	0.0128912
chr12	132742176	132742272	5539922	0	-	0.354167	(0.33,0.36]	chr12	546701	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ANKLE2	ENSG00000176915.15	ENST00000357997.10:ENST00000539605.5:ENST00000439231.6:ENST00000538591.5:ENST00000535036.5:ENST00000545623.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	281	2	5.31207	6.34484	7.37761	9.90419e-4	7.1918e-5	0.0189228	0.0021465
chr9	124489284	124489384	4402615	0	-	0.55	(0.523,0.58]	chr9	419805	59	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	0	127	2	6.15367	6.344155	6.53464	0.00395533	5.76607e-4	0.0406092	0.00963379
chrX	131824832	131824929	8110049	0	-	0.402062	(0.39,0.419]	chrX	845353	12	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	FIRRE	ENSG00000213468.7	ENST00000649541.1:ENST00000663405.1:ENST00000665076.1:ENST00000654978.1:ENST00000427391.2:ENST00000668308.1:ENST00000658376.1:ENST00000650184.1:ENST00000653136.1:ENST00000657242.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	131	2	6.08441	6.34408	6.60375	0.00520388	0.00116356	0.0475031	0.0157899
chr10	103835818	103835918	4758463	0	-	0.53	(0.523,0.58]	chr10	454819	341	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	0	125	2	6.312	6.344	6.376	0.00529293	3.69994e-4	0.047841	0.00704866
chr6	143270821	143270921	3015539	0	+	0.44	(0.419,0.45]	chr6	294885	804	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000275235.8:ENST00000458219.1	protein_coding	protein_coding	protein_coding	protein_coding	0	134	2	5.82136	6.343635000000001	6.86591	0.0210659	1.65832e-4	0.0996078	0.00396002
chr12	122095462	122095562	5343543	0	+	0.43	(0.419,0.45]	chr12	521864	158	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	128	2	6.28205	6.343500000000001	6.40495	0.0102557	5.72149e-4	0.0684871	0.00960229
chr6	1798161	1798261	3080854	0	-	0.35	(0.33,0.36]	chr6	299482	552	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	294	2	5.72776	6.343145	6.95853	0.00219948	2.04131e-5	0.0295736	8.51538e-4
chrX	31201186	31201285	8003399	0	-	0.565657	(0.523,0.58]	chrX	836856	52	INTRON	INTRON	DMD	ENSG00000198947.18	ENST00000378723.7:ENST00000681989.1:ENST00000358062.6:ENST00000357033.9:ENST00000619831.5:ENST00000378677.6:ENST00000359836.5:ENST00000378707.7:ENST00000541735.5:ENST00000343523.7:ENST00000684130.1:ENST00000680961.1:ENST00000682238.1:ENST00000683675.1:ENST00000680355.1:ENST00000682322.1:ENST00000682600.1:ENST00000680162.2:ENST00000679641.1:ENST00000680557.1:ENST00000620040.5:ENST00000680768.2:ENST00000683709.1:ENST00000682769.1:ENST00000378702.8:ENST00000474231.5:ENST00000361471.8:ENST00000683509.1:ENST00000378680.6:ENST00000681153.1:ENST00000683957.1:ENST00000378705.3:ENST00000681654.1:ENST00000681334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	126	2	6.2084	6.342785	6.47717	0.00439843	4.95211e-4	0.0429852	0.00865935
chr12	120983764	120983863	5340968	0	+	0.585859	(0.58,1]	chr12	521546	43	INTRON	INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000400024.6:ENST00000560968.5:ENST00000402929.5:ENST00000535955.5:ENST00000538626.2:ENST00000538646.5:ENST00000541924.5:ENST00000544574.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	122	2	6.1825	6.3424	6.5023	0.00194503	2.66047e-4	0.0275844	0.00556524
chr19	2440721	2440820	7309593	0	-	0.424242	(0.419,0.45]	chr19	753890	18	INTRON	INTRON	LMNB2	ENSG00000176619.13	ENST00000325327.4	protein_coding	protein_coding	protein_coding	protein_coding	0	129	2	6.23716	6.34232	6.44748	0.00782663	8.82327e-4	0.0592048	0.0129974
chr21	8810766	8810866	7637423	0	-	0.55	(0.523,0.58]	chr21	798930	32	INTRON	INTRON	ENSG00000286033	ENSG00000286033.1	ENST00000651312.1	lncRNA	lncRNA	lncRNA	lncRNA	0	130	2	6.00701	6.342280000000001	6.67755	0.00302793	8.61362e-4	0.0350226	0.0127848
chr13	113033174	113033272	5655961	0	+	0.663265	(0.58,1]	chr13	555157	63	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486806.1:ENST00000473345.5	protein_coding	protein_coding	protein_coding	protein_coding	0	120	2	6.28914	6.341514999999999	6.39389	0.00303562	1.38027e-4	0.0350226	0.00347229
chr4	1176573	1176672	2179442	0	-	0.373737	(0.36,0.39]	chr4	220858	35	INTRON	INTRON	SPON2	ENSG00000159674.12	ENST00000617421.4:ENST00000515004.5:ENST00000502483.5:ENST00000509233.5:ENST00000511679.5:ENST00000511672.5:ENST00000506266.1:ENST00000504871.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	342	2	6.16825	6.34121	6.51417	0.00592387	6.25007e-6	0.0506158	3.69084e-4
chr2	45464993	45465093	1138030	0	-	0.49	(0.485,0.523]	chr2	124590	170	INTRON	INTRON	SRBD1	ENSG00000068784.13	ENST00000263736.5:ENST00000475073.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	126	2	6.2048	6.3412	6.4776	0.00436205	5.23665e-4	0.0427656	0.0090184
chr3	44994802	44994901	1457584	0	+	0.494949	(0.485,0.523]	chr3	155632	48	INTRON	INTRON	EXOSC7	ENSG00000075914.13	ENST00000461361.5:ENST00000482004.5:ENST00000265564.8:ENST00000468667.5:ENST00000467846.5:ENST00000491476.5:ENST00000481405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	126	2	6.2048	6.3412	6.4776	0.00436205	5.23665e-4	0.0427656	0.0090184
chr6	154778743	154778842	3044567	0	+	0.414141	(0.39,0.419]	chr6	296638	3	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	347	2	4.92504	6.340885	7.75673	0.00218812	1.06879e-5	0.029444	5.39197e-4
chr10	18563863	18563962	4642367	0	-	0.40404	(0.39,0.419]	chr10	443321	115	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	127	2	6.24541	6.34065	6.43589	0.00955236	4.66094e-4	0.0658012	0.00828434
chr14	94309138	94309235	6046264	0	-	0.412371	(0.39,0.419]	chr14	593049	26	INTRON	INTRON	SERPINA6	ENSG00000170099.6	ENST00000341584.4:ENST00000555056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	128	2	6.24563	6.34065	6.43567	0.00694268	7.69256e-4	0.0553898	0.0118331
chr11	791050	791146	4969401	0	-	0.635417	(0.58,1]	chr11	480765	7	UTR3	UTR3:EXON_MRNA	SLC25A22	ENSG00000177542.11	ENST00000628067.3:ENST00000320230.9	protein_coding	protein_coding	protein_coding	protein_coding	0	120	2	6.16945	6.340635000000001	6.51182	0.00387582	9.48877e-5	0.0401256	0.00262417
chr7	112061722	112061822	3691125	0	-	0.4	(0.39,0.419]	chr7	354969	572	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	127	2	6.26783	6.340635	6.41344	0.00920367	4.94825e-4	0.0644228	0.00865935
chr13	112818006	112818105	5653827	0	+	0.444444	(0.419,0.45]	chr13	554938	14	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000459908.5:ENST00000418678.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	291	2	5.44192	6.340605	7.23929	0.00200016	6.35148e-5	0.0280981	0.00195296
chr21	35942660	35942760	7666390	0	-	0.44	(0.419,0.45]	chr21	801118	778	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000475045.6	protein_coding	protein_coding	protein_coding	protein_coding	0	151	2	5.57051	6.34	7.10949	0.00441471	0.00251897	0.0393688	0.031696
chr18	39503681	39503780	7149434	0	-	0.414141	(0.39,0.419]	chr18	727068	678	INTRON	INTRON	MIR924HG	ENSG00000267374.3	ENST00000670992.1:ENST00000591629.2:ENST00000662708.1:ENST00000663592.1:ENST00000665749.1:ENST00000668737.1:ENST00000669590.1:ENST00000667816.1:ENST00000666361.1:ENST00000671441.1:ENST00000668052.1:ENST00000669399.1:ENST00000666611.1:ENST00000667009.1:ENST00000666148.1:ENST00000667500.1:ENST00000658829.1:ENST00000665844.1:ENST00000670388.1:ENST00000653594.1:ENST00000660099.1:ENST00000655721.1:ENST00000655349.1:ENST00000665416.1:ENST00000655720.1:ENST00000663128.1:ENST00000668391.1:ENST00000652839.1:ENST00000654975.1:ENST00000667895.1:ENST00000670943.1:ENST00000670383.1:ENST00000652860.1:ENST00000664919.1:ENST00000660405.1:ENST00000667722.1:ENST00000653742.1:ENST00000666181.1:ENST00000654966.1:ENST00000658177.1:ENST00000670121.1:ENST00000669520.1	lncRNA	lncRNA	lncRNA	lncRNA	0	127	2	6.31166	6.339555	6.36745	0.00855563	5.58995e-4	0.0621561	0.00944382
chr15	84568508	84568607	6343612	0	-	0.40404	(0.39,0.419]	chr15	625369	47	INTRON	INTRON	UBE2Q2P1	ENSG00000189136.9	ENST00000354771.8:ENST00000339094.5:ENST00000561403.6:ENST00000558251.5:ENST00000559871.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	139	2	5.80276	6.339395	6.87603	0.00322454	0.00233691	0.0362983	0.0257208
chr22	50235320	50235420	7827214	0	-	0.61	(0.58,1]	chr22	821200	14	INTRON	INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	120	2	6.33437	6.339119999999999	6.34387	0.00276493	1.61506e-4	0.0332418	0.00387712
chr19	34504346	34504446	7244312	0	+	0.51	(0.485,0.523]	chr19	741946	42	UTR3	UTR3:EXON_MRNA	WTIP	ENSG00000142279.13	ENST00000590071.7	protein_coding	protein_coding	protein_coding	protein_coding	0	129	2	6.03396	6.338755000000001	6.64355	0.00320229	8.35707e-4	0.0361639	0.012554
chr7	26720032	26720131	3556944	0	-	0.454545	(0.45,0.485]	chr7	343614	293	INTRON	INTRON	SKAP2	ENSG00000005020.13	ENST00000345317.7:ENST00000489977.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	131	2	5.99015	6.338125	6.6861	0.00348661	0.00110015	0.0379065	0.015136
chr7	36196193	36196293	3345417	0	+	0.46	(0.45,0.485]	chr7	323692	406	INTRON	INTRON	EEPD1	ENSG00000122547.11	ENST00000242108.9:ENST00000534978.1	protein_coding	protein_coding	protein_coding	protein_coding	0	131	2	5.99015	6.338125	6.6861	0.00348661	0.00110015	0.0379065	0.015136
chr10	76379118	76379218	4529968	0	+	0.54	(0.523,0.58]	chr10	432328	322	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593699.5:ENST00000372499.5:ENST00000496424.2:ENST00000598708.1:ENST00000488655.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	124	2	6.2672	6.337925	6.40865	0.00644151	2.80789e-4	0.0530091	0.00578259
chr17	7174289	7174373	6847812	0	-	0.714286	(0.58,1]	chr17	693452	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5	protein_coding	protein_coding	protein_coding	protein_coding	0	122	2	6.15376	6.337870000000001	6.52198	0.00186556	2.90409e-4	0.0269723	0.0059241
chr13	111185819	111185913	5651306	0	+	0.638298	(0.58,1]	chr13	554738	2	INTRON	INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000449979.5:ENST00000491775.5:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8:ENST00000467053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	120	2	6.11865	6.337535	6.55642	0.00429384	8.22236e-5	0.042386	0.00236215
chr10	44969164	44969264	4483220	0	+	0.53	(0.523,0.58]	chr10	428600	89	INTRON	INTRON	RASSF4	ENSG00000107551.21	ENST00000489171.5:ENST00000340258.10:ENST00000427758.5:ENST00000483709.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	124	2	6.19774	6.3374299999999995	6.47712	0.0072907	2.30436e-4	0.0567247	0.00498593
chr19	323335	323435	7303109	0	-	0.42	(0.419,0.45]	chr19	752407	93	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	128	2	6.28712	6.33738	6.38764	0.00863623	7.76382e-4	0.0623824	0.0118807
chr12	1698096	1698195	5155457	0	+	0.515152	(0.485,0.523]	chr12	500946	65	INTRON	INTRON	ADIPOR2	ENSG00000006831.10	ENST00000537545.1:ENST00000357103.5:ENST00000540974.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	126	2	6.1777	6.3373550000000005	6.49701	0.00420849	5.64449e-4	0.0421454	0.00950156
chr7	583417	583515	3523920	0	-	0.591837	(0.58,1]	chr7	340376	37	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000400758.6:ENST00000430040.5	protein_coding	protein_coding	protein_coding	protein_coding	1	297	2	4.93962	6.337255	7.73489	8.1793e-4	1.45603e-6	0.0170128	1.34292e-4
chr2	233151763	233151862	1058137	0	+	0.373737	(0.36,0.39]	chr2	115096	38	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6	protein_coding	protein_coding	protein_coding	protein_coding	0	129	2	5.97395	6.337195	6.70044	0.0145438	2.25359e-4	0.0823572	0.00492301
chr1	17588579	17588679	54065	0	+	0.48	(0.45,0.485]	chr1	5464	1	SS5_PROX	SS5_PROX:INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5	protein_coding	protein_coding	protein_coding	protein_coding	3	452	2	4.32516	6.337185	8.34921	1.4873e-4	1.33759e-4	0.00642129	0.00367368
chr6	169651331	169651429	3304377	0	-	0.459184	(0.45,0.485]	chr6	319869	17	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	126	2	6.06569	6.3370049999999996	6.60832	0.0104281	2.02062e-4	0.0687558	0.00457229
chr17	81148591	81148691	6982988	0	-	0.63	(0.58,1]	chr17	713268	137	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	121	2	6.01134	6.33679	6.66224	0.00531709	5.8343e-5	0.047841	0.00183149
chr7	21446010	21446110	3327425	0	+	0.38	(0.36,0.39]	chr7	322165	148	INTRON	INTRON	SP4	ENSG00000105866.15	ENST00000432066.2:ENST00000448246.1:ENST00000222584.8:ENST00000649633.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	129	2	6.14074	6.33678	6.53282	0.00573632	0.0010006	0.0499133	0.0142243
chr14	63390329	63390428	5991432	0	-	0.454545	(0.45,0.485]	chr14	587757	2	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556150.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	126	2	6.24422	6.336715	6.42921	0.00554658	5.58345e-4	0.0492398	0.00944382
chr8	133296596	133296638	4084295	0	-	0.714286	(0.58,1]	chr8	388369	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000520943.5:ENST00000521544.5:ENST00000523892.5:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	496	2	6.15376	6.33659	6.51942	2.90409e-4	1.90014e-5	0.0059241	0.00250658
chr19	49796880	49796978	7283451	0	+	0.530612	(0.523,0.58]	chr19	748939	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	AP2A1	ENSG00000196961.13	ENST00000354293.10:ENST00000600199.1:ENST00000359032.9:ENST00000597774.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	124	2	6.31171	6.336425	6.36114	0.00594629	3.21725e-4	0.0506158	0.0063695
chr2	149614332	149614432	920089	0	+	0.43	(0.419,0.45]	chr2	102788	199	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	0	137	2	5.6954	6.3360199999999995	6.97664	0.0254103	1.22002e-4	0.108573	0.00318856
chr20	33676441	33676537	7546195	0	-	0.541667	(0.523,0.58]	chr20	787683	11	UTR3	UTR3:EXON_MRNA	E2F1	ENSG00000101412.13	ENST00000343380.6	protein_coding	protein_coding	protein_coding	protein_coding	0	130	2	5.78924	6.335875	6.88251	0.0147166	6.90788e-5	0.0826843	0.00208248
chr7	213167	213267	3305786	0	+	0.51	(0.485,0.523]	chr7	320161	38	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	124	2	6.29006	6.335775	6.38149	0.00613935	3.18797e-4	0.0517628	0.00634142
chr19	4334344	4334444	7312814	0	-	0.45	(0.419,0.45]	chr19	754659	3	SS3_PROX	SS3_PROX:INTRON	STAP2	ENSG00000178078.12	ENST00000594605.6:ENST00000600324.5:ENST00000599736.5:ENST00000601482.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	129	2	6.1854	6.335715	6.48603	0.00734278	0.00100635	0.0570055	0.0142602
chr7	105702526	105702626	3669944	0	-	0.45	(0.419,0.45]	chr7	353945	110	INTRON	INTRON	ATXN7L1	ENSG00000146776.15	ENST00000419735.8	protein_coding	protein_coding	protein_coding	protein_coding	0	128	2	6.09518	6.33534	6.5755	0.0138177	3.64701e-4	0.0803169	0.00699922
chr1	29236917	29237017	78377	0	+	0.54	(0.523,0.58]	chr1	8913	2	SS5_PROX	SS5_PROX:INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2	protein_coding	protein_coding	protein_coding	protein_coding	0	126	2	5.96674	6.3351500000000005	6.70356	0.0109075	1.18392e-4	0.0707085	0.00311099
chr17	17697742	17697842	6689012	0	+	0.53	(0.523,0.58]	chr17	671338	128	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	124	2	6.33346	6.33512	6.33678	0.00571732	3.44853e-4	0.0498083	0.00672121
chrX	119237384	119237481	7943999	0	+	0.546392	(0.523,0.58]	chrX	831205	3	INTRON	INTRON	PGRMC1	ENSG00000101856.10	ENST00000535419.2:ENST00000217971.8	protein_coding	protein_coding	protein_coding	protein_coding	0	126	2	6.15367	6.334705	6.51574	0.00409625	5.76607e-4	0.0413652	0.00963379
chr16	84737938	84738036	6514209	0	+	0.520408	(0.485,0.523]	chr16	646283	41	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	131	2	5.94031	6.334215	6.72812	0.00272951	0.00107389	0.0331786	0.0148869
chr8	81719296	81719392	4009768	0	-	0.46875	(0.45,0.485]	chr8	383106	7	INTRON	INTRON	ZFAND1	ENSG00000104231.11	ENST00000220669.10:ENST00000523096.5:ENST00000522520.5:ENST00000519464.5:ENST00000521895.5:ENST00000521287.5:ENST00000523431.5:ENST00000520635.5:ENST00000519523.5:ENST00000517588.5:ENST00000520604.5:ENST00000523361.5:ENST00000521742.5:ENST00000517450.5:ENST00000518419.5:ENST00000520076.5:ENST00000524339.5:ENST00000517353.5:ENST00000519820.5:ENST00000521885.5:ENST00000520941.5:ENST00000523012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	126	2	6.2181	6.333629999999999	6.44916	0.00535292	5.99406e-4	0.0480663	0.00993857
chr2	163652304	163652404	1295485	0	-	0.4	(0.39,0.419]	chr2	139073	401	INTRON	INTRON	FIGN	ENSG00000182263.14	ENST00000409634.5:ENST00000333129.4:ENST00000482917.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	284	2	5.34296	6.3335349999999995	7.32411	0.00142783	7.57107e-5	0.0231443	0.00223036
chr6	158232603	158232703	3060841	0	+	0.49	(0.485,0.523]	chr6	297571	3	SS5_PROX	SS5_PROX:INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	453	2	4.69597	6.333355	7.97074	0.00100865	2.34708e-6	0.0191322	1.86023e-4
chr1	3471322	3471416	5822	0	+	0.659574	(0.58,1]	chr1	1229	14	INTRON	INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5	protein_coding	protein_coding	protein_coding	protein_coding	0	130	2	5.82964	6.333245	6.83685	9.44859e-4	7.58111e-4	0.0183873	0.0117078
chrX	152853106	152853206	7960343	0	+	0.53	(0.523,0.58]	chrX	833095	23	INTRON	INTRON	NSDHL	ENSG00000147383.11	ENST00000440023.5:ENST00000432467.1:ENST00000370274.8	protein_coding	protein_coding	protein_coding	protein_coding	0	125	2	6.2084	6.33295	6.4575	0.0045605	4.95211e-4	0.0438198	0.00865935
chr7	74495708	74495807	3391784	0	+	0.616162	(0.58,1]	chr7	327343	412	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	0	120	2	6.06599	6.33284	6.59969	0.00477081	7.15008e-5	0.0450109	0.00213784
chr3	66324257	66324356	1497496	0	+	0.444444	(0.419,0.45]	chr3	160479	184	INTRON	INTRON	SLC25A26	ENSG00000144741.19	ENST00000676754.1:ENST00000686511.1:ENST00000690634.1:ENST00000689520.1:ENST00000686445.1:ENST00000691582.1:ENST00000691166.1:ENST00000691461.1:ENST00000354883.11:ENST00000693385.1:ENST00000688696.1:ENST00000691525.1:ENST00000690560.1:ENST00000336733.10:ENST00000464350.6:ENST00000691603.1:ENST00000483224.5:ENST00000413054.5:ENST00000484768.1:ENST00000685460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	128	2	6.07002	6.332745	6.59547	0.0143746	3.45753e-4	0.0821732	0.00672667
chr7	105376850	105376950	3667867	0	-	0.29	[0,0.29]	chr7	353743	699	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	122	2	6.2512	6.33262	6.41404	0.00261415	3.56971e-4	0.0324396	0.00688785
chr1	43965007	43965100	110811	0	+	0.430108	(0.419,0.45]	chr1	13723	3	INTRON	INTRON	IPO13	ENSG00000117408.11	ENST00000372343.8	protein_coding	protein_coding	protein_coding	protein_coding	0	130	2	5.93719	6.3325949999999995	6.728	0.0176643	2.41873e-4	0.0909046	0.00518926
chr2	239277580	239277680	1391484	0	-	0.64	(0.58,1]	chr2	148740	260	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	120	2	6.26544	6.332545	6.39965	0.00241374	2.06156e-4	0.0309229	0.00461335
chr22	28445872	28445972	7779489	0	-	0.39	(0.36,0.39]	chr22	815741	29	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	0	127	2	6.07922	6.331895	6.58457	0.0122748	3.09569e-4	0.0755611	0.00622124
chr11	70803324	70803423	5062316	0	-	0.494949	(0.485,0.523]	chr11	492707	44	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5:ENST00000460048.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	124	2	6.3084	6.33186	6.35532	0.00545609	3.92049e-4	0.0486984	0.00735595
chr8	502789	502889	3931432	0	-	0.52	(0.485,0.523]	chr8	375980	78	INTRON	INTRON	TDRP	ENSG00000180190.13	ENST00000523656.5:ENST00000324079.11	protein_coding	protein_coding	protein_coding	protein_coding	0	124	2	6.3084	6.33186	6.35532	0.00545609	3.92049e-4	0.0486984	0.00735595
chr21	37403578	37403677	7619337	0	+	0.353535	(0.33,0.36]	chr21	796015	281	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	0	133	2	5.91404	6.33181	6.74958	0.00323839	0.00156051	0.0363368	0.0194067
chr17	15467259	15467359	6860107	0	-	0.49	(0.485,0.523]	chr17	695068	4	SS5_PROX	SS5_PROX:INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	125	2	6.0218	6.331715	6.64163	0.00985907	1.50187e-4	0.0670775	0.0036849
chr10	75469512	75469612	4520853	0	+	0.49	(0.485,0.523]	chr10	432249	179	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	706	2	5.9461	6.33146	6.71682	1.90428e-4	5.29106e-7	0.00778805	6.88313e-5
chr22	50681189	50681286	7754981	0	+	0.484536	(0.45,0.485]	chr22	812716	14	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	128	2	5.90167	6.33126	6.76085	0.0137135	1.3016e-4	0.0799457	0.00332369
chr16	619058	619158	6368584	0	+	0.62	(0.58,1]	chr16	628044	4	INTRON	INTRON	RAB40C	ENSG00000197562.10	ENST00000535977.5:ENST00000569575.5:ENST00000539661.5:ENST00000566290.5:ENST00000248139.8:ENST00000568586.5:ENST00000538492.5:ENST00000565511.5:ENST00000509637.6:ENST00000563109.1:ENST00000564703.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	123	2	6.06394	6.331035	6.59813	0.00158605	3.80904e-4	0.0245893	0.00721291
chr3	160541634	160541734	1951826	0	-	0.45	(0.419,0.45]	chr3	198455	44	INTRON	INTRON	KPNA4	ENSG00000186432.10	ENST00000334256.9:ENST00000676866.1:ENST00000676799.1:ENST00000678630.1:ENST00000676958.1:ENST00000678765.1:ENST00000483437.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	127	2	6.16812	6.330435	6.49275	0.0123115	4.54324e-4	0.0756356	0.00818426
chr11	72999889	72999989	5072551	0	-	0.38	(0.36,0.39]	chr11	493634	104	INTRON	INTRON	FCHSD2	ENSG00000137478.15	ENST00000409418.9:ENST00000311172.11:ENST00000409314.5:ENST00000458644.6:ENST00000409853.5:ENST00000422375.1	protein_coding	protein_coding	protein_coding	protein_coding	0	126	2	6.24677	6.3303899999999995	6.41401	0.00931845	4.90006e-4	0.0649153	0.00861813
chr6	56503496	56503596	3152656	0	-	0.28	[0,0.29]	chr6	307578	1	SS5_PROX	SS5_PROX:INTRON	DST	ENSG00000151914.22	ENST00000244364.10:ENST00000312431.10:ENST00000421834.6:ENST00000680361.1:ENST00000370788.6:ENST00000520645.6:ENST00000651790.1:ENST00000340834.10:ENST00000361203.7	protein_coding	protein_coding	protein_coding	protein_coding	0	121	2	6.25925	6.33028	6.40131	0.00358096	2.30221e-4	0.0384019	0.00498593
chr21	43974073	43974172	7625532	0	+	0.373737	(0.36,0.39]	chr21	796959	22	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000398063.6:ENST00000398058.5:ENST00000546158.1:ENST00000479117.5:ENST00000467358.5:ENST00000484865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	133	2	5.76893	6.33014	6.89135	0.0200694	1.32362e-4	0.0971995	0.00337119
chr7	47477205	47477305	3588580	0	-	0.51	(0.485,0.523]	chr7	346123	241	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	124	2	6.10004	6.33003	6.56002	0.00860355	1.90696e-4	0.0623467	0.0043642
chr18	13262445	13262545	7023185	0	+	0.69	(0.58,1]	chr18	717514	431	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000590371.5:ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000590115.1:ENST00000677055.1:ENST00000399848.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	119	2	6.1942	6.33	6.4658	0.00368616	1.09908e-4	0.0389784	0.00294443
chr1	147243987	147244086	232454	0	+	0.363636	(0.36,0.39]	chr1	25788	4	INTRON	INTRON	CHD1L	ENSG00000131778.20	ENST00000652587.1:ENST00000652616.1:ENST00000652494.1:ENST00000651207.1:ENST00000650721.1:ENST00000651226.1:ENST00000652161.1:ENST00000651510.1:ENST00000361293.10:ENST00000652278.1:ENST00000369259.4:ENST00000467213.5:ENST00000369258.8:ENST00000622533.4:ENST00000651410.1:ENST00000652486.1:ENST00000652346.1:ENST00000651407.1:ENST00000650828.1:ENST00000651070.1:ENST00000650714.1:ENST00000651420.1:ENST00000652357.1:ENST00000488864.5:ENST00000652188.1:ENST00000651820.1:ENST00000651231.1:ENST00000492728.1:ENST00000651206.1:ENST00000431239.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	126	2	6.20085	6.329715	6.45858	0.0100561	4.35017e-4	0.0677306	0.007918
chr2	111421509	111421609	1252851	0	-	0.53	(0.523,0.58]	chr2	134896	432	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1	lncRNA	lncRNA	lncRNA	lncRNA	0	125	2	5.99431	6.32963	6.66495	0.0104033	1.32802e-4	0.0686837	0.00337193
chr16	75234299	75234388	6644449	0	-	0.651685	(0.58,1]	chr16	664405	4	SS3_PROX	SS3_PROX:INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000566982.1:ENST00000563038.5:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	120	2	6.23832	6.329549999999999	6.42078	0.00230938	2.24165e-4	0.0302623	0.00490779
chr9	124491906	124491995	4402642	0	-	0.606742	(0.58,1]	chr9	419811	3	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	2	615	2	5.97387	6.329515	6.68516	7.19781e-5	1.87257e-7	0.00475775	3.50603e-5
chr17	80024701	80024801	6982163	0	-	0.46	(0.45,0.485]	chr17	713081	107	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7	protein_coding	protein_coding	protein_coding	protein_coding	0	125	2	6.0913	6.32941	6.56752	0.00998516	2.2698e-4	0.0673647	0.00495264
chr10	119894844	119894944	4597226	0	+	0.41	(0.39,0.419]	chr10	439450	15	INTRON	INTRON	SEC23IP	ENSG00000107651.14	ENST00000369075.8:ENST00000470478.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	126	2	6.22263	6.32926	6.43589	0.00991891	4.66094e-4	0.0671959	0.00828434
chr3	66383890	66383990	1815931	0	-	0.53	(0.523,0.58]	chr3	187347	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LRIG1	ENSG00000144749.14	ENST00000273261.8:ENST00000383703.3:ENST00000496559.6:ENST00000495037.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	125	2	6.18129	6.32923	6.47717	0.00439843	5.34061e-4	0.0429852	0.0091384
chr6	131837183	131837283	3008313	0	+	0.41	(0.39,0.419]	chr6	294175	107	INTRON	INTRON	ENPP1	ENSG00000197594.14	ENST00000486853.1:ENST00000647893.1:ENST00000513998.5:ENST00000650507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	126	2	6.26783	6.32923	6.39063	0.00920367	5.25726e-4	0.0644228	0.00903907
chr1	12584049	12584149	402443	0	-	0.62	(0.58,1]	chr1	46222	30	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	626	2	6.25497	6.329025	6.40308	3.63552e-5	5.33336e-7	0.0033235	6.93279e-5
chr21	35744735	35744835	7664410	0	-	0.38	(0.36,0.39]	chr21	801112	895	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000475045.6	protein_coding	protein_coding	protein_coding	protein_coding	0	150	2	5.53855	6.328659999999999	7.11877	0.00432809	0.00202009	0.0389438	0.0283135
chr2	77450271	77450371	1202527	0	-	0.41	(0.39,0.419]	chr2	130007	7010	INTRON	INTRON	LRRTM4	ENSG00000176204.14	ENST00000409884.6:ENST00000409911.5:ENST00000409093.1	protein_coding	protein_coding	protein_coding	protein_coding	0	224	2	4.72276	6.328565	7.93437	0.0238104	4.51015e-4	0.111436	0.0121988
chr1	62266531	62266631	497492	0	-	0.53	(0.523,0.58]	chr1	59360	4	SS5_PROX	SS5_PROX:INTRON	KANK4	ENSG00000132854.19	ENST00000371153.9:ENST00000354381.3:ENST00000371150.5	protein_coding	protein_coding	protein_coding	protein_coding	0	131	2	5.72487	6.3285	6.93213	0.0163679	5.9384e-5	0.0875379	0.00185705
chr20	35393500	35393591	7553382	0	-	0.406593	(0.39,0.419]	chr20	788559	9	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6:ENST00000495752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	133	2	5.93476	6.328455	6.72215	0.00423322	0.00169249	0.0422099	0.0204799
chr11	129238781	129238881	5144434	0	-	0.34	(0.33,0.36]	chr11	499903	466	INTRON	INTRON	ARHGAP32	ENSG00000134909.19	ENST00000525234.1	protein_coding	protein_coding	protein_coding	protein_coding	0	125	2	6.30116	6.328135	6.35511	0.00721369	4.93432e-4	0.0564903	0.00865935
chr3	136882491	136882591	1575552	0	+	0.41	(0.39,0.419]	chr3	167077	146	INTRON	INTRON	NCK1	ENSG00000158092.7	ENST00000481752.6:ENST00000288986.6:ENST00000491539.5:ENST00000485096.5:ENST00000476286.1:ENST00000478862.1:ENST00000460960.1:ENST00000488930.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	135	2	5.87027	6.327975	6.78568	0.00378521	0.00198333	0.0396337	0.0229039
chr7	158916676	158916774	3523156	0	+	0.418367	(0.39,0.419]	chr7	340293	20	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	127	2	6.21998	6.327825	6.43567	0.00694268	8.22163e-4	0.0553898	0.0124043
chr11	17863365	17863465	5013864	0	-	0.49	(0.485,0.523]	chr11	484589	4	SS5_PROX	SS5_PROX:INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528369.5:ENST00000531926.5:ENST00000531299.5:ENST00000528200.5:ENST00000529440.5:ENST00000524589.5:ENST00000529151.5:ENST00000532546.5:ENST00000525920.5:ENST00000532265.5:ENST00000533241.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	127	2	5.88115	6.32768	6.77421	0.012541	1.01398e-4	0.0761905	0.00276585
chr13	112526441	112526541	5752177	0	-	0.51	(0.485,0.523]	chr13	563914	1	SS5_PROX	SS5_PROX:INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000462580.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	124	2	6.07443	6.327645	6.58086	0.00899749	1.79455e-4	0.0637469	0.00418827
chr19	7162931	7163031	7323897	0	-	0.54	(0.523,0.58]	chr19	756787	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	INSR	ENSG00000171105.14	ENST00000341500.9:ENST00000302850.10:ENST00000598216.1:ENST00000600492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	131	2	5.91127	6.327645	6.74402	0.00267018	0.00111349	0.0327654	0.0152496
chr11	46099522	46099622	5030616	0	-	0.43	(0.419,0.45]	chr11	486583	69	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000689695.1:ENST00000685188.1:ENST00000532883.5:ENST00000524497.5:ENST00000693122.1:ENST00000529734.5:ENST00000529782.5:ENST00000688222.1:ENST00000690039.1:ENST00000533757.5:ENST00000525438.5:ENST00000692265.1:ENST00000527782.5:ENST00000532010.5:ENST00000528893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	136	2	5.86184	6.327545	6.79325	0.00437084	0.00223565	0.0428189	0.024843
chr3	31885214	31885314	1729443	0	-	0.39	(0.36,0.39]	chr3	179047	50	INTRON	INTRON	OSBPL10	ENSG00000144645.15	ENST00000396556.7:ENST00000438237.6:ENST00000480671.5:ENST00000485205.5:ENST00000467955.5:ENST00000466604.5:ENST00000479173.1:ENST00000463504.5:ENST00000452791.1:ENST00000465626.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	128	2	6.14074	6.3274550000000005	6.51417	0.00592387	0.0010006	0.0506158	0.0142243
chr11	10286119	10286219	4996424	0	-	0.43	(0.419,0.45]	chr11	483395	918	INTRON	INTRON	SBF2	ENSG00000133812.18	ENST00000692716.1:ENST00000689940.1:ENST00000256190.13:ENST00000689128.1:ENST00000675281.2:ENST00000676387.2:ENST00000676324.2:ENST00000689258.1:ENST00000533770.6:ENST00000688417.1:ENST00000687210.1:ENST00000526353.2:ENST00000693022.1:ENST00000693201.1:ENST00000686079.1:ENST00000688206.1:ENST00000687256.1:ENST00000685217.1:ENST00000693212.1:ENST00000687300.1:ENST00000688739.1:ENST00000690806.1:ENST00000686677.1:ENST00000692068.1:ENST00000690959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	130	2	6.07595	6.32704	6.57813	0.00629696	0.00132452	0.0523832	0.0173138
chr13	113056002	113056102	5656197	0	+	0.65	(0.58,1]	chr13	555189	12	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	1	304	2	5.28106	6.3269649999999995	7.37287	3.73067e-4	5.25408e-6	0.0110898	3.26574e-4
chr2	201422999	201423099	1357946	0	-	0.46	(0.45,0.485]	chr2	144424	19	INTRON	INTRON	TRAK2	ENSG00000115993.13	ENST00000332624.8:ENST00000430254.1:ENST00000451703.5:ENST00000440597.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	127	2	6.10862	6.326785	6.54495	0.00450754	8.0459e-4	0.0436138	0.012189
chr17	57616266	57616357	6763382	0	+	0.395604	(0.39,0.419]	chr17	682173	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000674898.1:ENST00000577241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	126	2	6.15206	6.326644999999999	6.50123	0.0111378	3.91245e-4	0.0715198	0.00735482
chr12	132952853	132952953	5542060	0	-	0.59	(0.58,1]	chr12	547064	42	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	119	2	6.11865	6.326475	6.5343	0.00429384	8.82891e-5	0.042386	0.00248664
chr13	97338328	97338428	5631967	0	+	0.43	(0.419,0.45]	chr13	553188	35	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	128	2	6.01834	6.326465000000001	6.63459	0.015582500000000001	3.11318e-4	0.0849828	0.00624487
chr14	95319410	95319510	6048843	0	-	0.65	(0.58,1]	chr14	593434	3	SS5_PROX	SS5_PROX:INTRON	CLMN	ENSG00000165959.12	ENST00000298912.9:ENST00000553733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	129	2	5.63118	6.326415	7.02165	0.0109983	1.76307e-5	0.0708586	7.68293e-4
chr17	77486124	77486224	6805243	0	+	0.5	(0.485,0.523]	chr17	686821	21	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	269	2	5.19272	6.326174999999999	7.45963	6.49227e-4	7.55261e-5	0.0149631	0.00222665
chr10	132712552	132712652	4618593	0	+	0.56	(0.523,0.58]	chr10	441181	17	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000487614.1:ENST00000498337.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	124	2	6.235	6.326165	6.41733	0.00490887	4.59688e-4	0.0457614	0.00821903
chr9	109377376	109377475	4366506	0	-	0.50505	(0.485,0.523]	chr9	417018	18	UTR3	UTR3:EXON_MRNA:INTRON	PTPN3	ENSG00000070159.14	ENST00000447271.1:ENST00000262539.7:ENST00000412145.5:ENST00000446349.5:ENST00000374541.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	130	2	5.94031	6.325955	6.7116	0.00281636	0.00107389	0.0336649	0.0148869
chr16	78968115	78968215	6504100	0	+	0.69	(0.58,1]	chr16	645717	1878	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	139	2	5.39546	6.325749999999999	7.25604	0.0168207	7.89156e-6	0.0884836	4.34116e-4
chr6	158573219	158573319	3064027	0	+	0.6	(0.58,1]	chr6	297688	4	SS3_PROX	SS3_PROX:INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	4	584	2	4.49815	6.325614999999999	8.15308	3.51805e-4	3.18833e-7	0.0107244	4.9443e-5
chr11	70685706	70685806	5061136	0	-	0.54	(0.523,0.58]	chr11	492688	157	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	125	2	6.15367	6.325125	6.49658	0.00424382	5.76607e-4	0.0422099	0.00963379
chr9	137569034	137569133	4435754	0	-	0.494949	(0.485,0.523]	chr9	424466	35	INTRON	INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000475100.5:ENST00000472113.5:ENST00000485189.5:ENST00000467768.5:ENST00000477690.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	124	2	6.04835	6.3248750000000005	6.6014	0.00941539	1.68998e-4	0.0653252	0.0040111
chr18	79358753	79358853	7099873	0	+	0.63	(0.58,1]	chr18	722963	102	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000426216.6:ENST00000307671.12:ENST00000490210.6:ENST00000590477.5:ENST00000589951.5:ENST00000588921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	297	2	5.1119	6.3247800000000005	7.53766	5.51806e-4	2.94146e-6	0.0136798	2.17062e-4
chr11	70535130	70535230	5059624	0	-	0.51	(0.485,0.523]	chr11	492663	318	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	274	2	4.99466	6.32419	7.65372	4.37486e-4	1.38525e-4	0.0120003	0.00347765
chr1	43980714	43980812	110963	0	+	0.479592	(0.45,0.485]	chr1	13806	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	B4GALT2	ENSG00000117411.18	ENST00000498543.1:ENST00000434555.7:ENST00000372324.6:ENST00000481924.2:ENST00000497866.6:ENST00000485678.6:ENST00000356836.10:ENST00000309519.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	124	2	6.16551	6.323905	6.4823	0.00879664	2.88849e-4	0.0630845	0.00590733
chr7	26212507	26212607	3331862	0	+	0.39	(0.36,0.39]	chr7	322631	4	UTR3	UTR3:EXON_MRNA	CBX3	ENSG00000122565.19	ENST00000337620.8:ENST00000396386.7:ENST00000409747.5	protein_coding	protein_coding	protein_coding	protein_coding	1	288	2	4.93861	6.32355	7.70849	6.70005e-4	2.41059e-4	0.0152294	0.00518041
chrY	19596172	19596271	8144200	0	+	0.393939	(0.39,0.419]	chrY	848372	32	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TXLNGY	ENSG00000131002.13	ENST00000445715.6:ENST00000253320.8	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	5	579	2	4.14565	6.323275	8.5009	1.64535e-4	1.49773e-4	0.00681825	0.0039392
chr11	129235884	129235984	5144405	0	-	0.41	(0.39,0.419]	chr11	499903	437	INTRON	INTRON	ARHGAP32	ENSG00000134909.19	ENST00000525234.1	protein_coding	protein_coding	protein_coding	protein_coding	1	346	2	4.57749	6.3229299999999995	8.06837	0.00414179	4.148e-6	0.0416505	2.781e-4
chr5	80426195	80426294	2465376	0	+	0.383838	(0.36,0.39]	chr5	246260	141	INTRON	INTRON	ZFYVE16	ENSG00000039319.17	ENST00000338008.9:ENST00000510158.5:ENST00000512558.5:ENST00000505560.5:ENST00000509562.2:ENST00000510995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	138	2	5.76835	6.322875	6.8774	0.00312796	0.00252253	0.0356998	0.0270357
chr10	114434180	114434279	4762105	0	-	0.494949	(0.485,0.523]	chr10	455500	32	UTR3	UTR3:EXON_MRNA	ABLIM1	ENSG00000099204.21	ENST00000533213.7:ENST00000392955.7:ENST00000392952.7	protein_coding	protein_coding	protein_coding	protein_coding	1	268	2	5.3872	6.3227150000000005	7.25823	9.72503e-4	4.11881e-5	0.0187452	0.00142862
chr1	205610710	205610809	647992	0	-	0.373737	(0.36,0.39]	chr1	76806	29	UTR3	UTR3:EXON_MRNA:INTRON	ELK4	ENSG00000158711.14	ENST00000616704.4:ENST00000357992.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	341	2	4.86152	6.3226700000000005	7.78382	0.00241205	9.72476e-6	0.0309229	5.03774e-4
chr1	61177624	61177724	147058	0	+	0.33	(0.29,0.33]	chr1	17147	447	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	360	2	4.94991	6.32238	7.69485	3.37688e-4	4.05115e-5	0.0105112	0.00140748
chr11	70886605	70886705	5063153	0	-	0.37	(0.36,0.39]	chr11	492728	136	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000645599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	341	2	4.74323	6.32236	7.90149	0.00300291	6.80887e-6	0.0348982	3.93504e-4
chr10	34810576	34810676	4671764	0	-	0.39	(0.36,0.39]	chr10	445543	1138	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	133	2	5.73711	6.32231	6.90751	0.0210765	1.26468e-4	0.0996078	0.00325863
chr16	81628089	81628188	6509578	0	+	0.626263	(0.58,1]	chr16	645926	60	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	120	2	6.1825	6.32231	6.46212	0.00211728	2.66047e-4	0.028892	0.00556524
chr19	1288991	1289090	7186894	0	+	0.646465	(0.58,1]	chr19	731132	23	INTRON	INTRON	EFNA2	ENSG00000099617.4	ENST00000215368.4	protein_coding	protein_coding	protein_coding	protein_coding	0	120	2	6.1825	6.32231	6.46212	0.00211728	2.66047e-4	0.028892	0.00556524
chr7	92372007	92372107	3415415	0	+	0.42	(0.419,0.45]	chr7	329883	4	SS5_PROX	SS5_PROX:INTRON	ANKIB1	ENSG00000001629.10	ENST00000265742.8:ENST00000422095.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	130	2	5.88044	6.32209	6.76374	0.0192645	2.19456e-4	0.0954446	0.00483494
chr5	55401018	55401116	2422534	0	+	0.581633	(0.58,1]	chr5	241608	2	INTRON	INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	122	2	6.06394	6.321705	6.57947	0.00165065	3.80904e-4	0.0250898	0.00721291
chr10	72503860	72503960	4710542	0	-	0.43	(0.419,0.45]	chr10	448960	259	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000476605.7:ENST00000642044.1:ENST00000635239.1:ENST00000418483.6:ENST00000398763.8:ENST00000489666.2:ENST00000604238.2:ENST00000603011.5:ENST00000604529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	130	2	6.04724	6.321555	6.59587	0.00611222	0.00142238	0.0517172	0.0181715
chr9	104798998	104799098	4361086	0	-	0.27	[0,0.29]	chr9	416218	4	SS3_PROX	SS3_PROX:INTRON	ABCA1	ENSG00000165029.17	ENST00000374736.8:ENST00000678995.1	protein_coding	protein_coding	protein_coding	protein_coding	0	127	2	5.92742	6.321545	6.71567	0.0013908	8.88991e-4	0.022808	0.0130852
chr4	186638555	186638650	2374327	0	-	0.505263	(0.485,0.523]	chr4	237233	13	INTRON	INTRON	FAT1	ENSG00000083857.15	ENST00000441802.7	protein_coding	protein_coding	protein_coding	protein_coding	0	123	2	6.12521	6.321315	6.51742	0.00823189	2.15808e-4	0.0608959	0.00477041
chr12	23724195	23724295	5386258	0	-	0.42	(0.419,0.45]	chr12	528148	583	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000537393.5:ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000535530.5:ENST00000536629.5:ENST00000536911.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	134	2	5.72794	6.321175	6.91441	0.0242188	1.45031e-4	0.106588	0.00359413
chr12	23831984	23832084	5387341	0	-	0.44	(0.419,0.45]	chr12	528175	690	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000537393.5:ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	134	2	5.72794	6.321175	6.91441	0.0242188	1.45031e-4	0.106588	0.00359413
chr17	14398171	14398271	6683518	0	+	0.46	(0.45,0.485]	chr17	670768	6	INTRON	INTRON	ENSG00000230647	ENSG00000230647.2	ENST00000436469.1:ENST00000655690.1	lncRNA	lncRNA	lncRNA	lncRNA	4	1162	2	5.99623	6.320819999999999	6.64541	5.36814e-5	7.08813e-7	0.00405853	8.36689e-5
chr11	68364243	68364343	4882601	0	+	0.33	(0.29,0.33]	chr11	470559	3	SS5_PROX	SS5_PROX:INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	140	2	5.65065	6.32048	6.99031	0.00240038	0.00143005	0.0261006	0.0231666
chr12	7137772	7137854	5167706	0	+	0.463415	(0.45,0.485]	chr12	502870	3	SS3_PROX	SS3_PROX:INTRON	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000537408.1:ENST00000535668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	125	2	6.1915	6.32033	6.44916	0.00535292	6.44145e-4	0.0480663	0.0104271
chr20	46649510	46649610	7568987	0	-	0.49	(0.485,0.523]	chr20	790913	354	INTRON	INTRON	SLC13A3	ENSG00000158296.14	ENST00000290317.9:ENST00000279027.9:ENST00000472148.5:ENST00000413164.6:ENST00000468915.5:ENST00000372121.5:ENST00000417157.2	protein_coding	protein_coding	protein_coding	protein_coding	0	125	2	5.93906	6.3195049999999995	6.69995	0.0113657	1.26446e-4	0.0723462	0.00325863
chr5	126914741	126914823	2752993	0	-	0.451219	(0.45,0.485]	chr5	269833	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MARCHF3	ENSG00000173926.6	ENST00000308660.6:ENST00000504239.1:ENST00000515241.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	135	2	5.61431	6.319495	7.02468	0.0217589	5.97847e-5	0.100615	0.00186524
chr18	48603537	48603637	7057300	0	+	0.54	(0.523,0.58]	chr18	720287	628	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1	protein_coding	protein_coding	protein_coding	protein_coding	0	124	2	6.18129	6.319395	6.4575	0.0045605	5.34061e-4	0.0438198	0.0091384
chr16	67085133	67085232	6470470	0	+	0.50505	(0.485,0.523]	chr16	642213	24	INTRON	INTRON	CBFB	ENSG00000067955.15	ENST00000651988.1:ENST00000652360.1:ENST00000561924.6:ENST00000290858.11:ENST00000412916.7:ENST00000650873.1:ENST00000563939.3:ENST00000565389.1:ENST00000652116.1:ENST00000566281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	123	2	6.28319	6.319255	6.35532	0.00545609	4.20832e-4	0.0486984	0.00773187
chr19	5817196	5817295	7195558	0	+	0.555556	(0.523,0.58]	chr19	733105	114	INTRON	INTRON	NRTN	ENSG00000171119.3	ENST00000303212.3	protein_coding	protein_coding	protein_coding	protein_coding	0	129	2	5.94389	6.31917	6.69445	0.00293287	0.0010207	0.0343709	0.0143498
chr10	5700736	5700836	4440070	0	+	0.39	(0.36,0.39]	chr10	425055	6	INTRON	INTRON	TASOR2	ENSG00000108021.21	ENST00000695832.1:ENST00000328090.9:ENST00000695737.1:ENST00000695833.1:ENST00000695834.1:ENST00000695835.1:ENST00000695836.1:ENST00000473789.5:ENST00000477043.5:ENST00000496681.5:ENST00000480839.6:ENST00000645567.1:ENST00000482419.1:ENST00000463468.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	130	2	5.83054	6.319115	6.80769	0.0182399	1.67348e-4	0.0921579	0.00399282
chr18	79356761	79356861	7099853	0	+	0.65	(0.58,1]	chr18	722963	82	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000426216.6:ENST00000307671.12:ENST00000490210.6:ENST00000590477.5:ENST00000589951.5:ENST00000588921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	119	2	6.23832	6.318985	6.39965	0.00241374	2.24165e-4	0.0309229	0.00490779
chr3	171732644	171732744	1957774	0	-	0.34	(0.33,0.36]	chr3	199043	62	INTRON	INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9:ENST00000498278.5:ENST00000475273.6:ENST00000440204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	125	2	6.23118	6.318975	6.40677	0.00599713	6.87319e-4	0.0509222	0.0109073
chr7	2378207	2378303	3308505	0	+	0.5625	(0.523,0.58]	chr7	320690	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000475415.5:ENST00000468611.5:ENST00000465670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	271	2	5.58768	6.31893	7.05018	0.00148008	2.08025e-5	0.023604	8.62639e-4
chr20	46724440	46724540	7488450	0	+	0.39	(0.36,0.39]	chr20	780623	95	INTRON	INTRON	SLC2A10	ENSG00000197496.6	ENST00000359271.4:ENST00000611837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	126	2	6.22055	6.318825	6.4171	0.00699528	8.14665e-4	0.0555241	0.0123172
chr21	45508474	45508569	7631396	0	+	0.494737	(0.485,0.523]	chr21	797835	5	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9:ENST00000423214.1:ENST00000473212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	161	2	5.30159	6.318665	7.33574	0.00529578	8.33022e-4	0.044517	0.0171427
chr3	125031587	125031687	1901022	0	-	0.41	(0.39,0.419]	chr3	192925	17	INTRON	INTRON	HEG1	ENSG00000173706.14	ENST00000311127.9	protein_coding	protein_coding	protein_coding	protein_coding	0	126	2	6.05225	6.318125	6.584	0.0130948	3.12789e-4	0.0782739	0.00625974
chr6	42781538	42781638	2915448	0	+	0.51	(0.485,0.523]	chr6	286280	3	SS3_PROX	SS3_PROX:INTRON	BICRAL	ENSG00000112624.13	ENST00000614467.4	protein_coding	protein_coding	protein_coding	protein_coding	0	126	2	6.06388	6.31801	6.57214	0.0036605	7.70737e-4	0.0389784	0.0118331
chr2	61242418	61242518	1155350	0	-	0.41	(0.39,0.419]	chr2	126550	2	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000463046.5:ENST00000472706.5:ENST00000453734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	287	2	5.5561	6.317985	7.07987	0.00223454	4.03513e-5	0.0297409	0.00140598
chr5	1327025	1327124	2609085	0	-	0.59596	(0.58,1]	chr5	259719	7	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	249	2	5.56726	6.317945	7.06863	5.64522e-4	1.08528e-5	0.0138715	5.4604e-4
chr16	85387837	85387936	6516949	0	+	0.494949	(0.485,0.523]	chr16	646391	285	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	146	2	5.53308	6.31765	7.10222	0.00304306	0.00132433	0.0306636	0.0222129
chr13	113058097	113058196	5656218	0	+	0.575758	(0.523,0.58]	chr13	555189	33	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	1	324	2	4.99597	6.316995	7.63802	0.00136807	6.42092e-6	0.0226011	3.76263e-4
chr15	89313909	89314008	6346729	0	-	0.414141	(0.39,0.419]	chr15	625714	83	INTRON	INTRON	POLG	ENSG00000140521.17	ENST00000635831.1	protein_coding	protein_coding	protein_coding	protein_coding	0	125	2	6.28991	6.3169	6.34389	0.00887176	5.94847e-4	0.0634853	0.0098913
chr6	147742254	147742354	3029591	0	+	0.45	(0.419,0.45]	chr6	295875	48	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	0	126	2	6.28712	6.316725	6.34633	0.00923958	7.76382e-4	0.0644666	0.0118807
chrX	1595532	1595632	7830199	0	+	0.66	(0.58,1]	chrX	822078	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	AKAP17A	ENSG00000197976.12	ENST00000313871.9:ENST00000474361.6:ENST00000381261.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	118	2	6.14427	6.31663	6.48899	0.00407804	1.02074e-4	0.0413652	0.00277572
chr10	72060896	72060994	4707387	0	-	0.632653	(0.58,1]	chr10	448659	20	UTR3	UTR3:EXON_MRNA	SPOCK2	ENSG00000107742.14	ENST00000373109.7:ENST00000317376.8	protein_coding	protein_coding	protein_coding	protein_coding	0	132	2	5.51813	6.316095000000001	7.11406	0.013519	1.2868e-5	0.0792526	6.14919e-4
chr16	16018719	16018819	6406694	0	+	0.39	(0.36,0.39]	chr16	633029	17	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	126	2	6.02754	6.31604	6.60454	0.0133452	2.93176e-4	0.0789398	0.00597401
chr17	60388282	60388382	6938530	0	-	0.43	(0.419,0.45]	chr17	707435	423	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7:ENST00000588898.1:ENST00000589761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	284	2	5.17319	6.315945	7.4587	0.0013474	1.37497e-4	0.0224436	0.00346884
chr16	50623992	50624091	6452169	0	+	0.59596	(0.58,1]	chr16	639918	19	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	3	393	2	4.66548	6.315745	7.96601	7.02669e-5	2.15166e-5	0.00470281	8.8591e-4
chr10	131958345	131958444	4616611	0	+	0.59596	(0.58,1]	chr10	441116	25	UTR3	UTR3:EXON_MRNA	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	122	2	6.03271	6.31542	6.59813	0.00158605	4.18183e-4	0.0245893	0.00770005
chr22	38204448	38204548	7724336	0	+	0.54	(0.523,0.58]	chr22	809114	5	INTRON	INTRON	MAFF	ENSG00000185022.12	ENST00000538999.1:ENST00000538320.5:ENST00000338483.7:ENST00000441709.1:ENST00000417948.5:ENST00000426621.6	protein_coding	protein_coding	protein_coding	protein_coding	0	124	2	6.15367	6.31542	6.47717	0.00439843	5.76607e-4	0.0429852	0.00963379
chr5	1328107	1328205	2609096	0	-	0.520408	(0.485,0.523]	chr5	259719	18	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	273	2	5.62006	6.315355	7.01065	0.00158449	1.96821e-5	0.0245893	8.29491e-4
chr12	132953750	132953849	5542069	0	-	0.585859	(0.58,1]	chr12	547064	51	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	118	2	6.31193	6.315065000000001	6.3182	0.00289626	1.74994e-4	0.03418	0.00410754
chr11	12865082	12865173	4803558	0	+	0.494505	(0.485,0.523]	chr11	460584	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6:ENST00000525312.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	133	2	5.80515	6.3143	6.82345	0.00227572	0.00153111	0.0301405	0.0191213
chr12	124876288	124876387	5537482	0	-	0.434343	(0.419,0.45]	chr12	546114	88	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000535005.5:ENST00000541661.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	186	2	5.04004	6.314215000000001	7.58839	0.0137308	0.00106381	0.0814223	0.0196024
chr12	79645008	79645108	5461642	0	-	0.46	(0.45,0.485]	chr12	537126	90	INTRON	INTRON	PAWR	ENSG00000177425.11	ENST00000328827.9:ENST00000551712.1:ENST00000550006.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	139	2	5.68155	6.31417	6.94679	0.00241241	0.00214762	0.0291055	0.0261086
chr13	50747370	50747470	5600110	0	+	0.46	(0.45,0.485]	chr13	551734	210	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000652753.1:ENST00000650996.1	lncRNA	lncRNA	lncRNA	lncRNA	0	129	2	5.95894	6.314065	6.66919	0.0035963	0.00119342	0.0384878	0.016037
chr6	157450930	157451030	3054539	0	+	0.34	(0.33,0.36]	chr6	297167	683	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	0	146	2	5.54909	6.31377	7.07845	0.00379428	0.00175547	0.0355124	0.0260004
chr1	12583850	12583950	402441	0	-	0.49	(0.485,0.523]	chr1	46222	28	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	713	2	6.25404	6.313695	6.37335	9.88735e-5	1.6753e-6	0.00555761	1.47289e-4
chr12	117071173	117071273	5514588	0	-	0.37	(0.36,0.39]	chr12	542882	139	INTRON	INTRON	TESC	ENSG00000088992.18	ENST00000470612.5:ENST00000335209.12:ENST00000541210.5:ENST00000462502.5:ENST00000482176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	125	2	6.10438	6.313665	6.52295	0.0117824	3.65857e-4	0.073726	0.00700609
chr19	11553646	11553745	7332771	0	-	0.646465	(0.58,1]	chr19	758564	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ELOF1	ENSG00000130165.10	ENST00000586683.5:ENST00000252445.7:ENST00000587806.5:ENST00000589171.5:ENST00000591674.5:ENST00000586120.5:ENST00000590700.5:ENST00000591912.1	protein_coding	protein_coding	protein_coding	protein_coding	0	118	2	6.29206	6.313215	6.33437	0.00276493	1.89825e-4	0.0332418	0.0043642
chr3	12966786	12966886	1688797	0	-	0.54	(0.523,0.58]	chr3	176520	58	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	323	2	4.98797	6.312995	7.63802	0.00139021	6.42092e-6	0.022808	3.76263e-4
chr2	239988891	239988984	1393715	0	-	0.494624	(0.485,0.523]	chr2	148853	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	122	2	6.26763	6.31258	6.35753	0.00639185	3.41236e-4	0.0529032	0.00667174
chr3	130711161	130711260	1915263	0	-	0.434343	(0.419,0.45]	chr3	194592	23	INTRON	INTRON	PIK3R4	ENSG00000196455.8	ENST00000356763.8:ENST00000508273.5	protein_coding	protein_coding	protein_coding	protein_coding	0	126	2	6.23716	6.3124	6.38764	0.00863623	8.82327e-4	0.0623824	0.0129974
chr2	3296798	3296898	1081075	0	-	0.57	(0.523,0.58]	chr2	117633	141	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	356	2	5.03259	6.31202	7.59145	5.0213e-4	2.77488e-5	0.0129939	0.00106497
chr13	113059493	113059593	5656232	0	+	0.44	(0.419,0.45]	chr13	555189	47	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	134	2	5.86184	6.312005	6.76217	0.00460997	0.00223565	0.0442426	0.024843
chr18	12597108	12597208	7122263	0	-	0.44	(0.419,0.45]	chr18	724805	83	INTRON	INTRON	SPIRE1	ENSG00000134278.16	ENST00000409402.9:ENST00000410092.7:ENST00000309836.9:ENST00000440472.6:ENST00000453447.6:ENST00000449797.5:ENST00000497844.6:ENST00000462226.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	131	2	5.79088	6.311764999999999	6.83265	0.022052	1.81728e-4	0.101502	0.00422429
chr19	47685644	47685744	7278473	0	+	0.51	(0.485,0.523]	chr19	747629	777	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	0	122	2	6.29006	6.311615	6.33317	0.00613935	3.65589e-4	0.0517628	0.00700609
chr6	129626552	129626652	3259077	0	-	0.34	(0.33,0.36]	chr6	315400	73	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	0	124	2	6.08909	6.311344999999999	6.5336	0.0103694	3.03099e-4	0.0686683	0.00611977
chr6	170398569	170398669	3076565	0	+	0.45	(0.419,0.45]	chr6	299192	26	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	7	2243	2	6.1817	6.311215000000001	6.44073	9.8302e-5	1.6276e-7	0.00554296	3.17478e-5
chr11	70787150	70787250	5062153	0	-	0.54	(0.523,0.58]	chr11	492701	693	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	128	2	5.94389	6.31072	6.67755	0.00302793	0.0010207	0.0350226	0.0143498
chr19	33505865	33505964	7365912	0	-	0.484848	(0.45,0.485]	chr19	763467	45	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000651646.1:ENST00000590408.1:ENST00000593163.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	124	2	6.01306	6.31069	6.60832	0.0113949	2.02062e-4	0.0723462	0.00457229
chr10	131958742	131958841	4616615	0	+	0.676768	(0.58,1]	chr10	441116	29	UTR3	UTR3:EXON_MRNA	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	123	2	5.96814	6.310425	6.65271	0.00141059	5.06433e-4	0.0229261	0.00881473
chr19	33506857	33506956	7365922	0	-	0.515152	(0.485,0.523]	chr19	763467	55	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000651646.1:ENST00000590408.1:ENST00000593163.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	122	2	6.3084	6.31027	6.31214	0.00589975	3.92049e-4	0.0506158	0.00735595
chr10	46803234	46803334	4484715	0	+	0.41	(0.39,0.419]	chr10	428921	9	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000688259.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	280	2	5.11537	6.310125	7.50488	0.00101955	1.46555e-4	0.0191632	0.00362706
chr21	45208735	45208835	7630028	0	+	0.52	(0.485,0.523]	chr21	797621	36	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5:ENST00000629643.2:ENST00000360697.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	128	2	5.75784	6.3099	6.86196	0.0154142	7.79323e-5	0.0849828	0.00227427
chr3	71174743	71174843	1827172	0	-	0.47	(0.45,0.485]	chr3	188150	427	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648426.1:ENST00000498215.7:ENST00000484350.5:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000468577.6:ENST00000649513.1:ENST00000649431.2:ENST00000647614.1:ENST00000649760.1:ENST00000650295.1:ENST00000648895.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	270	2	5.31414	6.3096700000000006	7.3052	0.00108226	6.08132e-5	0.0198031	0.00188821
chr19	18443557	18443656	7347616	0	-	0.626263	(0.58,1]	chr19	761434	10	UTR3	UTR3:EXON_MRNA	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	133	2	5.67642	6.30964	6.94286	0.00117039	7.47593e-4	0.0161372	0.0157899
chr14	68901124	68901202	5999352	0	-	0.538462	(0.523,0.58]	chr14	588710	2	SS3_PROX	SS3_PROX:INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	127	2	5.9758	6.30946	6.64312	0.00323048	9.36996e-4	0.0362983	0.0135546
chr16	29269714	29269814	6433534	0	+	0.52	(0.485,0.523]	chr16	636745	176	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	130	2	5.87431	6.30938	6.74445	0.00264613	0.00127835	0.032596	0.0168904
chr17	82146768	82146868	6987841	0	-	0.45	(0.419,0.45]	chr17	714577	110	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000419322.6:ENST00000392346.6:ENST00000582040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	127	2	5.96475	6.30926	6.65377	0.0169309	2.95666e-4	0.088829	0.00601525
chr21	45452524	45452624	7630788	0	+	0.4	(0.39,0.419]	chr21	797656	467	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	2	769	2	5.68243	6.30916	6.93589	5.17189e-4	5.73321e-7	0.0132148	7.26146e-5
chr17	17736153	17736253	6689397	0	+	0.56	(0.523,0.58]	chr17	671344	116	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	1	264	2	5.30452	6.309055	7.31359	8.79392e-4	5.11392e-5	0.0176886	0.00167326
chr18	48603337	48603437	7057298	0	+	0.49	(0.485,0.523]	chr18	720287	626	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1	protein_coding	protein_coding	protein_coding	protein_coding	0	127	2	5.78967	6.308585	6.8275	0.0146211	8.64447e-5	0.0826064	0.00245611
chr17	77486723	77486823	6805249	0	+	0.64	(0.58,1]	chr17	686821	27	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	245	2	5.38426	6.308575	7.23289	3.89345e-4	2.05205e-5	0.0113333	8.55169e-4
chr17	15467159	15467259	6860106	0	-	0.47	(0.45,0.485]	chr17	695068	3	SS5_PROX	SS5_PROX:INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	123	2	6.0913	6.30842	6.52554	0.00998516	2.5568e-4	0.0673647	0.00541562
chr4	48411134	48411233	2040707	0	+	0.484848	(0.45,0.485]	chr4	208491	161	INTRON	INTRON	SLAIN2	ENSG00000109171.15	ENST00000264313.11:ENST00000512093.5:ENST00000510595.1	protein_coding	protein_coding	protein_coding	protein_coding	0	123	2	6.0913	6.30842	6.52554	0.00998516	2.5568e-4	0.0673647	0.00541562
chr13	113011466	113011566	5655738	0	+	0.63	(0.58,1]	chr13	555138	91	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	297	2	5.19493	6.308415	7.4219	4.55617e-4	4.42444e-6	0.0122859	2.8801e-4
chr7	102047241	102047341	3436287	0	+	0.46	(0.45,0.485]	chr7	332534	187	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	125	2	6.10862	6.308005	6.50739	0.00482293	8.0459e-4	0.0453395	0.012189
chr2	134217221	134217321	896403	0	+	0.4	(0.39,0.419]	chr2	101196	897	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	125	2	6.05225	6.308	6.56375	0.0130948	3.30465e-4	0.0782739	0.00649658
chr20	51597512	51597612	7577649	0	-	0.39	(0.36,0.39]	chr20	791738	11	UTR3	UTR3:EXON_MRNA	ATP9A	ENSG00000054793.14	ENST00000338821.6:ENST00000311637.9	protein_coding	protein_coding	protein_coding	protein_coding	2	559	2	5.26733	6.307395	7.34746	4.71578e-4	3.56522e-5	0.0125606	0.00128023
chr16	78968015	78968115	6504099	0	+	0.57	(0.523,0.58]	chr16	645717	1877	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	136	2	5.51247	6.306605	7.10074	0.0230387	3.53278e-5	0.102982	0.00126913
chr12	11106248	11106348	5371968	0	-	0.34	(0.33,0.36]	chr12	526868	91	INTRON	INTRON	ENSG00000275778:PRH1:TAS2R14	ENSG00000275778.2:ENSG00000231887.8:ENSG00000212127.6	ENST00000536668.2:ENST00000535024.6:ENST00000541977.5:ENST00000381852.4:ENST00000546265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	123	2	6.23387	6.306265	6.37866	0.00810355	4.63001e-4	0.0602166	0.00825119
chr3	13024395	13024495	1689380	0	-	0.53	(0.523,0.58]	chr3	176542	19	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	0	124	2	6.09678	6.30626	6.51574	0.00409625	6.74499e-4	0.0413652	0.0108081
chr10	47532382	47532482	4680506	0	-	0.47	(0.45,0.485]	chr10	446443	85	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	0	123	2	6.06569	6.306185	6.54668	0.0104281	2.40818e-4	0.0687558	0.00517788
chr2	127880725	127880824	1268091	0	-	0.424242	(0.419,0.45]	chr2	136699	61	INTRON	INTRON	AMMECR1L	ENSG00000144233.11	ENST00000679797.1:ENST00000681549.1:ENST00000272647.10:ENST00000393001.1:ENST00000681313.1:ENST00000679574.1:ENST00000680246.1:ENST00000680886.1:ENST00000680045.1:ENST00000680145.1:ENST00000681844.1:ENST00000680603.1:ENST00000680431.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	125	2	6.28712	6.30617	6.32522	0.00956261	7.76382e-4	0.0658012	0.0118807
chr11	69083658	69083758	4885498	0	+	0.63	(0.58,1]	chr11	471022	5	PRIMIRNA	PRIMIRNA	MIR3164	ENSG00000265539.1	ENST00000581178.1	miRNA	primary_miRNA	miRNA	primary_miRNA	0	121	2	6.03271	6.306089999999999	6.57947	0.00165065	4.18183e-4	0.0250898	0.00770005
chr10	100229027	100229127	4747972	0	-	0.55	(0.523,0.58]	chr10	453688	2	SS5_PROX	SS5_PROX:INTRON	CHUK	ENSG00000213341.11	ENST00000370397.8	protein_coding	protein_coding	protein_coding	protein_coding	0	125	2	5.85087	6.3052399999999995	6.75961	0.0132767	1.00121e-4	0.0787251	0.00274217
chr16	51147789	51147889	6588394	0	-	0.39	(0.36,0.39]	chr16	658639	40	INTRON	INTRON	SALL1	ENSG00000103449.13	ENST00000251020.9:ENST00000685868.1:ENST00000440970.6:ENST00000566102.1:ENST00000570206.2:ENST00000690502.1:ENST00000562674.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	126	2	5.9463800000000004	6.30461	6.66284	0.0151971	2.49931e-4	0.084474	0.00531531
chr15	82383849	82383949	6165749	0	+	0.43	(0.419,0.45]	chr15	606819	281	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	132	2	5.89444	6.30435	6.71426	0.0050028	0.00206691	0.0463896	0.0235758
chr7	47363483	47363582	3587426	0	-	0.434343	(0.419,0.45]	chr7	346030	168	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	125	2	6.26235	6.30434	6.34633	0.00923958	8.27298e-4	0.0644666	0.0124589
chr1	43593397	43593495	107384	0	+	0.602041	(0.58,1]	chr1	13240	4	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	2	605	2	6.02469	6.304275	6.58386	6.36525e-5	2.73081e-7	0.00444014	4.43081e-5
chr22	50679528	50679628	7754964	0	+	0.52	(0.485,0.523]	chr22	812715	1	SS5_PROX	SS5_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	123	2	6.15007	6.304	6.45793	0.00452302	6.0909e-4	0.0436138	0.0100377
chr1	855449	855549	662	0	+	0.42	(0.419,0.45]	chr1	92	28	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	LINC01128	ENSG00000228794.11	ENST00000445118.7:ENST00000670780.1:ENST00000659124.2:ENST00000688309.1:ENST00000666741.1:ENST00000685764.1:ENST00000657837.1:ENST00000691316.1	lncRNA	lncRNA	lncRNA	lncRNA	0	131	2	5.92632	6.30387	6.68142	0.00529005	0.00191339	0.047841	0.0223437
chr12	132537347	132537447	5352989	0	+	0.65	(0.58,1]	chr12	523670	90	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	6.11865	6.30382	6.48899	0.00429384	1.02074e-4	0.042386	0.00277572
chr16	84735183	84735282	6514181	0	+	0.474747	(0.45,0.485]	chr16	646283	13	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	330	2	5.03723	6.303745	7.57026	0.00143262	1.12733e-5	0.0232041	5.59324e-4
chr3	60526109	60526209	1798868	0	-	0.44	(0.419,0.45]	chr3	186807	4454	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	128	2	6.04724	6.303710000000001	6.56018	0.00648928	0.00142238	0.0532359	0.0181715
chr8	108457320	108457419	3902460	0	+	0.424242	(0.419,0.45]	chr8	372963	10	INTRON	INTRON	EMC2	ENSG00000104412.8	ENST00000220853.8:ENST00000517784.5:ENST00000519642.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	128	2	6.04724	6.303710000000001	6.56018	0.00648928	0.00142238	0.0532359	0.0181715
chr15	76338614	76338714	6156241	0	+	0.53	(0.523,0.58]	chr15	605683	1	SS5_PROX	SS5_PROX:INTRON	ISL2	ENSG00000159556.10	ENST00000290759.9:ENST00000558656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	129	2	5.69157	6.303675	6.91578	0.0172851	6.24234e-5	0.0897247	0.00192539
chr16	89913721	89913816	6526313	0	+	0.663158	(0.58,1]	chr16	647716	2	UTR5	UTR5:EXON_MRNA:INTRON	ENSG00000267048:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000539976.1:ENST00000555427.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	1	258	2	5.83417	6.303375	6.77258	0.00108768	4.21721e-6	0.0198535	2.80611e-4
chr9	94184244	94184344	4185698	0	+	0.41	(0.39,0.419]	chr9	397907	4	INTRON	INTRON	MIRLET7A1HG	ENSG00000269929.4	ENST00000652620.1:ENST00000602703.1:ENST00000660581.1	lncRNA	lncRNA	lncRNA	lncRNA	0	126	2	6.11256	6.30323	6.4939	0.00628691	0.00108325	0.0523832	0.0149525
chr16	89430155	89430255	6661135	0	-	0.51	(0.485,0.523]	chr16	666747	114	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	980	2	5.8653	6.30322	6.74114	2.25884e-4	9.68393e-8	0.00850386	2.27769e-5
chr1	5879825	5879919	386624	0	-	0.56383	(0.523,0.58]	chr1	44406	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NPHP4	ENSG00000131697.18	ENST00000378156.9:ENST00000478423.6:ENST00000489180.6:ENST00000378169.7:ENST00000470763.1:ENST00000622020.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	121	2	6.17383	6.302835	6.43184	0.00760615	2.62665e-4	0.0579698	0.00552802
chr7	2278605	2278705	3532962	0	-	0.63	(0.58,1]	chr7	341202	3	SS3_PROX	SS3_PROX:INTRON	SNX8	ENSG00000106266.11	ENST00000222990.8:ENST00000435060.5:ENST00000457286.5:ENST00000435336.5:ENST00000494722.1:ENST00000447136.1:ENST00000419693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	117	2	6.09256	6.3021899999999995	6.51182	0.00452436	9.48877e-5	0.0436138	0.00262417
chr2	32594653	32594746	750229	0	+	0.473118	(0.45,0.485]	chr2	87548	2	SS3_PROX	SS3_PROX:INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000471232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	122	2	6.23609	6.30213	6.36817	0.00778782	3.97249e-4	0.0590114	0.00741985
chr17	15456479	15456579	6859999	0	-	0.43	(0.419,0.45]	chr17	695067	30	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	281	2	5.24521	6.3017900000000004	7.35837	0.00161543	1.11971e-4	0.0248769	0.00298349
chr1	808329	808428	379593	0	-	0.464646	(0.45,0.485]	chr1	42663	298	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000634337.2:ENST00000635509.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	122	2	6.25887	6.301545	6.34422	0.00748565	4.24458e-4	0.0576451	0.00777807
chr2	159324610	159324710	1287960	0	-	0.5	(0.485,0.523]	chr2	138444	4	SS5_PROX	SS5_PROX:INTRON	BAZ2B	ENSG00000123636.19	ENST00000392782.5:ENST00000392783.7:ENST00000548440.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	435	2	4.30171	6.30134	8.30097	0.00223964	7.8799e-7	0.0298	8.9904700000000007e-05
chr4	5783051	5783151	2009956	0	+	0.49	(0.485,0.523]	chr4	205033	1	SS3_PROX	SS3_PROX:INTRON	EVC	ENSG00000072840.13	ENST00000264956.11	protein_coding	protein_coding	protein_coding	protein_coding	0	127	2	5.75784	6.301335	6.84483	0.0154142	8.20567e-5	0.0849828	0.00236018
chr18	24104660	24104760	7035970	0	+	0.5	(0.485,0.523]	chr18	718596	212	INTRON	INTRON	TTC39C	ENSG00000168234.13	ENST00000304621.10:ENST00000317571.8	protein_coding	protein_coding	protein_coding	protein_coding	0	130	2	5.65791	6.301295	6.94468	0.0181582	6.06735e-5	0.0921579	0.00188492
chr11	86268561	86268661	4909814	0	+	0.49	(0.485,0.523]	chr11	474044	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	EED	ENSG00000074266.22	ENST00000263360.11:ENST00000528180.5:ENST00000672825.1:ENST00000673233.2:ENST00000327320.8:ENST00000351625.10:ENST00000534595.1:ENST00000525244.5:ENST00000534564.5:ENST00000524673.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	121	2	6.17426	6.301245	6.42823	0.00754939	2.78987e-4	0.0578091	0.00577243
chr10	75469712	75469812	4520855	0	+	0.54	(0.523,0.58]	chr10	432249	181	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	1	268	2	5.57879	6.301225	7.02366	0.00155872	2.14048e-5	0.0243306	8.81955e-4
chr6	44260839	44260939	3137774	0	-	0.5	(0.485,0.523]	chr6	306523	3	SS3_PROX	SS3_PROX:INTRON	NFKBIE	ENSG00000146232.17	ENST00000275015.9:ENST00000619360.6:ENST00000477930.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	129	2	5.87431	6.301215	6.72812	0.00272951	0.00127835	0.0331786	0.0168904
chr9	135836764	135836864	4431114	0	-	0.46	(0.45,0.485]	chr9	423507	88	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	1	275	2	5.5862	6.300745	7.01529	0.00188703	2.62616e-5	0.0271069	0.00102025
chr1	95060074	95060173	539971	0	-	0.474747	(0.45,0.485]	chr1	62878	181	INTRON	INTRON	ALG14	ENSG00000172339.10	ENST00000370205.6:ENST00000495856.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	122	2	6.14119	6.3006899999999995	6.46019	0.00917101	3.07362e-4	0.064285	0.00618726
chr17	81137599	81137699	6982878	0	-	0.48	(0.45,0.485]	chr17	713268	27	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	122	2	6.14119	6.3006899999999995	6.46019	0.00917101	3.07362e-4	0.064285	0.00618726
chr15	25016398	25016496	6064017	0	+	0.336735	(0.33,0.36]	chr15	595414	13	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	5	1339	2	5.85072	6.300135	6.74955	4.58262e-5	9.25111e-7	0.00373545	9.92137e-5
chr9	35832110	35832207	4145603	0	+	0.494845	(0.485,0.523]	chr9	394383	18	INTRON	INTRON	TMEM8B	ENSG00000137103.20	ENST00000377996.5:ENST00000643932.2:ENST00000439587.6:ENST00000377991.9:ENST00000650015.1:ENST00000464519.6:ENST00000377988.6:ENST00000473947.1:ENST00000490199.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	139	2	5.61619	6.29979	6.98339	0.00247695	0.00167095	0.0266492	0.0252949
chr11	12783029	12783129	4802732	0	+	0.43	(0.419,0.45]	chr11	460563	182	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	0	127	2	6.07595	6.299765	6.52358	0.00689831	0.00132452	0.0553728	0.0173138
chr2	55023090	55023189	1148258	0	-	0.454545	(0.45,0.485]	chr2	125466	87	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	0	122	2	6.11646	6.29938	6.4823	0.00956667	2.88849e-4	0.0658012	0.00590733
chr1	246739086	246739184	374095	0	+	0.469388	(0.45,0.485]	chr1	42112	27	INTRON	INTRON	SCCPDH	ENSG00000143653.10	ENST00000366510.4	protein_coding	protein_coding	protein_coding	protein_coding	1	326	2	4.92791	6.298945	7.66998	0.00177375	8.24934e-6	0.0262073	4.47929e-4
chr14	104892089	104892185	5926147	0	+	0.666667	(0.58,1]	chr14	579999	20	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	119	2	6.0945	6.2984	6.5023	0.00194503	3.47472e-4	0.0275844	0.00673552
chr7	47376715	47376815	3587559	0	-	0.43	(0.419,0.45]	chr7	346036	67	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	347	2	4.52253	6.298325	8.07412	0.0050681500000000004	5.00803e-6	0.0465789	3.15957e-4
chr7	78328484	78328584	3615248	0	-	0.42	(0.419,0.45]	chr7	349097	428	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000628980.2:ENST00000419488.5:ENST00000629359.2:ENST00000535697.5:ENST00000637441.1:ENST00000626691.2:ENST00000522391.3:ENST00000637282.1:ENST00000637486.1:ENST00000519748.5:ENST00000636178.1:ENST00000520379.2:ENST00000636039.1:ENST00000630991.2:ENST00000628781.1:ENST00000636717.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	124	2	6.19164	6.2982949999999995	6.40495	0.0118587	5.72149e-4	0.0740271	0.00960229
chr8	630437	630537	3932024	0	-	0.61	(0.58,1]	chr8	376005	28	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	117	2	6.23832	6.29739	6.35646	0.00264106	2.24165e-4	0.0325876	0.00490779
chr7	44522742	44522840	3585221	0	-	0.479592	(0.45,0.485]	chr7	345623	1	INTRON	INTRON	NPC1L1	ENSG00000015520.15	ENST00000381160.8:ENST00000289547.8:ENST00000546276.5	protein_coding	protein_coding	protein_coding	protein_coding	0	131	2	5.8269	6.29734	6.76778	0.0029996	0.00167585	0.0348875	0.0203806
chr14	103106017	103106106	5921879	0	+	0.561798	(0.523,0.58]	chr14	579221	6	INTRON	INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	121	2	6.26113	6.297295	6.33346	0.00571732	4.27166e-4	0.0498083	0.00779962
chr14	104777338	104777433	6057662	0	-	0.631579	(0.58,1]	chr14	594698	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000557552.1:ENST00000683722.1:ENST00000555528.5:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000544168.5:ENST00000554848.5:ENST00000682269.1:ENST00000555380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	244	2	5.2139	6.29712	7.38034	2.77767e-4	3.67936e-5	0.00947659	0.00131168
chr13	113055703	113055802	5656194	0	+	0.545455	(0.523,0.58]	chr13	555189	9	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	123	2	6.09678	6.29668	6.49658	0.00424382	6.74499e-4	0.0422099	0.0108081
chr18	80033251	80033350	7182842	0	-	0.565657	(0.523,0.58]	chr18	730350	23	INTRON	INTRON	TXNL4A	ENSG00000141759.15	ENST00000585474.5:ENST00000592957.1:ENST00000589926.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	123	2	6.09678	6.29668	6.49658	0.00424382	6.74499e-4	0.0422099	0.0108081
chr5	134407310	134407410	2764853	0	-	0.45	(0.419,0.45]	chr5	271088	40	INTRON	INTRON	CDKN2AIPNL	ENSG00000237190.4	ENST00000458198.3	protein_coding	protein_coding	protein_coding	protein_coding	0	125	2	6.1854	6.296635	6.40787	0.00835435	0.00100635	0.0613588	0.0142602
chr10	124757143	124757242	4779804	0	-	0.494949	(0.485,0.523]	chr10	456999	10	UTR3	UTR3:EXON_MRNA:INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000495711.2:ENST00000652548.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	328	2	5.18502	6.29662	7.40822	9.27103e-4	1.43934e-5	0.0181967	6.61734e-4
chr19	33505766	33505865	7365911	0	-	0.494949	(0.485,0.523]	chr19	763467	44	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000651646.1:ENST00000590408.1:ENST00000593163.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	121	2	6.07443	6.295925	6.51742	0.00899749	2.15808e-4	0.0637469	0.00477041
chrX	97273932	97274032	7920657	0	+	0.37	(0.36,0.39]	chrX	829190	257	INTRON	INTRON	DIAPH2	ENSG00000147202.19	ENST00000373049.8:ENST00000324765.13	protein_coding	protein_coding	protein_coding	protein_coding	0	123	2	6.24677	6.2956199999999995	6.34447	0.00931845	5.89187e-4	0.0649153	0.00981079
chr21	34116205	34116305	7615146	0	+	0.51	(0.485,0.523]	chr21	795335	101	INTRON	INTRON	MRPS6	ENSG00000243927.6	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	123	2	5.9104	6.295585	6.68077	0.0119344	1.33825e-4	0.0741726	0.00338739
chrX	133655535	133655635	8112711	0	-	0.39	(0.36,0.39]	chrX	845480	586	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000692074.1:ENST00000667662.1:ENST00000666017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	760	2	6.20675	6.295305000000001	6.38386	1.78892e-4	3.20541e-6	0.00752612	2.30452e-4
chr7	140453823	140453922	3726450	0	-	0.343434	(0.33,0.36]	chr7	357847	9	UTR3	UTR3:EXON_MRNA	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	124	2	6.12375	6.29518	6.46661	0.00539516	9.1162e-4	0.0483725	0.0133249
chr2	85024602	85024701	843068	0	+	0.292929	(0.29,0.33]	chr2	94837	102	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	0	124	2	5.85815	6.29514	6.73213	0.011855	1.25004e-4	0.0740271	0.00324079
chr3	188664600	188664700	1656917	0	+	0.4	(0.39,0.419]	chr3	173813	544	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000471917.1:ENST00000415906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	123	2	6.19949	6.295059999999999	6.39063	0.0103045	5.25726e-4	0.0684871	0.00903907
chr7	155725038	155725138	3519337	0	+	0.36	(0.33,0.36]	chr7	339832	62	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	122	2	6.21073	6.294695	6.37866	0.00843224	4.63001e-4	0.0617623	0.00825119
chr1	178438821	178438921	290004	0	+	0.43	(0.419,0.45]	chr1	32982	179	INTRON	INTRON	RASAL2	ENSG00000075391.18	ENST00000367649.8:ENST00000696605.1:ENST00000462775.5:ENST00000696606.1:ENST00000696607.1	protein_coding	protein_coding	protein_coding	protein_coding	0	127	2	6.04724	6.294615	6.54199	0.00668959	0.00142238	0.0541558	0.0181715
chr10	133349687	133349786	4783431	0	-	0.626263	(0.58,1]	chr10	457516	35	INTRON	INTRON	ENSG00000226699	ENSG00000226699.1	ENST00000452591.1	lncRNA	lncRNA	lncRNA	lncRNA	2	399	2	4.74225	6.29455	7.84685	4.54245e-4	9.72929e-7	0.0122651	1.03091e-4
chr4	914352	914444	2178765	0	-	0.717391	(0.58,1]	chr4	220690	3	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000512325.3:ENST00000510022.5:ENST00000511229.5:ENST00000511983.5:ENST00000628912.1:ENST00000513935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	116	2	6.1942	6.2940450000000006	6.39389	0.00368616	1.38027e-4	0.0389784	0.00347229
chr10	43143446	43143546	4482088	0	+	0.42	(0.419,0.45]	chr10	428499	45	INTRON	INTRON	CSGALNACT2	ENSG00000169826.8	ENST00000374466.4	protein_coding	protein_coding	protein_coding	protein_coding	0	124	2	6.09518	6.293965	6.49275	0.0138177	4.54324e-4	0.0803169	0.00818426
chr12	132538144	132538243	5352997	0	+	0.585859	(0.58,1]	chr12	523670	98	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	116	2	6.16945	6.293855000000001	6.41826	0.00387582	1.27804e-4	0.0401256	0.00328053
chr22	42888242	42888342	7823006	0	-	0.61	(0.58,1]	chr22	820584	2	SS5_PROX	SS5_PROX:INTRON	PACSIN2	ENSG00000100266.19	ENST00000337959.8:ENST00000263246.8:ENST00000407585.5:ENST00000403744.7:ENST00000402229.5:ENST00000634914.1	protein_coding	protein_coding	protein_coding	protein_coding	0	116	2	6.16945	6.293855000000001	6.41826	0.00387582	1.27804e-4	0.0401256	0.00328053
chr5	307353	307447	2377998	0	+	0.62766	(0.58,1]	chr5	237477	2	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1:ENST00000511482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	116	2	6.16945	6.293855000000001	6.41826	0.00387582	1.27804e-4	0.0401256	0.00328053
chr5	104274877	104274977	2497538	0	+	0.38	(0.36,0.39]	chr5	248658	1696	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	1	334	2	4.79512	6.293835	7.79255	0.00272842	9.47171e-6	0.0331786	4.9494e-4
chr21	45452124	45452224	7630784	0	+	0.65	(0.58,1]	chr21	797656	463	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	116	2	6.21852	6.293810000000001	6.3691	0.00350812	1.49225e-4	0.0379357	0.00367368
chr6	138465052	138465152	3273791	0	-	0.34	(0.33,0.36]	chr6	316903	175	INTRON	INTRON	NHSL1	ENSG00000135540.12	ENST00000427025.6:ENST00000343505.10:ENST00000342260.9:ENST00000426841.6:ENST00000491526.6:ENST00000533765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	324	2	6.12054	6.293575000000001	6.46661	0.00539516	6.02388e-6	0.0483725	3.58754e-4
chr15	61961388	61961488	6292989	0	-	0.4	(0.39,0.419]	chr15	619864	4	SS5_PROX	SS5_PROX:INTRON	VPS13C	ENSG00000129003.19	ENST00000249837.7:ENST00000644861.2:ENST00000645819.1:ENST00000395898.3:ENST00000558088.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	126	2	6.05569	6.293570000000001	6.53145	0.00589503	0.0012512	0.0506158	0.0166412
chr16	1459840	1459917	6532771	0	-	0.675325	(0.58,1]	chr16	648974	3	INTRON	INTRON	CLCN7	ENSG00000103249.18	ENST00000382745.9:ENST00000448525.5:ENST00000262318.12:ENST00000569851.6	protein_coding	protein_coding	protein_coding	protein_coding	0	119	2	5.86491	6.293555	6.7222	0.00707578	4.79419e-5	0.0558168	0.00159846
chr7	893239	893339	3307717	0	+	0.71	(0.58,1]	chr7	320475	1	SS3_PROX	SS3_PROX:INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000407192.5:ENST00000464468.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	116	2	6.14427	6.293245	6.44222	0.00407804	1.18459e-4	0.0413652	0.00311099
chr2	121655405	121655505	888190	0	+	0.49	(0.485,0.523]	chr2	100466	25	INTRON	INTRON	NIFK-AS1	ENSG00000236859.8	ENST00000667483.1:ENST00000662168.1:ENST00000654001.1:ENST00000659307.1:ENST00000419902.3:ENST00000690074.1:ENST00000666647.1	lncRNA	lncRNA	lncRNA	lncRNA	0	133	2	5.73251	6.293195000000001	6.85388	0.00214661	0.00184599	0.0291055	0.0217471
chr18	48929435	48929534	7157797	0	-	0.515152	(0.485,0.523]	chr18	727796	72	INTRON	INTRON	SMAD7	ENSG00000101665.10	ENST00000262158.8:ENST00000545051.2:ENST00000591805.5:ENST00000589634.1:ENST00000587336.1:ENST00000585986.1:ENST00000586093.1:ENST00000588190.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	127	2	5.90769	6.292835	6.67798	0.00300122	0.0011708	0.0348875	0.0157899
chr11	70686305	70686405	5061142	0	-	0.49	(0.485,0.523]	chr11	492688	163	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	129	2	5.84014	6.292294999999999	6.74445	0.00264613	0.00139792	0.032596	0.0179863
chr11	64306128	64306226	4868814	0	+	0.612245	(0.58,1]	chr11	467347	4	SS5_PROX	SS5_PROX:INTRON	ESRRA	ENSG00000173153.17	ENST00000406310.6:ENST00000000442.11:ENST00000677967.1:ENST00000539594.5	protein_coding	protein_coding	protein_coding	protein_coding	0	116	2	6.26598	6.29209	6.3182	0.00318361	1.74994e-4	0.0360488	0.00410754
chr2	65391180	65391279	1171767	0	-	0.454545	(0.45,0.485]	chr2	127582	106	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	1	271	2	4.99153	6.291790000000001	7.59205	6.16892e-4	1.6063e-4	0.0145945	0.00387435
chr2	190194473	190194573	1344276	0	-	0.47	(0.45,0.485]	chr2	142651	41	INTRON	INTRON	HIBCH	ENSG00000198130.16	ENST00000399855.2	protein_coding	protein_coding	protein_coding	protein_coding	1	280	2	4.79839	6.291635	7.78488	4.20312e-4	2.83156e-4	0.011772	0.00581439
chr11	70584429	70584529	5060117	0	-	0.57	(0.523,0.58]	chr11	492663	811	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	123	2	6.06747	6.291605000000001	6.51574	0.00409625	7.30845e-4	0.0413652	0.0113963
chr19	33506956	33507055	7365923	0	-	0.555556	(0.523,0.58]	chr19	763467	56	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000651646.1:ENST00000590408.1:ENST00000593163.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	120	2	6.17383	6.29124	6.40865	0.00760615	2.80789e-4	0.0579698	0.00578259
chr11	70657929	70658029	5060854	0	-	0.56	(0.523,0.58]	chr11	492672	31	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	120	2	6.22127	6.291205	6.36114	0.00699217	3.21725e-4	0.0555241	0.0063695
chr20	36855884	36855983	7557060	0	-	0.666667	(0.58,1]	chr20	789155	161	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	6.1825	6.291075	6.39965	0.00241374	2.66047e-4	0.0309229	0.00556524
chrX	1396932	1397024	7830130	0	+	0.48913	(0.485,0.523]	chrX	822051	3	SS5_PROX	SS5_PROX:INTRON	LINC00106	ENSG00000236871.7	ENST00000434938.7	lncRNA	lncRNA	lncRNA	lncRNA	1	277	2	4.78049	6.291015	7.80154	3.22875e-4	2.63267e-4	0.0102338	0.00553857
chr5	172947827	172947926	2591585	0	+	0.363636	(0.36,0.39]	chr5	257156	100	INTRON	INTRON	ERGIC1	ENSG00000113719.17	ENST00000393784.8:ENST00000690799.1:ENST00000686615.1:ENST00000684928.1:ENST00000691612.1:ENST00000687901.1:ENST00000689975.1:ENST00000693299.1:ENST00000687702.1:ENST00000685391.1:ENST00000686955.1:ENST00000692557.1:ENST00000686449.1:ENST00000693572.1:ENST00000688069.1:ENST00000523215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	140	2	5.61929	6.2908550000000005	6.96242	0.00359045	0.00268438	0.0342681	0.0328854
chr21	38808463	38808563	7620627	0	+	0.49	(0.485,0.523]	chr21	796141	2	SS5_PROX	SS5_PROX:INTRON	ETS2	ENSG00000157557.13	ENST00000360214.8:ENST00000665212.1:ENST00000667466.1:ENST00000360938.8:ENST00000432278.5:ENST00000666778.1:ENST00000653642.1	protein_coding	protein_coding	protein_coding	protein_coding	1	395	2	5.80728	6.290745	6.77421	2.55257e-4	1.01398e-4	0.00904796	0.00276585
chr19	41326236	41326336	7381061	0	-	0.58	(0.523,0.58]	chr19	765964	232	INTRON	INTRON	TGFB1	ENSG00000105329.11	ENST00000598758.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	120	2	6.14951	6.290675	6.43184	0.00793972	2.62665e-4	0.0596361	0.00552802
chr4	10102604	10102703	2195676	0	-	0.50505	(0.485,0.523]	chr4	222412	31	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	121	2	6.2048	6.290615	6.37643	0.0052506	5.23665e-4	0.0476984	0.0090184
chr3	98745978	98746078	1516346	0	+	0.4	(0.39,0.419]	chr3	161540	120	INTRON	INTRON	ST3GAL6	ENSG00000064225.13	ENST00000489112.5:ENST00000265261.11:ENST00000460774.5:ENST00000469105.5:ENST00000466482.5:ENST00000462152.5:ENST00000486249.5:ENST00000497008.5:ENST00000486334.6:ENST00000394162.5:ENST00000613264.5:ENST00000480133.1:ENST00000465004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	292	2	5.71982	6.29059	6.86136	0.0033099	2.47278e-5	0.0368376	9.80853e-4
chr1	15052111	15052211	44933	0	+	0.46	(0.45,0.485]	chr1	4408	76	INTRON	INTRON	KAZN	ENSG00000189337.17	ENST00000636203.1:ENST00000376030.7:ENST00000491547.1:ENST00000503743.5:ENST00000361144.9:ENST00000400798.6:ENST00000376028.8:ENST00000400797.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	128	2	5.89443	6.290265	6.6861	0.00348661	0.00141013	0.0379065	0.0180659
chr18	74915920	74916020	7092441	0	+	0.52	(0.485,0.523]	chr18	722466	101	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	123	2	6.06388	6.290025	6.51617	0.00406194	7.70737e-4	0.0413652	0.0118331
chr10	132754772	132754872	4619020	0	+	0.57	(0.523,0.58]	chr10	441201	9	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	0	124	2	5.82039	6.29	6.75961	0.0139724	1.00121e-4	0.0805959	0.00274217
chr19	55270736	55270835	7407625	0	-	0.515152	(0.485,0.523]	chr19	771326	41	INTRON	INTRON	HSPBP1	ENSG00000133265.11	ENST00000433386.7:ENST00000255631.9:ENST00000587922.5:ENST00000585927.1:ENST00000587959.1	protein_coding	protein_coding	protein_coding	protein_coding	0	120	2	6.19817	6.28983	6.38149	0.00723584	3.18797e-4	0.0565323	0.00634142
chr12	113878586	113878686	5509657	0	-	0.52	(0.485,0.523]	chr12	542470	193	INTRON	INTRON	RBM19	ENSG00000122965.11	ENST00000545145.6:ENST00000392561.7:ENST00000261741.10	protein_coding	protein_coding	protein_coding	protein_coding	0	120	2	6.17426	6.289655	6.40505	0.00754939	2.98099e-4	0.0578091	0.00604717
chr3	31885114	31885214	1729442	0	-	0.36	(0.33,0.36]	chr3	179047	49	INTRON	INTRON	OSBPL10	ENSG00000144645.15	ENST00000396556.7:ENST00000438237.6:ENST00000480671.5:ENST00000485205.5:ENST00000467955.5:ENST00000466604.5:ENST00000479173.1:ENST00000463504.5:ENST00000452791.1:ENST00000465626.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	123	2	6.15136	6.289175	6.42699	0.00578704	8.48155e-4	0.0501412	0.0126615
chr19	2335718	2335818	7189478	0	+	0.71	(0.58,1]	chr19	731782	6	INTRON	INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	116	2	6.06599	6.288905	6.51182	0.00477081	9.48877e-5	0.0450109	0.00262417
chr1	206053465	206053565	323556	0	+	0.46	(0.45,0.485]	chr1	36509	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000285417	ENSG00000285417.1	ENST00000647316.1:ENST00000582596.5	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	0	123	2	6.10862	6.2887249999999995	6.46883	0.00516809	8.0459e-4	0.0472296	0.012189
chr14	23517709	23517809	5757131	0	+	0.61	(0.58,1]	chr14	564963	29	INTRON	INTRON	ZFHX2-AS1	ENSG00000157306.14	ENST00000556354.5:ENST00000553985.1:ENST00000554403.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	116	2	6.26544	6.288685	6.31193	0.00289626	2.06156e-4	0.03418	0.00461335
chr6	47269078	47269177	3144097	0	-	0.494949	(0.485,0.523]	chr6	306750	152	INTRON	INTRON	TNFRSF21	ENSG00000146072.6	ENST00000296861.2	protein_coding	protein_coding	protein_coding	protein_coding	2	389	2	5.52604	6.288325	7.05061	0.00146547	5.84627e-6	0.023492	3.52257e-4
chr5	66065487	66065586	2438772	0	+	0.30303	(0.29,0.33]	chr5	242864	100	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1:ENST00000511671.5:ENST00000503913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	121	2	6.1723	6.28822	6.40414	0.00444127	6.13404e-4	0.0433231	0.0100959
chr2	233176272	233176370	1058396	0	+	0.520408	(0.485,0.523]	chr2	115144	48	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493632.5:ENST00000465281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	124	2	6.00341	6.287775	6.57214	0.0036605	9.07333e-4	0.0389784	0.0132726
chr19	36850968	36851068	7249341	0	+	0.63	(0.58,1]	chr19	743112	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF345	ENSG00000251247.12	ENST00000589046.1:ENST00000586933.5:ENST00000420450.6:ENST00000614069.4:ENST00000532141.5:ENST00000526123.5:ENST00000432005.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	117	2	5.95454	6.28769	6.62084	0.0059453	6.67603e-5	0.0506158	0.00202861
chr11	134240753	134240851	4967119	0	+	0.489796	(0.485,0.523]	chr11	480169	2	INTRON	INTRON	VPS26B	ENSG00000151502.11	ENST00000281187.10:ENST00000525095.2:ENST00000527586.1:ENST00000530402.1:ENST00000525918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	121	2	6.1777	6.28747	6.39724	0.00505512	5.64449e-4	0.0465263	0.00950156
chr16	1606919	1607019	6533946	0	-	0.47	(0.45,0.485]	chr16	649182	4	SS5_PROX	SS5_PROX:INTRON	IFT140	ENSG00000187535.14	ENST00000426508.7:ENST00000397417.6:ENST00000439987.6:ENST00000566052.1:ENST00000569646.5:ENST00000569812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	122	2	5.98601	6.2870349999999995	6.58806	0.0119228	2.14087e-4	0.0741726	0.00475596
chr7	560964	561064	3523694	0	-	0.47	(0.45,0.485]	chr7	340370	91	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000400758.6	protein_coding	protein_coding	protein_coding	protein_coding	0	122	2	5.98601	6.2870349999999995	6.58806	0.0119228	2.14087e-4	0.0741726	0.00475596
chr2	239159052	239159150	1390287	0	-	0.520408	(0.485,0.523]	chr2	148698	19	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	120	2	6.28319	6.286625000000001	6.29006	0.00613935	4.20832e-4	0.0517628	0.00773187
chr11	46459697	46459797	5031482	0	-	0.42	(0.419,0.45]	chr11	486648	157	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1:ENST00000529553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	124	2	6.1854	6.286519999999999	6.38764	0.00863623	0.00100635	0.0623824	0.0142602
chr14	105215088	105215186	6058148	0	-	0.530612	(0.523,0.58]	chr14	594783	18	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000392557.8:ENST00000446501.6:ENST00000635152.1:ENST00000547374.5:ENST00000551787.5:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	120	2	6.26113	6.28642	6.31171	0.00594629	4.27166e-4	0.0506158	0.00779962
chr1	2172972	2173057	4360	0	+	0.635294	(0.58,1]	chr1	1007	2	INTRON	INTRON	PRKCZ	ENSG00000067606.17	ENST00000378567.8:ENST00000400921.6:ENST00000461106.6:ENST00000479263.5:ENST00000478770.6:ENST00000505322.5:ENST00000472017.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	116	2	6.23832	6.286345	6.33437	0.00276493	2.24165e-4	0.0332418	0.00490779
chr11	70535030	70535130	5059623	0	-	0.57	(0.523,0.58]	chr11	492663	317	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	123	2	6.03756	6.286099999999999	6.53464	0.00395533	7.92905e-4	0.0406092	0.0120621
chr18	13589739	13589839	7026490	0	+	0.53	(0.523,0.58]	chr18	717646	39	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000677744.1:ENST00000593236.1:ENST00000678400.1:ENST00000586207.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	126	2	5.91127	6.285855	6.66044	0.00312705	0.00111349	0.0356998	0.0152496
chr6	158040631	158040730	3059904	0	+	0.434343	(0.419,0.45]	chr6	297390	66	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	123	2	6.14421	6.28581	6.42741	0.0127879	5.39517e-4	0.0769397	0.00920925
chr19	15642510	15642610	7215378	0	+	0.56	(0.523,0.58]	chr19	737133	5	INTRON	INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	128	2	5.84373	6.28571	6.72769	0.00275419	0.00133116	0.0332418	0.0173248
chr9	120688165	120688265	4386645	0	-	0.45	(0.419,0.45]	chr9	418511	282	INTRON	INTRON	MEGF9	ENSG00000106780.9	ENST00000373930.4	protein_coding	protein_coding	protein_coding	protein_coding	0	128	2	5.95751	6.28545	6.61339	0.0059347	0.0017735	0.0506158	0.02121
chr16	85373543	85373643	6516806	0	+	0.6	(0.58,1]	chr16	646391	142	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	123	2	5.86553	6.28542	6.70531	0.00125905	6.8352e-4	0.0215793	0.0108717
chr3	66035695	66035795	1815839	0	-	0.49	(0.485,0.523]	chr3	187318	266	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	421	2	4.72301	6.2853200000000005	7.84763	2.93546e-4	3.66808e-5	0.00972826	0.0013085
chr7	74496606	74496706	3391793	0	+	0.51	(0.485,0.523]	chr7	327343	421	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	2	693	2	6.16089	6.28476	6.40863	1.20643e-4	1.48929e-6	0.00609355	1.3638e-4
chr12	132742853	132742953	5539929	0	-	0.41	(0.39,0.419]	chr12	546703	3	SS5_PROX	SS5_PROX:INTRON	ANKLE2	ENSG00000176915.15	ENST00000357997.10:ENST00000539605.5:ENST00000538591.5:ENST00000535036.5:ENST00000545623.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	123	2	6.02618	6.284695	6.54321	0.0136549	3.49364e-4	0.0798074	0.00675348
chr14	55283926	55284026	5822510	0	+	0.39	(0.36,0.39]	chr14	569270	47	INTRON	INTRON	FBXO34	ENSG00000178974.11	ENST00000681400.1:ENST00000681904.1:ENST00000679934.1:ENST00000681074.1:ENST00000680682.1:ENST00000680658.1:ENST00000313833.5:ENST00000554940.1:ENST00000440021.1:ENST00000555087.1:ENST00000557647.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	284	2	4.81969	6.284314999999999	7.74894	6.20188e-4	3.36769e-4	0.0146109	0.00660351
chr22	23226230	23226330	7692447	0	+	0.4	(0.39,0.419]	chr22	805046	265	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	125	2	6.05569	6.284245	6.5128	0.00608676	0.0012512	0.0515813	0.0166412
chr6	2491265	2491365	2826855	0	+	0.52	(0.485,0.523]	chr6	277337	18	INTRON	INTRON	GMDS-DT	ENSG00000250903.10	ENST00000659523.1	lncRNA	lncRNA	lncRNA	lncRNA	0	128	2	5.84014	6.284129999999999	6.72812	0.00272951	0.00139792	0.0331786	0.0179863
chr15	73685483	73685583	6150486	0	+	0.4	(0.39,0.419]	chr15	604911	4	SS5_PROX	SS5_PROX:INTRON	CD276	ENSG00000103855.18	ENST00000567189.5:ENST00000537340.6:ENST00000318424.9:ENST00000318443.10:ENST00000560786.6:ENST00000558689.5:ENST00000561213.5:ENST00000560928.5:ENST00000563584.5:ENST00000561416.5:ENST00000560995.5:ENST00000567582.5:ENST00000561260.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	124	2	6.11256	6.28395	6.45534	0.00671435	0.00108325	0.0541693	0.0149525
chr22	46647923	46648023	7744657	0	+	0.5	(0.485,0.523]	chr22	812052	96	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	0	121	2	6.15007	6.283915	6.41776	0.00486906	6.0909e-4	0.0456282	0.0100377
chr7	2377823	2377919	3308501	0	+	0.59375	(0.58,1]	chr7	320690	1	EXON_MRNA	EXON_MRNA:INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000475415.5:ENST00000468611.5:ENST00000465670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	120	2	5.76934	6.283894999999999	6.79845	0.00849371	3.72743e-5	0.0617717	0.00131851
chr20	3344630	3344730	7516234	0	-	0.35	(0.33,0.36]	chr20	784720	5	INTRON	INTRON	DNAAF9	ENSG00000088854.13	ENST00000252032.10	protein_coding	protein_coding	protein_coding	protein_coding	1	290	2	4.66424	6.283645	7.90305	4.69202e-4	3.52138e-4	0.0107244	0.00833075
chr9	134339035	134339135	4260813	0	+	0.74	(0.58,1]	chr9	406311	120	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	120	2	5.96814	6.283135	6.59813	0.00158605	5.06433e-4	0.0245893	0.00881473
chr6	601719	601819	3078177	0	-	0.52	(0.485,0.523]	chr6	299385	21	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	0	120	2	6.04835	6.282885	6.51742	0.00941539	2.15808e-4	0.0653252	0.00477041
chr1	241509768	241509866	695205	0	-	0.397959	(0.39,0.419]	chr1	81965	11	EXON_MRNA	EXON_MRNA:INTRON	FH	ENSG00000091483.8	ENST00000493477.2:ENST00000684483.1:ENST00000684161.1:ENST00000682162.1:ENST00000366560.4:ENST00000682567.1:ENST00000683521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	351	2	5.24258	6.2827850000000005	7.32299	0.00120429	3.87332e-5	0.0210584	0.00135919
chr1	174274617	174274713	279139	0	+	0.46875	(0.45,0.485]	chr1	32678	18	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding	0	121	2	6.03961	6.282575	6.52554	0.0108974	2.5568e-4	0.0707085	0.00541562
chr16	16155310	16155403	6556404	0	-	0.451613	(0.45,0.485]	chr16	653054	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6:ENST00000576204.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	266	2	5.38466	6.2820800000000006	7.1795	0.00137948	4.90008e-5	0.0226729	0.00162093
chr7	138550163	138550263	3502910	0	+	0.4	(0.39,0.419]	chr7	337534	110	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	122	2	6.26783	6.281715	6.2956	0.00920367	6.75278e-4	0.0644228	0.010811
chr19	41327233	41327332	7381071	0	-	0.585859	(0.58,1]	chr19	765964	242	INTRON	INTRON	TGFB1	ENSG00000105329.11	ENST00000598758.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	115	2	6.16945	6.28167	6.39389	0.00387582	1.38027e-4	0.0401256	0.00347229
chr3	13199626	13199726	1691138	0	-	0.68	(0.58,1]	chr3	176566	351	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	115	2	6.16945	6.28167	6.39389	0.00387582	1.38027e-4	0.0401256	0.00347229
chr6	170357925	170358025	3076155	0	+	0.54	(0.523,0.58]	chr6	299169	3	SS3_PROX	SS3_PROX:INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	1	259	2	5.26071	6.281655000000001	7.3026	8.98889e-4	5.86677e-5	0.0178386	0.00184031
chr1	50555198	50555298	475673	0	-	0.57	(0.523,0.58]	chr1	56756	151	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5:ENST00000472808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	120	2	6.2084	6.281645	6.35489	0.00549977	4.95211e-4	0.0489559	0.00865935
chr10	103699712	103699811	4757097	0	-	0.545455	(0.523,0.58]	chr10	454791	62	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	120	2	6.2084	6.281645	6.35489	0.00549977	4.95211e-4	0.0489559	0.00865935
chr1	11834030	11834130	28830	0	+	0.56	(0.523,0.58]	chr1	3503	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLCN6	ENSG00000011021.23	ENST00000312413.10:ENST00000346436.11:ENST00000400892.3:ENST00000376496.4:ENST00000494028.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	121	2	6.1255	6.281525	6.43755	0.00473049	6.23263e-4	0.0449253	0.0101764
chr3	101586595	101586693	1523755	0	+	0.5	(0.485,0.523]	chr3	162106	7	INTRON	INTRON	PCNP	ENSG00000081154.12	ENST00000265260.8:ENST00000498274.5:ENST00000460231.5:ENST00000469941.5:ENST00000486406.5:ENST00000470490.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	260	2	5.29324	6.2814	7.26956	9.50795e-4	5.52772e-5	0.0184489	0.00176494
chr14	104870155	104870255	5925913	0	+	0.68	(0.58,1]	chr14	579942	12	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	129	2	5.47839	6.28115	7.08391	0.0145198	1.42647e-5	0.0823104	6.59187e-4
chr4	2825596	2825696	2000374	0	+	0.55	(0.523,0.58]	chr4	203973	4	SS5_PROX	SS5_PROX:INTRON	SH3BP2	ENSG00000087266.17	ENST00000503393.8:ENST00000504294.5:ENST00000508385.5:ENST00000511663.5:ENST00000512014.5:ENST00000435136.8:ENST00000511185.5:ENST00000511747.6:ENST00000356331.9:ENST00000515737.5:ENST00000515183.5:ENST00000505941.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	277	2	5.80153	6.280849999999999	6.76017	0.00258949	1.04174e-5	0.0321874	5.30168e-4
chr4	151122407	151122507	2350476	0	-	0.41	(0.39,0.419]	chr4	234980	2	SS3_PROX	SS3_PROX:INTRON	SH3D19	ENSG00000109686.19	ENST00000409598.8:ENST00000604030.7:ENST00000304527.8:ENST00000409252.6:ENST00000514152.5:ENST00000478503.6:ENST00000652233.1:ENST00000427414.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	332	2	4.80431	6.28052	7.75673	0.00273656	1.06879e-5	0.0332414	5.39197e-4
chr5	150028685	150028782	2564135	0	+	0.463918	(0.45,0.485]	chr5	254732	12	INTRON	INTRON	HMGXB3	ENSG00000113716.13	ENST00000613459.4:ENST00000503427.5:ENST00000502717.6:ENST00000514469.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	357	2	4.64845	6.280465	7.91248	3.25318e-4	1.13164e-4	0.010266	0.00300243
chr5	90470743	90470843	2721373	0	-	0.5	(0.485,0.523]	chr5	267630	88	INTRON	INTRON	MBLAC2	ENSG00000176055.10	ENST00000316610.7	protein_coding	protein_coding	protein_coding	protein_coding	0	122	2	6.06388	6.280445	6.49701	0.00420849	7.70737e-4	0.0421454	0.0118331
chr21	45499349	45499448	7631298	0	+	0.686869	(0.58,1]	chr21	797812	13	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	0	126	2	5.75506	6.2800650000000005	6.80507	0.00101308	9.38062e-4	0.0191342	0.0135546
chr15	34408135	34408235	6217539	0	-	0.49	(0.485,0.523]	chr15	612286	4	SS3_PROX	SS3_PROX:INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000569781.1:ENST00000565885.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	120	2	6.2048	6.28006	6.35532	0.00545609	5.23665e-4	0.0486984	0.0090184
chr1	119068852	119068952	570156	0	-	0.44	(0.419,0.45]	chr1	65509	228	INTRON	INTRON	WARS2	ENSG00000116874.12	ENST00000235521.5:ENST00000369426.9:ENST00000495746.5:ENST00000497402.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	124	2	6.13171	6.27976	6.42781	0.0080847	0.00115219	0.0602118	0.0157112
chr11	61272260	61272347	5041298	0	-	0.37931	(0.36,0.39]	chr11	488756	1	INTRON	INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10:ENST00000535710.1:ENST00000398808.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	749	2	6.16134	6.279555	6.39777	1.95794e-4	3.06967e-6	0.00788019	2.23467e-4
chr2	7039428	7039528	712666	0	+	0.42	(0.419,0.45]	chr2	83317	4	SS3_PROX	SS3_PROX:INTRON	RNF144A	ENSG00000151692.15	ENST00000320892.11:ENST00000467276.5:ENST00000432850.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	128	2	5.75975	6.279175	6.7986	0.0231013	1.99513e-4	0.102982	0.00452558
chr22	31624440	31624531	7788309	0	-	0.527473	(0.523,0.58]	chr22	817184	2	INTRON	INTRON	PISD	ENSG00000241878.12	ENST00000460723.5:ENST00000439502.7:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5:ENST00000474017.5:ENST00000478893.5:ENST00000491342.1:ENST00000422020.5:ENST00000442379.1:ENST00000429683.1:ENST00000431201.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	119	2	6.14951	6.27908	6.40865	0.00793972	2.80789e-4	0.0596361	0.00578259
chr13	33214399	33214499	5684741	0	-	0.39	(0.36,0.39]	chr13	558196	85	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	123	2	6.14074	6.278919999999999	6.4171	0.00699528	0.0010006	0.0555241	0.0142243
chr17	45642402	45642502	6742743	0	+	0.51	(0.485,0.523]	chr17	679121	2	INTRON	INTRON	LINC02210	ENSG00000204650.14	ENST00000591271.5:ENST00000586362.1:ENST00000585677.1:ENST00000592428.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript	0	140	2	5.53308	6.278585	7.02409	0.00304306	0.00154346	0.0306636	0.02427
chr11	70797842	70797942	5062260	0	-	0.39	(0.36,0.39]	chr11	492701	800	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	769	2	6.22134	6.27816	6.33498	1.3854e-4	5.30545e-6	0.00653779	3.28939e-4
chr17	38726397	38726497	6729347	0	+	0.64	(0.58,1]	chr17	676371	9	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	MLLT6	ENSG00000275023.5	ENST00000621332.5:ENST00000619356.1:ENST00000615741.1:ENST00000615441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	2154	2	5.69733	6.277985	6.85864	2.56886e-6	8.11484e-8	0.00111692	2.08069e-5
chr22	50235121	50235221	7827212	0	-	0.6	(0.58,1]	chr22	821200	12	INTRON	INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	285	2	4.91044	6.2776250000000005	7.64481	8.73852e-4	2.00974e-6	0.0176362	1.67176e-4
chr6	81881245	81881345	3188764	0	-	0.47	(0.45,0.485]	chr6	309343	210	INTRON	INTRON	LINC02542	ENSG00000226453.3	ENST00000667666.1:ENST00000663543.1:ENST00000668303.1:ENST00000660637.1:ENST00000668266.1:ENST00000666226.1:ENST00000418567.2:ENST00000665153.1:ENST00000660534.2:ENST00000684960.1	lncRNA	lncRNA	lncRNA	lncRNA	1	320	2	4.77395	6.277575000000001	7.7812	0.00238913	5.80934e-6	0.0308863	3.51715e-4
chr2	54655609	54655708	800308	0	+	0.585859	(0.58,1]	chr2	90947	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000333896.5:ENST00000496323.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	115	2	6.06599	6.27749	6.48899	0.00477081	1.02074e-4	0.0450109	0.00277572
chr6	7110499	7110599	2838104	0	+	0.49	(0.485,0.523]	chr6	277918	14	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	119	2	6.2217	6.2774350000000005	6.33317	0.00693912	3.65589e-4	0.0553898	0.00700609
chr6	15281951	15282051	2856866	0	+	0.52	(0.485,0.523]	chr6	279178	326	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	0	119	2	6.2217	6.2774350000000005	6.33317	0.00693912	3.65589e-4	0.0553898	0.00700609
chr3	128495111	128495210	1563247	0	+	0.373737	(0.36,0.39]	chr3	165331	47	INTRON	INTRON	GATA2-AS1	ENSG00000244300.3	ENST00000464242.1:ENST00000468377.1:ENST00000669945.1	lncRNA	lncRNA	lncRNA	lncRNA	0	149	2	5.24317	6.277315	7.31146	0.0433841	3.96143e-5	0.138813	0.00138542
chr4	2814410	2814510	2000250	0	+	0.51	(0.485,0.523]	chr4	203928	2	SS3_PROX	SS3_PROX:INTRON	SH3BP2	ENSG00000087266.17	ENST00000503219.5:ENST00000512131.5:ENST00000503393.8:ENST00000510074.5:ENST00000511237.5:ENST00000504294.5:ENST00000508385.5:ENST00000513020.5:ENST00000511663.5:ENST00000512014.5:ENST00000513095.5:ENST00000502260.5:ENST00000435136.8:ENST00000511185.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	126	2	5.692	6.27698	6.86196	0.0171772	7.79323e-5	0.0895975	0.00227427
chr4	151122507	151122607	2350477	0	-	0.39	(0.36,0.39]	chr4	234980	3	SS3_PROX	SS3_PROX:INTRON	SH3D19	ENSG00000109686.19	ENST00000409598.8:ENST00000604030.7:ENST00000304527.8:ENST00000409252.6:ENST00000514152.5:ENST00000478503.6:ENST00000652233.1:ENST00000427414.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	279	2	4.88696	6.2769200000000005	7.66688	7.25302e-4	2.78875e-4	0.0158761	0.00577243
chr22	32819396	32819496	7717803	0	+	0.4	(0.39,0.419]	chr22	807776	169	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	0	140	2	5.57892	6.276835	6.97475	0.00396694	0.00270208	0.0368027	0.033007
chr14	63390231	63390329	5991431	0	-	0.510204	(0.485,0.523]	chr14	587757	1	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556150.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	119	2	6.12521	6.27672	6.42823	0.00823189	2.78987e-4	0.0608959	0.00577243
chr19	6229772	6229871	7321309	0	-	0.525253	(0.523,0.58]	chr19	756087	23	INTRON	INTRON	MLLT1	ENSG00000130382.9	ENST00000252674.9	protein_coding	protein_coding	protein_coding	protein_coding	1	260	2	5.08343	6.27624	7.46905	6.43551e-4	1.01708e-4	0.0148938	0.00277295
chr16	85398832	85398932	6517059	0	+	0.44	(0.419,0.45]	chr16	646391	395	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	125	2	6.04724	6.276085	6.50493	0.00711588	0.00142238	0.0560048	0.0181715
chr9	132071750	132071850	4422746	0	-	0.49	(0.485,0.523]	chr9	422092	392	INTRON	INTRON	MED27	ENSG00000160563.14	ENST00000651950.1:ENST00000357028.6:ENST00000292035.10:ENST00000651555.1:ENST00000650776.1:ENST00000444872.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	122	2	5.8513	6.275625	6.69995	0.0131886	1.26446e-4	0.0785398	0.00325863
chr7	47351435	47351535	3587305	0	-	0.48	(0.45,0.485]	chr7	346030	47	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	120	2	6.26988	6.275589999999999	6.2813	0.00719875	5.20615e-4	0.056408	0.00899129
chr20	45026229	45026328	7485763	0	+	0.343434	(0.33,0.36]	chr20	780008	7	INTRON	INTRON	STK4	ENSG00000101109.12	ENST00000499879.6:ENST00000372806.8:ENST00000372801.5	protein_coding	protein_coding	protein_coding	protein_coding	0	122	2	6.12375	6.275370000000001	6.42699	0.00578704	9.1162e-4	0.0501412	0.0133249
chr6	143427078	143427177	3281715	0	-	0.393939	(0.39,0.419]	chr6	317242	44	UTR3	UTR3:EXON_MRNA	ADAT2	ENSG00000189007.16	ENST00000237283.9:ENST00000606514.5	protein_coding	protein_coding	protein_coding	protein_coding	1	336	2	4.49667	6.2753	8.05393	0.00479147	4.33552e-6	0.045201	2.84538e-4
chr16	85387737	85387837	6516948	0	+	0.38	(0.36,0.39]	chr16	646391	284	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	122	2	6.19443	6.274995	6.35556	0.0077647	8.7159e-4	0.0589564	0.0128912
chr2	39108640	39108740	1127240	0	-	0.47	(0.45,0.485]	chr2	123480	103	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	137	2	5.60298	6.274884999999999	6.94679	0.00292492	0.00214762	0.029882	0.0291055
chr12	105132671	105132770	5315314	0	+	0.40404	(0.39,0.419]	chr12	517710	50	INTRON	INTRON	WASHC4	ENSG00000136051.15	ENST00000311317.8:ENST00000550053.5:ENST00000332180.10:ENST00000620430.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	124	2	6.05569	6.274795	6.4939	0.00628691	0.0012512	0.0523832	0.0166412
chr5	139653463	139653563	2549695	0	+	0.55	(0.523,0.58]	chr5	253168	19	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	1	316	2	5.00393	6.274660000000001	7.54539	0.00134638	8.65732e-6	0.0224436	4.62898e-4
chr12	56167859	56167959	5435463	0	-	0.45	(0.419,0.45]	chr12	533869	4	SS5_PROX	SS5_PROX:INTRON	SMARCC2	ENSG00000139613.12	ENST00000550164.6:ENST00000394023.7:ENST00000347471.8:ENST00000267064.8:ENST00000552674.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	122	2	6.23755	6.274509999999999	6.31147	0.0110181	7.29222e-4	0.0708586	0.0113963
chr16	85233565	85233665	6515404	0	+	0.57	(0.523,0.58]	chr16	646377	58	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	296	2	4.4841	6.274235	8.06437	6.06023e-4	1.89277e-4	0.0100269	0.00776158
chr20	32130913	32131013	7454383	0	+	0.35	(0.33,0.36]	chr20	775905	144	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000442842.5:ENST00000450829.5:ENST00000217315.9:ENST00000417389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	127	2	5.88143	6.2742000000000004	6.66697	0.00376513	0.00169367	0.0395491	0.0204799
chr10	48041729	48041829	4680783	0	-	0.5	(0.485,0.523]	chr10	446508	23	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	0	119	2	6.07443	6.27397	6.47351	0.00899749	2.44978e-4	0.0637469	0.00523316
chr15	76572863	76572962	6328553	0	-	0.515152	(0.485,0.523]	chr15	624236	51	INTRON	INTRON	SCAPER	ENSG00000140386.13	ENST00000563290.6:ENST00000538941.6:ENST00000324767.11:ENST00000303521.10:ENST00000568428.5:ENST00000564757.5:ENST00000563688.5:ENST00000569784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	119	2	6.25753	6.273795	6.29006	0.00613935	4.52177e-4	0.0517628	0.00816702
chr7	47474508	47474608	3588553	0	-	0.47	(0.45,0.485]	chr7	346123	214	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	3	965	2	5.68141	6.27377	6.86613	1.55995e-4	4.22513e-7	0.0069603	5.93802e-5
chr10	18570758	18570858	4642436	0	-	0.45	(0.419,0.45]	chr10	443321	184	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	122	2	6.25998	6.27355	6.28712	0.0106277	7.76382e-4	0.0698136	0.0118807
chr15	62411354	62411454	6122936	0	+	0.42	(0.419,0.45]	chr15	602349	203	INTRON	INTRON	TLN2	ENSG00000171914.17	ENST00000561322.1:ENST00000636159.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	122	2	6.25998	6.27355	6.28712	0.0106277	7.76382e-4	0.0698136	0.0118807
chr11	70803423	70803523	5062317	0	-	0.48	(0.45,0.485]	chr11	492707	45	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5:ENST00000460048.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	123	2	6.02069	6.273490000000001	6.52629	0.00466172	0.00101549	0.044542	0.0143256
chr12	57111271	57111352	5439770	0	-	0.493827	(0.485,0.523]	chr12	535338	3	UTR5	UTR5:EXON_MRNA:INTRON	STAT6	ENSG00000166888.12	ENST00000300134.8:ENST00000651176.1:ENST00000553533.2:ENST00000554764.6:ENST00000538913.6:ENST00000556155.5:ENST00000537215.6:ENST00000454075.7:ENST00000640254.2:ENST00000553499.5:ENST00000553275.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	680	2	6.01869	6.273365	6.52804	1.63273e-4	9.98777e-7	0.00716861	1.05101e-4
chr3	188599668	188599768	1656267	0	+	0.41	(0.39,0.419]	chr3	173807	148	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000494233.5:ENST00000462758.1:ENST00000471917.1:ENST00000487347.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	125	2	5.9965	6.273185	6.54987	0.00571127	0.00145172	0.0498083	0.0184691
chr1	44259617	44259717	459770	0	-	0.48	(0.45,0.485]	chr1	55317	28	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000452396.5	protein_coding	protein_coding	protein_coding	protein_coding	0	121	2	6.13678	6.2728850000000005	6.40899	0.00574958	7.46272e-4	0.0499659	0.0115813
chr20	456357	456457	7512271	0	-	0.43	(0.419,0.45]	chr20	784037	51	INTRON	INTRON	TBC1D20	ENSG00000125875.15	ENST00000680792.1:ENST00000354200.5:ENST00000461304.5:ENST00000681539.1:ENST00000679741.1:ENST00000680990.1:ENST00000681129.1:ENST00000681414.1:ENST00000681441.1:ENST00000680284.1:ENST00000681777.1:ENST00000681389.1:ENST00000679895.1:ENST00000680491.1:ENST00000679451.1:ENST00000679953.1:ENST00000461188.6:ENST00000680521.1:ENST00000681551.1:ENST00000679973.1:ENST00000680911.1:ENST00000679944.1:ENST00000681636.1:ENST00000680106.1:ENST00000494633.1:ENST00000680050.1:ENST00000681742.1:ENST00000680515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	122	2	6.09518	6.272349999999999	6.44952	0.0138177	5.09118e-4	0.0803169	0.00884498
chr21	42848136	42848235	7675453	0	-	0.555556	(0.523,0.58]	chr21	802287	45	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	1	285	2	5.91893	6.272265	6.6256	0.00333843	7.09786e-6	0.0368376	4.04994e-4
chrX	123680852	123680952	8098884	0	-	0.36	(0.33,0.36]	chrX	844533	87	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5:ENST00000433883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	121	2	6.01085	6.272225	6.5336	0.011821	3.03099e-4	0.0739406	0.00611977
chr21	44865980	44866065	7678501	0	-	0.611765	(0.58,1]	chr21	802772	2	SS3_PROX	SS3_PROX:INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	2772	2	5.45001	6.27213	7.09425	7.20619e-7	5.6566e-7	7.30832e-4	8.45147e-5
chr3	195241794	195241893	1982444	0	-	0.484848	(0.45,0.485]	chr3	201717	146	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000429994.5:ENST00000418940.5:ENST00000494175.1:ENST00000455281.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	120	2	6.03961	6.271845	6.50408	0.0108974	2.71658e-4	0.0707085	0.00565001
chr1	227767253	227767347	357645	0	+	0.553191	(0.523,0.58]	chr1	40317	4	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	SNAP47	ENSG00000143740.15	ENST00000681827.1:ENST00000679575.1:ENST00000680854.1:ENST00000681006.1:ENST00000366760.5:ENST00000681447.1:ENST00000680992.1:ENST00000680695.1:ENST00000366759.9:ENST00000315781.10:ENST00000681685.1:ENST00000681678.1:ENST00000681242.1:ENST00000681149.1:ENST00000418653.6:ENST00000617596.5:ENST00000681929.1:ENST00000478768.3:ENST00000426344.6:ENST00000680202.1:ENST00000679561.1:ENST00000681465.1:ENST00000491439.2:ENST00000681554.1:ENST00000681252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	122	2	5.82039	6.27144	6.72249	0.0139724	1.11891e-4	0.0805959	0.00298349
chr13	113331176	113331275	5753242	0	-	0.555556	(0.523,0.58]	chr13	564094	47	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	0	120	2	6.1255	6.271414999999999	6.41733	0.00490887	6.23263e-4	0.0457614	0.0101764
chr5	302079	302179	2377943	0	+	0.57	(0.523,0.58]	chr5	237467	253	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	264	2	4.92404	6.27116	7.61828	4.75424e-4	1.65466e-4	0.0125953	0.00395841
chr10	133350086	133350186	4783435	0	-	0.66	(0.58,1]	chr10	457517	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000226699	ENSG00000226699.1	ENST00000452591.1	lncRNA	lncRNA	lncRNA	lncRNA	0	118	2	6.00079	6.271095000000001	6.5414	0.00179018	4.59827e-4	0.0262802	0.00821903
chr21	44872254	44872353	7678565	0	-	0.424242	(0.419,0.45]	chr21	802773	63	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	933	2	5.14417	6.270295	7.39642	3.84142e-4	3.70422e-5	0.0112539	0.00131524
chr1	8601802	8601902	393568	0	-	0.47	(0.45,0.485]	chr1	45045	111	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	945	2	5.99719	6.2701899999999995	6.54319	6.65185e-5	1.56203e-6	0.00453017	1.40814e-4
chr20	36769890	36769986	7556214	0	-	0.5	(0.485,0.523]	chr20	789054	15	INTRON	INTRON	DSN1	ENSG00000149636.16	ENST00000426836.5:ENST00000373734.8:ENST00000480153.5:ENST00000473615.5:ENST00000373750.9:ENST00000448110.6:ENST00000373740.7:ENST00000447406.1:ENST00000438549.5:ENST00000492703.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	120	2	6.12191	6.2698350000000005	6.41776	0.00486906	6.58016e-4	0.0456282	0.0106077
chr1	145913558	145913656	578741	0	-	0.428571	(0.419,0.45]	chr1	66348	6	INTRON	INTRON	PEX11B	ENSG00000131779.11	ENST00000369306.8:ENST00000537888.1	protein_coding	protein_coding	protein_coding	protein_coding	0	123	2	6.13171	6.26979	6.40787	0.00835435	0.00115219	0.0613588	0.0157112
chr18	74601230	74601330	7089283	0	+	0.5	(0.485,0.523]	chr18	722412	29	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000582337.5	protein_coding	protein_coding	protein_coding	protein_coding	0	119	2	6.2048	6.2693449999999995	6.33389	0.00567224	5.23665e-4	0.0496143	0.0090184
chr5	62553235	62553335	2430951	0	+	0.41	(0.39,0.419]	chr5	242260	15	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7:ENST00000511713.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	121	2	6.26783	6.26933	6.27083	0.00920367	7.20415e-4	0.0644228	0.0112959
chr5	861053	861152	2607965	0	-	0.646465	(0.58,1]	chr5	259417	101	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	0	114	2	6.16945	6.269275	6.3691	0.00387582	1.49225e-4	0.0401256	0.00367368
chr6	158040432	158040532	3059902	0	+	0.48	(0.45,0.485]	chr6	297390	64	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	120	2	6.1915	6.269024999999999	6.34655	0.00642055	6.44145e-4	0.0529785	0.0104271
chr20	49664398	49664498	7575680	0	-	0.42	(0.419,0.45]	chr20	791530	73	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	1	337	2	4.87219	6.2688950000000006	7.6656	0.00272059	1.6898e-5	0.033174	7.44477e-4
chr22	29827700	29827800	7784834	0	-	0.53	(0.523,0.58]	chr22	816449	1	SS3_PROX	SS3_PROX:INTRON	ASCC2	ENSG00000100325.15	ENST00000542393.5:ENST00000307790.8:ENST00000458594.5:ENST00000397771.6:ENST00000449900.6:ENST00000431535.5:ENST00000495967.5:ENST00000412689.5:ENST00000465667.6:ENST00000495681.5:ENST00000462454.1:ENST00000453160.5:ENST00000460313.1:ENST00000454854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	907	2	6.14434	6.2687349999999995	6.39313	1.26204e-4	2.9543e-7	0.00622672	4.67637e-5
chr1	29280736	29280832	78828	0	+	0.5	(0.485,0.523]	chr1	8965	2	INTRON	INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2:ENST00000415600.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	126	2	5.65791	6.2684	6.87889	0.0181582	7.40532e-5	0.0921579	0.00219184
chr11	96244895	96244995	5112585	0	-	0.31	(0.29,0.33]	chr11	496566	1510	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	0	126	2	5.83477	6.26828	6.70179	0.00252058	0.00150459	0.031696	0.0188758
chr16	85588830	85588930	6518961	0	+	0.65	(0.58,1]	chr16	646396	321	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	116	2	6.0945	6.268045	6.44159	0.00221069	3.47472e-4	0.0295736	0.00673552
chr3	120630886	120630984	1887416	0	-	0.418367	(0.39,0.419]	chr3	191478	20	INTRON	INTRON	HGD	ENSG00000113924.12	ENST00000283871.10:ENST00000492108.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	426	2	3.94302	6.2678	8.59258	0.00108422	1.25018e-4	0.0149646	0.0061986
chr12	120997793	120997877	5341115	0	+	0.535714	(0.523,0.58]	chr12	521575	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000400024.6:ENST00000560968.5:ENST00000402929.5:ENST00000535955.5:ENST00000538626.2:ENST00000538646.5:ENST00000541924.5:ENST00000544574.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2:ENST00000543255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	318	2	4.48423	6.26774	8.05125	0.00374297	1.65795e-6	0.0393941	1.46243e-4
chr16	8711636	8711736	6381506	0	+	0.53	(0.523,0.58]	chr16	631147	282	INTRON	INTRON	ABAT	ENSG00000183044.12	ENST00000564714.5:ENST00000268251.13:ENST00000563992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	120	2	5.90997	6.267620000000001	6.62527	0.012016	1.49357e-4	0.0743424	0.00367368
chr19	36849801	36849901	7371653	0	-	0.58	(0.523,0.58]	chr19	764197	4	SS5_PROX	SS5_PROX:INTRON	ZNF790	ENSG00000197863.9	ENST00000613249.4:ENST00000614179.4:ENST00000528994.5:ENST00000586323.5	protein_coding	protein_coding	protein_coding	protein_coding	0	120	2	5.90997	6.267620000000001	6.62527	0.012016	1.49357e-4	0.0743424	0.00367368
chr16	87744917	87745016	6656532	0	-	0.535354	(0.523,0.58]	chr16	665900	20	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	128	2	5.5868	6.26755	6.9483	0.020474	5.65196e-5	0.0979776	0.00179471
chr16	2027718	2027815	6372239	0	+	0.597938	(0.58,1]	chr16	629168	1	INTRON	INTRON	SLC9A3R2	ENSG00000065054.14	ENST00000567504.5:ENST00000424542.7:ENST00000432365.6	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	6.03271	6.267505	6.5023	0.00194503	4.18183e-4	0.0275844	0.00770005
chr6	507292	507392	3077213	0	-	0.56	(0.523,0.58]	chr6	299297	72	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	0	118	2	6.19774	6.26726	6.33678	0.0072907	3.44853e-4	0.0567247	0.00672121
chr19	33505567	33505666	7365909	0	-	0.59596	(0.58,1]	chr19	763467	42	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000651646.1:ENST00000590408.1:ENST00000593163.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	114	2	6.24245	6.2672550000000005	6.29206	0.00334087	1.89825e-4	0.0368376	0.0043642
chr3	9413606	9413706	1402240	0	+	0.4	(0.39,0.419]	chr3	150072	153	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	125	2	5.96596	6.267005	6.56805	0.00553508	0.00156652	0.0491917	0.0194594
chr1	8553182	8553282	393078	0	-	0.52	(0.485,0.523]	chr1	45029	115	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000469251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	119	2	5.99474	6.2668099999999995	6.53888	0.0103305	2.02788e-4	0.0684871	0.0045746
chr21	45454522	45454621	7630808	0	+	0.575758	(0.523,0.58]	chr21	797656	487	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	118	2	6.12478	6.266715	6.40865	0.00829271	2.80789e-4	0.0610772	0.00578259
chr9	114588418	114588518	4227458	0	+	0.48	(0.45,0.485]	chr9	401133	3	SS5_PROX	SS5_PROX:INTRON	ATP6V1G1	ENSG00000136888.8	ENST00000677115.1:ENST00000677452.1:ENST00000678234.1:ENST00000374050.4:ENST00000473413.1:ENST00000677498.1:ENST00000679150.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	119	2	6.21295	6.266405000000001	6.31986	0.00810629	4.53935e-4	0.0602166	0.00818426
chr7	2440384	2440484	3308907	0	+	0.44	(0.419,0.45]	chr7	320715	66	UTR3	UTR3:EXON_MRNA:INTRON	CHST12	ENSG00000136213.10	ENST00000258711.7:ENST00000618655.2:ENST00000313156.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	123	2	6.1041	6.265955	6.42781	0.0080847	0.00123471	0.0602118	0.0164614
chr10	132712652	132712751	4618594	0	+	0.50505	(0.485,0.523]	chr10	441181	18	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000487614.1:ENST00000498337.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	118	2	6.17426	6.265895	6.35753	0.00754939	3.41236e-4	0.0578091	0.00667174
chr11	72773448	72773547	5070676	0	-	0.50505	(0.485,0.523]	chr11	493498	137	INTRON	INTRON	ARAP1:STARD10	ENSG00000186635.15:ENSG00000214530.10	ENST00000359373.9:ENST00000334805.11:ENST00000543304.5:ENST00000538536.5:ENST00000538437.5:ENST00000545082.5:ENST00000537947.5:ENST00000542989.5:ENST00000546314.5:ENST00000535267.1:ENST00000539138.1:ENST00000535054.1:ENST00000536290.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	120	2	6.09319	6.265585	6.43798	0.00469187	7.11715e-4	0.0447158	0.0112082
chr19	36851347	36851440	7249345	0	+	0.483871	(0.45,0.485]	chr19	743114	3	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF345	ENSG00000251247.12	ENST00000589046.1:ENST00000586933.5:ENST00000420450.6:ENST00000614069.4:ENST00000532141.5:ENST00000526123.5:ENST00000432005.6:ENST00000529555.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	121	2	5.90167	6.2649799999999995	6.62829	0.0137135	1.90839e-4	0.0799457	0.0043642
chr12	132544714	132544814	5353063	0	+	0.51	(0.485,0.523]	chr12	523670	164	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	118	2	6.10004	6.264135	6.42823	0.00860355	2.78987e-4	0.0623467	0.00577243
chr1	43557828	43557928	107017	0	+	0.5	(0.485,0.523]	chr1	13192	35	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	118	2	6.24485	6.26402	6.28319	0.00665813	4.20832e-4	0.0540577	0.00773187
chr17	2662380	2662480	6667133	0	+	0.53	(0.523,0.58]	chr17	667937	2	SS3_PROX	SS3_PROX:INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000576586.5:ENST00000397195.10:ENST00000676201.1:ENST00000575477.5:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000570400.1:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000676456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	129	2	5.73609	6.2640150000000006	6.79194	0.00243746	0.0017613	0.0311222	0.0211077
chr6	37823014	37823114	2908874	0	+	0.42	(0.419,0.45]	chr6	285643	26	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	0	129	2	5.66212	6.2640150000000006	6.86591	0.0266819	1.65832e-4	0.111563	0.00396002
chr1	58659004	58659103	496196	0	-	0.343434	(0.33,0.36]	chr1	59127	44	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MYSM1	ENSG00000162601.11	ENST00000655340.1:ENST00000493821.6:ENST00000472487.6:ENST00000622766.1:ENST00000665648.1:ENST00000659812.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	266	2	5.11906	6.263755	7.40845	9.32977e-4	1.27314e-4	0.0182677	0.00327695
chr14	104720874	104720972	5925635	0	+	0.622449	(0.58,1]	chr14	579884	22	UTR3	UTR3:EXON_MRNA	INF2	ENSG00000203485.14	ENST00000330634.11:ENST00000392634.9:ENST00000675207.1:ENST00000675638.1	protein_coding	protein_coding	protein_coding	protein_coding	0	137	2	5.45872	6.263674999999999	7.06863	0.00211999	5.64522e-4	0.0239744	0.0138715
chr16	87739824	87739923	6656479	0	-	0.494949	(0.485,0.523]	chr16	665892	88	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	122	2	5.78967	6.263615	6.73756	0.0146211	1.13097e-4	0.0826064	0.0030016
chr15	99602409	99602509	6198705	0	+	0.45	(0.419,0.45]	chr15	609963	3	SS5_PROX	SS5_PROX:INTRON	MEF2A	ENSG00000068305.18	ENST00000560493.5:ENST00000354410.9:ENST00000558812.5:ENST00000558856.5:ENST00000685785.1:ENST00000559036.5:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000558049.5:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1:ENST00000559903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	121	2	6.19164	6.263529999999999	6.33542	0.0118587	6.85495e-4	0.0740271	0.0108846
chr2	98488871	98488971	855800	0	+	0.46	(0.45,0.485]	chr2	96866	434	INTRON	INTRON	INPP4A	ENSG00000040933.16	ENST00000409016.8:ENST00000409851.8:ENST00000074304.9:ENST00000409463.5:ENST00000409540.7	protein_coding	protein_coding	protein_coding	protein_coding	0	124	2	5.92705	6.26328	6.59951	0.00408353	0.00129636	0.0413652	0.0170746
chr9	93600070	93600170	4183890	0	+	0.43	(0.419,0.45]	chr9	397705	228	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	121	2	6.14421	6.263175	6.38214	0.0127879	6.07209e-4	0.0769397	0.0100293
chr5	883251	883350	2608209	0	-	0.333333	(0.33,0.36]	chr5	259476	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	130	2	5.57634	6.263165	6.94999	0.0237329	9.33117e-5	0.10525	0.00260062
chr19	5816897	5816997	7195555	0	+	0.44	(0.419,0.45]	chr19	733105	111	INTRON	INTRON	NRTN	ENSG00000171119.3	ENST00000303212.3	protein_coding	protein_coding	protein_coding	protein_coding	0	121	2	6.21478	6.2631250000000005	6.31147	0.011428	7.29222e-4	0.0723462	0.0113963
chr22	36329945	36330044	7806818	0	-	0.444444	(0.419,0.45]	chr22	818135	11	INTRON	INTRON	MYH9	ENSG00000100345.23	ENST00000216181.11:ENST00000685801.1:ENST00000692930.1:ENST00000685187.1:ENST00000691687.1:ENST00000685191.1:ENST00000688137.1:ENST00000401701.1:ENST00000691296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	121	2	6.21478	6.2631250000000005	6.31147	0.011428	7.29222e-4	0.0723462	0.0113963
chr20	58688748	58688847	7498565	0	+	0.282828	[0,0.29]	chr20	781977	94	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1:ENST00000413559.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	1	248	2	5.29931	6.262715	7.22612	4.56421e-4	4.30801e-5	0.0123039	0.00147776
chr9	137722960	137723059	4265520	0	+	0.626263	(0.58,1]	chr9	407352	53	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000460486.3:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	115	2	5.92528	6.262485	6.59969	0.0062948	7.15008e-5	0.0523832	0.00213784
chr19	34391695	34391795	7243267	0	+	0.51	(0.485,0.523]	chr19	741718	97	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	132	2	5.65601	6.262435	6.86886	0.00224147	0.00208565	0.0287557	0.024843
chr22	29894455	29894555	7709472	0	+	0.45	(0.419,0.45]	chr22	806655	107	INTRON	INTRON	MTMR3	ENSG00000100330.16	ENST00000333027.7:ENST00000401950.7:ENST00000495098.5:ENST00000445401.5:ENST00000323630.9:ENST00000351488.7:ENST00000415511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	130	2	5.79433	6.262370000000001	6.73041	0.00486702	0.00262626	0.0456282	0.0278348
chr12	112424815	112424914	5331533	0	+	0.555556	(0.523,0.58]	chr12	520142	53	INTRON	INTRON	PTPN11	ENSG00000179295.19	ENST00000688597.1:ENST00000692624.1:ENST00000685487.1:ENST00000690210.1:ENST00000639857.2:ENST00000392597.5:ENST00000687906.1:ENST00000351677.7:ENST00000635625.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	118	2	6.235	6.262315	6.28963	0.00618741	4.59688e-4	0.0519442	0.00821903
chr5	81134052	81134151	2469997	0	+	0.414141	(0.39,0.419]	chr5	246654	65	INTRON	INTRON	RASGRF2	ENSG00000113319.13	ENST00000265080.9:ENST00000503795.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	270	2	5.24393	6.262295	7.28066	0.0015472	1.01072e-4	0.0243048	0.00276281
chr19	49796686	49796783	7283449	0	+	0.42268	(0.419,0.45]	chr19	748939	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	AP2A1	ENSG00000196961.13	ENST00000354293.10:ENST00000600199.1:ENST00000359032.9:ENST00000597774.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	123	2	5.90909	6.262125	6.61516	0.0184411	3.27987e-4	0.0927235	0.00646148
chr8	25239178	25239278	3774630	0	+	0.45	(0.419,0.45]	chr8	363466	539	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000410074.5:ENST00000481100.5	protein_coding	protein_coding	protein_coding	protein_coding	0	123	2	6.07595	6.261715	6.44748	0.00782663	0.00132452	0.0592048	0.0173138
chr12	26503158	26503258	5398255	0	-	0.5	(0.485,0.523]	chr12	528527	75	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	1	262	2	4.94059	6.261710000000001	7.58283	5.05626e-4	1.63137e-4	0.0130427	0.00391234
chr5	116212547	116212647	2511095	0	+	0.32	(0.29,0.33]	chr5	249634	780	INTRON	INTRON	COMMD10	ENSG00000145781.9	ENST00000507356.5:ENST00000274458.9:ENST00000632434.1:ENST00000515539.5:ENST00000506589.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	121	2	5.82767	6.261100000000001	6.69453	0.0124924	1.39595e-4	0.0761905	0.00349292
chr14	104891221	104891318	5926138	0	+	0.597938	(0.58,1]	chr14	579999	11	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	1	237	2	5.3376	6.260955	7.18431	4.34792e-4	2.41008e-5	0.0119405	9.61888e-4
chr1	178164766	178164866	287248	0	+	0.39	(0.36,0.39]	chr1	32929	389	INTRON	INTRON	RASAL2	ENSG00000075391.18	ENST00000367649.8:ENST00000465723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	120	2	6.17733	6.2609	6.34447	0.0104543	5.89187e-4	0.0688771	0.00981079
chr16	85589629	85589729	6518969	0	+	0.43	(0.419,0.45]	chr16	646396	329	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	2	751	2	5.94098	6.260795	6.58061	3.7229e-4	2.08556e-6	0.011082	1.71281e-4
chr12	122093862	122093962	5343527	0	+	0.55	(0.523,0.58]	chr12	521864	142	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	1	332	2	5.32295	6.2607800000000005	7.19861	7.04378e-4	2.60365e-5	0.0156243	0.00101533
chr14	54789738	54789838	5821694	0	+	0.56	(0.523,0.58]	chr14	569165	9	UTR3	UTR3:EXON_MRNA	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9	protein_coding	protein_coding	protein_coding	protein_coding	0	130	2	5.69834	6.26068	6.82302	0.00229691	0.00194036	0.0302623	0.0225083
chr19	7268995	7269095	7324966	0	-	0.55	(0.523,0.58]	chr19	756833	7	INTRON	INTRON	INSR	ENSG00000171105.14	ENST00000341500.9:ENST00000302850.10:ENST00000598216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	135	2	5.5788	6.259930000000001	6.94106	0.00262418	0.00183008	0.0278348	0.0266451
chr17	28120202	28120302	6704880	0	+	0.44	(0.419,0.45]	chr17	673022	714	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	121	2	6.07002	6.25977	6.44952	0.0143746	5.09118e-4	0.0821732	0.00884498
chr11	73332325	73332425	4890042	0	+	0.42	(0.419,0.45]	chr11	471958	201	INTRON	INTRON	ARHGEF17	ENSG00000110237.5	ENST00000263674.4:ENST00000544519.1	protein_coding	protein_coding	protein_coding	protein_coding	0	121	2	6.23716	6.2596050000000005	6.28205	0.0102557	8.82327e-4	0.0684871	0.0129974
chr10	79175416	79175516	4533111	0	+	0.61	(0.58,1]	chr10	432438	129	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	121	2	5.82964	6.258815	6.68799	0.00130716	7.58111e-4	0.0220198	0.0117078
chrX	123865019	123865118	7946330	0	+	0.343434	(0.33,0.36]	chrX	831426	41	INTRON	INTRON	XIAP	ENSG00000101966.13	ENST00000422098.5:ENST00000481776.5:ENST00000434753.7:ENST00000497906.5:ENST00000468691.5:ENST00000430625.1:ENST00000371199.8:ENST00000497640.1:ENST00000355640.3:ENST00000468503.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	119	2	6.21073	6.258765	6.3068	0.00843224	5.61859e-4	0.0617623	0.00948267
chr3	182976294	182976393	1964440	0	-	0.494949	(0.485,0.523]	chr3	199617	102	INTRON	INTRON	DCUN1D1	ENSG00000043093.15	ENST00000292782.9:ENST00000632685.1:ENST00000460412.6:ENST00000469954.5:ENST00000492563.1:ENST00000497606.5:ENST00000487822.5:ENST00000466812.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	118	2	6.0218	6.2587150000000005	6.49563	0.00985907	2.29841e-4	0.0670775	0.00498593
chr4	108658346	108658446	2105153	0	+	0.35	(0.33,0.36]	chr4	214082	3	INTRON	INTRON	OSTC	ENSG00000198856.13	ENST00000613215.4:ENST00000361564.9:ENST00000512478.2	protein_coding	protein_coding	protein_coding	protein_coding	0	120	2	6.15136	6.258405	6.36545	0.00644852	8.48155e-4	0.0530227	0.0126615
chr22	17799941	17800040	7757524	0	-	0.484848	(0.45,0.485]	chr22	812998	58	INTRON	INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000580469.1:ENST00000577821.5:ENST00000579997.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	119	2	6.1915	6.258315	6.32513	0.00666704	6.44145e-4	0.0540577	0.0104271
chr10	34727607	34727707	4670934	0	-	0.38	(0.36,0.39]	chr10	445543	308	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	137	2	5.4139	6.258285	7.10267	0.0340874	7.25586e-5	0.125059	0.00216169
chr3	10887193	10887293	1408404	0	+	0.36	(0.33,0.36]	chr3	151278	117	INTRON	INTRON	SLC6A11	ENSG00000132164.10	ENST00000254488.7	protein_coding	protein_coding	protein_coding	protein_coding	1	330	2	6.19318	6.258045	6.32291	0.00694591	4.79369e-6	0.0553908	3.06695e-4
chr3	31688210	31688310	1727458	0	-	0.55	(0.523,0.58]	chr3	178975	37	INTRON	INTRON	OSBPL10	ENSG00000144645.15	ENST00000429492.6:ENST00000396556.7:ENST00000438237.6:ENST00000673388.1:ENST00000467598.5:ENST00000472175.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	122	2	5.94389	6.2578	6.57171	0.00369199	0.0010207	0.0389784	0.0143498
chr1	40309837	40309937	451998	0	-	0.59	(0.58,1]	chr1	54430	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	COL9A2	ENSG00000049089.15	ENST00000372748.8:ENST00000482722.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	116	2	6.03271	6.25753	6.48235	0.00202884	4.18183e-4	0.0283135	0.00770005
chr16	81679725	81679824	6510108	0	+	0.545455	(0.523,0.58]	chr16	645979	7	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	1	255	2	5.15698	6.256845	7.35671	8.06717e-4	8.10397e-5	0.0168786	0.00233934
chr2	54207099	54207199	797284	0	+	0.28	[0,0.29]	chr2	90756	639	INTRON	INTRON	ACYP2	ENSG00000170634.13	ENST00000607452.6:ENST00000394666.7:ENST00000303536.8:ENST00000494922.6:ENST00000606865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	115	2	6.11193	6.25662	6.40131	0.00480124	2.30221e-4	0.0452644	0.00498593
chr7	73599125	73599225	3602848	0	-	0.51	(0.485,0.523]	chr7	347629	2	SS5_PROX	SS5_PROX:INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	309	2	4.73649	6.256575	7.77666	0.00227835	4.41961e-6	0.0301641	2.8801e-4
chr6	2268018	2268116	2824604	0	+	0.5	(0.485,0.523]	chr6	277256	18	INTRON	INTRON	GMDS-DT	ENSG00000250903.10	ENST00000657072.1:ENST00000529893.6:ENST00000659523.1:ENST00000659643.1:ENST00000660978.1:ENST00000691004.1:ENST00000664738.1:ENST00000532124.6:ENST00000691547.1:ENST00000663428.1:ENST00000654526.1:ENST00000670895.1:ENST00000532564.8:ENST00000685772.1:ENST00000687264.1:ENST00000660533.1:ENST00000531092.6:ENST00000524770.6:ENST00000657589.1:ENST00000607519.2:ENST00000456943.6:ENST00000525811.5:ENST00000534441.5:ENST00000533653.5:ENST00000534468.1:ENST00000530346.6:ENST00000662000.1:ENST00000665610.1:ENST00000654970.1	lncRNA	lncRNA	lncRNA	lncRNA	1	309	2	4.82011	6.25655	7.69299	0.00193126	5.79324e-6	0.0275437	3.51119e-4
chr17	29130591	29130688	6876468	0	-	0.515464	(0.485,0.523]	chr17	697994	17	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000590242.5:ENST00000528564.2:ENST00000528322.6:ENST00000585573.6:ENST00000533420.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	122	2	5.94031	6.256225000000001	6.57214	0.0036605	0.00107389	0.0389784	0.0148869
chr4	1315800	1315900	1995193	0	+	0.68	(0.58,1]	chr4	203251	2	SS5_PROX	SS5_PROX:INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000513301.5:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000512842.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	113	2	6.1942	6.2562	6.3182	0.00368616	1.74994e-4	0.0389784	0.00410754
chr6	677942	678042	3078946	0	-	0.5	(0.485,0.523]	chr6	299429	203	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9:ENST00000443083.5	protein_coding	protein_coding	protein_coding	protein_coding	0	120	2	6.03396	6.25578	6.4776	0.00436205	8.35707e-4	0.0427656	0.012554
chr17	44041155	44041254	6910328	0	-	0.525253	(0.523,0.58]	chr17	703395	5	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	6.12478	6.254935	6.38509	0.00829271	3.00426e-4	0.0610772	0.00607383
chr9	93600170	93600270	4183891	0	+	0.53	(0.523,0.58]	chr9	397705	229	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	6.12478	6.254935	6.38509	0.00829271	3.00426e-4	0.0610772	0.00607383
chr12	26414004	26414104	5397345	0	-	0.41	(0.39,0.419]	chr12	528440	22	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000451599.6:ENST00000538984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	123	2	5.9965	6.25465	6.5128	0.00608676	0.00145172	0.0515813	0.0184691
chr10	94342539	94342637	4731939	0	-	0.438776	(0.419,0.45]	chr10	451710	4	INTRON	INTRON	NOC3L	ENSG00000173145.11	ENST00000371361.3	protein_coding	protein_coding	protein_coding	protein_coding	0	126	2	5.72794	6.25461	6.78128	0.0242188	2.09196e-4	0.106588	0.0046683
chr18	48846810	48846910	7059746	0	+	0.43	(0.419,0.45]	chr18	720358	291	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000587860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	276	2	5.4243	6.25444	7.08458	0.00263222	6.68467e-5	0.0325876	0.0020305
chr2	10368477	10368577	719084	0	+	0.53	(0.523,0.58]	chr2	84032	137	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	117	2	6.09961	6.25413	6.40865	0.00866655	2.80789e-4	0.0623824	0.00578259
chr2	239988984	239989077	1393716	0	-	0.483871	(0.45,0.485]	chr2	148853	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	118	2	6.21295	6.254020000000001	6.29509	0.00810629	4.85904e-4	0.0602166	0.00857996
chr19	1169941	1170040	7305752	0	-	0.626263	(0.58,1]	chr19	753058	9	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	113	2	6.24245	6.253945	6.26544	0.00334087	2.06156e-4	0.0368376	0.00461335
chr19	2050105	2050202	7308296	0	-	0.608247	(0.58,1]	chr19	753574	31	INTRON	INTRON	MKNK2	ENSG00000099875.16	ENST00000309340.11:ENST00000250896.9:ENST00000586828.5:ENST00000589509.5:ENST00000589534.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	131	2	5.54978	6.253585	6.95739	0.00165911	7.23847e-4	0.0202545	0.0158739
chr19	33506361	33506460	7365917	0	-	0.525253	(0.523,0.58]	chr19	763467	50	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000651646.1:ENST00000590408.1:ENST00000593163.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	117	2	6.074	6.25292	6.43184	0.00906277	2.62665e-4	0.0637469	0.00552802
chr22	46648023	46648122	7744658	0	+	0.525253	(0.523,0.58]	chr22	812052	97	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	0	134	2	5.5788	6.252815	6.92683	0.00262418	0.00188118	0.0278348	0.0270971
chr19	5818390	5818490	7195570	0	+	0.53	(0.523,0.58]	chr19	733105	126	INTRON	INTRON	NRTN	ENSG00000171119.3	ENST00000303212.3	protein_coding	protein_coding	protein_coding	protein_coding	1	261	2	4.89568	6.252535	7.60939	4.84115e-4	1.80282e-4	0.012746	0.00419938
chr10	79175616	79175715	4533113	0	+	0.565657	(0.523,0.58]	chr10	432438	131	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	313	2	5.03532	6.25216	7.469	0.001264	1.10612e-5	0.0216365	5.52474e-4
chr5	648116	648216	2378763	0	+	0.55	(0.523,0.58]	chr5	237645	2	SS5_PROX	SS5_PROX:INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	311	2	4.56174	6.252090000000001	7.94244	0.00322317	2.37532e-6	0.0362983	1.87465e-4
chr22	46639655	46639755	7744574	0	+	0.46	(0.45,0.485]	chr22	812052	13	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	0	118	2	6.24422	6.251545	6.25887	0.00748565	5.58345e-4	0.0576451	0.00944382
chr9	123885217	123885317	4401446	0	-	0.37	(0.36,0.39]	chr9	419733	58	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	0	122	2	6.02697	6.251545	6.47612	0.00632423	0.00133548	0.0524897	0.0173572
chrX	71216972	71217068	7903342	0	+	0.53125	(0.523,0.58]	chrX	827967	20	UTR5	UTR5:EXON_MRNA:INTRON	GJB1	ENSG00000169562.13	ENST00000674844.1:ENST00000674549.1:ENST00000374029.2:ENST00000675209.1:ENST00000675368.1:ENST00000647424.1:ENST00000675609.1:ENST00000646835.1:ENST00000447581.2	protein_coding	protein_coding	protein_coding	protein_coding	0	132	2	5.61976	6.251505	6.88325	0.00236826	0.00204616	0.0283511	0.0259199
chr11	9290027	9290126	4990953	0	-	0.434343	(0.419,0.45]	chr11	483068	11	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	378	2	4.3553	6.251145	8.14699	3.78456e-4	3.76722e-4	0.011139	0.0071917
chr8	143321586	143321686	4095543	0	-	0.69	(0.58,1]	chr8	389124	2	SS3_PROX	SS3_PROX:INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	120	2	5.63118	6.25103	6.87088	0.0109983	2.92911e-5	0.0708586	0.00110673
chr2	239277680	239277780	1391485	0	-	0.5	(0.485,0.523]	chr2	148740	261	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	119	2	6.06388	6.25093	6.43798	0.00469187	7.70737e-4	0.0447158	0.0118331
chr19	2049911	2050008	7308294	0	-	0.556701	(0.523,0.58]	chr19	753574	29	INTRON	INTRON	MKNK2	ENSG00000099875.16	ENST00000309340.11:ENST00000250896.9:ENST00000586828.5:ENST00000589509.5:ENST00000589534.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	126	2	5.77287	6.25028	6.72769	0.00275419	0.00160162	0.0332418	0.0197827
chr15	99602309	99602409	6198704	0	+	0.49	(0.485,0.523]	chr15	609963	2	SS5_PROX	SS5_PROX:INTRON	MEF2A	ENSG00000068305.18	ENST00000560493.5:ENST00000354410.9:ENST00000558812.5:ENST00000558856.5:ENST00000685785.1:ENST00000559036.5:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000558049.5:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1:ENST00000559903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	120	2	6.00341	6.25021	6.49701	0.00420849	9.07333e-4	0.0421454	0.0132726
chr1	154607891	154607991	594192	0	-	0.59	(0.58,1]	chr1	69508	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ADAR	ENSG00000160710.18	ENST00000681056.1:ENST00000680270.1:ENST00000679375.1:ENST00000679899.1:ENST00000681901.1:ENST00000648714.2:ENST00000681235.1:ENST00000647682.2:ENST00000368474.9:ENST00000680305.1:ENST00000368471.8:ENST00000648231.2:ENST00000649022.2:ENST00000681786.1:ENST00000679465.1:ENST00000679805.1:ENST00000649408.2:ENST00000649042.1:ENST00000649724.1:ENST00000648311.1:ENST00000649749.1:ENST00000649021.1:ENST00000529168.2:ENST00000681683.1:ENST00000648871.1:ENST00000463920.5:ENST00000680472.1:ENST00000471068.2:ENST00000494866.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	113	2	6.01134	6.250165	6.48899	0.00531709	1.02074e-4	0.047841	0.00277572
chr16	8858089	8858174	6546179	0	-	0.576471	(0.523,0.58]	chr16	651453	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CARHSP1	ENSG00000153048.11	ENST00000396593.6:ENST00000611932.4:ENST00000618335.4:ENST00000619881.4:ENST00000610831.4:ENST00000614449.4:ENST00000311052.10:ENST00000561530.5:ENST00000567554.5:ENST00000565287.5:ENST00000567908.5:ENST00000570125.5:ENST00000568117.5:ENST00000568968.1:ENST00000563815.5:ENST00000562843.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	254	2	5.33653	6.250165	7.1638	0.00118398	4.62422e-5	0.020806	0.00155479
chr7	134293162	134293260	3715896	0	-	0.44898	(0.419,0.45]	chr7	356904	40	UTR3	UTR3:EXON_MRNA	SLC35B4	ENSG00000205060.11	ENST00000378509.9	protein_coding	protein_coding	protein_coding	protein_coding	0	120	2	6.23755	6.24995	6.26235	0.0110181	8.27298e-4	0.0708586	0.0124589
chr10	31459736	31459836	4473160	0	+	0.32	(0.29,0.33]	chr10	427907	697	INTRON	INTRON	ZEB1	ENSG00000148516.23	ENST00000488625.6:ENST00000560196.5:ENST00000542879.5:ENST00000561304.5:ENST00000320985.14:ENST00000560721.6:ENST00000559858.5:ENST00000558440.5:ENST00000437844.6:ENST00000424869.6:ENST00000542815.7:ENST00000558863.5:ENST00000561212.5:ENST00000558655.5:ENST00000561061.5:ENST00000559496.5:ENST00000446923.7:ENST00000557827.5:ENST00000606671.5:ENST00000606161.1:ENST00000493835.5:ENST00000560909.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	118	2	6.11651	6.2499199999999995	6.38333	0.00461717	7.13924e-4	0.0442497	0.0112151
chr18	48602837	48602937	7057293	0	+	0.51	(0.485,0.523]	chr18	720287	621	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	6.04835	6.249700000000001	6.45105	0.00941539	2.61322e-4	0.0653252	0.00551565
chr19	48191056	48191156	7279475	0	+	0.49	(0.485,0.523]	chr19	747783	79	INTRON	INTRON	ZSWIM9	ENSG00000185453.13	ENST00000614654.2:ENST00000328759.11	protein_coding	protein_coding	protein_coding	protein_coding	0	118	2	5.93906	6.24954	6.56002	0.0113657	1.90696e-4	0.0723462	0.0043642
chr19	36213847	36213938	7367433	0	-	0.43956	(0.419,0.45]	chr19	763876	6	INTRON	INTRON	ZNF565	ENSG00000196357.12	ENST00000304116.10:ENST00000355114.9:ENST00000392173.6:ENST00000591473.1:ENST00000587803.1:ENST00000586648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	121	2	6.13171	6.249420000000001	6.36713	0.00893106	0.00115219	0.0637469	0.0157112
chr16	89432824	89432924	6661162	0	-	0.54	(0.523,0.58]	chr16	666753	11	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	117	2	6.02137	6.249245	6.47712	0.00992924	2.30436e-4	0.0671959	0.00498593
chr3	114401084	114401184	1875800	0	-	0.53	(0.523,0.58]	chr3	190847	116	INTRON	INTRON	ZBTB20	ENSG00000181722.17	ENST00000675478.1:ENST00000357258.8:ENST00000462705.5:ENST00000393785.6:ENST00000471418.5:ENST00000481632.5:ENST00000464560.5:ENST00000676079.1:ENST00000479879.5:ENST00000470311.5:ENST00000482689.5:ENST00000463890.5:ENST00000486152.6:ENST00000491500.5:ENST00000480832.5:ENST00000492665.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	130	2	5.65959	6.2489550000000005	6.83832	0.00223061	0.0021416	0.0297064	0.0240825
chr2	10190503	10190603	718206	0	+	0.48	(0.45,0.485]	chr2	84002	344	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	121	2	5.99015	6.24877	6.50739	0.00482293	0.00110015	0.0453395	0.015136
chr14	54790434	54790533	5821701	0	+	0.40404	(0.39,0.419]	chr14	569165	16	UTR3	UTR3:EXON_MRNA	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9	protein_coding	protein_coding	protein_coding	protein_coding	1	269	2	5.01082	6.2483450000000005	7.48587	0.0010565	1.97633e-4	0.0195243	0.00448962
chr4	5783251	5783351	2009958	0	+	0.46	(0.45,0.485]	chr4	205033	3	SS3_PROX	SS3_PROX:INTRON	EVC	ENSG00000072840.13	ENST00000264956.11	protein_coding	protein_coding	protein_coding	protein_coding	0	126	2	5.61431	6.248279999999999	6.88225	0.0217589	9.12292e-5	0.100615	0.00255062
chr10	100548834	100548934	4569154	0	+	0.41	(0.39,0.419]	chr10	436105	8	UTR3	UTR3:EXON_MRNA	HIF1AN	ENSG00000166135.14	ENST00000299163.7	protein_coding	protein_coding	protein_coding	protein_coding	0	119	2	6.15206	6.247975	6.34389	0.0111378	5.94847e-4	0.0715198	0.0098913
chr12	132533963	132534062	5352955	0	+	0.646465	(0.58,1]	chr12	523670	56	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	236	2	5.14783	6.24773	7.34763	2.99474e-4	4.60275e-5	0.00982269	0.0015485
chr3	65419536	65419636	1809645	0	-	0.42	(0.419,0.45]	chr3	187193	177	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5	protein_coding	protein_coding	protein_coding	protein_coding	1	335	2	4.9478	6.24768	7.54756	0.00237287	2.38821e-5	0.0307332	9.56571e-4
chr20	37395071	37395169	7473053	0	+	0.591837	(0.58,1]	chr20	778188	4	INTRON	INTRON	SRC	ENSG00000197122.13	ENST00000692112.1:ENST00000692423.1:ENST00000373578.7:ENST00000373567.6:ENST00000373558.2:ENST00000358208.9:ENST00000489153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	114	2	5.89541	6.24755	6.59969	0.0066708	7.15008e-5	0.0540577	0.00213784
chr7	91947132	91947232	3412424	0	+	0.45	(0.419,0.45]	chr7	329504	56	INTRON	INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000394564.5:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	398	2	4.12038	6.24752	8.37466	7.22184e-4	2.44823e-4	0.0113216	0.00884339
chr11	14302030	14302130	4998866	0	-	0.41	(0.39,0.419]	chr11	483716	58	INTRON	INTRON	RRAS2	ENSG00000133818.14	ENST00000256196.9:ENST00000537760.5:ENST00000529237.5:ENST00000534746.5:ENST00000526063.5:ENST00000532814.5:ENST00000531807.5:ENST00000532950.5:ENST00000531421.5:ENST00000526717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	120	2	5.97258	6.247475	6.52237	0.0148746	3.69587e-4	0.0833515	0.00704866
chr9	134370073	134370173	4261124	0	+	0.63	(0.58,1]	chr9	406311	431	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	115	2	6.03271	6.247415	6.46212	0.00211728	4.18183e-4	0.028892	0.00770005
chr14	104778097	104778191	6057670	0	-	0.648936	(0.58,1]	chr14	594698	15	EXON_MRNA	EXON_MRNA:INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000557552.1:ENST00000683722.1:ENST00000555528.5:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000554848.5:ENST00000682269.1:ENST00000555380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	113	2	6.1825	6.247215000000001	6.31193	0.00289626	2.66047e-4	0.03418	0.00556524
chr15	34554256	34554356	6218161	0	-	0.63	(0.58,1]	chr15	612406	3	SS3_PROX	SS3_PROX:INTRON	GOLGA8B	ENSG00000215252.12	ENST00000683415.1:ENST00000569100.5:ENST00000484716.5:ENST00000564575.5:ENST00000566091.5:ENST00000566258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	113	2	6.1825	6.247215000000001	6.31193	0.00289626	2.66047e-4	0.03418	0.00556524
chr1	98677927	98678026	192179	0	+	0.424242	(0.419,0.45]	chr1	20758	7	INTRON	INTRON	SNX7	ENSG00000162627.17	ENST00000529992.5:ENST00000306121.8:ENST00000528824.1:ENST00000454199.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	120	2	6.21151	6.246779999999999	6.28205	0.0102557	9.41863e-4	0.0684871	0.0135546
chr17	55313229	55313329	6757596	0	+	0.4	(0.39,0.419]	chr17	681718	239	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	1171	2	5.82205	6.24669	6.67133	7.32534e-5	2.05098e-6	0.00478768	1.69515e-4
chr18	32768344	32768444	7143397	0	-	0.39	(0.36,0.39]	chr18	726510	259	INTRON	INTRON	KLHL14	ENSG00000197705.10	ENST00000359358.9:ENST00000358095.4	protein_coding	protein_coding	protein_coding	protein_coding	1	271	2	5.43757	6.24662	7.05567	0.00226676	5.68878e-5	0.0300665	0.00180504
chr14	104720972	104721069	5925636	0	+	0.628866	(0.58,1]	chr14	579884	23	UTR3	UTR3:EXON_MRNA	INF2	ENSG00000203485.14	ENST00000330634.11:ENST00000392634.9:ENST00000675207.1:ENST00000675638.1	protein_coding	protein_coding	protein_coding	protein_coding	0	128	2	5.59324	6.2458100000000005	6.89838	0.0014734	8.25028e-4	0.0185589	0.0170688
chr7	76997026	76997126	3398770	0	+	0.6	(0.58,1]	chr7	328286	63	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	128	2	5.59324	6.2458100000000005	6.89838	0.0014734	8.25028e-4	0.0185589	0.0170688
chr6	144416079	144416179	3021172	0	+	0.4	(0.39,0.419]	chr6	295154	125	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000628146.2:ENST00000421035.2	protein_coding	protein_coding	protein_coding	protein_coding	0	119	2	6.07786	6.2456499999999995	6.41344	0.012565	4.94825e-4	0.0761905	0.00865935
chr11	108910780	108910880	4937196	0	+	0.49	(0.485,0.523]	chr11	476007	421	INTRON	INTRON	DDX10	ENSG00000178105.12	ENST00000690021.1:ENST00000686283.1:ENST00000322536.8:ENST00000648124.1:ENST00000688583.1:ENST00000686617.1:ENST00000688976.1:ENST00000687072.1:ENST00000526794.1:ENST00000692839.1:ENST00000689812.1:ENST00000690056.1:ENST00000690248.1:ENST00000530116.1:ENST00000524979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	118	2	5.9104	6.24563	6.58086	0.0119344	1.79455e-4	0.0741726	0.00418827
chr19	37218515	37218602	7252057	0	+	0.494253	(0.485,0.523]	chr19	743295	2	SS5_PROX	SS5_PROX:INTRON	ZNF383	ENSG00000188283.12	ENST00000586068.5:ENST00000585441.5:ENST00000586658.1:ENST00000590503.5:ENST00000684119.1:ENST00000589413.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	118	2	5.9104	6.24563	6.58086	0.0119344	1.79455e-4	0.0741726	0.00418827
chr12	120984062	120984161	5340971	0	+	0.40404	(0.39,0.419]	chr12	521546	46	INTRON	INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000400024.6:ENST00000560968.5:ENST00000402929.5:ENST00000535955.5:ENST00000538626.2:ENST00000538646.5:ENST00000541924.5:ENST00000544574.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	119	2	6.24541	6.24552	6.24563	0.00955236	7.69256e-4	0.0658012	0.0118331
chr13	29520147	29520245	5677208	0	-	0.520408	(0.485,0.523]	chr13	557615	2	INTRON	INTRON	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	1	256	2	5.42708	6.24538	7.06368	0.00142841	3.6329e-5	0.0231443	0.00129815
chr2	240624884	240624983	1075192	0	+	0.676768	(0.58,1]	chr2	116654	55	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	1	289	2	5.23472	6.24538	7.25604	4.15489e-4	7.89156e-6	0.0117067	4.34116e-4
chr6	158019889	158019989	3059691	0	+	0.38	(0.36,0.39]	chr6	297373	17	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	1	323	2	4.76941	6.2452950000000005	7.72118	0.00286129	1.17452e-5	0.0339742	5.77107e-4
chr11	17910204	17910304	5014339	0	-	0.46	(0.45,0.485]	chr11	484610	316	INTRON	INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528369.5:ENST00000528200.5:ENST00000529440.5:ENST00000529151.5:ENST00000532546.5:ENST00000525920.5:ENST00000532265.5:ENST00000533241.1:ENST00000525168.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	122	2	5.92705	6.245205	6.56336	0.00436001	0.00129636	0.0427656	0.0170746
chr2	163704602	163704702	1296008	0	-	0.47	(0.45,0.485]	chr2	139073	924	INTRON	INTRON	FIGN	ENSG00000182263.14	ENST00000409634.5:ENST00000333129.4:ENST00000482917.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	122	2	5.92705	6.245205	6.56336	0.00436001	0.00129636	0.0427656	0.0170746
chr1	204276595	204276695	645578	0	-	0.51	(0.485,0.523]	chr1	76576	2	SS5_PROX	SS5_PROX:INTRON	PLEKHA6	ENSG00000143850.16	ENST00000272203.8:ENST00000637508.1:ENST00000414478.1:ENST00000672625.1:ENST00000564627.2	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	5.99474	6.245185	6.49563	0.0103305	2.29841e-4	0.0684871	0.00498593
chr12	120998673	120998767	5341125	0	+	0.521277	(0.485,0.523]	chr12	521576	5	INTRON	INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000560968.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	117	2	5.99474	6.245185	6.49563	0.0103305	2.29841e-4	0.0684871	0.00498593
chr5	180809939	180810039	2823315	0	-	0.64	(0.58,1]	chr5	277057	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MGAT1	ENSG00000131446.17	ENST00000333055.8:ENST00000393340.7:ENST00000506889.1:ENST00000514438.1:ENST00000513431.5:ENST00000514760.1:ENST00000512080.1:ENST00000510341.1:ENST00000508702.1:ENST00000513149.1:ENST00000508090.1:ENST00000510962.1:ENST00000506033.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	116	2	5.96814	6.2450600000000005	6.52198	0.00186556	5.06433e-4	0.0269723	0.00881473
chr15	20442438	20442538	6202471	0	-	0.39	(0.36,0.39]	chr15	610287	14	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000424611.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	137	2	5.37307	6.244855	7.11664	0.0361409	6.9702e-5	0.127853	0.00209831
chr13	97338727	97338827	5631971	0	+	0.58	(0.523,0.58]	chr13	553188	39	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	341	2	5.01053	6.24469	7.47885	6.30946e-4	2.97899e-5	0.0147478	0.00112026
chr9	2792484	2792583	4269293	0	-	0.262626	[0,0.29]	chr9	407781	93	INTRON	INTRON	PUM3	ENSG00000080608.10	ENST00000490444.2	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	114	2	6.11193	6.24464	6.37735	0.00480124	2.4707e-4	0.0452644	0.00526245
chr17	56892629	56892729	6931124	0	-	0.45	(0.419,0.45]	chr17	706270	4	SS3_PROX	SS3_PROX:INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000574234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	279	2	5.53516	6.24416	6.95316	0.00331448	4.84065e-5	0.0368376	0.00160761
chr7	139665587	139665687	3722801	0	-	0.36	(0.33,0.36]	chr7	357498	335	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	118	2	6.06348	6.244070000000001	6.42466	0.0108257	4.08653e-4	0.0707085	0.00759284
chr13	112552958	112553058	5752449	0	-	0.59	(0.58,1]	chr13	563939	44	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000464139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	112	2	6.14427	6.24407	6.34387	0.00407804	1.61506e-4	0.0413652	0.00387712
chr13	113054387	113054473	5656180	0	+	0.593023	(0.58,1]	chr13	555188	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	112	2	6.16945	6.243825	6.3182	0.00387582	1.74994e-4	0.0401256	0.00410754
chr19	47227576	47227657	7392356	0	-	0.641975	(0.58,1]	chr19	768098	5	INTRON	INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	0	112	2	6.16945	6.243825	6.3182	0.00387582	1.74994e-4	0.0401256	0.00410754
chr15	98787998	98788098	6194726	0	+	0.5	(0.485,0.523]	chr15	609667	31	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1:ENST00000557938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	258	2	4.94059	6.24331	7.54603	5.44941e-4	1.63137e-4	0.0136434	0.00391234
chr2	3297497	3297596	1081082	0	-	0.535354	(0.523,0.58]	chr2	117633	148	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	116	2	6.09961	6.24235	6.38509	0.00866655	3.00426e-4	0.0623824	0.00607383
chrX	119842525	119842607	8096132	0	-	0.560976	(0.523,0.58]	chrX	844034	4	INTRON	INTRON	UPF3B	ENSG00000125351.13	ENST00000276201.7:ENST00000345865.6:ENST00000478840.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	116	2	6.19774	6.242265	6.28679	0.0072907	3.97355e-4	0.0567247	0.00741985
chr4	78786306	78786406	2071524	0	+	0.46	(0.45,0.485]	chr4	211658	92	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	117	2	6.18942	6.242255	6.29509	0.00844217	4.85904e-4	0.0617623	0.00857996
chr4	3368980	3369080	2005126	0	+	0.67	(0.58,1]	chr4	204663	256	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	278	2	4.86045	6.24223	7.62401	9.78301e-4	2.16446e-6	0.0187475	1.7578e-4
chr14	68901046	68901124	5999351	0	-	0.512821	(0.485,0.523]	chr14	588710	1	SS3_PROX	SS3_PROX:INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	123	2	5.84014	6.241845	6.64355	0.00320229	0.00139792	0.0361639	0.0179863
chr20	3191921	3192021	7515113	0	-	0.51	(0.485,0.523]	chr20	784522	1	SS3_PROX	SS3_PROX:INTRON	DDRGK1	ENSG00000198171.13	ENST00000354488.8:ENST00000470203.1:ENST00000380201.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	668	2	6.04981	6.241565	6.43332	1.5283e-4	1.37144e-6	0.00689544	1.28891e-4
chr7	50561943	50562040	3591038	0	-	0.453608	(0.45,0.485]	chr7	346359	10	INTRON	INTRON	DDC	ENSG00000132437.18	ENST00000444124.7:ENST00000420203.1	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	6.21295	6.241415	6.26988	0.00810629	5.20615e-4	0.0602166	0.00899129
chr9	132071950	132072050	4422748	0	-	0.51	(0.485,0.523]	chr9	422092	394	INTRON	INTRON	MED27	ENSG00000160563.14	ENST00000651950.1:ENST00000357028.6:ENST00000292035.10:ENST00000651555.1:ENST00000650776.1:ENST00000444872.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	129	2	5.47425	6.240925	7.0076	0.0243396	5.00839e-5	0.106588	0.00164756
chr20	63734161	63734257	7509382	0	+	0.572917	(0.523,0.58]	chr20	783523	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000632538.1:ENST00000484569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	254	2	5.41856	6.240905	7.06325	0.0014427	3.56833e-5	0.023287	0.0012808
chr18	13446120	13446218	7025037	0	+	0.5	(0.485,0.523]	chr18	717583	19	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000610087.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	118	2	6.06388	6.24082	6.41776	0.00486906	7.70737e-4	0.0456282	0.0118331
chr6	166955627	166955727	3302051	0	-	0.63	(0.58,1]	chr6	319755	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000358165.7:ENST00000683158.1:ENST00000683333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	627	2	5.54978	6.240585	6.93139	0.00165911	6.84754e-6	0.0202545	0.00157697
chr6	601320	601420	3078173	0	-	0.51	(0.485,0.523]	chr6	299385	17	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	1	262	2	5.61143	6.240145	6.86886	0.00208565	2.02325e-5	0.0287557	8.47796e-4
chr7	116903182	116903281	3451602	0	+	0.444444	(0.419,0.45]	chr7	334308	40	INTRON	INTRON	CAPZA2	ENSG00000198898.15	ENST00000414148.6:ENST00000361183.8:ENST00000449080.5:ENST00000426421.5:ENST00000490693.5:ENST00000417431.5:ENST00000464669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	131	2	5.68676	6.240005	6.79325	0.00437084	0.00338051	0.0428189	0.0328791
chr7	55123897	55123997	3372596	0	+	0.4	(0.39,0.419]	chr7	325297	46	INTRON	INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000450046.1	protein_coding	protein_coding	protein_coding	protein_coding	0	120	2	6.08441	6.23996	6.39551	0.00743138	0.00116356	0.057548	0.0157899
chr6	33409645	33409690	2898376	0	+	0.488889	(0.485,0.523]	chr6	283971	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	KIFC1	ENSG00000237649.8	ENST00000428849.7	protein_coding	protein_coding	protein_coding	protein_coding	0	121	2	5.90769	6.239915	6.57214	0.0036605	0.0011708	0.0389784	0.0157899
chr3	105460953	105461053	1526405	0	+	0.42	(0.419,0.45]	chr3	162334	197	INTRON	INTRON	ALCAM	ENSG00000170017.12	ENST00000306107.9:ENST00000470756.5:ENST00000472644.6:ENST00000481337.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	119	2	6.16812	6.239795	6.31147	0.0123115	7.29222e-4	0.0756356	0.0113963
chr10	73706666	73706765	4716772	0	-	0.535354	(0.523,0.58]	chr10	449734	12	INTRON	INTRON	BMS1P4:ENSG00000272140	ENSG00000271816.1:ENSG00000272140.2	ENST00000580790.1:ENST00000415917.2:ENST00000580623.1	lncRNA	lncRNA	lncRNA	lncRNA	0	116	2	6.235	6.2397100000000005	6.24442	0.00670944	4.59688e-4	0.0541591	0.00821903
chr1	11082333	11082433	399752	0	-	0.41	(0.39,0.419]	chr1	45644	4	SS5_PROX	SS5_PROX:INTRON	EXOSC10	ENSG00000171824.14	ENST00000304457.11:ENST00000376936.9:ENST00000485606.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	119	2	6.16727	6.239465	6.31166	0.00855563	9.41833e-4	0.0621561	0.0135546
chr3	51663816	51663915	1472178	0	+	0.575758	(0.523,0.58]	chr3	157989	5	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	1	252	2	5.13287	6.239459999999999	7.34605	8.24125e-4	8.7318e-5	0.0170688	0.00247172
chr11	70763168	70763268	5061913	0	-	0.48	(0.45,0.485]	chr11	492701	453	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	120	2	5.99015	6.2391950000000005	6.48824	0.00499158	0.00110015	0.0463896	0.015136
chr11	65085664	65085758	4869634	0	+	0.478723	(0.45,0.485]	chr11	467665	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ZFPL1	ENSG00000162300.13	ENST00000650243.1:ENST00000294258.8:ENST00000531761.5:ENST00000453524.6:ENST00000526289.5:ENST00000526334.5:ENST00000526440.1:ENST00000533216.1:ENST00000526945.5:ENST00000532200.1:ENST00000530488.1:ENST00000530744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	117	2	6.03961	6.23867	6.43773	0.0108974	3.27319e-4	0.0707085	0.00645438
chr16	85387537	85387637	6516946	0	+	0.55	(0.523,0.58]	chr16	646391	282	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	132	2	5.5788	6.23836	6.89792	0.00262418	0.00198913	0.0279961	0.0278348
chr9	135838760	135838860	4431134	0	-	0.48	(0.45,0.485]	chr9	423507	108	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	1	261	2	5.46124	6.238265	7.01529	0.00188703	3.87032e-5	0.0271069	0.00135871
chrX	14730904	14731004	7980603	0	-	0.44	(0.419,0.45]	chrX	834971	195	INTRON	INTRON	FANCB	ENSG00000181544.16	ENST00000696351.1:ENST00000696352.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	126	2	5.82848	6.23814	6.6478	0.00559992	0.00242141	0.0493906	0.0261589
chr11	585465	585564	4784871	0	+	0.50505	(0.485,0.523]	chr11	457988	30	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	116	2	6.2314	6.238125	6.24485	0.00665813	4.86354e-4	0.0540577	0.00857996
chr15	25016496	25016594	6064018	0	+	0.306122	(0.29,0.33]	chr15	595414	14	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	5	1447	2	5.97076	6.23809	6.50542	5.75733e-5	1.07269e-7	0.00421737	2.44609e-5
chr14	34981130	34981229	5958193	0	-	0.454545	(0.45,0.485]	chr14	584010	86	INTRON	INTRON	SRP54-AS1	ENSG00000258704.7	ENST00000692503.1:ENST00000690110.1:ENST00000690001.1:ENST00000688072.1:ENST00000693002.1:ENST00000556355.5:ENST00000555015.5:ENST00000693259.1:ENST00000636540.1:ENST00000556705.6:ENST00000691849.1:ENST00000686430.1:ENST00000686298.1:ENST00000688866.1:ENST00000689842.1:ENST00000554945.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	1	273	2	4.69118	6.23803	7.78488	4.20312e-4	3.85858e-4	0.011772	0.00727473
chr22	24611745	24611842	7698360	0	+	0.515464	(0.485,0.523]	chr22	805809	1	INTRON	INTRON	GGT1	ENSG00000100031.19	ENST00000411974.5:ENST00000412658.5:ENST00000445029.5:ENST00000400382.6:ENST00000419133.5:ENST00000452551.5:ENST00000412898.5:ENST00000400380.5:ENST00000455483.5:ENST00000430289.5:ENST00000447416.5:ENST00000432867.5:ENST00000451366.5:ENST00000428855.5:ENST00000425895.5:ENST00000474191.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	120	2	5.94031	6.237690000000001	6.53507	0.00392199	0.00107389	0.0404814	0.0148869
chr5	38815710	38815810	2643145	0	-	0.48	(0.45,0.485]	chr5	262449	30	INTRON	INTRON	OSMR-DT	ENSG00000249740.4	ENST00000662290.1:ENST00000636516.2:ENST00000685305.1:ENST00000513480.1:ENST00000688648.1	lncRNA	lncRNA	lncRNA	lncRNA	2	359	2	4.35535	6.23746	8.11957	2.72221e-4	2.13901e-4	0.00827999	0.00565963
chr16	75234788	75234888	6644455	0	-	0.68	(0.58,1]	chr16	664408	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000566982.1:ENST00000563038.5:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	113	2	6.0945	6.2363599999999995	6.37822	0.00252415	3.47472e-4	0.031696	0.00673552
chr2	239283176	239283275	1391540	0	-	0.616162	(0.58,1]	chr2	148740	316	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	233	2	5.2395	6.236195	7.23289	3.89345e-4	3.37223e-5	0.0113333	0.0012296
chr7	102467138	102467238	3439607	0	+	0.53	(0.523,0.58]	chr7	332820	4	SS3_PROX	SS3_PROX:INTRON	LRWD1	ENSG00000161036.13	ENST00000463739.5:ENST00000292616.10:ENST00000464107.5:ENST00000473880.5:ENST00000485808.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	119	2	5.9758	6.23619	6.49658	0.00424382	9.36996e-4	0.0422099	0.0135546
chr9	100192232	100192332	4198883	0	+	0.4	(0.39,0.419]	chr9	398926	599	INTRON	INTRON	INVS	ENSG00000119509.13	ENST00000262457.7:ENST00000496467.5:ENST00000262456.6:ENST00000466647.5:ENST00000460636.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	121	2	5.82918	6.236135	6.64309	0.0186329	2.66223e-4	0.0932878	0.00556524
chr9	125172699	125172799	4408397	0	-	0.39	(0.36,0.39]	chr9	420219	3	INTRON	INTRON	PPP6C	ENSG00000119414.12	ENST00000373547.9:ENST00000415905.5:ENST00000451402.5:ENST00000456642.1	protein_coding	protein_coding	protein_coding	protein_coding	0	118	2	6.20085	6.2361249999999995	6.2714	0.0100561	7.13729e-4	0.0677306	0.0112151
chr14	95407663	95407763	6048853	0	-	0.32	(0.29,0.33]	chr14	593438	5	UTR3	UTR3:EXON_MRNA	SYNE3	ENSG00000176438.13	ENST00000682763.1:ENST00000557275.5	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	5.91726	6.235935	6.55461	0.010702	2.0962e-4	0.0701493	0.00467341
chrX	44924684	44924784	7872188	0	+	0.42	(0.419,0.45]	chrX	825082	503	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	119	2	6.21151	6.235745	6.25998	0.0106277	9.41863e-4	0.0698136	0.0135546
chr17	72571193	72571293	6964023	0	-	0.55	(0.523,0.58]	chr17	710389	368	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	116	2	5.99431	6.235715	6.47712	0.0104033	2.30436e-4	0.0686837	0.00498593
chr9	6856480	6856580	4115939	0	+	0.41	(0.39,0.419]	chr9	391873	64	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000438023.5:ENST00000381306.7:ENST00000381309.8:ENST00000489243.5:ENST00000543771.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	121	2	5.9965	6.235625000000001	6.47475	0.00649594	0.00145172	0.0532359	0.0184691
chr20	33676344	33676441	7546194	0	-	0.57732000000000006	(0.523,0.58]	chr20	787683	10	UTR3	UTR3:EXON_MRNA	E2F1	ENSG00000101412.13	ENST00000343380.6	protein_coding	protein_coding	protein_coding	protein_coding	0	123	2	5.62258	6.2355149999999995	6.84845	0.0193313	7.65992e-5	0.0954446	0.00224403
chr4	3368182	3368282	2005118	0	+	0.6	(0.58,1]	chr4	204663	248	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	233	2	5.36112	6.234674999999999	7.10823	5.16402e-4	2.22261e-5	0.0132022	9.06675e-4
chr11	70686105	70686205	5061140	0	-	0.53	(0.523,0.58]	chr11	492688	161	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	123	2	5.80873	6.234585	6.66044	0.00312705	0.00145893	0.0356998	0.0184991
chr17	58090173	58090273	6764166	0	+	0.4	(0.39,0.419]	chr17	682242	10	UTR3	UTR3:EXON_MRNA	DYNLL2	ENSG00000264364.3	ENST00000579991.3	protein_coding	protein_coding	protein_coding	protein_coding	4	497	2	4.02086	6.23437	8.44788	3.13276e-4	1.66226e-4	0.00722822	0.00626799
chr11	70585729	70585829	5060130	0	-	0.47	(0.45,0.485]	chr11	492663	824	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	358	2	4.35535	6.234345	8.1133400000000009	2.72221e-4	2.16632e-4	0.00832785	0.00565963
chr6	158040333	158040432	3059901	0	+	0.484848	(0.45,0.485]	chr6	297390	63	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	1445	2	4.97327	6.234295	7.49532	2.80461e-4	5.1728e-8	0.00950666	1.54848e-5
chr1	65154281	65154380	158513	0	+	0.444444	(0.419,0.45]	chr1	18050	48	INTRON	INTRON	AK4	ENSG00000162433.15	ENST00000545314.5:ENST00000497030.5:ENST00000470888.6:ENST00000546702.5:ENST00000395334.6:ENST00000327299.8:ENST00000474968.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	123	2	5.92632	6.2341549999999994	6.54199	0.00668959	0.00191339	0.0541558	0.0223437
chr16	89305644	89305744	6659868	0	-	0.7	(0.58,1]	chr16	666664	3	SS3_PROX	SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1:ENST00000647539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	233	2	5.37273	6.2339400000000005	7.09515	5.31842e-4	2.13533e-5	0.0134466	8.80696e-4
chr10	112742977	112743077	4589432	0	+	0.42	(0.419,0.45]	chr10	438727	53	INTRON	INTRON	VTI1A	ENSG00000151532.14	ENST00000393077.3	protein_coding	protein_coding	protein_coding	protein_coding	0	119	2	6.01834	6.23393	6.44952	0.015582500000000001	5.09118e-4	0.0849828	0.00884498
chr1	23111743	23111843	422849	0	-	0.57	(0.523,0.58]	chr1	49676	17	INTRON	INTRON	LUZP1	ENSG00000169641.14	ENST00000302291.8:ENST00000314174.5:ENST00000471849.5:ENST00000475164.2	protein_coding	protein_coding	protein_coding	protein_coding	0	121	2	5.8779	6.2339	6.5899	0.00356891	0.00121652	0.0383188	0.0162693
chr14	63608657	63608757	5993106	0	-	0.46	(0.45,0.485]	chr14	587828	83	INTRON	INTRON	WDR89	ENSG00000140006.12	ENST00000620954.2:ENST00000394942.2:ENST00000267522.7:ENST00000554717.1	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	6.1644	6.23389	6.30338	0.00692617	6.92954e-4	0.0553898	0.0109657
chr19	35004323	35004423	7244903	0	+	0.55	(0.523,0.58]	chr19	742073	11	INTRON	INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	128	2	5.65959	6.233575	6.80756	0.00236582	0.0021416	0.0306624	0.0240825
chr19	47672555	47672655	7278342	0	+	0.47	(0.45,0.485]	chr19	747629	646	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	0	120	2	5.95894	6.233165	6.50739	0.00482293	0.00119342	0.0453395	0.016037
chr7	101820977	101821077	3434018	0	+	0.5	(0.485,0.523]	chr7	332510	16	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	121	2	5.692	6.233105	6.77421	0.0171772	1.01398e-4	0.0895975	0.00276585
chr15	76338514	76338614	6156240	0	+	0.62	(0.58,1]	chr15	605682	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ISL2	ENSG00000159556.10	ENST00000290759.9:ENST00000558656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	117	2	5.66698	6.232715	6.79845	0.0102927	3.72743e-5	0.0684871	0.00131851
chr10	28559234	28559334	4469677	0	+	0.43	(0.419,0.45]	chr10	427649	208	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	268	2	5.21478	6.232655	7.25053	0.00196039	1.22138e-4	0.0277361	0.00319013
chr5	142806433	142806533	2556418	0	+	0.36	(0.33,0.36]	chr5	253988	332	INTRON	INTRON	ARHGAP26	ENSG00000145819.18	ENST00000274498.9:ENST00000645722.2:ENST00000642734.1:ENST00000378013.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	119	2	6.03758	6.232285	6.42699	0.00578704	0.00113952	0.0501412	0.0155794
chr2	70936529	70936629	827609	0	+	0.57	(0.523,0.58]	chr2	93298	32	INTRON	INTRON	VAX2	ENSG00000116035.4	ENST00000432367.6:ENST00000646783.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	117	2	6.06747	6.23214	6.39681	0.00509616	7.30845e-4	0.0467496	0.0113963
chr7	143882199	143882235	3729982	0	-	0.5	(0.485,0.523]	chr7	358298	1	SS3_PROX	SS3_PROX:INTRON	TCAF1	ENSG00000198420.10	ENST00000479870.6:ENST00000355951.2:ENST00000392900.3:ENST00000460532.5:ENST00000491908.1:ENST00000478172.1:ENST00000485416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	124	2	5.76929	6.232085	6.69488	0.00290687	0.00167976	0.0342042	0.0203806
chr16	85399232	85399332	6517063	0	+	0.7	(0.58,1]	chr16	646391	399	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	5.86553	6.23183	6.59813	0.00158605	6.8352e-4	0.0245893	0.0108717
chr16	81614217	81614317	6509438	0	+	0.59	(0.58,1]	chr16	645921	33	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	113	2	6.06394	6.231795	6.39965	0.00241374	3.80904e-4	0.0309229	0.00721291
chr16	72073691	72073791	6491302	0	+	0.48	(0.45,0.485]	chr16	645095	4	SS3_PROX	SS3_PROX:INTRON	HPR	ENSG00000261701.9	ENST00000649683.1:ENST00000540303.7:ENST00000566168.1:ENST00000561690.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	123	2	5.64922	6.23168	6.81414	0.020599	1.11424e-4	0.0982852	0.00297888
chr17	44048037	44048137	6910397	0	-	0.36	(0.33,0.36]	chr17	703395	74	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	0	120	2	5.97713	6.231574999999999	6.48602	0.00521233	0.00133012	0.0475559	0.0173248
chr1	31011200	31011300	435414	0	-	0.32	(0.29,0.33]	chr1	51564	37	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	118	2	5.99803	6.23143	6.46483	0.0039633	9.81074e-4	0.040677	0.0140347
chr2	239343385	239343485	1392144	0	-	0.45	(0.419,0.45]	chr2	148752	189	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	119	2	6.1588	6.2313	6.3038	0.00990101	0.00107628	0.0671959	0.0148869
chr18	12430470	12430559	7020147	0	+	0.483146	(0.45,0.485]	chr18	717085	7	INTRON	INTRON	PRELID3A	ENSG00000141391.14	ENST00000336990.8:ENST00000590956.5:ENST00000440960.6:ENST00000589565.1:ENST00000592149.5:ENST00000587735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	117	2	6.13678	6.230955	6.32513	0.00666704	7.46272e-4	0.0540577	0.0115813
chr7	584207	584307	3523928	0	-	0.63	(0.58,1]	chr7	340377	3	SS5_PROX	SS5_PROX:INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000400758.6:ENST00000430040.5	protein_coding	protein_coding	protein_coding	protein_coding	0	111	2	6.09256	6.23083	6.3691	0.00452436	1.49225e-4	0.0436138	0.00367368
chr6	17615613	17615709	3104476	0	-	0.364583	(0.36,0.39]	chr6	300926	7	UTR3	UTR3:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	1	265	2	5.01277	6.230625	7.44848	0.00109602	1.95289e-4	0.0199526	0.0044508
chr2	65431161	65431261	1172167	0	-	0.75	(0.58,1]	chr2	127582	506	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	1	247	2	4.76267	6.230525	7.69838	1.64538e-4	1.3248e-4	0.00637826	0.0039392
chr8	143952148	143952246	4098642	0	-	0.673469	(0.58,1]	chr8	389857	14	INTRON	INTRON	PLEC	ENSG00000178209.17	ENST00000436759.6:ENST00000527303.2:ENST00000356346.7:ENST00000354958.6:ENST00000528025.6:ENST00000527096.5:ENST00000685198.1:ENST00000532346.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	120	2	5.75506	6.2301850000000005	6.70531	0.00125905	9.38062e-4	0.0215793	0.0135546
chr10	131958047	131958146	4616608	0	+	0.606061	(0.58,1]	chr10	441116	22	UTR3	UTR3:EXON_MRNA	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	111	2	6.1942	6.22982	6.26544	0.00368616	2.06156e-4	0.0389784	0.00461335
chr1	6836584	6836684	8963	0	+	0.57	(0.523,0.58]	chr1	1849	110	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12:ENST00000490738.5:ENST00000476163.5:ENST00000473578.5:ENST00000557126.5:ENST00000467404.6:ENST00000461311.1:ENST00000486138.1:ENST00000482934.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	119	2	5.94389	6.229815	6.51574	0.00409625	0.0010207	0.0413652	0.0143498
chr1	3892451	3892547	386346	0	-	0.635417	(0.58,1]	chr1	44329	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	C1orf174	ENSG00000198912.12	ENST00000474140.1:ENST00000486765.5:ENST00000361605.4:ENST00000679703.1:ENST00000680054.1:ENST00000680279.1:ENST00000681823.1:ENST00000679946.1:ENST00000680169.1:ENST00000680535.1:ENST00000679929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	112	2	5.92528	6.2297899999999995	6.5343	0.0062948	8.82891e-5	0.0523832	0.00248664
chrX	1423931	1424030	7965722	0	-	0.474747	(0.45,0.485]	chrX	834272	17	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	116	2	6.18942	6.2296499999999995	6.26988	0.00844217	5.20615e-4	0.0617623	0.00899129
chr5	95753142	95753239	2484885	0	+	0.360825	(0.36,0.39]	chr5	247560	4	INTRON	INTRON	RHOBTB3	ENSG00000164292.13	ENST00000504949.1:ENST00000379982.8:ENST00000502541.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	118	2	6.16784	6.22956	6.29128	0.0086512	9.334e-4	0.0623824	0.0135546
chr2	235504540	235504640	1062641	0	+	0.53	(0.523,0.58]	chr2	115651	93	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	264	2	4.72884	6.2289650000000005	7.72909	3.78993e-4	2.96905e-4	0.011147	0.00603096
chr16	89221506	89221591	6523476	0	+	0.505882	(0.485,0.523]	chr16	647073	4	SS5_PROX	SS5_PROX:INTRON	ZNF778	ENSG00000170100.14	ENST00000433976.7:ENST00000620195.4:ENST00000564906.5:ENST00000567651.5:ENST00000306502.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	119	2	5.75784	6.228895	6.69995	0.0154142	1.26446e-4	0.0849828	0.00325863
chr18	80134306	80134395	7101349	0	+	0.438202	(0.419,0.45]	chr18	723187	1	INTRON	INTRON	ADNP2	ENSG00000101544.9	ENST00000262198.9:ENST00000560752.5:ENST00000559951.5:ENST00000560561.1:ENST00000561195.1	protein_coding	protein_coding	protein_coding	protein_coding	0	131	2	5.64904	6.22879	6.80854	0.00425752	0.00368884	0.0422596	0.0348088
chr17	76070844	76070944	6974634	0	-	0.36	(0.33,0.36]	chr17	711874	4	SS3_PROX	SS3_PROX:INTRON	SRP68	ENSG00000167881.15	ENST00000307877.7:ENST00000539137.5:ENST00000592704.5:ENST00000591272.1:ENST00000629930.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	117	2	6.17846	6.228770000000001	6.27908	0.00749528	7.89942e-4	0.0576451	0.0120519
chr9	41359352	41359452	4155392	0	+	0.59	(0.58,1]	chr9	395188	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000288891	ENSG00000288891.1	ENST00000692789.1:ENST00000686353.1	lncRNA	lncRNA	lncRNA	lncRNA	0	111	2	6.21852	6.22842	6.23832	0.00350812	2.24165e-4	0.0379357	0.00490779
chr2	210080087	210080176	1365521	0	-	0.52809	(0.523,0.58]	chr2	145380	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KANSL1L	ENSG00000144445.17	ENST00000281772.14:ENST00000418791.5:ENST00000452086.5:ENST00000457374.5:ENST00000428655.5:ENST00000460256.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	115	2	6.22127	6.228135	6.235	0.00699217	4.59688e-4	0.0555241	0.00821903
chr9	137569829	137569929	4435762	0	-	0.57	(0.523,0.58]	chr9	424466	43	INTRON	INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000475100.5:ENST00000472113.5:ENST00000485189.5:ENST00000467768.5:ENST00000477690.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	115	2	6.22127	6.228135	6.235	0.00699217	4.59688e-4	0.0555241	0.00821903
chr22	48702140	48702240	7751289	0	+	0.48	(0.45,0.485]	chr22	812283	84	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	147	2	5.28846	6.22799	7.16752	0.00612862	0.0014116	0.0489549	0.0229261
chr19	17145691	17145791	7218903	0	+	0.52	(0.485,0.523]	chr19	737730	2	SS5_PROX	SS5_PROX:INTRON	MYO9B	ENSG00000099331.14	ENST00000682292.1:ENST00000595618.5:ENST00000594824.5:ENST00000397274.6:ENST00000595641.5	protein_coding	protein_coding	protein_coding	protein_coding	0	115	2	6.07443	6.22796	6.38149	0.00899749	3.18797e-4	0.0637469	0.00634142
chr9	129500039	129500136	4250777	0	+	0.484536	(0.45,0.485]	chr9	404726	12	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	117	2	5.93034	6.22794	6.52554	0.0130794	2.5568e-4	0.0782396	0.00541562
chr2	3503187	3503287	1081957	0	-	0.45	(0.419,0.45]	chr2	117683	18	INTRON	INTRON	ADI1	ENSG00000182551.14	ENST00000327435.11:ENST00000382093.5	protein_coding	protein_coding	protein_coding	protein_coding	0	128	2	5.55739	6.227905	6.89842	0.0310506	1.51593e-4	0.119758	0.00370696
chr15	62450495	62450595	6123328	0	+	0.42	(0.419,0.45]	chr15	602349	595	INTRON	INTRON	TLN2	ENSG00000171914.17	ENST00000561322.1:ENST00000636159.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	118	2	6.16812	6.22762	6.28712	0.0123115	7.76382e-4	0.0756356	0.0118807
chrX	119637595	119637695	8095125	0	-	0.47	(0.45,0.485]	chrX	843925	4	SS3_PROX	SS3_PROX:INTRON	SEPTIN6	ENSG00000125354.24	ENST00000360156.11:ENST00000354228.8:ENST00000460411.5:ENST00000489216.5:ENST00000354416.7:ENST00000394610.7:ENST00000343984.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	117	2	6.10862	6.2275849999999995	6.34655	0.00642055	8.0459e-4	0.0529785	0.012189
chr2	58081788	58081888	805764	0	+	0.42	(0.419,0.45]	chr2	91474	229	INTRON	INTRON	VRK2	ENSG00000028116.18	ENST00000648897.1:ENST00000417641.6:ENST00000435505.6:ENST00000412104.6:ENST00000432057.2:ENST00000440705.6:ENST00000340157.9:ENST00000428021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	121	2	5.98805	6.2274650000000005	6.46688	0.00757951	0.00164584	0.0579104	0.0202325
chr15	64842328	64842428	6133213	0	+	0.57	(0.523,0.58]	chr15	603322	3	SS5_PROX	SS5_PROX:INTRON	PLEKHO2	ENSG00000241839.10	ENST00000616065.4:ENST00000323544.5	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	6.03756	6.2274449999999995	6.41733	0.00490887	7.92905e-4	0.0457614	0.0120621
chr16	85386837	85386937	6516939	0	+	0.66	(0.58,1]	chr16	646391	275	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	143	2	5.25731	6.22696	7.19661	0.00358178	4.22825e-4	0.0342681	0.011772
chr12	132792775	132792874	5540389	0	-	0.69697	(0.58,1]	chr12	546816	11	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	113	2	6.03271	6.226744999999999	6.42078	0.00230938	4.18183e-4	0.0302623	0.00770005
chr2	10190703	10190803	718208	0	+	0.52	(0.485,0.523]	chr2	84002	346	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	117	2	6.03396	6.225860000000001	6.41776	0.00486906	8.35707e-4	0.0456282	0.012554
chr1	5869286	5869385	386506	0	-	0.484848	(0.45,0.485]	chr1	44370	10	INTRON	INTRON	NPHP4	ENSG00000131697.18	ENST00000378156.9:ENST00000478423.6:ENST00000489180.6:ENST00000378169.7:ENST00000468253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	256	2	5.34478	6.225405	7.10603	0.00158793	5.53736e-5	0.0245893	0.00176735
chr9	37919231	37919329	4302275	0	-	0.459184	(0.45,0.485]	chr9	411587	35	UTR3	UTR3:EXON_MRNA	SHB	ENSG00000107338.10	ENST00000377707.4	protein_coding	protein_coding	protein_coding	protein_coding	0	116	2	6.01306	6.225395000000001	6.43773	0.0113949	3.27319e-4	0.0723462	0.00645438
chr1	214460443	214460542	659019	0	-	0.474747	(0.45,0.485]	chr1	77693	81	INTRON	INTRON	PTPN14	ENSG00000152104.12	ENST00000366956.10:ENST00000543945.5	protein_coding	protein_coding	protein_coding	protein_coding	0	116	2	6.1915	6.225185	6.25887	0.00748565	6.44145e-4	0.0576451	0.0104271
chr6	87575279	87575378	3197997	0	-	0.474747	(0.45,0.485]	chr6	310332	53	INTRON	INTRON	RARS2	ENSG00000146282.19	ENST00000691533.1:ENST00000493269.2:ENST00000685069.1:ENST00000691725.1:ENST00000369536.10:ENST00000693431.1:ENST00000685408.1:ENST00000693327.1:ENST00000691205.1:ENST00000689174.1:ENST00000692684.1:ENST00000686988.1:ENST00000690622.1:ENST00000689206.1:ENST00000688532.1:ENST00000686154.1:ENST00000686407.1:ENST00000685701.1:ENST00000689561.1:ENST00000691238.1:ENST00000685336.1:ENST00000686284.1:ENST00000687586.1:ENST00000685376.1:ENST00000685881.1:ENST00000691815.1:ENST00000687090.1:ENST00000451155.2:ENST00000687437.1:ENST00000692394.1:ENST00000687729.1:ENST00000693605.1:ENST00000687909.1:ENST00000688391.1:ENST00000690884.1:ENST00000692843.1:ENST00000684790.1:ENST00000692270.1:ENST00000685219.1:ENST00000689952.1:ENST00000687579.1:ENST00000686857.1:ENST00000690205.1:ENST00000690705.1:ENST00000686142.1:ENST00000688106.1:ENST00000686196.1:ENST00000687078.1:ENST00000690555.1:ENST00000693524.1:ENST00000691259.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	313	2	4.48511	6.225149999999999	7.96519	0.00413452	3.236e-6	0.0415963	2.31758e-4
chr7	122774250	122774350	3700476	0	-	0.38	(0.36,0.39]	chr7	355510	368	INTRON	INTRON	CADPS2	ENSG00000081803.17	ENST00000449022.7:ENST00000313070.11:ENST00000412584.6	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	6.15342	6.224795	6.29617	0.0108737	6.68957e-4	0.0707085	0.0107572
chr20	3799420	3799512	7421525	0	+	0.5	(0.485,0.523]	chr20	773102	6	INTRON	INTRON	CDC25B	ENSG00000101224.18	ENST00000344256.10:ENST00000379598.9:ENST00000467519.5:ENST00000439880.6:ENST00000245960.10:ENST00000340833.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	122	2	5.80515	6.22435	6.64355	0.00320229	0.00153111	0.0361639	0.0191213
chr1	112705342	112705429	563022	0	-	0.609195	(0.58,1]	chr1	64619	3	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RHOC	ENSG00000155366.17	ENST00000369633.6:ENST00000369642.7:ENST00000339083.12:ENST00000285735.6:ENST00000468093.5:ENST00000369638.6:ENST00000369637.5:ENST00000369636.6:ENST00000484280.6:ENST00000369632.6:ENST00000425265.6:ENST00000436685.6:ENST00000528831.5:ENST00000484054.3:ENST00000478447.1:ENST00000527563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	127	2	5.54978	6.224080000000001	6.89838	0.00165911	8.25028e-4	0.0202545	0.0170688
chr7	2048111	2048211	3530713	0	-	0.57	(0.523,0.58]	chr7	340995	331	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	119	2	5.72487	6.22368	6.72249	0.0163679	1.11891e-4	0.0875379	0.00298349
chr5	80426095	80426195	2465375	0	+	0.33	(0.29,0.33]	chr5	246260	140	INTRON	INTRON	ZFYVE16	ENSG00000039319.17	ENST00000338008.9:ENST00000510158.5:ENST00000512558.5:ENST00000505560.5:ENST00000509562.2:ENST00000510995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	115	2	6.1723	6.223405	6.27451	0.00564709	6.13404e-4	0.0495171	0.0100959
chr12	24936639	24936739	5395946	0	-	0.43	(0.419,0.45]	chr12	528329	337	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000342945.9:ENST00000539780.5:ENST00000546285.1	protein_coding	protein_coding	protein_coding	protein_coding	0	120	2	5.8512	6.2233350000000005	6.59547	0.0201381	3.45753e-4	0.0973365	0.00672667
chr2	54562585	54562685	799340	0	+	0.58	(0.523,0.58]	chr2	90800	33	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7:ENST00000333896.5	protein_coding	protein_coding	protein_coding	protein_coding	1	251	2	5.00594	6.222605	7.43927	6.83398e-4	1.28987e-4	0.0153809	0.00330377
chr2	7039528	7039628	712667	0	+	0.49	(0.485,0.523]	chr2	83318	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RNF144A	ENSG00000151692.15	ENST00000320892.11:ENST00000467276.5:ENST00000432850.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	136	2	5.26375	6.22258	7.18141	0.0335928	2.93111e-5	0.124319	0.00110673
chr10	34375102	34375202	4667395	0	-	0.39	(0.36,0.39]	chr10	445475	1	SS3_PROX	SS3_PROX:INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6:ENST00000544292.5	protein_coding	protein_coding	protein_coding	protein_coding	0	119	2	6.02697	6.222035	6.4171	0.00699528	0.00133548	0.0555241	0.0173572
chr9	123818498	123818598	4400777	0	-	0.34	(0.33,0.36]	chr9	419726	201	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	0	116	2	6.18721	6.2220200000000006	6.25683	0.00877878	6.42061e-4	0.0630845	0.0104165
chr9	134338536	134338636	4260808	0	+	0.67	(0.58,1]	chr9	406311	115	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	113	2	6.00079	6.22119	6.44159	0.00221069	4.59827e-4	0.0295736	0.00821903
chr16	89303321	89303420	6659842	0	-	0.606061	(0.58,1]	chr16	666658	13	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	369	2	4.70949	6.22103	7.73257	1.22236e-4	1.84306e-5	0.00614266	7.95515e-4
chr14	102148665	102148765	5916277	0	+	0.52	(0.485,0.523]	chr14	578696	81	INTRON	INTRON	WDR20	ENSG00000140153.18	ENST00000557485.5:ENST00000335263.9:ENST00000424963.6:ENST00000322340.9:ENST00000556807.1:ENST00000555879.5:ENST00000561154.1:ENST00000342702.8:ENST00000558567.5:ENST00000299135.6:ENST00000454394.2:ENST00000556094.1:ENST00000556511.2:ENST00000557186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	306	2	4.9982	6.22049	7.44278	0.00135315	1.29007e-5	0.0224546	6.14919e-4
chr2	10345947	10346046	718858	0	+	0.50505	(0.485,0.523]	chr2	84026	154	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	271	2	4.60039	6.220219999999999	7.84005	4.46264e-4	2.98185e-4	0.00982269	0.00807719
chr1	204091657	204091757	322236	0	+	0.47	(0.45,0.485]	chr1	36272	131	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1:ENST00000528591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	120	2	5.89443	6.21969	6.54495	0.00450754	0.00141013	0.0436138	0.0180659
chr9	4805993	4806093	4109247	0	+	0.4	(0.39,0.419]	chr9	391313	124	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000381732.3:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	117	2	6.19386	6.219635	6.24541	0.00955236	8.79539e-4	0.0658012	0.0129939
chr6	128501341	128501441	3256984	0	-	0.4	(0.39,0.419]	chr6	315230	91	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000524534.5:ENST00000525459.1:ENST00000392449.4:ENST00000532751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	990	2	5.69554	6.219105000000001	6.74267	2.08662e-4	1.0549e-6	0.00813372	1.08085e-4
chr13	97339923	97340023	5631983	0	+	0.53	(0.523,0.58]	chr13	553188	51	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	115	2	6.1255	6.218605	6.31171	0.00594629	6.23263e-4	0.0506158	0.0101764
chr2	239159150	239159249	1390288	0	-	0.535354	(0.523,0.58]	chr2	148698	20	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	115	2	6.1255	6.218605	6.31171	0.00594629	6.23263e-4	0.0506158	0.0101764
chr11	72773547	72773647	5070677	0	-	0.62	(0.58,1]	chr11	493498	138	INTRON	INTRON	ARAP1:STARD10	ENSG00000186635.15:ENSG00000214530.10	ENST00000359373.9:ENST00000334805.11:ENST00000543304.5:ENST00000538536.5:ENST00000538437.5:ENST00000545082.5:ENST00000537947.5:ENST00000542989.5:ENST00000546314.5:ENST00000535267.1:ENST00000539138.1:ENST00000535054.1:ENST00000536290.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	111	2	5.92528	6.2185500000000005	6.51182	0.0062948	9.48877e-5	0.0523832	0.00262417
chr17	50462083	50462183	6752060	0	+	0.62	(0.58,1]	chr17	680707	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACSF2	ENSG00000167107.13	ENST00000510410.5:ENST00000300441.9:ENST00000504392.5:ENST00000506582.5:ENST00000427954.6:ENST00000502667.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	111	2	5.92528	6.2185500000000005	6.51182	0.0062948	9.48877e-5	0.0523832	0.00262417
chr17	38704547	38704647	6729103	0	+	0.59	(0.58,1]	chr17	676275	22	EXON_LNCRNA	EXON_LNCRNA	ENSG00000277969	ENSG00000277969.1	ENST00000612330.1	lncRNA	lncRNA	lncRNA	lncRNA	1	231	2	5.13424	6.2185299999999994	7.30282	3.31884e-4	4.81873e-5	0.0103819	0.00160255
chr12	26746162	26746262	5400731	0	-	0.44	(0.419,0.45]	chr12	528735	200	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000545235.1:ENST00000242737.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	368	2	4.34493	6.21837	8.09181	4.1794e-4	3.89528e-4	0.0117646	0.00732912
chr12	125120648	125120747	5349508	0	+	0.565657	(0.523,0.58]	chr12	523174	9	EXON_MRNA	EXON_MRNA:INTRON	AACS	ENSG00000081760.17	ENST00000316519.11:ENST00000441247.6:ENST00000316543.14:ENST00000539251.5:ENST00000538851.5:ENST00000545511.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	114	2	6.14951	6.21815	6.28679	0.00793972	3.97355e-4	0.0596361	0.00741985
chr7	47525636	47525736	3589069	0	-	0.5	(0.485,0.523]	chr7	346138	183	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	249	2	5.1216	6.21781	7.31402	8.70042e-4	9.40315e-5	0.0175759	0.00261888
chr10	34432327	34432427	4667974	0	-	0.41	(0.39,0.419]	chr10	445511	57	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	5.99963	6.21776	6.43589	0.0142473	4.66094e-4	0.0817691	0.00828434
chr6	41723060	41723160	3132624	0	-	0.54	(0.523,0.58]	chr6	305482	2	SS5_PROX	SS5_PROX:INTRON	TFEB	ENSG00000112561.19	ENST00000358871.6:ENST00000373033.6:ENST00000230323.8:ENST00000677531.1:ENST00000403298.9:ENST00000420312.6:ENST00000424495.2:ENST00000678831.1:ENST00000419396.6:ENST00000416140.6:ENST00000678871.1:ENST00000394283.5:ENST00000679237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	120	2	5.65749	6.217655000000001	6.77782	0.0182707	9.47932e-5	0.0921579	0.00262417
chr1	21642770	21642870	419896	0	-	0.55	(0.523,0.58]	chr1	49018	160	INTRON	INTRON	RAP1GAP	ENSG00000076864.21	ENST00000374765.9:ENST00000471600.6:ENST00000542643.6:ENST00000611549.4:ENST00000495204.5:ENST00000374757.7:ENST00000317967.11:ENST00000447293.5:ENST00000482984.5:ENST00000464457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	114	2	6.074	6.21757	6.36114	0.00906277	3.21725e-4	0.0637469	0.0063695
chr7	39991436	39991536	3352743	0	+	0.42	(0.419,0.45]	chr7	324187	28	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1:ENST00000647518.1:ENST00000642660.1:ENST00000642626.1:ENST00000646437.1:ENST00000484589.2:ENST00000643915.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	335	2	5.06109	6.217280000000001	7.37347	0.00193067	3.95779e-5	0.0275437	0.00138507
chr2	121457386	121457486	1262291	0	-	0.49	(0.485,0.523]	chr2	136047	3	SS5_PROX	SS5_PROX:INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6	protein_coding	protein_coding	protein_coding	protein_coding	1	302	2	4.88195	6.217155	7.55236	0.00170779	9.10085e-6	0.025659	4.79891e-4
chr10	132574341	132574441	4617204	0	+	0.52	(0.485,0.523]	chr10	441139	358	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	114	2	6.10004	6.2166049999999995	6.33317	0.00860355	3.65589e-4	0.0623467	0.00700609
chr2	238370372	238370472	1073635	0	+	0.4	(0.39,0.419]	chr2	116402	139	INTRON	INTRON	TRAF3IP1	ENSG00000204104.12	ENST00000391993.7:ENST00000373327.5:ENST00000462122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	119	2	5.82918	6.21657	6.60396	0.0186329	2.96245e-4	0.0932878	0.00602194
chr2	222914023	222914122	1038241	0	+	0.323232	(0.29,0.33]	chr2	113229	24	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000542810.1:ENST00000540115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	559	2	3.884	6.21656	8.54912	2.01516e-4	5.41106e-5	0.00456792	0.0040742
chr16	1770648	1770748	6534006	0	-	0.66	(0.58,1]	chr16	649203	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	NME3	ENSG00000103024.8	ENST00000219302.8:ENST00000564628.1:ENST00000561637.5:ENST00000567271.1:ENST00000568561.5:ENST00000563498.1:ENST00000566600.1:ENST00000563367.1:ENST00000565379.1:ENST00000563854.1:ENST00000564252.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	124	2	5.39546	6.21646	7.03746	0.0168207	1.67087e-5	0.0884836	7.38685e-4
chr16	89915045	89915140	6526327	0	+	0.6	(0.58,1]	chr16	647716	16	UTR5	UTR5:EXON_MRNA:INTRON	ENSG00000267048:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000539976.1:ENST00000555427.1:ENST00000639847.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	0	124	2	5.39546	6.21646	7.03746	0.0168207	1.67087e-5	0.0884836	7.38685e-4
chr15	58886278	58886378	6119575	0	+	0.55	(0.523,0.58]	chr15	602130	163	INTRON	INTRON	RNF111	ENSG00000157450.16	ENST00000559757.1	protein_coding	protein_coding	protein_coding	protein_coding	0	114	2	6.19774	6.2163699999999995	6.235	0.0072907	4.59688e-4	0.0567247	0.00821903
chr22	20123667	20123761	7686879	0	+	0.585106	(0.58,1]	chr22	804213	6	INTRON	INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000331821.7:ENST00000411892.5:ENST00000423859.5:ENST00000418705.2:ENST00000448394.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	110	2	6.1942	6.21626	6.23832	0.00368616	2.24165e-4	0.0389784	0.00490779
chr7	143386680	143386777	3510772	0	+	0.587629	(0.58,1]	chr7	338486	21	INTRON	INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	110	2	6.1942	6.21626	6.23832	0.00368616	2.24165e-4	0.0389784	0.00490779
chr22	32990183	32990283	7794566	0	-	0.44	(0.419,0.45]	chr22	817470	91	INTRON	INTRON	SYN3	ENSG00000185666.15	ENST00000358763.7:ENST00000441821.5:ENST00000412575.1	protein_coding	protein_coding	protein_coding	protein_coding	0	121	2	5.75975	6.21622	6.67269	0.0231013	2.80959e-4	0.102982	0.00578259
chr10	99405455	99405555	4744805	0	-	0.36	(0.33,0.36]	chr10	453254	3	SS5_PROX	SS5_PROX:INTRON	GOT1	ENSG00000120053.12	ENST00000370508.7	protein_coding	protein_coding	protein_coding	protein_coding	1	257	2	5.20804	6.21615	7.22426	0.00133036	9.79567e-5	0.0222846	0.0026921
chr16	29273312	29273412	6433570	0	+	0.44	(0.419,0.45]	chr16	636745	212	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	1	332	2	5.01262	6.215809999999999	7.419	0.00210918	3.4701e-5	0.028892	0.00125791
chr16	1459763	1459840	6532770	0	-	0.701299	(0.58,1]	chr16	648974	2	INTRON	INTRON	CLCN7	ENSG00000103249.18	ENST00000382745.9:ENST00000448525.5:ENST00000262318.12:ENST00000569851.6	protein_coding	protein_coding	protein_coding	protein_coding	0	113	2	5.76934	6.21579	6.66224	0.00849371	5.8343e-5	0.0617717	0.00183149
chr16	85386937	85387037	6516940	0	+	0.57	(0.523,0.58]	chr16	646391	276	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	135	2	5.44845	6.2157	6.98295	0.00361636	0.00168728	0.0342681	0.0254298
chr13	49713609	49713708	5712146	0	-	0.353535	(0.33,0.36]	chr13	560489	22	INTRON	INTRON	KPNA3	ENSG00000102753.10	ENST00000261667.8	protein_coding	protein_coding	protein_coding	protein_coding	0	116	2	6.15136	6.21522	6.27908	0.00749528	8.48155e-4	0.0576451	0.0126615
chr17	38704447	38704547	6729102	0	+	0.64	(0.58,1]	chr17	676275	21	EXON_LNCRNA	EXON_LNCRNA	ENSG00000277969	ENSG00000277969.1	ENST00000612330.1	lncRNA	lncRNA	lncRNA	lncRNA	0	113	2	5.96814	6.21513	6.46212	0.00211728	5.06433e-4	0.028892	0.00881473
chr19	47271769	47271861	7276809	0	+	0.706522	(0.58,1]	chr19	747463	2	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCDC9	ENSG00000105321.14	ENST00000643617.1:ENST00000221922.11	protein_coding	protein_coding	protein_coding	protein_coding	0	113	2	5.96814	6.21513	6.46212	0.00211728	5.06433e-4	0.028892	0.00881473
chr16	29819851	29819949	6434929	0	+	0.459184	(0.45,0.485]	chr16	637001	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PAGR1:ENSG00000281348	ENSG00000280789.2:ENSG00000281348.1	ENST00000320330.8:ENST00000562285.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	254	2	5.02975	6.21511	7.40047	8.99052e-4	1.43387e-4	0.0178386	0.00356495
chr10	103159211	103159311	4754247	0	-	0.44	(0.419,0.45]	chr10	454570	57	INTRON	INTRON	NT5C2	ENSG00000076685.19	ENST00000675164.1:ENST00000343289.9:ENST00000404739.8:ENST00000675020.1:ENST00000674860.1:ENST00000676449.1:ENST00000676428.1:ENST00000674728.1:ENST00000675811.1:ENST00000369857.9:ENST00000675040.1:ENST00000675436.1:ENST00000674696.1:ENST00000675326.1:ENST00000675645.1:ENST00000470299.2:ENST00000452156.5:ENST00000461461.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	327	2	4.90291	6.2149149999999995	7.52692	0.00257377	2.53648e-5	0.0321387	9.97976e-4
chr3	15777755	15777854	1697995	0	-	0.454545	(0.45,0.485]	chr3	177556	111	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	117	2	6.02069	6.214840000000001	6.40899	0.00574958	0.00101549	0.0499659	0.0143256
chr10	70879308	70879407	4504859	0	+	0.494949	(0.485,0.523]	chr10	431039	21	UTR3	UTR3:EXON_MRNA	SGPL1	ENSG00000166224.17	ENST00000373202.8	protein_coding	protein_coding	protein_coding	protein_coding	1	260	2	5.63716	6.214765	6.79237	0.00241519	1.86339e-5	0.0309229	8.01857e-4
chr7	16990953	16991053	3323663	0	+	0.34	(0.33,0.36]	chr7	322059	742	INTRON	INTRON	AHR	ENSG00000106546.14	ENST00000645559.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	281	2	5.77949	6.214675	6.64986	0.00388382	1.74089e-5	0.0401804	7.61988e-4
chr7	216859	216959	3305823	0	+	0.6	(0.58,1]	chr7	320161	75	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	111	2	6.0945	6.214435	6.33437	0.00276493	3.47472e-4	0.0332418	0.00673552
chr6	154794708	154794808	3044729	0	+	0.5	(0.485,0.523]	chr6	296651	3	SS3_PROX	SS3_PROX:INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000367178.8	protein_coding	protein_coding	protein_coding	protein_coding	1	248	2	5.20424	6.21397	7.2237	0.00104165	7.28824e-5	0.0193905	0.00216451
chr3	58020054	58020154	1483154	0	+	0.52	(0.485,0.523]	chr3	159572	108	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	316	2	5.2059	6.2138349999999996	7.22177	8.88487e-4	2.58512e-5	0.0177608	0.0010125
chr13	113005477	113005577	5655678	0	+	0.59	(0.58,1]	chr13	555138	31	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	117	2	5.79283	6.21379	6.63475	0.00146621	8.4246e-4	0.023492	0.0125912
chr16	85589330	85589430	6518966	0	+	0.7	(0.58,1]	chr16	646396	326	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	1	276	2	5.04185	6.213565	7.38528	6.47986e-4	5.03066e-6	0.0149631	3.16553e-4
chr12	420426	420525	5148389	0	+	0.50505	(0.485,0.523]	chr12	500517	14	INTRON	INTRON	CCDC77	ENSG00000120647.10	ENST00000540180.5:ENST00000422000.5:ENST00000543504.5:ENST00000540344.5:ENST00000412006.6:ENST00000239830.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	114	2	6.2048	6.21325	6.2217	0.00693912	5.23665e-4	0.0553898	0.0090184
chr19	52048140	52048240	7400236	0	-	0.47	(0.45,0.485]	chr19	769961	2	SS5_PROX	SS5_PROX:INTRON	ZNF432	ENSG00000256087.7	ENST00000221315.10:ENST00000594154.5:ENST00000600368.5:ENST00000598745.5:ENST00000597273.1	protein_coding	protein_coding	protein_coding	protein_coding	0	116	2	6.0799	6.2132249999999996	6.34655	0.00642055	8.68466e-4	0.0529785	0.0128564
chr9	137569431	137569531	4435758	0	-	0.58	(0.523,0.58]	chr9	424466	39	INTRON	INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000475100.5:ENST00000472113.5:ENST00000485189.5:ENST00000467768.5:ENST00000477690.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	114	2	5.99431	6.213075	6.43184	0.0104033	2.62665e-4	0.0686837	0.00552802
chr4	2945911	2946011	2183679	0	-	0.59	(0.58,1]	chr4	221540	1	SS5_PROX	SS5_PROX:INTRON	NOP14	ENSG00000087269.16	ENST00000416614.7:ENST00000314262.10:ENST00000502735.5:ENST00000398071.4	protein_coding	protein_coding	protein_coding	protein_coding	2	568	2	5.77233	6.21225	6.65217	1.16879e-4	2.11767e-7	0.00603329	3.78431e-5
chr11	64271312	64271412	5049351	0	-	0.56	(0.523,0.58]	chr11	490332	3	SS5_PROX	SS5_PROX:INTRON	BAD	ENSG00000002330.14	ENST00000309032.8:ENST00000394532.7:ENST00000544785.1:ENST00000394531.3:ENST00000493798.1:ENST00000492141.1	protein_coding	protein_coding	protein_coding	protein_coding	0	116	2	6.00701	6.21217	6.41733	0.00490887	8.61362e-4	0.0457614	0.0127848
chr14	23513348	23513440	5757086	0	+	0.576087	(0.523,0.58]	chr14	564961	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ZFHX2-AS1	ENSG00000157306.14	ENST00000556354.5:ENST00000556613.1:ENST00000553985.1:ENST00000557568.1:ENST00000554403.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	116	2	6.00701	6.21217	6.41733	0.00490887	8.61362e-4	0.0457614	0.0127848
chr9	104862000	104862100	4361759	0	-	0.49	(0.485,0.523]	chr9	416404	2	SS3_PROX	SS3_PROX:INTRON	ABCA1	ENSG00000165029.17	ENST00000374736.8:ENST00000678995.1:ENST00000423487.6:ENST00000374733.1	protein_coding	protein_coding	protein_coding	protein_coding	0	127	2	5.61619	6.21209	6.80799	0.00247695	0.0023441	0.0305023	0.0266492
chr4	183140111	183140211	2167802	0	+	0.36	(0.33,0.36]	chr4	219488	401	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000508614.5:ENST00000448232.6:ENST00000513834.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	118	2	5.97713	6.212035	6.44694	0.00558656	0.00133012	0.0493906	0.0173248
chr11	71068058	71068158	5064974	0	-	0.46	(0.45,0.485]	chr11	492754	111	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000618363.4:ENST00000458632.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	115	2	5.98601	6.21187	6.43773	0.0119228	3.27319e-4	0.0741726	0.00645438
chr20	23634953	23635053	7537532	0	-	0.48	(0.45,0.485]	chr20	786641	3	SS5_PROX	SS5_PROX:INTRON	CST3	ENSG00000101439.9	ENST00000398411.5:ENST00000398409.1:ENST00000376925.8	protein_coding	protein_coding	protein_coding	protein_coding	6	1780	2	5.90733	6.211655	6.51598	6.19295e-5	1.2498e-7	0.00437718	2.69102e-5
chr22	23773676	23773775	7693457	0	+	0.616162	(0.58,1]	chr22	805203	3	INTRON	INTRON	MMP11	ENSG00000099953.10	ENST00000465385.5:ENST00000477567.5:ENST00000489582.5:ENST00000428253.1:ENST00000465730.1:ENST00000215743.8:ENST00000437086.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	144	2	5.20223	6.211565	7.2209	0.00411607	4.00118e-4	0.0374453	0.0114335
chr7	47515440	47515540	3588967	0	-	0.44	(0.419,0.45]	chr7	346138	81	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	6.1854	6.211475	6.23755	0.0110181	0.00100635	0.0708586	0.0142602
chr7	133876182	133876281	3491407	0	+	0.414141	(0.39,0.419]	chr7	336715	583	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	116	2	6.15206	6.211444999999999	6.27083	0.0111378	7.20415e-4	0.0715198	0.0112959
chr14	68900065	68900163	5999340	0	-	0.653061	(0.58,1]	chr14	588704	60	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	114	2	5.90055	6.211265	6.52198	0.00186556	6.1741e-4	0.0269723	0.0101143
chr10	18569758	18569858	4642426	0	-	0.4	(0.39,0.419]	chr10	443321	174	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	116	2	6.07786	6.210875	6.34389	0.012565	5.94847e-4	0.0761905	0.0098913
chr1	43424016	43424116	106295	0	+	0.59	(0.58,1]	chr1	12951	3	SS3_PROX	SS3_PROX:INTRON	SZT2	ENSG00000198198.17	ENST00000562955.2:ENST00000634258.3:ENST00000470139.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	112	2	6.00079	6.2107849999999996	6.42078	0.00230938	4.59827e-4	0.0302623	0.00821903
chr15	28218388	28218488	6207155	0	-	0.6	(0.58,1]	chr15	611113	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	0	112	2	6.00079	6.2107849999999996	6.42078	0.00230938	4.59827e-4	0.0302623	0.00821903
chr2	239372900	239373000	1392441	0	-	0.5	(0.485,0.523]	chr2	148759	196	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	259	2	5.62864	6.2105049999999995	6.79237	0.00241519	1.91494e-5	0.0309229	8.17298e-4
chr16	2027518	2027618	6372237	0	+	0.58	(0.523,0.58]	chr16	629167	3	SS5_PROX	SS5_PROX:INTRON	SLC9A3R2	ENSG00000065054.14	ENST00000567504.5:ENST00000424542.7:ENST00000432365.6	protein_coding	protein_coding	protein_coding	protein_coding	0	114	2	6.15367	6.210435	6.2672	0.00644151	5.76607e-4	0.0530091	0.00963379
chr11	120328998	120329094	4951110	0	+	0.395833	(0.39,0.419]	chr11	478339	10	INTRON	INTRON	TLCD5	ENSG00000181264.9	ENST00000531346.1:ENST00000314475.6:ENST00000375095.3:ENST00000529187.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	261	2	5.25415	6.2100550000000005	7.16596	0.00191011	9.81154e-5	0.0273722	0.00269558
chr2	186164142	186164241	1338945	0	-	0.484848	(0.45,0.485]	chr2	142313	10	INTRON	INTRON	LINC01473	ENSG00000237877.7	ENST00000658984.1:ENST00000658990.1:ENST00000655126.1:ENST00000667839.1:ENST00000670612.1:ENST00000668985.1:ENST00000661574.1:ENST00000666677.1:ENST00000665629.1:ENST00000671116.1:ENST00000419719.2:ENST00000667056.1:ENST00000671599.1	lncRNA	lncRNA	lncRNA	lncRNA	1	253	2	5.02975	6.20997	7.39019	9.17281e-4	1.43387e-4	0.0180726	0.00356495
chr22	15819165	15819263	7682916	0	+	0.540816	(0.523,0.58]	chr22	803568	1	INTRON	INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000447898.5	lncRNA	lncRNA	lncRNA	lncRNA	8	2271	2	6.03669	6.20986	6.38303	2.82305e-5	7.85673e-8	0.00299964	2.03727e-5
chr16	29273212	29273312	6433569	0	+	0.47	(0.45,0.485]	chr16	636745	211	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	1	316	2	5.09618	6.209645	7.32311	0.00127592	2.42204e-5	0.0217654	9.65272e-4
chr3	111741496	111741596	1534365	0	+	0.39	(0.36,0.39]	chr3	162941	84	INTRON	INTRON	PLCXD2:PHLDB2	ENSG00000240891.8:ENSG00000144824.21	ENST00000393934.7:ENST00000477665.2:ENST00000474484.1:ENST00000393923.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	126	2	5.69574	6.20963	6.72352	0.00411221	0.00299965	0.0414433	0.030427
chr9	112487917	112488017	4220191	0	+	0.36	(0.33,0.36]	chr9	400302	4	INTRON	INTRON	KIAA1958	ENSG00000165185.15	ENST00000337530.11:ENST00000536272.5:ENST00000374244.3	protein_coding	protein_coding	protein_coding	protein_coding	3	919	2	5.98641	6.209525	6.43264	8.8635e-5	2.07627e-6	0.00521905	1.70932e-4
chrX	85008518	85008618	7913569	0	+	0.46	(0.45,0.485]	chrX	828950	42	INTRON	INTRON	APOOL	ENSG00000155008.16	ENST00000373173.7	protein_coding	protein_coding	protein_coding	protein_coding	0	116	2	6.0506	6.209135	6.36767	0.00618594	9.38528e-4	0.0519442	0.0135546
chr21	43030395	43030493	7623318	0	+	0.469388	(0.45,0.485]	chr21	796571	4	UTR3	UTR3:EXON_MRNA	PKNOX1	ENSG00000160199.15	ENST00000432907.6:ENST00000291547.10	protein_coding	protein_coding	protein_coding	protein_coding	0	115	2	6.13678	6.20904	6.2813	0.00719875	7.46272e-4	0.056408	0.0115813
chr3	120026520	120026620	1886443	0	-	0.47	(0.45,0.485]	chr3	191428	45	INTRON	INTRON	GSK3B:ENSG00000288662	ENSG00000082701.17:ENSG00000288662.1	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000650344.2:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000677128.1:ENST00000678483.1:ENST00000677530.1:ENST00000677034.1:ENST00000679131.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	0	115	2	6.13678	6.20904	6.2813	0.00719875	7.46272e-4	0.056408	0.0115813
chr5	62443357	62443432	2429820	0	+	0.466667	(0.45,0.485]	chr5	242124	2	SS5_PROX	SS5_PROX:INTRON	IPO11	ENSG00000086200.17	ENST00000514647.5:ENST00000424533.5:ENST00000325324.11:ENST00000506200.5:ENST00000409296.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	115	2	6.13678	6.20904	6.2813	0.00719875	7.46272e-4	0.056408	0.0115813
chr2	70169256	70169356	1179237	0	-	0.4	(0.39,0.419]	chr2	128328	3	SS5_PROX	SS5_PROX:INTRON	C2orf42	ENSG00000115998.8	ENST00000264434.7:ENST00000420306.1	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	6.08441	6.208745	6.33308	0.00825437	0.00116356	0.0609913	0.0157899
chr16	79070228	79070328	6505122	0	+	0.43	(0.419,0.45]	chr16	645723	296	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	119	2	5.82136	6.2084150000000005	6.59547	0.0210659	3.45753e-4	0.0996078	0.00672667
chr20	32579071	32579171	7544675	0	-	0.57	(0.523,0.58]	chr20	787431	298	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000201961.6:ENST00000485364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	185	2	4.7629	6.208095	7.65329	0.0167014	4.42635e-4	0.0917029	0.0121006
chr9	100161643	100161743	4198577	0	+	0.44	(0.419,0.45]	chr9	398926	293	INTRON	INTRON	INVS	ENSG00000119509.13	ENST00000262457.7:ENST00000496467.5:ENST00000262456.6:ENST00000466647.5:ENST00000460636.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	118	2	5.88044	6.20758	6.53472	0.0192645	4.06527e-4	0.0954446	0.00755833
chr10	42826175	42826275	4481947	0	+	0.39	(0.36,0.39]	chr10	428486	20	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	0	118	2	5.99707	6.207084999999999	6.4171	0.00699528	0.00143949	0.0555241	0.0183435
chr19	5901134	5901234	7318282	0	-	0.54	(0.523,0.58]	chr19	755742	4	SS5_PROX	SS5_PROX:INTRON	NDUFA11	ENSG00000174886.14	ENST00000418389.6:ENST00000308961.5:ENST00000592634.5:ENST00000593233.1:ENST00000650663.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	115	2	6.03756	6.20678	6.376	0.00529293	7.92905e-4	0.047841	0.0120621
chr11	68269665	68269764	5057320	0	-	0.525253	(0.523,0.58]	chr11	492370	10	INTRON	INTRON	C11orf24	ENSG00000171067.11	ENST00000304271.11:ENST00000533310.5:ENST00000530166.5:ENST00000527280.1:ENST00000529590.5:ENST00000532534.5:ENST00000532969.1:ENST00000529339.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	116	2	5.9758	6.206675	6.43755	0.00473049	9.36996e-4	0.0449253	0.0135546
chr16	953497	953585	6531568	0	-	0.556818	(0.523,0.58]	chr16	648705	5	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1:ENST00000566609.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	116	2	5.9758	6.206675	6.43755	0.00473049	9.36996e-4	0.0449253	0.0135546
chr21	37495108	37495204	7620271	0	+	0.416667	(0.39,0.419]	chr21	796103	16	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2:ENST00000643808.1:ENST00000644367.1:ENST00000646224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	116	2	6.16727	6.20634	6.24541	0.00955236	9.41833e-4	0.0658012	0.0135546
chr3	30635946	30636046	1433386	0	+	0.41	(0.39,0.419]	chr3	153006	27	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4:ENST00000673250.1:ENST00000672866.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	261	2	5.2943	6.205845	7.11739	0.00208713	8.72858e-5	0.0287557	0.00247172
chr10	48041928	48042027	4680785	0	-	0.555556	(0.523,0.58]	chr10	446508	25	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	0	113	2	6.12478	6.2057850000000006	6.28679	0.00829271	3.97355e-4	0.0610772	0.00741985
chr16	78887030	78887130	6503289	0	+	0.47	(0.45,0.485]	chr16	645717	1067	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	251	2	5.17326	6.20563	7.238	0.00123254	9.32661e-5	0.021319	0.00260062
chr10	102305154	102305254	4573823	0	+	0.38	(0.36,0.39]	chr10	436767	107	INTRON	INTRON	GBF1	ENSG00000107862.7	ENST00000676513.1:ENST00000676939.1:ENST00000677439.1:ENST00000677240.1:ENST00000677618.1:ENST00000679155.1:ENST00000679280.1:ENST00000678036.1:ENST00000678476.1:ENST00000678504.1:ENST00000677247.1:ENST00000677655.1:ENST00000678351.1:ENST00000679238.1:ENST00000677487.1:ENST00000677506.1:ENST00000678666.1:ENST00000676560.1:ENST00000673650.1:ENST00000674034.1:ENST00000369983.5:ENST00000679003.1:ENST00000678486.1:ENST00000676682.1:ENST00000676807.1:ENST00000676993.1:ENST00000678575.1:ENST00000677522.1:ENST00000678293.1:ENST00000679087.1:ENST00000677683.1:ENST00000676861.1:ENST00000677491.1:ENST00000677461.1:ENST00000677871.1:ENST00000677431.1:ENST00000677852.1:ENST00000678401.1:ENST00000677956.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	116	2	5.97395	6.205205	6.43646	0.0145438	4.61522e-4	0.0823572	0.00824056
chr16	85373942	85374042	6516810	0	+	0.56	(0.523,0.58]	chr16	646391	146	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	716	2	5.90477	6.205105	6.50544	5.82506e-5	7.43517e-6	0.0042453	4.17372e-4
chr19	3529104	3529203	7191589	0	+	0.656566	(0.58,1]	chr19	732249	9	INTRON	INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	112	2	5.96814	6.204865	6.44159	0.00221069	5.06433e-4	0.0295736	0.00881473
chr9	134368377	134368476	4261107	0	+	0.666667	(0.58,1]	chr9	406311	414	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	109	2	6.14427	6.204855	6.26544	0.00407804	2.06156e-4	0.0413652	0.00461335
chr2	55205411	55205511	1149500	0	-	0.41	(0.39,0.419]	chr2	125544	233	INTRON	INTRON	CLHC1	ENSG00000162994.16	ENST00000401408.6:ENST00000428621.5:ENST00000494539.5:ENST00000407122.5:ENST00000406076.5:ENST00000411884.2:ENST00000487320.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	119	2	5.93476	6.2047550000000005	6.47475	0.00649594	0.00169249	0.0532359	0.0204799
chr2	10403380	10403479	719436	0	+	0.474747	(0.45,0.485]	chr2	84044	61	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4:ENST00000613496.4:ENST00000620771.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	133	2	5.47648	6.20459	6.9327	0.0039628	0.00220534	0.0368027	0.0295736
chr11	108801974	108802073	4936097	0	+	0.535354	(0.523,0.58]	chr11	475967	336	INTRON	INTRON	DDX10	ENSG00000178105.12	ENST00000690021.1:ENST00000686283.1:ENST00000322536.8:ENST00000648124.1:ENST00000688583.1:ENST00000686617.1:ENST00000688976.1:ENST00000687072.1:ENST00000526794.1:ENST00000692839.1:ENST00000689812.1:ENST00000534439.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	113	2	6.17383	6.204415	6.235	0.00760615	4.59688e-4	0.0579698	0.00821903
chr10	119394797	119394896	4595197	0	+	0.565657	(0.523,0.58]	chr10	439179	135	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	114	2	6.09678	6.204245	6.31171	0.00594629	6.74499e-4	0.0506158	0.0108081
chr6	169649475	169649575	3304358	0	-	0.5	(0.485,0.523]	chr6	319868	2	SS3_PROX	SS3_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	113	2	6.12521	6.2042	6.28319	0.00823189	4.20832e-4	0.0608959	0.00773187
chr14	52926424	52926523	5982304	0	-	0.454545	(0.45,0.485]	chr14	586653	67	INTRON	INTRON	FERMT2	ENSG00000073712.15	ENST00000395631.6:ENST00000341590.8:ENST00000343279.8:ENST00000553373.5:ENST00000399304.7:ENST00000554288.1:ENST00000555692.5:ENST00000554712.5:ENST00000557562.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	122	2	5.75605	6.204065	6.65208	0.00371059	0.002004	0.039096	0.0230381
chr14	94308170	94308266	6046254	0	-	0.5625	(0.523,0.58]	chr14	593049	16	INTRON	INTRON	SERPINA6	ENSG00000170099.6	ENST00000341584.4:ENST00000555056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	117	2	5.91127	6.203925	6.49658	0.00424382	0.00111349	0.0422099	0.0152496
chr2	134302734	134302834	897263	0	+	0.46	(0.45,0.485]	chr2	101215	318	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	0	114	2	6.03961	6.2038899999999995	6.36817	0.0108974	3.97249e-4	0.0707085	0.00741985
chr18	12430749	12430849	7020150	0	+	0.48	(0.45,0.485]	chr18	717086	2	SS3_PROX	SS3_PROX:INTRON	PRELID3A	ENSG00000141391.14	ENST00000336990.8:ENST00000590956.5:ENST00000440960.6:ENST00000589565.1:ENST00000592149.5:ENST00000587735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	114	2	6.18942	6.20376	6.2181	0.00844217	5.99406e-4	0.0617623	0.00993857
chr2	152337319	152337419	925484	0	+	0.49	(0.485,0.523]	chr2	103058	12	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	3	864	2	6.1166	6.203465	6.29033	9.14829e-5	8.13841e-7	0.0053051	9.17941e-5
chr20	62958753	62958849	7508284	0	+	0.604167	(0.58,1]	chr20	783180	8	INTRON	INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	278	2	5.13731	6.2034	7.26949	5.20448e-4	7.53179e-6	0.0132625	4.20943e-4
chr5	139653063	139653163	2549691	0	+	0.58	(0.523,0.58]	chr5	253168	15	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	1	246	2	5.0708	6.203055	7.33531	8.42028e-4	1.05737e-4	0.0172456	0.00286061
chr16	89306541	89306640	6659877	0	-	0.69697	(0.58,1]	chr16	666665	8	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1:ENST00000647539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	228	2	5.16129	6.203035	7.24478	3.78937e-4	4.39806e-5	0.011147	0.00149886
chr7	140453724	140453823	3726449	0	-	0.454545	(0.45,0.485]	chr7	357847	8	UTR3	UTR3:EXON_MRNA	MKRN1	ENSG00000133606.11	ENST00000255977.7:ENST00000475010.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	123	2	5.71928	6.2026900000000005	6.6861	0.00348661	0.00219685	0.0379065	0.0245167
chr12	52052222	52052297	5233990	0	+	0.506667	(0.485,0.523]	chr12	508233	3	SS3_PROX	SS3_PROX:INTRON	NR4A1	ENSG00000123358.20	ENST00000360284.7:ENST00000548977.5:ENST00000546842.5:ENST00000545748.5:ENST00000550082.5:ENST00000549102.1:ENST00000478250.1:ENST00000547206.5:ENST00000243050.5:ENST00000394824.2:ENST00000394825.6:ENST00000550763.1:ENST00000548232.1:ENST00000562373.1:ENST00000548733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	114	2	6.09319	6.202665	6.31214	0.00589975	7.11715e-4	0.0506158	0.0112082
chr3	12516410	12516510	1413679	0	+	0.38	(0.36,0.39]	chr3	151650	4	SS3_PROX	SS3_PROX:INTRON	TSEN2	ENSG00000154743.19	ENST00000681482.1:ENST00000446004.6:ENST00000679699.1:ENST00000681713.1:ENST00000680458.1:ENST00000680923.1:ENST00000679670.1:ENST00000680817.1:ENST00000412698.3:ENST00000455118.6:ENST00000680765.1:ENST00000415684.6:ENST00000681343.1:ENST00000679424.1:ENST00000680126.1:ENST00000679756.1:ENST00000475595.2:ENST00000681433.1:ENST00000680376.1:ENST00000680873.1:ENST00000681073.1:ENST00000454502.6:ENST00000284995.11:ENST00000402228.7:ENST00000680275.1:ENST00000679995.1:ENST00000681676.1:ENST00000473755.5:ENST00000679492.1:ENST00000681042.1:ENST00000680857.1:ENST00000679690.1:ENST00000679555.1:ENST00000681140.1:ENST00000679425.1:ENST00000680264.1:ENST00000680449.1:ENST00000681471.1:ENST00000680598.1:ENST00000679693.1:ENST00000679876.1:ENST00000444864.6:ENST00000679367.1:ENST00000681268.1:ENST00000680421.1:ENST00000680555.1:ENST00000679785.1:ENST00000679835.1:ENST00000680943.1:ENST00000681227.1:ENST00000680419.1:ENST00000680172.1:ENST00000680986.1:ENST00000680354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	116	2	5.9463800000000004	6.20248	6.45858	0.0151971	4.35017e-4	0.084474	0.007918
chr19	4493302	4493402	7193769	0	+	0.59	(0.58,1]	chr19	732771	2	SS3_PROX	SS3_PROX:INTRON	HDGFL2	ENSG00000167674.15	ENST00000616600.5:ENST00000621835.4:ENST00000589486.5:ENST00000615225.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	109	2	6.1942	6.20244	6.21068	0.00368616	2.44053e-4	0.0389784	0.00522003
chr1	30956978	30957078	434854	0	-	0.35	(0.33,0.36]	chr1	51492	26	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000527498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	263	2	5.51753	6.20243	6.88733	0.00251163	3.87728e-5	0.031696	0.0013603
chr22	50680607	50680704	7754975	0	+	0.484536	(0.45,0.485]	chr22	812716	8	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	114	2	6.01306	6.202395	6.39173	0.0113949	3.72107e-4	0.0723462	0.00707906
chr3	73027607	73027707	1503039	0	+	0.33	(0.29,0.33]	chr3	160777	116	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	247	2	5.23235	6.20176	7.17117	9.94585e-4	7.11095e-5	0.0189547	0.00213222
chr6	158026169	158026269	3059754	0	+	0.57	(0.523,0.58]	chr6	297373	80	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	0	113	2	6.18129	6.20128	6.22127	0.00699217	5.34061e-4	0.0555241	0.0091384
chr7	92290390	92290490	3414584	0	+	0.4	(0.39,0.419]	chr7	329803	435	INTRON	INTRON	ANKIB1	ENSG00000001629.10	ENST00000265742.8	protein_coding	protein_coding	protein_coding	protein_coding	0	118	2	5.96596	6.200815	6.43567	0.00694268	0.00156652	0.0553898	0.0194594
chr2	63026342	63026442	817190	0	+	0.32	(0.29,0.33]	chr2	92205	292	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000496857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	1041	2	6.07586	6.200735	6.32561	7.19949e-5	4.60497e-7	0.00475775	6.28258e-5
chr4	914444	914536	2178766	0	-	0.695652	(0.58,1]	chr4	220690	4	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000512325.3:ENST00000510022.5:ENST00000511229.5:ENST00000511983.5:ENST00000628912.1:ENST00000513935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	109	2	6.1825	6.2005099999999995	6.21852	0.00350812	2.66047e-4	0.0379357	0.00556524
chr3	65419437	65419536	1809644	0	-	0.383838	(0.36,0.39]	chr3	187193	176	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5	protein_coding	protein_coding	protein_coding	protein_coding	0	115	2	6.10438	6.2002749999999995	6.29617	0.0117824	6.68957e-4	0.073726	0.0107572
chr3	65812420	65812520	1813599	0	-	0.37	(0.36,0.39]	chr3	187296	919	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	115	2	6.12911	6.200255	6.2714	0.0113159	7.13729e-4	0.0722887	0.0112151
chr18	58151560	58151660	7072528	0	+	0.47	(0.45,0.485]	chr18	721129	16	INTRON	INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5:ENST00000588516.5:ENST00000456986.5:ENST00000675502.1:ENST00000675554.1:ENST00000675137.1:ENST00000587547.1:ENST00000675227.1:ENST00000357895.9:ENST00000435432.6:ENST00000586263.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	114	2	6.1644	6.200245	6.23609	0.00778782	6.92954e-4	0.0590114	0.0109657
chr15	58609536	58609631	6278046	0	-	0.315789	(0.29,0.33]	chr15	618664	5	EXON_MRNA	EXON_MRNA:INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000482945.5:ENST00000396136.6:ENST00000470269.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	114	2	6.05849	6.199635	6.34078	0.00499711	8.34822e-4	0.0463896	0.012554
chr1	23393179	23393278	424247	0	-	0.555556	(0.523,0.58]	chr1	49807	54	INTRON	INTRON	TCEA3	ENSG00000204219.11	ENST00000450454.7:ENST00000476978.2	protein_coding	protein_coding	protein_coding	protein_coding	0	113	2	5.96674	6.1992899999999995	6.43184	0.0109075	2.62665e-4	0.0707085	0.00552802
chr3	13203325	13203425	1691175	0	-	0.53	(0.523,0.58]	chr3	176566	388	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	113	2	5.96674	6.1992899999999995	6.43184	0.0109075	2.62665e-4	0.0707085	0.00552802
chr8	67258790	67258877	3991372	0	-	0.390805	(0.39,0.419]	chr8	382009	1	INTRON	INTRON	ARFGEF1	ENSG00000066777.9	ENST00000520381.5:ENST00000262215.8	protein_coding	protein_coding	protein_coding	protein_coding	0	115	2	6.12775	6.1992899999999995	6.27083	0.0115883	7.20415e-4	0.0731017	0.0112959
chr2	156100293	156100393	1285831	0	-	0.44	(0.419,0.45]	chr2	138339	753	INTRON	INTRON	LINC01876	ENSG00000226383.7	ENST00000635799.1:ENST00000662073.1:ENST00000659502.1:ENST00000428651.2:ENST00000661513.1:ENST00000657334.1:ENST00000638047.1:ENST00000637554.1:ENST00000636956.1:ENST00000637665.1:ENST00000637476.1:ENST00000637324.1	lncRNA	lncRNA	lncRNA	lncRNA	0	118	2	5.82136	6.19843	6.5755	0.0210659	3.64701e-4	0.0996078	0.00699922
chr7	98951004	98951104	3425858	0	+	0.49	(0.485,0.523]	chr7	330860	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7	protein_coding	protein_coding	protein_coding	protein_coding	0	113	2	5.96717	6.1977	6.42823	0.0108319	2.78987e-4	0.0707085	0.00577243
chr2	175599672	175599772	959343	0	+	0.41	(0.39,0.419]	chr2	105443	47	INTRON	INTRON	ENSG00000289349	ENSG00000289349.1	ENST00000692740.1:ENST00000685522.1	lncRNA	lncRNA	lncRNA	lncRNA	1	278	2	4.56226	6.19751	7.83276	6.87675e-4	5.47989e-4	0.0136476	0.0109099
chr14	75640355	75640454	5887156	0	+	0.434343	(0.419,0.45]	chr14	574963	5	INTRON	INTRON	FLVCR2:TTLL5	ENSG00000119686.10:ENSG00000119685.20	ENST00000238667.9:ENST00000554496.1:ENST00000555385.1:ENST00000539311.5:ENST00000556241.5:ENST00000553341.5:ENST00000553587.5:ENST00000556856.1:ENST00000554580.5:ENST00000555027.1:ENST00000554132.1:ENST00000556265.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	117	2	5.88044	6.19716	6.51388	0.0192645	4.29619e-4	0.0954446	0.00783248
chr22	19899766	19899865	7765041	0	-	0.434343	(0.419,0.45]	chr22	813988	3	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	117	2	5.88044	6.19716	6.51388	0.0192645	4.29619e-4	0.0954446	0.00783248
chr11	377926	378025	4784079	0	+	0.575758	(0.523,0.58]	chr11	457781	2	INTRON	INTRON	B4GALNT4	ENSG00000182272.12	ENST00000329962.11	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	5.8779	6.196820000000001	6.51574	0.00409625	0.00121652	0.0413652	0.0162693
chr9	136207230	136207329	4433088	0	-	0.313131	(0.29,0.33]	chr9	423667	10	UTR3	UTR3:EXON_MRNA	QSOX2	ENSG00000165661.17	ENST00000358701.10	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	5.69884	6.1966850000000004	6.69453	0.0155382	1.39595e-4	0.0849828	0.00349292
chr22	50680413	50680510	7754973	0	+	0.536082	(0.523,0.58]	chr22	812716	6	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	113	2	5.93864	6.19665	6.45466	0.0114442	2.45921e-4	0.0723462	0.00524396
chr11	27424152	27424251	5019424	0	-	0.353535	(0.33,0.36]	chr11	485493	109	INTRON	INTRON	LGR4	ENSG00000205213.14	ENST00000379214.9:ENST00000389858.4:ENST00000480977.2	protein_coding	protein_coding	protein_coding	protein_coding	0	120	2	5.81391	6.196619999999999	6.57933	0.00441125	0.00200357	0.0430586	0.0230381
chr11	70686504	70686604	5061144	0	-	0.53	(0.523,0.58]	chr11	492688	165	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	114	2	6.03756	6.196225	6.35489	0.00549977	7.92905e-4	0.0489559	0.0120621
chr18	74623481	74623581	7089506	0	+	0.37	(0.36,0.39]	chr18	722412	252	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000582337.5	protein_coding	protein_coding	protein_coding	protein_coding	0	115	2	6.00099	6.196095	6.3912	0.0139273	5.20645e-4	0.0805916	0.00899129
chr3	32695927	32696027	1438062	0	+	0.38	(0.36,0.39]	chr3	153275	1	SS5_PROX	SS5_PROX:INTRON	CNOT10	ENSG00000182973.20	ENST00000331889.10:ENST00000328834.10:ENST00000435630.5:ENST00000494439.5:ENST00000556853.5:ENST00000454516.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	115	2	6.00099	6.196095	6.3912	0.0139273	5.20645e-4	0.0805916	0.00899129
chr10	75727147	75727247	4523435	0	+	0.45	(0.419,0.45]	chr10	432271	792	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	352	2	4.81167	6.19559	7.57951	0.00108124	1.03399e-4	0.0198009	0.00280539
chr6	158572219	158572319	3064017	0	+	0.62	(0.58,1]	chr6	297687	116	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	0	115	2	5.79283	6.19548	6.59813	0.00158605	8.4246e-4	0.0245893	0.0125912
chr11	63871268	63871368	4867126	0	+	0.51	(0.485,0.523]	chr11	466776	15	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5:ENST00000543674.1:ENST00000540169.5	protein_coding	protein_coding	protein_coding	protein_coding	1	260	2	5.67905	6.195325	6.7116	0.00281636	1.6292e-5	0.0336649	7.25583e-4
chr20	25494192	25494290	7539895	0	-	0.612245	(0.58,1]	chr20	787018	23	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5:ENST00000461642.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	302	2	4.74509	6.19531	7.64553	1.49982e-4	3.7611e-5	0.00681825	0.00132758
chr10	14602950	14603050	4633690	0	-	0.5	(0.485,0.523]	chr10	442818	1	SS3_PROX	SS3_PROX:INTRON	FAM107B	ENSG00000065809.14	ENST00000181796.7:ENST00000468747.5:ENST00000378467.8:ENST00000487335.5:ENST00000442012.5:ENST00000471815.5:ENST00000491458.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	245	2	5.10939	6.1951	7.28081	9.29716e-4	9.76199e-5	0.0182159	0.00268525
chr11	63871168	63871268	4867125	0	+	0.52	(0.485,0.523]	chr11	466776	14	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5:ENST00000543674.1:ENST00000540169.5	protein_coding	protein_coding	protein_coding	protein_coding	0	114	2	5.8513	6.19509	6.53888	0.0131886	2.02788e-4	0.0785398	0.0045746
chr10	75853374	75853474	4524701	0	+	0.47	(0.45,0.485]	chr10	432282	700	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	114	2	6.10862	6.19496	6.2813	0.00719875	8.0459e-4	0.056408	0.012189
chr15	99603508	99603607	6198716	0	+	0.494949	(0.485,0.523]	chr15	609964	10	INTRON	INTRON	MEF2A	ENSG00000068305.18	ENST00000560493.5:ENST00000354410.9:ENST00000558812.5:ENST00000558856.5:ENST00000685785.1:ENST00000559036.5:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000558049.5:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1:ENST00000559903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	122	2	5.69477	6.194825	6.69488	0.00290687	0.00203227	0.0342042	0.0232814
chr6	35493601	35493701	3125631	0	-	0.48	(0.45,0.485]	chr6	304825	65	INTRON	INTRON	TEAD3	ENSG00000007866.22	ENST00000338863.13:ENST00000402886.9:ENST00000639578.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	115	2	5.84258	6.19463	6.54668	0.0151085	2.40818e-4	0.0841543	0.00517788
chr19	44706265	44706365	7386649	0	-	0.48	(0.45,0.485]	chr19	766957	67	INTRON	INTRON	CEACAM16-AS1	ENSG00000266903.2	ENST00000662585.1:ENST00000590796.1	lncRNA	lncRNA	lncRNA	lncRNA	0	115	2	6.02069	6.19418	6.36767	0.00618594	0.00101549	0.0519442	0.0143256
chr11	96068498	96068598	5110820	0	-	0.46	(0.45,0.485]	chr11	496560	764	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6:ENST00000618849.1	protein_coding	protein_coding	protein_coding	protein_coding	0	156	2	5.0722	6.19415	7.3161	0.00988295	0.0010596	0.0664239	0.0195612
chr10	63512043	63512143	4700543	0	-	0.31	(0.29,0.33]	chr10	447747	462	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000633035.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	116	2	5.73214	6.19403	6.65592	0.0146933	1.56274e-4	0.0826843	0.00379986
chr16	85433617	85433717	6517407	0	+	0.46	(0.45,0.485]	chr16	646391	743	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	263	2	4.67519	6.19383	7.71247	4.85705e-4	4.03946e-4	0.012769	0.00752202
chr7	105245014	105245114	3666542	0	-	0.38	(0.36,0.39]	chr7	353719	381	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	115	2	6.14074	6.1937549999999995	6.24677	0.00931845	0.0010006	0.0649153	0.0142243
chr10	47532582	47532681	4680508	0	-	0.555556	(0.523,0.58]	chr10	446443	87	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	1	244	2	5.09595	6.19374	7.29153	9.18957e-4	9.78604e-5	0.0180726	0.0026899
chr6	147932576	147932676	3031495	0	+	0.46	(0.45,0.485]	chr6	295875	1952	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	0	113	2	6.0913	6.193195	6.29509	0.00998516	4.85904e-4	0.0673647	0.00857996
chr21	36838270	36838370	7668839	0	-	0.46	(0.45,0.485]	chr21	801308	706	INTRON	INTRON	HLCS	ENSG00000159267.17	ENST00000674895.3:ENST00000336648.8:ENST00000612277.4:ENST00000399120.5:ENST00000675307.1:ENST00000675057.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	113	2	6.11646	6.19317	6.26988	0.00956667	5.20615e-4	0.0658012	0.00899129
chr6	143297513	143297613	3015807	0	+	0.54	(0.523,0.58]	chr6	294891	129	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000275235.8:ENST00000458219.1	protein_coding	protein_coding	protein_coding	protein_coding	0	112	2	6.074	6.193	6.312	0.00906277	3.69994e-4	0.0637469	0.00704866
chr8	9770946	9771038	3754885	0	+	0.380435	(0.36,0.39]	chr8	360881	3	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	1	261	2	4.86043	6.19272	7.52501	9.49013e-4	3.00463e-4	0.0184489	0.00607385
chrX	85976770	85976870	8079130	0	-	0.44	(0.419,0.45]	chrX	842686	48	INTRON	INTRON	CHM	ENSG00000188419.14	ENST00000357749.7:ENST00000467744.2:ENST00000615443.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	120	2	5.86184	6.19271	6.52358	0.00689831	0.00223565	0.0553728	0.024843
chr11	94966194	94966294	5108503	0	-	0.44	(0.419,0.45]	chr11	496300	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CWC15	ENSG00000150316.12	ENST00000279839.8:ENST00000616442.4:ENST00000621358.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	117	2	6.01795	6.19254	6.36713	0.00893106	0.00152916	0.0637469	0.0191213
chr19	33507055	33507154	7365924	0	-	0.585859	(0.58,1]	chr19	763467	57	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000651646.1:ENST00000590408.1:ENST00000593163.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	108	2	6.09256	6.19231	6.29206	0.00452436	1.89825e-4	0.0436138	0.0043642
chr21	35047541	35047641	7657427	0	-	0.48	(0.45,0.485]	chr21	801067	1542	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000482318.5:ENST00000455571.5:ENST00000475045.6:ENST00000416754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	123	2	5.68155	6.1921800000000005	6.70281	0.00338129	0.00241241	0.0371948	0.0261086
chr19	3529401	3529500	7191592	0	+	0.585859	(0.58,1]	chr19	732249	12	INTRON	INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	108	2	6.11865	6.192045	6.26544	0.00429384	2.06156e-4	0.042386	0.00461335
chr2	199386690	199386790	1353200	0	-	0.6	(0.58,1]	chr2	143744	45	INTRON	INTRON	SATB2	ENSG00000119042.17	ENST00000614512.4:ENST00000417098.6:ENST00000260926.9:ENST00000443023.5:ENST00000428695.5:ENST00000457245.5:ENST00000484124.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	108	2	6.11865	6.192045	6.26544	0.00429384	2.06156e-4	0.042386	0.00461335
chr16	977755	977855	6531816	0	-	0.61	(0.58,1]	chr16	648726	69	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000545827.6:ENST00000570014.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	109	2	6.0945	6.19182	6.28914	0.00303562	3.47472e-4	0.0350226	0.00673552
chr2	23760737	23760834	1101028	0	-	0.453608	(0.45,0.485]	chr2	120103	23	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000381024.4:ENST00000474583.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	114	2	6.0799	6.19164	6.30338	0.00692617	8.68466e-4	0.0553898	0.0128564
chr16	87738227	87738327	6656463	0	-	0.5	(0.485,0.523]	chr16	665892	72	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	112	2	6.10004	6.1916150000000005	6.28319	0.00860355	4.20832e-4	0.0623467	0.00773187
chr7	74499302	74499401	3391820	0	+	0.50505	(0.485,0.523]	chr7	327343	448	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	0	112	2	6.10004	6.1916150000000005	6.28319	0.00860355	4.20832e-4	0.0623467	0.00773187
chr10	18552770	18552870	4642256	0	-	0.37	(0.36,0.39]	chr10	443321	4	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	116	2	6.02697	6.191265	6.35556	0.0077647	0.00133548	0.0589564	0.0173572
chr10	75498593	75498693	4521144	0	+	0.4	(0.39,0.419]	chr10	432249	470	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	1	274	2	5.64417	6.19123	6.73829	0.00411485	3.10265e-5	0.0414433	0.00115612
chr9	77306417	77306510	4171262	0	+	0.44086	(0.419,0.45]	chr9	396444	4	INTRON	INTRON	VPS13A	ENSG00000197969.14	ENST00000376636.7:ENST00000360280.8:ENST00000643348.1:ENST00000645632.1:ENST00000423463.6:ENST00000493341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	115	2	6.09518	6.19115	6.28712	0.0138177	7.76382e-4	0.0803169	0.0118807
chr16	57375889	57375988	6466023	0	+	0.545455	(0.523,0.58]	chr16	641365	29	INTRON	INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1	protein_coding	protein_coding	protein_coding	protein_coding	0	115	2	5.94389	6.19072	6.43755	0.00473049	0.0010207	0.0449253	0.0143498
chr1	17677282	17677382	54984	0	+	0.56	(0.523,0.58]	chr1	5603	123	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	306	2	5.10356	6.19054	7.27752	0.00110138	2.03194e-5	0.020005	8.47843e-4
chr16	85451310	85451410	6517584	0	+	0.53	(0.523,0.58]	chr16	646391	920	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	119	2	5.77287	6.190365	6.60786	0.00345115	0.00160162	0.037649	0.0197827
chr1	43979943	43980011	110954	0	+	0.617647	(0.58,1]	chr1	13802	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	B4GALT2	ENSG00000117411.18	ENST00000498543.1:ENST00000434555.7:ENST00000372324.6:ENST00000481924.2:ENST00000497866.6:ENST00000485678.6:ENST00000356836.10:ENST00000309519.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	108	2	6.16945	6.190065000000001	6.21068	0.00387582	2.44053e-4	0.0401256	0.00522003
chr5	649011	649111	2378772	0	+	0.54	(0.523,0.58]	chr5	237646	7	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	297	2	4.52903	6.189914999999999	7.8508	0.00343357	3.21028e-6	0.0375808	2.30506e-4
chr21	45474281	45474381	7631009	0	+	0.49	(0.485,0.523]	chr21	797673	3	SS5_PROX	SS5_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	3	992	2	6.12871	6.189825	6.25094	4.85593e-5	2.51658e-6	0.00383774	1.94522e-4
chr17	72927842	72927942	6967567	0	-	0.42	(0.419,0.45]	chr17	710518	777	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	115	2	6.16812	6.189814999999999	6.21151	0.0123115	9.41863e-4	0.0756356	0.0135546
chr15	84760619	84760719	6174102	0	+	0.55	(0.523,0.58]	chr15	607314	116	INTRON	INTRON	ZNF592	ENSG00000166716.10	ENST00000560079.7	protein_coding	protein_coding	protein_coding	protein_coding	0	112	2	6.18129	6.189515	6.19774	0.0072907	5.34061e-4	0.0567247	0.0091384
chr14	89204135	89204235	6026136	0	-	0.47	(0.45,0.485]	chr14	591423	133	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000555010.1:ENST00000557718.5:ENST00000553353.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	252	2	4.89819	6.189185	7.48018	7.69095e-4	2.11565e-4	0.0164342	0.00471178
chr3	186948554	186948654	1650456	0	+	0.49	(0.485,0.523]	chr3	173622	3	SS3_PROX	SS3_PROX:INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000463542.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000468614.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	139	2	5.30159	6.189115	7.07664	0.00529578	0.00139256	0.044517	0.022808
chr5	10739731	10739831	2612434	0	-	0.43	(0.419,0.45]	chr5	260258	51	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5:ENST00000510546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	325	2	4.96973	6.18874	7.40775	0.00228028	3.58484e-5	0.0301696	0.00128261
chr7	133676825	133676925	3489410	0	+	0.23	[0,0.29]	chr7	336701	463	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	110	2	6.14169	6.188705	6.23572	0.00375427	4.88624e-4	0.0394676	0.00860857
chrX	133803928	133804028	8114206	0	-	0.36	(0.33,0.36]	chrX	845523	494	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	410	2	4.63446	6.188665	7.74287	4.84296e-4	6.79647e-5	0.012747	0.0020548
chr6	44843867	44843967	3138357	0	-	0.45	(0.419,0.45]	chr6	306644	136	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000674231.1:ENST00000371460.5:ENST00000371458.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	115	2	6.1854	6.18852	6.19164	0.0118587	0.00100635	0.0740271	0.0142602
chr8	99030426	99030526	3877363	0	+	0.45	(0.419,0.45]	chr8	371649	161	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000682853.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000441350.2:ENST00000684269.1:ENST00000682806.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	115	2	6.1854	6.18852	6.19164	0.0118587	0.00100635	0.0740271	0.0142602
chr2	3287915	3288015	1080986	0	-	0.6	(0.58,1]	chr2	117633	52	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	109	2	5.86491	6.188365	6.51182	0.00707578	9.48877e-5	0.0558168	0.00262417
chr2	238370472	238370572	1073636	0	+	0.66	(0.58,1]	chr2	116402	140	INTRON	INTRON	TRAF3IP1	ENSG00000204104.12	ENST00000391993.7:ENST00000373327.5:ENST00000462122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	109	2	5.86491	6.188365	6.51182	0.00707578	9.48877e-5	0.0558168	0.00262417
chr4	915097	915197	2178773	0	-	0.69	(0.58,1]	chr4	220691	2	SS5_PROX	SS5_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000512325.3:ENST00000510022.5:ENST00000511229.5:ENST00000511983.5:ENST00000628912.1:ENST00000513935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	108	2	6.1825	6.18835	6.1942	0.00368616	2.66047e-4	0.0389784	0.00556524
chr5	653885	653982	2378822	0	+	0.43299	(0.419,0.45]	chr5	237653	3	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000499639.2	protein_coding	processed_transcript	protein_coding	processed_transcript	0	117	2	5.82136	6.188305	6.55525	0.0210659	3.84925e-4	0.0996078	0.00726694
chr8	22200525	22200617	3769786	0	+	0.478261	(0.45,0.485]	chr8	362645	8	INTRON	INTRON	BMP1	ENSG00000168487.20	ENST00000354870.5:ENST00000520970.5:ENST00000518913.5:ENST00000520626.6:ENST00000520982.5:ENST00000306385.10:ENST00000306349.13:ENST00000471755.5:ENST00000483364.5:ENST00000521385.5:ENST00000522332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	119	2	5.61431	6.18758	6.76085	0.0217589	1.3016e-4	0.100615	0.00332369
chr8	130373070	130373170	4082929	0	-	0.47	(0.45,0.485]	chr8	388177	109	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000521075.5:ENST00000520927.5:ENST00000524299.1:ENST00000521426.5:ENST00000520625.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	119	2	5.61431	6.18758	6.76085	0.0217589	1.3016e-4	0.100615	0.00332369
chr20	8123155	8123255	7426488	0	+	0.34	(0.33,0.36]	chr20	773657	82	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2	protein_coding	protein_coding	protein_coding	protein_coding	0	119	2	5.81391	6.187525	6.56114	0.00455773	0.00200357	0.0438198	0.0230381
chr6	117686856	117686956	2992322	0	+	0.39	(0.36,0.39]	chr6	293135	104	INTRON	INTRON	NUS1	ENSG00000153989.8	ENST00000368494.4	protein_coding	protein_coding	protein_coding	protein_coding	1	256	2	5.17228	6.187495	7.20271	0.0017314	1.23537e-4	0.0257605	0.00321265
chr5	134407210	134407310	2764852	0	-	0.45	(0.419,0.45]	chr5	271088	39	INTRON	INTRON	CDKN2AIPNL	ENSG00000237190.4	ENST00000458198.3	protein_coding	protein_coding	protein_coding	protein_coding	1	317	2	4.6992	6.187105000000001	7.67501	0.00370929	1.64363e-5	0.039096	7.3104e-4
chr7	124846143	124846242	3702766	0	-	0.373737	(0.36,0.39]	chr7	355670	28	INTRON	INTRON	POT1	ENSG00000128513.16	ENST00000430927.6:ENST00000357628.8:ENST00000393329.5:ENST00000653274.1:ENST00000661898.1:ENST00000664330.1:ENST00000657892.1:ENST00000662531.1:ENST00000653241.1:ENST00000653892.1:ENST00000664366.1:ENST00000655761.1:ENST00000668382.1:ENST00000654766.1:ENST00000657333.1:ENST00000653819.1:ENST00000609106.5:ENST00000607932.5:ENST00000608057.5:ENST00000446993.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	114	2	6.15342	6.186985	6.22055	0.0108737	8.14665e-4	0.0707085	0.0123172
chr7	47376515	47376615	3587557	0	-	0.42	(0.419,0.45]	chr7	346036	65	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	115	2	5.9918	6.18697	6.38214	0.0162379	6.07209e-4	0.0873195	0.0100293
chr9	130846089	130846189	4255551	0	+	0.35	(0.33,0.36]	chr9	405266	102	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	0	118	2	5.68109	6.18676	6.69243	0.0201622	1.94643e-4	0.0973366	0.00443969
chr20	51598111	51598211	7577655	0	-	0.37	(0.36,0.39]	chr20	791738	17	UTR3	UTR3:EXON_MRNA	ATP9A	ENSG00000054793.14	ENST00000338821.6:ENST00000311637.9	protein_coding	protein_coding	protein_coding	protein_coding	0	121	2	5.76835	6.1867350000000005	6.60512	0.00506051	0.00252253	0.0465519	0.0270357
chr19	16131427	16131521	7216453	0	+	0.478723	(0.45,0.485]	chr19	737377	15	INTRON	INTRON	RAB8A	ENSG00000167461.12	ENST00000300935.8:ENST00000586682.1:ENST00000592971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	119	2	5.79191	6.18673	6.58155	0.00421879	0.00183113	0.0421633	0.0216571
chr6	47292774	47292873	3144336	0	-	0.363636	(0.36,0.39]	chr6	306762	58	INTRON	INTRON	TNFRSF21	ENSG00000146072.6	ENST00000296861.2	protein_coding	protein_coding	protein_coding	protein_coding	0	140	2	5.14958	6.186695	7.22381	0.0493212	5.11391e-5	0.146207	0.00167326
chr1	9293953	9294049	19593	0	+	0.46875	(0.45,0.485]	chr1	2201	5	INTRON	INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11	protein_coding	protein_coding	protein_coding	protein_coding	0	113	2	5.95844	6.186675	6.41491	0.0124835	0.00034885200000000003	0.0761905	0.00674746
chr11	118648276	118648376	4948703	0	+	0.53	(0.523,0.58]	chr11	477850	2	SS5_PROX	SS5_PROX:INTRON	PHLDB1	ENSG00000019144.20	ENST00000361417.6:ENST00000530994.5:ENST00000600882.6:ENST00000528594.5:ENST00000356063.9:ENST00000532517.5:ENST00000614369.4:ENST00000527898.5:ENST00000534140.2:ENST00000528875.5:ENST00000524713.5:ENST00000525226.5:ENST00000526537.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	114	2	5.9758	6.186305	6.39681	0.00509616	9.36996e-4	0.0467496	0.0135546
chr19	323135	323235	7303107	0	-	0.42	(0.419,0.45]	chr19	752407	91	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	116	2	6.04724	6.18623	6.32522	0.00956261	0.00142238	0.0658012	0.0181715
chr16	85588231	85588331	6518955	0	+	0.64	(0.58,1]	chr16	646396	315	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	114	2	5.79283	6.18615	6.57947	0.00165065	8.4246e-4	0.0250898	0.0125912
chr16	89431426	89431526	6661148	0	-	0.5	(0.485,0.523]	chr16	666752	1	SS3_PROX	SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	296	2	4.54224	6.18605	7.82986	0.00332934	3.71828e-6	0.0368376	2.57726e-4
chr2	69932153	69932253	826862	0	+	0.53	(0.523,0.58]	chr2	93204	100	INTRON	INTRON	MXD1	ENSG00000059728.11	ENST00000435990.5:ENST00000540449.5:ENST00000264444.7:ENST00000409442.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	113	2	5.85087	6.185945	6.52102	0.0132767	2.02818e-4	0.0787251	0.0045746
chr7	1008649	1008749	3526309	0	-	0.63	(0.58,1]	chr7	340566	77	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	268	2	4.67621	6.18588	7.69555	0.00147664	1.6765e-6	0.023604	1.47289e-4
chr15	65260955	65261026	6302815	0	-	0.492958	(0.485,0.523]	chr15	621285	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	PARP16	ENSG00000138617.16	ENST00000559805.1:ENST00000261888.10:ENST00000444347.2:ENST00000649807.2:ENST00000560149.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	133	2	5.21769	6.18577	7.15385	0.0359739	3.1927e-5	0.127853	0.00117872
chr1	950530	950626	379866	0	-	0.510417	(0.485,0.523]	chr1	42700	16	INTRON	INTRON	NOC2L	ENSG00000188976.11	ENST00000327044.7:ENST00000477976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	299	2	4.44023	6.185475	7.93072	0.00405196	2.67581e-6	0.0413652	2.02429e-4
chr20	8556624	8556724	7430834	0	+	0.49	(0.485,0.523]	chr20	773698	1846	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	1307	2	5.49383	6.185195	6.87656	9.07204e-5	3.081e-7	0.00527908	4.82688e-5
chr7	583613	583712	3523922	0	-	0.585859	(0.58,1]	chr7	340376	39	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000400758.6:ENST00000430040.5	protein_coding	protein_coding	protein_coding	protein_coding	1	225	2	5.30159	6.18511	7.06863	5.64522e-4	2.72732e-5	0.0138715	0.0010508
chr14	104871655	104871755	5925928	0	+	0.66	(0.58,1]	chr14	579942	27	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	112	2	5.66698	6.184735	6.70249	0.0102927	5.11463e-5	0.0684871	0.00167326
chr20	58689739	58689838	7498575	0	+	0.494949	(0.485,0.523]	chr20	781977	104	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1:ENST00000413559.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	3	855	2	6.02138	6.184595	6.34781	8.0876e-5	1.12194e-6	0.00498922	1.12275e-4
chr1	206241833	206241933	324042	0	+	0.34	(0.33,0.36]	chr1	36546	266	INTRON	INTRON	SRGAP2	ENSG00000266028.8	ENST00000573034.8:ENST00000419187.6:ENST00000605610.5:ENST00000624873.3:ENST00000605242.5:ENST00000572793.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	113	2	6.1633	6.18418	6.20506	0.00914439	7.36479e-4	0.0642449	0.0114654
chr1	31937654	31937754	437550	0	-	0.68	(0.58,1]	chr1	52120	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	112	2	5.86553	6.183915	6.5023	0.00194503	6.8352e-4	0.0275844	0.0108717
chr7	36261224	36261324	3346068	0	+	0.46	(0.45,0.485]	chr7	323698	218	INTRON	INTRON	EEPD1	ENSG00000122547.11	ENST00000242108.9:ENST00000534978.1	protein_coding	protein_coding	protein_coding	protein_coding	0	113	2	6.10862	6.183745	6.25887	0.00748565	8.0459e-4	0.0576451	0.012189
chr7	96703934	96704033	3645778	0	-	0.424242	(0.419,0.45]	chr7	350876	67	INTRON	INTRON	SEM1	ENSG00000127922.10	ENST00000466986.5:ENST00000617133.4:ENST00000618105.4:ENST00000619259.4:ENST00000613919.4:ENST00000417009.5:ENST00000623693.3:ENST00000623498.3:ENST00000444799.5:ENST00000449279.5:ENST00000488005.5:ENST00000413065.5:ENST00000248566.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	119	2	5.86184	6.1833849999999995	6.50493	0.00711588	0.00223565	0.0560048	0.024843
chr11	954693	954792	4786658	0	+	0.40404	(0.39,0.419]	chr11	458496	63	INTRON	INTRON	AP2A2	ENSG00000183020.15	ENST00000529818.6:ENST00000332231.9:ENST00000448903.7:ENST00000534328.6:ENST00000525796.5:ENST00000529858.6:ENST00000693238.1:ENST00000687890.1:ENST00000687792.1:ENST00000528815.5:ENST00000528195.6:ENST00000531548.6:ENST00000534485.6:ENST00000527024.2:ENST00000526753.6:ENST00000530801.6:ENST00000524559.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	114	2	6.16727	6.18338	6.19949	0.0103045	9.41833e-4	0.0684871	0.0135546
chr22	15818492	15818588	7682909	0	+	0.635417	(0.58,1]	chr22	803567	1	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000383038.7:ENST00000447898.5:ENST00000607933.1	lncRNA	lncRNA	lncRNA	lncRNA	1	233	2	4.83163	6.182634999999999	7.53364	1.9478e-4	1.31533e-4	0.00785001	0.00335491
chr10	79165928	79166028	4533016	0	+	0.6	(0.58,1]	chr10	432438	34	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	3	790	2	5.58656	6.182410000000001	6.77826	1.00193e-5	1.89176e-6	0.00187093	1.60299e-4
chr2	233075463	233075563	1057362	0	+	0.36	(0.33,0.36]	chr2	115043	145	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000451407.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	129	2	5.50696	6.1824	6.85784	0.00418696	0.00265287	0.0379935	0.0326475
chr16	85235465	85235565	6515423	0	+	0.57	(0.523,0.58]	chr16	646377	77	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	135	2	5.35452	6.182370000000001	7.01022	0.00453096	0.0016001	0.0400651	0.0246878
chr11	57792452	57792545	4857868	0	+	0.462366	(0.45,0.485]	chr11	465195	4	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000530068.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	398	2	4.51807	6.182205	7.84634	3.71603e-4	8.24304e-5	0.0110758	0.00236673
chr7	241902	242002	3306074	0	+	0.52	(0.485,0.523]	chr7	320161	326	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	247	2	5.43688	6.18207	6.92726	0.00186327	3.52233e-5	0.0269723	0.00126754
chr20	58445628	58445727	7498116	0	+	0.373737	(0.36,0.39]	chr20	781915	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VAPB	ENSG00000124164.16	ENST00000475243.6:ENST00000265619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	116	2	5.96653	6.181705	6.39688	0.00723998	0.00155347	0.0565323	0.0193429
chr6	48066556	48066655	3146614	0	-	0.414141	(0.39,0.419]	chr6	306784	571	INTRON	INTRON	PTCHD4	ENSG00000244694.8	ENST00000339488.9:ENST00000398738.3:ENST00000679966.1	protein_coding	protein_coding	protein_coding	protein_coding	2	345	2	4.85809	6.181485	7.50488	0.00101955	8.09102e-5	0.0191632	0.00233641
chrX	44963388	44963488	7872576	0	+	0.53	(0.523,0.58]	chrX	825088	16	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	113	2	6.00701	6.18095	6.35489	0.00549977	8.61362e-4	0.0489559	0.0127848
chr6	17693107	17693207	3105274	0	-	0.34	(0.33,0.36]	chr6	301042	41	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	0	114	2	5.87022	6.1806149999999995	6.49101	0.0148989	3.40831e-4	0.0834354	0.00667174
chr16	81540982	81541082	6508703	0	+	0.34	(0.33,0.36]	chr16	645911	451	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	116	2	5.91404	6.18049	6.44694	0.00558656	0.00156051	0.0493906	0.0194067
chr7	105733797	105733897	3670257	0	-	0.56	(0.523,0.58]	chr7	353945	423	INTRON	INTRON	ATXN7L1	ENSG00000146776.15	ENST00000419735.8	protein_coding	protein_coding	protein_coding	protein_coding	0	111	2	6.074	6.180395	6.28679	0.00906277	3.97355e-4	0.0637469	0.00741985
chr3	182976393	182976493	1964441	0	-	0.46	(0.45,0.485]	chr3	199617	103	INTRON	INTRON	DCUN1D1	ENSG00000043093.15	ENST00000292782.9:ENST00000632685.1:ENST00000460412.6:ENST00000469954.5:ENST00000492563.1:ENST00000497606.5:ENST00000487822.5:ENST00000466812.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	112	2	6.06569	6.18039	6.29509	0.0104281	4.85904e-4	0.0687558	0.00857996
chr20	61971386	61971486	7582828	0	-	0.55	(0.523,0.58]	chr20	792262	172	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000474089.5	protein_coding	protein_coding	protein_coding	protein_coding	0	111	2	6.09961	6.18037	6.26113	0.00866655	4.27166e-4	0.0623824	0.00779962
chr16	75236244	75236330	6644470	0	-	0.5	(0.485,0.523]	chr16	664410	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000566982.1:ENST00000563038.5:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10:ENST00000569340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	391	2	4.60636	6.1801449999999996	7.75393	3.56163e-4	5.32188e-5	0.0107631	0.00172147
chr2	69559277	69559377	1176390	0	-	0.33	(0.29,0.33]	chr2	128070	19	INTRON	INTRON	AAK1	ENSG00000115977.21	ENST00000409085.9:ENST00000606389.7:ENST00000409068.5:ENST00000406297.7:ENST00000495836.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	113	2	5.99803	6.1801200000000005	6.36221	0.00480225	9.81074e-4	0.0452644	0.0140347
chr2	239290970	239291070	1391618	0	-	0.57	(0.523,0.58]	chr2	148740	394	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	111	2	6.04792	6.17996	6.312	0.00948306	3.69994e-4	0.0656057	0.00704866
chr6	21079918	21080018	2869403	0	+	0.37	(0.36,0.39]	chr6	279758	143	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	114	2	6.11313	6.17995	6.24677	0.00931845	0.00107374	0.0649153	0.0148869
chr7	111290692	111290792	3684971	0	-	0.33	(0.29,0.33]	chr7	354615	3268	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	116	2	5.66475	6.17964	6.69453	0.0164475	1.39595e-4	0.0877632	0.00349292
chr11	12783529	12783629	4802737	0	+	0.49	(0.485,0.523]	chr11	460563	187	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	0	113	2	6.00341	6.179365	6.35532	0.00545609	9.07333e-4	0.0486984	0.0132726
chr19	34227888	34227988	7241877	0	+	0.33	(0.29,0.33]	chr19	741560	6	UTR3	UTR3:EXON_MRNA	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000540746.6:ENST00000433627.9:ENST00000588582.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	329	2	4.94233	6.17928	7.41623	6.02892e-4	4.14914e-5	0.0144016	0.00143855
chr19	47228446	47228546	7392366	0	-	0.64	(0.58,1]	chr19	768104	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	1	267	2	4.90058	6.179095	7.45761	8.93566e-4	3.90231e-6	0.017813	2.65981e-4
chr17	38746267	38746367	6895638	0	-	0.6	(0.58,1]	chr17	700402	4	SS5_PROX	SS5_PROX:INTRON	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000611883.4:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	1	224	2	5.28938	6.179005	7.06863	5.64522e-4	2.84381e-5	0.0138715	0.00108203
chr22	50679928	50680025	7754968	0	+	0.536082	(0.523,0.58]	chr22	812716	1	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	112	2	5.88072	6.17892	6.47712	0.0126258	2.30436e-4	0.0761905	0.00498593
chr19	49988592	49988692	7397955	0	-	0.51	(0.485,0.523]	chr19	769507	1	SS3_PROX	SS3_PROX:INTRON	VRK3	ENSG00000105053.11	ENST00000316763.8:ENST00000377011.6:ENST00000599538.5:ENST00000596814.5:ENST00000601341.5:ENST00000594948.5:ENST00000601912.5:ENST00000594092.5:ENST00000593912.5:ENST00000600284.5:ENST00000593919.5:ENST00000594090.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	111	2	6.07443	6.17881	6.28319	0.00899749	4.20832e-4	0.0637469	0.00773187
chr20	3192121	3192221	7515115	0	-	0.51	(0.485,0.523]	chr20	784522	3	SS3_PROX	SS3_PROX:INTRON	DDRGK1	ENSG00000198171.13	ENST00000354488.8:ENST00000470203.1:ENST00000380201.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	111	2	6.07443	6.17881	6.28319	0.00899749	4.20832e-4	0.0637469	0.00773187
chr7	6703667	6703765	3542750	0	-	0.489796	(0.485,0.523]	chr7	342318	29	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	0	111	2	6.07443	6.17881	6.28319	0.00899749	4.20832e-4	0.0637469	0.00773187
chr5	7883477	7883577	2381595	0	+	0.46	(0.45,0.485]	chr5	238117	2	SS5_PROX	SS5_PROX:INTRON	MTRR	ENSG00000124275.15	ENST00000264668.6:ENST00000513439.5:ENST00000511461.5:ENST00000440940.7:ENST00000510525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	115	2	5.74913	6.178725	6.60832	0.017574	2.02062e-4	0.0906595	0.00457229
chr17	39671968	39672068	6898418	0	-	0.59	(0.58,1]	chr17	700783	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	PGAP3	ENSG00000161395.14	ENST00000579146.5:ENST00000300658.9:ENST00000378011.8:ENST00000309862.10:ENST00000619169.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	109	2	6.00079	6.178625	6.35646	0.00264106	4.59827e-4	0.0325876	0.00821903
chr19	56404952	56405050	7294714	0	+	0.438776	(0.419,0.45]	chr19	751199	1	INTRON	INTRON	ZNF583	ENSG00000198440.9	ENST00000588635.1:ENST00000291598.11:ENST00000537943.5:ENST00000539211.6:ENST00000333201.13:ENST00000391778.3:ENST00000436972.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	121	2	5.59315	6.178445	6.76374	0.029494	2.19456e-4	0.116079	0.00483494
chr20	36314103	36314203	7469128	0	+	0.69	(0.58,1]	chr20	777805	72	INTRON	INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10	protein_coding	protein_coding	protein_coding	protein_coding	0	110	2	5.73602	6.1784300000000005	6.62084	0.00904546	6.67603e-5	0.0637469	0.00202861
chr7	47515640	47515740	3588969	0	-	0.44	(0.419,0.45]	chr7	346138	83	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	114	2	6.04441	6.1779399999999995	6.31147	0.0149622	7.29222e-4	0.0835955	0.0113963
chr7	96977449	96977548	3646064	0	-	0.373737	(0.36,0.39]	chr7	350894	80	INTRON	INTRON	DLX6-AS1	ENSG00000231764.11	ENST00000430027.3:ENST00000659765.1:ENST00000458352.5:ENST00000656954.1:ENST00000605417.6:ENST00000654988.1:ENST00000658043.1:ENST00000452769.4:ENST00000437331.4:ENST00000430404.7	lncRNA	lncRNA	lncRNA	lncRNA	0	120	2	5.76835	6.177865	6.58738	0.00521906	0.00252253	0.0475638	0.0270357
chr9	133734703	133734801	4427930	0	-	0.632653	(0.58,1]	chr9	423136	1	INTRON	INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000427237.6:ENST00000298628.6	protein_coding	protein_coding	protein_coding	protein_coding	0	110	2	5.93474	6.177759999999999	6.42078	0.00230938	5.58693e-4	0.0302623	0.00944382
chr2	32461204	32461303	748826	0	+	0.525253	(0.523,0.58]	chr2	87278	69	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	0	111	2	5.99431	6.177725	6.36114	0.0104033	3.21725e-4	0.0686837	0.0063695
chr12	132792874	132792972	5540390	0	-	0.683673	(0.58,1]	chr12	546816	12	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	107	2	6.14427	6.177474999999999	6.21068	0.00407804	2.44053e-4	0.0413652	0.00522003
chr10	103702007	103702107	4757120	0	-	0.48	(0.45,0.485]	chr10	454791	85	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	250	2	4.88435	6.177405	7.47046	7.83923e-4	2.20334e-4	0.0166116	0.00485102
chr3	194414634	194414734	1978984	0	-	0.38	(0.36,0.39]	chr3	201299	9	EXON_MRNA	EXON_MRNA:INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000429136.7:ENST00000645621.1:ENST00000691700.1:ENST00000461660.2:ENST00000685123.1:ENST00000642744.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	119	2	5.80333	6.1772849999999995	6.55124	0.0055566	0.00231859	0.049265	0.0255753
chr12	6767913	6768008	5165695	0	+	0.589474	(0.58,1]	chr12	502315	8	INTRON	INTRON	PTMS	ENSG00000159335.18	ENST00000540667.5:ENST00000309083.8:ENST00000389462.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	113	2	5.79283	6.1766950000000005	6.56056	0.00171861	8.4246e-4	0.025659	0.0125912
chr10	132766445	132766544	4619137	0	+	0.585859	(0.58,1]	chr10	441207	2	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000445580.1	protein_coding	protein_coding	protein_coding	protein_coding	1	224	2	5.3376	6.17584	7.01408	6.3791e-4	2.41008e-5	0.0148365	9.61888e-4
chr3	120630788	120630886	1887415	0	-	0.306122	(0.29,0.33]	chr3	191478	19	INTRON	INTRON	HGD	ENSG00000113924.12	ENST00000283871.10:ENST00000492108.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	476	2	5.18932	6.17579	7.16226	3.16488e-4	3.42706e-5	0.0101066	0.00124634
chr18	68696865	68696935	7175716	0	-	0.442857	(0.419,0.45]	chr18	729590	3	SS5_PROX	SS5_PROX:INTRON	TMX3	ENSG00000166479.10	ENST00000299608.7:ENST00000564631.5:ENST00000569053.5:ENST00000443099.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	114	2	5.9918	6.175385	6.35897	0.0162379	6.44911e-4	0.0873195	0.0104285
chr6	170400163	170400263	3076581	0	+	0.46	(0.45,0.485]	chr6	299192	42	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	12	2991	2	6.15053	6.1746	6.19867	3.34485e-5	8.88428e-8	0.00320976	2.19747e-5
chr18	49046101	49046201	7158122	0	-	0.51	(0.485,0.523]	chr18	727833	15	INTRON	INTRON	DYM	ENSG00000141627.14	ENST00000675505.1:ENST00000269445.10:ENST00000442713.6:ENST00000577734.1	protein_coding	protein_coding	protein_coding	protein_coding	0	111	2	6.15007	6.17412	6.19817	0.00723584	6.0909e-4	0.0565323	0.0100377
chr12	3226646	3226746	5160043	0	+	0.43	(0.419,0.45]	chr12	501358	109	INTRON	INTRON	TSPAN9	ENSG00000011105.14	ENST00000537971.5:ENST00000444315.6:ENST00000011898.10:ENST00000649909.1:ENST00000640568.1:ENST00000407263.2:ENST00000431374.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	124	2	5.64904	6.173485	6.69793	0.00514373	0.00368884	0.0471181	0.0348088
chr14	104720581	104720679	5925632	0	+	0.622449	(0.58,1]	chr14	579884	19	UTR3	UTR3:EXON_MRNA	INF2	ENSG00000203485.14	ENST00000330634.11:ENST00000392634.9:ENST00000675207.1:ENST00000675638.1	protein_coding	protein_coding	protein_coding	protein_coding	0	116	2	5.67642	6.17344	6.67046	0.00135763	0.00117039	0.0224546	0.0157899
chr16	953952	954052	6531573	0	-	0.59	(0.58,1]	chr16	648706	2	SS5_PROX	SS5_PROX:INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1:ENST00000566609.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	116	2	5.67642	6.17344	6.67046	0.00135763	0.00117039	0.0224546	0.0157899
chr1	94463188	94463287	187301	0	+	0.434343	(0.419,0.45]	chr1	20299	42	INTRON	INTRON	ABCD3	ENSG00000117528.14	ENST00000370214.9:ENST00000647998.2:ENST00000315713.5:ENST00000468860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	114	2	6.13171	6.173245	6.21478	0.011428	0.00115219	0.0723462	0.0157112
chr14	103403291	103403390	5922265	0	+	0.434343	(0.419,0.45]	chr14	579321	39	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	114	2	6.13171	6.173245	6.21478	0.011428	0.00115219	0.0723462	0.0157112
chr10	103691828	103691928	4757014	0	-	0.52	(0.485,0.523]	chr10	454779	138	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	292	2	4.78354	6.173205	7.56287	0.00207631	8.79998e-6	0.0287197	4.68141e-4
chr3	136430776	136430875	1922113	0	-	0.414141	(0.39,0.419]	chr3	195528	74	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2:ENST00000487065.5:ENST00000492318.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	113	2	6.02618	6.173065	6.31995	0.0136549	6.3352e-4	0.0798074	0.0102998
chr10	75940718	75940818	4525576	0	+	0.41	(0.39,0.419]	chr10	432292	568	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	114	2	6.05569	6.1728000000000005	6.28991	0.00887176	0.0012512	0.0634853	0.0166412
chr11	120328808	120328903	4951108	0	+	0.389474	(0.36,0.39]	chr11	478339	8	INTRON	INTRON	TLCD5	ENSG00000181264.9	ENST00000531346.1:ENST00000314475.6:ENST00000375095.3:ENST00000529187.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	257	2	5.35444	6.172065	6.98969	0.00255527	7.26617e-5	0.0320164	0.00216169
chr7	47359102	47359201	3587382	0	-	0.474747	(0.45,0.485]	chr7	346030	124	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	115	2	5.89443	6.1717949999999995	6.44916	0.00535292	0.00141013	0.0480663	0.0180659
chrX	75449202	75449302	8071445	0	-	0.46	(0.45,0.485]	chrX	841988	173	INTRON	INTRON	ZDHHC15	ENSG00000102383.14	ENST00000373367.8:ENST00000541184.1	protein_coding	protein_coding	protein_coding	protein_coding	0	115	2	5.89443	6.1717949999999995	6.44916	0.00535292	0.00141013	0.0480663	0.0180659
chr16	81627290	81627390	6509570	0	+	0.55	(0.523,0.58]	chr16	645926	52	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	3	484	2	4.16291	6.171485	8.18006	0.00195192	1.08043e-6	0.0276541	1.09706e-4
chr1	17677082	17677182	54982	0	+	0.55	(0.523,0.58]	chr1	5603	121	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	295	2	4.93069	6.17127	7.41185	0.00155918	1.32752e-5	0.0243306	6.28604e-4
chr10	11528164	11528262	4628838	0	-	0.265306	[0,0.29]	chr10	442283	2	INTRON	INTRON	USP6NL	ENSG00000148429.15	ENST00000609104.6:ENST00000379237.6:ENST00000277575.5	protein_coding	protein_coding	protein_coding	protein_coding	0	110	2	5.99195	6.170835	6.34972	0.00298169	7.44037e-4	0.0347875	0.0115713
chr10	103700610	103700710	4757106	0	-	0.56	(0.523,0.58]	chr10	454791	71	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	112	2	6.00701	6.170235	6.33346	0.00571732	8.61362e-4	0.0498083	0.0127848
chr19	3530093	3530192	7191599	0	+	0.575758	(0.523,0.58]	chr19	732249	19	INTRON	INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	112	2	6.00701	6.170235	6.33346	0.00571732	8.61362e-4	0.0498083	0.0127848
chr16	14435791	14435883	6552194	0	-	0.521739	(0.485,0.523]	chr16	652241	2	UTR3	UTR3:EXON_MRNA	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7	protein_coding	protein_coding	protein_coding	protein_coding	0	119	2	5.5129	6.1701999999999995	6.8275	0.0229047	8.64447e-5	0.102982	0.00245611
chr7	47353526	47353626	3587326	0	-	0.46	(0.45,0.485]	chr7	346030	68	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	112	2	5.90167	6.169700000000001	6.43773	0.0137135	3.27319e-4	0.0799457	0.00645438
chr16	85400731	85400831	6517078	0	+	0.44	(0.419,0.45]	chr16	646391	414	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	128	2	5.52959	6.169065	6.80854	0.00484244	0.00425752	0.0422596	0.0418176
chr4	184460541	184460641	2366896	0	-	0.39	(0.36,0.39]	chr4	236383	41	INTRON	INTRON	IRF2	ENSG00000168310.12	ENST00000696840.1:ENST00000393593.8:ENST00000696846.1:ENST00000696845.1:ENST00000696844.1:ENST00000502750.2:ENST00000696843.1:ENST00000696842.1:ENST00000696852.1:ENST00000696853.1:ENST00000696851.1:ENST00000696850.1:ENST00000696849.1:ENST00000510814.6:ENST00000505067.6:ENST00000504340.2:ENST00000507523.5:ENST00000512020.5:ENST00000506230.5:ENST00000509274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	113	2	5.9463800000000004	6.16879	6.3912	0.0151971	5.20645e-4	0.084474	0.00899129
chr11	70742484	70742584	5061706	0	-	0.51	(0.485,0.523]	chr11	492701	246	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	112	2	6.00341	6.1686499999999995	6.33389	0.00567224	9.07333e-4	0.0496143	0.0132726
chr1	246898636	246898736	706770	0	-	0.37	(0.36,0.39]	chr1	82677	3	SS3_PROX	SS3_PROX:INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	113	2	6.11313	6.168565	6.224	0.00967792	0.00107374	0.0661428	0.0148869
chr3	50329880	50329980	1775222	0	-	0.46	(0.45,0.485]	chr3	184321	2	UTR3	UTR3:EXON_MRNA	RASSF1	ENSG00000068028.18	ENST00000327761.7:ENST00000616212.4:ENST00000482447.1:ENST00000357043.6:ENST00000395117.6:ENST00000359365.9:ENST00000395126.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	113	2	5.99015	6.16835	6.34655	0.00642055	0.00110015	0.0529785	0.015136
chr5	138389714	138389813	2543675	0	+	0.40404	(0.39,0.419]	chr5	252603	27	INTRON	INTRON	KDM3B	ENSG00000120733.14	ENST00000314358.10:ENST00000510866.5:ENST00000542866.2:ENST00000507996.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	119	2	5.76778	6.167915000000001	6.56805	0.00553508	0.0025422	0.0491917	0.0271978
chr8	127175261	127175361	4066740	0	-	0.4	(0.39,0.419]	chr8	387403	5	INTRON	INTRON	CASC19	ENSG00000254166.3	ENST00000642100.1:ENST00000641912.1:ENST00000641421.1:ENST00000641701.1:ENST00000641991.1:ENST00000641588.1:ENST00000642088.1:ENST00000641425.1:ENST00000641706.1:ENST00000641496.1:ENST00000641013.1:ENST00000641262.1:ENST00000641174.1:ENST00000642102.1:ENST00000641615.1:ENST00000641487.1:ENST00000641321.1:ENST00000641719.1:ENST00000642010.1:ENST00000641578.1:ENST00000641510.1:ENST00000641604.1:ENST00000641056.1:ENST00000641642.1:ENST00000641362.1:ENST00000641365.1:ENST00000642077.1:ENST00000641179.1:ENST00000642126.1:ENST00000641411.1:ENST00000641357.1:ENST00000641746.2:ENST00000641073.1:ENST00000641298.1:ENST00000641001.1:ENST00000641674.2:ENST00000641828.1:ENST00000641029.1:ENST00000641547.1:ENST00000642134.1:ENST00000641696.1:ENST00000641480.1:ENST00000641187.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	1135	2	5.16324	6.1678049999999995	7.17237	3.93586e-4	2.7063e-7	0.0113656	4.42358e-5
chr10	80495281	80495380	4535532	0	+	0.484848	(0.45,0.485]	chr10	432713	56	INTRON	INTRON	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000481124.5:ENST00000372158.6:ENST00000372157.6:ENST00000469149.1:ENST00000372164.7:ENST00000341863.10:ENST00000372156.5:ENST00000616406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	111	2	6.11646	6.16728	6.2181	0.00956667	5.99406e-4	0.0658012	0.00993857
chr15	67050407	67050507	6307994	0	-	0.48	(0.45,0.485]	chr15	621983	481	INTRON	INTRON	ENSG00000259347	ENSG00000259347.8	ENST00000692307.1:ENST00000558071.2	lncRNA	lncRNA	lncRNA	lncRNA	0	126	2	5.51989	6.167275	6.81466	0.00357389	0.00274987	0.0342681	0.0332418
chr14	60898033	60898133	5834956	0	+	0.42	(0.419,0.45]	chr14	570749	178	INTRON	INTRON	MNAT1	ENSG00000020426.11	ENST00000261245.9:ENST00000539616.6:ENST00000554002.5:ENST00000557134.1	protein_coding	protein_coding	protein_coding	protein_coding	0	115	2	5.98805	6.16719	6.34633	0.00923958	0.00164584	0.0644666	0.0202325
chrX	41854226	41854326	8033615	0	-	0.42	(0.419,0.45]	chrX	838072	6	INTRON	INTRON	CASK	ENSG00000147044.23	ENST00000378163.7:ENST00000378168.8:ENST00000675354.1:ENST00000644347.1:ENST00000421587.8:ENST00000644219.1:ENST00000645566.1:ENST00000645986.2:ENST00000442742.7:ENST00000378158.6:ENST00000378154.3:ENST00000378166.9:ENST00000646120.2:ENST00000643831.2:ENST00000647118.2:ENST00000644770.1:ENST00000468986.7:ENST00000477823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	116	2	5.92632	6.167095	6.40787	0.00835435	0.00191339	0.0613588	0.0223437
chr10	18572157	18572257	4642450	0	-	0.4	(0.39,0.419]	chr10	443321	198	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	253	2	4.99872	6.166745	7.33477	0.00139992	2.04553e-4	0.0228907	0.00460754
chr7	29967113	29967212	3564625	0	-	0.363636	(0.36,0.39]	chr7	343990	114	INTRON	INTRON	SCRN1	ENSG00000136193.17	ENST00000426154.5:ENST00000242059.10:ENST00000425819.6:ENST00000409497.5:ENST00000434476.6:ENST00000421434.5:ENST00000494620.1:ENST00000438497.5:ENST00000409570.3:ENST00000631335.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	253	2	4.97616	6.166695000000001	7.35723	0.00130006	2.16718e-4	0.0220198	0.00477839
chr16	11075320	11075420	6386630	0	+	0.58	(0.523,0.58]	chr16	631735	139	INTRON	INTRON	CLEC16A	ENSG00000038532.16	ENST00000409790.6:ENST00000409552.4:ENST00000465491.5:ENST00000646363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	110	2	6.12478	6.16659	6.2084	0.00829271	4.95211e-4	0.0610772	0.00865935
chr4	37841147	37841244	2027784	0	+	0.42268	(0.419,0.45]	chr4	207056	5	INTRON	INTRON	PGM2	ENSG00000169299.14	ENST00000381967.9:ENST00000515668.5:ENST00000505986.5:ENST00000512556.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	113	2	6.07002	6.1661850000000005	6.26235	0.0143746	8.27298e-4	0.0821732	0.0124589
chr19	19074806	19074906	7225617	0	+	0.5	(0.485,0.523]	chr19	739606	103	INTRON	INTRON	SLC25A42	ENSG00000181035.14	ENST00000318596.8:ENST00000597661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	111	2	5.88115	6.1661	6.45105	0.012541	2.61322e-4	0.0761905	0.00551565
chr5	179753125	179753225	2605012	0	+	0.38	(0.36,0.39]	chr5	258990	193	INTRON	INTRON	MAML1	ENSG00000161021.13	ENST00000292599.4	protein_coding	protein_coding	protein_coding	protein_coding	0	122	2	5.65802	6.16599	6.67396	0.00448681	0.003279	0.0436138	0.0322062
chr22	39420728	39420827	7725737	0	+	0.494949	(0.485,0.523]	chr22	809455	7	INTRON	INTRON	TAB1	ENSG00000100324.14	ENST00000216160.11:ENST00000331454.3	protein_coding	protein_coding	protein_coding	protein_coding	0	110	2	6.07443	6.16598	6.25753	0.00899749	4.52177e-4	0.0637469	0.00816702
chr3	51665598	51665697	1472196	0	+	0.50505	(0.485,0.523]	chr3	157989	23	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	0	110	2	6.07443	6.16598	6.25753	0.00899749	4.52177e-4	0.0637469	0.00816702
chr10	77793228	77793321	4718252	0	-	0.483871	(0.45,0.485]	chr10	450099	3	INTRON	INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7:ENST00000475613.6:ENST00000424842.5:ENST00000463362.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	112	2	6.0506	6.1659500000000005	6.2813	0.00719875	9.38528e-4	0.056408	0.0135546
chr22	42986435	42986534	7823997	0	-	0.616162	(0.58,1]	chr22	820626	267	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	106	2	6.06599	6.1657150000000005	6.26544	0.00477081	2.06156e-4	0.0450109	0.00461335
chr15	64842428	64842528	6133214	0	+	0.53	(0.523,0.58]	chr15	603322	4	SS5_PROX	SS5_PROX:INTRON	PLEKHO2	ENSG00000241839.10	ENST00000616065.4:ENST00000323544.5	protein_coding	protein_coding	protein_coding	protein_coding	0	112	2	5.9758	6.165345	6.35489	0.00549977	9.36996e-4	0.0489559	0.0135546
chr13	33916702	33916802	5567616	0	+	0.31	(0.29,0.33]	chr13	549341	660	INTRON	INTRON	RFC3	ENSG00000133119.13	ENST00000434425.5:ENST00000616236.1	protein_coding	protein_coding	protein_coding	protein_coding	0	110	2	6.00161	6.16469	6.32777	0.00923185	3.99124e-4	0.0644666	0.00744627
chr13	75298731	75298829	5726149	0	-	0.438776	(0.419,0.45]	chr13	561597	34	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000648194.1:ENST00000377625.6:ENST00000431480.6:ENST00000478591.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	117	2	5.86184	6.16436	6.46688	0.00757951	0.00223565	0.0579104	0.024843
chr19	48908566	48908665	7280431	0	+	0.616162	(0.58,1]	chr19	748048	23	INTRON	INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000424608.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	267	2	5.00551	6.16381	7.32211	7.04076e-4	6.27279e-6	0.0156243	3.69646e-4
chr15	51297841	51297941	6258773	0	-	0.49	(0.485,0.523]	chr15	616673	193	INTRON	INTRON	CYP19A1	ENSG00000137869.16	ENST00000396402.6:ENST00000396404.8:ENST00000439712.6:ENST00000557934.5:ENST00000561075.5:ENST00000558328.5:ENST00000453807.6:ENST00000557858.5:ENST00000559980.5:ENST00000405011.6:ENST00000559646.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	0	138	2	5.25048	6.16356	7.07664	0.0059614	0.00139256	0.0479866	0.022808
chr16	78783748	78783848	6502256	0	+	0.45	(0.419,0.45]	chr16	645717	34	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	124	2	5.44447	6.163365	6.88226	0.0364384	1.58518e-4	0.128173	0.00384084
chr2	19997754	19997853	1096405	0	-	0.444444	(0.419,0.45]	chr2	119554	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MATN3	ENSG00000132031.13	ENST00000407540.8:ENST00000421259.2:ENST00000478482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	343	2	4.62733	6.163265	7.6992	8.67988e-4	1.757e-4	0.0175702	0.00411837
chr11	68351709	68351808	4882475	0	+	0.525253	(0.523,0.58]	chr11	470548	31	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	117	2	5.73609	6.1629950000000004	6.5899	0.00356891	0.0017613	0.0383188	0.0211077
chr16	85590728	85590828	6518980	0	+	0.67	(0.58,1]	chr16	646396	340	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	2	565	2	6.14987	6.1626449999999995	6.17542	4.41404e-5	1.34939e-6	0.00367351	1.27965e-4
chr16	11788926	11789026	6549952	0	-	0.38	(0.36,0.39]	chr16	652048	60	INTRON	INTRON	ZC3H7A	ENSG00000122299.12	ENST00000355758.9:ENST00000571198.5:ENST00000575170.1:ENST00000576018.5:ENST00000572781.5:ENST00000574995.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	112	2	6.05361	6.1625049999999995	6.2714	0.0127951	7.13729e-4	0.0769416	0.0112151
chr6	601519	601619	3078175	0	-	0.52	(0.485,0.523]	chr6	299385	19	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	0	111	2	5.8513	6.162405	6.47351	0.0131886	2.44978e-4	0.0785398	0.00523316
chr4	39867701	39867795	2218027	0	-	0.414894	(0.39,0.419]	chr4	224111	3	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000507020.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	310	2	4.88591	6.162305	7.4387	0.00235315	2.75778e-5	0.0305889	0.00106056
chr18	13590138	13590237	7026494	0	+	0.545455	(0.523,0.58]	chr18	717646	43	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000677744.1:ENST00000593236.1:ENST00000678400.1:ENST00000586207.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	115	2	5.80873	6.162235	6.51574	0.00409625	0.00145893	0.0413652	0.0184991
chr1	44802345	44802432	114931	0	+	0.517241	(0.485,0.523]	chr1	14241	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PLK3	ENSG00000173846.13	ENST00000372201.5:ENST00000465443.5:ENST00000476731.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	110	2	6.15007	6.162165	6.17426	0.00754939	6.0909e-4	0.0578091	0.0100377
chr7	76999410	76999510	3398794	0	+	0.71	(0.58,1]	chr7	328286	87	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	125	2	5.41094	6.1621500000000005	6.91336	0.00240622	7.98131e-4	0.0261006	0.0167692
chr15	28217591	28217690	6207147	0	-	0.393939	(0.39,0.419]	chr15	611111	14	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	0	112	2	6.07786	6.161745	6.24563	0.012565	7.69256e-4	0.0761905	0.0118331
chr17	76121244	76121327	6975093	0	-	0.506024	(0.485,0.523]	chr17	711995	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EXOC7	ENSG00000182473.22	ENST00000589507.6	protein_coding	protein_coding	protein_coding	protein_coding	0	116	2	5.76929	6.16151	6.55373	0.00378829	0.00167976	0.0396337	0.0203806
chr21	6121813	6121911	7589005	0	+	0.571429	(0.523,0.58]	chr21	793510	4	UTR3	UTR3:EXON_MRNA	ENSG00000275993	ENSG00000275993.3	ENST00000613488.3	protein_coding	protein_coding	protein_coding	protein_coding	0	122	2	5.5788	6.16141	6.74402	0.00267018	0.00262418	0.0327654	0.0278348
chr5	180809829	180809875	2823313	0	-	0.565217	(0.523,0.58]	chr5	277055	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	MGAT1	ENSG00000131446.17	ENST00000333055.8:ENST00000393340.7:ENST00000506889.1:ENST00000514438.1:ENST00000513431.5:ENST00000504385.5:ENST00000514760.1:ENST00000512080.1:ENST00000510341.1:ENST00000508702.1:ENST00000513149.1:ENST00000508090.1:ENST00000510962.1:ENST00000506708.1:ENST00000506033.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	122	2	5.5788	6.16141	6.74402	0.00267018	0.00262418	0.0327654	0.0278348
chr13	113588743	113588843	5658887	0	+	0.53	(0.523,0.58]	chr13	555775	25	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	114	2	5.65749	6.16122	6.66495	0.0182707	1.32802e-4	0.0921579	0.00337193
chr3	194449036	194449136	1979352	0	-	0.46	(0.45,0.485]	chr3	201394	4	SS3_PROX	SS3_PROX:INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000645621.1:ENST00000642744.2:ENST00000439040.6:ENST00000485194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	122	2	5.60298	6.161155	6.71933	0.00328012	0.00292492	0.0367219	0.029882
chr18	80186535	80186635	7183145	0	-	0.59	(0.58,1]	chr18	730364	30	INTRON	INTRON	PARD6G	ENSG00000178184.16	ENST00000353265.8:ENST00000470488.2:ENST00000463384.1	protein_coding	protein_coding	protein_coding	protein_coding	1	221	2	5.2139	6.161065	7.10823	5.16402e-4	3.67936e-5	0.0132022	0.00131168
chr2	138433174	138433274	1277800	0	-	0.46	(0.45,0.485]	chr2	137676	143	INTRON	INTRON	SPOPL-DT	ENSG00000228043.5	ENST00000431985.5	lncRNA	lncRNA	lncRNA	lncRNA	0	111	2	5.93034	6.161035	6.39173	0.0130794	3.72107e-4	0.0782396	0.00707906
chr13	112818304	112818404	5653830	0	+	0.61	(0.58,1]	chr13	554938	17	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000459908.5:ENST00000418678.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	549	2	5.68885	6.160915	6.63298	1.42677e-4	2.27463e-7	0.00666284	3.97035e-5
chr10	79219073	79219173	4533552	0	+	0.53	(0.523,0.58]	chr10	432457	24	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	239	2	5.01914	6.16087	7.3026	8.98889e-4	1.23884e-4	0.0178386	0.00321822
chr6	16620115	16620215	3103040	0	-	0.37	(0.36,0.39]	chr6	300871	36	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6:ENST00000495178.1:ENST00000646259.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	112	2	6.00099	6.160755	6.32052	0.0139273	6.27541e-4	0.0805916	0.0102323
chr18	39467408	39467508	7149071	0	-	0.38	(0.36,0.39]	chr18	727068	315	INTRON	INTRON	MIR924HG	ENSG00000267374.3	ENST00000670992.1:ENST00000591629.2:ENST00000662708.1:ENST00000663592.1:ENST00000665749.1:ENST00000668737.1:ENST00000669590.1:ENST00000667816.1:ENST00000666361.1:ENST00000671441.1:ENST00000668052.1:ENST00000669399.1:ENST00000666611.1:ENST00000667009.1:ENST00000666148.1:ENST00000667500.1:ENST00000658829.1:ENST00000665844.1:ENST00000670388.1:ENST00000653594.1:ENST00000660099.1:ENST00000655721.1:ENST00000655349.1:ENST00000665416.1:ENST00000655720.1:ENST00000663128.1:ENST00000668391.1:ENST00000652839.1:ENST00000654975.1:ENST00000667895.1:ENST00000670943.1:ENST00000670383.1:ENST00000652860.1:ENST00000664919.1:ENST00000660405.1:ENST00000667722.1:ENST00000653742.1:ENST00000666181.1:ENST00000654966.1:ENST00000658177.1:ENST00000670121.1:ENST00000669520.1	lncRNA	lncRNA	lncRNA	lncRNA	0	112	2	6.15342	6.160629999999999	6.16784	0.0108737	9.334e-4	0.0707085	0.0135546
chr5	53963791	53963891	2654924	0	-	0.38	(0.36,0.39]	chr5	263511	118	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	115	2	5.90345	6.160275	6.4171	0.00699528	0.00181603	0.0555241	0.0215865
chr3	129394389	129394484	1911561	0	-	0.515789	(0.485,0.523]	chr3	194158	2	INTRON	INTRON	RPL32P3	ENSG00000251474.7	ENST00000510078.5:ENST00000507287.5:ENST00000687239.1:ENST00000514355.5:ENST00000507238.5:ENST00000515866.5:ENST00000499631.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	110	2	6.12191	6.16004	6.19817	0.00723584	6.58016e-4	0.0565323	0.0106077
chr10	103810950	103811050	4758214	0	-	0.53	(0.523,0.58]	chr10	454819	92	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	0	119	2	5.65959	6.160015	6.66044	0.00312705	0.0021416	0.0356998	0.0240825
chr19	40055847	40055933	7379007	0	-	0.616279	(0.58,1]	chr19	765547	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF780B	ENSG00000128000.17	ENST00000434248.6:ENST00000221355.10:ENST00000598845.5:ENST00000594811.1:ENST00000593605.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	106	2	5.92528	6.159585	6.39389	0.0062948	1.38027e-4	0.0523832	0.00347229
chr22	19910082	19910181	7765145	0	-	0.616162	(0.58,1]	chr22	813988	107	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	106	2	6.12444	6.15932	6.1942	0.00368616	3.17437e-4	0.0389784	0.00632787
chr10	132688591	132688691	4618350	0	+	0.53	(0.523,0.58]	chr10	441157	377	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	0	110	2	5.90997	6.15931	6.40865	0.012016	2.80789e-4	0.0743424	0.00578259
chr17	38726997	38727096	6729353	0	+	0.565657	(0.523,0.58]	chr17	676371	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5:ENST00000619356.1:ENST00000615741.1:ENST00000615441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	383	2	4.55685	6.159195	7.76154	3.54552e-4	5.96549e-5	0.0107472	0.00186431
chr3	194417404	194417503	1979012	0	-	0.444444	(0.419,0.45]	chr3	201300	19	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2:ENST00000690810.1:ENST00000429136.7:ENST00000645621.1:ENST00000461660.2:ENST00000685123.1:ENST00000642744.2:ENST00000439040.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	266	2	4.64385	6.15911	7.67437	9.08571e-4	5.96394e-4	0.0180048	0.00990739
chr3	51982700	51982800	1776916	0	-	0.46	(0.45,0.485]	chr3	184697	1	SS5_PROX	SS5_PROX:INTRON	ABHD14B	ENSG00000114779.20	ENST00000483233.5	protein_coding	protein_coding	protein_coding	protein_coding	0	116	2	5.79191	6.1591000000000005	6.52629	0.00466172	0.00183113	0.044542	0.0216571
chr5	37032293	37032392	2402348	0	+	0.383838	(0.36,0.39]	chr5	240003	45	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	0	112	2	6.14074	6.159035	6.17733	0.0104543	0.0010006	0.0688771	0.0142243
chr1	45486753	45486853	467174	0	-	0.45	(0.419,0.45]	chr1	55816	285	INTRON	INTRON	TESK2	ENSG00000070759.17	ENST00000372086.4:ENST00000486676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	118	2	5.79433	6.158955000000001	6.52358	0.00689831	0.00262626	0.0553728	0.0278348
chr20	58695490	58695590	7498638	0	+	0.63	(0.58,1]	chr20	782002	5	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	112	2	5.55681	6.15882	6.76083	0.0126042	4.22142e-5	0.0761905	0.0014546
chr10	75498393	75498493	4521142	0	+	0.58	(0.523,0.58]	chr10	432249	468	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	1	238	2	5.0708	6.15859	7.24638	0.00100536	1.05737e-4	0.0190855	0.00286061
chr12	132535257	132535356	5352968	0	+	0.555556	(0.523,0.58]	chr12	523670	69	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	113	2	5.69157	6.15842	6.62527	0.0172851	1.49357e-4	0.0897247	0.00367368
chr19	48903946	48904046	7280383	0	+	0.52	(0.485,0.523]	chr19	748037	2	SS3_PROX	SS3_PROX:INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000443560.1:ENST00000411700.5:ENST00000451312.5:ENST00000424608.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	112	2	5.94031	6.15837	6.37643	0.0052506	0.00107389	0.0476984	0.0148869
chr16	1459687	1459763	6532769	0	-	0.671053	(0.58,1]	chr16	648974	1	INTRON	INTRON	CLCN7	ENSG00000103249.18	ENST00000382745.9:ENST00000448525.5:ENST00000262318.12:ENST00000569851.6	protein_coding	protein_coding	protein_coding	protein_coding	0	111	2	5.59447	6.158335	6.7222	0.0117666	4.79419e-5	0.0737098	0.00159846
chr19	37218829	37218915	7252061	0	+	0.465116	(0.45,0.485]	chr19	743297	1	SS3_PROX	SS3_PROX:INTRON	ZNF383	ENSG00000188283.12	ENST00000586068.5:ENST00000585441.5:ENST00000586658.1:ENST00000590503.5:ENST00000684119.1:ENST00000589413.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	111	2	5.90167	6.15829	6.41491	0.0137135	0.00034885200000000003	0.0799457	0.00674746
chr9	133853890	133853990	4428937	0	-	0.55	(0.523,0.58]	chr9	423304	192	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	2	324	2	4.44663	6.158165	7.8697	2.83668e-4	1.75385e-4	0.00957277	0.00411241
chr19	45624318	45624418	7388939	0	-	0.41	(0.39,0.419]	chr19	767279	2	SS5_PROX	SS5_PROX:INTRON	EML2	ENSG00000125746.18	ENST00000589876.5:ENST00000587152.6:ENST00000245925.8:ENST00000586195.5:ENST00000588308.5:ENST00000536630.5:ENST00000590819.5:ENST00000399594.7:ENST00000590575.5:ENST00000588272.1:ENST00000588000.5:ENST00000588610.5:ENST00000588496.5:ENST00000586902.5:ENST00000590580.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	112	2	6.14017	6.15807	6.17597	0.0107103	0.00100955	0.0701493	0.0142887
chr3	24482622	24482722	1716354	0	-	0.49	(0.485,0.523]	chr3	178018	233	INTRON	INTRON	THRB	ENSG00000151090.20	ENST00000646209.2:ENST00000396671.7:ENST00000356447.9:ENST00000646432.1:ENST00000643772.1:ENST00000645139.1:ENST00000642307.1:ENST00000644321.1:ENST00000646966.1:ENST00000416420.5:ENST00000413780.5:ENST00000447875.5:ENST00000453729.6:ENST00000431815.5:ENST00000447414.5:ENST00000428492.5:ENST00000418247.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	110	2	5.9104	6.157725	6.40505	0.0119344	2.98099e-4	0.0741726	0.00604717
chr9	137569730	137569829	4435761	0	-	0.50505	(0.485,0.523]	chr9	424466	42	INTRON	INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000475100.5:ENST00000472113.5:ENST00000485189.5:ENST00000467768.5:ENST00000477690.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	110	2	5.9104	6.157725	6.40505	0.0119344	2.98099e-4	0.0741726	0.00604717
chr6	7396872	7396972	2839612	0	+	0.31	(0.29,0.33]	chr6	278022	1	SS5_PROX	SS5_PROX:INTRON	RIOK1	ENSG00000124784.9	ENST00000475351.5:ENST00000379834.7:ENST00000264874.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	113	2	5.69884	6.15754	6.61624	0.0155382	1.75397e-4	0.0849828	0.00411241
chr2	9457127	9457227	715449	0	+	0.37	(0.36,0.39]	chr2	83611	1	SS5_PROX	SS5_PROX:INTRON	CPSF3	ENSG00000119203.14	ENST00000238112.8:ENST00000460593.1:ENST00000489403.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	112	2	5.9463800000000004	6.1572	6.36802	0.0151971	5.53634e-4	0.084474	0.00941672
chr10	7723150	7723250	4442148	0	+	0.62	(0.58,1]	chr10	425525	3	SS3_PROX	SS3_PROX:INTRON	ITIH2	ENSG00000151655.19	ENST00000358415.9:ENST00000379587.4	protein_coding	protein_coding	protein_coding	protein_coding	2	593	2	5.21098	6.156925	7.10287	4.39e-4	3.89555e-8	0.012033	1.27037e-5
chr14	75656272	75656371	6010103	0	-	0.464646	(0.45,0.485]	chr14	590068	9	INTRON	INTRON	ERG28	ENSG00000133935.7	ENST00000256319.7	protein_coding	protein_coding	protein_coding	protein_coding	0	123	2	5.56203	6.1569199999999995	6.75181	0.00322991	0.00308946	0.0354967	0.0319521
chr7	92614742	92614841	3636738	0	-	0.494949	(0.485,0.523]	chr7	350278	100	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000467166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	1369	2	6.09892	6.156885	6.21485	5.17973e-5	2.5594e-7	0.00399449	4.26008e-5
chr3	128494815	128494914	1563244	0	+	0.434343	(0.419,0.45]	chr3	165331	44	INTRON	INTRON	GATA2-AS1	ENSG00000244300.3	ENST00000464242.1:ENST00000468377.1:ENST00000669945.1	lncRNA	lncRNA	lncRNA	lncRNA	0	128	2	5.32195	6.156865	6.99178	0.0431627	1.16955e-4	0.138403	0.00308693
chr21	43726952	43727051	7623863	0	+	0.606061	(0.58,1]	chr21	796696	32	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000438837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	557	2	6.10417	6.156775	6.20938	5.24929e-5	1.08604e-6	0.0040205	1.10076e-4
chr17	77214314	77214411	6803117	0	+	0.412371	(0.39,0.419]	chr17	686684	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000585618.5:ENST00000436233.9:ENST00000443798.8:ENST00000591437.5:ENST00000588488.1:ENST00000587491.5:ENST00000588721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	251	2	5.15951	6.15674	7.15397	0.00195243	1.29063e-4	0.0276541	0.0033047
chr11	68264266	68264366	5057262	0	-	0.52	(0.485,0.523]	chr11	492360	4	SS3_PROX	SS3_PROX:INTRON	C11orf24	ENSG00000171067.11	ENST00000304271.11:ENST00000533310.5:ENST00000530166.5:ENST00000527280.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	327	2	5.41757	6.156595	6.89562	5.75406e-4	7.04028e-5	0.0140461	0.00211367
chr19	3529994	3530093	7191598	0	+	0.616162	(0.58,1]	chr19	732249	18	INTRON	INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	107	2	6.00079	6.15636	6.31193	0.00289626	4.59827e-4	0.03418	0.00821903
chr17	643394	643494	6823610	0	-	0.41	(0.39,0.419]	chr17	689804	102	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000680944.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000681830.1:ENST00000679959.1:ENST00000680114.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000570650.2:ENST00000679680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	112	2	5.94502	6.156235000000001	6.36745	0.0155393	5.58995e-4	0.0849828	0.00944382
chr21	42849682	42849773	7675469	0	-	0.593407	(0.58,1]	chr21	802288	6	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	278	2	4.2488	6.156005	8.06321	0.0037252	4.43164e-7	0.0392361	6.14597e-5
chr7	132990959	132991059	3714941	0	-	0.41	(0.39,0.419]	chr7	356873	153	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	116	2	5.83691	6.15583	6.47475	0.00649594	0.00215135	0.0532359	0.0241566
chr3	71173445	71173545	1827159	0	-	0.36	(0.33,0.36]	chr3	188150	414	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648426.1:ENST00000498215.7:ENST00000484350.5:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000468577.6:ENST00000649513.1:ENST00000649431.2:ENST00000647614.1:ENST00000649760.1:ENST00000650295.1:ENST00000648895.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	114	2	5.71439	6.1548099999999994	6.59523	0.0191308	2.55497e-4	0.0952349	0.00541562
chr5	134780150	134780246	2538520	0	+	0.28125	[0,0.29]	chr5	251865	21	INTRON	INTRON	DDX46	ENSG00000145833.16	ENST00000628477.2:ENST00000452510.7:ENST00000507392.5:ENST00000354283.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	107	2	6.03221	6.15477	6.27733	0.00561175	3.30957e-4	0.0493906	0.00650092
chr9	124525173	124525273	4402888	0	-	0.37	(0.36,0.39]	chr9	419851	3	SS3_PROX	SS3_PROX:INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	0	112	2	5.91828	6.15474	6.3912	0.0158902	5.20645e-4	0.0859576	0.00899129
chr2	168461017	168461116	944226	0	+	0.484848	(0.45,0.485]	chr2	103959	40	INTRON	INTRON	CERS6	ENSG00000172292.15	ENST00000392687.4:ENST00000305747.11	protein_coding	protein_coding	protein_coding	protein_coding	0	111	2	6.0506	6.1547350000000005	6.25887	0.00748565	9.38528e-4	0.0576451	0.0135546
chr6	170396975	170397075	3076549	0	+	0.53	(0.523,0.58]	chr6	299192	10	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	0	115	2	5.5868	6.154645	6.72249	0.020474	1.11891e-4	0.0979776	0.00298349
chr7	241503	241603	3306070	0	+	0.54	(0.523,0.58]	chr7	320161	322	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	289	2	4.81788	6.15456	7.49124	0.00195151	1.0301e-5	0.0276541	5.2504e-4
chr1	43965565	43965658	110817	0	+	0.537634	(0.523,0.58]	chr1	13723	9	INTRON	INTRON	IPO13	ENSG00000117408.11	ENST00000372343.8	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	6.04792	6.154525	6.26113	0.00948306	4.27166e-4	0.0656057	0.00779962
chr13	112553058	112553157	5752450	0	-	0.575758	(0.523,0.58]	chr13	563939	45	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000464139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	109	2	6.074	6.1545000000000005	6.235	0.00906277	4.59688e-4	0.0637469	0.00821903
chr1	246234423	246234523	703129	0	-	0.41	(0.39,0.419]	chr1	82422	408	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	113	2	5.82918	6.1544799999999995	6.47978	0.0186329	4.14458e-4	0.0932878	0.00767522
chr18	48603137	48603237	7057296	0	+	0.53	(0.523,0.58]	chr18	720287	624	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	6.02137	6.15408	6.28679	0.00992924	3.97355e-4	0.0671959	0.00741985
chr17	15454383	15454483	6859978	0	-	0.47	(0.45,0.485]	chr17	695067	9	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	110	2	6.01306	6.154075000000001	6.29509	0.0113949	4.85904e-4	0.0723462	0.00857996
chr6	147812325	147812425	3030292	0	+	0.47	(0.45,0.485]	chr6	295875	749	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	0	110	2	6.01306	6.154075000000001	6.29509	0.0113949	4.85904e-4	0.0723462	0.00857996
chr19	8249429	8249528	7200378	0	+	0.555556	(0.523,0.58]	chr19	734198	76	INTRON	INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	112	2	5.91127	6.15404	6.39681	0.00509616	0.00111349	0.0467496	0.0152496
chr15	82483716	82483816	6340041	0	-	0.45	(0.419,0.45]	chr15	625050	54	INTRON	INTRON	GOLGA2P10	ENSG00000255769.7	ENST00000618004.4:ENST00000614347.4:ENST00000618267.4:ENST00000612379.4:ENST00000619738.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	126	2	5.52959	6.153695	6.7778	0.00484244	0.00448826	0.0436138	0.0418176
chr7	47353427	47353526	3587325	0	-	0.323232	(0.29,0.33]	chr7	346030	67	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	6.05523	6.15368	6.25213	0.00839544	4.92548e-4	0.0616149	0.00865377
chr16	27213184	27213284	6427416	0	+	0.45	(0.419,0.45]	chr16	635985	2	SS3_PROX	SS3_PROX:INTRON	KDM8	ENSG00000155666.12	ENST00000562269.1:ENST00000286096.9:ENST00000441782.6:ENST00000568965.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	112	2	6.07002	6.15359	6.23716	0.0143746	8.82327e-4	0.0821732	0.0129974
chr20	50538474	50538574	7493762	0	+	0.45	(0.419,0.45]	chr20	781416	275	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	0	112	2	6.07002	6.15359	6.23716	0.0143746	8.82327e-4	0.0821732	0.0129974
chr19	12602088	12602187	7336492	0	-	0.414141	(0.39,0.419]	chr19	759029	49	INTRON	INTRON	ZNF490	ENSG00000188033.10	ENST00000311437.11:ENST00000414906.5:ENST00000465656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	112	2	6.08441	6.15352	6.22263	0.00991891	0.00116356	0.0671959	0.0157899
chr21	45453822	45453922	7630801	0	+	0.59	(0.58,1]	chr21	797656	480	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	106	2	6.06394	6.153195	6.24245	0.00334087	3.80904e-4	0.0368376	0.00721291
chr2	10190104	10190204	718202	0	+	0.49	(0.485,0.523]	chr2	84002	340	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	111	2	5.97221	6.15305	6.33389	0.00567224	9.86421e-4	0.0496143	0.0140716
chr17	77351298	77351398	6803872	0	+	0.51	(0.485,0.523]	chr17	686742	271	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	109	2	6.07443	6.152915	6.2314	0.00899749	4.86354e-4	0.0637469	0.00857996
chr20	8492838	8492938	7430196	0	+	0.26	[0,0.29]	chr20	773698	1208	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	108	2	6.02317	6.1527899999999995	6.28241	0.00341772	6.82173e-4	0.0374749	0.0108717
chr1	205204380	205204480	647769	0	-	0.44	(0.419,0.45]	chr1	76772	162	INTRON	INTRON	DSTYK	ENSG00000133059.17	ENST00000367162.8:ENST00000367161.7	protein_coding	protein_coding	protein_coding	protein_coding	0	112	2	6.01834	6.15273	6.28712	0.015582500000000001	7.76382e-4	0.0849828	0.0118807
chr19	5288132	5288232	7316489	0	-	0.49	(0.485,0.523]	chr19	755347	15	INTRON	INTRON	PTPRS	ENSG00000105426.18	ENST00000588552.5:ENST00000262963.11:ENST00000591760.5:ENST00000586065.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	109	2	6.0218	6.152495	6.28319	0.00985907	4.20832e-4	0.0670775	0.00773187
chr10	15149241	15149341	4636633	0	-	0.5	(0.485,0.523]	chr10	443033	73	INTRON	INTRON	NMT2	ENSG00000152465.18	ENST00000378165.9:ENST00000378150.1	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	6.10004	6.152419999999999	6.2048	0.00860355	5.23665e-4	0.0623467	0.0090184
chr8	133290119	133290218	4084226	0	-	0.59596	(0.58,1]	chr8	388356	13	INTRON	INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1:ENST00000674839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	185	2	4.58025	6.15217	7.72409	0.0172566	1.247e-4	0.0923809	0.00618972
chr11	43706701	43706801	4846367	0	+	0.48	(0.45,0.485]	chr11	463519	250	INTRON	INTRON	ENSG00000283341:HSD17B12	ENSG00000283341.3:ENSG00000149084.13	ENST00000532864.6:ENST00000529261.5:ENST00000527433.6:ENST00000531185.5:ENST00000278353.10:ENST00000636007.1:ENST00000395700.4:ENST00000637401.1:ENST00000636722.1:ENST00000638034.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	2	329	2	4.44233	6.151815	7.8613	3.60602e-4	2.1034e-4	0.0108631	0.00468886
chr7	105247413	105247513	3666566	0	-	0.39	(0.36,0.39]	chr7	353719	405	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	112	2	5.88962	6.151815	6.41401	0.0166261	4.90006e-4	0.0884836	0.00861813
chr1	1029229	1029329	1007	0	+	0.59	(0.58,1]	chr1	166	64	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	105	2	6.09256	6.151619999999999	6.21068	0.00452436	2.44053e-4	0.0436138	0.00522003
chr4	1315900	1316000	1995194	0	+	0.64	(0.58,1]	chr4	203251	3	SS5_PROX	SS5_PROX:INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000513301.5:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000512842.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	105	2	6.09256	6.151619999999999	6.21068	0.00452436	2.44053e-4	0.0436138	0.00522003
chr7	111320185	111320285	3685266	0	-	0.44	(0.419,0.45]	chr7	354615	3563	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	112	2	6.14421	6.151505	6.1588	0.0127879	0.00107628	0.0769397	0.0148869
chr6	5476497	5476597	2834539	0	+	0.38	(0.36,0.39]	chr6	277876	448	INTRON	INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000648580.1:ENST00000274680.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	117	2	5.6023	6.15137	6.70044	0.0258522	2.25359e-4	0.109555	0.00492301
chr5	882058	882155	2608196	0	-	0.546392	(0.523,0.58]	chr5	259472	10	EXON_MRNA	EXON_MRNA:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	239	2	5.34704	6.1511	6.95516	0.00178078	4.47356e-5	0.0262315	0.00151628
chr2	239348081	239348181	1392191	0	-	0.54	(0.523,0.58]	chr2	148752	236	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	288	2	4.79971	6.150975	7.50224	0.00202295	9.94429e-6	0.0283135	5.11988e-4
chr4	1176375	1176474	2179440	0	-	0.353535	(0.33,0.36]	chr4	220858	33	INTRON	INTRON	SPON2	ENSG00000159674.12	ENST00000617421.4:ENST00000515004.5:ENST00000502483.5:ENST00000509233.5:ENST00000511679.5:ENST00000511672.5:ENST00000506266.1:ENST00000504871.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	304	2	6.06801	6.15094	6.23387	0.00810355	7.10218e-6	0.0602166	4.04994e-4
chr7	5055212	5055311	3311237	0	+	0.444444	(0.419,0.45]	chr7	320985	68	INTRON	INTRON	RBAK	ENSG00000146587.18	ENST00000353796.7:ENST00000396912.2	protein_coding	protein_coding	protein_coding	protein_coding	0	119	2	5.72351	6.1508199999999995	6.57813	0.00629696	0.00310292	0.0523832	0.0311614
chr18	13445925	13446022	7025035	0	+	0.350515	(0.33,0.36]	chr18	717583	17	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000610087.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	119	2	5.66858	6.150565	6.63255	0.0040075	0.0028562	0.0410079	0.0294256
chr19	324334	324434	7303119	0	-	0.47	(0.45,0.485]	chr19	752407	103	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	116	2	5.75605	6.1505	6.54495	0.00450754	0.002004	0.0436138	0.0230381
chr7	92665243	92665342	3637249	0	-	0.434343	(0.419,0.45]	chr7	350304	231	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	1	309	2	4.56156	6.150399999999999	7.73924	0.00473235	1.35996e-5	0.0449264	6.39223e-4
chr3	105496733	105496833	1526763	0	+	0.35	(0.33,0.36]	chr3	162334	555	INTRON	INTRON	ALCAM	ENSG00000170017.12	ENST00000306107.9:ENST00000470756.5:ENST00000472644.6:ENST00000481337.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	113	2	5.91404	6.15015	6.38626	0.00621741	0.00156051	0.052147	0.0194067
chr19	55270934	55271032	7407627	0	-	0.540816	(0.523,0.58]	chr19	771326	43	INTRON	INTRON	HSPBP1	ENSG00000133265.11	ENST00000433386.7:ENST00000255631.9:ENST00000587922.5:ENST00000585927.1:ENST00000587959.1	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	5.93864	6.14989	6.36114	0.0114442	3.21725e-4	0.0723462	0.0063695
chrX	131817994	131818094	8109979	0	-	0.38	(0.36,0.39]	chrX	845349	3	SS5_PROX	SS5_PROX:INTRON	FIRRE	ENSG00000213468.7	ENST00000649541.1:ENST00000663405.1:ENST00000665076.1:ENST00000654978.1:ENST00000647966.1:ENST00000427391.2:ENST00000668308.1:ENST00000658376.1:ENST00000650184.1:ENST00000653136.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	111	2	6.07922	6.149885	6.22055	0.0122748	8.14665e-4	0.0755611	0.0123172
chr16	22244229	22244329	6421289	0	+	0.28	[0,0.29]	chr16	635027	2	SS3_PROX	SS3_PROX:INTRON	EEF2K	ENSG00000103319.12	ENST00000263026.10:ENST00000568269.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	109	2	5.92742	6.14945	6.37148	0.00285225	8.88991e-4	0.0338759	0.0130852
chr16	53075	53175	6528724	0	-	0.61	(0.58,1]	chr16	648198	2	SS5_PROX	SS5_PROX:INTRON	POLR3K	ENSG00000161980.6	ENST00000293860.6	protein_coding	protein_coding	protein_coding	protein_coding	0	121	2	5.26138	6.14942	7.03746	0.021217	1.67087e-5	0.0996078	7.38685e-4
chr18	79357060	79357160	7099856	0	+	0.64	(0.58,1]	chr18	722963	85	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000426216.6:ENST00000307671.12:ENST00000490210.6:ENST00000590477.5:ENST00000589951.5:ENST00000588921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	269	2	5.1119	6.149345	7.18679	5.51806e-4	1.00244e-5	0.0136798	5.13591e-4
chr4	3362000	3362100	2005056	0	+	0.73	(0.58,1]	chr4	204663	186	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	105	2	5.95454	6.149205	6.34387	0.0059453	1.61506e-4	0.0506158	0.00387712
chr2	213302582	213302681	1011545	0	+	0.414141	(0.39,0.419]	chr2	111320	1	INTRON	INTRON	SPAG16	ENSG00000144451.20	ENST00000406979.6:ENST00000432529.6:ENST00000413312.5:ENST00000440779.5:ENST00000452556.5:ENST00000331683.10:ENST00000447990.1:ENST00000414961.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	251	2	5.24393	6.149115	7.0543	0.00234061	1.01072e-4	0.0305023	0.00276281
chr6	129524564	129524661	3258039	0	-	0.443299	(0.419,0.45]	chr6	315282	1	INTRON	INTRON	ENSG00000226149	ENSG00000226149.6	ENST00000665046.1:ENST00000664071.1:ENST00000657779.1:ENST00000659721.1:ENST00000668058.1:ENST00000670413.1	lncRNA	lncRNA	lncRNA	lncRNA	1	317	2	4.9478	6.148975	7.35015	0.00237287	4.23276e-5	0.0307332	0.00145731
chr19	4492235	4492335	7193758	0	+	0.45	(0.419,0.45]	chr19	732769	4	SS5_PROX	SS5_PROX:INTRON	HDGFL2	ENSG00000167674.15	ENST00000616600.5:ENST00000621835.4:ENST00000589486.5:ENST00000615225.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	112	2	6.1041	6.147869999999999	6.19164	0.0118587	0.00123471	0.0740271	0.0164614
chr13	112973142	112973241	5655352	0	+	0.59596	(0.58,1]	chr13	555120	33	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	121	2	5.45872	6.147785	6.83685	0.00211999	9.44859e-4	0.0239744	0.0183873
chr6	109448122	109448202	3228892	0	-	0.5625	(0.523,0.58]	chr6	312957	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MICAL1	ENSG00000135596.18	ENST00000358807.8:ENST00000358577.7:ENST00000456101.6:ENST00000630715.2:ENST00000465904.1:ENST00000433205.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	109	2	5.90997	6.14753	6.38509	0.012016	3.00426e-4	0.0743424	0.00607383
chr18	76403580	76403680	7179155	0	-	0.41	(0.39,0.419]	chr18	730080	229	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	111	2	6.12775	6.1475100000000005	6.16727	0.0115883	9.41833e-4	0.0731017	0.0135546
chr16	85388536	85388636	6516956	0	+	0.52	(0.485,0.523]	chr16	646391	292	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	142	2	5.14248	6.14726	7.15204	0.00761903	0.00120048	0.0561937	0.0210159
chr20	47532105	47532205	7488876	0	+	0.4	(0.39,0.419]	chr20	780647	297	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	1	249	2	5.04652	6.14686	7.2472	0.00164562	1.7851e-4	0.0250898	0.00417607
chr14	77751780	77751880	6014104	0	-	0.45	(0.419,0.45]	chr14	590691	3	SS3_PROX	SS3_PROX:INTRON	SNW1	ENSG00000100603.14	ENST00000261531.12:ENST00000554775.5:ENST00000556428.5:ENST00000555761.5:ENST00000554324.1:ENST00000557663.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	114	2	5.92632	6.146725	6.36713	0.00893106	0.00191339	0.0637469	0.0223437
chr13	113020744	113020844	5655832	0	+	0.41	(0.39,0.419]	chr13	555145	55	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	111	2	5.97258	6.146265	6.31995	0.0148746	6.3352e-4	0.0833515	0.0102998
chrY	14730954	14731054	8142748	0	+	0.41	(0.39,0.419]	chrY	848306	73	INTRON	INTRON	NLGN4Y	ENSG00000165246.15	ENST00000643089.1:ENST00000382872.5:ENST00000355905.6:ENST00000382868.5:ENST00000476359.1:ENST00000684976.1:ENST00000339174.9:ENST00000413217.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	111	2	6.14017	6.146115	6.15206	0.0111378	0.00100955	0.0715198	0.0142887
chr16	89292995	89293095	6659735	0	-	0.66	(0.58,1]	chr16	666648	8	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	292	2	4.88929	6.145519999999999	7.40175	2.64397e-4	2.28308e-5	0.00920003	9.26842e-4
chr19	5900343	5900441	7318274	0	-	0.438776	(0.419,0.45]	chr19	755741	30	INTRON	INTRON	NDUFA11	ENSG00000174886.14	ENST00000418389.6:ENST00000308961.5:ENST00000592634.5:ENST00000593233.1:ENST00000650663.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	112	2	6.07595	6.145365	6.21478	0.011428	0.00132452	0.0723462	0.0173138
chr10	79220073	79220173	4533562	0	+	0.64	(0.58,1]	chr10	432457	34	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	106	2	6.00079	6.144965	6.28914	0.00303562	4.59827e-4	0.0350226	0.00821903
chr19	58327414	58327514	7301070	0	+	0.6	(0.58,1]	chr19	752037	3	SS5_PROX	SS5_PROX:INTRON	ZSCAN22	ENSG00000182318.6	ENST00000329665.5	protein_coding	protein_coding	protein_coding	protein_coding	0	106	2	6.00079	6.144965	6.28914	0.00303562	4.59827e-4	0.0350226	0.00821903
chr13	112552858	112552958	5752448	0	-	0.64	(0.58,1]	chr13	563939	43	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000464139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	221	2	4.9757	6.144925	7.31415	3.2338e-4	8.18951e-5	0.0102338	0.00236018
chr1	1029727	1029826	1012	0	+	0.535354	(0.523,0.58]	chr1	166	69	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	2	622	2	5.93557	6.14463	6.35369	1.96504e-4	1.67812e-6	0.00789452	1.47325e-4
chr17	51106070	51106170	6929068	0	-	0.53	(0.523,0.58]	chr17	706046	260	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8	protein_coding	protein_coding	protein_coding	protein_coding	2	434	2	4.90087	6.1446000000000005	7.38833	6.66105e-4	1.43066e-5	0.015195	6.59187e-4
chr15	25435163	25435263	6205973	0	-	0.41	(0.39,0.419]	chr15	610832	77	INTRON	INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000625681.2:ENST00000627018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	111	2	5.94502	6.144455000000001	6.34389	0.0155393	5.94847e-4	0.0849828	0.0098913
chr10	79146969	79147069	4532826	0	+	0.54	(0.523,0.58]	chr10	432432	68	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	6.06747	6.14437	6.22127	0.00699217	7.30845e-4	0.0555241	0.0113963
chr17	6580859	6580958	6845192	0	-	0.555556	(0.523,0.58]	chr17	693145	6	INTRON	INTRON	KIAA0753	ENSG00000198920.11	ENST00000361413.8:ENST00000576281.5:ENST00000570790.5:ENST00000572370.5:ENST00000542826.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	110	2	5.78924	6.14424	6.49924	0.0147166	2.16101e-4	0.0826843	0.00477041
chr19	23324375	23324475	7358027	0	-	0.5	(0.485,0.523]	chr19	762771	139	INTRON	INTRON	ZNF91	ENSG00000167232.14	ENST00000596528.1:ENST00000596989.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	252	2	4.60039	6.144145	7.6879	4.46264e-4	4.07903e-4	0.0115728	0.00807719
chr6	154778842	154778941	3044568	0	+	0.282828	[0,0.29]	chr6	296638	4	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	109	2	5.72933	6.144025	6.55872	0.00996568	1.43929e-4	0.0673647	0.00357736
chr8	143322265	143322360	4095550	0	-	0.631579	(0.58,1]	chr8	389125	5	INTRON	INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	108	2	5.66698	6.14391	6.62084	0.0102927	6.67603e-5	0.0684871	0.00202861
chrY	7327430	7327526	8134480	0	+	0.416667	(0.39,0.419]	chrY	847775	9	INTRON	INTRON	PRKY	ENSG00000099725.14	ENST00000528056.5:ENST00000533551.5:ENST00000495163.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	0	122	2	5.41254	6.14348	6.87442	0.0347088	1.40171e-4	0.12648	0.00350296
chr2	239158656	239158755	1390283	0	-	0.717172	(0.58,1]	chr2	148698	15	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	108	2	5.86553	6.143155	6.42078	0.00230938	6.8352e-4	0.0302623	0.0108717
chr21	35744835	35744935	7664411	0	-	0.37	(0.36,0.39]	chr21	801112	896	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000475045.6	protein_coding	protein_coding	protein_coding	protein_coding	0	150	2	5.04893	6.143085	7.23724	0.0125348	0.00162449	0.0765738	0.0249683
chr4	3368880	3368980	2005125	0	+	0.63	(0.58,1]	chr4	204663	255	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	220	2	5.37273	6.143045	6.91336	7.98131e-4	2.13533e-5	0.0167692	8.80696e-4
chr1	8509272	8509369	392633	0	-	0.391753	(0.39,0.419]	chr1	45009	2	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000656437.1:ENST00000464972.5:ENST00000659924.1:ENST00000480342.5:ENST00000507012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	249	2	4.96181	6.14296	7.32411	0.00142783	2.27143e-4	0.0231443	0.00495554
chr12	116916809	116916908	5336064	0	+	0.545455	(0.523,0.58]	chr12	520812	51	INTRON	INTRON	FBXW8	ENSG00000174989.13	ENST00000652555.1:ENST00000455858.2	protein_coding	protein_coding	protein_coding	protein_coding	0	113	2	5.80873	6.14295	6.47717	0.00439843	0.00145893	0.0429852	0.0184991
chr5	14151566	14151666	2383432	0	+	0.33	(0.29,0.33]	chr5	238468	73	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000502816.1:ENST00000505971.5:ENST00000512070.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	113	2	5.62984	6.14288	6.65592	0.0174273	1.56274e-4	0.0901531	0.00379986
chr17	64106629	64106729	6946043	0	-	0.44	(0.419,0.45]	chr17	708627	80	INTRON	INTRON	ERN1	ENSG00000178607.17	ENST00000680433.1:ENST00000433197.4:ENST00000584041.1:ENST00000680493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	112	2	5.88044	6.142695	6.40495	0.0192645	5.72149e-4	0.0954446	0.00960229
chr9	109415072	109415171	4366899	0	-	0.424242	(0.419,0.45]	chr9	417093	43	INTRON	INTRON	PTPN3	ENSG00000070159.14	ENST00000262539.7:ENST00000412145.5:ENST00000446349.5:ENST00000374541.4	protein_coding	protein_coding	protein_coding	protein_coding	0	123	2	5.57051	6.142385	6.71426	0.0050028	0.00441471	0.0463896	0.0393688
chr2	111422209	111422309	1252858	0	-	0.44	(0.419,0.45]	chr2	134896	439	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1	lncRNA	lncRNA	lncRNA	lncRNA	0	114	2	5.72794	6.141595000000001	6.55525	0.0242188	3.84925e-4	0.106588	0.00726694
chr16	85456607	85456707	6517637	0	+	0.45	(0.419,0.45]	chr16	646391	973	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	5.75936	6.14147	6.52358	0.00689831	0.00285253	0.0553728	0.0294017
chr6	140710739	140710839	3278838	0	-	0.44	(0.419,0.45]	chr6	317145	469	INTRON	INTRON	ENSG00000234147	ENSG00000234147.3	ENST00000650553.2	lncRNA	lncRNA	lncRNA	lncRNA	0	117	2	5.75936	6.14147	6.52358	0.00689831	0.00285253	0.0553728	0.0294017
chr1	9294335	9294431	19597	0	+	0.552083	(0.523,0.58]	chr1	2201	9	INTRON	INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11	protein_coding	protein_coding	protein_coding	protein_coding	0	108	2	6.04792	6.14146	6.235	0.00948306	4.59688e-4	0.0656057	0.00821903
chr19	7087673	7087771	7197198	0	+	0.44898	(0.419,0.45]	chr19	733480	41	UTR3	UTR3:EXON_MRNA	ZNF557	ENSG00000130544.12	ENST00000252840.11:ENST00000414706.2	protein_coding	protein_coding	protein_coding	protein_coding	0	113	2	5.95751	6.141365	6.32522	0.00956261	0.0017735	0.0658012	0.02121
chr16	1728538	1728637	6371221	0	+	0.616162	(0.58,1]	chr16	628837	35	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000685565.1:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	105	2	6.06394	6.14123	6.21852	0.00350812	3.80904e-4	0.0379357	0.00721291
chr20	35010588	35010688	7550433	0	-	0.56	(0.523,0.58]	chr20	788281	3	SS3_PROX	SS3_PROX:INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	0	108	2	6.074	6.1411999999999995	6.2084	0.00906277	4.95211e-4	0.0637469	0.00865935
chr16	16155496	16155589	6556406	0	-	0.397849	(0.39,0.419]	chr16	653054	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6:ENST00000576204.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	484	2	4.66845	6.141185	7.61392	8.3047e-4	4.62624e-5	0.0171232	0.00155516
chr6	169650456	169650553	3304368	0	-	0.536082	(0.523,0.58]	chr6	319869	8	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	109	2	6.03756	6.14099	6.24442	0.00670944	7.92905e-4	0.0541591	0.0120621
chr22	50233626	50233726	7827197	0	-	0.44	(0.419,0.45]	chr22	821199	1	SS3_PROX	SS3_PROX:INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	111	2	6.07002	6.140765	6.21151	0.0143746	9.41863e-4	0.0821732	0.0135546
chr1	112706164	112706252	563032	0	-	0.568182	(0.523,0.58]	chr1	64621	7	UTR5	UTR5:EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	RHOC	ENSG00000155366.17	ENST00000369633.6:ENST00000369642.7:ENST00000339083.12:ENST00000285735.6:ENST00000468093.5:ENST00000369638.6:ENST00000369637.5:ENST00000369636.6:ENST00000484280.6:ENST00000369632.6:ENST00000425265.6:ENST00000436685.6:ENST00000528831.5:ENST00000484054.3:ENST00000478447.1:ENST00000527563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	121	2	5.53665	6.140335	6.74402	0.00291382	0.00267018	0.0327654	0.0298557
chr3	149889193	149889292	1596072	0	+	0.444444	(0.419,0.45]	chr3	168740	167	INTRON	INTRON	RNF13	ENSG00000082996.20	ENST00000344229.7:ENST00000491086.5:ENST00000392894.8:ENST00000467977.5:ENST00000474348.5:ENST00000467996.1:ENST00000468648.5:ENST00000459632.5:ENST00000466795.5:ENST00000490631.5:ENST00000361785.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	116	2	5.79433	6.140180000000001	6.48603	0.00734278	0.00262626	0.0570055	0.0278348
chr19	58326522	58326622	7412930	0	-	0.64	(0.58,1]	chr19	772006	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000283103	ENSG00000283103.4	ENST00000664481.1:ENST00000634676.2:ENST00000659246.1:ENST00000671228.1:ENST00000658331.1:ENST00000669883.1:ENST00000651375.3:ENST00000669440.2:ENST00000666049.1:ENST00000687313.1	lncRNA	lncRNA	lncRNA	lncRNA	0	106	2	5.96814	6.140035	6.31193	0.00289626	5.06433e-4	0.03418	0.00881473
chr19	18468594	18468693	7347877	0	-	0.626263	(0.58,1]	chr19	761486	23	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	120	2	5.45872	6.13988	6.82104	0.00211999	9.78215e-4	0.0239744	0.0187475
chr7	5768334	5768434	3539064	0	-	0.46	(0.45,0.485]	chr7	341737	10	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000411812.1:ENST00000416985.5:ENST00000476345.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	110	2	6.02069	6.13978	6.25887	0.00748565	0.00101549	0.0576451	0.0143256
chr5	108083169	108083269	2736816	0	-	0.49	(0.485,0.523]	chr5	268851	618	INTRON	INTRON	FBXL17	ENSG00000145743.18	ENST00000542267.7:ENST00000496714.2:ENST00000481160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	109	2	5.8513	6.139765000000001	6.42823	0.0131886	2.78987e-4	0.0785398	0.00577243
chr11	70814966	70815066	5062433	0	-	0.63	(0.58,1]	chr11	492713	74	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	107	2	5.90055	6.139385	6.37822	0.00252415	6.1741e-4	0.031696	0.0101143
chr4	75984625	75984725	2252976	0	-	0.41	(0.39,0.419]	chr4	227518	22	INTRON	INTRON	SDAD1	ENSG00000198301.12	ENST00000395710.5:ENST00000356260.10:ENST00000395711.8:ENST00000503411.5:ENST00000504975.1:ENST00000514710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	112	2	5.7987	6.13924	6.47978	0.0195328	4.14458e-4	0.0955413	0.00767522
chr7	34665724	34665824	3572282	0	-	0.45	(0.419,0.45]	chr7	344517	220	INTRON	INTRON	NPSR1-AS1	ENSG00000197085.11	ENST00000419766.5:ENST00000539747.5:ENST00000439852.5:ENST00000358772.8:ENST00000431669.5	lncRNA	lncRNA	lncRNA	lncRNA	2	348	2	4.27025	6.13922	8.00819	4.88921e-4	4.79097e-4	0.0128157	0.00848849
chr11	70763967	70764067	5061921	0	-	0.36	(0.33,0.36]	chr11	492701	461	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	394	2	4.27762	6.139175	8.00073	2.89561e-4	1.98005e-4	0.00966448	0.00449745
chr14	68057775	68057875	5861440	0	+	0.4	(0.39,0.419]	chr14	572980	571	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5:ENST00000557045.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	115	2	5.80276	6.138755	6.47475	0.00649594	0.00233691	0.0532359	0.0257208
chr17	38728895	38728995	6729372	0	+	0.52	(0.485,0.523]	chr17	676371	34	UTR3	UTR3:EXON_MRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5	protein_coding	protein_coding	protein_coding	protein_coding	1	285	2	4.74602	6.13856	7.5311	0.00223595	9.74032e-6	0.0297553	5.03958e-4
chrX	47219800	47219898	7877801	0	+	0.55102	(0.523,0.58]	chrX	825683	3	INTRON	INTRON	CDK16	ENSG00000102225.17	ENST00000517997.5:ENST00000517479.1:ENST00000457458.6:ENST00000522883.1:ENST00000520295.5:ENST00000357227.9:ENST00000519758.5:ENST00000520893.5:ENST00000517426.5:ENST00000522234.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	288	2	4.88834	6.138335	7.38833	0.00169664	1.43066e-5	0.0255321	6.59187e-4
chr5	60305048	60305148	2677203	0	-	0.39	(0.36,0.39]	chr5	264422	10	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000502484.6:ENST00000509355.5:ENST00000506024.5:ENST00000506510.6:ENST00000511382.1:ENST00000505507.6:ENST00000514552.5:ENST00000515835.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	120	2	5.61929	6.138170000000001	6.65705	0.00462176	0.00359045	0.0442699	0.0342681
chr13	112526741	112526841	5752180	0	-	0.49	(0.485,0.523]	chr13	563914	4	SS5_PROX	SS5_PROX:INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000462580.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	108	2	5.96717	6.137785	6.3084	0.0108319	3.92049e-4	0.0707085	0.00735595
chr8	143516486	143516586	4096758	0	-	0.5	(0.485,0.523]	chr8	389278	82	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6	protein_coding	protein_coding	protein_coding	protein_coding	0	108	2	5.96717	6.137785	6.3084	0.0108319	3.92049e-4	0.0707085	0.00735595
chr2	11789543	11789641	722494	0	+	0.520408	(0.485,0.523]	chr2	84431	7	INTRON	INTRON	LPIN1	ENSG00000134324.12	ENST00000449576.6:ENST00000425416.6:ENST00000396097.5:ENST00000396099.5:ENST00000256720.6:ENST00000674199.1:ENST00000404113.6:ENST00000464953.2:ENST00000454151.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	110	2	5.75784	6.13763	6.51742	0.0154142	2.15808e-4	0.0849828	0.00477041
chr19	6691924	6692024	7322661	0	-	0.52	(0.485,0.523]	chr19	756435	8	INTRON	INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000695653.1:ENST00000695654.1:ENST00000695692.1:ENST00000695652.1:ENST00000695655.1:ENST00000598805.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	241	2	4.7958	6.1375399999999996	7.47928	6.23933e-4	2.51583e-4	0.0146683	0.00534704
chr16	66738941	66739040	6605872	0	-	0.343434	(0.33,0.36]	chr16	660637	23	INTRON	INTRON	DYNC1LI2	ENSG00000135720.13	ENST00000258198.7:ENST00000443351.6:ENST00000440564.6:ENST00000566150.5:ENST00000568180.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	113	2	5.84807	6.13753	6.42699	0.00578704	0.00184078	0.0501412	0.0217471
chr11	43724216	43724316	4846543	0	+	0.4	(0.39,0.419]	chr11	463524	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000283341:HSD17B12	ENSG00000283341.3:ENSG00000149084.13	ENST00000532864.6:ENST00000529261.5:ENST00000527433.6:ENST00000531185.5:ENST00000278353.10:ENST00000636007.1:ENST00000395700.4:ENST00000637401.1:ENST00000636722.1:ENST00000638034.1:ENST00000527213.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	1	254	2	4.73264	6.137395	7.54215	9.5067e-4	4.31394e-4	0.0184489	0.00786314
chr14	104890354	104890450	5926129	0	+	0.53125	(0.523,0.58]	chr14	579999	2	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	6.00701	6.137105	6.2672	0.00644151	8.61362e-4	0.0530091	0.0127848
chr2	10190204	10190304	718203	0	+	0.56	(0.523,0.58]	chr2	84002	341	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	109	2	6.00701	6.137105	6.2672	0.00644151	8.61362e-4	0.0530091	0.0127848
chr11	104948772	104948868	5115236	0	-	0.427083	(0.419,0.45]	chr11	496720	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CASP4	ENSG00000196954.14	ENST00000444739.7:ENST00000525116.5:ENST00000393150.7:ENST00000529565.1:ENST00000533730.5:ENST00000529183.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	113	2	5.75975	6.136815	6.51388	0.0231013	4.29619e-4	0.102982	0.00783248
chr22	28069911	28070011	7775716	0	-	0.44	(0.419,0.45]	chr22	815674	392	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7:ENST00000612946.4:ENST00000442232.1	protein_coding	protein_coding	protein_coding	protein_coding	0	111	2	5.93719	6.136305	6.33542	0.0176643	6.85495e-4	0.0909046	0.0108846
chr17	29690868	29690968	6878342	0	-	0.4	(0.39,0.419]	chr17	698235	58	INTRON	INTRON	SSH2	ENSG00000141298.19	ENST00000540801.6:ENST00000269033.7:ENST00000649863.1:ENST00000394848.5:ENST00000324677.12:ENST00000579040.5:ENST00000577483.1:ENST00000592397.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	110	2	6.07786	6.13586	6.19386	0.012565	8.79539e-4	0.0761905	0.0129939
chr20	58688053	58688153	7498558	0	+	0.49	(0.485,0.523]	chr20	781977	87	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1:ENST00000413559.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	0	111	2	5.87431	6.135775000000001	6.39724	0.00505512	0.00127835	0.0465263	0.0168904
chr10	31323982	31324082	4471793	0	+	0.36	(0.33,0.36]	chr10	427863	15	INTRON	INTRON	ZEB1	ENSG00000148516.23	ENST00000488625.6:ENST00000560196.5:ENST00000542879.5:ENST00000561304.5:ENST00000320985.14:ENST00000560721.6:ENST00000559858.5:ENST00000558440.5:ENST00000437844.6:ENST00000424869.6:ENST00000542815.7:ENST00000558863.5:ENST00000561212.5:ENST00000558655.5:ENST00000561061.5:ENST00000559496.5:ENST00000446923.7:ENST00000557827.5:ENST00000606671.5:ENST00000606161.1:ENST00000558832.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	110	2	6.03758	6.135725	6.23387	0.00810355	0.00113952	0.0602166	0.0155794
chr9	124492173	124492262	4402645	0	-	0.662921	(0.58,1]	chr9	419811	6	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	2	290	2	4.66185	6.13552	7.60919	1.63302e-4	5.00243e-5	0.00716861	0.00164756
chr7	158915797	158915895	3523147	0	+	0.438776	(0.419,0.45]	chr7	340293	11	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	318	2	5.00556	6.1355	7.26544	0.00213647	5.39706e-5	0.0290853	0.00173477
chr13	113028742	113028840	5655916	0	+	0.571429	(0.523,0.58]	chr13	555157	18	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486806.1:ENST00000473345.5	protein_coding	protein_coding	protein_coding	protein_coding	0	114	2	5.73609	6.135365	6.53464	0.00395533	0.0017613	0.0406092	0.0211077
chr2	45509531	45509631	1138476	0	-	0.54	(0.523,0.58]	chr2	124602	208	INTRON	INTRON	SRBD1	ENSG00000068784.13	ENST00000263736.5:ENST00000475073.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	108	2	6.09678	6.135305	6.17383	0.00760615	6.74499e-4	0.0579698	0.0108081
chr1	156084881	156084981	250727	0	+	0.56	(0.523,0.58]	chr1	29429	13	INTRON	INTRON	LMNA	ENSG00000160789.24	ENST00000502751.5:ENST00000368301.6:ENST00000470835.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	113	2	5.77287	6.1347249999999995	6.49658	0.00424382	0.00160162	0.0422099	0.0197827
chr20	32480882	32480980	7543677	0	-	0.571429	(0.523,0.58]	chr20	787372	58	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	122	2	5.49322	6.1346799999999995	6.77614	0.00324246	0.00251197	0.0319521	0.031696
chr20	62030306	62030406	7583451	0	-	0.47	(0.45,0.485]	chr20	792369	152	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000252996.9:ENST00000608887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	109	2	6.0799	6.13466	6.18942	0.00844217	8.68466e-4	0.0617623	0.0128564
chr10	132766643	132766743	4619139	0	+	0.53	(0.523,0.58]	chr10	441207	4	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000445580.1	protein_coding	protein_coding	protein_coding	protein_coding	0	112	2	5.62258	6.133915	6.64525	0.0193313	1.40789e-4	0.0954446	0.00351181
chr6	16685426	16685526	3103699	0	-	0.45	(0.419,0.45]	chr6	300893	175	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6:ENST00000495178.1:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	111	2	6.07595	6.133794999999999	6.19164	0.0118587	0.00132452	0.0740271	0.0173138
chr8	122787045	122787145	3909706	0	+	0.45	(0.419,0.45]	chr8	373449	47	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6	protein_coding	protein_coding	protein_coding	protein_coding	4	501	2	3.58414	6.133735	8.68333	0.00115411	1.35698e-4	0.0157188	0.00646561
chr19	15643306	15643406	7215386	0	+	0.25	[0,0.29]	chr19	737133	13	INTRON	INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	113	2	5.67568	6.13353	6.59138	0.00180872	0.00174548	0.026458	0.0210473
chr11	126210489	126210589	5140250	0	-	0.39	(0.36,0.39]	chr11	499625	2	SS5_PROX	SS5_PROX:INTRON	RPUSD4	ENSG00000165526.9	ENST00000298317.9:ENST00000533628.5:ENST00000526942.5:ENST00000532674.2:ENST00000534393.5:ENST00000532800.1:ENST00000525812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	111	2	5.83054	6.1335	6.43646	0.0182399	4.61522e-4	0.0921579	0.00824056
chr16	89431826	89431925	6661152	0	-	0.585859	(0.58,1]	chr16	666753	1	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	291	2	4.95195	6.13305	7.31415	3.2338e-4	1.83439e-5	0.0102338	7.92791e-4
chr20	47257704	47257804	7569891	0	-	0.22	[0,0.29]	chr20	791018	79	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	106	2	5.8887	6.133025	6.37735	0.00739414	2.4707e-4	0.0573244	0.00526245
chr21	45434043	45434143	7630603	0	+	0.62	(0.58,1]	chr21	797656	282	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	1	262	2	4.99628	6.132885	7.26949	7.19051e-4	7.53179e-6	0.0158237	4.20943e-4
chr13	93891939	93892039	5624433	0	+	0.26	[0,0.29]	chr13	553064	610	INTRON	INTRON	GPC6	ENSG00000183098.11	ENST00000377047.9	protein_coding	protein_coding	protein_coding	protein_coding	0	124	2	5.20713	6.13255	7.05797	0.0248721	3.05928e-5	0.10758	0.00114405
chr5	74732921	74733021	2691464	0	-	0.41	(0.39,0.419]	chr5	265840	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GFM2	ENSG00000164347.18	ENST00000345239.6:ENST00000296805.8:ENST00000509430.5:ENST00000515125.5:ENST00000514734.5:ENST00000506263.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	111	2	5.9965	6.1321650000000005	6.26783	0.00920367	0.00145172	0.0644228	0.0184691
chr19	1172029	1172129	7305773	0	-	0.69	(0.58,1]	chr19	753058	30	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	104	2	6.0945	6.131975000000001	6.16945	0.00387582	3.47472e-4	0.0401256	0.00673552
chr19	8240085	8240185	7200282	0	+	0.46	(0.45,0.485]	chr19	734187	2	SS3_PROX	SS3_PROX:INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559490.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	114	2	5.75605	6.13172	6.50739	0.00482293	0.002004	0.0453395	0.0230381
chr10	31387194	31387266	4472432	0	+	0.444444	(0.419,0.45]	chr10	427894	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ZEB1	ENSG00000148516.23	ENST00000488625.6:ENST00000560196.5:ENST00000542879.5:ENST00000561304.5:ENST00000320985.14:ENST00000560721.6:ENST00000559858.5:ENST00000558440.5:ENST00000437844.6:ENST00000424869.6:ENST00000542815.7:ENST00000558863.5:ENST00000561212.5:ENST00000558655.5:ENST00000561061.5:ENST00000559496.5:ENST00000446923.7:ENST00000557827.5:ENST00000606671.5:ENST00000606161.1:ENST00000493835.5:ENST00000560909.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	119	2	5.64904	6.131215	6.61339	0.0059347	0.00368884	0.0506158	0.0348088
chr1	9293857	9293953	19592	0	+	0.46875	(0.45,0.485]	chr1	2201	4	INTRON	INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11	protein_coding	protein_coding	protein_coding	protein_coding	0	113	2	5.61431	6.13115	6.64799	0.0217589	1.80357e-4	0.100615	0.00419938
chr1	17676582	17676682	54977	0	+	0.52	(0.485,0.523]	chr1	5603	116	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	109	2	5.97221	6.1311350000000004	6.29006	0.00613935	9.86421e-4	0.0517628	0.0140716
chr1	169546141	169546241	615203	0	-	0.47	(0.45,0.485]	chr1	72847	3	SS5_PROX	SS5_PROX:INTRON	F5	ENSG00000198734.12	ENST00000367797.9:ENST00000367796.3	protein_coding	protein_coding	protein_coding	protein_coding	0	111	2	5.89443	6.13105	6.36767	0.00618594	0.00141013	0.0519442	0.0180659
chrX	300413	300511	7829275	0	+	0.295918	(0.29,0.33]	chrX	821899	12	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	3	549	2	3.0905	6.130115	9.16973	0.00467904	1.3801e-5	0.0412355	0.00217358
chr6	131643829	131643928	3006954	0	+	0.272727	[0,0.29]	chr6	294028	19	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000423831.5:ENST00000470930.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	109	2	5.82486	6.129855	6.43485	0.00250459	0.00117475	0.031696	0.0158316
chr2	138567748	138567846	904557	0	+	0.346939	(0.33,0.36]	chr2	101982	24	INTRON	INTRON	SPOPL	ENSG00000144228.9	ENST00000280098.9:ENST00000420679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	111	2	5.74693	6.129695	6.51246	0.0181681	3.21298e-4	0.0921579	0.0063695
chr16	81625493	81625593	6509552	0	+	0.59	(0.58,1]	chr16	645926	34	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	104	2	5.86491	6.1294	6.39389	0.00707578	1.38027e-4	0.0558168	0.00347229
chr21	45109042	45109142	7629004	0	+	0.59	(0.58,1]	chr21	797509	339	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	104	2	5.86491	6.1294	6.39389	0.00707578	1.38027e-4	0.0558168	0.00347229
chr15	67418488	67418587	6309992	0	-	0.363636	(0.36,0.39]	chr15	622081	51	INTRON	INTRON	IQCH-AS1	ENSG00000259673.6	ENST00000669759.1:ENST00000561232.5:ENST00000559298.5:ENST00000670822.1:ENST00000657717.1	lncRNA	lncRNA	lncRNA	lncRNA	0	111	2	5.80006	6.12932	6.45858	0.0191255	4.35017e-4	0.0952349	0.007918
chr11	70797242	70797342	5062254	0	-	0.49	(0.485,0.523]	chr11	492701	794	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	111	2	5.84014	6.12895	6.41776	0.00486906	0.00139792	0.0456282	0.0179863
chr14	71467946	71468046	5876829	0	+	0.47	(0.45,0.485]	chr14	573694	3	INTRON	INTRON	SIPA1L1	ENSG00000197555.10	ENST00000555989.5:ENST00000553453.5:ENST00000556408.5:ENST00000381232.8:ENST00000554362.5:ENST00000556780.5:ENST00000554126.5:ENST00000555652.5:ENST00000557151.5:ENST00000557712.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	108	2	6.01306	6.128640000000001	6.24422	0.0113949	5.58345e-4	0.0723462	0.00944382
chr11	34922810	34922910	4839941	0	+	0.37	(0.36,0.39]	chr11	463044	56	INTRON	INTRON	PDHX	ENSG00000110435.13	ENST00000533550.5:ENST00000448838.8:ENST00000227868.9:ENST00000430469.6:ENST00000533262.1	protein_coding	protein_coding	protein_coding	protein_coding	0	110	2	6.05626	6.128555	6.20085	0.0100561	0.00124043	0.0677306	0.0165207
chr17	17820606	17820692	6865726	0	-	0.581395	(0.58,1]	chr17	695913	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000395751.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	106	2	5.90055	6.1285050000000005	6.35646	0.00264106	6.1741e-4	0.0325876	0.0101143
chr5	140404868	140404968	2551340	0	+	0.35	(0.33,0.36]	chr5	253267	22	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000616482.4:ENST00000360839.7:ENST00000421134.5:ENST00000394723.7:ENST00000511151.5:ENST00000394722.7	protein_coding	protein_coding	protein_coding	protein_coding	0	119	2	5.59003	6.1285	6.66697	0.00376513	0.00344516	0.0395491	0.0333853
chr7	92825395	92825495	3638857	0	-	0.47	(0.45,0.485]	chr7	350324	502	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	6.02069	6.12839	6.23609	0.00778782	0.00101549	0.0590114	0.0143256
chr5	654468	654566	2378828	0	+	0.561224	(0.523,0.58]	chr5	237653	9	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000499639.2	protein_coding	processed_transcript	protein_coding	processed_transcript	0	109	2	5.75742	6.12833	6.49924	0.0155135	2.16101e-4	0.0849828	0.00477041
chr3	131469195	131469295	1915910	0	-	0.45	(0.419,0.45]	chr3	194722	1	SS5_PROX	SS5_PROX:INTRON	MRPL3	ENSG00000114686.9	ENST00000264995.8:ENST00000511168.5:ENST00000510043.1:ENST00000425847.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	309	2	4.84871	6.12823	7.40775	0.00283817	3.58484e-5	0.033773	0.00128261
chr1	228155160	228155259	358138	0	+	0.646465	(0.58,1]	chr1	40434	48	INTRON	INTRON	GJC2	ENSG00000198835.4	ENST00000366714.3	protein_coding	protein_coding	protein_coding	protein_coding	0	111	2	5.67642	6.127945	6.57947	0.00165065	0.00117039	0.0250898	0.0157899
chr16	3823950	3824050	6539374	0	-	0.48	(0.45,0.485]	chr16	650420	105	INTRON	INTRON	CREBBP	ENSG00000005339.15	ENST00000262367.10:ENST00000382070.7:ENST00000636895.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	108	2	5.98601	6.127945	6.26988	0.0119228	5.20615e-4	0.0741726	0.00899129
chr9	93618769	93618869	4184077	0	+	0.47	(0.45,0.485]	chr9	397705	415	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	108	2	5.98601	6.127945	6.26988	0.0119228	5.20615e-4	0.0741726	0.00899129
chr8	9771407	9771499	3754890	0	+	0.48913	(0.485,0.523]	chr8	360881	8	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	0	108	2	6.03396	6.12783	6.2217	0.00693912	8.35707e-4	0.0553898	0.012554
chr3	172115486	172115586	1628224	0	+	0.43	(0.419,0.45]	chr3	170543	25	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	110	2	6.01834	6.127750000000001	6.23716	0.015582500000000001	8.82327e-4	0.0849828	0.0129974
chr16	83921359	83921459	6513138	0	+	0.56	(0.523,0.58]	chr16	646141	60	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	107	2	5.99431	6.12772	6.26113	0.0104033	4.27166e-4	0.0686837	0.00779962
chr2	235998710	235998810	1067603	0	+	0.43	(0.419,0.45]	chr2	115748	297	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5:ENST00000418654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	110	2	6.07002	6.12771	6.1854	0.0143746	0.00100635	0.0821732	0.0142602
chr1	150235971	150236063	585558	0	-	0.608696	(0.58,1]	chr1	67638	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANP32E	ENSG00000143401.15	ENST00000583931.6:ENST00000629042.2:ENST00000436748.6:ENST00000369114.9:ENST00000369115.3:ENST00000534220.1:ENST00000532744.2	protein_coding	protein_coding	protein_coding	protein_coding	1	264	2	5.06852	6.127655000000001	7.18679	6.09599e-4	1.00244e-5	0.0144841	5.13591e-4
chr20	23635053	23635153	7537533	0	-	0.5	(0.485,0.523]	chr20	786641	4	SS5_PROX	SS5_PROX:INTRON	CST3	ENSG00000101439.9	ENST00000398411.5:ENST00000398409.1:ENST00000376925.8	protein_coding	protein_coding	protein_coding	protein_coding	3	839	2	5.171	6.12755	7.0841	3.76118e-4	1.52007e-7	0.011139	3.02475e-5
chr3	48424617	48424717	1766678	0	-	0.63	(0.58,1]	chr3	182275	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	108	2	5.79283	6.1274750000000004	6.46212	0.00211728	8.4246e-4	0.028892	0.0125912
chr3	13374463	13374553	1692593	0	-	0.533333	(0.523,0.58]	chr3	176730	2	INTRON	INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000420141.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	107	2	5.96674	6.126765	6.28679	0.0109075	3.97355e-4	0.0707085	0.00741985
chr21	33234650	33234750	7609115	0	+	0.5	(0.485,0.523]	chr21	794612	37	INTRON	INTRON	IFNAR2	ENSG00000159110.21	ENST00000683941.1:ENST00000382264.7:ENST00000342136.9:ENST00000404220.7:ENST00000420068.1:ENST00000342101.7:ENST00000382238.6:ENST00000413881.5:ENST00000443073.5:ENST00000447980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	107	2	6.04835	6.126575	6.2048	0.00941539	5.23665e-4	0.0653252	0.0090184
chr11	71200818	71200918	5066311	0	-	0.37	(0.36,0.39]	chr11	492802	256	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000482659.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	303	2	4.89361	6.126435	7.35926	0.00227209	3.44393e-5	0.0301327	0.00124977
chr13	40585356	40585456	5692519	0	-	0.45	(0.419,0.45]	chr13	558751	222	INTRON	INTRON	FOXO1	ENSG00000150907.10	ENST00000379561.6:ENST00000655267.1:ENST00000660760.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	126	2	5.44407	6.126305	6.80854	0.00585948	0.00425752	0.0474117	0.0422596
chr13	112912217	112912317	5654738	0	+	0.48	(0.45,0.485]	chr13	555099	17	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000442625.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	110	2	5.92705	6.12609	6.32513	0.00666704	0.00129636	0.0540577	0.0170746
chr16	89301149	89301236	6659819	0	-	0.632184	(0.58,1]	chr16	666653	2	SS3_PROX	SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	104	2	5.83375	6.126005	6.41826	0.00751249	1.27804e-4	0.0576451	0.00328053
chr14	104721265	104721362	5925639	0	+	0.608247	(0.58,1]	chr14	579884	26	UTR3	UTR3:EXON_MRNA	INF2	ENSG00000203485.14	ENST00000330634.11:ENST00000392634.9:ENST00000675207.1:ENST00000675638.1	protein_coding	protein_coding	protein_coding	protein_coding	0	112	2	5.63543	6.125995	6.61656	0.00152464	0.00131165	0.0240691	0.0171898
chr11	110221552	110221652	5123699	0	-	0.53	(0.523,0.58]	chr11	497282	208	INTRON	INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000645312.1:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	114	2	5.69834	6.125814999999999	6.55329	0.00382069	0.00194036	0.0398603	0.0225083
chr6	161052767	161052867	3069005	0	+	0.39	(0.36,0.39]	chr6	298388	24	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	110	2	5.86038	6.12579	6.3912	0.0174081	5.20645e-4	0.0901374	0.00899129
chr6	11545271	11545371	2853712	0	+	0.41	(0.39,0.419]	chr6	278916	65	INTRON	INTRON	TMEM170B	ENSG00000205269.6	ENST00000379426.2	protein_coding	protein_coding	protein_coding	protein_coding	0	120	2	5.57892	6.125755	6.67259	0.00461678	0.00396694	0.0442497	0.0368027
chr11	68350424	68350523	4882462	0	+	0.616162	(0.58,1]	chr11	470548	18	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	107	2	5.82964	6.12521	6.42078	0.00230938	7.58111e-4	0.0302623	0.0117078
chr17	75891623	75891712	6973484	0	-	0.629214	(0.58,1]	chr17	711545	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRIM65	ENSG00000141569.12	ENST00000591668.5:ENST00000592642.1:ENST00000269383.8:ENST00000648382.1:ENST00000543309.5:ENST00000540128.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	107	2	5.82964	6.12521	6.42078	0.00230938	7.58111e-4	0.0302623	0.0117078
chr18	13262744	13262844	7023188	0	+	0.71	(0.58,1]	chr18	717514	434	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000590371.5:ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000590115.1:ENST00000677055.1:ENST00000399848.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	107	2	5.82964	6.12521	6.42078	0.00230938	7.58111e-4	0.0302623	0.0117078
chr10	132292342	132292442	4782533	0	-	0.51	(0.485,0.523]	chr10	457371	434	INTRON	INTRON	STK32C	ENSG00000165752.17	ENST00000298630.8:ENST00000368622.5:ENST00000368620.2	protein_coding	protein_coding	protein_coding	protein_coding	0	107	2	5.96717	6.12518	6.28319	0.0108319	4.20832e-4	0.0707085	0.00773187
chr14	70026744	70026844	5872650	0	+	0.46	(0.45,0.485]	chr14	573363	29	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	5.99015	6.12451	6.25887	0.00748565	0.00110015	0.0576451	0.015136
chr17	83025579	83025679	6990803	0	-	0.6	(0.58,1]	chr17	715120	107	INTRON	INTRON	B3GNTL1	ENSG00000175711.9	ENST00000320865.4:ENST00000576599.5:ENST00000570947.5:ENST00000571954.5:ENST00000573629.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	103	2	5.98322	6.1243300000000005	6.26544	0.00562007	2.06156e-4	0.0493906	0.00461335
chr18	48846511	48846610	7059743	0	+	0.494949	(0.485,0.523]	chr18	720358	288	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000587860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	112	2	5.58723	6.124285	6.66134	0.0203514	1.41724e-4	0.0979211	0.00352935
chr12	132532469	132532569	5352940	0	+	0.63	(0.58,1]	chr12	523670	41	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	103	2	6.06599	6.124245	6.1825	0.00477081	2.66047e-4	0.0450109	0.00556524
chr8	124661014	124661114	4064267	0	-	0.42	(0.419,0.45]	chr8	387128	417	INTRON	INTRON	MTSS1	ENSG00000170873.19	ENST00000518547.6:ENST00000378017.7:ENST00000325064.9:ENST00000522162.1:ENST00000529463.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	110	2	6.1041	6.124155	6.14421	0.0127879	0.00123471	0.0769397	0.0164614
chr2	167956569	167956669	1306924	0	-	0.38	(0.36,0.39]	chr2	140174	6	INTRON	INTRON	STK39	ENSG00000198648.11	ENST00000487143.5:ENST00000355999.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	121	2	5.37307	6.124035	6.875	0.0361409	1.38592e-4	0.127853	0.00347765
chr8	143323698	143323798	4095565	0	-	0.6	(0.58,1]	chr8	389126	3	SS5_PROX	SS5_PROX:INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	105	2	5.73602	6.12392	6.51182	0.00904546	9.48877e-5	0.0637469	0.00262417
chr9	134338236	134338336	4260805	0	+	0.59	(0.58,1]	chr9	406311	112	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	105	2	5.93474	6.123335	6.31193	0.00289626	5.58693e-4	0.03418	0.00944382
chr13	113506558	113506657	5658342	0	+	0.515152	(0.485,0.523]	chr13	555703	6	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000462877.5	protein_coding	protein_coding	protein_coding	protein_coding	1	284	2	4.83805	6.1231349999999996	7.40822	0.00186369	1.43934e-5	0.0269723	6.61734e-4
chr7	566561	566661	3523750	0	-	0.43	(0.419,0.45]	chr7	340370	147	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000400758.6	protein_coding	protein_coding	protein_coding	protein_coding	0	122	2	5.36395	6.123105	6.88226	0.0407485	1.58518e-4	0.135868	0.00384084
chr15	85384867	85384967	6176246	0	+	0.46	(0.45,0.485]	chr15	607519	28	INTRON	INTRON	AKAP13	ENSG00000170776.22	ENST00000559362.5:ENST00000394518.7:ENST00000560302.5:ENST00000361243.6:ENST00000560256.1	protein_coding	protein_coding	protein_coding	protein_coding	0	108	2	5.90167	6.122945	6.34422	0.0137135	4.24458e-4	0.0799457	0.00777807
chr8	38771291	38771391	3802268	0	+	0.48	(0.45,0.485]	chr8	365828	135	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	237	2	5.04227	6.122730000000001	7.20319	0.00131807	1.38139e-4	0.0221729	0.00347303
chr11	70585829	70585929	5060131	0	-	0.57	(0.523,0.58]	chr11	492663	825	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	234	2	4.90993	6.1226199999999995	7.33531	8.42028e-4	1.72685e-4	0.0172456	0.00408359
chr16	89349793	89349892	6660316	0	-	0.333333	(0.33,0.36]	chr16	666695	61	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	331	2	4.96431	6.122615	7.28092	0.00119342	5.08201e-5	0.020937	0.00166896
chr2	108610154	108610254	871715	0	+	0.33	(0.29,0.33]	chr2	98313	25	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1:ENST00000695519.1:ENST00000332345.10:ENST00000695520.1:ENST00000393310.5:ENST00000695521.1:ENST00000410093.5	protein_coding	protein_coding	protein_coding	protein_coding	0	107	2	6.08779	6.122305	6.15682	0.0069975	7.71544e-4	0.0555241	0.0118336
chr1	177949336	177949435	624540	0	-	0.454545	(0.45,0.485]	chr1	73763	8	INTRON	INTRON	SEC16B	ENSG00000120341.19	ENST00000308284.11:ENST00000528461.5:ENST00000526773.2:ENST00000464631.6:ENST00000527976.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	113	2	5.75605	6.122145	6.48824	0.00499158	0.002004	0.0463896	0.0230381
chr4	1325763	1325860	1995296	0	+	0.608247	(0.58,1]	chr4	203264	18	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	104	2	5.8019	6.122059999999999	6.44222	0.007984	1.18459e-4	0.0596361	0.00311099
chr22	26580978	26581078	7773871	0	-	0.45	(0.419,0.45]	chr22	815506	154	INTRON	INTRON	TPST2	ENSG00000128294.16	ENST00000338754.9:ENST00000403880.5:ENST00000442495.5:ENST00000440953.5:ENST00000450022.1	protein_coding	protein_coding	protein_coding	protein_coding	0	110	2	6.07595	6.122035	6.16812	0.0123115	0.00132452	0.0756356	0.0173138
chr8	142299785	142299885	4094038	0	-	0.43	(0.419,0.45]	chr8	388979	149	INTRON	INTRON	TSNARE1	ENSG00000171045.16	ENST00000524325.6:ENST00000307180.4:ENST00000520166.5:ENST00000519651.5:ENST00000662555.1	protein_coding	protein_coding	protein_coding	protein_coding	0	110	2	6.07595	6.122035	6.16812	0.0123115	0.00132452	0.0756356	0.0173138
chr11	96244595	96244695	5112582	0	-	0.33	(0.29,0.33]	chr11	496566	1507	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	0	116	2	5.61082	6.12188	6.63294	0.0028785	0.00264971	0.0341432	0.027979
chr2	240625379	240625479	1075197	0	+	0.69	(0.58,1]	chr2	116654	60	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	0	106	2	5.86553	6.121874999999999	6.37822	0.00252415	6.8352e-4	0.031696	0.0108717
chr17	82146868	82146968	6987842	0	-	0.52	(0.485,0.523]	chr17	714577	111	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000419322.6:ENST00000392346.6:ENST00000582040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	107	2	5.9104	6.121785	6.33317	0.0119344	3.65589e-4	0.0741726	0.00700609
chr2	187366889	187366988	1341791	0	-	0.40404	(0.39,0.419]	chr2	142374	30	INTRON	INTRON	CALCRL	ENSG00000064989.13	ENST00000392370.8:ENST00000409998.5:ENST00000410068.5	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	5.65745	6.1217299999999994	6.58601	0.00536607	0.00330348	0.048165	0.0323993
chr17	55077677	55077777	6756136	0	+	0.4	(0.39,0.419]	chr17	681658	2	SS3_PROX	SS3_PROX:INTRON	STXBP4	ENSG00000166263.13	ENST00000376352.6:ENST00000434978.6	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	5.97258	6.121705	6.27083	0.0148746	7.20415e-4	0.0833515	0.0112959
chrX	46494422	46494522	7874599	0	+	0.51	(0.485,0.523]	chrX	825279	199	INTRON	INTRON	KRBOX4	ENSG00000147121.16	ENST00000478600.5	protein_coding	protein_coding	protein_coding	protein_coding	0	111	2	5.80515	6.121565	6.43798	0.00469187	0.00153111	0.0447158	0.0191213
chr19	3529697	3529796	7191595	0	+	0.626263	(0.58,1]	chr19	732249	15	INTRON	INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	103	2	6.11865	6.121544999999999	6.12444	0.00429384	3.17437e-4	0.042386	0.00632787
chr7	2278705	2278805	3532963	0	-	0.59	(0.58,1]	chr7	341202	4	SS3_PROX	SS3_PROX:INTRON	SNX8	ENSG00000106266.11	ENST00000222990.8:ENST00000435060.5:ENST00000457286.5:ENST00000435336.5:ENST00000494722.1:ENST00000447136.1:ENST00000419693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	103	2	6.11865	6.121544999999999	6.12444	0.00429384	3.17437e-4	0.042386	0.00632787
chr3	188265352	188265452	1652912	0	+	0.54	(0.523,0.58]	chr3	173754	248	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	0	107	2	5.88072	6.1209299999999995	6.36114	0.0126258	3.21725e-4	0.0761905	0.0063695
chr12	81097985	81098085	5283214	0	+	0.48	(0.45,0.485]	chr12	514448	192	INTRON	INTRON	ACSS3	ENSG00000111058.8	ENST00000549175.1:ENST00000261206.7:ENST00000548058.6	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	5.78096	6.1205750000000005	6.46019	0.0166968	3.07362e-4	0.0884836	0.00618726
chr5	59872280	59872380	2672864	0	-	0.42	(0.419,0.45]	chr5	264372	748	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000502484.6:ENST00000405053.7:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	119	2	5.61031	6.120505	6.6307	0.00576404	0.004032	0.0500197	0.0371291
chr16	4000986	4001086	6540637	0	-	0.36	(0.33,0.36]	chr16	650503	71	INTRON	INTRON	ADCY9	ENSG00000162104.10	ENST00000294016.8:ENST00000575550.5:ENST00000571467.1:ENST00000571889.1:ENST00000572288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	112	2	5.81391	6.12045	6.42699	0.00578704	0.00200357	0.0501412	0.0230381
chr17	72920847	72920947	6967497	0	-	0.47	(0.45,0.485]	chr17	710518	707	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	108	2	5.87243	6.1203	6.36817	0.0143887	3.97249e-4	0.0821732	0.00741985
chr20	44401976	44402053	7482932	0	+	0.480519	(0.45,0.485]	chr20	779634	2	SS5_PROX	SS5_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000682427.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	438	2	4.36315	6.11963	7.87611	3.50026e-4	8.51086e-5	0.0106878	0.00242869
chr8	143607878	143607961	4097302	0	-	0.518072	(0.485,0.523]	chr8	389391	4	SS5_PROX	SS5_PROX:INTRON	PYCR3	ENSG00000104524.14	ENST00000495276.6:ENST00000220966.10:ENST00000447926.6:ENST00000433751.5:ENST00000377579.7:ENST00000462036.5:ENST00000482616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	110	2	5.65791	6.119385	6.58086	0.0181582	1.79455e-4	0.0921579	0.00418827
chr22	50679628	50679728	7754965	0	+	0.51	(0.485,0.523]	chr22	812715	2	SS5_PROX	SS5_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	107	2	5.88115	6.119339999999999	6.35753	0.012541	3.41236e-4	0.0761905	0.00667174
chr1	40759592	40759692	102057	0	+	0.38	(0.36,0.39]	chr1	12195	9	INTRON	INTRON	NFYC	ENSG00000066136.21	ENST00000424419.6:ENST00000427410.6:ENST00000447388.8:ENST00000425457.6:ENST00000456393.6:ENST00000372654.5:ENST00000372653.5:ENST00000372669.8:ENST00000372652.5:ENST00000372651.5:ENST00000440226.7:ENST00000416859.6:ENST00000308733.9:ENST00000414185.1:ENST00000525349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	109	2	6.08498	6.119199999999999	6.15342	0.0108737	0.00115345	0.0707085	0.0157112
chr13	112976127	112976226	5655382	0	+	0.40404	(0.39,0.419]	chr13	555120	63	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	124	2	5.45246	6.119070000000001	6.78568	0.00529344	0.00378521	0.044517	0.0396337
chr18	80177562	80177662	7183054	0	-	0.45	(0.419,0.45]	chr18	730359	166	INTRON	INTRON	PARD6G	ENSG00000178184.16	ENST00000353265.8	protein_coding	protein_coding	protein_coding	protein_coding	0	113	2	5.66212	6.11881	6.5755	0.0266819	3.64701e-4	0.111563	0.00699922
chr10	74240342	74240442	4512577	0	+	0.43	(0.419,0.45]	chr10	431925	154	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	307	2	4.32116	6.11877	7.91638	0.00718978	8.03548e-6	0.056408	4.39299e-4
chr10	127262322	127262422	4610550	0	+	0.43	(0.419,0.45]	chr10	440799	45	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2:ENST00000484400.5:ENST00000464466.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	120	2	5.40477	6.11871	6.83265	0.0385125	1.81728e-4	0.131324	0.00422429
chr19	437277	437371	7303560	0	-	0.521277	(0.485,0.523]	chr19	752509	2	INTRON	INTRON	SHC2	ENSG00000129946.11	ENST00000264554.11:ENST00000590222.5:ENST00000590113.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	120	2	5.30837	6.11844	6.92851	0.0314138	6.37267e-5	0.12069	0.00195661
chr14	54626091	54626191	5820034	0	+	0.37	(0.36,0.39]	chr14	569049	576	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	346	2	4.14171	6.118285	8.09486	6.26867e-4	3.18146e-4	0.0102303	0.010147400000000001
chr21	43974767	43974866	7625539	0	+	0.636364	(0.58,1]	chr21	796959	29	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000398063.6:ENST00000398058.5:ENST00000546158.1:ENST00000479117.5:ENST00000467358.5:ENST00000484865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	107	2	5.59447	6.11808	6.64169	0.0117666	6.2385e-5	0.0737098	0.00192539
chr9	4714381	4714480	4269914	0	-	0.343434	(0.33,0.36]	chr9	407900	9	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	0	111	2	5.68109	6.117765	6.55444	0.0201622	2.86128e-4	0.0973366	0.00586813
chr8	47882297	47882397	3973153	0	-	0.52	(0.485,0.523]	chr8	380026	2	SS3_PROX	SS3_PROX:INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	1	243	2	5.54049	6.117685	6.69488	0.00290687	2.53674e-5	0.0342042	9.97976e-4
chr19	41894106	41894206	7264135	0	+	0.53	(0.523,0.58]	chr19	745258	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ARHGEF1	ENSG00000076928.18	ENST00000600274.5:ENST00000354532.8:ENST00000599846.5:ENST00000347545.8:ENST00000378152.8:ENST00000337665.8:ENST00000598812.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	107	2	6.03756	6.117649999999999	6.19774	0.0072907	7.92905e-4	0.0567247	0.0120621
chr5	616904	617003	2378439	0	+	0.545455	(0.523,0.58]	chr5	237586	41	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6	protein_coding	protein_coding	protein_coding	protein_coding	1	231	2	5.0708	6.1173	7.1638	0.00118398	1.05737e-4	0.020806	0.00286061
chr17	643095	643195	6823607	0	-	0.48	(0.45,0.485]	chr17	689804	99	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000680944.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000681830.1:ENST00000679959.1:ENST00000680114.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000570650.2:ENST00000679680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	108	2	5.84258	6.117155	6.39173	0.0151085	3.72107e-4	0.0841543	0.00707906
chr9	14781602	14781701	4279516	0	-	0.50505	(0.485,0.523]	chr9	408888	22	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7:ENST00000485068.5:ENST00000466679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	322	2	4.28453	6.1171500000000005	7.94977	2.96519e-4	2.37499e-4	0.0086821	0.00602677
chr20	34072984	34073062	7460402	0	+	0.320513	(0.29,0.33]	chr20	776607	3	INTRON	INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000413297.5:ENST00000246194.8:ENST00000333552.9:ENST00000442805.1:ENST00000493399.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	376	2	4.5393	6.117075	7.69485	3.37688e-4	7.01883e-5	0.0105112	0.00210949
chr15	64562841	64562941	6131963	0	+	0.49	(0.485,0.523]	chr15	603266	599	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	235	2	4.85547	6.11685	7.37823	7.64953e-4	2.10628e-4	0.0163688	0.00469277
chr5	1603933	1604033	2610321	0	-	0.58	(0.523,0.58]	chr5	259937	8	INTRON	INTRON	PDCD6P1	ENSG00000188002.11	ENST00000507841.5:ENST00000512335.5:ENST00000692393.1:ENST00000507290.5:ENST00000690809.1:ENST00000688433.1:ENST00000507505.5:ENST00000691115.1:ENST00000502273.7:ENST00000522848.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	108	2	5.94389	6.116759999999999	6.28963	0.00618741	0.0010207	0.0519442	0.0143498
chr17	80274498	80274597	6807309	0	+	0.59596	(0.58,1]	chr17	687364	7	INTRON	INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000319921.4	protein_coding	protein_coding	protein_coding	protein_coding	0	103	2	6.06394	6.116695	6.16945	0.00387582	3.80904e-4	0.0401256	0.00721291
chr16	81680123	81680223	6510112	0	+	0.71	(0.58,1]	chr16	645979	11	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	3	359	2	4.04163	6.116655	8.19168	1.81117e-4	4.08893e-5	0.00421416	0.00354247
chr2	127302330	127302429	1264780	0	-	0.434343	(0.419,0.45]	chr2	136284	38	UTR3	UTR3:EXON_MRNA	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5	protein_coding	protein_coding	protein_coding	protein_coding	3	500	2	3.90508	6.116505	8.32793	0.00487774	2.32283e-6	0.0456813	1.84974e-4
chr10	79221672	79221772	4533578	0	+	0.55	(0.523,0.58]	chr10	432457	50	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	5.8779	6.116395000000001	6.35489	0.00549977	0.00121652	0.0489559	0.0162693
chr4	124708599	124708699	2320516	0	-	0.44	(0.419,0.45]	chr4	233240	293	INTRON	INTRON	ANKRD50	ENSG00000151458.12	ENST00000504087.6:ENST00000515641.1	protein_coding	protein_coding	protein_coding	protein_coding	0	110	2	6.01795	6.116365	6.21478	0.011428	0.00152916	0.0723462	0.0191213
chr1	51737461	51737560	123780	0	+	0.454545	(0.45,0.485]	chr1	15354	70	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000484890.5:ENST00000532975.5:ENST00000534040.5:ENST00000527631.5:ENST00000531828.5:ENST00000361556.9:ENST00000473207.6:ENST00000533884.5:ENST00000481937.5:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	107	2	6.01306	6.11558	6.2181	0.0113949	5.99406e-4	0.0723462	0.00993857
chr4	146467391	146467490	2336098	0	-	0.434343	(0.419,0.45]	chr4	234367	242	INTRON	INTRON	SLC10A7	ENSG00000120519.16	ENST00000432059.6:ENST00000335472.12:ENST00000693222.1:ENST00000507030.5:ENST00000511315.2:ENST00000507560.5:ENST00000685433.1:ENST00000394059.8:ENST00000511374.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	109	2	6.04441	6.114905	6.1854	0.0149622	0.00100635	0.0835955	0.0142602
chr7	74364615	74364715	3390935	0	+	0.43	(0.419,0.45]	chr7	327281	3	SS5_PROX	SS5_PROX:INTRON	CLIP2	ENSG00000106665.16	ENST00000223398.11:ENST00000361545.9	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	6.04441	6.114905	6.1854	0.0149622	0.00100635	0.0835955	0.0142602
chr1	43983130	43983230	110993	0	+	0.54	(0.523,0.58]	chr1	13826	2	SS5_PROX	SS5_PROX:INTRON	B4GALT2	ENSG00000117411.18	ENST00000434555.7:ENST00000372324.6:ENST00000481924.2:ENST00000497866.6:ENST00000485678.6:ENST00000356836.10:ENST00000309519.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	106	2	6.02137	6.114885	6.2084	0.00992924	4.95211e-4	0.0671959	0.00865935
chr21	44866937	44867036	7678511	0	-	0.535354	(0.523,0.58]	chr21	802773	9	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	1807	2	5.05286	6.114795	7.17673	1.19603e-5	4.97243e-6	0.00135941	5.83922e-4
chr17	77484627	77484726	6805228	0	+	0.545455	(0.523,0.58]	chr17	686821	6	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	286	2	4.93902	6.11464	7.29026	0.00153345	1.95191e-5	0.0241655	8.25524e-4
chr1	150009947	150010047	585366	0	-	0.39	(0.36,0.39]	chr1	67590	1	SS5_PROX	SS5_PROX:INTRON	OTUD7B	ENSG00000264522.6	ENST00000581312.6:ENST00000417191.2	protein_coding	protein_coding	protein_coding	protein_coding	0	120	2	5.53855	6.11461	6.69067	0.00435707	0.00432809	0.0427656	0.0389438
chr9	135839059	135839159	4431137	0	-	0.51	(0.485,0.523]	chr9	423507	111	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	111	2	5.58723	6.1144300000000005	6.64163	0.0203514	1.50187e-4	0.0979211	0.0036849
chr8	80147749	80147848	4005866	0	-	0.474747	(0.45,0.485]	chr8	382863	275	INTRON	INTRON	TPD52	ENSG00000076554.16	ENST00000518937.6:ENST00000379096.9:ENST00000519303.6:ENST00000521354.5:ENST00000518517.5:ENST00000521241.6:ENST00000523753.5:ENST00000519250.5:ENST00000520795.5:ENST00000521561.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	300	2	5.07436	6.1143350000000005	7.15431	0.0013319	4.04936e-5	0.0222979	0.00140723
chr2	239347981	239348081	1392190	0	-	0.56	(0.523,0.58]	chr2	148752	235	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	242	2	4.64612	6.114255	7.58239	5.11468e-4	3.78839e-4	0.0131326	0.00719572
chr19	3530491	3530591	7191603	0	+	0.54	(0.523,0.58]	chr19	732250	3	SS3_PROX	SS3_PROX:INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	107	2	6.00701	6.11414	6.22127	0.00699217	8.61362e-4	0.0555241	0.0127848
chr16	78954118	78954218	6503960	0	+	0.42	(0.419,0.45]	chr16	645717	1738	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	114	2	5.59315	6.11387	6.63459	0.029494	3.11318e-4	0.116079	0.00624487
chr5	651494	651593	2378797	0	+	0.565657	(0.523,0.58]	chr5	237646	32	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	106	2	6.074	6.113835	6.15367	0.00906277	5.76607e-4	0.0637469	0.00963379
chr2	25811032	25811132	1109785	0	-	0.43	(0.419,0.45]	chr2	121025	43	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000497092.1	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	5.96475	6.11355	6.26235	0.0169309	8.27298e-4	0.088829	0.0124589
chr12	100084375	100084475	5481546	0	-	0.41	(0.39,0.419]	chr12	538915	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	UHRF1BP1L	ENSG00000111647.13	ENST00000279907.12:ENST00000545232.6:ENST00000356828.7:ENST00000548045.5:ENST00000551973.5:ENST00000550544.5	protein_coding	protein_coding	protein_coding	protein_coding	0	115	2	5.69518	6.113315	6.53145	0.00589503	0.00302238	0.0506158	0.0305643
chr18	10901388	10901488	7117445	0	-	0.48	(0.45,0.485]	chr18	724469	108	INTRON	INTRON	PIEZO2	ENSG00000154864.14	ENST00000302079.10:ENST00000674853.1:ENST00000383408.7:ENST00000503781.7:ENST00000580640.5:ENST00000582913.5:ENST00000686869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	108	2	5.99015	6.11312	6.23609	0.00778782	0.00110015	0.0590114	0.015136
chr19	4334940	4335039	7312820	0	-	0.545455	(0.523,0.58]	chr19	754660	5	INTRON	INTRON	STAP2	ENSG00000178078.12	ENST00000594605.6:ENST00000600324.5:ENST00000599736.5:ENST00000601482.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	110	2	5.80873	6.11303	6.41733	0.00490887	0.00145893	0.0457614	0.0184991
chr2	111421909	111422009	1252855	0	-	0.49	(0.485,0.523]	chr2	134896	436	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1	lncRNA	lncRNA	lncRNA	lncRNA	1	236	2	5.3872	6.1129750000000005	6.83875	0.00220993	4.11881e-5	0.0295736	0.00142862
chr2	226732595	226732693	1379201	0	-	0.346939	(0.33,0.36]	chr2	147289	14	UTR3	UTR3:EXON_MRNA	IRS1	ENSG00000169047.6	ENST00000305123.6	protein_coding	protein_coding	protein_coding	protein_coding	0	112	2	5.77893	6.112935	6.44694	0.00558656	0.00218403	0.0493906	0.0244273
chr7	129832491	129832589	3706518	0	-	0.489796	(0.485,0.523]	chr7	356184	19	UTR3	UTR3:EXON_MRNA	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1	protein_coding	protein_coding	protein_coding	protein_coding	3	514	2	4.60144	6.112915	7.62439	7.90292e-4	7.22501e-6	0.0167102	4.09005e-4
chr18	76423760	76423860	7179357	0	-	0.54	(0.523,0.58]	chr18	730080	431	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	106	2	5.93864	6.112715	6.28679	0.0114442	3.97355e-4	0.0723462	0.00741985
chr16	89429356	89429456	6661127	0	-	0.53	(0.523,0.58]	chr16	666747	106	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	877	2	5.56804	6.1126450000000006	6.65725	4.24604e-4	1.1908e-7	0.0118105	2.6084e-5
chr22	20770592	20770692	7767638	0	-	0.47	(0.45,0.485]	chr22	814548	45	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000466162.5:ENST00000484220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	112	2	5.75605	6.112439999999999	6.46883	0.00516809	0.002004	0.0472296	0.0230381
chr12	23949961	23950061	5388528	0	-	0.38	(0.36,0.39]	chr12	528203	3	SS3_PROX	SS3_PROX:INTRON	SOX5	ENSG00000134532.19	ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2:ENST00000536729.2:ENST00000446891.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	278	2	5.8076	6.112349999999999	6.4171	0.00699528	1.88098e-5	0.0555241	8.06081e-4
chr19	56596226	56596326	7295041	0	+	0.51	(0.485,0.523]	chr19	751227	4	INTRON	INTRON	ZNF71	ENSG00000197951.10	ENST00000328070.10:ENST00000599599.7:ENST00000594944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	106	2	6.07443	6.11225	6.15007	0.00899749	6.0909e-4	0.0637469	0.0100377
chr7	561264	561364	3523697	0	-	0.52	(0.485,0.523]	chr7	340370	94	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000400758.6	protein_coding	protein_coding	protein_coding	protein_coding	0	106	2	6.07443	6.11225	6.15007	0.00899749	6.0909e-4	0.0637469	0.0100377
chr14	49630589	49630688	5971139	0	-	0.444444	(0.419,0.45]	chr14	585048	8	INTRON	INTRON	DNAAF2	ENSG00000165506.15	ENST00000298292.13:ENST00000406043.3	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	5.93719	6.112155	6.28712	0.0176643	7.76382e-4	0.0909046	0.0118807
chr15	25016103	25016202	6064014	0	+	0.424242	(0.419,0.45]	chr15	595414	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	2	331	2	4.55726	6.11163	7.666	9.22665e-4	2.14481e-4	0.0181216	0.00476219
chr7	47348249	47348349	3587273	0	-	0.55	(0.523,0.58]	chr7	346030	15	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	108	2	5.91127	6.11149	6.31171	0.00594629	0.00111349	0.0506158	0.0152496
chr12	132531574	132531673	5352931	0	+	0.515152	(0.485,0.523]	chr12	523670	32	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	3	825	2	5.78416	6.11148	6.4388	6.65144e-5	2.48416e-6	0.00453017	1.93509e-4
chr6	7211166	7211260	2839119	0	+	0.351064	(0.33,0.36]	chr6	277962	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	241	2	5.25056	6.11146	6.97236	0.0021433	8.63635e-5	0.0291055	0.00245611
chrX	65516910	65517006	8055043	0	-	0.635417	(0.58,1]	chrX	840752	16	INTRON	INTRON	LAS1L	ENSG00000001497.18	ENST00000677056.1:ENST00000677969.1:ENST00000374811.8:ENST00000374807.9:ENST00000677834.1:ENST00000484069.1:ENST00000374804.9:ENST00000677986.1:ENST00000677087.1:ENST00000679056.1:ENST00000679261.1:ENST00000678074.1:ENST00000678705.1:ENST00000679277.1:ENST00000677154.1:ENST00000678547.1:ENST00000678956.1:ENST00000679116.1:ENST00000678848.1:ENST00000678173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	102	2	5.98322	6.1107700000000005	6.23832	0.00562007	2.24165e-4	0.0493906	0.00490779
chr2	3297097	3297197	1081078	0	-	0.52	(0.485,0.523]	chr2	117633	144	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	231	2	5.02096	6.110585	7.20021	0.00109136	1.27893e-4	0.0198839	0.00328053
chr20	10711169	10711269	7437916	0	+	0.42	(0.419,0.45]	chr20	774077	132	INTRON	INTRON	LINC01752	ENSG00000224961.3	ENST00000417299.2	lncRNA	lncRNA	lncRNA	lncRNA	0	111	2	5.72794	6.110345000000001	6.49275	0.0242188	4.54324e-4	0.106588	0.00818426
chr11	118575376	118575475	4947954	0	+	0.363636	(0.36,0.39]	chr11	477683	12	INTRON	INTRON	ARCN1	ENSG00000095139.15	ENST00000392859.7:ENST00000264028.5:ENST00000359415.8:ENST00000534182.2	protein_coding	protein_coding	protein_coding	protein_coding	0	112	2	5.80333	6.110215	6.4171	0.00699528	0.00231859	0.0555241	0.0255753
chr10	29507541	29507641	4656398	0	-	0.43	(0.419,0.45]	chr10	444616	79	INTRON	INTRON	SVIL	ENSG00000197321.16	ENST00000375400.7:ENST00000355867.9:ENST00000375398.6:ENST00000674475.1:ENST00000632315.1:ENST00000491872.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	122	2	5.32195	6.1101849999999995	6.89842	0.0431627	1.51593e-4	0.138403	0.00370696
chrX	47220584	47220682	7877809	0	+	0.55102	(0.523,0.58]	chrX	825683	11	INTRON	INTRON	CDK16	ENSG00000102225.17	ENST00000517997.5:ENST00000517479.1:ENST00000457458.6:ENST00000522883.1:ENST00000520295.5:ENST00000357227.9:ENST00000519758.5:ENST00000520893.5:ENST00000517426.5:ENST00000522234.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	107	2	5.9758	6.11011	6.24442	0.00670944	9.36996e-4	0.0541591	0.0135546
chr4	2826595	2826686	2000385	0	+	0.516484	(0.485,0.523]	chr4	203975	4	EXON_MRNA	EXON_MRNA:INTRON	SH3BP2	ENSG00000087266.17	ENST00000503393.8:ENST00000504294.5:ENST00000508385.5:ENST00000511663.5:ENST00000512014.5:ENST00000435136.8:ENST00000511185.5:ENST00000511747.6:ENST00000356331.9:ENST00000515737.5:ENST00000515183.5:ENST00000505941.5:ENST00000510204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	231	2	5.1694	6.110005	7.05061	0.00146547	8.11658e-5	0.023492	0.00234258
chr5	1327222	1327320	2609087	0	-	0.5	(0.485,0.523]	chr5	259719	9	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	239	2	5.47542	6.109935	6.74445	0.00264613	3.11839e-5	0.032596	0.00115919
chr5	81250889	81250989	2713737	0	-	0.4	(0.39,0.419]	chr5	267196	1	SS3_PROX	SS3_PROX:INTRON	CKMT2-AS1	ENSG00000247572.9	ENST00000663674.1:ENST00000503483.6:ENST00000511495.1:ENST00000512287.1:ENST00000502041.3:ENST00000690798.1:ENST00000670957.1:ENST00000660242.1:ENST00000500148.6:ENST00000669977.1:ENST00000656836.1:ENST00000501927.2:ENST00000505295.1	lncRNA	lncRNA	lncRNA	lncRNA	0	108	2	6.05225	6.10976	6.16727	0.0130948	9.41833e-4	0.0782739	0.0135546
chr16	89431526	89431626	6661149	0	-	0.47	(0.45,0.485]	chr16	666752	2	SS3_PROX	SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	235	2	5.1387	6.1096900000000005	7.08068	0.00166658	1.03499e-4	0.0252632	0.00280721
chr3	129454537	129454631	1566435	0	+	0.457447	(0.45,0.485]	chr3	165748	11	INTRON	INTRON	IFT122	ENSG00000163913.14	ENST00000693654.1:ENST00000687461.1:ENST00000440957.7:ENST00000688129.1:ENST00000689313.1:ENST00000689801.1:ENST00000691583.1:ENST00000347300.6:ENST00000685282.1:ENST00000692242.1:ENST00000687377.1:ENST00000693489.1:ENST00000687645.1:ENST00000689643.1:ENST00000688970.1:ENST00000512157.6:ENST00000692228.1:ENST00000693114.1:ENST00000690862.1:ENST00000689332.1:ENST00000685921.1:ENST00000691770.1:ENST00000692985.1:ENST00000685447.1:ENST00000693162.1:ENST00000692391.1:ENST00000686531.1:ENST00000693129.1:ENST00000689796.1:ENST00000685939.1:ENST00000686830.1:ENST00000687791.1:ENST00000686473.1:ENST00000690723.1:ENST00000689871.1:ENST00000688504.1:ENST00000691964.1:ENST00000686375.1:ENST00000691733.1:ENST00000691705.1:ENST00000690209.1:ENST00000687864.1:ENST00000689819.1:ENST00000296266.7:ENST00000689492.1:ENST00000687398.1:ENST00000690663.1:ENST00000693588.1:ENST00000690677.1:ENST00000688664.1:ENST00000431818.8:ENST00000507564.5:ENST00000693233.1:ENST00000504021.6:ENST00000348417.7:ENST00000692901.1:ENST00000515783.6:ENST00000688020.1:ENST00000512220.5:ENST00000349441.6:ENST00000689005.1:ENST00000691641.1:ENST00000692321.1:ENST00000685087.1:ENST00000692728.1:ENST00000691360.1:ENST00000685189.1:ENST00000687766.1:ENST00000687845.1:ENST00000692508.1:ENST00000506507.5:ENST00000509815.1:ENST00000509195.5:ENST00000502304.5:ENST00000502456.5:ENST00000510524.5:ENST00000690617.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	237	2	4.87037	6.109345	7.34832	9.95275e-4	2.29543e-4	0.0189547	0.00498593
chr1	85464042	85464142	520002	0	-	0.45	(0.419,0.45]	chr1	61355	289	INTRON	INTRON	DDAH1	ENSG00000153904.21	ENST00000426972.8:ENST00000284031.13	protein_coding	protein_coding	protein_coding	protein_coding	1	248	2	4.82934	6.109275	7.38921	0.00152802	3.59889e-4	0.0240842	0.00693803
chr1	61441277	61441374	149713	0	+	0.536082	(0.523,0.58]	chr1	17241	14	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000407417.7:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1:ENST00000657234.1:ENST00000655770.1:ENST00000357977.5:ENST00000493627.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	280	2	4.77202	6.109215000000001	7.44641	0.00213667	1.18895e-5	0.0290853	5.81984e-4
chr19	37218915	37219002	7252062	0	+	0.448276	(0.419,0.45]	chr19	743297	2	SS3_PROX	SS3_PROX:INTRON	ZNF383	ENSG00000188283.12	ENST00000586068.5:ENST00000585441.5:ENST00000586658.1:ENST00000590503.5:ENST00000684119.1:ENST00000589413.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	110	2	5.79088	6.109145	6.42741	0.022052	5.39517e-4	0.101502	0.00920925
chr7	17333511	17333611	3327106	0	+	0.37	(0.36,0.39]	chr7	322123	2	SS3_PROX	SS3_PROX:INTRON	AHR	ENSG00000106546.14	ENST00000642825.1:ENST00000242057.9:ENST00000463496.1:ENST00000475440.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	108	2	5.9463800000000004	6.108890000000001	6.2714	0.0151971	7.13729e-4	0.084474	0.0112151
chr8	128040579	128040677	3920287	0	+	0.459184	(0.45,0.485]	chr8	374321	3	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	1	316	2	3.94271	6.108815	8.27492	0.0110873	1.19337e-6	0.0712729	1.17e-4
chr7	26725327	26725427	3556997	0	-	0.41	(0.39,0.419]	chr7	343616	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SKAP2	ENSG00000005020.13	ENST00000345317.7:ENST00000489977.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	118	2	5.57892	6.108750000000001	6.63858	0.00489861	0.00396694	0.0457614	0.0368027
chr5	650004	650103	2378782	0	+	0.565657	(0.523,0.58]	chr5	237646	17	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	284	2	4.34083	6.108605000000001	7.87638	0.00492048	2.95188e-6	0.0458505	2.17437e-4
chr12	32847485	32847584	5410058	0	-	0.50505	(0.485,0.523]	chr12	529795	38	INTRON	INTRON	PKP2	ENSG00000057294.16	ENST00000070846.11:ENST00000340811.9	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	5.84014	6.108285	6.37643	0.0052506	0.00139792	0.0476984	0.0179863
chr14	103105572	103105661	5921874	0	+	0.573034	(0.523,0.58]	chr14	579221	1	INTRON	INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	603	2	5.80049	6.107715	6.41494	2.61203e-4	1.36636e-6	0.00915319	1.28697e-4
chr3	10191887	10191987	1406797	0	+	0.47	(0.45,0.485]	chr3	151140	135	INTRON	INTRON	IRAK2	ENSG00000134070.5	ENST00000256458.5	protein_coding	protein_coding	protein_coding	protein_coding	1	254	2	4.48652	6.1076999999999995	7.72888	6.88779e-4	4.70072e-4	0.012528	0.0109212
chr7	45735590	45735689	3586180	0	-	0.474747	(0.45,0.485]	chr7	345891	62	INTRON	INTRON	SEPTIN7P2	ENSG00000214765.9	ENST00000338231.8:ENST00000688931.1:ENST00000429741.5:ENST00000689783.1:ENST00000693141.1:ENST00000684893.1:ENST00000690171.1:ENST00000428414.5:ENST00000686085.1:ENST00000686032.1:ENST00000691119.1:ENST00000688953.1:ENST00000690342.1:ENST00000690179.1:ENST00000413875.6:ENST00000689506.1:ENST00000691450.1:ENST00000687862.1:ENST00000686398.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	0	110	2	5.8269	6.10769	6.38848	0.0059625	0.00167585	0.0506812	0.0203806
chr16	12260743	12260842	6392476	0	+	0.646465	(0.58,1]	chr16	631965	607	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	106	2	5.59447	6.107655	6.62084	0.0117666	6.67603e-5	0.0737098	0.00202861
chr3	14416211	14416311	1415109	0	+	0.58	(0.523,0.58]	chr3	151906	4	SS3_PROX	SS3_PROX:INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000613930.4:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	111	2	5.55012	6.107535	6.66495	0.0217068	1.32802e-4	0.100615	0.00337193
chr19	15644251	15644351	7215396	0	+	0.61	(0.58,1]	chr19	737138	2	SS5_PROX	SS5_PROX:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	110	2	5.63543	6.10745	6.57947	0.00165065	0.00131165	0.0250898	0.0171898
chr6	144690028	144690128	3023970	0	+	0.41	(0.39,0.419]	chr6	295451	111	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000367526.8	protein_coding	protein_coding	protein_coding	protein_coding	0	110	2	5.90288	6.10727	6.31166	0.00855563	0.00183094	0.0621561	0.0216571
chr3	119824266	119824364	1884352	0	-	0.438776	(0.419,0.45]	chr3	191195	31	UTR3	UTR3:EXON_MRNA	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1	protein_coding	protein_coding	protein_coding	protein_coding	2	410	2	4.09088	6.106985	8.12309	0.00503199	4.3211e-6	0.0464858	2.84036e-4
chr18	74916718	74916818	7092449	0	+	0.51	(0.485,0.523]	chr18	722466	109	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	1	239	2	4.68505	6.10616	7.52727	5.66104e-4	3.4873e-4	0.0138751	0.00674746
chr15	85601610	85601710	6178429	0	+	0.4	(0.39,0.419]	chr15	607582	154	INTRON	INTRON	AKAP13	ENSG00000170776.22	ENST00000559362.5:ENST00000394518.7:ENST00000361243.6:ENST00000560340.5	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	5.7987	6.10607	6.41344	0.0195328	4.94825e-4	0.0955413	0.00865935
chr7	30160597	30160696	3338876	0	+	0.40404	(0.39,0.419]	chr7	323119	32	UTR3	UTR3:EXON_MRNA	MTURN	ENSG00000180354.16	ENST00000324453.13:ENST00000324489.5	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	5.7987	6.10607	6.41344	0.0195328	4.94825e-4	0.0955413	0.00865935
chr22	25192405	25192503	7700967	0	+	0.561224	(0.523,0.58]	chr22	805949	1	UTR3	UTR3:EXON_MRNA	KIAA1671	ENSG00000197077.14	ENST00000358431.8:ENST00000406486.8:ENST00000401395.1:ENST00000637069.1	protein_coding	protein_coding	protein_coding	protein_coding	0	124	2	5.16969	6.105685	7.04168	0.0387762	4.24161e-5	0.131324	0.00145737
chr7	105247513	105247613	3666567	0	-	0.32	(0.29,0.33]	chr7	353719	406	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	106	2	5.85815	6.1051400000000005	6.35213	0.011855	3.72808e-4	0.0740271	0.00708918
chrX	74244293	74244392	8068708	0	-	0.252525	[0,0.29]	chrX	841746	15	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1	lncRNA	lncRNA	lncRNA	lncRNA	1	230	2	4.71277	6.105119999999999	7.49747	2.70354e-4	2.47485e-4	0.00889269	0.0056322
chr12	124858081	124858181	5537295	0	-	0.55	(0.523,0.58]	chr12	546095	400	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000415380.6:ENST00000681117.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000539320.3:ENST00000545493.1:ENST00000541661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	257	2	4.38556	6.1049500000000005	7.82434	8.02365e-4	3.11537e-4	0.0121806	0.0100453
chr10	31459836	31459936	4473161	0	+	0.36	(0.33,0.36]	chr10	427907	698	INTRON	INTRON	ZEB1	ENSG00000148516.23	ENST00000488625.6:ENST00000560196.5:ENST00000542879.5:ENST00000561304.5:ENST00000320985.14:ENST00000560721.6:ENST00000559858.5:ENST00000558440.5:ENST00000437844.6:ENST00000424869.6:ENST00000542815.7:ENST00000558863.5:ENST00000561212.5:ENST00000558655.5:ENST00000561061.5:ENST00000559496.5:ENST00000446923.7:ENST00000557827.5:ENST00000606671.5:ENST00000606161.1:ENST00000493835.5:ENST00000560909.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	107	2	6.09559	6.10492	6.11425	0.00993822	9.809e-4	0.0672261	0.0140347
chr9	4713792	4713890	4269908	0	-	0.510204	(0.485,0.523]	chr9	407900	3	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	2	615	2	5.45292	6.104705	6.75649	5.34852e-4	4.62738e-7	0.0134768	6.30803e-5
chr10	44969264	44969364	4483221	0	+	0.51	(0.485,0.523]	chr10	428600	90	INTRON	INTRON	RASSF4	ENSG00000107551.21	ENST00000489171.5:ENST00000340258.10:ENST00000427758.5:ENST00000483709.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	106	2	5.8513	6.1044149999999995	6.35753	0.0131886	3.41236e-4	0.0785398	0.00667174
chr6	125071469	125071569	3000659	0	+	0.43	(0.419,0.45]	chr6	293535	130	INTRON	INTRON	RNF217	ENSG00000146373.17	ENST00000521654.7:ENST00000560949.5:ENST00000519565.5:ENST00000368414.6:ENST00000359704.2:ENST00000432158.6:ENST00000368415.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	111	2	5.86184	6.1040849999999995	6.34633	0.00923958	0.00223565	0.0644666	0.024843
chr2	119787066	119787166	883863	0	+	0.47	(0.45,0.485]	chr2	100104	151	INTRON	INTRON	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000460162.1:ENST00000420482.5:ENST00000460289.5:ENST00000488279.6:ENST00000485247.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	112	2	5.71928	6.10376	6.48824	0.00499158	0.00219685	0.0463896	0.0245167
chr10	99806040	99806134	4567435	0	+	0.404255	(0.39,0.419]	chr10	435843	2	INTRON	INTRON	ABCC2	ENSG00000023839.12	ENST00000647814.1	protein_coding	protein_coding	protein_coding	protein_coding	0	115	2	5.65745	6.10366	6.54987	0.00571127	0.00330348	0.0498083	0.0323993
chr13	97339325	97339425	5631977	0	+	0.55	(0.523,0.58]	chr13	553188	45	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	314	2	4.99564	6.103605	7.21157	0.00107726	3.12505e-5	0.0197563	0.00116064
chr1	204225783	204225883	645040	0	-	0.4	(0.39,0.419]	chr1	76439	18	INTRON	INTRON	PLEKHA6	ENSG00000143850.16	ENST00000272203.8:ENST00000637508.1:ENST00000414478.1	protein_coding	protein_coding	protein_coding	protein_coding	0	112	2	5.60095	6.102455	6.60396	0.0263614	2.96245e-4	0.110638	0.00602194
chr5	123542819	123542919	2523781	0	+	0.37	(0.36,0.39]	chr5	250487	299	INTRON	INTRON	CSNK1G3	ENSG00000151292.18	ENST00000345990.9:ENST00000508708.1:ENST00000512718.7:ENST00000511130.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	109	2	5.93533	6.102265	6.2692	0.00897657	0.00167855	0.0637469	0.0203806
chr6	35404889	35404989	2903843	0	+	0.55	(0.523,0.58]	chr6	284769	69	INTRON	INTRON	PPARD	ENSG00000112033.14	ENST00000418635.6:ENST00000448077.6:ENST00000360694.8:ENST00000311565.4:ENST00000337400.6	protein_coding	protein_coding	protein_coding	protein_coding	0	115	2	5.5788	6.1022	6.6256	0.00333843	0.00262418	0.0368376	0.0278348
chr3	44476392	44476492	1755923	0	-	0.44	(0.419,0.45]	chr3	180946	177	INTRON	INTRON	ZNF445	ENSG00000185219.18	ENST00000396077.8:ENST00000474600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	109	2	5.98805	6.101415	6.21478	0.011428	0.00164584	0.0723462	0.0202325
chr7	74500699	74500799	3391834	0	+	0.45	(0.419,0.45]	chr7	327343	462	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	5.98805	6.101415	6.21478	0.011428	0.00164584	0.0723462	0.0202325
chr19	3527814	3527914	7191576	0	+	0.65	(0.58,1]	chr19	732247	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	112	2	5.54978	6.1012450000000005	6.65271	0.00165911	0.00141059	0.0229261	0.0202545
chrX	1397224	1397324	7830133	0	+	0.6	(0.58,1]	chrX	822053	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LINC00106	ENSG00000236871.7	ENST00000434938.7:ENST00000430235.7	lncRNA	lncRNA	lncRNA	lncRNA	1	213	2	5.00585	6.101229999999999	7.19661	4.22825e-4	7.40898e-5	0.011772	0.00219184
chr2	3299992	3300091	1081107	0	-	0.50505	(0.485,0.523]	chr2	117633	173	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	109	2	5.80515	6.101195000000001	6.39724	0.00505512	0.00153111	0.0465263	0.0191213
chr1	180682811	180682911	296902	0	+	0.41	(0.39,0.419]	chr1	33790	4	SS5_PROX	SS5_PROX:INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	0	108	2	6.0264	6.101185	6.17597	0.0107103	0.00134695	0.0701493	0.0174765
chr2	215974608	215974708	1369029	0	-	0.42	(0.419,0.45]	chr2	145838	271	INTRON	INTRON	MREG	ENSG00000118242.16	ENST00000263268.11:ENST00000620139.4:ENST00000439791.5:ENST00000424992.5:ENST00000420348.1	protein_coding	protein_coding	protein_coding	protein_coding	0	112	2	5.79433	6.101100000000001	6.40787	0.00835435	0.00262626	0.0613588	0.0278348
chr7	98116372	98116472	3423498	0	+	0.53	(0.523,0.58]	chr7	330518	87	INTRON	INTRON	LMTK2	ENSG00000164715.6	ENST00000297293.6	protein_coding	protein_coding	protein_coding	protein_coding	1	229	2	4.96557	6.10022	7.23487	0.00102861	1.45873e-4	0.0192522	0.0036118
chr19	3529895	3529994	7191597	0	+	0.585859	(0.58,1]	chr19	732249	17	INTRON	INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	104	2	5.86553	6.09995	6.33437	0.00276493	6.8352e-4	0.0332418	0.0108717
chr5	1053882	1053982	2608359	0	-	0.57	(0.523,0.58]	chr5	259537	4	SS3_PROX	SS3_PROX:INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10:ENST00000634447.1	protein_coding	protein_coding	protein_coding	protein_coding	0	105	2	5.93864	6.0998850000000004	6.26113	0.0114442	4.27166e-4	0.0723462	0.00779962
chr17	43568900	43569000	6739254	0	+	0.41	(0.39,0.419]	chr17	678633	237	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	247	2	5.3525	6.09952	6.84654	0.00339831	7.36238e-5	0.0373002	0.00218383
chr17	315138	315237	6821427	0	-	0.575758	(0.523,0.58]	chr17	689582	86	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	108	2	5.84373	6.09931	6.35489	0.00549977	0.00133116	0.0489559	0.0173248
chrX	2383560	2383660	7967679	0	-	0.37	(0.36,0.39]	chrX	834355	452	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	108	2	5.83054	6.09928	6.36802	0.0182399	5.53634e-4	0.0921579	0.00941672
chr17	2236696	2236737	6834329	0	-	0.487805	(0.485,0.523]	chr17	691117	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11:ENST00000354901.8:ENST00000536871.6:ENST00000571442.5:ENST00000570659.5:ENST00000575663.5:ENST00000570606.5:ENST00000570668.1	protein_coding	protein_coding	protein_coding	protein_coding	0	105	2	6.04835	6.09921	6.15007	0.00941539	6.0909e-4	0.0653252	0.0100377
chrX	6916234	6916334	7974343	0	-	0.47	(0.45,0.485]	chrX	834743	1948	INTRON	INTRON	PUDP	ENSG00000130021.15	ENST00000655425.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	108	2	5.89443	6.098905	6.30338	0.00692617	0.00141013	0.0553898	0.0180659
chr20	23634853	23634953	7537531	0	-	0.45	(0.419,0.45]	chr20	786641	2	SS5_PROX	SS5_PROX:INTRON	CST3	ENSG00000101439.9	ENST00000398411.5:ENST00000398409.1:ENST00000376925.8	protein_coding	protein_coding	protein_coding	protein_coding	5	1480	2	5.95702	6.09858	6.24014	1.5223e-4	6.64599e-7	0.00689544	8.02564e-5
chr7	47475507	47475607	3588563	0	-	0.74	(0.58,1]	chr7	346123	224	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	212	2	5.2395	6.098445	6.95739	7.23847e-4	3.37223e-5	0.0158739	0.0012296
chr7	76998218	76998318	3398782	0	+	0.61	(0.58,1]	chr7	328286	75	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	106	2	5.75506	6.098325	6.44159	0.00221069	9.38062e-4	0.0295736	0.0135546
chr12	132532768	132532868	5352943	0	+	0.72	(0.58,1]	chr12	523670	44	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	2	282	2	4.79477	6.09826	7.40175	2.64397e-4	3.16902e-5	0.00920003	0.00117282
chr19	17145591	17145691	7218902	0	+	0.47	(0.45,0.485]	chr19	737730	1	SS5_PROX	SS5_PROX:INTRON	MYO9B	ENSG00000099331.14	ENST00000682292.1:ENST00000595618.5:ENST00000594824.5:ENST00000397274.6:ENST00000595641.5	protein_coding	protein_coding	protein_coding	protein_coding	0	106	2	6.0799	6.09818	6.11646	0.00956667	8.68466e-4	0.0658012	0.0128564
chr3	62178122	62178222	1492787	0	+	0.51	(0.485,0.523]	chr3	160128	96	INTRON	INTRON	PTPRG	ENSG00000144724.20	ENST00000474889.6:ENST00000295874.14	protein_coding	protein_coding	protein_coding	protein_coding	1	231	2	5.28241	6.097645	6.91288	0.00191584	5.71751e-5	0.0274102	0.00180869
chr3	140958962	140959062	1585945	0	+	0.42	(0.419,0.45]	chr3	167515	1	SS3_PROX	SS3_PROX:INTRON	SLC25A36	ENSG00000114120.14	ENST00000446041.6:ENST00000324194.12:ENST00000648615.1:ENST00000393015.8:ENST00000515813.1:ENST00000507429.5:ENST00000502594.5:ENST00000453248.6:ENST00000631654.1:ENST00000513887.5:ENST00000512023.5:ENST00000512506.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	109	2	5.95751	6.09753	6.23755	0.0110181	0.0017735	0.0708586	0.02121
chr11	70585229	70585329	5060125	0	-	0.54	(0.523,0.58]	chr11	492663	819	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	111	2	5.69834	6.09746	6.49658	0.00424382	0.00194036	0.0422099	0.0225083
chr11	70763368	70763468	5061915	0	-	0.61	(0.58,1]	chr11	492701	455	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	212	2	5.03539	6.09739	7.15939	4.60046e-4	6.71442e-5	0.0123493	0.00203475
chr22	25487525	25487625	7701419	0	+	0.52	(0.485,0.523]	chr22	805972	260	INTRON	INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000686640.1:ENST00000509460.3:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	131	2	5.19749	6.097285	6.99708	0.00672953	0.00162697	0.0519464	0.0249683
chr8	125001336	125001431	3914610	0	+	0.442105	(0.419,0.45]	chr8	373955	9	INTRON	INTRON	SQLE	ENSG00000104549.12	ENST00000523430.5:ENST00000265896.10:ENST00000521232.1	protein_coding	protein_coding	protein_coding	protein_coding	0	119	2	5.52959	6.09715	6.66471	0.00544202	0.00484244	0.0486855	0.0418176
chr1	21642970	21643070	419898	0	-	0.5	(0.485,0.523]	chr1	49018	162	INTRON	INTRON	RAP1GAP	ENSG00000076864.21	ENST00000374765.9:ENST00000471600.6:ENST00000542643.6:ENST00000611549.4:ENST00000495204.5:ENST00000374757.7:ENST00000317967.11:ENST00000447293.5:ENST00000482984.5:ENST00000464457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	106	2	5.97221	6.0969549999999995	6.2217	0.00693912	9.86421e-4	0.0553898	0.0140716
chr17	82150659	82150759	6987880	0	-	0.61	(0.58,1]	chr17	714577	149	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000419322.6:ENST00000392346.6:ENST00000582040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	101	2	6.01134	6.09692	6.1825	0.00531709	2.66047e-4	0.047841	0.00556524
chr19	3528808	3528907	7191586	0	+	0.535354	(0.523,0.58]	chr19	732249	6	INTRON	INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	110	2	5.73609	6.096795	6.4575	0.0045605	0.0017613	0.0438198	0.0211077
chr8	66749838	66749937	3837340	0	+	0.383838	(0.36,0.39]	chr8	368415	123	INTRON	INTRON	SGK3	ENSG00000104205.16	ENST00000523401.5:ENST00000521198.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	110	2	5.83748	6.09652	6.35556	0.0077647	0.00213426	0.0589564	0.0240825
chr1	214006663	214006762	339545	0	+	0.444444	(0.419,0.45]	chr1	38103	10	INTRON	INTRON	PROX1	ENSG00000117707.16	ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2	protein_coding	protein_coding	protein_coding	protein_coding	0	115	2	5.4831	6.096450000000001	6.7098	0.0345118	2.54121e-4	0.126025	0.00539144
chr6	158019590	158019690	3059688	0	+	0.64	(0.58,1]	chr6	297373	14	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	0	101	2	6.03893	6.0963449999999995	6.15376	0.00503456	2.90409e-4	0.0464858	0.0059241
chr2	99386418	99386518	858084	0	+	0.41	(0.39,0.419]	chr2	97211	31	INTRON	INTRON	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11	protein_coding	protein_coding	protein_coding	protein_coding	0	107	2	6.05225	6.09621	6.14017	0.0130948	0.00100955	0.0782739	0.0142887
chr10	18567860	18567960	4642407	0	-	0.38	(0.36,0.39]	chr10	443321	155	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	107	2	6.07922	6.096175000000001	6.11313	0.0122748	0.00107374	0.0755611	0.0148869
chr2	7039228	7039328	712664	0	+	0.46	(0.45,0.485]	chr2	83317	2	SS3_PROX	SS3_PROX:INTRON	RNF144A	ENSG00000151692.15	ENST00000320892.11:ENST00000467276.5:ENST00000432850.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	117	2	5.34301	6.095805	6.8486	0.0328801	1.00721e-4	0.122593	0.00275456
chr6	87160431	87160530	2950094	0	+	0.363636	(0.36,0.39]	chr6	290360	43	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000392985.3:ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	241	2	4.88696	6.09544	7.30392	0.00143567	2.78875e-4	0.0232366	0.00577243
chr12	131779224	131779323	5351502	0	+	0.686869	(0.58,1]	chr12	523423	5	INTRON	INTRON	SFSWAP	ENSG00000061936.10	ENST00000261674.9:ENST00000538548.5:ENST00000541286.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	101	2	6.06599	6.095215	6.12444	0.00477081	3.17437e-4	0.0450109	0.00632787
chr18	74623182	74623281	7089503	0	+	0.494949	(0.485,0.523]	chr18	722412	249	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000582337.5	protein_coding	protein_coding	protein_coding	protein_coding	0	105	2	5.88115	6.094775	6.3084	0.012541	3.92049e-4	0.0761905	0.00735595
chr1	28963344	28963444	76767	0	+	0.37	(0.36,0.39]	chr1	8738	482	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	107	2	6.08498	6.09468	6.10438	0.0117824	0.00115345	0.073726	0.0157112
chr4	888450	888549	2178487	0	-	0.535354	(0.523,0.58]	chr4	220626	28	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	106	2	5.75742	6.09463	6.43184	0.0155135	2.62665e-4	0.0849828	0.00552802
chr17	7174460	7174560	6847815	0	-	0.67	(0.58,1]	chr17	693455	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1	protein_coding	protein_coding	protein_coding	protein_coding	3	709	2	5.37494	6.094614999999999	6.81429	1.00834e-4	1.15519e-7	0.00560072	2.58336e-5
chr16	14945173	14945273	6403104	0	+	0.52	(0.485,0.523]	chr16	632687	2	SS3_PROX	SS3_PROX:INTRON	NPIPA1	ENSG00000183426.17	ENST00000472413.5:ENST00000541836.5:ENST00000545831.5:ENST00000328085.10:ENST00000424549.7:ENST00000545479.5:ENST00000534720.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	105	2	6.06388	6.094545	6.12521	0.00823189	7.70737e-4	0.0608959	0.0118331
chr6	16684927	16685027	3103694	0	-	0.33	(0.29,0.33]	chr6	300893	170	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6:ENST00000495178.1:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	107	2	5.69884	6.09453	6.49022	0.0155382	2.52154e-4	0.0849828	0.00535512
chr12	31283866	31283965	5405632	0	-	0.353535	(0.33,0.36]	chr12	529415	6	INTRON	INTRON	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000448582.6:ENST00000454658.6:ENST00000544921.5:ENST00000542983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	106	2	6.0374	6.09438	6.15136	0.0113089	8.48155e-4	0.0722887	0.0126615
chr11	64271112	64271212	5049349	0	-	0.55	(0.523,0.58]	chr11	490332	1	SS5_PROX	SS5_PROX:INTRON	BAD	ENSG00000002330.14	ENST00000309032.8:ENST00000394532.7:ENST00000544785.1:ENST00000394531.3:ENST00000493798.1:ENST00000492141.1	protein_coding	protein_coding	protein_coding	protein_coding	0	106	2	5.94389	6.094155	6.24442	0.00670944	0.0010207	0.0541591	0.0143498
chr19	322835	322935	7303104	0	-	0.53	(0.523,0.58]	chr19	752407	88	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	5.49322	6.093835	6.69445	0.00324246	0.00293287	0.0343709	0.0319521
chr12	28250866	28250966	5195185	0	+	0.31	(0.29,0.33]	chr12	505393	243	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000544780.5:ENST00000543534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	106	2	5.76469	6.093755	6.42282	0.0139072	3.05448e-4	0.0805904	0.00616054
chr21	43958135	43958235	7625365	0	+	0.33	(0.29,0.33]	chr21	796924	25	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000448845.1:ENST00000422850.5:ENST00000546158.1	protein_coding	protein_coding	protein_coding	protein_coding	0	106	2	5.76469	6.093755	6.42282	0.0139072	3.05448e-4	0.0805904	0.00616054
chr1	42181716	42181816	454988	0	-	0.4	(0.39,0.419]	chr1	54692	4	SS5_PROX	SS5_PROX:INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000372571.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6	protein_coding	protein_coding	protein_coding	protein_coding	0	107	2	6.08441	6.0937149999999995	6.10302	0.0120635	0.00116356	0.0745226	0.0157899
chr1	1108364	1108463	380266	0	-	0.59596	(0.58,1]	chr1	42816	11	INTRON	INTRON	C1orf159	ENSG00000131591.18	ENST00000379339.5:ENST00000379325.7:ENST00000421241.7:ENST00000467751.5:ENST00000477196.5:ENST00000434641.5:ENST00000482816.5:ENST00000462097.5:ENST00000475119.5:ENST00000472741.5:ENST00000480643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	234	2	5.80874	6.09348	6.37822	0.00252415	4.61817e-6	0.031696	2.97736e-4
chr14	95233331	95233431	6047979	0	-	0.48	(0.45,0.485]	chr14	593419	28	INTRON	INTRON	CLMN	ENSG00000165959.12	ENST00000298912.9:ENST00000555336.6:ENST00000555615.1:ENST00000553733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	107	2	5.74913	6.09343	6.43773	0.017574	3.27319e-4	0.0906595	0.00645438
chr22	28918280	28918380	7705624	0	+	0.47	(0.45,0.485]	chr22	806321	4	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7:ENST00000402174.5	protein_coding	protein_coding	protein_coding	protein_coding	1	234	2	5.23999	6.093389999999999	6.94679	0.00214762	7.62126e-5	0.0291055	0.00224403
chr13	98268700	98268800	5634918	0	+	0.51	(0.485,0.523]	chr13	553480	235	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	1	338	2	5.56489	6.093275	6.62166	4.23959e-4	1.59261e-4	0.0117967	0.00385073
chr8	124690062	124690162	4064559	0	-	0.5	(0.485,0.523]	chr8	387132	167	INTRON	INTRON	MTSS1	ENSG00000170873.19	ENST00000518547.6:ENST00000378017.7:ENST00000325064.9:ENST00000522162.1	protein_coding	protein_coding	protein_coding	protein_coding	0	107	2	5.87431	6.093225	6.31214	0.00589975	0.00127835	0.0506158	0.0168904
chr3	52238393	52238491	1777962	0	-	0.479592	(0.45,0.485]	chr3	184837	23	INTRON	INTRON	TWF2	ENSG00000247596.10	ENST00000305533.10:ENST00000678838.1:ENST00000679296.1:ENST00000676989.1:ENST00000678549.1:ENST00000678700.1:ENST00000676800.1:ENST00000677127.1:ENST00000678681.1:ENST00000499914.2:ENST00000472755.2:ENST00000678330.1:ENST00000676988.1:ENST00000677058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	106	2	6.02069	6.0931	6.16551	0.00879664	0.00101549	0.0630845	0.0143256
chr4	869565	869663	2178288	0	-	0.479592	(0.45,0.485]	chr4	220580	10	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	106	2	6.02069	6.0931	6.16551	0.00879664	0.00101549	0.0630845	0.0143256
chr19	3529005	3529104	7191588	0	+	0.585859	(0.58,1]	chr19	732249	8	INTRON	INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	104	2	5.82964	6.09305	6.35646	0.00264106	7.58111e-4	0.0325876	0.0117078
chr7	893339	893439	3307718	0	+	0.64	(0.58,1]	chr7	320475	2	SS3_PROX	SS3_PROX:INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000407192.5:ENST00000464468.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	104	2	5.82964	6.09305	6.35646	0.00264106	7.58111e-4	0.0325876	0.0117078
chr1	53246922	53247017	485998	0	-	0.494737	(0.485,0.523]	chr1	57820	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	LRP8	ENSG00000157193.18	ENST00000306052.12:ENST00000661457.1:ENST00000668448.1:ENST00000667377.1:ENST00000658277.1:ENST00000653810.1:ENST00000657047.1:ENST00000662198.1:ENST00000657895.1:ENST00000668071.1:ENST00000529670.6:ENST00000480045.6:ENST00000654834.1:ENST00000653217.1:ENST00000669432.1:ENST00000465675.6:ENST00000662802.1:ENST00000371454.6:ENST00000662604.1:ENST00000354412.7:ENST00000658404.1:ENST00000668991.1:ENST00000656486.1:ENST00000654947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	106	2	5.75784	6.093035	6.42823	0.0154142	2.78987e-4	0.0849828	0.00577243
chr1	1052016	1052112	1284	0	+	0.666667	(0.58,1]	chr1	283	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	252	2	4.85024	6.0926	7.33496	0.00100106	5.99783e-6	0.0190404	3.5765e-4
chr10	117342400	117342500	4770526	0	-	0.36	(0.33,0.36]	chr10	455983	9	INTRON	INTRON	PDZD8	ENSG00000165650.12	ENST00000334464.7:ENST00000489491.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	106	2	5.92813	6.09248	6.25683	0.0135535	6.42061e-4	0.0793558	0.0104165
chr14	69638330	69638430	5869661	0	+	0.49	(0.485,0.523]	chr14	573213	227	INTRON	INTRON	SUSD6	ENSG00000100647.8	ENST00000342745.5	protein_coding	protein_coding	protein_coding	protein_coding	0	105	2	6.03396	6.091950000000001	6.14994	0.00788098	8.35707e-4	0.059464500000000003	0.012554
chr19	47721075	47721174	7278832	0	+	0.494949	(0.485,0.523]	chr19	747648	21	INTRON	INTRON	ENSG00000268746:EHD2	ENSG00000268746.1:ENSG00000024422.12	ENST00000599924.1:ENST00000263277.8:ENST00000538399.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	114	2	5.57523	6.091760000000001	6.60829	0.00342137	0.00274261	0.0374749	0.028553
chr20	34949972	34950063	7550266	0	-	0.406593	(0.39,0.419]	chr20	788207	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	GSS	ENSG00000100983.12	ENST00000651619.1:ENST00000646735.1:ENST00000646405.1:ENST00000642498.1:ENST00000643908.1:ENST00000645723.1:ENST00000643188.1:ENST00000644793.1:ENST00000646512.1:ENST00000643443.1:ENST00000451957.2:ENST00000642538.1:ENST00000642493.1:ENST00000646502.1:ENST00000646766.1:ENST00000643271.1:ENST00000644197.1:ENST00000643690.1:ENST00000645102.1:ENST00000643628.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	107	2	6.05569	6.0917200000000005	6.12775	0.0115883	0.0012512	0.0731017	0.0166412
chr17	17728257	17728357	6689318	0	+	0.57	(0.523,0.58]	chr17	671344	37	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	105	2	5.82039	6.090764999999999	6.36114	0.0139724	3.21725e-4	0.0805959	0.0063695
chr2	3296399	3296499	1081071	0	-	0.59	(0.58,1]	chr2	117633	137	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	212	2	4.96039	6.090645	7.2209	4.00118e-4	8.61583e-5	0.0114335	0.00245309
chr21	46641747	46641846	7634704	0	+	0.585859	(0.58,1]	chr21	798554	44	INTRON	INTRON	PRMT2	ENSG00000160310.19	ENST00000451211.6:ENST00000458387.6:ENST00000397638.6:ENST00000291705.11:ENST00000397637.5:ENST00000334494.8:ENST00000355680.8:ENST00000397628.5:ENST00000440086.5	protein_coding	protein_coding	protein_coding	protein_coding	0	114	2	5.45872	6.09057	6.72242	0.00211999	0.00121317	0.0239744	0.0210863
chr1	12581862	12581961	402421	0	-	0.343434	(0.33,0.36]	chr1	46222	8	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	109	2	5.81391	6.0896799999999995	6.36545	0.00644852	0.00200357	0.0530227	0.0230381
chr6	52526209	52526309	3147939	0	-	0.33	(0.29,0.33]	chr6	307022	91	INTRON	INTRON	TRAM2	ENSG00000065308.5	ENST00000182527.4	protein_coding	protein_coding	protein_coding	protein_coding	0	105	2	5.99803	6.089585	6.18114	0.00669623	9.81074e-4	0.0541591	0.0140347
chr10	79165529	79165629	4533012	0	+	0.55	(0.523,0.58]	chr10	432438	30	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	281	2	4.9139	6.0892800000000005	7.26466	0.00161235	2.11593e-5	0.0248552	8.73984e-4
chr19	18467803	18467902	7347869	0	-	0.555556	(0.523,0.58]	chr19	761486	15	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	122	2	5.35452	6.08877	6.82302	0.00453096	0.00229691	0.0400651	0.0302623
chr7	66396651	66396749	3594376	0	-	0.459184	(0.45,0.485]	chr7	346742	3	INTRON	INTRON	LINC00174	ENSG00000179406.9	ENST00000421767.1:ENST00000638517.1:ENST00000640964.1	lncRNA	lncRNA	lncRNA	lncRNA	0	105	2	5.98601	6.088755	6.1915	0.0119228	6.44145e-4	0.0741726	0.0104271
chr1	42849842	42849921	105836	0	+	0.481013	(0.45,0.485]	chr1	12814	1	SS5_PROX	SS5_PROX:INTRON	ZNF691	ENSG00000164011.18	ENST00000372502.5:ENST00000372508.7:ENST00000651192.1:ENST00000372507.5:ENST00000372506.5:ENST00000372504.5:ENST00000397034.3:ENST00000372503.2	protein_coding	protein_coding	protein_coding	protein_coding	0	105	2	6.01306	6.08873	6.1644	0.0113949	6.92954e-4	0.0723462	0.0109657
chr3	50174922	50174995	1469152	0	+	0.575342	(0.523,0.58]	chr3	157427	2	SS3_PROX	SS3_PROX:INTRON	SEMA3F	ENSG00000001617.12	ENST00000414301.5:ENST00000450338.5:ENST00000413852.5:ENST00000002829.8:ENST00000434342.5:ENST00000420831.1	protein_coding	protein_coding	protein_coding	protein_coding	0	110	2	5.51247	6.088710000000001	6.66495	0.0230387	1.32802e-4	0.102982	0.00337193
chr17	77320848	77320944	6803563	0	+	0.65625	(0.58,1]	chr17	686729	1	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	102	2	5.93474	6.088595	6.24245	0.00334087	5.58693e-4	0.0368376	0.00944382
chr7	5700169	5700269	3538362	0	-	0.54	(0.523,0.58]	chr7	341641	473	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000484458.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	107	2	5.84373	6.088595	6.33346	0.00571732	0.00133116	0.0498083	0.0173248
chr18	62721355	62721455	7080096	0	+	0.42	(0.419,0.45]	chr18	721968	37	INTRON	INTRON	PHLPP1	ENSG00000081913.14	ENST00000262719.10	protein_coding	protein_coding	protein_coding	protein_coding	1	325	2	5.18501	6.088395	6.99178	0.00153816	1.16955e-4	0.0242311	0.00308693
chr9	33156977	33157077	4293483	0	-	0.48	(0.45,0.485]	chr9	410135	212	INTRON	INTRON	B4GALT1	ENSG00000086062.13	ENST00000535206.5:ENST00000379731.5	protein_coding	protein_coding	protein_coding	protein_coding	0	105	2	5.95844	6.08827	6.2181	0.0124835	5.99406e-4	0.0761905	0.00993857
chr10	37839410	37839510	4673959	0	-	0.42	(0.419,0.45]	chr10	445799	9	INTRON	INTRON	ZNF248	ENSG00000198105.16	ENST00000615949.6:ENST00000485560.5:ENST00000395867.8:ENST00000357328.8:ENST00000611278.4:ENST00000374648.7:ENST00000395873.7:ENST00000395874.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	107	2	5.96475	6.08813	6.21151	0.0169309	9.41863e-4	0.088829	0.0135546
chr19	7119683	7119783	7323446	0	-	0.47	(0.45,0.485]	chr19	756715	1	SS3_PROX	SS3_PROX:INTRON	INSR	ENSG00000171105.14	ENST00000341500.9:ENST00000302850.10	protein_coding	protein_coding	protein_coding	protein_coding	0	107	2	5.89443	6.087865	6.2813	0.00719875	0.00141013	0.056408	0.0180659
chrX	1423534	1423633	7965718	0	-	0.545455	(0.523,0.58]	chrX	834272	13	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	104	2	5.99431	6.0878	6.18129	0.0104033	5.34061e-4	0.0686837	0.0091384
chr12	42218166	42218266	5416897	0	-	0.43	(0.419,0.45]	chr12	530176	53	INTRON	INTRON	YAF2	ENSG00000015153.15	ENST00000534854.7:ENST00000327791.8:ENST00000380790.4:ENST00000552109.5:ENST00000547622.5:ENST00000547351.5:ENST00000551268.5:ENST00000548661.5:ENST00000546726.5:ENST00000547724.1:ENST00000552928.5:ENST00000548917.1:ENST00000547254.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	242	2	4.99367	6.0877	7.18173	0.00221619	2.28122e-4	0.0295806	0.00496787
chr11	76868367	76868467	4903259	0	+	0.44	(0.419,0.45]	chr11	473156	1	SS5_PROX	SS5_PROX:INTRON	ACER3	ENSG00000078124.13	ENST00000679754.1:ENST00000534206.5:ENST00000679866.1:ENST00000680842.1:ENST00000681257.1:ENST00000681354.1:ENST00000681732.1:ENST00000680583.1:ENST00000532485.6:ENST00000681375.1:ENST00000681004.1:ENST00000525194.5:ENST00000525861.5:ENST00000530182.6:ENST00000531461.5:ENST00000681955.1:ENST00000681411.1:ENST00000679611.1:ENST00000679924.1:ENST00000526597.5:ENST00000681251.1:ENST00000530334.6:ENST00000533873.1:ENST00000531352.5:ENST00000278544.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	110	2	5.82848	6.087405	6.34633	0.00923958	0.00242141	0.0644666	0.0261589
chr10	132565848	132565948	4617119	0	+	0.47	(0.45,0.485]	chr10	441139	273	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	105	2	5.93034	6.08728	6.24422	0.0130794	5.58345e-4	0.0782396	0.00944382
chr1	117086216	117086316	219162	0	+	0.42	(0.419,0.45]	chr1	24185	4	SS3_PROX	SS3_PROX:INTRON	TTF2	ENSG00000116830.12	ENST00000369466.9	protein_coding	protein_coding	protein_coding	protein_coding	0	107	2	6.07002	6.08706	6.1041	0.0143746	0.00123471	0.0821732	0.0164614
chr7	47525536	47525636	3589068	0	-	0.42	(0.419,0.45]	chr7	346138	182	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	107	2	6.07002	6.08706	6.1041	0.0143746	0.00123471	0.0821732	0.0164614
chr16	12732425	12732525	6551474	0	-	0.52	(0.485,0.523]	chr16	652230	270	INTRON	INTRON	CPPED1	ENSG00000103381.12	ENST00000381774.9:ENST00000433677.6:ENST00000261660.4	protein_coding	protein_coding	protein_coding	protein_coding	0	107	2	5.84014	6.087015	6.33389	0.00567224	0.00139792	0.0496143	0.0179863
chr5	64856380	64856479	2432646	0	+	0.292929	(0.29,0.33]	chr5	242401	18	INTRON	INTRON	CWC27	ENSG00000153015.17	ENST00000693640.1:ENST00000693303.1:ENST00000381070.8:ENST00000691921.1:ENST00000688318.1:ENST00000689574.1:ENST00000693660.1:ENST00000687314.1:ENST00000692763.1:ENST00000693121.1:ENST00000689534.1:ENST00000692005.1:ENST00000607786.2:ENST00000692572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	104	2	6.00161	6.086955	6.1723	0.00923185	6.13404e-4	0.0644666	0.0100959
chr6	48110548	48110648	3147057	0	-	0.33	(0.29,0.33]	chr6	306802	1	SS5_PROX	SS5_PROX:INTRON	PTCHD4:ENSG00000286811	ENSG00000244694.8:ENSG00000286811.1	ENST00000339488.9:ENST00000398738.3:ENST00000679966.1:ENST00000661865.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	240	2	5.52341	6.086935	6.65046	0.00278312	2.87487e-5	0.0334064	0.00109112
chr2	223911553	223911652	1377002	0	-	0.525253	(0.523,0.58]	chr2	147081	52	INTRON	INTRON	WDFY1	ENSG00000085449.15	ENST00000233055.9:ENST00000429915.1:ENST00000483061.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	109	2	5.73609	6.0868199999999995	6.43755	0.00473049	0.0017613	0.0449253	0.0211077
chr7	4737338	4737438	3309892	0	+	0.48	(0.45,0.485]	chr7	320808	541	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	0	108	2	5.8269	6.0867249999999995	6.34655	0.00642055	0.00167585	0.0529785	0.0203806
chr6	47232479	47232574	3143728	0	-	0.326316	(0.29,0.33]	chr6	306733	11	UTR3	UTR3:EXON_MRNA	TNFRSF21	ENSG00000146072.6	ENST00000296861.2	protein_coding	protein_coding	protein_coding	protein_coding	6	660	2	4.9897	6.08648	7.18326	9.70539e-4	5.83669e-6	0.0187276	3.51974e-4
chr11	70585129	70585229	5060124	0	-	0.65	(0.58,1]	chr11	492663	818	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	109	2	5.59324	6.086354999999999	6.57947	0.00165065	0.0014734	0.0250898	0.0185589
chr6	169650747	169650845	3304371	0	-	0.540816	(0.523,0.58]	chr6	319869	11	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	229	2	4.83722	6.086265	7.33531	8.42028e-4	2.14954e-4	0.0172456	0.00476765
chr10	132574441	132574541	4617205	0	+	0.51	(0.485,0.523]	chr10	441139	359	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	104	2	5.99474	6.08622	6.1777	0.0103305	5.64449e-4	0.0684871	0.00950156
chr13	75393290	75393390	5727117	0	-	0.28	[0,0.29]	chr13	561722	161	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	0	102	2	6.05928	6.08612	6.11296	0.00532344	5.30102e-4	0.0478836	0.00909661
chr13	113615234	113615333	5659153	0	+	0.494949	(0.485,0.523]	chr13	555781	38	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	112	2	5.43453	6.086045	6.73756	0.0258944	1.13097e-4	0.109555	0.0030016
chr3	196766836	196766936	1666797	0	+	0.3	(0.29,0.33]	chr3	174782	263	INTRON	INTRON	PAK2	ENSG00000180370.10	ENST00000327134.7	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	5.72714	6.08601	6.44488	0.00411483	0.00198096	0.0414433	0.0229039
chr19	5288332	5288432	7316491	0	-	0.51	(0.485,0.523]	chr19	755347	17	INTRON	INTRON	PTPRS	ENSG00000105426.18	ENST00000588552.5:ENST00000262963.11:ENST00000591760.5:ENST00000586065.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	104	2	5.96717	6.085985	6.2048	0.0108319	5.23665e-4	0.0707085	0.0090184
chr10	114583361	114583460	4763632	0	-	0.464646	(0.45,0.485]	chr10	455655	74	INTRON	INTRON	ABLIM1	ENSG00000099204.21	ENST00000533213.7:ENST00000392955.7:ENST00000369256.6:ENST00000649363.1:ENST00000651092.1:ENST00000651023.1	protein_coding	protein_coding	protein_coding	protein_coding	0	106	2	5.95894	6.085945000000001	6.21295	0.00810629	0.00119342	0.0602166	0.016037
chr12	10928811	10928911	5370168	0	-	0.47	(0.45,0.485]	chr12	526795	331	INTRON	INTRON	ENSG00000275778:PRH1	ENSG00000275778.2:ENSG00000231887.8	ENST00000536668.2:ENST00000535024.6:ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000546317.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	106	2	5.95894	6.085945000000001	6.21295	0.00810629	0.00119342	0.0602166	0.016037
chr5	38483997	38484089	2640526	0	-	0.467391	(0.45,0.485]	chr5	262243	10	INTRON	INTRON	LIFR	ENSG00000113594.10	ENST00000453190.7:ENST00000263409.8	protein_coding	protein_coding	protein_coding	protein_coding	0	105	2	6.0799	6.0856	6.0913	0.00998516	8.68466e-4	0.0673647	0.0128564
chr3	180573555	180573655	1963694	0	-	0.43	(0.419,0.45]	chr3	199548	63	INTRON	INTRON	TTC14-DT	ENSG00000239774.1	ENST00000472596.1	lncRNA	lncRNA	lncRNA	lncRNA	0	112	2	5.72351	6.085495	6.44748	0.00782663	0.00310292	0.0592048	0.0311614
chr19	9847629	9847729	7202730	0	+	0.54	(0.523,0.58]	chr19	734583	2	SS3_PROX	SS3_PROX:INTRON	PIN1	ENSG00000127445.14	ENST00000247970.9:ENST00000587625.5:ENST00000586025.5:ENST00000590540.5:ENST00000588695.5:ENST00000586352.5:ENST00000585442.5:ENST00000589058.5:ENST00000380889.6:ENST00000591777.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	104	2	6.074	6.08539	6.09678	0.00906277	6.74499e-4	0.0637469	0.0108081
chr7	74831509	74831608	3603807	0	-	0.393939	(0.39,0.419]	chr7	347861	61	INTRON	INTRON	GTF2IRD2	ENSG00000196275.16	ENST00000451013.7:ENST00000651129.1:ENST00000619775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	108	2	5.90288	6.085355	6.26783	0.00920367	0.00183094	0.0644228	0.0216571
chr2	70022335	70022435	1178195	0	-	0.49	(0.485,0.523]	chr2	128185	32	INTRON	INTRON	PCBP1-AS1	ENSG00000179818.16	ENST00000419542.5:ENST00000682294.1:ENST00000684630.1:ENST00000630975.3:ENST00000435880.6:ENST00000629339.3:ENST00000667874.1:ENST00000628659.2:ENST00000628308.2:ENST00000626515.2:ENST00000625447.2:ENST00000628305.2:ENST00000625625.2:ENST00000625864.2:ENST00000630522.2:ENST00000628837.2:ENST00000627325.2:ENST00000629084.2:ENST00000629603.2:ENST00000625215.2:ENST00000627189.2:ENST00000629836.2:ENST00000626898.2:ENST00000628883.2:ENST00000629533.2:ENST00000627181.2:ENST00000630214.2:ENST00000627918.2:ENST00000628374.2:ENST00000627327.2:ENST00000626495.2:ENST00000629605.2:ENST00000626370.2:ENST00000626842.2:ENST00000630457.2:ENST00000629184.2:ENST00000628551.2:ENST00000630746.2:ENST00000627398.2:ENST00000457076.5:ENST00000625783.2:ENST00000625490.2:ENST00000627050.2:ENST00000630759.2:ENST00000628667.2:ENST00000626632.2:ENST00000631110.2:ENST00000626609.2:ENST00000629506.2:ENST00000630985.2:ENST00000413436.5:ENST00000628147.2:ENST00000631107.2:ENST00000629415.2:ENST00000418564.5:ENST00000630280.2:ENST00000415222.5:ENST00000628322.2:ENST00000626440.2:ENST00000628455.2:ENST00000665708.1:ENST00000655086.1:ENST00000420309.6:ENST00000627487.3:ENST00000670036.1:ENST00000655096.1:ENST00000685127.1:ENST00000684907.1:ENST00000685079.1:ENST00000687866.1:ENST00000692564.1:ENST00000686517.1:ENST00000689138.1:ENST00000688056.1:ENST00000594376.6:ENST00000692333.1:ENST00000688045.1:ENST00000657291.1:ENST00000691987.1:ENST00000664483.1:ENST00000601431.6:ENST00000685803.1:ENST00000690200.1:ENST00000686800.1:ENST00000684857.1:ENST00000627037.2:ENST00000629212.2:ENST00000688473.1:ENST00000456161.5:ENST00000629304.1:ENST00000627074.2:ENST00000419963.5:ENST00000625227.2:ENST00000599673.5:ENST00000629407.2:ENST00000612430.3:ENST00000418308.5:ENST00000630283.2:ENST00000629178.2:ENST00000627542.2:ENST00000626574.2:ENST00000596028.5:ENST00000629485.2:ENST00000630685.2:ENST00000452431.5:ENST00000629374.2:ENST00000423402.5:ENST00000411429.5:ENST00000629188.2:ENST00000434781.5:ENST00000626162.2:ENST00000654878.1:ENST00000659586.1:ENST00000457770.6:ENST00000415742.5:ENST00000627540.2:ENST00000628263.2	lncRNA	lncRNA	lncRNA	lncRNA	0	105	2	5.97221	6.08519	6.19817	0.00723584	9.86421e-4	0.0565323	0.0140716
chr2	159574143	159574243	1290511	0	-	0.36	(0.33,0.36]	chr2	138666	179	INTRON	INTRON	BAZ2B	ENSG00000123636.19	ENST00000392782.5:ENST00000392783.7:ENST00000541068.6:ENST00000437839.5:ENST00000483316.1:ENST00000552327.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	110	2	5.74308	6.0850349999999995	6.42699	0.00578704	0.00238447	0.0501412	0.0260514
chr3	13024095	13024195	1689377	0	-	0.46	(0.45,0.485]	chr3	176542	16	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	1	231	2	5.11519	6.0850349999999995	7.05488	0.00175046	1.11073e-4	0.0259608	0.0029728
chr5	60233205	60233305	2676483	0	-	0.36	(0.33,0.36]	chr5	264416	444	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000502484.6:ENST00000509368.6:ENST00000509355.5:ENST00000506024.5:ENST00000506510.6:ENST00000511382.1:ENST00000505507.6:ENST00000514552.5:ENST00000515835.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	114	2	5.59003	6.08468	6.57933	0.00441125	0.00344516	0.0430586	0.0333853
chr20	20512212	20512312	7534325	0	-	0.4	(0.39,0.419]	chr20	786297	3	SS5_PROX	SS5_PROX:INTRON	RALGAPA2	ENSG00000188559.16	ENST00000202677.12:ENST00000430436.5:ENST00000427175.2	protein_coding	protein_coding	protein_coding	protein_coding	0	118	2	5.49586	6.084225	6.67259	0.00479873	0.00461678	0.0442497	0.0416285
chr10	132565548	132565648	4617116	0	+	0.37	(0.36,0.39]	chr10	441139	270	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	106	2	6.02754	6.08414	6.14074	0.0133452	0.0010006	0.0789398	0.0142243
chr13	97339724	97339823	5631981	0	+	0.59596	(0.58,1]	chr13	553188	49	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	262	2	4.21737	6.08406	7.95075	0.00398024	6.67696e-7	0.040832	8.03272e-5
chr16	2517639	2517737	6374178	0	+	0.510204	(0.485,0.523]	chr16	629810	29	INTRON	INTRON	ATP6V0C	ENSG00000185883.12	ENST00000330398.9:ENST00000568562.1:ENST00000565223.1	protein_coding	protein_coding	protein_coding	protein_coding	0	116	2	5.48966	6.083819999999999	6.67798	0.0033837199999999998	0.00300122	0.0348875	0.0328791
chr21	45479309	45479401	7631067	0	+	0.5	(0.485,0.523]	chr21	797700	6	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	104	2	6.07443	6.08381	6.09319	0.00899749	7.11715e-4	0.0637469	0.0112082
chr3	88109125	88109225	1512522	0	+	0.43	(0.419,0.45]	chr3	161123	224	INTRON	INTRON	ZNF654	ENSG00000175105.8	ENST00000636215.2:ENST00000473136.4:ENST00000623596.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	111	2	5.75936	6.083615	6.40787	0.00835435	0.00285253	0.0613588	0.0294017
chr2	175663455	175663555	959981	0	+	0.37	(0.36,0.39]	chr2	105443	685	INTRON	INTRON	ENSG00000289349	ENSG00000289349.1	ENST00000692740.1:ENST00000685522.1	lncRNA	lncRNA	lncRNA	lncRNA	0	106	2	5.9463800000000004	6.083465	6.22055	0.0151971	8.14665e-4	0.084474	0.0123172
chr11	118380050	118380150	4946391	0	+	0.43	(0.419,0.45]	chr11	477384	3	SS5_PROX	SS5_PROX:INTRON	UBE4A	ENSG00000110344.10	ENST00000252108.8:ENST00000431736.6:ENST00000545354.1	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	5.86184	6.08282	6.3038	0.00990101	0.00223565	0.0671959	0.024843
chr2	111147323	111147423	1250078	0	-	0.52	(0.485,0.523]	chr2	134763	147	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1	lncRNA	lncRNA	lncRNA	lncRNA	0	113	2	5.57523	6.08278	6.59033	0.00353829	0.00274261	0.0381878	0.028553
chr18	76402981	76403081	7179149	0	-	0.62	(0.58,1]	chr18	730080	223	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	100	2	5.95454	6.08261	6.21068	0.0059453	2.44053e-4	0.0506158	0.00522003
chr15	37099197	37099296	6228422	0	-	0.717172	(0.58,1]	chr15	612881	4	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	MEIS2	ENSG00000134138.20	ENST00000338564.9:ENST00000561208.6:ENST00000340545.9:ENST00000314177.12:ENST00000560570.5:ENST00000557796.6:ENST00000397620.6:ENST00000424352.6:ENST00000559561.5:ENST00000558313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	100	2	6.01134	6.0825499999999995	6.15376	0.00531709	2.90409e-4	0.047841	0.0059241
chr7	27114342	27114441	3559805	0	-	0.454545	(0.45,0.485]	chr7	343721	6	INTRON	INTRON	HOXA3	ENSG00000105997.23	ENST00000396352.8:ENST00000612286.5:ENST00000317201.7:ENST00000522788.5:ENST00000521401.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	232	2	4.87037	6.082295	7.29422	0.00110556	2.29543e-4	0.0200331	0.00498593
chr17	72898665	72898765	6967275	0	-	0.37	(0.36,0.39]	chr17	710518	485	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	106	2	5.91828	6.0822400000000005	6.2462	0.0158902	7.62178e-4	0.0859576	0.0117554
chr2	11482980	11483080	719690	0	+	0.87	(0.58,1]	chr2	84084	2	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000628795.2	protein_coding	protein_coding	protein_coding	protein_coding	5	958	2	5.30709	6.081975	6.85686	8.24268e-6	1.22413e-6	0.00174128	1.1932e-4
chr19	1172129	1172228	7305774	0	-	0.585859	(0.58,1]	chr19	753058	31	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	100	2	6.03893	6.081685	6.12444	0.00503456	3.17437e-4	0.0464858	0.00632787
chr10	18557267	18557367	4642301	0	-	0.47	(0.45,0.485]	chr10	443321	49	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	5.47648	6.081289999999999	6.6861	0.0039628	0.00348661	0.0379065	0.0368027
chr2	45509631	45509731	1138477	0	-	0.41	(0.39,0.419]	chr2	124602	209	INTRON	INTRON	SRBD1	ENSG00000068784.13	ENST00000263736.5:ENST00000475073.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	106	2	5.91692	6.081275	6.24563	0.0162442	7.69256e-4	0.0873195	0.0118331
chr20	32475736	32475835	7543625	0	-	0.555556	(0.523,0.58]	chr20	787372	6	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	114	2	5.53665	6.081125	6.6256	0.00333843	0.00291382	0.0368376	0.0298557
chr5	113005070	113005168	2508042	0	+	0.489796	(0.485,0.523]	chr5	249360	6	INTRON	INTRON	DCP2	ENSG00000172795.17	ENST00000515408.5:ENST00000513585.6:ENST00000502635.2:ENST00000389063.3:ENST00000674880.1:ENST00000512751.5:ENST00000508359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	105	2	5.94031	6.081005	6.2217	0.00693912	0.00107389	0.0553898	0.0148869
chr1	31413812	31413879	80060	0	+	0.522388	(0.485,0.523]	chr1	9149	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	SERINC2	ENSG00000168528.12	ENST00000373710.5:ENST00000536859.5:ENST00000487207.5:ENST00000373709.8:ENST00000536384.2:ENST00000491976.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	190	2	4.43249	6.081004999999999	7.72952	0.0322299	3.74499e-4	0.12988	0.0111071
chr1	1053171	1053267	1296	0	+	0.614583	(0.58,1]	chr1	283	13	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	746	2	5.80464	6.08084	6.35704	3.53895e-5	6.31935e-7	0.00328636	7.77516e-5
chr22	50234026	50234125	7827201	0	-	0.59596	(0.58,1]	chr22	821200	1	INTRON	INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	209	2	5.16129	6.080705	7.00012	6.58123e-4	4.39806e-5	0.0150669	0.00149886
chr12	120248515	120248615	5522142	0	-	0.59	(0.58,1]	chr12	543973	4	SS5_PROX	SS5_PROX:INTRON	PXN	ENSG00000089159.17	ENST00000267257.11:ENST00000228307.11:ENST00000424649.6:ENST00000637617.2:ENST00000458477.6:ENST00000323871.9:ENST00000547983.5:ENST00000551327.5:ENST00000440827.3:ENST00000547746.1:ENST00000550205.1:ENST00000547772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	212	2	4.88127	6.080579999999999	7.27989	3.49762e-4	1.11822e-4	0.0106878	0.00298349
chr6	149358616	149358716	3036125	0	+	0.33	(0.29,0.33]	chr6	296060	115	INTRON	INTRON	TAB2	ENSG00000055208.19	ENST00000606202.1:ENST00000636456.1:ENST00000637181.2:ENST00000367456.5:ENST00000606797.5:ENST00000538427.5:ENST00000470466.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	104	2	6.02857	6.08033	6.13209	0.00731667	9.04417e-4	0.0568523	0.0132704
chr6	12033247	12033347	2854349	0	+	0.36	(0.33,0.36]	chr6	278955	125	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1:ENST00000484210.1	protein_coding	protein_coding	protein_coding	protein_coding	0	105	2	6.06348	6.079535	6.09559	0.0108257	9.809e-4	0.0707085	0.0140347
chr20	31766355	31766455	7453796	0	+	0.38	(0.36,0.39]	chr20	775811	4	SS3_PROX	SS3_PROX:INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	5.80333	6.079445	6.35556	0.0077647	0.00231859	0.0589564	0.0255753
chr19	2440920	2441019	7309595	0	-	0.545455	(0.523,0.58]	chr19	753890	20	INTRON	INTRON	LMNB2	ENSG00000176619.13	ENST00000325327.4	protein_coding	protein_coding	protein_coding	protein_coding	1	227	2	4.86674	6.079135	7.29153	9.18957e-4	1.96709e-4	0.0180726	0.00447406
chrX	48818412	48818512	7879396	0	+	0.58	(0.523,0.58]	chrX	826246	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HDAC6	ENSG00000094631.21	ENST00000376619.6:ENST00000477528.5:ENST00000334136.11:ENST00000643659.1:ENST00000643374.1:ENST00000644068.1:ENST00000643934.1:ENST00000647398.1:ENST00000486227.5:ENST00000645643.1:ENST00000486665.5:ENST00000470942.1:ENST00000480525.5:ENST00000498808.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	110	2	5.47382	6.0791	6.68438	0.0244797	1.2535e-4	0.106683	0.00324328
chr13	112973938	112974037	5655360	0	+	0.626263	(0.58,1]	chr13	555120	41	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	105	2	5.71628	6.0789349999999995	6.44159	0.00221069	0.00104668	0.0295736	0.0146403
chr6	158328167	158328267	3061803	0	+	0.47	(0.45,0.485]	chr6	297592	135	INTRON	INTRON	ENSG00000274023:TULP4	ENSG00000274023.1:ENSG00000130338.13	ENST00000619713.1:ENST00000367097.8:ENST00000367094.6:ENST00000616856.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	2	310	2	4.78784	6.078625000000001	7.36941	9.55229e-4	7.39354e-5	0.0184882	0.00219171
chr14	104890450	104890547	5926130	0	+	0.525773	(0.523,0.58]	chr14	579999	3	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	104	2	6.00701	6.07826	6.14951	0.00793972	8.61362e-4	0.0596361	0.0127848
chr7	87570723	87570822	3630436	0	-	0.353535	(0.33,0.36]	chr7	349785	1	INTRON	INTRON	ABCB1	ENSG00000085563.15	ENST00000622132.5:ENST00000265724.8:ENST00000543898.5	protein_coding	protein_coding	protein_coding	protein_coding	0	105	2	5.89946	6.078145	6.25683	0.0142052	6.42061e-4	0.0816536	0.0104165
chr16	18844039	18844138	6560190	0	-	0.363636	(0.36,0.39]	chr16	654007	12	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000563448.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	106	2	6.02697	6.07804	6.12911	0.0113159	0.00133548	0.0722887	0.0173572
chr18	76926736	76926836	7096455	0	+	0.38	(0.36,0.39]	chr18	722706	3	SS3_PROX	SS3_PROX:INTRON	ZNF236	ENSG00000130856.17	ENST00000320610.14:ENST00000543926.6:ENST00000253159.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	117	2	5.33106	6.077935	6.82481	0.0383628	1.5953e-4	0.131324	0.00385227
chr2	54767545	54767644	800922	0	+	0.434343	(0.419,0.45]	chr2	91005	419	INTRON	INTRON	EML6	ENSG00000214595.13	ENST00000673912.1:ENST00000356458.8:ENST00000491655.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	113	2	5.4831	6.077895	6.67269	0.0345118	2.80959e-4	0.126025	0.00578259
chr3	48426319	48426416	1766697	0	-	0.546392	(0.523,0.58]	chr3	182283	6	INTRON	INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	301	2	4.58241	6.077845	7.57328	5.21034e-4	1.15364e-4	0.0132625	0.00305454
chr3	128899461	128899561	1564896	0	+	0.57	(0.523,0.58]	chr3	165468	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ACAD9	ENSG00000177646.20	ENST00000681583.1:ENST00000681367.1:ENST00000679613.1:ENST00000680636.1:ENST00000511325.2:ENST00000681319.1:ENST00000681585.1:ENST00000681784.1:ENST00000308982.12:ENST00000679399.1:ENST00000681552.1:ENST00000511227.5:ENST00000505192.5:ENST00000679990.1:ENST00000681886.1:ENST00000679431.1:ENST00000680764.1:ENST00000505867.5:ENST00000680744.1:ENST00000679824.1:ENST00000681589.1:ENST00000679715.1:ENST00000511526.5:ENST00000508971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	106	2	5.84373	6.077719999999999	6.31171	0.00594629	0.00133116	0.0506158	0.0173248
chr18	62721455	62721555	7080097	0	+	0.23	[0,0.29]	chr18	721968	38	INTRON	INTRON	PHLPP1	ENSG00000081913.14	ENST00000262719.10	protein_coding	protein_coding	protein_coding	protein_coding	0	102	2	5.99195	6.0773399999999995	6.16273	0.00434262	7.44037e-4	0.0427656	0.0115713
chr7	95175262	95175362	3421467	0	+	0.45	(0.419,0.45]	chr7	330386	129	INTRON	INTRON	PPP1R9A	ENSG00000158528.12	ENST00000433360.6:ENST00000340694.8:ENST00000424654.5:ENST00000433881.5:ENST00000456331.6:ENST00000289495.7	protein_coding	protein_coding	protein_coding	protein_coding	1	243	2	5.21478	6.077055	6.93933	0.00339529	1.22138e-4	0.0372808	0.00319013
chr19	32927084	32927184	7363315	0	-	0.5	(0.485,0.523]	chr19	763208	1	SS3_PROX	SS3_PROX:INTRON	CEP89	ENSG00000121289.18	ENST00000305768.10:ENST00000591698.5:ENST00000586984.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	104	2	5.82081	6.07699	6.33317	0.0138807	3.65589e-4	0.0804838	0.00700609
chr16	66604118	66604205	6469316	0	+	0.62069	(0.58,1]	chr16	641973	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CMTM3	ENSG00000140931.20	ENST00000563672.5:ENST00000424011.6:ENST00000562357.5:ENST00000562707.5	protein_coding	protein_coding	protein_coding	protein_coding	0	108	2	5.59324	6.0769	6.56056	0.00171861	0.0014734	0.025659	0.0185589
chr16	85433917	85434017	6517410	0	+	0.55	(0.523,0.58]	chr16	646391	746	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	115	2	5.49322	6.07683	6.66044	0.00324246	0.00312705	0.0356998	0.0319521
chr7	47363084	47363184	3587422	0	-	0.4	(0.39,0.419]	chr7	346030	164	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	289	2	4.68171	6.076695	7.47168	0.003427	2.50197e-5	0.0375273	9.88464e-4
chr1	155667929	155668027	597845	0	-	0.387755	(0.36,0.39]	chr1	70120	62	INTRON	INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000442834.6:ENST00000355499.9:ENST00000405763.7:ENST00000488784.5:ENST00000493625.5:ENST00000477470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	112	2	5.65802	6.076644999999999	6.49527	0.00611969	0.003279	0.0517362	0.0322062
chr10	103700011	103700111	4757100	0	-	0.5	(0.485,0.523]	chr10	454791	65	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	106	2	5.84014	6.0761400000000005	6.31214	0.00589975	0.00139792	0.0506158	0.0179863
chr11	47806569	47806650	5037736	0	-	0.308642	(0.29,0.33]	chr11	487899	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5	protein_coding	protein_coding	protein_coding	protein_coding	1	228	2	5.23235	6.076075	6.9198	0.00164494	7.11095e-5	0.0250898	0.00213222
chr6	34976719	34976818	2901389	0	+	0.383838	(0.36,0.39]	chr6	284510	37	INTRON	INTRON	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1:ENST00000650178.1	protein_coding	protein_coding	protein_coding	protein_coding	0	113	2	5.61929	6.076055	6.53282	0.00573632	0.00359045	0.0499133	0.0342681
chr19	324134	324234	7303117	0	-	0.48	(0.45,0.485]	chr19	752407	101	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	107	2	5.8269	6.076015	6.32513	0.00666704	0.00167585	0.0540577	0.0203806
chr3	186948454	186948554	1650455	0	+	0.56	(0.523,0.58]	chr3	173622	2	SS3_PROX	SS3_PROX:INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000463542.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000468614.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	179	2	4.5249	6.076005	7.62711	0.0266135	4.66936e-4	0.118113	0.0124742
chr19	2337342	2337433	7189497	0	+	0.615385	(0.58,1]	chr19	731789	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1:ENST00000593243.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	100	2	5.83375	6.075975	6.3182	0.00751249	1.74994e-4	0.0576451	0.00410754
chr12	124876387	124876486	5537483	0	-	0.474747	(0.45,0.485]	chr12	546114	89	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000535005.5:ENST00000541661.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	166	2	4.67139	6.075785	7.48018	0.0223378	7.69095e-4	0.108193	0.0164342
chr21	44064285	44064384	7626200	0	+	0.363636	(0.36,0.39]	chr21	797024	1	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	107	2	5.73711	6.07556	6.41401	0.0210765	4.90006e-4	0.0996078	0.00861813
chr9	36339257	36339356	4299358	0	-	0.454545	(0.45,0.485]	chr9	411389	30	UTR3	UTR3:EXON_MRNA	RNF38	ENSG00000137075.18	ENST00000353739.8:ENST00000259605.11:ENST00000377885.6:ENST00000357058.7:ENST00000350199.8:ENST00000611646.4	protein_coding	protein_coding	protein_coding	protein_coding	2	309	2	4.77113	6.0754850000000005	7.37984	9.36002e-4	7.78248e-5	0.0183069	0.00227427
chr3	172135145	172135245	1628424	0	+	0.33	(0.29,0.33]	chr3	170555	12	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	270	2	4.52171	6.075329999999999	7.62895	0.0031868	7.96044e-6	0.0360758	4.36503e-4
chr6	144766736	144766835	3024745	0	+	0.383838	(0.36,0.39]	chr6	295488	84	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000367526.8	protein_coding	protein_coding	protein_coding	protein_coding	0	106	2	5.99707	6.075245	6.15342	0.0108737	0.00143949	0.0707085	0.0183435
chr5	37123963	37124060	2638221	0	-	0.474227	(0.45,0.485]	chr5	261769	11	INTRON	INTRON	CPLANE1	ENSG00000197603.16	ENST00000508244.5:ENST00000651892.2:ENST00000676160.1:ENST00000509849.5:ENST00000514429.5:ENST00000512288.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	104	2	5.98601	6.075205	6.1644	0.0119228	6.92954e-4	0.0741726	0.0109657
chr3	188825530	188825630	1658537	0	+	0.47	(0.45,0.485]	chr3	173846	649	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000459897.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	109	2	5.54186	6.075089999999999	6.60832	0.0243502	2.02062e-4	0.106588	0.00457229
chr12	122276338	122276438	5529743	0	-	0.42	(0.419,0.45]	chr12	545012	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CLIP1	ENSG00000130779.22	ENST00000361654.8:ENST00000358808.6:ENST00000302528.11:ENST00000545889.6:ENST00000620786.5:ENST00000537178.5:ENST00000536634.6:ENST00000648993.1:ENST00000540539.5:ENST00000538120.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	106	2	5.96475	6.075075	6.1854	0.0169309	0.00100635	0.088829	0.0142602
chr11	31668632	31668732	4833653	0	+	0.43	(0.419,0.45]	chr11	462159	43	INTRON	INTRON	ELP4	ENSG00000109911.19	ENST00000639878.1:ENST00000379163.10:ENST00000350638.10:ENST00000638347.1:ENST00000640961.2:ENST00000640081.1:ENST00000640342.1:ENST00000640231.1:ENST00000638917.1:ENST00000395934.2:ENST00000640954.1:ENST00000638184.1:ENST00000638984.1:ENST00000640790.1:ENST00000639097.1:ENST00000638828.1:ENST00000639182.1:ENST00000638317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	106	2	6.01834	6.075025	6.13171	0.015582500000000001	0.00115219	0.0849828	0.0157112
chr20	36855685	36855784	7557058	0	-	0.555556	(0.523,0.58]	chr20	789155	159	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	0	107	2	5.77287	6.074435	6.376	0.00529293	0.00160162	0.047841	0.0197827
chr8	70376333	70376433	3994978	0	-	0.45	(0.419,0.45]	chr8	382245	792	INTRON	INTRON	NCOA2	ENSG00000140396.13	ENST00000452400.7:ENST00000518287.6:ENST00000520416.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	106	2	5.93719	6.07435	6.21151	0.0176643	9.41863e-4	0.0909046	0.0135546
chr14	54678820	54678919	5820563	0	+	0.515152	(0.485,0.523]	chr14	569059	96	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1:ENST00000555091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	227	2	4.85547	6.073715	7.29196	9.09246e-4	2.10628e-4	0.0180048	0.00469277
chr1	246234223	246234323	703127	0	-	0.45	(0.419,0.45]	chr1	82422	406	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	300	2	4.21498	6.073575	7.93217	0.00862096	7.66539e-6	0.0623824	4.25718e-4
chr8	727354	727454	3933004	0	-	0.55	(0.523,0.58]	chr8	376060	110	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	103	2	6.02137	6.073435	6.1255	0.00992924	6.23263e-4	0.0671959	0.0101764
chr7	893158	893239	3307716	0	+	0.679012	(0.58,1]	chr7	320474	4	INTRON	INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000407192.5:ENST00000464468.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	100	2	6.00079	6.07253	6.14427	0.00407804	4.59827e-4	0.0413652	0.00821903
chr15	24985311	24985410	6063698	0	+	0.40404	(0.39,0.419]	chr15	595387	30	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	1	240	2	4.74718	6.072150000000001	7.39712	0.00124687	4.14389e-4	0.0214752	0.00767522
chr7	78984616	78984716	3621838	0	-	0.49	(0.485,0.523]	chr7	349212	373	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000440555.2:ENST00000636989.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	103	2	6.0218	6.071854999999999	6.12191	0.00985907	6.58016e-4	0.0670775	0.0106077
chr21	29306121	29306221	7603711	0	+	0.41	(0.39,0.419]	chr21	794428	4	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000548219.5:ENST00000550131.5:ENST00000547141.5:ENST00000546469.5:ENST00000286800.8:ENST00000399921.5:ENST00000548467.1:ENST00000451655.5:ENST00000447177.5:ENST00000435072.1	protein_coding	protein_coding	protein_coding	protein_coding	1	252	2	4.47761	6.071555	7.6655	8.63775e-4	7.53311e-4	0.0162173	0.0128129
chr17	55324795	55324893	6757718	0	+	0.377551	(0.36,0.39]	chr17	681735	41	UTR3	UTR3:EXON_MRNA	HLF	ENSG00000108924.14	ENST00000226067.10	protein_coding	protein_coding	protein_coding	protein_coding	11	3114	2	5.56208	6.07142	6.58076	1.69127e-5	1.40707e-6	0.00237123	1.31121e-4
chr9	34399508	34399605	4296602	0	-	0.536082	(0.523,0.58]	chr9	410635	13	UTR3	UTR3:EXON_MRNA:INTRON	FAM219A	ENSG00000164970.15	ENST00000651358.1:ENST00000379080.5:ENST00000379081.5:ENST00000379084.5:ENST00000379087.5:ENST00000379089.5:ENST00000445726.5:ENST00000297620.8	protein_coding	protein_coding	protein_coding	protein_coding	0	104	2	5.75742	6.071255	6.38509	0.0155135	3.00426e-4	0.0849828	0.00607383
chr14	104891125	104891221	5926137	0	+	0.520833	(0.485,0.523]	chr14	579999	10	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	105	2	5.87431	6.07097	6.26763	0.00639185	0.00127835	0.0529032	0.0168904
chr19	14522666	14522766	7340320	0	-	0.49	(0.485,0.523]	chr19	760015	40	INTRON	INTRON	DNAJB1	ENSG00000132002.9	ENST00000594099.6:ENST00000596075.2:ENST00000678009.1:ENST00000677848.1:ENST00000596853.6:ENST00000676515.1:ENST00000598692.2:ENST00000677762.1:ENST00000678338.1:ENST00000601533.6:ENST00000679223.1:ENST00000676982.1:ENST00000678098.1:ENST00000396969.8:ENST00000595992.6	protein_coding	protein_coding	protein_coding	protein_coding	0	105	2	5.87431	6.07097	6.26763	0.00639185	0.00127835	0.0529032	0.0168904
chr2	30607748	30607845	745409	0	+	0.474227	(0.45,0.485]	chr2	86899	17	UTR3	UTR3:EXON_MRNA:INTRON	LCLAT1	ENSG00000172954.14	ENST00000319406.8:ENST00000379509.8:ENST00000491680.6:ENST00000309052.8:ENST00000478015.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	104	2	6.0506	6.07095	6.0913	0.00998516	9.38528e-4	0.0673647	0.0135546
chr22	33464855	33464955	7798300	0	-	0.45	(0.419,0.45]	chr22	817588	264	INTRON	INTRON	LARGE1	ENSG00000133424.22	ENST00000608642.6:ENST00000609799.6:ENST00000610186.6:ENST00000397394.8:ENST00000413114.6:ENST00000676070.1:ENST00000674543.1:ENST00000676370.1:ENST00000354992.7:ENST00000402320.6:ENST00000675416.1:ENST00000676132.1:ENST00000676126.1:ENST00000675382.1:ENST00000676031.1:ENST00000674668.1:ENST00000674999.1:ENST00000674708.1:ENST00000674780.1:ENST00000674789.1:ENST00000675277.1:ENST00000421768.2:ENST00000434071.6:ENST00000432776.6:ENST00000423375.2:ENST00000430220.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	107	2	5.75975	6.070945	6.38214	0.0231013	6.07209e-4	0.102982	0.0100293
chr20	61971186	61971286	7582826	0	-	0.54	(0.523,0.58]	chr20	792262	170	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000474089.5	protein_coding	protein_coding	protein_coding	protein_coding	0	103	2	5.88072	6.070925	6.26113	0.0126258	4.27166e-4	0.0761905	0.00779962
chr19	3529500	3529599	7191593	0	+	0.575758	(0.523,0.58]	chr19	732249	13	INTRON	INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	104	2	5.94389	6.070815	6.19774	0.0072907	0.0010207	0.0567247	0.0143498
chrX	69658117	69658217	7896724	0	+	0.36	(0.33,0.36]	chrX	827349	368	INTRON	INTRON	EDA	ENSG00000158813.18	ENST00000374553.6:ENST00000374548.5:ENST00000502251.5:ENST00000533317.5:ENST00000525810.5:ENST00000527388.5:ENST00000374552.9:ENST00000524573.5:ENST00000503592.5:ENST00000510681.2:ENST00000530321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	120	2	5.20687	6.070525	6.93418	0.041040600000000003	9.76753e-5	0.136289	0.00268525
chr1	70342691	70342791	507823	0	-	0.42	(0.419,0.45]	chr1	60393	62	INTRON	INTRON	ANKRD13C	ENSG00000118454.13	ENST00000370944.9:ENST00000262346.6	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	5.79433	6.07033	6.34633	0.00923958	0.00262626	0.0644666	0.0278348
chr2	134450439	134450539	898752	0	+	0.44	(0.419,0.45]	chr2	101298	17	UTR3	UTR3:EXON_MRNA	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	2	322	2	4.65275	6.07012	7.48749	0.00127876	1.63387e-4	0.0218012	0.00391702
chr7	158738334	158738428	3742111	0	-	0.457447	(0.45,0.485]	chr7	359806	8	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000435514.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	330	2	5.45258	6.06959	6.6866	6.27571e-4	1.61391e-4	0.0147128	0.00387712
chr11	16948481	16948581	5011053	0	-	0.4	(0.39,0.419]	chr11	484333	351	INTRON	INTRON	PLEKHA7	ENSG00000166689.17	ENST00000531066.6:ENST00000355661.7:ENST00000532079.1:ENST00000529213.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	107	2	5.70321	6.06955	6.43589	0.0226065	4.66094e-4	0.102982	0.00828434
chr1	244656720	244656820	370679	0	+	0.29	[0,0.29]	chr1	41907	3	INTRON	INTRON	DESI2	ENSG00000121644.19	ENST00000263831.11:ENST00000302550.16:ENST00000418162.1	protein_coding	protein_coding	protein_coding	protein_coding	0	104	2	5.78898	6.06935	6.34972	0.00298169	0.00129345	0.0347875	0.017071
chr6	7409196	7409295	2839746	0	+	0.50505	(0.485,0.523]	chr6	278061	35	INTRON	INTRON	RIOK1	ENSG00000124784.9	ENST00000379834.7:ENST00000264874.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	103	2	5.88115	6.06934	6.25753	0.012541	4.52177e-4	0.0761905	0.00816702
chr3	52238491	52238591	1777963	0	-	0.48	(0.45,0.485]	chr3	184838	1	SS5_PROX	SS5_PROX:INTRON	TWF2	ENSG00000247596.10	ENST00000305533.10:ENST00000678838.1:ENST00000679296.1:ENST00000676989.1:ENST00000678549.1:ENST00000678700.1:ENST00000676800.1:ENST00000677127.1:ENST00000678681.1:ENST00000499914.2:ENST00000472755.2:ENST00000678330.1:ENST00000676988.1:ENST00000677058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	107	2	5.79191	6.069229999999999	6.34655	0.00642055	0.00183113	0.0529785	0.0216571
chr19	33203581	33203677	7240908	0	+	0.635417	(0.58,1]	chr19	741410	2	INTRON	INTRON	LRP3	ENSG00000130881.14	ENST00000592484.5:ENST00000253193.9:ENST00000590275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	100	2	5.76934	6.06922	6.3691	0.00849371	1.49225e-4	0.0617717	0.00367368
chr7	47350738	47350838	3587298	0	-	0.49	(0.485,0.523]	chr7	346030	40	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	103	2	6.06388	6.069155	6.07443	0.00899749	7.70737e-4	0.0637469	0.0118331
chr6	144690128	144690227	3023971	0	+	0.606061	(0.58,1]	chr6	295451	112	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000367526.8	protein_coding	protein_coding	protein_coding	protein_coding	0	100	2	5.96814	6.068795	6.16945	0.00387582	5.06433e-4	0.0401256	0.00881473
chr19	436983	437083	7303557	0	-	0.64	(0.58,1]	chr19	752508	3	SS3_PROX	SS3_PROX:INTRON	SHC2	ENSG00000129946.11	ENST00000264554.11:ENST00000590222.5:ENST00000590113.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	104	2	5.71628	6.06853	6.42078	0.00230938	0.00104668	0.0302623	0.0146403
chr5	307447	307540	2377999	0	+	0.602151	(0.58,1]	chr5	237477	3	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1:ENST00000511482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	99	2	5.98322	6.068490000000001	6.15376	0.00562007	2.90409e-4	0.0493906	0.0059241
chr5	177546073	177546172	2818725	0	-	0.414141	(0.39,0.419]	chr5	276291	66	INTRON	INTRON	FAM193B	ENSG00000146067.16	ENST00000514747.6:ENST00000506955.5:ENST00000508298.5:ENST00000510429.1:ENST00000506432.1:ENST00000507587.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	105	2	5.91692	6.06845	6.21998	0.0162442	8.22163e-4	0.0873195	0.0124043
chr21	46381193	46381293	7632771	0	+	0.36	(0.33,0.36]	chr21	798161	1	SS3_PROX	SS3_PROX:INTRON	PCNT	ENSG00000160299.18	ENST00000466474.6:ENST00000695525.1:ENST00000695558.1:ENST00000359568.10:ENST00000480896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	107	2	5.81391	6.06841	6.32291	0.00694591	0.00200357	0.0553908	0.0230381
chr2	172027757	172027857	954881	0	+	0.39	(0.36,0.39]	chr2	104934	55	INTRON	INTRON	METAP1D	ENSG00000172878.14	ENST00000493035.5:ENST00000315796.5:ENST00000493742.1:ENST00000491440.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	105	2	5.88962	6.0679099999999995	6.2462	0.0166261	7.62178e-4	0.0884836	0.0117554
chr21	41844411	41844510	7673773	0	-	0.606061	(0.58,1]	chr21	802011	42	INTRON	INTRON	PRDM15	ENSG00000141956.14	ENST00000422911.6:ENST00000441787.5:ENST00000449395.6:ENST00000398548.6:ENST00000447016.6:ENST00000269844.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	99	2	6.01134	6.06789	6.12444	0.00531709	3.17437e-4	0.047841	0.00632787
chr11	87057723	87057823	4910579	0	+	0.37	(0.36,0.39]	chr11	474105	192	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000529023.5:ENST00000526733.5:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	105	2	6.05626	6.067740000000001	6.07922	0.0122748	0.00124043	0.0755611	0.0165207
chr20	36315302	36315402	7469140	0	+	0.66	(0.58,1]	chr20	777805	84	INTRON	INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10	protein_coding	protein_coding	protein_coding	protein_coding	0	103	2	5.55681	6.067515	6.57822	0.0126042	7.66421e-5	0.0761905	0.00224403
chr5	7883577	7883677	2381596	0	+	0.43	(0.419,0.45]	chr5	238117	3	SS5_PROX	SS5_PROX:INTRON	MTRR	ENSG00000124275.15	ENST00000264668.6:ENST00000513439.5:ENST00000511461.5:ENST00000440940.7:ENST00000510525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	122	2	5.18804	6.06695	6.94586	0.051668	1.32913e-4	0.148503	0.00337193
chr10	18552670	18552770	4642255	0	-	0.42	(0.419,0.45]	chr10	443321	3	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	113	2	5.61031	6.0669450000000005	6.52358	0.00689831	0.004032	0.0553728	0.0371291
chr2	171022371	171022471	1312783	0	-	0.41	(0.39,0.419]	chr2	140569	1	SS5_PROX	SS5_PROX:INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	105	2	5.88826	6.0669450000000005	6.24563	0.0169925	7.69256e-4	0.0889149	0.0118331
chr9	87547668	87547768	4175926	0	+	0.63	(0.58,1]	chr9	397141	223	INTRON	INTRON	DAPK1	ENSG00000196730.13	ENST00000358077.9:ENST00000469640.6:ENST00000472284.5:ENST00000469067.5:ENST00000408954.8:ENST00000622514.4:ENST00000496522.5:ENST00000472344.1:ENST00000491893.5:ENST00000489291.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	99	2	6.03893	6.066715	6.0945	0.00503456	3.47472e-4	0.0464858	0.00673552
chr22	42648506	42648602	7821317	0	-	0.583333	(0.58,1]	chr22	820391	16	INTRON	INTRON	CYB5R3	ENSG00000100243.22	ENST00000693367.1:ENST00000352397.10:ENST00000361740.9:ENST00000692152.1:ENST00000693363.1:ENST00000689795.1:ENST00000686523.1:ENST00000407332.6:ENST00000687183.1:ENST00000691295.1:ENST00000690835.1:ENST00000689195.1:ENST00000688244.1:ENST00000690993.1:ENST00000689239.1:ENST00000692344.1:ENST00000686129.1:ENST00000466276.2:ENST00000693716.1:ENST00000688004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	113	2	5.41094	6.06668	6.72242	0.00240622	0.00121317	0.0261006	0.0210863
chr7	79113815	79113915	3623134	0	-	0.36	(0.33,0.36]	chr7	349228	1050	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000628997.1:ENST00000636424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	104	2	6.0374	6.066495	6.09559	0.0113089	9.809e-4	0.0722887	0.0140347
chr11	86257214	86257314	4909696	0	+	0.45	(0.419,0.45]	chr11	474028	3	SS3_PROX	SS3_PROX:INTRON	EED	ENSG00000074266.22	ENST00000263360.11:ENST00000528180.5:ENST00000672825.1:ENST00000673233.2:ENST00000327320.8:ENST00000351625.10:ENST00000534595.1:ENST00000525244.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	110	2	5.55739	6.066445	6.5755	0.0310506	3.64701e-4	0.119758	0.00699922
chr15	76495947	76496047	6327781	0	-	0.45	(0.419,0.45]	chr15	624219	243	INTRON	INTRON	SCAPER	ENSG00000140386.13	ENST00000563290.6:ENST00000538941.6:ENST00000324767.11:ENST00000303521.10:ENST00000569395.5:ENST00000568428.5:ENST00000564757.5:ENST00000563688.5:ENST00000569784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	108	2	5.82848	6.06614	6.3038	0.00990101	0.00242141	0.0671959	0.0261589
chr7	133687022	133687122	3489512	0	+	0.42	(0.419,0.45]	chr7	336701	565	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	107	2	5.89444	6.065995	6.23755	0.0110181	0.00206691	0.0708586	0.0235758
chr5	151788580	151788676	2567248	0	+	0.416667	(0.39,0.419]	chr5	255263	4	INTRON	INTRON	G3BP1	ENSG00000145907.16	ENST00000523519.5:ENST00000520578.6:ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000677909.1:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000519832.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677252.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1:ENST00000679057.1:ENST00000677146.1:ENST00000677126.1:ENST00000678027.1:ENST00000678209.1:ENST00000678153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	236	2	5.11537	6.06522	7.01507	0.00251269	1.46555e-4	0.031696	0.00362706
chr17	46105985	46106085	6916954	0	-	0.49	(0.485,0.523]	chr17	704543	109	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2:ENST00000638269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	105	2	5.84014	6.0651	6.29006	0.00613935	0.00139792	0.0517628	0.0179863
chr14	91157238	91157338	5898905	0	+	0.48	(0.45,0.485]	chr14	576320	2	SS3_PROX	SS3_PROX:INTRON	DGLUCY	ENSG00000133943.21	ENST00000521334.5:ENST00000522837.5:ENST00000518871.5:ENST00000520328.5:ENST00000521081.5:ENST00000524232.5:ENST00000522170.5:ENST00000256324.15:ENST00000519950.5:ENST00000523879.5:ENST00000521077.6:ENST00000518665.6:ENST00000519994.5:ENST00000523837.5:ENST00000518868.5:ENST00000518649.5:ENST00000519019.5:ENST00000523816.5:ENST00000517518.5:ENST00000428926.6:ENST00000517362.5:ENST00000523894.5:ENST00000522322.5:ENST00000523771.5:ENST00000521064.5:ENST00000525393.6:ENST00000412671.6:ENST00000298858.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	108	2	5.54186	6.064959999999999	6.58806	0.0243502	2.14087e-4	0.106588	0.00475596
chr6	167963248	167963343	3074744	0	+	0.610526	(0.58,1]	chr6	298970	8	UTR3	UTR3:EXON_MRNA:INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7:ENST00000507704.5:ENST00000515794.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	100	2	5.93474	6.06447	6.1942	0.00368616	5.58693e-4	0.0389784	0.00944382
chr7	893439	893539	3307719	0	+	0.63	(0.58,1]	chr7	320475	3	SS3_PROX	SS3_PROX:INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000407192.5:ENST00000464468.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	100	2	5.93474	6.06447	6.1942	0.00368616	5.58693e-4	0.0389784	0.00944382
chr20	23634668	23634753	7537529	0	-	0.517647	(0.485,0.523]	chr20	786640	3	INTRON	INTRON	CST3	ENSG00000101439.9	ENST00000398411.5:ENST00000398409.1:ENST00000376925.8	protein_coding	protein_coding	protein_coding	protein_coding	4	411	2	4.12384	6.064445000000001	8.00505	2.11674e-4	1.5356e-4	0.00822236	0.00374578
chr2	27481460	27481560	1112875	0	-	0.33	(0.29,0.33]	chr2	121777	2	SS3_PROX	SS3_PROX:INTRON	IFT172	ENSG00000138002.16	ENST00000675690.1:ENST00000260570.8:ENST00000507184.5:ENST00000675410.1:ENST00000674932.1:ENST00000676119.1:ENST00000674824.1:ENST00000674701.1:ENST00000675963.1:ENST00000675618.1:ENST00000675729.1:ENST00000511842.5:ENST00000359466.10:ENST00000416524.2:ENST00000675728.1:ENST00000676300.1:ENST00000476264.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	117	2	5.39334	6.064185	6.73503	0.00448059	0.00236326	0.0398484	0.0306624
chr8	70380430	70380530	3995019	0	-	0.34	(0.33,0.36]	chr8	382245	833	INTRON	INTRON	NCOA2	ENSG00000140396.13	ENST00000452400.7:ENST00000518287.6:ENST00000520416.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	106	2	5.68109	6.0641	6.44711	0.0201622	3.84375e-4	0.0973366	0.00726694
chr19	5817793	5817893	7195564	0	+	0.53	(0.523,0.58]	chr19	733105	120	INTRON	INTRON	NRTN	ENSG00000171119.3	ENST00000303212.3	protein_coding	protein_coding	protein_coding	protein_coding	0	106	2	5.77287	6.06388	6.35489	0.00549977	0.00160162	0.0489559	0.0197827
chr5	151787868	151787894	2567240	0	+	0.346154	(0.33,0.36]	chr5	255261	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000523519.5:ENST00000520578.6:ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000677909.1:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000519832.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677252.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1:ENST00000679057.1:ENST00000677146.1:ENST00000677126.1:ENST00000678027.1:ENST00000678209.1:ENST00000678153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	106	2	5.84807	6.063575	6.27908	0.00749528	0.00184078	0.0576451	0.0217471
chr1	12581762	12581862	402420	0	-	0.58	(0.523,0.58]	chr1	46222	7	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	255	2	4.27978	6.06349	7.8472	0.00107949	2.97175e-4	0.0149203	0.00982269
chr12	132742367	132742462	5539924	0	-	0.473684	(0.45,0.485]	chr12	546701	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ANKLE2	ENSG00000176915.15	ENST00000357997.10:ENST00000539605.5:ENST00000439231.6:ENST00000538591.5:ENST00000535036.5:ENST00000545623.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	228	2	4.9119	6.063395	7.21489	0.00128871	2.03211e-4	0.0219081	0.00458039
chr10	96011738	96011838	4738991	0	-	0.44	(0.419,0.45]	chr10	452307	151	INTRON	INTRON	ENTPD1-AS1	ENSG00000226688.8	ENST00000669711.1:ENST00000416301.5:ENST00000451364.5:ENST00000671323.1:ENST00000656604.1:ENST00000452728.5:ENST00000684888.1:ENST00000454638.5:ENST00000668038.1:ENST00000686747.1:ENST00000693608.1	lncRNA	lncRNA	lncRNA	lncRNA	0	109	2	5.75936	6.063245	6.36713	0.00893106	0.00285253	0.0637469	0.0294017
chr2	135558954	135559054	900794	0	+	0.27	[0,0.29]	chr2	101526	270	INTRON	INTRON	R3HDM1	ENSG00000048991.17	ENST00000483021.5:ENST00000463230.5:ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000438014.5:ENST00000488035.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	216	2	4.97379	6.063205	7.15262	5.37543e-4	1.21078e-4	0.0135293	0.00316885
chr13	100244895	100244995	5644546	0	+	0.43	(0.419,0.45]	chr13	554036	75	INTRON	INTRON	PCCA	ENSG00000175198.17	ENST00000376286.8:ENST00000376279.7:ENST00000376285.6:ENST00000647303.1:ENST00000637657.1:ENST00000636366.1:ENST00000636475.1:ENST00000636420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	240	2	4.7886	6.06302	7.33744	0.00167748	4.02471e-4	0.0253722	0.0075037
chr4	156920650	156920749	2357645	0	-	0.434343	(0.419,0.45]	chr4	235535	468	INTRON	INTRON	PDGFC	ENSG00000145431.11	ENST00000502773.6:ENST00000274071.6:ENST00000422544.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	106	2	5.95751	6.0628150000000005	6.16812	0.0123115	0.0017735	0.0756356	0.02121
chr2	70290980	70291080	1180176	0	-	0.4	(0.39,0.419]	chr2	128476	3	SS5_PROX	SS5_PROX:INTRON	SNRPG	ENSG00000143977.14	ENST00000272348.7:ENST00000429728.1:ENST00000482975.6:ENST00000438261.5:ENST00000454893.1:ENST00000413456.6:ENST00000449935.6:ENST00000480370.1:ENST00000488400.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	106	2	5.90288	6.062754999999999	6.22263	0.00991891	0.00183094	0.0671959	0.0216571
chr4	124708499	124708599	2320515	0	-	0.4	(0.39,0.419]	chr4	233240	292	INTRON	INTRON	ANKRD50	ENSG00000151458.12	ENST00000504087.6:ENST00000515641.1	protein_coding	protein_coding	protein_coding	protein_coding	0	106	2	5.90288	6.062754999999999	6.22263	0.00991891	0.00183094	0.0671959	0.0216571
chr17	47453241	47453339	6922385	0	-	0.418367	(0.39,0.419]	chr17	704974	20	INTRON	INTRON	MRPL45P2	ENSG00000228782.8	ENST00000425159.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	235	2	5.05822	6.06268	7.06714	0.00228675	1.72638e-4	0.0302327	0.00408359
chr3	60524109	60524209	1798848	0	-	0.53	(0.523,0.58]	chr3	186807	4434	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	103	2	5.9758	6.0626549999999995	6.14951	0.00793972	9.36996e-4	0.0596361	0.0135546
chr13	97338428	97338528	5631968	0	+	0.39	(0.36,0.39]	chr13	553188	36	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	108	2	5.6023	6.062625	6.52295	0.0258522	3.65857e-4	0.109555	0.00700609
chr9	113565830	113565930	4225366	0	+	0.48	(0.45,0.485]	chr9	400694	1	SS5_PROX	SS5_PROX:INTRON	RGS3	ENSG00000138835.23	ENST00000374140.6:ENST00000350696.9:ENST00000695401.1:ENST00000478599.5:ENST00000394646.7:ENST00000343817.9:ENST00000496113.1:ENST00000462143.5:ENST00000342620.9:ENST00000489082.1:ENST00000463806.5:ENST00000496275.5:ENST00000488620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	104	2	5.78096	6.06259	6.34422	0.0166968	4.24458e-4	0.0884836	0.00777807
chr18	12430649	12430749	7020149	0	+	0.43	(0.419,0.45]	chr18	717086	1	SS3_PROX	SS3_PROX:INTRON	PRELID3A	ENSG00000141391.14	ENST00000336990.8:ENST00000590956.5:ENST00000440960.6:ENST00000589565.1:ENST00000592149.5:ENST00000587735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	105	2	5.96475	6.061775000000001	6.1588	0.0169309	0.00107628	0.088829	0.0148869
chr18	80134395	80134484	7101350	0	+	0.426966	(0.419,0.45]	chr18	723187	2	INTRON	INTRON	ADNP2	ENSG00000101544.9	ENST00000262198.9:ENST00000560752.5:ENST00000559951.5:ENST00000560561.1:ENST00000561195.1	protein_coding	protein_coding	protein_coding	protein_coding	0	105	2	5.96475	6.061775000000001	6.1588	0.0169309	0.00107628	0.088829	0.0148869
chr12	132544814	132544913	5353064	0	+	0.454545	(0.45,0.485]	chr12	523670	165	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	103	2	5.95844	6.06142	6.1644	0.0124835	6.92954e-4	0.0761905	0.0109657
chr7	47515540	47515640	3588968	0	-	0.44	(0.419,0.45]	chr7	346138	82	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	105	2	5.93719	6.061294999999999	6.1854	0.0176643	0.00100635	0.0909046	0.0142602
chr2	10645862	10645961	1086683	0	-	0.444444	(0.419,0.45]	chr2	118391	11	INTRON	INTRON	NOL10	ENSG00000115761.17	ENST00000695464.1:ENST00000695470.1:ENST00000695467.1:ENST00000695468.1:ENST00000695469.1:ENST00000695466.1:ENST00000381685.10:ENST00000695471.1:ENST00000345985.7:ENST00000538384.5:ENST00000695472.1:ENST00000695473.1:ENST00000695475.1:ENST00000695476.1:ENST00000695477.1:ENST00000695478.1:ENST00000695479.1:ENST00000431319.2:ENST00000695480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	105	2	6.01834	6.0612200000000005	6.1041	0.015582500000000001	0.00123471	0.0849828	0.0164614
chr5	172004883	172004981	2810288	0	-	0.357143	(0.33,0.36]	chr5	275199	12	INTRON	INTRON	FBXW11	ENSG00000072803.18	ENST00000296933.10:ENST00000517395.6:ENST00000265094.9:ENST00000393802.6:ENST00000523843.5:ENST00000519693.5:ENST00000520376.1:ENST00000522507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	104	2	6.00767	6.06096	6.11425	0.00993822	0.00123038	0.0672261	0.0164259
chr14	30981487	30981586	5951551	0	-	0.30303	(0.29,0.33]	chr14	583120	171	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	232	2	5.41979	6.06079	6.70179	0.00252058	3.97806e-5	0.031696	0.00138788
chr18	36015091	36015191	7145074	0	-	0.42	(0.419,0.45]	chr18	726770	214	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5	protein_coding	protein_coding	protein_coding	protein_coding	3	386	2	4.14676	6.060725	7.97469	5.2054e-4	3.57937e-4	0.0132625	0.00690411
chr3	65418738	65418838	1809637	0	-	0.56	(0.523,0.58]	chr3	187193	169	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5	protein_coding	protein_coding	protein_coding	protein_coding	1	222	2	5.03223	6.06064	7.08905	0.00137158	1.1902e-4	0.0226056	0.00312424
chr17	82723585	82723685	6818121	0	+	0.51	(0.485,0.523]	chr17	689151	3	INTRON	INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5:ENST00000571482.2:ENST00000576363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	236	2	4.5471	6.060405	7.57371	5.20483e-4	5.15097e-4	0.0132022	0.00899129
chr14	95319510	95319610	6048844	0	-	0.68	(0.58,1]	chr14	593434	4	SS5_PROX	SS5_PROX:INTRON	CLMN	ENSG00000165959.12	ENST00000298912.9:ENST00000553733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	101	2	5.63118	6.060085	6.48899	0.0109983	1.02074e-4	0.0708586	0.00277572
chr5	139652664	139652764	2549687	0	+	0.38	(0.36,0.39]	chr5	253168	11	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	1	234	2	5.01277	6.05957	7.10637	0.00206645	1.95289e-4	0.0285954	0.0044508
chr2	3362129	3362229	1081737	0	-	0.62	(0.58,1]	chr2	117664	71	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	100	2	5.90055	6.059535	6.21852	0.00350812	6.1741e-4	0.0379357	0.0101143
chr22	50680801	50680898	7754977	0	+	0.536082	(0.523,0.58]	chr22	812716	10	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	102	2	6.02137	6.059075	6.09678	0.00992924	6.74499e-4	0.0671959	0.0108081
chr16	81625693	81625793	6509554	0	+	0.63	(0.58,1]	chr16	645926	36	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	104	2	5.67642	6.059005	6.44159	0.00221069	0.00117039	0.0295736	0.0157899
chr16	16183030	16183130	6556701	0	-	0.48	(0.45,0.485]	chr16	653131	1	SS3_PROX	SS3_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	304	2	4.66663	6.058719999999999	7.45081	8.14729e-4	1.07083e-4	0.016997	0.00288045
chr13	97339524	97339624	5631979	0	+	0.52	(0.485,0.523]	chr13	553188	47	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	102	2	5.96717	6.05862	6.15007	0.0108319	6.0909e-4	0.0707085	0.0100377
chr11	70685607	70685706	5061135	0	-	0.565657	(0.523,0.58]	chr11	492688	156	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	108	2	5.65959	6.058545	6.4575	0.0045605	0.0021416	0.0438198	0.0240825
chr7	155737129	155737229	3519458	0	+	0.47	(0.45,0.485]	chr7	339833	2	SS3_PROX	SS3_PROX:INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	104	2	5.92705	6.058235	6.18942	0.00844217	0.00129636	0.0617623	0.0170746
chr20	44576103	44576203	7483902	0	+	0.38	(0.36,0.39]	chr20	779748	114	INTRON	INTRON	PKIG	ENSG00000168734.14	ENST00000372891.7:ENST00000372892.7:ENST00000372894.7:ENST00000372889.5:ENST00000372887.5:ENST00000477390.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	107	2	5.80333	6.058175	6.31302	0.00834137	0.00231859	0.0613342	0.0255753
chr1	17664146	17664246	54852	0	+	0.53	(0.523,0.58]	chr1	5598	3	SS3_PROX	SS3_PROX:INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	109	2	5.61976	6.0581700000000005	6.49658	0.00424382	0.00236826	0.0422099	0.0259199
chr2	238351842	238351939	1073447	0	+	0.56701	(0.523,0.58]	chr2	116386	21	INTRON	INTRON	TRAF3IP1	ENSG00000204104.12	ENST00000391993.7:ENST00000373327.5:ENST00000462122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	109	2	5.61976	6.0581700000000005	6.49658	0.00424382	0.00236826	0.0422099	0.0259199
chr4	3363296	3363396	2005069	0	+	0.35	(0.33,0.36]	chr4	204663	199	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	106	2	5.64702	6.058125	6.46923	0.0212683	3.61814e-4	0.0996805	0.0069669
chr2	101735830	101735930	861014	0	+	0.45	(0.419,0.45]	chr2	97528	369	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	1	240	2	5.20449	6.05788	6.91127	0.00356503	1.25773e-4	0.0383188	0.00325222
chr8	503189	503288	3931436	0	-	0.565657	(0.523,0.58]	chr8	375980	82	INTRON	INTRON	TDRP	ENSG00000180190.13	ENST00000523656.5:ENST00000324079.11	protein_coding	protein_coding	protein_coding	protein_coding	0	107	2	5.69834	6.057835	6.41733	0.00490887	0.00194036	0.0457614	0.0225083
chr9	6612046	6612145	4275129	0	-	0.414141	(0.39,0.419]	chr9	408387	13	INTRON	INTRON	GLDC	ENSG00000178445.10	ENST00000321612.8:ENST00000639364.1:ENST00000639954.1:ENST00000640592.1:ENST00000639840.1:ENST00000639020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	107	2	5.63585	6.057815	6.47978	0.025023	4.14458e-4	0.10758	0.00767522
chr22	50680219	50680316	7754971	0	+	0.515464	(0.485,0.523]	chr22	812716	4	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	102	2	5.9104	6.0576	6.2048	0.0119344	5.23665e-4	0.0741726	0.0090184
chr12	16033550	16033649	5177495	0	+	0.40404	(0.39,0.419]	chr12	504011	5	INTRON	INTRON	DERA	ENSG00000023697.13	ENST00000526521.5:ENST00000428559.7:ENST00000532964.5:ENST00000526530.1:ENST00000530274.5:ENST00000532573.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	107	2	5.80276	6.0572099999999995	6.31166	0.00855563	0.00233691	0.0621561	0.0257208
chr16	85232465	85232565	6515393	0	+	0.58	(0.523,0.58]	chr16	646377	47	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	110	2	5.5788	6.05672	6.53464	0.00395533	0.00262418	0.0406092	0.0278348
chr20	13550118	13550218	7527058	0	-	0.41	(0.39,0.419]	chr20	785609	156	INTRON	INTRON	TASP1	ENSG00000089123.16	ENST00000480436.5:ENST00000337743.9:ENST00000465381.5:ENST00000455532.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	104	2	5.97258	6.056375	6.14017	0.0148746	0.00100955	0.0833515	0.0142887
chr6	163489393	163489493	3070458	0	+	0.38	(0.36,0.39]	chr6	298578	101	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000545346.1:ENST00000544823.5:ENST00000537883.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	104	2	5.91828	6.056355	6.19443	0.0158902	8.7159e-4	0.0859576	0.0128912
chr12	422113	422213	5148406	0	+	0.47	(0.45,0.485]	chr12	500517	31	INTRON	INTRON	CCDC77	ENSG00000120647.10	ENST00000540180.5:ENST00000422000.5:ENST00000543504.5:ENST00000540344.5:ENST00000412006.6:ENST00000239830.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	103	2	5.84258	6.056229999999999	6.26988	0.0151085	5.20615e-4	0.0841543	0.00899129
chr2	233164424	233164524	1058270	0	+	0.59	(0.58,1]	chr2	115118	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493078.1:ENST00000472517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	99	2	5.96814	6.056205	6.14427	0.00407804	5.06433e-4	0.0413652	0.00881473
chr13	95157109	95157209	5742217	0	-	0.54	(0.523,0.58]	chr13	562780	83	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	104	2	5.65749	6.056075	6.45466	0.0182707	2.45921e-4	0.0921579	0.00524396
chr13	113049921	113050020	5656134	0	+	0.545455	(0.523,0.58]	chr13	555180	27	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	106	2	5.73609	6.056045	6.376	0.00529293	0.0017613	0.047841	0.0211077
chr1	43965379	43965472	110815	0	+	0.537634	(0.523,0.58]	chr1	13723	7	INTRON	INTRON	IPO13	ENSG00000117408.11	ENST00000372343.8	protein_coding	protein_coding	protein_coding	protein_coding	0	102	2	5.85087	6.055999999999999	6.26113	0.0132767	4.27166e-4	0.0787251	0.00779962
chr20	62852815	62852915	7584989	0	-	0.47	(0.45,0.485]	chr20	792812	63	INTRON	INTRON	TCFL5	ENSG00000101190.13	ENST00000335351.8:ENST00000217162.5	protein_coding	protein_coding	protein_coding	protein_coding	0	103	2	6.02069	6.055995	6.0913	0.00998516	0.00101549	0.0673647	0.0143256
chr6	169650164	169650261	3304365	0	-	0.536082	(0.523,0.58]	chr6	319869	5	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	102	2	6.03756	6.05578	6.074	0.00906277	7.92905e-4	0.0637469	0.0120621
chr10	131919186	131919285	4616208	0	+	0.59596	(0.58,1]	chr10	441069	62	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	102	2	5.75506	6.05576	6.35646	0.00264106	9.38062e-4	0.0325876	0.0135546
chr16	89915240	89915340	6526330	0	+	0.44	(0.419,0.45]	chr16	647719	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000267048:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000555427.1:ENST00000639847.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	0	117	2	5.27868	6.055664999999999	6.83265	0.0457732	1.81728e-4	0.142336	0.00422429
chr14	74476992	74477092	6007281	0	-	0.53	(0.523,0.58]	chr14	589463	4	SS3_PROX	SS3_PROX:INTRON	NPC2	ENSG00000119655.11	ENST00000434013.6	protein_coding	protein_coding	protein_coding	protein_coding	0	104	2	5.84373	6.055465	6.2672	0.00644151	0.00133116	0.0530091	0.0173248
chr2	201268913	201269009	991911	0	+	0.53125	(0.523,0.58]	chr2	109043	18	INTRON	INTRON	CASP8	ENSG00000064012.24	ENST00000392263.6:ENST00000432109.6:ENST00000696067.1:ENST00000264275.9:ENST00000471383.5:ENST00000450491.6:ENST00000440732.6:ENST00000392258.7:ENST00000447616.6:ENST00000413726.6:ENST00000358485.8:ENST00000696087.1:ENST00000696068.1:ENST00000696085.1:ENST00000437283.5:ENST00000490412.5:ENST00000339403.6:ENST00000323492.11:ENST00000673742.1:ENST00000429881.2:ENST00000696069.1:ENST00000444430.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	104	2	5.84373	6.055465	6.2672	0.00644151	0.00133116	0.0530091	0.0173248
chr16	31121031	31121118	6440139	0	+	0.413793	(0.39,0.419]	chr16	638529	7	EXON_MRNA	EXON_MRNA:INTRON	KAT8	ENSG00000103510.20	ENST00000543774.6:ENST00000219797.9:ENST00000448516.6:ENST00000539683.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	109	2	5.69518	6.055455	6.41573	0.00718148	0.00302238	0.056408	0.0305643
chr6	3146253	3146352	2828601	0	+	0.636364	(0.58,1]	chr6	277604	54	INTRON	INTRON	BPHL	ENSG00000137274.13	ENST00000434640.5:ENST00000430655.6:ENST00000424847.6:ENST00000433912.5:ENST00000380379.10:ENST00000490918.5:ENST00000380375.4:ENST00000488487.2:ENST00000423798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	107	2	5.54978	6.05517	6.56056	0.00171861	0.00165911	0.025659	0.0202545
chr4	884885	884984	2178451	0	-	0.454545	(0.45,0.485]	chr4	220625	4	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5	protein_coding	protein_coding	protein_coding	protein_coding	0	107	2	5.54186	6.05469	6.56752	0.0243502	2.2698e-4	0.106588	0.00495264
chr14	104890739	104890836	5926133	0	+	0.525773	(0.523,0.58]	chr14	579999	6	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	103	2	5.91127	6.054505	6.19774	0.0072907	0.00111349	0.0567247	0.0152496
chr18	6139494	6139594	7111110	0	-	0.53	(0.523,0.58]	chr18	723852	8	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000400105.6:ENST00000317931.12:ENST00000400104.7	protein_coding	protein_coding	protein_coding	protein_coding	0	114	2	5.44845	6.054445	6.66044	0.00361636	0.00312705	0.0356998	0.0342681
chr3	101586303	101586400	1523752	0	+	0.412371	(0.39,0.419]	chr3	162106	4	INTRON	INTRON	PCNP	ENSG00000081154.12	ENST00000265260.8:ENST00000498274.5:ENST00000460231.5:ENST00000469941.5:ENST00000486406.5:ENST00000470490.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	104	2	5.88826	6.054119999999999	6.21998	0.0169925	8.22163e-4	0.0889149	0.0124043
chr5	176577798	176577898	2596821	0	+	0.59	(0.58,1]	chr5	257709	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDHR2	ENSG00000074276.11	ENST00000510636.5:ENST00000261944.10:ENST00000506348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	98	2	5.92528	6.05389	6.1825	0.0062948	2.66047e-4	0.0523832	0.00556524
chr22	50682839	50682939	7754998	0	+	0.54	(0.523,0.58]	chr22	812717	1	SS3_PROX	SS3_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	102	2	5.82039	6.05359	6.28679	0.0139724	3.97355e-4	0.0805959	0.00741985
chr1	43560718	43560818	107046	0	+	0.63	(0.58,1]	chr1	13192	64	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	278	2	4.41733	6.053515	7.6897	1.35209e-4	1.14073e-4	0.00645702	0.00302466
chr14	104890643	104890739	5926132	0	+	0.552083	(0.523,0.58]	chr14	579999	5	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	105	2	5.77287	6.053165	6.33346	0.00571732	0.00160162	0.0498083	0.0197827
chr12	132530180	132530279	5352917	0	+	0.626263	(0.58,1]	chr12	523670	18	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.89541	6.053045	6.21068	0.0066708	2.44053e-4	0.0540577	0.00522003
chr13	97345905	97346004	5632044	0	+	0.323232	(0.29,0.33]	chr13	553194	23	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	105	2	5.59406	6.05303	6.512	0.0184845	2.36916e-4	0.0928429	0.00511363
chr15	28653574	28653673	6068894	0	+	0.656566	(0.58,1]	chr15	596168	16	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	0	98	2	6.01134	6.05292	6.0945	0.00531709	3.47472e-4	0.047841	0.00673552
chr9	34087858	34087956	4295283	0	-	0.489796	(0.485,0.523]	chr9	410476	16	UTR3	UTR3:EXON_MRNA	DCAF12	ENSG00000198876.13	ENST00000361264.9	protein_coding	protein_coding	protein_coding	protein_coding	2	299	2	4.79157	6.052795	7.31402	8.70042e-4	6.24522e-5	0.0175759	0.00192593
chr17	7108095	7108184	6847712	0	-	0.617977	(0.58,1]	chr17	693414	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	205	2	5.04993	6.05256	7.05519	5.81818e-4	6.39597e-5	0.0141176	0.00196197
chr2	134450539	134450638	898753	0	+	0.616162	(0.58,1]	chr2	101298	18	UTR3	UTR3:EXON_MRNA	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	1	205	2	5.16129	6.052075	6.94286	7.47593e-4	4.39806e-5	0.0161372	0.00149886
chr16	87740023	87740123	6656481	0	-	0.59	(0.58,1]	chr16	665892	90	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	98	2	6.03893	6.051435	6.06394	0.00503456	3.80904e-4	0.0464858	0.00721291
chr20	62272659	62272759	7506833	0	+	0.47	(0.45,0.485]	chr20	782704	4	SS5_PROX	SS5_PROX:INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000642957.1:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	106	2	5.75605	6.0512999999999995	6.34655	0.00642055	0.002004	0.0529785	0.0230381
chr12	23950868	23950876	5388538	0	-	0.375	(0.36,0.39]	chr12	528207	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SOX5	ENSG00000134532.19	ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2:ENST00000536729.2:ENST00000446891.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	123	2	5.1004	6.050635	7.00087	0.0526991	9.70744e-5	0.14912	0.00267267
chr16	85387037	85387137	6516941	0	+	0.57	(0.523,0.58]	chr16	646391	277	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	112	2	5.49322	6.05054	6.60786	0.00345115	0.00324246	0.037649	0.0319521
chr2	101032850	101032944	1238901	0	-	0.553191	(0.523,0.58]	chr2	133727	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TBC1D8	ENSG00000204634.13	ENST00000409318.2:ENST00000376840.8:ENST00000473937.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	295	2	4.60221	6.05022	7.49823	6.06692e-4	1.08479e-4	0.0144497	0.00291217
chr8	38770492	38770592	3802260	0	+	0.55	(0.523,0.58]	chr8	365828	127	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	295	2	4.60221	6.05022	7.49823	6.06692e-4	1.08479e-4	0.0144497	0.00291217
chr7	47351734	47351834	3587308	0	-	0.58	(0.523,0.58]	chr7	346030	50	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	579	2	5.72549	6.049944999999999	6.3744	3.05708e-4	1.56557e-6	0.00996463	1.41032e-4
chr10	46806311	46806410	4484746	0	+	0.555556	(0.523,0.58]	chr10	428921	40	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000688259.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	104	2	5.62258	6.04985	6.47712	0.0193313	2.30436e-4	0.0954446	0.00498593
chr6	601819	601918	3078178	0	-	0.525253	(0.523,0.58]	chr6	299385	22	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	0	104	2	5.62258	6.04985	6.47712	0.0193313	2.30436e-4	0.0954446	0.00498593
chr7	101825673	101825773	3434065	0	+	0.38	(0.36,0.39]	chr7	332510	63	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	282	2	4.46219	6.04931	7.63643	0.00501037	1.51454e-5	0.0464308	6.8895e-4
chr1	213990680	213990779	339382	0	+	0.424242	(0.419,0.45]	chr1	38089	5	INTRON	INTRON	PROX1	ENSG00000117707.16	ENST00000471129.1:ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2:ENST00000607425.1	protein_coding	protein_coding	protein_coding	protein_coding	2	671	2	5.29333	6.049085	6.8048400000000004	0.00125927	1.04345e-6	0.0215793	1.07117e-4
chr2	7039328	7039428	712665	0	+	0.43	(0.419,0.45]	chr2	83317	3	SS3_PROX	SS3_PROX:INTRON	RNF144A	ENSG00000151692.15	ENST00000320892.11:ENST00000467276.5:ENST00000432850.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	124	2	5.09133	6.04905	7.00677	0.0586308	1.1216e-4	0.155565	0.00298349
chr10	31805593	31805691	4660579	0	-	0.357143	(0.33,0.36]	chr10	444873	3	UTR3	UTR3:EXON_MRNA	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8	protein_coding	protein_coding	protein_coding	protein_coding	1	276	2	4.65915	6.048985	7.43882	0.00306541	2.19914e-5	0.0353251	9.00204e-4
chr17	38726497	38726597	6729348	0	+	0.5	(0.485,0.523]	chr17	676371	10	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	MLLT6	ENSG00000275023.5	ENST00000621332.5:ENST00000619356.1:ENST00000615741.1:ENST00000615441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	299	2	4.81699	6.0489	7.28081	9.29716e-4	5.76505e-5	0.0182159	0.0018203
chr19	4338114	4338214	7312852	0	-	0.53	(0.523,0.58]	chr19	754662	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	STAP2	ENSG00000178078.12	ENST00000594605.6:ENST00000600324.5:ENST00000599736.5:ENST00000601482.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	115	2	5.40225	6.04835	6.69445	0.00404292	0.00293287	0.0371291	0.0343709
chr18	49965415	49965514	7164279	0	-	0.424242	(0.419,0.45]	chr18	728316	20	INTRON	INTRON	MYO5B	ENSG00000167306.20	ENST00000285039.12	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	5.52073	6.048115	6.5755	0.0327198	3.64701e-4	0.122543	0.00699922
chr2	163655704	163655804	1295519	0	-	0.37	(0.36,0.39]	chr2	139073	435	INTRON	INTRON	FIGN	ENSG00000182263.14	ENST00000409634.5:ENST00000333129.4:ENST00000482917.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	105	2	5.70457	6.047885000000001	6.3912	0.022152	5.20645e-4	0.101784	0.00899129
chr7	55976036	55976135	3375026	0	+	0.383838	(0.36,0.39]	chr7	325603	105	INTRON	INTRON	NIPSNAP2	ENSG00000146729.10	ENST00000446692.5:ENST00000446778.5:ENST00000322090.8:ENST00000470036.5:ENST00000456204.5:ENST00000437587.5:ENST00000487370.5:ENST00000472404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	104	2	5.96653	6.04782	6.12911	0.0113159	0.00155347	0.0722887	0.0193429
chr16	29975048	29975148	6435811	0	+	0.47	(0.45,0.485]	chr16	637163	4	SS5_PROX	SS5_PROX:INTRON	TAOK2	ENSG00000149930.18	ENST00000308893.9:ENST00000543033.5:ENST00000279394.7	protein_coding	protein_coding	protein_coding	protein_coding	0	102	2	5.93034	6.04737	6.1644	0.0130794	6.92954e-4	0.0782396	0.0109657
chr6	169649575	169649675	3304359	0	-	0.52	(0.485,0.523]	chr6	319868	3	SS3_PROX	SS3_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	356	2	4.2394	6.0472850000000005	7.85517	2.89001e-4	1.6783e-4	0.0096494	0.00400323
chr7	893078	893158	3307715	0	+	0.5875	(0.58,1]	chr7	320474	3	INTRON	INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000407192.5:ENST00000464468.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	102	2	5.71628	6.04725	6.37822	0.00252415	0.00104668	0.031696	0.0146403
chr21	41829131	41829230	7673613	0	-	0.434343	(0.419,0.45]	chr21	801978	4	INTRON	INTRON	PRDM15	ENSG00000141956.14	ENST00000422911.6:ENST00000441787.5:ENST00000449395.6:ENST00000398548.6:ENST00000447016.6:ENST00000269844.5:ENST00000491486.5:ENST00000489661.5:ENST00000496124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	104	2	5.90909	6.047245	6.1854	0.0184411	0.00100635	0.0927235	0.0142602
chr1	100875222	100875319	552044	0	-	0.443299	(0.419,0.45]	chr1	63363	4	INTRON	INTRON	EXTL2	ENSG00000162694.14	ENST00000535414.5:ENST00000370113.7:ENST00000370114.8:ENST00000450240.2	protein_coding	protein_coding	protein_coding	protein_coding	0	104	2	6.01834	6.047145	6.07595	0.015582500000000001	0.00132452	0.0849828	0.0173138
chr12	116054186	116054286	5511722	0	-	0.42	(0.419,0.45]	chr12	542755	312	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000648737.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	104	2	6.01834	6.047145	6.07595	0.015582500000000001	0.00132452	0.0849828	0.0173138
chr22	32820095	32820195	7717810	0	+	0.6	(0.58,1]	chr22	807776	176	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	5.25731	6.04708	6.83685	0.00358178	9.44859e-4	0.0342681	0.0183873
chr16	30990344	30990443	6579784	0	-	0.646465	(0.58,1]	chr16	657721	12	UTR3	UTR3:EXON_MRNA	STX1B	ENSG00000099365.11	ENST00000215095.11	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.8019	6.04698	6.29206	0.007984	1.89825e-4	0.0596361	0.0043642
chr9	121915948	121916048	4391318	0	-	0.46	(0.45,0.485]	chr9	419121	300	INTRON	INTRON	TTLL11	ENSG00000175764.17	ENST00000321582.11:ENST00000373778.5:ENST00000687938.1:ENST00000474723.5:ENST00000411790.1:ENST00000685478.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	113	2	5.47648	6.046865	6.61725	0.0039628	0.00395394	0.0406092	0.0368027
chr18	76436947	76437047	7179489	0	-	0.62	(0.58,1]	chr18	730080	563	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	6.00079	6.0466750000000005	6.09256	0.00452436	4.59827e-4	0.0436138	0.00821903
chr3	60249628	60249728	1796103	0	-	0.48	(0.45,0.485]	chr3	186807	1689	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	102	2	5.90167	6.046585	6.1915	0.0137135	6.44145e-4	0.0799457	0.0104271
chr7	40089709	40089806	3353749	0	+	0.412371	(0.39,0.419]	chr7	324272	10	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000646039.1:ENST00000643859.1:ENST00000643915.1:ENST00000478563.2:ENST00000644221.1:ENST00000644561.1:ENST00000645826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	105	2	5.87027	6.04645	6.22263	0.00991891	0.00198333	0.0671959	0.0229039
chrX	123680652	123680752	8098882	0	-	0.41	(0.39,0.419]	chrX	844533	85	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5:ENST00000433883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	105	2	5.87027	6.04645	6.22263	0.00991891	0.00198333	0.0671959	0.0229039
chr3	98741083	98741183	1516297	0	+	0.36	(0.33,0.36]	chr3	161540	71	INTRON	INTRON	ST3GAL6	ENSG00000064225.13	ENST00000489112.5:ENST00000265261.11:ENST00000460774.5:ENST00000469105.5:ENST00000466482.5:ENST00000462152.5:ENST00000486249.5:ENST00000497008.5:ENST00000486334.6:ENST00000394162.5:ENST00000613264.5:ENST00000480133.1:ENST00000465004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	385	2	4.73616	6.046415	7.35667	0.00103133	4.98474e-5	0.019287	0.00164667
chr19	2204360	2204458	7188902	0	+	0.591837	(0.58,1]	chr19	731581	12	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	1	210	2	4.7449	6.046265	7.34763	2.99474e-4	1.74253e-4	0.00982269	0.00410754
chr2	239159249	239159348	1390289	0	-	0.555556	(0.523,0.58]	chr2	148698	21	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	101	2	5.93864	6.046155000000001	6.15367	0.0114442	5.76607e-4	0.0723462	0.00963379
chr6	601420	601519	3078174	0	-	0.535354	(0.523,0.58]	chr6	299385	18	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	0	101	2	5.93864	6.046155000000001	6.15367	0.0114442	5.76607e-4	0.0723462	0.00963379
chr5	36952017	36952117	2401508	0	+	0.55	(0.523,0.58]	chr5	239830	745	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	0	101	2	5.96674	6.04612	6.1255	0.0109075	6.23263e-4	0.0707085	0.0101764
chr17	43568500	43568600	6739250	0	+	0.36	(0.33,0.36]	chr17	678633	233	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	104	2	5.88143	6.04608	6.21073	0.00843224	0.00169367	0.0617623	0.0204799
chr16	23134053	23134153	6567704	0	-	0.44	(0.419,0.45]	chr16	655250	255	INTRON	INTRON	USP31	ENSG00000103404.15	ENST00000219689.12	protein_coding	protein_coding	protein_coding	protein_coding	1	289	2	4.6727	6.04585	7.419	0.00388822	3.4701e-5	0.0402027	0.00125791
chr10	102944503	102944603	4578584	0	+	0.34	(0.33,0.36]	chr10	437563	170	INTRON	INTRON	CNNM2	ENSG00000148842.18	ENST00000369878.9:ENST00000433628.2	protein_coding	protein_coding	protein_coding	protein_coding	0	103	2	5.97713	6.0456900000000005	6.11425	0.00993822	0.00133012	0.0672261	0.0173248
chr22	38204548	38204648	7724337	0	+	0.55	(0.523,0.58]	chr22	809114	6	INTRON	INTRON	MAFF	ENSG00000185022.12	ENST00000538999.1:ENST00000538320.5:ENST00000338483.7:ENST00000441709.1:ENST00000417948.5:ENST00000426621.6	protein_coding	protein_coding	protein_coding	protein_coding	0	105	2	5.73609	6.04549	6.35489	0.00549977	0.0017613	0.0489559	0.0211077
chr14	54757379	54757478	5821361	0	+	0.393939	(0.39,0.419]	chr14	569119	21	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555192.1	protein_coding	protein_coding	protein_coding	protein_coding	0	108	2	5.69518	6.045344999999999	6.39551	0.00743138	0.00302238	0.057548	0.0305643
chr5	38930988	38931086	2408944	0	+	0.408163	(0.39,0.419]	chr5	240314	53	INTRON	INTRON	OSMR	ENSG00000145623.13	ENST00000274276.8	protein_coding	protein_coding	protein_coding	protein_coding	0	112	2	5.37172	6.0450099999999996	6.7183	0.0367885	2.16497e-4	0.129052	0.00477728
chr13	93940435	93940535	5624918	0	+	0.33	(0.29,0.33]	chr13	553064	1095	INTRON	INTRON	GPC6	ENSG00000183098.11	ENST00000377047.9	protein_coding	protein_coding	protein_coding	protein_coding	0	126	2	4.96914	6.044735	7.12033	0.0481918	3.897e-5	0.144601	0.00136607
chr6	36066705	36066805	2904688	0	+	0.37	(0.36,0.39]	chr6	284907	70	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000622903.4:ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5:ENST00000472333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	391	2	4.35916	6.0447299999999995	7.7303	0.00270487	1.14274e-5	0.0330321	5.65297e-4
chr17	642896	642996	6823605	0	-	0.49	(0.485,0.523]	chr17	689804	97	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000680944.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000681830.1:ENST00000679959.1:ENST00000680114.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000570650.2:ENST00000679680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	105	2	5.55054	6.04471	6.53888	0.0215787	2.02788e-4	0.100612	0.0045746
chr1	27489085	27489185	431242	0	-	0.51	(0.485,0.523]	chr1	50973	598	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	0	101	2	5.93906	6.044565	6.15007	0.0113657	6.0909e-4	0.0723462	0.0100377
chr9	132632191	132632291	4424528	0	-	0.51	(0.485,0.523]	chr9	422371	1	SS3_PROX	SS3_PROX:INTRON	DDX31	ENSG00000125485.18	ENST00000372159.8	protein_coding	protein_coding	protein_coding	protein_coding	0	101	2	5.96717	6.04454	6.12191	0.0108319	6.58016e-4	0.0707085	0.0106077
chr9	6612244	6612343	4275131	0	-	0.434343	(0.419,0.45]	chr9	408387	15	INTRON	INTRON	GLDC	ENSG00000178445.10	ENST00000321612.8:ENST00000639364.1:ENST00000639954.1:ENST00000640592.1:ENST00000639840.1:ENST00000639020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	104	2	6.01795	6.043985	6.07002	0.0143746	0.00152916	0.0821732	0.0191213
chr10	76541986	76542086	4531603	0	+	0.51	(0.485,0.523]	chr10	432362	56	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593699.5:ENST00000372499.5:ENST00000496424.2:ENST00000598708.1:ENST00000488655.5:ENST00000468134.1:ENST00000597823.1:ENST00000596228.5:ENST00000483375.1:ENST00000488759.5:ENST00000493194.2:ENST00000595936.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	101	2	5.99474	6.043965	6.09319	0.0103305	7.11715e-4	0.0684871	0.0112082
chr2	10190004	10190104	718201	0	+	0.5	(0.485,0.523]	chr2	84002	339	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	101	2	5.99474	6.043965	6.09319	0.0103305	7.11715e-4	0.0684871	0.0112082
chr2	65421965	65422065	1172075	0	-	0.5	(0.485,0.523]	chr2	127582	414	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	3	442	2	4.01031	6.04378	8.07725	0.00263485	1.65376e-6	0.0325876	1.46103e-4
chr8	25239577	25239677	3774634	0	+	0.47	(0.45,0.485]	chr8	363466	543	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000410074.5:ENST00000481100.5	protein_coding	protein_coding	protein_coding	protein_coding	0	106	2	5.71928	6.043475000000001	6.36767	0.00618594	0.00219685	0.0519442	0.0245167
chr4	152782124	152782224	2148777	0	+	0.41	(0.39,0.419]	chr4	217798	15	INTRON	INTRON	ARFIP1	ENSG00000164144.16	ENST00000451320.6:ENST00000429148.6:ENST00000353617.7:ENST00000405727.6:ENST00000356064.3:ENST00000510831.5:ENST00000509413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	107	2	5.73194	6.043065	6.35419	0.0079671	0.00276973	0.0596361	0.0286873
chr5	209548	209648	2607677	0	-	0.52	(0.485,0.523]	chr5	259392	32	INTRON	INTRON	CCDC127	ENSG00000164366.4	ENST00000296824.4:ENST00000441693.2	protein_coding	protein_coding	protein_coding	protein_coding	0	101	2	6.0218	6.04284	6.06388	0.00985907	7.70737e-4	0.0670775	0.0118331
chr9	34226135	34226235	4141201	0	+	0.51	(0.485,0.523]	chr9	393829	48	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2:ENST00000359544.2	protein_coding	protein_coding	protein_coding	protein_coding	0	101	2	6.0218	6.04284	6.06388	0.00985907	7.70737e-4	0.0670775	0.0118331
chr16	74932481	74932580	6643622	0	-	0.464646	(0.45,0.485]	chr16	664275	18	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568462.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	241	2	4.4494	6.042809999999999	7.63622	7.63833e-4	5.6521e-4	0.0138732	0.0117723
chr1	50472266	50472366	474839	0	-	0.38	(0.36,0.39]	chr1	56726	197	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000494400.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	105	2	5.67128	6.042645	6.41401	0.023302	4.90006e-4	0.103669	0.00861813
chr17	80025201	80025301	6982168	0	-	0.62	(0.58,1]	chr17	713081	112	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.66698	6.042619999999999	6.41826	0.0102927	1.27804e-4	0.0684871	0.00328053
chr9	134341330	134341430	4260836	0	+	0.66	(0.58,1]	chr9	406311	143	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	107	2	5.50497	6.04222	6.57947	0.00187297	0.00165065	0.0250898	0.0219434
chr17	72949971	72950071	6967790	0	-	0.37	(0.36,0.39]	chr17	710526	17	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5:ENST00000582179.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	105	2	5.83748	6.042125	6.24677	0.00931845	0.00213426	0.0649153	0.0240825
chr11	20100636	20100736	4820036	0	+	0.47	(0.45,0.485]	chr11	461596	3	SS3_PROX	SS3_PROX:INTRON	NAV2	ENSG00000166833.23	ENST00000360655.8:ENST00000396085.6:ENST00000349880.9:ENST00000396087.7:ENST00000533917.5	protein_coding	protein_coding	protein_coding	protein_coding	0	103	2	5.89443	6.041925	6.18942	0.00844217	0.00141013	0.0617623	0.0180659
chr13	100292923	100293023	5645030	0	+	0.33	(0.29,0.33]	chr13	554060	192	INTRON	INTRON	PCCA	ENSG00000175198.17	ENST00000376286.8:ENST00000376279.7:ENST00000376285.6:ENST00000647303.1:ENST00000637657.1:ENST00000636366.1:ENST00000636475.1:ENST00000636420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	101	2	6.02857	6.0419	6.05523	0.00839544	9.04417e-4	0.0616149	0.0132704
chr16	78634746	78634846	6500761	0	+	0.51	(0.485,0.523]	chr16	645695	600	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000684632.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6:ENST00000408984.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	104	2	5.58723	6.04143	6.49563	0.0203514	2.29841e-4	0.0979211	0.00498593
chr12	1440591	1440691	5154801	0	+	0.51	(0.485,0.523]	chr12	500919	94	INTRON	INTRON	ERC1	ENSG00000082805.21	ENST00000543086.7:ENST00000360905.9:ENST00000542302.6:ENST00000546231.6:ENST00000347735.10:ENST00000397203.7:ENST00000440394.7:ENST00000545948.5:ENST00000589028.6:ENST00000355446.9:ENST00000538971.6:ENST00000588412.5:ENST00000539802.2:ENST00000691140.1:ENST00000515210.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	101	2	6.03396	6.041155	6.04835	0.00941539	8.35707e-4	0.0653252	0.012554
chr13	113054201	113054301	5656178	0	+	0.49	(0.485,0.523]	chr13	555187	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	102	2	5.90769	6.0409749999999995	6.17426	0.00754939	0.0011708	0.0578091	0.0157899
chr4	869272	869369	2178285	0	-	0.484536	(0.45,0.485]	chr4	220580	7	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	102	2	5.99015	6.040725	6.0913	0.00998516	0.00110015	0.0673647	0.015136
chr1	204148532	204148627	644765	0	-	0.494737	(0.485,0.523]	chr1	76383	11	INTRON	INTRON	ETNK2	ENSG00000143845.15	ENST00000367202.9:ENST00000367201.7:ENST00000444817.1	protein_coding	protein_coding	protein_coding	protein_coding	0	104	2	5.76929	6.0407150000000005	6.31214	0.00589975	0.00167976	0.0506158	0.0203806
chr4	1879721	1879820	1996070	0	+	0.515152	(0.485,0.523]	chr4	203459	78	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	104	2	5.76929	6.0407150000000005	6.31214	0.00589975	0.00167976	0.0506158	0.0203806
chr8	502989	503089	3931434	0	-	0.53	(0.523,0.58]	chr8	375980	80	INTRON	INTRON	TDRP	ENSG00000180190.13	ENST00000523656.5:ENST00000324079.11	protein_coding	protein_coding	protein_coding	protein_coding	0	101	2	6.00701	6.040505	6.074	0.00906277	8.61362e-4	0.0637469	0.0127848
chr5	1327124	1327222	2609086	0	-	0.520408	(0.485,0.523]	chr5	259719	8	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	224	2	5.30399	6.04028	6.77657	0.00248912	5.34542e-5	0.0315244	0.0017251
chr10	47533081	47533181	4680513	0	-	0.43	(0.419,0.45]	chr10	446443	92	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	1	236	2	5.14118	6.040255	6.93933	0.00339529	1.50573e-4	0.0372808	0.00368901
chr2	43337636	43337735	1132686	0	-	0.414141	(0.39,0.419]	chr2	123950	40	INTRON	INTRON	THADA	ENSG00000115970.19	ENST00000405975.7:ENST00000407351.5:ENST00000398653.5:ENST00000405006.8:ENST00000486735.5:ENST00000473004.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	104	2	5.73575	6.039820000000001	6.34389	0.0215144	5.94847e-4	0.100612	0.0098913
chr1	29237017	29237117	78378	0	+	0.45	(0.419,0.45]	chr1	8913	3	SS5_PROX	SS5_PROX:INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2	protein_coding	protein_coding	protein_coding	protein_coding	0	110	2	5.44447	6.03953	6.63459	0.0364384	3.11318e-4	0.128173	0.00624487
chr18	76967316	76967415	7096871	0	+	0.434343	(0.419,0.45]	chr18	722760	61	INTRON	INTRON	ZNF236	ENSG00000130856.17	ENST00000320610.14:ENST00000543926.6:ENST00000253159.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	110	2	5.44447	6.03953	6.63459	0.0364384	3.11318e-4	0.128173	0.00624487
chr1	48226378	48226477	120963	0	+	0.616162	(0.58,1]	chr1	15165	12	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	98	2	5.93474	6.039505	6.14427	0.00407804	5.58693e-4	0.0413652	0.00944382
chr21	45444232	45444332	7630705	0	+	0.65	(0.58,1]	chr21	797656	384	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.93474	6.039505	6.14427	0.00407804	5.58693e-4	0.0413652	0.00944382
chr13	113032878	113032977	5655958	0	+	0.606061	(0.58,1]	chr13	555157	60	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486806.1:ENST00000473345.5	protein_coding	protein_coding	protein_coding	protein_coding	0	97	2	5.95454	6.03949	6.12444	0.0059453	3.17437e-4	0.0506158	0.00632787
chr19	1172725	1172825	7305780	0	-	0.63	(0.58,1]	chr19	753058	37	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	97	2	5.95454	6.03949	6.12444	0.0059453	3.17437e-4	0.0506158	0.00632787
chr13	113021144	113021243	5655836	0	+	0.40404	(0.39,0.419]	chr13	555145	59	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	103	2	6.0264	6.039325	6.05225	0.0130948	0.00134695	0.0782739	0.0174765
chr20	58694992	58695092	7498633	0	+	0.5	(0.485,0.523]	chr20	782001	4	SS5_PROX	SS5_PROX:INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	577	2	5.59685	6.039155	6.48146	3.96654e-4	1.1675e-6	0.0113957	1.15544e-4
chr1	204225683	204225783	645039	0	-	0.38	(0.36,0.39]	chr1	76439	17	INTRON	INTRON	PLEKHA6	ENSG00000143850.16	ENST00000272203.8:ENST00000637508.1:ENST00000414478.1	protein_coding	protein_coding	protein_coding	protein_coding	0	114	2	5.28778	6.03907	6.79036	0.0407706	1.75634e-4	0.135868	0.0041174
chr3	12965102	12965201	1688780	0	-	0.434343	(0.419,0.45]	chr3	176520	41	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	104	2	5.79088	6.039	6.28712	0.022052	7.76382e-4	0.101502	0.0118807
chr10	28678273	28678373	4470346	0	+	0.65	(0.58,1]	chr10	427719	3	SS5_PROX	SS5_PROX:INTRON	BAMBI	ENSG00000095739.11	ENST00000497699.1:ENST00000375533.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	97	2	5.89541	6.038955	6.1825	0.0066708	2.66047e-4	0.0540577	0.00556524
chr6	52526109	52526209	3147938	0	-	0.48	(0.45,0.485]	chr6	307022	90	INTRON	INTRON	TRAM2	ENSG00000065308.5	ENST00000182527.4	protein_coding	protein_coding	protein_coding	protein_coding	1	224	2	4.89819	6.038845	7.1795	0.00137948	2.11565e-4	0.0226729	0.00471178
chr2	24058713	24058813	725970	0	+	0.42	(0.419,0.45]	chr2	84850	37	INTRON	INTRON	FKBP1B	ENSG00000119782.14	ENST00000380991.8:ENST00000438630.5:ENST00000380986.9:ENST00000496149.5:ENST00000452109.1:ENST00000421839.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	104	2	5.95751	6.038705	6.1199	0.0132894	0.0017735	0.0787251	0.02121
chr16	29269314	29269414	6433530	0	+	0.56	(0.523,0.58]	chr16	636745	172	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	106	2	5.65959	6.03846	6.41733	0.00490887	0.0021416	0.0457614	0.0240825
chr15	63718073	63718161	6295654	0	-	0.443182	(0.419,0.45]	chr15	620432	1	SS5_PROX	SS5_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1	protein_coding	protein_coding	protein_coding	protein_coding	0	106	2	5.79433	6.03819	6.28205	0.0102557	0.00262626	0.0684871	0.0278348
chr2	231372617	231372715	1050630	0	+	0.438776	(0.419,0.45]	chr2	114399	12	UTR3	UTR3:EXON_MRNA	ARMC9	ENSG00000135931.19	ENST00000611582.5:ENST00000684075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	106	2	5.79433	6.03819	6.28205	0.0102557	0.00262626	0.0684871	0.0278348
chr15	20441940	20442039	6202466	0	-	0.494949	(0.485,0.523]	chr15	610287	9	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000424611.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	2	363	2	3.99164	6.0381	8.08456	0.00412391	1.61436e-6	0.0415176	1.43996e-4
chr11	70535730	70535830	5059630	0	-	0.7	(0.58,1]	chr11	492663	324	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	102	2	5.67642	6.038035000000001	6.39965	0.00241374	0.00117039	0.0309229	0.0157899
chr14	104891607	104891703	5926142	0	+	0.635417	(0.58,1]	chr14	579999	15	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	102	2	5.67642	6.038035000000001	6.39965	0.00241374	0.00117039	0.0309229	0.0157899
chr19	10663019	10663118	7203434	0	+	0.464646	(0.45,0.485]	chr19	734829	71	INTRON	INTRON	ILF3	ENSG00000129351.17	ENST00000449870.5:ENST00000587928.5:ENST00000407004.7:ENST00000589998.5:ENST00000589600.5:ENST00000589283.5:ENST00000590009.5:ENST00000593199.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	119	2	5.1123	6.037705000000001	6.96311	0.0458344	7.18212e-5	0.142336	0.00214399
chr8	8832022	8832122	3935121	0	-	0.53	(0.523,0.58]	chr8	376197	100	INTRON	INTRON	MFHAS1	ENSG00000147324.11	ENST00000276282.7:ENST00000521881.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	101	2	5.9758	6.037705	6.09961	0.00866655	9.36996e-4	0.0623824	0.0135546
chr13	112971351	112971450	5655334	0	+	0.606061	(0.58,1]	chr13	555120	15	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	108	2	5.45872	6.03764	6.61656	0.00211999	0.00152464	0.0240691	0.0239744
chrX	2233924	2234024	7966177	0	-	0.39	(0.36,0.39]	chrX	834328	123	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11	protein_coding	protein_coding	protein_coding	protein_coding	0	108	2	5.65802	6.037559999999999	6.4171	0.00699528	0.003279	0.0555241	0.0322062
chr21	46548118	46548214	7634392	0	+	0.5625	(0.523,0.58]	chr21	798458	7	INTRON	INTRON	DIP2A	ENSG00000160305.18	ENST00000417564.3:ENST00000651436.1:ENST00000400274.5:ENST00000457905.7	protein_coding	protein_coding	protein_coding	protein_coding	1	223	2	4.72884	6.037445	7.34605	8.24125e-4	2.96905e-4	0.0170688	0.00603096
chr20	62958849	62958945	7508285	0	+	0.541667	(0.523,0.58]	chr20	783180	9	INTRON	INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	222	2	4.76064	6.037115	7.31359	8.79392e-4	2.70171e-4	0.0176886	0.00563203
chr15	48160503	48160602	6251439	0	-	0.323232	(0.29,0.33]	chr15	615735	3	INTRON	INTRON	MYEF2	ENSG00000104177.19	ENST00000324324.12:ENST00000267836.10:ENST00000616409.4:ENST00000561351.5:ENST00000559862.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	108	2	5.56987	6.0368949999999995	6.50392	0.00368139	0.0029307	0.0389784	0.0298918
chr21	34843499	34843599	7655379	0	-	0.51	(0.485,0.523]	chr21	801030	85	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000469087.1:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	105	2	5.5129	6.03646	6.56002	0.0229047	1.90696e-4	0.102982	0.0043642
chr15	34554555	34554654	6218164	0	-	0.515152	(0.485,0.523]	chr15	612407	2	INTRON	INTRON	GOLGA8B	ENSG00000215252.12	ENST00000683415.1:ENST00000569100.5:ENST00000484716.5:ENST00000564575.5:ENST00000566091.5:ENST00000566258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	101	2	5.97221	6.036125	6.10004	0.00860355	9.86421e-4	0.0623467	0.0140716
chr3	31688310	31688410	1727459	0	-	0.47	(0.45,0.485]	chr3	178975	38	INTRON	INTRON	OSBPL10	ENSG00000144645.15	ENST00000429492.6:ENST00000396556.7:ENST00000438237.6:ENST00000673388.1:ENST00000467598.5:ENST00000472175.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	115	2	5.38553	6.0358149999999995	6.6861	0.00490471	0.00348661	0.0422077	0.0379065
chr11	70787350	70787450	5062155	0	-	0.55	(0.523,0.58]	chr11	492701	695	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	109	2	5.53665	6.035645	6.53464	0.00395533	0.00291382	0.0406092	0.0298557
chr16	953319	953408	6531566	0	-	0.595506	(0.58,1]	chr16	648705	3	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1:ENST00000566609.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	210	2	4.69024	6.03529	7.38034	2.77767e-4	2.07711e-4	0.00947659	0.00464072
chr6	30891479	30891579	2892433	0	+	0.56	(0.523,0.58]	chr6	282169	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDR1	ENSG00000204580.14	ENST00000460944.6:ENST00000324771.12:ENST00000418800.6:ENST00000454612.6:ENST00000376569.7:ENST00000376570.8:ENST00000428153.6:ENST00000376568.8:ENST00000452441.5:ENST00000515219.5:ENST00000482873.6:ENST00000508312.5:ENST00000376567.6:ENST00000446312.5:ENST00000513240.5:ENST00000376575.7:ENST00000508472.5:ENST00000507533.1:ENST00000485023.1:ENST00000417521.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	122	2	5.20104	6.0347349999999995	6.86843	0.00648051	0.00210534	0.0503748	0.028892
chr10	79220173	79220273	4533563	0	+	0.57	(0.523,0.58]	chr10	432457	35	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	218	2	5.0452	6.03443	7.02366	0.00155872	1.14382e-4	0.0243306	0.00303044
chr9	71756475	71756575	4314674	0	-	0.45	(0.419,0.45]	chr9	412548	57	INTRON	INTRON	CEMIP2	ENSG00000135048.14	ENST00000377044.9:ENST00000377066.9:ENST00000542935.5:ENST00000543165.1:ENST00000545719.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	476	2	3.95956	6.034415	8.10927	0.00442331	4.505e-6	0.0431621	2.92688e-4
chr1	17674884	17674984	54960	0	+	0.44	(0.419,0.45]	chr1	5603	99	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	103	2	5.9918	6.033875	6.07595	0.0162379	0.00132452	0.0873195	0.0173138
chr3	72400419	72400519	1831594	0	-	0.5	(0.485,0.523]	chr3	188303	199	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	2	311	2	4.08968	6.033675000000001	7.97767	5.27938e-4	2.241e-4	0.00907245	0.00845454
chr20	32131313	32131413	7454387	0	+	0.37	(0.36,0.39]	chr20	775905	148	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000442842.5:ENST00000450829.5:ENST00000217315.9:ENST00000417389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	106	2	5.73251	6.033480000000001	6.33445	0.00804615	0.0027486	0.0600099	0.028553
chr22	36354927	36355027	7807071	0	-	0.39	(0.36,0.39]	chr22	818149	53	INTRON	INTRON	MYH9	ENSG00000100345.23	ENST00000216181.11:ENST00000685801.1:ENST00000692930.1:ENST00000685187.1:ENST00000691687.1:ENST00000685191.1:ENST00000688137.1:ENST00000401701.1:ENST00000691296.1:ENST00000456729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	106	2	5.73251	6.033480000000001	6.33445	0.00804615	0.0027486	0.0600099	0.028553
chr12	106426198	106426297	5318028	0	+	0.494949	(0.485,0.523]	chr12	517947	149	INTRON	INTRON	POLR3B	ENSG00000013503.10	ENST00000228347.9:ENST00000539066.5:ENST00000549569.1:ENST00000549195.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	101	2	5.75784	6.03312	6.3084	0.0154142	3.92049e-4	0.0849828	0.00735595
chr7	44522542	44522642	3585219	0	-	0.47	(0.45,0.485]	chr7	345622	3	SS3_PROX	SS3_PROX:INTRON	NPC1L1	ENSG00000015520.15	ENST00000381160.8:ENST00000289547.8:ENST00000546276.5	protein_coding	protein_coding	protein_coding	protein_coding	0	101	2	5.90167	6.033035	6.1644	0.0137135	6.92954e-4	0.0799457	0.0109657
chr7	75712968	75713068	3608233	0	-	0.43	(0.419,0.45]	chr7	348444	579	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6:ENST00000485723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	105	2	5.82848	6.033015	6.23755	0.0110181	0.00242141	0.0708586	0.0261589
chr19	537946	538045	7184058	0	+	0.454545	(0.45,0.485]	chr19	730433	4	INTRON	INTRON	CDC34	ENSG00000099804.9	ENST00000215574.9:ENST00000586283.6:ENST00000607527.5:ENST00000606065.3:ENST00000606400.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	101	2	5.98601	6.032955	6.0799	0.0119228	8.68466e-4	0.0741726	0.0128564
chr20	8182157	8182257	7427081	0	+	0.46	(0.45,0.485]	chr20	773674	314	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	105	2	5.71928	6.032915	6.34655	0.00642055	0.00219685	0.0529785	0.0245167
chr2	121478224	121478324	1262508	0	-	0.42	(0.419,0.45]	chr2	136083	79	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	233	2	5.00557	6.032405	7.05924	0.00275242	2.20651e-4	0.0332418	0.00485236
chr3	65419137	65419237	1809641	0	-	0.33	(0.29,0.33]	chr3	187193	173	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5	protein_coding	protein_coding	protein_coding	protein_coding	3	360	2	4.02492	6.03189	8.03886	3.39143e-4	1.62936e-4	0.00716861	0.00664617
chr6	158020986	158021086	3059702	0	+	0.47	(0.45,0.485]	chr6	297373	28	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	0	101	2	6.01306	6.03183	6.0506	0.0113949	9.38528e-4	0.0723462	0.0135546
chr14	99403427	99403526	6051071	0	-	0.454545	(0.45,0.485]	chr14	593784	28	INTRON	INTRON	SETD3	ENSG00000183576.13	ENST00000331768.10:ENST00000446066.5:ENST00000489770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	103	2	5.8269	6.031495	6.23609	0.00778782	0.00167585	0.0590114	0.0203806
chr16	85387936	85388036	6516950	0	+	0.51	(0.485,0.523]	chr16	646391	286	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	115	2	5.35096	6.03128	6.7116	0.0047171	0.00281636	0.0413976	0.0336649
chr5	38824008	38824107	2643230	0	-	0.525253	(0.523,0.58]	chr5	262457	9	INTRON	INTRON	OSMR-DT	ENSG00000249740.4	ENST00000662290.1:ENST00000636516.2:ENST00000685305.1:ENST00000513480.1:ENST00000688648.1:ENST00000654447.1:ENST00000660306.1	lncRNA	lncRNA	lncRNA	lncRNA	0	103	2	5.77287	6.03125	6.28963	0.00618741	0.00160162	0.0519442	0.0197827
chr12	132742272	132742367	5539923	0	-	0.315789	(0.29,0.33]	chr12	546701	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ANKLE2	ENSG00000176915.15	ENST00000357997.10:ENST00000539605.5:ENST00000439231.6:ENST00000538591.5:ENST00000535036.5:ENST00000545623.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	100	2	5.91726	6.03097	6.14468	0.010702	6.61382e-4	0.0701493	0.0106558
chr16	25138479	25138578	6426863	0	+	0.50505	(0.485,0.523]	chr16	635895	56	INTRON	INTRON	LCMT1	ENSG00000205629.12	ENST00000380962.9:ENST00000564011.5:ENST00000380966.8:ENST00000399069.8:ENST00000577157.1:ENST00000570981.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	102	2	5.84014	6.03092	6.2217	0.00693912	0.00139792	0.0553898	0.0179863
chr17	81139098	81139198	6982893	0	-	0.52	(0.485,0.523]	chr17	713268	42	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	102	2	5.84014	6.03092	6.2217	0.00693912	0.00139792	0.0553898	0.0179863
chr12	43983432	43983532	5208405	0	+	0.39	(0.36,0.39]	chr12	506272	387	INTRON	INTRON	TMEM117	ENSG00000139173.10	ENST00000266534.8:ENST00000551577.5:ENST00000546868.5:ENST00000550495.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	105	2	5.6023	6.0304400000000005	6.45858	0.0258522	4.35017e-4	0.109555	0.007918
chr7	96209377	96209477	3642387	0	-	0.28	[0,0.29]	chr7	350726	4	SS3_PROX	SS3_PROX:INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000472162.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	98	2	5.94783	6.030395	6.11296	0.00660506	5.30102e-4	0.0539418	0.00909661
chr21	29048084	29048172	7602501	0	+	0.511364	(0.485,0.523]	chr21	794359	4	INTRON	INTRON	USP16	ENSG00000156256.15	ENST00000399975.7:ENST00000334352.8:ENST00000474835.5:ENST00000399976.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	100	2	5.96717	6.03018	6.09319	0.0108319	7.11715e-4	0.0707085	0.0112082
chr5	140510777	140510874	2552437	0	+	0.453608	(0.45,0.485]	chr5	253394	2	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000360839.7:ENST00000421134.5:ENST00000246149.10:ENST00000412116.5:ENST00000431508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	101	2	6.02069	6.03015	6.03961	0.0108974	0.00101549	0.0707085	0.0143256
chr7	893539	893639	3307720	0	+	0.66	(0.58,1]	chr7	320475	4	SS3_PROX	SS3_PROX:INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000407192.5:ENST00000464468.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	98	2	5.86553	6.029865	6.1942	0.00368616	6.8352e-4	0.0389784	0.0108717
chr2	239221612	239221712	1390920	0	-	0.47	(0.45,0.485]	chr2	148726	307	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000496347.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	104	2	5.75605	6.0297149999999995	6.30338	0.00692617	0.002004	0.0553898	0.0230381
chr12	46518101	46518201	5218373	0	+	0.39	(0.36,0.39]	chr12	506656	230	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2	lncRNA	lncRNA	lncRNA	lncRNA	2	401	2	4.5442	6.0296400000000006	7.51508	0.0019087	2.17437e-5	0.0273609	8.95039e-4
chr9	137569929	137570028	4435763	0	-	0.525253	(0.523,0.58]	chr9	424466	44	INTRON	INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000475100.5:ENST00000472113.5:ENST00000485189.5:ENST00000467768.5:ENST00000477690.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	100	2	5.85087	6.029635	6.2084	0.0132767	4.95211e-4	0.0787251	0.00865935
chr7	96164727	96164827	3641927	0	-	0.38	(0.36,0.39]	chr7	350666	177	INTRON	INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000490072.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	102	2	5.91828	6.02951	6.14074	0.0158902	0.0010006	0.0859576	0.0142243
chr15	56241724	56241824	6275473	0	-	0.34	(0.33,0.36]	chr15	618444	486	INTRON	INTRON	RFX7	ENSG00000181827.16	ENST00000674082.1:ENST00000559447.8:ENST00000673997.1	protein_coding	protein_coding	protein_coding	protein_coding	1	228	2	4.75564	6.029305	7.30297	0.00114387	3.6287e-4	0.0204418	0.00698402
chr1	95237960	95238054	190241	0	+	0.446809	(0.419,0.45]	chr1	20626	1	INTRON	INTRON	TLCD4-RWDD3:RWDD3	ENSG00000271092.5:ENSG00000122481.17	ENST00000604534.5:ENST00000604203.1:ENST00000370202.5:ENST00000263893.10:ENST00000492639.5:ENST00000495272.5:ENST00000497058.5:ENST00000473397.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	103	2	5.82136	6.029260000000001	6.23716	0.0210659	8.82327e-4	0.0996078	0.0129974
chr13	51802248	51802348	5716318	0	-	0.54	(0.523,0.58]	chr13	560865	22	INTRON	INTRON	DHRS12	ENSG00000102796.12	ENST00000444610.8:ENST00000650833.1:ENST00000682342.1:ENST00000218981.5:ENST00000280056.6:ENST00000490949.5:ENST00000497151.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	229	2	4.54015	6.02876	7.51737	5.83644e-4	5.15707e-4	0.0141349	0.00894095
chr4	124708699	124708799	2320517	0	-	0.39	(0.36,0.39]	chr4	233240	294	INTRON	INTRON	ANKRD50	ENSG00000151458.12	ENST00000504087.6:ENST00000515641.1	protein_coding	protein_coding	protein_coding	protein_coding	0	103	2	5.90345	6.028435	6.15342	0.0108737	0.00181603	0.0707085	0.0215865
chr13	113054001	113054101	5656176	0	+	0.62	(0.58,1]	chr13	555186	3	SS3_PROX	SS3_PROX:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	107	2	5.45872	6.028425	6.59813	0.00211999	0.00158605	0.0245893	0.0239744
chr9	124491428	124491528	4402637	0	-	0.67	(0.58,1]	chr9	419810	2	SS3_PROX	SS3_PROX:INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	2	269	2	4.76517	6.028285	7.2914	3.40674e-4	3.50987e-5	0.010549	0.00126414
chr5	34762904	34763004	2398846	0	+	0.43	(0.419,0.45]	chr5	239476	49	INTRON	INTRON	RAI14	ENSG00000039560.14	ENST00000265109.8:ENST00000514527.5:ENST00000510319.5:ENST00000513974.5:ENST00000512629.5:ENST00000428746.6:ENST00000514873.5:ENST00000508777.5:ENST00000503673.5:ENST00000504052.5:ENST00000512305.5:ENST00000514036.5:ENST00000515799.5:ENST00000508315.5:ENST00000515448.5:ENST00000503222.5:ENST00000512625.5:ENST00000506376.1:ENST00000507502.5:ENST00000502736.5:ENST00000507276.5:ENST00000509247.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	110	2	5.57051	6.02827	6.48603	0.00734278	0.00441471	0.0570055	0.0393688
chr7	73598213	73598303	3602838	0	-	0.466667	(0.45,0.485]	chr7	347628	1	INTRON	INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	615	2	5.24034	6.02816	6.81598	9.59328e-4	4.9877e-7	0.0185595	6.61662e-5
chrX	47219305	47219405	7877796	0	+	0.57	(0.523,0.58]	chrX	825682	2	SS5_PROX	SS5_PROX:INTRON	CDK16	ENSG00000102225.17	ENST00000517997.5:ENST00000517479.1:ENST00000457458.6:ENST00000522883.1:ENST00000520295.5:ENST00000357227.9:ENST00000519758.5:ENST00000520893.5:ENST00000517426.5:ENST00000522234.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	100	2	6.00701	6.027465	6.04792	0.00948306	8.61362e-4	0.0656057	0.0127848
chr2	46332293	46332393	784991	0	+	0.43	(0.419,0.45]	chr2	89746	340	INTRON	INTRON	EPAS1	ENSG00000116016.14	ENST00000460015.1:ENST00000449347.5:ENST00000263734.5:ENST00000467888.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	105	2	5.79433	6.0271550000000005	6.25998	0.0106277	0.00262626	0.0698136	0.0278348
chr5	1327615	1327714	2609091	0	-	0.50505	(0.485,0.523]	chr5	259719	13	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	222	2	5.29324	6.0269200000000005	6.7606	0.00256606	5.52772e-5	0.0320885	0.00176494
chr3	58009855	58009955	1483052	0	+	0.53	(0.523,0.58]	chr3	159572	6	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	226	2	4.59411	6.026655	7.4592	6.56487e-4	4.40994e-4	0.0150669	0.00800597
chr19	17484813	17484909	7220781	0	+	0.5625	(0.523,0.58]	chr19	738265	3	INTRON	INTRON	SLC27A1	ENSG00000130304.17	ENST00000600277.5:ENST00000598424.5:ENST00000252595.12:ENST00000599380.5:ENST00000600297.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	104	2	5.69834	6.026615	6.35489	0.00549977	0.00194036	0.0489559	0.0225083
chr1	61812424	61812524	150645	0	+	0.52	(0.485,0.523]	chr1	17332	35	INTRON	INTRON	PATJ	ENSG00000132849.22	ENST00000371158.6:ENST00000484562.5:ENST00000459752.5:ENST00000635214.1:ENST00000642238.2:ENST00000635023.1:ENST00000484937.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	107	2	5.57523	6.026415	6.4776	0.00436205	0.00274261	0.0427656	0.028553
chr17	35072555	35072655	6888031	0	-	0.41	(0.39,0.419]	chr17	699071	25	INTRON	INTRON	RFFL	ENSG00000092871.17	ENST00000315249.11:ENST00000584655.5:ENST00000447669.6:ENST00000584541.1:ENST00000414419.6:ENST00000581265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	102	2	6.02618	6.0262899999999995	6.0264	0.0136549	0.00134695	0.0798074	0.0174765
chr4	2825785	2825875	2000376	0	+	0.655556	(0.58,1]	chr4	203974	2	INTRON	INTRON	SH3BP2	ENSG00000087266.17	ENST00000503393.8:ENST00000504294.5:ENST00000508385.5:ENST00000511663.5:ENST00000512014.5:ENST00000435136.8:ENST00000511185.5:ENST00000511747.6:ENST00000356331.9:ENST00000515737.5:ENST00000515183.5:ENST00000505941.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	100	2	5.51813	6.0262150000000005	6.5343	0.013519	8.82891e-5	0.0792526	0.00248664
chr11	68349633	68349731	4882454	0	+	0.653061	(0.58,1]	chr11	470548	10	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	104	2	5.54978	6.02604	6.5023	0.00194503	0.00165911	0.0275844	0.0202545
chr5	1327812	1327910	2609093	0	-	0.530612	(0.523,0.58]	chr5	259719	15	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	225	2	5.40856	6.02584	6.64312	0.00323048	3.68325e-5	0.0362983	0.00131223
chr10	131958642	131958742	4616614	0	+	0.59	(0.58,1]	chr10	441116	28	UTR3	UTR3:EXON_MRNA	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	100	2	5.71628	6.0253250000000005	6.33437	0.00276493	0.00104668	0.0332418	0.0146403
chr13	100179689	100179788	5643889	0	+	0.474747	(0.45,0.485]	chr13	554018	182	INTRON	INTRON	PCCA	ENSG00000175198.17	ENST00000376286.8:ENST00000376279.7:ENST00000376285.6:ENST00000647303.1:ENST00000637657.1:ENST00000636366.1:ENST00000636475.1:ENST00000636420.1:ENST00000637358.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	101	2	5.95894	6.02512	6.0913	0.00998516	0.00119342	0.0673647	0.016037
chr17	642996	643095	6823606	0	-	0.434343	(0.419,0.45]	chr17	689804	98	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000680944.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000681830.1:ENST00000679959.1:ENST00000680114.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000570650.2:ENST00000679680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	106	2	5.55739	6.0250699999999995	6.49275	0.0310506	4.54324e-4	0.119758	0.00818426
chr19	41326436	41326535	7381063	0	-	0.575758	(0.523,0.58]	chr19	765964	234	INTRON	INTRON	TGFB1	ENSG00000105329.11	ENST00000598758.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	100	2	5.9758	6.0249	6.074	0.00906277	9.36996e-4	0.0637469	0.0135546
chr10	79202984	79203083	4533388	0	+	0.626263	(0.58,1]	chr10	432445	9	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	112	2	5.31036	6.024845	6.73933	0.00312721	0.00116939	0.0311915	0.0206836
chr18	77091506	77091604	7181232	0	-	0.591837	(0.58,1]	chr18	730167	40	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000580402.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1:ENST00000583798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	110	2	5.36153	6.024760000000001	6.68799	0.00273899	0.00130716	0.028553	0.0220198
chr13	113589042	113589142	5658890	0	+	0.58	(0.523,0.58]	chr13	555775	28	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	217	2	5.10836	6.024710000000001	6.94106	0.00183008	9.41855e-5	0.0266451	0.00261955
chr20	35050991	35051091	7550845	0	-	0.43	(0.419,0.45]	chr20	788320	6	INTRON	INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	1	237	2	4.62855	6.023975	7.4194	0.00144685	6.21482e-4	0.023316	0.0101764
chr17	32551533	32551633	6884052	0	-	0.57	(0.523,0.58]	chr17	698835	546	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000577352.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	268	2	4.83582	6.02394	7.21206	0.00188333	2.49617e-5	0.0271069	9.86867e-4
chr12	132793169	132793267	5540393	0	-	0.734694	(0.58,1]	chr12	546816	15	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	204	2	4.8147	6.023795	7.23289	3.89345e-4	1.38991e-4	0.0113333	0.00348143
chr13	33214699	33214798	5684744	0	-	0.454545	(0.45,0.485]	chr13	558196	88	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	588	2	5.62762	6.02378	6.41994	4.40657e-4	1.83095e-6	0.0120637	1.56478e-4
chr10	131957650	131957749	4616604	0	+	0.606061	(0.58,1]	chr10	441116	18	UTR3	UTR3:EXON_MRNA	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	96	2	5.98322	6.02358	6.06394	0.00562007	3.80904e-4	0.0493906	0.00721291
chr1	61119525	61119625	146475	0	+	0.32	(0.29,0.33]	chr1	17144	73	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	123	2	4.96914	6.0231449999999995	7.07715	0.0481918	4.44623e-5	0.144601	0.00150854
chr19	1170339	1170438	7305756	0	-	0.707071	(0.58,1]	chr19	753058	13	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	97	2	5.90055	6.02241	6.14427	0.00407804	6.1741e-4	0.0413652	0.0101143
chr10	79218473	79218573	4533546	0	+	0.35	(0.33,0.36]	chr10	432457	18	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	102	2	5.88143	6.022365	6.1633	0.00914439	0.00169367	0.0642449	0.0204799
chr13	72782849	72782922	5609770	0	+	0.493151	(0.485,0.523]	chr13	552485	1	INTRON	INTRON	PIBF1	ENSG00000083535.16	ENST00000326291.11:ENST00000617689.4:ENST00000489797.1:ENST00000615625.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	103	2	5.73251	6.022325	6.31214	0.00589975	0.00184599	0.0506158	0.0217471
chr2	20668226	20668322	724973	0	+	0.614583	(0.58,1]	chr2	84770	2	INTRON	INTRON	GDF7	ENSG00000143869.7	ENST00000272224.5	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.75506	6.0221	6.28914	0.00303562	9.38062e-4	0.0350226	0.0135546
chr4	914628	914720	2178768	0	-	0.695652	(0.58,1]	chr4	220690	6	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000512325.3:ENST00000510022.5:ENST00000511229.5:ENST00000511983.5:ENST00000628912.1:ENST00000513935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	96	2	6.01134	6.022024999999999	6.03271	0.00531709	4.18183e-4	0.047841	0.00770005
chr7	130047677	130047777	3708059	0	-	0.47	(0.45,0.485]	chr7	356333	18	INTRON	INTRON	ZC3HC1	ENSG00000091732.17	ENST00000311873.9:ENST00000358303.9:ENST00000360708.9:ENST00000467642.5:ENST00000648450.1:ENST00000481503.5:ENST00000471022.5:ENST00000483827.1:ENST00000480193.5:ENST00000470651.1:ENST00000484432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	101	2	5.92705	6.021755000000001	6.11646	0.00956667	0.00129636	0.0658012	0.0170746
chr17	748691	748785	6824474	0	-	0.553191	(0.523,0.58]	chr17	689919	8	UTR5	UTR5:EXON_MRNA:INTRON	GEMIN4	ENSG00000179409.11	ENST00000319004.6:ENST00000576778.1:ENST00000437269.1:ENST00000573482.5:ENST00000570364.5:ENST00000576383.1:ENST00000574958.1	protein_coding	protein_coding	protein_coding	protein_coding	0	101	2	5.65749	6.0212900000000005	6.38509	0.0182707	3.00426e-4	0.0921579	0.00607383
chr6	35494200	35494300	3125637	0	-	0.54	(0.523,0.58]	chr6	304825	71	INTRON	INTRON	TEAD3	ENSG00000007866.22	ENST00000338863.13:ENST00000402886.9:ENST00000639578.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	101	2	5.65749	6.0212900000000005	6.38509	0.0182707	3.00426e-4	0.0921579	0.00607383
chr5	145832762	145832862	2783794	0	-	0.5	(0.485,0.523]	chr5	272885	62	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000683046.1:ENST00000334744.8:ENST00000394450.6:ENST00000505416.5:ENST00000511435.1:ENST00000515475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	112	2	5.39869	6.02112	6.64355	0.00421243	0.00320229	0.0380601	0.0361639
chr12	125110132	125110231	5349399	0	+	0.575758	(0.523,0.58]	chr12	523161	25	INTRON	INTRON	AACS	ENSG00000081760.17	ENST00000316519.11:ENST00000441247.6:ENST00000316543.14	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	101	2	5.84373	6.020735	6.19774	0.0072907	0.00133116	0.0567247	0.0173248
chr16	81566076	81566176	6508954	0	+	0.57	(0.523,0.58]	chr16	645911	702	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	101	2	5.84373	6.020735	6.19774	0.0072907	0.00133116	0.0567247	0.0173248
chr22	19823672	19823772	7764464	0	-	0.49	(0.485,0.523]	chr22	813913	19	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	100	2	5.94031	6.020175	6.10004	0.00860355	0.00107389	0.0623467	0.0148869
chr19	16853754	16853850	7217909	0	+	0.5625	(0.523,0.58]	chr19	737639	2	SS3_PROX	SS3_PROX:INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000596802.5:ENST00000596638.1	protein_coding	protein_coding	protein_coding	protein_coding	1	229	2	5.5056	6.02012	6.53464	0.00395533	2.70538e-5	0.0406092	0.00104594
chr10	100998784	100998882	4570109	0	+	0.561224	(0.523,0.58]	chr10	436338	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	LZTS2	ENSG00000107816.17	ENST00000426584.5:ENST00000370223.7:ENST00000489526.1:ENST00000429732.5:ENST00000481129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	265	2	4.76268	6.020099999999999	7.27752	0.00217643	2.03194e-5	0.0293132	8.47843e-4
chr16	78954318	78954418	6503962	0	+	0.45	(0.419,0.45]	chr16	645717	1740	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	240	2	5.34223	6.02008	6.69793	0.00514373	8.4747e-5	0.0471181	0.00242262
chr5	43691053	43691152	2416594	0	+	0.474747	(0.45,0.485]	chr5	240955	129	INTRON	INTRON	NNT	ENSG00000112992.18	ENST00000264663.9:ENST00000652986.1:ENST00000670904.1:ENST00000653251.1:ENST00000654405.1:ENST00000344920.9:ENST00000657973.1:ENST00000654931.1:ENST00000512996.6:ENST00000658729.1:ENST00000660676.1:ENST00000671668.1:ENST00000662525.1:ENST00000669601.1:ENST00000656666.1:ENST00000503059.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	102	2	5.8269	6.019925000000001	6.21295	0.00810629	0.00167585	0.0602166	0.0203806
chr1	24635976	24636075	63022	0	+	0.454545	(0.45,0.485]	chr1	6738	2	INTRON	INTRON	SRRM1	ENSG00000133226.18	ENST00000478890.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	110	2	5.47648	6.01992	6.56336	0.00436001	0.0039628	0.0427656	0.0368027
chr15	28216401	28216500	6207135	0	-	0.646465	(0.58,1]	chr15	611111	2	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	0	96	2	6.00079	6.0198599999999995	6.03893	0.00503456	4.59827e-4	0.0464858	0.00821903
chr20	18686642	18686742	7444299	0	+	0.44	(0.419,0.45]	chr20	774758	541	INTRON	INTRON	ENSG00000284776:DTD1	ENSG00000284776.1:ENSG00000125821.13	ENST00000618693.4:ENST00000647441.1:ENST00000377452.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	102	2	5.9918	6.01952	6.04724	0.0162379	0.00142238	0.0873195	0.0181715
chrX	139896559	139896659	8119598	0	-	0.47	(0.45,0.485]	chrX	845912	644	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	100	2	5.90167	6.0192250000000005	6.13678	0.0137135	7.46272e-4	0.0799457	0.0115813
chr20	8275301	8275400	7428015	0	+	0.363636	(0.36,0.39]	chr20	773686	185	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	103	2	5.83748	6.019165	6.20085	0.0100561	0.00213426	0.0677306	0.0240825
chr22	32670858	32670958	7791367	0	-	0.57	(0.523,0.58]	chr22	817442	406	INTRON	INTRON	SYN3	ENSG00000185666.15	ENST00000358763.7:ENST00000462268.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	104	2	5.47382	6.018725	6.56363	0.0244797	1.79062e-4	0.106683	0.00418549
chr17	72529225	72529324	6963599	0	-	0.616162	(0.58,1]	chr17	710377	23	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	204	2	5.34941	6.0187	6.68799	0.00130716	2.31411e-5	0.0220198	9.3627e-4
chr15	82382351	82382451	6165734	0	+	0.34	(0.33,0.36]	chr15	606819	266	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	107	2	5.59003	6.018485	6.44694	0.00558656	0.00344516	0.0493906	0.0333853
chr10	19729505	19729605	4456143	0	+	0.43	(0.419,0.45]	chr10	426868	366	INTRON	INTRON	MALRD1	ENSG00000204740.11	ENST00000454679.7:ENST00000377266.7:ENST00000377265.3:ENST00000480707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	102	2	6.01795	6.0181450000000005	6.01834	0.015582500000000001	0.00152916	0.0849828	0.0191213
chr6	41520290	41520390	3131931	0	-	0.56	(0.523,0.58]	chr6	305424	250	INTRON	INTRON	FOXP4-AS1	ENSG00000234753.6	ENST00000691406.1:ENST00000440194.1	lncRNA	lncRNA	lncRNA	lncRNA	0	100	2	5.91127	6.018025	6.12478	0.00829271	0.00111349	0.0610772	0.0152496
chr11	75512230	75512329	5080438	0	-	0.454545	(0.45,0.485]	chr11	494392	29	INTRON	INTRON	GDPD5	ENSG00000158555.15	ENST00000336898.8:ENST00000532435.5:ENST00000529095.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	101	2	5.89443	6.01781	6.14119	0.00917101	0.00141013	0.064285	0.0180659
chr8	8883973	8884073	3935642	0	-	0.47	(0.45,0.485]	chr8	376201	241	INTRON	INTRON	MFHAS1	ENSG00000147324.11	ENST00000276282.7	protein_coding	protein_coding	protein_coding	protein_coding	0	101	2	5.89443	6.01781	6.14119	0.00917101	0.00141013	0.064285	0.0180659
chr3	13205125	13205225	1691193	0	-	0.56	(0.523,0.58]	chr3	176566	406	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.90997	6.017735	6.1255	0.012016	6.23263e-4	0.0743424	0.0101764
chr13	113333269	113333368	5753263	0	-	0.565657	(0.523,0.58]	chr13	564094	68	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.93864	6.01771	6.09678	0.0114442	6.74499e-4	0.0723462	0.0108081
chr12	65928310	65928410	5256487	0	+	0.51	(0.485,0.523]	chr12	512321	129	INTRON	INTRON	HMGA2	ENSG00000149948.14	ENST00000403681.7:ENST00000541363.5:ENST00000393577.7:ENST00000539662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	293	2	4.80009	6.017695	7.2353	0.00101791	6.08003e-5	0.0191524	0.00188816
chr2	73283553	73283653	1190773	0	-	0.59	(0.58,1]	chr2	129050	101	INTRON	INTRON	FBXO41	ENSG00000163013.12	ENST00000520530.3:ENST00000521871.5:ENST00000520186.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	101	2	5.63543	6.01754	6.39965	0.00241374	0.00131165	0.0309229	0.0171898
chr17	56892825	56892921	6931126	0	-	0.489583	(0.485,0.523]	chr17	706271	2	INTRON	INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000574234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	218	2	5.18111	6.017495	6.85388	0.00214661	7.82853e-5	0.0291055	0.00227715
chr6	36680473	36680569	2906394	0	+	0.635417	(0.58,1]	chr6	285238	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	CDKN1A	ENSG00000124762.14	ENST00000615513.4:ENST00000448526.6:ENST00000459970.1:ENST00000405375.5:ENST00000244741.10:ENST00000373711.3:ENST00000478800.1:ENST00000462537.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	100	2	5.47839	6.017405	6.55642	0.0145198	8.22236e-5	0.0823104	0.00236215
chr17	81230990	81231084	6983571	0	-	0.595745	(0.58,1]	chr17	713416	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TEPSIN	ENSG00000167302.11	ENST00000300714.7:ENST00000637944.2:ENST00000573295.5:ENST00000576090.5:ENST00000571115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	96	2	5.76934	6.01739	6.26544	0.00849371	2.06156e-4	0.0617717	0.00461335
chr20	61977117	61977211	7582890	0	-	0.776596	(0.58,1]	chr20	792277	4	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000474089.5:ENST00000692470.1:ENST00000252996.9:ENST00000436129.2:ENST00000608458.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	201	2	4.91344	6.017315	7.12119	5.01526e-4	1.00604e-4	0.0129939	0.00275314
chr19	10920066	10920155	7205598	0	+	0.539326	(0.523,0.58]	chr19	735191	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CARM1	ENSG00000142453.12	ENST00000327064.9:ENST00000590699.5:ENST00000344150.8:ENST00000586221.5:ENST00000586508.1:ENST00000586298.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	99	2	5.88072	6.017195	6.15367	0.0126258	5.76607e-4	0.0761905	0.00963379
chr12	132531773	132531872	5352933	0	+	0.525253	(0.523,0.58]	chr12	523670	34	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.96674	6.017105	6.06747	0.0109075	7.30845e-4	0.0707085	0.0113963
chr2	148407272	148407372	917239	0	+	0.39	(0.36,0.39]	chr2	102591	140	INTRON	INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000638043.2:ENST00000478804.3:ENST00000627651.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	109	2	5.53855	6.016909999999999	6.49527	0.00611969	0.00432809	0.0517362	0.0389438
chr1	35886931	35887030	89527	0	+	0.464646	(0.45,0.485]	chr1	10417	31	INTRON	INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5:ENST00000373204.6:ENST00000674426.1:ENST00000674304.1	protein_coding	protein_coding	protein_coding	protein_coding	0	100	2	6.01306	6.016875000000001	6.02069	0.0113949	0.00101549	0.0723462	0.0143256
chr3	196470642	196470740	1988025	0	-	0.479592	(0.45,0.485]	chr3	202391	20	UTR3	UTR3:EXON_MRNA	RNF168	ENSG00000163961.4	ENST00000318037.3	protein_coding	protein_coding	protein_coding	protein_coding	0	100	2	6.01306	6.016875000000001	6.02069	0.0113949	0.00101549	0.0723462	0.0143256
chr22	19423718	19423817	7763493	0	-	0.373737	(0.36,0.39]	chr22	813787	126	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	102	2	5.73711	6.016640000000001	6.29617	0.0210765	6.68957e-4	0.0996078	0.0107572
chr9	41999503	41999603	4310973	0	-	0.44	(0.419,0.45]	chr9	412200	5	INTRON	INTRON	CNTNAP3B	ENSG00000154529.15	ENST00000612828.4:ENST00000377561.7:ENST00000619138.4:ENST00000618777.4:ENST00000479351.5:ENST00000617422.4:ENST00000341990.8:ENST00000276974.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	106	2	5.68676	6.016545	6.34633	0.00923958	0.00338051	0.0644666	0.0328791
chr17	14027175	14027275	6858912	0	-	0.42	(0.419,0.45]	chr17	694957	1281	INTRON	INTRON	COX10-DT	ENSG00000236088.11	ENST00000582752.7:ENST00000690301.1:ENST00000662986.1:ENST00000686809.1:ENST00000686296.1:ENST00000602539.2:ENST00000602743.1	lncRNA	lncRNA	lncRNA	lncRNA	0	104	2	5.62805	6.016500000000001	6.40495	0.0280406	5.72149e-4	0.113651	0.00960229
chr2	32762294	32762393	751842	0	+	0.464646	(0.45,0.485]	chr2	87688	34	INTRON	INTRON	TTC27	ENSG00000018699.13	ENST00000317907.9:ENST00000647819.1:ENST00000433416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	220	2	4.95226	6.01647	7.08068	0.00166658	1.80421e-4	0.0252632	0.00419972
chr1	226944679	226944779	355639	0	+	0.51	(0.485,0.523]	chr1	40145	37	INTRON	INTRON	COQ8A	ENSG00000163050.18	ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000489044.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	100	2	5.90769	6.01645	6.12521	0.00823189	0.0011708	0.0608959	0.0157899
chr14	104721167	104721265	5925638	0	+	0.591837	(0.58,1]	chr14	579884	25	UTR3	UTR3:EXON_MRNA	INF2	ENSG00000203485.14	ENST00000330634.11:ENST00000392634.9:ENST00000675207.1:ENST00000675638.1	protein_coding	protein_coding	protein_coding	protein_coding	0	100	2	5.67642	6.01644	6.35646	0.00264106	0.00117039	0.0325876	0.0157899
chr5	37032492	37032592	2402350	0	+	0.5	(0.485,0.523]	chr5	240003	47	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.93906	6.016125	6.09319	0.0113657	7.11715e-4	0.0723462	0.0112082
chr3	49780177	49780276	1773981	0	-	0.373737	(0.36,0.39]	chr3	183906	314	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	101	2	5.91828	6.0157050000000005	6.11313	0.0158902	0.00107374	0.0859576	0.0148869
chr15	34408334	34408434	6217541	0	-	0.52	(0.485,0.523]	chr15	612287	2	INTRON	INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000569781.1:ENST00000565885.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	99	2	5.96717	6.015525	6.06388	0.0108319	7.70737e-4	0.0707085	0.0118331
chr17	58369128	58369226	6932560	0	-	0.408163	(0.39,0.419]	chr17	706609	52	INTRON	INTRON	RNF43	ENSG00000108375.13	ENST00000577716.5:ENST00000407977.7:ENST00000584437.5:ENST00000583753.5:ENST00000577625.5:ENST00000581868.1	protein_coding	protein_coding	protein_coding	protein_coding	0	102	2	5.90288	6.015314999999999	6.12775	0.0115883	0.00183094	0.0731017	0.0216571
chr20	64271183	64271282	7511224	0	+	0.464646	(0.45,0.485]	chr20	783907	28	INTRON	INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609818.1	protein_coding	protein_coding	protein_coding	protein_coding	0	148	2	4.74641	6.01478	7.28315	0.0193126	0.00112952	0.0994526	0.0202727
chr9	128987088	128987183	4249127	0	+	0.347368	(0.33,0.36]	chr9	404310	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP188	ENSG00000095319.14	ENST00000372577.2:ENST00000477069.5:ENST00000491502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	101	2	5.74693	6.01448	6.28203	0.0181681	6.00348e-4	0.0921579	0.00994732
chr1	85464442	85464542	520006	0	-	0.51	(0.485,0.523]	chr1	61356	3	SS5_PROX	SS5_PROX:INTRON	DDAH1	ENSG00000153904.21	ENST00000426972.8:ENST00000284031.13	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.99474	6.01435	6.03396	0.0103305	8.35707e-4	0.0684871	0.012554
chr19	37927550	37927650	7254472	0	+	0.41	(0.39,0.419]	chr19	743659	197	INTRON	INTRON	SIPA1L3	ENSG00000105738.11	ENST00000222345.11	protein_coding	protein_coding	protein_coding	protein_coding	1	227	2	4.91107	6.0142299999999995	7.11739	0.00208713	2.62154e-4	0.0287557	0.00552802
chr1	6030922	6031021	6745	0	+	0.525253	(0.523,0.58]	chr1	1420	31	INTRON	INTRON	KCNAB2	ENSG00000069424.16	ENST00000655548.1:ENST00000378111.6:ENST00000378097.6:ENST00000666163.1:ENST00000671676.1:ENST00000658883.1:ENST00000658691.1:ENST00000435937.6:ENST00000445501.6:ENST00000478098.5:ENST00000653262.1:ENST00000668706.1:ENST00000389632.9:ENST00000654144.1:ENST00000341524.6:ENST00000462676.3:ENST00000428161.6:ENST00000352527.6:ENST00000663169.1:ENST00000653635.1:ENST00000661248.1:ENST00000656198.1:ENST00000602612.5:ENST00000481789.2:ENST00000656746.1:ENST00000665338.1:ENST00000666299.1:ENST00000652845.1:ENST00000655703.1:ENST00000669250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	100	2	5.69157	6.014175	6.33678	0.0172851	3.44853e-4	0.0897247	0.00672121
chr2	163728402	163728502	1296246	0	-	0.38	(0.36,0.39]	chr2	139073	1162	INTRON	INTRON	FIGN	ENSG00000182263.14	ENST00000409634.5:ENST00000333129.4:ENST00000482917.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	101	2	5.86038	6.0141100000000005	6.16784	0.0174081	9.334e-4	0.0901374	0.0135546
chr1	172600866	172600966	276266	0	+	0.45	(0.419,0.45]	chr1	32365	3	INTRON	INTRON	SUCO	ENSG00000094975.14	ENST00000367723.8:ENST00000608151.5:ENST00000616058.4:ENST00000263688.4:ENST00000610051.5	protein_coding	protein_coding	protein_coding	protein_coding	0	102	2	5.79088	6.01402	6.23716	0.022052	8.82327e-4	0.101502	0.0129974
chr15	56984358	56984458	6111000	0	+	0.42	(0.419,0.45]	chr15	601587	629	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	102	2	5.79088	6.01402	6.23716	0.022052	8.82327e-4	0.101502	0.0129974
chr11	245639	245734	4783787	0	+	0.463158	(0.45,0.485]	chr11	457659	5	INTRON	INTRON	PSMD13	ENSG00000185627.19	ENST00000529372.5:ENST00000532097.6:ENST00000431206.6:ENST00000534590.5:ENST00000528906.5:ENST00000525665.5:ENST00000527047.5:ENST00000352303.9:ENST00000382671.8:ENST00000526783.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	102	2	5.79191	6.013999999999999	6.23609	0.00778782	0.00183113	0.0590114	0.0216571
chr14	70027143	70027243	5872654	0	+	0.53	(0.523,0.58]	chr14	573363	33	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	0	111	2	5.40225	6.013925	6.6256	0.00404292	0.00333843	0.0371291	0.0368376
chr14	104890547	104890643	5926131	0	+	0.572917	(0.523,0.58]	chr14	579999	4	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	100	2	5.8779	6.013705	6.14951	0.00793972	0.00121652	0.0596361	0.0162693
chr18	77018677	77018777	7180501	0	-	0.5	(0.485,0.523]	chr18	730157	10	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000580402.5:ENST00000580473.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000495162.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	117	2	5.25048	6.013525	6.77657	0.0059614	0.00248912	0.0479866	0.0315244
chr15	73689172	73689272	6150523	0	+	0.51	(0.485,0.523]	chr15	604912	37	INTRON	INTRON	CD276	ENSG00000103855.18	ENST00000567189.5:ENST00000537340.6:ENST00000318424.9:ENST00000318443.10:ENST00000560786.6:ENST00000558689.5:ENST00000561213.5:ENST00000560928.5:ENST00000563584.5:ENST00000561416.5:ENST00000560995.5:ENST00000567582.5:ENST00000561260.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	101	2	5.80515	6.013425	6.2217	0.00693912	0.00153111	0.0553898	0.0191213
chr16	81566176	81566276	6508955	0	+	0.49	(0.485,0.523]	chr16	645911	703	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	101	2	5.80515	6.013425	6.2217	0.00693912	0.00153111	0.0553898	0.0191213
chr16	72931397	72931497	6626718	0	-	0.46	(0.45,0.485]	chr16	663529	411	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2:ENST00000397992.5:ENST00000268489.10	protein_coding	protein_coding	protein_coding	protein_coding	2	295	2	4.45284	6.01342	7.574	6.39309e-4	2.03854e-4	0.0148613	0.00459365
chr1	28760247	28760347	75904	0	+	0.49	(0.485,0.523]	chr1	8722	159	INTRON	INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	263	2	4.72689	6.01308	7.29927	0.00232182	2.02879e-5	0.030354	8.47843e-4
chr6	120646889	120646989	2994577	0	+	0.53	(0.523,0.58]	chr6	293187	1839	INTRON	INTRON	ENSG00000286540	ENSG00000286540.1	ENST00000657887.1	lncRNA	lncRNA	lncRNA	lncRNA	0	102	2	5.73609	6.01286	6.28963	0.00618741	0.0017613	0.0519442	0.0211077
chr16	52444453	52444551	6588827	0	-	0.397959	(0.39,0.419]	chr16	658670	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000566696.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	103	2	5.80276	6.012695	6.22263	0.00991891	0.00233691	0.0671959	0.0257208
chr3	65636685	65636785	1811838	0	-	0.35	(0.33,0.36]	chr3	187278	142	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	102	2	5.81391	6.01232	6.21073	0.00843224	0.00200357	0.0617623	0.0230381
chr10	132713250	132713350	4618600	0	+	0.55	(0.523,0.58]	chr10	441181	24	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000487614.1:ENST00000498337.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	99	2	5.78924	6.01212	6.235	0.0147166	4.59688e-4	0.0826843	0.00821903
chr8	23140356	23140456	3955059	0	-	0.43	(0.419,0.45]	chr8	377528	17	INTRON	INTRON	TNFRSF10D	ENSG00000173530.6	ENST00000312584.4	protein_coding	protein_coding	protein_coding	protein_coding	2	315	2	4.21444	6.012074999999999	7.80971	7.07662e-4	5.58653e-4	0.0156815	0.00944382
chr10	44968764	44968864	4483216	0	+	0.56	(0.523,0.58]	chr10	428600	85	INTRON	INTRON	RASSF4	ENSG00000107551.21	ENST00000489171.5:ENST00000340258.10:ENST00000427758.5:ENST00000483709.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	99	2	5.9758	6.01186	6.04792	0.00948306	9.36996e-4	0.0656057	0.0135546
chr1	29238214	29238314	78390	0	+	0.61	(0.58,1]	chr1	8914	11	INTRON	INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2	protein_coding	protein_coding	protein_coding	protein_coding	1	207	2	5.46244	6.0115	6.56056	0.00171861	1.56498e-5	0.025659	7.06537e-4
chr17	15467059	15467159	6860105	0	-	0.49	(0.485,0.523]	chr17	695068	2	SS5_PROX	SS5_PROX:INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	99	2	5.78967	6.010535	6.2314	0.0146211	4.86354e-4	0.0826064	0.00857996
chr17	77375823	77375920	6804121	0	+	0.628866	(0.58,1]	chr17	686752	11	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1:ENST00000423034.6:ENST00000590059.5:ENST00000587514.1:ENST00000590586.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	98	2	5.75506	6.01052	6.26598	0.00318361	9.38062e-4	0.0360488	0.0135546
chr7	76998020	76998119	3398780	0	+	0.59596	(0.58,1]	chr7	328286	73	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	98	2	5.75506	6.01052	6.26598	0.00318361	9.38062e-4	0.0360488	0.0135546
chr21	43727051	43727149	7623864	0	+	0.612245	(0.58,1]	chr21	796696	33	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000438837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	265	2	4.6511	6.01031	7.36952	2.84773e-4	5.18929e-5	0.00957277	0.00169096
chr6	154451457	154451557	3296957	0	-	0.59	(0.58,1]	chr6	319119	8	INTRON	INTRON	CNKSR3	ENSG00000153721.19	ENST00000607772.6:ENST00000479339.5	protein_coding	protein_coding	protein_coding	protein_coding	0	96	2	5.70191	6.0100549999999995	6.3182	0.00964351	1.74994e-4	0.0659937	0.00410754
chr1	31414331	31414420	80067	0	+	0.629214	(0.58,1]	chr1	9151	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SERINC2	ENSG00000168528.12	ENST00000373710.5:ENST00000536859.5:ENST00000487207.5:ENST00000373709.8:ENST00000536384.2:ENST00000491976.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	907	2	5.96814	6.009855	6.05157	5.06433e-4	1.1012e-5	0.00881473	0.00195192
chr2	112523263	112523361	877885	0	+	0.459184	(0.45,0.485]	chr2	99159	3	INTRON	INTRON	TTL	ENSG00000114999.8	ENST00000233336.7:ENST00000460450.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	219	2	5.00438	6.009835000000001	7.01529	0.00188703	1.54619e-4	0.0271069	0.00376396
chr1	214013112	214013212	339610	0	+	0.39	(0.36,0.39]	chr1	38109	10	INTRON	INTRON	PROX1	ENSG00000117707.16	ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2	protein_coding	protein_coding	protein_coding	protein_coding	1	226	2	4.96375	6.00971	7.05567	0.00226676	2.24487e-4	0.0300665	0.00491419
chr16	85451909	85452009	6517590	0	+	0.63	(0.58,1]	chr16	646391	926	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	105	2	5.45872	6.009639999999999	6.56056	0.00211999	0.00171861	0.025659	0.0239744
chr17	340752	340852	6821696	0	-	0.69	(0.58,1]	chr17	689626	2	SS5_PROX	SS5_PROX:INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000577079.5:ENST00000573780.5:ENST00000575130.5:ENST00000575634.5	protein_coding	protein_coding	protein_coding	protein_coding	0	105	2	5.45872	6.009639999999999	6.56056	0.00211999	0.00171861	0.025659	0.0239744
chr4	3415144	3415244	2005599	0	+	0.69	(0.58,1]	chr4	204697	3	SS5_PROX	SS5_PROX:INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000513784.7:ENST00000338806.4:ENST00000506998.5:ENST00000508158.5:ENST00000504194.5:ENST00000512266.5:ENST00000513991.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	96	2	5.90055	6.0096	6.11865	0.00429384	6.1741e-4	0.042386	0.0101143
chr12	7101009	7101106	5364675	0	-	0.402062	(0.39,0.419]	chr12	525793	6	INTRON	INTRON	C1RL	ENSG00000139178.12	ENST00000545280.5:ENST00000266542.9:ENST00000544702.5:ENST00000534950.1:ENST00000543933.5:ENST00000537833.6:ENST00000534969.2	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	0	101	2	5.7987	6.00934	6.21998	0.0195328	8.22163e-4	0.0955413	0.0124043
chr8	127849142	127849241	3918334	0	+	0.565657	(0.523,0.58]	chr8	374180	25	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000655594.1	lncRNA	lncRNA	lncRNA	lncRNA	0	100	2	5.65749	6.009315	6.36114	0.0182707	3.21725e-4	0.0921579	0.0063695
chr7	1008949	1009049	3526312	0	-	0.52	(0.485,0.523]	chr7	340566	80	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	215	2	4.96788	6.009245	7.05061	0.00146547	1.5023e-4	0.023492	0.0036849
chr7	66662581	66662680	3382030	0	+	0.525253	(0.523,0.58]	chr7	326325	76	INTRON	INTRON	ENSG00000226824	ENSG00000226824.8	ENST00000693151.1:ENST00000656515.2:ENST00000448096.1:ENST00000439360.5:ENST00000657342.1:ENST00000428557.1	lncRNA	lncRNA	lncRNA	lncRNA	1	260	2	4.59372	6.00859	7.42346	0.0030293299999999998	1.27928e-5	0.0350226	6.12982e-4
chr18	786402	786502	7103776	0	-	0.32	(0.29,0.33]	chr18	723519	109	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	101	2	5.59406	6.00844	6.42282	0.0184845	3.05448e-4	0.0928429	0.00616054
chr21	42847641	42847740	7675448	0	-	0.292929	(0.29,0.33]	chr21	802287	40	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	0	104	2	5.44135	6.0084	6.57545	0.0236557	1.9739e-4	0.105002	0.0044853
chr16	46681033	46681114	6581398	0	-	0.345679	(0.33,0.36]	chr16	658100	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VPS35	ENSG00000069329.18	ENST00000299138.12:ENST00000647959.1:ENST00000568784.6:ENST00000569950.1:ENST00000563884.1:ENST00000568612.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	105	2	5.62984	6.00805	6.38626	0.00621741	0.00313405	0.052147	0.0312116
chr17	43546114	43546214	6739026	0	+	0.68	(0.58,1]	chr17	678633	9	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	323	2	4.35069	6.008005000000001	7.66532	0.00111977	1.86786e-6	0.0202363	1.59168e-4
chr17	80710511	80710611	6810563	0	+	0.37	(0.36,0.39]	chr17	687833	10	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000572733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	102	2	5.67128	6.007875	6.34447	0.023302	5.89187e-4	0.103669	0.00981079
chr2	149614032	149614132	920086	0	+	0.32	(0.29,0.33]	chr2	102788	196	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	3	349	2	4.45303	6.007645	7.56226	4.45525e-4	9.18732e-5	0.0121498	0.00256521
chr8	122891323	122891423	3910759	0	+	0.3	(0.29,0.33]	chr8	373489	274	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6:ENST00000534247.1	protein_coding	protein_coding	protein_coding	protein_coding	0	104	2	5.61082	6.00748	6.40414	0.00444127	0.00264971	0.0433231	0.027979
chr10	103822335	103822435	4758328	0	-	0.5	(0.485,0.523]	chr10	454819	206	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.94031	6.00737	6.07443	0.00899749	0.00107389	0.0637469	0.0148869
chr2	113722327	113722419	1258902	0	-	0.380435	(0.36,0.39]	chr2	135582	6	INTRON	INTRON	SLC35F5	ENSG00000115084.15	ENST00000469702.5:ENST00000245680.7:ENST00000409106.5:ENST00000459683.5:ENST00000470204.2:ENST00000447673.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	386	2	4.40769	6.007365	7.60704	0.00246956	1.65363e-5	0.0313792	7.34904e-4
chr22	39420827	39420927	7725738	0	+	0.56	(0.523,0.58]	chr22	809455	8	INTRON	INTRON	TAB1	ENSG00000100324.14	ENST00000216160.11:ENST00000331454.3	protein_coding	protein_coding	protein_coding	protein_coding	0	103	2	5.65959	6.0072399999999995	6.35489	0.00549977	0.0021416	0.0489559	0.0240825
chr10	79292456	79292556	4534292	0	+	0.52	(0.485,0.523]	chr10	432485	1	SS5_PROX	SS5_PROX:INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10:ENST00000478357.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	100	2	5.84014	6.0072	6.17426	0.00754939	0.00139792	0.0578091	0.0179863
chr21	44858463	44858563	7678419	0	-	0.57	(0.523,0.58]	chr21	802754	17	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000397886.3:ENST00000474737.5:ENST00000494690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	116	2	5.25403	6.007099999999999	6.76017	0.00573579	0.00258949	0.0467736	0.0321874
chr13	78648286	78648386	5734878	0	-	0.44	(0.419,0.45]	chr13	562366	29	INTRON	INTRON	OBI1	ENSG00000152193.8	ENST00000282003.7	protein_coding	protein_coding	protein_coding	protein_coding	0	121	2	5.20508	6.00681	6.80854	0.00979452	0.00425752	0.0664239	0.0422596
chr14	91221730	91221827	5899574	0	+	0.226804	[0,0.29]	chr14	576435	11	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	98	2	5.6603	6.006645000000001	6.35299	0.0113106	2.65404e-4	0.0722887	0.00556524
chr3	49773887	49773987	1773918	0	-	0.48	(0.45,0.485]	chr3	183906	251	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	110	2	5.43172	6.006635	6.58155	0.00440365	0.00421879	0.0421633	0.0393688
chr4	183123316	183123415	2167634	0	+	0.353535	(0.33,0.36]	chr4	219488	233	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000508614.5:ENST00000448232.6:ENST00000513834.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	239	2	4.38776	6.0065100000000005	7.62526	0.00100301	6.10849e-4	0.0145061	0.0142502
chr18	75020264	75020364	7093486	0	+	0.36	(0.33,0.36]	chr18	722473	992	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10	protein_coding	protein_coding	protein_coding	protein_coding	0	102	2	5.77893	6.006399999999999	6.23387	0.00810355	0.00218403	0.0602166	0.0244273
chr17	81148791	81148891	6982990	0	-	0.62	(0.58,1]	chr17	713268	139	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	95	2	5.8019	6.00629	6.21068	0.007984	2.44053e-4	0.0596361	0.00522003
chr6	2469604	2469700	2826636	0	+	0.5625	(0.523,0.58]	chr6	277328	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	GMDS-DT	ENSG00000250903.10	ENST00000657072.1:ENST00000659523.1:ENST00000659643.1:ENST00000660978.1:ENST00000691547.1:ENST00000654526.1:ENST00000670895.1:ENST00000657589.1:ENST00000607519.2:ENST00000662000.1:ENST00000655727.1:ENST00000606884.1	lncRNA	lncRNA	lncRNA	lncRNA	0	127	2	5.02927	6.00611	6.98295	0.0095202	0.00168728	0.0650078	0.0254298
chr2	239281077	239281177	1391519	0	-	0.43	(0.419,0.45]	chr2	148740	295	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	300	2	3.91687	6.0060899999999995	8.09531	0.014186	4.6985e-6	0.0816012	3.01296e-4
chr11	107803748	107803842	5117889	0	-	0.287234	[0,0.29]	chr11	497005	2	INTRON	INTRON	SLC35F2	ENSG00000110660.15	ENST00000525071.5:ENST00000525815.6:ENST00000533664.1:ENST00000375682.8:ENST00000532513.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	107	2	5.25474	6.006085000000001	6.75743	0.02298	7.85004e-5	0.102982	0.00228252
chr22	42089335	42089433	7818353	0	-	0.510204	(0.485,0.523]	chr22	820093	18	INTRON	INTRON	NDUFA6	ENSG00000184983.11	ENST00000498737.8:ENST00000617763.1	protein_coding	protein_coding	protein_coding	protein_coding	1	279	2	5.0834	6.005955	6.92851	0.00113951	6.37267e-5	0.0203945	0.00195661
chr10	75498992	75499092	4521148	0	+	0.61	(0.58,1]	chr10	432249	474	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	267	2	4.85222	6.0058050000000005	7.15939	4.60046e-4	2.5972e-5	0.0123493	0.00101533
chr11	70739186	70739286	5061673	0	-	0.63	(0.58,1]	chr11	492701	213	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	97	2	5.79283	6.005675	6.21852	0.00350812	8.4246e-4	0.0379357	0.0125912
chr19	323735	323835	7303113	0	-	0.44	(0.419,0.45]	chr19	752407	97	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	110	2	5.48746	6.00552	6.52358	0.00689831	0.00532156	0.0553728	0.0446153
chr2	237712576	237712674	1070694	0	+	0.591837	(0.58,1]	chr2	115988	36	INTRON	INTRON	LRRFIP1	ENSG00000124831.19	ENST00000308482.14:ENST00000465870.5:ENST00000498053.5:ENST00000289175.10:ENST00000244815.9:ENST00000420665.5:ENST00000392000.4:ENST00000473815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	99	2	5.67642	6.005395	6.33437	0.00276493	0.00117039	0.0332418	0.0157899
chr2	99381465	99381561	858033	0	+	0.354167	(0.33,0.36]	chr2	97201	17	INTRON	INTRON	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11	protein_coding	protein_coding	protein_coding	protein_coding	1	268	2	4.63963	6.0048	7.36997	0.00318054	2.70516e-5	0.0360488	0.00104594
chr14	94309335	94309435	6046266	0	-	0.43	(0.419,0.45]	chr14	593050	2	SS5_PROX	SS5_PROX:INTRON	SERPINA6	ENSG00000170099.6	ENST00000341584.4:ENST00000555056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	103	2	5.79433	6.004555	6.21478	0.011428	0.00262626	0.0723462	0.0278348
chr22	32818497	32818597	7717794	0	+	0.43	(0.419,0.45]	chr22	807776	160	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	0	103	2	5.79433	6.004555	6.21478	0.011428	0.00262626	0.0723462	0.0278348
chr20	20563779	20563879	7534852	0	-	0.36	(0.33,0.36]	chr20	786348	166	INTRON	INTRON	RALGAPA2	ENSG00000188559.16	ENST00000202677.12:ENST00000430436.5	protein_coding	protein_coding	protein_coding	protein_coding	1	241	2	4.34915	6.0045	7.65985	0.00111275	5.70626e-4	0.0152496	0.0139715
chr5	140647927	140648007	2552836	0	+	0.5375	(0.523,0.58]	chr5	253514	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IK	ENSG00000113141.19	ENST00000513256.5:ENST00000417647.7:ENST00000503332.5:ENST00000508301.5:ENST00000507593.5:ENST00000523672.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	293	2	4.24728	6.00441	7.76154	3.54552e-4	3.21002e-4	0.0107472	0.0063695
chr9	14612868	14612968	4278228	0	-	0.37	(0.36,0.39]	chr9	408733	19	UTR3	UTR3:EXON_MRNA	ZDHHC21	ENSG00000175893.12	ENST00000380916.9	protein_coding	protein_coding	protein_coding	protein_coding	0	101	2	5.73711	6.004255000000001	6.2714	0.0210765	7.13729e-4	0.0996078	0.0112151
chr15	89314008	89314108	6346730	0	-	0.38	(0.36,0.39]	chr15	625714	84	INTRON	INTRON	POLG	ENSG00000140521.17	ENST00000635831.1	protein_coding	protein_coding	protein_coding	protein_coding	0	101	2	5.90345	6.003915	6.10438	0.0117824	0.00181603	0.073726	0.0215865
chr22	46929631	46929730	7746691	0	+	0.464646	(0.45,0.485]	chr22	812232	158	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	103	2	5.68155	6.00334	6.32513	0.00666704	0.00241241	0.0540577	0.0261086
chr4	3100187	3100285	2002831	0	+	0.397959	(0.39,0.419]	chr4	204282	4	INTRON	INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000680291.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	101	2	5.73575	6.00329	6.27083	0.0215144	7.20415e-4	0.100612	0.0112959
chr13	113005577	113005677	5655679	0	+	0.56	(0.523,0.58]	chr13	555138	32	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	100	2	5.80873	6.003235	6.19774	0.0072907	0.00145893	0.0567247	0.0184991
chr17	51166084	51166165	6753900	0	+	0.555556	(0.523,0.58]	chr17	681335	2	SS5_PROX	SS5_PROX:INTRON	NME1-NME2:NME2	ENSG00000011052.21:ENSG00000243678.12	ENST00000393193.6:ENST00000376392.10:ENST00000555572.1:ENST00000514264.6:ENST00000513177.5	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.88072	6.0031099999999995	6.1255	0.0126258	6.23263e-4	0.0761905	0.0101764
chr2	15338638	15338737	1091711	0	-	0.444444	(0.419,0.45]	chr2	118940	75	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	0	104	2	5.72351	6.00278	6.28205	0.0102557	0.00310292	0.0684871	0.0311614
chr1	91745125	91745225	526400	0	-	0.47	(0.45,0.485]	chr1	61884	98	INTRON	INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000468996.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	108	2	5.29973	6.002625	6.70552	0.035042	1.52809e-4	0.12704	0.00372909
chr17	72561216	72561315	6963923	0	-	0.474747	(0.45,0.485]	chr17	710389	268	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	108	2	5.29973	6.002625	6.70552	0.035042	1.52809e-4	0.12704	0.00372909
chr16	56384618	56384718	6593814	0	-	0.39	(0.36,0.39]	chr16	659150	149	INTRON	INTRON	AMFR	ENSG00000159461.15	ENST00000290649.10:ENST00000492830.5:ENST00000567738.1:ENST00000566334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	102	2	5.6372	6.00261	6.36802	0.024533	5.53634e-4	0.106796	0.00941672
chrX	43843369	43843469	8035421	0	-	0.46	(0.45,0.485]	chrX	838166	3	SS5_PROX	SS5_PROX:INTRON	MAOB	ENSG00000069535.14	ENST00000378069.5:ENST00000487544.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	101	2	5.79191	6.00243	6.21295	0.00810629	0.00183113	0.0602166	0.0216571
chr2	3287317	3287416	1080980	0	-	0.525253	(0.523,0.58]	chr2	117633	46	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	101	2	5.55012	6.00239	6.45466	0.0217068	2.45921e-4	0.100615	0.00524396
chr20	61970887	61970987	7582823	0	-	0.56	(0.523,0.58]	chr20	792262	167	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000474089.5	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.96674	6.00215	6.03756	0.0109075	7.92905e-4	0.0707085	0.0120621
chr11	66350996	66351096	4875767	0	+	0.37	(0.36,0.39]	chr11	469240	4	SS3_PROX	SS3_PROX:INTRON	ENSG00000255468	ENSG00000255468.7	ENST00000531602.1:ENST00000581155.5:ENST00000580881.1	lncRNA	lncRNA	lncRNA	lncRNA	0	102	2	5.80333	6.00209	6.20085	0.0100561	0.00231859	0.0677306	0.0255753
chr4	158245148	158245248	2156032	0	+	0.35	(0.33,0.36]	chr4	218463	4	INTRON	INTRON	TMEM144	ENSG00000164124.11	ENST00000296529.11:ENST00000511532.5:ENST00000503404.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	100	2	5.91404	6.001564999999999	6.08909	0.0103694	0.00156051	0.0686683	0.0194067
chr18	36017290	36017390	7145096	0	-	0.43	(0.419,0.45]	chr18	726770	236	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5	protein_coding	protein_coding	protein_coding	protein_coding	1	288	2	4.8408	6.00146	7.16212	0.00287888	7.24277e-5	0.0341432	0.00215979
chr20	44401638	44401738	7482928	0	+	0.58	(0.523,0.58]	chr20	779631	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000682427.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	213	2	4.97915	6.001405	7.02366	0.00155872	1.39966e-4	0.0243306	0.00350012
chr20	62125280	62125369	7505667	0	+	0.561798	(0.523,0.58]	chr20	782463	1	INTRON	INTRON	LSM14B	ENSG00000149657.20	ENST00000370915.5:ENST00000279068.11:ENST00000400318.6:ENST00000279069.11:ENST00000361670.3	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.8779	6.001340000000001	6.12478	0.00829271	0.00121652	0.0610772	0.0162693
chr7	74365111	74365210	3390940	0	+	0.535354	(0.523,0.58]	chr7	327282	4	INTRON	INTRON	CLIP2	ENSG00000106665.16	ENST00000223398.11:ENST00000361545.9	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.8779	6.001340000000001	6.12478	0.00829271	0.00121652	0.0610772	0.0162693
chr4	869663	869761	2178289	0	-	0.469388	(0.45,0.485]	chr4	220580	11	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	100	2	5.86106	6.001125	6.14119	0.00917101	0.00153611	0.064285	0.0191553
chr20	36315202	36315302	7469139	0	+	0.48	(0.45,0.485]	chr20	777805	83	INTRON	INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10	protein_coding	protein_coding	protein_coding	protein_coding	0	102	2	5.54186	6.001025	6.46019	0.0243502	3.07362e-4	0.106588	0.00618726
chr8	128040083	128040183	3920282	0	+	0.5	(0.485,0.523]	chr8	374320	2	SS5_PROX	SS5_PROX:INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	0	101	2	5.55054	6.000795	6.45105	0.0215787	2.61322e-4	0.100612	0.00551565
chr20	36313604	36313704	7469123	0	+	0.65	(0.58,1]	chr20	777805	67	INTRON	INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10	protein_coding	protein_coding	protein_coding	protein_coding	0	95	2	5.73602	6.00073	6.26544	0.00904546	2.06156e-4	0.0637469	0.00461335
chr3	33087523	33087623	1733030	0	-	0.58	(0.523,0.58]	chr3	179306	99	INTRON	INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	98	2	5.99431	6.00066	6.00701	0.0104033	8.61362e-4	0.0686837	0.0127848
chr10	31927982	31928082	4661827	0	-	0.61	(0.58,1]	chr10	444985	171	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9	protein_coding	protein_coding	protein_coding	protein_coding	0	96	2	5.63118	6.00014	6.3691	0.0109983	1.49225e-4	0.0708586	0.00367368
chr21	44867036	44867134	7678512	0	-	0.530612	(0.523,0.58]	chr21	802773	10	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	2520	2	5.93037	5.99998	6.06959	2.32662e-5	8.90875e-7	0.00277911	9.74081e-5
chr10	50382602	50382702	4688270	0	-	0.41	(0.39,0.419]	chr10	447049	379	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	103	2	5.73194	5.999885	6.26783	0.00920367	0.00276973	0.0644228	0.0286873
chr1	50724274	50724374	477374	0	-	0.52	(0.485,0.523]	chr1	56804	180	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	99	2	5.87431	5.99976	6.12521	0.00823189	0.00127835	0.0608959	0.0168904
chr6	158256283	158256383	3061078	0	+	0.34	(0.33,0.36]	chr6	297572	236	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	105	2	5.42367	5.999325000000001	6.57498	0.0299185	2.7029e-4	0.116945	0.00563203
chr22	33831743	33831843	7801983	0	-	0.48	(0.45,0.485]	chr22	817639	698	INTRON	INTRON	LARGE1	ENSG00000133424.22	ENST00000397394.8:ENST00000413114.6:ENST00000676070.1:ENST00000674543.1:ENST00000676370.1:ENST00000354992.7:ENST00000402320.6:ENST00000675416.1:ENST00000676132.1:ENST00000674789.1:ENST00000675277.1:ENST00000434071.6:ENST00000432776.6:ENST00000423375.2:ENST00000430220.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	99	2	5.95894	5.999275	6.03961	0.0108974	0.00119342	0.0707085	0.016037
chr4	40975732	40975832	2223014	0	-	0.38	(0.36,0.39]	chr4	224407	303	INTRON	INTRON	APBB2	ENSG00000163697.17	ENST00000295974.12:ENST00000508593.6:ENST00000513140.5:ENST00000513611.5:ENST00000506352.5:ENST00000509475.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	100	2	5.83054	5.9991900000000005	6.16784	0.0182399	9.334e-4	0.0921579	0.0135546
chr7	64544432	64544532	3593372	0	-	0.37	(0.36,0.39]	chr7	346592	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZNF680	ENSG00000173041.12	ENST00000309683.11:ENST00000476563.1:ENST00000447137.2:ENST00000473601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	100	2	5.99707	5.999029999999999	6.00099	0.0139273	0.00143949	0.0805916	0.0183435
chr20	25350883	25350983	7539058	0	-	0.43	(0.419,0.45]	chr20	786928	84	INTRON	INTRON	ABHD12	ENSG00000100997.20	ENST00000376542.8:ENST00000339157.10:ENST00000672406.1:ENST00000672566.1:ENST00000673121.1:ENST00000471287.5:ENST00000461204.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	102	2	5.66212	5.99877	6.33542	0.0266819	6.85495e-4	0.111563	0.0108846
chr16	85587032	85587132	6518943	0	+	0.6	(0.58,1]	chr16	646396	303	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	97	2	5.75506	5.998755	6.24245	0.00334087	9.38062e-4	0.0368376	0.0135546
chr22	50730107	50730207	7755493	0	+	0.62	(0.58,1]	chr22	812811	4	SS5_PROX	SS5_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2:ENST00000659388.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	97	2	5.75506	5.998755	6.24245	0.00334087	9.38062e-4	0.0368376	0.0135546
chr9	137570028	137570127	4435764	0	-	0.565657	(0.523,0.58]	chr9	424466	45	INTRON	INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000475100.5:ENST00000472113.5:ENST00000485189.5:ENST00000467768.5:ENST00000477690.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	98	2	5.9758	5.998585	6.02137	0.00992924	9.36996e-4	0.0671959	0.0135546
chrX	9569440	9569540	7843494	0	+	0.47	(0.45,0.485]	chrX	822423	85	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	221	2	5.22908	5.99843	6.76778	0.0029996	7.8777e-5	0.0348875	0.0022885
chr16	81544381	81544481	6508737	0	+	0.43	(0.419,0.45]	chr16	645911	485	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	306	2	4.42581	5.998185	7.57056	0.00109906	3.10774e-4	0.0199966	0.00624322
chr2	231989348	231989448	1051342	0	+	0.33	(0.29,0.33]	chr2	114515	272	INTRON	INTRON	DIS3L2	ENSG00000144535.20	ENST00000273009.10:ENST00000390005.9:ENST00000409401.7:ENST00000445090.5:ENST00000441279.5:ENST00000325385.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	103	2	5.44135	5.99798	6.55461	0.0236557	2.0962e-4	0.105002	0.00467341
chr17	80562074	80562174	6809073	0	+	0.64	(0.58,1]	chr17	687806	159	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	199	2	5.2395	5.997775	6.75605	0.00112759	3.37223e-5	0.0202727	0.0012296
chr13	113588943	113589042	5658889	0	+	0.535354	(0.523,0.58]	chr13	555775	27	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	214	2	5.15698	5.99765	6.83832	0.00223061	8.10397e-5	0.0297064	0.00233934
chrX	44898785	44898885	7871929	0	+	0.57	(0.523,0.58]	chrX	825082	244	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	342	2	4.2256	5.99757	7.76954	3.48766e-4	1.68824e-4	0.0106878	0.0040111
chr5	59213979	59214079	2666264	0	-	0.47	(0.45,0.485]	chr5	264317	201	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000503258.5:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7:ENST00000502575.1:ENST00000621323.4:ENST00000515324.1:ENST00000638939.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	109	2	5.43172	5.997540000000001	6.56336	0.00440365	0.00436001	0.0427656	0.0393688
chr5	176953469	176953568	2816761	0	-	0.373737	(0.36,0.39]	chr5	275850	15	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000510698.2:ENST00000503273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	100	2	5.80006	5.9972449999999995	6.19443	0.0191255	8.7159e-4	0.0952349	0.0128912
chr9	120945015	120945115	4388162	0	-	0.52	(0.485,0.523]	chr9	418731	107	INTRON	INTRON	C5	ENSG00000106804.9	ENST00000696278.1:ENST00000696281.1:ENST00000696280.1:ENST00000696279.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	117	2	5.01719	5.996835	6.97648	0.0480495	5.50755e-5	0.144601	0.00176017
chr19	16131049	16131143	7216449	0	+	0.553191	(0.523,0.58]	chr19	737377	11	INTRON	INTRON	RAB8A	ENSG00000167461.12	ENST00000300935.8:ENST00000586682.1:ENST00000592971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	102	2	5.65959	5.996525	6.33346	0.00571732	0.0021416	0.0498083	0.0240825
chr6	602018	602118	3078180	0	-	0.52	(0.485,0.523]	chr6	299385	24	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	0	100	2	5.58723	5.9961400000000005	6.40505	0.0203514	2.98099e-4	0.0979211	0.00604717
chr16	85388436	85388536	6516955	0	+	0.53	(0.523,0.58]	chr16	646391	291	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	5.40225	5.996075	6.5899	0.00404292	0.00356891	0.0383188	0.0371291
chr21	34874162	34874262	7655689	0	-	0.4	(0.39,0.419]	chr21	801043	142	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	100	2	5.96596	5.99607	6.02618	0.0136549	0.00156652	0.0798074	0.0194594
chr18	12607495	12607595	7122367	0	-	0.38	(0.36,0.39]	chr18	724805	187	INTRON	INTRON	SPIRE1	ENSG00000134278.16	ENST00000409402.9:ENST00000410092.7:ENST00000309836.9:ENST00000440472.6:ENST00000453447.6:ENST00000449797.5:ENST00000497844.6:ENST00000462226.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	116	2	5.1004	5.995875	6.89135	0.0526991	1.32362e-4	0.14912	0.00337119
chr21	25952210	25952309	7645953	0	-	0.353535	(0.33,0.36]	chr21	799522	59	INTRON	INTRON	APP	ENSG00000142192.21	ENST00000357903.7:ENST00000346798.8:ENST00000348990.9:ENST00000354192.7:ENST00000359726.7:ENST00000440126.7:ENST00000439274.6:ENST00000358918.7:ENST00000448850.5	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.9838	5.995735	6.00767	0.0123642	0.00123038	0.0758857	0.0164259
chr4	8229556	8229656	2014330	0	+	0.63	(0.58,1]	chr4	205591	3	SS5_PROX	SS5_PROX:INTRON	SH3TC1	ENSG00000125089.18	ENST00000508641.2:ENST00000245105.8:ENST00000506360.5:ENST00000502669.5:ENST00000515682.5:ENST00000457650.7:ENST00000684698.1:ENST00000684537.1:ENST00000682056.1:ENST00000682862.1:ENST00000502350.5:ENST00000511002.6:ENST00000508183.5:ENST00000513495.5:ENST00000507801.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	105	2	5.41094	5.995205	6.57947	0.00240622	0.00165065	0.0261006	0.0250898
chr20	46724740	46724840	7488453	0	+	0.48	(0.45,0.485]	chr20	780624	3	SS3_PROX	SS3_PROX:INTRON	SLC2A10	ENSG00000197496.6	ENST00000359271.4:ENST00000611837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	112	2	5.33781	5.9949449999999995	6.65208	0.0054758	0.00371059	0.0454065	0.039096
chr11	115355706	115355806	5129645	0	-	0.4	(0.39,0.419]	chr11	498112	224	INTRON	INTRON	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000541434.5:ENST00000543249.1:ENST00000540951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	101	2	5.66992	5.994935	6.31995	0.0237738	6.3352e-4	0.105296	0.0102998
chr6	1680725	1680825	3079677	0	-	0.5	(0.485,0.523]	chr6	299464	4	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000533279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	106	2	5.30837	5.9945699999999995	6.68077	0.0314138	1.33825e-4	0.12069	0.00338739
chr4	1324886	1324984	1995287	0	+	0.540816	(0.523,0.58]	chr4	203264	9	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	559	2	5.48521	5.9937000000000005	6.50219	5.04199e-4	1.01863e-6	0.0130285	1.0586e-4
chr20	37394677	37394777	7473049	0	+	0.63	(0.58,1]	chr20	778187	4	SS5_PROX	SS5_PROX:INTRON	SRC	ENSG00000197122.13	ENST00000692112.1:ENST00000692423.1:ENST00000373578.7:ENST00000373567.6:ENST00000373558.2:ENST00000358208.9:ENST00000489153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	94	2	5.95454	5.993625	6.03271	0.0059453	4.18183e-4	0.0506158	0.00770005
chr14	71671847	71671933	5878886	0	+	0.418605	(0.39,0.419]	chr14	573785	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SIPA1L1	ENSG00000197555.10	ENST00000381232.8:ENST00000555818.5:ENST00000358550.6:ENST00000537413.5	protein_coding	protein_coding	protein_coding	protein_coding	0	100	2	5.93476	5.993505	6.05225	0.0130948	0.00169249	0.0782739	0.0204799
chr19	19430880	19430979	7226991	0	+	0.454545	(0.45,0.485]	chr19	739816	25	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6:ENST00000432704.5:ENST00000404158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	224	2	4.57535	5.993015	7.41068	8.81297e-4	5.36627e-4	0.0176886	0.0091711
chr17	55313129	55313229	6757595	0	+	0.41	(0.39,0.419]	chr17	681718	238	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	13	2875	2	5.58796	5.9928799999999995	6.3978	3.3211e-5	9.27469e-7	0.00320976	9.94031e-5
chr13	97363435	97363535	5632225	0	+	0.49	(0.485,0.523]	chr13	553214	54	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000449284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	768	2	5.39021	5.99271	6.59521	2.36803e-4	7.97092e-7	0.0086821	9.0574e-5
chr1	246232423	246232523	703109	0	-	0.42	(0.419,0.45]	chr1	82422	388	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	103	2	5.55739	5.9924	6.42741	0.0310506	5.39517e-4	0.119758	0.00920925
chr1	9904806	9904906	398783	0	-	0.43	(0.419,0.45]	chr1	45393	117	INTRON	INTRON	CTNNBIP1	ENSG00000178585.15	ENST00000377263.6:ENST00000400904.7	protein_coding	protein_coding	protein_coding	protein_coding	0	100	2	5.93719	5.992215	6.04724	0.0176643	0.00142238	0.0909046	0.0181715
chr11	70774160	70774260	5062023	0	-	0.42	(0.419,0.45]	chr11	492701	563	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	100	2	5.93719	5.992215	6.04724	0.0176643	0.00142238	0.0909046	0.0181715
chr10	5648569	5648669	4622427	0	-	0.61	(0.58,1]	chr10	441816	2	SS5_PROX	SS5_PROX:INTRON	ASB13	ENSG00000196372.13	ENST00000357700.11:ENST00000479033.1:ENST00000459912.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	94	2	5.8019	5.9922	6.1825	0.007984	2.66047e-4	0.0596361	0.00556524
chr13	26254282	26254372	5551188	0	+	0.766667	(0.58,1]	chr13	547911	3	UTR5	UTR5:EXON_MRNA	CDK8	ENSG00000132964.12	ENST00000536792.5:ENST00000381527.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	94	2	5.8019	5.9922	6.1825	0.007984	2.66047e-4	0.0596361	0.00556524
chr3	30636146	30636246	1433388	0	+	0.51	(0.485,0.523]	chr3	153006	29	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4:ENST00000673250.1:ENST00000672866.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	561	2	5.78433	5.992195	6.20006	2.67882e-4	2.97833e-6	0.00927782	2.18763e-4
chr12	132533664	132533764	5352952	0	+	0.64	(0.58,1]	chr12	523670	53	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	94	2	5.98322	5.992005000000001	6.00079	0.00562007	4.59827e-4	0.0493906	0.00821903
chr19	2441119	2441218	7309597	0	-	0.59596	(0.58,1]	chr19	753890	22	INTRON	INTRON	LMNB2	ENSG00000176619.13	ENST00000325327.4	protein_coding	protein_coding	protein_coding	protein_coding	0	94	2	5.98322	5.992005000000001	6.00079	0.00562007	4.59827e-4	0.0493906	0.00821903
chr7	139663989	139664089	3722785	0	-	0.61	(0.58,1]	chr7	357498	319	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	94	2	5.98322	5.992005000000001	6.00079	0.00562007	4.59827e-4	0.0493906	0.00821903
chr4	101291931	101292031	2292598	0	-	0.42	(0.419,0.45]	chr4	230565	507	INTRON	INTRON	PPP3CA	ENSG00000138814.17	ENST00000512215.5:ENST00000394854.8:ENST00000323055.10:ENST00000394853.8:ENST00000507176.5:ENST00000529324.5:ENST00000525819.1	protein_coding	protein_coding	protein_coding	protein_coding	0	100	2	5.8512	5.991455	6.13171	0.0201381	0.00115219	0.0973365	0.0157112
chr5	73699173	73699273	2452422	0	+	0.48	(0.45,0.485]	chr5	244920	139	INTRON	INTRON	ARHGEF28	ENSG00000214944.10	ENST00000545377.5:ENST00000296794.10:ENST00000513042.7:ENST00000509848.5:ENST00000426542.6:ENST00000437974.5	protein_coding	protein_coding	protein_coding	protein_coding	2	359	2	4.1664	5.99142	7.81644	0.00328696	5.19579e-6	0.0367892	3.24753e-4
chr19	15645518	15645618	7215409	0	+	0.55	(0.523,0.58]	chr19	737140	4	SS3_PROX	SS3_PROX:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	114	2	5.25403	5.99086	6.72769	0.00573579	0.00275419	0.0467736	0.0332418
chr17	15466160	15466260	6860096	0	-	0.5	(0.485,0.523]	chr17	695067	127	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	260	2	4.27883	5.99068	7.70253	0.00550526	5.61759e-6	0.0489901	3.43198e-4
chr2	10189904	10190004	718200	0	+	0.47	(0.45,0.485]	chr2	84002	338	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	98	2	5.93034	5.99047	6.0506	0.0130794	9.38528e-4	0.0782396	0.0135546
chr4	66146095	66146195	2049478	0	+	0.43	(0.419,0.45]	chr4	209657	103	INTRON	INTRON	ENSG00000249413	ENSG00000249413.2	ENST00000508572.1	lncRNA	lncRNA	lncRNA	lncRNA	0	106	2	5.40477	5.990135	6.5755	0.0385125	3.64701e-4	0.131324	0.00699922
chr11	68264166	68264266	5057261	0	-	0.5	(0.485,0.523]	chr11	492360	3	SS3_PROX	SS3_PROX:INTRON	C11orf24	ENSG00000171067.11	ENST00000304271.11:ENST00000533310.5:ENST00000530166.5:ENST00000527280.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	107	2	5.44489	5.98998	6.53507	0.00392199	0.00377098	0.0404814	0.0353672
chrX	85976870	85976970	8079131	0	-	0.36	(0.33,0.36]	chrX	842686	49	INTRON	INTRON	CHM	ENSG00000188419.14	ENST00000357749.7:ENST00000467744.2:ENST00000615443.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	109	2	5.4188	5.98997	6.56114	0.00513015	0.00455773	0.0438198	0.0435186
chrX	19682328	19682427	7990855	0	-	0.424242	(0.419,0.45]	chrX	836028	115	INTRON	INTRON	SH3KBP1	ENSG00000147010.18	ENST00000397821.8:ENST00000379698.8:ENST00000379726.7:ENST00000379697.7:ENST00000494961.5:ENST00000432234.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	100	2	5.98805	5.9899249999999995	5.9918	0.0162379	0.00164584	0.0873195	0.0202325
chr12	49385356	49385455	5225347	0	+	0.474747	(0.45,0.485]	chr12	507159	137	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549538.5:ENST00000549412.5:ENST00000550643.5:ENST00000548654.5:ENST00000548710.5:ENST00000549179.5:ENST00000548377.5:ENST00000549298.5:ENST00000552918.6:ENST00000549375.5:ENST00000553127.5:ENST00000321898.10:ENST00000551540.5:ENST00000548777.5:ENST00000552171.1:ENST00000547865.5:ENST00000548388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	264	2	4.30943	5.989705	7.66998	0.00572923	8.24934e-6	0.0499023	4.47929e-4
chr16	81550080	81550180	6508794	0	+	0.57	(0.523,0.58]	chr16	645911	542	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	257	2	4.61466	5.989545	7.36443	0.00290852	1.54352e-5	0.0342042	6.98728e-4
chr2	10190403	10190503	718205	0	+	0.54	(0.523,0.58]	chr2	84002	343	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	212	2	4.85205	5.98948	7.12691	0.00127326	2.0559e-4	0.0217367	0.00461335
chr1	29289182	29289282	78919	0	+	0.41	(0.39,0.419]	chr1	8984	1	SS3_PROX	SS3_PROX:INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2:ENST00000415600.6:ENST00000531385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	102	2	5.56518	5.98931	6.41344	0.027797	4.94825e-4	0.112962	0.00865935
chr9	137742271	137742371	4265716	0	+	0.47	(0.45,0.485]	chr9	407364	31	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1:ENST00000495657.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	99	2	5.6833	5.9891950000000005	6.29509	0.0195193	4.85904e-4	0.0955413	0.00857996
chr17	42263882	42263982	6903739	0	-	0.44	(0.419,0.45]	chr17	702203	314	INTRON	INTRON	STAT5B	ENSG00000173757.10	ENST00000293328.8:ENST00000468312.1:ENST00000415845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	106	2	5.57051	5.98919	6.40787	0.00835435	0.00441471	0.0613588	0.0393688
chr6	31735661	31735761	3119442	0	-	0.52	(0.485,0.523]	chr6	303332	10	INTRON	INTRON	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000616760.1:ENST00000375784.8	protein_coding	protein_coding	protein_coding	protein_coding	2	561	2	5.80728	5.989140000000001	6.171	2.55257e-4	3.27856e-6	0.00904796	2.34008e-4
chr10	101364939	101365035	4748796	0	-	0.354167	(0.33,0.36]	chr10	453892	2	EXON_SMALL	EXON_SMALL	RNU2-59P	ENSG00000222414.1	ENST00000410482.1	snRNA	snRNA	snRNA	snRNA	0	100	2	5.64702	5.98909	6.33116	0.0212683	5.26307e-4	0.0996805	0.00904627
chr8	22387663	22387762	3770225	0	+	0.585859	(0.58,1]	chr8	362727	78	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	3	313	2	4.38701	5.98884	7.59067	1.70527e-4	5.65666e-5	0.00729818	0.00179587
chr10	50187018	50187116	4686534	0	-	0.44898	(0.419,0.45]	chr10	446863	44	UTR3	UTR3:EXON_MRNA	ASAH2	ENSG00000188611.17	ENST00000395526.9:ENST00000682911.1	protein_coding	protein_coding	protein_coding	protein_coding	1	246	2	5.51033	5.988605	6.46688	0.00757951	5.2048e-5	0.0579104	0.00169273
chr2	239371701	239371801	1392429	0	-	0.61	(0.58,1]	chr2	148759	184	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	206	2	5.49469	5.98852	6.48235	0.00202884	1.39874e-5	0.0283135	6.49469e-4
chr11	378124	378223	4784081	0	+	0.535354	(0.523,0.58]	chr11	457781	4	INTRON	INTRON	B4GALNT4	ENSG00000182272.12	ENST00000329962.11	protein_coding	protein_coding	protein_coding	protein_coding	1	216	2	4.66305	5.98832	7.31359	8.79392e-4	3.60484e-4	0.0176886	0.00694446
chr2	113725077	113725177	1258931	0	-	0.3	(0.29,0.33]	chr2	135590	3	SS5_PROX	SS5_PROX:INTRON	SLC35F5	ENSG00000115084.15	ENST00000245680.7:ENST00000409106.5:ENST00000459683.5:ENST00000470204.2:ENST00000447673.1:ENST00000485214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	98	2	5.69884	5.98831	6.27778	0.0155382	4.58752e-4	0.0849828	0.00821903
chr21	8811066	8811166	7637426	0	-	0.56	(0.523,0.58]	chr21	798930	35	INTRON	INTRON	ENSG00000286033	ENSG00000286033.1	ENST00000651312.1	lncRNA	lncRNA	lncRNA	lncRNA	0	97	2	5.93864	5.9881	6.03756	0.0114442	7.92905e-4	0.0723462	0.0120621
chr18	39790513	39790612	7152322	0	-	0.353535	(0.33,0.36]	chr18	727137	59	INTRON	INTRON	MIR924HG	ENSG00000267374.3	ENST00000670992.1:ENST00000591629.2:ENST00000662708.1:ENST00000663592.1:ENST00000665749.1:ENST00000668737.1:ENST00000666611.1:ENST00000658829.1:ENST00000670388.1:ENST00000653594.1:ENST00000660099.1:ENST00000655349.1:ENST00000665416.1:ENST00000652839.1:ENST00000654975.1:ENST00000652860.1:ENST00000664919.1:ENST00000667722.1:ENST00000653742.1:ENST00000666181.1:ENST00000654966.1:ENST00000670121.1:ENST00000669520.1:ENST00000663334.1:ENST00000656839.1:ENST00000658956.1:ENST00000654956.1:ENST00000658494.1:ENST00000689119.1:ENST00000657401.1:ENST00000661169.1	lncRNA	lncRNA	lncRNA	lncRNA	0	106	2	5.34082	5.9878599999999995	6.6349	0.0338211	2.28734e-4	0.124319	0.0049799
chr2	87653724	87653824	849196	0	+	0.44	(0.419,0.45]	chr2	95792	171	INTRON	INTRON	ENSG00000284879	ENSG00000284879.1	ENST00000643276.1:ENST00000646855.1	lncRNA	lncRNA	lncRNA	lncRNA	0	102	2	5.59315	5.987645	6.38214	0.029494	6.07209e-4	0.116079	0.0100293
chr1	63604815	63604915	156973	0	+	0.39	(0.36,0.39]	chr1	17894	47	INTRON	INTRON	PGM1	ENSG00000079739.17	ENST00000371084.8:ENST00000650546.1:ENST00000540265.5	protein_coding	protein_coding	protein_coding	protein_coding	0	100	2	5.87084	5.98761	6.10438	0.0117824	0.00196738	0.073726	0.022768300000000002
chr8	140957625	140957725	4092705	0	-	0.3	(0.29,0.33]	chr8	388926	29	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	102	2	5.44135	5.987405	6.53346	0.0236557	2.22768e-4	0.105002	0.00489571
chr7	67136591	67136691	3385398	0	+	0.38	(0.36,0.39]	chr7	326601	186	INTRON	INTRON	TYW1	ENSG00000198874.14	ENST00000359626.10:ENST00000361660.8:ENST00000495971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	99	2	5.86038	5.9867550000000005	6.11313	0.0174081	0.00107374	0.0901374	0.0148869
chr8	80154740	80154839	4005936	0	-	0.292929	(0.29,0.33]	chr8	382863	345	INTRON	INTRON	TPD52	ENSG00000076554.16	ENST00000518937.6:ENST00000379096.9:ENST00000519303.6:ENST00000521354.5:ENST00000518517.5:ENST00000521241.6:ENST00000523753.5:ENST00000519250.5:ENST00000520795.5:ENST00000521561.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	104	2	5.52772	5.9863	6.44488	0.00411483	0.00324812	0.0414433	0.0319647
chr1	24166144	24166243	427308	0	-	0.484848	(0.45,0.485]	chr1	50484	41	INTRON	INTRON	IFNLR1	ENSG00000185436.12	ENST00000327535.6:ENST00000327575.6:ENST00000374421.7:ENST00000374419.1:ENST00000374418.3	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.95894	5.986000000000001	6.01306	0.0113949	0.00119342	0.0723462	0.016037
chr1	1032015	1032115	1035	0	+	0.67	(0.58,1]	chr1	166	92	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.59324	5.98573	6.37822	0.00252415	0.0014734	0.031696	0.0185589
chr3	141424618	141424717	1588197	0	+	0.393939	(0.39,0.419]	chr3	167761	190	INTRON	INTRON	ZBTB38	ENSG00000177311.12	ENST00000509842.5:ENST00000321464.7:ENST00000507722.5:ENST00000636289.1:ENST00000503809.5:ENST00000513258.5:ENST00000509883.5:ENST00000514251.5:ENST00000637056.1:ENST00000510338.5:ENST00000504673.5:ENST00000513570.1	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.94502	5.98571	6.0264	0.0155393	0.00134695	0.0849828	0.0174765
chr22	45291896	45291994	7738868	0	+	0.530612	(0.523,0.58]	chr22	811371	24	INTRON	INTRON	UPK3A	ENSG00000100373.10	ENST00000216211.9:ENST00000396082.2	protein_coding	protein_coding	protein_coding	protein_coding	0	101	2	5.65959	5.98565	6.31171	0.00594629	0.0021416	0.0506158	0.0240825
chr20	44358048	44358147	7482488	0	+	0.323232	(0.29,0.33]	chr20	779618	18	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5	protein_coding	protein_coding	protein_coding	protein_coding	0	101	2	5.48107	5.985645	6.49022	0.0222022	2.52154e-4	0.101857	0.00535512
chr17	60475674	60475774	6939215	0	-	0.42	(0.419,0.45]	chr17	707510	68	INTRON	INTRON	APPBP2	ENSG00000062725.10	ENST00000083182.8:ENST00000589341.5:ENST00000590244.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	284	2	4.80871	5.985415	7.16212	0.0030498	7.24277e-5	0.035168	0.00215979
chr2	120141203	120141303	887183	0	+	0.44	(0.419,0.45]	chr2	100378	91	INTRON	INTRON	EPB41L5	ENSG00000115109.14	ENST00000263713.10:ENST00000443902.6:ENST00000452780.1	protein_coding	protein_coding	protein_coding	protein_coding	0	118	2	5.04043	5.985325	6.93022	0.0625897	1.38812e-4	0.160305	0.00347953
chr15	55883578	55883678	6272796	0	-	0.56	(0.523,0.58]	chr15	618316	92	INTRON	INTRON	NEDD4	ENSG00000069869.17	ENST00000435532.8:ENST00000338963.6:ENST00000508342.5:ENST00000503468.5:ENST00000508871.5:ENST00000648451.1:ENST00000506154.1:ENST00000502612.5:ENST00000514893.5:ENST00000507063.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	99	2	5.77287	5.985305	6.19774	0.0072907	0.00160162	0.0567247	0.0197827
chr7	98317950	98318045	3648377	0	-	0.568421	(0.523,0.58]	chr7	351235	2	INTRON	INTRON	BAIAP2L1	ENSG00000006453.14	ENST00000005260.9:ENST00000462558.5:ENST00000473569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	99	2	5.77287	5.985305	6.19774	0.0072907	0.00160162	0.0567247	0.0197827
chr11	68352105	68352204	4882479	0	+	0.646465	(0.58,1]	chr11	470548	35	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	100	2	5.54978	5.9852799999999995	6.42078	0.00230938	0.00165911	0.0302623	0.0202545
chr6	143061066	143061113	3013428	0	+	0.744681	(0.58,1]	chr6	294851	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000367596.5	protein_coding	protein_coding	protein_coding	protein_coding	0	100	2	5.54978	5.9852799999999995	6.42078	0.00230938	0.00165911	0.0302623	0.0202545
chr2	119941407	119941506	885427	0	+	0.353535	(0.33,0.36]	chr2	100196	61	INTRON	INTRON	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000430976.5:ENST00000431283.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	99	2	5.88143	5.98526	6.08909	0.0103694	0.00169367	0.0686683	0.0204799
chr5	1055281	1055381	2608373	0	-	0.57	(0.523,0.58]	chr5	259538	14	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10:ENST00000634447.1	protein_coding	protein_coding	protein_coding	protein_coding	1	211	2	4.88128	5.985165	7.08905	0.00137158	1.88282e-4	0.0226056	0.00434954
chr20	34603770	34603870	7547470	0	-	0.38	(0.36,0.39]	chr20	787882	148	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1:ENST00000480175.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	101	2	5.6023	5.98516	6.36802	0.0258522	5.53634e-4	0.109555	0.00941672
chr4	159295680	159295779	2159915	0	+	0.545455	(0.523,0.58]	chr4	218721	127	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5:ENST00000504604.5:ENST00000644902.1:ENST00000511336.5:ENST00000510510.5:ENST00000264431.8:ENST00000514565.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	97	2	5.9758	5.985054999999999	5.99431	0.0104033	9.36996e-4	0.0686837	0.0135546
chr9	123531488	123531588	4397891	0	-	0.45	(0.419,0.45]	chr9	419652	455	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	379	2	4.16064	5.984975	7.80931	0.004444	1.10512e-5	0.043345	5.52474e-4
chr15	74416474	74416574	6319064	0	-	0.57	(0.523,0.58]	chr15	623109	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SEMA7A	ENSG00000138623.10	ENST00000261918.9:ENST00000542748.6:ENST00000543145.6	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.65749	5.984745	6.312	0.0182707	3.69994e-4	0.0921579	0.00704866
chr10	18570258	18570358	4642431	0	-	0.39	(0.36,0.39]	chr10	443321	179	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	101	2	5.76835	5.9846	6.20085	0.0100561	0.00252253	0.0677306	0.0270357
chr11	70791946	70792046	5062201	0	-	0.39	(0.36,0.39]	chr11	492701	741	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	222	2	4.90005	5.98428	7.06851	0.00221433	2.68785e-4	0.0295806	0.00560624
chr16	10549664	10549764	6547449	0	-	0.44	(0.419,0.45]	chr16	651713	16	INTRON	INTRON	EMP2	ENSG00000213853.10	ENST00000359543.8:ENST00000536829.1:ENST00000342147.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	142	2	4.78575	5.98374	7.18173	0.0224633	0.00221619	0.108193	0.0295806
chr5	142858006	142858106	2556934	0	+	0.49	(0.485,0.523]	chr5	253988	848	INTRON	INTRON	ARHGAP26	ENSG00000145819.18	ENST00000274498.9:ENST00000645722.2:ENST00000642734.1:ENST00000378013.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	97	2	5.97221	5.983475	5.99474	0.0103305	9.86421e-4	0.0684871	0.0140716
chr7	7746883	7746983	3316999	0	+	0.33	(0.29,0.33]	chr7	321717	76	INTRON	INTRON	UMAD1	ENSG00000219545.12	ENST00000682710.1:ENST00000463725.5:ENST00000638342.1:ENST00000636849.1:ENST00000639343.1:ENST00000639110.1:ENST00000482067.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	98	2	5.83477	5.98343	6.13209	0.00731667	0.00150459	0.0568523	0.0188758
chr18	48846411	48846511	7059742	0	+	0.41	(0.39,0.419]	chr18	720358	287	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000587860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	99	2	5.7987	5.982985	6.16727	0.0195328	9.41833e-4	0.0955413	0.0135546
chr16	89433822	89433922	6661172	0	-	0.53	(0.523,0.58]	chr16	666753	21	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	97	2	5.75742	5.98291	6.2084	0.0155135	4.95211e-4	0.0849828	0.00865935
chr10	119394697	119394797	4595196	0	+	0.53	(0.523,0.58]	chr10	439179	134	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	100	2	5.69834	5.98277	6.2672	0.00644151	0.00194036	0.0530091	0.0225083
chr11	70777557	70777657	5062057	0	-	0.51	(0.485,0.523]	chr11	492701	597	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	98	2	5.84014	5.982675	6.12521	0.00823189	0.00139792	0.0608959	0.0179863
chr12	93863631	93863731	5292954	0	+	0.51	(0.485,0.523]	chr12	515024	38	INTRON	INTRON	CRADD	ENSG00000169372.13	ENST00000551065.5:ENST00000548483.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	98	2	5.84014	5.982675	6.12521	0.00823189	0.00139792	0.0608959	0.0179863
chr20	46724940	46725040	7488455	0	+	0.41	(0.39,0.419]	chr20	780625	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SLC2A10	ENSG00000197496.6	ENST00000359271.4:ENST00000611837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	108	2	5.45246	5.98263	6.5128	0.00608676	0.00529344	0.0515813	0.044517
chr2	168091125	168091225	1308279	0	-	0.44	(0.419,0.45]	chr2	140215	155	INTRON	INTRON	STK39	ENSG00000198648.11	ENST00000487143.5:ENST00000355999.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	100	2	5.72794	5.98255	6.23716	0.0242188	8.82327e-4	0.106588	0.0129974
chr22	25487824	25487924	7701422	0	+	0.55	(0.523,0.58]	chr22	805972	263	INTRON	INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000686640.1:ENST00000509460.3:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	127	2	4.96714	5.981895	6.99665	0.0108948	0.00164293	0.0706366	0.0250898
chr1	6033491	6033590	6771	0	+	0.434343	(0.419,0.45]	chr1	1420	57	INTRON	INTRON	KCNAB2	ENSG00000069424.16	ENST00000655548.1:ENST00000378111.6:ENST00000378097.6:ENST00000666163.1:ENST00000671676.1:ENST00000658883.1:ENST00000658691.1:ENST00000435937.6:ENST00000445501.6:ENST00000478098.5:ENST00000653262.1:ENST00000668706.1:ENST00000389632.9:ENST00000654144.1:ENST00000341524.6:ENST00000462676.3:ENST00000428161.6:ENST00000352527.6:ENST00000663169.1:ENST00000653635.1:ENST00000661248.1:ENST00000656198.1:ENST00000602612.5:ENST00000481789.2:ENST00000656746.1:ENST00000665338.1:ENST00000666299.1:ENST00000652845.1:ENST00000655703.1:ENST00000669250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	101	2	5.62805	5.9817350000000005	6.33542	0.0280406	6.85495e-4	0.113651	0.0108846
chr2	161327157	161327257	939071	0	+	0.42	(0.419,0.45]	chr2	103725	79	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	0	101	2	5.62805	5.9817350000000005	6.33542	0.0280406	6.85495e-4	0.113651	0.0108846
chr20	23634583	23634668	7537528	0	-	0.647059	(0.58,1]	chr20	786640	2	INTRON	INTRON	CST3	ENSG00000101439.9	ENST00000398411.5:ENST00000398409.1:ENST00000376925.8	protein_coding	protein_coding	protein_coding	protein_coding	1	195	2	5.04993	5.981645	6.91336	7.98131e-4	6.39597e-5	0.0167692	0.00196197
chr3	63982642	63982740	1495227	0	+	0.357143	(0.33,0.36]	chr3	160352	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATXN7	ENSG00000163635.20	ENST00000674280.1:ENST00000474112.5:ENST00000295900.10:ENST00000487717.5:ENST00000522345.2:ENST00000484332.1:ENST00000466529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	99	2	5.68109	5.98156	6.28203	0.0201622	6.00348e-4	0.0973366	0.00994732
chr1	43559224	43559323	107031	0	+	0.626263	(0.58,1]	chr1	13192	49	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	1198	2	5.75411	5.9815450000000006	6.20898	1.30368e-5	2.31086e-7	0.00209785	4.0093e-5
chr19	17484421	17484521	7220777	0	+	0.51	(0.485,0.523]	chr19	738264	3	SS5_PROX	SS5_PROX:INTRON	SLC27A1	ENSG00000130304.17	ENST00000600277.5:ENST00000598424.5:ENST00000252595.12:ENST00000599380.5:ENST00000600297.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	111	2	5.30159	5.98123	6.66087	0.00529578	0.00309962	0.044517	0.0355173
chr19	56595828	56595928	7295037	0	+	0.48	(0.45,0.485]	chr19	751226	4	SS5_PROX	SS5_PROX:INTRON	ZNF71	ENSG00000197951.10	ENST00000328070.10:ENST00000599599.7:ENST00000594944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	215	2	5.02975	5.981225	6.9327	0.00220534	1.43387e-4	0.0295736	0.00356495
chr3	187043979	187044079	1651430	0	+	0.43	(0.419,0.45]	chr3	173692	1	SS5_PROX	SS5_PROX:INTRON	ST6GAL1	ENSG00000073849.16	ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000676633.1:ENST00000448044.5:ENST00000416235.6:ENST00000448449.1:ENST00000464827.1:ENST00000442023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	101	2	5.79433	5.981225	6.16812	0.0123115	0.00262626	0.0756356	0.0278348
chr1	21616130	21616226	419621	0	-	0.489583	(0.485,0.523]	chr1	48980	17	INTRON	INTRON	RAP1GAP	ENSG00000076864.21	ENST00000374765.9:ENST00000471600.6:ENST00000374761.6:ENST00000374763.6:ENST00000542643.6:ENST00000611549.4:ENST00000495204.5:ENST00000374757.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	100	2	5.69477	5.981199999999999	6.26763	0.00639185	0.00203227	0.0529032	0.0232814
chr7	566162	566261	3523746	0	-	0.434343	(0.419,0.45]	chr7	340370	143	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000400758.6	protein_coding	protein_coding	protein_coding	protein_coding	0	102	2	5.55739	5.9811700000000005	6.40495	0.0310506	5.72149e-4	0.119758	0.00960229
chr8	43100468	43100568	3811235	0	+	0.59	(0.58,1]	chr8	367069	2	SS5_PROX	SS5_PROX:INTRON	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000331373.10:ENST00000674727.1:ENST00000518991.6:ENST00000676163.1:ENST00000675129.1:ENST00000675791.1:ENST00000675013.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	95	2	5.79283	5.98114	6.16945	0.00387582	8.4246e-4	0.0401256	0.0125912
chr1	21905098	21905198	422232	0	-	0.51	(0.485,0.523]	chr1	49642	84	INTRON	INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	0	97	2	5.94031	5.981055	6.0218	0.00985907	0.00107389	0.0670775	0.0148869
chr10	75884124	75884224	4525010	0	+	0.37	(0.36,0.39]	chr10	432292	2	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	224	2	5.12848	5.98071	6.83294	0.00338675	1.40184e-4	0.0372054	0.00350296
chr7	100580276	100580376	3654719	0	-	0.5	(0.485,0.523]	chr7	352212	16	EXON_MRNA	EXON_MRNA:INTRON	LRCH4	ENSG00000077454.17	ENST00000310300.11:ENST00000467201.5:ENST00000497245.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	106	2	5.44489	5.98053	6.51617	0.00406194	0.00377098	0.0413652	0.0353672
chr7	47473909	47474008	3588547	0	-	0.50505	(0.485,0.523]	chr7	346123	208	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	211	2	4.8844	5.98052	7.07664	0.00139256	1.93157e-4	0.022808	0.00441241
chr20	61971087	61971186	7582825	0	-	0.545455	(0.523,0.58]	chr20	792262	169	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000474089.5	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.62258	5.97968	6.33678	0.0193313	3.44853e-4	0.0954446	0.00672121
chr17	2400207	2400307	6835414	0	-	0.63	(0.58,1]	chr17	691321	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MNT	ENSG00000070444.15	ENST00000174618.5:ENST00000575394.1:ENST00000574559.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	93	2	5.89541	5.979675	6.06394	0.0066708	3.80904e-4	0.0540577	0.00721291
chr20	61971585	61971685	7582830	0	-	0.55	(0.523,0.58]	chr20	792262	174	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000474089.5	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.55012	5.979385	6.40865	0.0217068	2.80789e-4	0.100615	0.00578259
chr22	46290678	46290771	7743257	0	+	0.612903	(0.58,1]	chr22	811892	4	INTRON	INTRON	TTC38	ENSG00000075234.17	ENST00000381031.8:ENST00000451998.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	96	2	5.71628	5.979365	6.24245	0.00334087	0.00104668	0.0368376	0.0146403
chr17	17735853	17735953	6689394	0	+	0.57	(0.523,0.58]	chr17	671344	113	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.80873	5.97912	6.14951	0.00793972	0.00145893	0.0596361	0.0184991
chr22	33914999	33915098	7802819	0	-	0.434343	(0.419,0.45]	chr22	817661	259	INTRON	INTRON	LARGE1	ENSG00000133424.22	ENST00000397394.8:ENST00000413114.6:ENST00000676070.1:ENST00000674543.1:ENST00000676370.1:ENST00000354992.7:ENST00000402320.6:ENST00000674789.1:ENST00000675277.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	105	2	5.57051	5.979075	6.38764	0.00863623	0.00441471	0.0623824	0.0393688
chr1	201137498	201137597	641666	0	-	0.323232	(0.29,0.33]	chr1	75780	13	INTRON	INTRON	TMEM9	ENSG00000116857.17	ENST00000367333.6:ENST00000367334.9:ENST00000367330.6:ENST00000367332.5:ENST00000472411.1:ENST00000495205.1:ENST00000485839.6:ENST00000497582.5:ENST00000455367.5:ENST00000414605.2:ENST00000435310.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	97	2	5.73214	5.97907	6.226	0.0146933	5.29368e-4	0.0826843	0.0090868
chr20	64270688	64270787	7511219	0	+	0.454545	(0.45,0.485]	chr20	783907	23	INTRON	INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609818.1	protein_coding	protein_coding	protein_coding	protein_coding	0	107	2	5.43172	5.979005000000001	6.52629	0.00466172	0.00440365	0.044542	0.0393688
chr10	112710751	112710850	4589108	0	+	0.434343	(0.419,0.45]	chr10	438722	414	INTRON	INTRON	VTI1A	ENSG00000151532.14	ENST00000393077.3:ENST00000432306.5	protein_coding	protein_coding	protein_coding	protein_coding	0	100	2	5.6954	5.978875	6.26235	0.0254103	8.27298e-4	0.108573	0.0124589
chr22	19423320	19423419	7763489	0	-	0.545455	(0.523,0.58]	chr22	813787	122	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	210	2	5.0452	5.9788250000000005	6.91245	0.00193417	1.14382e-4	0.0275437	0.00303044
chr16	85522580	85522680	6518297	0	+	0.57	(0.523,0.58]	chr16	646391	1633	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.73609	5.97868	6.22127	0.00699217	0.0017613	0.0555241	0.0211077
chrX	139790486	139790586	8118523	0	-	0.32	(0.29,0.33]	chrX	845843	6	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000327569.7:ENST00000361648.6:ENST00000460773.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	98	2	5.79977	5.978294999999999	6.15682	0.0069975	0.00164635	0.0555241	0.0202325
chr7	67094564	67094663	3384976	0	+	0.373737	(0.36,0.39]	chr7	326589	107	INTRON	INTRON	TYW1	ENSG00000198874.14	ENST00000359626.10:ENST00000361660.8:ENST00000495971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	101	2	5.73251	5.978255000000001	6.224	0.00967792	0.0027486	0.0661428	0.028553
chr7	217158	217258	3305826	0	+	0.7	(0.58,1]	chr7	320161	78	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	93	2	5.8019	5.97783	6.15376	0.007984	2.90409e-4	0.0596361	0.0059241
chr22	29827600	29827700	7784833	0	-	0.42	(0.419,0.45]	chr22	816448	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ASCC2	ENSG00000100325.15	ENST00000542393.5:ENST00000307790.8:ENST00000458594.5:ENST00000397771.6:ENST00000449900.6:ENST00000431535.5:ENST00000495967.5:ENST00000412689.5:ENST00000465667.6:ENST00000495681.5:ENST00000462454.1:ENST00000453160.5:ENST00000460313.1:ENST00000454854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	230	2	5.22499	5.9777000000000005	6.73041	0.00486702	1.18629e-4	0.0456282	0.00311446
chr15	51084161	51084261	6105417	0	+	0.4	(0.39,0.419]	chr15	601269	461	INTRON	INTRON	MIR4713HG	ENSG00000259240.1	ENST00000559909.1	lncRNA	lncRNA	lncRNA	lncRNA	0	99	2	5.90288	5.977565	6.05225	0.0130948	0.00183094	0.0782739	0.0216571
chr10	77891603	77891703	4719281	0	-	0.5	(0.485,0.523]	chr10	450278	22	INTRON	INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.80515	5.977545	6.14994	0.00788098	0.00153111	0.059464500000000003	0.0191213
chr19	40232686	40232784	7379266	0	-	0.642857	(0.58,1]	chr19	765595	25	UTR3	UTR3:EXON_MRNA	AKT2	ENSG00000105221.18	ENST00000392038.7:ENST00000424901.5:ENST00000483166.5:ENST00000476266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	832	2	5.40073	5.977145	6.55356	5.50108e-5	3.05613e-7	0.00410729	4.7975e-5
chr6	42794359	42794459	2915579	0	+	0.4	(0.39,0.419]	chr6	286289	119	INTRON	INTRON	BICRAL	ENSG00000112624.13	ENST00000614467.4:ENST00000314073.10	protein_coding	protein_coding	protein_coding	protein_coding	0	104	2	5.57892	5.97696	6.375	0.00769302	0.00396694	0.0584869	0.0368027
chr17	78736391	78736491	6978858	0	-	0.51	(0.485,0.523]	chr17	712624	3	SS5_PROX	SS5_PROX:INTRON	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000591574.5:ENST00000589768.5:ENST00000591095.1:ENST00000592497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	290	2	4.18389	5.976935	7.76998	4.00106e-4	3.44588e-4	0.0106222	0.00746375
chr6	57908658	57908757	3158310	0	-	0.414141	(0.39,0.419]	chr6	308154	2	EXON_LNCRNA	EXON_LNCRNA	ENSG00000272316	ENSG00000272316.1	ENST00000606125.1	lncRNA	lncRNA	lncRNA	lncRNA	0	105	2	5.53798	5.9768550000000005	6.41573	0.00718148	0.0043589	0.056408	0.0391245
chr13	112526541	112526641	5752178	0	-	0.47	(0.45,0.485]	chr13	563914	2	SS5_PROX	SS5_PROX:INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000462580.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	98	2	5.6833	5.97659	6.26988	0.0195193	5.20615e-4	0.0955413	0.00899129
chr16	87740623	87740723	6656487	0	-	0.44	(0.419,0.45]	chr16	665893	4	SS5_PROX	SS5_PROX:INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	99	2	5.82136	5.976535	6.13171	0.0210659	0.00115219	0.0996078	0.0157112
chr9	135890254	135890354	4431659	0	-	0.58	(0.523,0.58]	chr9	423549	68	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	97	2	5.69157	5.97635	6.26113	0.0172851	4.27166e-4	0.0897247	0.00779962
chr16	89432724	89432824	6661161	0	-	0.49	(0.485,0.523]	chr16	666753	10	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	340	2	4.43451	5.976155	7.5178	5.7709e-4	9.15309e-5	0.0140531	0.00255735
chr2	241416182	241416281	1076822	0	+	0.464646	(0.45,0.485]	chr2	116969	24	INTRON	INTRON	FARP2	ENSG00000006607.14	ENST00000264042.8:ENST00000627550.2:ENST00000373287.8:ENST00000471447.5:ENST00000485051.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	97	2	5.90167	5.976135	6.0506	0.0137135	9.38528e-4	0.0799457	0.0135546
chr21	8810267	8810367	7637418	0	-	0.57	(0.523,0.58]	chr21	798930	27	INTRON	INTRON	ENSG00000286033	ENSG00000286033.1	ENST00000651312.1	lncRNA	lncRNA	lncRNA	lncRNA	0	97	2	5.8779	5.97595	6.074	0.00906277	0.00121652	0.0637469	0.0162693
chr22	37511720	37511820	7808323	0	-	0.51	(0.485,0.523]	chr22	818436	4	SS5_PROX	SS5_PROX:INTRON	CARD10	ENSG00000100065.15	ENST00000403299.5:ENST00000251973.10:ENST00000437756.5:ENST00000494166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	102	2	5.57523	5.97583	6.37643	0.0052506	0.00274261	0.0476984	0.028553
chr2	32681920	32682020	751033	0	+	0.3	(0.29,0.33]	chr2	87659	26	INTRON	INTRON	TTC27	ENSG00000018699.13	ENST00000317907.9:ENST00000647819.1:ENST00000454690.1:ENST00000438654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	101	2	5.61082	5.9758	6.34078	0.00499711	0.00264971	0.0463896	0.027979
chr5	139654461	139654561	2549705	0	+	0.48	(0.45,0.485]	chr5	253168	29	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	0	97	2	5.84258	5.9756	6.10862	0.0151085	8.0459e-4	0.0841543	0.012189
chr22	48702837	48702936	7751296	0	+	0.656566	(0.58,1]	chr22	812283	91	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	113	2	5.14497	5.97502	6.80507	0.00474658	0.00101308	0.0413976	0.0191342
chr19	1496771	1496846	7187813	0	+	0.493333	(0.485,0.523]	chr19	731383	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	REEP6	ENSG00000115255.12	ENST00000233596.8:ENST00000395479.10:ENST00000395484.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	97	2	5.692	5.974765	6.25753	0.0171772	4.52177e-4	0.0895975	0.00816702
chr5	69261411	69261508	2441449	0	+	0.42268	(0.419,0.45]	chr5	243329	11	INTRON	INTRON	CDK7	ENSG00000134058.12	ENST00000629350.2:ENST00000506563.5:ENST00000515391.5:ENST00000256443.8:ENST00000506789.5:ENST00000510106.5:ENST00000514676.5:ENST00000504147.5:ENST00000508726.5:ENST00000502604.5:ENST00000513629.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	99	2	5.95751	5.974655	5.9918	0.0162379	0.0017735	0.0873195	0.02121
chr12	132531872	132531972	5352934	0	+	0.56	(0.523,0.58]	chr12	523670	35	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	210	2	4.82222	5.974565	7.12691	0.00127326	2.24831e-4	0.0217367	0.00491787
chr17	643494	643593	6823611	0	-	0.454545	(0.45,0.485]	chr17	689804	103	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000680944.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000681830.1:ENST00000679959.1:ENST00000680114.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000570650.2:ENST00000679680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	97	2	5.8121	5.9744399999999995	6.13678	0.0158765	7.46272e-4	0.0859576	0.0115813
chr14	89181597	89181694	6025907	0	-	0.515464	(0.485,0.523]	chr14	591409	4	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000556541.1:ENST00000555010.1:ENST00000557496.1:ENST00000557718.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	97	2	5.87431	5.97437	6.07443	0.00899749	0.00127835	0.0637469	0.0168904
chr6	16586007	16586107	3102698	0	-	0.46	(0.45,0.485]	chr6	300866	1	SS3_PROX	SS3_PROX:INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	97	2	5.95844	5.974295	5.99015	0.0124835	0.00110015	0.0761905	0.015136
chr22	29827476	29827567	7784831	0	-	0.527473	(0.523,0.58]	chr22	816446	1	UTR3	UTR3:EXON_MRNA:INTRON	ASCC2	ENSG00000100325.15	ENST00000542393.5:ENST00000307790.8:ENST00000458594.5:ENST00000397771.6:ENST00000449900.6:ENST00000431535.5:ENST00000495967.5:ENST00000412689.5:ENST00000465667.6:ENST00000495681.5:ENST00000462454.1:ENST00000453160.5:ENST00000460313.1:ENST00000454854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	96	2	5.88072	5.974095	6.06747	0.0126258	7.30845e-4	0.0761905	0.0113963
chr1	17674285	17674385	54954	0	+	0.6	(0.58,1]	chr1	5603	93	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	328	2	3.8583	5.97408	8.08986	3.29831e-4	5.22405e-5	0.00649325	0.00401507
chr11	63871368	63871467	4867127	0	+	0.515152	(0.485,0.523]	chr11	466776	16	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5:ENST00000543674.1:ENST00000540169.5	protein_coding	protein_coding	protein_coding	protein_coding	2	297	2	5.02039	5.973825	6.92726	0.00186327	3.02283e-5	0.0269723	0.00113492
chr11	67152903	67153003	4878761	0	+	0.4	(0.39,0.419]	chr11	469821	38	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000527157.1:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	110	2	5.36155	5.97378	6.58601	0.00648185	0.00536607	0.0503748	0.048165
chr2	665055	665154	1079795	0	-	0.484848	(0.45,0.485]	chr2	117536	13	UTR3	UTR3:EXON_MRNA	TMEM18	ENSG00000151353.15	ENST00000281017.8	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.57854	5.973355	6.36817	0.0230065	3.97249e-4	0.102982	0.00741985
chr6	144690327	144690427	3023973	0	+	0.55	(0.523,0.58]	chr6	295451	114	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000367526.8	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.77287	5.97335	6.17383	0.00760615	0.00160162	0.0579698	0.0197827
chr18	13263144	13263244	7023192	0	+	0.68	(0.58,1]	chr18	717514	438	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000590371.5:ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000590115.1:ENST00000677055.1:ENST00000399848.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	93	2	5.93474	5.973039999999999	6.01134	0.00531709	5.58693e-4	0.047841	0.00944382
chr19	3529302	3529401	7191591	0	+	0.59596	(0.58,1]	chr19	732249	11	INTRON	INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	93	2	5.93474	5.973039999999999	6.01134	0.00531709	5.58693e-4	0.047841	0.00944382
chr21	37458205	37458305	7619892	0	+	0.52	(0.485,0.523]	chr21	796063	15	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	0	100	2	5.65601	5.973035	6.29006	0.00613935	0.00224147	0.0517628	0.024843
chr22	50425703	50425803	7754500	0	+	0.54	(0.523,0.58]	chr22	812542	17	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9:ENST00000401672.7:ENST00000427222.2	protein_coding	protein_coding	protein_coding	protein_coding	0	96	2	5.82039	5.972944999999999	6.1255	0.0139724	6.23263e-4	0.0805959	0.0101764
chr3	71174843	71174943	1827173	0	-	0.38	(0.36,0.39]	chr3	188150	428	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648426.1:ENST00000498215.7:ENST00000484350.5:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000468577.6:ENST00000649513.1:ENST00000649431.2:ENST00000647614.1:ENST00000649760.1:ENST00000650295.1:ENST00000648895.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	98	2	5.88962	5.9729399999999995	6.05626	0.0166261	0.00124043	0.0884836	0.0165207
chr8	128041757	128041855	3920299	0	+	0.418367	(0.39,0.419]	chr8	374321	15	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	1	248	2	5.61276	5.97292	6.33308	0.00825437	3.40806e-5	0.0609913	0.00124024
chr13	113613447	113613547	5659135	0	+	0.4	(0.39,0.419]	chr13	555781	20	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	238	2	5.47108	5.972915	6.47475	0.00649594	5.1925e-5	0.0532359	0.00169158
chr19	324434	324534	7303120	0	-	0.48	(0.45,0.485]	chr19	752407	104	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.75605	5.972735	6.18942	0.00844217	0.002004	0.0617623	0.0230381
chr20	25473662	25473761	7539680	0	-	0.484848	(0.45,0.485]	chr20	786978	32	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5:ENST00000336104.5	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.75605	5.972735	6.18942	0.00844217	0.002004	0.0617623	0.0230381
chr22	28466870	28466970	7779699	0	-	0.34	(0.33,0.36]	chr22	815741	239	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	1	261	2	4.47319	5.97262	7.47205	0.00434418	1.9892e-5	0.0427656	8.36871e-4
chr1	214460343	214460443	659018	0	-	0.48	(0.45,0.485]	chr1	77693	80	INTRON	INTRON	PTPN14	ENSG00000152104.12	ENST00000366956.10:ENST00000543945.5	protein_coding	protein_coding	protein_coding	protein_coding	0	97	2	5.95894	5.972475	5.98601	0.0119228	0.00119342	0.0741726	0.016037
chr17	749351	749441	6824481	0	-	0.555556	(0.523,0.58]	chr17	689920	1	SS5_PROX	SS5_PROX:INTRON	GEMIN4	ENSG00000179409.11	ENST00000319004.6:ENST00000437269.1:ENST00000573482.5:ENST00000570364.5:ENST00000576383.1:ENST00000574958.1	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.51247	5.972155000000001	6.43184	0.0230387	2.62665e-4	0.102982	0.00552802
chr9	130624607	130624706	4253917	0	+	0.40404	(0.39,0.419]	chr9	405164	5	INTRON	INTRON	FUBP3	ENSG00000107164.16	ENST00000319725.10:ENST00000650723.1:ENST00000487406.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	98	2	5.88826	5.9719750000000005	6.05569	0.0169925	0.0012512	0.0889149	0.0166412
chr7	2378495	2378591	3308508	0	+	0.572917	(0.523,0.58]	chr7	320690	8	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000475415.5:ENST00000468611.5:ENST00000465670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	210	2	5.12067	5.971845	6.82302	0.00229691	9.0674200000000007e-05	0.0302623	0.00254217
chr1	85464542	85464642	520007	0	-	0.56	(0.523,0.58]	chr1	61356	4	SS5_PROX	SS5_PROX:INTRON	DDAH1	ENSG00000153904.21	ENST00000426972.8:ENST00000284031.13	protein_coding	protein_coding	protein_coding	protein_coding	1	210	2	4.79176	5.971685	7.15161	0.0012128	2.4626e-4	0.0210863	0.00524985
chr3	58283487	58283587	1485217	0	+	0.48	(0.45,0.485]	chr3	159880	83	INTRON	INTRON	ABHD6	ENSG00000163686.15	ENST00000295962.8:ENST00000478253.6	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.8269	5.97168	6.11646	0.00956667	0.00167585	0.0658012	0.0203806
chr14	75813125	75813224	5888935	0	+	0.40404	(0.39,0.419]	chr14	575180	95	INTRON	INTRON	TTLL5	ENSG00000119685.20	ENST00000298832.14:ENST00000557636.5:ENST00000556893.5:ENST00000554510.5:ENST00000555018.3:ENST00000608522.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	98	2	5.91692	5.97166	6.0264	0.0162442	0.00134695	0.0873195	0.0174765
chr2	91629253	91629353	1217377	0	-	0.41	(0.39,0.419]	chr2	131097	3	SS3_PROX	SS3_PROX:INTRON	LSP1P4	ENSG00000143429.11	ENST00000692025.1:ENST00000423774.3:ENST00000609777.6:ENST00000692653.1:ENST00000608501.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	696	2	5.52269	5.9716450000000005	6.4206	1.209e-4	4.45627e-5	0.00610306	0.00151164
chr14	73094826	73094926	5880332	0	+	0.53	(0.523,0.58]	chr14	574016	60	INTRON	INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000531500.5:ENST00000261973.12:ENST00000532683.5:ENST00000525321.5:ENST00000526754.5:ENST00000528081.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	96	2	5.96674	5.97127	5.9758	0.0109075	9.36996e-4	0.0707085	0.0135546
chr17	56892921	56893017	6931127	0	-	0.479167	(0.45,0.485]	chr17	706271	3	INTRON	INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000574234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	100	2	5.50422	5.970975	6.43773	0.0257993	3.27319e-4	0.109555	0.00645438
chr6	16367267	16367367	3100505	0	-	0.41	(0.39,0.419]	chr6	300842	384	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8	protein_coding	protein_coding	protein_coding	protein_coding	0	101	2	5.52851	5.970974999999999	6.41344	0.029339	4.94825e-4	0.116079	0.00865935
chr16	29270013	29270113	6433537	0	+	0.57	(0.523,0.58]	chr16	636745	179	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	1	273	2	5.05843	5.970470000000001	6.88251	0.00120649	6.90788e-5	0.0210633	0.00208248
chr17	77485824	77485924	6805240	0	+	0.48	(0.45,0.485]	chr17	686821	18	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	221	2	4.54047	5.970470000000001	7.40047	8.99052e-4	5.92094e-4	0.0178386	0.00985627
chr12	96923746	96923844	5301882	0	+	0.459184	(0.45,0.485]	chr12	516017	33	INTRON	INTRON	NEDD1	ENSG00000139350.12	ENST00000429527.6:ENST00000557478.5:ENST00000555806.5:ENST00000411739.6:ENST00000555114.5:ENST00000266742.9:ENST00000557454.1:ENST00000553609.5:ENST00000557400.5:ENST00000557644.5:ENST00000457368.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	97	2	5.92705	5.970055	6.01306	0.0113949	0.00129636	0.0723462	0.0170746
chr17	43543279	43543379	6909601	0	-	0.55	(0.523,0.58]	chr17	703271	64	INTRON	INTRON	ETV4	ENSG00000175832.13	ENST00000538265.5:ENST00000319349.10:ENST00000393664.6:ENST00000545954.5:ENST00000545089.5:ENST00000591713.5:ENST00000590236.5:ENST00000585508.5:ENST00000587151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	551	2	5.76348	5.96994	6.1764	2.8231e-4	3.03283e-6	0.0095543	2.2176e-4
chr3	48088072	48088172	1765946	0	-	0.49	(0.485,0.523]	chr3	182011	718	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	0	96	2	5.78967	5.96987	6.15007	0.0146211	6.0909e-4	0.0826064	0.0100377
chr7	22161505	22161603	3548220	0	-	0.489796	(0.485,0.523]	chr7	342914	5	INTRON	INTRON	RAPGEF5	ENSG00000136237.19	ENST00000665637.1:ENST00000401957.6:ENST00000344041.10:ENST00000620335.4:ENST00000458533.5:ENST00000451559.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	298	2	5.33785	5.969625000000001	6.6014	6.78125e-4	1.68998e-4	0.0153241	0.0040111
chr15	56958674	56958774	6110743	0	+	0.52	(0.485,0.523]	chr15	601587	372	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	254	2	4.35557	5.96962	7.58367	0.00476187	8.23315e-6	0.0450109	4.47628e-4
chr21	44810898	44810997	7678242	0	-	0.59596	(0.58,1]	chr21	802721	14	INTRON	INTRON	SUMO3	ENSG00000184900.16	ENST00000479153.1:ENST00000411651.6:ENST00000332859.11:ENST00000397898.7:ENST00000397893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	194	2	4.89744	5.969525	7.04161	5.99793e-4	1.06039e-4	0.0143535	0.00286177
chr17	80223936	80224036	6806858	0	+	0.63	(0.58,1]	chr17	687275	2	INTRON	INTRON	SLC26A11	ENSG00000181045.15	ENST00000361193.8:ENST00000546047.6:ENST00000411502.7:ENST00000571888.5:ENST00000576126.5:ENST00000572725.5:ENST00000571564.5:ENST00000571176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	258	2	4.51543	5.969135	7.42284	2.51834e-4	8.21589e-5	0.0089838	0.00236215
chr2	74968414	74968513	837749	0	+	0.555556	(0.523,0.58]	chr2	94723	71	INTRON	INTRON	POLE4	ENSG00000115350.12	ENST00000483063.2:ENST00000233699.8:ENST00000465242.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	96	2	5.94389	5.969099999999999	5.99431	0.0104033	0.0010207	0.0686837	0.0143498
chr2	101032664	101032757	1238899	0	-	0.44086	(0.419,0.45]	chr2	133727	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TBC1D8	ENSG00000204634.13	ENST00000409318.2:ENST00000376840.8:ENST00000473937.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	224	2	5.04069	5.968864999999999	6.89704	0.0036542	1.99954e-4	0.0389784	0.00453435
chr1	43564305	43564405	107082	0	+	0.64	(0.58,1]	chr1	13192	100	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	94	2	5.79283	5.9685500000000005	6.14427	0.00407804	8.4246e-4	0.0413652	0.0125912
chr22	32671858	32671958	7791377	0	-	0.47	(0.45,0.485]	chr22	817442	416	INTRON	INTRON	SYN3	ENSG00000185666.15	ENST00000358763.7:ENST00000462268.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	120	2	4.89685	5.968265	7.03968	0.0614781	5.71642e-5	0.158506	0.00180869
chr14	70026943	70027043	5872652	0	+	0.45	(0.419,0.45]	chr14	573363	31	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	1	228	2	4.56564	5.96718	7.36872	0.00158557	7.35568e-4	0.0245893	0.0114587
chr11	70787549	70787649	5062157	0	-	0.56	(0.523,0.58]	chr11	492701	697	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	98	2	5.73609	5.966915	6.19774	0.0072907	0.0017613	0.0567247	0.0211077
chr17	80024201	80024301	6982158	0	-	0.66	(0.58,1]	chr17	713081	102	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7	protein_coding	protein_coding	protein_coding	protein_coding	1	193	2	4.99086	5.96686	6.94286	7.47593e-4	7.78776e-5	0.0161372	0.00227427
chr5	73738444	73738544	2452815	0	+	0.46	(0.45,0.485]	chr5	244920	532	INTRON	INTRON	ARHGEF28	ENSG00000214944.10	ENST00000545377.5:ENST00000296794.10:ENST00000513042.7:ENST00000509848.5:ENST00000426542.6:ENST00000437974.5	protein_coding	protein_coding	protein_coding	protein_coding	1	213	2	4.82762	5.966825	7.10603	0.00158793	2.60077e-4	0.0245893	0.00549835
chr15	65367815	65367915	6303646	0	-	0.58	(0.523,0.58]	chr15	621389	116	INTRON	INTRON	IGDCC3	ENSG00000174498.14	ENST00000327987.9	protein_coding	protein_coding	protein_coding	protein_coding	0	100	2	5.43411	5.966675	6.49924	0.026041	2.16101e-4	0.109673	0.00477041
chr1	92744622	92744722	531118	0	-	0.48	(0.45,0.485]	chr1	62237	76	INTRON	INTRON	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2:ENST00000474806.1:ENST00000466778.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	98	2	5.79191	5.96655	6.14119	0.00917101	0.00183113	0.064285	0.0216571
chr3	60221630	60221730	1795823	0	-	0.47	(0.45,0.485]	chr3	186807	1409	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.79191	5.96655	6.14119	0.00917101	0.00183113	0.064285	0.0216571
chr9	37089740	37089839	4148277	0	+	0.454545	(0.45,0.485]	chr9	394627	49	EXON_LNCRNA	EXON_LNCRNA	EBLN3P	ENSG00000281649.3	ENST00000660341.1:ENST00000625445.1:ENST00000658888.2:ENST00000664382.1:ENST00000654889.1	lncRNA	lncRNA	lncRNA	lncRNA	0	98	2	5.79191	5.96655	6.14119	0.00917101	0.00183113	0.064285	0.0216571
chr8	22064036	22064134	3769012	0	+	0.520408	(0.485,0.523]	chr8	362410	42	INTRON	INTRON	DMTN	ENSG00000158856.19	ENST00000522148.5:ENST00000523300.5:ENST00000519959.1:ENST00000381470.7:ENST00000519850.5:ENST00000432128.6:ENST00000443491.6:ENST00000517305.5:ENST00000518816.5:ENST00000517600.5:ENST00000523782.6:ENST00000520856.1:ENST00000523623.5:ENST00000358242.6:ENST00000520174.5:ENST00000517804.5:ENST00000265800.9:ENST00000517418.5:ENST00000523266.5:ENST00000519907.5:ENST00000415253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	297	2	5.33153	5.9664649999999995	6.6014	6.86989e-4	1.68998e-4	0.0154413	0.0040111
chr14	65031958	65032058	5846078	0	+	0.47	(0.45,0.485]	chr14	572209	2	SS3_PROX	SS3_PROX:INTRON	FNTB	ENSG00000257365.8	ENST00000246166.3:ENST00000554210.5:ENST00000554334.5:ENST00000556709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	99	2	5.71928	5.966115	6.21295	0.00810629	0.00219685	0.0602166	0.0245167
chr3	13200326	13200425	1691145	0	-	0.515152	(0.485,0.523]	chr3	176566	358	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.55054	5.9660150000000005	6.38149	0.0215787	3.18797e-4	0.100612	0.00634142
chr18	12533877	12533977	7121627	0	-	0.41	(0.39,0.419]	chr18	724785	178	INTRON	INTRON	SPIRE1	ENSG00000134278.16	ENST00000409402.9:ENST00000410092.7:ENST00000309836.9:ENST00000440472.6:ENST00000453447.6:ENST00000449797.5:ENST00000497844.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	102	2	5.45224	5.96601	6.47978	0.032783	4.14458e-4	0.122593	0.00767522
chr2	19978150	19978250	1096218	0	-	0.41	(0.39,0.419]	chr2	119511	21	INTRON	INTRON	WDR35	ENSG00000118965.16	ENST00000281405.9:ENST00000345530.8:ENST00000414212.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	102	2	5.45224	5.96601	6.47978	0.032783	4.14458e-4	0.122593	0.00767522
chr13	113055503	113055603	5656192	0	+	0.44	(0.419,0.45]	chr13	555189	7	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.86184	5.96593	6.07002	0.0143746	0.00223565	0.0821732	0.024843
chr7	208099	208198	3305735	0	+	0.676768	(0.58,1]	chr7	320155	107	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6:ENST00000477004.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	93	2	5.86553	5.9657599999999995	6.06599	0.00477081	6.8352e-4	0.0450109	0.0108717
chr9	120858786	120858875	4387657	0	-	0.505618	(0.485,0.523]	chr9	418637	1	INTRON	INTRON	PHF19	ENSG00000119403.15	ENST00000373896.8:ENST00000419155.5:ENST00000616568.5:ENST00000487555.5:ENST00000462229.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	97	2	5.623	5.9657	6.3084	0.0192139	3.92049e-4	0.095424900000000007	0.00735595
chr21	44858962	44859062	7678424	0	-	0.55	(0.523,0.58]	chr21	802754	22	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000397886.3:ENST00000474737.5:ENST00000494690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	109	2	5.30515	5.965375	6.6256	0.00509102	0.00333843	0.0433513	0.0368376
chr18	36794806	36794906	7146092	0	-	0.4	(0.39,0.419]	chr18	726936	8	UTR3	UTR3:EXON_MRNA:INTRON	TPGS2	ENSG00000134779.15	ENST00000590258.2:ENST00000590652.5:ENST00000614939.4:ENST00000587129.5:ENST00000610723.4:ENST00000590842.5:ENST00000591906.5:ENST00000587382.5:ENST00000334295.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	102	2	5.61872	5.96519	6.31166	0.00855563	0.00361685	0.0621561	0.0342681
chr8	38447182	38447282	3968095	0	-	0.39	(0.36,0.39]	chr8	379315	33	INTRON	INTRON	FGFR1	ENSG00000077782.22	ENST00000649678.1:ENST00000397091.9:ENST00000619564.3:ENST00000447712.7:ENST00000341462.9:ENST00000532791.5:ENST00000674380.1:ENST00000674189.1:ENST00000683765.1:ENST00000425967.8:ENST00000683948.1:ENST00000397113.6:ENST00000356207.9:ENST00000335922.9:ENST00000683815.1:ENST00000684654.1:ENST00000326324.10:ENST00000674474.1:ENST00000397103.5:ENST00000397108.8:ENST00000487647.5:ENST00000530701.1:ENST00000470826.5:ENST00000683276.1:ENST00000683795.1:ENST00000496296.5:ENST00000527203.5:ENST00000533668.5:ENST00000525001.5:ENST00000526742.5:ENST00000529552.5:ENST00000484370.5:ENST00000530568.5:ENST00000434187.5:ENST00000397090.4:ENST00000413133.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	122	2	4.885	5.96519	7.04538	0.0697729	8.55021e-5	0.167185	0.00243663
chr4	4439608	4439708	2184987	0	-	0.34	(0.33,0.36]	chr4	221823	7	INTRON	INTRON	STX18	ENSG00000168818.10	ENST00000505286.5:ENST00000306200.7:ENST00000503861.5:ENST00000512195.5:ENST00000507908.5:ENST00000512780.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	97	2	5.94593	5.964865	5.9838	0.0123642	0.00143977	0.0758857	0.0183435
chr17	748879	748974	6824476	0	-	0.526316	(0.523,0.58]	chr17	689919	10	UTR5	UTR5:EXON_MRNA:INTRON	GEMIN4	ENSG00000179409.11	ENST00000319004.6:ENST00000576778.1:ENST00000437269.1:ENST00000573482.5:ENST00000570364.5:ENST00000576383.1:ENST00000574958.1	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.47382	5.96424	6.45466	0.0244797	2.45921e-4	0.106683	0.00524396
chr11	57303385	57303479	5038250	0	-	0.617021	(0.58,1]	chr11	488041	7	EXON_MRNA	EXON_MRNA:INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1:ENST00000427750.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	92	2	5.83375	5.964125	6.0945	0.00751249	3.47472e-4	0.0576451	0.00673552
chr2	239394780	239394880	1392660	0	-	0.47	(0.45,0.485]	chr2	148759	415	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	347	2	4.49709	5.963985	7.43088	8.47151e-4	8.7936e-5	0.0173017	0.00248329
chr12	76068577	76068659	5455902	0	-	0.378049	(0.36,0.39]	chr12	536730	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	224	2	5.20429	5.9639050000000005	6.72352	0.00411221	1.12605e-4	0.0414433	0.00299328
chr3	65737829	65737929	1812853	0	-	0.45	(0.419,0.45]	chr3	187296	173	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	98	2	5.88044	5.96384	6.04724	0.0192645	0.00142238	0.0954446	0.0181715
chr11	63901633	63901697	4867445	0	+	0.4375	(0.419,0.45]	chr11	466825	2	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000677688.1:ENST00000509502.6:ENST00000408948.7:ENST00000676602.1:ENST00000678482.1:ENST00000678662.1:ENST00000679321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	100	2	5.75936	5.96374	6.16812	0.0123115	0.00285253	0.0756356	0.0294017
chr3	113126352	113126451	1538488	0	+	0.454545	(0.45,0.485]	chr3	163247	160	INTRON	INTRON	NEPRO-AS1	ENSG00000240057.7	ENST00000655310.1:ENST00000686071.1:ENST00000496389.5	lncRNA	lncRNA	lncRNA	lncRNA	0	97	2	5.86106	5.963375	6.06569	0.0104281	0.00153611	0.0687558	0.0191553
chr20	25495669	25495768	7539910	0	-	0.585859	(0.58,1]	chr20	787018	38	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5:ENST00000461642.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	92	2	5.8019	5.96317	6.12444	0.007984	3.17437e-4	0.0596361	0.00632787
chr1	48228349	48228449	120983	0	+	0.65	(0.58,1]	chr1	15166	1	SS3_PROX	SS3_PROX:INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	92	2	5.92528	5.963035	6.00079	0.0062948	4.59827e-4	0.0523832	0.00821903
chr21	46353656	46353741	7632491	0	+	0.611765	(0.58,1]	chr21	798130	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PCNT	ENSG00000160299.18	ENST00000466474.6:ENST00000695525.1:ENST00000695558.1:ENST00000359568.10:ENST00000695526.1:ENST00000480896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	92	2	5.92528	5.963035	6.00079	0.0062948	4.59827e-4	0.0523832	0.00821903
chr20	64269302	64269401	7511205	0	+	0.535354	(0.523,0.58]	chr20	783907	9	INTRON	INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609818.1	protein_coding	protein_coding	protein_coding	protein_coding	0	128	2	4.90222	5.96294	7.02366	0.0125132	0.00155872	0.0765738	0.0243306
chr1	3469993	3470093	5808	0	+	0.63	(0.58,1]	chr1	1228	4	SS5_PROX	SS5_PROX:INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.50497	5.962875	6.42078	0.00230938	0.00187297	0.0302623	0.0219434
chr16	85232565	85232665	6515394	0	+	0.66	(0.58,1]	chr16	646377	48	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	99	2	5.50497	5.962875	6.42078	0.00230938	0.00187297	0.0302623	0.0219434
chr12	123654523	123654623	5347076	0	+	0.45	(0.419,0.45]	chr12	522779	2	SS3_PROX	SS3_PROX:INTRON	GTF2H3	ENSG00000111358.14	ENST00000618160.4:ENST00000542279.5:ENST00000543341.7:ENST00000228955.11:ENST00000538845.5:ENST00000539994.5:ENST00000537695.5:ENST00000536375.5:ENST00000543415.5:ENST00000538533.5:ENST00000543154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	101	2	5.52073	5.96284	6.40495	0.0327198	5.72149e-4	0.122543	0.00960229
chr15	101360617	101360717	6363145	0	-	0.66	(0.58,1]	chr15	627205	42	INTRON	INTRON	PCSK6	ENSG00000140479.18	ENST00000677364.1:ENST00000676598.1:ENST00000558951.5:ENST00000398185.6:ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000679007.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000559605.1:ENST00000560902.5:ENST00000611967.4:ENST00000615296.4:ENST00000676494.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	94	2	5.75506	5.962255000000001	6.16945	0.00387582	9.38062e-4	0.0401256	0.0135546
chr9	129619416	129619516	4251025	0	+	0.45	(0.419,0.45]	chr9	404743	99	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.66212	5.962235	6.26235	0.0266819	8.27298e-4	0.111563	0.0124589
chr20	8614577	8614677	7431415	0	+	0.42	(0.419,0.45]	chr20	773703	134	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2:ENST00000628900.1:ENST00000626966.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	101	2	5.68676	5.962154999999999	6.23755	0.0110181	0.00338051	0.0708586	0.0328791
chr13	33865320	33865420	5567102	0	+	0.48	(0.45,0.485]	chr13	549341	146	INTRON	INTRON	RFC3	ENSG00000133119.13	ENST00000434425.5:ENST00000616236.1	protein_coding	protein_coding	protein_coding	protein_coding	0	100	2	5.6428	5.96205	6.2813	0.00719875	0.00265386	0.056408	0.027979
chr17	1362605	1362702	6829151	0	-	0.484536	(0.45,0.485]	chr17	690322	2	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	100	2	5.6428	5.96205	6.2813	0.00719875	0.00265386	0.056408	0.027979
chr18	62827935	62828035	7081163	0	+	0.4	(0.39,0.419]	chr18	721972	480	INTRON	INTRON	PHLPP1	ENSG00000081913.14	ENST00000262719.10:ENST00000497351.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	294	2	4.48645	5.961845	7.43724	0.00115704	2.38705e-4	0.0205679	0.00514561
chr16	12170216	12170316	6391570	0	+	0.57	(0.523,0.58]	chr16	631959	346	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	97	2	5.5868	5.961790000000001	6.33678	0.020474	3.44853e-4	0.0979776	0.00672121
chr9	129499941	129500039	4250776	0	+	0.561224	(0.523,0.58]	chr9	404726	11	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	97	2	5.5868	5.961790000000001	6.33678	0.020474	3.44853e-4	0.0979776	0.00672121
chr3	71416558	71416658	1829614	0	-	0.49	(0.485,0.523]	chr3	188242	559	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000649145.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	96	2	5.87431	5.96133	6.04835	0.00941539	0.00127835	0.0653252	0.0168904
chr17	643693	643792	6823613	0	-	0.434343	(0.419,0.45]	chr17	689804	105	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000680944.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000681830.1:ENST00000679959.1:ENST00000680114.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000570650.2:ENST00000679680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	98	2	5.79088	5.961295	6.13171	0.022052	0.00115219	0.101502	0.0157112
chr13	112526244	112526342	5752175	0	-	0.469388	(0.45,0.485]	chr13	563913	34	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000462580.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	96	2	5.84258	5.96124	6.0799	0.0151085	8.68466e-4	0.0841543	0.0128564
chr22	25164923	25165022	7700684	0	+	0.474747	(0.45,0.485]	chr22	805914	521	INTRON	INTRON	KIAA1671	ENSG00000197077.14	ENST00000358431.8:ENST00000406486.8:ENST00000494730.2:ENST00000401395.1:ENST00000637069.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	96	2	5.90167	5.961180000000001	6.02069	0.0137135	0.00101549	0.0799457	0.0143256
chr6	601619	601719	3078176	0	-	0.53	(0.523,0.58]	chr6	299385	20	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.51247	5.96056	6.40865	0.0230387	2.80789e-4	0.102982	0.00578259
chr20	64271084	64271183	7511223	0	+	0.474747	(0.45,0.485]	chr20	783907	27	INTRON	INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609818.1	protein_coding	protein_coding	protein_coding	protein_coding	0	144	2	4.67139	5.960405	7.24942	0.0223378	0.0012056600000000001	0.108193	0.0210584
chr7	66662482	66662581	3382029	0	+	0.565657	(0.523,0.58]	chr7	326325	75	INTRON	INTRON	ENSG00000226824	ENSG00000226824.8	ENST00000693151.1:ENST00000656515.2:ENST00000448096.1:ENST00000439360.5:ENST00000657342.1:ENST00000428557.1	lncRNA	lncRNA	lncRNA	lncRNA	2	279	2	4.69733	5.9603	7.22327	0.00105256	8.05902e-5	0.0194688	0.00233145
chr1	111726673	111726771	561665	0	-	0.540816	(0.523,0.58]	chr1	64439	37	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	INKA2	ENSG00000197852.12	ENST00000527570.1:ENST00000357260.6:ENST00000534365.1:ENST00000444059.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	216	2	4.52171	5.960145	7.39858	7.41711e-4	5.43906e-4	0.0160724	0.00927567
chr4	94543811	94543910	2088583	0	+	0.363636	(0.36,0.39]	chr4	212909	196	INTRON	INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000318007.9:ENST00000380180.7:ENST00000514830.5:ENST00000509333.5:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000508216.5:ENST00000511767.3:ENST00000510099.5:ENST00000509357.5:ENST00000513341.5:ENST00000508531.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	100	2	5.69574	5.9598700000000004	6.224	0.00967792	0.00299965	0.0661428	0.030427
chr10	44968864	44968964	4483217	0	+	0.58	(0.523,0.58]	chr10	428600	86	INTRON	INTRON	RASSF4	ENSG00000107551.21	ENST00000489171.5:ENST00000340258.10:ENST00000427758.5:ENST00000483709.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	98	2	5.69834	5.959804999999999	6.22127	0.00699217	0.00194036	0.0555241	0.0225083
chr2	7039128	7039228	712663	0	+	0.45	(0.419,0.45]	chr2	83317	1	SS3_PROX	SS3_PROX:INTRON	RNF144A	ENSG00000151692.15	ENST00000320892.11:ENST00000467276.5:ENST00000432850.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	104	2	5.36395	5.9596	6.55525	0.0407485	3.84925e-4	0.135868	0.00726694
chr10	103702307	103702407	4757123	0	-	0.44	(0.419,0.45]	chr10	454791	88	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	271	2	4.52253	5.959474999999999	7.39642	0.0050681500000000004	3.70422e-5	0.0465789	0.00131524
chr19	3528314	3528412	7191581	0	+	0.622449	(0.58,1]	chr19	732249	1	INTRON	INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	95	2	5.67642	5.959435	6.24245	0.00334087	0.00117039	0.0368376	0.0157899
chr4	6299957	6300056	2010601	0	+	0.666667	(0.58,1]	chr4	205141	44	INTRON	INTRON	WFS1	ENSG00000109501.15	ENST00000673991.1:ENST00000503569.5:ENST00000226760.5:ENST00000682275.1:ENST00000506362.2:ENST00000684087.1:ENST00000683395.1:ENST00000673642.1:ENST00000507765.1:ENST00000513395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	95	2	5.67642	5.959435	6.24245	0.00334087	0.00117039	0.0368376	0.0157899
chr1	198179774	198179874	310764	0	+	0.44	(0.419,0.45]	chr1	35119	221	INTRON	INTRON	NEK7	ENSG00000151414.15	ENST00000442588.5:ENST00000367385.9:ENST00000538004.5:ENST00000367383.5	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.75975	5.959275	6.1588	0.0231013	0.00107628	0.102982	0.0148869
chr13	112552460	112552560	5752444	0	-	0.47	(0.45,0.485]	chr13	563939	39	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000464139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	96	2	5.95844	5.958690000000001	5.95894	0.0124835	0.00119342	0.0761905	0.016037
chr14	105215186	105215284	6058149	0	-	0.479592	(0.45,0.485]	chr14	594783	19	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000392557.8:ENST00000446501.6:ENST00000635152.1:ENST00000547374.5:ENST00000551787.5:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	212	2	5.04227	5.958575	6.87488	0.00245783	1.38139e-4	0.0312836	0.00347303
chr6	10817090	10817190	2851803	0	+	0.38	(0.36,0.39]	chr6	278842	147	INTRON	INTRON	TMEM14B	ENSG00000137210.14	ENST00000463448.5:ENST00000473166.5:ENST00000460341.5:ENST00000463100.5:ENST00000467229.1:ENST00000489137.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	97	2	5.86038	5.9583200000000005	6.05626	0.0174081	0.00124043	0.0901374	0.0165207
chr3	111752187	111752287	1534472	0	+	0.44	(0.419,0.45]	chr3	162941	191	INTRON	INTRON	PLCXD2:PHLDB2	ENSG00000240891.8:ENSG00000144824.21	ENST00000393934.7:ENST00000477665.2:ENST00000474484.1:ENST00000393923.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	105	2	5.48746	5.957635	6.42781	0.0080847	0.00532156	0.0602118	0.0446153
chr4	150470829	150470927	2344764	0	-	0.44898	(0.419,0.45]	chr4	234698	27	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000503716.5:ENST00000509835.5:ENST00000648823.1:ENST00000648626.1:ENST00000651695.1:ENST00000648878.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	100	2	5.72351	5.957575	6.19164	0.0118587	0.00310292	0.0740271	0.0311614
chr15	85685446	85685544	6179284	0	+	0.489796	(0.485,0.523]	chr15	607655	1	INTRON	INTRON	AKAP13	ENSG00000170776.22	ENST00000394518.7:ENST00000361243.6:ENST00000560676.5:ENST00000394510.6:ENST00000560579.5:ENST00000612418.1	protein_coding	protein_coding	protein_coding	protein_coding	0	96	2	5.84014	5.957285000000001	6.07443	0.00899749	0.00139792	0.0637469	0.0179863
chr5	66181241	66181340	2439384	0	+	0.515152	(0.485,0.523]	chr5	242966	25	UTR3	UTR3:EXON_MRNA	SREK1	ENSG00000153914.16	ENST00000334121.11	protein_coding	protein_coding	protein_coding	protein_coding	0	95	2	5.9104	5.956905	6.00341	0.0119344	9.07333e-4	0.0741726	0.0132726
chr22	32767336	32767436	7792332	0	-	0.41	(0.39,0.419]	chr22	817442	1371	INTRON	INTRON	SYN3	ENSG00000185666.15	ENST00000358763.7:ENST00000462268.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	102	2	5.41254	5.956885	6.50123	0.0347088	3.91245e-4	0.12648	0.00735482
chr9	114204201	114204301	4226194	0	+	0.5	(0.485,0.523]	chr9	400776	78	INTRON	INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8:ENST00000451716.5:ENST00000494090.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	108	2	5.12092	5.956555	6.79219	0.0414411	9.60927e-5	0.136301	0.00264781
chr17	5373659	5373758	6844016	0	-	0.484848	(0.45,0.485]	chr17	692874	112	INTRON	INTRON	NUP88	ENSG00000108559.12	ENST00000573169.1:ENST00000576708.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	96	2	5.92705	5.956530000000001	5.98601	0.0119228	0.00129636	0.0741726	0.0170746
chr3	195112253	195112353	1981133	0	-	0.55	(0.523,0.58]	chr3	201655	182	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000437101.5:ENST00000473200.1:ENST00000429994.5:ENST00000356740.5:ENST00000418940.5:ENST00000491138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	102	2	5.30795	5.95648	6.60501	0.0315825	1.58554e-4	0.120781	0.00384084
chr3	15777854	15777954	1697996	0	-	0.5	(0.485,0.523]	chr3	177556	112	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	218	2	4.47284	5.956275	7.43971	6.75881e-4	6.43746e-4	0.0153083	0.0104271
chr21	44865814	44865896	7678499	0	-	0.621951	(0.58,1]	chr21	802771	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000474737.5:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	638	2	5.02372	5.956075	6.88843	9.94577e-5	2.76213e-5	0.00558693	0.00106056
chr2	160463929	160464029	1293190	0	-	0.29	[0,0.29]	chr2	138809	311	INTRON	INTRON	RBMS1	ENSG00000153250.21	ENST00000348849.8:ENST00000474820.5:ENST00000491781.5:ENST00000477486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	93	2	5.8887	5.955935	6.02317	0.00739414	6.82173e-4	0.0573244	0.0108717
chr10	103718478	103718578	4757285	0	-	0.67	(0.58,1]	chr10	454791	250	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	93	2	5.79283	5.9557400000000005	6.11865	0.00429384	8.4246e-4	0.042386	0.0125912
chr19	36214321	36214421	7367438	0	-	0.59	(0.58,1]	chr19	763877	3	SS5_PROX	SS5_PROX:INTRON	ZNF565	ENSG00000196357.12	ENST00000304116.10:ENST00000355114.9:ENST00000392173.6:ENST00000591473.1:ENST00000587803.1:ENST00000586648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	93	2	5.79283	5.9557400000000005	6.11865	0.00429384	8.4246e-4	0.042386	0.0125912
chr5	138511382	138511474	2769573	0	-	0.413043	(0.39,0.419]	chr5	271791	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ETF1	ENSG00000120705.13	ENST00000360541.10:ENST00000499810.6:ENST00000503014.5:ENST00000506345.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	97	2	5.7987	5.95563	6.11256	0.0195328	0.00108325	0.0955413	0.0149525
chr8	22200252	22200343	3769783	0	+	0.538462	(0.523,0.58]	chr8	362645	5	INTRON	INTRON	BMP1	ENSG00000168487.20	ENST00000354870.5:ENST00000520970.5:ENST00000518913.5:ENST00000520626.6:ENST00000520982.5:ENST00000306385.10:ENST00000306349.13:ENST00000471755.5:ENST00000483364.5:ENST00000521385.5:ENST00000522332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	95	2	5.75742	5.955545	6.15367	0.0155135	5.76607e-4	0.0849828	0.00963379
chr21	45454122	45454222	7630804	0	+	0.55	(0.523,0.58]	chr21	797656	483	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	95	2	5.94389	5.955315	5.96674	0.0109075	0.0010207	0.0707085	0.0143498
chr1	50959571	50959671	479732	0	-	0.44	(0.419,0.45]	chr1	56836	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	221	2	4.95738	5.95527	6.95316	0.00331448	2.52452e-4	0.0368376	0.00536078
chr10	18552271	18552371	4642251	0	-	0.38	(0.36,0.39]	chr10	443320	3	SS3_PROX	SS3_PROX:INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.73251	5.95492	6.17733	0.0104543	0.0027486	0.0688771	0.028553
chr20	8492338	8492438	7430191	0	+	0.33	(0.29,0.33]	chr20	773698	1203	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	97	2	5.55737	5.95475	6.35213	0.0196268	3.72808e-4	0.095549	0.00708918
chr2	235504241	235504340	1062638	0	+	0.494949	(0.485,0.523]	chr2	115651	90	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	340	2	3.9513	5.9540500000000005	7.9568	4.02392e-4	2.34053e-4	0.00863036	0.0075037
chr9	131429289	131429389	4257969	0	+	0.47	(0.45,0.485]	chr9	405607	347	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000682525.1:ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	0	103	2	5.29973	5.954025	6.60832	0.035042	2.02062e-4	0.12704	0.00457229
chr15	30754130	30754229	6072102	0	+	0.414141	(0.39,0.419]	chr15	596560	32	INTRON	INTRON	ENSG00000284906:ENSG00000187951:ENSG00000284783	ENSG00000284906.3:ENSG00000187951.11:ENSG00000284783.2	ENST00000685924.1:ENST00000602616.6:ENST00000562954.1:ENST00000646742.2	protein_coding	protein_coding	protein_coding:lncRNA:transcribed_unprocessed_pseudogene	protein_coding:lncRNA:transcribed_unprocessed_pseudogene	0	99	2	5.73194	5.9539550000000006	6.17597	0.0107103	0.00276973	0.0701493	0.0286873
chr5	648515	648614	2378767	0	+	0.565657	(0.523,0.58]	chr5	237646	2	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	253	2	4.25009	5.9539550000000006	7.65782	0.00583753	6.02213e-6	0.0505443	3.58754e-4
chr2	11311718	11311818	1089072	0	-	0.41	(0.39,0.419]	chr2	118747	236	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	219	2	4.71796	5.953799999999999	7.18964	0.00182908	4.4925e-4	0.0266451	0.00812774
chr11	16948581	16948681	5011054	0	-	0.5	(0.485,0.523]	chr11	484333	352	INTRON	INTRON	PLEKHA7	ENSG00000166689.17	ENST00000531066.6:ENST00000355661.7:ENST00000532079.1:ENST00000529213.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	97	2	5.73251	5.953385000000001	6.17426	0.00754939	0.00184599	0.0578091	0.0217471
chr20	44360441	44360541	7482512	0	+	0.41	(0.39,0.419]	chr20	779618	42	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5	protein_coding	protein_coding	protein_coding	protein_coding	2	591	2	5.64542	5.952965	6.26051	5.55701e-4	4.74973e-6	0.0137234	3.04233e-4
chr3	71105754	71105854	1826474	0	-	0.41	(0.39,0.419]	chr3	188132	105	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000475937.6:ENST00000327590.9:ENST00000648426.1:ENST00000497355.7:ENST00000648748.3:ENST00000649695.3:ENST00000498215.7:ENST00000484350.5:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000491238.8:ENST00000648384.1:ENST00000648380.1:ENST00000650188.1:ENST00000650068.2:ENST00000468577.6:ENST00000649592.1:ENST00000648794.2:ENST00000649513.1:ENST00000649431.2:ENST00000647614.1:ENST00000472382.7:ENST00000649760.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	98	2	5.80276	5.95289	6.10302	0.0120635	0.00233691	0.0745226	0.0257208
chr9	134337638	134337737	4260799	0	+	0.525253	(0.523,0.58]	chr9	406311	106	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	95	2	5.91127	5.95279	5.99431	0.0104033	0.00111349	0.0686837	0.0152496
chr16	81681019	81681119	6510121	0	+	0.7	(0.58,1]	chr16	645979	20	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	0	96	2	5.59324	5.952585	6.31193	0.00289626	0.0014734	0.03418	0.0185589
chr9	134341829	134341929	4260841	0	+	0.67	(0.58,1]	chr9	406311	148	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	96	2	5.59324	5.952585	6.31193	0.00289626	0.0014734	0.03418	0.0185589
chr1	52448961	52449061	484147	0	-	0.37	(0.36,0.39]	chr1	57516	19	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000469810.1:ENST00000528642.5:ENST00000497120.1:ENST00000484723.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	100	2	5.65802	5.952394999999999	6.24677	0.00931845	0.003279	0.0649153	0.0322062
chr22	31624897	31624988	7788314	0	-	0.637363	(0.58,1]	chr22	817184	7	INTRON	INTRON	PISD	ENSG00000241878.12	ENST00000460723.5:ENST00000439502.7:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5:ENST00000474017.5:ENST00000478893.5:ENST00000491342.1:ENST00000422020.5:ENST00000442379.1:ENST00000429683.1:ENST00000431201.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	194	2	4.7449	5.952145	7.15939	4.60046e-4	1.74253e-4	0.0123493	0.00410754
chr16	66688544	66688644	6605593	0	-	0.45	(0.419,0.45]	chr16	660577	516	INTRON	INTRON	CMTM4	ENSG00000183723.13	ENST00000394106.7:ENST00000330687.8:ENST00000563952.1	protein_coding	protein_coding	protein_coding	protein_coding	0	107	2	5.39934	5.952135	6.50493	0.00711588	0.00646489	0.0560048	0.0503748
chr19	36213938	36214029	7367434	0	-	0.538462	(0.523,0.58]	chr19	763876	7	INTRON	INTRON	ZNF565	ENSG00000196357.12	ENST00000304116.10:ENST00000355114.9:ENST00000392173.6:ENST00000591473.1:ENST00000587803.1:ENST00000586648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	98	2	5.65959	5.952005	6.24442	0.00670944	0.0021416	0.0541591	0.0240825
chr11	57500678	57500778	5038780	0	-	0.67	(0.58,1]	chr11	488209	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	351	2	4.31329	5.951980000000001	7.59067	1.70527e-4	4.35688e-5	0.00729818	0.00149008
chr19	32485401	32485499	7239744	0	+	0.438776	(0.419,0.45]	chr19	741190	33	UTR3	UTR3:EXON_MRNA	DPY19L3	ENSG00000178904.19	ENST00000392250.7:ENST00000586987.5:ENST00000342179.9:ENST00000592142.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	269	2	4.35488	5.951219999999999	7.54756	0.00678408	2.38821e-5	0.0546626	9.56571e-4
chr17	17591130	17591230	6865588	0	-	0.49	(0.485,0.523]	chr17	695837	2	SS5_PROX	SS5_PROX:INTRON	PEMT	ENSG00000133027.18	ENST00000255389.10:ENST00000435340.6:ENST00000395781.6:ENST00000580147.5:ENST00000421096.5:ENST00000472446.1:ENST00000461404.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	95	2	5.90769	5.9512149999999995	5.99474	0.0103305	0.0011708	0.0684871	0.0157899
chr11	64306403	64306491	4868817	0	+	0.625	(0.58,1]	chr11	467348	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ESRRA	ENSG00000173153.17	ENST00000406310.6:ENST00000000442.11:ENST00000677967.1:ENST00000539594.5:ENST00000405666.5:ENST00000468670.2	protein_coding	protein_coding	protein_coding	protein_coding	1	191	2	5.04993	5.951205	6.85248	9.12934e-4	6.39597e-5	0.0180377	0.00196197
chr21	35942260	35942360	7666386	0	-	0.48	(0.45,0.485]	chr21	801118	774	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000475045.6	protein_coding	protein_coding	protein_coding	protein_coding	0	118	2	5.0722	5.9510749999999994	6.82995	0.00988295	0.00267274	0.0664239	0.0327654
chr7	32982940	32983039	3342512	0	+	0.454545	(0.45,0.485]	chr7	323499	20	INTRON	INTRON	FKBP9	ENSG00000122642.11	ENST00000538336.5:ENST00000494374.5:ENST00000242209.9:ENST00000472007.5:ENST00000489038.5:ENST00000490776.3:ENST00000418354.5:ENST00000463443.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	118	2	5.0722	5.9510749999999994	6.82995	0.00988295	0.00267274	0.0664239	0.0327654
chr7	6702585	6702684	3542739	0	-	0.474747	(0.45,0.485]	chr7	342318	18	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.6428	5.950835	6.25887	0.00748565	0.00265386	0.0576451	0.027979
chr12	1119427	1119527	5151563	0	+	0.43	(0.419,0.45]	chr12	500816	30	INTRON	INTRON	ERC1	ENSG00000082805.21	ENST00000611180.5:ENST00000543086.7:ENST00000360905.9:ENST00000691018.1:ENST00000690948.1:ENST00000542302.6:ENST00000546231.6:ENST00000545318.3:ENST00000347735.10:ENST00000397203.7:ENST00000536573.7:ENST00000690222.1:ENST00000686476.1:ENST00000692909.1:ENST00000440394.7:ENST00000545948.5:ENST00000589028.6:ENST00000355446.9:ENST00000538971.6:ENST00000689995.1:ENST00000688324.1:ENST00000541503.1:ENST00000691177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	100	2	5.68676	5.95077	6.21478	0.011428	0.00338051	0.0723462	0.0328791
chr16	85231665	85231765	6515385	0	+	0.48	(0.45,0.485]	chr16	646377	39	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	107	2	5.33781	5.950585	6.56336	0.0054758	0.00436001	0.0454065	0.0427656
chr2	158590242	158590341	936296	0	+	0.393939	(0.39,0.419]	chr2	103407	14	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000421462.5:ENST00000462335.1:ENST00000481115.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	271	2	4.77033	5.95012	7.12991	0.00291327	6.78033e-5	0.0342042	0.00205103
chr16	15065017	15065117	6404123	0	+	0.64	(0.58,1]	chr16	632853	268	INTRON	INTRON	PDXDC1	ENSG00000179889.20	ENST00000535621.6	protein_coding	protein_coding	protein_coding	protein_coding	0	93	2	5.75506	5.9496649999999995	6.14427	0.00407804	9.38062e-4	0.0413652	0.0135546
chr17	80892969	80893048	6812406	0	+	0.56962	(0.523,0.58]	chr17	687924	1	SS5_PROX	SS5_PROX:INTRON	RPTOR	ENSG00000141564.15	ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	96	2	5.5868	5.949400000000001	6.312	0.020474	3.69994e-4	0.0979776	0.00704866
chr21	15808508	15808608	7591901	0	+	0.27	[0,0.29]	chr21	793756	3	SS3_PROX	SS3_PROX:INTRON	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9:ENST00000547201.5:ENST00000549362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	93	2	5.89403	5.94933	6.00463	0.00592026	9.73966e-4	0.0506158	0.0139544
chr14	91221248	91221344	5899569	0	+	0.53125	(0.523,0.58]	chr14	576435	6	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	209	2	5.204	5.949225	6.69445	0.00293287	7.00257e-5	0.0343709	0.00210498
chr3	188269550	188269650	1652954	0	+	0.33	(0.29,0.33]	chr3	173754	290	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	0	95	2	5.69884	5.94912	6.1994	0.0155382	5.69534e-4	0.0849828	0.00958234
chr19	5814907	5815007	7195535	0	+	0.58	(0.523,0.58]	chr19	733105	91	INTRON	INTRON	NRTN	ENSG00000171119.3	ENST00000303212.3	protein_coding	protein_coding	protein_coding	protein_coding	0	96	2	5.77287	5.948825	6.12478	0.00829271	0.00160162	0.0610772	0.0197827
chr17	7109288	7109388	6847726	0	-	0.58	(0.523,0.58]	chr17	693422	4	SS3_PROX	SS3_PROX:INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	870	2	5.78235	5.9488	6.11525	1.34261e-4	1.03975e-6	0.00644193	1.06998e-4
chr11	3702262	3702362	4974180	0	-	0.48	(0.45,0.485]	chr11	481601	4	SS5_PROX	SS5_PROX:INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000429801.5:ENST00000529063.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	97	2	5.75605	5.94862	6.14119	0.00917101	0.002004	0.064285	0.0230381
chr3	67717176	67717276	1498924	0	+	0.49	(0.485,0.523]	chr3	160601	231	INTRON	INTRON	SUCLG2-DT	ENSG00000241316.8	ENST00000665078.1:ENST00000464420.6:ENST00000659899.1:ENST00000659205.1:ENST00000671174.1:ENST00000659329.1:ENST00000662687.1:ENST00000482677.5:ENST00000658269.1:ENST00000656446.1:ENST00000650236.1:ENST00000496640.2	lncRNA	lncRNA	lncRNA	lncRNA	0	95	2	5.692	5.9483999999999995	6.2048	0.0171772	5.23665e-4	0.0895975	0.0090184
chr2	239372201	239372300	1392434	0	-	0.626263	(0.58,1]	chr2	148759	189	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	92	2	5.63118	5.948309999999999	6.26544	0.0109983	2.06156e-4	0.0708586	0.00461335
chr5	82305981	82306080	2474440	0	+	0.373737	(0.36,0.39]	chr5	246858	1	INTRON	INTRON	ATP6AP1L	ENSG00000205464.13	ENST00000380167.8:ENST00000643922.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	0	99	2	5.69574	5.948295	6.20085	0.0100561	0.00299965	0.0677306	0.030427
chr8	17946785	17946885	3764688	0	+	0.48	(0.45,0.485]	chr8	361648	2	SS3_PROX	SS3_PROX:INTRON	PCM1	ENSG00000078674.19	ENST00000518930.1:ENST00000325083.13:ENST00000517730.5:ENST00000518537.5:ENST00000523055.5:ENST00000519253.5:ENST00000524226.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	257	2	4.66135	5.948015	7.23468	0.00296361	3.17326e-5	0.0346628	0.00117335
chr12	69498736	69498835	5260927	0	+	0.50505	(0.485,0.523]	chr12	513023	67	INTRON	INTRON	FRS2	ENSG00000166225.9	ENST00000547219.5:ENST00000550316.5:ENST00000547414.5:ENST00000548154.5:ENST00000549921.6:ENST00000550389.5:ENST00000550937.5:ENST00000549092.5:ENST00000550169.5	protein_coding	protein_coding	protein_coding	protein_coding	0	96	2	5.58723	5.947815	6.3084	0.0203514	3.92049e-4	0.0979211	0.00735595
chr18	79357658	79357757	7099862	0	+	0.636364	(0.58,1]	chr18	722963	91	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000426216.6:ENST00000307671.12:ENST00000490210.6:ENST00000590477.5:ENST00000589951.5:ENST00000588921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	227	2	4.6529	5.947675	7.24245	0.00155479	8.27171e-6	0.0243306	4.48419e-4
chr11	70777257	70777357	5062054	0	-	0.48	(0.45,0.485]	chr11	492701	594	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	275	2	5.02969	5.947605	6.86552	0.00145396	9.58344e-5	0.023422	0.00264329
chr11	112253980	112254080	4942404	0	+	0.43	(0.419,0.45]	chr11	476600	161	INTRON	INTRON	PTS	ENSG00000150787.8	ENST00000531673.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	97	2	5.79088	5.94749	6.1041	0.022052	0.00123471	0.101502	0.0164614
chr10	79165728	79165828	4533014	0	+	0.65	(0.58,1]	chr10	432438	32	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	94	2	5.67642	5.94747	6.21852	0.00350812	0.00117039	0.0379357	0.0157899
chr11	95876777	95876877	5109396	0	-	0.43	(0.419,0.45]	chr11	496476	99	INTRON	INTRON	MTMR2	ENSG00000087053.20	ENST00000675896.1:ENST00000346299.10:ENST00000675495.1:ENST00000676272.1:ENST00000675910.1:ENST00000393223.8:ENST00000676177.1:ENST00000675022.1:ENST00000675362.1:ENST00000674974.1:ENST00000675320.1:ENST00000675174.1:ENST00000674950.1:ENST00000674989.1:ENST00000675030.1:ENST00000676388.1:ENST00000675848.1:ENST00000675652.1:ENST00000676146.1:ENST00000675922.1:ENST00000676268.1:ENST00000675024.1:ENST00000675767.1:ENST00000676432.1:ENST00000676027.1:ENST00000675196.1:ENST00000675957.1:ENST00000675981.1:ENST00000674924.1:ENST00000676166.1:ENST00000676440.1:ENST00000675454.1:ENST00000674968.1:ENST00000676378.1:ENST00000675288.1:ENST00000675636.1:ENST00000675237.1:ENST00000674528.1:ENST00000675477.1:ENST00000674901.1:ENST00000675034.1:ENST00000676393.1:ENST00000675413.1:ENST00000675933.1:ENST00000675660.1:ENST00000674610.1:ENST00000409459.5:ENST00000352297.11:ENST00000675807.1:ENST00000675489.1:ENST00000676261.1:ENST00000481642.6:ENST00000495134.6:ENST00000484818.6:ENST00000470293.6:ENST00000497683.6:ENST00000444541.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	97	2	5.93719	5.94735	5.95751	0.0176643	0.0017735	0.0909046	0.02121
chr1	31334286	31334386	79699	0	+	0.51	(0.485,0.523]	chr1	9104	148	INTRON	INTRON	ZCCHC17	ENSG00000121766.16	ENST00000618216.4:ENST00000546109.5:ENST00000616393.4:ENST00000616859.4:ENST00000615916.4:ENST00000479629.5:ENST00000373714.5:ENST00000344147.10:ENST00000627541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	96	2	5.76929	5.94725	6.12521	0.00823189	0.00167976	0.0608959	0.0203806
chr22	20125112	20125209	7686894	0	+	0.494845	(0.485,0.523]	chr22	804214	11	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000331821.7:ENST00000411892.5:ENST00000423859.5:ENST00000418705.2:ENST00000448394.2:ENST00000486575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	96	2	5.76929	5.94725	6.12521	0.00823189	0.00167976	0.0608959	0.0203806
chr6	158342966	158343066	3061951	0	+	0.56	(0.523,0.58]	chr6	297592	283	INTRON	INTRON	ENSG00000274023:TULP4	ENSG00000274023.1:ENSG00000130338.13	ENST00000619713.1:ENST00000367097.8:ENST00000367094.6:ENST00000616856.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	1	252	2	4.69548	5.947045	7.19861	0.00248377	2.60365e-5	0.0315244	0.00101533
chr11	68350523	68350621	4882463	0	+	0.663265	(0.58,1]	chr11	470548	19	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	100	2	5.41094	5.946645	6.48235	0.00240622	0.00202884	0.0283135	0.0261006
chr20	62922156	62922256	7585556	0	-	0.31	(0.29,0.33]	chr20	792927	74	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8	protein_coding	protein_coding	protein_coding	protein_coding	1	212	2	4.58332	5.946645	7.30997	7.49901e-4	4.90571e-4	0.0161713	0.00862536
chr7	158920043	158920140	3523191	0	+	0.618557	(0.58,1]	chr7	340299	8	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	100	2	5.41094	5.946645	6.48235	0.00240622	0.00202884	0.0283135	0.0261006
chr7	1849054	1849154	3528712	0	-	0.5	(0.485,0.523]	chr7	340944	195	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000481633.1:ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000450235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	97	2	5.69477	5.94647	6.19817	0.00723584	0.00203227	0.0565323	0.0232814
chr4	26361060	26361159	2023422	0	+	0.474747	(0.45,0.485]	chr4	206772	9	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5:ENST00000515573.5:ENST00000689192.1:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2:ENST00000511546.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	96	2	5.8269	5.946295	6.06569	0.0104281	0.00167585	0.0687558	0.0203806
chr1	113472635	113472735	212016	0	+	0.36	(0.33,0.36]	chr1	23359	683	INTRON	INTRON	MAGI3	ENSG00000081026.19	ENST00000307546.14:ENST00000369617.8:ENST00000369615.5:ENST00000369611.4:ENST00000486456.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	96	2	5.88143	5.94614	6.01085	0.011821	0.00169367	0.0739406	0.0204799
chr19	1997663	1997763	7307770	0	-	0.66	(0.58,1]	chr19	753492	2	SS3_PROX	SS3_PROX:INTRON	BTBD2	ENSG00000133243.10	ENST00000255608.9:ENST00000589200.3:ENST00000590646.5:ENST00000587742.5:ENST00000588395.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	193	2	5.2395	5.946104999999999	6.65271	0.00141059	3.37223e-5	0.0229261	0.0012296
chr19	6719687	6719780	7322983	0	-	0.537634	(0.523,0.58]	chr19	756565	3	SS3_PROX	SS3_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695652.1:ENST00000594936.2:ENST00000695693.1:ENST00000600744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	250	2	4.61466	5.94609	7.27752	0.00290852	2.03194e-5	0.0342042	8.47843e-4
chr16	72153910	72154010	6620656	0	-	0.47	(0.45,0.485]	chr16	663315	3	SS5_PROX	SS5_PROX:INTRON	PMFBP1	ENSG00000118557.16	ENST00000237353.15:ENST00000537465.5:ENST00000355636.10:ENST00000379073.9:ENST00000535461.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	95	2	5.90167	5.94591	5.99015	0.0137135	0.00110015	0.0799457	0.015136
chr1	78133702	78133801	165145	0	+	0.333333	(0.33,0.36]	chr1	18816	74	INTRON	INTRON	GIPC2	ENSG00000137960.6	ENST00000370759.4	protein_coding	protein_coding	protein_coding	protein_coding	0	100	2	5.59003	5.945595	6.30116	0.00721369	0.00344516	0.0564903	0.0333853
chr1	120795876	120795975	225512	0	+	0.343434	(0.33,0.36]	chr1	24879	20	INTRON	INTRON	NBPF26	ENSG00000273136.8	ENST00000620612.5:ENST00000652763.1:ENST00000651062.1	protein_coding	protein_coding	protein_coding	protein_coding	0	100	2	5.59003	5.945595	6.30116	0.00721369	0.00344516	0.0564903	0.0333853
chr7	29960640	29960739	3564560	0	-	0.444444	(0.419,0.45]	chr7	343990	49	INTRON	INTRON	SCRN1	ENSG00000136193.17	ENST00000426154.5:ENST00000242059.10:ENST00000425819.6:ENST00000409497.5:ENST00000434476.6:ENST00000421434.5:ENST00000494620.1:ENST00000438497.5:ENST00000409570.3:ENST00000631335.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	97	2	5.92632	5.945535	5.96475	0.0169309	0.00191339	0.088829	0.0223437
chr2	200979182	200979281	1355618	0	-	0.262626	[0,0.29]	chr2	144097	56	UTR3	UTR3:EXON_MRNA	FAM126B	ENSG00000155744.10	ENST00000681958.1:ENST00000418596.7:ENST00000286181.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	94	2	5.5878	5.9453949999999995	6.30299	0.0128957	3.07165e-4	0.0773953	0.00618726
chr6	159697056	159697156	3300436	0	-	0.37	(0.36,0.39]	chr6	319519	38	INTRON	INTRON	SOD2	ENSG00000112096.19	ENST00000546087.5:ENST00000545162.5:ENST00000535561.5:ENST00000537657.5:ENST00000401980.3	protein_coding	protein_coding	protein_coding	protein_coding	1	262	2	4.40768	5.94538	7.48308	0.00552499	2.39075e-5	0.0491461	9.56905e-4
chr16	85388336	85388436	6516954	0	+	0.56	(0.523,0.58]	chr16	646391	290	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.5788	5.9452549999999995	6.31171	0.00594629	0.00262418	0.0506158	0.0278348
chr14	54790831	54790930	5821705	0	+	0.444444	(0.419,0.45]	chr14	569165	20	UTR3	UTR3:EXON_MRNA	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9	protein_coding	protein_coding	protein_coding	protein_coding	4	410	2	3.76772	5.945225000000001	8.12273	6.98481e-4	3.94333e-4	0.0113656	0.011049
chr6	158040035	158040135	3059898	0	+	0.45	(0.419,0.45]	chr6	297390	60	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	98	2	5.62805	5.9452	6.26235	0.0280406	8.27298e-4	0.113651	0.0124589
chr7	1938691	1938790	3529611	0	-	0.59596	(0.58,1]	chr7	340962	14	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000450235.5:ENST00000437877.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	91	2	5.73602	5.94489	6.15376	0.00904546	2.90409e-4	0.0637469	0.0059241
chr1	1306871	1306971	380915	0	-	0.6	(0.58,1]	chr1	43019	4	SS5_PROX	SS5_PROX:INTRON	ACAP3	ENSG00000131584.19	ENST00000354700.10:ENST00000472541.5:ENST00000354980.7:ENST00000479108.5:ENST00000438966.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	91	2	5.93474	5.94464	5.95454	0.0059453	5.58693e-4	0.0506158	0.00944382
chr7	143386583	143386680	3510771	0	+	0.628866	(0.58,1]	chr7	338486	20	INTRON	INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	91	2	5.93474	5.94464	5.95454	0.0059453	5.58693e-4	0.0506158	0.00944382
chr17	15465861	15465960	6860093	0	-	0.585859	(0.58,1]	chr17	695067	124	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	190	2	5.00585	5.944545	6.88324	8.53086e-4	7.40898e-5	0.0173632	0.00219184
chr15	56178160	56178259	6274832	0	-	0.383838	(0.36,0.39]	chr15	618428	171	INTRON	INTRON	RFX7	ENSG00000181827.16	ENST00000674082.1:ENST00000559447.8:ENST00000673997.1:ENST00000673948.1:ENST00000560792.4	protein_coding	protein_coding	protein_coding	protein_coding	0	100	2	5.61929	5.9442450000000004	6.2692	0.00897657	0.00359045	0.0637469	0.0342681
chr16	2027618	2027718	6372238	0	+	0.57	(0.523,0.58]	chr16	629167	4	SS5_PROX	SS5_PROX:INTRON	SLC9A3R2	ENSG00000065054.14	ENST00000567504.5:ENST00000424542.7:ENST00000432365.6	protein_coding	protein_coding	protein_coding	protein_coding	0	94	2	5.88072	5.943865000000001	6.00701	0.0126258	8.61362e-4	0.0761905	0.0127848
chr19	7153626	7153726	7323803	0	-	0.52	(0.485,0.523]	chr19	756780	3	INTRON	INTRON	INSR	ENSG00000171105.14	ENST00000341500.9:ENST00000302850.10:ENST00000598216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	99	2	5.57523	5.943685	6.31214	0.00589975	0.00274261	0.0506158	0.028553
chr19	12482165	12482264	7335633	0	-	0.555556	(0.523,0.58]	chr19	758950	150	INTRON	INTRON	ZNF709	ENSG00000242852.7	ENST00000397732.8:ENST00000455490.1	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.61976	5.94348	6.2672	0.00644151	0.00236826	0.0530091	0.0259199
chr20	64269104	64269203	7511203	0	+	0.474747	(0.45,0.485]	chr20	783907	7	INTRON	INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609818.1	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	5.0722	5.943429999999999	6.81466	0.00988295	0.00274987	0.0664239	0.0332418
chr2	201069563	201069663	1356544	0	-	0.41	(0.39,0.419]	chr2	144186	78	INTRON	INTRON	FAM126B	ENSG00000155744.10	ENST00000681958.1:ENST00000418596.7:ENST00000286181.7:ENST00000498780.5:ENST00000452799.5:ENST00000453765.5:ENST00000446678.5:ENST00000474118.5:ENST00000485636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	216	2	4.8981	5.943205000000001	6.98831	0.0026369	2.71905e-4	0.0325876	0.00565445
chr16	8857999	8858089	6546178	0	-	0.577778	(0.523,0.58]	chr16	651452	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CARHSP1	ENSG00000153048.11	ENST00000396593.6:ENST00000611932.4:ENST00000618335.4:ENST00000619881.4:ENST00000610831.4:ENST00000614449.4:ENST00000311052.10:ENST00000561530.5:ENST00000567554.5:ENST00000565287.5:ENST00000567908.5:ENST00000570125.5:ENST00000568117.5:ENST00000568968.1:ENST00000563815.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	208	2	4.66305	5.943160000000001	7.22327	0.00105256	3.60484e-4	0.0194688	0.00694446
chr20	63732019	63732119	7509359	0	+	0.41	(0.39,0.419]	chr20	783515	225	INTRON	INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	999	2	5.78809	5.943005	6.09792	4.21047e-4	8.57658e-7	0.011772	9.48667e-5
chr12	132529184	132529284	5352907	0	+	0.55	(0.523,0.58]	chr12	523670	8	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	94	2	5.90997	5.942885	5.9758	0.012016	9.36996e-4	0.0743424	0.0135546
chr2	239086877	239086967	1389544	0	-	0.566667	(0.523,0.58]	chr2	148609	6	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000487617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	94	2	5.90997	5.942885	5.9758	0.012016	9.36996e-4	0.0743424	0.0135546
chr8	127173490	127173589	4066721	0	-	0.424242	(0.419,0.45]	chr8	387398	40	INTRON	INTRON	CASC19	ENSG00000254166.3	ENST00000642100.1:ENST00000641912.1:ENST00000641421.1:ENST00000641701.1:ENST00000641991.1:ENST00000641588.1:ENST00000642088.1:ENST00000641425.1:ENST00000641706.1:ENST00000641496.1:ENST00000641013.1:ENST00000641262.1:ENST00000641174.1:ENST00000642102.1:ENST00000641615.1:ENST00000641582.1:ENST00000641487.1:ENST00000641321.1:ENST00000641719.1:ENST00000642010.1:ENST00000641578.1:ENST00000641510.1:ENST00000641604.1:ENST00000641056.1:ENST00000641642.1:ENST00000641362.1:ENST00000641365.1:ENST00000642077.1:ENST00000641179.1:ENST00000642126.1:ENST00000641411.1:ENST00000641357.1:ENST00000641746.2:ENST00000641073.1:ENST00000641298.1:ENST00000641001.1:ENST00000641674.2:ENST00000641828.1:ENST00000641029.1:ENST00000641547.1:ENST00000642134.1:ENST00000641696.1:ENST00000641480.1:ENST00000641187.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	219	2	4.7886	5.942845	7.09709	0.00257476	4.02471e-4	0.0321387	0.0075037
chr17	43543579	43543679	6909604	0	-	0.56	(0.523,0.58]	chr17	703272	3	SS5_PROX	SS5_PROX:INTRON	ETV4	ENSG00000175832.13	ENST00000538265.5:ENST00000319349.10:ENST00000393664.6:ENST00000545954.5:ENST00000545089.5:ENST00000591713.5:ENST00000590236.5:ENST00000585508.5:ENST00000587151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	205	2	4.82222	5.942735	7.06325	0.0014427	2.24831e-4	0.023287	0.00491787
chr1	228156447	228156546	358151	0	+	0.515152	(0.485,0.523]	chr1	40434	61	INTRON	INTRON	GJC2	ENSG00000198835.4	ENST00000366714.3	protein_coding	protein_coding	protein_coding	protein_coding	1	206	2	4.7958	5.942645	7.08949	0.00135789	2.51583e-4	0.0224546	0.00534704
chrX	131330690	131330790	8106179	0	-	0.41	(0.39,0.419]	chrX	845230	262	INTRON	INTRON	IGSF1	ENSG00000147255.19	ENST00000370904.6	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.56518	5.942565	6.31995	0.027797	6.3352e-4	0.112962	0.0102998
chr9	134341430	134341530	4260837	0	+	0.48	(0.45,0.485]	chr9	406311	144	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	97	2	5.71928	5.942395	6.16551	0.00879664	0.00219685	0.0630845	0.0245167
chrX	9688870	9688966	7844703	0	+	0.510417	(0.485,0.523]	chrX	822468	2	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000645686.1:ENST00000646640.1:ENST00000683056.1:ENST00000647060.1:ENST00000684110.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	94	2	5.82081	5.9423449999999995	6.06388	0.0138807	7.70737e-4	0.0804838	0.0118331
chr13	75419083	75419183	5727375	0	-	0.34	(0.33,0.36]	chr13	561722	419	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	1	213	2	4.75564	5.942175	7.12871	0.00159605	3.6287e-4	0.0246766	0.00698402
chr10	21570178	21570278	4457225	0	+	0.54	(0.523,0.58]	chr10	426935	120	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000651097.1:ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000650772.1:ENST00000651298.1:ENST00000495130.5:ENST00000377059.7:ENST00000476557.5:ENST00000462999.5:ENST00000430455.2:ENST00000479634.1:ENST00000480415.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	206	2	4.74483	5.942075	7.13932	0.00124255	2.83162e-4	0.0214257	0.00581439
chr17	14400569	14400669	6683542	0	+	0.38	(0.36,0.39]	chr17	670768	30	INTRON	INTRON	ENSG00000230647	ENSG00000230647.2	ENST00000436469.1:ENST00000655690.1	lncRNA	lncRNA	lncRNA	lncRNA	2	290	2	4.52658	5.941905	7.35723	0.00130006	2.11385e-4	0.0220198	0.00470901
chr3	14416111	14416211	1415108	0	+	0.54	(0.523,0.58]	chr3	151906	3	SS3_PROX	SS3_PROX:INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000613930.4:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	95	2	5.62258	5.941855	6.26113	0.0193313	4.27166e-4	0.0954446	0.00779962
chr16	85230465	85230565	6515373	0	+	0.59	(0.58,1]	chr16	646377	27	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	101	2	5.36153	5.941755000000001	6.52198	0.00273899	0.00186556	0.028553	0.0269723
chr18	74638356	74638454	7089656	0	+	0.367347	(0.36,0.39]	chr18	722420	23	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000582337.5:ENST00000309902.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	97	2	5.6372	5.9417	6.2462	0.024533	7.62178e-4	0.106796	0.0117554
chr11	70631229	70631329	5060585	0	-	0.46	(0.45,0.485]	chr11	492663	1279	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	96	2	5.79191	5.941605	6.0913	0.00998516	0.00183113	0.0673647	0.0216571
chr16	66604009	66604031	6469314	0	+	0.590909	(0.58,1]	chr16	641972	1	SS5_PROX	SS5_PROX:INTRON	CMTM3	ENSG00000140931.20	ENST00000563672.5	protein_coding	protein_coding	protein_coding	protein_coding	0	97	2	5.50497	5.9415949999999995	6.37822	0.00252415	0.00187297	0.031696	0.0219434
chr17	38704347	38704447	6729101	0	+	0.53	(0.523,0.58]	chr17	676275	20	EXON_LNCRNA	EXON_LNCRNA	ENSG00000277969	ENSG00000277969.1	ENST00000612330.1	lncRNA	lncRNA	lncRNA	lncRNA	0	94	2	5.93864	5.941265	5.94389	0.0114442	0.0010207	0.0723462	0.0143498
chr22	50675451	50675551	7754918	0	+	0.59	(0.58,1]	chr22	812694	2	SS5_PROX	SS5_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	95	2	5.59324	5.94119	6.28914	0.00303562	0.0014734	0.0350226	0.0185589
chr17	37280685	37280784	6892034	0	-	0.363636	(0.36,0.39]	chr17	699892	23	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	96	2	5.76893	5.94103	6.11313	0.0200694	0.00107374	0.0971995	0.0148869
chr2	239279279	239279378	1391501	0	-	0.414141	(0.39,0.419]	chr2	148740	277	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	97	2	5.63585	5.94074	6.24563	0.025023	7.69256e-4	0.10758	0.0118331
chr19	32351330	32351430	7238532	0	+	0.54	(0.523,0.58]	chr19	741026	36	INTRON	INTRON	ZNF507	ENSG00000168813.17	ENST00000311921.8:ENST00000355898.6:ENST00000587084.5:ENST00000544431.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	97	2	5.65959	5.940429999999999	6.22127	0.00699217	0.0021416	0.0555241	0.0240825
chr22	25487325	25487425	7701417	0	+	0.53	(0.523,0.58]	chr22	805972	258	INTRON	INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000686640.1:ENST00000509460.3:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	115	2	5.08882	5.94038	6.79194	0.00834774	0.00243746	0.0598672	0.0311222
chr3	13374273	13374373	1692591	0	-	0.45	(0.419,0.45]	chr3	176729	4	SS3_PROX	SS3_PROX:INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000420141.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	269	2	4.21498	5.94029	7.6656	0.00862096	1.6898e-5	0.0623824	7.44477e-4
chr13	93314701	93314801	5618659	0	+	0.47	(0.45,0.485]	chr13	553052	867	INTRON	INTRON	GPC6	ENSG00000183098.11	ENST00000377047.9	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.46558	5.940245	6.41491	0.0273644	0.00034885200000000003	0.112372	0.00674746
chr4	2755250	2755349	2183518	0	-	0.464646	(0.45,0.485]	chr4	221459	70	INTRON	INTRON	TNIP2	ENSG00000168884.15	ENST00000315423.12:ENST00000510267.5:ENST00000503235.1:ENST00000507686.1:ENST00000511352.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	95	2	5.89443	5.94022	5.98601	0.0119228	0.00141013	0.0741726	0.0180659
chr15	101274967	101275063	6362279	0	-	0.5	(0.485,0.523]	chr15	627046	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SELENOS	ENSG00000131871.15	ENST00000398226.7:ENST00000531964.5:ENST00000526043.1:ENST00000526049.6:ENST00000528346.1:ENST00000527833.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	94	2	5.75784	5.939875	6.12191	0.0154142	6.58016e-4	0.0849828	0.0106077
chr4	78183640	78183740	2067130	0	+	0.42	(0.419,0.45]	chr4	211144	1117	INTRON	INTRON	FRAS1	ENSG00000138759.20	ENST00000512123.4:ENST00000682513.1:ENST00000684159.1:ENST00000508900.2:ENST00000325942.11:ENST00000502446.6:ENST00000683711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	99	2	5.52073	5.93985	6.35897	0.0327198	6.44911e-4	0.122543	0.0104285
chr16	85235365	85235465	6515422	0	+	0.61	(0.58,1]	chr16	646377	76	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	224	2	4.13012	5.9397400000000005	7.74936	0.00116063	1.17491e-4	0.0157704	0.00604041
chr17	75805756	75805856	6800350	0	+	0.46	(0.45,0.485]	chr17	686178	117	INTRON	INTRON	UNK	ENSG00000132478.10	ENST00000589666.6:ENST00000592629.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	98	2	5.6428	5.939445	6.23609	0.00778782	0.00265386	0.0590114	0.027979
chr3	136439414	136439513	1922201	0	-	0.444444	(0.419,0.45]	chr3	195534	54	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2:ENST00000487065.5:ENST00000492318.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	99	2	5.68676	5.9392	6.19164	0.0118587	0.00338051	0.0740271	0.0328791
chr9	128755207	128755307	4415545	0	-	0.45	(0.419,0.45]	chr9	421319	4	SS5_PROX	SS5_PROX:INTRON	ZER1	ENSG00000160445.11	ENST00000291900.7:ENST00000494461.1:ENST00000414921.5:ENST00000427848.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	99	2	5.68676	5.9392	6.19164	0.0118587	0.00338051	0.0740271	0.0328791
chr8	70326475	70326575	3994479	0	-	0.35	(0.33,0.36]	chr8	382245	293	INTRON	INTRON	NCOA2	ENSG00000140396.13	ENST00000452400.7:ENST00000518287.6:ENST00000520416.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	95	2	5.87022	5.938945	6.00767	0.0148989	0.00123038	0.0834354	0.0164259
chr19	3528709	3528808	7191585	0	+	0.59596	(0.58,1]	chr19	732249	5	INTRON	INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	94	2	5.63543	5.9389400000000006	6.24245	0.00334087	0.00131165	0.0368376	0.0171898
chr7	111191414	111191514	3683978	0	-	0.39	(0.36,0.39]	chr7	354615	2275	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	96	2	5.73711	5.938925	6.14074	0.0210765	0.0010006	0.0996078	0.0142243
chr11	57500478	57500578	5038778	0	-	0.49	(0.485,0.523]	chr11	488208	3	SS5_PROX	SS5_PROX:INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	548	2	5.28651	5.93867	6.59083	7.53491e-4	8.08921e-7	0.0162173	9.13796e-5
chr19	46979091	46979191	7275364	0	+	0.48	(0.45,0.485]	chr19	747275	413	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	254	2	4.59137	5.93862	7.28587	0.00338473	2.71448e-5	0.0372054	0.00104767
chr6	1681125	1681225	3079681	0	-	0.52	(0.485,0.523]	chr6	299464	8	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000533279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	256	2	4.08211	5.938365	7.79462	0.00793825	4.16953e-6	0.0596361	2.78321e-4
chr21	35205641	35205741	7659014	0	-	0.51	(0.485,0.523]	chr21	801082	1402	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000475045.6	protein_coding	protein_coding	protein_coding	protein_coding	0	108	2	5.25048	5.938255	6.62603	0.0059614	0.00330946	0.0479866	0.0368376
chr2	61090694	61090794	808198	0	+	0.52	(0.485,0.523]	chr2	91828	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SANBR	ENSG00000162929.14	ENST00000402291.6:ENST00000453186.5:ENST00000295031.9:ENST00000356719.6:ENST00000612149.1:ENST00000453873.5:ENST00000483509.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	281	2	4.1708	5.937749999999999	7.7047	4.15896e-4	3.94091e-4	0.0113656	0.00768537
chr19	35004523	35004623	7244905	0	+	0.52	(0.485,0.523]	chr19	742073	13	INTRON	INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	110	2	5.19749	5.937735	6.67798	0.00672953	0.00300122	0.0519464	0.0348875
chr5	34220450	34220549	2634606	0	-	0.414141	(0.39,0.419]	chr5	261391	1	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000508395.5:ENST00000512782.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	96	2	5.90288	5.93773	5.97258	0.0148746	0.00183094	0.0833515	0.0216571
chr17	57349322	57349422	6760698	0	+	0.49	(0.485,0.523]	chr17	682104	386	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	94	2	5.7253	5.937685	6.15007	0.0162644	6.0909e-4	0.0873195	0.0100377
chr3	58009755	58009855	1483051	0	+	0.56	(0.523,0.58]	chr3	159572	5	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	215	2	4.44549	5.93735	7.42921	6.97397e-4	6.76791e-4	0.0155984	0.0108252
chr6	117582256	117582356	3242179	0	-	0.55	(0.523,0.58]	chr6	314277	28	INTRON	INTRON	GOPC	ENSG00000047932.14	ENST00000052569.10:ENST00000368498.7:ENST00000535237.2	protein_coding	protein_coding	protein_coding	protein_coding	1	207	2	4.66305	5.93731	7.21157	0.00107726	3.60484e-4	0.0197563	0.00694446
chr7	6702782	6702880	3542741	0	-	0.428571	(0.419,0.45]	chr7	342318	20	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	0	101	2	5.57051	5.937155	6.3038	0.00990101	0.00441471	0.0671959	0.0393688
chr16	78858135	78858235	6503000	0	+	0.35	(0.33,0.36]	chr16	645717	778	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	100	2	5.38284	5.9369250000000005	6.49101	0.0317908	3.40831e-4	0.121384	0.00667174
chr14	39084463	39084563	5967659	0	-	0.32	(0.29,0.33]	chr14	584638	80	INTRON	INTRON	SEC23A	ENSG00000100934.15	ENST00000307712.11:ENST00000537403.5:ENST00000545328.6	protein_coding	protein_coding	protein_coding	protein_coding	1	216	2	4.4366	5.936590000000001	7.43658	7.43934e-4	5.78115e-4	0.0140737	0.0115713
chr4	77818873	77818973	2256070	0	-	0.76	(0.58,1]	chr4	227830	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CNOT6L	ENSG00000138767.14	ENST00000504123.7:ENST00000649644.1:ENST00000515506.6:ENST00000512485.6:ENST00000504804.7:ENST00000506166.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	99	2	5.41094	5.936529999999999	6.46212	0.00240622	0.00211728	0.028892	0.0261006
chrX	48918232	48918331	8040673	0	-	0.646465	(0.58,1]	chrX	838764	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PIM2	ENSG00000102096.9	ENST00000376509.4	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.41094	5.936529999999999	6.46212	0.00240622	0.00211728	0.028892	0.0261006
chr3	98745878	98745978	1516345	0	+	0.41	(0.39,0.419]	chr3	161540	119	INTRON	INTRON	ST3GAL6	ENSG00000064225.13	ENST00000489112.5:ENST00000265261.11:ENST00000460774.5:ENST00000469105.5:ENST00000466482.5:ENST00000462152.5:ENST00000486249.5:ENST00000497008.5:ENST00000486334.6:ENST00000394162.5:ENST00000613264.5:ENST00000480133.1:ENST00000465004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	269	2	4.06365	5.936465	7.80928	0.0102519	9.12169e-6	0.0684871	4.80537e-4
chr17	72558123	72558223	6963892	0	-	0.43	(0.419,0.45]	chr17	710389	237	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	283	2	3.88645	5.936275	7.9861	0.0149102	6.52302e-6	0.083462	3.81713e-4
chr6	11502512	11502611	2853501	0	+	0.282828	[0,0.29]	chr6	278898	117	INTRON	INTRON	ENSG00000242753	ENSG00000242753.2	ENST00000665550.1:ENST00000423149.1	lncRNA	lncRNA	lncRNA	lncRNA	1	198	2	5.04236	5.936225	6.83009	0.00108855	9.7661500000000007e-05	0.0198652	0.00268525
chr6	170398669	170398768	3076566	0	+	0.40404	(0.39,0.419]	chr6	299192	27	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	10	2590	2	5.21031	5.9361999999999995	6.66209	2.37623e-4	6.35719e-8	0.0086821	1.73561e-5
chr15	30679202	30679301	6071347	0	+	0.373737	(0.36,0.39]	chr15	596534	55	INTRON	INTRON	ENSG00000284906:ENSG00000285035:ENSG00000187951	ENSG00000284906.3:ENSG00000285035.2:ENSG00000187951.11	ENST00000685924.1:ENST00000563110.6:ENST00000566548.5:ENST00000602616.6:ENST00000562954.1	protein_coding	protein_coding	protein_coding:lncRNA:transcribed_unprocessed_pseudogene	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	0	96	2	5.87084	5.935915	6.00099	0.0139273	0.00196738	0.0805916	0.022768300000000002
chr7	140813891	140813991	3727712	0	-	0.4	(0.39,0.419]	chr7	358048	45	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000644120.1:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	101	2	5.53798	5.93553	6.33308	0.00825437	0.0043589	0.0609913	0.0391245
chr20	35658729	35658829	7554092	0	-	0.47	(0.45,0.485]	chr20	788669	4	SS5_PROX	SS5_PROX:INTRON	CPNE1:RBM12	ENSG00000214078.13:ENSG00000244462.8	ENST00000352393.8:ENST00000397443.7:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000435747.2:ENST00000374114.8:ENST00000359646.1:ENST00000374104.7:ENST00000424458.5:ENST00000431148.1:ENST00000435161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	208	2	4.84201	5.935309999999999	7.02861	0.00184	2.49386e-4	0.0267545	0.00530842
chr16	89349992	89350091	6660318	0	-	0.414141	(0.39,0.419]	chr16	666695	63	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	96	2	5.70321	5.93524	6.16727	0.0226065	9.41833e-4	0.102982	0.0135546
chr13	113610295	113610395	5659103	0	+	0.58	(0.523,0.58]	chr13	555775	241	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	98	2	5.39327	5.935195	6.47712	0.0277354	2.30436e-4	0.112851	0.00498593
chr5	172048360	172048460	2810375	0	-	0.44	(0.419,0.45]	chr5	275213	25	INTRON	INTRON	STK10	ENSG00000072786.13	ENST00000176763.10:ENST00000517360.1:ENST00000520476.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	100	2	5.61031	5.935145	6.25998	0.0106277	0.004032	0.0698136	0.0371291
chr1	228151497	228151596	358101	0	+	0.555556	(0.523,0.58]	chr1	40434	11	INTRON	INTRON	GJC2	ENSG00000198835.4	ENST00000366714.3	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.53665	5.935055	6.33346	0.00571732	0.00291382	0.0498083	0.0298557
chr6	63542013	63542113	2933829	0	+	0.39	(0.36,0.39]	chr6	288732	91	INTRON	INTRON	PTP4A1	ENSG00000112245.13	ENST00000648894.1:ENST00000639568.2:ENST00000470661.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	216	2	5.03666	5.9348	6.83294	0.00338675	1.82419e-4	0.0372054	0.00423714
chr17	29772908	29773008	6879166	0	-	0.51	(0.485,0.523]	chr17	698253	116	INTRON	INTRON	SSH2	ENSG00000141298.19	ENST00000540801.6:ENST00000269033.7:ENST00000394848.5:ENST00000579040.5:ENST00000577483.1:ENST00000592397.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	95	2	5.76929	5.934665	6.10004	0.00860355	0.00167976	0.0623467	0.0203806
chr6	43181216	43181313	2918600	0	+	0.546392	(0.523,0.58]	chr6	286865	22	UTR3	UTR3:EXON_MRNA	SRF	ENSG00000112658.8	ENST00000265354.6	protein_coding	protein_coding	protein_coding	protein_coding	2	274	2	4.66945	5.93461	7.19977	0.00110271	8.79485e-5	0.020005	0.00248329
chr20	44424775	44424851	7483178	0	+	0.447368	(0.419,0.45]	chr20	779693	2	UTR3	UTR3:EXON_MRNA:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000316099.10:ENST00000372920.1:ENST00000415691.2:ENST00000619550.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	96	2	5.8512	5.934575000000001	6.01795	0.0201381	0.00152916	0.0973365	0.0191213
chr4	186695774	186695874	2374902	0	-	0.52	(0.485,0.523]	chr4	237245	318	INTRON	INTRON	FAT1	ENSG00000083857.15	ENST00000441802.7	protein_coding	protein_coding	protein_coding	protein_coding	0	94	2	5.87431	5.934525000000001	5.99474	0.0103305	0.00127835	0.0684871	0.0168904
chr15	30639979	30640074	6070946	0	+	0.421053	(0.419,0.45]	chr15	596498	3	INTRON	INTRON	ENSG00000284906:ARHGAP11B	ENSG00000284906.3:ENSG00000285077.3	ENST00000564902.5:ENST00000428041.4:ENST00000693711.1:ENST00000685924.1:ENST00000563110.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	96	2	5.82136	5.9343	6.04724	0.0210659	0.00142238	0.0996078	0.0181715
chrX	130222175	130222274	8102195	0	-	0.444444	(0.419,0.45]	chrX	844940	13	INTRON	INTRON	ZNF280C	ENSG00000056277.16	ENST00000370978.9:ENST00000447817.1	protein_coding	protein_coding	protein_coding	protein_coding	0	96	2	5.82136	5.9343	6.04724	0.0210659	0.00142238	0.0996078	0.0181715
chr6	131584841	131584940	3262309	0	-	0.565657	(0.523,0.58]	chr6	315611	102	INTRON	INTRON	MED23	ENSG00000112282.18	ENST00000354577.8	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.5788	5.934215	6.28963	0.00618741	0.00262418	0.0519442	0.0278348
chr13	95225137	95225236	5742914	0	-	0.424242	(0.419,0.45]	chr13	562871	140	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	98	2	5.72351	5.93386	6.14421	0.0127879	0.00310292	0.0769397	0.0311614
chr6	158606145	158606245	3064362	0	+	0.73	(0.58,1]	chr6	297723	4	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	0	108	2	5.14497	5.933695	6.72242	0.00474658	0.00121317	0.0413976	0.0210863
chr15	65345537	65345637	6303421	0	-	0.46	(0.45,0.485]	chr15	621381	92	INTRON	INTRON	IGDCC3	ENSG00000174498.14	ENST00000327987.9:ENST00000558354.5:ENST00000559058.1	protein_coding	protein_coding	protein_coding	protein_coding	0	95	2	5.64922	5.93366	6.2181	0.020599	5.99406e-4	0.0982852	0.00993857
chr12	56597349	56597447	5437626	0	-	0.479592	(0.45,0.485]	chr12	534676	19	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	4	393	2	3.67939	5.93292	8.18645	6.63602e-4	1.86652e-4	0.0106896	0.00769604
chr12	12729972	12730072	5171971	0	+	0.53	(0.523,0.58]	chr12	503539	32	INTRON	INTRON	APOLD1	ENSG00000178878.13	ENST00000540583.5:ENST00000534843.1:ENST00000326765.10:ENST00000588943.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	101	2	5.44845	5.93289	6.41733	0.00490887	0.00361636	0.0457614	0.0342681
chr6	116729062	116729162	2990886	0	+	0.35	(0.33,0.36]	chr6	292999	1	SS3_PROX	SS3_PROX:INTRON	KPNA5	ENSG00000196911.11	ENST00000368564.7:ENST00000356348.6	protein_coding	protein_coding	protein_coding	protein_coding	0	103	2	5.4188	5.932869999999999	6.44694	0.00558656	0.00513015	0.0493906	0.0435186
chr12	132532270	132532370	5352938	0	+	0.64	(0.58,1]	chr12	523670	39	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.86491	5.93285	6.00079	0.00707578	4.59827e-4	0.0558168	0.00821903
chr18	74622882	74622982	7089500	0	+	0.43	(0.419,0.45]	chr18	722412	246	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000582337.5	protein_coding	protein_coding	protein_coding	protein_coding	0	97	2	5.62805	5.932605000000001	6.23716	0.0280406	8.82327e-4	0.113651	0.0129974
chr16	50624389	50624488	6452173	0	+	0.262626	[0,0.29]	chr16	639918	23	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.69523	5.9325399999999995	6.16985	0.010611	4.50947e-4	0.0697759	0.00815756
chr3	65546022	65546122	1810926	0	-	0.43	(0.419,0.45]	chr3	187255	133	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5:ENST00000476403.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	97	2	5.79433	5.932175000000001	6.07002	0.0143746	0.00262626	0.0821732	0.0278348
chr19	4492335	4492431	7193759	0	+	0.552083	(0.523,0.58]	chr19	732770	1	INTRON	INTRON	HDGFL2	ENSG00000167674.15	ENST00000616600.5:ENST00000621835.4:ENST00000589486.5:ENST00000615225.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	97	2	5.61976	5.9320900000000005	6.24442	0.00670944	0.00236826	0.0541591	0.0259199
chr14	30947463	30947563	5951207	0	-	0.33	(0.29,0.33]	chr14	583098	2	SS3_PROX	SS3_PROX:INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000555152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	97	2	5.44135	5.932085	6.42282	0.0236557	3.05448e-4	0.105002	0.00616054
chr17	77487223	77487323	6805254	0	+	0.61	(0.58,1]	chr17	686822	4	SS3_PROX	SS3_PROX:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	90	2	5.89541	5.931775	5.96814	0.0066708	5.06433e-4	0.0540577	0.00881473
chr20	32378144	32378244	7455887	0	+	0.49	(0.485,0.523]	chr20	776143	57	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	1024	2	5.86358	5.931395	5.99921	6.42651e-5	1.90529e-6	0.00446482	1.61283e-4
chr16	89430055	89430155	6661134	0	-	0.54	(0.523,0.58]	chr16	666747	113	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	873	2	5.91472	5.93136	5.948	1.91411e-4	6.62449e-7	0.00779887	8.00977e-5
chr1	950245	950340	379863	0	-	0.505263	(0.485,0.523]	chr1	42700	13	INTRON	INTRON	NOC2L	ENSG00000188976.11	ENST00000327044.7:ENST00000477976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	94	2	5.65791	5.931355	6.2048	0.0181582	5.23665e-4	0.0921579	0.0090184
chr4	869076	869174	2178283	0	-	0.479592	(0.45,0.485]	chr4	220580	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	94	2	5.8121	5.93135	6.0506	0.0158765	9.38528e-4	0.0859576	0.0135546
chr11	87148946	87149046	4911496	0	+	0.32	(0.29,0.33]	chr11	474124	572	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000529023.5:ENST00000526733.5:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5:ENST00000531800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	97	2	5.61082	5.931275	6.25173	0.00588805	0.00264971	0.0506158	0.027979
chr6	170397174	170397274	3076551	0	+	0.55	(0.523,0.58]	chr6	299192	12	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	0	95	2	5.55012	5.9310600000000004	6.312	0.0217068	3.69994e-4	0.100615	0.00704866
chr9	123637954	123638053	4398961	0	-	0.474747	(0.45,0.485]	chr9	419680	71	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1:ENST00000474676.1:ENST00000475615.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	98	2	5.60298	5.930925	6.25887	0.00748565	0.00292492	0.0576451	0.029882
chr1	41073618	41073718	453230	0	-	0.48	(0.45,0.485]	chr1	54615	25	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000372595.5:ENST00000326197.11:ENST00000695336.1:ENST00000456518.3:ENST00000695337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	96	2	5.54186	5.93086	6.31986	0.0243502	4.53935e-4	0.106588	0.00818426
chr18	80177662	80177762	7183055	0	-	0.46	(0.45,0.485]	chr18	730359	167	INTRON	INTRON	PARD6G	ENSG00000178184.16	ENST00000353265.8	protein_coding	protein_coding	protein_coding	protein_coding	0	96	2	5.54186	5.93086	6.31986	0.0243502	4.53935e-4	0.106588	0.00818426
chr3	52238791	52238891	1777966	0	-	0.6	(0.58,1]	chr3	184838	4	SS5_PROX	SS5_PROX:INTRON	TWF2	ENSG00000247596.10	ENST00000305533.10:ENST00000678838.1:ENST00000679296.1:ENST00000676989.1:ENST00000678549.1:ENST00000678700.1:ENST00000676800.1:ENST00000677127.1:ENST00000678681.1:ENST00000499914.2:ENST00000472755.2:ENST00000678330.1:ENST00000676988.1:ENST00000677058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	96	2	5.50497	5.930715	6.35646	0.00264106	0.00187297	0.0325876	0.0219434
chr14	105216163	105216261	6058159	0	-	0.612245	(0.58,1]	chr14	594783	29	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000392557.8:ENST00000446501.6:ENST00000635152.1:ENST00000547374.5:ENST00000551787.5:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	94	2	5.39546	5.93063	6.4658	0.0168207	1.09908e-4	0.0884836	0.00294443
chr11	70785351	70785451	5062135	0	-	0.54	(0.523,0.58]	chr11	492701	675	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	95	2	5.73609	5.930435	6.12478	0.00829271	0.0017613	0.0610772	0.0211077
chr17	61271550	61271650	6776941	0	+	0.56	(0.523,0.58]	chr17	683282	258	INTRON	INTRON	BCAS3	ENSG00000141376.23	ENST00000407086.8:ENST00000589222.5:ENST00000390652.9:ENST00000588462.5:ENST00000408905.7:ENST00000588874.5:ENST00000585744.5:ENST00000585979.5:ENST00000587002.1:ENST00000585812.5:ENST00000587294.5:ENST00000592702.5:ENST00000588569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	95	2	5.73609	5.930435	6.12478	0.00829271	0.0017613	0.0610772	0.0211077
chr5	176588233	176588332	2596937	0	+	0.484848	(0.45,0.485]	chr5	257747	10	INTRON	INTRON	CDHR2	ENSG00000074276.11	ENST00000510636.5:ENST00000261944.10:ENST00000506348.1:ENST00000513031.5:ENST00000508085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	94	2	5.90167	5.930305000000001	5.95894	0.0137135	0.00119342	0.0799457	0.016037
chr1	40309537	40309637	451995	0	-	0.59	(0.58,1]	chr1	54429	2	SS5_PROX	SS5_PROX:INTRON	COL9A2	ENSG00000049089.15	ENST00000372748.8:ENST00000482722.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	92	2	5.71628	5.930275	6.14427	0.00407804	0.00104668	0.0413652	0.0146403
chr3	13023795	13023895	1689374	0	-	0.59	(0.58,1]	chr3	176542	13	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.73602	5.93023	6.12444	0.00904546	3.17437e-4	0.0637469	0.00632787
chr15	66985483	66985583	6307337	0	-	0.3	(0.29,0.33]	chr15	621951	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000259347	ENSG00000259347.8	ENST00000670149.1:ENST00000692307.1:ENST00000665471.1:ENST00000655852.1:ENST00000558071.2:ENST00000558097.5	lncRNA	lncRNA	lncRNA	lncRNA	0	107	2	5.24515	5.930175	6.6152	0.00631714	0.00297819	0.0501889	0.0347831
chr2	239159842	239159941	1390295	0	-	0.656566	(0.58,1]	chr2	148698	27	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	90	2	5.92528	5.930009999999999	5.93474	0.0062948	5.58693e-4	0.0523832	0.00944382
chr9	134341131	134341231	4260834	0	+	0.69	(0.58,1]	chr9	406311	141	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	90	2	5.92528	5.930009999999999	5.93474	0.0062948	5.58693e-4	0.0523832	0.00944382
chr2	102108171	102108271	863467	0	+	0.4	(0.39,0.419]	chr2	97787	29	INTRON	INTRON	IL1R1	ENSG00000115594.12	ENST00000452403.5:ENST00000409929.5:ENST00000424272.5:ENST00000409589.5:ENST00000409329.5	protein_coding	protein_coding	protein_coding	protein_coding	0	97	2	5.73194	5.929845	6.12775	0.0115883	0.00276973	0.0731017	0.0286873
chr9	128966211	128966310	4248900	0	+	0.393939	(0.39,0.419]	chr9	404239	67	INTRON	INTRON	NUP188	ENSG00000095319.14	ENST00000372577.2	protein_coding	protein_coding	protein_coding	protein_coding	0	97	2	5.73194	5.929845	6.12775	0.0115883	0.00276973	0.0731017	0.0286873
chr5	1328795	1328894	2609103	0	-	0.494949	(0.485,0.523]	chr5	259719	25	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	288	2	4.97593	5.929805	6.88368	0.00202693	3.48385e-5	0.0283135	0.00126017
chr2	36549966	36550064	759600	0	+	0.346939	(0.33,0.36]	chr2	88071	14	UTR3	UTR3:EXON_MRNA	CRIM1	ENSG00000150938.10	ENST00000280527.7	protein_coding	protein_coding	protein_coding	protein_coding	4	921	2	5.31777	5.929790000000001	6.54181	7.06583e-5	8.16349e-6	0.00470781	4.44994e-4
chr18	705078	705177	7103033	0	-	0.353535	(0.33,0.36]	chr18	723437	74	INTRON	INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000584453.5:ENST00000578651.5:ENST00000585004.5:ENST00000579053.5:ENST00000583771.1:ENST00000580605.5:ENST00000581332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	95	2	5.68109	5.929775	6.17846	0.0201622	7.89942e-4	0.0973366	0.0120519
chr10	22683734	22683834	4647387	0	-	0.49	(0.485,0.523]	chr10	443564	215	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5:ENST00000605011.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	102	2	5.21769	5.92966	6.64163	0.0359739	1.50187e-4	0.127853	0.0036849
chr1	9295293	9295393	19607	0	+	0.56	(0.523,0.58]	chr1	2205	3	INTRON	INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11:ENST00000450402.1	protein_coding	protein_coding	protein_coding	protein_coding	0	96	2	5.47382	5.929455	6.38509	0.0244797	3.00426e-4	0.106683	0.00607383
chr1	3469593	3469693	5804	0	+	0.7	(0.58,1]	chr1	1227	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5	protein_coding	protein_coding	protein_coding	protein_coding	0	97	2	5.45872	5.929185	6.39965	0.00241374	0.00211999	0.0309229	0.0239744
chr9	6942315	6942359	4116804	0	+	0.454545	(0.45,0.485]	chr9	391902	1	SS3_PROX	SS3_PROX:INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000438023.5:ENST00000381306.7:ENST00000381309.8:ENST00000543771.5:ENST00000496464.1:ENST00000428870.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	95	2	5.79191	5.9288	6.06569	0.0104281	0.00183113	0.0687558	0.0216571
chr6	167891429	167891529	3073993	0	+	0.35	(0.33,0.36]	chr6	298835	4	SS5_PROX	SS5_PROX:INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	211	2	4.7408	5.928555	7.11631	0.00163405	3.78399e-4	0.0250684	0.00719141
chr10	103835918	103836018	4758464	0	-	0.54	(0.523,0.58]	chr10	454819	342	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	0	93	2	5.78924	5.928355	6.06747	0.0147166	7.30845e-4	0.0826843	0.0113963
chr5	80440623	80440714	2465528	0	+	0.43956	(0.419,0.45]	chr5	246293	2	INTRON	INTRON	ZFYVE16	ENSG00000039319.17	ENST00000338008.9:ENST00000510158.5:ENST00000512558.5:ENST00000505560.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	620	2	5.88996	5.92831	5.96666	3.54492e-4	1.69632e-5	0.0107472	7.46414e-4
chr10	132754572	132754672	4619018	0	+	0.45	(0.419,0.45]	chr10	441201	7	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.52073	5.928075	6.33542	0.0327198	6.85495e-4	0.122543	0.0108846
chr2	127333286	127333385	1265104	0	-	0.373737	(0.36,0.39]	chr2	136349	24	INTRON	INTRON	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5:ENST00000344908.9	protein_coding	protein_coding	protein_coding	protein_coding	1	273	2	4.88565	5.9280349999999995	6.97042	0.00230604	1.0585e-4	0.0302623	0.00286061
chr10	76416843	76416943	4530348	0	+	0.4	(0.39,0.419]	chr10	432342	131	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593699.5:ENST00000372499.5:ENST00000496424.2:ENST00000598708.1:ENST00000488655.5:ENST00000468134.1:ENST00000597823.1:ENST00000596228.5:ENST00000483375.1:ENST00000488759.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	96	2	5.63585	5.927915	6.21998	0.025023	8.22163e-4	0.10758	0.0124043
chr2	9350208	9350307	714526	0	+	0.40404	(0.39,0.419]	chr2	83433	51	INTRON	INTRON	ASAP2	ENSG00000151693.11	ENST00000315273.4:ENST00000281419.8:ENST00000641030.1	protein_coding	protein_coding	protein_coding	protein_coding	0	96	2	5.63585	5.927915	6.21998	0.025023	8.22163e-4	0.10758	0.0124043
chr1	119957805	119957903	571668	0	-	0.469388	(0.45,0.485]	chr1	65664	22	INTRON	INTRON	NOTCH2	ENSG00000134250.21	ENST00000256646.7:ENST00000479412.2:ENST00000640021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	97	2	5.6428	5.927875	6.21295	0.00810629	0.00265386	0.0602166	0.027979
chr7	101505182	101505282	3433416	0	+	0.49	(0.485,0.523]	chr7	332437	570	INTRON	INTRON	COL26A1	ENSG00000160963.14	ENST00000313669.12:ENST00000613501.1	protein_coding	protein_coding	protein_coding	protein_coding	0	96	2	5.47425	5.92787	6.38149	0.0243396	3.18797e-4	0.106588	0.00634142
chr13	113049226	113049326	5656127	0	+	0.62	(0.58,1]	chr13	555180	20	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	103	2	5.25731	5.927720000000001	6.59813	0.00358178	0.00158605	0.0342681	0.0245893
chr19	33507154	33507253	7365925	0	-	0.626263	(0.58,1]	chr19	763467	58	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000651646.1:ENST00000590408.1:ENST00000593163.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	90	2	5.90055	5.927545	5.95454	0.0059453	6.1741e-4	0.0506158	0.0101143
chr4	709360	709459	1993721	0	+	0.373737	(0.36,0.39]	chr4	203088	30	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	368	2	3.55415	5.92748	8.30081	0.0116019	1.99852e-6	0.0731668	1.66738e-4
chr7	718241	718341	3525283	0	-	0.31	(0.29,0.33]	chr7	340444	10	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000537384.6:ENST00000403562.5:ENST00000417852.5:ENST00000488474.1:ENST00000478198.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	93	2	5.88801	5.927415	5.96682	0.0112593	0.00106564	0.0720977	0.0148659
chr11	67296317	67296415	4880154	0	+	0.408163	(0.39,0.419]	chr11	470037	38	INTRON	INTRON	ANKRD13D	ENSG00000172932.16	ENST00000511455.7:ENST00000308440.11:ENST00000447274.7:ENST00000506531.5:ENST00000504186.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	287	2	4.44739	5.927325	7.40726	0.00122356	2.66913e-4	0.021209	0.00557451
chr7	112473061	112473161	3448799	0	+	0.43	(0.419,0.45]	chr7	334075	2	SS5_PROX	SS5_PROX:INTRON	IFRD1	ENSG00000006652.15	ENST00000675578.1:ENST00000621379.4:ENST00000005558.8:ENST00000403825.8:ENST00000674915.1:ENST00000674887.1:ENST00000675041.1:ENST00000675717.1:ENST00000535603.5:ENST00000489994.5:ENST00000462155.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	96	2	5.6954	5.9271	6.1588	0.0254103	0.00107628	0.108573	0.0148869
chr16	81667867	81667965	6509985	0	+	0.561224	(0.523,0.58]	chr16	645961	7	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	2	291	2	3.94014	5.92691	7.91368	7.92645e-4	2.58976e-4	0.0120621	0.0091002
chr11	68491269	68491369	4883786	0	+	0.39	(0.36,0.39]	chr11	470696	301	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	409	2	3.58134	5.926595000000001	8.27185	0.00107456	2.25148e-4	0.0148869	0.00847971
chr19	19074507	19074606	7225614	0	+	0.545455	(0.523,0.58]	chr19	739606	100	INTRON	INTRON	SLC25A42	ENSG00000181035.14	ENST00000318596.8:ENST00000597661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	204	2	4.71267	5.925995	7.13932	0.00124255	3.11451e-4	0.0214257	0.00624487
chr13	113050814	113050914	5656143	0	+	0.63	(0.58,1]	chr13	555180	36	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	101	2	5.31036	5.92588	6.5414	0.00312721	0.00179018	0.0311915	0.0262802
chr13	49673929	49674029	5711818	0	-	0.4	(0.39,0.419]	chr13	560443	37	INTRON	INTRON	EBPL	ENSG00000123179.14	ENST00000242827.11:ENST00000378284.6:ENST00000378272.9:ENST00000495963.2:ENST00000473576.6:ENST00000378270.5:ENST00000378268.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	95	2	5.91692	5.92584	5.93476	0.0162442	0.00169249	0.0873195	0.0204799
chr9	14837556	14837655	4280090	0	-	0.343434	(0.33,0.36]	chr9	408973	122	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	95	2	5.81391	5.925655	6.0374	0.0113089	0.00200357	0.0722887	0.0230381
chr4	151138635	151138726	2350645	0	-	0.505495	(0.485,0.523]	chr4	235015	4	INTRON	INTRON	SH3D19	ENSG00000109686.19	ENST00000409598.8:ENST00000604030.7:ENST00000304527.8:ENST00000409252.6:ENST00000514152.5:ENST00000478503.6:ENST00000652233.1:ENST00000427414.2:ENST00000508492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	93	2	5.9104	5.925355	5.94031	0.0119344	0.00107389	0.0741726	0.0148869
chr12	101736697	101736796	5307943	0	+	0.373737	(0.36,0.39]	chr12	517115	57	INTRON	INTRON	CHPT1	ENSG00000111666.11	ENST00000546873.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	292	2	4.71952	5.92529	7.13106	0.0019751	1.20738e-4	0.0278911	0.00316166
chr16	89916218	89916314	6526340	0	+	0.552083	(0.523,0.58]	chr16	647720	7	INTRON	INTRON	ENSG00000267048:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000555427.1:ENST00000639847.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	0	98	2	5.35124	5.9252400000000005	6.49924	0.0295772	2.16101e-4	0.116079	0.00477041
chr17	44206400	44206498	6911335	0	-	0.479592	(0.45,0.485]	chr17	703607	15	UTR3	UTR3:EXON_MRNA	UBTF	ENSG00000108312.15	ENST00000302904.8:ENST00000343638.9:ENST00000436088.6	protein_coding	protein_coding	protein_coding	protein_coding	2	344	2	3.81612	5.9251499999999995	8.03418	0.00637076	2.59459e-6	0.0528562	1.98973e-4
chr16	89298369	89298468	6659789	0	-	0.616162	(0.58,1]	chr16	666648	62	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	90	2	5.66698	5.92474	6.1825	0.0102927	2.66047e-4	0.0684871	0.00556524
chr19	49988692	49988792	7397956	0	-	0.53	(0.523,0.58]	chr19	769507	2	SS3_PROX	SS3_PROX:INTRON	VRK3	ENSG00000105053.11	ENST00000316763.8:ENST00000377011.6:ENST00000599538.5:ENST00000596814.5:ENST00000601341.5:ENST00000594948.5:ENST00000601912.5:ENST00000594092.5:ENST00000593912.5:ENST00000600284.5:ENST00000593919.5:ENST00000594090.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	95	2	5.51247	5.924625000000001	6.33678	0.0230387	3.44853e-4	0.102982	0.00672121
chr4	2826234	2826324	2000381	0	+	0.566667	(0.523,0.58]	chr4	203974	7	INTRON	INTRON	SH3BP2	ENSG00000087266.17	ENST00000503393.8:ENST00000504294.5:ENST00000508385.5:ENST00000511663.5:ENST00000512014.5:ENST00000435136.8:ENST00000511185.5:ENST00000511747.6:ENST00000356331.9:ENST00000515737.5:ENST00000515183.5:ENST00000505941.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	95	2	5.51247	5.924625000000001	6.33678	0.0230387	3.44853e-4	0.102982	0.00672121
chr19	5817694	5817793	7195563	0	+	0.454545	(0.45,0.485]	chr19	733105	119	INTRON	INTRON	NRTN	ENSG00000171119.3	ENST00000303212.3	protein_coding	protein_coding	protein_coding	protein_coding	1	207	2	4.76856	5.92462	7.08068	0.00166658	3.08736e-4	0.0252632	0.00621118
chr21	42847047	42847146	7675442	0	-	0.282828	[0,0.29]	chr21	802287	34	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	0	100	2	5.20713	5.924325	6.64152	0.0248721	1.11996e-4	0.10758	0.00298349
chr17	242237	242336	6820692	0	-	0.363636	(0.36,0.39]	chr17	689558	78	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000570893.5:ENST00000576001.5:ENST00000570954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	96	2	5.6023	5.92425	6.2462	0.0258522	7.62178e-4	0.109555	0.0117554
chr16	85456408	85456508	6517635	0	+	0.54	(0.523,0.58]	chr16	646391	971	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.49322	5.924055	6.35489	0.00549977	0.00324246	0.0489559	0.0319521
chr9	41924690	41924788	4310206	0	-	0.397959	(0.39,0.419]	chr9	412119	2	INTRON	INTRON	CNTNAP3B	ENSG00000154529.15	ENST00000612828.4:ENST00000377561.7:ENST00000619138.4:ENST00000618777.4:ENST00000479351.5:ENST00000489789.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	102	2	5.45246	5.923985	6.39551	0.00743138	0.00529344	0.057548	0.044517
chr16	85592427	85592527	6518997	0	+	0.58	(0.523,0.58]	chr16	646396	357	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	95	2	5.69834	5.9239250000000006	6.14951	0.00793972	0.00194036	0.0596361	0.0225083
chr21	45433344	45433444	7630596	0	+	0.57	(0.523,0.58]	chr21	797656	275	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	95	2	5.69834	5.9239250000000006	6.14951	0.00793972	0.00194036	0.0596361	0.0225083
chr2	222914422	222914521	1038245	0	+	0.484848	(0.45,0.485]	chr2	113229	28	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000542810.1:ENST00000540115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	1066	2	4.92878	5.9237649999999995	6.91875	3.01802e-5	1.42938e-5	0.00309439	6.59187e-4
chr10	132688791	132688891	4618352	0	+	0.51	(0.485,0.523]	chr10	441157	379	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	0	99	2	5.30837	5.9236249999999995	6.53888	0.0314138	2.02788e-4	0.12069	0.0045746
chr15	34554654	34554754	6218165	0	-	0.47	(0.45,0.485]	chr15	612407	3	INTRON	INTRON	GOLGA8B	ENSG00000215252.12	ENST00000683415.1:ENST00000569100.5:ENST00000484716.5:ENST00000564575.5:ENST00000566091.5:ENST00000566258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	94	2	5.86106	5.923535	5.98601	0.0119228	0.00153611	0.0741726	0.0191553
chr16	85433317	85433417	6517404	0	+	0.43	(0.419,0.45]	chr16	646391	740	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	104	2	5.39934	5.92341	6.44748	0.00782663	0.00646489	0.0592048	0.0503748
chr7	97135587	97135687	3422933	0	+	0.41	(0.39,0.419]	chr7	330493	173	INTRON	INTRON	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000489852.1:ENST00000360382.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	99	2	5.57892	5.923375	6.26783	0.00920367	0.00396694	0.0644228	0.0368027
chr6	63658570	63658670	2934491	0	+	0.28	[0,0.29]	chr6	288800	114	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	91	2	5.76264	5.92314	6.08364	0.00936955	5.75832e-4	0.0652356	0.00963379
chr11	70811868	70811968	5062402	0	-	0.4	(0.39,0.419]	chr11	492713	43	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	96	2	5.76778	5.92282	6.07786	0.012565	0.0025422	0.0761905	0.0271978
chr5	126798794	126798894	2526431	0	+	0.38	(0.36,0.39]	chr5	250720	206	INTRON	INTRON	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000492190.5:ENST00000395354.1:ENST00000463908.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	95	2	5.70457	5.922655000000001	6.14074	0.022152	0.0010006	0.101784	0.0142243
chr19	56405246	56405345	7294717	0	+	0.474747	(0.45,0.485]	chr19	751199	4	INTRON	INTRON	ZNF583	ENSG00000198440.9	ENST00000588635.1:ENST00000291598.11:ENST00000537943.5:ENST00000539211.6:ENST00000333201.13:ENST00000391778.3:ENST00000436972.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	98	2	5.38503	5.922610000000001	6.46019	0.0308908	3.07362e-4	0.119556	0.00618726
chr7	105936075	105936175	3444122	0	+	0.45	(0.419,0.45]	chr7	333440	120	INTRON	INTRON	CDHR3	ENSG00000128536.16	ENST00000470188.5:ENST00000488386.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	97	2	5.55739	5.922255	6.28712	0.0310506	7.76382e-4	0.119758	0.0118807
chr4	39867795	39867888	2218028	0	-	0.322581	(0.29,0.33]	chr4	224111	4	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000507020.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	93	2	5.69884	5.92176	6.14468	0.0155382	6.61382e-4	0.0849828	0.0106558
chr1	246123498	246123598	702017	0	-	0.51	(0.485,0.523]	chr1	82410	272	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	97	2	5.57523	5.92143	6.26763	0.00639185	0.00274261	0.0529032	0.028553
chr8	80147649	80147749	4005865	0	-	0.52	(0.485,0.523]	chr8	382863	274	INTRON	INTRON	TPD52	ENSG00000076554.16	ENST00000518937.6:ENST00000379096.9:ENST00000519303.6:ENST00000521354.5:ENST00000518517.5:ENST00000521241.6:ENST00000523753.5:ENST00000519250.5:ENST00000520795.5:ENST00000521561.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	97	2	5.57523	5.92143	6.26763	0.00639185	0.00274261	0.0529032	0.028553
chr9	108900675	108900775	4362798	0	-	0.34	(0.33,0.36]	chr9	416548	3	SS3_PROX	SS3_PROX:INTRON	ELP1	ENSG00000070061.16	ENST00000675765.1:ENST00000374647.10:ENST00000675078.1:ENST00000674948.1:ENST00000676121.1:ENST00000676429.1:ENST00000674704.1:ENST00000674938.1:ENST00000675602.1:ENST00000675215.1:ENST00000676044.1:ENST00000675979.1:ENST00000675325.1:ENST00000495759.6:ENST00000675893.1:ENST00000675943.1:ENST00000675535.1:ENST00000674890.1:ENST00000675233.1:ENST00000676086.1:ENST00000674836.1:ENST00000675406.1:ENST00000675748.1:ENST00000675400.1:ENST00000676237.1:ENST00000675825.1:ENST00000676424.1:ENST00000675647.1:ENST00000675877.1:ENST00000676416.1:ENST00000675052.1:ENST00000674535.1:ENST00000537196.1:ENST00000675566.1:ENST00000675507.1:ENST00000675727.1:ENST00000675711.1:ENST00000675458.1:ENST00000675335.1:ENST00000675321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	108	2	5.0592	5.921345	6.78349	0.0504445	1.50436e-4	0.148216	0.00368673
chr22	36001249	36001349	7805554	0	-	0.34	(0.33,0.36]	chr22	817798	397	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1	protein_coding	protein_coding	protein_coding	protein_coding	0	94	2	5.74693	5.92126	6.09559	0.0181681	9.809e-4	0.0921579	0.0140347
chr7	157381754	157381852	3522172	0	+	0.469388	(0.45,0.485]	chr7	340182	38	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000441291.5:ENST00000412557.5:ENST00000634080.1:ENST00000468928.5:ENST00000465908.5:ENST00000487480.1:ENST00000486247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	207	2	5.04227	5.9207350000000005	6.7992	0.00282996	1.38139e-4	0.033746	0.00347303
chr16	85229165	85229265	6515360	0	+	0.71	(0.58,1]	chr16	646377	14	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	109	2	5.08534	5.920695	6.75605	0.00549379	0.00112759	0.0454065	0.0202727
chr3	123072873	123072973	1546164	0	+	0.47	(0.45,0.485]	chr3	164134	49	INTRON	INTRON	PDIA5	ENSG00000065485.20	ENST00000316218.12:ENST00000489923.5:ENST00000484644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	207	2	4.72263	5.920585	7.11854	0.00155043	3.52511e-4	0.0243127	0.00680884
chr13	113349749	113349849	5753430	0	-	0.61	(0.58,1]	chr13	564102	44	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.82964	5.92049	6.01134	0.00531709	7.58111e-4	0.047841	0.0117078
chr1	9294049	9294144	19594	0	+	0.463158	(0.45,0.485]	chr1	2201	6	INTRON	INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11	protein_coding	protein_coding	protein_coding	protein_coding	0	94	2	5.64922	5.92036	6.1915	0.020599	6.44145e-4	0.0982852	0.0104271
chr1	1053363	1053460	1298	0	+	0.618557	(0.58,1]	chr1	283	15	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	230	2	4.90058	5.92021	6.93984	8.93566e-4	2.32442e-5	0.017813	9.36605e-4
chr13	98246503	98246603	5634696	0	+	0.41	(0.39,0.419]	chr13	553480	13	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	1	303	2	5.23637	5.920165	6.60396	0.00121858	2.96245e-4	0.0211596	0.00602194
chr6	64368112	64368212	3165311	0	-	0.46	(0.45,0.485]	chr6	308311	607	INTRON	INTRON	EYS	ENSG00000188107.15	ENST00000503581.6:ENST00000370621.7	protein_coding	protein_coding	protein_coding	protein_coding	0	107	2	5.06138	5.9201049999999995	6.77883	0.0492008	1.23522e-4	0.146142	0.00321265
chr3	187024958	187025058	1651232	0	+	0.48	(0.45,0.485]	chr3	173661	1	SS5_PROX	SS5_PROX:INTRON	ST6GAL1	ENSG00000073849.16	ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5:ENST00000438590.5:ENST00000448408.5:ENST00000676633.1:ENST00000440338.5:ENST00000448044.5:ENST00000416235.6	protein_coding	protein_coding	protein_coding	protein_coding	0	120	2	4.95056	5.92006	6.88956	0.0127826	0.00239127	0.0773423	0.0308863
chr1	112704997	112705052	563017	0	-	0.6	(0.58,1]	chr1	64616	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RHOC	ENSG00000155366.17	ENST00000369633.6:ENST00000369642.7:ENST00000339083.12:ENST00000285735.6:ENST00000468093.5:ENST00000369638.6:ENST00000369637.5:ENST00000369636.6:ENST00000484280.6:ENST00000369632.6:ENST00000425265.6:ENST00000436685.6:ENST00000528831.5:ENST00000484054.3:ENST00000478447.1:ENST00000527563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	95	2	5.50497	5.91967	6.33437	0.00276493	0.00187297	0.0332418	0.0219434
chr11	68351610	68351709	4882474	0	+	0.646465	(0.58,1]	chr11	470548	30	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	95	2	5.50497	5.91967	6.33437	0.00276493	0.00187297	0.0332418	0.0219434
chr14	104890932	104891029	5926135	0	+	0.618557	(0.58,1]	chr14	579999	8	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	95	2	5.50497	5.91967	6.33437	0.00276493	0.00187297	0.0332418	0.0219434
chr16	85373842	85373942	6516809	0	+	0.72	(0.58,1]	chr16	646391	145	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	95	2	5.50497	5.91967	6.33437	0.00276493	0.00187297	0.0332418	0.0219434
chr14	37596607	37596707	5786935	0	+	0.44	(0.419,0.45]	chr14	567058	2	INTRON	INTRON	TTC6	ENSG00000139865.17	ENST00000553443.6	protein_coding	protein_coding	protein_coding	protein_coding	0	95	2	5.82136	5.9196550000000006	6.01795	0.0210659	0.00152916	0.0996078	0.0191213
chr12	26613456	26613556	5399372	0	-	0.38	(0.36,0.39]	chr12	528591	104	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	0	95	2	5.67128	5.919560000000001	6.16784	0.023302	9.334e-4	0.103669	0.0135546
chr4	151200157	151200257	2351281	0	-	0.35	(0.33,0.36]	chr4	235096	123	INTRON	INTRON	SH3D19	ENSG00000109686.19	ENST00000409598.8:ENST00000604030.7:ENST00000304527.8:ENST00000409252.6:ENST00000514152.5:ENST00000652233.1:ENST00000604440.5:ENST00000474743.5:ENST00000514013.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	209	2	4.79926	5.919415000000001	7.03957	0.0018891	3.20682e-4	0.0271118	0.00636761
chrX	19732564	19732664	7991363	0	-	0.38	(0.36,0.39]	chrX	836056	252	INTRON	INTRON	SH3KBP1	ENSG00000147010.18	ENST00000397821.8:ENST00000379698.8:ENST00000379726.7:ENST00000379697.7:ENST00000432234.5:ENST00000431164.1	protein_coding	protein_coding	protein_coding	protein_coding	0	95	2	5.83748	5.9192350000000005	6.00099	0.0139273	0.00213426	0.0805916	0.0240825
chr6	128302954	128303054	3254992	0	-	0.35	(0.33,0.36]	chr6	315203	600	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000531050.5:ENST00000524534.5:ENST00000490332.2:ENST00000495748.5:ENST00000429595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	94	2	5.88143	5.91883	5.95623	0.0129408	0.00169367	0.0775979	0.0204799
chr16	89291382	89291481	6659717	0	-	0.606061	(0.58,1]	chr16	666641	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	190	2	5.2395	5.918815	6.59813	0.00158605	3.37223e-5	0.0245893	0.0012296
chr18	77018477	77018577	7180499	0	-	0.49	(0.485,0.523]	chr18	730157	8	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000580402.5:ENST00000580473.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000495162.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	104	2	5.30159	5.91833	6.53507	0.00529578	0.00392199	0.044517	0.0404814
chr17	60475575	60475674	6939214	0	-	0.393939	(0.39,0.419]	chr17	707510	67	INTRON	INTRON	APPBP2	ENSG00000062725.10	ENST00000083182.8:ENST00000589341.5:ENST00000590244.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	96	2	5.56518	5.918005	6.27083	0.027797	7.20415e-4	0.112962	0.0112959
chr13	33262560	33262660	5685223	0	-	0.47	(0.45,0.485]	chr13	558196	567	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	547	2	5.4694	5.91779	6.36618	6.06689e-4	2.18121e-6	0.0144497	1.76627e-4
chr11	73330525	73330625	4890024	0	+	0.62	(0.58,1]	chr11	471958	183	INTRON	INTRON	ARHGEF17	ENSG00000110237.5	ENST00000263674.4:ENST00000544519.1	protein_coding	protein_coding	protein_coding	protein_coding	0	91	2	5.71628	5.917465	6.11865	0.00429384	0.00104668	0.042386	0.0146403
chr17	43546614	43546714	6739031	0	+	0.59	(0.58,1]	chr17	678633	14	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	91	2	5.71628	5.917465	6.11865	0.00429384	0.00104668	0.042386	0.0146403
chr11	95910109	95910209	5109736	0	-	0.43	(0.419,0.45]	chr11	496507	1	SS5_PROX	SS5_PROX:INTRON	MTMR2	ENSG00000087053.20	ENST00000675896.1:ENST00000346299.10:ENST00000675495.1:ENST00000676272.1:ENST00000675910.1:ENST00000393223.8:ENST00000676177.1:ENST00000675022.1:ENST00000675362.1:ENST00000674974.1:ENST00000675320.1:ENST00000675174.1:ENST00000674950.1:ENST00000674989.1:ENST00000675030.1:ENST00000676388.1:ENST00000675848.1:ENST00000675652.1:ENST00000676146.1:ENST00000675922.1:ENST00000676268.1:ENST00000675024.1:ENST00000675767.1:ENST00000676432.1:ENST00000676027.1:ENST00000675196.1:ENST00000675957.1:ENST00000675981.1:ENST00000674924.1:ENST00000676166.1:ENST00000676440.1:ENST00000675454.1:ENST00000674968.1:ENST00000676378.1:ENST00000675288.1:ENST00000675636.1:ENST00000675237.1:ENST00000674528.1:ENST00000675477.1:ENST00000674901.1:ENST00000675034.1:ENST00000676393.1:ENST00000675413.1:ENST00000675933.1:ENST00000675660.1:ENST00000674610.1:ENST00000409459.5:ENST00000352297.11:ENST00000675807.1:ENST00000675489.1:ENST00000676261.1:ENST00000481642.6:ENST00000495134.6:ENST00000484818.6:ENST00000470293.6:ENST00000497683.6:ENST00000444541.7:ENST00000470011.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	108	2	5.25615	5.91714	6.57813	0.00879729	0.00629696	0.0615125	0.0523832
chr20	32480980	32481079	7543678	0	-	0.545455	(0.523,0.58]	chr20	787372	59	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	226	2	4.1892	5.916905	7.64461	0.00138633	4.50547e-4	0.0179017	0.0121972
chr16	3065826	3065926	6376267	0	+	0.58	(0.523,0.58]	chr16	630282	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	IL32	ENSG00000008517.19	ENST00000325568.9:ENST00000613483.4:ENST00000534507.5:ENST00000396887.7:ENST00000531965.5:ENST00000532086.1:ENST00000529699.5:ENST00000440815.7:ENST00000526464.6:ENST00000529550.5:ENST00000551122.5:ENST00000548807.5:ENST00000528163.6:ENST00000444393.7:ENST00000530890.5:ENST00000533097.6:ENST00000008180.13:ENST00000534748.6:ENST00000396890.6:ENST00000532247.5:ENST00000548652.5:ENST00000525643.7:ENST00000525228.5:ENST00000525377.6:ENST00000530538.6:ENST00000549213.5:ENST00000548476.5:ENST00000552936.5:ENST00000552664.5:ENST00000552356.5:ENST00000551513.5:ENST00000382213.7:ENST00000548246.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	95	2	5.65959	5.91671	6.17383	0.00760615	0.0021416	0.0579698	0.0240825
chr1	43964521	43964621	110806	0	+	0.63	(0.58,1]	chr1	13722	2	SS5_PROX	SS5_PROX:INTRON	IPO13	ENSG00000117408.11	ENST00000372343.8	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.86491	5.916525	5.96814	0.00707578	5.06433e-4	0.0558168	0.00881473
chr20	34073462	34073562	7460407	0	+	0.51	(0.485,0.523]	chr20	776609	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000413297.5:ENST00000246194.8:ENST00000333552.9:ENST00000442805.1:ENST00000493399.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	270	2	4.52978	5.916404999999999	7.30303	8.89361e-4	1.40907e-4	0.0177608	0.00351423
chr19	4493009	4493105	7193766	0	+	0.5	(0.485,0.523]	chr19	732770	8	INTRON	INTRON	HDGFL2	ENSG00000167674.15	ENST00000616600.5:ENST00000621835.4:ENST00000589486.5:ENST00000615225.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	94	2	5.73251	5.916275000000001	6.10004	0.00860355	0.00184599	0.0623467	0.0217471
chr10	45856793	45856892	4678137	0	-	0.484848	(0.45,0.485]	chr10	446183	15	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000610690.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	0	94	2	5.61431	5.916205	6.2181	0.0217589	5.99406e-4	0.100615	0.00993857
chr16	24985297	24985397	6570787	0	-	0.47	(0.45,0.485]	chr16	655806	59	INTRON	INTRON	ARHGAP17	ENSG00000140750.17	ENST00000289968.11:ENST00000303665.9:ENST00000575975.5:ENST00000455311.6:ENST00000571480.5:ENST00000573625.5:ENST00000573449.5:ENST00000575447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	94	2	5.61431	5.916205	6.2181	0.0217589	5.99406e-4	0.100615	0.00993857
chr16	81544181	81544281	6508735	0	+	0.53	(0.523,0.58]	chr16	645911	483	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	245	2	4.59372	5.91616	7.2386	0.0030293299999999998	2.29668e-5	0.0350226	9.29664e-4
chr6	128515529	128515629	3257126	0	-	0.34	(0.33,0.36]	chr6	315230	233	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000524534.5:ENST00000525459.1:ENST00000392449.4:ENST00000532751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	95	2	5.74308	5.916085	6.08909	0.0103694	0.00238447	0.0686683	0.0260514
chr8	51862338	51862437	3974437	0	-	0.353535	(0.33,0.36]	chr8	380272	7	INTRON	INTRON	PCMTD1	ENSG00000168300.14	ENST00000544451.2:ENST00000360540.9:ENST00000522514.6:ENST00000519559.1:ENST00000521344.1:ENST00000521046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	96	2	5.66858	5.91594	6.1633	0.00914439	0.0028562	0.0642449	0.0294256
chr19	35003225	35003325	7244892	0	+	0.49	(0.485,0.523]	chr19	742072	4	SS5_PROX	SS5_PROX:INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	268	2	5.07586	5.9159299999999995	6.756	0.00115702	1.07056e-4	0.0205679	0.00288045
chr13	112526342	112526441	5752176	0	-	0.494949	(0.485,0.523]	chr13	563913	35	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000462580.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	95	2	5.47425	5.915889999999999	6.35753	0.0243396	3.41236e-4	0.106588	0.00667174
chr19	49796491	49796588	7283447	0	+	0.587629	(0.58,1]	chr19	748939	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	AP2A1	ENSG00000196961.13	ENST00000354293.10:ENST00000600199.1:ENST00000359032.9:ENST00000597774.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	90	2	5.79283	5.91588	6.03893	0.00503456	8.4246e-4	0.0464858	0.0125912
chr13	77227433	77227531	5733508	0	-	0.397959	(0.39,0.419]	chr13	562222	15	INTRON	INTRON	MYCBP2	ENSG00000005810.20	ENST00000683823.1:ENST00000684354.1:ENST00000682321.1:ENST00000695079.1:ENST00000683697.1:ENST00000357337.11:ENST00000544440.7:ENST00000695080.1:ENST00000695081.1:ENST00000695090.1:ENST00000695091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	285	2	4.49605	5.91541	7.33477	0.00139992	2.32225e-4	0.0228907	0.0050214
chr3	16345219	16345318	1420580	0	+	0.414141	(0.39,0.419]	chr3	152554	55	INTRON	INTRON	OXNAD1	ENSG00000154814.14	ENST00000606098.1	protein_coding	protein_coding	protein_coding	protein_coding	1	215	2	4.59477	5.9153199999999995	7.23587	0.00168028	6.29597e-4	0.0253887	0.0102619
chr5	132912873	132912972	2762857	0	-	0.353535	(0.33,0.36]	chr5	270833	81	INTRON	INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10:ENST00000378595.7:ENST00000425658.1:ENST00000378593.6:ENST00000477369.5:ENST00000491831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	104	2	5.32491	5.915039999999999	6.50517	0.00634179	0.0050376	0.0501889	0.0464868
chr2	98488971	98489071	855801	0	+	0.49	(0.485,0.523]	chr2	96866	435	INTRON	INTRON	INPP4A	ENSG00000040933.16	ENST00000409016.8:ENST00000409851.8:ENST00000074304.9:ENST00000409463.5:ENST00000409540.7	protein_coding	protein_coding	protein_coding	protein_coding	1	210	2	4.47284	5.9149899999999995	7.35714	7.98038e-4	6.43746e-4	0.0167692	0.0104271
chr11	846471	846570	4786129	0	+	0.636364	(0.58,1]	chr11	458422	15	INTRON	INTRON	TSPAN4	ENSG00000214063.12	ENST00000397411.6:ENST00000397396.5:ENST00000397397.7:ENST00000397408.5:ENST00000530404.5:ENST00000525334.5:ENST00000397406.5:ENST00000409543.6:ENST00000525201.5:ENST00000397404.5	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.63543	5.914815000000001	6.1942	0.00368616	0.00131165	0.0389784	0.0171898
chr3	111751088	111751188	1534461	0	+	0.37	(0.36,0.39]	chr3	162941	180	INTRON	INTRON	PLCXD2:PHLDB2	ENSG00000240891.8:ENSG00000144824.21	ENST00000393934.7:ENST00000477665.2:ENST00000474484.1:ENST00000393923.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	113	2	5.10608	5.9148	6.72352	0.0111429	0.00411221	0.071709	0.0414433
chr16	20904710	20904809	6418006	0	+	0.383838	(0.36,0.39]	chr16	634694	16	INTRON	INTRON	LYRM1	ENSG00000102897.10	ENST00000568663.5:ENST00000412082.6:ENST00000439021.5:ENST00000567165.5:ENST00000569023.5:ENST00000568820.5:ENST00000562740.5:ENST00000219168.8:ENST00000567954.6:ENST00000396052.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	215	2	5.10607	5.914795	6.72352	0.00411221	1.49522e-4	0.0414433	0.00367667
chr19	46978291	46978391	7275356	0	+	0.48	(0.45,0.485]	chr19	747275	405	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	93	2	5.74913	5.914515	6.0799	0.017574	8.68466e-4	0.0906595	0.0128564
chr1	117370685	117370785	219425	0	+	0.38	(0.36,0.39]	chr1	24263	18	INTRON	INTRON	MAN1A2	ENSG00000198162.12	ENST00000356554.7:ENST00000482811.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	94	2	5.83054	5.913805	5.99707	0.0182399	0.00143949	0.0921579	0.0183435
chr4	159104431	159104531	2157987	0	+	0.53	(0.523,0.58]	chr4	218657	2	SS5_PROX	SS5_PROX:INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	92	2	5.82039	5.9137	6.00701	0.0139724	8.61362e-4	0.0805959	0.0127848
chr11	70740885	70740985	5061690	0	-	0.57	(0.523,0.58]	chr11	492701	230	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	273	2	4.20906	5.91367	7.61828	4.75424e-4	3.59902e-4	0.0125953	0.00693803
chr10	102647018	102647118	4576494	0	+	0.55	(0.523,0.58]	chr10	437280	8	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	203	2	4.66305	5.913425	7.1638	0.00118398	3.60484e-4	0.020806	0.00694446
chr7	892518	892618	3307709	0	+	0.53	(0.523,0.58]	chr7	320473	1	SS5_PROX	SS5_PROX:INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000407192.5:ENST00000464468.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	92	2	5.78924	5.9134	6.03756	0.0147166	7.92905e-4	0.0826843	0.0120621
chr1	31937554	31937654	437549	0	-	0.57	(0.523,0.58]	chr1	52119	4	SS5_PROX	SS5_PROX:INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	98	2	5.49322	5.91334	6.33346	0.00571732	0.00324246	0.0498083	0.0319521
chr7	105122796	105122895	3665299	0	-	0.434343	(0.419,0.45]	chr7	353636	44	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000465072.5:ENST00000393651.8:ENST00000357311.7:ENST00000466917.1:ENST00000485455.1:ENST00000477925.5:ENST00000489828.5:ENST00000474770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	95	2	5.86184	5.913295	5.96475	0.0169309	0.00223565	0.088829	0.024843
chrX	47237777	47237876	7877984	0	+	0.464646	(0.45,0.485]	chrX	825761	35	INTRON	INTRON	USP11	ENSG00000102226.10	ENST00000218348.7:ENST00000478596.5:ENST00000377107.7:ENST00000469080.5:ENST00000377080.7:ENST00000377078.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	207	2	4.65902	5.91327	7.16752	0.0014116	4.2306e-4	0.0229261	0.00776857
chr5	38484181	38484274	2640528	0	-	0.580645	(0.58,1]	chr5	262243	12	INTRON	INTRON	LIFR	ENSG00000113594.10	ENST00000453190.7:ENST00000263409.8	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.70191	5.913175	6.12444	0.00964351	3.17437e-4	0.0659937	0.00632787
chr10	63263950	63264050	4698056	0	-	0.38	(0.36,0.39]	chr10	447720	436	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	98	2	5.57948	5.913125	6.24677	0.00931845	0.00393844	0.0649153	0.0367306
chr1	183071175	183071274	300344	0	+	0.414141	(0.39,0.419]	chr1	34079	467	INTRON	INTRON	LAMC1	ENSG00000135862.6	ENST00000258341.5	protein_coding	protein_coding	protein_coding	protein_coding	0	102	2	5.24182	5.91291	6.584	0.0441194	3.12789e-4	0.140174	0.00625974
chr4	1325081	1325178	1995289	0	+	0.639175	(0.58,1]	chr4	203264	11	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	186	2	5.0207	5.912884999999999	6.80507	0.00101308	7.05166e-5	0.0191342	0.00211595
chr5	301980	302079	2377942	0	+	0.565657	(0.523,0.58]	chr5	237467	252	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	248	2	4.72466	5.9127	7.10074	0.00234551	3.53278e-5	0.0305046	0.00126913
chr16	31757684	31757783	6441095	0	+	0.414141	(0.39,0.419]	chr16	638752	21	UTR3	UTR3:EXON_MRNA:INTRON	KRBOX5	ENSG00000197302.11	ENST00000539915.5:ENST00000316491.14:ENST00000529515.2:ENST00000534277.5:ENST00000531864.6:ENST00000689850.1:ENST00000534369.1:ENST00000542684.5:ENST00000544044.1:ENST00000692451.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	94	2	5.85902	5.91249	5.96596	0.0177874	0.00156652	0.0914273	0.0194594
chr1	246738892	246738989	374093	0	+	0.371134	(0.36,0.39]	chr1	42112	25	INTRON	INTRON	SCCPDH	ENSG00000143653.10	ENST00000366510.4	protein_coding	protein_coding	protein_coding	protein_coding	0	94	2	5.88962	5.912475000000001	5.93533	0.0166261	0.00167855	0.0884836	0.0203806
chr8	124660315	124660415	4064260	0	-	0.37	(0.36,0.39]	chr8	387128	410	INTRON	INTRON	MTSS1	ENSG00000170873.19	ENST00000518547.6:ENST00000378017.7:ENST00000325064.9:ENST00000522162.1:ENST00000529463.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	94	2	5.88962	5.912475000000001	5.93533	0.0166261	0.00167855	0.0884836	0.0203806
chr5	59065097	59065197	2664764	0	-	0.37	(0.36,0.39]	chr5	264267	257	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000503258.5:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	96	2	5.69574	5.912425	6.12911	0.0113159	0.00299965	0.0722887	0.030427
chr3	15098534	15098614	1694738	0	-	0.5625	(0.523,0.58]	chr3	177105	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBSN	ENSG00000131381.12	ENST00000253699.7:ENST00000476527.6:ENST00000449964.6:ENST00000441057.5:ENST00000449050.5:ENST00000507357.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	92	2	5.88072	5.912305	5.94389	0.0126258	0.0010207	0.0761905	0.0143498
chr3	123072773	123072873	1546163	0	+	0.51	(0.485,0.523]	chr3	164134	48	INTRON	INTRON	PDIA5	ENSG00000065485.20	ENST00000316218.12:ENST00000489923.5:ENST00000484644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	248	2	4.1411	5.912245	7.68339	0.00711965	5.97548e-6	0.0560147	3.5765e-4
chr2	77142390	77142490	1199448	0	-	0.42	(0.419,0.45]	chr2	130007	3931	INTRON	INTRON	LRRTM4	ENSG00000176204.14	ENST00000409884.6:ENST00000409911.5:ENST00000409093.1	protein_coding	protein_coding	protein_coding	protein_coding	0	135	2	4.7145	5.911995	7.10949	0.0256236	0.00251897	0.115966	0.031696
chr17	82718343	82718443	6818061	0	+	0.57	(0.523,0.58]	chr17	689121	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	201	2	4.76064	5.911945	7.06325	0.0014427	2.70171e-4	0.023287	0.00563203
chr1	90817906	90818005	524306	0	-	0.252525	[0,0.29]	chr1	61741	94	INTRON	INTRON	LINC02609	ENSG00000233593.11	ENST00000671059.1:ENST00000659034.2:ENST00000669273.1:ENST00000657053.2:ENST00000635581.3:ENST00000634619.2:ENST00000668679.1:ENST00000435649.3:ENST00000653770.2	lncRNA	lncRNA	lncRNA	lncRNA	0	102	2	5.27002	5.9119150000000005	6.55381	0.0048238	0.00195679	0.0417661	0.0277072
chr16	89439913	89440013	6661233	0	-	0.57	(0.523,0.58]	chr16	666753	82	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	94	2	5.69834	5.91156	6.12478	0.00829271	0.00194036	0.0610772	0.0225083
chr6	57165931	57166031	2929810	0	+	0.4	(0.39,0.419]	chr6	288558	44	INTRON	INTRON	ZNF451	ENSG00000112200.17	ENST00000357489.7:ENST00000370706.9:ENST00000504603.1:ENST00000504364.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	94	2	5.88826	5.91151	5.93476	0.0169925	0.00169249	0.0889149	0.0204799
chr10	1010080	1010159	4437454	0	+	0.468354	(0.45,0.485]	chr10	424699	1	SS3_PROX	SS3_PROX:INTRON	GTPBP4	ENSG00000107937.19	ENST00000360803.9:ENST00000491635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	94	2	5.57854	5.91138	6.24422	0.0230065	5.58345e-4	0.102982	0.00944382
chr14	75645024	75645121	5887210	0	+	0.515464	(0.485,0.523]	chr14	574978	28	INTRON	INTRON	FLVCR2:TTLL5	ENSG00000119686.10:ENSG00000119685.20	ENST00000238667.9:ENST00000554496.1:ENST00000555385.1:ENST00000539311.5:ENST00000556241.5:ENST00000553587.5:ENST00000556856.1:ENST00000555027.1:ENST00000554132.1:ENST00000556265.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	92	2	5.75784	5.91086	6.06388	0.0154142	7.70737e-4	0.0849828	0.0118331
chr16	81629586	81629686	6509593	0	+	0.58	(0.523,0.58]	chr16	645926	75	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.72487	5.910825	6.09678	0.0163679	6.74499e-4	0.0875379	0.0108081
chr6	159981088	159981188	3065385	0	+	0.57	(0.523,0.58]	chr6	297908	113	INTRON	INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	92	2	5.72487	5.910825	6.09678	0.0163679	6.74499e-4	0.0875379	0.0108081
chr1	43980614	43980714	110962	0	+	0.56	(0.523,0.58]	chr1	13805	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	B4GALT2	ENSG00000117411.18	ENST00000498543.1:ENST00000434555.7:ENST00000372324.6:ENST00000481924.2:ENST00000497866.6:ENST00000485678.6:ENST00000356836.10:ENST00000309519.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	92	2	5.90997	5.91062	5.91127	0.012016	0.00111349	0.0743424	0.0152496
chr18	74622982	74623082	7089501	0	+	0.43	(0.419,0.45]	chr18	722412	247	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000582337.5	protein_coding	protein_coding	protein_coding	protein_coding	0	95	2	5.66212	5.9104600000000005	6.1588	0.0266819	0.00107628	0.111563	0.0148869
chr17	80274993	80275092	6807314	0	+	0.565657	(0.523,0.58]	chr17	687364	12	INTRON	INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000319921.4	protein_coding	protein_coding	protein_coding	protein_coding	0	93	2	5.77287	5.910395	6.04792	0.00948306	0.00160162	0.0656057	0.0197827
chr20	33661260	33661351	7546035	0	-	0.582418	(0.58,1]	chr20	787635	5	INTRON	INTRON	NECAB3	ENSG00000125967.17	ENST00000375238.8:ENST00000246190.11:ENST00000488489.5:ENST00000606525.5:ENST00000483813.5:ENST00000485399.5:ENST00000485976.5:ENST00000478237.5:ENST00000494174.5:ENST00000463246.5:ENST00000480994.5:ENST00000606690.5:ENST00000439478.5:ENST00000607805.5:ENST00000498353.5:ENST00000493590.1:ENST00000606106.1:ENST00000606699.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	186	2	4.84837	5.91007	6.97177	7.01049e-4	1.2454e-4	0.0156107	0.00322977
chr7	74529133	74529233	3392125	0	+	0.59	(0.58,1]	chr7	327389	46	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6:ENST00000476977.5:ENST00000489094.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	89	2	5.86553	5.910035	5.95454	0.0059453	6.8352e-4	0.0506158	0.0108717
chr3	122496336	122496436	1893351	0	-	0.31	(0.29,0.33]	chr3	192192	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KPNA1	ENSG00000114030.13	ENST00000344337.11:ENST00000485027.5:ENST00000494339.5:ENST00000465882.5:ENST00000482287.5:ENST00000476916.5:ENST00000493510.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	93	2	5.76391	5.90957	6.05523	0.00839544	0.0018044	0.0616149	0.0215053
chr2	36534669	36534768	759444	0	+	0.373737	(0.36,0.39]	chr2	88048	53	INTRON	INTRON	CRIM1	ENSG00000150938.10	ENST00000280527.7	protein_coding	protein_coding	protein_coding	protein_coding	0	103	2	5.36211	5.90941	6.45671	0.00653798	0.00643924	0.0535312	0.0503748
chr8	9770762	9770854	3754883	0	+	0.467391	(0.45,0.485]	chr8	360881	1	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	1	213	2	4.4494	5.909405	7.36941	9.55229e-4	7.63833e-4	0.0184882	0.0117723
chr7	75919396	75919494	3396647	0	+	0.5	(0.485,0.523]	chr7	328048	3	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	332	2	3.85571	5.90927	7.96283	0.00535984	2.40878e-6	0.0481236	1.89153e-4
chr15	57513179	57513279	6115660	0	+	0.4	(0.39,0.419]	chr15	601853	509	INTRON	INTRON	CGNL1	ENSG00000128849.11	ENST00000281282.6	protein_coding	protein_coding	protein_coding	protein_coding	0	97	2	5.61872	5.909105	6.19949	0.0103045	0.00361685	0.0684871	0.0342681
chr19	17145891	17145991	7218905	0	+	0.5	(0.485,0.523]	chr19	737730	4	SS5_PROX	SS5_PROX:INTRON	MYO9B	ENSG00000099331.14	ENST00000682292.1:ENST00000595618.5:ENST00000594824.5:ENST00000397274.6:ENST00000595641.5	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.90769	5.909045	5.9104	0.0119344	0.0011708	0.0741726	0.0157899
chr19	34386196	34386296	7243212	0	+	0.51	(0.485,0.523]	chr19	741718	42	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	103	2	5.30159	5.90888	6.51617	0.00529578	0.00406194	0.044517	0.0413652
chr13	64061173	64061273	5725306	0	-	0.37	(0.36,0.39]	chr13	561442	263	INTRON	INTRON	LINC00355	ENSG00000227674.3	ENST00000650541.1:ENST00000456627.1:ENST00000669788.1:ENST00000654282.1	lncRNA	lncRNA	lncRNA	lncRNA	0	94	2	5.70457	5.90885	6.11313	0.022152	0.00107374	0.101784	0.0148869
chr11	70535330	70535430	5059626	0	-	0.42	(0.419,0.45]	chr11	492663	320	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	261	2	4.40939	5.90857	7.40775	0.00617357	3.58484e-5	0.0519442	0.00128261
chr10	75885224	75885324	4525021	0	+	0.56	(0.523,0.58]	chr10	432292	13	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	92	2	5.69157	5.908535	6.1255	0.0172851	6.23263e-4	0.0897247	0.0101764
chr5	1104400	1104500	2608895	0	-	0.64	(0.58,1]	chr5	259667	98	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	0	94	2	5.50497	5.90845	6.31193	0.00289626	0.00187297	0.03418	0.0219434
chr2	191370492	191370592	977658	0	+	0.47	(0.45,0.485]	chr2	107595	2	SS5_PROX	SS5_PROX:INTRON	MYO1B	ENSG00000128641.19	ENST00000339514.8:ENST00000392318.8:ENST00000304164.8:ENST00000392316.5:ENST00000634375.1	protein_coding	protein_coding	protein_coding	protein_coding	1	204	2	4.81308	5.907465	7.00185	0.00193567	2.71322e-4	0.0275437	0.00564793
chr8	22370035	22370135	3770048	0	+	0.51	(0.485,0.523]	chr8	362721	19	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	5	1157	2	5.87439	5.90717	5.93995	7.30373e-5	8.15477e-7	0.00478408	9.19168e-5
chr3	141268191	141268291	1586591	0	+	0.43	(0.419,0.45]	chr3	167617	51	INTRON	INTRON	PXYLP1	ENSG00000155893.13	ENST00000505013.5:ENST00000636601.1:ENST00000286353.9:ENST00000514880.5:ENST00000637751.1:ENST00000502783.5:ENST00000393010.6:ENST00000514680.5:ENST00000513528.5:ENST00000637579.1:ENST00000512457.5:ENST00000504264.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	95	2	5.62805	5.906725	6.1854	0.0280406	0.00100635	0.113651	0.0142602
chr3	52294774	52294871	1473123	0	+	0.628866	(0.58,1]	chr3	158245	18	UTR3	UTR3:EXON_MRNA	GLYCTK	ENSG00000168237.18	ENST00000436784.7	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.82964	5.90643	5.98322	0.00562007	7.58111e-4	0.0493906	0.0117078
chr18	74916619	74916718	7092448	0	+	0.50505	(0.485,0.523]	chr18	722466	108	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	1	204	2	4.60039	5.906195	7.212	0.00106612	4.46264e-4	0.0196248	0.00807719
chr4	101276543	101276643	2292444	0	-	0.41	(0.39,0.419]	chr4	230565	353	INTRON	INTRON	PPP3CA	ENSG00000138814.17	ENST00000512215.5:ENST00000394854.8:ENST00000323055.10:ENST00000394853.8:ENST00000507176.5:ENST00000529324.5:ENST00000525819.1	protein_coding	protein_coding	protein_coding	protein_coding	1	246	2	5.65962	5.9058399999999995	6.15206	0.0111378	2.9624e-5	0.0715198	0.00111477
chr22	19909884	19909983	7765143	0	-	0.535354	(0.523,0.58]	chr22	813988	105	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	243	2	4.57248	5.90554	7.2386	0.0031568	2.29668e-5	0.035937	9.29664e-4
chr22	28466670	28466770	7779697	0	-	0.53	(0.523,0.58]	chr22	815741	237	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	1	200	2	5.01914	5.90554	6.79194	0.00243746	1.23884e-4	0.0311222	0.00321822
chr2	240625181	240625280	1075195	0	+	0.585859	(0.58,1]	chr2	116654	58	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	1	192	2	4.55404	5.90531	7.25658	3.6888e-4	3.19972e-4	0.0110278	0.00635576
chr1	44247041	44247140	459643	0	-	0.414141	(0.39,0.419]	chr1	55307	46	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	94	2	5.66992	5.905045	6.14017	0.0237738	0.00100955	0.105296	0.0142887
chr8	1781944	1782043	3744392	0	+	0.323232	(0.29,0.33]	chr8	360088	15	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CLN8	ENSG00000182372.10	ENST00000331222.6:ENST00000636934.1:ENST00000635970.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	217	2	4.29471	5.904955	7.5152	0.00110371	4.91293e-4	0.0151788	0.0128672
chr7	129267226	129267326	3475871	0	+	0.42	(0.419,0.45]	chr7	335957	414	INTRON	INTRON	AHCYL2	ENSG00000158467.17	ENST00000325006.8:ENST00000446544.6	protein_coding	protein_coding	protein_coding	protein_coding	1	213	2	4.81589	5.904875	6.99386	0.00308705	3.73447e-4	0.0354967	0.00709972
chr13	75391290	75391390	5727097	0	-	0.42	(0.419,0.45]	chr13	561722	141	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	4	399	2	4.16052	5.904815	7.64911	9.51747e-4	2.30991e-4	0.0184489	0.00499664
chr6	37912073	37912173	2909765	0	+	0.43	(0.419,0.45]	chr6	285643	917	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	1	233	2	5.44192	5.904525	6.36713	0.00893106	6.35148e-5	0.0637469	0.00195296
chr22	21676213	21676312	7690786	0	+	0.444444	(0.419,0.45]	chr22	804829	7	INTRON	INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000458567.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000679586.1:ENST00000680094.1:ENST00000484439.5:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000680022.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	94	2	5.8512	5.904355000000001	5.95751	0.0201381	0.0017735	0.0973365	0.02121
chr7	30074232	30074332	3338043	0	+	0.34	(0.33,0.36]	chr7	323067	1	SS5_PROX	SS5_PROX:INTRON	PLEKHA8	ENSG00000106086.20	ENST00000622102.4:ENST00000258679.11:ENST00000649443.1:ENST00000449726.6:ENST00000396257.6:ENST00000396259.5:ENST00000440706.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	98	2	5.50696	5.90406	6.30116	0.00721369	0.00418696	0.0564903	0.0379935
chr6	142198038	142198138	3011602	0	+	0.45	(0.419,0.45]	chr6	294658	2	SS3_PROX	SS3_PROX:INTRON	VTA1	ENSG00000009844.16	ENST00000452973.6:ENST00000620996.4:ENST00000367621.1:ENST00000367630.9:ENST00000491881.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	98	2	5.57051	5.90403	6.23755	0.0110181	0.00441471	0.0708586	0.0393688
chr17	15468319	15468418	6860118	0	-	0.515152	(0.485,0.523]	chr17	695071	8	INTRON	INTRON	TVP23C-CDRT4:CDRT4	ENSG00000259024.6:ENSG00000239704.11	ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	92	2	5.65791	5.90399	6.15007	0.0181582	6.0909e-4	0.0921579	0.0100377
chr9	124525273	124525373	4402889	0	-	0.49	(0.485,0.523]	chr9	419851	4	SS3_PROX	SS3_PROX:INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.84014	5.9036550000000005	5.96717	0.0108319	0.00139792	0.0707085	0.0179863
chr2	241416871	241416969	1076829	0	+	0.510204	(0.485,0.523]	chr2	116969	31	INTRON	INTRON	FARP2	ENSG00000006607.14	ENST00000264042.8:ENST00000627550.2:ENST00000373287.8:ENST00000471447.5:ENST00000485051.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	93	2	5.73251	5.90347	6.07443	0.00899749	0.00184599	0.0637469	0.0217471
chr9	112221277	112221376	4371110	0	-	0.40404	(0.39,0.419]	chr9	417672	37	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6	protein_coding	protein_coding	protein_coding	protein_coding	4	963	2	5.14252	5.903465000000001	6.66441	7.42766e-5	1.69619e-5	0.00481728	7.46414e-4
chr8	11782906	11783005	3760202	0	+	0.464646	(0.45,0.485]	chr8	361116	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NEIL2	ENSG00000154328.16	ENST00000436750.7:ENST00000455213.6:ENST00000403422.7:ENST00000284503.7:ENST00000528323.5:ENST00000528113.5:ENST00000524741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	93	2	5.61431	5.902905	6.1915	0.0217589	6.44145e-4	0.100615	0.0104271
chr7	152839271	152839370	3518329	0	+	0.59596	(0.58,1]	chr7	339750	138	INTRON	INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2:ENST00000479402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	89	2	5.59447	5.902575000000001	6.21068	0.0117666	2.44053e-4	0.0737098	0.00522003
chr3	71173345	71173445	1827158	0	-	0.4	(0.39,0.419]	chr3	188150	413	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648426.1:ENST00000498215.7:ENST00000484350.5:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000468577.6:ENST00000649513.1:ENST00000649431.2:ENST00000647614.1:ENST00000649760.1:ENST00000650295.1:ENST00000648895.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	283	2	4.52448	5.90257	7.28066	0.0015472	2.14023e-4	0.0243048	0.00475596
chr19	37927450	37927550	7254471	0	+	0.47	(0.45,0.485]	chr19	743659	196	INTRON	INTRON	SIPA1L3	ENSG00000105738.11	ENST00000222345.11	protein_coding	protein_coding	protein_coding	protein_coding	0	93	2	5.79191	5.902485	6.01306	0.0113949	0.00183113	0.0723462	0.0216571
chr2	239349679	239349779	1392207	0	-	0.66	(0.58,1]	chr2	148752	252	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	91	2	5.63543	5.90244	6.16945	0.00387582	0.00131165	0.0401256	0.0171898
chr3	14403147	14403247	1414978	0	+	0.56	(0.523,0.58]	chr3	151900	3	SS5_PROX	SS5_PROX:INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000622810.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000613930.4:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	102	2	5.1205	5.90244	6.68438	0.0416463	1.2535e-4	0.136301	0.00324328
chr12	23940675	23940775	5388432	0	-	0.34	(0.33,0.36]	chr12	528193	197	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000537393.5:ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2:ENST00000538083.1:ENST00000536729.2:ENST00000446891.7:ENST00000536850.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	223	2	5.41845	5.902355	6.38626	0.00621741	5.22915e-5	0.052147	0.001699
chr3	185820116	185820215	1971313	0	-	0.363636	(0.36,0.39]	chr3	200402	57	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1:ENST00000466214.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	94	2	5.80333	5.90216	6.00099	0.0139273	0.00231859	0.0805916	0.0255753
chr3	188389113	188389213	1654151	0	+	0.35	(0.33,0.36]	chr3	173766	470	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1:ENST00000494233.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	93	2	5.84807	5.90215	5.95623	0.0129408	0.00184078	0.0775979	0.0217471
chr5	1328599	1328697	2609101	0	-	0.5	(0.485,0.523]	chr5	259719	23	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	276	2	4.8337	5.901630000000001	6.96956	0.00171649	5.46937e-5	0.025659	0.00175197
chr10	18562064	18562164	4642349	0	-	0.4	(0.39,0.419]	chr10	443321	97	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	101	2	5.40772	5.901615	6.39551	0.00743138	0.00585126	0.057548	0.0474117
chr19	56404652	56404752	7294711	0	+	0.47	(0.45,0.485]	chr19	751198	2	SS5_PROX	SS5_PROX:INTRON	ZNF583	ENSG00000198440.9	ENST00000588635.1:ENST00000291598.11:ENST00000537943.5:ENST00000539211.6:ENST00000333201.13:ENST00000391778.3:ENST00000436972.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	97	2	5.34301	5.9016	6.46019	0.0328801	3.07362e-4	0.122593	0.00618726
chr11	70763868	70763967	5061920	0	-	0.383838	(0.36,0.39]	chr11	492701	460	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	214	2	4.53094	5.900955	7.27097	0.00152619	7.44674e-4	0.0240809	0.0115801
chr8	108459595	108459694	3902483	0	+	0.494949	(0.485,0.523]	chr8	372963	33	INTRON	INTRON	EMC2	ENSG00000104412.8	ENST00000220853.8:ENST00000517784.5:ENST00000519642.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	97	2	5.48966	5.9009	6.31214	0.00589975	0.0033837199999999998	0.0506158	0.0328791
chr12	46518001	46518101	5218372	0	+	0.32	(0.29,0.33]	chr12	506656	229	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2	lncRNA	lncRNA	lncRNA	lncRNA	0	98	2	5.43954	5.900875	6.36221	0.00480225	0.00401582	0.0452644	0.0371286
chr13	113538360	113538459	5658665	0	+	0.484848	(0.45,0.485]	chr13	555722	32	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	92	2	5.78096	5.900825	6.02069	0.0166968	0.00101549	0.0884836	0.0143256
chr22	15819361	15819459	7682918	0	+	0.530612	(0.523,0.58]	chr22	803568	3	INTRON	INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000447898.5	lncRNA	lncRNA	lncRNA	lncRNA	2	266	2	4.41339	5.90081	7.38823	7.573e-4	1.94156e-4	0.0162522	0.004431
chr12	101915329	101915428	5308408	0	+	0.464646	(0.45,0.485]	chr12	517166	7	INTRON	INTRON	DRAM1	ENSG00000136048.14	ENST00000258534.13:ENST00000544152.5:ENST00000551403.1:ENST00000549066.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	92	2	5.84258	5.90076	5.95894	0.0151085	0.00119342	0.0841543	0.016037
chr17	2183680	2183780	6833791	0	-	0.46	(0.45,0.485]	chr17	691085	105	INTRON	INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11:ENST00000354901.8:ENST00000536871.6:ENST00000572369.5:ENST00000575176.5:ENST00000572205.5:ENST00000571442.5:ENST00000570659.5:ENST00000575663.5	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.84258	5.90076	5.95894	0.0151085	0.00119342	0.0841543	0.016037
chr10	75498893	75498992	4521147	0	+	0.525253	(0.523,0.58]	chr10	432249	473	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	270	2	4.72469	5.900449999999999	7.07621	0.00140655	7.39548e-5	0.0229261	0.00219171
chr13	97338627	97338727	5631970	0	+	0.54	(0.523,0.58]	chr13	553188	38	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	203	2	5.19239	5.900124999999999	6.60786	0.00345115	7.26023e-5	0.037649	0.00216169
chr11	70778756	70778856	5062069	0	-	0.49	(0.485,0.523]	chr11	492701	609	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	98	2	5.44489	5.900105	6.35532	0.00545609	0.00377098	0.0486984	0.0353672
chr21	43605068	43605168	7677121	0	-	0.47	(0.45,0.485]	chr21	802562	124	INTRON	INTRON	HSF2BP	ENSG00000160207.9	ENST00000291560.7	protein_coding	protein_coding	protein_coding	protein_coding	0	96	2	5.38503	5.89997	6.41491	0.0308908	0.00034885200000000003	0.119556	0.00674746
chr18	76425059	76425159	7179370	0	-	0.52	(0.485,0.523]	chr18	730080	444	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.80515	5.899945000000001	5.99474	0.0103305	0.00153111	0.0684871	0.0191213
chr2	63985716	63985815	1166695	0	-	0.343434	(0.33,0.36]	chr2	127344	13	INTRON	INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9	protein_coding	protein_coding	protein_coding	protein_coding	0	104	2	5.27557	5.89982	6.52407	0.00707628	0.00487053	0.0540197	0.0456282
chr5	78635946	78636046	2703248	0	-	0.4	(0.39,0.419]	chr5	266664	32	INTRON	INTRON	LHFPL2	ENSG00000145685.14	ENST00000380345.7:ENST00000503686.5:ENST00000512759.5:ENST00000515349.1:ENST00000514587.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	95	2	5.52851	5.89967	6.27083	0.029339	7.20415e-4	0.116079	0.0112959
chr4	77819308	77819376	2256076	0	-	0.573529	(0.523,0.58]	chr4	227836	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	CNOT6L	ENSG00000138767.14	ENST00000504123.7:ENST00000649644.1:ENST00000512485.6:ENST00000504804.7:ENST00000506166.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	99	2	5.40225	5.89953	6.39681	0.00509616	0.00404292	0.0467496	0.0371291
chr13	50091545	50091645	5593507	0	+	0.3	(0.29,0.33]	chr13	551518	77	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000469754.3:ENST00000655550.1:ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000659280.2	lncRNA	lncRNA	lncRNA	lncRNA	0	95	2	5.56987	5.8992249999999995	6.22858	0.00614258	0.0029307	0.0517628	0.0298918
chr4	6940860	6940960	2012712	0	+	0.47	(0.45,0.485]	chr4	205371	164	INTRON	INTRON	TBC1D14	ENSG00000132405.19	ENST00000448507.5:ENST00000409757.9	protein_coding	protein_coding	protein_coding	protein_coding	0	96	2	5.56203	5.89906	6.23609	0.00778782	0.00322991	0.0590114	0.0319521
chr11	115492882	115492982	5131019	0	-	0.37	(0.36,0.39]	chr11	498122	467	INTRON	INTRON	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000541434.5:ENST00000543249.1:ENST00000540951.1:ENST00000536781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	93	2	5.80006	5.898565	5.99707	0.0191255	0.00143949	0.0952349	0.0183435
chr9	114204601	114204701	4226198	0	+	0.59	(0.58,1]	chr9	400777	1	SS3_PROX	SS3_PROX:INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8:ENST00000451716.5:ENST00000494090.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	90	2	5.47839	5.898295	6.3182	0.0145198	1.74994e-4	0.0823104	0.00410754
chr1	53246828	53246922	485997	0	-	0.340426	(0.33,0.36]	chr1	57820	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	LRP8	ENSG00000157193.18	ENST00000306052.12:ENST00000661457.1:ENST00000668448.1:ENST00000667377.1:ENST00000658277.1:ENST00000653810.1:ENST00000657047.1:ENST00000662198.1:ENST00000657895.1:ENST00000668071.1:ENST00000529670.6:ENST00000480045.6:ENST00000654834.1:ENST00000653217.1:ENST00000669432.1:ENST00000465675.6:ENST00000662802.1:ENST00000371454.6:ENST00000662604.1:ENST00000354412.7:ENST00000658404.1:ENST00000668991.1:ENST00000656486.1:ENST00000654947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	94	2	5.53966	5.898244999999999	6.25683	0.0251076	6.42061e-4	0.107672	0.0104165
chr6	125301448	125301548	3251018	0	-	0.58	(0.523,0.58]	chr6	314908	2	SS5_PROX	SS5_PROX:INTRON	HDDC2	ENSG00000111906.18	ENST00000609477.5:ENST00000318787.13:ENST00000398153.7:ENST00000608295.5:ENST00000608461.1:ENST00000608284.1:ENST00000609574.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	91	2	5.82039	5.898095	5.9758	0.0139724	9.36996e-4	0.0805959	0.0135546
chr12	2984841	2984941	5157932	0	+	0.49	(0.485,0.523]	chr12	501258	241	INTRON	INTRON	TEAD4	ENSG00000197905.10	ENST00000358409.7:ENST00000359864.8:ENST00000540314.2:ENST00000536826.2:ENST00000543035.6:ENST00000397122.6:ENST00000443986.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	320	2	4.1862	5.89801	7.60982	4.78546e-4	1.97626e-4	0.0126479	0.00448962
chr3	113687182	113687282	1874518	0	-	0.47	(0.45,0.485]	chr3	190763	94	INTRON	INTRON	USF3	ENSG00000176542.10	ENST00000491165.5:ENST00000316407.9	protein_coding	protein_coding	protein_coding	protein_coding	0	93	2	5.75605	5.89783	6.03961	0.0108974	0.002004	0.0707085	0.0230381
chr19	941321	941421	7185259	0	+	0.64	(0.58,1]	chr19	730741	82	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	196	2	4.42609	5.897805	7.36952	4.76485e-4	2.84773e-4	0.00957277	0.008444
chr17	15467720	15467820	6860112	0	-	0.52	(0.485,0.523]	chr17	695071	2	INTRON	INTRON	TVP23C-CDRT4:CDRT4	ENSG00000259024.6:ENSG00000239704.11	ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	268	2	4.61921	5.8977699999999995	7.17633	0.00114421	1.06938e-4	0.0204418	0.00288045
chr1	3471227	3471322	5821	0	+	0.652632	(0.58,1]	chr1	1229	13	INTRON	INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5	protein_coding	protein_coding	protein_coding	protein_coding	1	194	2	4.47001	5.897705	7.3254	4.15967e-4	3.15151e-4	0.0100952	0.00768537
chr10	79218773	79218873	4533549	0	+	0.51	(0.485,0.523]	chr10	432457	21	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	243	2	4.62724	5.89747	7.1677	0.0028225	3.05856e-5	0.0337022	0.00114404
chr8	22165853	22165953	3769411	0	+	0.52	(0.485,0.523]	chr8	362553	3	SS5_PROX	SS5_PROX:INTRON	BMP1	ENSG00000168487.20	ENST00000354870.5:ENST00000397814.7:ENST00000520970.5:ENST00000518913.5:ENST00000520626.6:ENST00000520982.5:ENST00000518656.5:ENST00000306385.10:ENST00000306349.13:ENST00000471755.5:ENST00000483364.5:ENST00000521385.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	93	2	5.69477	5.897405	6.10004	0.00860355	0.00203227	0.0623467	0.0232814
chr10	127302654	127302754	4610954	0	+	0.42	(0.419,0.45]	chr10	440803	306	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2:ENST00000484400.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	96	2	5.4831	5.897285	6.31147	0.0345118	7.29222e-4	0.126025	0.0113963
chr17	546276	546376	6822610	0	-	0.43	(0.419,0.45]	chr17	689698	72	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681050.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000681600.1:ENST00000576149.5:ENST00000681917.1:ENST00000681103.1:ENST00000681858.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000679817.1:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	96	2	5.4831	5.897285	6.31147	0.0345118	7.29222e-4	0.126025	0.0113963
chr12	422213	422312	5148407	0	+	0.454545	(0.45,0.485]	chr12	500517	32	INTRON	INTRON	CCDC77	ENSG00000120647.10	ENST00000540180.5:ENST00000422000.5:ENST00000543504.5:ENST00000540344.5:ENST00000412006.6:ENST00000239830.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	95	2	5.42587	5.8970199999999995	6.36817	0.0290571	3.97249e-4	0.116079	0.00741985
chr20	58688847	58688946	7498566	0	+	0.555556	(0.523,0.58]	chr20	781977	95	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1:ENST00000413559.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	1	198	2	4.89568	5.8968	6.89792	0.00198913	1.80282e-4	0.0279961	0.00419938
chr18	48939094	48939194	7157896	0	-	0.56	(0.523,0.58]	chr18	727804	55	INTRON	INTRON	SMAD7	ENSG00000101665.10	ENST00000262158.8:ENST00000545051.2:ENST00000591805.5:ENST00000589634.1:ENST00000585986.1:ENST00000586093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	94	2	5.61976	5.896795	6.17383	0.00760615	0.00236826	0.0579698	0.0259199
chr22	28818130	28818230	7704968	0	+	0.42	(0.419,0.45]	chr22	806290	158	INTRON	INTRON	ENSG00000226471	ENSG00000226471.7	ENST00000458080.1:ENST00000692644.1:ENST00000687270.1:ENST00000418292.1:ENST00000451486.5	lncRNA	lncRNA	lncRNA	lncRNA	0	95	2	5.72351	5.896765	6.07002	0.0143746	0.00310292	0.0821732	0.0311614
chr17	15647799	15647899	6861299	0	-	0.45	(0.419,0.45]	chr17	695173	46	INTRON	INTRON	TRIM16	ENSG00000221926.13	ENST00000578237.5:ENST00000416464.6:ENST00000649191.2:ENST00000336708.11:ENST00000578744.5:ENST00000473540.5:ENST00000581224.5:ENST00000581200.1:ENST00000460728.5:ENST00000579272.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	94	2	5.82848	5.896615000000001	5.96475	0.0169309	0.00242141	0.088829	0.0261589
chr8	502689	502789	3931431	0	-	0.52	(0.485,0.523]	chr8	375980	77	INTRON	INTRON	TDRP	ENSG00000180190.13	ENST00000523656.5:ENST00000324079.11	protein_coding	protein_coding	protein_coding	protein_coding	0	91	2	5.78967	5.89654	6.00341	0.0146211	9.07333e-4	0.0826064	0.0132726
chr1	11080620	11080691	399732	0	-	0.380282	(0.36,0.39]	chr1	45635	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EXOSC10	ENSG00000171824.14	ENST00000304457.11:ENST00000376936.9:ENST00000474216.5:ENST00000472078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	93	2	5.88962	5.896535	5.90345	0.0166261	0.00181603	0.0884836	0.0215865
chr14	104720679	104720776	5925633	0	+	0.618557	(0.58,1]	chr14	579884	20	UTR3	UTR3:EXON_MRNA	INF2	ENSG00000203485.14	ENST00000330634.11:ENST00000392634.9:ENST00000675207.1:ENST00000675638.1	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.31036	5.896355	6.48235	0.00312721	0.00202884	0.0311915	0.0283135
chr7	105205520	105205615	3666146	0	-	0.452632	(0.45,0.485]	chr7	353713	14	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	95	2	5.60298	5.8962	6.18942	0.00844217	0.00292492	0.0617623	0.029882
chr3	13205624	13205724	1691198	0	-	0.53	(0.523,0.58]	chr3	176566	411	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	91	2	5.72487	5.89617	6.06747	0.0163679	7.30845e-4	0.0875379	0.0113963
chrX	9567741	9567841	7843477	0	+	0.54	(0.523,0.58]	chrX	822423	68	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	91	2	5.72487	5.89617	6.06747	0.0163679	7.30845e-4	0.0875379	0.0113963
chr19	55270835	55270934	7407626	0	-	0.494949	(0.485,0.523]	chr19	771326	42	INTRON	INTRON	HSPBP1	ENSG00000133265.11	ENST00000433386.7:ENST00000255631.9:ENST00000587922.5:ENST00000585927.1:ENST00000587959.1	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.58723	5.896015	6.2048	0.0203514	5.23665e-4	0.0979211	0.0090184
chr22	19423121	19423220	7763487	0	-	0.50505	(0.485,0.523]	chr22	813787	120	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	92	2	5.58723	5.896015	6.2048	0.0203514	5.23665e-4	0.0979211	0.0090184
chr22	47114502	47114602	7748544	0	+	0.49	(0.485,0.523]	chr22	812256	25	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	91	2	5.8513	5.895805	5.94031	0.0131886	0.00107389	0.0785398	0.0148869
chr16	88752872	88752972	6658533	0	-	0.52	(0.485,0.523]	chr16	666420	30	INTRON	INTRON	PIEZO1	ENSG00000103335.22	ENST00000301015.14	protein_coding	protein_coding	protein_coding	protein_coding	0	112	2	4.84611	5.895395000000001	6.94468	0.0608067	6.06735e-5	0.158506	0.00188492
chr13	112692846	112692946	5652568	0	+	0.3	(0.29,0.33]	chr13	554894	20	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5	protein_coding	protein_coding	protein_coding	protein_coding	0	91	2	5.88801	5.895155000000001	5.9023	0.0112593	0.00126253	0.0720977	0.0167512
chr5	1327419	1327517	2609089	0	-	0.510204	(0.485,0.523]	chr5	259719	11	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	207	2	5.29324	5.895125	6.49701	0.00420849	5.52772e-5	0.0421454	0.00176494
chr12	22497889	22497988	5383804	0	-	0.373737	(0.36,0.39]	chr12	528009	42	INTRON	INTRON	C2CD5	ENSG00000111731.13	ENST00000333957.8:ENST00000446597.6:ENST00000536386.5:ENST00000396028.6:ENST00000542676.5:ENST00000545552.5:ENST00000541310.5:ENST00000543797.5:ENST00000543855.5:ENST00000542683.1:ENST00000535555.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	93	2	5.87084	5.89456	5.91828	0.0158902	0.00196738	0.0859576	0.022768300000000002
chr20	63730921	63731021	7509348	0	+	0.44	(0.419,0.45]	chr20	783515	214	INTRON	INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	217	2	5.14118	5.89449	6.6478	0.00559992	1.50573e-4	0.0493906	0.00368901
chr17	82718671	82718738	6818065	0	+	0.507463	(0.485,0.523]	chr17	689125	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	91	2	5.88115	5.89442	5.90769	0.012541	0.0011708	0.0761905	0.0157899
chr17	80274894	80274993	6807313	0	+	0.575758	(0.523,0.58]	chr17	687364	11	INTRON	INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000319921.4	protein_coding	protein_coding	protein_coding	protein_coding	0	91	2	5.8779	5.893935000000001	5.90997	0.012016	0.00121652	0.0743424	0.0162693
chr20	63733775	63733871	7509378	0	+	0.614583	(0.58,1]	chr20	783523	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1:ENST00000632538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	218	2	4.50455	5.893689999999999	7.28283	0.00215269	7.19115e-6	0.02913	4.08425e-4
chr2	231044194	231044294	1047566	0	+	0.38	(0.36,0.39]	chr2	114051	24	INTRON	INTRON	C2orf72	ENSG00000204128.6	ENST00000373640.5:ENST00000477463.1:ENST00000463834.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	209	2	4.70507	5.893155	7.08124	0.00216352	4.62952e-4	0.0292299	0.00825119
chr16	47609525	47609625	6444410	0	+	0.36	(0.33,0.36]	chr16	639156	116	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000568439.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	97	2	5.50696	5.89302	6.27908	0.00749528	0.00418696	0.0576451	0.0379935
chr2	232898782	232898881	1383826	0	-	0.525253	(0.523,0.58]	chr2	147952	35	INTRON	INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000416114.3:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	93	2	5.47382	5.8929100000000005	6.312	0.0244797	3.69994e-4	0.106683	0.00704866
chr15	75009390	75009490	6153298	0	+	0.43	(0.419,0.45]	chr15	605274	1	SS3_PROX	SS3_PROX:INTRON	SCAMP5	ENSG00000198794.12	ENST00000568423.5:ENST00000562327.5:ENST00000568018.5:ENST00000425597.8:ENST00000562212.5:ENST00000565923.5:ENST00000562765.5:ENST00000567920.5:ENST00000567535.5:ENST00000361900.10:ENST00000564491.5:ENST00000566872.5:ENST00000564141.1:ENST00000568119.5:ENST00000565989.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	97	2	5.57051	5.892645	6.21478	0.011428	0.00441471	0.0723462	0.0393688
chr10	75889124	75889224	4525060	0	+	0.4	(0.39,0.419]	chr10	432292	52	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	97	2	5.37172	5.89258	6.41344	0.0367885	4.94825e-4	0.129052	0.00865935
chr19	46979891	46979991	7275372	0	+	0.61	(0.58,1]	chr19	747275	421	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	88	2	5.63118	5.892469999999999	6.15376	0.0109983	2.90409e-4	0.0708586	0.0059241
chr11	70788948	70789048	5062171	0	-	0.52	(0.485,0.523]	chr11	492701	711	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	91	2	5.87431	5.892355	5.9104	0.0119344	0.00127835	0.0741726	0.0168904
chr1	31577958	31578051	81023	0	+	0.548387	(0.523,0.58]	chr1	9276	1	INTRON	INTRON	LINC01226:TINAGL1	ENSG00000284543.1:ENSG00000142910.16	ENST00000639839.1:ENST00000640226.1:ENST00000457433.6:ENST00000271064.12:ENST00000461030.5:ENST00000478398.5:ENST00000481165.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	136	2	4.60868	5.892284999999999	7.17589	0.0226775	0.00115604	0.108193	0.0205679
chr20	6026438	6026538	7425884	0	+	0.37	(0.36,0.39]	chr20	773620	2	SS5_PROX	SS5_PROX:INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	93	2	5.67128	5.892205000000001	6.11313	0.023302	0.00107374	0.103669	0.0148869
chr4	94600180	94600279	2089163	0	+	0.363636	(0.36,0.39]	chr4	212960	121	INTRON	INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000509357.5:ENST00000511586.5:ENST00000380176.7:ENST00000506632.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	93	2	5.67128	5.892205000000001	6.11313	0.023302	0.00107374	0.103669	0.0148869
chr13	26254461	26254551	5551190	0	+	0.722222	(0.58,1]	chr13	547911	5	UTR5	UTR5:EXON_MRNA	CDK8	ENSG00000132964.12	ENST00000536792.5:ENST00000381527.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	88	2	5.82964	5.89209	5.95454	0.0059453	7.58111e-4	0.0506158	0.0117078
chr4	23795528	23795626	2208643	0	-	0.459184	(0.45,0.485]	chr4	223244	37	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PPARGC1A	ENSG00000109819.9	ENST00000509702.5:ENST00000264867.7:ENST00000613098.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	209	2	4.46808	5.89209	7.3161	0.0010596	7.25143e-4	0.0195612	0.0113618
chr12	132793660	132793758	5540398	0	-	0.673469	(0.58,1]	chr12	546816	20	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	193	2	4.47001	5.89208	7.31415	4.15967e-4	3.2338e-4	0.0102338	0.00768537
chr17	47944115	47944215	6748751	0	+	0.53	(0.523,0.58]	chr17	679903	1	SS3_PROX	SS3_PROX:INTRON	PNPO	ENSG00000108439.11	ENST00000583599.6:ENST00000641709.1:ENST00000641323.1:ENST00000225573.5:ENST00000642017.2:ENST00000434554.7:ENST00000641856.1:ENST00000582171.6:ENST00000641305.1:ENST00000585320.5:ENST00000584061.6:ENST00000583245.6:ENST00000641511.1:ENST00000641703.1:ENST00000641427.1:ENST00000641285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	92	2	5.73609	5.892005	6.04792	0.00948306	0.0017613	0.0656057	0.0211077
chr5	38544331	38544430	2641152	0	-	0.545455	(0.523,0.58]	chr5	262351	133	INTRON	INTRON	LIFR	ENSG00000113594.10	ENST00000453190.7:ENST00000263409.8:ENST00000503088.1:ENST00000506990.5:ENST00000511561.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	92	2	5.73609	5.892005	6.04792	0.00948306	0.0017613	0.0656057	0.0211077
chr17	740700	740800	6663977	0	+	0.45	(0.419,0.45]	chr17	667328	1	SS5_PROX	SS5_PROX:INTRON	TLCD3A	ENSG00000167695.15	ENST00000572018.5:ENST00000301324.8:ENST00000308278.13:ENST00000570699.1:ENST00000577008.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	211	2	4.7886	5.89123	6.99386	0.00308705	4.02471e-4	0.0354967	0.0075037
chr21	41828833	41828932	7673610	0	-	0.50505	(0.485,0.523]	chr21	801978	1	INTRON	INTRON	PRDM15	ENSG00000141956.14	ENST00000422911.6:ENST00000441787.5:ENST00000449395.6:ENST00000398548.6:ENST00000447016.6:ENST00000269844.5:ENST00000491486.5:ENST00000489661.5:ENST00000496124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	92	2	5.55054	5.890969999999999	6.2314	0.0215787	4.86354e-4	0.100612	0.00857996
chr18	21779885	21779985	7029298	0	+	0.32	(0.29,0.33]	chr18	717984	2	SS5_PROX	SS5_PROX:INTRON	MIB1	ENSG00000101752.13	ENST00000578646.5:ENST00000261537.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	91	2	5.66475	5.89063	6.11651	0.0164475	7.13924e-4	0.0877632	0.0112151
chr2	235538535	235538635	1062983	0	+	0.55	(0.523,0.58]	chr2	115656	136	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	95	2	5.53665	5.890535	6.24442	0.00670944	0.00291382	0.0541591	0.0298557
chr9	134365383	134365482	4261077	0	+	0.606061	(0.58,1]	chr9	406311	384	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	90	2	5.63543	5.88985	6.14427	0.00407804	0.00131165	0.0413652	0.0171898
chr2	119796861	119796961	883962	0	+	0.44	(0.419,0.45]	chr2	100110	52	INTRON	INTRON	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000460162.1:ENST00000420482.5:ENST00000460289.5:ENST00000488279.6:ENST00000485247.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	93	2	5.82136	5.889435000000001	5.95751	0.0210659	0.0017735	0.0996078	0.02121
chr15	64343185	64343284	6300640	0	-	0.454545	(0.45,0.485]	chr15	620884	1	INTRON	INTRON	CSNK1G1:ENSG00000259316	ENSG00000169118.18:ENSG00000259316.12	ENST00000303052.13:ENST00000607537.6:ENST00000634654.1:ENST00000634811.1:ENST00000606793.3:ENST00000634251.1:ENST00000634847.3:ENST00000635529.1:ENST00000634318.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2:ENST00000635413.1:ENST00000634538.1:ENST00000635320.1:ENST00000558783.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	96	2	5.51989	5.88938	6.25887	0.00748565	0.00357389	0.0576451	0.0342681
chr1	55079759	55079859	491284	0	-	0.48	(0.45,0.485]	chr1	58560	1	SS3_PROX	SS3_PROX:INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.61431	5.889355	6.1644	0.0217589	6.92954e-4	0.100615	0.0109657
chr17	77375726	77375823	6804120	0	+	0.536082	(0.523,0.58]	chr17	686752	10	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1:ENST00000423034.6:ENST00000590059.5:ENST00000587514.1:ENST00000590586.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	98	2	5.40225	5.889125	6.376	0.00529293	0.00404292	0.047841	0.0371291
chrX	150585023	150585123	7958073	0	+	0.45	(0.419,0.45]	chrX	832752	158	INTRON	INTRON	MTM1	ENSG00000171100.16	ENST00000685944.1:ENST00000692638.1:ENST00000688152.1:ENST00000691232.1:ENST00000684910.1:ENST00000689810.1:ENST00000690351.1:ENST00000691686.1:ENST00000691851.1:ENST00000693422.1:ENST00000687365.1:ENST00000370396.7:ENST00000692015.1:ENST00000692852.1:ENST00000370393.5:ENST00000306167.11:ENST00000490530.1:ENST00000689694.1:ENST00000690282.1:ENST00000688403.1:ENST00000689314.1:ENST00000685439.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	93	2	5.75975	5.88885	6.01795	0.0231013	0.00152916	0.102982	0.0191213
chr16	50624190	50624290	6452171	0	+	0.44	(0.419,0.45]	chr16	639918	21	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	1	211	2	4.89478	5.888719999999999	6.8826599999999996	0.00374639	3.00412e-4	0.0393941	0.00607383
chr16	50623893	50623992	6452168	0	+	0.555556	(0.523,0.58]	chr16	639918	18	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	3	693	2	5.84546	5.888545000000001	5.93163	2.37631e-4	1.42111e-6	0.0086821	1.31935e-4
chr11	87110779	87110878	4911114	0	+	0.272727	[0,0.29]	chr11	474124	190	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000529023.5:ENST00000526733.5:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5:ENST00000531800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	197	2	5.24215	5.888405	6.53466	0.00203663	5.17705e-5	0.0283511	0.00168775
chr11	129238682	129238781	5144433	0	-	0.363636	(0.36,0.39]	chr11	499903	465	INTRON	INTRON	ARHGAP32	ENSG00000134909.19	ENST00000525234.1	protein_coding	protein_coding	protein_coding	protein_coding	0	94	2	5.52987	5.888035	6.2462	0.0287883	7.62178e-4	0.115991	0.0117554
chr22	39420927	39421027	7725739	0	+	0.65	(0.58,1]	chr22	809455	9	INTRON	INTRON	TAB1	ENSG00000100324.14	ENST00000216160.11:ENST00000331454.3	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.79283	5.888025000000001	5.98322	0.00562007	8.4246e-4	0.0493906	0.0125912
chr3	13374643	13374733	1692595	0	-	0.6	(0.58,1]	chr3	176730	4	INTRON	INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000420141.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	88	2	5.79283	5.888025000000001	5.98322	0.00562007	8.4246e-4	0.0493906	0.0125912
chr19	7153526	7153626	7323802	0	-	0.54	(0.523,0.58]	chr19	756780	2	INTRON	INTRON	INSR	ENSG00000171105.14	ENST00000341500.9:ENST00000302850.10:ENST00000598216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	91	2	5.80873	5.887734999999999	5.96674	0.0109075	0.00145893	0.0707085	0.0184991
chr15	66432927	66433026	6137152	0	+	0.50505	(0.485,0.523]	chr15	603713	306	INTRON	INTRON	MAP2K1	ENSG00000169032.11	ENST00000425818.2:ENST00000689951.1:ENST00000685763.1:ENST00000307102.10:ENST00000691576.1:ENST00000686347.1:ENST00000691077.1:ENST00000687191.1:ENST00000691937.1:ENST00000692487.1:ENST00000685172.1:ENST00000692683.1:ENST00000684779.1:ENST00000693150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	98	2	5.39869	5.887560000000001	6.37643	0.0052506	0.00421243	0.0476984	0.0380601
chr1	27235351	27235451	70413	0	+	0.48	(0.45,0.485]	chr1	7903	4	SS5_PROX	SS5_PROX:INTRON	WDTC1	ENSG00000142784.16	ENST00000319394.8:ENST00000361771.7	protein_coding	protein_coding	protein_coding	protein_coding	0	95	2	5.56203	5.88749	6.21295	0.00810629	0.00322991	0.0602166	0.0319521
chr12	79890819	79890919	5463326	0	-	0.45	(0.419,0.45]	chr12	537312	175	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546369.5:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	1	212	2	4.62855	5.887309999999999	7.14607	0.00236107	6.21482e-4	0.0306624	0.0101764
chr22	42986834	42986933	7824001	0	-	0.393939	(0.39,0.419]	chr22	820626	271	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	94	2	5.52851	5.88707	6.24563	0.029339	7.69256e-4	0.116079	0.0118331
chr1	25357546	25357643	65245	0	+	0.484536	(0.45,0.485]	chr1	6995	3	INTRON	INTRON	TMEM50A	ENSG00000183726.11	ENST00000498135.5:ENST00000491936.5:ENST00000480937.5:ENST00000374358.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	99	2	5.38553	5.887005	6.38848	0.0059625	0.00490471	0.0506812	0.0422077
chr3	51668073	51668172	1472221	0	+	0.484848	(0.45,0.485]	chr3	157989	48	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	2	536	2	5.62762	5.886835	6.14605	4.40657e-4	4.44772e-6	0.0120637	2.89414e-4
chr6	159711530	159711629	3300581	0	-	0.525253	(0.523,0.58]	chr6	319519	183	INTRON	INTRON	SOD2	ENSG00000112096.19	ENST00000546087.5:ENST00000545162.5:ENST00000535561.5:ENST00000537657.5:ENST00000401980.3	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.51247	5.8868	6.26113	0.0230387	4.27166e-4	0.102982	0.00779962
chr17	75374533	75374632	6971759	0	-	0.494949	(0.485,0.523]	chr17	711059	9	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	94	2	5.57523	5.8867	6.19817	0.00723584	0.00274261	0.0565323	0.028553
chr7	155960822	155960921	3520006	0	+	0.515152	(0.485,0.523]	chr7	339889	81	INTRON	INTRON	ENSG00000204876	ENSG00000204876.5	ENST00000684576.1	lncRNA	lncRNA	lncRNA	lncRNA	0	91	2	5.623	5.886535	6.15007	0.0192139	6.0909e-4	0.095424900000000007	0.0100377
chr17	82717296	82717396	6818050	0	+	0.64	(0.58,1]	chr17	689118	4	SS5_PROX	SS5_PROX:INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	97	2	5.31036	5.88624	6.46212	0.00312721	0.00211728	0.0311915	0.028892
chr2	98692461	98692561	1228455	0	-	0.46	(0.45,0.485]	chr2	133005	136	INTRON	INTRON	MGAT4A	ENSG00000071073.13	ENST00000393487.6:ENST00000264968.7:ENST00000409391.1:ENST00000484936.5:ENST00000460768.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	91	2	5.78096	5.885555	5.99015	0.0166968	0.00110015	0.0884836	0.015136
chr13	113055204	113055304	5656189	0	+	0.45	(0.419,0.45]	chr13	555189	4	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	93	2	5.86184	5.885465	5.90909	0.0184411	0.00223565	0.0927235	0.024843
chr19	36214521	36214621	7367440	0	-	0.71	(0.58,1]	chr19	763878	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF565	ENSG00000196357.12	ENST00000304116.10:ENST00000355114.9:ENST00000392173.6:ENST00000591473.1:ENST00000587803.1:ENST00000586648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	93	2	5.45872	5.885325	6.31193	0.00289626	0.00211999	0.03418	0.0239744
chr16	85245964	85246064	6515528	0	+	0.58	(0.523,0.58]	chr16	646377	182	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	212	2	4.30157	5.8853100000000005	7.46905	0.00101591	6.43551e-4	0.0148938	0.0143256
chr12	132124693	132124793	5352322	0	+	0.63	(0.58,1]	chr12	523557	1	SS3_PROX	SS3_PROX:INTRON	EP400P1	ENSG00000185684.16	ENST00000488030.5:ENST00000332441.7:ENST00000641289.3:ENST00000475841.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	89	2	5.47839	5.885225	6.29206	0.0145198	1.89825e-4	0.0823104	0.0043642
chr2	11814587	11814687	722754	0	+	0.43	(0.419,0.45]	chr2	84466	1	SS3_PROX	SS3_PROX:INTRON	LPIN1	ENSG00000134324.12	ENST00000449576.6:ENST00000425416.6:ENST00000396097.5:ENST00000396099.5:ENST00000256720.6:ENST00000674199.1:ENST00000404113.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	95	2	5.4831	5.88511	6.28712	0.0345118	7.76382e-4	0.126025	0.0118807
chr15	57221285	57221385	6113383	0	+	0.35	(0.33,0.36]	chr15	601659	13	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000561346.5:ENST00000560887.1:ENST00000561235.5:ENST00000560764.5:ENST00000543579.5:ENST00000537840.5:ENST00000343827.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	92	2	5.81391	5.88507	5.95623	0.0129408	0.00200357	0.0775979	0.0230381
chr2	3287017	3287117	1080977	0	-	0.68	(0.58,1]	chr2	117633	43	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	87	2	5.76934	5.885065	6.00079	0.00849371	4.59827e-4	0.0617717	0.00821903
chr21	45451824	45451924	7630781	0	+	0.63	(0.58,1]	chr21	797656	460	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.8019	5.88502	5.96814	0.007984	5.06433e-4	0.0596361	0.00881473
chr15	34554456	34554555	6218163	0	-	0.454545	(0.45,0.485]	chr15	612407	1	INTRON	INTRON	GOLGA8B	ENSG00000215252.12	ENST00000683415.1:ENST00000569100.5:ENST00000484716.5:ENST00000564575.5:ENST00000566091.5:ENST00000566258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	91	2	5.74913	5.88491	6.02069	0.017574	0.00101549	0.0906595	0.0143256
chr3	60911987	60912087	1802733	0	-	0.42	(0.419,0.45]	chr3	186830	555	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5:ENST00000490952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	98	2	5.48746	5.884755	6.28205	0.0102557	0.00532156	0.0684871	0.0446153
chr17	19962239	19962339	6870284	0	-	0.35	(0.33,0.36]	chr17	696653	33	INTRON	INTRON	AKAP10	ENSG00000108599.15	ENST00000225737.11:ENST00000395536.7:ENST00000582611.5:ENST00000572155.1:ENST00000572341.5:ENST00000576896.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	94	2	5.62984	5.88441	6.13898	0.00953039	0.00313405	0.0658012	0.0312116
chr16	89295583	89295682	6659761	0	-	0.626263	(0.58,1]	chr16	666648	34	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	87	2	5.73602	5.884365	6.03271	0.00904546	4.18183e-4	0.0637469	0.00770005
chr4	159275009	159275109	2159706	0	+	0.41	(0.39,0.419]	chr4	218716	64	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5:ENST00000504604.5:ENST00000644902.1:ENST00000511336.5:ENST00000510510.5:ENST00000264431.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	93	2	5.76778	5.883705	5.99963	0.0142473	0.0025422	0.0817691	0.0271978
chr17	66336692	66336792	6783771	0	+	0.42	(0.419,0.45]	chr17	684226	302	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	288	2	4.66946	5.883274999999999	7.09709	0.00257476	1.55758e-4	0.0321387	0.00378841
chr6	24185723	24185823	3108598	0	-	0.35	(0.33,0.36]	chr6	301405	67	INTRON	INTRON	DCDC2	ENSG00000146038.12	ENST00000378454.8:ENST00000378450.6	protein_coding	protein_coding	protein_coding	protein_coding	0	108	2	5.11654	5.8832	6.64986	0.00998589	0.00388382	0.0667545	0.0401804
chr14	89247130	89247230	6026569	0	-	0.32	(0.29,0.33]	chr14	591432	159	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	91	2	5.59406	5.883179999999999	6.1723	0.0184845	6.13404e-4	0.0928429	0.0100959
chr17	9335806	9335906	6852607	0	-	0.39	(0.36,0.39]	chr17	694494	625	INTRON	INTRON	STX8	ENSG00000170310.15	ENST00000306357.9:ENST00000575858.5:ENST00000570583.5:ENST00000574431.5:ENST00000575294.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	92	2	5.76893	5.883	5.99707	0.0200694	0.00143949	0.0971995	0.0183435
chr7	44522642	44522742	3585220	0	-	0.42	(0.419,0.45]	chr7	345622	4	SS3_PROX	SS3_PROX:INTRON	NPC1L1	ENSG00000015520.15	ENST00000381160.8:ENST00000289547.8:ENST00000546276.5	protein_coding	protein_coding	protein_coding	protein_coding	0	93	2	5.82848	5.882835	5.93719	0.0176643	0.00242141	0.0909046	0.0261589
chr20	63731121	63731220	7509350	0	+	0.606061	(0.58,1]	chr20	783515	216	INTRON	INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	249	2	4.85222	5.88279	6.91336	7.98131e-4	2.5972e-5	0.0167692	0.00101533
chr16	67914982	67915081	6473548	0	+	0.50505	(0.485,0.523]	chr16	642897	49	INTRON	INTRON	PSKH1	ENSG00000159792.10	ENST00000291041.6	protein_coding	protein_coding	protein_coding	protein_coding	0	91	2	5.58723	5.882465	6.1777	0.0203514	5.64449e-4	0.0979211	0.00950156
chr14	91220862	91220958	5899565	0	+	0.5625	(0.523,0.58]	chr14	576435	2	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	90	2	5.75742	5.882215	6.00701	0.0155135	8.61362e-4	0.0849828	0.0127848
chr10	103700810	103700909	4757108	0	-	0.515152	(0.485,0.523]	chr10	454791	73	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	333	2	4.28769	5.882115	7.47654	0.00230312	1.15894e-5	0.0302623	5.71291e-4
chr6	36096264	36096364	2904993	0	+	0.38	(0.36,0.39]	chr6	284939	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	92	2	5.73711	5.88204	6.02697	0.0210765	0.00133548	0.0996078	0.0173572
chr14	99403328	99403427	6051070	0	-	0.383838	(0.36,0.39]	chr14	593784	27	INTRON	INTRON	SETD3	ENSG00000183576.13	ENST00000331768.10:ENST00000446066.5:ENST00000489770.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	94	2	5.49224	5.881819999999999	6.2714	0.0304242	7.13729e-4	0.11845	0.0112151
chr3	78626720	78626820	1833741	0	-	0.35	(0.33,0.36]	chr3	188473	83	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5:ENST00000498428.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	96	2	5.50696	5.881805	6.25665	0.00779158	0.00418696	0.0590197	0.0379935
chr20	37507125	37507224	7559839	0	-	0.454545	(0.45,0.485]	chr20	789576	33	INTRON	INTRON	BLCAP	ENSG00000166619.15	ENST00000411780.1:ENST00000467603.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	338	2	4.22446	5.881705	7.53895	0.00293958	1.24295e-5	0.0344315	5.98526e-4
chr11	47065913	47066013	4853707	0	+	0.33	(0.29,0.33]	chr11	464455	130	INTRON	INTRON	C11orf49	ENSG00000149179.14	ENST00000533124.5:ENST00000528488.5:ENST00000525279.5:ENST00000527234.5:ENST00000378618.6:ENST00000532840.5:ENST00000278460.12:ENST00000395460.6:ENST00000378615.7:ENST00000532633.5:ENST00000525895.5:ENST00000526424.5:ENST00000527784.5:ENST00000527667.5:ENST00000527268.5:ENST00000534249.5:ENST00000526827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	90	2	5.79652	5.88167	5.96682	0.0131751	0.00106564	0.0785398	0.0148659
chr1	204225583	204225683	645038	0	-	0.37	(0.36,0.39]	chr1	76439	16	INTRON	INTRON	PLEKHA6	ENSG00000143850.16	ENST00000272203.8:ENST00000637508.1:ENST00000414478.1	protein_coding	protein_coding	protein_coding	protein_coding	0	103	2	5.1004	5.88162	6.66284	0.0526991	2.49931e-4	0.14912	0.00531531
chr3	14416011	14416111	1415107	0	+	0.53	(0.523,0.58]	chr3	151906	2	SS3_PROX	SS3_PROX:INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000613930.4:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	95	2	5.30795	5.881304999999999	6.45466	0.0315825	2.45921e-4	0.120781	0.00524396
chr20	3759906	3760006	7516944	0	-	0.55	(0.523,0.58]	chr20	784790	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	C20orf27	ENSG00000101220.18	ENST00000399672.5:ENST00000379772.4:ENST00000217195.12	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.72487	5.881215	6.03756	0.0163679	7.92905e-4	0.0875379	0.0120621
chr13	52436196	52436289	5718022	0	-	0.387097	(0.36,0.39]	chr13	561201	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	VPS36	ENSG00000136100.14	ENST00000650274.1:ENST00000611132.4:ENST00000378060.9:ENST00000480923.5:ENST00000475375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	94	2	5.65802	5.8812	6.10438	0.0117824	0.003279	0.073726	0.0322062
chr19	33507253	33507353	7365926	0	-	0.54	(0.523,0.58]	chr19	763467	59	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000651646.1:ENST00000590408.1:ENST00000593163.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	90	2	5.85087	5.881069999999999	5.91127	0.0132767	0.00111349	0.0787251	0.0152496
chr13	98451973	98452073	5747025	0	-	0.62	(0.58,1]	chr13	563284	69	UTR3	UTR3:EXON_MRNA	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000376554.8	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.66698	5.880739999999999	6.0945	0.0102927	3.47472e-4	0.0684871	0.00673552
chr1	29236817	29236917	78376	0	+	0.59	(0.58,1]	chr1	8913	1	SS5_PROX	SS5_PROX:INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2	protein_coding	protein_coding	protein_coding	protein_coding	1	200	2	5.56726	5.88073	6.1942	0.00368616	1.08528e-5	0.0389784	5.4604e-4
chr22	50680704	50680801	7754976	0	+	0.505155	(0.485,0.523]	chr22	812716	9	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	90	2	5.75784	5.880625	6.00341	0.0154142	9.07333e-4	0.0849828	0.0132726
chr2	46989762	46989862	787720	0	+	0.44	(0.419,0.45]	chr2	89990	105	INTRON	INTRON	TTC7A	ENSG00000068724.17	ENST00000409245.5:ENST00000319190.11:ENST00000461601.5:ENST00000394850.6:ENST00000441914.5:ENST00000409825.5:ENST00000474321.6:ENST00000491786.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	101	2	5.35317	5.880520000000001	6.40787	0.00835435	0.00714797	0.0613588	0.0541241
chr2	10143461	10143559	717733	0	+	0.612245	(0.58,1]	chr2	83994	7	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000646978.1:ENST00000381786.7:ENST00000642996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	87	2	5.86553	5.88047	5.89541	0.0066708	6.8352e-4	0.0540577	0.0108717
chr11	110169281	110169379	4938270	0	+	0.44898	(0.419,0.45]	chr11	476062	37	UTR3	UTR3:EXON_MRNA	ZC3H12C	ENSG00000149289.11	ENST00000278590.8:ENST00000453089.2	protein_coding	protein_coding	protein_coding	protein_coding	1	210	2	4.68882	5.880395	7.07197	0.00269142	5.28169e-4	0.0329086	0.00907271
chr10	132765846	132765946	4619131	0	+	0.58	(0.523,0.58]	chr10	441205	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000445580.1	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.47382	5.880305	6.28679	0.0244797	3.97355e-4	0.106683	0.00741985
chr11	76012726	76012826	4900240	0	+	0.4	(0.39,0.419]	chr11	472921	4	SS3_PROX	SS3_PROX:INTRON	UVRAG	ENSG00000198382.9	ENST00000356136.8:ENST00000528420.5:ENST00000533454.5:ENST00000531818.5:ENST00000532130.1	protein_coding	protein_coding	protein_coding	protein_coding	0	94	2	5.65745	5.880235	6.10302	0.0120635	0.00330348	0.0745226	0.0323993
chr14	104721362	104721460	5925640	0	+	0.571429	(0.523,0.58]	chr14	579884	27	UTR3	UTR3:EXON_MRNA	INF2	ENSG00000203485.14	ENST00000330634.11:ENST00000392634.9:ENST00000675207.1:ENST00000675638.1	protein_coding	protein_coding	protein_coding	protein_coding	0	95	2	5.49322	5.88021	6.2672	0.00644151	0.00324246	0.0530091	0.0319521
chr11	70686704	70686804	5061146	0	-	0.57	(0.523,0.58]	chr11	492688	167	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	96	2	5.44845	5.8800799999999995	6.31171	0.00594629	0.00361636	0.0506158	0.0342681
chr15	76231997	76232097	6325466	0	-	0.38	(0.36,0.39]	chr15	624092	2	INTRON	INTRON	ETFA	ENSG00000140374.17	ENST00000690610.1:ENST00000557943.6:ENST00000692691.1:ENST00000688389.1:ENST00000687293.1:ENST00000691695.1:ENST00000685863.1:ENST00000689730.1:ENST00000687975.1:ENST00000693064.1:ENST00000688908.1:ENST00000691021.1:ENST00000433983.6:ENST00000267950.12:ENST00000685548.1:ENST00000565910.6:ENST00000688154.1:ENST00000560595.6:ENST00000560726.5:ENST00000559602.5:ENST00000560044.6:ENST00000559973.5:ENST00000559386.2:ENST00000560899.5:ENST00000685118.1:ENST00000688637.1:ENST00000559075.5:ENST00000689739.1:ENST00000691071.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	93	2	5.73251	5.880025	6.02754	0.0133452	0.0027486	0.0789398	0.028553
chr20	35895977	35896077	7465906	0	+	0.36	(0.33,0.36]	chr20	777431	83	INTRON	INTRON	PHF20	ENSG00000025293.17	ENST00000374012.8:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5:ENST00000495338.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	95	2	5.54909	5.87991	6.21073	0.00843224	0.00379428	0.0617623	0.0355124
chr16	16158309	16158405	6556438	0	-	0.427083	(0.419,0.45]	chr16	653066	1	INTRON	INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	958	2	4.92754	5.87968	6.83182	7.35521e-4	9.59715e-7	0.0160044	1.02142e-4
chr8	503888	503988	3931443	0	-	0.54	(0.523,0.58]	chr8	375980	89	INTRON	INTRON	TDRP	ENSG00000180190.13	ENST00000523656.5:ENST00000324079.11	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.65959	5.8796	6.09961	0.00866655	0.0021416	0.0623824	0.0240825
chr17	6862030	6862130	6675268	0	+	0.51	(0.485,0.523]	chr17	669304	27	INTRON	INTRON	ALOX12P2	ENSG00000262943.8	ENST00000574727.5:ENST00000691074.1:ENST00000685813.1:ENST00000574271.6:ENST00000576636.6:ENST00000570835.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	0	90	2	5.8513	5.879495	5.90769	0.0131886	0.0011708	0.0785398	0.0157899
chr2	165891484	165891584	1300567	0	-	0.32	(0.29,0.33]	chr2	139463	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681167.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000680925.1:ENST00000679840.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	265	2	4.55174	5.87944	7.20714	9.24671e-4	1.39377e-4	0.018153	0.00349059
chr7	218655	218755	3305841	0	+	0.55	(0.523,0.58]	chr7	320161	93	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.8779	5.87931	5.88072	0.0126258	0.00121652	0.0761905	0.0162693
chr18	39305122	39305222	7147440	0	-	0.41	(0.39,0.419]	chr18	727037	60	INTRON	INTRON	MIR924HG	ENSG00000267374.3	ENST00000670992.1:ENST00000591629.2:ENST00000662708.1:ENST00000663592.1:ENST00000665749.1:ENST00000668737.1:ENST00000669590.1:ENST00000667816.1:ENST00000666361.1:ENST00000671441.1:ENST00000668052.1:ENST00000669399.1:ENST00000666611.1:ENST00000667009.1:ENST00000666148.1:ENST00000667500.1:ENST00000658829.1:ENST00000665844.1:ENST00000670388.1:ENST00000653594.1:ENST00000660099.1:ENST00000655721.1:ENST00000655349.1:ENST00000665416.1:ENST00000664913.1:ENST00000591469.1:ENST00000654837.1:ENST00000655720.1:ENST00000663128.1:ENST00000668391.1:ENST00000667701.1:ENST00000652839.1:ENST00000663244.1:ENST00000654975.1:ENST00000667895.1:ENST00000670943.1:ENST00000666091.1:ENST00000670383.1	lncRNA	lncRNA	lncRNA	lncRNA	0	92	2	5.87027	5.879265	5.88826	0.0169925	0.00198333	0.0889149	0.0229039
chr2	111421409	111421509	1252850	0	-	0.58	(0.523,0.58]	chr2	134896	431	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1	lncRNA	lncRNA	lncRNA	lncRNA	2	265	2	4.66945	5.879250000000001	7.08905	0.00137158	8.79485e-5	0.0226056	0.00248329
chr15	82498989	82499089	6340194	0	-	0.54	(0.523,0.58]	chr15	625050	207	INTRON	INTRON	GOLGA2P10	ENSG00000255769.7	ENST00000618004.4:ENST00000614347.4:ENST00000618267.4:ENST00000612379.4:ENST00000619738.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	94	2	5.53665	5.878959999999999	6.22127	0.00699217	0.00291382	0.0555241	0.0298557
chr11	70776158	70776258	5062043	0	-	0.53	(0.523,0.58]	chr11	492701	583	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	91	2	5.73609	5.87873	6.02137	0.00992924	0.0017613	0.0671959	0.0211077
chr4	70830268	70830364	2247810	0	-	0.5625	(0.523,0.58]	chr4	226672	19	INTRON	INTRON	GRSF1	ENSG00000132463.15	ENST00000254799.11:ENST00000505068.5:ENST00000499044.6:ENST00000502323.5:ENST00000514161.5:ENST00000506453.1:ENST00000508091.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	97	2	5.40225	5.87857	6.35489	0.00549977	0.00404292	0.0489559	0.0371291
chr21	29306021	29306121	7603710	0	+	0.38	(0.36,0.39]	chr21	794428	3	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000548219.5:ENST00000550131.5:ENST00000547141.5:ENST00000546469.5:ENST00000286800.8:ENST00000399921.5:ENST00000548467.1:ENST00000451655.5:ENST00000447177.5:ENST00000435072.1	protein_coding	protein_coding	protein_coding	protein_coding	0	95	2	5.57948	5.878405000000001	6.17733	0.0104543	0.00393844	0.0688771	0.0367306
chr7	74499401	74499501	3391821	0	+	0.51	(0.485,0.523]	chr7	327343	449	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	1	239	2	4.22531	5.878205	7.5311	0.0060869	9.74032e-6	0.0515813	5.03958e-4
chr13	72894748	72894848	5610903	0	+	0.33	(0.29,0.33]	chr13	552551	4	INTRON	INTRON	PIBF1	ENSG00000083535.16	ENST00000326291.11:ENST00000617689.4:ENST00000615625.1	protein_coding	protein_coding	protein_coding	protein_coding	0	94	2	5.52772	5.87815	6.22858	0.00614258	0.00324812	0.0517628	0.0319647
chrX	1417572	1417672	7965655	0	-	0.52	(0.485,0.523]	chrX	834255	2	SS5_PROX	SS5_PROX:INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.65601	5.878025	6.10004	0.00860355	0.00224147	0.0623467	0.024843
chr19	13147065	13147162	7339331	0	-	0.484536	(0.45,0.485]	chr19	759739	13	INTRON	INTRON	STX10	ENSG00000104915.15	ENST00000587230.6:ENST00000343587.9:ENST00000591843.1:ENST00000589083.5:ENST00000242770.9:ENST00000587318.5:ENST00000593126.5:ENST00000440593.3:ENST00000588848.5:ENST00000591197.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	95	2	5.51989	5.8779900000000005	6.23609	0.00778782	0.00357389	0.0590114	0.0342681
chr6	519680	519780	3077337	0	-	0.66	(0.58,1]	chr6	299297	196	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.43752	5.87786	6.3182	0.0156166	1.74994e-4	0.0849828	0.00410754
chr16	89432025	89432125	6661154	0	-	0.39	(0.36,0.39]	chr16	666753	3	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	212	2	5.15055	5.877835	6.60512	0.00506051	1.31543e-4	0.0465519	0.00335491
chr16	8640448	8640539	6381024	0	+	0.494505	(0.485,0.523]	chr16	631103	4	INTRON	INTRON	METTL22	ENSG00000067365.15	ENST00000163678.11:ENST00000381920.8:ENST00000561758.5:ENST00000568967.5:ENST00000572956.5:ENST00000561993.5:ENST00000563501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	90	2	5.87431	5.87773	5.88115	0.012541	0.00127835	0.0761905	0.0168904
chr9	112635174	112635273	4221667	0	+	0.40404	(0.39,0.419]	chr9	400316	161	INTRON	INTRON	KIAA1958	ENSG00000165185.15	ENST00000337530.11:ENST00000536272.5	protein_coding	protein_coding	protein_coding	protein_coding	0	95	2	5.57892	5.877445	6.17597	0.0107103	0.00396694	0.0701493	0.0368027
chr4	185251567	185251666	2171410	0	+	0.434343	(0.419,0.45]	chr4	219948	38	INTRON	INTRON	SNX25	ENSG00000109762.17	ENST00000504273.5:ENST00000618785.4:ENST00000652585.2:ENST00000264694.13:ENST00000506896.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	95	2	5.61031	5.87726	6.14421	0.0127879	0.004032	0.0769397	0.0371291
chr1	6033195	6033294	6768	0	+	0.575758	(0.523,0.58]	chr1	1420	54	INTRON	INTRON	KCNAB2	ENSG00000069424.16	ENST00000655548.1:ENST00000378111.6:ENST00000378097.6:ENST00000666163.1:ENST00000671676.1:ENST00000658883.1:ENST00000658691.1:ENST00000435937.6:ENST00000445501.6:ENST00000478098.5:ENST00000653262.1:ENST00000668706.1:ENST00000389632.9:ENST00000654144.1:ENST00000341524.6:ENST00000462676.3:ENST00000428161.6:ENST00000352527.6:ENST00000663169.1:ENST00000653635.1:ENST00000661248.1:ENST00000656198.1:ENST00000602612.5:ENST00000481789.2:ENST00000656746.1:ENST00000665338.1:ENST00000666299.1:ENST00000652845.1:ENST00000655703.1:ENST00000669250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	90	2	5.65749	5.877135	6.09678	0.0182707	6.74499e-4	0.0921579	0.0108081
chr19	4335237	4335336	7312823	0	-	0.515152	(0.485,0.523]	chr19	754660	8	INTRON	INTRON	STAP2	ENSG00000178078.12	ENST00000594605.6:ENST00000600324.5:ENST00000599736.5:ENST00000601482.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	97	2	5.39869	5.8770050000000005	6.35532	0.00545609	0.00421243	0.0486984	0.0380601
chr1	205746372	205746471	648792	0	-	0.363636	(0.36,0.39]	chr1	76905	152	INTRON	INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	1	252	2	4.16635	5.876725	7.5871	0.00846148	1.75499e-5	0.0617717	7.66163e-4
chr3	78996611	78996711	1837472	0	-	0.32	(0.29,0.33]	chr3	188611	573	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	1	199	2	4.61778	5.876025	7.13427	0.00107154	4.44335e-4	0.0197123	0.00805861
chr16	68319632	68319731	6476838	0	+	0.494949	(0.485,0.523]	chr16	643277	7	INTRON	INTRON	PRMT7	ENSG00000132600.18	ENST00000686904.1:ENST00000562381.7:ENST00000689486.1:ENST00000693200.1:ENST00000685141.1:ENST00000562050.6:ENST00000565745.6:ENST00000685109.1:ENST00000689637.1:ENST00000692867.1:ENST00000693670.1:ENST00000692760.1:ENST00000687654.1:ENST00000441236.3:ENST00000675132.1:ENST00000688470.1:ENST00000691833.1:ENST00000690432.1:ENST00000691804.1:ENST00000691961.1:ENST00000690932.1:ENST00000692632.1:ENST00000687444.1:ENST00000692283.1:ENST00000569571.5:ENST00000692621.1:ENST00000566341.5:ENST00000686053.1:ENST00000692966.1:ENST00000691663.1:ENST00000564050.6:ENST00000449359.7:ENST00000569047.7:ENST00000693309.1:ENST00000690311.1:ENST00000565356.5:ENST00000564441.6:ENST00000563520.5:ENST00000687558.1:ENST00000339507.9:ENST00000688969.1:ENST00000568975.5:ENST00000563562.5:ENST00000561806.5:ENST00000562456.1:ENST00000566430.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	259	2	5.01407	5.875815	6.73756	0.00131063	1.13097e-4	0.0220702	0.0030016
chr12	120998767	120998867	5341126	0	+	0.49	(0.485,0.523]	chr12	521577	1	SS3_PROX	SS3_PROX:INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000560968.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	90	2	5.65791	5.8755500000000005	6.09319	0.0181582	7.11715e-4	0.0921579	0.0112082
chr8	47882695	47882793	3973157	0	-	0.377551	(0.36,0.39]	chr8	380027	2	INTRON	INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	0	93	2	5.52987	5.87521	6.22055	0.0287883	8.14665e-4	0.115991	0.0123172
chr16	89915540	89915640	6526333	0	+	0.62	(0.58,1]	chr16	647719	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000267048:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000555427.1:ENST00000639847.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	0	92	2	5.26138	5.875185	6.48899	0.021217	1.02074e-4	0.0996078	0.00277572
chr8	18534749	18534848	3947309	0	-	0.474747	(0.45,0.485]	chr8	377156	76	UTR3	UTR3:EXON_MRNA	PSD3	ENSG00000156011.18	ENST00000327040.13:ENST00000440756.4:ENST00000286485.12:ENST00000523619.5:ENST00000428502.6	protein_coding	protein_coding	protein_coding	protein_coding	0	91	2	5.79191	5.8751750000000005	5.95844	0.0124835	0.00183113	0.0761905	0.0216571
chr7	149615503	149615603	3733329	0	-	0.38	(0.36,0.39]	chr7	358677	515	INTRON	INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5:ENST00000481762.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	92	2	5.6372	5.875165	6.11313	0.024533	0.00107374	0.106796	0.0148869
chr6	158020388	158020487	3059696	0	+	0.474747	(0.45,0.485]	chr6	297373	22	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	3	730	2	5.58709	5.87516	6.16323	4.78377e-4	9.04344e-7	0.0126479	9.79814e-5
chr11	112254179	112254279	4942406	0	+	0.5	(0.485,0.523]	chr11	476600	163	INTRON	INTRON	PTS	ENSG00000150787.8	ENST00000531673.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	243	2	4.72689	5.8749	7.02291	0.00232182	4.77916e-5	0.030354	0.00159602
chr8	65770046	65770146	3836747	0	+	0.32	(0.29,0.33]	chr8	368369	416	INTRON	INTRON	MTFR1	ENSG00000066855.16	ENST00000521247.6:ENST00000527155.5	protein_coding	protein_coding	protein_coding	protein_coding	0	101	2	5.24515	5.874535	6.50392	0.00631714	0.00368139	0.0501889	0.0389784
chr2	45521231	45521331	1138593	0	-	0.4	(0.39,0.419]	chr2	124602	325	INTRON	INTRON	SRBD1	ENSG00000068784.13	ENST00000263736.5:ENST00000475073.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	92	2	5.63585	5.874205	6.11256	0.025023	0.00108325	0.10758	0.0149525
chr18	9920011	9920111	7018272	0	+	0.41	(0.39,0.419]	chr18	716797	38	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000578314.1:ENST00000584796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	94	2	5.45224	5.87392	6.2956	0.032783	6.75278e-4	0.122593	0.010811
chr3	152356807	152356907	1599268	0	+	0.41	(0.39,0.419]	chr3	168991	212	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.80276	5.87389	5.94502	0.0155393	0.00233691	0.0849828	0.0257208
chr18	62553104	62553204	7079678	0	+	0.41	(0.39,0.419]	chr18	721900	7	INTRON	INTRON	ZCCHC2	ENSG00000141664.10	ENST00000269499.10:ENST00000585873.5:ENST00000591632.5:ENST00000621048.4:ENST00000586834.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	108	2	4.9406	5.873855	6.80711	0.0658437	1.69216e-4	0.162385	0.004014
chr12	46219886	46219986	5418973	0	-	0.53	(0.523,0.58]	chr12	530531	104	INTRON	INTRON	SLC38A1	ENSG00000111371.16	ENST00000398637.10:ENST00000439706.5:ENST00000549049.5:ENST00000546893.5:ENST00000552197.5:ENST00000612161.4:ENST00000549633.5:ENST00000551506.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	90	2	5.80873	5.873685	5.93864	0.0114442	0.00145893	0.0723462	0.0184991
chr7	158919947	158920043	3523190	0	+	0.583333	(0.58,1]	chr7	340299	7	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	109	2	4.95814	5.873525	6.7889099999999996	0.0074469	0.00104954	0.0553519	0.0194601
chr16	2164001	2164101	6372942	0	+	0.67	(0.58,1]	chr16	629422	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TRAF7	ENSG00000131653.13	ENST00000565383.5:ENST00000569686.5:ENST00000326181.11:ENST00000567653.5:ENST00000564067.5:ENST00000567645.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	181	2	4.99086	5.873455	6.75605	0.00112759	7.78776e-5	0.0202727	0.00227427
chr3	33088422	33088522	1733039	0	-	0.3	(0.29,0.33]	chr3	179306	108	INTRON	INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	90	2	5.62984	5.873175	6.11651	0.0174273	7.13924e-4	0.0901531	0.0112151
chr13	112526641	112526741	5752179	0	-	0.48	(0.45,0.485]	chr13	563914	3	SS5_PROX	SS5_PROX:INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000462580.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	93	2	5.42587	5.872865	6.31986	0.0290571	4.53935e-4	0.116079	0.00818426
chr4	39943151	39943251	2218811	0	-	0.32	(0.29,0.33]	chr4	224238	146	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.79977	5.87285	5.94593	0.0101801	0.00164635	0.068447	0.0202325
chr7	155677807	155677907	3518854	0	+	0.33	(0.29,0.33]	chr7	339784	45	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000287912.7:ENST00000401878.8:ENST00000392759.7:ENST00000307403.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	90	2	5.79977	5.87285	5.94593	0.0101801	0.00164635	0.068447	0.0202325
chr8	127102768	127102868	4065999	0	-	0.43	(0.419,0.45]	chr8	387342	206	INTRON	INTRON	CASC19	ENSG00000254166.3	ENST00000642100.1	lncRNA	lncRNA	lncRNA	lncRNA	0	99	2	5.39934	5.872835	6.34633	0.00923958	0.00646489	0.0644666	0.0503748
chr2	172028555	172028655	954889	0	+	0.36	(0.33,0.36]	chr2	104934	63	INTRON	INTRON	METAP1D	ENSG00000172878.14	ENST00000493035.5:ENST00000315796.5:ENST00000493742.1:ENST00000491440.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	92	2	5.53966	5.87236	6.20506	0.0251076	7.36479e-4	0.107672	0.0114654
chr11	70685806	70685906	5061137	0	-	0.47	(0.45,0.485]	chr11	492688	158	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	217	2	4.22618	5.872310000000001	7.51844	0.00140627	7.1335e-4	0.0180646	0.0157644
chr17	38742912	38743011	6895604	0	-	0.50505	(0.485,0.523]	chr17	700401	21	INTRON	INTRON	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000611883.4:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	2	263	2	4.58015	5.872195	7.16424	0.0011719	1.20666e-4	0.0206836	0.00316054
chr16	85400331	85400431	6517074	0	+	0.45	(0.419,0.45]	chr16	646391	410	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	96	2	5.52959	5.872185	6.21478	0.011428	0.00484244	0.0723462	0.0418176
chr21	33242675	33242774	7609197	0	+	0.464646	(0.45,0.485]	chr21	794620	3	INTRON	INTRON	IFNAR2	ENSG00000159110.21	ENST00000683941.1:ENST00000382264.7:ENST00000342136.9:ENST00000404220.7:ENST00000420068.1:ENST00000342101.7:ENST00000382238.6:ENST00000413881.5:ENST00000443073.5:ENST00000447980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	93	2	5.60298	5.872085	6.14119	0.00917101	0.00292492	0.064285	0.029882
chr6	43051763	43051863	3135550	0	-	0.46	(0.45,0.485]	chr6	305979	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CUL7	ENSG00000044090.13	ENST00000265348.9:ENST00000690231.1:ENST00000685042.1:ENST00000689256.1:ENST00000674112.2:ENST00000674134.1:ENST00000674100.1:ENST00000686442.1:ENST00000688302.1:ENST00000673753.1:ENST00000687225.1:ENST00000688707.1:ENST00000683493.1:ENST00000683160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	93	2	5.60298	5.872085	6.14119	0.00917101	0.00292492	0.064285	0.029882
chr16	85226902	85227002	6515337	0	+	0.6	(0.58,1]	chr16	646373	417	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.54978	5.87199	6.1942	0.00368616	0.00165911	0.0389784	0.0202545
chr7	76996927	76997026	3398769	0	+	0.626263	(0.58,1]	chr7	328286	62	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	90	2	5.54978	5.87199	6.1942	0.00368616	0.00165911	0.0389784	0.0202545
chr1	29237616	29237715	78384	0	+	0.767677	(0.58,1]	chr1	8914	5	INTRON	INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.47839	5.8719149999999996	6.26544	0.0145198	2.06156e-4	0.0823104	0.00461335
chr9	69053460	69053560	4163990	0	+	0.37	(0.36,0.39]	chr9	395732	2	SS5_PROX	SS5_PROX:INTRON	FXN	ENSG00000165060.15	ENST00000644653.1:ENST00000484259.3:ENST00000396366.6:ENST00000377270.8:ENST00000498653.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	206	2	4.92587	5.871835	6.8178	0.00347933	2.49899e-4	0.0378956	0.00531531
chr15	25282191	25282291	6066834	0	+	0.5	(0.485,0.523]	chr15	596040	23	INTRON	INTRON	SNHG14	ENSG00000224078.15	ENST00000656420.1:ENST00000424333.6:ENST00000653489.1:ENST00000663446.1:ENST00000670384.1:ENST00000665397.1:ENST00000669989.1:ENST00000665311.1:ENST00000668570.1:ENST00000669867.1:ENST00000669911.1:ENST00000453082.5:ENST00000654023.1:ENST00000663359.1:ENST00000653389.1:ENST00000656450.1:ENST00000669064.1:ENST00000664763.1:ENST00000660430.1:ENST00000656009.1:ENST00000666663.1:ENST00000660376.1:ENST00000669928.1:ENST00000452731.5:ENST00000654984.1:ENST00000665411.1:ENST00000656474.1:ENST00000658502.1:ENST00000671079.1:ENST00000663600.1:ENST00000554726.2:ENST00000657011.1	lncRNA	lncRNA	lncRNA	lncRNA	0	119	2	4.83072	5.8718	6.91288	0.0148956	0.00191584	0.0847741	0.0274102
chr4	152782024	152782124	2148776	0	+	0.38	(0.36,0.39]	chr4	217798	14	INTRON	INTRON	ARFIP1	ENSG00000164144.16	ENST00000451320.6:ENST00000429148.6:ENST00000353617.7:ENST00000405727.6:ENST00000356064.3:ENST00000510831.5:ENST00000509413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	92	2	5.6023	5.87152	6.14074	0.0258522	0.0010006	0.109555	0.0142243
chr6	80281014	80281114	2946053	0	+	0.39	(0.36,0.39]	chr6	289898	74	INTRON	INTRON	BCKDHB	ENSG00000083123.15	ENST00000356489.9:ENST00000320393.9	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.6023	5.87152	6.14074	0.0258522	0.0010006	0.109555	0.0142243
chr18	7676679	7676779	7006024	0	+	0.44	(0.419,0.45]	chr18	716101	1084	INTRON	INTRON	PTPRM	ENSG00000173482.17	ENST00000332175.12:ENST00000580170.6	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.6954	5.871320000000001	6.04724	0.0254103	0.00142238	0.108573	0.0181715
chr2	241303622	241303722	1396929	0	-	0.43	(0.419,0.45]	chr2	149481	10	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000310931.10:ENST00000391976.6:ENST00000428482.5:ENST00000441124.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000420451.5:ENST00000417540.5:ENST00000462130.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	92	2	5.86184	5.8711400000000005	5.88044	0.0192645	0.00223565	0.0954446	0.024843
chr16	85591128	85591228	6518984	0	+	0.58	(0.523,0.58]	chr16	646396	344	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	1	201	2	4.4841	5.87095	7.2578	9.82792e-4	6.06023e-4	0.0187972	0.0100269
chr2	191326741	191326841	977211	0	+	0.44	(0.419,0.45]	chr2	107540	302	INTRON	INTRON	MYO1B	ENSG00000128641.19	ENST00000418908.5:ENST00000339514.8:ENST00000392318.8:ENST00000304164.8:ENST00000438652.5:ENST00000451437.5:ENST00000471904.1:ENST00000392316.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	93	2	5.72351	5.870925	6.01834	0.015582500000000001	0.00310292	0.0849828	0.0311614
chr11	125612747	125612847	4961921	0	+	0.5	(0.485,0.523]	chr11	479505	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STT3A	ENSG00000134910.14	ENST00000529196.5:ENST00000392708.9:ENST00000649491.1:ENST00000531491.5:ENST00000526726.1:ENST00000524639.5:ENST00000531599.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	199	2	4.56508	5.870705	7.17633	0.00114421	4.94211e-4	0.0204418	0.00865935
chr1	2160204	2160304	4227	0	+	0.5	(0.485,0.523]	chr1	988	36	INTRON	INTRON	PRKCZ	ENSG00000067606.17	ENST00000378567.8:ENST00000400921.6:ENST00000461106.6:ENST00000479263.5:ENST00000478770.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	92	2	5.61619	5.870699999999999	6.12521	0.00823189	0.00247695	0.0608959	0.0266492
chr16	16274175	16274259	6408426	0	+	0.488095	(0.485,0.523]	chr16	633349	1	SS5_PROX	SS5_PROX:INTRON	NOMO3	ENSG00000103226.19	ENST00000676846.1:ENST00000399336.9:ENST00000677912.1:ENST00000677777.1:ENST00000678192.1:ENST00000678393.1:ENST00000678538.1:ENST00000679086.1:ENST00000574894.2:ENST00000678080.1:ENST00000677260.1:ENST00000676550.1:ENST00000263012.10:ENST00000575225.5:ENST00000677781.1:ENST00000677163.1:ENST00000678148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	112	2	4.96361	5.87009	6.77657	0.0112713	0.00248912	0.071709	0.0315244
chr19	1642367	1642467	7306933	0	-	0.65	(0.58,1]	chr19	753295	96	INTRON	INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000395423.7:ENST00000587235.6:ENST00000586318.1	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.39546	5.8696649999999995	6.34387	0.0168207	1.61506e-4	0.0884836	0.00387712
chr5	75363902	75364001	2456204	0	+	0.545455	(0.523,0.58]	chr5	245361	37	UTR3	UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000679456.1:ENST00000681567.1:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	341	2	5.70123	5.869395	6.03756	7.92905e-4	3.21633e-4	0.0120621	0.010233
chr12	132792579	132792677	5540387	0	-	0.683673	(0.58,1]	chr12	546816	9	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	87	2	5.75506	5.86914	5.98322	0.00562007	9.38062e-4	0.0493906	0.0135546
chr2	71346628	71346728	829013	0	+	0.34	(0.33,0.36]	chr2	93515	44	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000494621.5:ENST00000410075.5:ENST00000466975.5:ENST00000466330.5:ENST00000437658.2:ENST00000464375.5:ENST00000475743.1:ENST00000409544.5:ENST00000455226.5:ENST00000454278.5:ENST00000264447.9:ENST00000454122.1:ENST00000417778.5:ENST00000487707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	94	2	5.38284	5.868975	6.35511	0.0317908	4.93432e-4	0.121384	0.00865935
chr17	8358725	8358821	6849850	0	-	0.447917	(0.419,0.45]	chr17	694199	11	INTRON	INTRON	KRBA2	ENSG00000184619.8	ENST00000649935.1	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.82848	5.868785	5.90909	0.0184411	0.00242141	0.0927235	0.0261589
chr4	914536	914628	2178767	0	-	0.728261	(0.58,1]	chr4	220690	5	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000512325.3:ENST00000510022.5:ENST00000511229.5:ENST00000511983.5:ENST00000628912.1:ENST00000513935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	89	2	5.59324	5.868755	6.14427	0.00407804	0.0014734	0.0413652	0.0185589
chr15	30968510	30968608	6212384	0	-	0.397959	(0.39,0.419]	chr15	611669	1	INTRON	INTRON	MTMR10	ENSG00000166912.17	ENST00000435680.6:ENST00000568604.5:ENST00000568547.5:ENST00000567567.5:ENST00000563714.5:ENST00000565728.5:ENST00000564787.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	95	2	5.53798	5.868735	6.19949	0.0103045	0.0043589	0.0684871	0.0391245
chr10	127339584	127339682	4611324	0	+	0.5	(0.485,0.523]	chr10	440809	1	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2:ENST00000484400.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	90	2	5.58723	5.868650000000001	6.15007	0.0203514	6.0909e-4	0.0979211	0.0100377
chr2	206804287	206804387	1002086	0	+	0.49	(0.485,0.523]	chr2	110058	26	INTRON	INTRON	ENSG00000229321	ENSG00000229321.2	ENST00000658889.1:ENST00000658291.1	lncRNA	lncRNA	lncRNA	lncRNA	0	95	2	5.26375	5.86863	6.47351	0.0335928	2.44978e-4	0.124319	0.00523316
chr6	144631264	144631364	3023380	0	+	0.41	(0.39,0.419]	chr6	295440	473	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000367526.8	protein_coding	protein_coding	protein_coding	protein_coding	1	205	2	4.77582	5.868435	6.96105	0.00276944	3.82748e-4	0.0332691	0.00724619
chr18	76926636	76926736	7096454	0	+	0.34	(0.33,0.36]	chr18	722706	2	SS3_PROX	SS3_PROX:INTRON	ZNF236	ENSG00000130856.17	ENST00000320610.14:ENST00000543926.6:ENST00000253159.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	104	2	5.00642	5.86798	6.72954	0.0542065	1.75295e-4	0.151733	0.00411175
chr22	38818451	38818549	7812845	0	-	0.336735	(0.33,0.36]	chr22	819285	1	UTR3	UTR3:EXON_MRNA	NPTXR	ENSG00000221890.6	ENST00000333039.4	protein_coding	protein_coding	protein_coding	protein_coding	0	91	2	5.77893	5.86758	5.95623	0.0129408	0.00218403	0.0775979	0.0244273
chr5	94089545	94089645	2729088	0	-	0.35	(0.33,0.36]	chr5	267908	144	INTRON	INTRON	FAM172A	ENSG00000113391.19	ENST00000395965.8:ENST00000505869.5:ENST00000509163.5:ENST00000502503.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	91	2	5.77893	5.86758	5.95623	0.0129408	0.00218403	0.0775979	0.0244273
chr19	55240844	55240944	7407342	0	-	0.65	(0.58,1]	chr19	771266	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PPP6R1	ENSG00000105063.19	ENST00000412770.7:ENST00000587283.5:ENST00000591323.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	86	2	5.83375	5.8671500000000005	5.90055	0.00751249	6.1741e-4	0.0576451	0.0101143
chrX	47007757	47007857	7876335	0	+	0.38	(0.36,0.39]	chrX	825356	91	INTRON	INTRON	JADE3	ENSG00000102221.14	ENST00000611250.4:ENST00000424392.5:ENST00000614628.5:ENST00000455411.1	protein_coding	protein_coding	protein_coding	protein_coding	0	91	2	5.73711	5.86709	5.99707	0.0210765	0.00143949	0.0996078	0.0183435
chrX	96887900	96888000	7916774	0	+	0.39	(0.36,0.39]	chrX	829084	58	INTRON	INTRON	DIAPH2	ENSG00000147202.19	ENST00000373049.8:ENST00000324765.13	protein_coding	protein_coding	protein_coding	protein_coding	0	91	2	5.73711	5.86709	5.99707	0.0210765	0.00143949	0.0996078	0.0183435
chr14	89204235	89204335	6026137	0	-	0.58	(0.523,0.58]	chr14	591423	134	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000555010.1:ENST00000557718.5:ENST00000553353.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	194	2	4.80707	5.86695	6.92683	0.00188118	2.35254e-4	0.0270971	0.00508037
chr16	67229470	67229552	6607473	0	-	0.536585	(0.523,0.58]	chr16	660982	2	UTR3	UTR3:EXON_MRNA	FHOD1	ENSG00000135723.14	ENST00000569085.1:ENST00000258201.9:ENST00000567752.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	91	2	5.65959	5.866795	6.074	0.00906277	0.0021416	0.0637469	0.0240825
chr20	4955301	4955401	7518113	0	-	0.38	(0.36,0.39]	chr20	784900	222	INTRON	INTRON	SLC23A2	ENSG00000089057.15	ENST00000379333.5:ENST00000338244.6:ENST00000468355.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	92	2	5.73251	5.86675	6.00099	0.0139273	0.0027486	0.0805916	0.028553
chr1	94421540	94421639	186882	0	+	0.383838	(0.36,0.39]	chr1	20287	22	INTRON	INTRON	ABCD3	ENSG00000117528.14	ENST00000370214.9:ENST00000647998.2:ENST00000315713.5:ENST00000468860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	248	2	4.37395	5.866605	7.35926	0.00586794	3.44393e-5	0.0506158	0.00124977
chr11	73121133	73121233	5073768	0	-	0.47	(0.45,0.485]	chr11	493659	370	INTRON	INTRON	FCHSD2	ENSG00000137478.15	ENST00000409418.9:ENST00000311172.11:ENST00000409314.5:ENST00000458644.6:ENST00000409853.5:ENST00000422375.1	protein_coding	protein_coding	protein_coding	protein_coding	1	241	2	4.25873	5.86647	7.47421	0.00628767	1.51996e-5	0.0523832	6.9067e-4
chr1	32767386	32767486	84853	0	+	0.47	(0.45,0.485]	chr1	9827	2	SS3_PROX	SS3_PROX:INTRON	KIAA1522	ENSG00000162522.11	ENST00000401073.7:ENST00000468130.1:ENST00000373481.7:ENST00000294521.7:ENST00000373480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	91	2	5.71928	5.86617	6.01306	0.0113949	0.00219685	0.0723462	0.0245167
chr7	27114242	27114342	3559804	0	-	0.46	(0.45,0.485]	chr7	343721	5	INTRON	INTRON	HOXA3	ENSG00000105997.23	ENST00000396352.8:ENST00000612286.5:ENST00000317201.7:ENST00000522788.5:ENST00000521401.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	91	2	5.71928	5.86617	6.01306	0.0113949	0.00219685	0.0723462	0.0245167
chr6	128516229	128516329	3257133	0	-	0.48	(0.45,0.485]	chr6	315230	240	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000524534.5:ENST00000525459.1:ENST00000392449.4:ENST00000532751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	97	2	5.38553	5.86604	6.34655	0.00642055	0.00490471	0.0529785	0.0422077
chr5	61157898	61157995	2682203	0	-	0.412371	(0.39,0.419]	chr5	264729	3	UTR3	UTR3:EXON_MRNA	SMIM15	ENSG00000188725.8	ENST00000339020.8	protein_coding	protein_coding	protein_coding	protein_coding	0	91	2	5.82918	5.86603	5.90288	0.0186329	0.00183094	0.0932878	0.0216571
chr17	43546014	43546114	6739025	0	+	0.68	(0.58,1]	chr17	678633	8	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	181	2	5.07859	5.8656500000000005	6.65271	0.00141059	5.81077e-5	0.0229261	0.00182855
chr6	34673755	34673855	3125047	0	-	0.5	(0.485,0.523]	chr6	304727	19	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	0	93	2	5.53308	5.865625	6.19817	0.00723584	0.00304306	0.0565323	0.0306636
chr20	22560651	22560750	7536730	0	-	0.40404	(0.39,0.419]	chr20	786537	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	LINC00261	ENSG00000259974.4	ENST00000420070.1:ENST00000564492.1:ENST00000638550.3	lncRNA	lncRNA	lncRNA	lncRNA	6	1181	2	4.57749	5.865445	7.1534	8.27788e-4	2.87478e-7	0.017118	4.59379e-5
chr7	1023404	1023504	3526457	0	-	0.69	(0.58,1]	chr7	340572	129	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	86	2	5.86491	5.86522	5.86553	0.00707578	6.8352e-4	0.0558168	0.0108717
chr12	109222306	109222406	5322647	0	+	0.54	(0.523,0.58]	chr12	518616	4	SS3_PROX	SS3_PROX:INTRON	ACACB	ENSG00000076555.16	ENST00000338432.12:ENST00000377848.7:ENST00000377854.9	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.73609	5.8652	5.99431	0.0104033	0.0017613	0.0686837	0.0211077
chr20	46724540	46724640	7488451	0	+	0.43	(0.419,0.45]	chr20	780624	1	SS3_PROX	SS3_PROX:INTRON	SLC2A10	ENSG00000197496.6	ENST00000359271.4:ENST00000611837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	94	2	5.61031	5.865105	6.1199	0.0132894	0.004032	0.0787251	0.0371291
chr20	63730422	63730522	7509343	0	+	0.5	(0.485,0.523]	chr20	783515	209	INTRON	INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	89	2	5.75784	5.865024999999999	5.97221	0.0154142	9.86421e-4	0.0849828	0.0140716
chr6	48068055	48068152	3146629	0	-	0.453608	(0.45,0.485]	chr6	306787	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PTCHD4	ENSG00000244694.8	ENST00000339488.9:ENST00000398738.3:ENST00000679966.1	protein_coding	protein_coding	protein_coding	protein_coding	0	93	2	5.38503	5.864625	6.34422	0.0308908	4.24458e-4	0.119556	0.00777807
chr10	48042425	48042524	4680790	0	-	0.515152	(0.485,0.523]	chr10	446508	30	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	0	89	2	5.7253	5.864355	6.00341	0.0162644	9.07333e-4	0.0873195	0.0132726
chr11	18010833	18010930	5015367	0	-	0.505155	(0.485,0.523]	chr11	484704	3	INTRON	INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528200.5:ENST00000532265.5:ENST00000529728.5:ENST00000530613.5:ENST00000532389.5:ENST00000530925.5:ENST00000533328.5:ENST00000532212.5:ENST00000524716.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	89	2	5.7253	5.864355	6.00341	0.0162644	9.07333e-4	0.0873195	0.0132726
chr17	72560717	72560817	6963918	0	-	0.52	(0.485,0.523]	chr17	710389	263	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	4	360	2	4.14534	5.864085	7.58283	5.05626e-4	1.4363e-4	0.0130427	0.00357046
chr7	65909619	65909719	3378423	0	+	0.37	(0.36,0.39]	chr7	326095	357	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	1	209	2	4.47956	5.864065	7.24857	0.00159081	8.551e-4	0.024604	0.0127303
chr20	61977023	61977117	7582889	0	-	0.744681	(0.58,1]	chr20	792277	3	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000474089.5:ENST00000692470.1:ENST00000252996.9:ENST00000436129.2:ENST00000608458.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	189	2	4.44822	5.8640550000000005	7.27989	4.4502e-4	3.49762e-4	0.0106878	0.00806076
chr19	4493202	4493302	7193768	0	+	0.52	(0.485,0.523]	chr19	732771	1	SS3_PROX	SS3_PROX:INTRON	HDGFL2	ENSG00000167674.15	ENST00000616600.5:ENST00000621835.4:ENST00000589486.5:ENST00000615225.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	100	2	5.25048	5.864039999999999	6.4776	0.0059614	0.00436205	0.0479866	0.0427656
chr6	158328267	158328367	3061804	0	+	0.42	(0.419,0.45]	chr6	297592	136	INTRON	INTRON	ENSG00000274023:TULP4	ENSG00000274023.1:ENSG00000130338.13	ENST00000619713.1:ENST00000367097.8:ENST00000367094.6:ENST00000616856.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	1	216	2	5.20449	5.8640349999999994	6.52358	0.00689831	1.25773e-4	0.0553728	0.00325222
chr19	10920245	10920335	7205600	0	+	0.622222	(0.58,1]	chr19	735191	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CARM1	ENSG00000142453.12	ENST00000327064.9:ENST00000590699.5:ENST00000344150.8:ENST00000586221.5:ENST00000586508.1:ENST00000586298.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	88	2	5.63543	5.863995	6.09256	0.00452436	0.00131165	0.0436138	0.0171898
chr4	23801130	23801229	2208701	0	-	0.434343	(0.419,0.45]	chr4	223249	49	INTRON	INTRON	PPARGC1A	ENSG00000109819.9	ENST00000509702.5:ENST00000264867.7:ENST00000613098.4:ENST00000506055.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	255	2	4.5126	5.863655	7.21471	0.00515708	6.2377e-5	0.0472296	0.00192539
chr16	1459412	1459503	6532766	0	-	0.67033	(0.58,1]	chr16	648973	1	SS3_PROX	SS3_PROX:INTRON	CLCN7	ENSG00000103249.18	ENST00000382745.9:ENST00000448525.5:ENST00000262318.12:ENST00000569851.6	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.30747	5.862865	6.41826	0.0196049	1.27804e-4	0.0955413	0.00328053
chr7	756185	756281	3306575	0	+	0.59375	(0.58,1]	chr7	320230	10	INTRON	INTRON	DNAAF5	ENSG00000164818.16	ENST00000297440.11:ENST00000437419.5:ENST00000440747.5	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.63118	5.86284	6.0945	0.0109983	3.47472e-4	0.0708586	0.00673552
chr2	138529483	138529582	904162	0	+	0.494949	(0.485,0.523]	chr2	101929	270	INTRON	INTRON	SPOPL	ENSG00000144228.9	ENST00000280098.9:ENST00000430968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	195	2	4.7014	5.862745	7.02409	0.00154346	3.32408e-4	0.02427	0.00652409
chr1	1108860	1108959	380271	0	-	0.646465	(0.58,1]	chr1	42816	16	INTRON	INTRON	C1orf159	ENSG00000131591.18	ENST00000379339.5:ENST00000379325.7:ENST00000421241.7:ENST00000467751.5:ENST00000477196.5:ENST00000434641.5:ENST00000482816.5:ENST00000462097.5:ENST00000475119.5:ENST00000472741.5:ENST00000480643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	187	2	5.3257	5.862675	6.39965	0.00241374	2.51075e-5	0.0309229	9.91699e-4
chr10	103702706	103702806	4757127	0	-	0.49	(0.485,0.523]	chr10	454791	92	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	92	2	5.57523	5.862585	6.14994	0.00788098	0.00274261	0.059464500000000003	0.028553
chr14	104889758	104889858	5926123	0	+	0.57	(0.523,0.58]	chr14	579997	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.65749	5.86248	6.06747	0.0182707	7.30845e-4	0.0921579	0.0113963
chr2	159267216	159267316	1287703	0	-	0.35	(0.33,0.36]	chr2	138404	70	INTRON	INTRON	WDSUB1	ENSG00000196151.11	ENST00000359774.9:ENST00000358147.8:ENST00000409990.7:ENST00000392796.7:ENST00000409124.1	protein_coding	protein_coding	protein_coding	protein_coding	1	207	2	4.4438	5.862360000000001	7.28092	0.00119342	8.61808e-4	0.020937	0.0127848
chr19	4335336	4335435	7312824	0	-	0.525253	(0.523,0.58]	chr19	754660	9	INTRON	INTRON	STAP2	ENSG00000178078.12	ENST00000594605.6:ENST00000600324.5:ENST00000599736.5:ENST00000601482.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	89	2	5.84373	5.8622250000000005	5.88072	0.0126258	0.00133116	0.0761905	0.0173248
chr3	31723516	31723615	1727818	0	-	0.444444	(0.419,0.45]	chr3	179001	145	INTRON	INTRON	OSBPL10	ENSG00000144645.15	ENST00000429492.6:ENST00000396556.7:ENST00000438237.6:ENST00000673388.1	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.75936	5.862055	5.96475	0.0169309	0.00285253	0.088829	0.0294017
chr16	78850136	78850236	6502920	0	+	0.32	(0.29,0.33]	chr16	645717	698	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	98	2	5.1277	5.861845	6.59599	0.0382902	1.86005e-4	0.131324	0.00430463
chr1	156090170	156090270	250780	0	+	0.38	(0.36,0.39]	chr1	29430	3	SS3_PROX	SS3_PROX:INTRON	LMNA	ENSG00000160789.24	ENST00000502751.5:ENST00000368301.6:ENST00000470835.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	93	2	5.61929	5.861835	6.10438	0.0117824	0.00359045	0.073726	0.0342681
chr20	17983180	17983279	7441421	0	+	0.363636	(0.36,0.39]	chr20	774379	69	INTRON	INTRON	MGME1	ENSG00000125871.14	ENST00000377710.10:ENST00000377709.1:ENST00000377704.4:ENST00000463219.1:ENST00000467391.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	93	2	5.61929	5.861835	6.10438	0.0117824	0.00359045	0.073726	0.0342681
chr22	50675351	50675451	7754917	0	+	0.62	(0.58,1]	chr22	812694	1	SS5_PROX	SS5_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	90	2	5.50497	5.861745	6.21852	0.00350812	0.00187297	0.0379357	0.0219434
chr22	32814304	32814403	7717752	0	+	0.363636	(0.36,0.39]	chr22	807776	118	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	0	109	2	5.04893	5.861445	6.67396	0.0125348	0.00448681	0.0765738	0.0436138
chr9	93615269	93615369	4184042	0	+	0.41	(0.39,0.419]	chr9	397705	380	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.52851	5.861185	6.19386	0.029339	8.79539e-4	0.116079	0.0129939
chr15	68802921	68803020	6311982	0	-	0.454545	(0.45,0.485]	chr15	622245	6	INTRON	INTRON	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6:ENST00000267918.9:ENST00000560303.1:ENST00000495420.5:ENST00000495764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	90	2	5.79191	5.8611249999999995	5.93034	0.0130794	0.00183113	0.0782396	0.0216571
chr1	119726055	119726153	224065	0	+	0.469388	(0.45,0.485]	chr1	24645	7	INTRON	INTRON	PHGDH	ENSG00000092621.13	ENST00000641597.1:ENST00000493622.5:ENST00000641213.1:ENST00000641947.1:ENST00000642041.1:ENST00000641074.1:ENST00000641115.1:ENST00000642021.1:ENST00000641491.1:ENST00000641023.2:ENST00000369409.9:ENST00000641573.1:ENST00000641513.1:ENST00000641375.1:ENST00000641891.1:ENST00000641570.1:ENST00000641587.1:ENST00000641371.1:ENST00000462324.2:ENST00000641272.1:ENST00000641247.1:ENST00000641756.1:ENST00000641711.1:ENST00000641927.1:ENST00000641314.1:ENST00000369407.3:ENST00000641811.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	207	2	5.27224	5.8607	6.44916	0.00535292	6.90989e-5	0.0480663	0.00208272
chr16	11731657	11731753	6549417	0	-	0.395833	(0.39,0.419]	chr16	651902	5	INTRON	INTRON	TXNDC11	ENSG00000153066.13	ENST00000283033.10:ENST00000356957.7:ENST00000575591.1:ENST00000576969.5:ENST00000571882.1:ENST00000573174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	92	2	5.69518	5.86068	6.02618	0.0136549	0.00302238	0.0798074	0.0305643
chr1	44810722	44810822	115006	0	+	0.52	(0.485,0.523]	chr1	14285	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	BTBD19	ENSG00000222009.9	ENST00000450269.6:ENST00000409335.6:ENST00000439563.2:ENST00000485668.5:ENST00000482715.5:ENST00000475105.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	89	2	5.84014	5.860645	5.88115	0.012541	0.00139792	0.0761905	0.0179863
chr2	111421309	111421409	1252849	0	-	0.63	(0.58,1]	chr2	134896	430	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1	lncRNA	lncRNA	lncRNA	lncRNA	0	89	2	5.35214	5.860620000000001	6.3691	0.0181452	1.49225e-4	0.0921579	0.00367368
chr17	19962339	19962439	6870285	0	-	0.38	(0.36,0.39]	chr17	696654	1	SS5_PROX	SS5_PROX:INTRON	AKAP10	ENSG00000108599.15	ENST00000225737.11:ENST00000395536.7:ENST00000582611.5:ENST00000572155.1:ENST00000572341.5:ENST00000576896.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	95	2	5.49642	5.86021	6.224	0.00967792	0.00476539	0.0661428	0.0414441
chr16	50620701	50620801	6452135	0	+	0.48	(0.45,0.485]	chr16	639912	47	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	1	198	2	4.95226	5.8600200000000005	6.76778	0.0029996	1.80421e-4	0.0348875	0.00419972
chr7	47473010	47473109	3588538	0	-	0.656566	(0.58,1]	chr7	346123	199	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	3	299	2	3.8052	5.86001	7.91482	3.9134e-4	7.93839e-5	0.00735497	0.00494878
chr1	153743962	153744062	246931	0	+	0.47	(0.45,0.485]	chr1	28262	22	INTRON	INTRON	INTS3	ENSG00000143624.14	ENST00000318967.7:ENST00000435409.6:ENST00000481797.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	92	2	5.60298	5.859719999999999	6.11646	0.00956667	0.00292492	0.0658012	0.029882
chr2	54578777	54578877	799502	0	+	0.4	(0.39,0.419]	chr2	90800	195	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7:ENST00000333896.5	protein_coding	protein_coding	protein_coding	protein_coding	3	334	2	4.34281	5.859719999999999	7.37663	0.00129529	1.85731e-4	0.0219863	0.00430068
chr6	144690227	144690327	3023972	0	+	0.56	(0.523,0.58]	chr6	295451	113	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000367526.8	protein_coding	protein_coding	protein_coding	protein_coding	0	91	2	5.61976	5.859685000000001	6.09961	0.00866655	0.00236826	0.0623824	0.0259199
chr9	134338736	134338835	4260810	0	+	0.686869	(0.58,1]	chr9	406311	117	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	86	2	5.59447	5.8594550000000005	6.12444	0.0117666	3.17437e-4	0.0737098	0.00632787
chr18	21579745	21579844	7128486	0	-	0.575758	(0.523,0.58]	chr18	725442	36	INTRON	INTRON	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	89	2	5.80873	5.85935	5.90997	0.012016	0.00145893	0.0743424	0.0184991
chr2	233164524	233164624	1058271	0	+	0.56	(0.523,0.58]	chr2	115119	1	SS5_PROX	SS5_PROX:INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493078.1:ENST00000472517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	89	2	5.80873	5.85935	5.90997	0.012016	0.00145893	0.0743424	0.0184991
chr5	171913842	171913942	2809372	0	-	0.46	(0.45,0.485]	chr5	275170	1	SS5_PROX	SS5_PROX:INTRON	FBXW11	ENSG00000072803.18	ENST00000296933.10:ENST00000517395.6:ENST00000265094.9:ENST00000393802.6:ENST00000523843.5:ENST00000519693.5:ENST00000520376.1:ENST00000518752.1:ENST00000522507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	200	2	4.57535	5.85929	7.14323	0.00147887	5.36627e-4	0.023604	0.0091711
chr3	60258027	60258127	1796187	0	-	0.41	(0.39,0.419]	chr3	186807	1773	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	95	2	5.49586	5.859245	6.22263	0.00991891	0.00479873	0.0671959	0.0416285
chr1	43563209	43563309	107071	0	+	0.59	(0.58,1]	chr1	13192	89	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	86	2	5.79283	5.859055	5.92528	0.0062948	8.4246e-4	0.0523832	0.0125912
chr2	239347182	239347281	1392182	0	-	0.282828	[0,0.29]	chr2	148752	227	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	192	2	5.18264	5.85865	6.53466	0.00203663	6.26244e-5	0.0283511	0.00192946
chr2	61930607	61930707	809482	0	+	0.44	(0.419,0.45]	chr2	91997	116	INTRON	INTRON	COMMD1	ENSG00000173163.11	ENST00000472729.1:ENST00000471704.1:ENST00000445644.5:ENST00000311832.6:ENST00000455659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	91	2	5.79088	5.858599999999999	5.92632	0.022052	0.00191339	0.101502	0.0223437
chr4	5783151	5783251	2009957	0	+	0.44	(0.419,0.45]	chr4	205033	2	SS3_PROX	SS3_PROX:INTRON	EVC	ENSG00000072840.13	ENST00000264956.11	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.55739	5.8580950000000005	6.1588	0.0310506	0.00107628	0.119758	0.0148869
chr9	126409293	126409393	4241455	0	+	0.5	(0.485,0.523]	chr9	402686	118	INTRON	INTRON	MVB12B	ENSG00000196814.15	ENST00000361171.8:ENST00000470567.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	89	2	5.623	5.8580950000000005	6.09319	0.0192139	7.11715e-4	0.095424900000000007	0.0112082
chr4	914904	914997	2178771	0	-	0.645161	(0.58,1]	chr4	220690	9	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000512325.3:ENST00000510022.5:ENST00000511229.5:ENST00000511983.5:ENST00000628912.1:ENST00000513935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	87	2	5.67642	5.857675	6.03893	0.00503456	0.00117039	0.0464858	0.0157899
chr2	174352225	174352324	1320996	0	-	0.343434	(0.33,0.36]	chr2	141071	1	INTRON	INTRON	CIR1	ENSG00000138433.16	ENST00000342016.8	protein_coding	protein_coding	protein_coding	protein_coding	1	232	2	3.99628	5.85737	7.71846	0.0027942	5.08267e-4	0.0289034	0.0130957
chr17	9324111	9324211	6852490	0	-	0.44	(0.419,0.45]	chr17	694494	508	INTRON	INTRON	STX8	ENSG00000170310.15	ENST00000306357.9:ENST00000575858.5:ENST00000570583.5:ENST00000574431.5:ENST00000575294.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	94	2	5.57051	5.85736	6.14421	0.0127879	0.00441471	0.0769397	0.0393688
chr12	27748383	27748483	5193682	0	+	0.47	(0.45,0.485]	chr12	505315	104	INTRON	INTRON	MRPS35	ENSG00000061794.13	ENST00000081029.8:ENST00000538315.5:ENST00000542791.1	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.75605	5.857245000000001	5.95844	0.0124835	0.002004	0.0761905	0.0230381
chr16	85522480	85522580	6518296	0	+	0.56	(0.523,0.58]	chr16	646391	1632	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	93	2	5.49322	5.857245	6.22127	0.00699217	0.00324246	0.0555241	0.0319521
chr22	46648122	46648222	7744659	0	+	0.49	(0.485,0.523]	chr22	812052	98	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	0	101	2	5.19749	5.85683	6.51617	0.00672953	0.00406194	0.0519464	0.0413652
chr19	19890476	19890575	7228341	0	+	0.474747	(0.45,0.485]	chr19	739977	100	INTRON	INTRON	ZNF253	ENSG00000256771.5	ENST00000589717.2:ENST00000592725.1:ENST00000355650.4	protein_coding	protein_coding	protein_coding	protein_coding	0	95	2	5.43172	5.85651	6.2813	0.00719875	0.00440365	0.056408	0.0393688
chr1	26854720	26854818	69806	0	+	0.428571	(0.419,0.45]	chr1	7824	10	UTR3	UTR3:EXON_MRNA:INTRON	ZDHHC18	ENSG00000204160.12	ENST00000374142.9:ENST00000488397.3	protein_coding	protein_coding	protein_coding	protein_coding	3	339	2	4.35403	5.856199999999999	7.35837	0.00161543	1.98689e-4	0.0248769	0.00451239
chr16	89349892	89349992	6660317	0	-	0.4	(0.39,0.419]	chr16	666695	62	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	247	2	4.28436	5.85595	7.42754	0.00698815	2.85001e-5	0.0555241	0.00108389
chr16	85373742	85373842	6516808	0	+	0.72	(0.58,1]	chr16	646391	144	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.59324	5.855945	6.11865	0.00429384	0.0014734	0.042386	0.0185589
chr10	79164730	79164830	4533004	0	+	0.55	(0.523,0.58]	chr10	432438	22	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	204	2	4.34417	5.855729999999999	7.36729	9.01636e-4	7.89787e-4	0.0167041	0.0132389
chr6	131584343	131584443	3262304	0	-	0.36	(0.33,0.36]	chr6	315611	97	INTRON	INTRON	MED23	ENSG00000112282.18	ENST00000354577.8	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.32491	5.855585	6.38626	0.00634179	0.00621741	0.052147	0.0501889
chr7	75919494	75919592	3396648	0	+	0.346939	(0.33,0.36]	chr7	328048	4	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	201	2	4.63245	5.85545	7.07845	0.00175547	5.12751e-4	0.0260004	0.0088952
chr10	79175216	79175316	4533109	0	+	0.67	(0.58,1]	chr10	432438	127	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.75506	5.8548	5.95454	0.0059453	9.38062e-4	0.0506158	0.0135546
chr8	11853011	11853103	3936628	0	-	0.597826	(0.58,1]	chr8	376317	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000676952.1:ENST00000679121.1:ENST00000677283.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000524654.2:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6:ENST00000525315.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	86	2	5.75506	5.8548	5.95454	0.0059453	9.38062e-4	0.0506158	0.0135546
chr9	133734603	133734703	4427929	0	-	0.64	(0.58,1]	chr9	423135	4	SS3_PROX	SS3_PROX:INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000427237.6:ENST00000298628.6	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.75506	5.8548	5.95454	0.0059453	9.38062e-4	0.0506158	0.0135546
chr17	80223837	80223936	6806857	0	+	0.434343	(0.419,0.45]	chr17	687275	1	INTRON	INTRON	SLC26A11	ENSG00000181045.15	ENST00000361193.8:ENST00000546047.6:ENST00000411502.7:ENST00000571888.5:ENST00000576126.5:ENST00000572725.5:ENST00000571564.5:ENST00000571176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	91	2	5.82848	5.8544599999999996	5.88044	0.0192645	0.00242141	0.0954446	0.0261589
chr3	134528548	134528648	1573442	0	+	0.5	(0.485,0.523]	chr3	166854	209	INTRON	INTRON	CEP63	ENSG00000182923.20	ENST00000683997.1:ENST00000683596.1:ENST00000684574.1:ENST00000650279.2:ENST00000683940.1:ENST00000332047.10:ENST00000684217.1:ENST00000684256.1:ENST00000354446.7:ENST00000683556.1:ENST00000684588.1:ENST00000682593.1:ENST00000682858.1:ENST00000683949.1:ENST00000684170.1:ENST00000682458.1:ENST00000682190.1:ENST00000682042.1:ENST00000683118.1:ENST00000511574.6:ENST00000682822.1:ENST00000620544.5:ENST00000383229.8:ENST00000675561.1:ENST00000683245.1:ENST00000513295.2:ENST00000508778.2:ENST00000684481.1:ENST00000514678.2:ENST00000682717.1:ENST00000683190.1:ENST00000682689.1:ENST00000684677.1:ENST00000682316.1:ENST00000683177.1:ENST00000683861.1:ENST00000512894.6:ENST00000682013.1:ENST00000682007.1:ENST00000682402.1:ENST00000682954.1:ENST00000684777.1:ENST00000682670.1:ENST00000682937.1:ENST00000504013.6:ENST00000682072.1:ENST00000683931.1:ENST00000683732.1:ENST00000684060.1:ENST00000513612.7:ENST00000606977.5:ENST00000683608.1:ENST00000682685.1:ENST00000684492.1:ENST00000682800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	99	2	5.25048	5.854205	6.45793	0.0059614	0.00452302	0.0479866	0.0436138
chr11	64144064	64144164	5049018	0	-	0.68	(0.58,1]	chr11	490257	173	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	179	2	4.78022	5.8542000000000005	6.92818	7.72338e-4	1.55453e-4	0.0164417	0.00378153
chrX	124018423	124018523	7947417	0	+	0.5	(0.485,0.523]	chrX	831497	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	STAG2	ENSG00000101972.20	ENST00000394477.5:ENST00000218089.13:ENST00000455404.5:ENST00000483575.5:ENST00000687810.1:ENST00000687071.1:ENST00000469481.1:ENST00000458700.5:ENST00000371160.5:ENST00000435103.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686802.1:ENST00000691383.1:ENST00000686127.1:ENST00000371144.7:ENST00000458176.5:ENST00000466748.5:ENST00000471107.1:ENST00000428941.5:ENST00000435215.5:ENST00000394478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	89	2	5.76929	5.854175	5.93906	0.0113657	0.00167976	0.0723462	0.0203806
chr2	109582036	109582136	1245671	0	-	0.48	(0.45,0.485]	chr2	134268	69	INTRON	INTRON	SEPTIN10	ENSG00000186522.15	ENST00000397712.7:ENST00000356688.8:ENST00000397714.6:ENST00000437928.5:ENST00000415095.5:ENST00000486678.6:ENST00000425498.1:ENST00000493445.5:ENST00000423520.5:ENST00000461295.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	256	2	4.91159	5.85409	6.79659	0.00183094	1.17286e-4	0.0266464	0.00309421
chr2	102889988	102890088	865755	0	+	0.4	(0.39,0.419]	chr2	97925	462	INTRON	INTRON	TMEM182	ENSG00000170417.16	ENST00000639249.1:ENST00000640575.2	protein_coding	protein_coding	protein_coding	protein_coding	0	102	2	5.21344	5.85367	6.4939	0.00893514	0.00628691	0.0620271	0.0523832
chr20	47355049	47355149	7570882	0	-	0.47	(0.45,0.485]	chr20	791103	2	SS5_PROX	SS5_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.8121	5.853265	5.89443	0.0158765	0.00141013	0.0859576	0.0180659
chr5	38930889	38930988	2408943	0	+	0.464646	(0.45,0.485]	chr5	240314	52	INTRON	INTRON	OSMR	ENSG00000145623.13	ENST00000274276.8	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.54186	5.85313	6.1644	0.0243502	6.92954e-4	0.106588	0.0109657
chr17	17716431	17716531	6689199	0	+	0.49	(0.485,0.523]	chr17	671338	315	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	1	193	2	4.91277	5.85257	6.79237	0.00241519	1.7739e-4	0.0309229	0.00415451
chr16	8639876	8639976	6381018	0	+	0.6	(0.58,1]	chr16	631102	2	SS5_PROX	SS5_PROX:INTRON	METTL22	ENSG00000067365.15	ENST00000163678.11:ENST00000381920.8:ENST00000561758.5:ENST00000568967.5:ENST00000572956.5:ENST00000561993.5:ENST00000563501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	97	2	5.20223	5.852265	6.5023	0.00411607	0.00194503	0.0374453	0.0275844
chr10	18570658	18570758	4642435	0	-	0.38	(0.36,0.39]	chr10	443321	183	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.80006	5.851755000000001	5.90345	0.0191255	0.00181603	0.0952349	0.0215865
chr21	43722206	43722306	7623815	0	+	0.54	(0.523,0.58]	chr21	796691	3	SS5_PROX	SS5_PROX:INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000476084.1:ENST00000470029.5:ENST00000438837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	89	2	5.73609	5.851414999999999	5.96674	0.0109075	0.0017613	0.0707085	0.0211077
chr7	105086153	105086252	3442826	0	+	0.383838	(0.36,0.39]	chr7	333224	40	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000476671.5:ENST00000667857.1:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	254	2	4.71657	5.8511500000000005	6.98573	0.00315404	1.01347e-4	0.0359193	0.00276585
chr7	2279004	2279104	3532966	0	-	0.61	(0.58,1]	chr7	341203	3	INTRON	INTRON	SNX8	ENSG00000106266.11	ENST00000222990.8:ENST00000435060.5:ENST00000457286.5:ENST00000435336.5:ENST00000494722.1:ENST00000447136.1:ENST00000419693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	179	2	4.7449	5.851145000000001	6.95739	7.23847e-4	1.74253e-4	0.0158739	0.00410754
chr5	38549218	38549317	2641201	0	-	0.383838	(0.36,0.39]	chr5	262351	182	INTRON	INTRON	LIFR	ENSG00000113594.10	ENST00000453190.7:ENST00000263409.8:ENST00000503088.1:ENST00000506990.5:ENST00000511561.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	100	2	5.26508	5.85106	6.43704	0.00795848	0.00676148	0.0578938	0.0544904
chr12	50643744	50643844	5230847	0	+	0.59	(0.58,1]	chr12	507719	25	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5:ENST00000546719.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	87	2	5.63543	5.85071	6.06599	0.00477081	0.00131165	0.0450109	0.0171898
chr17	38728595	38728695	6729369	0	+	0.57	(0.523,0.58]	chr17	676371	31	UTR3	UTR3:EXON_MRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5	protein_coding	protein_coding	protein_coding	protein_coding	3	311	2	4.34467	5.85069	7.35671	8.06717e-4	1.16558e-4	0.0168786	0.00308274
chr1	1029428	1029528	1009	0	+	0.65	(0.58,1]	chr1	166	66	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.45872	5.850585	6.24245	0.00334087	0.00211999	0.0368376	0.0239744
chr19	953491	953591	7185381	0	+	0.68	(0.58,1]	chr19	730741	204	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	90	2	5.45872	5.850585	6.24245	0.00334087	0.00211999	0.0368376	0.0239744
chr17	72554930	72555030	6963860	0	-	0.52	(0.485,0.523]	chr17	710389	205	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	2	268	2	4.81699	5.850334999999999	6.88368	0.00202693	5.76505e-5	0.0283135	0.0018203
chr9	81651983	81652083	4322572	0	-	0.49	(0.485,0.523]	chr9	413006	4	SS5_PROX	SS5_PROX:INTRON	TLE1	ENSG00000196781.16	ENST00000376499.8:ENST00000418319.5:ENST00000376463.3	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.55054	5.8503050000000005	6.15007	0.0215787	6.0909e-4	0.100612	0.0100377
chr2	45596952	45597051	1139362	0	-	0.50505	(0.485,0.523]	chr2	124672	108	INTRON	INTRON	SRBD1	ENSG00000068784.13	ENST00000263736.5	protein_coding	protein_coding	protein_coding	protein_coding	1	203	2	4.35375	5.850115	7.34648	9.01016e-4	8.15285e-4	0.016997	0.0132389
chr6	170400064	170400163	3076580	0	+	0.424242	(0.419,0.45]	chr6	299192	41	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	12	2977	2	5.29507	5.850045	6.40502	2.44977e-4	1.21247e-7	0.00884538	2.63428e-5
chr19	16380617	16380716	7343737	0	-	0.535354	(0.523,0.58]	chr19	760674	30	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	192	2	4.74483	5.849995	6.95516	0.00178078	2.83162e-4	0.0262315	0.00581439
chr18	58151759	58151859	7072530	0	+	0.6	(0.58,1]	chr18	721129	18	INTRON	INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5:ENST00000588516.5:ENST00000456986.5:ENST00000675502.1:ENST00000675554.1:ENST00000675137.1:ENST00000587547.1:ENST00000675227.1:ENST00000357895.9:ENST00000435432.6:ENST00000586263.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	85	2	5.66698	5.849845	6.03271	0.0102927	4.18183e-4	0.0684871	0.00770005
chr16	81667571	81667670	6509982	0	+	0.484848	(0.45,0.485]	chr16	645961	4	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.8269	5.849665	5.87243	0.0143887	0.00167585	0.0821732	0.0203806
chr2	26245242	26245341	731881	0	+	0.59596	(0.58,1]	chr2	85248	6	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	HADHB	ENSG00000138029.14	ENST00000448743.5:ENST00000537713.5:ENST00000479347.1:ENST00000405867.7:ENST00000317799.10:ENST00000425035.5:ENST00000412805.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	85	2	5.83375	5.84964	5.86553	0.00751249	6.8352e-4	0.0576451	0.0108717
chr14	70027343	70027443	5872656	0	+	0.66	(0.58,1]	chr14	573363	35	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.50497	5.849585	6.1942	0.00368616	0.00187297	0.0389784	0.0219434
chr20	34073635	34073718	7460409	0	+	0.542169	(0.523,0.58]	chr20	776611	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000246194.8:ENST00000333552.9:ENST00000442805.1:ENST00000493399.1:ENST00000488227.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	88	2	5.69157	5.84929	6.00701	0.0172851	8.61362e-4	0.0897247	0.0127848
chr9	129499257	129499354	4250769	0	+	0.587629	(0.58,1]	chr9	404726	4	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	213	2	4.26426	5.849080000000001	7.4339	0.00360545	4.24175e-6	0.0385302	2.81464e-4
chr12	132530578	132530678	5352921	0	+	0.49	(0.485,0.523]	chr12	523670	22	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.75784	5.849075	5.94031	0.0154142	0.00107389	0.0849828	0.0148869
chr19	14715192	14715286	7215077	0	+	0.489362	(0.485,0.523]	chr19	737064	5	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ZNF333	ENSG00000160961.12	ENST00000292530.11:ENST00000597007.5:ENST00000540689.6:ENST00000597301.5:ENST00000598161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	88	2	5.75784	5.849075	5.94031	0.0154142	0.00107389	0.0849828	0.0148869
chr6	42792067	42792167	2915556	0	+	0.49	(0.485,0.523]	chr6	286289	96	INTRON	INTRON	BICRAL	ENSG00000112624.13	ENST00000614467.4:ENST00000314073.10	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.75784	5.849075	5.94031	0.0154142	0.00107389	0.0849828	0.0148869
chr11	43452461	43452560	4844640	0	+	0.383838	(0.36,0.39]	chr11	463442	8	INTRON	INTRON	TTC17	ENSG00000052841.15	ENST00000039989.9:ENST00000525135.5:ENST00000525543.5:ENST00000533554.1:ENST00000418561.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	226	2	5.47303	5.848515	6.224	0.00967792	5.12245e-5	0.0661428	0.00167326
chr8	142667405	142667502	4095187	0	-	0.56701	(0.523,0.58]	chr8	389059	5	INTRON	INTRON	JRK	ENSG00000234616.9	ENST00000612905.2:ENST00000615982.4:ENST00000571961.7:ENST00000503272.1:ENST00000591357.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	233	2	4.48423	5.848145000000001	7.21206	0.00374297	2.49617e-5	0.0393941	9.86867e-4
chr9	124489483	124489583	4402617	0	-	0.6	(0.58,1]	chr9	419805	61	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	1	178	2	4.79756	5.84797	6.89838	8.25028e-4	1.46952e-4	0.0170688	0.00363207
chr9	15268547	15268647	4281928	0	-	0.43	(0.419,0.45]	chr9	409166	2	INTRON	INTRON	TTC39B	ENSG00000155158.20	ENST00000512701.7:ENST00000297615.10:ENST00000380850.9:ENST00000505732.5:ENST00000506891.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	99	2	5.1405	5.847875	6.55525	0.0550015	3.84925e-4	0.153337	0.00726694
chr18	48735056	48735155	7058625	0	+	0.494949	(0.485,0.523]	chr18	720341	230	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000587769.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	88	2	5.692	5.8477049999999995	6.00341	0.0171772	9.07333e-4	0.0895975	0.0132726
chr12	122092762	122092862	5343516	0	+	0.4	(0.39,0.419]	chr12	521864	131	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	94	2	5.49586	5.847675000000001	6.19949	0.0103045	0.00479873	0.0684871	0.0416285
chr3	13199126	13199226	1691133	0	-	0.56	(0.523,0.58]	chr3	176566	346	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.43411	5.84762	6.26113	0.026041	4.27166e-4	0.109673	0.00779962
chr18	12430292	12430381	7020145	0	+	0.494382	(0.485,0.523]	chr18	717085	5	INTRON	INTRON	PRELID3A	ENSG00000141391.14	ENST00000336990.8:ENST00000590956.5:ENST00000440960.6:ENST00000589565.1:ENST00000592149.5:ENST00000587735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	88	2	5.82081	5.84756	5.87431	0.0138807	0.00127835	0.0804838	0.0168904
chr5	34164796	34164895	2634043	0	-	0.40404	(0.39,0.419]	chr5	261346	2	EXON_LNCRNA	EXON_LNCRNA	GUSBP18	ENSG00000215158.9	ENST00000514048.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	91	2	5.69518	5.847405	5.99963	0.0142473	0.00302238	0.0817691	0.0305643
chr17	7112731	7112829	6847761	0	-	0.632653	(0.58,1]	chr17	693423	35	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	1207	2	5.54119	5.8473500000000005	6.15351	1.49607e-5	3.4439e-7	0.00223414	5.18663e-5
chr2	87528515	87528615	847935	0	+	0.44	(0.419,0.45]	chr2	95749	71	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000642451.1:ENST00000644478.1:ENST00000409139.6:ENST00000644125.1:ENST00000643743.1:ENST00000643276.1:ENST00000409898.2:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000646636.1:ENST00000629257.1:ENST00000409054.2	lncRNA	lncRNA	lncRNA	lncRNA	0	92	2	5.4831	5.847305	6.21151	0.0345118	9.41863e-4	0.126025	0.0135546
chr14	104890258	104890354	5926128	0	+	0.541667	(0.523,0.58]	chr14	579999	1	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.84373	5.8473	5.85087	0.0132767	0.00133116	0.0787251	0.0173248
chr9	6622186	6622284	4275232	0	-	0.571429	(0.523,0.58]	chr9	408394	15	INTRON	INTRON	GLDC	ENSG00000178445.10	ENST00000321612.8:ENST00000639364.1:ENST00000639954.1:ENST00000640592.1:ENST00000639840.1:ENST00000639020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	88	2	5.84373	5.8473	5.85087	0.0132767	0.00133116	0.0787251	0.0173248
chr10	79222172	79222272	4533583	0	+	0.4	(0.39,0.419]	chr10	432457	55	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	202	2	4.8039	5.847225	6.89055	0.00314209	0.00035398200000000003	0.0358106	0.00683568
chr15	60543007	60543106	6284949	0	-	0.585859	(0.58,1]	chr15	619503	108	INTRON	INTRON	RORA	ENSG00000069667.16	ENST00000335670.11:ENST00000261523.9:ENST00000309157.8:ENST00000449337.6:ENST00000551975.5:ENST00000560004.5:ENST00000559343.1:ENST00000558234.1:ENST00000557822.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	88	2	5.54978	5.847025	6.14427	0.00407804	0.00165911	0.0413652	0.0202545
chr5	32157763	32157863	2630492	0	-	0.47	(0.45,0.485]	chr5	261026	135	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	394	2	3.79303	5.8469999999999995	7.90097	0.00451761	3.97196e-6	0.0436138	2.69241e-4
chr1	53307479	53307579	486637	0	-	0.58	(0.523,0.58]	chr1	57941	110	INTRON	INTRON	LRP8	ENSG00000157193.18	ENST00000306052.12:ENST00000661457.1:ENST00000668448.1:ENST00000667377.1:ENST00000658277.1:ENST00000662198.1:ENST00000657895.1:ENST00000668071.1:ENST00000480045.6:ENST00000669432.1:ENST00000465675.6:ENST00000371454.6:ENST00000662604.1:ENST00000354412.7:ENST00000658404.1:ENST00000668991.1:ENST00000347547.7:ENST00000655704.1:ENST00000659993.1:ENST00000496580.1:ENST00000654634.1:ENST00000661359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	89	2	5.51247	5.8468800000000005	6.18129	0.0230387	5.34061e-4	0.102982	0.0091384
chr1	243480645	243480744	370441	0	+	0.565657	(0.523,0.58]	chr1	41881	44	INTRON	INTRON	SDCCAG8	ENSG00000054282.16	ENST00000366541.8:ENST00000435549.1	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.61976	5.8468800000000005	6.074	0.00906277	0.00236826	0.0637469	0.0259199
chr2	169838448	169838548	949454	0	+	0.57	(0.523,0.58]	chr2	104297	100	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11	protein_coding	protein_coding	protein_coding	protein_coding	1	192	2	4.69632	5.8464849999999995	6.99665	0.00164293	3.26856e-4	0.0250898	0.00645438
chr13	113005377	113005477	5655677	0	+	0.53	(0.523,0.58]	chr13	555138	30	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	89	2	5.69834	5.846325	5.99431	0.0104033	0.00194036	0.0686837	0.0225083
chr9	123405985	123406085	4396620	0	-	0.58	(0.523,0.58]	chr9	419589	21	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	89	2	5.69834	5.846325	5.99431	0.0104033	0.00194036	0.0686837	0.0225083
chr2	38325806	38325906	1123818	0	-	0.42	(0.419,0.45]	chr2	123019	64	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	276	2	4.4646	5.84628	7.22796	0.00204103	2.78686e-4	0.0283511	0.00577243
chrX	48464448	48464545	8040332	0	-	0.43299	(0.419,0.45]	chrX	838611	11	INTRON	INTRON	SLC38A5	ENSG00000017483.16	ENST00000595796.5:ENST00000619100.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5:ENST00000416711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	93	2	5.40477	5.845945	6.28712	0.0385125	7.76382e-4	0.131324	0.0118807
chr7	138549864	138549964	3502907	0	+	0.41	(0.39,0.419]	chr7	337534	107	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	90	2	5.63585	5.84577	6.05569	0.025023	0.0012512	0.10758	0.0166412
chr5	78592686	78592786	2702811	0	-	0.35	(0.33,0.36]	chr5	266653	26	INTRON	INTRON	LHFPL2	ENSG00000145685.14	ENST00000380345.7:ENST00000503686.5:ENST00000512759.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	90	2	5.53966	5.84551	6.15136	0.0251076	8.48155e-4	0.107672	0.0126615
chr4	140709200	140709300	2329719	0	-	0.51	(0.485,0.523]	chr4	234026	72	INTRON	INTRON	TBC1D9	ENSG00000109436.8	ENST00000442267.3	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.61619	5.84531	6.07443	0.00899749	0.00247695	0.0637469	0.0266492
chr16	85400531	85400631	6517076	0	+	0.45	(0.419,0.45]	chr16	646391	412	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	93	2	5.57051	5.845205	6.1199	0.0132894	0.00441471	0.0787251	0.0393688
chr8	133296397	133296497	4084291	0	-	0.69	(0.58,1]	chr8	388365	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000522738.1:ENST00000523892.5:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	1113	2	4.84837	5.84513	6.84189	1.2454e-4	2.67935e-6	0.00322977	0.00111692
chr21	17523957	17524057	7599978	0	+	0.55	(0.523,0.58]	chr21	794111	104	INTRON	INTRON	CXADR	ENSG00000154639.19	ENST00000284878.12:ENST00000400166.5:ENST00000400169.1:ENST00000400165.5:ENST00000356275.10	protein_coding	protein_coding	protein_coding	protein_coding	0	106	2	5.02927	5.844855000000001	6.66044	0.0095202	0.00312705	0.0650078	0.0356998
chr20	3349922	3350022	7516287	0	-	0.52	(0.485,0.523]	chr20	784726	9	INTRON	INTRON	DNAAF9	ENSG00000088854.13	ENST00000252032.10	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.69477	5.844755	5.99474	0.0103305	0.00203227	0.0684871	0.0232814
chr17	43542279	43542379	6909591	0	-	0.54	(0.523,0.58]	chr17	703271	54	INTRON	INTRON	ETV4	ENSG00000175832.13	ENST00000538265.5:ENST00000319349.10:ENST00000393664.6:ENST00000545954.5:ENST00000545089.5:ENST00000591713.5:ENST00000590236.5:ENST00000585508.5:ENST00000587151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	88	2	5.80873	5.844725	5.88072	0.0126258	0.00145893	0.0761905	0.0184991
chr9	127549559	127549659	4411999	0	-	0.57	(0.523,0.58]	chr9	420485	174	INTRON	INTRON	NIBAN2	ENSG00000136830.12	ENST00000373314.7:ENST00000373312.4:ENST00000478917.1:ENST00000468379.1:ENST00000484348.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	88	2	5.80873	5.844725	5.88072	0.0126258	0.00145893	0.0761905	0.0184991
chr17	77216653	77216743	6803142	0	+	0.411111	(0.39,0.419]	chr17	686686	2	UTR3	UTR3:EXON_MRNA	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	3	333	2	4.38637	5.84446	7.30255	0.00148592	1.63591e-4	0.0236759	0.003921
chr10	18563063	18563163	4642359	0	-	0.4	(0.39,0.419]	chr10	443321	107	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.31385	5.844425	6.375	0.00769302	0.0071966	0.0584869	0.0543014
chr15	67059039	67059139	6308082	0	-	0.41	(0.39,0.419]	chr15	621989	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000259347	ENSG00000259347.8	ENST00000692307.1:ENST00000558071.2:ENST00000636067.1	lncRNA	lncRNA	lncRNA	lncRNA	0	98	2	5.31385	5.844425	6.375	0.00769302	0.0071966	0.0584869	0.0543014
chr7	76998417	76998516	3398784	0	+	0.616162	(0.58,1]	chr7	328286	77	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	93	2	5.31036	5.84429	6.37822	0.00312721	0.00252415	0.031696	0.0311915
chr22	25486726	25486826	7701411	0	+	0.32	(0.29,0.33]	chr22	805972	252	INTRON	INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000686640.1:ENST00000509460.3:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	106	2	5.02042	5.844099999999999	6.66778	0.0103902	0.00269181	0.0682598	0.0329086
chr13	51414841	51414941	5715546	0	-	0.43	(0.419,0.45]	chr13	560749	117	INTRON	INTRON	INTS6	ENSG00000102786.15	ENST00000398119.6:ENST00000311234.9:ENST00000469430.5:ENST00000497989.5:ENST00000486195.6:ENST00000491189.5:ENST00000466784.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	206	2	4.56564	5.8437149999999995	7.12179	0.0024648	7.35568e-4	0.0313232	0.0114587
chr6	80008892	80008992	2943936	0	+	0.38	(0.36,0.39]	chr6	289730	4	SS5_PROX	SS5_PROX:INTRON	TTK	ENSG00000112742.10	ENST00000509894.5:ENST00000230510.7:ENST00000369798.7:ENST00000504040.1:ENST00000430061.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	90	2	5.76835	5.8433150000000005	5.91828	0.0158902	0.00252253	0.0859576	0.0270357
chr11	33140371	33140470	5022387	0	-	0.363636	(0.36,0.39]	chr11	485801	38	INTRON	INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6:ENST00000526480.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	326	2	4.18948	5.84313	7.49678	0.00100087	2.87488e-4	0.0190404	0.00589385
chr11	70782653	70782753	5062108	0	-	0.48	(0.45,0.485]	chr11	492701	648	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	92	2	5.51989	5.842700000000001	6.16551	0.00879664	0.00357389	0.0630845	0.0342681
chr3	47425177	47425274	1760790	0	-	0.391753	(0.39,0.419]	chr3	181567	3	SS5_PROX	SS5_PROX:INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000648151.1:ENST00000416208.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	90	2	5.60095	5.84268	6.08441	0.0263614	0.00116356	0.110638	0.0157899
chr13	112526146	112526244	5752174	0	-	0.5	(0.485,0.523]	chr13	563913	33	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000462580.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	91	2	5.35167	5.842420000000001	6.33317	0.0294163	3.65589e-4	0.116079	0.00700609
chr9	123257345	123257445	4396236	0	-	0.36	(0.33,0.36]	chr9	419553	200	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	89	2	5.64702	5.8423	6.03758	0.0212683	0.00113952	0.0996805	0.0155794
chr4	186283210	186283305	2173829	0	+	0.505263	(0.485,0.523]	chr4	220288	13	INTRON	INTRON	F11	ENSG00000088926.14	ENST00000403665.7:ENST00000264692.8	protein_coding	protein_coding	protein_coding	protein_coding	2	323	2	4.23021	5.842165	7.45412	0.00258189	1.24448e-5	0.0321738	5.98526e-4
chr7	47497518	47497618	3588787	0	-	0.42	(0.419,0.45]	chr7	346132	160	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.6954	5.841725	5.98805	0.0254103	0.00164584	0.108573	0.0202325
chr20	8388662	8388762	7429154	0	+	0.29	[0,0.29]	chr20	773698	166	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	253	2	4.09895	5.841415	7.58388	4.38245e-4	2.03158e-4	0.0080565500000000009	0.00797157
chr13	41729777	41729877	5697763	0	-	0.41	(0.39,0.419]	chr13	559147	1	SS3_PROX	SS3_PROX:INTRON	VWA8	ENSG00000102763.18	ENST00000379310.8:ENST00000281496.6	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.57892	5.84097	6.10302	0.0120635	0.00396694	0.0745226	0.0368027
chr16	20675222	20675322	6416209	0	+	0.54	(0.523,0.58]	chr16	634381	4	SS5_PROX	SS5_PROX:INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000614721.1:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	313	2	4.44707	5.84097	7.23487	0.00102861	8.4487e-5	0.0192522	0.0024172
chr21	43792571	43792671	7624283	0	+	0.54	(0.523,0.58]	chr21	796814	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RRP1	ENSG00000160214.13	ENST00000475534.5:ENST00000483896.5:ENST00000497547.2:ENST00000492638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	89	2	5.65959	5.8404799999999994	6.02137	0.00992924	0.0021416	0.0671959	0.0240825
chr15	62469929	62470029	6123523	0	+	0.49	(0.485,0.523]	chr15	602353	158	INTRON	INTRON	TLN2	ENSG00000171914.17	ENST00000561322.1:ENST00000636159.2:ENST00000561197.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	88	2	5.58723	5.84021	6.09319	0.0203514	7.11715e-4	0.0979211	0.0112082
chr4	914720	914812	2178769	0	-	0.663043	(0.58,1]	chr4	220690	7	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000512325.3:ENST00000510022.5:ENST00000511229.5:ENST00000511983.5:ENST00000628912.1:ENST00000513935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	85	2	5.75506	5.8401700000000005	5.92528	0.0062948	9.38062e-4	0.0523832	0.0135546
chr19	57433045	57433144	7297004	0	+	0.424242	(0.419,0.45]	chr19	751490	41	INTRON	INTRON	ENSG00000268533	ENSG00000268533.1	ENST00000597410.1	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.61031	5.840165000000001	6.07002	0.0143746	0.004032	0.0821732	0.0371291
chr8	73723132	73723231	3999105	0	-	0.424242	(0.419,0.45]	chr8	382519	136	INTRON	INTRON	STAU2:ENSG00000258677	ENSG00000040341.18:ENSG00000258677.2	ENST00000524300.6:ENST00000522695.5:ENST00000523558.5:ENST00000521210.5:ENST00000355780.9:ENST00000519961.5:ENST00000521727.5:ENST00000521451.5:ENST00000522509.5:ENST00000517542.5:ENST00000518981.5:ENST00000518767.5:ENST00000518502.5:ENST00000521293.5:ENST00000521447.5:ENST00000524104.5:ENST00000522962.5:ENST00000521419.5:ENST00000524191.5:ENST00000524113.5:ENST00000520945.5:ENST00000521736.5:ENST00000521845.5:ENST00000520872.5:ENST00000358757.5:ENST00000519818.5:ENST00000522061.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	92	2	5.61031	5.840165000000001	6.07002	0.0143746	0.004032	0.0821732	0.0371291
chr2	147881621	147881721	912847	0	+	0.35	(0.33,0.36]	chr2	102444	42	INTRON	INTRON	ACVR2A	ENSG00000121989.15	ENST00000535787.5:ENST00000487959.5:ENST00000462659.1:ENST00000404590.1:ENST00000241416.12:ENST00000465329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	203	2	4.4438	5.839785	7.23577	0.00130137	8.61808e-4	0.0220198	0.0127848
chr11	86047085	86047185	5104289	0	-	0.43	(0.419,0.45]	chr11	495816	151	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	94	2	5.48746	5.839549999999999	6.19164	0.0118587	0.00532156	0.0740271	0.0446153
chr16	29274912	29275011	6433586	0	+	0.535354	(0.523,0.58]	chr16	636745	228	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	103	2	5.08882	5.83936	6.5899	0.00834774	0.00356891	0.0598672	0.0383188
chr7	566361	566461	3523748	0	-	0.46	(0.45,0.485]	chr7	340370	145	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000400758.6	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.54186	5.83932	6.13678	0.0243502	7.46272e-4	0.106588	0.0115813
chr6	3145065	3145164	2828589	0	+	0.565657	(0.523,0.58]	chr6	277604	42	INTRON	INTRON	BPHL	ENSG00000137274.13	ENST00000434640.5:ENST00000430655.6:ENST00000424847.6:ENST00000433912.5:ENST00000380379.10:ENST00000490918.5:ENST00000380375.4:ENST00000488487.2:ENST00000423798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	90	2	5.5788	5.839205	6.09961	0.00866655	0.00262418	0.0623824	0.0278348
chr2	44429305	44429404	781148	0	+	0.282828	[0,0.29]	chr2	89654	283	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000403853.7:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	90	2	5.30082	5.839085	6.37735	0.0212677	2.4707e-4	0.0996805	0.00526245
chr14	70025445	70025545	5872637	0	+	0.49	(0.485,0.523]	chr14	573363	16	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.65601	5.8389050000000005	6.0218	0.00985907	0.00224147	0.0670775	0.024843
chr16	29270113	29270213	6433538	0	+	0.54	(0.523,0.58]	chr16	636745	180	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	1	221	2	4.01555	5.83873	7.66191	0.00221587	4.34904e-4	0.0247044	0.0119405
chr18	13713627	13713725	7125316	0	-	0.418367	(0.39,0.419]	chr18	725110	33	INTRON	INTRON	FAM210A	ENSG00000177150.13	ENST00000322247.7:ENST00000651643.1:ENST00000402563.5:ENST00000585785.1:ENST00000588475.1:ENST00000592976.5:ENST00000591269.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	90	2	5.73194	5.838480000000001	5.94502	0.0155393	0.00276973	0.0849828	0.0286873
chr7	141602176	141602275	3509152	0	+	0.494949	(0.485,0.523]	chr7	338237	5	INTRON	INTRON	AGK	ENSG00000006530.18	ENST00000629555.2:ENST00000473247.5:ENST00000649365.1:ENST00000649014.1:ENST00000650365.1:ENST00000648489.1:ENST00000649286.2:ENST00000648690.1:ENST00000649790.1:ENST00000473884.5:ENST00000649914.1:ENST00000647568.1:ENST00000648395.1:ENST00000648068.1:ENST00000650547.1:ENST00000650006.1:ENST00000649538.1:ENST00000494688.1:ENST00000465241.5:ENST00000647898.1:ENST00000496273.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	90	2	5.39369	5.83844	6.28319	0.0275819	4.20832e-4	0.112782	0.00773187
chr10	72062464	72062562	4707403	0	-	0.55102	(0.523,0.58]	chr10	448659	36	UTR3	UTR3:EXON_MRNA	SPOCK2	ENSG00000107742.14	ENST00000373109.7:ENST00000317376.8	protein_coding	protein_coding	protein_coding	protein_coding	1	265	2	3.58132	5.8384	8.09548	0.0193579	1.43168e-6	0.0954964	1.32769e-4
chr19	16380420	16380519	7343735	0	-	0.50505	(0.485,0.523]	chr19	760674	28	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	256	2	4.30863	5.838175	7.36772	7.81266e-4	2.75849e-4	0.016579	0.00573008
chrX	65515760	65515856	8055031	0	-	0.46875	(0.45,0.485]	chrX	840752	4	INTRON	INTRON	LAS1L	ENSG00000001497.18	ENST00000677056.1:ENST00000677969.1:ENST00000374811.8:ENST00000374807.9:ENST00000677834.1:ENST00000484069.1:ENST00000374804.9:ENST00000677986.1:ENST00000677087.1:ENST00000679056.1:ENST00000679261.1:ENST00000678074.1:ENST00000678705.1:ENST00000679277.1:ENST00000677154.1:ENST00000678547.1:ENST00000678956.1:ENST00000679116.1:ENST00000678848.1:ENST00000678173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	88	2	5.74913	5.83809	5.92705	0.017574	0.00129636	0.0906595	0.0170746
chr20	62336906	62336986	7584278	0	-	0.625	(0.58,1]	chr20	792662	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_PROX:INTRON	LAMA5	ENSG00000130702.15	ENST00000252999.7:ENST00000474128.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	86	2	5.43752	5.8379200000000004	6.23832	0.0156166	2.24165e-4	0.0849828	0.00490779
chr5	145705894	145705994	2782513	0	-	0.48	(0.45,0.485]	chr5	272835	12	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510259.5:ENST00000510594.1:ENST00000515161.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	102	2	5.12938	5.837165000000001	6.54495	0.00873194	0.00450754	0.0612699	0.0436138
chr11	107530618	107530716	5117391	0	-	0.428571	(0.419,0.45]	chr11	496922	47	INTRON	INTRON	ALKBH8	ENSG00000137760.15	ENST00000428149.7:ENST00000429370.5:ENST00000389568.7:ENST00000260318.6:ENST00000417449.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	93	2	5.52959	5.8369	6.14421	0.0127879	0.00484244	0.0769397	0.0418176
chr11	63901697	63901797	4867446	0	+	0.47	(0.45,0.485]	chr11	466826	1	SS3_PROX	SS3_PROX:INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000677688.1:ENST00000509502.6:ENST00000408948.7:ENST00000676602.1:ENST00000678482.1:ENST00000678662.1:ENST00000679321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	88	2	5.6833	5.8367249999999995	5.99015	0.0195193	0.00110015	0.0955413	0.015136
chr14	76246373	76246473	5891335	0	+	0.48	(0.45,0.485]	chr14	575313	116	INTRON	INTRON	GPATCH2L	ENSG00000089916.18	ENST00000556372.2	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	88	2	5.6833	5.8367249999999995	5.99015	0.0195193	0.00110015	0.0955413	0.015136
chr2	178507979	178508079	964951	0	+	0.42	(0.419,0.45]	chr2	105872	42	UTR3	UTR3:EXON_MRNA	PLEKHA3	ENSG00000116095.11	ENST00000234453.10	protein_coding	protein_coding	protein_coding	protein_coding	1	252	2	4.5519	5.836645	7.12139	0.00481343	8.12764e-5	0.0453395	0.00234456
chr16	11007801	11007901	6385941	0	+	0.53	(0.523,0.58]	chr16	631680	41	INTRON	INTRON	CLEC16A	ENSG00000038532.16	ENST00000409790.6:ENST00000409552.4:ENST00000494853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	190	2	4.76064	5.836545	6.91245	0.00193417	2.70171e-4	0.0275437	0.00563203
chr2	239347381	239347481	1392184	0	-	0.39	(0.36,0.39]	chr2	148752	229	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	734	2	5.72176	5.83652	5.95128	4.65774e-4	2.85078e-6	0.0124594	2.12224e-4
chr17	749441	749532	6824482	0	-	0.516484	(0.485,0.523]	chr17	689920	2	SS5_PROX	SS5_PROX:INTRON	GEMIN4	ENSG00000179409.11	ENST00000319004.6:ENST00000437269.1:ENST00000573482.5:ENST00000570364.5:ENST00000576383.1:ENST00000574958.1	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.55054	5.836225	6.12191	0.0215787	6.58016e-4	0.100612	0.0106077
chr7	148812981	148813077	3730836	0	-	0.385417	(0.36,0.39]	chr7	358399	9	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000684400.1:ENST00000683744.1:ENST00000684510.1:ENST00000682317.1:ENST00000683293.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000684436.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	89	2	5.76893	5.83619	5.90345	0.0200694	0.00181603	0.0971995	0.0215865
chr1	114407300	114407400	565586	0	-	0.41	(0.39,0.419]	chr1	64924	2	SS3_PROX	SS3_PROX:INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000369543.6:ENST00000448034.5	protein_coding	protein_coding	protein_coding	protein_coding	0	91	2	5.45224	5.83611	6.21998	0.032783	8.22163e-4	0.122593	0.0124043
chr2	108637137	108637237	871987	0	+	0.34	(0.33,0.36]	chr2	98320	153	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1:ENST00000695519.1:ENST00000332345.10:ENST00000695520.1:ENST00000393310.5:ENST00000695521.1:ENST00000410093.5:ENST00000449684.6:ENST00000409441.5:ENST00000422797.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	89	2	5.57634	5.835965	6.09559	0.0237329	9.809e-4	0.10525	0.0140347
chr21	42843187	42843281	7675403	0	-	0.553191	(0.523,0.58]	chr21	802284	2	UTR3	UTR3:EXON_MRNA	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	0	93	2	5.21727	5.835965	6.45466	0.0361597	2.45921e-4	0.127853	0.00524396
chr3	48050996	48051096	1765575	0	-	0.36	(0.33,0.36]	chr3	182011	347	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.57634	5.835965	6.09559	0.0237329	9.809e-4	0.10525	0.0140347
chr3	13199426	13199526	1691136	0	-	0.62	(0.58,1]	chr3	176566	349	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	85	2	5.51813	5.835945000000001	6.15376	0.013519	2.90409e-4	0.0792526	0.0059241
chr14	19096503	19096602	5754305	0	+	0.515152	(0.485,0.523]	chr14	564239	27	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000619938.1:ENST00000644980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	520	2	5.79787	5.835945	5.87402	2.21765e-4	1.11079e-5	0.00842349	5.54555e-4
chrX	1396648	1396748	7830127	0	+	0.53	(0.523,0.58]	chrX	822050	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LINC00106	ENSG00000236871.7	ENST00000434938.7	lncRNA	lncRNA	lncRNA	lncRNA	1	190	2	4.89568	5.83591	6.77614	0.00251197	1.80282e-4	0.031696	0.00419938
chr6	47916634	47916734	3145114	0	-	0.44	(0.419,0.45]	chr6	306778	143	INTRON	INTRON	PTCHD4	ENSG00000244694.8	ENST00000339488.9:ENST00000398738.3:ENST00000679966.1	protein_coding	protein_coding	protein_coding	protein_coding	1	203	2	4.77476	5.8359	6.89704	0.0036542	4.18007e-4	0.0389784	0.00770005
chr12	23863692	23863792	5387659	0	-	0.27	[0,0.29]	chr12	528181	171	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000537393.5:ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2:ENST00000538083.1:ENST00000536729.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	107	2	4.75627	5.83589	6.91551	0.050276	4.79927e-5	0.148161	0.00159892
chr6	668446	668545	3078851	0	-	0.494949	(0.485,0.523]	chr6	299429	108	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9:ENST00000443083.5	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.73251	5.8357849999999996	5.93906	0.0113657	0.00184599	0.0723462	0.0217471
chr1	12582657	12582757	402429	0	-	0.52	(0.485,0.523]	chr1	46222	16	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	837	2	5.00789	5.83573	6.66357	3.37347e-4	6.33235e-7	0.0105112	7.78545e-5
chr14	94307202	94307298	6046244	0	-	0.416667	(0.39,0.419]	chr14	593049	6	INTRON	INTRON	SERPINA6	ENSG00000170099.6	ENST00000341584.4:ENST00000555056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	91	2	5.61872	5.835485	6.05225	0.0130948	0.00361685	0.0782739	0.0342681
chr3	48073182	48073282	1765797	0	-	0.38	(0.36,0.39]	chr3	182011	569	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.80006	5.83545	5.87084	0.0191255	0.00196738	0.0952349	0.022768300000000002
chr2	62997365	62997465	816900	0	+	0.42	(0.419,0.45]	chr2	92205	2	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000496857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	766	2	5.48479	5.83514	6.18549	2.33094e-4	1.40948e-5	0.00863036	6.53552e-4
chr16	89433723	89433822	6661171	0	-	0.646465	(0.58,1]	chr16	666753	20	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	84	2	5.70191	5.835025	5.96814	0.00964351	5.06433e-4	0.0659937	0.00881473
chr6	129524464	129524564	3258038	0	-	0.39	(0.36,0.39]	chr6	315281	4	SS3_PROX	SS3_PROX:INTRON	ENSG00000226149	ENSG00000226149.6	ENST00000665046.1:ENST00000664071.1:ENST00000657779.1:ENST00000659721.1:ENST00000668058.1:ENST00000670413.1	lncRNA	lncRNA	lncRNA	lncRNA	1	203	2	5.01277	5.83491	6.65705	0.00462176	1.95289e-4	0.0442699	0.0044508
chr13	113215957	113216057	5657367	0	+	0.59	(0.58,1]	chr13	555523	55	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000488558.2:ENST00000375440.9:ENST00000474116.5:ENST00000494985.5:ENST00000463426.5:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	177	2	4.72691	5.834885	6.94286	7.47593e-4	1.84649e-4	0.0161372	0.0042795
chr2	238439285	238439384	1074076	0	+	0.545455	(0.523,0.58]	chr2	116441	29	INTRON	INTRON	ASB1	ENSG00000065802.12	ENST00000463352.5:ENST00000264607.9:ENST00000409297.1:ENST00000438264.5:ENST00000491653.1:ENST00000468122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	87	2	5.72487	5.8343799999999995	5.94389	0.0163679	0.0010207	0.0875379	0.0143498
chr18	76424160	76424260	7179361	0	-	0.53	(0.523,0.58]	chr18	730080	435	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.75742	5.834345	5.91127	0.0155135	0.00111349	0.0849828	0.0152496
chr10	102648912	102649011	4576513	0	+	0.616162	(0.58,1]	chr10	437280	27	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	176	2	4.83163	5.834239999999999	6.83685	9.44859e-4	1.31533e-4	0.0183873	0.00335491
chr3	197145060	197145159	1989918	0	-	0.424242	(0.419,0.45]	chr3	202658	19	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000447466.1:ENST00000661808.1:ENST00000453607.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	90	2	5.75936	5.834225	5.90909	0.0184411	0.00285253	0.0927235	0.0294017
chr6	47904934	47905034	3144997	0	-	0.35	(0.33,0.36]	chr6	306778	26	INTRON	INTRON	PTCHD4	ENSG00000244694.8	ENST00000339488.9:ENST00000398738.3:ENST00000679966.1	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.46338	5.83422	6.20506	0.0281891	7.36479e-4	0.114124	0.0114654
chr7	96209277	96209377	3642386	0	-	0.36	(0.33,0.36]	chr7	350726	3	SS3_PROX	SS3_PROX:INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000472162.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	90	2	5.46338	5.83422	6.20506	0.0281891	7.36479e-4	0.114124	0.0114654
chr7	76998516	76998616	3398785	0	+	0.6	(0.58,1]	chr7	328286	78	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	87	2	5.54978	5.834215	6.11865	0.00429384	0.00165911	0.042386	0.0202545
chr9	133735096	133735194	4427934	0	-	0.683673	(0.58,1]	chr9	423136	5	INTRON	INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000427237.6:ENST00000298628.6	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.54978	5.834215	6.11865	0.00429384	0.00165911	0.042386	0.0202545
chr5	21370934	21371034	2391271	0	+	0.39	(0.36,0.39]	chr5	239002	286	INTRON	INTRON	GUSBP1	ENSG00000183666.18	ENST00000508260.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	89	2	5.83054	5.83401	5.83748	0.0182399	0.00213426	0.0921579	0.0240825
chr6	10589913	10590013	2850446	0	+	0.38	(0.36,0.39]	chr6	278695	26	INTRON	INTRON	GCNT2	ENSG00000111846.20	ENST00000410107.5:ENST00000489225.5:ENST00000397423.7:ENST00000495262.7:ENST00000475577.5:ENST00000489819.5:ENST00000474518.1:ENST00000379597.7:ENST00000485764.1:ENST00000461400.1:ENST00000316170.9:ENST00000459872.1:ENST00000265012.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	89	2	5.83054	5.83401	5.83748	0.0182399	0.00213426	0.0921579	0.0240825
chr10	98421968	98422068	4744443	0	-	0.47	(0.45,0.485]	chr10	453146	2	SS5_PROX	SS5_PROX:INTRON	HPS1	ENSG00000107521.20	ENST00000361490.9:ENST00000325103.10:ENST00000467246.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	89	2	5.68155	5.83378	5.98601	0.0119228	0.00241241	0.0741726	0.0261086
chr14	89334058	89334158	6027443	0	-	0.42	(0.419,0.45]	chr14	591456	4	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	91	2	5.64904	5.833690000000001	6.01834	0.015582500000000001	0.00368884	0.0849828	0.0348088
chr9	83537184	83537284	4325923	0	-	0.57	(0.523,0.58]	chr9	413150	696	INTRON	INTRON	FRMD3	ENSG00000172159.16	ENST00000376438.5:ENST00000304195.8	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.78924	5.83357	5.8779	0.0147166	0.00121652	0.0826843	0.0162693
chr7	158915211	158915309	3523141	0	+	0.408163	(0.39,0.419]	chr7	340293	5	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	205	2	4.44232	5.833385	7.22445	0.00171592	9.49224e-4	0.025659	0.0136465
chr14	23303402	23303501	5756396	0	+	0.50505	(0.485,0.523]	chr14	564853	6	INTRON	INTRON	BCL2L2	ENSG00000129473.11	ENST00000553824.5:ENST00000679219.1	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.44489	5.833295	6.2217	0.00693912	0.00377098	0.0553898	0.0353672
chr5	59656378	59656478	2670702	0	-	0.41	(0.39,0.419]	chr5	264360	700	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000507116.5:ENST00000502484.6:ENST00000309641.10:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	89	2	5.66992	5.83321	5.9965	0.0237738	0.00145172	0.105296	0.0184691
chr17	82717669	82717760	6818054	0	+	0.538462	(0.523,0.58]	chr17	689119	4	INTRON	INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	94	2	5.35452	5.833114999999999	6.31171	0.00594629	0.00453096	0.0506158	0.0400651
chr6	158544042	158544142	3063733	0	+	0.55	(0.523,0.58]	chr6	297682	68	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.51247	5.83307	6.15367	0.0230387	5.76607e-4	0.102982	0.00963379
chr20	62852915	62853015	7584990	0	-	0.51	(0.485,0.523]	chr20	792812	64	INTRON	INTRON	TCFL5	ENSG00000101190.13	ENST00000335351.8:ENST00000217162.5	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.75784	5.832765	5.90769	0.0154142	0.0011708	0.0849828	0.0157899
chr21	45451625	45451724	7630779	0	+	0.575758	(0.523,0.58]	chr21	797656	458	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.69834	5.83254	5.96674	0.0109075	0.00194036	0.0707085	0.0225083
chr10	100229227	100229327	4747974	0	-	0.49	(0.485,0.523]	chr10	453688	4	SS5_PROX	SS5_PROX:INTRON	CHUK	ENSG00000213341.11	ENST00000370397.8	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.692	5.832105	5.97221	0.0171772	9.86421e-4	0.0895975	0.0140716
chr16	85453409	85453509	6517605	0	+	0.62	(0.58,1]	chr16	646391	941	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	104	2	4.95814	5.8317250000000005	6.70531	0.0074469	0.00125905	0.0553519	0.0215793
chr20	3192416	3192512	7515118	0	-	0.6875	(0.58,1]	chr20	784523	2	INTRON	INTRON	DDRGK1	ENSG00000198171.13	ENST00000354488.8:ENST00000470203.1:ENST00000380201.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	84	2	5.82964	5.831695	5.83375	0.00751249	7.58111e-4	0.0576451	0.0117078
chr3	13025394	13025494	1689390	0	-	0.6	(0.58,1]	chr3	176542	29	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.82964	5.831695	5.83375	0.00751249	7.58111e-4	0.0576451	0.0117078
chr6	169659918	169660018	3304470	0	-	0.62	(0.58,1]	chr6	319895	4	SS3_PROX	SS3_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2:ENST00000467418.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	84	2	5.82964	5.831695	5.83375	0.00751249	7.58111e-4	0.0576451	0.0117078
chr7	129683235	129683334	3478820	0	+	0.363636	(0.36,0.39]	chr7	336224	51	INTRON	INTRON	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000454688.5:ENST00000223190.8:ENST00000311967.6:ENST00000393230.6:ENST00000353868.5	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.26508	5.83098	6.39688	0.00795848	0.00723998	0.0578938	0.0565323
chr8	22063839	22063937	3769010	0	+	0.428571	(0.419,0.45]	chr8	362410	40	INTRON	INTRON	DMTN	ENSG00000158856.19	ENST00000522148.5:ENST00000523300.5:ENST00000519959.1:ENST00000381470.7:ENST00000519850.5:ENST00000432128.6:ENST00000443491.6:ENST00000517305.5:ENST00000518816.5:ENST00000517600.5:ENST00000523782.6:ENST00000520856.1:ENST00000523623.5:ENST00000358242.6:ENST00000520174.5:ENST00000517804.5:ENST00000265800.9:ENST00000517418.5:ENST00000523266.5:ENST00000519907.5:ENST00000415253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	109	2	4.98054	5.83098	6.68142	0.0154548	0.00529005	0.0869771	0.047841
chr5	139653363	139653463	2549694	0	+	0.55	(0.523,0.58]	chr5	253168	18	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	1	191	2	4.61165	5.830915	7.05018	0.00148008	4.1901e-4	0.023604	0.00771359
chrX	65515664	65515760	8055030	0	-	0.5	(0.485,0.523]	chrX	840752	3	INTRON	INTRON	LAS1L	ENSG00000001497.18	ENST00000677056.1:ENST00000677969.1:ENST00000374811.8:ENST00000374807.9:ENST00000677834.1:ENST00000484069.1:ENST00000374804.9:ENST00000677986.1:ENST00000677087.1:ENST00000679056.1:ENST00000679261.1:ENST00000678074.1:ENST00000678705.1:ENST00000679277.1:ENST00000677154.1:ENST00000678547.1:ENST00000678956.1:ENST00000679116.1:ENST00000678848.1:ENST00000678173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	87	2	5.82081	5.830475	5.84014	0.0138807	0.00139792	0.0804838	0.0179863
chr8	42005943	42006043	3969244	0	-	0.45	(0.419,0.45]	chr8	379478	180	INTRON	INTRON	KAT6A	ENSG00000083168.11	ENST00000406337.6:ENST00000265713.8:ENST00000396930.4:ENST00000648335.1:ENST00000649827.1:ENST00000485568.5:ENST00000647809.1:ENST00000648030.1:ENST00000650356.1:ENST00000470574.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	90	2	5.72351	5.83035	5.93719	0.0176643	0.00310292	0.0909046	0.0311614
chr2	231808866	231808963	1051056	0	+	0.350515	(0.33,0.36]	chr2	114511	4	UTR3	UTR3:EXON_MRNA	COPS7B	ENSG00000144524.18	ENST00000611614.4:ENST00000620578.4:ENST00000413197.5:ENST00000350033.8:ENST00000373608.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	88	2	5.71439	5.830159999999999	5.94593	0.0191308	0.00143977	0.0952349	0.0183435
chr8	143321786	143321886	4095545	0	-	0.65	(0.58,1]	chr8	389124	4	SS3_PROX	SS3_PROX:INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	181	2	5.2395	5.83014	6.42078	0.00230938	3.37223e-5	0.0302623	0.0012296
chr10	79292556	79292656	4534293	0	+	0.51	(0.485,0.523]	chr10	432485	2	SS5_PROX	SS5_PROX:INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10:ENST00000478357.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	235	2	4.66793	5.830030000000001	6.99213	0.00260673	5.25088e-5	0.0323611	0.00170211
chr7	100580475	100580574	3654721	0	-	0.414141	(0.39,0.419]	chr7	352212	18	EXON_MRNA	EXON_MRNA:INTRON	LRCH4	ENSG00000077454.17	ENST00000310300.11:ENST00000467201.5:ENST00000497245.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	98	2	5.26451	5.83001	6.39551	0.00800901	0.00743138	0.0580954	0.057548
chr10	133349786	133349886	4783432	0	-	0.64	(0.58,1]	chr10	457516	36	INTRON	INTRON	ENSG00000226699	ENSG00000226699.1	ENST00000452591.1	lncRNA	lncRNA	lncRNA	lncRNA	0	85	2	5.67642	5.82982	5.98322	0.00562007	0.00117039	0.0493906	0.0157899
chr1	43596457	43596556	107415	0	+	0.555556	(0.523,0.58]	chr1	13240	35	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.80873	5.8298	5.85087	0.0132767	0.00145893	0.0787251	0.0184991
chr15	40108258	40108347	6235242	0	-	0.696629	(0.58,1]	chr15	613050	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	BMF	ENSG00000104081.14	ENST00000354670.9:ENST00000558774.5:ENST00000559701.5:ENST00000557870.1:ENST00000560430.1:ENST00000558057.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	237	2	5.17052	5.8297550000000005	6.48899	4.82069e-4	1.02074e-4	0.0127255	0.00277572
chr14	74858736	74858836	5885601	0	+	0.4	(0.39,0.419]	chr14	574704	35	UTR3	UTR3:EXON_MRNA	YLPM1	ENSG00000119596.18	ENST00000554107.2	protein_coding	protein_coding	protein_coding	protein_coding	2	332	2	3.77477	5.829725	7.88468	0.00799602	7.26057e-6	0.0597159	4.10219e-4
chr1	36249604	36249703	92034	0	+	0.434343	(0.419,0.45]	chr1	10759	238	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	2	347	2	4.17419	5.82945	7.48471	0.00433762	2.86803e-5	0.0427656	0.00108927
chr2	237578815	237578909	1388033	0	-	0.574468	(0.523,0.58]	chr2	148326	8	EXON_MRNA	EXON_MRNA:INTRON	RAB17	ENSG00000124839.13	ENST00000392001.6:ENST00000264601.8:ENST00000477149.5:ENST00000409576.1:ENST00000414278.1:ENST00000409822.1:ENST00000411462.5:ENST00000430445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	1219	2	5.63064	5.829065	6.02749	6.82305e-5	4.96635e-6	0.00461153	3.14509e-4
chr8	30620193	30620292	3962610	0	-	0.383838	(0.36,0.39]	chr8	378554	51	INTRON	INTRON	GTF2E2	ENSG00000197265.9	ENST00000355904.9:ENST00000523499.5:ENST00000518599.5:ENST00000518445.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	89	2	5.76835	5.828984999999999	5.88962	0.0166261	0.00252253	0.0884836	0.0270357
chr13	29520441	29520539	5677211	0	-	0.377551	(0.36,0.39]	chr13	557615	5	INTRON	INTRON	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	0	94	2	5.24317	5.82859	6.41401	0.0433841	4.90006e-4	0.138813	0.00861813
chr17	315337	315436	6821429	0	-	0.585859	(0.58,1]	chr17	689582	88	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	183	2	4.44822	5.82851	7.2088	4.4502e-4	4.11273e-4	0.0116246	0.00806076
chr17	80912956	80913055	6812612	0	+	0.494949	(0.485,0.523]	chr17	687941	32	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	87	2	5.623	5.828480000000001	6.03396	0.0192139	8.35707e-4	0.095424900000000007	0.012554
chr1	6033294	6033392	6769	0	+	0.489796	(0.485,0.523]	chr1	1420	55	INTRON	INTRON	KCNAB2	ENSG00000069424.16	ENST00000655548.1:ENST00000378111.6:ENST00000378097.6:ENST00000666163.1:ENST00000671676.1:ENST00000658883.1:ENST00000658691.1:ENST00000435937.6:ENST00000445501.6:ENST00000478098.5:ENST00000653262.1:ENST00000668706.1:ENST00000389632.9:ENST00000654144.1:ENST00000341524.6:ENST00000462676.3:ENST00000428161.6:ENST00000352527.6:ENST00000663169.1:ENST00000653635.1:ENST00000661248.1:ENST00000656198.1:ENST00000602612.5:ENST00000481789.2:ENST00000656746.1:ENST00000665338.1:ENST00000666299.1:ENST00000652845.1:ENST00000655703.1:ENST00000669250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	87	2	5.80515	5.828225	5.8513	0.0131886	0.00153111	0.0785398	0.0191213
chr1	160997781	160997880	606139	0	-	0.474747	(0.45,0.485]	chr1	72014	27	UTR3	UTR3:EXON_MRNA	F11R	ENSG00000158769.18	ENST00000621309.4:ENST00000368026.11	protein_coding	protein_coding	protein_coding	protein_coding	2	514	2	5.5454	5.828115	6.11083	5.20474e-4	4.98157e-6	0.0132625	3.14998e-4
chr20	64022157	64022256	7510623	0	+	0.424242	(0.419,0.45]	chr20	783726	50	INTRON	INTRON	PRPF6	ENSG00000101161.8	ENST00000266079.5	protein_coding	protein_coding	protein_coding	protein_coding	0	91	2	5.44447	5.82799	6.21151	0.0364384	9.41863e-4	0.128173	0.0135546
chr10	74267710	74267809	4512851	0	+	0.434343	(0.419,0.45]	chr10	431931	243	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	252	2	3.99023	5.827915	7.6656	0.0125707	1.6898e-5	0.0761905	7.44477e-4
chr9	15254785	15254884	4281789	0	-	0.383838	(0.36,0.39]	chr9	409160	44	INTRON	INTRON	TTC39B	ENSG00000155158.20	ENST00000512701.7:ENST00000297615.10:ENST00000380850.9:ENST00000505732.5:ENST00000506891.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	95	2	5.19713	5.827855	6.45858	0.0462258	4.35017e-4	0.143138	0.007918
chr16	84735085	84735183	6514180	0	+	0.571429	(0.523,0.58]	chr16	646283	12	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	193	2	4.50303	5.82732	7.15161	0.0012128	5.73963e-4	0.0210863	0.00962697
chr19	1415242	1415342	7187499	0	+	0.53	(0.523,0.58]	chr19	731286	48	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	192	2	4.54015	5.827275	7.1144	0.00130498	5.15707e-4	0.0220198	0.00894095
chr9	133853591	133853691	4428934	0	-	0.63	(0.58,1]	chr9	423304	189	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	1	182	2	4.47001	5.82716	7.18431	4.34792e-4	4.15967e-4	0.0119405	0.00768537
chr1	24804527	24804627	64021	0	+	0.56	(0.523,0.58]	chr1	6866	63	INTRON	INTRON	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000497755.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	87	2	5.5868	5.827135	6.06747	0.020474	7.30845e-4	0.0979776	0.0113963
chr17	80274300	80274399	6807307	0	+	0.545455	(0.523,0.58]	chr17	687364	5	INTRON	INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000319921.4	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.5868	5.827135	6.06747	0.020474	7.30845e-4	0.0979776	0.0113963
chr19	45624418	45624518	7388940	0	-	0.45	(0.419,0.45]	chr19	767279	3	SS5_PROX	SS5_PROX:INTRON	EML2	ENSG00000125746.18	ENST00000589876.5:ENST00000587152.6:ENST00000245925.8:ENST00000586195.5:ENST00000588308.5:ENST00000536630.5:ENST00000590819.5:ENST00000399594.7:ENST00000590575.5:ENST00000588272.1:ENST00000588000.5:ENST00000588610.5:ENST00000588496.5:ENST00000586902.5:ENST00000590580.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	89	2	5.75975	5.827095	5.89444	0.0231013	0.00206691	0.102982	0.0235758
chr2	26092063	26092163	731400	0	+	0.54	(0.523,0.58]	chr2	85215	494	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	189	2	4.90993	5.826975	6.74402	0.00267018	1.72685e-4	0.0327654	0.00408359
chr9	123405686	123405786	4396617	0	-	0.56	(0.523,0.58]	chr9	419589	18	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	88	2	5.65959	5.82695	5.99431	0.0104033	0.0021416	0.0686837	0.0240825
chr17	77500111	77500208	6805399	0	+	0.608247	(0.58,1]	chr17	686872	16	UTR3	UTR3:EXON_MRNA	SEPTIN9	ENSG00000184640.20	ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000423034.6:ENST00000427674.6:ENST00000541152.6:ENST00000427180.5	protein_coding	protein_coding	protein_coding	protein_coding	12	2158	2	5.37553	5.82678	6.27803	2.29757e-5	3.17385e-8	0.00276344	1.11281e-5
chr3	13203525	13203625	1691177	0	-	0.64	(0.58,1]	chr3	176566	390	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.41094	5.826695	6.24245	0.00334087	0.00240622	0.0368376	0.0261006
chr7	158920140	158920236	3523192	0	+	0.59375	(0.58,1]	chr7	340299	9	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	89	2	5.41094	5.826695	6.24245	0.00334087	0.00240622	0.0368376	0.0261006
chr7	30295182	30295282	3339006	0	+	0.46	(0.45,0.485]	chr7	323133	49	INTRON	INTRON	ZNRF2	ENSG00000180233.11	ENST00000323037.5	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.56203	5.826665	6.0913	0.00998516	0.00322991	0.0673647	0.0319521
chr10	76415545	76415645	4530335	0	+	0.42	(0.419,0.45]	chr10	432342	118	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593699.5:ENST00000372499.5:ENST00000496424.2:ENST00000598708.1:ENST00000488655.5:ENST00000468134.1:ENST00000597823.1:ENST00000596228.5:ENST00000483375.1:ENST00000488759.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	89	2	5.6954	5.826455	5.95751	0.0254103	0.0017735	0.108573	0.02121
chr9	35309199	35309295	4143420	0	+	0.4375	(0.419,0.45]	chr9	394000	4	INTRON	INTRON	UNC13B	ENSG00000198722.15	ENST00000617908.4:ENST00000619578.4:ENST00000396787.5:ENST00000635942.2:ENST00000378495.7:ENST00000634487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	89	2	5.6954	5.826455	5.95751	0.0254103	0.0017735	0.108573	0.02121
chr19	58325953	58326045	7412924	0	-	0.5	(0.485,0.523]	chr19	772005	2	INTRON	INTRON	ENSG00000283103	ENSG00000283103.4	ENST00000664481.1:ENST00000634676.2:ENST00000659246.1:ENST00000671228.1:ENST00000658331.1:ENST00000669883.1:ENST00000651375.3:ENST00000669440.2:ENST00000666049.1:ENST00000687313.1	lncRNA	lncRNA	lncRNA	lncRNA	0	88	2	5.47425	5.825975	6.1777	0.0243396	5.64449e-4	0.106588	0.00950156
chr20	64269500	64269599	7511207	0	+	0.393939	(0.39,0.419]	chr20	783907	11	INTRON	INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609818.1	protein_coding	protein_coding	protein_coding	protein_coding	0	93	2	5.45246	5.825975	6.19949	0.0103045	0.00529344	0.0684871	0.044517
chrX	109687430	109687529	8091005	0	-	0.393939	(0.39,0.419]	chrX	843698	16	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000505855.1:ENST00000508092.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	93	2	5.45246	5.825975	6.19949	0.0103045	0.00529344	0.0684871	0.044517
chr12	46757433	46757533	5220769	0	+	0.42	(0.419,0.45]	chr12	506670	1050	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2	lncRNA	lncRNA	lncRNA	lncRNA	0	90	2	5.68676	5.825755	5.96475	0.0169309	0.00338051	0.088829	0.0328791
chr2	163689203	163689303	1295854	0	-	0.42	(0.419,0.45]	chr2	139073	770	INTRON	INTRON	FIGN	ENSG00000182263.14	ENST00000409634.5:ENST00000333129.4:ENST00000482917.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	90	2	5.68676	5.825755	5.96475	0.0169309	0.00338051	0.088829	0.0328791
chr10	100932760	100932859	4569478	0	+	0.373737	(0.36,0.39]	chr10	436158	13	INTRON	INTRON	SLF2	ENSG00000119906.13	ENST00000238961.9:ENST00000649226.1:ENST00000370269.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	89	2	5.73251	5.825395	5.91828	0.0158902	0.0027486	0.0859576	0.028553
chr19	33185741	33185840	7240726	0	+	0.515152	(0.485,0.523]	chr19	741392	72	INTRON	INTRON	LRP3	ENSG00000130881.14	ENST00000592484.5	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.65601	5.825375	5.99474	0.0103305	0.00224147	0.0684871	0.024843
chr7	132990859	132990959	3714940	0	-	0.51	(0.485,0.523]	chr7	356873	152	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	88	2	5.65601	5.825375	5.99474	0.0103305	0.00224147	0.0684871	0.024843
chrX	20265398	20265498	7995415	0	-	0.64	(0.58,1]	chrX	836373	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RPS6KA3	ENSG00000177189.14	ENST00000379565.9:ENST00000643085.1:ENST00000645270.1:ENST00000643402.1:ENST00000644368.1:ENST00000647265.1:ENST00000645268.1:ENST00000646610.1:ENST00000643337.1:ENST00000642835.1:ENST00000644893.1:ENST00000438357.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	1219	2	5.26327	5.82509	6.38691	8.3731e-6	9.71983e-7	0.0017508	1.03091e-4
chr16	89292299	89292398	6659728	0	-	0.555556	(0.523,0.58]	chr16	666648	1	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	467	2	3.92087	5.82498	7.72909	3.78993e-4	1.36979e-4	0.011147	0.00346045
chr2	77010499	77010599	1198129	0	-	0.43	(0.419,0.45]	chr2	130007	2612	INTRON	INTRON	LRRTM4	ENSG00000176204.14	ENST00000409884.6:ENST00000409911.5:ENST00000409093.1	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.52959	5.824745	6.1199	0.0132894	0.00484244	0.0787251	0.0418176
chr5	80985817	80985917	2468492	0	+	0.39	(0.36,0.39]	chr5	246550	244	INTRON	INTRON	RASGRF2	ENSG00000113319.13	ENST00000265080.9:ENST00000503795.1:ENST00000638442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	199	2	4.84697	5.82474	6.80251	0.00357532	3.12014e-4	0.0383635	0.00625316
chr11	70536530	70536630	5059638	0	-	0.64	(0.58,1]	chr11	492663	332	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	87	2	5.50497	5.8246199999999995	6.14427	0.00407804	0.00187297	0.0413652	0.0219434
chr16	85401131	85401231	6517082	0	+	0.66	(0.58,1]	chr16	646391	418	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	224	2	4.98699	5.824615	6.66224	7.34433e-4	5.8343e-5	0.0159847	0.00183149
chr1	9294431	9294527	19598	0	+	0.604167	(0.58,1]	chr1	2201	10	INTRON	INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11	protein_coding	protein_coding	protein_coding	protein_coding	0	85	2	5.43752	5.8241	6.21068	0.0156166	2.44053e-4	0.0849828	0.00522003
chr11	78457806	78457906	5090296	0	-	0.33	(0.29,0.33]	chr11	495308	4	SS3_PROX	SS3_PROX:INTRON	NARS2	ENSG00000137513.11	ENST00000695341.1:ENST00000281038.10:ENST00000695343.1:ENST00000695342.1:ENST00000695344.1:ENST00000529771.2:ENST00000695345.1:ENST00000695115.1:ENST00000695348.1:ENST00000695114.1:ENST00000695346.1:ENST00000695347.1:ENST00000695349.1:ENST00000695116.1:ENST00000695352.1:ENST00000695353.1:ENST00000695351.1:ENST00000695350.1:ENST00000695354.1:ENST00000695355.1:ENST00000528850.5:ENST00000695357.1:ENST00000695366.1:ENST00000695356.1:ENST00000695358.1:ENST00000695359.1:ENST00000695360.1:ENST00000695361.1:ENST00000695362.1:ENST00000525345.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	222	2	3.96065	5.8235149999999996	7.68638	0.0026983	3.43742e-4	0.0283941	0.0106108
chr8	22200617	22200717	3769787	0	+	0.55	(0.523,0.58]	chr8	362646	1	SS3_PROX	SS3_PROX:INTRON	BMP1	ENSG00000168487.20	ENST00000354870.5:ENST00000520970.5:ENST00000518913.5:ENST00000520626.6:ENST00000520982.5:ENST00000306385.10:ENST00000306349.13:ENST00000471755.5:ENST00000483364.5:ENST00000521385.5:ENST00000522332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	87	2	5.55012	5.823449999999999	6.09678	0.0217068	6.74499e-4	0.100615	0.0108081
chr3	6492937	6493036	1399366	0	+	0.363636	(0.36,0.39]	chr3	149923	16	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1	lncRNA	lncRNA	lncRNA	lncRNA	0	90	2	5.61929	5.823415000000001	6.02754	0.0133452	0.00359045	0.0789398	0.0342681
chrX	2234524	2234624	7966183	0	-	0.37	(0.36,0.39]	chrX	834328	129	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.61929	5.823415000000001	6.02754	0.0133452	0.00359045	0.0789398	0.0342681
chr1	48228649	48228749	120986	0	+	0.44	(0.419,0.45]	chr1	15166	4	SS3_PROX	SS3_PROX:INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	89	2	5.62805	5.823	6.01795	0.0280406	0.00152916	0.113651	0.0191213
chr18	50077459	50077559	7165410	0	-	0.45	(0.419,0.45]	chr18	728370	217	INTRON	INTRON	MYO5B	ENSG00000167306.20	ENST00000285039.12:ENST00000586036.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	89	2	5.62805	5.823	6.01795	0.0280406	0.00152916	0.113651	0.0191213
chr11	61774562	61774662	4862722	0	+	0.63	(0.58,1]	chr11	466036	4	SS5_PROX	SS5_PROX:INTRON	MYRF	ENSG00000124920.14	ENST00000278836.10:ENST00000265460.9:ENST00000675319.1	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.08534	5.8229500000000005	6.56056	0.00549379	0.00171861	0.0454065	0.025659
chr13	46567402	46567502	5584048	0	+	0.4	(0.39,0.419]	chr13	550714	133	INTRON	INTRON	LRCH1	ENSG00000136141.15	ENST00000311191.10:ENST00000389797.8:ENST00000443945.6:ENST00000389798.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	90	2	5.61872	5.82245	6.02618	0.0136549	0.00361685	0.0798074	0.0342681
chr5	150508426	150508526	2565095	0	+	0.63	(0.58,1]	chr5	254952	2	SS5_PROX	SS5_PROX:INTRON	NDST1	ENSG00000070614.15	ENST00000522491.1:ENST00000519157.1:ENST00000524161.1:ENST00000523767.5:ENST00000518299.1:ENST00000518346.1:ENST00000261797.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	91	2	5.31036	5.822365	6.33437	0.00312721	0.00276493	0.0332418	0.0311915
chr1	6030527	6030626	6741	0	+	0.363636	(0.36,0.39]	chr1	1420	27	INTRON	INTRON	KCNAB2	ENSG00000069424.16	ENST00000655548.1:ENST00000378111.6:ENST00000378097.6:ENST00000666163.1:ENST00000671676.1:ENST00000658883.1:ENST00000658691.1:ENST00000435937.6:ENST00000445501.6:ENST00000478098.5:ENST00000653262.1:ENST00000668706.1:ENST00000389632.9:ENST00000654144.1:ENST00000341524.6:ENST00000462676.3:ENST00000428161.6:ENST00000352527.6:ENST00000663169.1:ENST00000653635.1:ENST00000661248.1:ENST00000656198.1:ENST00000602612.5:ENST00000481789.2:ENST00000656746.1:ENST00000665338.1:ENST00000666299.1:ENST00000652845.1:ENST00000655703.1:ENST00000669250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	91	2	5.37307	5.822235	6.2714	0.0361409	7.13729e-4	0.127853	0.0112151
chr3	5169303	5169403	1398860	0	+	0.4	(0.39,0.419]	chr3	149795	404	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	199	2	4.64221	5.82198	7.00175	0.00257379	5.53192e-4	0.0321387	0.00941492
chr19	36489112	36489212	7369765	0	-	0.55	(0.523,0.58]	chr19	764032	3	SS5_PROX	SS5_PROX:INTRON	ZNF566	ENSG00000186017.16	ENST00000493391.6:ENST00000392170.7:ENST00000452939.7:ENST00000427002.2:ENST00000424129.7:ENST00000434377.6:ENST00000472909.6:ENST00000460937.5:ENST00000480361.1:ENST00000494354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	263	2	4.8207700000000004	5.821895	6.82302	0.00229691	5.46026e-5	0.0302623	0.00175188
chrX	1417672	1417772	7965656	0	-	0.52	(0.485,0.523]	chrX	834255	3	SS5_PROX	SS5_PROX:INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.55054	5.821865	6.09319	0.0215787	7.11715e-4	0.100612	0.0112082
chr1	9778189	9778289	397748	0	-	0.49	(0.485,0.523]	chr1	45352	44	INTRON	INTRON	CLSTN1	ENSG00000171603.18	ENST00000377298.9:ENST00000650348.1:ENST00000361311.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	87	2	5.73251	5.821455	5.9104	0.0119344	0.00184599	0.0741726	0.0217471
chr2	121655505	121655605	888191	0	+	0.37	(0.36,0.39]	chr2	100466	26	INTRON	INTRON	NIFK-AS1	ENSG00000236859.8	ENST00000667483.1:ENST00000662168.1:ENST00000654001.1:ENST00000659307.1:ENST00000419902.3:ENST00000690074.1:ENST00000666647.1	lncRNA	lncRNA	lncRNA	lncRNA	0	89	2	5.69574	5.82106	5.9463800000000004	0.0151971	0.00299965	0.084474	0.030427
chr17	72423570	72423669	6962523	0	-	0.535354	(0.523,0.58]	chr17	710309	1	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000648907.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000650483.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000647593.1:ENST00000649311.1:ENST00000457958.7:ENST00000649881.1:ENST00000649647.1:ENST00000648401.1:ENST00000649733.1:ENST00000650212.1:ENST00000648520.1:ENST00000649250.1:ENST00000648069.1:ENST00000647953.1:ENST00000650051.1:ENST00000648176.2:ENST00000648403.1:ENST00000580500.5:ENST00000649269.1:ENST00000577828.6:ENST00000577773.3	lncRNA	lncRNA	lncRNA	lncRNA	0	94	2	5.1205	5.82076	6.52102	0.0416463	2.02818e-4	0.136301	0.0045746
chr22	46648620	46648720	7744664	0	+	0.43	(0.419,0.45]	chr22	812052	103	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.64904	5.82042	5.9918	0.0162379	0.00368884	0.0873195	0.0348088
chr7	47353825	47353925	3587329	0	-	0.58	(0.523,0.58]	chr7	346030	71	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	195	2	4.40581	5.82034	7.23487	0.00102861	7.57639e-4	0.0192522	0.0117078
chr10	19358185	19358285	4452416	0	+	0.42	(0.419,0.45]	chr10	426783	55	INTRON	INTRON	MALRD1	ENSG00000204740.11	ENST00000454679.7:ENST00000377266.7	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.59315	5.820195	6.04724	0.029494	0.00142238	0.116079	0.0181715
chr6	87339420	87339517	2951336	0	+	0.43299	(0.419,0.45]	chr6	290444	19	INTRON	INTRON	SMIM8	ENSG00000111850.11	ENST00000608353.5:ENST00000392863.6:ENST00000229570.9:ENST00000448282.6:ENST00000608525.5:ENST00000369572.3:ENST00000608868.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	89	2	5.59315	5.820195	6.04724	0.029494	0.00142238	0.116079	0.0181715
chrX	52957443	52957541	8043482	0	-	0.469388	(0.45,0.485]	chrX	839361	13	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	FAM156A	ENSG00000268350.8	ENST00000613284.1:ENST00000611661.4:ENST00000622732.5:ENST00000622323.5:ENST00000612083.5:ENST00000610625.5:ENST00000618601.5:ENST00000619373.5:ENST00000622447.5:ENST00000619518.5:ENST00000617970.4:ENST00000622197.5:ENST00000612846.5:ENST00000612915.4:ENST00000615092.4:ENST00000623782.3:ENST00000596733.7:ENST00000616592.1:ENST00000619897.4:ENST00000616235.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	213	2	4.11205	5.81995	7.52785	0.00190576	7.00252e-4	0.0222917	0.0156107
chr2	61491448	61491534	1157872	0	-	0.372093	(0.36,0.39]	chr2	126868	3	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000677110.1:ENST00000678113.1:ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000481073.6:ENST00000677476.1:ENST00000469337.2:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676778.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000677157.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	88	2	5.76893	5.819885	5.87084	0.0200694	0.00196738	0.0971995	0.022768300000000002
chr17	46737508	46737608	6746488	0	+	0.47	(0.45,0.485]	chr17	679465	82	INTRON	INTRON	NSF	ENSG00000073969.18	ENST00000398238.8:ENST00000575068.5:ENST00000576346.5:ENST00000465370.1	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.64922	5.819685	5.99015	0.020599	0.00110015	0.0982852	0.015136
chr19	55270637	55270736	7407624	0	-	0.494949	(0.485,0.523]	chr19	771326	40	INTRON	INTRON	HSPBP1	ENSG00000133265.11	ENST00000433386.7:ENST00000255631.9:ENST00000587922.5:ENST00000585927.1:ENST00000587959.1	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.43453	5.819665	6.2048	0.0258944	5.23665e-4	0.109555	0.0090184
chr19	5287833	5287933	7316486	0	-	0.48	(0.45,0.485]	chr19	755347	12	INTRON	INTRON	PTPRS	ENSG00000105426.18	ENST00000588552.5:ENST00000262963.11:ENST00000591760.5:ENST00000586065.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	87	2	5.8121	5.8195	5.8269	0.0158765	0.00167585	0.0859576	0.0203806
chr16	78906026	78906126	6503479	0	+	0.4	(0.39,0.419]	chr16	645717	1257	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	100	2	4.99538	5.819235	6.64309	0.0613573	2.66223e-4	0.158506	0.00556524
chr13	50131173	50131272	5593905	0	+	0.50505	(0.485,0.523]	chr13	551522	241	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5	lncRNA	lncRNA	lncRNA	lncRNA	0	88	2	5.61619	5.818994999999999	6.0218	0.00985907	0.00247695	0.0670775	0.0266492
chr13	50641592	50641692	5599043	0	+	0.58	(0.523,0.58]	chr13	551695	101	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1	lncRNA	lncRNA	lncRNA	lncRNA	3	763	2	4.973	5.81874	6.66448	4.13369e-5	3.3605e-5	0.00356738	0.00122772
chr15	77112655	77112755	6332476	0	-	0.49	(0.485,0.523]	chr15	624450	121	UTR3	UTR3:EXON_MRNA	PEAK1	ENSG00000173517.11	ENST00000560626.6:ENST00000682557.1:ENST00000312493.5	protein_coding	protein_coding	protein_coding	protein_coding	1	193	2	4.47284	5.8185400000000005	7.16424	0.0011719	6.43746e-4	0.0206836	0.0104271
chr4	77819232	77819303	2256074	0	-	0.577465	(0.523,0.58]	chr4	227834	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CNOT6L	ENSG00000138767.14	ENST00000504123.7:ENST00000649644.1:ENST00000512485.6:ENST00000504804.7:ENST00000506166.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	87	2	5.69834	5.818490000000001	5.93864	0.0114442	0.00194036	0.0723462	0.0225083
chr6	15433831	15433930	2858387	0	+	0.424242	(0.419,0.45]	chr6	279190	231	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	0	94	2	5.39934	5.818445	6.23755	0.0110181	0.00646489	0.0708586	0.0503748
chr16	85426520	85426620	6517336	0	+	0.48	(0.45,0.485]	chr16	646391	672	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	100	2	5.12938	5.818385	6.50739	0.00873194	0.00482293	0.0612699	0.0453395
chr10	116893539	116893638	4767515	0	-	0.555556	(0.523,0.58]	chr10	455836	66	INTRON	INTRON	SHTN1	ENSG00000187164.20	ENST00000355371.9:ENST00000615301.4:ENST00000260777.14:ENST00000497044.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	386	2	3.95773	5.818365	7.679	4.19964e-4	1.82236e-4	0.011772	0.00423552
chr8	630937	631036	3932029	0	-	0.585859	(0.58,1]	chr8	376005	33	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	83	2	5.70191	5.818325	5.93474	0.00964351	5.58693e-4	0.0659937	0.00944382
chr4	3361601	3361701	2005052	0	+	0.65	(0.58,1]	chr4	204663	182	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	83	2	5.73602	5.8182849999999995	5.90055	0.00904546	6.1741e-4	0.0637469	0.0101143
chr8	143323403	143323498	4095562	0	-	0.642105	(0.58,1]	chr8	389125	17	INTRON	INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	177	2	5.13424	5.81827	6.5023	0.00194503	4.81873e-5	0.0275844	0.00160255
chr12	6767819	6767913	5165694	0	+	0.553191	(0.523,0.58]	chr12	502315	7	INTRON	INTRON	PTMS	ENSG00000159335.18	ENST00000540667.5:ENST00000309083.8:ENST00000389462.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	89	2	5.53665	5.81813	6.09961	0.00866655	0.00291382	0.0623824	0.0298557
chr17	77486324	77486423	6805245	0	+	0.545455	(0.523,0.58]	chr17	686821	23	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	232	2	4.62501	5.818115	7.01122	0.00285047	4.65929e-5	0.0338638	0.00156314
chr12	132542723	132542823	5353043	0	+	0.58	(0.523,0.58]	chr12	523670	144	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.72487	5.8180700000000005	5.91127	0.0163679	0.00111349	0.0875379	0.0152496
chr22	21856325	21856425	7770063	0	-	0.54	(0.523,0.58]	chr22	814807	481	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	1	189	2	4.99261	5.817864999999999	6.64312	0.00323048	1.34343e-4	0.0362983	0.00339846
chr7	99381152	99381252	3427408	0	+	0.58	(0.523,0.58]	chr7	331164	33	INTRON	INTRON	ARPC1B	ENSG00000130429.16	ENST00000443222.6:ENST00000414376.6:ENST00000645391.1:ENST00000695607.1:ENST00000455009.6:ENST00000484375.5:ENST00000695608.1:ENST00000418347.6:ENST00000646101.2:ENST00000427217.6:ENST00000451682.5:ENST00000431816.6:ENST00000458033.6:ENST00000417330.6:ENST00000695609.1:ENST00000484600.6:ENST00000429246.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	86	2	5.69157	5.817729999999999	5.94389	0.0172851	0.0010207	0.0897247	0.0143498
chr22	50682353	50682450	7754993	0	+	0.556701	(0.523,0.58]	chr22	812716	26	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	86	2	5.75742	5.81766	5.8779	0.0155135	0.00121652	0.0849828	0.0162693
chr16	88579122	88579222	6521590	0	+	0.48	(0.45,0.485]	chr16	646718	10	INTRON	INTRON	ZC3H18	ENSG00000158545.16	ENST00000301011.10:ENST00000452588.6:ENST00000569435.5	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.61431	5.8175	6.02069	0.0217589	0.00101549	0.100615	0.0143256
chr5	81021484	81021584	2468849	0	+	0.48	(0.45,0.485]	chr5	246554	15	INTRON	INTRON	RASGRF2	ENSG00000113319.13	ENST00000265080.9:ENST00000503795.1:ENST00000638442.1:ENST00000514946.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	87	2	5.61431	5.8175	6.02069	0.0217589	0.00101549	0.100615	0.0143256
chr10	132711953	132712053	4618587	0	+	0.63	(0.58,1]	chr10	441181	11	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000487614.1:ENST00000498337.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	83	2	5.76934	5.817435	5.86553	0.00849371	6.8352e-4	0.0617717	0.0108717
chr21	45433643	45433743	7630599	0	+	0.5	(0.485,0.523]	chr21	797656	278	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.5129	5.817405	6.12191	0.0229047	6.58016e-4	0.102982	0.0106077
chr1	9356785	9356885	20224	0	+	0.38	(0.36,0.39]	chr1	2216	2	SS5_PROX	SS5_PROX:INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11:ENST00000357898.3:ENST00000377399.2	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.4139	5.8172250000000005	6.22055	0.0340874	8.14665e-4	0.125059	0.0123172
chr18	26016729	26016825	7132553	0	-	0.364583	(0.36,0.39]	chr18	725813	6	UTR3	UTR3:EXON_MRNA	SS18	ENSG00000141380.14	ENST00000415083.7	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.6372	5.817135	5.99707	0.024533	0.00143949	0.106796	0.0183435
chr10	132572942	132573042	4617190	0	+	0.52	(0.485,0.523]	chr10	441139	344	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	1	190	2	4.58284	5.816725	7.05061	0.00146547	4.69507e-4	0.023492	0.00833265
chr17	14027375	14027475	6858914	0	-	0.43	(0.419,0.45]	chr17	694957	1283	INTRON	INTRON	COX10-DT	ENSG00000236088.11	ENST00000582752.7:ENST00000690301.1:ENST00000662986.1:ENST00000686809.1:ENST00000686296.1:ENST00000602539.2:ENST00000602743.1	lncRNA	lncRNA	lncRNA	lncRNA	0	96	2	5.1405	5.816625	6.49275	0.0550015	4.54324e-4	0.153337	0.00818426
chr16	8640357	8640448	6381023	0	+	0.494505	(0.485,0.523]	chr16	631103	3	INTRON	INTRON	METTL22	ENSG00000067365.15	ENST00000163678.11:ENST00000381920.8:ENST00000561758.5:ENST00000568967.5:ENST00000572956.5:ENST00000561993.5:ENST00000563501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	89	2	5.53308	5.81656	6.10004	0.00860355	0.00304306	0.0623467	0.0306636
chr19	23322581	23322681	7358009	0	-	0.37	(0.36,0.39]	chr19	762771	121	INTRON	INTRON	ZNF91	ENSG00000167232.14	ENST00000596528.1:ENST00000596989.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	90	2	5.57948	5.816545	6.05361	0.0127951	0.00393844	0.0769416	0.0367306
chr2	10669511	10669608	1086925	0	-	0.381443	(0.36,0.39]	chr2	118426	4	INTRON	INTRON	NOL10	ENSG00000115761.17	ENST00000695464.1:ENST00000695470.1:ENST00000695467.1:ENST00000695468.1:ENST00000695469.1:ENST00000381685.10:ENST00000695471.1:ENST00000345985.7:ENST00000538384.5:ENST00000695472.1:ENST00000695473.1:ENST00000695475.1:ENST00000695476.1:ENST00000695477.1:ENST00000695478.1:ENST00000695479.1:ENST00000431319.2:ENST00000695480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	90	2	5.57948	5.816545	6.05361	0.0127951	0.00393844	0.0769416	0.0367306
chr1	153611868	153611965	591012	0	-	0.505155	(0.485,0.523]	chr1	68765	27	INTRON	INTRON	S100A16	ENSG00000188643.11	ENST00000368706.9:ENST00000474991.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	86	2	5.7253	5.816495	5.90769	0.0162644	0.0011708	0.0873195	0.0157899
chr3	119930015	119930115	1885457	0	-	0.55	(0.523,0.58]	chr3	191353	57	INTRON	INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000677502.1:ENST00000676566.1:ENST00000650344.2:ENST00000678181.1:ENST00000678561.1:ENST00000678787.1:ENST00000679066.1:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000677885.1:ENST00000678350.1:ENST00000676775.1:ENST00000677878.1:ENST00000677875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	86	2	5.78924	5.816485	5.84373	0.0147166	0.00133116	0.0826843	0.0173248
chr17	46058669	46058769	6916475	0	-	0.43	(0.419,0.45]	chr17	704516	76	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	89	2	5.72351	5.8163	5.90909	0.0184411	0.00310292	0.0927235	0.0311614
chr6	26134179	26134278	2886766	0	+	0.434343	(0.419,0.45]	chr6	280754	91	INTRON	INTRON	H2AC6	ENSG00000180573.10	ENST00000314088.6:ENST00000602637.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	89	2	5.72351	5.8163	5.90909	0.0184411	0.00310292	0.0927235	0.0311614
chr19	36605730	36605830	7248626	0	+	0.49	(0.485,0.523]	chr19	743032	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF382	ENSG00000161298.19	ENST00000423582.5:ENST00000292928.7:ENST00000460670.5:ENST00000460384.1:ENST00000463910.1:ENST00000439428.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	86	2	5.692	5.816155	5.94031	0.0171772	0.00107389	0.0895975	0.0148869
chr8	130428400	130428500	4083486	0	-	0.49	(0.485,0.523]	chr8	388192	7	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000524299.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	86	2	5.75784	5.816075	5.87431	0.0154142	0.00127835	0.0849828	0.0168904
chr17	72552835	72552935	6963839	0	-	0.51	(0.485,0.523]	chr17	710389	184	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	204	2	5.3872	5.816025	6.24485	0.00665813	4.11881e-5	0.0540577	0.00142862
chr1	1031617	1031717	1031	0	+	0.63	(0.58,1]	chr1	166	88	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	5.63118	5.8159849999999995	6.00079	0.0109983	4.59827e-4	0.0708586	0.00821903
chr6	99413239	99413331	3208653	0	-	0.391304	(0.39,0.419]	chr6	311556	1	INTRON	INTRON	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5:ENST00000478777.5:ENST00000492294.5:ENST00000498075.1:ENST00000466057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	88	2	5.80276	5.81597	5.82918	0.0186329	0.00233691	0.0932878	0.0257208
chr5	139160164	139160264	2772310	0	-	0.45	(0.419,0.45]	chr5	272014	48	INTRON	INTRON	SIL1	ENSG00000120725.13	ENST00000394817.7:ENST00000265195.9:ENST00000509534.5:ENST00000508639.5:ENST00000507002.5:ENST00000505830.5:ENST00000504666.5:ENST00000509400.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	92	2	5.48746	5.815835	6.14421	0.0127879	0.00532156	0.0769397	0.0446153
chr9	35228642	35228741	4142606	0	+	0.434343	(0.419,0.45]	chr9	393952	2	INTRON	INTRON	UNC13B	ENSG00000198722.15	ENST00000617908.4:ENST00000619578.4:ENST00000396787.5:ENST00000635942.2:ENST00000378495.7:ENST00000634487.1:ENST00000485086.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	92	2	5.48746	5.815835	6.14421	0.0127879	0.00532156	0.0769397	0.0446153
chr4	185735445	185735544	2371553	0	-	0.40404	(0.39,0.419]	chr4	237037	9	INTRON	INTRON	SORBS2	ENSG00000154556.19	ENST00000284776.11:ENST00000695409.1:ENST00000319471.13:ENST00000437304.6:ENST00000449407.6:ENST00000355634.9:ENST00000451974.6:ENST00000393528.7:ENST00000487184.2:ENST00000695410.1:ENST00000319454.10:ENST00000695411.1:ENST00000470685.5:ENST00000445343.5:ENST00000439914.5:ENST00000444771.5:ENST00000450341.5:ENST00000430503.5:ENST00000445115.5:ENST00000457247.5:ENST00000456596.5:ENST00000425679.5:ENST00000439049.5:ENST00000451958.5:ENST00000444781.5:ENST00000414724.5:ENST00000419063.5:ENST00000393523.6:ENST00000420158.5:ENST00000421639.5:ENST00000493709.5:ENST00000457934.5:ENST00000431902.5:ENST00000415274.5:ENST00000435480.5:ENST00000432655.5:ENST00000451701.5:ENST00000428330.5:ENST00000464975.5:ENST00000464819.5:ENST00000478249.5:ENST00000452351.5:ENST00000429056.5:ENST00000463104.5:ENST00000456060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	246	2	4.61626	5.815775	7.01529	0.00386069	9.4123e-5	0.0401256	0.00261888
chr6	154794808	154794908	3044730	0	+	0.32	(0.29,0.33]	chr6	296651	4	SS3_PROX	SS3_PROX:INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000367178.8	protein_coding	protein_coding	protein_coding	protein_coding	0	95	2	5.07676	5.815685	6.55461	0.0412683	2.0962e-4	0.136301	0.00467341
chr7	55124097	55124197	3372598	0	+	0.3	(0.29,0.33]	chr7	325297	48	INTRON	INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000450046.1	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.79652	5.815645	5.83477	0.0131751	0.00150459	0.0785398	0.0188758
chr1	162801477	162801572	257639	0	+	0.378947	(0.36,0.39]	chr1	30713	8	INTRON	INTRON	HSD17B7	ENSG00000132196.16	ENST00000254521.8:ENST00000485405.5:ENST00000649629.1:ENST00000494450.1:ENST00000470195.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	98	2	5.214	5.81555	6.4171	0.00887999	0.00699528	0.0618231	0.0555241
chr2	235999010	235999110	1067606	0	+	0.46	(0.45,0.485]	chr2	115748	300	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5:ENST00000418654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	192	2	4.64267	5.815474999999999	6.98828	0.00198597	4.4327e-4	0.0279914	0.00804207
chr6	128134962	128135062	3253303	0	-	0.42	(0.419,0.45]	chr6	315160	446	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000531050.5:ENST00000524534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	204	2	5.01737	5.815379999999999	6.61339	0.0059347	2.13475e-4	0.0506158	0.00475054
chr10	18553969	18554069	4642268	0	-	0.37	(0.36,0.39]	chr10	443321	16	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.45303	5.81518	6.17733	0.0104543	0.00525731	0.0688771	0.044445
chr2	149743959	149744059	921386	0	+	0.49	(0.485,0.523]	chr2	102793	2	SS5_PROX	SS5_PROX:INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	0	86	2	5.65791	5.81506	5.97221	0.0181582	9.86421e-4	0.0921579	0.0140716
chr21	41828932	41829031	7673611	0	-	0.474747	(0.45,0.485]	chr21	801978	2	INTRON	INTRON	PRDM15	ENSG00000141956.14	ENST00000422911.6:ENST00000441787.5:ENST00000449395.6:ENST00000398548.6:ENST00000447016.6:ENST00000269844.5:ENST00000491486.5:ENST00000489661.5:ENST00000496124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	88	2	5.46558	5.81499	6.1644	0.0273644	6.92954e-4	0.112372	0.0109657
chr11	3811924	3812023	4788184	0	+	0.434343	(0.419,0.45]	chr11	458830	1	INTRON	INTRON	PGAP2	ENSG00000148985.20	ENST00000528216.5:ENST00000300730.10:ENST00000396986.6:ENST00000532535.5:ENST00000396993.8:ENST00000465237.6:ENST00000477358.6:ENST00000532523.5:ENST00000459679.5:ENST00000464229.5:ENST00000490830.5:ENST00000464261.5:ENST00000464906.6:ENST00000524661.5:ENST00000485602.5:ENST00000475884.5:ENST00000489571.5:ENST00000464441.5:ENST00000532017.5:ENST00000465307.6:ENST00000493547.6:ENST00000495026.5:ENST00000534498.1:ENST00000396991.6:ENST00000525937.1:ENST00000478773.5:ENST00000278243.9:ENST00000483829.5:ENST00000487112.5:ENST00000463452.6:ENST00000496834.6:ENST00000479072.5:ENST00000469307.4:ENST00000464590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	90	2	5.44447	5.814935	6.1854	0.0364384	0.00100635	0.128173	0.0142602
chr2	232898584	232898683	1383824	0	-	0.474747	(0.45,0.485]	chr2	147952	33	INTRON	INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000416114.3:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	87	2	5.57854	5.81457	6.0506	0.0230065	9.38528e-4	0.102982	0.0135546
chr9	93662606	93662706	4184524	0	+	0.47	(0.45,0.485]	chr9	397768	3	SS3_PROX	SS3_PROX:INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.57854	5.81457	6.0506	0.0230065	9.38528e-4	0.102982	0.0135546
chr22	42968977	42969076	7823822	0	-	0.424242	(0.419,0.45]	chr22	820626	92	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	371	2	3.93787	5.81442	7.69097	8.81239e-4	4.34677e-4	0.0176886	0.007918
chr17	6882910	6883010	6675477	0	+	0.46	(0.45,0.485]	chr17	669304	236	INTRON	INTRON	ALOX12P2	ENSG00000262943.8	ENST00000574727.5:ENST00000691074.1:ENST00000685813.1:ENST00000574271.6:ENST00000576636.6:ENST00000570835.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	0	88	2	5.6428	5.814405000000001	5.98601	0.0119228	0.00265386	0.0741726	0.027979
chr20	16433577	16433677	7530309	0	-	0.38	(0.36,0.39]	chr20	785851	32	INTRON	INTRON	KIF16B	ENSG00000089177.19	ENST00000354981.7:ENST00000636835.1:ENST00000408042.5	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.76835	5.8143650000000004	5.86038	0.0174081	0.00252253	0.0901374	0.0270357
chr11	11874953	11875052	4799023	0	+	0.444444	(0.419,0.45]	chr11	460294	7	INTRON	INTRON	USP47	ENSG00000170242.19	ENST00000339865.9:ENST00000525257.1:ENST00000527733.7:ENST00000399455.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	90	2	5.61031	5.814325	6.01834	0.015582500000000001	0.004032	0.0849828	0.0371291
chr12	4697707	4697807	5163310	0	+	0.45	(0.419,0.45]	chr12	501758	35	INTRON	INTRON	ENSG00000255639	ENSG00000255639.3	ENST00000648836.1:ENST00000543979.1:ENST00000544741.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	90	2	5.61031	5.814325	6.01834	0.015582500000000001	0.004032	0.0849828	0.0371291
chr15	42565328	42565425	6088859	0	+	0.42268	(0.419,0.45]	chr15	599091	11	INTRON	INTRON	HAUS2	ENSG00000137814.12	ENST00000568876.5:ENST00000567640.5:ENST00000260372.8:ENST00000391623.8:ENST00000563479.5:ENST00000564279.5:ENST00000570178.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	90	2	5.61031	5.814325	6.01834	0.015582500000000001	0.004032	0.0849828	0.0371291
chr2	152438976	152439076	926501	0	+	0.34	(0.33,0.36]	chr2	103058	1029	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	1	194	2	4.77033	5.814085	6.85784	0.00265287	3.48103e-4	0.0326475	0.00674463
chr10	79220573	79220673	4533567	0	+	0.58	(0.523,0.58]	chr10	432457	39	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	500	2	5.71583	5.81385	5.91187	3.11951e-4	7.26418e-6	0.0100453	4.10219e-4
chr16	3065926	3066026	6376268	0	+	0.64	(0.58,1]	chr16	630283	1	SS5_PROX	SS5_PROX:INTRON	IL32	ENSG00000008517.19	ENST00000325568.9:ENST00000613483.4:ENST00000534507.5:ENST00000396887.7:ENST00000531965.5:ENST00000532086.1:ENST00000529699.5:ENST00000440815.7:ENST00000526464.6:ENST00000529550.5:ENST00000551122.5:ENST00000548807.5:ENST00000528163.6:ENST00000444393.7:ENST00000530890.5:ENST00000533097.6:ENST00000008180.13:ENST00000534748.6:ENST00000396890.6:ENST00000532247.5:ENST00000548652.5:ENST00000525643.7:ENST00000525228.5:ENST00000525377.6:ENST00000530538.6:ENST00000549213.5:ENST00000548476.5:ENST00000552936.5:ENST00000552664.5:ENST00000552356.5:ENST00000551513.5:ENST00000382213.7:ENST00000548246.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	89	2	5.36153	5.8137550000000005	6.26598	0.00318361	0.00273899	0.0360488	0.028553
chr6	158573119	158573219	3064026	0	+	0.65	(0.58,1]	chr6	297688	3	SS3_PROX	SS3_PROX:INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	5	847	2	5.01852	5.813575	6.60863	1.00721e-4	2.49048e-7	0.00560072	4.18266e-5
chr11	78457706	78457806	5090295	0	-	0.36	(0.33,0.36]	chr11	495308	3	SS3_PROX	SS3_PROX:INTRON	NARS2	ENSG00000137513.11	ENST00000695341.1:ENST00000281038.10:ENST00000695343.1:ENST00000695342.1:ENST00000695344.1:ENST00000529771.2:ENST00000695345.1:ENST00000695115.1:ENST00000695348.1:ENST00000695114.1:ENST00000695346.1:ENST00000695347.1:ENST00000695349.1:ENST00000695116.1:ENST00000695352.1:ENST00000695353.1:ENST00000695351.1:ENST00000695350.1:ENST00000695354.1:ENST00000695355.1:ENST00000528850.5:ENST00000695357.1:ENST00000695366.1:ENST00000695356.1:ENST00000695358.1:ENST00000695359.1:ENST00000695360.1:ENST00000695361.1:ENST00000695362.1:ENST00000525345.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	91	2	5.46355	5.813425	6.1633	0.00914439	0.00462971	0.0642449	0.0408278
chr13	112693245	112693344	5652572	0	+	0.545455	(0.523,0.58]	chr13	554894	24	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5	protein_coding	protein_coding	protein_coding	protein_coding	5	1082	2	5.76416	5.812915	5.86167	8.73654e-5	1.10604e-6	0.00518923	1.11364e-4
chr7	152257815	152257915	3735693	0	-	0.39	(0.36,0.39]	chr7	359181	47	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682916.1:ENST00000682280.1:ENST00000680039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	91	2	5.49642	5.812765	6.12911	0.0113159	0.00476539	0.0722887	0.0414441
chr6	323210	323308	2824059	0	+	0.438776	(0.419,0.45]	chr6	277200	25	INTRON	INTRON	DUSP22	ENSG00000112679.15	ENST00000603296.5:ENST00000344450.9:ENST00000603453.5:ENST00000605315.5:ENST00000603881.5:ENST00000603795.5:ENST00000605035.5:ENST00000605863.5:ENST00000419235.7:ENST00000603005.5:ENST00000603726.5:ENST00000603290.1:ENST00000605391.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	89	2	5.52073	5.812415	6.1041	0.0327198	0.00123471	0.122543	0.0164614
chr11	70743683	70743783	5061718	0	-	0.63	(0.58,1]	chr11	492701	258	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	86	2	5.50497	5.8118099999999995	6.11865	0.00429384	0.00187297	0.042386	0.0219434
chr1	150384612	150384712	242056	0	+	0.52	(0.485,0.523]	chr1	27348	193	INTRON	INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8:ENST00000369067.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	88	2	5.57523	5.81179	6.04835	0.00941539	0.00274261	0.0653252	0.028553
chr11	68264854	68264951	5057268	0	-	0.56701	(0.523,0.58]	chr11	492361	6	INTRON	INTRON	C11orf24	ENSG00000171067.11	ENST00000304271.11:ENST00000533310.5:ENST00000530166.5:ENST00000527280.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	98	2	5.14602	5.8115950000000005	6.47717	0.00734367	0.00439843	0.0550721	0.0429852
chr3	48933303	48933403	1465071	0	+	0.52	(0.485,0.523]	chr3	156612	51	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000452882.5:ENST00000498314.5:ENST00000474618.5:ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000420814.5:ENST00000486316.5:ENST00000474936.6:ENST00000484999.5:ENST00000470296.5:ENST00000463204.5:ENST00000452385.5:ENST00000495507.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	87	2	5.65601	5.811590000000001	5.96717	0.0108319	0.00224147	0.0707085	0.024843
chr3	4007378	4007478	1673224	0	-	0.45	(0.419,0.45]	chr3	175305	1795	INTRON	INTRON	SUMF1	ENSG00000144455.14	ENST00000448413.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	88	2	5.72794	5.81119	5.89444	0.0242188	0.00206691	0.106588	0.0235758
chr10	32040557	32040657	4662183	0	-	0.33	(0.29,0.33]	chr10	445111	1	SS3_PROX	SS3_PROX:INTRON	KIF5B	ENSG00000170759.11	ENST00000302418.5	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.76391	5.811030000000001	5.85815	0.011855	0.0018044	0.0740271	0.0215053
chr5	176588431	176588530	2596939	0	+	0.474747	(0.45,0.485]	chr5	257747	12	INTRON	INTRON	CDHR2	ENSG00000074276.11	ENST00000510636.5:ENST00000261944.10:ENST00000506348.1:ENST00000513031.5:ENST00000508085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	87	2	5.54186	5.81088	6.0799	0.0243502	8.68466e-4	0.106588	0.0128564
chr16	85233165	85233265	6515400	0	+	0.55	(0.523,0.58]	chr16	646377	54	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	92	2	5.35452	5.81086	6.2672	0.00644151	0.00453096	0.0530091	0.0400651
chr17	18717144	18717243	6692055	0	+	0.434343	(0.419,0.45]	chr17	671749	116	INTRON	INTRON	TRIM16L	ENSG00000108448.23	ENST00000572555.5:ENST00000581904.6:ENST00000449552.6:ENST00000571708.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	88	2	5.75975	5.810795000000001	5.86184	0.0231013	0.00223565	0.102982	0.024843
chr21	45474081	45474181	7631007	0	+	0.49	(0.485,0.523]	chr21	797673	1	SS5_PROX	SS5_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	1	188	2	4.65178	5.81067	6.96956	0.00171649	3.84341e-4	0.025659	0.00726694
chr22	19823772	19823871	7764465	0	-	0.464646	(0.45,0.485]	chr22	813913	20	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	87	2	5.71928	5.810475	5.90167	0.0137135	0.00219685	0.0799457	0.0245167
chr13	112972246	112972346	5655343	0	+	0.55	(0.523,0.58]	chr13	555120	24	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	1	248	2	4.95552	5.8102350000000005	6.66495	0.00148364	1.32802e-4	0.0236439	0.00337193
chr14	35314854	35314953	5780583	0	+	0.373737	(0.36,0.39]	chr14	566696	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ENSG00000258790:PSMA6	ENSG00000258790.1:ENSG00000100902.11	ENST00000557565.1:ENST00000540871.5:ENST00000622405.4:ENST00000554541.5:ENST00000261479.9:ENST00000554961.5:ENST00000553809.5:ENST00000555764.5:ENST00000556506.1:ENST00000556221.1:ENST00000554457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	199	2	4.51402	5.810195	7.10637	0.00206645	7.79455e-4	0.0285954	0.0119255
chr19	34504148	34504247	7244310	0	+	0.515152	(0.485,0.523]	chr19	741946	40	UTR3	UTR3:EXON_MRNA	WTIP	ENSG00000142279.13	ENST00000590071.7	protein_coding	protein_coding	protein_coding	protein_coding	0	91	2	5.39869	5.810195	6.2217	0.00693912	0.00421243	0.0553898	0.0380601
chr1	12582160	12582259	402424	0	-	0.424242	(0.419,0.45]	chr1	46222	11	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	206	2	4.35858	5.810135	7.26169	0.00192168	0.00126891	0.0274718	0.0168159
chr10	79164131	79164230	4532998	0	+	0.666667	(0.58,1]	chr10	432438	16	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	5.75506	5.809985	5.86491	0.00707578	9.38062e-4	0.0558168	0.0135546
chr11	791242	791338	4969403	0	-	0.65625	(0.58,1]	chr11	480765	9	UTR3	UTR3:EXON_MRNA	SLC25A22	ENSG00000177542.11	ENST00000628067.3:ENST00000320230.9	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	5.75506	5.809985	5.86491	0.00707578	9.38062e-4	0.0558168	0.0135546
chr22	20124819	20124917	7686891	0	+	0.591837	(0.58,1]	chr22	804214	8	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000331821.7:ENST00000411892.5:ENST00000423859.5:ENST00000418705.2:ENST00000448394.2:ENST00000486575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	83	2	5.75506	5.809985	5.86491	0.00707578	9.38062e-4	0.0558168	0.0135546
chr1	230984319	230984419	362187	0	+	0.45	(0.419,0.45]	chr1	40833	44	INTRON	INTRON	ARV1	ENSG00000173409.14	ENST00000497753.1:ENST00000310256.7:ENST00000366658.6:ENST00000480519.5:ENST00000450711.5:ENST00000435927.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	88	2	5.79088	5.80968	5.82848	0.022052	0.00242141	0.101502	0.0261589
chr12	49385256	49385356	5225346	0	+	0.36	(0.33,0.36]	chr12	507159	136	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549538.5:ENST00000549412.5:ENST00000550643.5:ENST00000548654.5:ENST00000548710.5:ENST00000549179.5:ENST00000548377.5:ENST00000549298.5:ENST00000552918.6:ENST00000549375.5:ENST00000553127.5:ENST00000321898.10:ENST00000551540.5:ENST00000548777.5:ENST00000552171.1:ENST00000547865.5:ENST00000548388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	87	2	5.77893	5.8096499999999995	5.84037	0.0156381	0.00218403	0.0850479	0.0244273
chr14	68900946	68901046	5999350	0	-	0.51	(0.485,0.523]	chr14	588709	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	230	2	4.59595	5.809430000000001	7.02291	0.00299988	4.77916e-5	0.0348875	0.00159602
chr16	85233465	85233565	6515403	0	+	0.49	(0.485,0.523]	chr16	646377	57	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	92	2	5.35096	5.809295	6.26763	0.00639185	0.0047171	0.0529032	0.0413976
chr1	213068905	213069005	337227	0	+	0.54	(0.523,0.58]	chr1	37980	170	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.49322	5.809	6.12478	0.00829271	0.00324246	0.0610772	0.0319521
chr19	38380598	38380698	7257530	0	+	0.53	(0.523,0.58]	chr19	743869	3	SS3_PROX	SS3_PROX:INTRON	PSMD8	ENSG00000099341.12	ENST00000620216.4:ENST00000215071.9:ENST00000585598.1:ENST00000602911.5:ENST00000592561.5:ENST00000592001.5:ENST00000592035.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	89	2	5.49322	5.809	6.12478	0.00829271	0.00324246	0.0610772	0.0319521
chr8	23094666	23094765	3772961	0	+	0.484848	(0.45,0.485]	chr8	363266	40	INTRON	INTRON	ENSG00000284948	ENSG00000284948.1	ENST00000397703.6	lncRNA	lncRNA	lncRNA	lncRNA	0	90	2	5.47648	5.808835	6.14119	0.00917101	0.0039628	0.064285	0.0368027
chr1	247308174	247308274	709368	0	-	0.56	(0.523,0.58]	chr1	82907	3	SS5_PROX	SS5_PROX:INTRON	ZNF496	ENSG00000162714.13	ENST00000294753.8:ENST00000462139.1:ENST00000682384.1:ENST00000461277.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	86	2	5.73609	5.8084050000000005	5.88072	0.0126258	0.0017613	0.0761905	0.0211077
chr17	32374904	32375004	6721362	0	+	0.36	(0.33,0.36]	chr17	675184	16	UTR3	UTR3:EXON_MRNA:INTRON	ZNF207	ENSG00000010244.19	ENST00000394670.9:ENST00000577908.5:ENST00000581531.5:ENST00000579810.2:ENST00000584416.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	312	2	4.02682	5.80832	7.58982	6.54904e-4	4.11646e-4	0.0150589	0.0076383
chr22	19422125	19422225	7763477	0	-	0.26	[0,0.29]	chr22	813787	110	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	84	2	5.6245	5.808225	5.99195	0.0120701	7.44037e-4	0.0745322	0.0115713
chr3	98746178	98746278	1516348	0	+	0.44	(0.419,0.45]	chr3	161540	122	INTRON	INTRON	ST3GAL6	ENSG00000064225.13	ENST00000489112.5:ENST00000265261.11:ENST00000460774.5:ENST00000469105.5:ENST00000466482.5:ENST00000462152.5:ENST00000486249.5:ENST00000497008.5:ENST00000486334.6:ENST00000394162.5:ENST00000613264.5:ENST00000480133.1:ENST00000465004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	90	2	5.40477	5.80814	6.21151	0.0385125	9.41863e-4	0.131324	0.0135546
chr15	25016300	25016398	6064016	0	+	0.367347	(0.36,0.39]	chr15	595414	12	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	5	1175	2	5.78403	5.808075	5.83212	1.69204e-4	1.96381e-6	0.00728	1.6437e-4
chr17	2801549	2801649	6667858	0	+	0.5	(0.485,0.523]	chr17	668029	6	INTRON	INTRON	RAP1GAP2	ENSG00000132359.15	ENST00000637138.1:ENST00000540393.6:ENST00000254695.13:ENST00000366401.8:ENST00000542807.1	protein_coding	protein_coding	protein_coding	protein_coding	0	102	2	5.02573	5.8080300000000005	6.59033	0.00985879	0.00353829	0.0664239	0.0381878
chr5	881863	881960	2608194	0	-	0.536082	(0.523,0.58]	chr5	259472	8	EXON_MRNA	EXON_MRNA:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	230	2	4.04945	5.807975	7.5665	0.00846308	8.08882e-6	0.0617717	4.41353e-4
chr12	19503315	19503415	5183711	0	+	0.41	(0.39,0.419]	chr12	504373	27	INTRON	INTRON	AEBP2	ENSG00000139154.16	ENST00000541908.5:ENST00000266508.14:ENST00000398864.7:ENST00000673644.1:ENST00000360995.8:ENST00000673824.1:ENST00000512223.6:ENST00000398731.3	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.53798	5.80792	6.07786	0.012565	0.0043589	0.0761905	0.0391245
chr9	134338137	134338236	4260804	0	+	0.646465	(0.58,1]	chr9	406311	111	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	85	2	5.54978	5.807885000000001	6.06599	0.00477081	0.00165911	0.0450109	0.0202545
chr16	89431255	89431326	6661146	0	-	0.577465	(0.523,0.58]	chr16	666750	1	UTR5	UTR5:EXON_MRNA:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	87	2	5.43411	5.8077000000000005	6.18129	0.026041	5.34061e-4	0.109673	0.0091384
chr1	1063666	1063705	1374	0	+	0.615385	(0.58,1]	chr1	315	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000217801	ENSG00000217801.11	ENST00000688131.1:ENST00000456409.6:ENST00000692821.1:ENST00000394517.7:ENST00000427998.6:ENST00000685011.1:ENST00000692266.1:ENST00000412397.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	173	2	4.94491	5.807685	6.67046	0.00135763	9.06847e-5	0.0224546	0.00254217
chr4	6299758	6299858	2010599	0	+	0.52	(0.485,0.523]	chr4	205141	42	INTRON	INTRON	WFS1	ENSG00000109501.15	ENST00000673991.1:ENST00000503569.5:ENST00000226760.5:ENST00000682275.1:ENST00000506362.2:ENST00000684087.1:ENST00000683395.1:ENST00000673642.1:ENST00000507765.1:ENST00000513395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	89	2	5.48966	5.807435	6.12521	0.00823189	0.0033837199999999998	0.0608959	0.0328791
chr3	13024994	13025094	1689386	0	-	0.45	(0.419,0.45]	chr3	176542	25	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.4831	5.807405	6.13171	0.0345118	0.00115219	0.126025	0.0157112
chr1	43564206	43564305	107081	0	+	0.636364	(0.58,1]	chr1	13192	99	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	175	2	4.61399	5.807055	7.00012	6.58123e-4	2.64819e-4	0.0150669	0.00556151
chr22	25085888	25085988	7699892	0	+	0.45	(0.419,0.45]	chr22	805908	151	INTRON	INTRON	KIAA1671	ENSG00000197077.14	ENST00000358431.8:ENST00000406486.8:ENST00000494730.2:ENST00000401395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	92	2	5.27868	5.80705	6.33542	0.0457732	6.85495e-4	0.142336	0.0108846
chr19	538145	538245	7184060	0	+	0.52	(0.485,0.523]	chr19	730433	6	INTRON	INTRON	CDC34	ENSG00000099804.9	ENST00000215574.9:ENST00000586283.6:ENST00000607527.5:ENST00000606065.3:ENST00000606400.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	230	2	4.60646	5.80703	7.0076	0.00293918	5.00839e-5	0.0344312	0.00164756
chr11	87144650	87144750	4911453	0	+	0.37	(0.36,0.39]	chr11	474124	529	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000529023.5:ENST00000526733.5:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5:ENST00000531800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	88	2	5.69574	5.80701	5.91828	0.0158902	0.00299965	0.0859576	0.030427
chr5	14151466	14151566	2383431	0	+	0.33	(0.29,0.33]	chr5	238468	72	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000502816.1:ENST00000505971.5:ENST00000512070.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	110	2	4.65868	5.80696	6.95524	0.0735584	6.43282e-5	0.17026	0.00197147
chr1	228143427	228143527	358018	0	+	0.45	(0.419,0.45]	chr1	40401	12	INTRON	INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	89	2	5.64904	5.806895000000001	5.96475	0.0169309	0.00368884	0.088829	0.0348088
chr14	54789838	54789937	5821695	0	+	0.50505	(0.485,0.523]	chr14	569165	10	UTR3	UTR3:EXON_MRNA	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.73251	5.80683	5.88115	0.012541	0.00184599	0.0761905	0.0217471
chr19	34390095	34390195	7243251	0	+	0.48	(0.45,0.485]	chr19	741718	81	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	94	2	5.28846	5.806794999999999	6.32513	0.00666704	0.00612862	0.0540577	0.0489549
chr7	7778138	7778238	3317312	0	+	0.44	(0.419,0.45]	chr7	321721	53	INTRON	INTRON	UMAD1	ENSG00000219545.12	ENST00000682710.1:ENST00000463725.5:ENST00000638342.1:ENST00000636849.1:ENST00000639343.1:ENST00000639110.1:ENST00000482067.3:ENST00000406829.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	98	2	5.20508	5.806475	6.40787	0.00979452	0.00835435	0.0664239	0.0613588
chr16	67084734	67084833	6470466	0	+	0.484848	(0.45,0.485]	chr16	642213	20	INTRON	INTRON	CBFB	ENSG00000067955.15	ENST00000651988.1:ENST00000652360.1:ENST00000561924.6:ENST00000290858.11:ENST00000412916.7:ENST00000650873.1:ENST00000563939.3:ENST00000565389.1:ENST00000652116.1:ENST00000566281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	87	2	5.50422	5.80642	6.10862	0.0257993	8.0459e-4	0.109555	0.012189
chr2	239372001	239372101	1392432	0	-	0.67	(0.58,1]	chr2	148759	187	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	83	2	5.51813	5.806315	6.0945	0.013519	3.47472e-4	0.0792526	0.00673552
chr1	168965536	168965636	611011	0	-	0.35	(0.33,0.36]	chr1	72618	572	INTRON	INTRON	LINC00970	ENSG00000203601.3	ENST00000366408.3	lncRNA	lncRNA	lncRNA	lncRNA	0	89	2	5.54909	5.806285	6.06348	0.0108257	0.00379428	0.0707085	0.0355124
chr7	158916871	158916969	3523158	0	+	0.408163	(0.39,0.419]	chr7	340293	22	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	202	2	4.3877	5.806075	7.22445	0.00171592	0.00109743	0.025659	0.0151321
chr22	50710717	50710816	7755292	0	+	0.40404	(0.39,0.419]	chr22	812777	42	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	88	2	5.69518	5.80605	5.91692	0.0162442	0.00302238	0.0873195	0.0305643
chr3	48051096	48051196	1765576	0	-	0.54	(0.523,0.58]	chr3	182011	348	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	1	187	2	4.62899	5.80597	6.98295	0.00168728	3.98321e-4	0.0254298	0.00743377
chr2	199416998	199417098	1353506	0	-	0.46	(0.45,0.485]	chr2	143753	188	INTRON	INTRON	SATB2	ENSG00000119042.17	ENST00000614512.4:ENST00000417098.6:ENST00000260926.9:ENST00000443023.5:ENST00000428695.5:ENST00000457245.5:ENST00000484124.1:ENST00000440919.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	87	2	5.68155	5.8059449999999995	5.93034	0.0130794	0.00241241	0.0782396	0.0261086
chr14	103106999	103107080	5921890	0	+	0.666667	(0.58,1]	chr14	579226	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	83	2	5.71628	5.805845	5.89541	0.0066708	0.00104668	0.0540577	0.0146403
chr3	52444412	52444512	1778655	0	-	0.61	(0.58,1]	chr3	185047	1	SS5_PROX	SS5_PROX:INTRON	SEMA3G	ENSG00000010319.7	ENST00000231721.7:ENST00000465657.1:ENST00000475739.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	111	2	4.74346	5.8057	6.86794	0.0121457	8.82366e-4	0.0754623	0.0176886
chr13	113215460	113215560	5657362	0	+	0.52	(0.485,0.523]	chr13	555523	50	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000488558.2:ENST00000375440.9:ENST00000474116.5:ENST00000494985.5:ENST00000463426.5:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	188	2	4.60039	5.80552	7.01065	0.00158449	4.46264e-4	0.0245893	0.00807719
chr17	44065676	44065771	6910575	0	-	0.473684	(0.45,0.485]	chr17	703401	14	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.71659	5.80551	5.89443	0.018513	0.00141013	0.0928429	0.0180659
chr13	113040347	113040441	5656034	0	+	0.56383	(0.523,0.58]	chr13	555164	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000480321.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	88	2	5.53665	5.805325	6.074	0.00906277	0.00291382	0.0637469	0.0298557
chr1	22502741	22502841	59916	0	+	0.3	(0.29,0.33]	chr1	6195	3	SS5_PROX	SS5_PROX:INTRON	ZBTB40	ENSG00000184677.18	ENST00000650433.1:ENST00000404138.5:ENST00000374651.8:ENST00000375647.5:ENST00000400239.6	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.35847	5.8053	6.25213	0.0269557	4.92548e-4	0.112113	0.00865377
chr16	57768431	57768526	6597100	0	-	0.452632	(0.45,0.485]	chr16	659685	11	INTRON	INTRON	KIFC3	ENSG00000140859.16	ENST00000379655.8:ENST00000445690.7:ENST00000465878.6:ENST00000421376.6:ENST00000541240.5:ENST00000540079.6:ENST00000543930.5:ENST00000562903.5:ENST00000564136.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	86	2	5.6833	5.805175	5.92705	0.0195193	0.00129636	0.0955413	0.0170746
chr18	80177862	80177961	7183057	0	-	0.454545	(0.45,0.485]	chr18	730359	169	INTRON	INTRON	PARD6G	ENSG00000178184.16	ENST00000353265.8	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.6833	5.805175	5.92705	0.0195193	0.00129636	0.0955413	0.0170746
chr11	70776358	70776458	5062045	0	-	0.51	(0.485,0.523]	chr11	492701	585	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	194	2	4.37429	5.804795	7.2353	0.00101791	8.506e-4	0.0191524	0.0126678
chr21	35942360	35942460	7666387	0	-	0.42	(0.419,0.45]	chr21	801118	775	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000475045.6	protein_coding	protein_coding	protein_coding	protein_coding	0	115	2	4.78575	5.80471	6.82367	0.0224633	0.00414811	0.108193	0.0416765
chr19	8248133	8248233	7200365	0	+	0.4	(0.39,0.419]	chr19	734198	63	INTRON	INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	275	2	3.88573	5.80458	7.72343	0.00126463	6.7492e-4	0.0167725	0.0153083
chr1	120742239	120742339	224973	0	+	0.31	(0.29,0.33]	chr1	24861	176	INTRON	INTRON	NBPF26	ENSG00000273136.8	ENST00000620612.5:ENST00000652763.1	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.52772	5.8045100000000005	6.0813	0.00801413	0.00324812	0.0598161	0.0319647
chr1	114414002	114414102	565655	0	-	0.39	(0.36,0.39]	chr1	64937	33	INTRON	INTRON	TRIM33	ENSG00000197323.12	ENST00000358465.7:ENST00000369543.6:ENST00000448034.5	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.70457	5.80401	5.90345	0.022152	0.00181603	0.101784	0.0215865
chr16	81624894	81624994	6509546	0	+	0.47	(0.45,0.485]	chr16	645926	28	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.78096	5.80393	5.8269	0.0166968	0.00167585	0.0884836	0.0203806
chr1	17674684	17674784	54958	0	+	0.33	(0.29,0.33]	chr1	5603	97	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	86	2	5.51972	5.803755000000001	6.08779	0.0208628	7.71544e-4	0.0991037	0.0118336
chr1	25357449	25357546	65244	0	+	0.505155	(0.485,0.523]	chr1	6995	2	INTRON	INTRON	TMEM50A	ENSG00000183726.11	ENST00000498135.5:ENST00000491936.5:ENST00000480937.5:ENST00000374358.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	88	2	5.53308	5.803755000000001	6.07443	0.00899749	0.00304306	0.0637469	0.0306636
chr12	100231186	100231286	5304003	0	+	0.52	(0.485,0.523]	chr12	516411	69	INTRON	INTRON	ACTR6	ENSG00000075089.10	ENST00000553038.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	88	2	5.53308	5.803755000000001	6.07443	0.00899749	0.00304306	0.0637469	0.0306636
chr11	112255278	112255378	4942417	0	+	0.36	(0.33,0.36]	chr11	476600	174	INTRON	INTRON	PTS	ENSG00000150787.8	ENST00000531673.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	87	2	5.53966	5.8032699999999995	6.06688	0.0251076	0.00105663	0.107672	0.0147548
chr1	31578688	31578703	81031	0	+	0.333333	(0.33,0.36]	chr1	9280	1	INTRON	INTRON	LINC01226:TINAGL1	ENSG00000284543.1:ENSG00000142910.16	ENST00000639839.1:ENST00000640226.1:ENST00000457433.6:ENST00000271064.12:ENST00000461030.5:ENST00000478398.5:ENST00000481165.5:ENST00000537531.2:ENST00000468635.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	109	2	4.8729	5.80317	6.73344	0.0164782	0.00333555	0.091341	0.0368376
chr19	11577944	11578043	7208005	0	+	0.515152	(0.485,0.523]	chr19	735780	22	INTRON	INTRON	ZNF627	ENSG00000198551.10	ENST00000593279.5:ENST00000585493.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	86	2	5.5129	5.803045	6.09319	0.0229047	7.11715e-4	0.102982	0.0112082
chr9	93662706	93662806	4184525	0	+	0.49	(0.485,0.523]	chr9	397768	4	SS3_PROX	SS3_PROX:INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.5129	5.803045	6.09319	0.0229047	7.11715e-4	0.102982	0.0112082
chr13	112912617	112912716	5654742	0	+	0.262626	[0,0.29]	chr13	555099	21	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000442625.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	88	2	5.41828	5.802875	6.18747	0.00413423	0.00336232	0.0415963	0.0328612
chr4	119213643	119213718	2114300	0	+	0.2	[0,0.29]	chr4	214906	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	USP53	ENSG00000145390.12	ENST00000514665.1:ENST00000692078.1:ENST00000450251.6:ENST00000274030.11:ENST00000507597.5:ENST00000514305.5:ENST00000688980.1:ENST00000510737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	88	2	5.41828	5.802875	6.18747	0.00413423	0.00336232	0.0415963	0.0328612
chr7	98343260	98343359	3648634	0	-	0.585859	(0.58,1]	chr7	351245	226	INTRON	INTRON	BAIAP2L1	ENSG00000006453.14	ENST00000005260.9:ENST00000462558.5:ENST00000473569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	87	2	5.41094	5.80257	6.1942	0.00368616	0.00240622	0.0389784	0.0261006
chr16	20613109	20613209	6415587	0	+	0.59	(0.58,1]	chr16	634377	24	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5	protein_coding	protein_coding	protein_coding	protein_coding	0	132	2	4.3962	5.8025	7.2088	0.0250928	4.11273e-4	0.114418	0.0116246
chr18	48602737	48602837	7057292	0	+	0.41	(0.39,0.419]	chr18	720287	620	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.66992	5.80234	5.93476	0.0237738	0.00169249	0.105296	0.0204799
chr1	1031816	1031916	1033	0	+	0.66	(0.58,1]	chr1	166	90	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.59324	5.802289999999999	6.01134	0.00531709	0.0014734	0.047841	0.0185589
chr15	34408235	34408334	6217540	0	-	0.454545	(0.45,0.485]	chr15	612287	1	INTRON	INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000569781.1:ENST00000565885.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	86	2	5.79191	5.802004999999999	5.8121	0.0158765	0.00183113	0.0859576	0.0216571
chr5	139654661	139654761	2549707	0	+	0.48	(0.45,0.485]	chr5	253168	31	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.79191	5.802004999999999	5.8121	0.0158765	0.00183113	0.0859576	0.0216571
chr17	12076692	12076791	6680437	0	+	0.40404	(0.39,0.419]	chr17	670598	65	INTRON	INTRON	MAP2K4	ENSG00000065559.15	ENST00000582183.5:ENST00000415385.7:ENST00000602305.5:ENST00000602375.5:ENST00000602811.5:ENST00000353533.10:ENST00000602537.5:ENST00000602686.5:ENST00000538465.7:ENST00000582897.5:ENST00000581941.5:ENST00000579089.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	88	2	5.49088	5.8017199999999995	6.11256	0.0309972	0.00108325	0.119758	0.0149525
chr17	47944215	47944315	6748752	0	+	0.54	(0.523,0.58]	chr17	679903	2	SS3_PROX	SS3_PROX:INTRON	PNPO	ENSG00000108439.11	ENST00000583599.6:ENST00000641709.1:ENST00000641323.1:ENST00000225573.5:ENST00000642017.2:ENST00000434554.7:ENST00000641856.1:ENST00000582171.6:ENST00000641305.1:ENST00000585320.5:ENST00000584061.6:ENST00000583245.6:ENST00000641511.1:ENST00000641703.1:ENST00000641427.1:ENST00000641285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	85	2	5.69157	5.80142	5.91127	0.0172851	0.00111349	0.0897247	0.0152496
chr16	85374742	85374842	6516818	0	+	0.66	(0.58,1]	chr16	646391	154	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.02314	5.801304999999999	6.57947	0.00638322	0.00165065	0.0501889	0.0250898
chr16	85385937	85386037	6516930	0	+	0.7	(0.58,1]	chr16	646391	266	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	98	2	5.02314	5.801304999999999	6.57947	0.00638322	0.00165065	0.0501889	0.0250898
chr20	38751630	38751730	7477129	0	+	0.44	(0.419,0.45]	chr20	778633	1	SS3_PROX	SS3_PROX:INTRON	ACTR5	ENSG00000101442.10	ENST00000243903.6	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.61031	5.801055	5.9918	0.0162379	0.004032	0.0873195	0.0371291
chr2	62997465	62997565	816901	0	+	0.26	[0,0.29]	chr2	92205	3	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000496857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	605	2	5.70917	5.800895000000001	5.89262	1.53637e-4	1.21914e-6	0.00690691	1.1904e-4
chr7	1848954	1849054	3528711	0	-	0.57	(0.523,0.58]	chr7	340944	194	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000481633.1:ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000450235.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	87	2	5.39327	5.800835	6.2084	0.0277354	4.95211e-4	0.112851	0.00865935
chr2	239269486	239269586	1391403	0	-	0.53	(0.523,0.58]	chr2	148740	179	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	85	2	5.65749	5.8006899999999995	5.94389	0.0182707	0.0010207	0.0921579	0.0143498
chr7	66366537	66366637	3381170	0	+	0.47	(0.45,0.485]	chr7	326271	62	INTRON	INTRON	TPST1	ENSG00000169902.15	ENST00000490159.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	111	2	4.81772	5.800649999999999	6.78358	0.0167663	0.00291315	0.0917029	0.0342042
chr2	55023588	55023688	1148263	0	-	0.43	(0.419,0.45]	chr2	125466	92	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.36395	5.800555	6.23716	0.0407485	8.82327e-4	0.135868	0.0129974
chr5	1326632	1326730	2609081	0	-	0.561224	(0.523,0.58]	chr5	259719	3	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	230	2	4.00257	5.80008	7.59759	0.0092178	7.31734e-6	0.0644666	4.11658e-4
chr10	28678572	28678671	4470349	0	+	0.434343	(0.419,0.45]	chr10	427720	2	INTRON	INTRON	BAMBI	ENSG00000095739.11	ENST00000497699.1:ENST00000375533.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	198	2	4.74668	5.800075	6.85347	0.00394037	4.51322e-4	0.0406053	0.00816346
chr19	16131811	16131911	7216457	0	+	0.5	(0.485,0.523]	chr19	737378	2	SS3_PROX	SS3_PROX:INTRON	RAB8A	ENSG00000167461.12	ENST00000300935.8:ENST00000586682.1:ENST00000592971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	201	2	4.20112	5.800065	7.39901	0.00137422	7.33641e-4	0.0177822	0.0159757
chr2	46987771	46987870	787700	0	+	0.535354	(0.523,0.58]	chr2	89990	85	INTRON	INTRON	TTC7A	ENSG00000068724.17	ENST00000409245.5:ENST00000319190.11:ENST00000461601.5:ENST00000394850.6:ENST00000441914.5:ENST00000409825.5:ENST00000474321.6:ENST00000491786.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	90	2	5.40225	5.799995	6.19774	0.0072907	0.00404292	0.0567247	0.0371291
chr19	46977292	46977392	7275346	0	+	0.5	(0.485,0.523]	chr19	747275	395	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	85	2	5.692	5.7998449999999995	5.90769	0.0171772	0.0011708	0.0895975	0.0157899
chr10	74468865	74468965	4514868	0	+	0.3	(0.29,0.33]	chr10	431960	699	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	85	2	5.66475	5.799835	5.93492	0.0164475	0.00115909	0.0877632	0.0157704
chr6	144332316	144332416	3020332	0	+	0.39	(0.36,0.39]	chr6	295143	9	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1:ENST00000628146.2	protein_coding	protein_coding	protein_coding	protein_coding	4	365	2	4.06473	5.7995149999999995	7.5343	9.32526e-4	2.74295e-4	0.0182629	0.00570133
chr12	132953152	132953252	5542063	0	-	0.6	(0.58,1]	chr12	547064	45	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	82	2	5.76934	5.7994900000000005	5.82964	0.00849371	7.58111e-4	0.0617717	0.0117078
chr17	80274102	80274201	6807305	0	+	0.59596	(0.58,1]	chr17	687364	3	INTRON	INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000319921.4	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.76934	5.7994900000000005	5.82964	0.00849371	7.58111e-4	0.0617717	0.0117078
chr15	74579784	74579883	6151713	0	+	0.565657	(0.523,0.58]	chr15	605014	49	INTRON	INTRON	ARID3B	ENSG00000179361.18	ENST00000622429.1:ENST00000346246.10:ENST00000566147.1	protein_coding	protein_coding	protein_coding	protein_coding	0	91	2	5.35452	5.7994699999999995	6.24442	0.00670944	0.00453096	0.0541591	0.0400651
chr6	15264158	15264258	2856688	0	+	0.48	(0.45,0.485]	chr6	279178	148	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.75605	5.799315	5.84258	0.0151085	0.002004	0.0841543	0.0230381
chr9	112433336	112433436	4219783	0	+	0.46	(0.45,0.485]	chr9	400265	140	INTRON	INTRON	HSDL2	ENSG00000119471.15	ENST00000398803.1:ENST00000488101.5:ENST00000398805.8:ENST00000467434.5:ENST00000480881.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	86	2	5.75605	5.799315	5.84258	0.0151085	0.002004	0.0841543	0.0230381
chr7	2279303	2279403	3532969	0	-	0.57	(0.523,0.58]	chr7	341203	6	INTRON	INTRON	SNX8	ENSG00000106266.11	ENST00000222990.8:ENST00000435060.5:ENST00000457286.5:ENST00000435336.5:ENST00000494722.1:ENST00000447136.1:ENST00000419693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	85	2	5.62258	5.799189999999999	5.9758	0.0193313	9.36996e-4	0.0954446	0.0135546
chr7	65899931	65900031	3378326	0	+	0.49	(0.485,0.523]	chr7	326095	260	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	0	85	2	5.65791	5.799110000000001	5.94031	0.0181582	0.00107389	0.0921579	0.0148869
chr18	77033576	77033676	7180650	0	-	0.47	(0.45,0.485]	chr18	730157	159	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000580402.5:ENST00000580473.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000495162.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	98	2	5.12938	5.799105	6.46883	0.00873194	0.00516809	0.0612699	0.0472296
chr1	21882387	21882484	421989	0	-	0.505155	(0.485,0.523]	chr1	49588	5	INTRON	INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	0	85	2	5.75784	5.79899	5.84014	0.0154142	0.00139792	0.0849828	0.0179863
chr3	4382284	4382384	1676975	0	-	0.35	(0.33,0.36]	chr3	175323	55	INTRON	INTRON	SUMF1	ENSG00000144455.14	ENST00000448413.5:ENST00000272902.10:ENST00000383843.9:ENST00000458465.6:ENST00000405420.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	89	2	5.34082	5.798825	6.25683	0.0338211	6.42061e-4	0.124319	0.0104165
chr8	629337	629437	3932013	0	-	0.59	(0.58,1]	chr8	376005	17	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	172	2	4.94491	5.79881	6.65271	0.00141059	9.06847e-5	0.0229261	0.00254217
chr7	76997622	76997722	3398776	0	+	0.63	(0.58,1]	chr7	328286	69	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	85	2	5.50497	5.7987649999999995	6.09256	0.00452436	0.00187297	0.0436138	0.0219434
chr17	77486823	77486923	6805250	0	+	0.56	(0.523,0.58]	chr17	686821	28	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	185	2	4.83722	5.798695	6.76017	0.00258949	2.14954e-4	0.0321874	0.00476765
chr3	5211561	5211638	1399251	0	+	0.480519	(0.45,0.485]	chr3	149906	3	SS5_PROX	SS5_PROX:INTRON	EDEM1	ENSG00000134109.11	ENST00000256497.9	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.43172	5.798615	6.16551	0.00879664	0.00440365	0.0630845	0.0393688
chr20	35552275	35552375	7464559	0	+	0.51	(0.485,0.523]	chr20	777291	26	INTRON	INTRON	ERGIC3	ENSG00000125991.21	ENST00000357394.8:ENST00000348547.7:ENST00000416206.5:ENST00000413587.5:ENST00000496172.5:ENST00000482338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	87	2	5.57523	5.798515	6.0218	0.00985907	0.00274261	0.0670775	0.028553
chr12	26513755	26513855	5398361	0	-	0.47	(0.45,0.485]	chr12	528527	181	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	1	200	2	4.26942	5.798170000000001	7.32692	0.00125147	0.00103756	0.019365	0.0166412
chr17	72559120	72559220	6963902	0	-	0.59	(0.58,1]	chr17	710389	247	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	2	242	2	4.92543	5.797945	6.67046	0.00135763	2.01267e-5	0.0224546	8.45052e-4
chr10	5648272	5648370	4622424	0	-	0.602041	(0.58,1]	chr10	441815	54	INTRON	INTRON	ASB13	ENSG00000196372.13	ENST00000357700.11:ENST00000479033.1:ENST00000459912.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	82	2	5.59447	5.79763	6.00079	0.0117666	4.59827e-4	0.0737098	0.00821903
chr21	43959533	43959633	7625379	0	+	0.66	(0.58,1]	chr21	796926	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000448845.1:ENST00000422850.5:ENST00000546158.1	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.59447	5.79763	6.00079	0.0117666	4.59827e-4	0.0737098	0.00821903
chr19	41377206	41377266	7263508	0	+	0.566667	(0.523,0.58]	chr19	745096	2	SS5_PROX	SS5_PROX:INTRON	TMEM91	ENSG00000142046.15	ENST00000539627.5:ENST00000604123.5:ENST00000413014.6:ENST00000392002.7:ENST00000436170.6:ENST00000447302.6:ENST00000544232.5:ENST00000542945.5:ENST00000537354.5	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.30515	5.79739	6.28963	0.00618741	0.00509102	0.0519442	0.0433513
chr7	217358	217458	3305828	0	+	0.6	(0.58,1]	chr7	320161	80	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.79283	5.797365	5.8019	0.007984	8.4246e-4	0.0596361	0.0125912
chrX	2393772	2393872	7967782	0	-	0.64	(0.58,1]	chrX	834361	9	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	82	2	5.79283	5.797365	5.8019	0.007984	8.4246e-4	0.0596361	0.0125912
chr8	726061	726160	3932991	0	-	0.565657	(0.523,0.58]	chr8	376060	97	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	185	2	4.86674	5.797215	6.72769	0.00275419	1.96709e-4	0.0332418	0.00447406
chr1	112617706	112617806	562925	0	-	0.36	(0.33,0.36]	chr1	64565	3	SS5_PROX	SS5_PROX:INTRON	ST7L	ENSG00000007341.19	ENST00000358039.9:ENST00000490715.5:ENST00000360743.8:ENST00000361846.7:ENST00000480988.5:ENST00000369669.5:ENST00000490067.5:ENST00000343210.11:ENST00000369666.5:ENST00000497457.5:ENST00000463235.5:ENST00000497235.5:ENST00000369664.1:ENST00000479436.5:ENST00000459630.5:ENST00000470519.5:ENST00000477332.5:ENST00000473206.5:ENST00000498383.5:ENST00000470683.1:ENST00000467335.5:ENST00000492274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	233	2	4.49507	5.79716	7.09925	0.00417085	6.04067e-5	0.0418861	0.00187976
chr19	51362192	51362292	7399213	0	-	0.33	(0.29,0.33]	chr19	769745	4	SS3_PROX	SS3_PROX:INTRON	ETFB:ENSG00000268520	ENSG00000105379.10:ENSG00000268520.1	ENST00000309244.9:ENST00000596253.1:ENST00000593992.1:ENST00000595500.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	1	204	2	4.13733	5.796985	7.45664	0.00169244	5.54648e-4	0.0204799	0.0137234
chr11	112254080	112254179	4942405	0	+	0.363636	(0.36,0.39]	chr11	476600	162	INTRON	INTRON	PTS	ENSG00000150787.8	ENST00000531673.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	88	2	5.61929	5.796620000000001	5.97395	0.0145438	0.00359045	0.0823572	0.0342681
chr19	44947112	44947202	7269163	0	+	0.455556	(0.45,0.485]	chr19	746444	7	INTRON	INTRON	APOC4-APOC2:APOC2	ENSG00000224916.9:ENSG00000234906.11	ENST00000585685.5:ENST00000589057.5:ENST00000592257.5:ENST00000252490.7:ENST00000591597.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	89	2	5.47648	5.796469999999999	6.11646	0.00956667	0.0039628	0.0658012	0.0368027
chr22	32803121	32803221	7717640	0	+	0.68	(0.58,1]	chr22	807776	6	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	2	282	2	3.46351	5.7962	8.12889	0.0022345	4.75643e-5	0.024843	0.00379612
chr7	47473509	47473609	3588543	0	-	0.47	(0.45,0.485]	chr7	346123	204	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	230	2	4.15165	5.7961849999999995	7.44072	0.00763899	1.68609e-5	0.0582002	7.44404e-4
chr7	112204001	112204101	3692548	0	-	0.47	(0.45,0.485]	chr7	354969	1995	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	189	2	4.85626	5.79596	6.73566	0.00318291	2.39218e-4	0.0360488	0.00515602
chr18	77091802	77091901	7181235	0	-	0.464646	(0.45,0.485]	chr18	730167	43	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000580402.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1:ENST00000583798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	93	2	5.28846	5.79592	6.30338	0.00692617	0.00612862	0.0553898	0.0489549
chr5	139652265	139652364	2549683	0	+	0.474747	(0.45,0.485]	chr5	253168	7	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.71928	5.7958549999999995	5.87243	0.0143887	0.00219685	0.0821732	0.0245167
chr14	59244646	59244746	5830435	0	+	0.41	(0.39,0.419]	chr14	570362	555	INTRON	INTRON	DAAM1	ENSG00000100592.16	ENST00000556596.1:ENST00000360909.8:ENST00000556135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	89	2	5.37172	5.79585	6.21998	0.0367885	8.22163e-4	0.129052	0.0124043
chr19	2337702	2337780	7189502	0	+	0.589744	(0.58,1]	chr19	731792	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1:ENST00000593243.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	83	2	5.43752	5.795640000000001	6.15376	0.0156166	2.90409e-4	0.0849828	0.0059241
chr16	89221906	89221991	6523481	0	+	0.482353	(0.45,0.485]	chr16	647075	4	SS3_PROX	SS3_PROX:INTRON	ZNF778	ENSG00000170100.14	ENST00000433976.7:ENST00000620195.4:ENST00000564906.5:ENST00000567651.5:ENST00000306502.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	87	2	5.42587	5.795135	6.1644	0.0290571	6.92954e-4	0.116079	0.0109657
chr15	67102423	67102522	6139442	0	+	0.414141	(0.39,0.419]	chr15	603944	30	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1:ENST00000559092.1:ENST00000560175.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	89	2	5.53798	5.795115	6.05225	0.0130948	0.0043589	0.0782739	0.0391245
chr11	64271020	64271112	5049348	0	-	0.521739	(0.485,0.523]	chr11	490331	3	INTRON	INTRON	BAD	ENSG00000002330.14	ENST00000309032.8:ENST00000394532.7:ENST00000544785.1:ENST00000394531.3:ENST00000493798.1:ENST00000492141.1	protein_coding	protein_coding	protein_coding	protein_coding	0	85	2	5.76929	5.79505	5.82081	0.0138807	0.00167976	0.0804838	0.0203806
chr10	124757044	124757143	4779803	0	-	0.434343	(0.419,0.45]	chr10	456999	9	UTR3	UTR3:EXON_MRNA:INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000495711.2:ENST00000652548.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	87	2	5.6954	5.79492	5.89444	0.0254103	0.00206691	0.108573	0.0235758
chr8	124660914	124661014	4064266	0	-	0.53	(0.523,0.58]	chr8	387128	416	INTRON	INTRON	MTSS1	ENSG00000170873.19	ENST00000518547.6:ENST00000378017.7:ENST00000325064.9:ENST00000522162.1:ENST00000529463.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	228	2	4.59372	5.794735	6.99575	0.0030293299999999998	4.88649e-5	0.0350226	0.00161739
chr13	33181287	33181387	5684408	0	-	0.29	[0,0.29]	chr13	558186	133	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000399365.7:ENST00000255486.8:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	83	2	5.72933	5.794595	5.85986	0.00996568	0.00106877	0.0673647	0.0148869
chr19	48908764	48908863	7280433	0	+	0.616162	(0.58,1]	chr19	748048	25	INTRON	INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000424608.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	82	2	5.75506	5.794405	5.83375	0.00751249	9.38062e-4	0.0576451	0.0135546
chr12	132529682	132529782	5352912	0	+	0.7	(0.58,1]	chr12	523670	13	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.54978	5.7943549999999995	6.03893	0.00503456	0.00165911	0.0464858	0.0202545
chr21	43604173	43604272	7677112	0	-	0.535354	(0.523,0.58]	chr21	802562	115	INTRON	INTRON	HSF2BP	ENSG00000160207.9	ENST00000291560.7	protein_coding	protein_coding	protein_coding	protein_coding	0	85	2	5.55012	5.793839999999999	6.03756	0.0217068	7.92905e-4	0.100615	0.0120621
chr6	11232403	11232503	3093689	0	-	0.5	(0.485,0.523]	chr6	300439	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NEDD9	ENSG00000111859.17	ENST00000379446.10:ENST00000620854.4:ENST00000448183.6:ENST00000504387.5:ENST00000379433.5:ENST00000513989.5:ENST00000397378.7:ENST00000508546.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	212	2	4.00429	5.79356	7.58283	0.00233191	5.05626e-4	0.0257012	0.0130427
chr21	15827703	15827799	7592100	0	+	0.489583	(0.485,0.523]	chr21	793797	1	INTRON	INTRON	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9:ENST00000453553.1	protein_coding	protein_coding	protein_coding	protein_coding	1	225	2	4.47504	5.7932749999999995	7.11151	0.00379011	3.63944e-5	0.0396388	0.00129856
chr17	17773035	17773135	6689766	0	+	0.53	(0.523,0.58]	chr17	671344	485	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.61976	5.7932500000000005	5.96674	0.0109075	0.00236826	0.0707085	0.0259199
chr9	129498338	129498401	4250759	0	+	0.634921	(0.58,1]	chr9	404723	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	204	2	4.26426	5.793185	7.32211	0.00360545	6.27279e-6	0.0385302	3.69646e-4
chr19	8249329	8249429	7200377	0	+	0.63	(0.58,1]	chr19	734198	75	INTRON	INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	209	2	4.73288	5.7929949999999995	6.85311	0.00130198	3.10807e-5	0.0220198	0.00115612
chr8	133268318	133268418	4084002	0	-	0.6	(0.58,1]	chr8	388324	8	INTRON	INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000517745.2:ENST00000676005.1:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674536.1:ENST00000675357.1:ENST00000675600.1:ENST00000674902.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	138	2	4.29454	5.79297	7.2914	0.0305531	3.40674e-4	0.126768	0.010549
chr2	27481260	27481360	1112873	0	-	0.46	(0.45,0.485]	chr2	121776	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	IFT172	ENSG00000138002.16	ENST00000675690.1:ENST00000260570.8:ENST00000507184.5:ENST00000675410.1:ENST00000674932.1:ENST00000676119.1:ENST00000674824.1:ENST00000674701.1:ENST00000675963.1:ENST00000675618.1:ENST00000675729.1:ENST00000511842.5:ENST00000359466.10:ENST00000416524.2:ENST00000675728.1:ENST00000676300.1:ENST00000476264.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	88	2	5.51989	5.79279	6.06569	0.0104281	0.00357389	0.0687558	0.0342681
chr7	96976259	96976359	3646052	0	-	0.39	(0.36,0.39]	chr7	350894	68	INTRON	INTRON	DLX6-AS1	ENSG00000231764.11	ENST00000430027.3:ENST00000659765.1:ENST00000458352.5:ENST00000656954.1:ENST00000605417.6:ENST00000654988.1:ENST00000658043.1:ENST00000452769.4:ENST00000437331.4:ENST00000430404.7	lncRNA	lncRNA	lncRNA	lncRNA	0	87	2	5.69574	5.79268	5.88962	0.0166261	0.00299965	0.0884836	0.030427
chr17	77216832	77216922	6803144	0	+	0.388889	(0.36,0.39]	chr17	686686	4	UTR3	UTR3:EXON_MRNA	SEC14L1	ENSG00000129657.16	ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	2	261	2	4.33628	5.792425	7.24857	0.00159081	3.63784e-4	0.024604	0.00699922
chr20	32377845	32377944	7455884	0	+	0.565657	(0.523,0.58]	chr20	776143	54	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	201	2	4.16563	5.79235	7.41907	0.00147865	7.11773e-4	0.0186157	0.0157569
chr22	46847877	46847977	7745867	0	+	0.55	(0.523,0.58]	chr22	812199	499	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	87	2	5.53665	5.792285	6.04792	0.00948306	0.00291382	0.0656057	0.0298557
chr10	46805616	46805716	4484739	0	+	0.5	(0.485,0.523]	chr10	428921	33	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000688259.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	85	2	5.55054	5.79225	6.03396	0.0215787	8.35707e-4	0.100612	0.012554
chr17	67116471	67116570	6957421	0	-	0.393939	(0.39,0.419]	chr17	709544	17	INTRON	INTRON	HELZ	ENSG00000198265.12	ENST00000358691.10:ENST00000579953.5:ENST00000580168.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	92	2	5.36155	5.79209	6.22263	0.00991891	0.00648185	0.0671959	0.0503748
chr3	38240449	38240548	1445333	0	+	0.414141	(0.39,0.419]	chr3	154119	31	INTRON	INTRON	OXSR1	ENSG00000172939.9	ENST00000446845.5:ENST00000311806.8:ENST00000467900.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	87	2	5.69518	5.79172	5.88826	0.0169925	0.00302238	0.0889149	0.0305643
chr5	55372842	55372941	2422246	0	+	0.353535	(0.33,0.36]	chr5	241578	56	INTRON	INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	91	2	5.37262	5.791675	6.21073	0.00843224	0.00569729	0.0617623	0.046716
chr11	12814622	12814722	4803048	0	+	0.47	(0.45,0.485]	chr11	460563	498	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.68155	5.79161	5.90167	0.0137135	0.00241241	0.0799457	0.0261086
chr13	112818205	112818304	5653829	0	+	0.646465	(0.58,1]	chr13	554938	16	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000459908.5:ENST00000418678.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	423	2	5.43245	5.79116	6.14987	2.61815e-4	1.34939e-6	0.00916744	1.27965e-4
chr9	131504749	131504831	4258742	0	+	0.5	(0.485,0.523]	chr9	405789	1	SS5_PROX	SS5_PROX:INTRON	POMT1	ENSG00000130714.19	ENST00000372228.9:ENST00000341012.13:ENST00000677216.1:ENST00000676640.1:ENST00000402686.8:ENST00000441334.5:ENST00000677029.1:ENST00000677729.1:ENST00000684579.1:ENST00000678833.1:ENST00000677853.1:ENST00000683392.1:ENST00000678548.1:ENST00000679023.1:ENST00000679111.1:ENST00000676803.1:ENST00000678942.2:ENST00000676915.1:ENST00000677586.1:ENST00000677293.1:ENST00000677626.1:ENST00000678303.1:ENST00000678707.1:ENST00000372220.5:ENST00000676835.1:ENST00000678546.1:ENST00000683229.1:ENST00000683712.1:ENST00000418774.6:ENST00000415075.6:ENST00000430619.2:ENST00000448212.5:ENST00000483472.2:ENST00000404875.7:ENST00000677028.1:ENST00000678366.1:ENST00000677295.2:ENST00000677099.1:ENST00000679221.1:ENST00000678785.1:ENST00000682070.1:ENST00000678739.1:ENST00000678626.1:ENST00000679189.1:ENST00000683615.1:ENST00000677677.1:ENST00000677167.1:ENST00000678264.2:ENST00000682813.1:ENST00000423007.6:ENST00000678768.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	98	2	5.08528	5.791145	6.49701	0.0086528	0.00420849	0.0612699	0.0421454
chr2	239283375	239283475	1391542	0	-	0.66	(0.58,1]	chr2	148740	318	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	82	2	5.51813	5.791035	6.06394	0.013519	3.80904e-4	0.0792526	0.00721291
chr17	29261338	29261438	6877033	0	-	0.33	(0.29,0.33]	chr17	698041	56	UTR3	UTR3:EXON_MRNA	NUFIP2	ENSG00000108256.9	ENST00000225388.9	protein_coding	protein_coding	protein_coding	protein_coding	3	647	2	5.59238	5.791005	5.98963	1.49777e-4	5.12678e-6	0.00681825	3.21808e-4
chr11	65444341	65444441	4871785	0	+	0.55	(0.523,0.58]	chr11	468177	217	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	58	12032	2	5.77561	5.79096	5.80631	1.80287e-5	9.20229e-8	0.00243518	2.22053e-5
chr22	28601654	28601754	7781047	0	-	0.39	(0.36,0.39]	chr22	815741	1587	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	1	239	2	4.01411	5.7905	7.56689	0.0110059	1.86396e-5	0.0708586	8.01857e-4
chr7	47380612	47380712	3587598	0	-	0.47	(0.45,0.485]	chr7	346036	106	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	188	2	4.69118	5.79037	6.88956	0.00239127	3.85858e-4	0.0308863	0.00727473
chr20	31607540	31607640	7453518	0	+	0.48	(0.45,0.485]	chr20	775786	4	PRIMIRNA	PRIMIRNA	MIR3193	ENSG00000264395.1	ENST00000578262.1	miRNA	primary_miRNA	miRNA	primary_miRNA	0	122	2	4.59225	5.790265	6.98828	0.0259502	0.00198597	0.116361	0.0279914
chr8	30517113	30517213	3789499	0	+	0.4	(0.39,0.419]	chr8	364934	123	INTRON	INTRON	RBPMS	ENSG00000157110.16	ENST00000320203.8:ENST00000339877.8:ENST00000287771.9:ENST00000397323.9:ENST00000517860.5:ENST00000520161.5:ENST00000523115.5:ENST00000519647.5:ENST00000520191.5:ENST00000523717.5:ENST00000519359.5:ENST00000522694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	272	2	5.05774	5.790055	6.52237	0.00170745	3.69587e-4	0.025659	0.00704866
chr16	89915340	89915440	6526331	0	+	0.63	(0.58,1]	chr16	647719	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000267048:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000555427.1:ENST00000639847.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	0	88	2	5.11355	5.789675	6.4658	0.0271806	1.09908e-4	0.112113	0.00294443
chr20	63211870	63211969	7585883	0	-	0.474747	(0.45,0.485]	chr20	792947	77	INTRON	INTRON	YTHDF1	ENSG00000149658.18	ENST00000370339.8:ENST00000370334.4	protein_coding	protein_coding	protein_coding	protein_coding	1	188	2	4.67519	5.7896350000000005	6.90408	0.00232708	4.03946e-4	0.0303784	0.00752202
chr10	119776661	119776761	4596648	0	+	0.41	(0.39,0.419]	chr10	439320	162	INTRON	INTRON	INPP5F	ENSG00000198825.15	ENST00000649297.1:ENST00000648621.1:ENST00000650623.2:ENST00000649251.1:ENST00000649742.1:ENST00000647933.1:ENST00000650305.1:ENST00000369081.3:ENST00000648661.1:ENST00000648262.1:ENST00000648515.1:ENST00000649454.1:ENST00000649957.1:ENST00000647699.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	88	2	5.57892	5.789275	5.99963	0.0142473	0.00396694	0.0817691	0.0368027
chr13	28139487	28139587	5555511	0	+	0.6	(0.58,1]	chr13	548207	4	SS5_PROX	SS5_PROX:INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	436	2	5.77412	5.78927	5.80442	1.0823e-4	5.22469e-6	0.00581236	3.2605e-4
chr20	36315002	36315102	7469137	0	+	0.54	(0.523,0.58]	chr20	777805	81	INTRON	INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.21727	5.789205	6.36114	0.0361597	3.21725e-4	0.127853	0.0063695
chr12	2835054	2835153	5156744	0	+	0.676768	(0.58,1]	chr12	501120	38	INTRON	INTRON	ITFG2	ENSG00000111203.13	ENST00000644123.1:ENST00000644517.1:ENST00000645513.1:ENST00000643039.1:ENST00000552005.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	179	2	4.38079	5.7887	7.19661	5.47609e-4	4.22825e-4	0.011772	0.0093303
chr13	113053705	113053801	5656173	0	+	0.59375	(0.58,1]	chr13	555185	11	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	85	2	5.45872	5.788684999999999	6.11865	0.00429384	0.00211999	0.042386	0.0239744
chr3	48559854	48559953	1767735	0	-	0.515152	(0.485,0.523]	chr3	182495	1	INTRON	INTRON	PFKFB4	ENSG00000114268.12	ENST00000452531.5:ENST00000496767.5:ENST00000467176.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	156	2	4.12717	5.788435	7.4497	0.0545434	6.62378e-4	0.167824	0.0151276
chr9	129499550	129499648	4250772	0	+	0.5	(0.485,0.523]	chr9	404726	7	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	85	2	5.5129	5.78839	6.06388	0.0229047	7.70737e-4	0.102982	0.0118331
chr2	3298495	3298594	1081092	0	-	0.454545	(0.45,0.485]	chr2	117633	158	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	87	2	5.38503	5.788265	6.1915	0.0308908	6.44145e-4	0.119556	0.0104271
chr10	131959139	131959238	4616619	0	+	0.59596	(0.58,1]	chr10	441116	33	UTR3	UTR3:EXON_MRNA	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	83	2	5.59324	5.78823	5.98322	0.00562007	0.0014734	0.0493906	0.0185589
chr1	111724518	111724616	561643	0	-	0.510204	(0.485,0.523]	chr1	64439	15	UTR3	UTR3:EXON_MRNA:INTRON	INKA2	ENSG00000197852.12	ENST00000527570.1:ENST00000357260.6:ENST00000534365.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	185	2	4.63485	5.788175	6.9415	0.00181258	4.03769e-4	0.0264638	0.00752123
chr2	43457144	43457244	1133888	0	-	0.46	(0.45,0.485]	chr2	123988	265	INTRON	INTRON	THADA	ENSG00000115970.19	ENST00000405975.7:ENST00000407351.5:ENST00000398653.5:ENST00000405006.8:ENST00000408045.7:ENST00000402796.5:ENST00000485353.5:ENST00000469323.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	85	2	5.64922	5.7881350000000005	5.92705	0.020599	0.00129636	0.0982852	0.0170746
chr2	135626226	135626326	901476	0	+	0.45	(0.419,0.45]	chr2	101580	31	INTRON	INTRON	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000488035.5:ENST00000410054.5:ENST00000628915.2:ENST00000436436.5:ENST00000409606.5:ENST00000456040.1:ENST00000480793.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	89	2	5.36395	5.78773	6.21151	0.0407485	9.41863e-4	0.135868	0.0135546
chr19	56405050	56405148	7294715	0	+	0.5	(0.485,0.523]	chr19	751199	2	INTRON	INTRON	ZNF583	ENSG00000198440.9	ENST00000588635.1:ENST00000291598.11:ENST00000537943.5:ENST00000539211.6:ENST00000333201.13:ENST00000391778.3:ENST00000436972.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	89	2	5.21769	5.78761	6.35753	0.0359739	3.41236e-4	0.127853	0.00667174
chr8	127876222	127876322	3918609	0	+	0.46	(0.45,0.485]	chr8	374193	158	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000521122.2:ENST00000520913.2:ENST00000519481.6:ENST00000651568.1:ENST00000669082.1:ENST00000665166.1:ENST00000656948.1:ENST00000671088.1:ENST00000664924.1:ENST00000670204.1:ENST00000652695.1	lncRNA	lncRNA	lncRNA	lncRNA	0	87	2	5.56203	5.787545	6.01306	0.0113949	0.00322991	0.0723462	0.0319521
chr3	50591582	50591681	1470340	0	+	0.585859	(0.58,1]	chr3	157761	113	UTR3	UTR3:EXON_MRNA	HEMK1	ENSG00000114735.10	ENST00000434410.5:ENST00000232854.9	protein_coding	protein_coding	protein_coding	protein_coding	0	105	2	4.81862	5.787335000000001	6.75605	0.0102696	0.00112759	0.0678072	0.0202727
chr10	126925843	126925943	4607152	0	+	0.55	(0.523,0.58]	chr10	440634	199	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.39327	5.78728	6.18129	0.0277354	5.34061e-4	0.112851	0.0091384
chr16	21601687	21601786	6419194	0	+	0.40404	(0.39,0.419]	chr16	634847	14	INTRON	INTRON	METTL9	ENSG00000197006.15	ENST00000567404.5:ENST00000396014.8:ENST00000358154.8:ENST00000562379.1:ENST00000570074.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	87	2	5.65745	5.787185	5.91692	0.0162442	0.00330348	0.0873195	0.0323993
chr19	41327133	41327233	7381070	0	-	0.48	(0.45,0.485]	chr19	765964	241	INTRON	INTRON	TGFB1	ENSG00000105329.11	ENST00000598758.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	86	2	5.46558	5.787100000000001	6.10862	0.0273644	8.0459e-4	0.112372	0.012189
chr1	96761247	96761346	190745	0	+	0.434343	(0.419,0.45]	chr1	20672	94	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	89	2	5.52959	5.787	6.04441	0.0149622	0.00484244	0.0835955	0.0418176
chr7	65900031	65900131	3378327	0	+	0.48	(0.45,0.485]	chr7	326095	261	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	0	91	2	5.33781	5.78695	6.23609	0.00778782	0.0054758	0.0590114	0.0454065
chr2	233530110	233530209	1385566	0	-	0.272727	[0,0.29]	chr2	148131	2	INTRON	INTRON	USP40	ENSG00000085982.15	ENST00000450966.5:ENST00000251722.10:ENST00000678225.2:ENST00000427112.6:ENST00000485943.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	83	2	5.55013	5.78665	6.02317	0.0137948	6.82173e-4	0.0803169	0.0108717
chr1	112705901	112705989	563029	0	-	0.556818	(0.523,0.58]	chr1	64621	4	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	RHOC	ENSG00000155366.17	ENST00000369633.6:ENST00000369642.7:ENST00000339083.12:ENST00000285735.6:ENST00000468093.5:ENST00000369638.6:ENST00000369637.5:ENST00000369636.6:ENST00000484280.6:ENST00000369632.6:ENST00000425265.6:ENST00000436685.6:ENST00000528831.5:ENST00000484054.3:ENST00000478447.1:ENST00000527563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	88	2	5.44845	5.786615	6.12478	0.00829271	0.00361636	0.0610772	0.0342681
chr4	4458971	4459071	2185182	0	-	0.47	(0.45,0.485]	chr4	221832	2	SS5_PROX	SS5_PROX:INTRON	STX18	ENSG00000168818.10	ENST00000505286.5:ENST00000306200.7:ENST00000503861.5:ENST00000512195.5:ENST00000507908.5:ENST00000512780.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	85	2	5.78096	5.786435	5.79191	0.0166968	0.00183113	0.0884836	0.0216571
chr1	153828448	153828548	591694	0	-	0.38	(0.36,0.39]	chr1	68938	1	SS3_PROX	SS3_PROX:INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000636014.1:ENST00000637331.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	86	2	5.6372	5.786265	5.93533	0.024533	0.00167855	0.106796	0.0203806
chr10	132688691	132688791	4618351	0	+	0.47	(0.45,0.485]	chr10	441157	378	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.1123	5.786245	6.46019	0.0458344	3.07362e-4	0.142336	0.00618726
chr3	149540348	149540431	1940018	0	-	0.421687	(0.419,0.45]	chr3	197470	2	INTRON	INTRON	WWTR1	ENSG00000018408.15	ENST00000465804.5:ENST00000360632.8:ENST00000467467.5:ENST00000471586.5:ENST00000472417.1:ENST00000485244.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	96	2	5.20508	5.786105	6.36713	0.00979452	0.00893106	0.0664239	0.0637469
chr5	857172	857271	2607926	0	-	0.666667	(0.58,1]	chr5	259417	62	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	0	94	2	4.88945	5.78598	6.68251	0.0388928	5.46055e-5	0.131324	0.00175188
chr2	232749482	232749582	1055819	0	+	0.44	(0.419,0.45]	chr2	114811	4	SS5_PROX	SS5_PROX:INTRON	GIGYF2	ENSG00000204120.16	ENST00000629305.2:ENST00000428883.5:ENST00000409480.5:ENST00000456491.5:ENST00000373563.9:ENST00000409547.5:ENST00000430720.5:ENST00000425040.5:ENST00000421433.5:ENST00000423659.5:ENST00000409196.7:ENST00000409451.7:ENST00000463554.5:ENST00000440945.5:ENST00000429187.5:ENST00000424038.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	265	2	4.42581	5.78594	7.14607	0.00236107	3.10774e-4	0.0306624	0.00624322
chr7	47353925	47354024	3587330	0	-	0.393939	(0.39,0.419]	chr7	346030	72	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	269	2	3.91466	5.785845	7.65703	0.00117023	7.65486e-4	0.0163688	0.0157899
chr1	12582458	12582558	402427	0	-	0.42	(0.419,0.45]	chr1	46222	14	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	250	2	4.6727	5.78556	6.89842	0.00388822	1.51593e-4	0.0402027	0.00370696
chr1	17674984	17675084	54961	0	+	0.47	(0.45,0.485]	chr1	5603	100	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	241	2	4.79189	5.785360000000001	6.77883	0.00230807	1.23522e-4	0.0302623	0.00321265
chr2	233151862	233151961	1058138	0	+	0.363636	(0.36,0.39]	chr2	115096	39	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6	protein_coding	protein_coding	protein_coding	protein_coding	1	205	2	5.2148	5.78518	6.35556	0.0077647	1.09223e-4	0.0589564	0.00293076
chr10	100962790	100962888	4569792	0	+	0.428571	(0.419,0.45]	chr10	436222	10	UTR3	UTR3:EXON_MRNA	SLF2	ENSG00000119906.13	ENST00000238961.9:ENST00000649226.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	199	2	4.44849	5.78514	7.12179	0.0024648	0.00100323	0.0313232	0.0142509
chr17	82723685	82723784	6818122	0	+	0.565657	(0.523,0.58]	chr17	689151	4	INTRON	INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5:ENST00000571482.2:ENST00000576363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	85	2	5.65959	5.78478	5.90997	0.012016	0.0021416	0.0743424	0.0240825
chr19	56596127	56596226	7295040	0	+	0.535354	(0.523,0.58]	chr19	751227	3	INTRON	INTRON	ZNF71	ENSG00000197951.10	ENST00000328070.10:ENST00000599599.7:ENST00000594944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	84	2	5.65749	5.7843800000000005	5.91127	0.0182707	0.00111349	0.0921579	0.0152496
chr2	186127310	186127410	1338576	0	-	0.34	(0.33,0.36]	chr2	142311	84	INTRON	INTRON	LINC01473	ENSG00000237877.7	ENST00000658984.1:ENST00000658990.1:ENST00000655126.1:ENST00000667839.1:ENST00000670612.1:ENST00000668985.1:ENST00000661574.1:ENST00000666677.1:ENST00000665629.1:ENST00000671116.1:ENST00000419719.2:ENST00000667056.1:ENST00000671599.1	lncRNA	lncRNA	lncRNA	lncRNA	2	259	2	4.05225	5.78423	7.51621	7.5644e-4	7.31806e-4	0.0162519	0.0114074
chr1	1063301	1063379	1370	0	+	0.589744	(0.58,1]	chr1	311	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000217801	ENSG00000217801.11	ENST00000688131.1:ENST00000456409.6:ENST00000692821.1:ENST00000394517.7:ENST00000427998.6:ENST00000685011.1:ENST00000692266.1:ENST00000412397.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	81	2	5.66698	5.783765	5.90055	0.0102927	6.1741e-4	0.0684871	0.0101143
chr17	76435341	76435441	6976347	0	-	0.32	(0.29,0.33]	chr17	712141	294	INTRON	INTRON	UBE2O	ENSG00000175931.13	ENST00000319380.12:ENST00000586409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	84	2	5.73214	5.783455	5.83477	0.0146933	0.00150459	0.0826843	0.0188758
chr9	122325589	122325688	4233720	0	+	0.444444	(0.419,0.45]	chr9	401888	31	UTR3	UTR3:EXON_MRNA	MRRF	ENSG00000148187.18	ENST00000344641.8	protein_coding	protein_coding	protein_coding	protein_coding	1	254	2	4.75078	5.7832550000000005	6.81573	0.00338329	1.90368e-4	0.0372054	0.0043642
chr14	68898388	68898487	5999323	0	-	0.545455	(0.523,0.58]	chr14	588704	43	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	84	2	5.62258	5.7832349999999995	5.94389	0.0193313	0.0010207	0.0954446	0.0143498
chr5	139654761	139654861	2549708	0	+	0.54	(0.523,0.58]	chr5	253168	32	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.62258	5.7832349999999995	5.94389	0.0193313	0.0010207	0.0954446	0.0143498
chr17	77214994	77215091	6803124	0	+	0.525773	(0.523,0.58]	chr17	686684	11	UTR3	UTR3:EXON_MRNA:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	3	693	2	5.1716	5.78321	6.39482	7.38828e-5	1.76973e-5	0.00480458	7.70598e-4
chr10	76007010	76007110	4526239	0	+	0.49	(0.485,0.523]	chr10	432292	1231	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	84	2	5.692	5.783155000000001	5.87431	0.0171772	0.00127835	0.0895975	0.0168904
chr3	184367100	184367200	1644325	0	+	0.47	(0.45,0.485]	chr3	172774	3	SS5_PROX	SS5_PROX:INTRON	POLR2H	ENSG00000163882.10	ENST00000456318.6:ENST00000438240.5:ENST00000455712.5:ENST00000430783.5:ENST00000443489.5:ENST00000452961.5:ENST00000429568.1:ENST00000488213.5:ENST00000489043.1:ENST00000476003.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	187	2	4.79839	5.783085	6.76778	0.0029996	2.83156e-4	0.0348875	0.00581439
chr16	81543781	81543881	6508731	0	+	0.38	(0.36,0.39]	chr16	645911	479	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.53855	5.7830449999999995	6.02754	0.0133452	0.00432809	0.0789398	0.0389438
chr6	70726780	70726880	2938065	0	+	0.3	(0.29,0.33]	chr6	289077	577	INTRON	INTRON	SMAP1	ENSG00000112305.15	ENST00000370452.7:ENST00000316999.9:ENST00000370455.8:ENST00000619054.4	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.48431	5.782805	6.0813	0.00801413	0.00360762	0.0598161	0.0342681
chr10	15229453	15229553	4637010	0	-	0.47	(0.45,0.485]	chr10	443055	80	INTRON	INTRON	FAM171A1	ENSG00000148468.17	ENST00000378116.9:ENST00000477161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	93	2	5.06138	5.78273	6.50408	0.0492008	2.71658e-4	0.146142	0.00565001
chr1	1306771	1306871	380914	0	-	0.49	(0.485,0.523]	chr1	43019	3	SS5_PROX	SS5_PROX:INTRON	ACAP3	ENSG00000131584.19	ENST00000354700.10:ENST00000472541.5:ENST00000354980.7:ENST00000479108.5:ENST00000438966.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	84	2	5.623	5.781655000000001	5.94031	0.0192139	0.00107389	0.095424900000000007	0.0148869
chr18	76436548	76436648	7179485	0	-	0.51	(0.485,0.523]	chr18	730080	559	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.623	5.781655000000001	5.94031	0.0192139	0.00107389	0.095424900000000007	0.0148869
chr18	6042241	6042340	7110133	0	-	0.474747	(0.45,0.485]	chr18	723828	96	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000400105.6:ENST00000317931.12:ENST00000400104.7	protein_coding	protein_coding	protein_coding	protein_coding	1	233	2	4.63178	5.7815449999999995	6.93131	0.00313511	7.8924e-5	0.0357769	0.0022885
chr1	21651487	21651584	419984	0	-	0.505155	(0.485,0.523]	chr1	49027	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	RAP1GAP	ENSG00000076864.21	ENST00000374765.9:ENST00000471600.6:ENST00000542643.6:ENST00000611549.4:ENST00000495204.5:ENST00000374757.7:ENST00000317967.11:ENST00000447293.5:ENST00000482984.5:ENST00000464457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	84	2	5.75784	5.781495	5.80515	0.0154142	0.00153111	0.0849828	0.0191213
chr6	41723726	41723825	3132631	0	-	0.686869	(0.58,1]	chr6	305485	1	INTRON	INTRON	TFEB	ENSG00000112561.19	ENST00000358871.6:ENST00000373033.6:ENST00000230323.8:ENST00000677531.1:ENST00000403298.9:ENST00000420312.6:ENST00000424495.2:ENST00000678831.1:ENST00000419396.6:ENST00000678871.1:ENST00000394283.5:ENST00000679237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	83	2	5.35214	5.78141	6.21068	0.0181452	2.44053e-4	0.0921579	0.00522003
chr5	176588530	176588630	2596940	0	+	0.48	(0.45,0.485]	chr5	257748	1	SS3_PROX	SS3_PROX:INTRON	CDHR2	ENSG00000074276.11	ENST00000510636.5:ENST00000261944.10:ENST00000506348.1:ENST00000513031.5:ENST00000508085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	85	2	5.54186	5.781275	6.02069	0.0243502	0.00101549	0.106588	0.0143256
chr22	20824714	20824814	7768197	0	-	0.46	(0.45,0.485]	chr22	814638	3	SS3_PROX	SS3_PROX:INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000485963.5:ENST00000449120.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	85	2	5.71928	5.78093	5.84258	0.0151085	0.00219685	0.0841543	0.0245167
chr9	120435485	120435585	4384275	0	-	0.46	(0.45,0.485]	chr9	418299	124	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000479584.2:ENST00000690814.1:ENST00000686842.1:ENST00000691551.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000425647.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	85	2	5.71928	5.78093	5.84258	0.0151085	0.00219685	0.0841543	0.0245167
chr13	112818404	112818504	5653831	0	+	0.41	(0.39,0.419]	chr13	554938	18	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000459908.5:ENST00000418678.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	90	2	5.24182	5.780885	6.31995	0.0441194	6.3352e-4	0.140174	0.0102998
chr14	104891511	104891607	5926141	0	+	0.614583	(0.58,1]	chr14	579999	14	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	1	173	2	4.53348	5.780695	7.02791	6.18479e-4	3.41282e-4	0.0145945	0.00667174
chr22	17104325	17104425	7683236	0	+	0.67	(0.58,1]	chr22	803625	2	SS3_PROX	SS3_PROX:INTRON	IL17RA	ENSG00000177663.15	ENST00000319363.11:ENST00000612619.2:ENST00000694951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	83	2	5.54978	5.7805599999999995	6.01134	0.00531709	0.00165911	0.047841	0.0202545
chr7	47524036	47524136	3589053	0	-	0.62	(0.58,1]	chr7	346138	167	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.63543	5.780355	5.92528	0.0062948	0.00131165	0.0523832	0.0171898
chr10	98162682	98162782	4564687	0	+	0.51	(0.485,0.523]	chr10	435517	4	SS3_PROX	SS3_PROX:INTRON	R3HCC1L	ENSG00000166024.14	ENST00000370584.7:ENST00000298999.8	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.58723	5.779719999999999	5.97221	0.0203514	9.86421e-4	0.0979211	0.0140716
chr17	42698517	42698617	6736632	0	+	0.43	(0.419,0.45]	chr17	677991	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CNTNAP1	ENSG00000108797.12	ENST00000264638.9:ENST00000591662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	89	2	5.32195	5.779555	6.23716	0.0431627	8.82327e-4	0.138403	0.0129974
chr21	42908463	42908563	7622691	0	+	0.44	(0.419,0.45]	chr21	796494	2	SS3_PROX	SS3_PROX:INTRON	NDUFV3	ENSG00000160194.18	ENST00000460259.1:ENST00000340344.4:ENST00000354250.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	89	2	5.32195	5.779555	6.23716	0.0431627	8.82327e-4	0.138403	0.0129974
chr5	1326829	1326927	2609083	0	-	0.530612	(0.523,0.58]	chr5	259719	5	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	254	2	4.75153	5.779545	6.80756	0.00236582	6.79611e-5	0.0306624	0.0020548
chr2	168752314	168752414	947147	0	+	0.44	(0.419,0.45]	chr2	104005	340	INTRON	INTRON	CERS6	ENSG00000172292.15	ENST00000392687.4:ENST00000305747.11	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.4831	5.779525	6.07595	0.0345118	0.00132452	0.126025	0.0173138
chr16	21495493	21495593	6564591	0	-	0.3	(0.29,0.33]	chr16	654775	75	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522480.5:ENST00000522841.6:ENST00000437413.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	184	2	4.82371	5.77937	6.73503	0.00236326	2.4376e-4	0.0306624	0.00522003
chr7	76997722	76997821	3398777	0	+	0.626263	(0.58,1]	chr7	328286	70	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	1	193	2	4.0743	5.779315	7.48433	0.00136577	2.18425e-4	0.0176851	0.00835357
chr17	81208033	81208132	6983389	0	-	0.565657	(0.523,0.58]	chr17	713387	4	INTRON	INTRON	CEP131	ENSG00000141577.14	ENST00000374782.7:ENST00000269392.8:ENST00000450824.7:ENST00000575907.5	protein_coding	protein_coding	protein_coding	protein_coding	0	85	2	5.61976	5.7792	5.93864	0.0114442	0.00236826	0.0723462	0.0259199
chr3	188394512	188394612	1654205	0	+	0.36	(0.33,0.36]	chr3	173766	524	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1:ENST00000494233.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	85	2	5.61211	5.77902	5.94593	0.022456	0.00143977	0.102751	0.0183435
chr17	2679119	2679217	6667321	0	+	0.316327	(0.29,0.33]	chr17	667990	11	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000397195.10:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000397193.7:ENST00000574468.1:ENST00000571495.2:ENST00000675574.1:ENST00000675385.1:ENST00000675084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	85	2	5.44135	5.77893	6.11651	0.0236557	7.13924e-4	0.105002	0.0112151
chr7	893639	893739	3307721	0	+	0.61	(0.58,1]	chr7	320476	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000407192.5:ENST00000464468.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	81	2	5.55681	5.7788	6.00079	0.0126042	4.59827e-4	0.0761905	0.00821903
chr16	85374642	85374742	6516817	0	+	0.65	(0.58,1]	chr16	646391	153	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	225	2	5.06852	5.778755	6.48899	6.09599e-4	1.02074e-4	0.0144841	0.00277572
chr13	113588843	113588943	5658888	0	+	0.56	(0.523,0.58]	chr13	555775	26	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	84	2	5.55012	5.778565	6.00701	0.0217068	8.61362e-4	0.100615	0.0127848
chr1	205204480	205204579	647770	0	-	0.323232	(0.29,0.33]	chr1	76772	163	INTRON	INTRON	DSTYK	ENSG00000133059.17	ENST00000367162.8:ENST00000367161.7	protein_coding	protein_coding	protein_coding	protein_coding	0	85	2	5.61082	5.7783750000000005	5.94593	0.0101801	0.00264971	0.068447	0.027979
chr10	19358086	19358185	4452415	0	+	0.292929	(0.29,0.33]	chr10	426783	54	INTRON	INTRON	MALRD1	ENSG00000204740.11	ENST00000454679.7:ENST00000377266.7	protein_coding	protein_coding	protein_coding	protein_coding	0	85	2	5.61082	5.7783750000000005	5.94593	0.0101801	0.00264971	0.068447	0.027979
chr17	12060678	12060777	6680276	0	+	0.424242	(0.419,0.45]	chr17	670594	53	INTRON	INTRON	MAP2K4	ENSG00000065559.15	ENST00000582183.5:ENST00000415385.7:ENST00000602305.5:ENST00000602375.5:ENST00000602811.5:ENST00000353533.10:ENST00000602537.5:ENST00000602686.5:ENST00000538465.7:ENST00000582897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	86	2	5.66212	5.7782800000000005	5.89444	0.0266819	0.00206691	0.111563	0.0235758
chr22	31684928	31685028	7788794	0	-	0.44	(0.419,0.45]	chr22	817250	37	UTR3	UTR3:EXON_MRNA:INTRON	PRR14L	ENSG00000183530.14	ENST00000330495.8:ENST00000327423.11:ENST00000432485.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	86	2	5.66212	5.7782800000000005	5.89444	0.0266819	0.00206691	0.111563	0.0235758
chr4	153566452	153566552	2151890	0	+	0.44	(0.419,0.45]	chr4	217991	77	INTRON	INTRON	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000409959.8:ENST00000240487.5	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.66212	5.7782800000000005	5.89444	0.0266819	0.00206691	0.111563	0.0235758
chr1	202381415	202381515	317594	0	+	0.51	(0.485,0.523]	chr1	35751	319	INTRON	INTRON	PPP1R12B	ENSG00000077157.22	ENST00000391959.5:ENST00000608999.6:ENST00000480184.5:ENST00000356764.6:ENST00000476364.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	86	2	5.35167	5.7782350000000005	6.2048	0.0294163	5.23665e-4	0.116079	0.0090184
chr19	18468495	18468594	7347876	0	-	0.59596	(0.58,1]	chr19	761486	22	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	86	2	5.36153	5.777865	6.1942	0.00368616	0.00273899	0.0389784	0.028553
chr2	121478324	121478423	1262509	0	-	0.59596	(0.58,1]	chr2	136083	80	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	86	2	5.36153	5.777865	6.1942	0.00368616	0.00273899	0.0389784	0.028553
chr7	79453559	79453655	3402811	0	+	0.71875	(0.58,1]	chr7	328670	1	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MAGI2-AS3	ENSG00000234456.10	ENST00000616796.4:ENST00000429408.6:ENST00000683943.1:ENST00000426835.6:ENST00000446159.6:ENST00000663669.1:ENST00000661940.1:ENST00000616192.5:ENST00000657546.1:ENST00000655337.2	lncRNA	lncRNA	lncRNA	lncRNA	0	86	2	5.36153	5.777865	6.1942	0.00368616	0.00273899	0.0389784	0.028553
chr10	75584545	75584645	4522004	0	+	0.43	(0.419,0.45]	chr10	432253	316	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	264	2	4.44533	5.77741	7.10949	0.00251897	2.942e-4	0.031696	0.00599414
chr14	96295760	96295860	6050275	0	-	0.26	[0,0.29]	chr14	593586	2	SS3_PROX	SS3_PROX:INTRON	ATG2B	ENSG00000066739.12	ENST00000359933.6:ENST00000261834.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	83	2	5.63584	5.777205	5.91857	0.00698542	0.00193639	0.0555241	0.0225083
chr18	69435063	69435163	7083518	0	+	0.47	(0.45,0.485]	chr18	722102	334	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	0	85	2	5.68155	5.77699	5.87243	0.0143887	0.00241241	0.0821732	0.0261086
chr22	23223232	23223332	7692417	0	+	0.46	(0.45,0.485]	chr22	805046	235	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	85	2	5.68155	5.77699	5.87243	0.0143887	0.00241241	0.0821732	0.0261086
chr11	18011028	18011125	5015369	0	-	0.412371	(0.39,0.419]	chr11	484704	5	INTRON	INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528200.5:ENST00000532265.5:ENST00000529728.5:ENST00000530613.5:ENST00000532389.5:ENST00000530925.5:ENST00000533328.5:ENST00000532212.5:ENST00000524716.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	714	2	5.00062	5.776809999999999	6.553	8.15454e-4	1.9126e-6	0.016997	1.61727e-4
chr6	30614702	30614802	3117320	0	-	0.47	(0.45,0.485]	chr6	302532	1	SS3_PROX	SS3_PROX:INTRON	PPP1R10	ENSG00000204569.10	ENST00000376511.7:ENST00000484449.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	187	2	4.59248	5.776619999999999	6.96076	0.00209187	5.11238e-4	0.0287557	0.00887014
chr16	85233065	85233165	6515399	0	+	0.6	(0.58,1]	chr16	646377	53	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	87	2	5.31036	5.7764050000000005	6.24245	0.00334087	0.00312721	0.0368376	0.0311915
chr5	1056381	1056481	2608384	0	-	0.66	(0.58,1]	chr5	259539	4	SS5_PROX	SS5_PROX:INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10:ENST00000634447.1	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.31036	5.7764050000000005	6.24245	0.00334087	0.00312721	0.0368376	0.0311915
chr7	112204801	112204901	3692556	0	-	0.34	(0.33,0.36]	chr7	354969	2003	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	305	2	4.04559	5.776165	7.50674	7.70561e-4	3.8995e-4	0.0164417	0.00733542
chr3	197820730	197820830	1668989	0	+	0.56	(0.523,0.58]	chr3	175039	3	SS5_PROX	SS5_PROX:INTRON	LRCH3	ENSG00000186001.14	ENST00000443727.1:ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8:ENST00000493726.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	89	2	5.35452	5.77613	6.19774	0.0072907	0.00453096	0.0567247	0.0400651
chr7	121386597	121386697	3694943	0	-	0.31	(0.29,0.33]	chr7	355171	32	INTRON	INTRON	FAM3C	ENSG00000196937.11	ENST00000359943.8:ENST00000412653.5:ENST00000426156.1	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.22448	5.776125	6.32777	0.0331252	3.99124e-4	0.123313	0.00744627
chrX	1397724	1397824	7830138	0	+	0.58	(0.523,0.58]	chrX	822055	1	INTRON	INTRON	LINC00106	ENSG00000236871.7	ENST00000434938.7:ENST00000430235.7	lncRNA	lncRNA	lncRNA	lncRNA	0	88	2	5.40225	5.775880000000001	6.14951	0.00793972	0.00404292	0.0596361	0.0371291
chr6	5677807	5677907	2836554	0	+	0.44	(0.419,0.45]	chr6	277888	641	INTRON	INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000648580.1:ENST00000274680.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	86	2	5.59315	5.77533	5.95751	0.029494	0.0017735	0.116079	0.02121
chr19	17145991	17146090	7218906	0	+	0.434343	(0.419,0.45]	chr19	737731	1	INTRON	INTRON	MYO9B	ENSG00000099331.14	ENST00000682292.1:ENST00000595618.5:ENST00000594824.5:ENST00000397274.6:ENST00000595641.5	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.75936	5.775119999999999	5.79088	0.022052	0.00285253	0.101502	0.0294017
chr6	13591268	13591368	2855860	0	+	0.45	(0.419,0.45]	chr6	279047	2	SS3_PROX	SS3_PROX:INTRON	SIRT5	ENSG00000124523.17	ENST00000680432.1:ENST00000681012.1:ENST00000397350.7:ENST00000680442.1:ENST00000680754.1:ENST00000679658.1:ENST00000681243.1:ENST00000680747.1:ENST00000681818.1:ENST00000680402.1:ENST00000679663.1:ENST00000379250.10:ENST00000680852.1:ENST00000679922.1:ENST00000681231.1:ENST00000359782.8:ENST00000606117.2:ENST00000379262.8:ENST00000681905.1:ENST00000680937.1:ENST00000680151.1:ENST00000680707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	88	2	5.36395	5.774675	6.1854	0.0407485	0.00100635	0.135868	0.0142602
chr16	14991267	14991367	6403357	0	+	0.49	(0.485,0.523]	chr16	632736	140	INTRON	INTRON	PDXDC1	ENSG00000179889.20	ENST00000563679.5:ENST00000563667.5:ENST00000563522.5:ENST00000535621.6:ENST00000396410.9:ENST00000566426.1:ENST00000455313.6:ENST00000562119.5:ENST00000570001.5:ENST00000569715.5:ENST00000627450.2:ENST00000565362.5:ENST00000567306.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	89	2	5.35096	5.774565	6.19817	0.00723584	0.0047171	0.0565323	0.0413976
chr4	78183740	78183840	2067131	0	+	0.32	(0.29,0.33]	chr4	211144	1118	INTRON	INTRON	FRAS1	ENSG00000138759.20	ENST00000512123.4:ENST00000682513.1:ENST00000684159.1:ENST00000508900.2:ENST00000325942.11:ENST00000502446.6:ENST00000683711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	106	2	4.65868	5.774435	6.89019	0.0735584	7.82018e-5	0.17026	0.00227541
chr2	73267087	73267182	1190599	0	-	0.515789	(0.485,0.523]	chr2	129025	4	SS3_PROX	SS3_PROX:INTRON	FBXO41	ENSG00000163013.12	ENST00000295133.9:ENST00000520530.3:ENST00000521871.5	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.39869	5.774315	6.14994	0.00788098	0.00421243	0.059464500000000003	0.0380601
chr9	34399993	34400090	4296607	0	-	0.515464	(0.485,0.523]	chr9	410635	18	UTR3	UTR3:EXON_MRNA:INTRON	FAM219A	ENSG00000164970.15	ENST00000651358.1:ENST00000379080.5:ENST00000379081.5:ENST00000379084.5:ENST00000379087.5:ENST00000379089.5:ENST00000445726.5:ENST00000297620.8	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.39869	5.774315	6.14994	0.00788098	0.00421243	0.059464500000000003	0.0380601
chr6	154453954	154454054	3296982	0	-	0.43	(0.419,0.45]	chr6	319119	33	INTRON	INTRON	CNKSR3	ENSG00000153721.19	ENST00000607772.6:ENST00000479339.5	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.44447	5.774285	6.1041	0.0364384	0.00123471	0.128173	0.0164614
chr6	158328067	158328167	3061802	0	+	0.49	(0.485,0.523]	chr6	297592	134	INTRON	INTRON	ENSG00000274023:TULP4	ENSG00000274023.1:ENSG00000130338.13	ENST00000619713.1:ENST00000367097.8:ENST00000367094.6:ENST00000616856.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	4	799	2	4.91416	5.77411	6.63406	4.1109e-4	6.99421e-7	0.0116246	8.28384e-5
chrX	47571167	47571222	7878265	0	+	0.545455	(0.523,0.58]	chrX	825904	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARAF	ENSG00000078061.14	ENST00000377045.9:ENST00000470206.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	87	2	5.44845	5.77403	6.09961	0.00866655	0.00361636	0.0623824	0.0342681
chr1	21651391	21651487	419983	0	-	0.614583	(0.58,1]	chr1	49027	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	RAP1GAP	ENSG00000076864.21	ENST00000374765.9:ENST00000471600.6:ENST00000542643.6:ENST00000611549.4:ENST00000495204.5:ENST00000374757.7:ENST00000317967.11:ENST00000447293.5:ENST00000482984.5:ENST00000464457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	82	2	5.59324	5.77389	5.95454	0.0059453	0.0014734	0.0506158	0.0185589
chr4	51849764	51849864	2041530	0	+	0.42	(0.419,0.45]	chr4	208598	10	INTRON	INTRON	DCUN1D4	ENSG00000109184.15	ENST00000509376.5:ENST00000511675.5:ENST00000381441.7:ENST00000506673.5:ENST00000504113.5:ENST00000502930.5:ENST00000334635.10:ENST00000507741.5:ENST00000513800.5:ENST00000477560.5:ENST00000509068.5:ENST00000451288.6:ENST00000505403.5:ENST00000504661.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	87	2	5.61031	5.77375	5.93719	0.0176643	0.004032	0.0909046	0.0371291
chr17	56892729	56892825	6931125	0	-	0.510417	(0.485,0.523]	chr17	706271	1	INTRON	INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000574234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	103	2	4.71964	5.773569999999999	6.8275	0.0718646	8.64447e-5	0.168159	0.00245611
chr7	98317756	98317856	3648375	0	-	0.56	(0.523,0.58]	chr7	351234	4	SS3_PROX	SS3_PROX:INTRON	BAIAP2L1	ENSG00000006453.14	ENST00000005260.9:ENST00000462558.5:ENST00000473569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	183	2	4.57635	5.77274	6.96913	0.0017332	4.64368e-4	0.0257605	0.00826853
chr17	40150482	40150582	6732959	0	+	0.42	(0.419,0.45]	chr17	677136	85	INTRON	INTRON	CASC3	ENSG00000108349.17	ENST00000418132.7:ENST00000264645.12:ENST00000581849.1:ENST00000584997.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	86	2	5.55739	5.77272	5.98805	0.0310506	0.00164584	0.119758	0.0202325
chr12	69498436	69498536	5260924	0	+	0.44	(0.419,0.45]	chr12	513023	64	INTRON	INTRON	FRS2	ENSG00000166225.9	ENST00000547219.5:ENST00000550316.5:ENST00000547414.5:ENST00000548154.5:ENST00000549921.6:ENST00000550389.5:ENST00000550937.5:ENST00000549092.5:ENST00000550169.5	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.72351	5.772435	5.82136	0.0210659	0.00310292	0.0996078	0.0311614
chr20	44405757	44405857	7482973	0	+	0.58	(0.523,0.58]	chr20	779646	3	SS3_PROX	SS3_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	298	2	4.36896	5.772425	7.17589	0.00115604	1.08022e-4	0.0205679	0.00290098
chr1	3469693	3469793	5805	0	+	0.63	(0.58,1]	chr1	1228	1	SS5_PROX	SS5_PROX:INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5	protein_coding	protein_coding	protein_coding	protein_coding	0	91	2	5.14497	5.77231	6.39965	0.00474658	0.00241374	0.0413976	0.0309229
chr19	3529796	3529895	7191596	0	+	0.676768	(0.58,1]	chr19	732249	16	INTRON	INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	91	2	5.14497	5.77231	6.39965	0.00474658	0.00241374	0.0413976	0.0309229
chr15	99602509	99602609	6198706	0	+	0.48	(0.45,0.485]	chr15	609963	4	SS5_PROX	SS5_PROX:INTRON	MEF2A	ENSG00000068305.18	ENST00000560493.5:ENST00000354410.9:ENST00000558812.5:ENST00000558856.5:ENST00000685785.1:ENST00000559036.5:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000558049.5:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1:ENST00000559903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	85	2	5.6428	5.772235	5.90167	0.0137135	0.00265386	0.0799457	0.027979
chr22	46906794	46906894	7746459	0	+	0.48	(0.45,0.485]	chr22	812218	116	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	85	2	5.6428	5.772235	5.90167	0.0137135	0.00265386	0.0799457	0.027979
chr16	68291761	68291861	6476640	0	+	0.47	(0.45,0.485]	chr16	643235	1	SS5_PROX	SS5_PROX:INTRON	SLC7A6	ENSG00000103064.15	ENST00000618043.4:ENST00000648130.1:ENST00000219343.11:ENST00000379152.7:ENST00000566454.5:ENST00000567346.5:ENST00000563208.1:ENST00000562863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	84	2	5.6833	5.7721800000000005	5.86106	0.0195193	0.00153611	0.0955413	0.0191553
chr17	37119655	37119755	6890360	0	-	0.46	(0.45,0.485]	chr17	699623	60	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000619546.4:ENST00000617649.4:ENST00000614482.4:ENST00000613776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	84	2	5.6833	5.7721800000000005	5.86106	0.0195193	0.00153611	0.0955413	0.0191553
chr11	70818064	70818164	5062464	0	-	0.51	(0.485,0.523]	chr11	492713	105	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	85	2	5.39369	5.77188	6.15007	0.0275819	6.0909e-4	0.112782	0.0100377
chr1	162801572	162801667	257640	0	+	0.421053	(0.419,0.45]	chr1	30713	9	INTRON	INTRON	HSD17B7	ENSG00000132196.16	ENST00000254521.8:ENST00000485405.5:ENST00000649629.1:ENST00000494450.1:ENST00000470195.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	90	2	5.39934	5.771775	6.14421	0.0127879	0.00646489	0.0769397	0.0503748
chr11	12504729	12504829	4801325	0	+	0.51	(0.485,0.523]	chr11	460506	3	SS5_PROX	SS5_PROX:INTRON	PARVA	ENSG00000197702.14	ENST00000334956.15:ENST00000533345.5:ENST00000528916.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	94	2	4.96239	5.771625	6.58086	0.0518747	1.79455e-4	0.148503	0.00418827
chr16	75234523	75234611	6644452	0	-	0.704545	(0.58,1]	chr16	664407	2	SS5_PROX	SS5_PROX:INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000566982.1:ENST00000563038.5:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	420	2	5.58801	5.771504999999999	5.955	1.8134e-4	2.73347e-6	0.00759001	2.05551e-4
chr2	87528615	87528715	847936	0	+	0.54	(0.523,0.58]	chr2	95749	72	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000642451.1:ENST00000644478.1:ENST00000409139.6:ENST00000644125.1:ENST00000643743.1:ENST00000643276.1:ENST00000409898.2:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000646636.1:ENST00000629257.1:ENST00000409054.2	lncRNA	lncRNA	lncRNA	lncRNA	0	86	2	5.30795	5.771475000000001	6.235	0.0315825	4.59688e-4	0.120781	0.00821903
chr18	69463624	69463724	7083804	0	+	0.4	(0.39,0.419]	chr18	722102	620	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	1	192	2	4.8039	5.771095	6.73829	0.00411485	0.00035398200000000003	0.0414433	0.00683568
chr10	18552371	18552471	4642252	0	-	0.47	(0.45,0.485]	chr10	443320	4	SS3_PROX	SS3_PROX:INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.47648	5.771084999999999	6.06569	0.0104281	0.0039628	0.0687558	0.0368027
chr7	66702275	66702375	3382438	0	+	0.43	(0.419,0.45]	chr7	326362	167	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	285	2	3.65067	5.7708200000000005	7.89097	0.00249015	6.0852e-4	0.0267758	0.0144778
chr18	56988578	56988678	7070059	0	+	0.47	(0.45,0.485]	chr18	721006	257	INTRON	INTRON	WDR7	ENSG00000091157.15	ENST00000589935.1:ENST00000254442.8:ENST00000357574.7:ENST00000591449.1:ENST00000585669.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	84	2	5.61431	5.7706800000000005	5.92705	0.0217589	0.00129636	0.100615	0.0170746
chr15	22557092	22557192	6059845	0	+	0.61	(0.58,1]	chr15	594969	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	81	2	5.67642	5.770665	5.86491	0.00707578	0.00117039	0.0558168	0.0157899
chr10	133349986	133350086	4783434	0	-	0.67	(0.58,1]	chr10	457516	38	INTRON	INTRON	ENSG00000226699	ENSG00000226699.1	ENST00000452591.1	lncRNA	lncRNA	lncRNA	lncRNA	2	238	2	3.90474	5.7706349999999995	7.63653	5.953e-4	1.53179e-4	0.00989491	0.00689544
chr10	46807006	46807105	4484753	0	+	0.474747	(0.45,0.485]	chr10	428921	47	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000688259.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	84	2	5.74913	5.770519999999999	5.79191	0.017574	0.00183113	0.0906595	0.0216571
chr16	85246064	85246164	6515529	0	+	0.54	(0.523,0.58]	chr16	646377	183	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	234	2	4.79971	5.770440000000001	6.74117	0.00202295	1.05811e-4	0.0283135	0.00286061
chr3	65539061	65539160	1810856	0	-	0.434343	(0.419,0.45]	chr3	187255	63	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5:ENST00000476403.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	93	2	5.09133	5.7704249999999995	6.44952	0.0586308	5.09118e-4	0.155565	0.00884498
chr9	127556351	127556451	4412067	0	-	0.56	(0.523,0.58]	chr9	420485	242	INTRON	INTRON	NIBAN2	ENSG00000136830.12	ENST00000373314.7:ENST00000373312.4:ENST00000478917.1:ENST00000468379.1:ENST00000484348.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	84	2	5.65959	5.770155	5.88072	0.0126258	0.0021416	0.0761905	0.0240825
chr3	119824364	119824463	1884353	0	-	0.40404	(0.39,0.419]	chr3	191195	32	UTR3	UTR3:EXON_MRNA	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1	protein_coding	protein_coding	protein_coding	protein_coding	0	85	2	5.66992	5.7700949999999995	5.87027	0.0237738	0.00198333	0.105296	0.0229039
chr3	158148293	158148393	1607355	0	+	0.41	(0.39,0.419]	chr3	169356	115	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000494002.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000684512.1:ENST00000683394.1:ENST00000684156.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000471911.5:ENST00000683137.1:ENST00000477788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	85	2	5.66992	5.7700949999999995	5.87027	0.0237738	0.00198333	0.105296	0.0229039
chr6	128515629	128515729	3257127	0	-	0.37	(0.36,0.39]	chr6	315230	234	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000524534.5:ENST00000525459.1:ENST00000392449.4:ENST00000532751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	318	2	3.92308	5.76999	7.6169	0.00603494	1.60561e-5	0.0512383	7.18732e-4
chr3	65539260	65539359	1810858	0	-	0.363636	(0.36,0.39]	chr3	187255	65	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5:ENST00000476403.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	89	2	5.24317	5.76967	6.29617	0.0433841	6.68957e-4	0.138813	0.0107572
chr10	18552870	18552970	4642257	0	-	0.43	(0.419,0.45]	chr10	443321	5	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.44407	5.769625	6.09518	0.0138177	0.00585948	0.0803169	0.0474117
chr7	139705242	139705342	3723198	0	-	0.54	(0.523,0.58]	chr7	357498	732	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	2	243	2	4.24728	5.769405	7.29153	9.18957e-4	3.21002e-4	0.0180726	0.0063695
chr10	74342739	74342839	4513603	0	+	0.43	(0.419,0.45]	chr10	431944	31	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	86	2	5.52073	5.76934	6.01795	0.0327198	0.00152916	0.122543	0.0191213
chr10	18568359	18568459	4642412	0	-	0.44	(0.419,0.45]	chr10	443321	160	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.68676	5.76898	5.8512	0.0201381	0.00338051	0.0973365	0.0328791
chr15	41481182	41481282	6084600	0	+	0.45	(0.419,0.45]	chr15	598327	6	UTR3	UTR3:EXON_MRNA	RTF1	ENSG00000137815.15	ENST00000389629.9	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.68676	5.76898	5.8512	0.0201381	0.00338051	0.0973365	0.0328791
chr1	81868038	81868138	170832	0	+	0.39	(0.36,0.39]	chr1	18909	306	INTRON	INTRON	ADGRL2	ENSG00000117114.21	ENST00000370728.5:ENST00000370730.5:ENST00000370721.5:ENST00000370723.5:ENST00000370725.5:ENST00000370727.5:ENST00000469377.6:ENST00000359929.7:ENST00000674419.1:ENST00000674442.1:ENST00000674489.1:ENST00000674209.1:ENST00000674307.1:ENST00000674168.1:ENST00000674407.1:ENST00000370717.6:ENST00000627151.2:ENST00000319517.10:ENST00000370713.5:ENST00000370715.5:ENST00000674492.1:ENST00000674373.1:ENST00000674410.1:ENST00000674367.1:ENST00000686636.1:ENST00000674333.1:ENST00000674393.1:ENST00000674208.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	86	2	5.61929	5.768785	5.91828	0.0158902	0.00359045	0.0859576	0.0342681
chr12	12338867	12338963	5374301	0	-	0.510417	(0.485,0.523]	chr12	527041	3	SS3_PROX	SS3_PROX:INTRON	MANSC1	ENSG00000111261.14	ENST00000535902.6:ENST00000396349.3	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.65601	5.76858	5.88115	0.012541	0.00224147	0.0761905	0.024843
chr21	31968685	31968785	7608037	0	+	0.52	(0.485,0.523]	chr21	794563	3	SS5_PROX	SS5_PROX:INTRON	HUNK	ENSG00000142149.9	ENST00000270112.7	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.65601	5.76858	5.88115	0.012541	0.00224147	0.0761905	0.024843
chr11	115199037	115199137	5128058	0	-	0.39	(0.36,0.39]	chr11	498042	2	INTRON	INTRON	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000612235.4:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000616271.4:ENST00000441886.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	191	2	4.73459	5.768549999999999	6.80251	0.00357532	4.2669e-4	0.0383635	0.00779962
chr14	56583420	56583518	5825833	0	+	0.459184	(0.45,0.485]	chr14	569604	30	INTRON	INTRON	TMEM260	ENSG00000070269.14	ENST00000556810.5:ENST00000556422.5:ENST00000261556.11:ENST00000557657.5:ENST00000555497.5:ENST00000556975.5:ENST00000557626.5:ENST00000539559.6:ENST00000538838.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	84	2	5.75605	5.768505	5.78096	0.0166968	0.002004	0.0884836	0.0230381
chr15	78450752	78450852	6158244	0	+	0.46	(0.45,0.485]	chr15	606043	105	INTRON	INTRON	IREB2	ENSG00000136381.13	ENST00000560840.5:ENST00000559215.5:ENST00000258886.13:ENST00000558525.5:ENST00000560440.5:ENST00000558570.5:ENST00000560454.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	84	2	5.75605	5.768505	5.78096	0.0166968	0.002004	0.0884836	0.0230381
chr21	43030199	43030297	7623316	0	+	0.469388	(0.45,0.485]	chr21	796571	2	UTR3	UTR3:EXON_MRNA	PKNOX1	ENSG00000160199.15	ENST00000432907.6:ENST00000291547.10:ENST00000560448.5:ENST00000558955.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	84	2	5.75605	5.768505	5.78096	0.0166968	0.002004	0.0884836	0.0230381
chr9	134367578	134367678	4261099	0	+	0.7	(0.58,1]	chr9	406311	406	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	89	2	5.20223	5.7683	6.33437	0.00411607	0.00276493	0.0374453	0.0332418
chr1	161791107	161791207	254792	0	+	0.39	(0.36,0.39]	chr1	30431	3	SS3_PROX	SS3_PROX:INTRON	ATF6	ENSG00000118217.7	ENST00000680688.1:ENST00000679853.1:ENST00000681738.1:ENST00000681801.1:ENST00000681779.1:ENST00000367942.4:ENST00000681001.1:ENST00000679886.1:ENST00000681169.1:ENST00000681492.1:ENST00000680481.1:ENST00000680180.1:ENST00000681187.1:ENST00000680462.1:ENST00000680633.1:ENST00000681557.1:ENST00000681912.1:ENST00000679833.1:ENST00000681541.1:ENST00000681036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	197	2	5.06017	5.7681450000000005	6.47612	0.00632423	1.70561e-4	0.0524897	0.00403679
chr2	55022193	55022293	1148249	0	-	0.55	(0.523,0.58]	chr2	125466	78	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	5.65749	5.767695	5.8779	0.0182707	0.00121652	0.0921579	0.0162693
chr2	238351939	238352035	1073448	0	+	0.53125	(0.523,0.58]	chr2	116386	22	INTRON	INTRON	TRAF3IP1	ENSG00000204104.12	ENST00000391993.7:ENST00000373327.5:ENST00000462122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	83	2	5.69157	5.76765	5.84373	0.0172851	0.00133116	0.0897247	0.0173248
chr20	33547646	33547746	7458121	0	+	0.44	(0.419,0.45]	chr20	776442	570	INTRON	INTRON	CBFA2T2	ENSG00000078699.22	ENST00000471007.1:ENST00000342704.11:ENST00000375279.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	87	2	5.57051	5.7676300000000005	5.96475	0.0169309	0.00441471	0.088829	0.0393688
chr2	138567552	138567650	904555	0	+	0.469388	(0.45,0.485]	chr2	101982	22	INTRON	INTRON	SPOPL	ENSG00000144228.9	ENST00000280098.9:ENST00000420679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	185	2	4.67519	5.767625	6.86006	0.00252685	4.03946e-4	0.031696	0.00752202
chr15	60393440	60393540	6283665	0	-	0.39	(0.36,0.39]	chr15	619323	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000421017.6:ENST00000560466.5:ENST00000558132.5:ENST00000561022.5:ENST00000560367.6:ENST00000558503.6:ENST00000558998.5:ENST00000559559.5:ENST00000560165.5:ENST00000559725.5:ENST00000677258.1:ENST00000559467.5:ENST00000561445.5:ENST00000557937.5:ENST00000557904.5:ENST00000559370.5:ENST00000560546.5:ENST00000557986.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	92	2	5.26508	5.7671399999999995	6.2692	0.00897657	0.00795848	0.0637469	0.0578938
chr19	4334643	4334742	7312817	0	-	0.484848	(0.45,0.485]	chr19	754660	2	INTRON	INTRON	STAP2	ENSG00000178078.12	ENST00000594605.6:ENST00000600324.5:ENST00000599736.5:ENST00000601482.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	85	2	5.60298	5.76666	5.93034	0.0130794	0.00292492	0.0782396	0.029882
chr1	43765789	43765889	108914	0	+	0.53	(0.523,0.58]	chr1	13503	266	INTRON	INTRON	ST3GAL3	ENSG00000126091.21	ENST00000646096.1:ENST00000532911.6:ENST00000643597.1:ENST00000643886.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000646109.1:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000479383.6:ENST00000647482.1:ENST00000645394.1:ENST00000647128.1:ENST00000484868.2:ENST00000461066.6:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1:ENST00000642194.1:ENST00000372368.7:ENST00000646686.1:ENST00000372366.6:ENST00000361812.9:ENST00000469715.6:ENST00000372369.5:ENST00000372367.5:ENST00000372365.5:ENST00000528371.5:ENST00000533212.5:ENST00000530581.5:ENST00000531816.1:ENST00000531993.6:ENST00000490541.6:ENST00000372362.6:ENST00000531451.5:ENST00000646416.1:ENST00000645117.1:ENST00000533933.6:ENST00000332628.11:ENST00000643813.1:ENST00000644922.1:ENST00000644287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	85	2	5.35124	5.766265	6.18129	0.0295772	5.34061e-4	0.116079	0.0091384
chr20	64270985	64271084	7511222	0	+	0.494949	(0.485,0.523]	chr20	783907	26	INTRON	INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609818.1	protein_coding	protein_coding	protein_coding	protein_coding	0	117	2	4.60518	5.766220000000001	6.92726	0.0233371	0.00186327	0.110098	0.0269723
chr16	84746372	84746471	6514295	0	+	0.50505	(0.485,0.523]	chr16	646296	3	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000563892.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	83	2	5.65791	5.76611	5.87431	0.0181582	0.00127835	0.0921579	0.0168904
chr22	50679828	50679928	7754967	0	+	0.52	(0.485,0.523]	chr22	812715	4	SS5_PROX	SS5_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	83	2	5.65791	5.76611	5.87431	0.0181582	0.00127835	0.0921579	0.0168904
chr11	70766366	70766466	5061945	0	-	0.51	(0.485,0.523]	chr11	492701	485	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	83	2	5.692	5.76607	5.84014	0.0171772	0.00139792	0.0895975	0.0179863
chr8	142667309	142667405	4095186	0	-	0.6875	(0.58,1]	chr8	389059	4	INTRON	INTRON	JRK	ENSG00000234616.9	ENST00000612905.2:ENST00000615982.4:ENST00000571961.7:ENST00000503272.1:ENST00000591357.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	81	2	5.43752	5.76601	6.0945	0.0156166	3.47472e-4	0.0849828	0.00673552
chr13	50560319	50560419	5598228	0	+	0.32	(0.29,0.33]	chr13	551685	266	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1:ENST00000484869.6	lncRNA	lncRNA	lncRNA	lncRNA	0	83	2	5.73214	5.765955	5.79977	0.0146933	0.00164635	0.0826843	0.0202325
chr16	11791123	11791223	6549974	0	-	0.57	(0.523,0.58]	chr16	652048	82	INTRON	INTRON	ZC3H7A	ENSG00000122299.12	ENST00000355758.9:ENST00000571198.5:ENST00000575170.1:ENST00000576018.5:ENST00000572781.5:ENST00000574995.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	251	2	3.94014	5.765795	7.59145	7.92645e-4	5.0213e-4	0.0129939	0.0120621
chr16	85232265	85232365	6515391	0	+	0.51	(0.485,0.523]	chr16	646377	45	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	92	2	5.19749	5.76569	6.33389	0.00672953	0.00567224	0.0519464	0.0496143
chr11	485546	485645	4784661	0	+	0.676768	(0.58,1]	chr11	457913	51	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	92	2	4.88945	5.76557	6.64169	0.0388928	6.2385e-5	0.131324	0.00192539
chr1	3469793	3469893	5806	0	+	0.62	(0.58,1]	chr1	1228	2	SS5_PROX	SS5_PROX:INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5	protein_coding	protein_coding	protein_coding	protein_coding	0	85	2	5.36153	5.76549	6.16945	0.00387582	0.00273899	0.0401256	0.028553
chr1	243480844	243480944	370443	0	+	0.6	(0.58,1]	chr1	41881	46	INTRON	INTRON	SDCCAG8	ENSG00000054282.16	ENST00000366541.8:ENST00000435549.1	protein_coding	protein_coding	protein_coding	protein_coding	0	85	2	5.36153	5.76549	6.16945	0.00387582	0.00273899	0.0401256	0.028553
chr12	48003241	48003341	5421213	0	-	0.5	(0.485,0.523]	chr12	531091	2	SS3_PROX	SS3_PROX:INTRON	COL2A1	ENSG00000139219.19	ENST00000380518.8:ENST00000337299.7:ENST00000474996.6:ENST00000490609.2:ENST00000465743.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	83	2	5.623	5.765345	5.90769	0.0192139	0.0011708	0.095424900000000007	0.0157899
chr19	1171930	1172029	7305772	0	-	0.545455	(0.523,0.58]	chr19	753058	29	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	5.75742	5.765145	5.77287	0.0155135	0.00160162	0.0849828	0.0197827
chr12	132953650	132953750	5542068	0	-	0.55	(0.523,0.58]	chr12	547064	50	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	84	2	5.61976	5.764865	5.90997	0.012016	0.00236826	0.0743424	0.0259199
chr13	99368702	99368801	5638539	0	+	0.575758	(0.523,0.58]	chr13	553755	4	INTRON	INTRON	UBAC2	ENSG00000134882.16	ENST00000355700.9:ENST00000403766.8:ENST00000376440.6:ENST00000494576.5:ENST00000473194.5:ENST00000460562.5:ENST00000480738.1:ENST00000474510.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	84	2	5.61976	5.764865	5.90997	0.012016	0.00236826	0.0743424	0.0259199
chr7	47353128	47353228	3587322	0	-	0.55	(0.523,0.58]	chr7	346030	64	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.61976	5.764865	5.90997	0.012016	0.00236826	0.0743424	0.0259199
chr19	58327214	58327314	7301068	0	+	0.63	(0.58,1]	chr19	752037	1	SS5_PROX	SS5_PROX:INTRON	ZSCAN22	ENSG00000182318.6	ENST00000329665.5	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.41094	5.7647949999999994	6.11865	0.00429384	0.00240622	0.042386	0.0261006
chr4	150775420	150775520	2347827	0	-	0.43	(0.419,0.45]	chr4	234774	132	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000509835.5:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	86	2	5.64904	5.76474	5.88044	0.0192645	0.00368884	0.0954446	0.0348088
chr6	169650650	169650747	3304370	0	-	0.556701	(0.523,0.58]	chr6	319869	10	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	181	2	4.64612	5.764685	6.88325	0.00204616	3.78839e-4	0.0283511	0.00719572
chr12	22478027	22478122	5383600	0	-	0.347368	(0.33,0.36]	chr12	527980	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	C2CD5	ENSG00000111731.13	ENST00000333957.8:ENST00000446597.6:ENST00000536386.5:ENST00000396028.6:ENST00000542676.5:ENST00000545552.5:ENST00000541310.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	84	2	5.68109	5.7645800000000005	5.84807	0.0201622	0.00184078	0.0973366	0.0217471
chr13	75402687	75402787	5727211	0	-	0.26	[0,0.29]	chr13	561722	255	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	1	180	2	4.4147	5.7645599999999995	7.11442	6.55393e-4	5.8502e-4	0.0141644	0.0105817
chr9	14792144	14792242	4279624	0	-	0.387755	(0.36,0.39]	chr9	408901	27	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7:ENST00000466679.1:ENST00000497634.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	256	2	4.22503	5.764475	7.30392	0.00143567	4.97267e-4	0.0232366	0.00869303
chr16	67466302	67466401	6607983	0	-	0.464646	(0.45,0.485]	chr16	661121	72	INTRON	INTRON	ATP6V0D1	ENSG00000159720.13	ENST00000290949.8:ENST00000565835.5:ENST00000540149.5:ENST00000561852.5:ENST00000563064.5:ENST00000564191.5:ENST00000564788.1:ENST00000561658.5:ENST00000568298.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	187	2	4.96547	5.764415	6.56336	0.00436001	1.73515e-4	0.0427656	0.0040962
chr6	117707210	117707308	2992530	0	+	0.336735	(0.33,0.36]	chr6	293157	3	UTR3	UTR3:EXON_MRNA	NUS1	ENSG00000153989.8	ENST00000368494.4	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.0592	5.764215	6.46923	0.0504445	3.61814e-4	0.148216	0.0069669
chr9	134337837	134337937	4260801	0	+	0.55	(0.523,0.58]	chr9	406311	108	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	88	2	5.35452	5.764175	6.17383	0.00760615	0.00453096	0.0579698	0.0400651
chr11	65444142	65444241	4871783	0	+	0.616162	(0.58,1]	chr11	468177	215	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	111	18832	2	5.39135	5.764095	6.13684	1.78795e-6	7.45739e-8	9.85957e-4	1.96307e-5
chr12	48936992	48937089	5423606	0	-	0.546392	(0.523,0.58]	chr12	531642	14	UTR3	UTR3:EXON_MRNA	ARF3	ENSG00000134287.10	ENST00000256682.9	protein_coding	protein_coding	protein_coding	protein_coding	3	638	2	5.56372	5.764060000000001	5.9644	1.84887e-4	4.87519e-6	0.00766974	3.1014e-4
chr4	40078081	40078181	2036510	0	+	0.3	(0.29,0.33]	chr4	207937	2	INTRON	INTRON	N4BP2	ENSG00000078177.14	ENST00000261435.11:ENST00000511480.5:ENST00000515550.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	84	2	5.61082	5.76404	5.91726	0.010702	0.00264971	0.0701493	0.027979
chr17	15463964	15464064	6860074	0	-	0.52	(0.485,0.523]	chr17	695067	105	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	84	2	5.43453	5.763859999999999	6.09319	0.0258944	7.11715e-4	0.109555	0.0112082
chr20	36859473	36859573	7557096	0	-	0.44	(0.419,0.45]	chr20	789157	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	1	193	2	4.68882	5.7637350000000005	6.83865	0.00404244	5.28169e-4	0.0412991	0.00907271
chr9	14612768	14612868	4278227	0	-	0.32	(0.29,0.33]	chr9	408733	18	UTR3	UTR3:EXON_MRNA	ZDHHC21	ENSG00000175893.12	ENST00000380916.9	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.1277	5.763669999999999	6.39964	0.0382902	3.26144e-4	0.131324	0.00644787
chr22	50235519	50235619	7827216	0	-	0.51	(0.485,0.523]	chr22	821200	16	INTRON	INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	83	2	5.75784	5.763565	5.76929	0.0154142	0.00167976	0.0849828	0.0203806
chr13	113033272	113033371	5655962	0	+	0.676768	(0.58,1]	chr13	555157	64	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486806.1:ENST00000473345.5	protein_coding	protein_coding	protein_coding	protein_coding	1	168	2	4.69024	5.763545000000001	6.83685	9.44859e-4	2.07711e-4	0.0183873	0.00464072
chr10	75896823	75896923	4525137	0	+	0.42	(0.419,0.45]	chr10	432292	129	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	327	2	3.54068	5.76339	7.9861	0.0130417	6.52302e-6	0.0781923	3.81713e-4
chr10	132755772	132755872	4619030	0	+	0.62	(0.58,1]	chr10	441201	19	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	1	170	2	5.06433	5.763225	6.46212	0.00211728	6.09512e-5	0.028892	0.0018918
chr14	104720288	104720385	5925629	0	+	0.556701	(0.523,0.58]	chr14	579884	16	UTR3	UTR3:EXON_MRNA	INF2	ENSG00000203485.14	ENST00000330634.11:ENST00000392634.9:ENST00000675207.1:ENST00000675638.1	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.30515	5.76321	6.22127	0.00699217	0.00509102	0.0555241	0.0433513
chr9	133852893	133852993	4428927	0	-	0.57	(0.523,0.58]	chr9	423304	182	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.30515	5.76321	6.22127	0.00699217	0.00509102	0.0555241	0.0433513
chr1	246143080	246143180	702213	0	-	0.35	(0.33,0.36]	chr1	82410	468	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	84	2	5.61211	5.763075000000001	5.91404	0.022456	0.00156051	0.102751	0.0194067
chr18	74623381	74623481	7089505	0	+	0.5	(0.485,0.523]	chr18	722412	251	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000582337.5	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.21769	5.763045	6.3084	0.0359739	3.92049e-4	0.127853	0.00735595
chrX	130832441	130832541	8104862	0	-	0.35	(0.33,0.36]	chrX	845107	228	INTRON	INTRON	ENOX2	ENSG00000165675.19	ENST00000338144.8:ENST00000394363.6:ENST00000370935.5:ENST00000686943.1:ENST00000432489.5:ENST00000492263.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	84	2	5.74693	5.76293	5.77893	0.0181681	0.00218403	0.0921579	0.0244273
chr19	2334921	2335021	7189470	0	+	0.63	(0.58,1]	chr19	731781	2	SS5_PROX	SS5_PROX:INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	80	2	5.55681	5.762475	5.96814	0.0126042	5.06433e-4	0.0761905	0.00881473
chr2	149787947	149788047	921826	0	+	0.48	(0.45,0.485]	chr2	102794	438	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	0	84	2	5.50422	5.762455	6.02069	0.0257993	0.00101549	0.109555	0.0143256
chr15	101353946	101354045	6363078	0	-	0.555556	(0.523,0.58]	chr15	627201	58	INTRON	INTRON	PCSK6	ENSG00000140479.18	ENST00000677364.1:ENST00000676598.1:ENST00000558951.5:ENST00000398185.6:ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000679007.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000559605.1:ENST00000560902.5:ENST00000611967.4:ENST00000615296.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	86	2	5.26332	5.762225	6.26113	0.0337698	4.27166e-4	0.124319	0.00779962
chr4	3415044	3415144	2005598	0	+	0.68	(0.58,1]	chr4	204697	2	SS5_PROX	SS5_PROX:INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000513784.7:ENST00000338806.4:ENST00000506998.5:ENST00000508158.5:ENST00000504194.5:ENST00000512266.5:ENST00000513991.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	80	2	5.75506	5.7622	5.76934	0.00849371	9.38062e-4	0.0617717	0.0135546
chr1	43592901	43593001	107379	0	+	0.6	(0.58,1]	chr1	13239	3	SS5_PROX	SS5_PROX:INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	1	168	2	4.67156	5.76202	6.85248	9.12934e-4	2.20504e-4	0.0180377	0.00485102
chr7	47348349	47348449	3587274	0	-	0.51	(0.485,0.523]	chr7	346030	16	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.39869	5.761950000000001	6.12521	0.00823189	0.00421243	0.0608959	0.0380601
chr6	20988141	20988241	2868484	0	+	0.41	(0.39,0.419]	chr6	279746	322	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.32971	5.761785	6.19386	0.0390381	8.79539e-4	0.131575	0.0129939
chr10	132688991	132689091	4618354	0	+	0.45	(0.419,0.45]	chr10	441157	381	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.18804	5.76173	6.33542	0.051668	6.85495e-4	0.148503	0.0108846
chr16	85396733	85396833	6517038	0	+	0.68	(0.58,1]	chr16	646391	374	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.14497	5.761595	6.37822	0.00474658	0.00252415	0.0413976	0.031696
chr10	92911905	92912003	4551824	0	+	0.469388	(0.45,0.485]	chr10	434438	19	INTRON	INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1:ENST00000371552.8:ENST00000443748.6:ENST00000260762.10:ENST00000497262.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	87	2	5.43172	5.76151	6.0913	0.00998516	0.00440365	0.0673647	0.0393688
chr2	186655297	186655387	973004	0	+	0.422222	(0.419,0.45]	chr2	106931	2	INTRON	INTRON	ITGAV	ENSG00000138448.12	ENST00000261023.8:ENST00000374907.7:ENST00000433736.6	protein_coding	protein_coding	protein_coding	protein_coding	0	85	2	5.72794	5.761135	5.79433	0.0242188	0.00262626	0.106588	0.0278348
chr6	158343166	158343266	3061953	0	+	0.51	(0.485,0.523]	chr6	297592	285	INTRON	INTRON	ENSG00000274023:TULP4	ENSG00000274023.1:ENSG00000130338.13	ENST00000619713.1:ENST00000367097.8:ENST00000367094.6:ENST00000616856.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	0	83	2	5.73251	5.76109	5.78967	0.0146211	0.00184599	0.0826064	0.0217471
chr19	15641813	15641913	7215371	0	+	0.56	(0.523,0.58]	chr19	737132	2	SS5_PROX	SS5_PROX:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	202	2	4.04167	5.760260000000001	7.47885	0.00206682	6.30946e-4	0.0235758	0.0147478
chr6	63641476	63641575	2934317	0	+	0.393939	(0.39,0.419]	chr6	288790	43	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	698	2	5.53034	5.7600750000000005	5.98981	2.83638e-4	1.06377e-5	0.00957277	5.37957e-4
chr1	183473400	183473490	301140	0	+	0.533333	(0.523,0.58]	chr1	34237	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	222	2	4.54001	5.7600549999999995	6.9801	0.00336149	5.12704e-5	0.0370375	0.00167326
chr20	62958272	62958368	7508279	0	+	0.510417	(0.485,0.523]	chr20	783180	3	INTRON	INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	653	2	5.15178	5.760009999999999	6.36824	3.9161e-4	1.70408e-6	0.0113511	1.49137e-4
chr7	103936770	103936870	3663166	0	-	0.34	(0.33,0.36]	chr7	353511	192	INTRON	INTRON	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1:ENST00000681401.1:ENST00000679689.1:ENST00000681182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	215	2	5.48228	5.7598400000000005	6.0374	0.0113089	4.31367e-5	0.0722887	0.00147833
chr17	57616175	57616266	6763381	0	+	0.43956	(0.419,0.45]	chr17	682173	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000674898.1:ENST00000577241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	85	2	5.59315	5.759734999999999	5.92632	0.029494	0.00191339	0.116079	0.0223437
chr15	71935884	71935984	6315272	0	-	0.42	(0.419,0.45]	chr15	622682	4	SS3_PROX	SS3_PROX:INTRON	MYO9A	ENSG00000066933.16	ENST00000356056.10:ENST00000564571.5:ENST00000444904.5:ENST00000563542.5:ENST00000566885.5:ENST00000566744.5:ENST00000563648.1:ENST00000565528.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	89	2	5.39934	5.75962	6.1199	0.0132894	0.00646489	0.0787251	0.0503748
chr10	91412664	91412764	4546542	0	+	0.37	(0.36,0.39]	chr10	433731	17	INTRON	INTRON	HECTD2	ENSG00000165338.17	ENST00000631422.1:ENST00000446394.5:ENST00000298068.10:ENST00000371681.8	protein_coding	protein_coding	protein_coding	protein_coding	0	85	2	5.49224	5.7596050000000005	6.02697	0.0304242	0.00133548	0.11845	0.0173572
chr22	46648919	46649019	7744667	0	+	0.47	(0.45,0.485]	chr22	812052	106	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	2	315	2	4.19572	5.759415	7.32311	0.00310689	2.42204e-5	0.035596	9.65272e-4
chr6	169650358	169650456	3304367	0	-	0.561224	(0.523,0.58]	chr6	319869	7	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	83	2	5.69834	5.759365	5.82039	0.0139724	0.00194036	0.0805959	0.0225083
chr10	18556768	18556867	4642296	0	-	0.454545	(0.45,0.485]	chr10	443321	44	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	91	2	5.23735	5.7593250000000005	6.2813	0.00719875	0.00687715	0.056408	0.0526888
chr15	76357140	76357239	6326385	0	-	0.464646	(0.45,0.485]	chr15	624186	26	INTRON	INTRON	SCAPER	ENSG00000140386.13	ENST00000563290.6:ENST00000538941.6:ENST00000324767.11	protein_coding	protein_coding	protein_coding	protein_coding	0	91	2	5.23735	5.7593250000000005	6.2813	0.00719875	0.00687715	0.056408	0.0526888
chr12	117053728	117053828	5514412	0	-	0.64	(0.58,1]	chr12	542873	4	SS5_PROX	SS5_PROX:INTRON	TESC	ENSG00000088992.18	ENST00000470612.5:ENST00000335209.12:ENST00000541210.5:ENST00000462502.5:ENST00000535198.1:ENST00000482176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	80	2	5.71628	5.7590900000000005	5.8019	0.007984	0.00104668	0.0596361	0.0146403
chr1	43983030	43983130	110992	0	+	0.58	(0.523,0.58]	chr1	13826	1	SS5_PROX	SS5_PROX:INTRON	B4GALT2	ENSG00000117411.18	ENST00000434555.7:ENST00000372324.6:ENST00000481924.2:ENST00000497866.6:ENST00000485678.6:ENST00000356836.10:ENST00000309519.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	84	2	5.5788	5.75872	5.93864	0.0114442	0.00262418	0.0723462	0.0278348
chr7	5364416	5364515	3535701	0	-	0.535354	(0.523,0.58]	chr7	341443	12	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6	protein_coding	protein_coding	protein_coding	protein_coding	1	181	2	4.57635	5.758705	6.94106	0.00183008	4.64368e-4	0.0266451	0.00826853
chr9	77941839	77941939	4320953	0	-	0.4	(0.39,0.419]	chr9	412907	191	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	0	85	2	5.49088	5.75864	6.0264	0.0309972	0.00134695	0.119758	0.0174765
chr10	100998686	100998784	4570108	0	+	0.44898	(0.419,0.45]	chr10	436338	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	LZTS2	ENSG00000107816.17	ENST00000426584.5:ENST00000370223.7:ENST00000489526.1:ENST00000429732.5:ENST00000481129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	261	2	4.05832	5.75851	7.4587	0.0013474	8.54207e-4	0.0224436	0.0127181
chr20	36859373	36859473	7557095	0	-	0.52	(0.485,0.523]	chr20	789156	4	SS5_PROX	SS5_PROX:INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	1	182	2	4.5471	5.758330000000001	6.96956	0.00171649	5.20483e-4	0.025659	0.00899129
chr4	128859627	128859726	2132084	0	+	0.494949	(0.485,0.523]	chr4	216567	18	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	5.5129	5.758155	6.00341	0.0229047	9.07333e-4	0.102982	0.0132726
chr1	19090064	19090162	408806	0	-	0.479592	(0.45,0.485]	chr1	47401	7	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375224.1	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.46558	5.75809	6.0506	0.0273644	9.38528e-4	0.112372	0.0135546
chr9	126470542	126470642	4242070	0	+	0.56	(0.523,0.58]	chr9	402698	223	INTRON	INTRON	MVB12B	ENSG00000196814.15	ENST00000361171.8	protein_coding	protein_coding	protein_coding	protein_coding	0	91	2	5.01677	5.758005000000001	6.49924	0.0482765	2.16101e-4	0.144601	0.00477041
chr4	77064612	77064712	2254871	0	-	0.32	(0.29,0.33]	chr4	227732	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CCNI	ENSG00000118816.11	ENST00000237654.9:ENST00000511943.5:ENST00000505609.5:ENST00000504697.1:ENST00000513774.1:ENST00000507788.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	84	2	5.56987	5.757899999999999	5.94593	0.0101801	0.0029307	0.068447	0.0298918
chr10	75469812	75469912	4520856	0	+	0.5	(0.485,0.523]	chr10	432249	182	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.39369	5.7578	6.12191	0.0275819	6.58016e-4	0.112782	0.0106077
chr11	95905261	95905361	5109687	0	-	0.47	(0.45,0.485]	chr11	496500	166	INTRON	INTRON	MTMR2	ENSG00000087053.20	ENST00000675896.1:ENST00000346299.10:ENST00000675495.1:ENST00000676272.1:ENST00000675910.1:ENST00000393223.8:ENST00000676177.1:ENST00000675022.1:ENST00000675362.1:ENST00000674974.1:ENST00000675320.1:ENST00000675174.1:ENST00000674950.1:ENST00000674989.1:ENST00000675030.1:ENST00000676388.1:ENST00000675848.1:ENST00000675652.1:ENST00000676146.1:ENST00000675922.1:ENST00000676268.1:ENST00000675024.1:ENST00000675767.1:ENST00000676432.1:ENST00000676027.1:ENST00000675196.1:ENST00000675957.1:ENST00000675981.1:ENST00000674924.1:ENST00000676166.1:ENST00000676440.1:ENST00000675454.1:ENST00000674968.1:ENST00000676378.1:ENST00000675288.1:ENST00000675636.1:ENST00000675237.1:ENST00000674528.1:ENST00000675477.1:ENST00000674901.1:ENST00000675034.1:ENST00000676393.1:ENST00000675413.1:ENST00000675933.1:ENST00000675660.1:ENST00000674610.1:ENST00000409459.5:ENST00000352297.11:ENST00000675807.1:ENST00000675489.1:ENST00000676261.1:ENST00000481642.6:ENST00000495134.6:ENST00000484818.6:ENST00000470293.6:ENST00000497683.6:ENST00000444541.7:ENST00000470011.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	84	2	5.6428	5.7576149999999995	5.87243	0.0143887	0.00265386	0.0821732	0.027979
chr11	34987423	34987523	4840598	0	+	0.37	(0.36,0.39]	chr11	463100	23	INTRON	INTRON	PDHX	ENSG00000110435.13	ENST00000448838.8:ENST00000227868.9:ENST00000430469.6:ENST00000526309.1:ENST00000477173.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	88	2	5.24317	5.7572849999999995	6.2714	0.0433841	7.13729e-4	0.138813	0.0112151
chr9	4713496	4713596	4269905	0	-	0.35	(0.33,0.36]	chr9	407899	4	SS3_PROX	SS3_PROX:INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.15931	5.75721	6.35511	0.043896	4.93432e-4	0.139792	0.00865935
chr5	142796038	142796138	2556314	0	+	0.42	(0.419,0.45]	chr5	253988	228	INTRON	INTRON	ARHGAP26	ENSG00000145819.18	ENST00000274498.9:ENST00000645722.2:ENST00000642734.1:ENST00000378013.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	85	2	5.72351	5.757194999999999	5.79088	0.022052	0.00310292	0.101502	0.0311614
chr1	44310982	44311081	460288	0	-	0.494949	(0.485,0.523]	chr1	55336	22	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000452396.5:ENST00000495828.1:ENST00000457571.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	84	2	5.57523	5.7571449999999995	5.93906	0.0113657	0.00274261	0.0723462	0.028553
chr16	85586233	85586333	6518935	0	+	0.49	(0.485,0.523]	chr16	646396	295	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.57523	5.7571449999999995	5.93906	0.0113657	0.00274261	0.0723462	0.028553
chr6	158243893	158243993	3060954	0	+	0.34	(0.33,0.36]	chr6	297572	112	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	251	2	4.38554	5.757125	7.12871	0.00159605	2.83703e-4	0.0246766	0.00582407
chr2	101784220	101784320	861498	0	+	0.44	(0.419,0.45]	chr2	97528	853	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	1	192	2	4.67399	5.7563200000000005	6.83865	0.00404244	5.49805e-4	0.0412991	0.00936106
chr19	950099	950199	7185347	0	+	0.63	(0.58,1]	chr19	730741	170	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	752	2	5.18478	5.755735	6.32669	3.05065e-5	1.92129e-6	0.00310406	1.62066e-4
chr16	1726857	1726956	6371204	0	+	0.606061	(0.58,1]	chr16	628837	18	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000685565.1:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	80	2	5.47839	5.7555499999999995	6.03271	0.0145198	4.18183e-4	0.0823104	0.00770005
chr11	96295688	96295788	5113093	0	-	0.33	(0.29,0.33]	chr11	496566	2018	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	2	538	2	5.32911	5.75548	6.18185	9.86006e-5	5.27465e-5	0.00555628	0.00170883
chr3	31885413	31885513	1729445	0	-	0.54	(0.523,0.58]	chr3	179047	52	INTRON	INTRON	OSBPL10	ENSG00000144645.15	ENST00000396556.7:ENST00000438237.6:ENST00000480671.5:ENST00000485205.5:ENST00000467955.5:ENST00000466604.5:ENST00000479173.1:ENST00000463504.5:ENST00000452791.1:ENST00000465626.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	83	2	5.65959	5.755229999999999	5.85087	0.0132767	0.0021416	0.0787251	0.0240825
chr1	33256854	33256954	85399	0	+	0.63	(0.58,1]	chr1	9932	2	SS5_PROX	SS5_PROX:INTRON	ZNF362	ENSG00000160094.15	ENST00000539719.6:ENST00000483388.5:ENST00000490959.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	80	2	5.67642	5.755085	5.83375	0.00751249	0.00117039	0.0576451	0.0157899
chr12	132529881	132529981	5352914	0	+	0.65	(0.58,1]	chr12	523670	15	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.67642	5.755085	5.83375	0.00751249	0.00117039	0.0576451	0.0157899
chr17	17829173	17829272	6865815	0	-	0.242424	[0,0.29]	chr17	695923	52	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	1	208	2	4.68015	5.754995	6.82984	0.00158637	6.27252e-5	0.0245893	0.00193151
chr1	855249	855349	660	0	+	0.41	(0.39,0.419]	chr1	92	26	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	LINC01128	ENSG00000228794.11	ENST00000445118.7:ENST00000670780.1:ENST00000659124.2:ENST00000688309.1:ENST00000666741.1:ENST00000685764.1:ENST00000657837.1:ENST00000691316.1	lncRNA	lncRNA	lncRNA	lncRNA	0	91	2	5.26451	5.75496	6.24541	0.00955236	0.00800901	0.0658012	0.0580954
chr6	1870828	1870928	3081581	0	-	0.37	(0.36,0.39]	chr6	299482	1279	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	85	2	5.4536	5.75493	6.05626	0.0321864	0.00124043	0.121593	0.0165207
chr8	118035524	118035624	4048978	0	-	0.36	(0.33,0.36]	chr8	386022	184	INTRON	INTRON	EXT1	ENSG00000182197.13	ENST00000378204.7:ENST00000437196.1:ENST00000436216.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	87	2	5.25292	5.754875	6.25683	0.0384256	6.42061e-4	0.131324	0.0104165
chr13	42320605	42320703	5579247	0	+	0.346939	(0.33,0.36]	chr13	550311	15	UTR3	UTR3:EXON_MRNA	AKAP11	ENSG00000023516.9	ENST00000025301.4	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.66858	5.754475	5.84037	0.0156381	0.0028562	0.0850479	0.0294256
chr16	11789026	11789126	6549953	0	-	0.43	(0.419,0.45]	chr16	652048	61	INTRON	INTRON	ZC3H7A	ENSG00000122299.12	ENST00000355758.9:ENST00000571198.5:ENST00000575170.1:ENST00000576018.5:ENST00000572781.5:ENST00000574995.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	93	2	5.20508	5.75444	6.3038	0.00990101	0.00979452	0.0671959	0.0664239
chr2	72730506	72730606	1187246	0	-	0.43	(0.419,0.45]	chr2	128748	1	SS5_PROX	SS5_PROX:INTRON	EXOC6B	ENSG00000144036.16	ENST00000272427.11:ENST00000634650.1:ENST00000410104.1:ENST00000410112.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	85	2	5.52073	5.754390000000001	5.98805	0.0327198	0.00164584	0.122543	0.0202325
chr3	78996711	78996811	1837473	0	-	0.35	(0.33,0.36]	chr3	188611	574	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	1	256	2	5.01776	5.754385	6.49101	0.00154058	3.40831e-4	0.0242649	0.00667174
chr12	120998486	120998580	5341123	0	+	0.404255	(0.39,0.419]	chr12	521576	3	INTRON	INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000560968.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	197	2	5.09278	5.754255000000001	6.41573	0.00718148	1.56373e-4	0.056408	0.00380116
chr22	25620029	25620128	7702314	0	+	0.474747	(0.45,0.485]	chr22	806000	152	INTRON	INTRON	GRK3	ENSG00000100077.16	ENST00000324198.11:ENST00000455558.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	83	2	5.71659	5.75425	5.79191	0.018513	0.00183113	0.0928429	0.0216571
chr22	29828493	29828592	7784842	0	-	0.454545	(0.45,0.485]	chr22	816450	5	INTRON	INTRON	ASCC2	ENSG00000100325.15	ENST00000542393.5:ENST00000307790.8:ENST00000458594.5:ENST00000397771.6:ENST00000449900.6:ENST00000431535.5:ENST00000495967.5:ENST00000412689.5:ENST00000465667.6:ENST00000495681.5:ENST00000462454.1:ENST00000453160.5:ENST00000460313.1:ENST00000454854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	83	2	5.71659	5.75425	5.79191	0.018513	0.00183113	0.0928429	0.0216571
chr17	14027475	14027575	6858915	0	-	0.44	(0.419,0.45]	chr17	694957	1284	INTRON	INTRON	COX10-DT	ENSG00000236088.11	ENST00000582752.7:ENST00000690301.1:ENST00000662986.1:ENST00000686809.1:ENST00000686296.1:ENST00000602539.2:ENST00000602743.1	lncRNA	lncRNA	lncRNA	lncRNA	0	96	2	4.9329	5.7542	6.5755	0.0716557	3.64701e-4	0.168159	0.00699922
chr7	216460	216560	3305819	0	+	0.6	(0.58,1]	chr7	320161	71	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.16453	5.7542	6.34387	0.0249802	1.61506e-4	0.10758	0.00387712
chr7	29308941	29309041	3335435	0	+	0.39	(0.36,0.39]	chr7	322854	156	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5:ENST00000222792.11:ENST00000409350.5:ENST00000409964.6:ENST00000409922.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	87	2	5.28778	5.754165	6.22055	0.0407706	8.14665e-4	0.135868	0.0123172
chr7	110928346	110928446	3681344	0	-	0.43	(0.419,0.45]	chr7	354606	413	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000487733.5:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	85	2	5.68676	5.75406	5.82136	0.0210659	0.00338051	0.0996078	0.0328791
chr15	58714277	58714377	6279112	0	-	0.41	(0.39,0.419]	chr15	618755	65	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	85	2	5.61872	5.753489999999999	5.88826	0.0169925	0.00361685	0.0889149	0.0342681
chr8	99351421	99351521	3880600	0	+	0.4	(0.39,0.419]	chr8	371782	758	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000522802.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	84	2	5.66992	5.753415	5.83691	0.0237738	0.00215135	0.105296	0.0241566
chr12	120983367	120983466	5340964	0	+	0.555556	(0.523,0.58]	chr12	521546	39	INTRON	INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000400024.6:ENST00000560968.5:ENST00000402929.5:ENST00000535955.5:ENST00000538626.2:ENST00000538646.5:ENST00000541924.5:ENST00000544574.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	240	2	4.37937	5.75314	7.12691	0.00127326	2.15373e-4	0.0217367	0.00477041
chr11	12813723	12813823	4803039	0	+	0.59	(0.58,1]	chr11	460563	489	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	0	91	2	5.08534	5.75306	6.42078	0.00549379	0.00230938	0.0454065	0.0302623
chr10	112192151	112192251	4760708	0	-	0.36	(0.33,0.36]	chr10	455255	85	INTRON	INTRON	GPAM	ENSG00000119927.14	ENST00000480130.5:ENST00000498541.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	94	2	4.95163	5.753035	6.55444	0.0583482	2.86128e-4	0.155373	0.00586813
chr16	29269913	29270013	6433536	0	+	0.49	(0.485,0.523]	chr16	636745	178	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	2	273	2	3.57746	5.752975	7.92849	0.00224122	2.48243e-4	0.024843	0.00891635
chrX	2880061	2880159	7831336	0	+	0.285714	[0,0.29]	chrX	822236	24	INTRON	INTRON	GYG2	ENSG00000056998.20	ENST00000381163.7:ENST00000381161.5:ENST00000398806.8:ENST00000353656.10:ENST00000639373.1:ENST00000381157.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	84	2	5.25474	5.7529699999999995	6.2512	0.02298	3.56971e-4	0.102982	0.00688785
chr4	2813548	2813643	2000241	0	+	0.6	(0.58,1]	chr4	203927	7	INTRON	INTRON	SH3BP2	ENSG00000087266.17	ENST00000503219.5:ENST00000512131.5:ENST00000503393.8:ENST00000510074.5:ENST00000511237.5:ENST00000504294.5:ENST00000508385.5:ENST00000513020.5:ENST00000511663.5:ENST00000512014.5:ENST00000513095.5:ENST00000502260.5:ENST00000435136.8:ENST00000511185.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	83	2	5.21377	5.752915	6.29206	0.0230012	1.89825e-4	0.102982	0.0043642
chr9	134338935	134339035	4260812	0	+	0.62	(0.58,1]	chr9	406311	119	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	84	2	5.36153	5.7529	6.14427	0.00407804	0.00273899	0.0413652	0.028553
chr2	101729231	101729331	860948	0	+	0.36	(0.33,0.36]	chr2	97528	303	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	1	186	2	4.75564	5.75261	6.74958	0.00323839	3.6287e-4	0.0363368	0.00698402
chr18	77131238	77131338	7181635	0	-	0.63	(0.58,1]	chr18	730194	3	SS5_PROX	SS5_PROX:INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	85	2	5.31036	5.752280000000001	6.1942	0.00368616	0.00312721	0.0389784	0.0311915
chr9	123404588	123404688	4396606	0	-	0.6	(0.58,1]	chr9	419589	7	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	85	2	5.31036	5.752280000000001	6.1942	0.00368616	0.00312721	0.0389784	0.0311915
chr4	914168	914260	2178763	0	-	0.706522	(0.58,1]	chr4	220690	1	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000512325.3:ENST00000510022.5:ENST00000511229.5:ENST00000511983.5:ENST00000628912.1:ENST00000513935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	81	2	5.54978	5.75216	5.95454	0.0059453	0.00165911	0.0506158	0.0202545
chr7	892998	893078	3307714	0	+	0.6375	(0.58,1]	chr7	320474	2	INTRON	INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000407192.5:ENST00000464468.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	81	2	5.54978	5.75216	5.95454	0.0059453	0.00165911	0.0506158	0.0202545
chr2	112076791	112076891	877024	0	+	0.41	(0.39,0.419]	chr2	99029	2	SS3_PROX	SS3_PROX:INTRON	TMEM87B	ENSG00000153214.11	ENST00000283206.9:ENST00000650799.1:ENST00000452614.5:ENST00000452029.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	84	2	5.60095	5.751915	5.90288	0.0263614	0.00183094	0.110638	0.0216571
chr11	102183621	102183721	4930481	0	+	0.46	(0.45,0.485]	chr11	475101	207	INTRON	INTRON	YAP1	ENSG00000137693.14	ENST00000282441.10:ENST00000537274.5:ENST00000345877.6:ENST00000615667.4:ENST00000526343.5:ENST00000531439.5:ENST00000629586.2:ENST00000524575.5:ENST00000526594.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	190	2	5.11519	5.751835	6.38848	0.0059625	1.11073e-4	0.0506812	0.0029728
chr13	50730785	50730885	5599944	0	+	0.41	(0.39,0.419]	chr13	551734	44	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000652753.1:ENST00000650996.1	lncRNA	lncRNA	lncRNA	lncRNA	0	84	2	5.73575	5.751765000000001	5.76778	0.0215144	0.0025422	0.100612	0.0271978
chr11	61271419	61271504	5041289	0	-	0.552941	(0.523,0.58]	chr11	488752	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10:ENST00000535710.1:ENST00000398808.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	84	2	5.53665	5.751695	5.96674	0.0109075	0.00291382	0.0707085	0.0298557
chr4	150555822	150555922	2345617	0	-	0.58	(0.523,0.58]	chr4	234716	644	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000503716.5:ENST00000509835.5:ENST00000648626.1:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5:ENST00000513021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	84	2	5.53665	5.751695	5.96674	0.0109075	0.00291382	0.0707085	0.0298557
chr11	68337962	68338062	4882337	0	+	0.48	(0.45,0.485]	chr11	470542	248	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	88	2	5.33781	5.75166	6.16551	0.00879664	0.0054758	0.0630845	0.0454065
chr18	77118427	77118527	7181505	0	-	0.56	(0.523,0.58]	chr18	730186	128	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1:ENST00000583798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	88	2	5.30515	5.751445	6.19774	0.0072907	0.00509102	0.0567247	0.0433513
chr7	6703175	6703274	3542745	0	-	0.525253	(0.523,0.58]	chr7	342318	24	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	1	220	2	4.5068	5.751275	6.99575	0.0035839	4.88649e-5	0.0384108	0.00161739
chr9	121194017	121194116	4389692	0	-	0.363636	(0.36,0.39]	chr9	419042	2	INTRON	INTRON	RAB14	ENSG00000119396.11	ENST00000373840.9:ENST00000451303.1	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.56654	5.750935	5.93533	0.0272676	0.00167855	0.112327	0.0203806
chr15	32629862	32629962	6074147	0	+	0.33	(0.29,0.33]	chr15	596753	1	SS5_PROX	SS5_PROX:INTRON	ARHGAP11A	ENSG00000198826.11	ENST00000565905.5:ENST00000361627.8:ENST00000567348.5:ENST00000563864.5:ENST00000543522.5:ENST00000562481.1	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.52772	5.75088	5.97404	0.0096909	0.00324812	0.0661757	0.0319647
chr1	53307579	53307678	486638	0	-	0.494949	(0.485,0.523]	chr1	57941	111	INTRON	INTRON	LRP8	ENSG00000157193.18	ENST00000306052.12:ENST00000661457.1:ENST00000668448.1:ENST00000667377.1:ENST00000658277.1:ENST00000662198.1:ENST00000657895.1:ENST00000668071.1:ENST00000480045.6:ENST00000669432.1:ENST00000465675.6:ENST00000371454.6:ENST00000662604.1:ENST00000354412.7:ENST00000658404.1:ENST00000668991.1:ENST00000347547.7:ENST00000655704.1:ENST00000659993.1:ENST00000496580.1:ENST00000654634.1:ENST00000661359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	84	2	5.35167	5.750870000000001	6.15007	0.0294163	6.0909e-4	0.116079	0.0100377
chr8	80141057	80141157	4005799	0	-	0.39	(0.36,0.39]	chr8	382863	208	INTRON	INTRON	TPD52	ENSG00000076554.16	ENST00000518937.6:ENST00000379096.9:ENST00000519303.6:ENST00000521354.5:ENST00000518517.5:ENST00000521241.6:ENST00000523753.5:ENST00000519250.5:ENST00000520795.5:ENST00000521561.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	84	2	5.73251	5.75072	5.76893	0.0200694	0.0027486	0.0971995	0.028553
chr19	16853450	16853546	7217905	0	+	0.572917	(0.523,0.58]	chr19	737637	3	SS5_PROX	SS5_PROX:INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000596802.5:ENST00000596638.1	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.06957	5.750705	6.43184	0.0448011	2.62665e-4	0.140478	0.00552802
chrX	70466178	70466278	7902478	0	+	0.33	(0.29,0.33]	chrX	827704	97	INTRON	INTRON	DLG3	ENSG00000082458.12	ENST00000374360.8:ENST00000194900.8:ENST00000463252.5:ENST00000374355.7:ENST00000542398.1:ENST00000489733.5:ENST00000494493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	88	2	5.29626	5.75066	6.20506	0.00641163	0.005619	0.0529785	0.0462026
chr17	80691457	80691557	6810370	0	+	0.52	(0.485,0.523]	chr17	687822	473	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	92	2	4.96239	5.750635	6.53888	0.0518747	2.02788e-4	0.148503	0.0045746
chr3	184936435	184936535	1645792	0	+	0.38	(0.36,0.39]	chr3	173121	1	SS5_PROX	SS5_PROX:INTRON	VPS8	ENSG00000156931.16	ENST00000287546.8:ENST00000625842.3:ENST00000436792.6:ENST00000446204.6:ENST00000492449.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	189	2	4.58055	5.750545	6.92054	0.00289488	6.51031e-4	0.03418	0.0105193
chr1	20774307	20774407	414123	0	-	0.45	(0.419,0.45]	chr1	48419	8	UTR5	UTR5:EXON_MRNA:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5:ENST00000424732.5:ENST00000417710.5	protein_coding	protein_coding	protein_coding	protein_coding	3	767	2	5.44735	5.75049	6.05363	4.0677e-4	1.03834e-5	0.011556	5.28758e-4
chr11	72702704	72702804	5069935	0	-	0.46	(0.45,0.485]	chr11	493380	4	SS5_PROX	SS5_PROX:INTRON	ARAP1	ENSG00000186635.15	ENST00000359373.9:ENST00000393609.8:ENST00000465814.5:ENST00000334211.12:ENST00000393605.7:ENST00000426523.5:ENST00000429686.5:ENST00000427971.6:ENST00000452383.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	83	2	5.54186	5.7504	5.95894	0.0243502	0.00119342	0.106588	0.016037
chr2	55366511	55366610	1150980	0	-	0.434343	(0.419,0.45]	chr2	125865	21	INTRON	INTRON	CCDC88A	ENSG00000115355.18	ENST00000263630.13:ENST00000436346.7:ENST00000336838.10:ENST00000642200.1:ENST00000413716.7:ENST00000643413.1:ENST00000647401.1:ENST00000645311.1:ENST00000646796.1:ENST00000645571.1:ENST00000645477.1:ENST00000645072.1:ENST00000644890.1:ENST00000644630.1:ENST00000647098.1:ENST00000646324.1:ENST00000642890.1:ENST00000647517.1:ENST00000645031.1:ENST00000645484.1:ENST00000645529.1:ENST00000644033.1:ENST00000644193.1:ENST00000645168.1:ENST00000647341.1:ENST00000430086.1:ENST00000644127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	269	2	3.8098	5.750385	7.69097	0.00165174	8.81239e-4	0.0202545	0.0176886
chr2	25278009	25278107	1105339	0	-	0.612245	(0.58,1]	chr2	120762	21	INTRON	INTRON	DNMT3A	ENSG00000119772.19	ENST00000264709.7:ENST00000321117.10:ENST00000380756.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	80	2	5.63543	5.750170000000001	5.86491	0.00707578	0.00131165	0.0558168	0.0171898
chr1	48225689	48225787	120956	0	+	0.459184	(0.45,0.485]	chr1	15165	5	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	83	2	5.71928	5.750120000000001	5.78096	0.0166968	0.00219685	0.0884836	0.0245167
chr6	5717300	5717400	2836949	0	+	0.43	(0.419,0.45]	chr6	277888	1036	INTRON	INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000648580.1:ENST00000274680.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	85	2	5.64904	5.750120000000001	5.8512	0.0201381	0.00368884	0.0973365	0.0348088
chr6	138553810	138553910	3274686	0	-	0.39	(0.36,0.39]	chr6	316934	82	INTRON	INTRON	NHSL1	ENSG00000135540.12	ENST00000427025.6:ENST00000491526.6	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.33106	5.7494499999999995	6.16784	0.0383628	9.334e-4	0.131324	0.0135546
chr10	14603050	14603150	4633691	0	-	0.3	(0.29,0.33]	chr10	442818	2	SS3_PROX	SS3_PROX:INTRON	FAM107B	ENSG00000065809.14	ENST00000181796.7:ENST00000468747.5:ENST00000378467.8:ENST00000487335.5:ENST00000442012.5:ENST00000471815.5:ENST00000491458.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	82	2	5.62984	5.749385	5.86893	0.0174273	0.00137721	0.0901531	0.0178071
chr12	56167959	56168059	5435464	0	-	0.56	(0.523,0.58]	chr12	533870	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SMARCC2	ENSG00000139613.12	ENST00000550164.6:ENST00000394023.7:ENST00000347471.8:ENST00000267064.8:ENST00000552674.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	89	2	5.25403	5.749225	6.24442	0.00670944	0.00573579	0.0541591	0.0467736
chr2	3501991	3502091	1081945	0	-	0.56	(0.523,0.58]	chr2	117683	6	INTRON	INTRON	ADI1	ENSG00000182551.14	ENST00000327435.11:ENST00000382093.5	protein_coding	protein_coding	protein_coding	protein_coding	0	85	2	5.26332	5.74916	6.235	0.0337698	4.59688e-4	0.124319	0.00821903
chr12	69498636	69498736	5260926	0	+	0.54	(0.523,0.58]	chr12	513023	66	INTRON	INTRON	FRS2	ENSG00000166225.9	ENST00000547219.5:ENST00000550316.5:ENST00000547414.5:ENST00000548154.5:ENST00000549921.6:ENST00000550389.5:ENST00000550937.5:ENST00000549092.5:ENST00000550169.5	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.5868	5.749035	5.91127	0.020474	0.00111349	0.0979776	0.0152496
chr2	61930507	61930607	809481	0	+	0.37	(0.36,0.39]	chr2	91997	115	INTRON	INTRON	COMMD1	ENSG00000173163.11	ENST00000472729.1:ENST00000471704.1:ENST00000445644.5:ENST00000311832.6:ENST00000455659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	85	2	5.57948	5.74888	5.91828	0.0158902	0.00393844	0.0859576	0.0367306
chrX	1424030	1424130	7965723	0	-	0.53	(0.523,0.58]	chrX	834272	18	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.72487	5.74887	5.77287	0.0163679	0.00160162	0.0875379	0.0197827
chr13	46136039	46136138	5704729	0	-	0.474747	(0.45,0.485]	chr13	559738	14	INTRON	INTRON	LCP1	ENSG00000136167.15	ENST00000398576.6:ENST00000323076.7:ENST00000674665.1	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.43172	5.748705	6.06569	0.0104281	0.00440365	0.0687558	0.0393688
chr1	20750316	20750382	413878	0	-	0.439394	(0.419,0.45]	chr1	48389	2	SS3_PROX	SS3_PROX:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.35317	5.74869	6.14421	0.0127879	0.00714797	0.0769397	0.0541241
chr6	53840809	53840909	2928039	0	+	0.44	(0.419,0.45]	chr6	288340	450	INTRON	INTRON	LRRC1	ENSG00000137269.15	ENST00000487251.5:ENST00000370888.6:ENST00000370882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	90	2	5.30548	5.7485599999999994	6.19164	0.0118587	0.00792071	0.0740271	0.057762
chr12	53184190	53184290	5235162	0	+	0.63	(0.58,1]	chr12	508650	16	INTRON	INTRON	ZNF740	ENSG00000139651.11	ENST00000552593.1:ENST00000416904.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	79	2	5.66698	5.74831	5.82964	0.0102927	7.58111e-4	0.0684871	0.0117078
chr19	45362442	45362542	7387151	0	-	0.63	(0.58,1]	chr19	767057	4	INTRON	INTRON	ERCC2	ENSG00000104884.17	ENST00000391945.10:ENST00000682508.1:ENST00000684218.1:ENST00000684407.1:ENST00000684458.1:ENST00000682414.1:ENST00000646507.1:ENST00000391944.8:ENST00000391941.6:ENST00000587376.6:ENST00000485403.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	79	2	5.66698	5.74831	5.82964	0.0102927	7.58111e-4	0.0684871	0.0117078
chr4	10101022	10101121	2195660	0	-	0.666667	(0.58,1]	chr4	222412	15	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	79	2	5.66698	5.74831	5.82964	0.0102927	7.58111e-4	0.0684871	0.0117078
chr12	26468705	26468805	5397897	0	-	0.31	(0.29,0.33]	chr12	528476	247	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000451599.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	85	2	5.27054	5.74827	6.226	0.0308815	5.29368e-4	0.119556	0.0090868
chr10	35470331	35470430	4477017	0	+	0.525253	(0.523,0.58]	chr10	428126	145	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	85	2	5.44845	5.748185	6.04792	0.00948306	0.00361636	0.0656057	0.0342681
chr10	95358700	95358799	4733220	0	-	0.545455	(0.523,0.58]	chr10	451905	5	INTRON	INTRON	SORBS1	ENSG00000095637.23	ENST00000371227.8:ENST00000306402.10:ENST00000371249.6:ENST00000371247.7:ENST00000371246.6:ENST00000634504.1:ENST00000607232.5:ENST00000361941.7:ENST00000277982.9:ENST00000371245.7:ENST00000371241.5:ENST00000354106.7:ENST00000371239.5:ENST00000474353.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	110	2	4.68785	5.747705	6.80756	0.0194172	0.00236582	0.0994526	0.0306624
chr19	4492816	4492913	7193764	0	+	0.505155	(0.485,0.523]	chr19	732770	6	INTRON	INTRON	HDGFL2	ENSG00000167674.15	ENST00000616600.5:ENST00000621835.4:ENST00000589486.5:ENST00000615225.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	89	2	5.25048	5.747665	6.24485	0.00665813	0.0059614	0.0540577	0.0479866
chr9	39733046	39733146	4307073	0	-	0.49	(0.485,0.523]	chr9	411897	2	INTRON	INTRON	GLIDR	ENSG00000278175.5	ENST00000692061.1:ENST00000691877.1	lncRNA	lncRNA	lncRNA	lncRNA	0	89	2	5.25048	5.747665	6.24485	0.00665813	0.0059614	0.0540577	0.0479866
chr12	132534759	132534859	5352963	0	+	0.65	(0.58,1]	chr12	523670	64	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.59447	5.74751	5.90055	0.0117666	6.1741e-4	0.0737098	0.0101143
chr22	41615754	41615854	7817838	0	-	0.5	(0.485,0.523]	chr22	819943	75	INTRON	INTRON	DESI1	ENSG00000100418.8	ENST00000263256.7	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.58723	5.74746	5.90769	0.0203514	0.0011708	0.0979211	0.0157899
chr1	43981008	43981108	110966	0	+	0.64	(0.58,1]	chr1	13807	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	B4GALT2	ENSG00000117411.18	ENST00000498543.1:ENST00000434555.7:ENST00000372324.6:ENST00000481924.2:ENST00000497866.6:ENST00000485678.6:ENST00000356836.10:ENST00000309519.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	79	2	5.70191	5.74737	5.79283	0.00964351	8.4246e-4	0.0659937	0.0125912
chr8	96660619	96660719	3870081	0	+	0.42	(0.419,0.45]	chr8	371341	9	INTRON	INTRON	CPQ	ENSG00000104324.16	ENST00000220763.10:ENST00000519900.1:ENST00000517742.1	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.52959	5.7471700000000006	5.96475	0.0169309	0.00484244	0.088829	0.0418176
chr17	314839	314939	6821424	0	-	0.57	(0.523,0.58]	chr17	689582	83	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	231	2	4.79054	5.74705	6.70356	0.00205995	1.18392e-4	0.0285245	0.00311099
chr13	93952734	93952834	5625041	0	+	0.39	(0.36,0.39]	chr13	553064	1218	INTRON	INTRON	GPC6	ENSG00000183098.11	ENST00000377047.9	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	5.14958	5.747025000000001	6.34447	0.0493212	5.89187e-4	0.146207	0.00981079
chr3	50175784	50175881	1469161	0	+	0.556701	(0.523,0.58]	chr3	157432	2	INTRON	INTRON	SEMA3F	ENSG00000001617.12	ENST00000414301.5:ENST00000450338.5:ENST00000413852.5:ENST00000002829.8:ENST00000434342.5:ENST00000420831.1	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.01677	5.746945	6.47712	0.0482765	2.30436e-4	0.144601	0.00498593
chr17	15464364	15464463	6860078	0	-	0.545455	(0.523,0.58]	chr17	695067	109	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	220	2	4.00257	5.746905	7.49124	0.0092178	1.0301e-5	0.0644666	5.2504e-4
chr6	130929808	130929908	3260852	0	-	0.46	(0.45,0.485]	chr6	315557	27	INTRON	INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000528282.5:ENST00000392427.7:ENST00000368128.6:ENST00000527411.5:ENST00000525271.5:ENST00000529208.5:ENST00000525193.5:ENST00000527659.5:ENST00000639623.1:ENST00000530148.5:ENST00000528179.5:ENST00000526333.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	83	2	5.68155	5.746824999999999	5.8121	0.0158765	0.00241241	0.0859576	0.0261086
chr1	807230	807330	379582	0	-	0.55	(0.523,0.58]	chr1	42663	287	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000634337.2:ENST00000635509.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	82	2	5.73609	5.746755	5.75742	0.0155135	0.0017613	0.0849828	0.0211077
chr1	43424116	43424216	106296	0	+	0.58	(0.523,0.58]	chr1	12952	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SZT2	ENSG00000198198.17	ENST00000562955.2:ENST00000634258.3:ENST00000470139.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	82	2	5.73609	5.746755	5.75742	0.0155135	0.0017613	0.0849828	0.0211077
chr19	37779145	37779244	7375355	0	-	0.545455	(0.523,0.58]	chr19	764630	2	SS5_PROX	SS5_PROX:INTRON	ZNF573	ENSG00000189144.15	ENST00000589632.5:ENST00000392138.5:ENST00000536220.7:ENST00000586155.5:ENST00000585724.5:ENST00000378445.8:ENST00000591516.6:ENST00000588218.1:ENST00000494605.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	82	2	5.73609	5.746755	5.75742	0.0155135	0.0017613	0.0849828	0.0211077
chr18	77018177	77018277	7180496	0	-	0.57	(0.523,0.58]	chr18	730157	5	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000580402.5:ENST00000580473.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000495162.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	100	2	4.90222	5.74606	6.5899	0.0125132	0.00356891	0.0765738	0.0383188
chr19	6228884	6228983	7321300	0	-	0.737374	(0.58,1]	chr19	756087	14	INTRON	INTRON	MLLT1	ENSG00000130382.9	ENST00000252674.9	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.55681	5.745775	5.93474	0.0126042	5.58693e-4	0.0761905	0.00944382
chr7	47348050	47348150	3587271	0	-	0.48	(0.45,0.485]	chr7	346030	13	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	185	2	4.4494	5.7456	7.0418	0.00179449	7.63833e-4	0.0262815	0.0117723
chr10	79166228	79166328	4533019	0	+	0.6	(0.58,1]	chr10	432438	37	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.73602	5.74554	5.75506	0.00904546	9.38062e-4	0.0637469	0.0135546
chr22	20123855	20123949	7686881	0	+	0.606383	(0.58,1]	chr22	804213	8	INTRON	INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000331821.7:ENST00000411892.5:ENST00000423859.5:ENST00000418705.2:ENST00000448394.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	198	2	4.51752	5.7453199999999995	6.97312	0.00209278	2.07776e-5	0.0287557	8.62032e-4
chr7	66396356	66396456	3594373	0	-	0.5	(0.485,0.523]	chr7	346741	4	SS3_PROX	SS3_PROX:INTRON	LINC00174	ENSG00000179406.9	ENST00000421767.1:ENST00000638517.1:ENST00000640964.1	lncRNA	lncRNA	lncRNA	lncRNA	1	179	2	4.65178	5.745265	6.83875	0.00220993	3.84341e-4	0.0295736	0.00726694
chr4	113506835	113506935	2311875	0	-	0.48	(0.45,0.485]	chr4	232395	14	INTRON	INTRON	CAMK2D	ENSG00000145349.18	ENST00000683023.1:ENST00000296402.9:ENST00000511664.6:ENST00000394524.7:ENST00000513132.5:ENST00000342666.9:ENST00000514328.5:ENST00000515496.5:ENST00000394522.7:ENST00000505990.5:ENST00000379773.6:ENST00000508738.5:ENST00000509594.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	182	2	4.69118	5.74519	6.7992	0.00282996	3.85858e-4	0.033746	0.00727473
chr1	1340603	1340703	381182	0	-	0.56	(0.523,0.58]	chr1	43161	1	SS3_PROX	SS3_PROX:INTRON	DVL1	ENSG00000107404.21	ENST00000378891.9:ENST00000378888.10	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	5.39327	5.745025	6.09678	0.0277354	6.74499e-4	0.112851	0.0108081
chr2	163711002	163711102	1296072	0	-	0.34	(0.33,0.36]	chr2	139073	988	INTRON	INTRON	FIGN	ENSG00000182263.14	ENST00000409634.5:ENST00000333129.4:ENST00000482917.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	84	2	5.59003	5.744745	5.89946	0.0142052	0.00344516	0.0816536	0.0333853
chr16	10577648	10577748	6547730	0	-	0.6	(0.58,1]	chr16	651717	186	INTRON	INTRON	EMP2	ENSG00000213853.10	ENST00000359543.8:ENST00000342147.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	100	2	4.81862	5.744540000000001	6.67046	0.0102696	0.00135763	0.0678072	0.0224546
chr9	105336099	105336199	4206514	0	+	0.37	(0.36,0.39]	chr9	399499	4	SS5_PROX	SS5_PROX:INTRON	SLC44A1	ENSG00000070214.16	ENST00000374724.1:ENST00000374723.5:ENST00000470972.5:ENST00000374720.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	90	2	5.26508	5.744540000000001	6.224	0.00967792	0.00795848	0.0661428	0.0578938
chr9	134340931	134341031	4260832	0	+	0.59	(0.58,1]	chr9	406311	139	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	80	2	5.59324	5.744325	5.89541	0.0066708	0.0014734	0.0540577	0.0185589
chr20	25494487	25494586	7539898	0	-	0.585859	(0.58,1]	chr20	787018	26	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5:ENST00000461642.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	264	2	4.15207	5.744315	7.33656	3.07185e-4	1.25421e-4	0.00996904	0.00324461
chrX	130222274	130222374	8102196	0	-	0.46	(0.45,0.485]	chrX	844940	14	INTRON	INTRON	ZNF280C	ENSG00000056277.16	ENST00000370978.9:ENST00000447817.1	protein_coding	protein_coding	protein_coding	protein_coding	1	184	2	4.48652	5.744185	7.00185	0.00193567	6.88779e-4	0.0275437	0.0109212
chrX	48987977	48988020	8041225	0	-	0.55814	(0.523,0.58]	chrX	838891	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GRIPAP1	ENSG00000068400.13	ENST00000376423.8:ENST00000622599.4:ENST00000593475.5:ENST00000611757.4:ENST00000473581.5:ENST00000474512.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	82	2	5.51247	5.744135	5.9758	0.0230387	9.36996e-4	0.102982	0.0135546
chr3	78903524	78903624	1836539	0	-	0.38	(0.36,0.39]	chr3	188602	1563	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	1	229	2	4.38528	5.743975	7.10267	0.00575055	7.25586e-5	0.0499659	0.00216169
chr14	74477092	74477188	6007282	0	-	0.5625	(0.523,0.58]	chr14	589464	1	INTRON	INTRON	NPC2	ENSG00000119655.11	ENST00000434013.6	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.49322	5.743765	5.99431	0.0104033	0.00324246	0.0686837	0.0319521
chr16	1528378	1528477	6533132	0	-	0.525253	(0.523,0.58]	chr16	649069	12	INTRON	INTRON	IFT140	ENSG00000187535.14	ENST00000426508.7:ENST00000361339.9:ENST00000397417.6:ENST00000565298.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	84	2	5.49322	5.743765	5.99431	0.0104033	0.00324246	0.0686837	0.0319521
chr4	152527874	152527974	2355571	0	-	0.38	(0.36,0.39]	chr4	235300	381	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.40829	5.743755	6.07922	0.0122748	0.00581205	0.0755611	0.0472624
chr2	53898554	53898654	1146967	0	-	0.41	(0.39,0.419]	chr2	125266	2	SS3_PROX	SS3_PROX:INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	87	2	5.24182	5.7437249999999995	6.24563	0.0441194	7.69256e-4	0.140174	0.0118331
chr11	64143865	64143965	5049016	0	-	0.41	(0.39,0.419]	chr11	490257	171	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	84	2	5.49088	5.74369	5.9965	0.0309972	0.00145172	0.119758	0.0184691
chr3	17284016	17284115	1700188	0	-	0.434343	(0.419,0.45]	chr3	177650	251	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000429924.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	84	2	5.72794	5.743650000000001	5.75936	0.0242188	0.00285253	0.106588	0.0294017
chr1	183071075	183071175	300343	0	+	0.33	(0.29,0.33]	chr1	34079	466	INTRON	INTRON	LAMC1	ENSG00000135862.6	ENST00000258341.5	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.51972	5.743270000000001	5.96682	0.0208628	0.00106564	0.0991037	0.0148659
chr14	57238177	57238268	5989007	0	-	0.32967	(0.29,0.33]	chr14	587422	1	INTRON	INTRON	EXOC5	ENSG00000070367.16	ENST00000621441.5:ENST00000413566.6:ENST00000340918.11:ENST00000555148.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	82	2	5.51972	5.743270000000001	5.96682	0.0208628	0.00106564	0.0991037	0.0148659
chr12	132530279	132530379	5352918	0	+	0.62	(0.58,1]	chr12	523670	19	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.71628	5.74281	5.76934	0.00849371	0.00104668	0.0617717	0.0146403
chr6	128485431	128485531	3256823	0	-	0.35	(0.33,0.36]	chr6	315223	757	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000524534.5:ENST00000495748.5:ENST00000525459.1:ENST00000392449.4:ENST00000532751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	83	2	5.53966	5.742794999999999	5.94593	0.0251076	0.00143977	0.107672	0.0183435
chr20	36859273	36859373	7557094	0	-	0.51	(0.485,0.523]	chr20	789156	3	SS5_PROX	SS5_PROX:INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.69477	5.74222	5.78967	0.0146211	0.00203227	0.0826064	0.0232814
chr15	99602209	99602309	6198703	0	+	0.51	(0.485,0.523]	chr15	609963	1	SS5_PROX	SS5_PROX:INTRON	MEF2A	ENSG00000068305.18	ENST00000560493.5:ENST00000354410.9:ENST00000558812.5:ENST00000558856.5:ENST00000685785.1:ENST00000559036.5:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000558049.5:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1:ENST00000559903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	84	2	5.48966	5.7422	5.99474	0.0103305	0.0033837199999999998	0.0684871	0.0328791
chr17	38746367	38746467	6895639	0	-	0.56	(0.523,0.58]	chr17	700403	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000611883.4:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	1	216	2	4.34083	5.742165	7.1435	0.00492048	3.0928e-5	0.0458505	0.00115425
chr10	18567960	18568060	4642408	0	-	0.41	(0.39,0.419]	chr10	443321	156	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	228	2	4.22287	5.74216	7.26145	0.00778306	4.63445e-5	0.0590114	0.00155699
chr2	239080094	239080194	1389471	0	-	0.51	(0.485,0.523]	chr2	148587	108	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000494800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	240	2	4.44534	5.741375	7.03741	0.0015038	1.82432e-4	0.0239138	0.00423714
chr13	113610195	113610295	5659102	0	+	0.54	(0.523,0.58]	chr13	555775	240	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	87	2	5.1205	5.740819999999999	6.36114	0.0416463	3.21725e-4	0.136301	0.0063695
chr10	102647118	102647217	4576495	0	+	0.585859	(0.58,1]	chr10	437280	9	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	266	2	3.94301	5.740335	7.53766	0.00277655	2.94146e-6	0.03335	2.17062e-4
chr5	119531600	119531699	2518756	0	+	0.323232	(0.29,0.33]	chr5	250206	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	HSD17B4	ENSG00000133835.18	ENST00000683936.1:ENST00000509514.6:ENST00000682996.1:ENST00000684214.1:ENST00000683974.1:ENST00000414835.7:ENST00000442060.7:ENST00000510025.7:ENST00000515320.5:ENST00000646058.1:ENST00000682445.1:ENST00000515235.6:ENST00000518349.6:ENST00000683371.1:ENST00000683390.1:ENST00000645832.1:ENST00000644146.1:ENST00000646355.1:ENST00000647335.1:ENST00000682531.1:ENST00000683265.1:ENST00000646554.1:ENST00000684160.1:ENST00000682626.1:ENST00000647342.1:ENST00000643250.1:ENST00000645099.1:ENST00000684131.1:ENST00000513628.5:ENST00000683549.1:ENST00000645702.1:ENST00000683996.1:ENST00000683372.1:ENST00000522415.5:ENST00000683335.1:ENST00000683476.1:ENST00000509951.5:ENST00000509606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	231	2	5.69884	5.73981	5.78078	0.0155382	1.26979e-5	0.0849828	6.1e-4
chr21	33236647	33236747	7609135	0	+	0.58	(0.523,0.58]	chr21	794612	57	INTRON	INTRON	IFNAR2	ENSG00000159110.21	ENST00000683941.1:ENST00000382264.7:ENST00000342136.9:ENST00000404220.7:ENST00000420068.1:ENST00000342101.7:ENST00000382238.6:ENST00000413881.5:ENST00000443073.5:ENST00000447980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	86	2	5.35452	5.73965	6.12478	0.00829271	0.00453096	0.0610772	0.0400651
chr6	35494100	35494200	3125636	0	-	0.52	(0.485,0.523]	chr6	304825	70	INTRON	INTRON	TEAD3	ENSG00000007866.22	ENST00000338863.13:ENST00000402886.9:ENST00000639578.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	182	2	5.02096	5.739445	6.45793	0.00452302	1.27893e-4	0.0436138	0.00328053
chr8	38770692	38770792	3802262	0	+	0.42	(0.419,0.45]	chr8	365828	129	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	190	2	4.73243	5.739405	6.74638	0.00473615	4.69186e-4	0.0449264	0.00833075
chr21	8809768	8809868	7637413	0	-	0.61	(0.58,1]	chr21	798930	22	INTRON	INTRON	ENSG00000286033	ENSG00000286033.1	ENST00000651312.1	lncRNA	lncRNA	lncRNA	lncRNA	0	79	2	5.67642	5.73916	5.8019	0.007984	0.00117039	0.0596361	0.0157899
chr21	41829031	41829131	7673612	0	-	0.51	(0.485,0.523]	chr21	801978	3	INTRON	INTRON	PRDM15	ENSG00000141956.14	ENST00000422911.6:ENST00000441787.5:ENST00000449395.6:ENST00000398548.6:ENST00000447016.6:ENST00000269844.5:ENST00000491486.5:ENST00000489661.5:ENST00000496124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	82	2	5.47425	5.73883	6.00341	0.0243396	9.07333e-4	0.106588	0.0132726
chr18	48846211	48846311	7059740	0	+	0.42	(0.419,0.45]	chr18	720358	285	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000587860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	84	2	5.68676	5.73882	5.79088	0.022052	0.00338051	0.101502	0.0328791
chr3	45003295	45003391	1457671	0	+	0.510417	(0.485,0.523]	chr3	155643	12	INTRON	INTRON	EXOSC7	ENSG00000075914.13	ENST00000461361.5:ENST00000482004.5:ENST00000265564.8:ENST00000468667.5:ENST00000491476.5:ENST00000481405.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	178	2	4.74937	5.738745	6.72812	0.00272951	2.8864e-4	0.0331786	0.00590733
chr6	24270153	24270253	3109444	0	-	0.45	(0.419,0.45]	chr6	301412	647	INTRON	INTRON	DCDC2	ENSG00000146038.12	ENST00000378454.8	protein_coding	protein_coding	protein_coding	protein_coding	1	255	2	3.4957	5.73858	7.98146	0.0102234	5.14e-4	0.0678072	0.01319
chr11	96252194	96252294	5112658	0	-	0.33	(0.29,0.33]	chr11	496566	1583	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	1	276	2	5.36045	5.73848	6.11651	7.13924e-4	5.74693e-4	0.0140419	0.0112151
chr5	139138073	139138173	2772088	0	-	0.51	(0.485,0.523]	chr5	272010	2	INTRON	INTRON	SIL1	ENSG00000120725.13	ENST00000394817.7:ENST00000265195.9:ENST00000509534.5:ENST00000508639.5:ENST00000507002.5:ENST00000505830.5:ENST00000505353.1:ENST00000504666.5:ENST00000509400.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	82	2	5.65601	5.73841	5.82081	0.0138807	0.00224147	0.0804838	0.024843
chr11	82992670	82992770	5102222	0	-	0.51	(0.485,0.523]	chr11	495607	222	INTRON	INTRON	ENSG00000254698	ENSG00000254698.1	ENST00000527550.1	lncRNA	lncRNA	lncRNA	lncRNA	0	91	2	5.14248	5.738185	6.33389	0.00761903	0.00567224	0.0561937	0.0496143
chr9	123256746	123256846	4396230	0	-	0.48	(0.45,0.485]	chr9	419553	194	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	82	2	5.64922	5.73806	5.8269	0.020599	0.00167585	0.0982852	0.0203806
chr10	75469612	75469712	4520854	0	+	0.54	(0.523,0.58]	chr10	432249	180	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	480	2	5.01184	5.73795	6.46406	0.00132514	1.15827e-6	0.0222181	1.14833e-4
chr4	3364692	3364792	2005083	0	+	0.48	(0.45,0.485]	chr4	204663	213	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	83	2	5.60298	5.737705	5.87243	0.0143887	0.00292492	0.0821732	0.029882
chr16	953042	953142	6531563	0	-	0.57	(0.523,0.58]	chr16	648704	4	SS3_PROX	SS3_PROX:INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1:ENST00000566609.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	83	2	5.53665	5.7376450000000006	5.93864	0.0114442	0.00291382	0.0723462	0.0298557
chr6	108351098	108351197	2973209	0	+	0.414141	(0.39,0.419]	chr6	291557	37	INTRON	INTRON	AFG1L	ENSG00000135537.17	ENST00000368977.9:ENST00000421954.5:ENST00000437715.1	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	4.99538	5.7375799999999995	6.47978	0.0613573	4.14458e-4	0.158506	0.00767522
chr7	1009449	1009549	3526317	0	-	0.71	(0.58,1]	chr7	340567	1	SS5_PROX	SS5_PROX:INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	80	2	5.54978	5.73753	5.92528	0.0062948	0.00165911	0.0523832	0.0202545
chr19	6720180	6720280	7322989	0	-	0.45	(0.419,0.45]	chr19	756568	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695652.1:ENST00000594936.2:ENST00000695693.1:ENST00000600744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	255	2	4.17988	5.73726	7.29464	0.00181153	6.1411e-4	0.0264638	0.0101036
chr4	4438909	4439009	2184980	0	-	0.34	(0.33,0.36]	chr4	221822	4	SS3_PROX	SS3_PROX:INTRON	STX18	ENSG00000168818.10	ENST00000505286.5:ENST00000306200.7:ENST00000503861.5:ENST00000512195.5:ENST00000507908.5:ENST00000512780.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	85	2	5.46355	5.7372	6.01085	0.011821	0.00462971	0.0739406	0.0408278
chr2	102143120	102143220	863819	0	+	0.49	(0.485,0.523]	chr2	97796	1	SS5_PROX	SS5_PROX:INTRON	IL1R1	ENSG00000115594.12	ENST00000452403.5:ENST00000409929.5:ENST00000424272.5:ENST00000409589.5:ENST00000409329.5:ENST00000450319.5:ENST00000428279.5:ENST00000442590.5:ENST00000410023.6:ENST00000409288.5	protein_coding	protein_coding	protein_coding	protein_coding	1	178	2	4.7958	5.73689	6.67798	0.00300122	2.51583e-4	0.0348875	0.00534704
chr3	78981815	78981915	1837324	0	-	0.42	(0.419,0.45]	chr3	188611	425	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	2	338	2	4.272	5.73687	7.20174	0.00363922	6.47219e-5	0.0388678	0.00198064
chr6	169671755	169671854	3304606	0	-	0.525253	(0.523,0.58]	chr6	319945	9	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	303	2	4.18318	5.73672	7.29026	0.00284982	1.95191e-5	0.0338605	8.25524e-4
chr4	103065112	103065211	2296074	0	-	0.363636	(0.36,0.39]	chr4	230898	68	INTRON	INTRON	SLC9B2	ENSG00000164038.16	ENST00000362026.7:ENST00000394785.9:ENST00000503103.5:ENST00000503230.5:ENST00000515424.5:ENST00000503818.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	83	2	5.6023	5.73657	5.87084	0.0258522	0.00196738	0.109555	0.022768300000000002
chr3	149180162	149180257	1939229	0	-	0.505263	(0.485,0.523]	chr3	197325	1	INTRON	INTRON	CP	ENSG00000047457.14	ENST00000481169.5:ENST00000264613.11:ENST00000494544.1:ENST00000490639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	85	2	5.39869	5.736560000000001	6.07443	0.00899749	0.00421243	0.0637469	0.0380601
chr1	111732512	111732611	561724	0	-	0.454545	(0.45,0.485]	chr1	64444	43	INTRON	INTRON	INKA2	ENSG00000197852.12	ENST00000527570.1:ENST00000357260.6:ENST00000534365.1:ENST00000444059.2:ENST00000527621.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	82	2	5.57854	5.736485	5.89443	0.0230065	0.00141013	0.102982	0.0180659
chr8	28919945	28920045	3785779	0	+	0.39	(0.36,0.39]	chr8	364673	278	INTRON	INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000558662.5:ENST00000519662.5:ENST00000397358.7:ENST00000560599.5:ENST00000523613.5:ENST00000560357.5:ENST00000521516.5:ENST00000519047.5:ENST00000560269.1:ENST00000355231.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	83	2	5.70457	5.73646	5.76835	0.022152	0.00252253	0.101784	0.0270357
chr20	33660795	33660895	7546030	0	-	0.43	(0.419,0.45]	chr20	787634	4	SS3_PROX	SS3_PROX:INTRON	NECAB3	ENSG00000125967.17	ENST00000375238.8:ENST00000246190.11:ENST00000488489.5:ENST00000606525.5:ENST00000483813.5:ENST00000485399.5:ENST00000485976.5:ENST00000478237.5:ENST00000494174.5:ENST00000463246.5:ENST00000480994.5:ENST00000606690.5:ENST00000439478.5:ENST00000607805.5:ENST00000498353.5:ENST00000493590.1:ENST00000606106.1:ENST00000606699.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	205	2	5.23513	5.73634	6.23755	0.0110181	1.15241e-4	0.0708586	0.00305177
chr1	44242380	44242480	459596	0	-	0.47	(0.45,0.485]	chr1	55306	3	SS3_PROX	SS3_PROX:INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	82	2	5.71659	5.73632	5.75605	0.018513	0.002004	0.0928429	0.0230381
chr6	63658470	63658570	2934490	0	+	0.28	[0,0.29]	chr6	288800	113	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	81	2	5.3888	5.736219999999999	6.08364	0.0183035	5.75832e-4	0.0922556	0.00963379
chr5	108025698	108025798	2736241	0	-	0.5	(0.485,0.523]	chr5	268851	43	INTRON	INTRON	FBXL17	ENSG00000145743.18	ENST00000542267.7:ENST00000496714.2:ENST00000481160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	83	2	5.53308	5.73607	5.93906	0.0113657	0.00304306	0.0723462	0.0306636
chr8	89909466	89909566	3855426	0	+	0.23	[0,0.29]	chr8	370048	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	OSGIN2	ENSG00000164823.11	ENST00000647849.1:ENST00000297438.6:ENST00000451899.7:ENST00000520659.1	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.51146	5.7357499999999995	5.96004	0.0147753	8.12684e-4	0.0829204	0.0123039
chr6	43304480	43304570	2919188	0	+	0.466667	(0.45,0.485]	chr6	287083	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC22A7	ENSG00000137204.15	ENST00000372585.10:ENST00000372589.7	protein_coding	protein_coding	protein_coding	protein_coding	0	85	2	5.43172	5.735665	6.03961	0.0108974	0.00440365	0.0707085	0.0393688
chr16	47163862	47163962	6582818	0	-	0.4	(0.39,0.419]	chr16	658281	8	INTRON	INTRON	ITFG1	ENSG00000129636.13	ENST00000568047.5:ENST00000320640.11:ENST00000537184.6:ENST00000542691.5:ENST00000567957.1:ENST00000544001.6:ENST00000565262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	83	2	5.60095	5.735609999999999	5.87027	0.0263614	0.00198333	0.110638	0.0229039
chr2	11483479	11483579	719695	0	+	0.57	(0.523,0.58]	chr2	84084	7	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000628795.2	protein_coding	protein_coding	protein_coding	protein_coding	5	858	2	5.08239	5.735575000000001	6.38876	7.48503e-5	6.63767e-6	0.00484235	3.85462e-4
chr11	70741485	70741585	5061696	0	-	0.53	(0.523,0.58]	chr11	492701	236	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	183	2	4.34417	5.73554	7.12691	0.00127326	9.01636e-4	0.0217367	0.0132389
chr15	82829606	82829704	6166958	0	+	0.44898	(0.419,0.45]	chr15	606979	24	INTRON	INTRON	WHAMM	ENSG00000156232.7	ENST00000286760.5	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.25615	5.735465	6.21478	0.011428	0.00879729	0.0723462	0.0615125
chr4	3179237	3179334	2003660	0	+	0.43299	(0.419,0.45]	chr4	204462	4	INTRON	INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000680291.1:ENST00000510626.5:ENST00000509043.1:ENST00000513326.5:ENST00000513639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	84	2	5.64904	5.735200000000001	5.82136	0.0210659	0.00368884	0.0996078	0.0348088
chr14	39312839	39312939	5792649	0	+	0.39	(0.36,0.39]	chr14	567569	1	SS3_PROX	SS3_PROX:INTRON	MIA2	ENSG00000150527.18	ENST00000553728.1:ENST00000640607.2:ENST00000341749.7:ENST00000557038.5:ENST00000396165.8:ENST00000396158.6:ENST00000280083.7:ENST00000341502.9:ENST00000556148.5:ENST00000348007.7:ENST00000553352.1	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.4139	5.73508	6.05626	0.0340874	0.00124043	0.125059	0.0165207
chr12	132780297	132780397	5540254	0	-	0.62	(0.58,1]	chr12	546770	1	SS5_PROX	SS5_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	81	2	5.45872	5.73503	6.01134	0.00531709	0.00211999	0.047841	0.0239744
chr9	134340432	134340532	4260827	0	+	0.6	(0.58,1]	chr9	406311	134	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	174	2	4.28568	5.734995	7.18431	7.30957e-4	4.34792e-4	0.0119405	0.0113963
chr15	98732220	98732319	6194167	0	+	0.565657	(0.523,0.58]	chr15	609659	238	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	84	2	5.44845	5.73491	6.02137	0.00992924	0.00361636	0.0671959	0.0342681
chr19	7119883	7119983	7323448	0	-	0.37	(0.36,0.39]	chr19	756715	3	SS3_PROX	SS3_PROX:INTRON	INSR	ENSG00000171105.14	ENST00000341500.9:ENST00000302850.10	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	5.73251	5.73481	5.73711	0.0210765	0.0027486	0.0996078	0.028553
chr22	19422225	19422324	7763478	0	-	0.383838	(0.36,0.39]	chr22	813787	111	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	83	2	5.73251	5.73481	5.73711	0.0210765	0.0027486	0.0996078	0.028553
chr16	85542071	85542171	6518492	0	+	0.6	(0.58,1]	chr16	646391	1828	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	96	2	4.89007	5.734769999999999	6.57947	0.00872525	0.00165065	0.0612699	0.0250898
chr8	122788745	122788845	3909723	0	+	0.5	(0.485,0.523]	chr8	373449	64	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6	protein_coding	protein_coding	protein_coding	protein_coding	2	319	2	4.41566	5.734355	7.05305	0.0017825	4.35721e-5	0.0262524	0.00149008
chr3	65419337	65419437	1809643	0	-	0.34	(0.33,0.36]	chr3	187193	175	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5	protein_coding	protein_coding	protein_coding	protein_coding	1	184	2	4.56666	5.734254999999999	6.90185	0.00244473	6.15411e-4	0.0311837	0.0101143
chr12	132532669	132532768	5352942	0	+	0.656566	(0.58,1]	chr12	523670	43	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	164	2	4.78022	5.734105	6.68799	0.00130716	1.55453e-4	0.0220198	0.00378153
chr2	240625868	240625968	1075202	0	+	0.63	(0.58,1]	chr2	116657	3	SS5_PROX	SS5_PROX:INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2:ENST00000407714.2	protein_coding	protein_coding	protein_coding	protein_coding	1	169	2	4.42609	5.73385	7.04161	5.99793e-4	4.76485e-4	0.0143535	0.008444
chr3	128497562	128497661	1563272	0	+	0.626263	(0.58,1]	chr3	165335	3	INTRON	INTRON	GATA2-AS1	ENSG00000244300.3	ENST00000468377.1:ENST00000669945.1	lncRNA	lncRNA	lncRNA	lncRNA	0	89	2	4.88945	5.733835	6.57822	0.0388928	7.66421e-5	0.131324	0.00224403
chr6	35493900	35494000	3125634	0	-	0.58	(0.523,0.58]	chr6	304825	68	INTRON	INTRON	TEAD3	ENSG00000007866.22	ENST00000338863.13:ENST00000402886.9:ENST00000639578.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	179	2	4.95186	5.7338000000000005	6.51574	0.00409625	1.5208e-4	0.0413652	0.00371617
chr7	101466785	101466885	3433032	0	+	0.49	(0.485,0.523]	chr7	332437	186	INTRON	INTRON	COL26A1	ENSG00000160963.14	ENST00000313669.12:ENST00000613501.1	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.61619	5.733745	5.8513	0.0131886	0.00247695	0.0785398	0.0266492
chr15	25017871	25017969	6064032	0	+	0.408163	(0.39,0.419]	chr15	595414	28	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	0	84	2	5.57892	5.7335899999999995	5.88826	0.0169925	0.00396694	0.0889149	0.0368027
chr6	137869028	137869127	3010377	0	+	0.515152	(0.485,0.523]	chr6	294494	9	INTRON	INTRON	TNFAIP3	ENSG00000118503.16	ENST00000421450.1:ENST00000612899.5:ENST00000420009.5:ENST00000237289.8:ENST00000433680.1	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.44489	5.733345	6.0218	0.00985907	0.00377098	0.0670775	0.0353672
chr16	85231765	85231865	6515386	0	+	0.39	(0.36,0.39]	chr16	646377	40	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	89	2	5.26508	5.732965	6.20085	0.0100561	0.00795848	0.0677306	0.0578938
chr16	85226503	85226602	6515333	0	+	0.565657	(0.523,0.58]	chr16	646373	413	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	5.08882	5.73241	6.376	0.00834774	0.00529293	0.0598672	0.047841
chr7	158920429	158920526	3523195	0	+	0.525773	(0.523,0.58]	chr7	340299	12	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	92	2	5.08882	5.73241	6.376	0.00834774	0.00529293	0.0598672	0.047841
chr20	61970787	61970887	7582822	0	-	0.57	(0.523,0.58]	chr20	792262	166	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000474089.5	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	5.5868	5.73235	5.8779	0.020474	0.00121652	0.0979776	0.0162693
chr6	131241572	131241672	3006372	0	+	0.38	(0.36,0.39]	chr6	293985	214	INTRON	INTRON	AKAP7	ENSG00000118507.18	ENST00000431975.7:ENST00000683794.1:ENST00000541650.5:ENST00000535150.1:ENST00000537868.5:ENST00000263050.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	83	2	5.69574	5.732335	5.76893	0.0200694	0.00299965	0.0971995	0.030427
chr11	65086133	65086226	4869639	0	+	0.537634	(0.523,0.58]	chr11	467665	9	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ZFPL1	ENSG00000162300.13	ENST00000650243.1:ENST00000294258.8:ENST00000531761.5:ENST00000453524.6:ENST00000526334.5:ENST00000526440.1:ENST00000526945.5:ENST00000532200.1:ENST00000530488.1:ENST00000530744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	81	2	5.69157	5.73222	5.77287	0.0172851	0.00160162	0.0897247	0.0197827
chr2	3289812	3289912	1081005	0	-	0.55	(0.523,0.58]	chr2	117633	71	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	81	2	5.69157	5.73222	5.77287	0.0172851	0.00160162	0.0897247	0.0197827
chr19	5975405	5975500	7318970	0	-	0.452632	(0.45,0.485]	chr19	755877	6	INTRON	INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5:ENST00000587956.5:ENST00000591333.5:ENST00000592266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	83	2	5.56203	5.73185	5.90167	0.0137135	0.00322991	0.0799457	0.0319521
chr2	138530781	138530881	904175	0	+	0.35	(0.33,0.36]	chr2	101929	283	INTRON	INTRON	SPOPL	ENSG00000144228.9	ENST00000280098.9:ENST00000430968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	86	2	5.20687	5.73185	6.25683	0.041040600000000003	6.42061e-4	0.136289	0.0104165
chr8	75545154	75545251	3846430	0	+	0.340206	(0.33,0.36]	chr8	369241	8	INTRON	INTRON	HNF4G	ENSG00000164749.13	ENST00000396419.5:ENST00000354370.5:ENST00000396423.4:ENST00000674002.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	86	2	5.20687	5.73185	6.25683	0.041040600000000003	6.42061e-4	0.136289	0.0104165
chr20	44407799	44407877	7482997	0	+	0.346154	(0.33,0.36]	chr20	779655	4	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	254	2	4.62041	5.731635	6.84286	0.00272744	1.42632e-4	0.0331786	0.00355143
chr17	546376	546475	6822611	0	-	0.343434	(0.33,0.36]	chr17	689698	73	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681050.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000681600.1:ENST00000576149.5:ENST00000681917.1:ENST00000681103.1:ENST00000681858.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000679817.1:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	84	2	5.50696	5.731595	5.95623	0.0129408	0.00418696	0.0775979	0.0379935
chr16	78961416	78961516	6504033	0	+	0.48	(0.45,0.485]	chr16	645717	1811	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	82	2	5.50422	5.73158	5.95894	0.0257993	0.00119342	0.109555	0.016037
chr16	85588630	85588730	6518959	0	+	0.49	(0.485,0.523]	chr16	646396	319	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	5.65791	5.73153	5.80515	0.0181582	0.00153111	0.0921579	0.0191213
chr16	52539147	52539247	6589781	0	-	0.28	[0,0.29]	chr16	658709	192	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	80	2	5.63584	5.731445	5.82705	0.00830743	0.00193639	0.061139	0.0225083
chr16	87917464	87917564	6657540	0	-	0.45	(0.419,0.45]	chr16	666059	122	INTRON	INTRON	CA5A	ENSG00000174990.8	ENST00000649158.1:ENST00000648177.1:ENST00000649794.3:ENST00000648022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	255	2	4.08346	5.73123	7.379	0.00155644	7.98149e-4	0.0243306	0.012133
chr6	34924071	34924171	2900860	0	+	0.42	(0.419,0.45]	chr6	284492	341	INTRON	INTRON	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1:ENST00000650178.1	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.61031	5.730755	5.8512	0.0201381	0.004032	0.0973365	0.0371291
chr19	56596326	56596425	7295042	0	+	0.565657	(0.523,0.58]	chr19	751227	5	INTRON	INTRON	ZNF71	ENSG00000197951.10	ENST00000328070.10:ENST00000599599.7:ENST00000594944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	81	2	5.55012	5.730695	5.91127	0.0217068	0.00111349	0.100615	0.0152496
chr8	102372914	102373014	4031791	0	-	0.36	(0.33,0.36]	chr8	385211	109	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	1	224	2	3.97818	5.73057	7.48296	0.0106367	1.92465e-5	0.0698676	8.19985e-4
chr2	239344584	239344684	1392156	0	-	0.53	(0.523,0.58]	chr2	148752	201	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	81	2	5.72487	5.73048	5.73609	0.0163679	0.0017613	0.0875379	0.0211077
chr17	66781890	66781989	6788241	0	+	0.545455	(0.523,0.58]	chr17	684320	69	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.39327	5.730370000000001	6.06747	0.0277354	7.30845e-4	0.112851	0.0113963
chr2	127302429	127302528	1264781	0	-	0.434343	(0.419,0.45]	chr2	136284	39	UTR3	UTR3:EXON_MRNA	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5	protein_coding	protein_coding	protein_coding	protein_coding	4	882	2	4.94908	5.73017	6.51126	1.24243e-4	3.48017e-5	0.00618972	0.00126017
chr1	9293666	9293762	19590	0	+	0.614583	(0.58,1]	chr1	2201	2	INTRON	INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.66698	5.7299050000000005	5.79283	0.0102927	8.4246e-4	0.0684871	0.0125912
chr11	70763668	70763768	5061918	0	-	0.53	(0.523,0.58]	chr11	492701	458	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	82	2	5.5788	5.729760000000001	5.88072	0.0126258	0.00262418	0.0761905	0.0278348
chr9	129610771	129610870	4250938	0	+	0.666667	(0.58,1]	chr9	404743	12	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.50497	5.729755	5.95454	0.0059453	0.00187297	0.0506158	0.0219434
chr17	57464609	57464709	6761858	0	+	0.65	(0.58,1]	chr17	682137	195	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	79	2	5.59324	5.729075	5.86491	0.00707578	0.0014734	0.0558168	0.0185589
chr21	43727445	43727544	7623868	0	+	0.626263	(0.58,1]	chr21	796696	37	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000438837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	79	2	5.59324	5.729075	5.86491	0.00707578	0.0014734	0.0558168	0.0185589
chr5	176591690	176591788	2596982	0	+	0.510204	(0.485,0.523]	chr5	257776	1	SS5_PROX	SS5_PROX:INTRON	CDHR2	ENSG00000074276.11	ENST00000510636.5:ENST00000261944.10:ENST00000506348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	90	2	4.96239	5.729010000000001	6.49563	0.0518747	2.29841e-4	0.148503	0.00498593
chr4	81504316	81504416	2259711	0	-	0.49	(0.485,0.523]	chr4	228151	325	INTRON	INTRON	RASGEF1B	ENSG00000138670.19	ENST00000638048.1:ENST00000512716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	81	2	5.7253	5.728905	5.73251	0.0162644	0.00184599	0.0873195	0.0217471
chr8	9771591	9771683	3754892	0	+	0.543478	(0.523,0.58]	chr8	360881	10	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.14602	5.728865	6.31171	0.00734367	0.00594629	0.0550721	0.0506158
chr17	4195971	4196061	6840773	0	-	0.666667	(0.58,1]	chr17	692376	1	INTRON	INTRON	ANKFY1	ENSG00000185722.18	ENST00000341657.9:ENST00000648043.1:ENST00000570535.5:ENST00000574367.5:ENST00000572412.5:ENST00000570934.5:ENST00000573250.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	78	2	5.55681	5.72868	5.90055	0.0126042	6.1741e-4	0.0761905	0.0101143
chr19	2441019	2441119	7309596	0	-	0.61	(0.58,1]	chr19	753890	21	INTRON	INTRON	LMNB2	ENSG00000176619.13	ENST00000325327.4	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.55681	5.72868	5.90055	0.0126042	6.1741e-4	0.0761905	0.0101143
chr4	1325665	1325763	1995295	0	+	0.673469	(0.58,1]	chr4	203264	17	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	78	2	5.55681	5.72868	5.90055	0.0126042	6.1741e-4	0.0761905	0.0101143
chr4	77064512	77064612	2254870	0	-	0.46	(0.45,0.485]	chr4	227731	4	SS5_PROX	SS5_PROX:INTRON	CCNI	ENSG00000118816.11	ENST00000237654.9:ENST00000511943.5:ENST00000505609.5:ENST00000504697.1:ENST00000513774.1:ENST00000507788.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	180	2	4.64267	5.7286649999999995	6.81466	0.00274987	4.4327e-4	0.0332418	0.00804207
chr21	29381786	29381886	7604478	0	+	0.49	(0.485,0.523]	chr21	794472	200	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	5.48966	5.728415	5.96717	0.0108319	0.0033837199999999998	0.0707085	0.0328791
chr1	156547372	156547472	602016	0	-	0.5	(0.485,0.523]	chr1	71124	25	INTRON	INTRON	IQGAP3	ENSG00000183856.11	ENST00000491900.1:ENST00000361170.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	82	2	5.57523	5.72819	5.88115	0.012541	0.00274261	0.0761905	0.028553
chr21	44866740	44866839	7678509	0	-	0.373737	(0.36,0.39]	chr21	802773	7	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	1845	2	4.48183	5.728135	6.97444	4.83096e-5	1.51828e-5	0.00223783	0.0016063
chr10	79114218	79114318	4532497	0	+	0.34	(0.33,0.36]	chr10	432420	446	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	85	2	5.4188	5.7280999999999995	6.0374	0.0113089	0.00513015	0.0722887	0.0435186
chr10	34675878	34675959	4670413	0	-	0.54321	(0.523,0.58]	chr10	445530	4	EXON_PSEUDO	EXON_PSEUDO:INTRON	PARD3:RPS12P16	ENSG00000148498.17:ENSG00000215184.2	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6:ENST00000399739.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	0	81	2	5.69834	5.72788	5.75742	0.0155135	0.00194036	0.0849828	0.0225083
chr17	2085125	2085224	6832798	0	-	0.545455	(0.523,0.58]	chr17	691062	28	INTRON	INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11:ENST00000573166.5:ENST00000354901.8:ENST00000536871.6:ENST00000575454.1:ENST00000575338.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	81	2	5.69834	5.72788	5.75742	0.0155135	0.00194036	0.0849828	0.0225083
chr2	152337419	152337519	925485	0	+	0.43	(0.419,0.45]	chr2	103058	13	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	3	706	2	5.53804	5.727869999999999	5.9177	7.97958e-4	3.77225e-6	0.0167692	2.60499e-4
chr17	57349222	57349322	6760697	0	+	0.58	(0.523,0.58]	chr17	682104	385	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	217	2	4.5068	5.72755	6.9483	0.0035839	5.65196e-5	0.0384108	0.00179471
chr17	15468219	15468319	6860117	0	-	0.56	(0.523,0.58]	chr17	695071	7	INTRON	INTRON	TVP23C-CDRT4:CDRT4	ENSG00000259024.6:ENSG00000239704.11	ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	176	2	4.76064	5.727545	6.69445	0.00293287	2.70171e-4	0.0343709	0.00563203
chr19	34504048	34504148	7244309	0	+	0.44	(0.419,0.45]	chr19	741946	39	UTR3	UTR3:EXON_MRNA	WTIP	ENSG00000142279.13	ENST00000590071.7	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	5.59315	5.727494999999999	5.86184	0.029494	0.00223565	0.116079	0.024843
chrX	65517586	65517686	8055050	0	-	0.48	(0.45,0.485]	chrX	840753	2	SS5_PROX	SS5_PROX:INTRON	LAS1L	ENSG00000001497.18	ENST00000677056.1:ENST00000677969.1:ENST00000374811.8:ENST00000374807.9:ENST00000677834.1:ENST00000484069.1:ENST00000374804.9:ENST00000677986.1:ENST00000677087.1:ENST00000679056.1:ENST00000679261.1:ENST00000678074.1:ENST00000678705.1:ENST00000679277.1:ENST00000677154.1:ENST00000678547.1:ENST00000678956.1:ENST00000679116.1:ENST00000678848.1:ENST00000678173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	82	2	5.6428	5.72745	5.8121	0.0158765	0.00265386	0.0859576	0.027979
chr18	58705283	58705383	7075431	0	+	0.36	(0.33,0.36]	chr18	721374	43	INTRON	INTRON	MALT1	ENSG00000172175.15	ENST00000649217.2:ENST00000345724.7:ENST00000650045.1:ENST00000648670.1:ENST00000649202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	103	2	4.80497	5.727415000000001	6.64986	0.0188359	0.00388382	0.0980631	0.0401804
chr20	44402644	44402744	7482940	0	+	0.67	(0.58,1]	chr20	779639	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000682427.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	265	2	4.35965	5.7274	7.09515	5.31842e-4	6.21222e-5	0.0134466	0.00192539
chr7	47476506	47476606	3588573	0	-	0.45	(0.419,0.45]	chr7	346123	234	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	5.6954	5.72738	5.75936	0.0254103	0.00285253	0.108573	0.0294017
chr3	12964507	12964606	1688774	0	-	0.545455	(0.523,0.58]	chr3	176520	35	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	85	2	5.35452	5.727065	6.09961	0.00866655	0.00453096	0.0623824	0.0400651
chr21	45451724	45451824	7630780	0	+	0.64	(0.58,1]	chr21	797656	459	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.36153	5.727045	6.09256	0.00452436	0.00273899	0.0436138	0.028553
chr5	881960	882058	2608195	0	-	0.469388	(0.45,0.485]	chr5	259472	9	EXON_MRNA	EXON_MRNA:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	241	2	4.2982	5.726815	7.15543	0.00144472	3.22079e-4	0.0232985	0.00637349
chr13	112744358	112744458	5653085	0	+	0.49	(0.485,0.523]	chr13	554906	268	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000466946.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	81	2	5.5129	5.726605	5.94031	0.0229047	0.00107389	0.102982	0.0148869
chrX	9526093	9526193	7843056	0	+	0.5	(0.485,0.523]	chrX	822404	239	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	3	641	2	5.16334	5.726319999999999	6.2893	3.82217e-4	2.21578e-6	0.0112085	1.78995e-4
chr18	76967018	76967117	7096868	0	+	0.393939	(0.39,0.419]	chr18	722760	58	INTRON	INTRON	ZNF236	ENSG00000130856.17	ENST00000320610.14:ENST00000543926.6:ENST00000253159.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	101	2	4.69798	5.72623	6.75448	0.088901	1.95875e-4	0.183874	0.00445752
chr17	82150260	82150360	6987876	0	-	0.65	(0.58,1]	chr17	714577	145	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000419322.6:ENST00000392346.6:ENST00000582040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	78	2	5.71628	5.7261500000000005	5.73602	0.00904546	0.00104668	0.0637469	0.0146403
chr17	749256	749351	6824480	0	-	0.589474	(0.58,1]	chr17	689919	14	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	GEMIN4	ENSG00000179409.11	ENST00000319004.6:ENST00000576778.1:ENST00000437269.1:ENST00000573482.5:ENST00000570364.5:ENST00000576383.1:ENST00000574958.1	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	5.21377	5.726045	6.23832	0.0230012	2.24165e-4	0.102982	0.00490779
chr9	129610969	129611069	4250940	0	+	0.55	(0.523,0.58]	chr9	404743	14	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.25403	5.725885	6.19774	0.0072907	0.00573579	0.0567247	0.0467736
chr9	134369175	134369275	4261115	0	+	0.56	(0.523,0.58]	chr9	406311	422	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	87	2	5.25403	5.725885	6.19774	0.0072907	0.00573579	0.0567247	0.0467736
chrX	2382261	2382361	7967666	0	-	0.57	(0.523,0.58]	chrX	834355	439	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	87	2	5.25403	5.725885	6.19774	0.0072907	0.00573579	0.0567247	0.0467736
chr10	31323882	31323982	4471792	0	+	0.37	(0.36,0.39]	chr10	427863	14	INTRON	INTRON	ZEB1	ENSG00000148516.23	ENST00000488625.6:ENST00000560196.5:ENST00000542879.5:ENST00000561304.5:ENST00000320985.14:ENST00000560721.6:ENST00000559858.5:ENST00000558440.5:ENST00000437844.6:ENST00000424869.6:ENST00000542815.7:ENST00000558863.5:ENST00000561212.5:ENST00000558655.5:ENST00000561061.5:ENST00000559496.5:ENST00000446923.7:ENST00000557827.5:ENST00000606671.5:ENST00000606161.1:ENST00000558832.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	190	2	4.33287	5.72582	7.11877	0.00202009	0.00126236	0.0283135	0.0167512
chr20	46560598	46560698	7568081	0	-	0.47	(0.45,0.485]	chr20	790832	4	SS3_PROX	SS3_PROX:INTRON	SLC13A3	ENSG00000158296.14	ENST00000290317.9:ENST00000279027.9:ENST00000472148.5:ENST00000413164.6:ENST00000495082.5	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	5.34301	5.725815	6.10862	0.0328801	8.0459e-4	0.122593	0.012189
chr19	16458715	16458815	7344553	0	-	0.51	(0.485,0.523]	chr19	760800	161	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5:ENST00000597937.5:ENST00000593760.5:ENST00000596037.5:ENST00000597559.5:ENST00000602151.1:ENST00000595845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	216	2	4.47504	5.725759999999999	6.97648	0.00379011	5.50755e-5	0.0396388	0.00176017
chr9	123405087	123405187	4396611	0	-	0.59	(0.58,1]	chr9	419589	12	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	84	2	5.25731	5.725755	6.1942	0.00368616	0.00358178	0.0389784	0.0342681
chr18	76424859	76424959	7179368	0	-	0.45	(0.419,0.45]	chr18	730080	442	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	5.72351	5.725725000000001	5.72794	0.0242188	0.00310292	0.106588	0.0311614
chrX	139861774	139861874	8119250	0	-	0.43	(0.419,0.45]	chrX	845912	296	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	83	2	5.72351	5.725725000000001	5.72794	0.0242188	0.00310292	0.106588	0.0311614
chr2	119876922	119877022	884766	0	+	0.36	(0.33,0.36]	chr2	100125	2	SS3_PROX	SS3_PROX:INTRON	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000460289.5:ENST00000488279.6:ENST00000485247.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	188	2	5.02422	5.725605	6.42699	0.00578704	1.67953e-4	0.0501412	0.00400497
chr13	98488098	98488198	5747397	0	-	0.49	(0.485,0.523]	chr13	563336	54	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000376547.7:ENST00000444574.1:ENST00000491878.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	85	2	5.35096	5.7255	6.10004	0.00860355	0.0047171	0.0623467	0.0413976
chr2	54043058	54043158	795631	0	+	0.44	(0.419,0.45]	chr2	90708	678	INTRON	INTRON	ACYP2	ENSG00000170634.13	ENST00000458030.3:ENST00000422521.2:ENST00000607452.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	84	2	5.57051	5.725474999999999	5.88044	0.0192645	0.00441471	0.0954446	0.0393688
chr14	99991925	99992025	5908159	0	+	0.48	(0.45,0.485]	chr14	577587	195	INTRON	INTRON	EVL	ENSG00000196405.13	ENST00000402714.6	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.23735	5.72515	6.21295	0.00810629	0.00687715	0.0602166	0.0526888
chr11	46120149	46120245	5030826	0	-	0.458333	(0.45,0.485]	chr11	486597	4	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000690620.1:ENST00000418153.6:ENST00000532883.5:ENST00000524497.5:ENST00000693122.1:ENST00000529734.5:ENST00000688222.1:ENST00000690039.1:ENST00000692265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	83	2	5.51989	5.725115000000001	5.93034	0.0130794	0.00357389	0.0782396	0.0342681
chr11	70574129	70574229	5060014	0	-	0.59	(0.58,1]	chr11	492663	708	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	81	2	5.41094	5.724935	6.03893	0.00503456	0.00240622	0.0464858	0.0261006
chr21	39207356	39207454	7671286	0	-	0.438776	(0.419,0.45]	chr21	801525	7	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000424441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	88	2	5.30548	5.724845	6.14421	0.0127879	0.00792071	0.0769397	0.057762
chr1	12581961	12582060	402422	0	-	0.393939	(0.39,0.419]	chr1	46222	9	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	192	2	4.27183	5.72484	7.17785	0.00186901	0.00148741	0.0270134	0.0186923
chr20	36857578	36857677	7557077	0	-	0.616162	(0.58,1]	chr20	789155	178	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	1	194	2	4.39644	5.724775	7.05311	0.00271982	1.5843e-5	0.0331692	7.12006e-4
chr18	11143529	11143629	7119873	0	-	0.36	(0.33,0.36]	chr18	724490	770	INTRON	INTRON	PIEZO2	ENSG00000154864.14	ENST00000302079.10:ENST00000674853.1:ENST00000383408.7:ENST00000503781.7:ENST00000580640.5:ENST00000582913.5:ENST00000686869.1:ENST00000688929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	93	2	4.89468	5.72456	6.55444	0.0629186	2.86128e-4	0.160778	0.00586813
chr2	3330527	3330627	1081417	0	-	0.58	(0.523,0.58]	chr2	117645	101	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	81	2	5.65959	5.7244150000000005	5.78924	0.0147166	0.0021416	0.0826843	0.0240825
chr5	857470	857570	2607929	0	-	0.57	(0.523,0.58]	chr5	259417	65	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	0	88	2	5.01677	5.724305	6.43184	0.0482765	2.62665e-4	0.144601	0.00552802
chr11	68002130	68002228	5055877	0	-	0.44898	(0.419,0.45]	chr11	492162	21	INTRON	INTRON	UNC93B1	ENSG00000110057.8	ENST00000227471.7:ENST00000622364.4:ENST00000533424.5:ENST00000524455.5:ENST00000528423.1:ENST00000528096.1:ENST00000530138.3:ENST00000531152.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	87	2	5.35317	5.724175000000001	6.09518	0.0138177	0.00714797	0.0803169	0.0541241
chr2	149630830	149630930	920254	0	+	0.47	(0.45,0.485]	chr2	102788	364	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	1	195	2	5.28283	5.72417	6.16551	0.00879664	6.69067e-5	0.0630845	0.00203052
chr17	40135839	40135937	6732840	0	+	0.459184	(0.45,0.485]	chr17	677123	16	UTR3	UTR3:EXON_MRNA	MSL1	ENSG00000188895.12	ENST00000398532.9:ENST00000339569.9:ENST00000580086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	181	2	4.48652	5.72364	6.96076	0.00209187	6.88779e-4	0.0287557	0.0109212
chr7	105716713	105716813	3670086	0	-	0.53	(0.523,0.58]	chr7	353945	252	INTRON	INTRON	ATXN7L1	ENSG00000146776.15	ENST00000419735.8	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.53665	5.72331	5.90997	0.012016	0.00291382	0.0743424	0.0298557
chrX	1417079	1417177	7965650	0	-	0.530612	(0.523,0.58]	chrX	834254	39	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.53665	5.72331	5.90997	0.012016	0.00291382	0.0743424	0.0298557
chr22	29966778	29966878	7710196	0	+	0.33	(0.29,0.33]	chr22	806661	93	INTRON	INTRON	MTMR3	ENSG00000100330.16	ENST00000333027.7:ENST00000401950.7:ENST00000495098.5:ENST00000445401.5:ENST00000323630.9:ENST00000351488.7:ENST00000415511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	82	2	5.35847	5.723129999999999	6.08779	0.0269557	7.71544e-4	0.112113	0.0118336
chr7	79130911	79131011	3623305	0	-	0.32	(0.29,0.33]	chr7	349228	1221	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000628997.1:ENST00000636424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	82	2	5.35847	5.723129999999999	6.08779	0.0269557	7.71544e-4	0.112113	0.0118336
chr19	36215396	36215496	7248152	0	+	0.48	(0.45,0.485]	chr19	742978	2	SS5_PROX	SS5_PROX:INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	651	2	4.96047	5.723025	6.48558	6.85274e-4	1.47783e-6	0.0154116	1.35552e-4
chr7	892618	892718	3307710	0	+	0.6	(0.58,1]	chr7	320473	2	SS5_PROX	SS5_PROX:INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000407192.5:ENST00000464468.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	78	2	5.67642	5.72288	5.76934	0.00849371	0.00117039	0.0617717	0.0157899
chr3	111738598	111738698	1534336	0	+	0.36	(0.33,0.36]	chr3	162941	55	INTRON	INTRON	PLCXD2:PHLDB2	ENSG00000240891.8:ENSG00000144824.21	ENST00000393934.7:ENST00000477665.2:ENST00000474484.1:ENST00000393923.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	93	2	5.05937	5.722815000000001	6.38626	0.0112642	0.00621741	0.071709	0.052147
chr9	126413778	126413878	4241500	0	+	0.45	(0.419,0.45]	chr9	402686	163	INTRON	INTRON	MVB12B	ENSG00000196814.15	ENST00000361171.8:ENST00000470567.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	86	2	5.23407	5.72279	6.21151	0.0486006	9.41863e-4	0.145074	0.0135546
chr2	232583353	232583450	1055275	0	+	0.474227	(0.45,0.485]	chr2	114733	24	UTR3	UTR3:EXON_MRNA	EIF4E2	ENSG00000135930.15	ENST00000687222.1:ENST00000690794.1:ENST00000409098.5:ENST00000409514.5:ENST00000459714.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	82	2	5.60298	5.72278	5.84258	0.0151085	0.00292492	0.0841543	0.029882
chr1	43556732	43556832	107006	0	+	0.54	(0.523,0.58]	chr1	13192	24	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	88	2	5.20104	5.72273	6.24442	0.00670944	0.00648051	0.0541591	0.0503748
chr9	108900475	108900575	4362796	0	-	0.5	(0.485,0.523]	chr9	416548	1	SS3_PROX	SS3_PROX:INTRON	ELP1	ENSG00000070061.16	ENST00000675765.1:ENST00000374647.10:ENST00000675078.1:ENST00000674948.1:ENST00000676121.1:ENST00000676429.1:ENST00000674704.1:ENST00000674938.1:ENST00000675602.1:ENST00000675215.1:ENST00000676044.1:ENST00000675979.1:ENST00000675325.1:ENST00000495759.6:ENST00000675893.1:ENST00000675943.1:ENST00000675535.1:ENST00000674890.1:ENST00000675233.1:ENST00000676086.1:ENST00000674836.1:ENST00000675406.1:ENST00000675748.1:ENST00000675400.1:ENST00000676237.1:ENST00000675825.1:ENST00000676424.1:ENST00000675647.1:ENST00000675877.1:ENST00000676416.1:ENST00000675052.1:ENST00000674535.1:ENST00000537196.1:ENST00000675566.1:ENST00000675507.1:ENST00000675727.1:ENST00000675711.1:ENST00000675458.1:ENST00000675335.1:ENST00000675321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	88	2	5.01719	5.72271	6.42823	0.0480495	2.78987e-4	0.144601	0.00577243
chr9	132071550	132071650	4422744	0	-	0.51	(0.485,0.523]	chr9	422092	390	INTRON	INTRON	MED27	ENSG00000160563.14	ENST00000651950.1:ENST00000357028.6:ENST00000292035.10:ENST00000651555.1:ENST00000650776.1:ENST00000444872.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	82	2	5.35167	5.72243	6.09319	0.0294163	7.11715e-4	0.116079	0.0112082
chrX	9567841	9567941	7843478	0	+	0.58	(0.523,0.58]	chrX	822423	69	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	83	2	5.26332	5.722305	6.18129	0.0337698	5.34061e-4	0.124319	0.0091384
chr16	87739624	87739724	6656477	0	-	0.56	(0.523,0.58]	chr16	665892	86	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	214	2	4.07988	5.722155	7.36443	0.00800435	1.54352e-5	0.0597631	6.98728e-4
chr9	4714578	4714676	4269916	0	-	0.397959	(0.39,0.419]	chr9	407900	11	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.14823	5.721915	6.2956	0.0501234	6.75278e-4	0.147892	0.010811
chr9	88397008	88397108	4177748	0	+	0.46	(0.45,0.485]	chr9	397315	72	INTRON	INTRON	SPIN1	ENSG00000106723.17	ENST00000485804.5:ENST00000469017.6:ENST00000375859.4:ENST00000462844.5:ENST00000485565.6:ENST00000483785.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	222	2	4.52856	5.72185	6.91514	0.00381065	8.2790699999999993e-05	0.0398349	0.00237398
chr5	151788485	151788580	2567247	0	+	0.515789	(0.485,0.523]	chr5	255263	3	INTRON	INTRON	G3BP1	ENSG00000145907.16	ENST00000523519.5:ENST00000520578.6:ENST00000678070.1:ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000522761.6:ENST00000677909.1:ENST00000676827.1:ENST00000520177.6:ENST00000676634.1:ENST00000678854.1:ENST00000677602.1:ENST00000519832.1:ENST00000676911.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000678910.1:ENST00000678101.1:ENST00000677105.1:ENST00000676813.1:ENST00000522367.6:ENST00000517947.5:ENST00000507878.7:ENST00000678369.1:ENST00000677433.1:ENST00000678564.1:ENST00000677252.1:ENST00000677923.1:ENST00000677323.1:ENST00000522666.1:ENST00000679057.1:ENST00000677146.1:ENST00000677126.1:ENST00000678027.1:ENST00000678209.1:ENST00000678153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	82	2	5.53308	5.7217400000000005	5.9104	0.0119344	0.00304306	0.0741726	0.0306636
chr2	127741451	127741551	1267020	0	-	0.45	(0.419,0.45]	chr2	136574	30	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5	protein_coding	protein_coding	protein_coding	protein_coding	1	229	2	4.16516	5.7215050000000005	7.27785	0.00938072	5.20883e-5	0.0652879	0.00169273
chr10	102114855	102114946	4752397	0	-	0.648352	(0.58,1]	chr10	454305	6	UTR5	UTR5:EXON_MRNA:INTRON	LDB1	ENSG00000198728.11	ENST00000673968.1:ENST00000425280.2:ENST00000361198.9	protein_coding	protein_coding	protein_coding	protein_coding	2	403	2	5.39079	5.72145	6.05211	2.88709e-4	1.92467e-6	0.0096494	1.62188e-4
chr13	33643282	33643382	5689007	0	-	0.51	(0.485,0.523]	chr13	558276	79	INTRON	INTRON	ENSG00000230490	ENSG00000230490.4	ENST00000686875.1:ENST00000454681.2:ENST00000655117.2:ENST00000690486.1:ENST00000654283.1:ENST00000653421.1	lncRNA	lncRNA	lncRNA	lncRNA	0	83	2	5.26375	5.720725	6.1777	0.0335928	5.64449e-4	0.124319	0.00950156
chr3	51664311	51664410	1472183	0	+	0.494949	(0.485,0.523]	chr3	157989	10	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	5.26375	5.720725	6.1777	0.0335928	5.64449e-4	0.124319	0.00950156
chr6	36064022	36064121	2904661	0	+	0.363636	(0.36,0.39]	chr6	284907	43	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000622903.4:ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5:ENST00000472333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	86	2	5.36211	5.720665	6.07922	0.0122748	0.00643924	0.0755611	0.0503748
chr1	61812324	61812424	150644	0	+	0.48	(0.45,0.485]	chr1	17332	34	INTRON	INTRON	PATJ	ENSG00000132849.22	ENST00000371158.6:ENST00000484562.5:ENST00000459752.5:ENST00000635214.1:ENST00000642238.2:ENST00000635023.1:ENST00000484937.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	81	2	5.64922	5.720565	5.79191	0.020599	0.00183113	0.0982852	0.0216571
chr4	55544167	55544265	2240274	0	-	0.428571	(0.419,0.45]	chr4	225768	35	INTRON	INTRON	CLOCK	ENSG00000134852.15	ENST00000513440.6:ENST00000381322.5:ENST00000435527.6:ENST00000506923.5:ENST00000509151.5:ENST00000513033.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	83	2	5.4831	5.720305	5.95751	0.0345118	0.0017735	0.126025	0.02121
chr16	85227202	85227284	6515340	0	+	0.487805	(0.485,0.523]	chr16	646374	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	91	2	5.08528	5.7203	6.35532	0.0086528	0.00545609	0.0612699	0.0486984
chr18	77131138	77131238	7181634	0	-	0.66	(0.58,1]	chr18	730194	2	SS5_PROX	SS5_PROX:INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	92	2	4.95814	5.720245	6.48235	0.0074469	0.00202884	0.0553519	0.0283135
chr21	45499250	45499349	7631297	0	+	0.606061	(0.58,1]	chr21	797812	12	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	0	92	2	4.95814	5.720245	6.48235	0.0074469	0.00202884	0.0553519	0.0283135
chr2	239349479	239349579	1392205	0	-	0.56	(0.523,0.58]	chr2	148752	250	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	81	2	5.61976	5.720075	5.82039	0.0139724	0.00236826	0.0805959	0.0259199
chr5	176980276	176980375	2817039	0	-	0.565657	(0.523,0.58]	chr5	275889	1	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000509236.5:ENST00000417486.6:ENST00000515488.1:ENST00000507513.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	81	2	5.61976	5.720075	5.82039	0.0139724	0.00236826	0.0805959	0.0259199
chr14	37227425	37227525	5783361	0	+	0.43	(0.419,0.45]	chr14	566845	3	SS3_PROX	SS3_PROX:INTRON	MIPOL1	ENSG00000151338.20	ENST00000694961.1:ENST00000396294.6:ENST00000537471.6:ENST00000556615.5:ENST00000554114.2:ENST00000695502.1:ENST00000695405.1:ENST00000695503.1:ENST00000684589.1:ENST00000327441.11:ENST00000694962.1:ENST00000539062.6:ENST00000554930.5:ENST00000556451.5:ENST00000694963.1:ENST00000555870.5:ENST00000694964.1:ENST00000556753.5:ENST00000694965.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	83	2	5.64904	5.71996	5.79088	0.022052	0.00368884	0.101502	0.0348088
chr20	3492295	3492395	7419774	0	+	0.44	(0.419,0.45]	chr20	772906	204	INTRON	INTRON	ATRN	ENSG00000088812.18	ENST00000262919.10:ENST00000446916.2	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	5.64904	5.71996	5.79088	0.022052	0.00368884	0.101502	0.0348088
chr5	93883882	93883982	2727022	0	-	0.42	(0.419,0.45]	chr5	267870	18	INTRON	INTRON	FAM172A	ENSG00000113391.19	ENST00000395965.8:ENST00000505869.5:ENST00000509739.5:ENST00000509163.5:ENST00000502503.1:ENST00000506398.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	83	2	5.64904	5.71996	5.79088	0.022052	0.00368884	0.101502	0.0348088
chr14	102878419	102878518	5921287	0	+	0.444444	(0.419,0.45]	chr14	579084	15	INTRON	INTRON	TRAF3	ENSG00000131323.16	ENST00000392745.8:ENST00000560371.5:ENST00000347662.8:ENST00000539721.5:ENST00000351691.9:ENST00000558700.5:ENST00000559734.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	84	2	5.36395	5.71995	6.07595	0.0407485	0.00132452	0.135868	0.0173138
chr8	42947609	42947708	3809772	0	+	0.383838	(0.36,0.39]	chr8	366864	38	INTRON	INTRON	HOOK3	ENSG00000168172.9	ENST00000527306.1:ENST00000307602.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	82	2	5.6023	5.7198899999999995	5.83748	0.0258522	0.00213426	0.109555	0.0240825
chr2	186655387	186655477	973005	0	+	0.511111	(0.485,0.523]	chr2	106931	3	INTRON	INTRON	ITGAV	ENSG00000138448.12	ENST00000261023.8:ENST00000374907.7:ENST00000433736.6	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	5.44489	5.7198150000000005	5.99474	0.0103305	0.00377098	0.0684871	0.0353672
chr11	118380150	118380250	4946392	0	+	0.46	(0.45,0.485]	chr11	477384	4	SS5_PROX	SS5_PROX:INTRON	UBE4A	ENSG00000110344.10	ENST00000252108.8:ENST00000431736.6:ENST00000545354.1	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	5.57854	5.7198	5.86106	0.0230065	0.00153611	0.102982	0.0191553
chr7	67189401	67189500	3385928	0	+	0.474747	(0.45,0.485]	chr7	326607	58	INTRON	INTRON	TYW1	ENSG00000198874.14	ENST00000359626.10:ENST00000361660.8:ENST00000495971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	81	2	5.57854	5.7198	5.86106	0.0230065	0.00153611	0.102982	0.0191553
chr3	158118402	158118502	1607052	0	+	0.47	(0.45,0.485]	chr3	169331	74	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000494002.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000684512.1:ENST00000683394.1:ENST00000684156.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000468344.5:ENST00000471911.5:ENST00000683137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	81	2	5.6833	5.7196750000000005	5.75605	0.0195193	0.002004	0.0955413	0.0230381
chr10	132688891	132688991	4618353	0	+	0.5	(0.485,0.523]	chr10	441157	380	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	5.43453	5.71897	6.00341	0.0258944	9.07333e-4	0.109555	0.0132726
chr22	50681092	50681189	7754980	0	+	0.494845	(0.485,0.523]	chr22	812716	13	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	81	2	5.43453	5.71897	6.00341	0.0258944	9.07333e-4	0.109555	0.0132726
chr13	93693485	93693585	5622448	0	+	0.53	(0.523,0.58]	chr13	553058	1477	INTRON	INTRON	GPC6	ENSG00000183098.11	ENST00000377047.9	protein_coding	protein_coding	protein_coding	protein_coding	1	214	2	5.64844	5.71884	5.78924	0.0147166	1.71084e-5	0.0826843	7.52168e-4
chr20	44403980	44404078	7482955	0	+	0.55102	(0.523,0.58]	chr20	779645	7	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	213	2	4.10968	5.71875	7.32782	0.0075776	1.73343e-5	0.0579104	7.59912e-4
chr2	241415887	241415986	1076819	0	+	0.50505	(0.485,0.523]	chr2	116969	21	INTRON	INTRON	FARP2	ENSG00000006607.14	ENST00000264042.8:ENST00000627550.2:ENST00000373287.8:ENST00000471447.5:ENST00000485051.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	81	2	5.61619	5.7185	5.82081	0.0138807	0.00247695	0.0804838	0.0266492
chr13	77131423	77131523	5732501	0	-	0.48	(0.45,0.485]	chr13	562026	18	INTRON	INTRON	MYCBP2	ENSG00000005810.20	ENST00000683823.1:ENST00000684354.1:ENST00000682321.1:ENST00000695079.1:ENST00000695078.1:ENST00000683697.1:ENST00000357337.11:ENST00000544440.7:ENST00000695080.1:ENST00000695081.1:ENST00000695086.1:ENST00000466564.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	81	2	5.71659	5.717935000000001	5.71928	0.018513	0.00219685	0.0928429	0.0245167
chr9	123566856	123566955	4398246	0	-	0.373737	(0.36,0.39]	chr9	419658	88	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	85	2	5.40829	5.717915	6.02754	0.0133452	0.00581205	0.0789398	0.0472624
chr12	39387152	39387252	5411549	0	-	0.46	(0.45,0.485]	chr12	530029	165	INTRON	INTRON	KIF21A	ENSG00000139116.19	ENST00000361418.10:ENST00000361961.7:ENST00000636569.1:ENST00000544797.6:ENST00000541463.6	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.38503	5.717815	6.0506	0.0308908	9.38528e-4	0.119556	0.0135546
chr19	36849701	36849801	7371652	0	-	0.48	(0.45,0.485]	chr19	764197	3	SS5_PROX	SS5_PROX:INTRON	ZNF790	ENSG00000197863.9	ENST00000613249.4:ENST00000614179.4:ENST00000528994.5:ENST00000586323.5	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.38503	5.717815	6.0506	0.0308908	9.38528e-4	0.119556	0.0135546
chr4	150555722	150555822	2345616	0	-	0.35	(0.33,0.36]	chr4	234716	643	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000503716.5:ENST00000509835.5:ENST00000648626.1:ENST00000651695.1:ENST00000651035.1:ENST00000507224.5:ENST00000513021.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	83	2	5.50696	5.717545	5.92813	0.0135535	0.00418696	0.0793558	0.0379935
chr2	10368763	10368853	719088	0	+	0.466667	(0.45,0.485]	chr2	84035	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4:ENST00000613496.4:ENST00000620771.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	83	2	5.47648	5.71746	5.95844	0.0124835	0.0039628	0.0761905	0.0368027
chrX	71555089	71555189	7905903	0	+	0.38	(0.36,0.39]	chrX	828365	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000455587.3:ENST00000459760.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	224	2	4.09913	5.717345	7.33556	0.00950863	3.69172e-5	0.0657367	0.00131447
chrX	2397864	2397964	7967823	0	-	0.46	(0.45,0.485]	chrX	834361	50	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	82	2	5.56203	5.71723	5.87243	0.0143887	0.00322991	0.0821732	0.0319521
chr16	85384538	85384638	6516916	0	+	0.6	(0.58,1]	chr16	646391	252	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.14497	5.717055	6.28914	0.00474658	0.00303562	0.0413976	0.0350226
chr1	19145502	19145597	409429	0	-	0.4	(0.39,0.419]	chr1	47630	2	SS5_PROX	SS5_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1:ENST00000465036.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	85	2	5.40772	5.716950000000001	6.02618	0.0136549	0.00585126	0.0798074	0.0474117
chr4	1323394	1323494	1995271	0	+	0.54	(0.523,0.58]	chr4	203260	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	82	2	5.30795	5.716725	6.1255	0.0315825	6.23263e-4	0.120781	0.0101764
chr4	3365989	3366088	2005096	0	+	0.686869	(0.58,1]	chr4	204663	226	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	162	2	4.7449	5.716445	6.68799	0.00130716	1.74253e-4	0.0220198	0.00410754
chr1	59701693	59701793	142173	0	+	0.47	(0.45,0.485]	chr1	16921	24	INTRON	INTRON	FGGY	ENSG00000172456.18	ENST00000634606.1:ENST00000371218.8:ENST00000634364.1:ENST00000303721.12:ENST00000635297.1:ENST00000634399.1:ENST00000424725.2:ENST00000635156.1:ENST00000371212.5:ENST00000371210.1:ENST00000493891.5:ENST00000476939.5:ENST00000472783.5:ENST00000471169.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	90	2	5.12938	5.71638	6.30338	0.00873194	0.00692617	0.0612699	0.0553898
chr7	566461	566561	3523749	0	-	0.43	(0.419,0.45]	chr7	340370	146	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000400758.6	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	5.44447	5.71626	5.98805	0.0364384	0.00164584	0.128173	0.0202325
chr19	37218329	37218429	7252055	0	+	0.62	(0.58,1]	chr19	743294	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF383	ENSG00000188283.12	ENST00000586068.5:ENST00000585441.5:ENST00000586658.1:ENST00000590503.5:ENST00000684119.1:ENST00000589413.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	162	2	4.72691	5.7161100000000005	6.70531	0.00125905	1.84649e-4	0.0215793	0.0042795
chr11	12814123	12814223	4803043	0	+	0.55	(0.523,0.58]	chr11	460563	493	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.49322	5.71593	5.93864	0.0114442	0.00324246	0.0723462	0.0319521
chr9	134370373	134370472	4261127	0	+	0.525253	(0.523,0.58]	chr9	406311	434	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	82	2	5.49322	5.71593	5.93864	0.0114442	0.00324246	0.0723462	0.0319521
chrX	110126721	110126821	7934870	0	+	0.41	(0.39,0.419]	chrX	830401	172	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000461715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	82	2	5.52851	5.715695	5.90288	0.029339	0.00183094	0.116079	0.0216571
chr6	601121	601220	3078171	0	-	0.474747	(0.45,0.485]	chr6	299385	15	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	0	85	2	5.16149	5.715685	6.26988	0.0427653	5.20615e-4	0.13762	0.00899129
chr10	132766146	132766246	4619134	0	+	0.48	(0.45,0.485]	chr10	441206	3	SS5_PROX	SS5_PROX:INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000445580.1	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	5.50422	5.715635000000001	5.92705	0.0257993	0.00129636	0.109555	0.0170746
chr10	127163447	127163547	4609558	0	+	0.41	(0.39,0.419]	chr10	440787	353	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	4.99538	5.715635	6.43589	0.0613573	4.66094e-4	0.158506	0.00828434
chr2	171836920	171837020	1316657	0	-	0.41	(0.39,0.419]	chr2	140830	4	SS5_PROX	SS5_PROX:INTRON	SLC25A12	ENSG00000115840.14	ENST00000422440.7:ENST00000263812.8:ENST00000426896.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	82	2	5.69518	5.715465	5.73575	0.0215144	0.00302238	0.100612	0.0305643
chr6	16471034	16471134	3101545	0	-	0.47	(0.45,0.485]	chr6	300850	376	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	184	2	5.04227	5.715375	6.38848	0.0059625	1.38139e-4	0.0506812	0.00347303
chr13	77023154	77023253	5731523	0	-	0.565657	(0.523,0.58]	chr13	561841	9	INTRON	INTRON	FBXL3	ENSG00000005812.11	ENST00000355619.10:ENST00000417323.1:ENST00000472949.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	86	2	5.06957	5.715355	6.36114	0.0448011	3.21725e-4	0.140478	0.0063695
chr21	43751822	43751919	7624135	0	+	0.556701	(0.523,0.58]	chr21	796773	9	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000498040.5:ENST00000481512.5:ENST00000490666.5:ENST00000467908.1:ENST00000343528.10:ENST00000398078.7:ENST00000468392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	80	2	5.5868	5.7152650000000005	5.84373	0.020474	0.00133116	0.0979776	0.0173248
chr12	122021893	122021992	5342968	0	+	0.606061	(0.58,1]	chr12	521826	26	UTR5	UTR5:EXON_MRNA	BCL7A	ENSG00000110987.9	ENST00000538010.5:ENST00000261822.5:ENST00000432926.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	605	2	5.04185	5.71502	6.38819	6.47986e-4	9.62614e-8	0.0149631	2.2738e-5
chr3	128497175	128497270	1563268	0	+	0.631579	(0.58,1]	chr3	165334	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	GATA2-AS1	ENSG00000244300.3	ENST00000464242.1:ENST00000468377.1:ENST00000669945.1	lncRNA	lncRNA	lncRNA	lncRNA	0	81	2	5.16453	5.714985	6.26544	0.0249802	2.06156e-4	0.10758	0.00461335
chr18	36014991	36015091	7145073	0	-	0.33	(0.29,0.33]	chr18	726770	213	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.62984	5.714805	5.79977	0.0174273	0.00164635	0.0901531	0.0202325
chr19	56404552	56404652	7294710	0	+	0.48	(0.45,0.485]	chr19	751198	1	SS5_PROX	SS5_PROX:INTRON	ZNF583	ENSG00000198440.9	ENST00000588635.1:ENST00000291598.11:ENST00000537943.5:ENST00000539211.6:ENST00000333201.13:ENST00000391778.3:ENST00000436972.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	87	2	5.06138	5.7147749999999995	6.36817	0.0492008	3.97249e-4	0.146142	0.00741985
chr4	139309379	139309479	2132637	0	+	0.35	(0.33,0.36]	chr4	216615	68	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000482087.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	181	2	4.69536	5.7143999999999995	6.73344	0.00333555	4.30032e-4	0.0368376	0.00783916
chr11	64306226	64306314	4868815	0	+	0.681818	(0.58,1]	chr11	467348	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ESRRA	ENSG00000173153.17	ENST00000406310.6:ENST00000000442.11:ENST00000677967.1:ENST00000539594.5:ENST00000405666.5	protein_coding	protein_coding	protein_coding	protein_coding	3	260	2	3.93445	5.714385	7.49432	2.5756e-4	2.13416e-4	0.00826482	0.00545201
chr22	38204349	38204448	7724335	0	+	0.535354	(0.523,0.58]	chr22	809114	4	INTRON	INTRON	MAFF	ENSG00000185022.12	ENST00000538999.1:ENST00000538320.5:ENST00000338483.7:ENST00000441709.1:ENST00000417948.5:ENST00000426621.6	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.35452	5.7142599999999995	6.074	0.00906277	0.00453096	0.0637469	0.0400651
chr12	105120697	105120794	5315183	0	+	0.381443	(0.36,0.39]	chr12	517681	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WASHC4	ENSG00000136051.15	ENST00000311317.8:ENST00000550053.5:ENST00000332180.10:ENST00000620430.5:ENST00000547404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	83	2	5.53855	5.714085	5.88962	0.0166261	0.00432809	0.0884836	0.0389438
chr3	15098614	15098694	1694739	0	-	0.4875	(0.485,0.523]	chr3	177105	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBSN	ENSG00000131381.12	ENST00000253699.7:ENST00000476527.6:ENST00000449964.6:ENST00000441057.5:ENST00000449050.5:ENST00000507357.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	80	2	5.623	5.714075	5.80515	0.0192139	0.00153111	0.095424900000000007	0.0191213
chr17	50554731	50554804	6752716	0	+	0.547945	(0.523,0.58]	chr17	681013	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SPATA20	ENSG00000006282.21	ENST00000504334.5:ENST00000619622.4:ENST00000356488.8:ENST00000503127.5:ENST00000006658.11:ENST00000511937.5:ENST00000503063.5:ENST00000634597.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	80	2	5.55012	5.71401	5.8779	0.0217068	0.00121652	0.100615	0.0162693
chr17	76070744	76070844	6974633	0	-	0.54	(0.523,0.58]	chr17	711874	3	SS3_PROX	SS3_PROX:INTRON	SRP68	ENSG00000167881.15	ENST00000307877.7:ENST00000539137.5:ENST00000592704.5:ENST00000591272.1:ENST00000629930.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	80	2	5.55012	5.71401	5.8779	0.0217068	0.00121652	0.100615	0.0162693
chr6	129626652	129626752	3259078	0	-	0.34	(0.33,0.36]	chr6	315400	74	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	2	249	2	3.91172	5.713965	7.51621	0.00107908	7.5644e-4	0.0162519	0.0149203
chr10	46807601	46807701	4484759	0	+	0.55	(0.523,0.58]	chr10	428921	53	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000688259.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	80	2	5.69157	5.71383	5.73609	0.0172851	0.0017613	0.0897247	0.0211077
chr9	100161543	100161643	4198576	0	+	0.45	(0.419,0.45]	chr9	398926	292	INTRON	INTRON	INVS	ENSG00000119509.13	ENST00000262457.7:ENST00000496467.5:ENST00000262456.6:ENST00000466647.5:ENST00000460636.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	87	2	5.1405	5.7138100000000005	6.28712	0.0550015	7.76382e-4	0.153337	0.0118807
chrX	52975057	52975157	8043664	0	-	0.52	(0.485,0.523]	chrX	839375	87	INTRON	INTRON	FAM156A	ENSG00000268350.8	ENST00000611661.4:ENST00000622732.5:ENST00000622323.5:ENST00000612083.5:ENST00000610625.5:ENST00000612915.4:ENST00000615092.4:ENST00000623782.3:ENST00000616592.1:ENST00000619897.4:ENST00000615171.1:ENST00000622430.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	692	2	4.68505	5.71377	6.74249	3.4873e-4	3.45174e-5	0.00674746	0.00326132
chr6	16403064	16403164	3100863	0	-	0.41	(0.39,0.419]	chr6	300842	742	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	5.37172	5.713705	6.05569	0.0367885	0.0012512	0.129052	0.0166412
chr2	232750671	232750770	1055831	0	+	0.343434	(0.33,0.36]	chr2	114812	12	INTRON	INTRON	GIGYF2	ENSG00000204120.16	ENST00000629305.2:ENST00000428883.5:ENST00000409480.5:ENST00000456491.5:ENST00000373563.9:ENST00000409547.5:ENST00000430720.5:ENST00000425040.5:ENST00000421433.5:ENST00000423659.5:ENST00000409196.7:ENST00000409451.7:ENST00000463554.5:ENST00000440945.5:ENST00000429187.5:ENST00000424038.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	184	2	4.38776	5.713665000000001	7.03957	0.0018891	0.00100301	0.0271118	0.0142502
chr5	1054181	1054281	2608362	0	-	0.65	(0.58,1]	chr5	259538	3	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10:ENST00000634447.1	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.59324	5.713495	5.83375	0.00751249	0.0014734	0.0576451	0.0185589
chr10	100998882	100998981	4570110	0	+	0.555556	(0.523,0.58]	chr10	436338	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	LZTS2	ENSG00000107816.17	ENST00000426584.5:ENST00000370223.7:ENST00000489526.1:ENST00000429732.5:ENST00000481129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	175	2	4.55836	5.713395	6.86843	0.00210534	4.89235e-4	0.028892	0.0086136
chrX	19773467	19773567	7991777	0	-	0.49	(0.485,0.523]	chrX	836072	259	INTRON	INTRON	SH3KBP1	ENSG00000147010.18	ENST00000397821.8:ENST00000379698.8:ENST00000379697.7	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	5.57523	5.713265	5.8513	0.0131886	0.00274261	0.0785398	0.028553
chr15	24985806	24985905	6063703	0	+	0.30303	(0.29,0.33]	chr15	595387	35	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	0	80	2	5.55737	5.71315	5.86893	0.0196268	0.00137721	0.095549	0.0178071
chr20	63730821	63730921	7509347	0	+	0.45	(0.419,0.45]	chr20	783515	213	INTRON	INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	84	2	5.32195	5.713025	6.1041	0.0431627	0.00123471	0.138403	0.0164614
chrX	48465714	48465814	8040345	0	-	0.48	(0.45,0.485]	chrX	838612	3	SS5_PROX	SS5_PROX:INTRON	SLC38A5	ENSG00000017483.16	ENST00000595796.5:ENST00000619100.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5:ENST00000416711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	197	2	5.33464	5.71297	6.0913	0.00998516	5.71193e-5	0.0673647	0.00180869
chr8	38767796	38767896	3802233	0	+	0.52	(0.485,0.523]	chr8	365828	100	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	175	2	4.76502	5.7129449999999995	6.66087	0.00309962	2.75605e-4	0.0355173	0.00572715
chr1	759423	759523	379095	0	-	0.5	(0.485,0.523]	chr1	42622	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000230021:ENSG00000228327	ENSG00000230021.10:ENSG00000228327.4	ENST00000634337.2:ENST00000635509.2:ENST00000506640.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript	0	84	2	5.35096	5.712695	6.07443	0.00899749	0.0047171	0.0637469	0.0413976
chr3	149836734	149836834	1595543	0	+	0.38	(0.36,0.39]	chr3	168720	138	INTRON	INTRON	RNF13	ENSG00000082996.20	ENST00000344229.7:ENST00000470151.5:ENST00000466478.5:ENST00000491086.5:ENST00000392894.8:ENST00000467977.5:ENST00000474348.5:ENST00000467996.1:ENST00000468648.5:ENST00000459632.5:ENST00000466795.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	184	2	4.54767	5.712535	6.8774	0.00312796	7.11752e-4	0.0356998	0.0112082
chr4	3361801	3361900	2005054	0	+	0.515152	(0.485,0.523]	chr4	204663	184	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	80	2	5.55054	5.712425	5.87431	0.0215787	0.00127835	0.100612	0.0168904
chr7	135972228	135972328	3719387	0	-	0.45	(0.419,0.45]	chr7	357227	202	INTRON	INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.48746	5.712325	5.93719	0.0176643	0.00532156	0.0909046	0.0446153
chr8	96317860	96317959	3868535	0	+	0.424242	(0.419,0.45]	chr8	371251	79	INTRON	INTRON	PTDSS1	ENSG00000156471.13	ENST00000517309.6:ENST00000337004.8:ENST00000522072.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	84	2	5.48746	5.712325	5.93719	0.0176643	0.00532156	0.0909046	0.0446153
chr7	713596	713694	3525235	0	-	0.602041	(0.58,1]	chr7	340440	5	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000537384.6:ENST00000403562.5:ENST00000417852.5:ENST00000488474.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	80	2	5.21377	5.712225	6.21068	0.0230012	2.44053e-4	0.102982	0.00522003
chr7	222446	222546	3305879	0	+	0.68	(0.58,1]	chr7	320161	131	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.59447	5.712055	5.82964	0.0117666	7.58111e-4	0.0737098	0.0117078
chr1	149495663	149495751	238473	0	+	0.465909	(0.45,0.485]	chr1	26540	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF19	ENSG00000271383.8	ENST00000651566.2:ENST00000611931.4:ENST00000612881.4:ENST00000369227.7	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	5.6428	5.711880000000001	5.78096	0.0166968	0.00265386	0.0884836	0.027979
chr18	39475003	39475102	7149147	0	-	0.464646	(0.45,0.485]	chr18	727068	391	INTRON	INTRON	MIR924HG	ENSG00000267374.3	ENST00000670992.1:ENST00000591629.2:ENST00000662708.1:ENST00000663592.1:ENST00000665749.1:ENST00000668737.1:ENST00000669590.1:ENST00000667816.1:ENST00000666361.1:ENST00000671441.1:ENST00000668052.1:ENST00000669399.1:ENST00000666611.1:ENST00000667009.1:ENST00000666148.1:ENST00000667500.1:ENST00000658829.1:ENST00000665844.1:ENST00000670388.1:ENST00000653594.1:ENST00000660099.1:ENST00000655721.1:ENST00000655349.1:ENST00000665416.1:ENST00000655720.1:ENST00000663128.1:ENST00000668391.1:ENST00000652839.1:ENST00000654975.1:ENST00000667895.1:ENST00000670943.1:ENST00000670383.1:ENST00000652860.1:ENST00000664919.1:ENST00000660405.1:ENST00000667722.1:ENST00000653742.1:ENST00000666181.1:ENST00000654966.1:ENST00000658177.1:ENST00000670121.1:ENST00000669520.1	lncRNA	lncRNA	lncRNA	lncRNA	0	81	2	5.6428	5.711880000000001	5.78096	0.0166968	0.00265386	0.0884836	0.027979
chr12	132537646	132537746	5352992	0	+	0.58	(0.523,0.58]	chr12	523670	93	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.51247	5.71187	5.91127	0.0230387	0.00111349	0.102982	0.0152496
chr2	239269386	239269486	1391402	0	-	0.54	(0.523,0.58]	chr2	148740	178	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	80	2	5.51247	5.71187	5.91127	0.0230387	0.00111349	0.102982	0.0152496
chr21	25952111	25952210	7645952	0	-	0.323232	(0.29,0.33]	chr21	799522	58	INTRON	INTRON	APP	ENSG00000142192.21	ENST00000357903.7:ENST00000346798.8:ENST00000348990.9:ENST00000354192.7:ENST00000359726.7:ENST00000440126.7:ENST00000439274.6:ENST00000358918.7:ENST00000448850.5	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.02395	5.711795	6.39964	0.0445554	3.26144e-4	0.140478	0.00644787
chr3	12964408	12964507	1688773	0	-	0.444444	(0.419,0.45]	chr3	176520	34	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	86	2	5.35317	5.711595000000001	6.07002	0.0143746	0.00714797	0.0821732	0.0541241
chr3	125031786	125031886	1901024	0	-	0.46	(0.45,0.485]	chr3	192925	19	INTRON	INTRON	HEG1	ENSG00000173706.14	ENST00000311127.9	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.34301	5.711455	6.0799	0.0328801	8.68466e-4	0.122593	0.0128564
chr2	231769441	231769540	1383368	0	-	0.434343	(0.419,0.45]	chr2	147865	299	INTRON	INTRON	PDE6D	ENSG00000156973.14	ENST00000287600.9:ENST00000409772.5:ENST00000428104.2:ENST00000486044.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	89	2	5.04043	5.711285	6.38214	0.0625897	6.07209e-4	0.160305	0.0100293
chr3	66499889	66499989	1817113	0	-	0.64	(0.58,1]	chr3	187448	3	SS5_PROX	SS5_PROX:INTRON	LRIG1	ENSG00000144749.14	ENST00000273261.8:ENST00000383703.3:ENST00000498287.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	162	2	4.63344	5.711175	6.7889099999999996	0.00104954	2.48975e-4	0.0194601	0.00530167
chr12	132530478	132530578	5352920	0	+	0.68	(0.58,1]	chr12	523670	21	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.41094	5.71114	6.01134	0.00531709	0.00240622	0.047841	0.0261006
chr16	75233935	75234035	6644445	0	-	0.67	(0.58,1]	chr16	664404	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000566982.1:ENST00000563038.5:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	80	2	5.41094	5.71114	6.01134	0.00531709	0.00240622	0.047841	0.0261006
chr7	1016425	1016525	3526387	0	-	0.65	(0.58,1]	chr7	340572	59	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	80	2	5.41094	5.71114	6.01134	0.00531709	0.00240622	0.047841	0.0261006
chr16	89429256	89429356	6661126	0	-	0.53	(0.523,0.58]	chr16	666747	105	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	664	2	4.37409	5.71097	7.04785	0.00194969	1.5896e-7	0.0276373	3.12608e-5
chr1	17674485	17674585	54956	0	+	0.67	(0.58,1]	chr1	5603	95	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	407	2	5.63039	5.71096	5.79153	1.63982e-4	4.91044e-6	0.00716963	3.11791e-4
chr16	11703469	11703569	6549130	0	-	0.43	(0.419,0.45]	chr16	651880	4	SS5_PROX	SS5_PROX:INTRON	TXNDC11	ENSG00000153066.13	ENST00000283033.10:ENST00000356957.7:ENST00000575591.1:ENST00000576969.5:ENST00000571882.1:ENST00000573174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	82	2	5.59315	5.710815	5.82848	0.029494	0.00242141	0.116079	0.0261589
chr11	57315755	57315853	5038379	0	-	0.612245	(0.58,1]	chr11	488060	15	INTRON	INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	84	2	5.20223	5.710375	6.21852	0.00411607	0.00350812	0.0379357	0.0374453
chr20	8263811	8263911	7427900	0	+	0.46	(0.45,0.485]	chr20	773686	70	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	225	2	4.6417	5.710265	6.77883	0.00307653	1.23522e-4	0.0354212	0.00321265
chr1	42819105	42819204	105521	0	+	0.474747	(0.45,0.485]	chr1	12744	9	INTRON	INTRON	ERMAP	ENSG00000164010.15	ENST00000372517.8:ENST00000643061.1:ENST00000645239.1:ENST00000647120.1:ENST00000487556.6:ENST00000642150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	178	2	4.57535	5.71022	6.84509	0.00259845	5.36627e-4	0.0322672	0.0091711
chr11	68352006	68352105	4882478	0	+	0.616162	(0.58,1]	chr11	470548	34	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	87	2	5.08534	5.709855	6.33437	0.00549379	0.00276493	0.0454065	0.0332418
chr2	55023488	55023588	1148262	0	-	0.46	(0.45,0.485]	chr2	125466	91	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	5.2551	5.70975	6.1644	0.0373953	6.92954e-4	0.130656	0.0109657
chr7	6598738	6598836	3313325	0	+	0.44898	(0.419,0.45]	chr7	321398	38	INTRON	INTRON	C7orf26	ENSG00000146576.13	ENST00000344417.10:ENST00000359073.9:ENST00000472693.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	82	2	5.55739	5.709614999999999	5.86184	0.0310506	0.00223565	0.119758	0.024843
chr11	901847	901947	4970034	0	-	0.64	(0.58,1]	chr11	480934	3	SS5_PROX	SS5_PROX:INTRON	CHID1	ENSG00000177830.18	ENST00000323578.13:ENST00000449825.5:ENST00000454838.6:ENST00000429789.6:ENST00000528581.5:ENST00000436108.6:ENST00000526714.5:ENST00000524832.5:ENST00000531859.5:ENST00000534254.5:ENST00000528426.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	77	2	5.51813	5.70934	5.90055	0.013519	6.1741e-4	0.0792526	0.0101143
chr20	58689045	58689144	7498568	0	+	0.59596	(0.58,1]	chr20	781977	97	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1:ENST00000413559.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	0	77	2	5.70191	5.709095	5.71628	0.00964351	0.00104668	0.0659937	0.0146403
chr7	220850	220950	3305863	0	+	0.7	(0.58,1]	chr7	320161	115	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.70191	5.709095	5.71628	0.00964351	0.00104668	0.0659937	0.0146403
chr2	138440189	138440288	1277872	0	-	0.444444	(0.419,0.45]	chr2	137686	32	INTRON	INTRON	SPOPL-DT	ENSG00000228043.5	ENST00000431985.5:ENST00000414911.1	lncRNA	lncRNA	lncRNA	lncRNA	1	186	2	4.70351	5.708885	6.71426	0.0050028	5.07558e-4	0.0463896	0.00883248
chr1	21605276	21605372	419499	0	-	0.572917	(0.523,0.58]	chr1	48926	10	INTRON	INTRON	RAP1GAP	ENSG00000076864.21	ENST00000374765.9:ENST00000471600.6:ENST00000374761.6:ENST00000374763.6:ENST00000542643.6:ENST00000611549.4:ENST00000495204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	80	2	5.47382	5.708855	5.94389	0.0244797	0.0010207	0.106683	0.0143498
chr10	102646619	102646719	4576490	0	+	0.56	(0.523,0.58]	chr10	437280	4	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	80	2	5.47382	5.708855	5.94389	0.0244797	0.0010207	0.106683	0.0143498
chr17	748974	749068	6824477	0	-	0.574468	(0.523,0.58]	chr17	689919	11	UTR5	UTR5:EXON_MRNA:INTRON	GEMIN4	ENSG00000179409.11	ENST00000319004.6:ENST00000576778.1:ENST00000437269.1:ENST00000573482.5:ENST00000570364.5:ENST00000576383.1:ENST00000574958.1	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.26332	5.708495	6.15367	0.0337698	5.76607e-4	0.124319	0.00963379
chr12	50643146	50643245	5230841	0	+	0.323232	(0.29,0.33]	chr12	507719	19	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5:ENST00000546719.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	80	2	5.48107	5.707995	5.93492	0.0222022	0.00115909	0.101857	0.0157704
chr12	23940775	23940875	5388433	0	-	0.35	(0.33,0.36]	chr12	528193	198	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000537393.5:ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2:ENST00000538083.1:ENST00000536729.2:ENST00000446891.7:ENST00000536850.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	316	2	4.55809	5.707965	6.85784	0.00265287	8.56555e-5	0.0326475	0.00244029
chr22	50675551	50675651	7754919	0	+	0.56	(0.523,0.58]	chr22	812694	3	SS5_PROX	SS5_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	82	2	5.44845	5.7075949999999995	5.96674	0.0109075	0.00361636	0.0707085	0.0342681
chr6	43116578	43116678	2918010	0	+	0.55	(0.523,0.58]	chr6	286740	392	INTRON	INTRON	PTK7	ENSG00000112655.16	ENST00000476760.1:ENST00000230419.9:ENST00000470019.5:ENST00000471863.5:ENST00000230418.8:ENST00000345201.6:ENST00000349241.6:ENST00000352931.6:ENST00000487673.5:ENST00000481273.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	82	2	5.44845	5.7075949999999995	5.96674	0.0109075	0.00361636	0.0707085	0.0342681
chr1	228156249	228156348	358149	0	+	0.444444	(0.419,0.45]	chr1	40434	59	INTRON	INTRON	GJC2	ENSG00000198835.4	ENST00000366714.3	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.52073	5.707585	5.89444	0.0327198	0.00206691	0.122543	0.0235758
chr5	136139049	136139148	2541337	0	+	0.424242	(0.419,0.45]	chr5	252228	47	INTRON	INTRON	SMAD5	ENSG00000113658.18	ENST00000545279.6:ENST00000545620.5:ENST00000511116.5:ENST00000507118.5:ENST00000514777.1:ENST00000509297.6:ENST00000509962.5:ENST00000515005.1:ENST00000506223.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	82	2	5.52073	5.707585	5.89444	0.0327198	0.00206691	0.122543	0.0235758
chr8	143607632	143607714	4097299	0	-	0.512195	(0.485,0.523]	chr8	389391	1	SS5_PROX	SS5_PROX:INTRON	PYCR3	ENSG00000104524.14	ENST00000495276.6:ENST00000220966.10:ENST00000447926.6:ENST00000433751.5:ENST00000377579.7:ENST00000462036.5:ENST00000482616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	176	2	4.89865	5.707409999999999	6.51617	0.00406194	1.85073e-4	0.0413652	0.00428663
chr6	47624716	47624814	2923911	0	+	0.316327	(0.29,0.33]	chr6	287910	6	UTR3	UTR3:EXON_MRNA	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	2	285	2	3.68944	5.7073849999999995	7.72533	0.00685228	5.85286e-6	0.0550976	3.52317e-4
chr20	348492	348577	7414002	0	+	0.470588	(0.45,0.485]	chr20	772227	1	SS5_PROX	SS5_PROX:INTRON	NRSN2	ENSG00000125841.13	ENST00000609179.5:ENST00000492242.5:ENST00000382291.7:ENST00000609504.5:ENST00000382285.7:ENST00000608467.5:ENST00000470439.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	479	2	5.08894	5.7073599999999995	6.32578	0.00129423	2.48719e-6	0.0219851	1.93655e-4
chr1	51663235	51663335	123031	0	+	0.39	(0.36,0.39]	chr1	15328	108	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	83	2	5.49642	5.70735	5.91828	0.0158902	0.00476539	0.0859576	0.0414441
chr19	941421	941521	7185260	0	+	0.66	(0.58,1]	chr19	730741	83	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	161	2	4.70869	5.707	6.70531	0.00125905	1.95782e-4	0.0215793	0.00445752
chr19	45043191	45043290	7270039	0	+	0.484848	(0.45,0.485]	chr19	746627	25	INTRON	INTRON	CLASRP	ENSG00000104859.15	ENST00000221455.8:ENST00000391953.8:ENST00000591410.5:ENST00000592056.5:ENST00000391952.7:ENST00000588936.5:ENST00000544944.6:ENST00000587112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	181	2	4.37217	5.7069849999999995	7.0418	0.00179449	9.45601e-4	0.0262815	0.0136002
chr16	84126696	84126794	6649320	0	-	0.5	(0.485,0.523]	chr16	665183	16	INTRON	INTRON	HSDL1	ENSG00000103160.12	ENST00000219439.9:ENST00000434463.7	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.65601	5.706925	5.75784	0.0154142	0.00224147	0.0849828	0.024843
chr7	74499601	74499701	3391823	0	+	0.36	(0.33,0.36]	chr7	327343	451	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	3	659	2	4.76599	5.70676	6.64753	0.00105263	1.13035e-6	0.0194688	1.12814e-4
chr19	58326722	58326822	7412932	0	-	0.63	(0.58,1]	chr19	772007	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000283103	ENSG00000283103.4	ENST00000664481.1:ENST00000634676.2:ENST00000659246.1:ENST00000671228.1:ENST00000658331.1:ENST00000669883.1:ENST00000651375.3:ENST00000669440.2:ENST00000666049.1:ENST00000687313.1	lncRNA	lncRNA	lncRNA	lncRNA	0	79	2	5.45872	5.70663	5.95454	0.0059453	0.00211999	0.0506158	0.0239744
chr3	37861879	37861959	1443261	0	+	0.8375	(0.58,1]	chr3	153952	1	UTR5	UTR5:EXON_MRNA	CTDSPL	ENSG00000144677.15	ENST00000273179.10	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.45872	5.70663	5.95454	0.0059453	0.00211999	0.0506158	0.0239744
chr4	1327126	1327226	1995310	0	+	0.6	(0.58,1]	chr4	203265	1	SS3_PROX	SS3_PROX:INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	77	2	5.47839	5.7065649999999994	5.93474	0.0145198	5.58693e-4	0.0823104	0.00944382
chr6	16759856	16759956	3104452	0	-	0.67	(0.58,1]	chr6	300918	4	SS5_PROX	SS5_PROX:INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000675689.1:ENST00000473388.6:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1:ENST00000676138.1:ENST00000467008.5:ENST00000498374.1:ENST00000492857.1:ENST00000479680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	219	2	4.04274	5.70613	7.36952	3.85838e-4	2.84773e-4	0.00957277	0.00727473
chr20	3344530	3344630	7516233	0	-	0.33	(0.29,0.33]	chr20	784720	4	INTRON	INTRON	DNAAF9	ENSG00000088854.13	ENST00000252032.10	protein_coding	protein_coding	protein_coding	protein_coding	1	213	2	4.55544	5.705985	6.85653	0.00298149	8.64734e-5	0.0347875	0.00245651
chr22	24985649	24985748	7698881	0	+	0.515152	(0.485,0.523]	chr22	805865	325	INTRON	INTRON	KIAA1671	ENSG00000197077.14	ENST00000358431.8:ENST00000406486.8	protein_coding	protein_coding	protein_coding	protein_coding	1	178	2	4.37429	5.70585	7.03741	0.0015038	8.506e-4	0.0239138	0.0126678
chr3	78697046	78697146	1834468	0	-	0.35	(0.33,0.36]	chr3	188581	33	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5:ENST00000484514.1:ENST00000488735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	87	2	5.22448	5.705845	6.18721	0.00877878	0.00791583	0.0630845	0.057762
chr8	97691688	97691787	3875473	0	+	0.363636	(0.36,0.39]	chr8	371456	1	INTRON	INTRON	MTDH	ENSG00000147649.10	ENST00000336273.8:ENST00000519934.5:ENST00000519293.1:ENST00000521933.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	82	2	5.4139	5.7054849999999995	5.99707	0.0340874	0.00143949	0.125059	0.0183435
chr11	70811968	70812068	5062403	0	-	0.48	(0.45,0.485]	chr11	492713	44	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	177	2	4.65902	5.705415	6.75181	0.00308946	4.2306e-4	0.0354967	0.00776857
chr18	48658656	48658756	7057854	0	+	0.42	(0.419,0.45]	chr18	720311	216	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1:ENST00000589585.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	93	2	4.87598	5.70535	6.53472	0.0768574	4.06527e-4	0.174882	0.00755833
chr1	7499900	7500000	15609	0	+	0.5	(0.485,0.523]	chr1	1895	316	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	5.14248	5.705055	6.26763	0.00761903	0.00639185	0.0561937	0.0529032
chr17	749068	749162	6824478	0	-	0.553191	(0.523,0.58]	chr17	689919	12	UTR5	UTR5:EXON_MRNA:INTRON	GEMIN4	ENSG00000179409.11	ENST00000319004.6:ENST00000576778.1:ENST00000437269.1:ENST00000573482.5:ENST00000570364.5:ENST00000576383.1:ENST00000574958.1	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.43411	5.704955	5.9758	0.026041	9.36996e-4	0.109673	0.0135546
chr1	43965658	43965751	110818	0	+	0.494624	(0.485,0.523]	chr1	13723	10	INTRON	INTRON	IPO13	ENSG00000117408.11	ENST00000372343.8	protein_coding	protein_coding	protein_coding	protein_coding	1	175	2	4.85547	5.7046	6.55373	0.00378829	2.10628e-4	0.0396337	0.00469277
chr1	147632162	147632262	580953	0	-	0.43	(0.419,0.45]	chr1	66628	7	INTRON	INTRON	ACP6	ENSG00000162836.12	ENST00000609196.5	protein_coding	protein_coding	protein_coding	protein_coding	1	194	2	4.1811	5.70453	7.22796	0.00204103	0.00199987	0.0283511	0.0230381
chr18	13446315	13446413	7025039	0	+	0.438776	(0.419,0.45]	chr18	717583	21	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000610087.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	84	2	5.44407	5.70441	5.96475	0.0169309	0.00585948	0.088829	0.0474117
chr4	143336761	143336846	2136938	0	+	0.6	(0.58,1]	chr4	217042	1	UTR5	UTR5:EXON_MRNA	GAB1	ENSG00000109458.9	ENST00000262995.8	protein_coding	protein_coding	protein_coding	protein_coding	1	191	2	4.27956	5.70423	7.1289	0.00349053	1.22303e-5	0.0379065	5.9245e-4
chr6	16367367	16367467	3100506	0	-	0.42	(0.419,0.45]	chr6	300842	385	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8	protein_coding	protein_coding	protein_coding	protein_coding	2	249	2	4.20301	5.70402	7.20503	0.00212618	5.76436e-4	0.0289767	0.00963379
chr13	98538796	98538896	5747909	0	-	0.51	(0.485,0.523]	chr13	563357	169	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	80	2	5.61619	5.70293	5.78967	0.0146211	0.00247695	0.0826064	0.0266492
chr12	28396597	28396697	5196661	0	+	0.46	(0.45,0.485]	chr12	505461	48	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000545336.5:ENST00000536442.6:ENST00000543809.5:ENST00000545737.5:ENST00000381259.5:ENST00000540401.5:ENST00000539904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	84	2	5.16149	5.702855	6.24422	0.0427653	5.58345e-4	0.13762	0.00944382
chr3	65864914	65865014	1814124	0	-	0.39	(0.36,0.39]	chr3	187296	1444	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	81	2	5.6372	5.702775	5.76835	0.024533	0.00252253	0.106796	0.0270357
chr1	50819661	50819761	478332	0	-	0.16	[0,0.29]	chr1	56828	176	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	78	2	5.51146	5.702745	5.89403	0.0147753	9.73966e-4	0.0829204	0.0139544
chr7	112435621	112435721	3448397	0	+	0.48	(0.45,0.485]	chr7	333986	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	IFRD1	ENSG00000006652.15	ENST00000675578.1:ENST00000432734.1:ENST00000621379.4:ENST00000005558.8:ENST00000443101.6	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.57854	5.70272	5.8269	0.0230065	0.00167585	0.102982	0.0203806
chr16	85593925	85594025	6519012	0	+	0.63	(0.58,1]	chr16	646396	372	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.63543	5.702385	5.76934	0.00849371	0.00131165	0.0617717	0.0171898
chr10	18562264	18562364	4642351	0	-	0.43	(0.419,0.45]	chr10	443321	99	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	97	2	4.91849	5.702260000000001	6.48603	0.0174488	0.00734278	0.0928044	0.0570055
chr17	15464763	15464863	6860082	0	-	0.58	(0.523,0.58]	chr17	695067	113	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	627	2	4.65596	5.702025000000001	6.74809	0.00110234	4.42855e-7	0.020005	6.14597e-5
chr7	143882235	143882326	3729983	0	-	0.549451	(0.523,0.58]	chr7	358299	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TCAF1	ENSG00000198420.10	ENST00000479870.6:ENST00000355951.2:ENST00000392900.3:ENST00000460532.5:ENST00000491908.1:ENST00000478172.1:ENST00000485416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	85	2	5.25403	5.70177	6.14951	0.00793972	0.00573579	0.0596361	0.0467736
chr2	201268818	201268913	991910	0	+	0.452632	(0.45,0.485]	chr2	109043	17	INTRON	INTRON	CASP8	ENSG00000064012.24	ENST00000392263.6:ENST00000432109.6:ENST00000696067.1:ENST00000264275.9:ENST00000471383.5:ENST00000450491.6:ENST00000440732.6:ENST00000392258.7:ENST00000447616.6:ENST00000413726.6:ENST00000358485.8:ENST00000696087.1:ENST00000696068.1:ENST00000696085.1:ENST00000437283.5:ENST00000490412.5:ENST00000339403.6:ENST00000323492.11:ENST00000673742.1:ENST00000429881.2:ENST00000696069.1:ENST00000444430.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	86	2	5.23735	5.70143	6.16551	0.00879664	0.00687715	0.0630845	0.0526888
chr16	4082770	4082870	6541458	0	-	0.57	(0.523,0.58]	chr16	650517	287	INTRON	INTRON	ADCY9	ENSG00000162104.10	ENST00000294016.8:ENST00000571467.1:ENST00000572288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	212	2	4.438	5.701145	6.96429	0.00408988	5.38186e-5	0.0413652	0.0017322
chr12	123654324	123654423	5347074	0	+	0.424242	(0.419,0.45]	chr12	522778	12	INTRON	INTRON	GTF2H3	ENSG00000111358.14	ENST00000618160.4:ENST00000542279.5:ENST00000543341.7:ENST00000228955.11:ENST00000538845.5:ENST00000539994.5:ENST00000537695.5:ENST00000536375.5:ENST00000543415.5:ENST00000538533.5:ENST00000543154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	82	2	5.44447	5.70099	5.95751	0.0364384	0.0017735	0.128173	0.02121
chr19	1997563	1997663	7307769	0	-	0.67	(0.58,1]	chr19	753492	1	SS3_PROX	SS3_PROX:INTRON	BTBD2	ENSG00000133243.10	ENST00000255608.9:ENST00000589200.3:ENST00000590646.5:ENST00000587742.5:ENST00000588395.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	78	2	5.30747	5.700985	6.0945	0.0196049	3.47472e-4	0.0955413	0.00673552
chr2	78139629	78139729	1208846	0	-	0.35	(0.33,0.36]	chr2	130071	1994	INTRON	INTRON	ENSG00000227088	ENSG00000227088.2	ENST00000667782.1	lncRNA	lncRNA	lncRNA	lncRNA	2	479	2	5.40063	5.70087	6.00111	7.25019e-4	8.75427e-6	0.0158761	4.66892e-4
chr16	75049784	75049883	6492417	0	+	0.444444	(0.419,0.45]	chr16	645343	25	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	186	2	4.44849	5.700825	6.95316	0.00331448	0.00100323	0.0368376	0.0142509
chr2	235552032	235552132	1063118	0	+	0.62	(0.58,1]	chr2	115656	271	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	82	2	5.25731	5.70079	6.14427	0.00407804	0.00358178	0.0413652	0.0342681
chr10	122115330	122115430	4599653	0	+	0.51	(0.485,0.523]	chr10	439774	17	INTRON	INTRON	TACC2	ENSG00000138162.19	ENST00000369005.6:ENST00000513429.5:ENST00000515603.5:ENST00000515273.5:ENST00000334433.7:ENST00000358010.5:ENST00000453444.6:ENST00000493951.5:ENST00000369001.5:ENST00000492237.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	83	2	5.17012	5.70076	6.2314	0.038581	4.86354e-4	0.131324	0.00857996
chr17	77350599	77350699	6803865	0	+	0.51	(0.485,0.523]	chr17	686742	264	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	637	2	5.21145	5.700285	6.18912	1.13589e-4	1.63434e-5	0.00594264	7.27296e-4
chr19	1414052	1414151	7187487	0	+	0.626263	(0.58,1]	chr19	731286	36	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	78	2	5.50497	5.70019	5.89541	0.0066708	0.00187297	0.0540577	0.0219434
chr19	5815007	5815106	7195536	0	+	0.707071	(0.58,1]	chr19	733105	92	INTRON	INTRON	NRTN	ENSG00000171119.3	ENST00000303212.3	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.50497	5.70019	5.89541	0.0066708	0.00187297	0.0540577	0.0219434
chr11	73496876	73496976	5074999	0	-	0.47	(0.45,0.485]	chr11	493745	280	INTRON	INTRON	FAM168A	ENSG00000054965.11	ENST00000064778.8:ENST00000356467.5:ENST00000450446.6:ENST00000632101.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	183	2	4.26942	5.70018	7.13094	0.00151409	0.00125147	0.0240218	0.0166412
chr10	18563663	18563763	4642365	0	-	0.39	(0.36,0.39]	chr10	443321	113	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	5.69574	5.7001550000000005	5.70457	0.022152	0.00299965	0.101784	0.030427
chrX	9492595	9492695	7842720	0	+	0.55	(0.523,0.58]	chrX	822398	268	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.39327	5.70014	6.00701	0.0277354	8.61362e-4	0.112851	0.0127848
chr19	4335138	4335237	7312822	0	-	0.50505	(0.485,0.523]	chr19	754660	7	INTRON	INTRON	STAP2	ENSG00000178078.12	ENST00000594605.6:ENST00000600324.5:ENST00000599736.5:ENST00000601482.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	81	2	5.48966	5.70003	5.9104	0.0119344	0.0033837199999999998	0.0741726	0.0328791
chr5	59427295	59427395	2668406	0	-	0.39	(0.36,0.39]	chr5	264339	705	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	83	2	5.45303	5.699705	5.9463800000000004	0.0151971	0.00525731	0.084474	0.044445
chr22	15817404	15817499	7682897	0	+	0.536842	(0.523,0.58]	chr22	803564	15	INTRON	INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000383038.7:ENST00000447898.5	lncRNA	lncRNA	lncRNA	lncRNA	0	80	2	5.5788	5.699595	5.82039	0.0139724	0.00262418	0.0805959	0.0278348
chr2	232883010	232883110	1383655	0	-	0.56	(0.523,0.58]	chr2	147907	3	SS5_PROX	SS5_PROX:INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000424488.5:ENST00000489127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	86	2	5.20104	5.699389999999999	6.19774	0.0072907	0.00648051	0.0567247	0.0503748
chr22	24307528	24307627	7696543	0	+	0.323232	(0.29,0.33]	chr22	805638	27	INTRON	INTRON	SPECC1L:SPECC1L-ADORA2A	ENSG00000100014.20:ENSG00000258555.6	ENST00000437398.5:ENST00000421374.5:ENST00000314328.14:ENST00000651059.1:ENST00000541492.1:ENST00000416735.5:ENST00000358654.2:ENST00000440893.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	80	2	5.40051	5.69927	5.99803	0.0252356	9.81074e-4	0.108065	0.0140347
chr5	139653163	139653263	2549692	0	+	0.61	(0.58,1]	chr5	253168	16	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	2	216	2	4.10709	5.699245	7.2914	3.40674e-4	3.14274e-4	0.010549	0.00628721
chr2	233176665	233176764	1058400	0	+	0.464646	(0.45,0.485]	chr2	115144	52	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493632.5:ENST00000465281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	80	2	5.68155	5.69907	5.71659	0.018513	0.00241241	0.0928429	0.0261086
chr11	18011514	18011611	5015374	0	-	0.402062	(0.39,0.419]	chr11	484704	10	INTRON	INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528200.5:ENST00000532265.5:ENST00000529728.5:ENST00000530613.5:ENST00000532389.5:ENST00000530925.5:ENST00000533328.5:ENST00000532212.5:ENST00000524716.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	306	2	3.94792	5.698845	7.44977	0.00586847	2.66913e-5	0.0506158	0.00103407
chr10	18558566	18558666	4642314	0	-	0.43	(0.419,0.45]	chr10	443321	62	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	85	2	5.35317	5.698790000000001	6.04441	0.0149622	0.00714797	0.0835955	0.0541241
chr13	36338949	36339048	5689738	0	-	0.444444	(0.419,0.45]	chr13	558366	22	INTRON	INTRON	SPART	ENSG00000133104.14	ENST00000438666.7:ENST00000355182.8:ENST00000451493.5:ENST00000650221.1:ENST00000494062.2:ENST00000495510.1:ENST00000494703.1:ENST00000476377.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	85	2	5.35317	5.698790000000001	6.04441	0.0149622	0.00714797	0.0835955	0.0541241
chr17	16016413	16016513	6684520	0	+	0.33	(0.29,0.33]	chr17	670877	95	INTRON	INTRON	TTC19	ENSG00000011295.16	ENST00000475723.5:ENST00000261647.10:ENST00000497842.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	80	2	5.56987	5.69877	5.82767	0.0124924	0.0029307	0.0761905	0.0298918
chr21	38808763	38808854	7620630	0	+	0.450549	(0.45,0.485]	chr21	796142	1	INTRON	INTRON	ETS2	ENSG00000157557.13	ENST00000360214.8:ENST00000665212.1:ENST00000667466.1:ENST00000360938.8:ENST00000432278.5:ENST00000666778.1:ENST00000653642.1	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	5.18438	5.698665	6.21295	0.00810629	0.00773818	0.0602166	0.0568726
chr6	158246091	158246191	3060976	0	+	0.42	(0.419,0.45]	chr6	297572	134	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	3	302	2	4.14676	5.698645	7.25053	0.00196039	3.57937e-4	0.0277361	0.00690411
chr2	55024086	55024186	1148268	0	-	0.41	(0.39,0.419]	chr2	125466	97	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	1	185	2	4.36902	5.69864	7.02826	0.00245351	0.00115295	0.0312688	0.0157112
chr5	79061238	79061337	2707353	0	-	0.444444	(0.419,0.45]	chr5	266844	50	INTRON	INTRON	DMGDH	ENSG00000132837.15	ENST00000255189.8:ENST00000518477.5:ENST00000517853.5:ENST00000521052.5:ENST00000524206.1:ENST00000520388.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	88	2	5.20508	5.698359999999999	6.19164	0.0118587	0.00979452	0.0740271	0.0664239
chr4	884785	884885	2178450	0	-	0.63	(0.58,1]	chr4	220625	3	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.39546	5.698125	6.00079	0.0168207	4.59827e-4	0.0884836	0.00821903
chr18	49375147	49375247	7161432	0	-	0.49	(0.485,0.523]	chr18	727942	1	SS5_PROX	SS5_PROX:INTRON	DYM	ENSG00000141627.14	ENST00000675505.1:ENST00000269445.10:ENST00000442713.6:ENST00000418472.6:ENST00000578396.1:ENST00000578596.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	86	2	5.19749	5.69783	6.19817	0.00723584	0.00672953	0.0565323	0.0519464
chr14	23512873	23512973	5757079	0	+	0.55	(0.523,0.58]	chr14	564956	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZFHX2-AS1	ENSG00000157306.14	ENST00000556354.5:ENST00000556613.1:ENST00000553985.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	79	2	5.5868	5.697765	5.80873	0.020474	0.00145893	0.0979776	0.0184991
chr9	135848438	135848538	4431231	0	-	0.56	(0.523,0.58]	chr9	423507	205	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.5868	5.697765	5.80873	0.020474	0.00145893	0.0979776	0.0184991
chr10	79165129	79165229	4533008	0	+	0.56	(0.523,0.58]	chr10	432438	26	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.62258	5.697725	5.77287	0.0193313	0.00160162	0.0954446	0.0197827
chr16	85232865	85232965	6515397	0	+	0.52	(0.485,0.523]	chr16	646377	51	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	265	2	3.49584	5.697725	7.89961	0.00279187	2.63582e-4	0.0288863	0.00919874
chr13	112973341	112973440	5655354	0	+	0.292929	(0.29,0.33]	chr13	555120	35	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.39334	5.697475000000001	6.00161	0.00923185	0.00448059	0.0644666	0.0398484
chr11	3839467	3839567	4975290	0	-	0.48	(0.45,0.485]	chr11	481754	17	INTRON	INTRON	RHOG	ENSG00000177105.10	ENST00000351018.5:ENST00000396978.1	protein_coding	protein_coding	protein_coding	protein_coding	1	177	2	4.50473	5.697145000000001	6.88956	0.00239127	6.54581e-4	0.0308863	0.0105726
chr10	18559665	18559765	4642325	0	-	0.39	(0.36,0.39]	chr10	443321	73	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	5.26508	5.697095	6.12911	0.0113159	0.00795848	0.0722887	0.0578938
chr11	70789448	70789548	5062176	0	-	0.58	(0.523,0.58]	chr11	492701	716	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	79	2	5.65749	5.69679	5.73609	0.0182707	0.0017613	0.0921579	0.0211077
chr18	76373666	76373766	7178855	0	-	0.53	(0.523,0.58]	chr18	730074	17	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7:ENST00000617840.1:ENST00000542818.1	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.65749	5.69679	5.73609	0.0182707	0.0017613	0.0921579	0.0211077
chr7	47276419	47276516	3586541	0	-	0.525773	(0.523,0.58]	chr7	345959	14	UTR3	UTR3:EXON_MRNA	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000428457.1	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.65749	5.69679	5.73609	0.0182707	0.0017613	0.0921579	0.0211077
chr16	81635974	81636074	6509657	0	+	0.49	(0.485,0.523]	chr16	645926	139	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.39869	5.696715	5.99474	0.0103305	0.00421243	0.0684871	0.0380601
chr2	152499251	152499351	927104	0	+	0.43	(0.419,0.45]	chr2	103058	1632	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.23407	5.696435	6.1588	0.0486006	0.00107628	0.145074	0.0148869
chr10	76091276	76091376	4527086	0	+	0.43	(0.419,0.45]	chr10	432311	321	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	82	2	5.40477	5.69641	5.98805	0.0385125	0.00164584	0.131324	0.0202325
chr2	206804188	206804287	1002085	0	+	0.444444	(0.419,0.45]	chr2	110058	25	INTRON	INTRON	ENSG00000229321	ENSG00000229321.2	ENST00000658889.1:ENST00000658291.1	lncRNA	lncRNA	lncRNA	lncRNA	0	82	2	5.40477	5.69641	5.98805	0.0385125	0.00164584	0.131324	0.0202325
chr22	50681286	50681383	7754982	0	+	0.515464	(0.485,0.523]	chr22	812716	15	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	79	2	5.58723	5.69619	5.80515	0.0203514	0.00153111	0.0979211	0.0191213
chr22	42649094	42649194	7821323	0	-	0.77	(0.58,1]	chr22	820392	4	SS5_PROX	SS5_PROX:INTRON	CYB5R3	ENSG00000100243.22	ENST00000693367.1:ENST00000352397.10:ENST00000361740.9:ENST00000692152.1:ENST00000693363.1:ENST00000689795.1:ENST00000686523.1:ENST00000407332.6:ENST00000687183.1:ENST00000691295.1:ENST00000690835.1:ENST00000689195.1:ENST00000688244.1:ENST00000690993.1:ENST00000689239.1:ENST00000692344.1:ENST00000686129.1:ENST00000466276.2:ENST00000693716.1:ENST00000688004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	92	2	4.89007	5.696185	6.5023	0.00872525	0.00194503	0.0612699	0.0275844
chr3	123093240	123093340	1546370	0	+	0.48	(0.45,0.485]	chr3	164147	4	INTRON	INTRON	PDIA5	ENSG00000065485.20	ENST00000316218.12:ENST00000489923.5:ENST00000484644.5:ENST00000495004.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	81	2	5.51989	5.69616	5.87243	0.0143887	0.00357389	0.0821732	0.0342681
chr13	33588816	33588916	5688459	0	-	0.44	(0.419,0.45]	chr13	558262	641	INTRON	INTRON	ENSG00000230490	ENSG00000230490.4	ENST00000686875.1:ENST00000454681.2	lncRNA	lncRNA	lncRNA	lncRNA	0	94	2	4.81671	5.696104999999999	6.5755	0.08258	3.64701e-4	0.179396	0.00699922
chr16	74932580	74932680	6643623	0	-	0.46	(0.45,0.485]	chr16	664275	19	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568462.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	80	2	5.6428	5.695965	5.74913	0.017574	0.00265386	0.0906595	0.027979
chr6	15433431	15433531	2858383	0	+	0.46	(0.45,0.485]	chr6	279190	227	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.6428	5.695965	5.74913	0.017574	0.00265386	0.0906595	0.027979
chr6	131836385	131836485	3008305	0	+	0.42	(0.419,0.45]	chr6	294175	99	INTRON	INTRON	ENPP1	ENSG00000197594.14	ENST00000486853.1:ENST00000647893.1:ENST00000513998.5:ENST00000650507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	82	2	5.57051	5.695935	5.82136	0.0210659	0.00441471	0.0996078	0.0393688
chr8	23250576	23250675	3773198	0	+	0.565657	(0.523,0.58]	chr8	363316	8	INTRON	INTRON	CHMP7	ENSG00000147457.14	ENST00000397677.6:ENST00000313219.8:ENST00000519414.5:ENST00000517325.5:ENST00000519529.1:ENST00000519984.1:ENST00000519503.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	79	2	5.51247	5.695185	5.8779	0.0230387	0.00121652	0.102982	0.0162693
chr19	48916115	48916212	7280509	0	+	0.360825	(0.36,0.39]	chr19	748064	22	INTRON	INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000424608.1:ENST00000465524.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	84	2	5.36211	5.694825	6.02754	0.0133452	0.00643924	0.0789398	0.0503748
chr10	170406	170506	4436359	0	+	0.37	(0.36,0.39]	chr10	424538	345	INTRON	INTRON	ZMYND11	ENSG00000015171.20	ENST00000397962.8:ENST00000439456.5:ENST00000309776.8:ENST00000397959.7:ENST00000509513.6:ENST00000381591.5:ENST00000381604.9:ENST00000602682.6:ENST00000381607.8:ENST00000403354.5:ENST00000627286.2:ENST00000402736.5:ENST00000397955.7	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	5.4536	5.694465	5.93533	0.0321864	0.00167855	0.121593	0.0203806
chr18	32760345	32760445	7143317	0	-	0.37	(0.36,0.39]	chr18	726510	179	INTRON	INTRON	KLHL14	ENSG00000197705.10	ENST00000359358.9:ENST00000358095.4	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	5.4536	5.694465	5.93533	0.0321864	0.00167855	0.121593	0.0203806
chr14	91466916	91467013	6039459	0	-	0.463918	(0.45,0.485]	chr14	592213	1	INTRON	INTRON	PPP4R3A	ENSG00000100796.18	ENST00000554943.6:ENST00000554684.5:ENST00000555462.5:ENST00000554308.5:ENST00000554390.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	1	176	2	4.75341	5.694089999999999	6.63477	0.00382972	3.22562e-4	0.0399078	0.00638231
chrX	48465814	48465914	8040346	0	-	0.55	(0.523,0.58]	chrX	838612	4	SS5_PROX	SS5_PROX:INTRON	SLC38A5	ENSG00000017483.16	ENST00000595796.5:ENST00000619100.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5:ENST00000416711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	90	2	4.84569	5.694085	6.54248	0.0610722	1.90498e-4	0.158506	0.0043642
chr17	6920680	6920780	6675878	0	+	0.47	(0.45,0.485]	chr17	669364	186	INTRON	INTRON	ALOX12P2	ENSG00000262943.8	ENST00000574183.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	239	2	3.98712	5.693795	7.40047	8.99052e-4	7.89274e-4	0.0178386	0.0120472
chr20	61970688	61970787	7582821	0	-	0.555556	(0.523,0.58]	chr20	792262	165	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000474089.5	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.53665	5.693759999999999	5.85087	0.0132767	0.00291382	0.0787251	0.0298557
chr15	25015220	25015318	6064005	0	+	0.44898	(0.419,0.45]	chr15	595414	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	0	81	2	5.59315	5.69374	5.79433	0.029494	0.00262626	0.116079	0.0278348
chr2	239347581	239347681	1392186	0	-	0.63	(0.58,1]	chr2	148752	231	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	76	2	5.59447	5.69365	5.79283	0.0117666	8.4246e-4	0.0737098	0.0125912
chr11	245545	245639	4783786	0	+	0.489362	(0.485,0.523]	chr11	457659	4	INTRON	INTRON	PSMD13	ENSG00000185627.19	ENST00000529372.5:ENST00000532097.6:ENST00000431206.6:ENST00000534590.5:ENST00000528906.5:ENST00000525665.5:ENST00000527047.5:ENST00000352303.9:ENST00000382671.8:ENST00000526783.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	79	2	5.5129	5.693605	5.87431	0.0229047	0.00127835	0.102982	0.0168904
chr17	2084927	2085026	6832796	0	-	0.515152	(0.485,0.523]	chr17	691062	26	INTRON	INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11:ENST00000573166.5:ENST00000354901.8:ENST00000536871.6:ENST00000575454.1:ENST00000575338.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	79	2	5.5129	5.693605	5.87431	0.0229047	0.00127835	0.102982	0.0168904
chr7	1008149	1008249	3526304	0	-	0.67	(0.58,1]	chr7	340566	72	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	76	2	5.55681	5.693225	5.82964	0.0126042	7.58111e-4	0.0761905	0.0117078
chr2	73402041	73402140	830754	0	+	0.414141	(0.39,0.419]	chr2	93921	155	INTRON	INTRON	ALMS1	ENSG00000116127.20	ENST00000484298.5:ENST00000613296.6:ENST00000614410.4:ENST00000682889.1:ENST00000682675.1:ENST00000684148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	81	2	5.61872	5.6931449999999995	5.76757	0.0204917	0.00361685	0.0979776	0.0342681
chr4	139114548	139114648	2326061	0	-	0.4	(0.39,0.419]	chr4	233690	118	INTRON	INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000379550.5:ENST00000511184.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	81	2	5.61872	5.6931449999999995	5.76757	0.0204917	0.00361685	0.0979776	0.0342681
chr12	113241760	113241860	5333760	0	+	0.45	(0.419,0.45]	chr12	520480	144	INTRON	INTRON	TPCN1	ENSG00000186815.13	ENST00000552642.5:ENST00000547275.5:ENST00000552985.5:ENST00000550873.5:ENST00000551096.5:ENST00000551099.5:ENST00000552897.5:ENST00000550785.5:ENST00000335509.11:ENST00000549279.1:ENST00000552077.5:ENST00000541517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	192	2	4.1811	5.693065	7.20503	0.00212618	0.00199987	0.0289767	0.0230381
chr22	28445472	28445572	7779485	0	-	0.52	(0.485,0.523]	chr22	815741	25	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.35167	5.692815	6.03396	0.0294163	8.35707e-4	0.116079	0.012554
chr19	1997763	1997863	7307771	0	-	0.4	(0.39,0.419]	chr19	753492	3	SS3_PROX	SS3_PROX:INTRON	BTBD2	ENSG00000133243.10	ENST00000255608.9:ENST00000589200.3:ENST00000590646.5:ENST00000587742.5:ENST00000588395.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	222	2	3.99175	5.692635	7.39352	0.01159	3.14999e-5	0.0731024	0.00116717
chr18	795909	796008	7103872	0	-	0.333333	(0.33,0.36]	chr18	723525	76	INTRON	INTRON	YES1	ENSG00000176105.14	ENST00000584307.5:ENST00000314574.5:ENST00000577611.1:ENST00000581960.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	218	2	4.45096	5.69257	6.93418	0.00452716	9.76753e-5	0.0436357	0.00268525
chr16	89436518	89436618	6661199	0	-	0.58	(0.523,0.58]	chr16	666753	48	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	79	2	5.47382	5.692545	5.91127	0.0244797	0.00111349	0.106683	0.0152496
chr4	1326055	1326152	1995299	0	+	0.71134	(0.58,1]	chr4	203264	21	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	77	2	5.35214	5.692425	6.03271	0.0181452	4.18183e-4	0.0921579	0.00770005
chr10	45856393	45856493	4678133	0	-	0.47	(0.45,0.485]	chr10	446183	11	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000610690.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	2	240	2	4.52436	5.692209999999999	6.86006	0.00252685	1.64589e-4	0.031696	0.00393987
chr18	11146026	11146126	7119898	0	-	0.46	(0.45,0.485]	chr18	724490	795	INTRON	INTRON	PIEZO2	ENSG00000154864.14	ENST00000302079.10:ENST00000674853.1:ENST00000383408.7:ENST00000503781.7:ENST00000580640.5:ENST00000582913.5:ENST00000686869.1:ENST00000688929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	91	2	4.83755	5.692115	6.54668	0.06646	2.40818e-4	0.162385	0.00517788
chr10	18562563	18562663	4642354	0	-	0.41	(0.39,0.419]	chr10	443321	102	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.49586	5.69206	5.88826	0.0169925	0.00479873	0.0889149	0.0416285
chr2	239372600	239372700	1392438	0	-	0.52	(0.485,0.523]	chr2	148759	193	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	317	2	3.78324	5.69206	7.60088	4.87357e-4	4.34567e-4	0.0127785	0.007918
chr5	14230240	14230340	2384221	0	+	0.41	(0.39,0.419]	chr5	238473	459	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000502816.1:ENST00000505971.5:ENST00000512070.6:ENST00000509967.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	82	2	5.49586	5.69206	5.88826	0.0169925	0.00479873	0.0889149	0.0416285
chr14	99562737	99562837	6052499	0	-	0.48	(0.45,0.485]	chr14	593891	263	INTRON	INTRON	CCDC85C	ENSG00000205476.9	ENST00000380243.9:ENST00000554996.5:ENST00000554877.1:ENST00000556348.1	protein_coding	protein_coding	protein_coding	protein_coding	1	229	2	4.75578	5.692035	6.62829	0.00247399	1.90839e-4	0.0314221	0.0043642
chr17	642399	642498	6823600	0	-	0.464646	(0.45,0.485]	chr17	689804	92	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000680944.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000681830.1:ENST00000679959.1:ENST00000680114.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000570650.2:ENST00000679680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	80	2	5.60298	5.6919699999999995	5.78096	0.0166968	0.00292492	0.0884836	0.029882
chr5	652787	652887	2378810	0	+	0.63	(0.58,1]	chr5	237647	4	SS3_PROX	SS3_PROX:INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	77	2	5.54978	5.691765	5.83375	0.00751249	0.00165911	0.0576451	0.0202545
chr3	61135580	61135680	1804970	0	-	0.33	(0.29,0.33]	chr3	186836	931	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5:ENST00000490952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	79	2	5.65065	5.691395	5.73214	0.0146933	0.00240038	0.0826843	0.0261006
chrX	41770286	41770386	8032772	0	-	0.44	(0.419,0.45]	chrX	838060	243	INTRON	INTRON	CASK	ENSG00000147044.23	ENST00000378163.7:ENST00000378168.8:ENST00000675354.1:ENST00000644347.1:ENST00000421587.8:ENST00000644219.1:ENST00000645566.1:ENST00000645986.2:ENST00000442742.7:ENST00000378158.6:ENST00000378154.3:ENST00000378166.9:ENST00000646120.2:ENST00000643831.2:ENST00000647118.2:ENST00000642361.2:ENST00000644770.1:ENST00000468986.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	81	2	5.68676	5.6910799999999995	5.6954	0.0254103	0.00338051	0.108573	0.0328791
chr20	32224681	32224780	7454943	0	+	0.515152	(0.485,0.523]	chr20	776030	69	INTRON	INTRON	POFUT1	ENSG00000101346.14	ENST00000375749.8:ENST00000486717.5:ENST00000465791.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	79	2	5.47425	5.69097	5.90769	0.0243396	0.0011708	0.106588	0.0157899
chr1	7499000	7499100	15600	0	+	0.48	(0.45,0.485]	chr1	1895	307	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12	protein_coding	protein_coding	protein_coding	protein_coding	0	93	2	4.95056	5.689885	6.42921	0.0127826	0.00554658	0.0773423	0.0492398
chr4	128858249	128858347	2132070	0	+	0.479592	(0.45,0.485]	chr4	216567	4	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	5.29973	5.689815	6.0799	0.035042	8.68466e-4	0.12704	0.0128564
chr6	163427621	163427719	3069832	0	+	0.469388	(0.45,0.485]	chr6	298551	37	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000537124.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	81	2	5.29973	5.689815	6.0799	0.035042	8.68466e-4	0.12704	0.0128564
chr7	128006238	128006338	3471794	0	+	0.49	(0.485,0.523]	chr7	335434	83	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	172	2	4.7014	5.68969	6.67798	0.00300122	3.32408e-4	0.0348875	0.00652409
chr12	65193665	65193764	5252721	0	+	0.474747	(0.45,0.485]	chr12	512136	219	INTRON	INTRON	LEMD3	ENSG00000174106.3	ENST00000308330.3:ENST00000541171.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	180	2	4.3114	5.68962	7.06784	0.00170784	0.00111665	0.025659	0.0152867
chr3	58283687	58283786	1485219	0	+	0.424242	(0.419,0.45]	chr3	159880	85	INTRON	INTRON	ABHD6	ENSG00000163686.15	ENST00000295962.8:ENST00000478253.6	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	5.09718	5.689615	6.28205	0.012235	0.0102557	0.0757339	0.0684871
chr8	124629064	124629163	4063947	0	-	0.40404	(0.39,0.419]	chr8	387128	97	INTRON	INTRON	MTSS1	ENSG00000170873.19	ENST00000518547.6:ENST00000378017.7:ENST00000325064.9:ENST00000522162.1:ENST00000529463.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	81	2	5.41254	5.6892499999999995	5.96596	0.0347088	0.00156652	0.12648	0.0194594
chr13	113588643	113588743	5658886	0	+	0.51	(0.485,0.523]	chr13	555775	24	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	83	2	5.12092	5.689225	6.25753	0.0414411	4.52177e-4	0.136301	0.00816702
chr1	1063201	1063301	1369	0	+	0.7	(0.58,1]	chr1	310	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000217801	ENSG00000217801.11	ENST00000688131.1:ENST00000456409.6:ENST00000692821.1:ENST00000394517.7:ENST00000427998.6:ENST00000685011.1:ENST00000692266.1:ENST00000412397.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	76	2	5.67642	5.689165	5.70191	0.00964351	0.00117039	0.0659937	0.0157899
chr11	46802514	46802613	5033901	0	-	0.484848	(0.45,0.485]	chr11	487012	3	INTRON	INTRON	CKAP5	ENSG00000175216.15	ENST00000529230.6:ENST00000312055.9:ENST00000354558.7	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	5.47648	5.689075	5.90167	0.0137135	0.0039628	0.0799457	0.0368027
chr3	24431271	24431370	1715839	0	-	0.353535	(0.33,0.36]	chr3	178010	7	INTRON	INTRON	THRB	ENSG00000151090.20	ENST00000646209.2:ENST00000396671.7:ENST00000356447.9:ENST00000646432.1:ENST00000643772.1:ENST00000645139.1:ENST00000642307.1:ENST00000644321.1:ENST00000646966.1:ENST00000416420.5:ENST00000413780.5:ENST00000447875.5:ENST00000453729.6:ENST00000431815.5:ENST00000447414.5:ENST00000428492.5:ENST00000418247.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	81	2	5.50696	5.68859	5.87022	0.0148989	0.00418696	0.0834354	0.0379935
chr9	134366680	134366780	4261090	0	+	0.56	(0.523,0.58]	chr9	406311	397	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	79	2	5.61976	5.68859	5.75742	0.0155135	0.00236826	0.0849828	0.0259199
chr19	6239788	6239888	7321410	0	-	0.43	(0.419,0.45]	chr19	756093	87	INTRON	INTRON	MLLT1	ENSG00000130382.9	ENST00000252674.9	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	5.64904	5.68849	5.72794	0.0242188	0.00368884	0.106588	0.0348088
chr3	65809821	65809921	1813573	0	-	0.48	(0.45,0.485]	chr3	187296	893	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	175	2	4.70699	5.688090000000001	6.66919	0.0035963	3.68733e-4	0.0384878	0.00704866
chr13	113053801	113053901	5656174	0	+	0.53	(0.523,0.58]	chr13	555186	1	SS3_PROX	SS3_PROX:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	82	2	5.35452	5.687945	6.02137	0.00992924	0.00453096	0.0671959	0.0400651
chr11	67250708	67250798	4879766	0	+	0.522222	(0.485,0.523]	chr11	469915	8	CDS	CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000308783.9:ENST00000526258.5:ENST00000531696.5:ENST00000530342.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	84	2	5.25048	5.687844999999999	6.12521	0.00823189	0.0059614	0.0608959	0.0479866
chr14	104777433	104777528	6057663	0	-	0.568421	(0.523,0.58]	chr14	594698	8	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000557552.1:ENST00000683722.1:ENST00000555528.5:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000544168.5:ENST00000554848.5:ENST00000682269.1:ENST00000555380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	172	2	4.82222	5.687754999999999	6.55329	0.00382069	2.24831e-4	0.0398603	0.00491787
chr5	1327714	1327812	2609092	0	-	0.55102	(0.523,0.58]	chr5	259719	14	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	280	2	4.26064	5.68752	7.1144	0.00130498	1.51454e-4	0.0220198	0.00370696
chr4	38915872	38915972	2031423	0	+	0.58	(0.523,0.58]	chr4	207358	4	INTRON	INTRON	FAM114A1	ENSG00000197712.12	ENST00000515037.5:ENST00000358869.5:ENST00000512889.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	85	2	5.20104	5.687435	6.17383	0.00760615	0.00648051	0.0579698	0.0503748
chr5	81108795	81108895	2469739	0	+	0.42	(0.419,0.45]	chr5	246625	4	SS3_PROX	SS3_PROX:INTRON	RASGRF2	ENSG00000113319.13	ENST00000265080.9:ENST00000503795.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	224	2	4.06005	5.687255	7.31446	0.011193	4.69009e-5	0.0717814	0.00157191
chr10	79222372	79222472	4533585	0	+	0.58	(0.523,0.58]	chr10	432457	57	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.49322	5.6869700000000005	5.88072	0.0126258	0.00324246	0.0761905	0.0319521
chrX	133804028	133804127	8114207	0	-	0.363636	(0.36,0.39]	chrX	845523	495	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	371	2	3.56224	5.686815	7.81139	8.72819e-4	5.50261e-4	0.0136794	0.0129083
chr6	16367467	16367567	3100507	0	-	0.43	(0.419,0.45]	chr6	300842	386	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.18804	5.686719999999999	6.1854	0.051668	0.00100635	0.148503	0.0142602
chr2	233542167	233542267	1385689	0	-	0.33	(0.29,0.33]	chr2	148145	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	USP40	ENSG00000085982.15	ENST00000450966.5:ENST00000251722.10:ENST00000678225.2:ENST00000427112.6:ENST00000485943.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	80	2	5.48431	5.68616	5.88801	0.0112593	0.00360762	0.0720977	0.0342681
chr9	2017359	2017411	4105272	0	+	0.634615	(0.58,1]	chr9	390910	2	SS5_PROX	SS5_PROX:INTRON	SMARCA2	ENSG00000080503.24	ENST00000637383.1:ENST00000357248.8:ENST00000450198.6:ENST00000634287.1:ENST00000637103.1:ENST00000349721.8:ENST00000636559.1:ENST00000634536.1:ENST00000636903.1:ENST00000637352.1:ENST00000637097.1:ENST00000457226.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	76	2	5.43752	5.68613	5.93474	0.0156166	5.58693e-4	0.0849828	0.00944382
chr1	42819204	42819303	105522	0	+	0.494949	(0.485,0.523]	chr1	12744	10	INTRON	INTRON	ERMAP	ENSG00000164010.15	ENST00000372517.8:ENST00000643061.1:ENST00000645239.1:ENST00000647120.1:ENST00000487556.6:ENST00000642150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	80	2	5.30837	5.6861250000000005	6.06388	0.0314138	7.70737e-4	0.12069	0.0118331
chr6	1681325	1681425	3079683	0	-	0.41	(0.39,0.419]	chr6	299464	10	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000533279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	191	2	5.10412	5.685975	6.26783	0.00920367	1.51367e-4	0.0644228	0.00370696
chr13	98278498	98278598	5635016	0	+	0.48	(0.45,0.485]	chr13	553480	333	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	3	645	2	5.24636	5.68586	6.12536	1.58822e-4	1.76617e-5	0.00705817	7.69248e-4
chr2	241669846	241669941	1078230	0	+	0.463158	(0.45,0.485]	chr2	117195	8	INTRON	INTRON	ATG4B	ENSG00000168397.17	ENST00000405546.7:ENST00000402096.5:ENST00000494465.5:ENST00000404914.8:ENST00000482507.5:ENST00000344376.9:ENST00000428861.1:ENST00000460211.5:ENST00000475693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	82	2	5.38553	5.68577	5.98601	0.0119228	0.00490471	0.0741726	0.0422077
chr11	70796842	70796942	5062250	0	-	0.44	(0.419,0.45]	chr11	492701	790	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	84	2	5.35317	5.685755	6.01834	0.015582500000000001	0.00714797	0.0849828	0.0541241
chr4	1326541	1326639	1995304	0	+	0.632653	(0.58,1]	chr4	203264	26	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	76	2	5.63543	5.685725	5.73602	0.00904546	0.00131165	0.0637469	0.0171898
chr2	240533733	240533833	1394780	0	-	0.29	[0,0.29]	chr2	149044	12	INTRON	INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000405523.7:ENST00000405002.5:ENST00000484526.5:ENST00000459901.5:ENST00000496300.5:ENST00000441168.5:ENST00000443318.1:ENST00000462004.5:ENST00000418708.3:ENST00000418505.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	77	2	5.51146	5.68566	5.85986	0.0147753	0.00106877	0.0829204	0.0148869
chr17	16203004	16203104	6863726	0	-	0.49	(0.485,0.523]	chr17	695548	39	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000411510.5:ENST00000582357.5:ENST00000436828.5:ENST00000460276.5:ENST00000585296.1:ENST00000430577.2:ENST00000466825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	173	2	4.47284	5.685594999999999	6.89835	0.00197036	6.43746e-4	0.0278418	0.0104271
chr10	132755972	132756072	4619032	0	+	0.61	(0.58,1]	chr10	441201	21	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	1	160	2	4.92926	5.685425	6.44159	0.00221069	9.54931e-5	0.0295736	0.00263691
chr7	567561	567661	3523760	0	-	0.49	(0.485,0.523]	chr7	340370	157	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000400758.6	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.48966	5.685404999999999	5.88115	0.012541	0.0033837199999999998	0.0761905	0.0328791
chr9	15268448	15268547	4281927	0	-	0.515152	(0.485,0.523]	chr9	409166	1	INTRON	INTRON	TTC39B	ENSG00000155158.20	ENST00000512701.7:ENST00000297615.10:ENST00000380850.9:ENST00000505732.5:ENST00000506891.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	174	2	4.91277	5.68535	6.45793	0.00452302	1.7739e-4	0.0436138	0.00415451
chr18	58084641	58084741	7071850	0	+	0.49	(0.485,0.523]	chr18	721100	228	INTRON	INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5:ENST00000588516.5:ENST00000456986.5:ENST00000675502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	213	2	4.54224	5.68487	6.8275	0.00332934	8.64447e-5	0.0368376	0.00245611
chr10	28678373	28678473	4470347	0	+	0.43	(0.419,0.45]	chr10	427719	4	SS5_PROX	SS5_PROX:INTRON	BAMBI	ENSG00000095739.11	ENST00000497699.1:ENST00000375533.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	82	2	5.32195	5.684595	6.04724	0.0431627	0.00142238	0.138403	0.0181715
chr9	33150192	33150292	4293415	0	-	0.38	(0.36,0.39]	chr9	410135	144	INTRON	INTRON	B4GALT1	ENSG00000086062.13	ENST00000535206.5:ENST00000379731.5	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	5.53855	5.684545	5.83054	0.0182399	0.00432809	0.0921579	0.0389438
chr10	100549233	100549333	4569158	0	+	0.58	(0.523,0.58]	chr10	436105	12	UTR3	UTR3:EXON_MRNA	HIF1AN	ENSG00000166135.14	ENST00000299163.7	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.39327	5.684535	5.9758	0.0277354	9.36996e-4	0.112851	0.0135546
chr4	39923645	39923744	2218613	0	-	0.40404	(0.39,0.419]	chr4	224220	5	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5:ENST00000513798.1	protein_coding	protein_coding	protein_coding	protein_coding	1	186	2	4.25158	5.6844850000000005	7.11739	0.00208713	0.00156775	0.0287557	0.0194695
chr12	53183990	53184090	5235160	0	+	0.47	(0.45,0.485]	chr12	508650	14	INTRON	INTRON	ZNF740	ENSG00000139651.11	ENST00000552593.1:ENST00000416904.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	79	2	5.54186	5.68438	5.8269	0.0243502	0.00167585	0.106588	0.0203806
chr15	64519353	64519453	6131528	0	+	0.47	(0.45,0.485]	chr15	603266	164	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	79	2	5.54186	5.68438	5.8269	0.0243502	0.00167585	0.106588	0.0203806
chr3	146103778	146103878	1936419	0	-	0.45	(0.419,0.45]	chr3	196999	1	SS5_PROX	SS5_PROX:INTRON	PLOD2	ENSG00000152952.12	ENST00000282903.10:ENST00000360060.7:ENST00000494950.5:ENST00000469350.5	protein_coding	protein_coding	protein_coding	protein_coding	0	93	2	4.98054	5.68409	6.38764	0.0154548	0.00863623	0.0869771	0.0623824
chr21	43604471	43604571	7677115	0	-	0.52	(0.485,0.523]	chr21	802562	118	INTRON	INTRON	HSF2BP	ENSG00000160207.9	ENST00000291560.7	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	4.96239	5.68372	6.40505	0.0518747	2.98099e-4	0.148503	0.00604717
chr10	87335114	87335214	4724509	0	-	0.3	(0.29,0.33]	chr10	450936	3	SS3_PROX	SS3_PROX:INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6:ENST00000433530.7:ENST00000688257.1:ENST00000433920.5:ENST00000687925.1:ENST00000666515.2:ENST00000688926.1:ENST00000447424.6:ENST00000690598.1:ENST00000663113.1:ENST00000667520.2:ENST00000693252.1:ENST00000687827.1:ENST00000687141.1:ENST00000654503.2:ENST00000655272.2:ENST00000668676.1:ENST00000653080.1:ENST00000690287.1:ENST00000413722.6:ENST00000653238.1:ENST00000660454.1:ENST00000688790.1:ENST00000660726.2:ENST00000417860.7:ENST00000686862.1:ENST00000413961.5:ENST00000686013.1:ENST00000458739.1:ENST00000667985.2:ENST00000691822.1:ENST00000664997.1:ENST00000662586.1:ENST00000656123.1:ENST00000366446.5	lncRNA	lncRNA	lncRNA	lncRNA	0	79	2	5.40051	5.6836649999999995	5.96682	0.0252356	0.00106564	0.108065	0.0148659
chr16	89305544	89305644	6659867	0	-	0.6	(0.58,1]	chr16	666664	2	SS3_PROX	SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1:ENST00000647539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	190	2	4.08431	5.68357	7.28283	0.00525202	7.19115e-6	0.0476984	4.08425e-4
chr12	26768958	26769058	5400959	0	-	0.45	(0.419,0.45]	chr12	528735	428	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000545235.1:ENST00000242737.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	680	2	5.45137	5.683104999999999	5.91484	3.9131e-4	1.55881e-5	0.0113511	7.04149e-4
chr19	45831240	45831311	7389797	0	-	0.507042	(0.485,0.523]	chr19	767562	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SYMPK	ENSG00000125755.19	ENST00000245934.12:ENST00000593504.5:ENST00000600237.5:ENST00000599460.5:ENST00000599814.5:ENST00000598896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	79	2	5.39369	5.68295	5.97221	0.0275819	9.86421e-4	0.112782	0.0140716
chr2	235893444	235893544	1066548	0	+	0.59	(0.58,1]	chr2	115730	96	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	78	2	5.41094	5.68274	5.95454	0.0059453	0.00240622	0.0506158	0.0261006
chr9	129610174	129610274	4250932	0	+	0.73	(0.58,1]	chr9	404743	6	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.41094	5.68274	5.95454	0.0059453	0.00240622	0.0506158	0.0261006
chr12	132537049	132537148	5352986	0	+	0.656566	(0.58,1]	chr12	523670	87	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	160	2	4.51264	5.6825600000000005	6.85248	9.12934e-4	3.64278e-4	0.0180377	0.00699922
chr2	10345847	10345947	718857	0	+	0.47	(0.45,0.485]	chr2	84026	153	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	79	2	5.68155	5.682425	5.6833	0.0195193	0.00241241	0.0955413	0.0261086
chr10	92859812	92859912	4551298	0	+	0.48	(0.45,0.485]	chr10	434413	108	INTRON	INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1:ENST00000371552.8:ENST00000443748.6:ENST00000371543.5:ENST00000260762.10	protein_coding	protein_coding	protein_coding	protein_coding	1	214	2	4.41739	5.682345	6.9473	0.00469188	7.52721e-5	0.0447158	0.00222212
chr7	72602787	72602886	3598598	0	-	0.444444	(0.419,0.45]	chr7	347138	267	INTRON	INTRON	TYW1B	ENSG00000277149.5	ENST00000612372.4:ENST00000620995.5	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	5.39934	5.6820450000000005	5.96475	0.0169309	0.00646489	0.088829	0.0503748
chr6	166955421	166955483	3302048	0	-	0.532258	(0.523,0.58]	chr6	319753	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000358165.7:ENST00000683158.1:ENST00000683333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	1080	2	5.1026	5.681865	6.26113	4.27166e-4	1.5507e-4	0.00779962	0.00693487
chr17	38741828	38741927	6895593	0	-	0.585859	(0.58,1]	chr17	700401	10	INTRON	INTRON	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000611883.4:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.39546	5.6818	5.96814	0.0168207	5.06433e-4	0.0884836	0.00881473
chr20	13168905	13169004	7440336	0	+	0.494949	(0.485,0.523]	chr20	774209	42	UTR3	UTR3:EXON_MRNA	SPTLC3	ENSG00000172296.13	ENST00000399002.7	protein_coding	protein_coding	protein_coding	protein_coding	1	171	2	4.66851	5.681695	6.69488	0.00290687	3.66019e-4	0.0342042	0.00700609
chr8	125052538	125052636	4065247	0	-	0.367347	(0.36,0.39]	chr8	387221	15	INTRON	INTRON	WASHC5	ENSG00000164961.16	ENST00000318410.12:ENST00000517845.5	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.49224	5.68154	5.87084	0.0304242	0.00196738	0.11845	0.022768300000000002
chr1	1063379	1063479	1371	0	+	0.68	(0.58,1]	chr1	312	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000217801	ENSG00000217801.11	ENST00000688131.1:ENST00000456409.6:ENST00000692821.1:ENST00000394517.7:ENST00000427998.6:ENST00000685011.1:ENST00000692266.1:ENST00000412397.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	188	2	4.30968	5.681395	7.05311	0.00327429	1.5843e-5	0.0366935	7.12006e-4
chr16	85587931	85588031	6518952	0	+	0.6	(0.58,1]	chr16	646396	312	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.59324	5.68129	5.76934	0.00849371	0.0014734	0.0617717	0.0185589
chr13	28139786	28139886	5555514	0	+	0.47	(0.45,0.485]	chr13	548208	3	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	80	2	5.51989	5.681235	5.84258	0.0151085	0.00357389	0.0841543	0.0342681
chr10	38055260	38055360	4478509	0	+	0.47	(0.45,0.485]	chr10	428212	8	CDS	CDS:EXON_MRNA:INTRON	ZNF33A	ENSG00000189180.16	ENST00000307441.13:ENST00000374618.7:ENST00000628825.2:ENST00000458705.6:ENST00000432900.7:ENST00000469037.2	protein_coding	protein_coding	protein_coding	protein_coding	1	174	2	4.62613	5.680895	6.73566	0.00318291	4.64649e-4	0.0360488	0.00826915
chr14	89335356	89335456	6027456	0	-	0.44	(0.419,0.45]	chr14	591456	17	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	81	2	5.57051	5.680695	5.79088	0.022052	0.00441471	0.101502	0.0393688
chr7	105376450	105376550	3667863	0	-	0.36	(0.33,0.36]	chr7	353743	695	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	80	2	5.38284	5.679985	5.97713	0.0317908	0.00133012	0.121384	0.0173248
chr12	2960453	2960553	5157688	0	+	0.56	(0.523,0.58]	chr12	501257	1	SS5_PROX	SS5_PROX:INTRON	TEAD4	ENSG00000197905.10	ENST00000358409.7:ENST00000359864.8:ENST00000540314.2:ENST00000536826.2:ENST00000543035.6:ENST00000397122.6:ENST00000443986.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	78	2	5.5868	5.679835000000001	5.77287	0.020474	0.00160162	0.0979776	0.0197827
chr20	57566093	57566190	7496932	0	+	0.350515	(0.33,0.36]	chr20	781830	4	UTR3	UTR3:EXON_MRNA	PCK1	ENSG00000124253.11	ENST00000467047.1:ENST00000319441.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	1496	2	5.54558	5.6797450000000005	5.81391	0.00200357	7.91815e-5	0.0230381	0.00494878
chr11	102186785	102186885	4930514	0	+	0.35	(0.33,0.36]	chr11	475106	2	INTRON	INTRON	YAP1	ENSG00000137693.14	ENST00000282441.10:ENST00000537274.5:ENST00000345877.6:ENST00000615667.4:ENST00000526343.5:ENST00000531439.5:ENST00000629586.2:ENST00000524575.5:ENST00000529029.1	protein_coding	protein_coding	protein_coding	protein_coding	1	184	2	5.03642	5.679665	6.32291	0.00694591	1.62095e-4	0.0553908	0.00388958
chr17	80560376	80560476	6809056	0	+	0.54	(0.523,0.58]	chr17	687806	142	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	78	2	5.55012	5.679425	5.80873	0.0217068	0.00145893	0.100615	0.0184991
chr18	77018877	77018977	7180503	0	-	0.44	(0.419,0.45]	chr18	730157	12	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000580402.5:ENST00000580473.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000495162.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	97	2	4.85365	5.67929	6.50493	0.0197641	0.00711588	0.100774	0.0560048
chr8	503988	504088	3931444	0	-	0.56	(0.523,0.58]	chr8	375980	90	INTRON	INTRON	TDRP	ENSG00000180190.13	ENST00000523656.5:ENST00000324079.11	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.44845	5.67921	5.90997	0.012016	0.00361636	0.0743424	0.0342681
chr13	113497277	113497371	5658243	0	+	0.553191	(0.523,0.58]	chr13	555678	9	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000473287.1	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.35124	5.679125	6.00701	0.0295772	8.61362e-4	0.116079	0.0127848
chr20	10644256	10644356	7525099	0	-	0.48	(0.45,0.485]	chr20	785477	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	JAG1	ENSG00000101384.12	ENST00000254958.10:ENST00000423891.6:ENST00000617965.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	174	2	4.55802	5.67861	6.7992	0.00282996	5.63543e-4	0.033746	0.00950156
chr11	70762868	70762968	5061910	0	-	0.55	(0.523,0.58]	chr11	492701	450	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	79	2	5.53665	5.67852	5.82039	0.0139724	0.00291382	0.0805959	0.0298557
chr22	25487126	25487225	7701415	0	+	0.494949	(0.485,0.523]	chr22	805972	256	INTRON	INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000686640.1:ENST00000509460.3:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	93	2	4.8987	5.678315	6.45793	0.0129327	0.00452302	0.0778105	0.0436138
chr15	65511695	65511794	6304468	0	-	0.30303	(0.29,0.33]	chr15	621515	40	INTRON	INTRON	DPP8	ENSG00000074603.19	ENST00000341861.9:ENST00000300141.11:ENST00000358939.8:ENST00000321147.10:ENST00000559233.5:ENST00000395652.7:ENST00000559526.5:ENST00000558529.1:ENST00000560436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	79	2	5.35847	5.67825	5.99803	0.0269557	9.81074e-4	0.112113	0.0140347
chr9	83490822	83490922	4325459	0	-	0.37	(0.36,0.39]	chr9	413150	232	INTRON	INTRON	FRMD3	ENSG00000172159.16	ENST00000376438.5:ENST00000304195.8	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.61929	5.6782	5.73711	0.0210765	0.00359045	0.0996078	0.0342681
chr7	98116272	98116372	3423497	0	+	0.41	(0.39,0.419]	chr7	330518	86	INTRON	INTRON	LMTK2	ENSG00000164715.6	ENST00000297293.6	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	5.32971	5.6780550000000005	6.0264	0.0390381	0.00134695	0.131575	0.0174765
chr9	95059402	95059501	4190597	0	+	0.545455	(0.523,0.58]	chr9	398160	25	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000297979.9:ENST00000424143.5:ENST00000462125.5:ENST00000479161.5:ENST00000460573.5:ENST00000478603.5:ENST00000471978.5:ENST00000445181.5:ENST00000478473.1:ENST00000463372.5:ENST00000489562.5:ENST00000468164.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	78	2	5.65749	5.6779150000000005	5.69834	0.0182707	0.00194036	0.0921579	0.0225083
chr4	869369	869467	2178286	0	-	0.489796	(0.485,0.523]	chr4	220580	8	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	78	2	5.55054	5.677845	5.80515	0.0215787	0.00153111	0.100612	0.0191213
chr20	61970588	61970688	7582820	0	-	0.51	(0.485,0.523]	chr20	792262	164	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000474089.5	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.623	5.677755	5.73251	0.0192139	0.00184599	0.095424900000000007	0.0217471
chr14	39314799	39314882	5792670	0	+	0.26506	[0,0.29]	chr14	567578	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MIA2	ENSG00000150527.18	ENST00000553728.1:ENST00000640607.2:ENST00000341749.7:ENST00000557038.5:ENST00000396165.8:ENST00000396158.6:ENST00000280083.7:ENST00000341502.9:ENST00000556148.5:ENST00000348007.7:ENST00000553352.1:ENST00000556593.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	80	2	5.1579	5.67769	6.19748	0.0269673	4.16673e-4	0.112113	0.00769503
chrX	123638693	123638763	8098452	0	-	0.457143	(0.45,0.485]	chrX	844484	2	SS5_PROX	SS5_PROX:INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	1	174	2	4.73811	5.6776800000000005	6.61725	0.00395394	3.37138e-4	0.0406092	0.00660842
chr10	18564162	18564262	4642370	0	-	0.38	(0.36,0.39]	chr10	443321	118	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	182	2	4.35204	5.677585	7.00313	0.00249381	0.00120025	0.0315747	0.016121
chr20	21321197	21321297	7449163	0	+	0.51	(0.485,0.523]	chr20	775020	174	INTRON	INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	1	171	2	4.5471	5.677545	6.80799	0.0023441	5.20483e-4	0.0305023	0.00899129
chr9	95059501	95059600	4190598	0	+	0.535354	(0.523,0.58]	chr9	398160	26	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000297979.9:ENST00000424143.5:ENST00000462125.5:ENST00000479161.5:ENST00000460573.5:ENST00000478603.5:ENST00000471978.5:ENST00000445181.5:ENST00000478473.1:ENST00000463372.5:ENST00000489562.5:ENST00000468164.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	274	2	3.87621	5.67753	7.47885	6.30946e-4	4.88092e-4	0.0147478	0.00860249
chr2	160465726	160465826	1293208	0	-	0.44	(0.419,0.45]	chr2	138809	329	INTRON	INTRON	RBMS1	ENSG00000153250.21	ENST00000348849.8:ENST00000474820.5:ENST00000491781.5:ENST00000477486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	246	2	4.00667	5.6773050000000005	7.34794	0.00164606	9.81361e-4	0.0250898	0.0140376
chr17	6692843	6692943	6845998	0	-	0.48	(0.45,0.485]	chr17	693297	4	SS5_PROX	SS5_PROX:INTRON	SLC13A5	ENSG00000141485.17	ENST00000433363.7:ENST00000293800.10:ENST00000381074.8:ENST00000573648.5:ENST00000572727.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	94	2	4.88567	5.67725	6.46883	0.0146126	0.00516809	0.0837727	0.0472296
chr1	3471511	3471606	5824	0	+	0.705263	(0.58,1]	chr1	1229	16	INTRON	INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5	protein_coding	protein_coding	protein_coding	protein_coding	1	170	2	4.15724	5.676925	7.19661	0.00107173	4.22825e-4	0.0148869	0.011772
chr16	29269614	29269714	6433533	0	+	0.55	(0.523,0.58]	chr16	636745	175	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	83	2	5.25403	5.67682	6.09961	0.00866655	0.00573579	0.0623824	0.0467736
chr10	7722853	7722950	4442145	0	+	0.618557	(0.58,1]	chr10	425524	7	INTRON	INTRON	ITIH2	ENSG00000151655.19	ENST00000358415.9:ENST00000379587.4	protein_coding	protein_coding	protein_coding	protein_coding	3	275	2	4.66548	5.676735	6.68799	0.00130716	2.15166e-5	0.0220198	8.8591e-4
chr20	62921858	62921958	7585553	0	-	0.23	[0,0.29]	chr20	792927	71	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.32115	5.67668	6.03221	0.00561175	0.00426525	0.0493906	0.0384752
chr3	13025094	13025194	1689387	0	-	0.59	(0.58,1]	chr3	176542	26	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	1	158	2	4.61399	5.67666	6.73933	0.00116939	2.64819e-4	0.0206836	0.00556151
chr1	35715143	35715241	445616	0	-	0.510204	(0.485,0.523]	chr1	53053	14	UTR3	UTR3:EXON_MRNA	C1orf216	ENSG00000142686.8	ENST00000270815.5	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.5129	5.67652	5.84014	0.0229047	0.00139792	0.102982	0.0179863
chr12	43875222	43875322	5207322	0	+	0.51	(0.485,0.523]	chr12	506266	299	INTRON	INTRON	TMEM117	ENSG00000139173.10	ENST00000266534.8:ENST00000551577.5:ENST00000546868.5:ENST00000550495.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	78	2	5.5129	5.67652	5.84014	0.0229047	0.00139792	0.102982	0.0179863
chr5	861152	861252	2607966	0	-	0.59	(0.58,1]	chr5	259417	102	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	0	76	2	5.35214	5.676465	6.00079	0.0181452	4.59827e-4	0.0921579	0.00821903
chr9	40106257	40106357	4309077	0	-	0.64	(0.58,1]	chr9	411931	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000284116	ENSG00000284116.1	ENST00000639363.1	lncRNA	lncRNA	lncRNA	lncRNA	0	76	2	5.35214	5.676465	6.00079	0.0181452	4.59827e-4	0.0921579	0.00821903
chr18	6195887	6195986	7111676	0	-	0.515152	(0.485,0.523]	chr18	723858	236	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000400105.6:ENST00000317931.12:ENST00000400104.7	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.65791	5.67634	5.69477	0.0181582	0.00203227	0.0921579	0.0232814
chr12	11127567	11127667	5372183	0	-	0.34	(0.33,0.36]	chr12	526873	60	INTRON	INTRON	ENSG00000275778:PRH1:TAS2R14	ENSG00000275778.2:ENSG00000231887.8:ENSG00000212127.6	ENST00000536668.2:ENST00000535024.6:ENST00000541977.5:ENST00000381852.4:ENST00000546265.1:ENST00000541175.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	177	2	4.47998	5.6763200000000005	6.87266	0.00258098	7.80889e-4	0.0321738	0.011942
chr16	18497625	18497725	6558844	0	-	0.51	(0.485,0.523]	chr16	653635	625	INTRON	INTRON	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000381474.7:ENST00000564991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	82	2	5.12092	5.676159999999999	6.2314	0.0414411	4.86354e-4	0.136301	0.00857996
chr17	49624270	49624369	6925234	0	-	0.545455	(0.523,0.58]	chr17	705476	10	INTRON	INTRON	SPOP	ENSG00000121067.19	ENST00000393328.6:ENST00000504102.6:ENST00000347630.6:ENST00000665825.1:ENST00000514121.6:ENST00000659760.1:ENST00000509079.6:ENST00000671445.1:ENST00000513080.6:ENST00000503676.5:ENST00000505581.5:ENST00000506399.5:ENST00000507970.5:ENST00000515508.6:ENST00000504212.5:ENST00000510476.5:ENST00000508805.5:ENST00000451526.6:ENST00000502385.1:ENST00000509765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	78	2	5.47382	5.67586	5.8779	0.0244797	0.00121652	0.106683	0.0162693
chr21	43604372	43604471	7677114	0	-	0.545455	(0.523,0.58]	chr21	802562	117	INTRON	INTRON	HSF2BP	ENSG00000160207.9	ENST00000291560.7	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.47382	5.67586	5.8779	0.0244797	0.00121652	0.106683	0.0162693
chr7	47377314	47377414	3587565	0	-	0.55	(0.523,0.58]	chr7	346036	73	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	78	2	5.47382	5.67586	5.8779	0.0244797	0.00121652	0.106683	0.0162693
chr10	79114618	79114718	4532501	0	+	0.61	(0.58,1]	chr10	432420	450	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	231	2	3.66931	5.67514	7.68097	0.00122119	1.38011e-4	0.0163226	0.00651662
chr16	85230365	85230465	6515372	0	+	0.47	(0.45,0.485]	chr16	646377	26	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	85	2	5.18438	5.674945	6.16551	0.00879664	0.00773818	0.0630845	0.0568726
chr15	64863430	64863526	6133428	0	+	0.635417	(0.58,1]	chr15	603347	15	INTRON	INTRON	PLEKHO2	ENSG00000241839.10	ENST00000616065.4:ENST00000323544.5	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.25731	5.674935	6.09256	0.00452436	0.00358178	0.0436138	0.0342681
chr9	134337737	134337837	4260800	0	+	0.62	(0.58,1]	chr9	406311	107	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	80	2	5.25731	5.674935	6.09256	0.00452436	0.00358178	0.0436138	0.0342681
chr21	44859762	44859862	7678432	0	-	0.41	(0.39,0.419]	chr21	802754	30	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000397886.3:ENST00000474737.5:ENST00000494690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	217	2	3.68433	5.674915	7.6655	0.00637588	7.53311e-4	0.0501889	0.0162173
chr19	46979191	46979291	7275365	0	+	0.6	(0.58,1]	chr19	747275	414	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	75	2	5.55681	5.67482	5.79283	0.0126042	8.4246e-4	0.0761905	0.0125912
chrX	1424130	1424229	7965724	0	-	0.585859	(0.58,1]	chrX	834272	19	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.55681	5.67482	5.79283	0.0126042	8.4246e-4	0.0761905	0.0125912
chr6	32974765	32974865	2897718	0	+	0.58	(0.523,0.58]	chr6	283728	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRD2	ENSG00000204256.14	ENST00000374825.9:ENST00000469132.2:ENST00000679179.1:ENST00000678778.1:ENST00000449085.4:ENST00000677331.1:ENST00000456339.5:ENST00000678250.1:ENST00000677085.1:ENST00000374831.8:ENST00000495733.5:ENST00000482914.5:ENST00000679099.1:ENST00000464592.6:ENST00000607833.5:ENST00000395287.5:ENST00000449025.5:ENST00000463639.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	259	2	3.48688	5.67456	7.86224	0.00280274	2.88079e-4	0.0289791	0.00964028
chr20	10426934	10427033	7524949	0	-	0.353535	(0.33,0.36]	chr20	785433	58	INTRON	INTRON	MKKS	ENSG00000125863.20:ENSG00000285508.1	ENST00000347364.7:ENST00000651692.1:ENST00000652676.1:ENST00000399054.6:ENST00000609375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	176	2	4.64843	5.674505	6.70058	0.00354175	4.90394e-4	0.0382067	0.00862316
chr6	147745152	147745252	3029620	0	+	0.34	(0.33,0.36]	chr6	295875	77	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	0	80	2	5.34082	5.674245	6.00767	0.0338211	0.00123038	0.124319	0.0164259
chr3	120078775	120078874	1886968	0	-	0.585859	(0.58,1]	chr3	191436	41	INTRON	INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000650344.2:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000677128.1:ENST00000677530.1:ENST00000677034.1:ENST00000679131.1:ENST00000676743.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	75	2	5.51813	5.673885	5.82964	0.013519	7.58111e-4	0.0792526	0.0117078
chr11	18012001	18012101	5015379	0	-	0.47	(0.45,0.485]	chr11	484705	1	SS5_PROX	SS5_PROX:INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528200.5:ENST00000532265.5:ENST00000529728.5:ENST00000530613.5:ENST00000532389.5:ENST00000530925.5:ENST00000533328.5:ENST00000532212.5:ENST00000524716.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	174	2	4.48652	5.67329	6.86006	0.00252685	6.88779e-4	0.031696	0.0109212
chr20	35343309	35343409	7552867	0	-	0.47	(0.45,0.485]	chr20	788509	280	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000497717.5:ENST00000443429.5:ENST00000438533.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	173	2	4.62613	5.67273	6.71933	0.00328012	4.64649e-4	0.0367219	0.00826915
chr17	17717030	17717130	6689205	0	+	0.56	(0.523,0.58]	chr17	671338	321	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.43411	5.67269	5.91127	0.026041	0.00111349	0.109673	0.0152496
chr6	170398071	170398171	3076560	0	+	0.56	(0.523,0.58]	chr6	299192	21	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.43411	5.67269	5.91127	0.026041	0.00111349	0.109673	0.0152496
chr22	36010645	36010745	7805648	0	-	0.36	(0.33,0.36]	chr22	817798	491	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.46338	5.6724049999999995	5.88143	0.0281891	0.00169367	0.114124	0.0204799
chr7	76998119	76998218	3398781	0	+	0.585859	(0.58,1]	chr7	328286	74	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	78	2	5.36153	5.672375000000001	5.98322	0.00562007	0.00273899	0.0493906	0.028553
chr22	50236515	50236615	7827226	0	-	0.54	(0.523,0.58]	chr22	821200	26	INTRON	INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	78	2	5.61976	5.672315	5.72487	0.0163679	0.00236826	0.0875379	0.0259199
chrX	123864423	123864522	7946324	0	+	0.363636	(0.36,0.39]	chrX	831426	35	INTRON	INTRON	XIAP	ENSG00000101966.13	ENST00000422098.5:ENST00000481776.5:ENST00000434753.7:ENST00000497906.5:ENST00000468691.5:ENST00000430625.1:ENST00000371199.8:ENST00000497640.1:ENST00000355640.3:ENST00000468503.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	219	2	4.37395	5.672185	6.97042	0.00586794	1.0585e-4	0.0506158	0.00286061
chr17	72376470	72376570	6962046	0	-	0.54	(0.523,0.58]	chr17	710285	172	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000648907.1:ENST00000650482.1	lncRNA	lncRNA	lncRNA	lncRNA	1	206	2	4.30264	5.67216	7.04168	0.00528859	4.24161e-5	0.047841	0.00145737
chr20	32475934	32476033	7543627	0	-	0.575758	(0.523,0.58]	chr20	787372	8	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	79	2	5.49322	5.672045	5.85087	0.0132767	0.00324246	0.0787251	0.0319521
chr2	238370172	238370272	1073633	0	+	0.39	(0.36,0.39]	chr2	116402	137	INTRON	INTRON	TRAF3IP1	ENSG00000204104.12	ENST00000391993.7:ENST00000373327.5:ENST00000462122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	81	2	5.28778	5.67202	6.05626	0.0407706	0.00124043	0.135868	0.0165207
chr15	22557891	22557991	6059853	0	+	0.38	(0.36,0.39]	chr15	594971	4	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	83	2	5.14958	5.672005	6.19443	0.0493212	8.7159e-4	0.146207	0.0128912
chr14	89181500	89181597	6025906	0	-	0.587629	(0.58,1]	chr14	591409	3	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000556541.1:ENST00000555010.1:ENST00000557496.1:ENST00000557718.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	75	2	5.47839	5.67196	5.86553	0.0145198	6.8352e-4	0.0823104	0.0108717
chr22	26451860	26451958	7772688	0	-	0.612245	(0.58,1]	chr22	815279	11	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HPS4	ENSG00000100099.21	ENST00000519774.5:ENST00000493455.6:ENST00000398145.7:ENST00000491142.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	75	2	5.47839	5.67196	5.86553	0.0145198	6.8352e-4	0.0823104	0.0108717
chr17	80224036	80224136	6806859	0	+	0.61	(0.58,1]	chr17	687275	3	INTRON	INTRON	SLC26A11	ENSG00000181045.15	ENST00000361193.8:ENST00000546047.6:ENST00000411502.7:ENST00000571888.5:ENST00000576126.5:ENST00000572725.5:ENST00000571564.5:ENST00000571176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	75	2	5.66698	5.6716999999999995	5.67642	0.0102927	0.00117039	0.0684871	0.0157899
chr2	24725688	24725788	729339	0	+	0.37	(0.36,0.39]	chr2	85069	142	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000406961.5:ENST00000405141.5:ENST00000407230.5:ENST00000288599.9:ENST00000395856.3	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	5.45303	5.6713249999999995	5.88962	0.0166261	0.00525731	0.0884836	0.044445
chr12	28218709	28218809	5194862	0	+	0.34	(0.33,0.36]	chr12	505383	193	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000544780.5:ENST00000543534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	83	2	5.11012	5.67065	6.23118	0.04702	6.87319e-4	0.143232	0.0109073
chr10	79219773	79219873	4533559	0	+	0.52	(0.485,0.523]	chr10	432457	31	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.48966	5.6704799999999995	5.8513	0.0131886	0.0033837199999999998	0.0785398	0.0328791
chr10	70879407	70879506	4504860	0	+	0.535354	(0.523,0.58]	chr10	431039	22	UTR3	UTR3:EXON_MRNA	SGPL1	ENSG00000166224.17	ENST00000373202.8	protein_coding	protein_coding	protein_coding	protein_coding	4	759	2	5.46805	5.67046	5.87287	5.22412e-4	7.64067e-7	0.0132873	8.81938e-5
chr1	1027240	1027339	987	0	+	0.565657	(0.523,0.58]	chr1	166	44	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.40225	5.670445000000001	5.93864	0.0114442	0.00404292	0.0723462	0.0371291
chr1	109622453	109622553	202631	0	+	0.54	(0.523,0.58]	chr1	22202	1	SS5_PROX	SS5_PROX:INTRON	AMPD2	ENSG00000116337.20	ENST00000531734.6:ENST00000655992.1:ENST00000474459.6:ENST00000342115.8:ENST00000528667.7:ENST00000667949.2:ENST00000680519.1:ENST00000680192.1:ENST00000531203.6:ENST00000256578.8:ENST00000681246.1:ENST00000525415.2:ENST00000680170.1:ENST00000679880.1:ENST00000679593.1:ENST00000681108.1:ENST00000681132.1:ENST00000679892.1:ENST00000680929.1:ENST00000680531.1:ENST00000680132.1:ENST00000681181.1:ENST00000680820.1:ENST00000680148.1:ENST00000679981.1:ENST00000681496.1:ENST00000681862.1:ENST00000680832.1:ENST00000681834.1:ENST00000681218.1:ENST00000679379.1:ENST00000652975.2:ENST00000486282.7:ENST00000369840.7:ENST00000528270.6:ENST00000663749.1:ENST00000668421.1:ENST00000659122.2:ENST00000358729.9:ENST00000476688.3:ENST00000526301.6:ENST00000527846.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	80	2	5.40225	5.670445000000001	5.93864	0.0114442	0.00404292	0.0723462	0.0371291
chr7	138509803	138509903	3502499	0	+	0.42	(0.419,0.45]	chr7	337502	50	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	186	2	4.93266	5.6702650000000006	6.40787	0.00835435	2.70433e-4	0.0613588	0.0056322
chr13	77326373	77326473	5734522	0	-	0.7	(0.58,1]	chr13	562332	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MYCBP2	ENSG00000005810.20	ENST00000683823.1:ENST00000684354.1:ENST00000682321.1:ENST00000695079.1:ENST00000683697.1:ENST00000357337.11:ENST00000544440.7:ENST00000695080.1:ENST00000695081.1:ENST00000695090.1:ENST00000695091.1:ENST00000695094.1:ENST00000695095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	76	2	5.30747	5.67009	6.03271	0.0196049	4.18183e-4	0.0955413	0.00770005
chr2	213302681	213302781	1011546	0	+	0.29	[0,0.29]	chr2	111320	2	INTRON	INTRON	SPAG16	ENSG00000144451.20	ENST00000406979.6:ENST00000432529.6:ENST00000413312.5:ENST00000440779.5:ENST00000452556.5:ENST00000331683.10:ENST00000447990.1:ENST00000414961.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	76	2	5.5878	5.669995	5.75219	0.0128957	0.00142668	0.0773953	0.0182112
chr14	69638430	69638529	5869662	0	+	0.444444	(0.419,0.45]	chr14	573213	228	INTRON	INTRON	SUSD6	ENSG00000100647.8	ENST00000342745.5	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	5.32195	5.66995	6.01795	0.0431627	0.00152916	0.138403	0.0191213
chr20	41045224	41045324	7478597	0	+	0.38	(0.36,0.39]	chr20	778843	154	INTRON	INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	80	2	5.37307	5.6698	5.96653	0.0361409	0.00155347	0.127853	0.0193429
chr17	57648053	57648153	6763704	0	+	0.53	(0.523,0.58]	chr17	682183	150	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000675656.1:ENST00000442934.6:ENST00000579505.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	212	2	4.56174	5.66978	6.77782	0.00322317	9.47932e-5	0.0362983	0.00262417
chr3	124746778	124746878	1555440	0	+	0.51	(0.485,0.523]	chr3	164821	28	UTR3	UTR3:EXON_MRNA	UMPS	ENSG00000114491.14	ENST00000232607.7	protein_coding	protein_coding	protein_coding	protein_coding	3	274	2	3.84089	5.669779999999999	7.49867	5.99913e-4	5.58513e-4	0.0143535	0.00944382
chr17	4852918	4853018	6672082	0	+	0.6	(0.58,1]	chr17	668609	189	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	82	2	5.14497	5.669585	6.1942	0.00474658	0.00368616	0.0413976	0.0389784
chr1	51252767	51252867	121519	0	+	0.47	(0.45,0.485]	chr1	15274	155	INTRON	INTRON	RNF11	ENSG00000123091.5	ENST00000242719.4:ENST00000494873.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	91	2	4.95056	5.66952	6.38848	0.0127826	0.0059625	0.0773423	0.0506812
chr22	40459730	40459829	7813877	0	-	0.444444	(0.419,0.45]	chr22	819465	236	INTRON	INTRON	MRTFA	ENSG00000196588.21	ENST00000651595.2:ENST00000396617.7:ENST00000355630.10:ENST00000652095.2:ENST00000407029.7:ENST00000402042.7:ENST00000402630.5:ENST00000651694.1:ENST00000422851.1:ENST00000673719.1	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.44447	5.669455	5.89444	0.0364384	0.00206691	0.128173	0.0235758
chr12	10998502	10998601	5370874	0	-	0.383838	(0.36,0.39]	chr12	526822	3	INTRON	INTRON	ENSG00000275778:PRH1:TAS2R14	ENSG00000275778.2:ENSG00000231887.8:ENSG00000212127.6	ENST00000536668.2:ENST00000535024.6:ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000381852.4:ENST00000534923.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	80	2	5.53855	5.669305	5.80006	0.0191255	0.00432809	0.0952349	0.0389438
chr10	79292756	79292856	4534295	0	+	0.61	(0.58,1]	chr10	432485	4	SS5_PROX	SS5_PROX:INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10:ENST00000478357.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	75	2	5.43752	5.669035	5.90055	0.0156166	6.1741e-4	0.0849828	0.0101143
chr17	80822889	80822978	6811693	0	+	0.426966	(0.419,0.45]	chr17	687861	2	SS3_PROX	SS3_PROX:INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000570891.5:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	88	2	4.9329	5.668925	6.40495	0.0716557	5.72149e-4	0.168159	0.00960229
chr5	138349333	138349432	2543291	0	+	0.515152	(0.485,0.523]	chr5	252559	25	UTR3	UTR3:EXON_MRNA	FAM53C	ENSG00000120709.11	ENST00000239906.10	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.39869	5.668875	5.93906	0.0113657	0.00421243	0.0723462	0.0380601
chr14	19304014	19304114	5928402	0	-	0.58	(0.523,0.58]	chr14	580402	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	170	2	4.4841	5.668775	6.85345	0.00216679	6.06023e-4	0.0292299	0.0100269
chr7	74500500	74500599	3391832	0	+	0.606061	(0.58,1]	chr7	327343	460	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.63543	5.6686700000000005	5.70191	0.00964351	0.00131165	0.0659937	0.0171898
chr14	103103745	103103842	5921850	0	+	0.639175	(0.58,1]	chr14	579208	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000559116.1:ENST00000560925.5:ENST00000560102.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	849	2	4.89824	5.668655	6.43907	1.85998e-4	7.94433e-8	0.00769604	2.04949e-5
chr2	219124410	219124510	1372769	0	-	0.57	(0.523,0.58]	chr2	146361	4	SS5_PROX	SS5_PROX:INTRON	NHEJ1	ENSG00000187736.13	ENST00000356853.10:ENST00000409720.5:ENST00000418099.5:ENST00000494211.5:ENST00000426304.5:ENST00000491159.5:ENST00000483627.1:ENST00000457600.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	78	2	5.39327	5.66858	5.94389	0.0277354	0.0010207	0.112851	0.0143498
chr16	46900890	46900990	6442592	0	+	0.53	(0.523,0.58]	chr16	639006	1	SS5_PROX	SS5_PROX:INTRON	GPT2	ENSG00000166123.14	ENST00000340124.9:ENST00000562132.5:ENST00000440783.2	protein_coding	protein_coding	protein_coding	protein_coding	1	169	2	4.72884	5.66835	6.60786	0.00345115	2.96905e-4	0.037649	0.00603096
chr2	10164047	10164147	717941	0	+	0.4	(0.39,0.419]	chr2	84002	79	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	80	2	5.53798	5.668340000000001	5.7987	0.0195328	0.0043589	0.0955413	0.0391245
chr22	46648222	46648322	7744660	0	+	0.44	(0.419,0.45]	chr22	812052	99	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.39934	5.668265	5.93719	0.0176643	0.00646489	0.0909046	0.0503748
chr10	119442952	119443043	4595686	0	+	0.538462	(0.523,0.58]	chr10	439227	5	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.5788	5.66811	5.75742	0.0155135	0.00262418	0.0849828	0.0278348
chr12	132528388	132528488	5352899	0	+	0.67	(0.58,1]	chr12	523669	4	SS5_PROX	SS5_PROX:INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.41094	5.66811	5.92528	0.0062948	0.00240622	0.0523832	0.0261006
chr4	6299659	6299758	2010598	0	+	0.555556	(0.523,0.58]	chr4	205141	41	INTRON	INTRON	WFS1	ENSG00000109501.15	ENST00000673991.1:ENST00000503569.5:ENST00000226760.5:ENST00000682275.1:ENST00000506362.2:ENST00000684087.1:ENST00000683395.1:ENST00000673642.1:ENST00000507765.1:ENST00000513395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	78	2	5.5788	5.66811	5.75742	0.0155135	0.00262418	0.0849828	0.0278348
chr9	87511601	87511701	4175565	0	+	0.38	(0.36,0.39]	chr9	397139	47	INTRON	INTRON	DAPK1	ENSG00000196730.13	ENST00000358077.9:ENST00000469640.6:ENST00000472284.5:ENST00000469067.5:ENST00000408954.8:ENST00000622514.4:ENST00000496522.5:ENST00000472344.1:ENST00000491893.5:ENST00000489291.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	82	2	5.36211	5.66803	5.97395	0.0145438	0.00643924	0.0823572	0.0503748
chr15	42565425	42565523	6088860	0	+	0.397959	(0.39,0.419]	chr15	599091	12	INTRON	INTRON	HAUS2	ENSG00000137814.12	ENST00000568876.5:ENST00000567640.5:ENST00000260372.8:ENST00000391623.8:ENST00000563479.5:ENST00000564279.5:ENST00000570178.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	82	2	5.19579	5.66798	6.14017	0.0469937	0.00100955	0.143232	0.0142887
chr6	1818951	1819051	3081062	0	-	0.4	(0.39,0.419]	chr6	299482	760	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	250	2	4.59766	5.667975	6.73829	0.00411485	1.73298e-4	0.0414433	0.0040962
chr14	63486348	63486448	5992402	0	-	0.39	(0.36,0.39]	chr14	587804	321	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	178	2	4.62851	5.66785	6.70719	0.00423228	5.71258e-4	0.0422099	0.00960229
chr10	102649011	102649111	4576514	0	+	0.51	(0.485,0.523]	chr10	437280	28	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	445	2	5.29303	5.6675699999999996	6.04211	7.4349e-4	5.01121e-6	0.0161032	3.16039e-4
chr22	23640823	23640923	7771162	0	-	0.46	(0.45,0.485]	chr22	815018	4	SS3_PROX	SS3_PROX:INTRON	GUSBP11	ENSG00000228315.12	ENST00000422506.5:ENST00000445682.2:ENST00000452737.5:ENST00000451837.5:ENST00000455485.5:ENST00000430357.4	lncRNA	lncRNA	lncRNA	lncRNA	0	80	2	5.2551	5.6675	6.0799	0.0373953	8.68466e-4	0.130656	0.0128564
chr7	6702094	6702192	3542734	0	-	0.459184	(0.45,0.485]	chr7	342318	13	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	2	459	2	5.33515	5.66741	5.99967	7.94169e-4	7.11435e-6	0.016765	4.05301e-4
chr10	102648214	102648314	4576506	0	+	0.55	(0.523,0.58]	chr10	437280	20	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	169	2	4.74483	5.667365	6.5899	0.00356891	2.83162e-4	0.0383188	0.00581439
chr17	27555465	27555564	6703344	0	+	0.484848	(0.45,0.485]	chr17	672859	44	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000583370.5:ENST00000398988.7:ENST00000268763.10:ENST00000509603.6:ENST00000582311.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	78	2	5.57854	5.667295	5.75605	0.0230065	0.002004	0.102982	0.0230381
chr16	14530953	14531053	6553155	0	-	0.46	(0.45,0.485]	chr16	652280	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11:ENST00000539279.5:ENST00000651049.1:ENST00000650960.1:ENST00000651634.1:ENST00000564113.6:ENST00000564904.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	176	2	4.92548	5.667235	6.40899	0.00574958	1.9525e-4	0.0499659	0.0044508
chr7	103909107	103909207	3662888	0	-	0.35	(0.33,0.36]	chr7	353506	13	INTRON	INTRON	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1:ENST00000681401.1:ENST00000679689.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	96	2	4.64131	5.666869999999999	6.69243	0.0867669	1.94643e-4	0.182221	0.00443969
chr14	56584009	56584107	5825839	0	+	0.428571	(0.419,0.45]	chr14	569604	36	INTRON	INTRON	TMEM260	ENSG00000070269.14	ENST00000556810.5:ENST00000556422.5:ENST00000261556.11:ENST00000557657.5:ENST00000555497.5:ENST00000556975.5:ENST00000557626.5:ENST00000539559.6:ENST00000538838.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	224	2	4.38783	5.666845	6.94586	0.00640854	1.32913e-4	0.0529785	0.00337193
chr10	16682530	16682630	4640196	0	-	0.48	(0.45,0.485]	chr10	443180	887	INTRON	INTRON	RSU1	ENSG00000148484.18	ENST00000345264.10:ENST00000377921.7:ENST00000602389.1:ENST00000464074.6:ENST00000377911.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	78	2	5.61431	5.6667950000000005	5.71928	0.0217589	0.00219685	0.100615	0.0245167
chr1	8757934	8758034	395136	0	-	0.33	(0.29,0.33]	chr1	45073	42	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	1	174	2	4.31586	5.66672	7.01758	0.00135436	0.00104125	0.0224546	0.0146264
chr13	45024106	45024205	5580548	0	+	0.454545	(0.45,0.485]	chr13	550395	33	INTRON	INTRON	GPALPP1	ENSG00000133114.18	ENST00000379151.9:ENST00000361121.6:ENST00000497558.5:ENST00000357537.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	80	2	5.43172	5.666695000000001	5.90167	0.0137135	0.00440365	0.0799457	0.0393688
chr5	148393416	148393515	2562863	0	+	0.464646	(0.45,0.485]	chr5	254487	35	INTRON	INTRON	FBXO38	ENSG00000145868.17	ENST00000296701.10:ENST00000503613.5:ENST00000340253.10:ENST00000394370.7:ENST00000508326.5:ENST00000509411.5:ENST00000511080.5:ENST00000504971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	79	2	5.34301	5.66658	5.99015	0.0328801	0.00110015	0.122593	0.015136
chr3	125368307	125368407	1902709	0	-	0.41	(0.39,0.419]	chr3	193003	106	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000471196.1	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.56518	5.66648	5.76778	0.027797	0.0025422	0.112962	0.0271978
chr6	56514457	56514555	3152776	0	-	0.397959	(0.39,0.419]	chr6	307611	27	INTRON	INTRON	DST	ENSG00000151914.22	ENST00000244364.10:ENST00000312431.10:ENST00000421834.6:ENST00000680361.1:ENST00000370788.6:ENST00000520645.6:ENST00000340834.10:ENST00000361203.7	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.60095	5.6664449999999995	5.73194	0.0263614	0.00276973	0.110638	0.0286873
chr1	43565402	43565501	107093	0	+	0.555556	(0.523,0.58]	chr1	13192	111	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	171	2	4.40581	5.66632	6.92683	0.00188118	7.57639e-4	0.0270971	0.0117078
chrX	133923054	133923154	8115398	0	-	0.47	(0.45,0.485]	chrX	845529	881	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	636	2	5.33515	5.666169999999999	5.99719	7.94169e-4	1.56203e-6	0.016765	1.40814e-4
chr3	53672722	53672822	1478185	0	+	0.47	(0.45,0.485]	chr3	158772	3	SS3_PROX	SS3_PROX:INTRON	CACNA1D	ENSG00000157388.20	ENST00000637424.1:ENST00000288139.11:ENST00000350061.11:ENST00000636938.1:ENST00000422281.7:ENST00000636570.1:ENST00000640483.1:ENST00000636627.1:ENST00000481085.5:ENST00000464429.1:ENST00000481478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	79	2	5.51989	5.665995000000001	5.8121	0.0158765	0.00357389	0.0859576	0.0342681
chrX	44531331	44531430	8035895	0	-	0.464646	(0.45,0.485]	chrX	838192	36	INTRON	INTRON	FUNDC1	ENSG00000069509.6	ENST00000378045.5:ENST00000483115.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	79	2	5.51989	5.665995000000001	5.8121	0.0158765	0.00357389	0.0859576	0.0342681
chr6	41586698	41586794	2912918	0	+	0.6875	(0.58,1]	chr6	285787	3	SS3_PROX	SS3_PROX:INTRON	FOXP4	ENSG00000137166.17	ENST00000307972.10:ENST00000373063.7:ENST00000409208.5:ENST00000373057.7	protein_coding	protein_coding	protein_coding	protein_coding	1	160	2	4.40362	5.665900000000001	6.92818	7.72338e-4	5.10596e-4	0.0164417	0.00886422
chr8	140670460	140670558	4089770	0	-	0.326531	(0.29,0.33]	chr8	388670	3	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519465.5:ENST00000519993.5:ENST00000340930.7:ENST00000523539.5:ENST00000519419.5:ENST00000524202.5:ENST00000430260.6:ENST00000521986.5:ENST00000523805.5:ENST00000520460.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	86	2	5.07997	5.665850000000001	6.25173	0.00913217	0.00588805	0.0632458	0.0506158
chr7	4737438	4737538	3309893	0	+	0.61	(0.58,1]	chr7	320808	542	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	2	424	2	5.39569	5.66572	5.93575	7.89162e-5	1.97256e-5	0.00494046	8.30908e-4
chr1	48224795	48224895	120947	0	+	0.54	(0.523,0.58]	chr1	15163	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	79	2	5.26332	5.665395	6.06747	0.0337698	7.30845e-4	0.124319	0.0113963
chr1	14942923	14943022	43836	0	+	0.50505	(0.485,0.523]	chr1	4384	125	INTRON	INTRON	KAZN	ENSG00000189337.17	ENST00000636203.1:ENST00000376030.7:ENST00000491547.1:ENST00000503743.5:ENST00000361144.9:ENST00000400798.6:ENST00000376028.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	212	2	4.57471	5.665355	6.756	0.00312631	1.07056e-4	0.0356998	0.00288045
chr17	68577948	68578047	6960037	0	-	0.343434	(0.33,0.36]	chr17	709975	197	INTRON	INTRON	FAM20A	ENSG00000108950.12	ENST00000592554.2:ENST00000590074.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	86	2	4.95163	5.665145	6.37866	0.0583482	4.63001e-4	0.155373	0.00825119
chr5	79982085	79982185	2710593	0	-	0.42	(0.419,0.45]	chr5	266941	55	UTR3	UTR3:EXON_MRNA	MTX3	ENSG00000177034.17	ENST00000512528.3:ENST00000617335.4:ENST00000512560.5:ENST00000509852.6	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.57051	5.6651299999999996	5.75975	0.0231013	0.00441471	0.102982	0.0393688
chr11	484357	484456	4784649	0	+	0.585859	(0.58,1]	chr11	457913	39	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	75	2	5.39546	5.6651	5.93474	0.0168207	5.58693e-4	0.0884836	0.00944382
chr22	50706452	50706552	7755249	0	+	0.51	(0.485,0.523]	chr22	812776	3	SS5_PROX	SS5_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	86	2	5.08528	5.665065	6.24485	0.0086528	0.00665813	0.0612699	0.0540577
chr16	47658707	47658807	6444912	0	+	0.39	(0.36,0.39]	chr16	639205	74	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000568171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	87	2	5.10608	5.66504	6.224	0.0111429	0.00967792	0.071709	0.0661428
chr1	153945534	153945623	592848	0	-	0.516854	(0.485,0.523]	chr1	69076	4	INTRON	INTRON	DENND4B	ENSG00000198837.10	ENST00000361217.9	protein_coding	protein_coding	protein_coding	protein_coding	1	169	2	4.66851	5.66469	6.66087	0.00309962	3.66019e-4	0.0355173	0.00700609
chr2	241668860	241668941	1078219	0	+	0.654321	(0.58,1]	chr2	117194	1	SS5_PROX	SS5_PROX:INTRON	ATG4B	ENSG00000168397.17	ENST00000405546.7:ENST00000402096.5:ENST00000494465.5:ENST00000404914.8:ENST00000482507.5:ENST00000344376.9:ENST00000428861.1:ENST00000460211.5:ENST00000475693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	75	2	5.59324	5.66463	5.73602	0.00904546	0.0014734	0.0637469	0.0185589
chr4	715439	715538	1993782	0	+	0.585859	(0.58,1]	chr4	203088	91	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	75	2	5.59324	5.66463	5.73602	0.00904546	0.0014734	0.0637469	0.0185589
chr7	1016026	1016126	3526383	0	-	0.67	(0.58,1]	chr7	340572	55	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	75	2	5.59324	5.66463	5.73602	0.00904546	0.0014734	0.0637469	0.0185589
chr10	103703205	103703305	4757132	0	-	0.57	(0.523,0.58]	chr10	454791	97	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	79	2	5.44845	5.664585000000001	5.88072	0.0126258	0.00361636	0.0761905	0.0342681
chr12	123654126	123654225	5347072	0	+	0.383838	(0.36,0.39]	chr12	522778	10	INTRON	INTRON	GTF2H3	ENSG00000111358.14	ENST00000618160.4:ENST00000542279.5:ENST00000543341.7:ENST00000228955.11:ENST00000538845.5:ENST00000539994.5:ENST00000537695.5:ENST00000536375.5:ENST00000543415.5:ENST00000538533.5:ENST00000543154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	80	2	5.33106	5.664065	5.99707	0.0383628	0.00143949	0.131324	0.0183435
chr10	87537506	87537605	4541308	0	+	0.393939	(0.39,0.419]	chr10	433103	160	INTRON	INTRON	MINPP1	ENSG00000107789.16	ENST00000371994.8:ENST00000371996.9:ENST00000536010.1:ENST00000472891.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	79	2	5.49088	5.663895	5.83691	0.0309972	0.00215135	0.119758	0.0241566
chr2	31872043	31872142	1115556	0	-	0.313131	(0.29,0.33]	chr2	122032	17	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000422936.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	79	2	5.43954	5.663775	5.88801	0.0112593	0.00401582	0.0720977	0.0371286
chr16	79090217	79090317	6505322	0	+	0.56	(0.523,0.58]	chr16	645723	496	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	78	2	5.35124	5.66352	5.9758	0.0295772	9.36996e-4	0.116079	0.0135546
chr3	65538663	65538762	1810852	0	-	0.535354	(0.523,0.58]	chr3	187255	59	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5:ENST00000476403.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	78	2	5.35124	5.66352	5.9758	0.0295772	9.36996e-4	0.116079	0.0135546
chr20	41559925	41560024	7564237	0	-	0.494949	(0.485,0.523]	chr20	790090	82	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	176	2	4.22394	5.66308	7.10222	0.00132433	0.00129102	0.0222129	0.0170457
chr20	45037210	45037310	7485873	0	+	0.47	(0.45,0.485]	chr20	780008	117	INTRON	INTRON	STK4	ENSG00000101109.12	ENST00000499879.6:ENST00000372806.8:ENST00000372801.5	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.6428	5.66305	5.6833	0.0195193	0.00265386	0.0955413	0.027979
chr1	43563508	43563608	107074	0	+	0.52	(0.485,0.523]	chr1	13192	92	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	79	2	5.44489	5.6630199999999995	5.88115	0.012541	0.00377098	0.0761905	0.0353672
chr16	29274012	29274112	6433577	0	+	0.58	(0.523,0.58]	chr16	636745	219	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	78	2	5.53665	5.662945000000001	5.78924	0.0147166	0.00291382	0.0826843	0.0298557
chr7	892474	892518	3307708	0	+	0.545455	(0.523,0.58]	chr7	320472	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000407192.5:ENST00000464468.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	78	2	5.53665	5.662945000000001	5.78924	0.0147166	0.00291382	0.0826843	0.0298557
chr17	77351198	77351298	6803871	0	+	0.57	(0.523,0.58]	chr17	686742	270	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	227	2	4.04513	5.66275	7.28037	9.39615e-4	5.84273e-4	0.0183413	0.00974635
chr16	85425820	85425920	6517329	0	+	0.45	(0.419,0.45]	chr16	646391	665	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	85	2	5.20508	5.66249	6.1199	0.0132894	0.00979452	0.0787251	0.0664239
chr7	75935805	75935905	3396813	0	+	0.52	(0.485,0.523]	chr7	328054	125	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000449920.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	82	2	5.25048	5.662455	6.07443	0.00899749	0.0059614	0.0637469	0.0479866
chr12	132784507	132784607	5540299	0	-	0.37	(0.36,0.39]	chr12	546787	2	SS3_PROX	SS3_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	79	2	5.4536	5.66222	5.87084	0.0321864	0.00196738	0.121593	0.022768300000000002
chr8	629537	629637	3932015	0	-	0.64	(0.58,1]	chr8	376005	19	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	156	2	4.67156	5.662135	6.65271	0.00141059	2.20504e-4	0.0229261	0.00485102
chr10	122115230	122115330	4599652	0	+	0.51	(0.485,0.523]	chr10	439774	16	INTRON	INTRON	TACC2	ENSG00000138162.19	ENST00000369005.6:ENST00000513429.5:ENST00000515603.5:ENST00000515273.5:ENST00000334433.7:ENST00000358010.5:ENST00000453444.6:ENST00000493951.5:ENST00000369001.5:ENST00000492237.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	226	2	4.19686	5.662105	7.12735	0.00126041	3.85026e-4	0.0215793	0.00726802
chr9	134352109	134352209	4260944	0	+	0.64	(0.58,1]	chr9	406311	251	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	76	2	5.45872	5.661815	5.86491	0.00707578	0.00211999	0.0558168	0.0239744
chr14	102987779	102987878	6056297	0	-	0.515152	(0.485,0.523]	chr14	594475	8	INTRON	INTRON	CDC42BPB	ENSG00000198752.11	ENST00000361246.7:ENST00000558321.5:ENST00000561271.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	81	2	5.30159	5.661695	6.0218	0.00985907	0.00529578	0.0670775	0.044517
chr4	3367684	3367783	2005113	0	+	0.616162	(0.58,1]	chr4	204663	243	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	156	2	4.76267	5.661614999999999	6.56056	0.00171861	1.64538e-4	0.025659	0.0039392
chr19	3529203	3529302	7191590	0	+	0.555556	(0.523,0.58]	chr19	732249	10	INTRON	INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	77	2	5.55012	5.661495	5.77287	0.0217068	0.00160162	0.100615	0.0197827
chr2	70936629	70936728	827610	0	+	0.50505	(0.485,0.523]	chr2	93298	33	INTRON	INTRON	VAX2	ENSG00000116035.4	ENST00000432367.6:ENST00000646783.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	78	2	5.53308	5.661375	5.78967	0.0146211	0.00304306	0.0826064	0.0306636
chr8	142299485	142299585	4094035	0	-	0.58	(0.523,0.58]	chr8	388979	146	INTRON	INTRON	TSNARE1	ENSG00000171045.16	ENST00000524325.6:ENST00000307180.4:ENST00000520166.5:ENST00000519651.5:ENST00000662555.1	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.51247	5.6606000000000005	5.80873	0.0230387	0.00145893	0.102982	0.0184991
chr11	112255378	112255477	4942418	0	+	0.444444	(0.419,0.45]	chr11	476600	175	INTRON	INTRON	PTS	ENSG00000150787.8	ENST00000531673.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	80	2	5.52959	5.660235	5.79088	0.022052	0.00484244	0.101502	0.0418176
chr17	28112105	28112205	6704799	0	+	0.46	(0.45,0.485]	chr17	673022	633	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	78	2	5.42587	5.66015	5.89443	0.0290571	0.00141013	0.116079	0.0180659
chr21	43604272	43604372	7677113	0	-	0.52	(0.485,0.523]	chr21	802562	116	INTRON	INTRON	HSF2BP	ENSG00000160207.9	ENST00000291560.7	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.55054	5.659915	5.76929	0.0215787	0.00167976	0.100612	0.0203806
chr1	41192440	41192540	454435	0	-	0.36	(0.33,0.36]	chr1	54682	58	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000488592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	80	2	5.25292	5.6599	6.06688	0.0384256	0.00105663	0.131324	0.0147548
chr14	70026544	70026644	5872648	0	+	0.49	(0.485,0.523]	chr14	573363	27	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.58723	5.65987	5.73251	0.0203514	0.00184599	0.0979211	0.0217471
chr6	144306175	144306275	3020069	0	+	0.52	(0.485,0.523]	chr6	295138	139	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.58723	5.65987	5.73251	0.0203514	0.00184599	0.0979211	0.0217471
chr1	149519454	149519543	238778	0	+	0.460674	(0.45,0.485]	chr1	26720	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF19	ENSG00000271383.8	ENST00000651566.2:ENST00000611931.4:ENST00000612881.4:ENST00000369227.7:ENST00000426482.3	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.60298	5.659784999999999	5.71659	0.018513	0.00292492	0.0928429	0.029882
chrX	75274758	75274858	7909827	0	+	0.47	(0.45,0.485]	chrX	828572	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	UPRT	ENSG00000094841.14	ENST00000652605.1:ENST00000373383.9:ENST00000531704.5:ENST00000373379.5:ENST00000462237.5:ENST00000373373.8:ENST00000530743.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	78	2	5.60298	5.659784999999999	5.71659	0.018513	0.00292492	0.0928429	0.029882
chr19	36772524	36772624	7371317	0	-	0.64	(0.58,1]	chr19	764162	4	SS5_PROX	SS5_PROX:INTRON	ZNF850	ENSG00000267041.6	ENST00000589390.5:ENST00000614887.4:ENST00000591344.2	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	4.76284	5.65963	6.55642	0.0471737	8.22236e-5	0.143232	0.00236215
chr14	104889958	104890058	5926125	0	+	0.6	(0.58,1]	chr14	579998	2	SS5_PROX	SS5_PROX:INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.54978	5.65956	5.76934	0.00849371	0.00165911	0.0617717	0.0202545
chr9	14792442	14792542	4279627	0	-	0.47	(0.45,0.485]	chr9	408902	3	SS5_PROX	SS5_PROX:INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7:ENST00000466679.1:ENST00000497634.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	174	2	4.37217	5.65948	6.94679	0.00214762	9.45601e-4	0.0291055	0.0136002
chr8	81684070	81684169	4009531	0	-	0.363636	(0.36,0.39]	chr8	383047	21	INTRON	INTRON	IMPA1	ENSG00000133731.10	ENST00000256108.10:ENST00000311489.8:ENST00000449740.6:ENST00000523942.5:ENST00000518188.5:ENST00000523710.5:ENST00000519964.5:ENST00000521360.5:ENST00000521979.5:ENST00000522997.5:ENST00000518202.5:ENST00000519816.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	83	2	5.26508	5.659345	6.05361	0.0127951	0.00795848	0.0769416	0.0578938
chr12	116085772	116085872	5512038	0	-	0.36	(0.33,0.36]	chr12	542755	628	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000648737.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	78	2	5.61211	5.65921	5.70631	0.022456	0.00260751	0.102751	0.0278222
chr3	52724228	52724328	1780580	0	-	0.39	(0.36,0.39]	chr3	185419	120	INTRON	INTRON	NEK4	ENSG00000114904.13	ENST00000233027.10:ENST00000535191.5	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.214	5.659190000000001	6.10438	0.0117824	0.00887999	0.073726	0.0618231
chr17	4853617	4853717	6672089	0	+	0.52	(0.485,0.523]	chr17	668609	196	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	77	2	5.623	5.658885	5.69477	0.0192139	0.00203227	0.095424900000000007	0.0232814
chr6	82005938	82006038	3190017	0	-	0.53	(0.523,0.58]	chr6	309363	365	INTRON	INTRON	LINC02542	ENSG00000226453.3	ENST00000667666.1:ENST00000663543.1:ENST00000668303.1:ENST00000660637.1:ENST00000668266.1:ENST00000666226.1	lncRNA	lncRNA	lncRNA	lncRNA	1	205	2	4.35334	5.658815000000001	6.96429	0.0048052599999999996	5.38186e-5	0.0452736	0.0017322
chr10	34675796	34675878	4670412	0	-	0.487805	(0.485,0.523]	chr10	445530	3	EXON_PSEUDO	EXON_PSEUDO:INTRON	PARD3:RPS12P16	ENSG00000148498.17:ENSG00000215184.2	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6:ENST00000399739.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	2	226	2	4.32053	5.658805	6.99708	0.00162697	2.66161e-4	0.0249683	0.00556524
chr2	38326305	38326405	1123823	0	-	0.37	(0.36,0.39]	chr2	123019	69	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	82	2	5.14958	5.65871	6.16784	0.0493212	9.334e-4	0.146207	0.0135546
chr17	81231237	81231297	6983574	0	-	0.566667	(0.523,0.58]	chr17	713417	2	SS5_PROX	SS5_PROX:INTRON	TEPSIN	ENSG00000167302.11	ENST00000300714.7:ENST00000637944.2:ENST00000573295.5:ENST00000576090.5:ENST00000571115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	77	2	5.65749	5.65854	5.65959	0.0182707	0.0021416	0.0921579	0.0240825
chr21	31700100	31700199	7649803	0	-	0.424242	(0.419,0.45]	chr21	800034	30	INTRON	INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000467731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	79	2	5.55739	5.6583749999999995	5.75936	0.0310506	0.00285253	0.119758	0.0294017
chr2	27778444	27778541	736596	0	+	0.453608	(0.45,0.485]	chr2	86475	36	INTRON	INTRON	MRPL33	ENSG00000243147.8	ENST00000379666.7:ENST00000296102.8:ENST00000448427.1:ENST00000483992.5:ENST00000476552.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	459	2	5.45821	5.658175	5.85814	6.20507e-4	1.11653e-5	0.0146109	5.5674e-4
chr10	18571157	18571257	4642440	0	-	0.41	(0.39,0.419]	chr10	443321	188	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	179	2	4.36902	5.65812	6.94722	0.00283905	0.00115295	0.033773	0.0157112
chr11	120329094	120329189	4951111	0	+	0.336842	(0.33,0.36]	chr11	478339	11	INTRON	INTRON	TLCD5	ENSG00000181264.9	ENST00000531346.1:ENST00000314475.6:ENST00000375095.3:ENST00000529187.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	78	2	5.50203	5.657970000000001	5.81391	0.0265895	0.00200357	0.111433	0.0230381
chr17	4289129	4289229	6841670	0	-	0.4	(0.39,0.419]	chr17	692442	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1:ENST00000571953.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	79	2	5.41254	5.65771	5.90288	0.0347088	0.00183094	0.12648	0.0216571
chr14	89604133	89604233	6030155	0	-	0.38	(0.36,0.39]	chr14	591496	1101	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000555353.5:ENST00000555855.5	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.31441	5.6577	6.00099	0.0139273	0.00715023	0.0805916	0.0541241
chr15	80799997	80800097	6163827	0	+	0.45	(0.419,0.45]	chr15	606634	200	INTRON	INTRON	CEMIP	ENSG00000103888.17	ENST00000220244.7:ENST00000394685.8:ENST00000356249.9	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	4.9329	5.65752	6.38214	0.0716557	6.07209e-4	0.168159	0.0100293
chr17	749622	749713	6824484	0	-	0.571429	(0.523,0.58]	chr17	689920	4	SS5_PROX	SS5_PROX:INTRON	GEMIN4	ENSG00000179409.11	ENST00000319004.6:ENST00000437269.1:ENST00000573482.5:ENST00000570364.5:ENST00000576383.1:ENST00000574958.1	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.30795	5.65748	6.00701	0.0315825	8.61362e-4	0.120781	0.0127848
chr2	239962185	239962284	1393438	0	-	0.444444	(0.419,0.45]	chr2	148811	6	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000471378.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	79	2	5.62805	5.657405	5.68676	0.0280406	0.00338051	0.113651	0.0328791
chr20	26010759	26010855	7452331	0	+	0.541667	(0.523,0.58]	chr20	775551	11	EXON_LNCRNA	EXON_LNCRNA	ENSG00000287569	ENSG00000287569.1	ENST00000668826.1	lncRNA	lncRNA	lncRNA	lncRNA	1	169	2	4.83722	5.657195	6.47717	0.00439843	2.14954e-4	0.0429852	0.00476765
chr9	37296898	37296998	4150064	0	+	0.5	(0.485,0.523]	chr9	394666	122	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5:ENST00000463625.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	77	2	5.47425	5.657195	5.84014	0.0243396	0.00139792	0.106588	0.0179863
chr2	239280378	239280478	1391512	0	-	0.57	(0.523,0.58]	chr2	148740	288	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	79	2	5.21727	5.657025	6.09678	0.0361597	6.74499e-4	0.127853	0.0108081
chr3	50174850	50174922	1469151	0	+	0.541667	(0.523,0.58]	chr3	157427	1	SS3_PROX	SS3_PROX:INTRON	SEMA3F	ENSG00000001617.12	ENST00000414301.5:ENST00000450338.5:ENST00000413852.5:ENST00000002829.8:ENST00000434342.5:ENST00000420831.1	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.21727	5.657025	6.09678	0.0361597	6.74499e-4	0.127853	0.0108081
chr3	65545923	65546022	1810925	0	-	0.414141	(0.39,0.419]	chr3	187255	132	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5:ENST00000476403.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	189	2	4.05528	5.65686	7.25844	0.00258839	0.00161191	0.027634	0.0248552
chr19	16379729	16379827	7343728	0	-	0.530612	(0.523,0.58]	chr19	760674	21	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	78	2	5.49322	5.656805	5.82039	0.0139724	0.00324246	0.0805959	0.0319521
chr17	77350799	77350899	6803867	0	+	0.44	(0.419,0.45]	chr17	686742	266	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	179	2	4.56564	5.65601	6.74638	0.00473615	7.35568e-4	0.0449264	0.0114587
chr21	43920514	43920614	7624985	0	+	0.64	(0.58,1]	chr21	796899	37	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.55681	5.6559349999999995	5.75506	0.0126042	9.38062e-4	0.0761905	0.0135546
chr18	80176864	80176964	7183047	0	-	0.51	(0.485,0.523]	chr18	730359	159	INTRON	INTRON	PARD6G	ENSG00000178184.16	ENST00000353265.8	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.30837	5.655889999999999	6.00341	0.0314138	9.07333e-4	0.12069	0.0132726
chr21	42856776	42856876	7675545	0	-	0.47	(0.45,0.485]	chr21	802317	6	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5:ENST00000479429.5:ENST00000463902.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	86	2	4.89685	5.65588	6.41491	0.0614781	0.00034885200000000003	0.158506	0.00674746
chr2	149743859	149743959	921385	0	+	0.45	(0.419,0.45]	chr2	102793	1	SS5_PROX	SS5_PROX:INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	0	79	2	5.4831	5.65579	5.82848	0.0345118	0.00242141	0.126025	0.0261589
chr12	50436216	50436309	5229001	0	+	0.44086	(0.419,0.45]	chr12	507637	2	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.64904	5.6555800000000005	5.66212	0.0266819	0.00368884	0.111563	0.0348088
chr2	233075563	233075663	1057363	0	+	0.46	(0.45,0.485]	chr2	115043	146	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000451407.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	78	2	5.56203	5.6555800000000005	5.74913	0.017574	0.00322991	0.0906595	0.0319521
chr12	132532569	132532669	5352941	0	+	0.6	(0.58,1]	chr12	523670	42	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.51813	5.655480000000001	5.79283	0.013519	8.4246e-4	0.0792526	0.0125912
chr17	83025380	83025479	6990801	0	-	0.59596	(0.58,1]	chr17	715120	105	INTRON	INTRON	B3GNTL1	ENSG00000175711.9	ENST00000320865.4:ENST00000576599.5:ENST00000570947.5:ENST00000571954.5:ENST00000573629.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	74	2	5.51813	5.655480000000001	5.79283	0.013519	8.4246e-4	0.0792526	0.0125912
chr21	43920714	43920814	7624987	0	+	0.62	(0.58,1]	chr21	796899	39	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.51813	5.655480000000001	5.79283	0.013519	8.4246e-4	0.0792526	0.0125912
chr16	85385637	85385737	6516927	0	+	0.59	(0.58,1]	chr16	646391	263	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	4.89007	5.655424999999999	6.42078	0.00872525	0.00230938	0.0612699	0.0302623
chr16	81380477	81380576	6507634	0	+	0.313131	(0.29,0.33]	chr16	645900	30	UTR3	UTR3:EXON_MRNA	GAN	ENSG00000261609.8	ENST00000648994.2	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.44135	5.655139999999999	5.86893	0.0236557	0.00137721	0.105002	0.0178071
chr9	123103990	123104088	4235478	0	+	0.326531	(0.29,0.33]	chr9	402065	9	UTR3	UTR3:EXON_MRNA	RABGAP1	ENSG00000011454.18	ENST00000373647.9	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.44135	5.655139999999999	5.86893	0.0236557	0.00137721	0.105002	0.0178071
chr4	6665108	6665207	2186188	0	-	0.454545	(0.45,0.485]	chr4	221877	27	INTRON	INTRON	LINC02482	ENSG00000251580.3	ENST00000647523.2:ENST00000667300.1	lncRNA	lncRNA	lncRNA	lncRNA	1	208	2	4.03598	5.65461	7.27324	0.00940026	2.82126e-5	0.0653252	0.00107564
chr1	43593001	43593101	107380	0	+	0.55	(0.523,0.58]	chr1	13239	4	SS5_PROX	SS5_PROX:INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	2	224	2	4.16979	5.654555	7.13932	0.00124255	4.04558e-4	0.0214257	0.00753259
chr11	17918594	17918694	5014423	0	-	0.43	(0.419,0.45]	chr11	484612	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528369.5:ENST00000528200.5:ENST00000529440.5:ENST00000529151.5:ENST00000532546.5:ENST00000525920.5:ENST00000532265.5:ENST00000533241.1:ENST00000525168.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	183	2	4.26269	5.654545000000001	7.0464	0.00281529	0.0016249	0.0336649	0.0200276
chr7	74528834	74528934	3392122	0	+	0.51	(0.485,0.523]	chr7	327389	43	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6:ENST00000476977.5:ENST00000489094.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	79	2	5.39869	5.654545000000001	5.9104	0.0119344	0.00421243	0.0741726	0.0380601
chr10	119592796	119592871	4773710	0	-	0.306667	(0.29,0.33]	chr10	456436	1	INTRON	INTRON	TIAL1	ENSG00000151923.18	ENST00000369093.6:ENST00000436547.7:ENST00000489822.5:ENST00000497671.5:ENST00000470781.5:ENST00000462373.1:ENST00000479729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	169	2	4.49339	5.65415	6.81491	0.00202227	6.33841e-4	0.0283135	0.010303
chr22	46917742	46917842	7746572	0	+	0.61	(0.58,1]	chr22	812232	39	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	74	2	5.47839	5.654015	5.82964	0.0145198	7.58111e-4	0.0823104	0.0117078
chr16	81680223	81680322	6510113	0	+	0.575758	(0.523,0.58]	chr16	645979	12	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	1	212	2	4.60423	5.653895	6.70356	0.00296812	1.18392e-4	0.0346919	0.00311099
chr21	43957736	43957836	7625361	0	+	0.67	(0.58,1]	chr21	796924	21	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000448845.1:ENST00000422850.5:ENST00000546158.1	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.63118	5.6538	5.67642	0.0109983	0.00117039	0.0708586	0.0157899
chr16	16038095	16038194	6406890	0	+	0.373737	(0.36,0.39]	chr16	633041	11	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	79	2	5.53855	5.65374	5.76893	0.0200694	0.00432809	0.0971995	0.0389438
chr3	53828058	53828158	1785000	0	-	0.38	(0.36,0.39]	chr3	186100	36	INTRON	INTRON	CHDH	ENSG00000016391.11	ENST00000315251.11:ENST00000481668.5:ENST00000467802.1	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.53855	5.65374	5.76893	0.0200694	0.00432809	0.0971995	0.0389438
chr20	49698681	49698781	7576023	0	-	0.57	(0.523,0.58]	chr20	791530	416	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	1	168	2	4.4841	5.65356	6.82302	0.00229691	6.06023e-4	0.0302623	0.0100269
chr1	146992462	146992546	232323	0	+	0.416667	(0.39,0.419]	chr1	25751	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF12	ENSG00000268043.8	ENST00000617931.4:ENST00000611443.4:ENST00000617844.4:ENST00000439206.6:ENST00000613714.2	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	5.36155	5.653285	5.94502	0.0155393	0.00648185	0.0849828	0.0503748
chr15	45068376	45068468	6096693	0	+	0.423913	(0.419,0.45]	chr15	600192	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SORD	ENSG00000140263.15	ENST00000674405.1:ENST00000558789.5:ENST00000267814.14:ENST00000559230.5:ENST00000674368.1:ENST00000674387.1:ENST00000558580.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	79	2	5.61031	5.652855000000001	5.6954	0.0254103	0.004032	0.108573	0.0371291
chr15	22558489	22558589	6059859	0	+	0.45	(0.419,0.45]	chr15	594971	10	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	221	2	3.88645	5.652725	7.419	0.0149102	3.4701e-5	0.083462	0.00125791
chr17	38726597	38726697	6729349	0	+	0.63	(0.58,1]	chr17	676371	11	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	MLLT6	ENSG00000275023.5	ENST00000621332.5:ENST00000619356.1:ENST00000615741.1:ENST00000615441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	185	2	4.38234	5.652620000000001	6.9229	0.00280346	2.46059e-5	0.033628	9.771e-4
chr3	43537619	43537719	1753906	0	-	0.35	(0.33,0.36]	chr3	180792	1045	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.42367	5.65255	5.88143	0.0299185	0.00169367	0.116945	0.0204799
chr13	113497371	113497465	5658244	0	+	0.56383	(0.523,0.58]	chr13	555678	10	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000473287.1	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.39327	5.65227	5.91127	0.0277354	0.00111349	0.112851	0.0152496
chr4	163116758	163116858	2358945	0	-	0.36	(0.33,0.36]	chr4	235660	61	INTRON	INTRON	NAF1	ENSG00000145414.9	ENST00000509434.5	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.59003	5.65221	5.71439	0.0191308	0.00344516	0.0952349	0.0333853
chr6	158055428	158055528	3060053	0	+	0.34	(0.33,0.36]	chr6	297401	4	SS5_PROX	SS5_PROX:INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	78	2	5.59003	5.65221	5.71439	0.0191308	0.00344516	0.0952349	0.0333853
chrX	69676365	69676464	7896908	0	+	0.40404	(0.39,0.419]	chrX	827356	57	INTRON	INTRON	EDA	ENSG00000158813.18	ENST00000374553.6:ENST00000374548.5:ENST00000502251.5:ENST00000533317.5:ENST00000525810.5:ENST00000527388.5:ENST00000374552.9:ENST00000524573.5:ENST00000503592.5:ENST00000510681.2:ENST00000530321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	89	2	4.82439	5.652085	6.47978	0.0762206	4.14458e-4	0.174484	0.00767522
chr2	24264719	24264818	1103769	0	-	0.363636	(0.36,0.39]	chr2	120492	26	INTRON	INTRON	ITSN2	ENSG00000198399.16	ENST00000355123.9:ENST00000361999.7:ENST00000406921.7	protein_coding	protein_coding	protein_coding	protein_coding	1	176	2	4.5642	5.651935	6.73967	0.00399663	6.80573e-4	0.0409578	0.0108629
chr21	45109342	45109442	7629007	0	+	0.48	(0.45,0.485]	chr21	797509	342	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	83	2	5.00859	5.65184	6.29509	0.052901	4.85904e-4	0.14912	0.00857996
chr19	33506063	33506162	7365914	0	-	0.535354	(0.523,0.58]	chr19	763467	47	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000651646.1:ENST00000590408.1:ENST00000593163.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	77	2	5.5788	5.651835	5.72487	0.0163679	0.00262418	0.0875379	0.0278348
chr6	144400524	144400624	3021016	0	+	0.32	(0.29,0.33]	chr6	295148	559	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1:ENST00000628146.2:ENST00000421035.2	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.40051	5.6514050000000005	5.9023	0.0252356	0.00126253	0.108065	0.0167512
chr15	90038724	90038824	6183932	0	+	0.42	(0.419,0.45]	chr15	608320	315	INTRON	INTRON	ZNF710	ENSG00000140548.10	ENST00000268154.9:ENST00000559419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	180	2	4.76079	5.65139	6.54199	0.00668959	4.34277e-4	0.0541558	0.00791397
chr18	48658057	48658157	7057848	0	+	0.44	(0.419,0.45]	chr18	720311	210	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1:ENST00000589585.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	84	2	5.04043	5.651389999999999	6.26235	0.0625897	8.27298e-4	0.160305	0.0124589
chr2	20002080	20002180	1096450	0	-	0.42	(0.419,0.45]	chr2	119565	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MATN3	ENSG00000132031.13	ENST00000407540.8:ENST00000421259.2	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	5.04043	5.651389999999999	6.26235	0.0625897	8.27298e-4	0.160305	0.0124589
chr4	4439708	4439808	2184988	0	-	0.53	(0.523,0.58]	chr4	221823	8	INTRON	INTRON	STX18	ENSG00000168818.10	ENST00000505286.5:ENST00000306200.7:ENST00000503861.5:ENST00000512195.5:ENST00000507908.5:ENST00000512780.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	81	2	5.25403	5.650975000000001	6.04792	0.00948306	0.00573579	0.0656057	0.0467736
chrX	44924784	44924884	7872189	0	+	0.48	(0.45,0.485]	chrX	825082	504	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	78	2	5.34301	5.650975	5.95894	0.0328801	0.00119342	0.122593	0.016037
chr5	143368502	143368602	2778934	0	-	0.35	(0.33,0.36]	chr5	272731	540	INTRON	INTRON	NR3C1	ENSG00000113580.15	ENST00000343796.6:ENST00000394464.7:ENST00000415690.6:ENST00000424646.6:ENST00000504572.5:ENST00000394466.6:ENST00000231509.7:ENST00000652686.1:ENST00000503201.1:ENST00000504336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	176	2	4.32945	5.650905	6.97236	0.0021433	0.00117302	0.0291055	0.015816
chr3	81502721	81502821	1846082	0	-	0.45	(0.419,0.45]	chr3	188689	31	INTRON	INTRON	GBE1	ENSG00000114480.13	ENST00000429644.7:ENST00000489715.1	protein_coding	protein_coding	protein_coding	protein_coding	0	94	2	4.85365	5.650565	6.44748	0.0197641	0.00782663	0.100774	0.0592048
chr20	48933003	48933103	7490265	0	+	0.54	(0.523,0.58]	chr20	780774	106	INTRON	INTRON	ARFGEF2	ENSG00000124198.10	ENST00000371917.5:ENST00000681399.1:ENST00000679436.1:ENST00000681885.1:ENST00000681021.1:ENST00000680871.1:ENST00000681656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	312	2	4.03174	5.650435	7.26913	9.60886e-4	1.96837e-4	0.0185615	0.00447577
chr16	85593026	85593126	6519003	0	+	0.47	(0.45,0.485]	chr16	646396	363	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.51989	5.650425	5.78096	0.0166968	0.00357389	0.0884836	0.0342681
chr8	23538486	23538585	3773705	0	+	0.484848	(0.45,0.485]	chr8	363433	67	INTRON	INTRON	SLC25A37	ENSG00000147454.14	ENST00000519973.6:ENST00000290075.10:ENST00000417331.6:ENST00000518881.5:ENST00000520654.1:ENST00000523930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	78	2	5.51989	5.650425	5.78096	0.0166968	0.00357389	0.0884836	0.0342681
chr3	48031909	48032009	1765384	0	-	0.36	(0.33,0.36]	chr3	182011	156	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.37262	5.650375	5.92813	0.0135535	0.00569729	0.0793558	0.046716
chr17	317227	317327	6821448	0	-	0.58	(0.523,0.58]	chr17	689582	107	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	88	2	4.96714	5.6503	6.33346	0.0108948	0.00571732	0.0706366	0.0498083
chr5	59732356	59732456	2671462	0	-	0.43	(0.419,0.45]	chr5	264360	1460	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000507116.5:ENST00000502484.6:ENST00000309641.10:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	83	2	5.25615	5.65028	6.04441	0.0149622	0.00879729	0.0835955	0.0615125
chr5	857371	857470	2607928	0	-	0.545455	(0.523,0.58]	chr5	259417	64	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	0	86	2	4.84569	5.650175	6.45466	0.0610722	2.45921e-4	0.158506	0.00524396
chr13	98538596	98538696	5747907	0	-	0.44	(0.419,0.45]	chr13	563357	167	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	218	2	4.16516	5.650125	7.13509	0.00938072	7.8188e-5	0.0652879	0.00227541
chr2	200332668	200332767	986217	0	+	0.212121	[0,0.29]	chr2	108291	28	INTRON	INTRON	SPATS2L	ENSG00000196141.14	ENST00000439084.5:ENST00000409718.5:ENST00000358677.9:ENST00000409988.7:ENST00000409385.5:ENST00000439395.5:ENST00000444012.5:ENST00000451764.6:ENST00000360760.9:ENST00000423749.5:ENST00000457757.5:ENST00000471601.5:ENST00000428692.5:ENST00000453663.5:ENST00000409140.8:ENST00000459656.5:ENST00000471533.5:ENST00000409397.6:ENST00000619961.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	263	2	3.72557	5.65005	7.57453	6.7367e-4	2.07554e-4	0.0108081	0.00813372
chr16	81629286	81629386	6509590	0	+	0.54	(0.523,0.58]	chr16	645926	72	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.44845	5.64966	5.85087	0.0132767	0.00361636	0.0787251	0.0342681
chr2	102735835	102735932	1242156	0	-	0.525773	(0.523,0.58]	chr2	133932	31	INTRON	INTRON	MFSD9	ENSG00000135953.11	ENST00000258436.10:ENST00000438943.5:ENST00000437075.6:ENST00000411991.5:ENST00000421966.1:ENST00000462099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	78	2	5.44845	5.64966	5.85087	0.0132767	0.00361636	0.0787251	0.0342681
chr17	75976356	75976454	6973998	0	-	0.408163	(0.39,0.419]	chr17	711682	22	INTRON	INTRON	ACOX1	ENSG00000161533.12	ENST00000293217.10:ENST00000572047.5:ENST00000573078.5:ENST00000301608.8:ENST00000591857.5:ENST00000588176.5:ENST00000589301.1:ENST00000576743.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	292	2	3.55966	5.649615	7.73957	0.00166172	6.54536e-4	0.0202819	0.0150543
chr10	29651940	29652040	4657867	0	-	0.43	(0.419,0.45]	chr10	444727	48	INTRON	INTRON	SVIL	ENSG00000197321.16	ENST00000375400.7:ENST00000674475.1:ENST00000674490.1	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.40477	5.649605	5.89444	0.0385125	0.00206691	0.131324	0.0235758
chr7	2377575	2377657	3308498	0	+	0.585366	(0.58,1]	chr7	320689	1	INTRON	INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000475415.5:ENST00000468611.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	78	2	5.0607	5.649509999999999	6.23832	0.029633	2.24165e-4	0.116079	0.00490779
chrX	135323994	135324094	8117095	0	-	0.49	(0.485,0.523]	chrX	845635	276	INTRON	INTRON	ZNF75D	ENSG00000186376.15	ENST00000494295.1:ENST00000370766.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	81	2	5.25048	5.649414999999999	6.04835	0.00941539	0.0059614	0.0653252	0.0479866
chr6	1737181	1737281	3080243	0	-	0.46	(0.45,0.485]	chr6	299476	103	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	80	2	5.16149	5.649134999999999	6.13678	0.0427653	7.46272e-4	0.13762	0.0115813
chr6	32155511	32155587	2895629	0	+	0.513158	(0.485,0.523]	chr6	283489	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPT2:PPT2-EGFL8	ENSG00000221988.13:ENSG00000258388.7	ENST00000414204.5:ENST00000361568.6:ENST00000478521.5:ENST00000395523.5:ENST00000428388.6:ENST00000585246.5:ENST00000375137.6:ENST00000375143.6:ENST00000324816.11:ENST00000424499.1:ENST00000493548.5:ENST00000422437.5:ENST00000436118.2:ENST00000453656.6:ENST00000583227.5:ENST00000465047.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	88	2	4.96361	5.64875	6.33389	0.0112713	0.00567224	0.071709	0.0496143
chr10	102648413	102648513	4576508	0	+	0.55	(0.523,0.58]	chr10	437280	22	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	269	2	3.8186	5.648725000000001	7.47885	6.30946e-4	5.79146e-4	0.0147478	0.00966947
chr20	47287784	47287879	7570196	0	-	0.484211	(0.45,0.485]	chr20	791048	1	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	638	2	5.13326	5.64851	6.16376	1.46683e-4	2.52455e-5	0.00675599	9.95279e-4
chr12	6607582	6607665	5363063	0	-	0.722892	(0.58,1]	chr12	525396	1	SS3_PROX	SS3_PROX:INTRON	CHD4	ENSG00000111642.16	ENST00000643335.1:ENST00000646787.1:ENST00000647426.1:ENST00000645265.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	78	2	5.25731	5.6481200000000005	6.03893	0.00503456	0.00358178	0.0464858	0.0342681
chr17	82006540	82006640	6815362	0	+	0.61	(0.58,1]	chr17	688641	23	EXON_MRNA	EXON_MRNA:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	876	2	5.25349	5.64811	6.04273	6.09303e-5	7.5368e-7	0.00433505	8.71746e-5
chr1	2155298	2155396	4177	0	+	0.479592	(0.45,0.485]	chr1	983	40	INTRON	INTRON	PRKCZ	ENSG00000067606.17	ENST00000378567.8:ENST00000400921.6:ENST00000461106.6:ENST00000486681.5:ENST00000479263.5:ENST00000503672.1:ENST00000478770.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	77	2	5.50422	5.648065	5.79191	0.0257993	0.00183113	0.109555	0.0216571
chr9	108901024	108901124	4362802	0	-	0.47	(0.45,0.485]	chr9	416550	2	SS5_PROX	SS5_PROX:INTRON	ELP1	ENSG00000070061.16	ENST00000675765.1:ENST00000374647.10:ENST00000675078.1:ENST00000674948.1:ENST00000676121.1:ENST00000676429.1:ENST00000674704.1:ENST00000674938.1:ENST00000675602.1:ENST00000675215.1:ENST00000676044.1:ENST00000675979.1:ENST00000675325.1:ENST00000495759.6:ENST00000675893.1:ENST00000675943.1:ENST00000675535.1:ENST00000674890.1:ENST00000675233.1:ENST00000676086.1:ENST00000674836.1:ENST00000675406.1:ENST00000675748.1:ENST00000675400.1:ENST00000676237.1:ENST00000675825.1:ENST00000676424.1:ENST00000675647.1:ENST00000675877.1:ENST00000676416.1:ENST00000675052.1:ENST00000674535.1:ENST00000537196.1:ENST00000675566.1:ENST00000675507.1:ENST00000675727.1:ENST00000675711.1:ENST00000675458.1:ENST00000675335.1:ENST00000675321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	77	2	5.50422	5.648065	5.79191	0.0257993	0.00183113	0.109555	0.0216571
chr1	91780815	91780915	526762	0	-	0.5	(0.485,0.523]	chr1	61906	95	INTRON	INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	621	2	4.44122	5.648005	6.85479	0.00169309	3.31712e-7	0.0255001	5.05992e-5
chr22	17827881	17827981	7757816	0	-	0.41	(0.39,0.419]	chr22	813059	1	SS3_PROX	SS3_PROX:INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000498573.5:ENST00000578984.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	80	2	5.40772	5.64799	5.88826	0.0169925	0.00585126	0.0889149	0.0474117
chr1	44246050	44246149	459633	0	-	0.454545	(0.45,0.485]	chr1	55307	36	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	77	2	5.61431	5.64793	5.68155	0.0217589	0.00241241	0.100615	0.0261086
chr3	186167716	186167816	1972868	0	-	0.39	(0.36,0.39]	chr3	200590	23	INTRON	INTRON	DGKG	ENSG00000058866.15	ENST00000265022.8:ENST00000344484.8:ENST00000382164.8:ENST00000490452.5:ENST00000480809.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	78	2	5.49224	5.647785	5.80333	0.0304242	0.00231859	0.11845	0.0255753
chr22	37511920	37512000	7808325	0	-	0.55	(0.523,0.58]	chr22	818438	1	UTR5	UTR5:EXON_MRNA:INTRON	CARD10	ENSG00000100065.15	ENST00000403299.5:ENST00000251973.10:ENST00000437756.5:ENST00000494166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	83	2	5.14602	5.647765	6.14951	0.00793972	0.00734367	0.0596361	0.0550721
chr2	8740184	8740274	1083288	0	-	0.377778	(0.36,0.39]	chr2	117890	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KIDINS220	ENSG00000134313.17	ENST00000569008.2:ENST00000689369.1:ENST00000693394.1:ENST00000689852.1:ENST00000693597.1:ENST00000693432.1:ENST00000496383.5:ENST00000256707.8:ENST00000687912.1:ENST00000685097.1:ENST00000473731.5:ENST00000687894.1:ENST00000691030.1:ENST00000686383.1:ENST00000686906.1:ENST00000488729.5:ENST00000489024.5:ENST00000638224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	78	2	5.6372	5.64761	5.65802	0.024533	0.003279	0.106796	0.0322062
chr11	96068398	96068498	5110819	0	-	0.52	(0.485,0.523]	chr11	496560	763	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6:ENST00000618849.1	protein_coding	protein_coding	protein_coding	protein_coding	2	315	2	4.48488	5.6474150000000005	6.80995	0.00155025	9.11162e-5	0.0243127	0.00255001
chr1	39117505	39117605	93796	0	+	0.52	(0.485,0.523]	chr1	11068	114	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000689911.1:ENST00000567887.5:ENST00000372915.8:ENST00000472385.2:ENST00000693209.1:ENST00000524432.5:ENST00000467673.5:ENST00000688212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	202	2	4.12658	5.64714	7.1677	0.00731354	3.05856e-5	0.0568523	0.00114404
chr5	131521621	131521721	2756176	0	-	0.32	(0.29,0.33]	chr5	270111	1	SS3_PROX	SS3_PROX:INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000514179.5:ENST00000513227.5:ENST00000504575.5:ENST00000504039.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	77	2	5.35847	5.646694999999999	5.93492	0.0269557	0.00115909	0.112113	0.0157704
chr18	47919471	47919571	7157576	0	-	0.4	(0.39,0.419]	chr18	727768	71	INTRON	INTRON	SMAD2	ENSG00000175387.16	ENST00000262160.11:ENST00000402690.6:ENST00000356825.8:ENST00000591214.5:ENST00000587269.5:ENST00000586514.5:ENST00000587421.5:ENST00000589877.5:ENST00000585978.1	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.63585	5.646649999999999	5.65745	0.025023	0.00330348	0.10758	0.0323993
chr1	171496700	171496800	274201	0	+	0.38	(0.36,0.39]	chr1	31996	106	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	82	2	5.26508	5.64631	6.02754	0.0133452	0.00795848	0.0789398	0.0578938
chr3	179014634	179014734	1962270	0	-	0.46	(0.45,0.485]	chr3	199388	101	INTRON	INTRON	ZMAT3	ENSG00000172667.11	ENST00000652290.1	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.46558	5.646240000000001	5.8269	0.0273644	0.00167585	0.112372	0.0203806
chr1	154985965	154986065	249117	0	+	0.6	(0.58,1]	chr1	28887	15	INTRON	INTRON	FLAD1	ENSG00000160688.19	ENST00000492620.1:ENST00000292180.8:ENST00000368433.5:ENST00000315144.14:ENST00000368432.5:ENST00000368431.7:ENST00000487371.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	75	2	5.45872	5.646235	5.83375	0.00751249	0.00211999	0.0576451	0.0239744
chr16	1528280	1528378	6533131	0	-	0.612245	(0.58,1]	chr16	649069	11	INTRON	INTRON	IFT140	ENSG00000187535.14	ENST00000426508.7:ENST00000361339.9:ENST00000397417.6:ENST00000565298.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	75	2	5.45872	5.646235	5.83375	0.00751249	0.00211999	0.0576451	0.0239744
chr16	83921757	83921857	6513142	0	+	0.52	(0.485,0.523]	chr16	646141	64	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	79	2	5.17012	5.646015	6.12191	0.038581	6.58016e-4	0.131324	0.0106077
chr17	61397838	61397938	6939778	0	-	0.52	(0.485,0.523]	chr17	707563	25	INTRON	INTRON	TBX2-AS1	ENSG00000267280.6	ENST00000591313.6:ENST00000590421.1:ENST00000592009.1:ENST00000589814.5	lncRNA	lncRNA	lncRNA	lncRNA	0	79	2	5.17012	5.646015	6.12191	0.038581	6.58016e-4	0.131324	0.0106077
chrX	1416981	1417079	7965649	0	-	0.479592	(0.45,0.485]	chrX	834254	38	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.6428	5.64601	5.64922	0.020599	0.00265386	0.0982852	0.027979
chr21	43727643	43727742	7623870	0	+	0.656566	(0.58,1]	chr21	796696	39	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000438837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	159	2	4.33402	5.6457049999999995	6.95739	7.23847e-4	6.31529e-4	0.0158739	0.0102754
chr19	4543013	4543096	7313579	0	-	0.662651	(0.58,1]	chr19	754808	1	CDS	CDS:UTR3:EXON_MRNA	SEMA6B	ENSG00000167680.17	ENST00000676793.1:ENST00000586582.6:ENST00000677828.1:ENST00000586965.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	185	2	4.43794	5.645525	6.85311	0.00248717	3.10807e-5	0.0315244	0.00115612
chr18	48929534	48929633	7157798	0	-	0.393939	(0.39,0.419]	chr18	727796	73	INTRON	INTRON	SMAD7	ENSG00000101665.10	ENST00000262158.8:ENST00000545051.2:ENST00000591805.5:ENST00000589634.1:ENST00000587336.1:ENST00000585986.1:ENST00000586093.1:ENST00000588190.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	82	2	5.26451	5.645345	6.02618	0.0136549	0.00800901	0.0798074	0.0580954
chr16	67601141	67601241	6472464	0	+	0.47	(0.45,0.485]	chr16	642672	282	INTRON	INTRON	CTCF	ENSG00000102974.16	ENST00000646076.1:ENST00000644852.1:ENST00000264010.10:ENST00000401394.6:ENST00000646771.1:ENST00000642847.1:ENST00000644753.1:ENST00000642819.1:ENST00000645306.1:ENST00000643892.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	172	2	4.37217	5.645315	6.91846	0.00226513	9.45601e-4	0.0300628	0.0136002
chr2	239343885	239343985	1392149	0	-	0.45	(0.419,0.45]	chr2	148752	194	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	81	2	5.35317	5.64518	5.93719	0.0176643	0.00714797	0.0909046	0.0541241
chr10	35335627	35335727	4673268	0	-	0.48	(0.45,0.485]	chr10	445749	3	SS5_PROX	SS5_PROX:INTRON	CCNY-AS1	ENSG00000271335.6	ENST00000659251.1:ENST00000605499.1	lncRNA	lncRNA	lncRNA	lncRNA	1	178	2	4.15879	5.644864999999999	7.13094	0.00168387	0.00151409	0.0240218	0.0204246
chr10	75493796	75493896	4521096	0	+	0.42	(0.419,0.45]	chr10	432249	422	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	247	2	4.51168	5.6447400000000005	6.7778	0.00448826	2.44038e-4	0.0436138	0.00522003
chr6	3321368	3321467	3086699	0	-	0.454545	(0.45,0.485]	chr6	299762	228	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000467144.5:ENST00000496753.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	278	2	3.66163	5.64456	7.62749	0.00104211	5.75076e-4	0.0146361	0.0140419
chr16	51148187	51148287	6588398	0	-	0.48	(0.45,0.485]	chr16	658639	44	INTRON	INTRON	SALL1	ENSG00000103449.13	ENST00000251020.9:ENST00000685868.1:ENST00000440970.6:ENST00000566102.1:ENST00000570206.2:ENST00000690502.1:ENST00000562674.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	79	2	5.20906	5.64448	6.0799	0.0399616	8.68466e-4	0.133954	0.0128564
chr3	195241396	195241495	1982440	0	-	0.474747	(0.45,0.485]	chr3	201717	142	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000429994.5:ENST00000418940.5:ENST00000494175.1:ENST00000455281.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	79	2	5.20906	5.64448	6.0799	0.0399616	8.68466e-4	0.133954	0.0128564
chr20	37815047	37815147	7474410	0	+	0.36	(0.33,0.36]	chr20	778329	116	INTRON	INTRON	CTNNBL1	ENSG00000132792.19	ENST00000405275.6:ENST00000621317.4:ENST00000361383.11:ENST00000628103.2:ENST00000373473.5:ENST00000473857.5:ENST00000373469.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	82	2	5.22448	5.64398	6.06348	0.0108257	0.00791583	0.0707085	0.057762
chr20	64269401	64269500	7511206	0	+	0.393939	(0.39,0.419]	chr20	783907	10	INTRON	INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609818.1	protein_coding	protein_coding	protein_coding	protein_coding	1	183	2	4.14584	5.64386	7.14188	0.00205794	0.00199601	0.0280662	0.0235341
chr9	131430459	131430559	4257982	0	+	0.31	(0.29,0.33]	chr9	405614	2	SS5_PROX	SS5_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	2	437	2	5.44686	5.643610000000001	5.84036	4.78983e-4	1.04888e-5	0.0126557	5.32675e-4
chr7	100026260	100026360	3429042	0	+	0.5	(0.485,0.523]	chr7	331533	14	INTRON	INTRON	ZKSCAN1	ENSG00000106261.17	ENST00000535170.5:ENST00000324306.11:ENST00000426572.5:ENST00000620510.1	protein_coding	protein_coding	protein_coding	protein_coding	1	167	2	4.51045	5.64351	6.77657	0.00248912	5.78208e-4	0.0315244	0.00965478
chr13	113331375	113331475	5753244	0	-	0.68	(0.58,1]	chr13	564094	49	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.35214	5.64344	5.93474	0.0181452	5.58693e-4	0.0921579	0.00944382
chr16	89306043	89306142	6659872	0	-	0.676768	(0.58,1]	chr16	666665	3	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1:ENST00000647539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	183	2	4.26426	5.642955000000001	7.02165	0.00360545	1.76307e-5	0.0385302	7.68293e-4
chr1	2172888	2172972	4359	0	+	0.678571	(0.58,1]	chr1	1007	1	INTRON	INTRON	PRKCZ	ENSG00000067606.17	ENST00000378567.8:ENST00000400921.6:ENST00000461106.6:ENST00000479263.5:ENST00000478770.6:ENST00000505322.5:ENST00000472017.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	74	2	5.54978	5.6429	5.73602	0.00904546	0.00165911	0.0637469	0.0202545
chr14	104892575	104892675	5926152	0	+	0.66	(0.58,1]	chr14	580000	2	SS3_PROX	SS3_PROX:INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.54978	5.6429	5.73602	0.00904546	0.00165911	0.0637469	0.0202545
chr20	62888484	62888582	7585194	0	-	0.653061	(0.58,1]	chr20	792848	14	UTR3	UTR3:EXON_MRNA:INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.54978	5.6429	5.73602	0.00904546	0.00165911	0.0637469	0.0202545
chr7	47350141	47350241	3587292	0	-	0.67	(0.58,1]	chr7	346030	34	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.54978	5.6429	5.73602	0.00904546	0.00165911	0.0637469	0.0202545
chr9	137569531	137569630	4435759	0	-	0.575758	(0.523,0.58]	chr9	424466	40	INTRON	INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000475100.5:ENST00000472113.5:ENST00000485189.5:ENST00000467768.5:ENST00000477690.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	76	2	5.5868	5.64257	5.69834	0.020474	0.00194036	0.0979776	0.0225083
chr2	239087458	239087558	1389550	0	-	0.67	(0.58,1]	chr2	148611	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000487617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	156	2	4.44822	5.6425350000000005	6.83685	9.44859e-4	4.4502e-4	0.0183873	0.00806076
chr3	133818766	133818861	1572936	0	+	0.389474	(0.36,0.39]	chr3	166820	15	INTRON	INTRON	SRPRB	ENSG00000144867.13	ENST00000466490.7:ENST00000678299.1:ENST00000494297.5:ENST00000481356.1:ENST00000466636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	78	2	5.4139	5.64237	5.87084	0.0340874	0.00196738	0.125059	0.022768300000000002
chr19	48153771	48153871	7394082	0	-	0.57	(0.523,0.58]	chr19	768552	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LIG1	ENSG00000105486.14	ENST00000263274.12:ENST00000536218.5:ENST00000427526.6:ENST00000594759.5:ENST00000594067.5:ENST00000601091.5:ENST00000613670.4:ENST00000542460.5:ENST00000595758.5:ENST00000596104.5:ENST00000599165.5:ENST00000596549.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	166	2	4.71267	5.64219	6.57171	0.00369199	3.11451e-4	0.0389784	0.00624487
chr21	43692590	43692689	7623746	0	+	0.333333	(0.33,0.36]	chr21	796678	7	INTRON	INTRON	RRP1B	ENSG00000160208.13	ENST00000340648.6:ENST00000470886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	80	2	5.15931	5.6415299999999995	6.12375	0.043896	9.1162e-4	0.139792	0.0133249
chr1	9294240	9294335	19596	0	+	0.494737	(0.485,0.523]	chr1	2201	8	INTRON	INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.55054	5.641525	5.73251	0.0215787	0.00184599	0.100612	0.0217471
chr17	17772935	17773035	6689765	0	+	0.51	(0.485,0.523]	chr17	671344	484	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.55054	5.641525	5.73251	0.0215787	0.00184599	0.100612	0.0217471
chr22	28918780	28918880	7705629	0	+	0.51	(0.485,0.523]	chr22	806321	9	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7:ENST00000402174.5	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.55054	5.641525	5.73251	0.0215787	0.00184599	0.100612	0.0217471
chr12	26790527	26790627	5401175	0	-	0.36	(0.33,0.36]	chr12	528740	3	SS3_PROX	SS3_PROX:INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000545235.1:ENST00000242737.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	77	2	5.53966	5.64137	5.74308	0.0251076	0.00238447	0.107672	0.0260514
chr6	100857752	100857849	3213537	0	-	0.319588	(0.29,0.33]	chr6	312007	16	UTR3	UTR3:EXON_MRNA:INTRON	ASCC3	ENSG00000112249.14	ENST00000369162.7:ENST00000324696.8:ENST00000522650.5:ENST00000468245.2:ENST00000324723.10:ENST00000369143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	94	2	4.58769	5.64111	6.69453	0.0806047	1.39595e-4	0.177452	0.00349292
chr22	32813425	32813525	7792793	0	-	0.38	(0.36,0.39]	chr22	817442	1832	INTRON	INTRON	SYN3	ENSG00000185666.15	ENST00000358763.7:ENST00000462268.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	80	2	5.19713	5.641055	6.08498	0.0462258	0.00115345	0.143138	0.0157112
chr4	25410971	25411069	2020333	0	+	0.367347	(0.36,0.39]	chr4	206594	8	INTRON	INTRON	ANAPC4	ENSG00000053900.11	ENST00000315368.8:ENST00000510092.5:ENST00000505842.5:ENST00000504256.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	80	2	5.19713	5.641055	6.08498	0.0462258	0.00115345	0.143138	0.0157112
chr1	31414877	31414977	80073	0	+	0.48	(0.45,0.485]	chr1	9153	1	SS5_PROX	SS5_PROX:INTRON	SERINC2	ENSG00000168528.12	ENST00000373710.5:ENST00000536859.5:ENST00000487207.5:ENST00000373709.8:ENST00000536384.2:ENST00000491976.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	131	2	4.11446	5.64099	7.16752	0.0592571	0.0014116	0.176157	0.0229261
chr4	151122707	151122805	2350479	0	-	0.397959	(0.39,0.419]	chr4	234981	1	INTRON	INTRON	SH3D19	ENSG00000109686.19	ENST00000409598.8:ENST00000604030.7:ENST00000304527.8:ENST00000409252.6:ENST00000514152.5:ENST00000478503.6:ENST00000652233.1:ENST00000427414.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	79	2	5.45246	5.64082	5.82918	0.0186329	0.00529344	0.0932878	0.044517
chr1	173204810	173204910	618738	0	-	0.43	(0.419,0.45]	chr1	73214	1	SS5_PROX	SS5_PROX:INTRON	TNFSF4	ENSG00000117586.11	ENST00000281834.4:ENST00000367718.5:ENST00000488053.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	93	2	4.85365	5.64073	6.42781	0.0197641	0.0080847	0.100774	0.0602118
chr18	28164585	28164685	7140522	0	-	0.42	(0.419,0.45]	chr18	726169	49	INTRON	INTRON	CDH2	ENSG00000170558.10	ENST00000269141.8:ENST00000676445.1:ENST00000675708.1:ENST00000430882.6:ENST00000413878.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	93	2	4.85365	5.64073	6.42781	0.0197641	0.0080847	0.100774	0.0602118
chr7	32814447	32814547	3341995	0	+	0.32	(0.29,0.33]	chr7	323416	1	SS3_PROX	SS3_PROX:INTRON	DPY19L1P2	ENSG00000231952.3	ENST00000426647.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	78	2	5.39334	5.640675	5.88801	0.0112593	0.00448059	0.0720977	0.0398484
chr5	180573687	180573787	2606410	0	+	0.45	(0.419,0.45]	chr5	259159	3	SS3_PROX	SS3_PROX:INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.23407	5.640655000000001	6.04724	0.0486006	0.00142238	0.145074	0.0181715
chr2	174352137	174352225	1320995	0	-	0.352273	(0.33,0.36]	chr2	141070	3	SS3_PROX	SS3_PROX:INTRON	CIR1	ENSG00000138433.16	ENST00000342016.8	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.32491	5.64057	5.95623	0.0129408	0.00634179	0.0775979	0.0501889
chr2	237643729	237643829	1070000	0	+	0.3	(0.29,0.33]	chr2	115969	156	INTRON	INTRON	LRRFIP1	ENSG00000124831.19	ENST00000308482.14:ENST00000465870.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	76	2	5.48107	5.64042	5.79977	0.0222022	0.00164635	0.101857	0.0202325
chr2	239344984	239345084	1392160	0	-	0.67	(0.58,1]	chr2	148752	205	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	390	2	5.60632	5.640355	5.67439	1.73629e-4	7.44242e-6	0.00738838	4.17372e-4
chr8	96862229	96862329	3872106	0	+	0.37	(0.36,0.39]	chr8	371372	267	INTRON	INTRON	CPQ	ENSG00000104324.16	ENST00000220763.10	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.36211	5.640195	5.91828	0.0158902	0.00643924	0.0859576	0.0503748
chr19	47230428	47230528	7392386	0	-	0.81	(0.58,1]	chr19	768107	1	SS5_PROX	SS5_PROX:INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	1	154	2	4.79756	5.6399550000000005	6.48235	0.00202884	1.46952e-4	0.0283135	0.00363207
chr10	47533880	47533980	4680521	0	-	0.52	(0.485,0.523]	chr10	446443	100	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	0	78	2	5.39869	5.63992	5.88115	0.012541	0.00421243	0.0761905	0.0380601
chrX	30859286	30859386	8001172	0	-	0.51	(0.485,0.523]	chrX	836741	4	SS5_PROX	SS5_PROX:INTRON	TAB3	ENSG00000157625.16	ENST00000378933.5:ENST00000288422.4:ENST00000378930.7:ENST00000378932.6:ENST00000467136.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	78	2	5.39869	5.63992	5.88115	0.012541	0.00421243	0.0761905	0.0380601
chr5	881474	881571	2608190	0	-	0.546392	(0.523,0.58]	chr5	259472	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	167	2	4.82222	5.63986	6.4575	0.0045605	2.24831e-4	0.0438198	0.00491787
chr18	48603037	48603137	7057295	0	+	0.47	(0.45,0.485]	chr18	720287	623	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.38503	5.63973	5.89443	0.0308908	0.00141013	0.119556	0.0180659
chr20	34565953	34566052	7547087	0	-	0.484848	(0.45,0.485]	chr20	787854	46	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	2	450	2	5.25981	5.639305	6.0188	9.22904e-4	6.69208e-6	0.0181223	3.87822e-4
chr4	163116858	163116957	2358946	0	-	0.434343	(0.419,0.45]	chr4	235660	62	INTRON	INTRON	NAF1	ENSG00000145414.9	ENST00000509434.5	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.48746	5.63917	5.79088	0.022052	0.00532156	0.101502	0.0446153
chr13	112973440	112973540	5655355	0	+	0.53	(0.523,0.58]	chr13	555120	36	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	4.90222	5.6391100000000005	6.376	0.0125132	0.00529293	0.0765738	0.047841
chr1	23392881	23392980	424244	0	-	0.282828	[0,0.29]	chr1	49807	51	INTRON	INTRON	TCEA3	ENSG00000204219.11	ENST00000450454.7:ENST00000476978.2	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.25474	5.638955	6.02317	0.02298	6.82173e-4	0.102982	0.0108717
chr20	37394875	37394973	7473051	0	+	0.55102	(0.523,0.58]	chr20	778188	2	INTRON	INTRON	SRC	ENSG00000197122.13	ENST00000692112.1:ENST00000692423.1:ENST00000373578.7:ENST00000373567.6:ENST00000373558.2:ENST00000358208.9:ENST00000489153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	203	2	4.37804	5.6386400000000005	6.89924	0.00458519	6.56505e-5	0.044038	0.00199995
chr19	1496671	1496771	7187812	0	+	0.55	(0.523,0.58]	chr19	731382	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	REEP6	ENSG00000115255.12	ENST00000233596.8:ENST00000395479.10:ENST00000395484.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	76	2	5.61976	5.638625	5.65749	0.0182707	0.00236826	0.0921579	0.0259199
chr8	38422531	38422630	3967834	0	-	0.474747	(0.45,0.485]	chr8	379271	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	FGFR1	ENSG00000077782.22	ENST00000649678.1:ENST00000397091.9:ENST00000619564.3:ENST00000447712.7:ENST00000341462.9:ENST00000532791.5:ENST00000674380.1:ENST00000674189.1:ENST00000683765.1:ENST00000425967.8:ENST00000683948.1:ENST00000397113.6:ENST00000356207.9:ENST00000335922.9:ENST00000683815.1:ENST00000684654.1:ENST00000326324.10:ENST00000526570.5:ENST00000674474.1:ENST00000397103.5:ENST00000397108.8:ENST00000487647.5:ENST00000674217.1:ENST00000674235.1:ENST00000475621.1:ENST00000530701.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	247	2	5.34301	5.638505	5.934	0.0328801	8.77289e-6	0.122593	4.67292e-4
chr2	231989248	231989348	1051341	0	+	0.32	(0.29,0.33]	chr2	114515	271	INTRON	INTRON	DIS3L2	ENSG00000144535.20	ENST00000273009.10:ENST00000390005.9:ENST00000409401.7:ENST00000445090.5:ENST00000441279.5:ENST00000325385.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	76	2	5.44135	5.638059999999999	5.83477	0.0236557	0.00150459	0.105002	0.0188758
chr7	756089	756185	3306574	0	+	0.59375	(0.58,1]	chr7	320230	9	INTRON	INTRON	DNAAF5	ENSG00000164818.16	ENST00000297440.11:ENST00000437419.5:ENST00000440747.5	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.41094	5.637925	5.86491	0.00707578	0.00240622	0.0558168	0.0261006
chr8	38381660	38381731	3967579	0	-	0.676056	(0.58,1]	chr8	379200	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5:ENST00000316985.7:ENST00000529223.1:ENST00000534155.1	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.41094	5.637925	5.86491	0.00707578	0.00240622	0.0558168	0.0261006
chr18	80177163	80177263	7183050	0	-	0.47	(0.45,0.485]	chr18	730359	162	INTRON	INTRON	PARD6G	ENSG00000178184.16	ENST00000353265.8	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.2551	5.637895	6.02069	0.0373953	0.00101549	0.130656	0.0143256
chr22	50680316	50680413	7754972	0	+	0.474227	(0.45,0.485]	chr22	812716	5	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	78	2	5.2551	5.637895	6.02069	0.0373953	0.00101549	0.130656	0.0143256
chr4	127947815	127947914	2320886	0	-	0.454545	(0.45,0.485]	chr4	233316	18	INTRON	INTRON	MFSD8	ENSG00000164073.11	ENST00000296468.8:ENST00000641686.2:ENST00000641186.1:ENST00000641774.1:ENST00000641748.1:ENST00000641508.1:ENST00000641690.1:ENST00000641928.1:ENST00000641464.1:ENST00000641092.1:ENST00000641397.1:ENST00000641393.1:ENST00000641025.1:ENST00000641509.1:ENST00000642034.1:ENST00000641178.1:ENST00000641147.1:ENST00000641753.1:ENST00000641434.1:ENST00000641482.1:ENST00000641133.1:ENST00000515130.6:ENST00000641332.1:ENST00000641870.1:ENST00000641949.1:ENST00000641228.1:ENST00000641590.1:ENST00000641843.1:ENST00000642078.1:ENST00000641882.1:ENST00000641742.1:ENST00000641658.1:ENST00000513559.6:ENST00000509826.2:ENST00000642042.1:ENST00000641340.1:ENST00000641538.1:ENST00000641369.1:ENST00000642121.1:ENST00000641243.1:ENST00000505284.6:ENST00000641134.1:ENST00000641695.1:ENST00000641503.1:ENST00000641743.1:ENST00000641776.1:ENST00000641264.1:ENST00000642143.1:ENST00000508441.2:ENST00000641558.1:ENST00000641140.1:ENST00000641447.1:ENST00000641356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	78	2	5.2551	5.637895	6.02069	0.0373953	0.00101549	0.130656	0.0143256
chr6	2268607	2268705	2824610	0	+	0.479592	(0.45,0.485]	chr6	277256	24	INTRON	INTRON	GMDS-DT	ENSG00000250903.10	ENST00000657072.1:ENST00000529893.6:ENST00000659523.1:ENST00000659643.1:ENST00000660978.1:ENST00000691004.1:ENST00000664738.1:ENST00000532124.6:ENST00000691547.1:ENST00000663428.1:ENST00000654526.1:ENST00000670895.1:ENST00000532564.8:ENST00000685772.1:ENST00000687264.1:ENST00000660533.1:ENST00000531092.6:ENST00000524770.6:ENST00000657589.1:ENST00000607519.2:ENST00000456943.6:ENST00000525811.5:ENST00000534441.5:ENST00000533653.5:ENST00000534468.1:ENST00000530346.6:ENST00000662000.1:ENST00000665610.1:ENST00000654970.1	lncRNA	lncRNA	lncRNA	lncRNA	0	78	2	5.2551	5.637895	6.02069	0.0373953	0.00101549	0.130656	0.0143256
chr18	13635861	13635961	7026959	0	+	0.51	(0.485,0.523]	chr18	717663	142	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000679091.1:ENST00000677744.1:ENST00000678400.1:ENST00000586207.5:ENST00000587757.5:ENST00000585931.5:ENST00000586765.1:ENST00000677910.1:ENST00000676773.1:ENST00000678556.1:ENST00000361303.7:ENST00000435606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	87	2	4.96361	5.637875	6.31214	0.0112713	0.00589975	0.071709	0.0506158
chr19	4492720	4492816	7193763	0	+	0.479167	(0.45,0.485]	chr19	732770	5	INTRON	INTRON	HDGFL2	ENSG00000167674.15	ENST00000616600.5:ENST00000621835.4:ENST00000589486.5:ENST00000615225.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	78	2	5.43172	5.63715	5.84258	0.0151085	0.00440365	0.0841543	0.0393688
chr1	17676882	17676982	54980	0	+	0.58	(0.523,0.58]	chr1	5603	119	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	286	2	4.14487	5.63713	7.12939	0.00307314	3.23178e-5	0.0354051	0.00118877
chr2	222914322	222914422	1038244	0	+	0.55	(0.523,0.58]	chr2	113229	27	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000542810.1:ENST00000540115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	845	2	5.50708	5.63678	5.76648	1.07173e-4	5.88311e-6	0.00578018	3.54011e-4
chr8	142396193	142396293	4095014	0	-	0.59	(0.58,1]	chr8	389043	298	INTRON	INTRON	TSNARE1	ENSG00000171045.16	ENST00000524325.6:ENST00000307180.4:ENST00000519651.5:ENST00000520462.5:ENST00000518720.5	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.55681	5.636545	5.71628	0.0126042	0.00104668	0.0761905	0.0146403
chr6	158243294	158243394	3060948	0	+	0.26	[0,0.29]	chr6	297572	106	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	75	2	5.34548	5.63645	5.92742	0.0197148	8.88991e-4	0.0958249	0.0130852
chr7	121386398	121386497	3694941	0	-	0.434343	(0.419,0.45]	chr7	355171	30	INTRON	INTRON	FAM3C	ENSG00000196937.11	ENST00000359943.8:ENST00000412653.5:ENST00000426156.1	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	5.1405	5.636105000000001	6.13171	0.0550015	0.00115219	0.153337	0.0157112
chr11	66663657	66663757	4877264	0	+	0.36	(0.33,0.36]	chr11	469623	114	INTRON	INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.37262	5.63604	5.89946	0.0142052	0.00569729	0.0816536	0.046716
chr3	168052359	168052459	1953052	0	-	0.36	(0.33,0.36]	chr3	198615	36	INTRON	INTRON	GOLIM4	ENSG00000173905.9	ENST00000470487.6:ENST00000309027.4	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.37262	5.63604	5.89946	0.0142052	0.00569729	0.0816536	0.046716
chr16	85375842	85375942	6516829	0	+	0.49	(0.485,0.523]	chr16	646391	165	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	5.19749	5.635960000000001	6.07443	0.00899749	0.00672953	0.0637469	0.0519464
chr16	32771696	32771795	6442264	0	+	0.555556	(0.523,0.58]	chr16	638922	2	INTRON	INTRON	HERC2P5	ENSG00000260644.6	ENST00000562687.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	0	79	2	5.30515	5.6359449999999995	5.96674	0.0109075	0.00509102	0.0707085	0.0433513
chr1	161072366	161072464	606668	0	-	0.571429	(0.523,0.58]	chr1	72123	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NECTIN4	ENSG00000143217.9	ENST00000368012.4:ENST00000486694.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	165	2	4.64612	5.63586	6.6256	0.00333843	3.78839e-4	0.0368376	0.00719572
chr16	68100796	68100896	6474867	0	+	0.35	(0.33,0.36]	chr16	643049	112	INTRON	INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	3	294	2	3.38278	5.635655	7.88853	0.00245542	3.62493e-4	0.0265092	0.010899
chr1	2172688	2172788	4357	0	+	0.7	(0.58,1]	chr1	1006	3	SS5_PROX	SS5_PROX:INTRON	PRKCZ	ENSG00000067606.17	ENST00000378567.8:ENST00000400921.6:ENST00000461106.6:ENST00000479263.5:ENST00000478770.6:ENST00000505322.5:ENST00000472017.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	73	2	5.47839	5.63561	5.79283	0.0145198	8.4246e-4	0.0823104	0.0125912
chr17	80876527	80876627	6812236	0	+	0.69	(0.58,1]	chr17	687891	183	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	73	2	5.47839	5.63561	5.79283	0.0145198	8.4246e-4	0.0823104	0.0125912
chr9	124487989	124488088	4402602	0	-	0.626263	(0.58,1]	chr9	419805	46	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.59447	5.635445000000001	5.67642	0.0117666	0.00117039	0.0737098	0.0157899
chr2	3293604	3293704	1081043	0	-	0.58	(0.523,0.58]	chr2	117633	109	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	76	2	5.5788	5.635185	5.69157	0.0172851	0.00262418	0.0897247	0.0278348
chr2	10368737	10368763	719087	0	+	0.538462	(0.523,0.58]	chr2	84034	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4:ENST00000613496.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	76	2	5.5788	5.635185	5.69157	0.0172851	0.00262418	0.0897247	0.0278348
chr6	10587813	10587913	2850425	0	+	0.53	(0.523,0.58]	chr6	278695	5	INTRON	INTRON	GCNT2	ENSG00000111846.20	ENST00000410107.5:ENST00000489225.5:ENST00000397423.7:ENST00000495262.7:ENST00000475577.5:ENST00000489819.5:ENST00000474518.1:ENST00000379597.7:ENST00000485764.1:ENST00000461400.1:ENST00000316170.9:ENST00000459872.1:ENST00000265012.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	76	2	5.5788	5.635185	5.69157	0.0172851	0.00262418	0.0897247	0.0278348
chr17	17820521	17820606	6865725	0	-	0.505882	(0.485,0.523]	chr17	695913	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000395751.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	175	2	4.13042	5.635085	7.13975	0.00166514	0.00122997	0.0212869	0.0203119
chr5	138927668	138927766	2547524	0	+	0.387755	(0.36,0.39]	chr5	252918	19	INTRON	INTRON	CTNNA1	ENSG00000044115.21	ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518825.5:ENST00000540387.5:ENST00000521368.5:ENST00000521387.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	79	2	5.24317	5.635070000000001	6.02697	0.0433841	0.00133548	0.138813	0.0173572
chr5	76426906	76427006	2457366	0	+	0.46	(0.45,0.485]	chr5	245476	220	INTRON	INTRON	IQGAP2	ENSG00000145703.17	ENST00000274364.11:ENST00000692467.1:ENST00000514350.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	169	2	4.48652	5.63505	6.78358	0.00291315	6.88779e-4	0.0342042	0.0109212
chr17	77483928	77484028	6805221	0	+	0.61	(0.58,1]	chr17	686820	17	EXON_MRNA	EXON_MRNA:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	153	2	4.69024	5.634855	6.57947	0.00165065	2.07711e-4	0.0250898	0.00464072
chr12	132784904	132785001	5540303	0	-	0.597938	(0.58,1]	chr12	546788	2	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	182	2	4.18524	5.634575	7.08391	0.00425781	1.42647e-5	0.0422596	6.59187e-4
chr2	32762195	32762294	751841	0	+	0.484848	(0.45,0.485]	chr2	87688	33	INTRON	INTRON	TTC27	ENSG00000018699.13	ENST00000317907.9:ENST00000647819.1:ENST00000433416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	77	2	5.51989	5.634510000000001	5.74913	0.017574	0.00357389	0.0906595	0.0342681
chr19	55266486	55266586	7407582	0	-	0.49	(0.485,0.523]	chr19	771325	2	SS3_PROX	SS3_PROX:INTRON	HSPBP1	ENSG00000133265.11	ENST00000433386.7:ENST00000255631.9:ENST00000587922.5:ENST00000585927.1:ENST00000587959.1	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.30159	5.63438	5.96717	0.0108319	0.00529578	0.0707085	0.044517
chr8	9771499	9771591	3754891	0	+	0.521739	(0.485,0.523]	chr8	360881	9	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.30159	5.63438	5.96717	0.0108319	0.00529578	0.0707085	0.044517
chr16	81629386	81629486	6509591	0	+	0.61	(0.58,1]	chr16	645926	73	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.25731	5.6343250000000005	6.01134	0.00531709	0.00358178	0.047841	0.0342681
chr7	1016624	1016724	3526389	0	-	0.68	(0.58,1]	chr7	340572	61	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	77	2	5.25731	5.6343250000000005	6.01134	0.00531709	0.00358178	0.047841	0.0342681
chr17	340652	340752	6821695	0	-	0.72	(0.58,1]	chr17	689626	1	SS5_PROX	SS5_PROX:INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000577079.5:ENST00000573780.5:ENST00000575130.5:ENST00000575634.5	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	4.89007	5.634145	6.37822	0.00872525	0.00252415	0.0612699	0.031696
chr9	134368277	134368377	4261106	0	+	0.66	(0.58,1]	chr9	406311	413	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	78	2	5.20223	5.63411	6.06599	0.00477081	0.00411607	0.0450109	0.0374453
chr20	62959329	62959426	7508290	0	+	0.474227	(0.45,0.485]	chr20	783180	14	INTRON	INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	79	2	5.33781	5.634075	5.93034	0.0130794	0.0054758	0.0782396	0.0454065
chr6	37911873	37911973	2909763	0	+	0.41	(0.39,0.419]	chr6	285643	915	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	5.04815	5.634065	6.21998	0.0572698	8.22163e-4	0.154343	0.0124043
chr17	30395010	30395109	6710957	0	+	0.363636	(0.36,0.39]	chr17	673915	94	INTRON	INTRON	CPD	ENSG00000108582.12	ENST00000225719.9:ENST00000543464.6	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	4.99672	5.63406	6.2714	0.0604395	7.13729e-4	0.158506	0.0112151
chr16	4082370	4082470	6541454	0	-	0.31	(0.29,0.33]	chr16	650517	283	INTRON	INTRON	ADCY9	ENSG00000162104.10	ENST00000294016.8:ENST00000571467.1:ENST00000572288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	198	2	4.20496	5.63371	7.06246	0.005888	4.64959e-5	0.0506158	0.00156145
chr22	29828789	29828887	7784845	0	-	0.316327	(0.29,0.33]	chr22	816450	8	INTRON	INTRON	ASCC2	ENSG00000100325.15	ENST00000542393.5:ENST00000307790.8:ENST00000458594.5:ENST00000397771.6:ENST00000449900.6:ENST00000431535.5:ENST00000495967.5:ENST00000412689.5:ENST00000465667.6:ENST00000495681.5:ENST00000462454.1:ENST00000453160.5:ENST00000460313.1:ENST00000454854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	77	2	5.43954	5.633605	5.82767	0.0124924	0.00401582	0.0761905	0.0371286
chr9	124258361	124258461	4235498	0	+	0.74	(0.58,1]	chr9	402074	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NEK6	ENSG00000119408.17	ENST00000373603.5:ENST00000540326.5:ENST00000320246.10:ENST00000373600.7:ENST00000545174.5:ENST00000444973.5:ENST00000454453.5	protein_coding	protein_coding	protein_coding	protein_coding	1	193	2	4.73288	5.63359	6.5343	0.00130198	8.82891e-5	0.0220198	0.00248664
chr1	161072170	161072268	606666	0	-	0.489796	(0.485,0.523]	chr1	72123	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NECTIN4	ENSG00000143217.9	ENST00000368012.4:ENST00000486694.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	77	2	5.26375	5.63358	6.00341	0.0335928	9.07333e-4	0.124319	0.0132726
chr16	89294189	89294289	6659747	0	-	0.61	(0.58,1]	chr16	666648	20	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	79	2	4.94882	5.63351	6.3182	0.0354433	1.74994e-4	0.127188	0.00410754
chr7	2050010	2050110	3530732	0	-	0.68	(0.58,1]	chr7	340995	350	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	79	2	4.94882	5.63351	6.3182	0.0354433	1.74994e-4	0.127188	0.00410754
chr11	70792146	70792246	5062203	0	-	0.44	(0.419,0.45]	chr11	492701	743	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	787	2	5.18845	5.633495	6.07854	2.86208e-4	1.69641e-5	0.00961374	7.46414e-4
chr21	43059477	43059564	7675854	0	-	0.574713	(0.523,0.58]	chr21	802386	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CBS	ENSG00000160200.18	ENST00000352178.9:ENST00000359624.7:ENST00000398165.8:ENST00000398158.5:ENST00000461686.5:ENST00000462349.5:ENST00000491776.1:ENST00000430013.1:ENST00000496485.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	172	2	5.0452	5.633235	6.22127	0.00699217	1.14382e-4	0.0555241	0.00303044
chr17	80021603	80021703	6982132	0	-	0.43	(0.419,0.45]	chr17	713081	76	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	4.81671	5.633115	6.44952	0.08258	5.09118e-4	0.179396	0.00884498
chr14	31760088	31760188	5775463	0	+	0.42	(0.419,0.45]	chr14	566303	449	INTRON	INTRON	NUBPL	ENSG00000151413.17	ENST00000550649.5:ENST00000547839.5:ENST00000281081.12:ENST00000549838.5:ENST00000551314.1:ENST00000418681.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	78	2	5.57051	5.632955	5.6954	0.0254103	0.00441471	0.108573	0.0393688
chr14	37248906	37249006	5783581	0	+	0.43	(0.419,0.45]	chr14	566873	6	INTRON	INTRON	MIPOL1	ENSG00000151338.20	ENST00000694961.1:ENST00000396294.6:ENST00000537471.6:ENST00000556615.5:ENST00000554114.2:ENST00000695502.1:ENST00000695405.1:ENST00000695503.1:ENST00000684589.1:ENST00000327441.11:ENST00000694962.1:ENST00000539062.6:ENST00000554930.5:ENST00000556451.5:ENST00000694963.1:ENST00000555870.5:ENST00000694964.1:ENST00000556753.5:ENST00000694965.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	78	2	5.57051	5.632955	5.6954	0.0254103	0.00441471	0.108573	0.0393688
chr21	43743970	43744054	7624049	0	+	0.607143	(0.58,1]	chr21	796747	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000498040.5:ENST00000472777.5:ENST00000481512.5:ENST00000490666.5:ENST00000467908.1:ENST00000343528.10:ENST00000398078.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	82	2	5.02314	5.632795	6.24245	0.00638322	0.00334087	0.0501889	0.0368376
chr17	344517	344617	6821734	0	-	0.43	(0.419,0.45]	chr17	689629	32	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000577079.5:ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.44407	5.632715	5.82136	0.0210659	0.00585948	0.0996078	0.0474117
chr9	128966111	128966211	4248899	0	+	0.43	(0.419,0.45]	chr9	404239	66	INTRON	INTRON	NUP188	ENSG00000095319.14	ENST00000372577.2	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.44407	5.632715	5.82136	0.0210659	0.00585948	0.0996078	0.0474117
chr6	16760102	16760201	3104455	0	-	0.737374	(0.58,1]	chr6	300921	1	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000473388.6:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1:ENST00000467008.5:ENST00000498374.1:ENST00000492857.1:ENST00000479680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	156	2	4.38079	5.632015	6.88324	8.53086e-4	5.47609e-4	0.0173632	0.0093303
chr17	80822801	80822889	6811692	0	+	0.431818	(0.419,0.45]	chr17	687861	1	SS3_PROX	SS3_PROX:INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000570891.5:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	80	2	5.18804	5.631995	6.07595	0.051668	0.00132452	0.148503	0.0173138
chr16	81646281	81646379	6509762	0	+	0.5	(0.485,0.523]	chr16	645932	1	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8:ENST00000564666.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	471	2	5.40728	5.6319	5.85652	2.30104e-4	3.86674e-5	0.00855862	0.00135841
chr7	92672134	92672234	3637320	0	-	0.35	(0.33,0.36]	chr7	350310	2	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000473078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	77	2	5.54909	5.63174	5.71439	0.0191308	0.00379428	0.0952349	0.0355124
chr15	92899210	92899308	6189787	0	+	0.336735	(0.33,0.36]	chr15	609314	12	EXON_LNCRNA	EXON_LNCRNA:INTRON	CHASERR:ENSG00000279765	ENSG00000272888.8:ENSG00000279765.3	ENST00000557682.6:ENST00000629685.2:ENST00000630790.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	0	82	2	5.00642	5.631625	6.25683	0.0542065	6.42061e-4	0.151733	0.0104165
chr7	713499	713596	3525234	0	-	0.556701	(0.523,0.58]	chr7	340440	4	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000537384.6:ENST00000403562.5:ENST00000417852.5:ENST00000488474.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	76	2	5.35124	5.6312549999999995	5.91127	0.0295772	0.00111349	0.116079	0.0152496
chr6	1798061	1798161	3080853	0	-	0.37	(0.36,0.39]	chr6	299482	551	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	84	2	4.94194	5.63123	6.32052	0.064883	6.27541e-4	0.162218	0.0102323
chr22	28675725	28675825	7781790	0	-	0.47	(0.45,0.485]	chr22	815749	326	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7:ENST00000468807.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	175	2	4.18161	5.631145	7.08068	0.00166658	0.00158459	0.0252632	0.0196418
chr4	3364892	3364991	2005085	0	+	0.666667	(0.58,1]	chr4	204663	215	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	74	2	5.26138	5.631085000000001	6.00079	0.021217	4.59827e-4	0.0996078	0.00821903
chr8	17547681	17547780	3763512	0	+	0.292929	(0.29,0.33]	chr8	361508	27	INTRON	INTRON	SLC7A2	ENSG00000003989.18	ENST00000494857.6:ENST00000522656.5:ENST00000470360.5:ENST00000004531.14:ENST00000398090.3:ENST00000640220.1	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	5.07997	5.630555	6.18114	0.00913217	0.00669623	0.0632458	0.0541591
chr11	72701883	72701983	5069926	0	-	0.59	(0.58,1]	chr11	493378	1	SS3_PROX	SS3_PROX:INTRON	ARAP1	ENSG00000186635.15	ENST00000359373.9:ENST00000393609.8:ENST00000465814.5:ENST00000334211.12:ENST00000393605.7:ENST00000426523.5:ENST00000429686.5:ENST00000427971.6:ENST00000452383.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	73	2	5.39546	5.630495	5.86553	0.0168207	6.8352e-4	0.0884836	0.0108717
chr7	6701995	6702094	3542733	0	-	0.515152	(0.485,0.523]	chr7	342318	12	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	1	165	2	4.63485	5.63044	6.62603	0.00330946	4.03769e-4	0.0368376	0.00752123
chr2	62712794	62712894	814025	0	+	0.39	(0.36,0.39]	chr2	92078	51	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000449820.5:ENST00000426940.5:ENST00000413434.5:ENST00000405482.5:ENST00000427809.5:ENST00000494958.1:ENST00000472809.5:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	77	2	5.49224	5.630295	5.76835	0.0304242	0.00252253	0.11845	0.0270357
chr6	15548461	15548561	3098661	0	-	0.41	(0.39,0.419]	chr6	300772	2	INTRON	INTRON	DTNBP1	ENSG00000047579.20	ENST00000344537.10:ENST00000462989.6:ENST00000622898.4:ENST00000355917.7:ENST00000510395.5:ENST00000515875.5:ENST00000513680.5:ENST00000338950.9:ENST00000506844.1:ENST00000511762.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	77	2	5.56518	5.630179999999999	5.69518	0.027797	0.00302238	0.112962	0.0305643
chr11	70784652	70784752	5062128	0	-	0.64	(0.58,1]	chr11	492701	668	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	73	2	5.59324	5.63011	5.66698	0.0102927	0.0014734	0.0684871	0.0185589
chr21	41830225	41830324	7673624	0	-	0.474747	(0.45,0.485]	chr21	801978	15	INTRON	INTRON	PRDM15	ENSG00000141956.14	ENST00000422911.6:ENST00000441787.5:ENST00000449395.6:ENST00000398548.6:ENST00000447016.6:ENST00000269844.5:ENST00000491486.5:ENST00000489661.5:ENST00000496124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	78	2	5.20906	5.62983	6.0506	0.0399616	9.38528e-4	0.133954	0.0135546
chr18	32693377	32693476	7142645	0	-	0.494949	(0.485,0.523]	chr18	726493	58	INTRON	INTRON	KLHL14	ENSG00000197705.10	ENST00000359358.9	protein_coding	protein_coding	protein_coding	protein_coding	1	202	2	3.92311	5.62981	7.33651	0.0105998	1.80479e-5	0.0697435	7.82415e-4
chr7	100634155	100634254	3654948	0	-	0.50505	(0.485,0.523]	chr7	352299	2	INTRON	INTRON	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	636	2	5.38034	5.62976	5.87918	2.41811e-4	8.5328e-6	0.0087916	4.57865e-4
chr1	1717756	1717853	382885	0	-	0.505155	(0.485,0.523]	chr1	43594	9	INTRON	INTRON	CDK11A:ENSG00000268575	ENSG00000008128.23:ENSG00000268575.1	ENST00000404249.8:ENST00000356200.7:ENST00000598846.1:ENST00000357760.6:ENST00000358779.9:ENST00000378633.5:ENST00000460465.5:ENST00000509982.5:ENST00000378638.6:ENST00000356937.7:ENST00000479362.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	0	76	2	5.35167	5.6296800000000005	5.90769	0.0294163	0.0011708	0.116079	0.0157899
chr12	80880764	80880864	5464668	0	-	0.38	(0.36,0.39]	chr12	537360	321	INTRON	INTRON	LIN7A	ENSG00000111052.8	ENST00000552864.6:ENST00000261203.7:ENST00000549417.5:ENST00000552093.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	223	2	4.61436	5.629015	6.64367	0.00380339	2.6343e-4	0.0397683	0.00553857
chr12	69747228	69747327	5262033	0	+	0.454545	(0.45,0.485]	chr12	513178	70	INTRON	INTRON	RAB3IP	ENSG00000127328.22	ENST00000247833.12:ENST00000417413.7:ENST00000483530.6:ENST00000378815.10:ENST00000549760.1:ENST00000550536.5:ENST00000362025.9:ENST00000378809.8:ENST00000552199.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	77	2	5.47648	5.6287199999999995	5.78096	0.0166968	0.0039628	0.0884836	0.0368027
chr22	35416504	35416537	7719498	0	+	0.454545	(0.45,0.485]	chr22	808083	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MCM5	ENSG00000100297.16	ENST00000382011.9:ENST00000216122.9:ENST00000493076.5:ENST00000465557.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	77	2	5.47648	5.6287199999999995	5.78096	0.0166968	0.0039628	0.0884836	0.0368027
chr1	6808787	6808887	8682	0	+	0.48	(0.45,0.485]	chr1	1836	13	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12:ENST00000490738.5:ENST00000476163.5:ENST00000473578.5:ENST00000557126.5:ENST00000467404.6:ENST00000461311.1:ENST00000486138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	76	2	5.61431	5.628555	5.6428	0.0217589	0.00265386	0.100615	0.027979
chr12	108720155	108720254	5493342	0	-	0.464646	(0.45,0.485]	chr12	540397	172	INTRON	INTRON	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000541050.5:ENST00000549384.5:ENST00000550542.5:ENST00000552871.5:ENST00000551550.5:ENST00000546571.5:ENST00000551044.1:ENST00000551059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	76	2	5.61431	5.628555	5.6428	0.0217589	0.00265386	0.100615	0.027979
chr11	8710744	8710844	4987297	0	-	0.6	(0.58,1]	chr11	482701	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DENND2B	ENSG00000166444.19	ENST00000534127.5:ENST00000526757.5:ENST00000313726.11:ENST00000530991.5:ENST00000526099.5:ENST00000530438.5:ENST00000526701.5:ENST00000530559.5:ENST00000533020.5:ENST00000526837.5:ENST00000530338.5:ENST00000532734.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	75	2	5.36153	5.62847	5.89541	0.0066708	0.00273899	0.0540577	0.028553
chr21	45477310	45477410	7631044	0	+	0.7	(0.58,1]	chr21	797688	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.36153	5.62847	5.89541	0.0066708	0.00273899	0.0540577	0.028553
chr16	85426420	85426520	6517335	0	+	0.53	(0.523,0.58]	chr16	646391	671	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	4.96714	5.628385	6.28963	0.0108948	0.00618741	0.0706366	0.0519442
chr3	48087472	48087572	1765940	0	-	0.58	(0.523,0.58]	chr3	182011	712	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	2	221	2	4.04513	5.62835	7.21157	0.00107726	5.84273e-4	0.0197563	0.00974635
chr7	47362587	47362686	3587417	0	-	0.484848	(0.45,0.485]	chr7	346030	159	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	225	2	4.21419	5.627995	7.0418	0.00179449	4.11633e-4	0.0262815	0.0076383
chr14	104891993	104892089	5926146	0	+	0.6875	(0.58,1]	chr14	579999	19	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	1	153	2	4.53348	5.62795	6.72242	0.00121317	3.41282e-4	0.0210863	0.00667174
chr11	70777657	70777757	5062058	0	-	0.43	(0.419,0.45]	chr11	492701	598	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	177	2	4.35858	5.62781	6.89704	0.0036542	0.00126891	0.0389784	0.0168159
chrX	96971403	96971503	7917623	0	+	0.41	(0.39,0.419]	chrX	829152	58	INTRON	INTRON	DIAPH2	ENSG00000147202.19	ENST00000373049.8:ENST00000324765.13	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.45224	5.6274999999999995	5.80276	0.032783	0.00233691	0.122593	0.0257208
chr9	134342827	134342927	4260851	0	+	0.6	(0.58,1]	chr9	406311	158	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	80	2	5.08534	5.627395	6.16945	0.00549379	0.00387582	0.0454065	0.0401256
chr8	34007455	34007555	3796137	0	+	0.36	(0.33,0.36]	chr8	365332	2	SS3_PROX	SS3_PROX:INTRON	ENSG00000253642	ENSG00000253642.6	ENST00000523063.5:ENST00000523336.2	lncRNA	lncRNA	lncRNA	lncRNA	0	77	2	5.50696	5.626945	5.74693	0.0181681	0.00418696	0.0921579	0.0379935
chr3	49780376	49780476	1773983	0	-	0.37	(0.36,0.39]	chr3	183906	316	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	78	2	5.45303	5.626545	5.80006	0.0191255	0.00525731	0.0952349	0.044445
chr17	78815635	78815733	6979620	0	-	0.326531	(0.29,0.33]	chr17	712698	7	INTRON	INTRON	USP36	ENSG00000055483.20	ENST00000589225.5:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10:ENST00000588086.6:ENST00000588467.5:ENST00000586066.3:ENST00000590312.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	77	2	5.22448	5.626525	6.02857	0.0331252	9.04417e-4	0.123313	0.0132704
chr3	78934709	78934809	1836851	0	-	0.36	(0.33,0.36]	chr3	188602	1875	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	1	205	2	4.11167	5.626425	7.14118	0.00839754	5.34039e-5	0.0616197	0.00172447
chr18	76967515	76967614	7096873	0	+	0.464646	(0.45,0.485]	chr18	722760	63	INTRON	INTRON	ZNF236	ENSG00000130856.17	ENST00000320610.14:ENST00000543926.6:ENST00000253159.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	85	2	4.83755	5.62623	6.41491	0.06646	0.00034885200000000003	0.162385	0.00674746
chr9	7083643	7083743	4118236	0	+	0.47	(0.45,0.485]	chr9	391979	65	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000381306.7:ENST00000381309.8:ENST00000428870.6:ENST00000420847.2:ENST00000495890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	76	2	5.60298	5.626099999999999	5.64922	0.020599	0.00292492	0.0982852	0.029882
chr1	59526133	59526233	140398	0	+	0.38	(0.36,0.39]	chr1	16851	133	INTRON	INTRON	FGGY	ENSG00000172456.18	ENST00000634606.1:ENST00000474476.5:ENST00000371218.8:ENST00000495718.5:ENST00000430447.5:ENST00000634364.1:ENST00000303721.12:ENST00000635297.1:ENST00000634399.1:ENST00000424725.2:ENST00000635156.1:ENST00000371212.5:ENST00000475949.5:ENST00000485720.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	79	2	5.36211	5.625865	5.88962	0.0166261	0.00643924	0.0884836	0.0503748
chr6	169651137	169651234	3304375	0	-	0.701031	(0.58,1]	chr6	319869	15	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	73	2	5.54978	5.625845	5.70191	0.00964351	0.00165911	0.0659937	0.0202545
chr22	48754530	48754629	7751815	0	+	0.545455	(0.523,0.58]	chr22	812294	27	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000336769.9	protein_coding	protein_coding	protein_coding	protein_coding	0	90	2	4.83424	5.6257850000000005	6.41733	0.0144272	0.00490887	0.0833845	0.0457614
chr2	175085555	175085655	1321582	0	-	0.4	(0.39,0.419]	chr2	141130	44	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000435004.6:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000478905.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	258	2	3.46459	5.62575	7.78691	0.00377182	5.98107e-4	0.0353672	0.0143535
chr1	43771683	43771783	108973	0	+	0.38	(0.36,0.39]	chr1	13504	4	SS3_PROX	SS3_PROX:INTRON	ST3GAL3	ENSG00000126091.21	ENST00000646096.1:ENST00000532911.6:ENST00000643597.1:ENST00000643886.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000646109.1:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000479383.6:ENST00000647482.1:ENST00000645394.1:ENST00000647128.1:ENST00000484868.2:ENST00000461066.6:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1:ENST00000642194.1:ENST00000372368.7:ENST00000646686.1:ENST00000372366.6:ENST00000361812.9:ENST00000469715.6:ENST00000372369.5:ENST00000372367.5:ENST00000372365.5:ENST00000528371.5:ENST00000533212.5:ENST00000530581.5:ENST00000531816.1:ENST00000531993.6:ENST00000490541.6:ENST00000372362.6:ENST00000531451.5:ENST00000646416.1:ENST00000645117.1:ENST00000533933.6:ENST00000332628.11:ENST00000643813.1:ENST00000644922.1:ENST00000644287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	77	2	5.4139	5.6256900000000005	5.83748	0.0340874	0.00213426	0.125059	0.0240825
chr12	120998580	120998673	5341124	0	+	0.408602	(0.39,0.419]	chr12	521576	4	INTRON	INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000560968.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	211	2	4.23538	5.625335	7.01529	0.00761478	9.4123e-5	0.0580257	0.00261888
chr22	50682644	50682741	7754996	0	+	0.556701	(0.523,0.58]	chr22	812716	29	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	76	2	5.49322	5.62532	5.75742	0.0155135	0.00324246	0.0849828	0.0319521
chr2	73267276	73267371	1190601	0	-	0.442105	(0.419,0.45]	chr2	129026	2	INTRON	INTRON	FBXO41	ENSG00000163013.12	ENST00000295133.9:ENST00000520530.3:ENST00000521871.5	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.39934	5.62527	5.8512	0.0201381	0.00646489	0.0973365	0.0503748
chr10	79204568	79204667	4533404	0	+	0.484848	(0.45,0.485]	chr10	432445	25	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.23735	5.625205	6.01306	0.0113949	0.00687715	0.0723462	0.0526888
chr18	76480502	76480602	7179928	0	-	0.46	(0.45,0.485]	chr18	730094	170	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7:ENST00000532857.1	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.23735	5.625205	6.01306	0.0113949	0.00687715	0.0723462	0.0526888
chr2	55022691	55022791	1148254	0	-	0.48	(0.45,0.485]	chr2	125466	83	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	1	203	2	4.13769	5.6250350000000005	7.11238	0.00783394	4.5955e-5	0.0592199	0.00154731
chr2	239079795	239079895	1389468	0	-	0.45	(0.419,0.45]	chr2	148587	105	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000494800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	83	2	4.98767	5.62501	6.26235	0.0669167	8.27298e-4	0.16272	0.0124589
chr10	72780468	72780568	4507140	0	+	0.41	(0.39,0.419]	chr10	431210	194	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5:ENST00000604152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	173	2	4.61076	5.62467	6.63858	0.00489861	6.02787e-4	0.0457614	0.00998478
chr2	127496448	127496548	1266279	0	-	0.44	(0.419,0.45]	chr2	136446	3	SS3_PROX	SS3_PROX:INTRON	IWS1	ENSG00000163166.15	ENST00000295321.9	protein_coding	protein_coding	protein_coding	protein_coding	2	489	2	5.01262	5.624505	6.23639	0.00210918	5.97451e-6	0.028892	3.5765e-4
chr10	80187544	80187644	4721246	0	-	0.53	(0.523,0.58]	chr10	450571	57	INTRON	INTRON	ANXA11	ENSG00000122359.18	ENST00000372231.7:ENST00000438331.5:ENST00000422982.8:ENST00000463657.1:ENST00000474545.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	80	2	5.20104	5.62448	6.04792	0.00948306	0.00648051	0.0656057	0.0503748
chr21	33242774	33242874	7609198	0	+	0.55	(0.523,0.58]	chr21	794620	4	INTRON	INTRON	IFNAR2	ENSG00000159110.21	ENST00000683941.1:ENST00000382264.7:ENST00000342136.9:ENST00000404220.7:ENST00000420068.1:ENST00000342101.7:ENST00000382238.6:ENST00000413881.5:ENST00000443073.5:ENST00000447980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	80	2	5.20104	5.62448	6.04792	0.00948306	0.00648051	0.0656057	0.0503748
chr22	47123801	47123901	7748637	0	+	0.55	(0.523,0.58]	chr22	812256	118	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	80	2	5.20104	5.62448	6.04792	0.00948306	0.00648051	0.0656057	0.0503748
chr11	96244695	96244795	5112583	0	-	0.48	(0.45,0.485]	chr11	496566	1508	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	3	645	2	5.31464	5.62432	5.934	3.32948e-4	8.77289e-6	0.0104037	4.67292e-4
chr13	113537666	113537765	5658658	0	+	0.525253	(0.523,0.58]	chr13	555722	25	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	75	2	5.51247	5.624280000000001	5.73609	0.0230387	0.0017613	0.102982	0.0211077
chr22	50679428	50679528	7754963	0	+	0.57	(0.523,0.58]	chr22	812714	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	75	2	5.51247	5.624280000000001	5.73609	0.0230387	0.0017613	0.102982	0.0211077
chr1	119716017	119716117	223953	0	+	0.55	(0.523,0.58]	chr1	24615	1	SS5_PROX	SS5_PROX:INTRON	PHGDH	ENSG00000092621.13	ENST00000641597.1:ENST00000493622.5:ENST00000641720.1:ENST00000641213.1:ENST00000641947.1:ENST00000642041.1:ENST00000641074.1:ENST00000496756.2:ENST00000641115.1:ENST00000642021.1:ENST00000641491.1:ENST00000641023.2:ENST00000369409.9:ENST00000641573.1:ENST00000641513.1:ENST00000641375.1:ENST00000641891.1:ENST00000641570.1:ENST00000641587.1:ENST00000641371.1:ENST00000462324.2:ENST00000641272.1:ENST00000641247.1:ENST00000641756.1:ENST00000641711.1:ENST00000641927.1:ENST00000641314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	75	2	5.55012	5.62423	5.69834	0.0217068	0.00194036	0.100615	0.0225083
chr11	118622038	118622135	4948413	0	+	0.525773	(0.523,0.58]	chr11	477774	1	INTRON	INTRON	PHLDB1	ENSG00000019144.20	ENST00000361417.6:ENST00000530994.5:ENST00000600882.6:ENST00000528594.5:ENST00000621027.4:ENST00000356063.9:ENST00000532639.3:ENST00000527259.5:ENST00000526374.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	75	2	5.55012	5.62423	5.69834	0.0217068	0.00194036	0.100615	0.0225083
chr2	9487746	9487846	715768	0	+	0.55	(0.523,0.58]	chr2	83684	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IAH1	ENSG00000134330.19	ENST00000482918.5:ENST00000470914.5:ENST00000492223.5:ENST00000497473.6:ENST00000481367.5:ENST00000351760.11:ENST00000481688.1:ENST00000489468.5:ENST00000487850.5:ENST00000484826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	75	2	5.55012	5.62423	5.69834	0.0217068	0.00194036	0.100615	0.0225083
chr2	235503841	235503941	1062634	0	+	0.5	(0.485,0.523]	chr2	115651	86	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	170	2	4.22394	5.624015	7.02409	0.00154346	0.00129102	0.02427	0.0170457
chr10	18554069	18554169	4642269	0	-	0.42	(0.419,0.45]	chr10	443321	17	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	5.25615	5.623975	5.9918	0.0162379	0.00879729	0.0873195	0.0615125
chr8	143323498	143323598	4095563	0	-	0.62	(0.58,1]	chr8	389126	1	SS5_PROX	SS5_PROX:INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	154	2	4.91344	5.623905	6.33437	0.00276493	1.00604e-4	0.0332418	0.00275314
chr11	70811168	70811268	5062395	0	-	0.52	(0.485,0.523]	chr11	492713	36	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	76	2	5.48966	5.623749999999999	5.75784	0.0154142	0.0033837199999999998	0.0849828	0.0328791
chr15	40092388	40092487	6235077	0	-	0.50505	(0.485,0.523]	chr15	613027	1	INTRON	INTRON	BMF	ENSG00000104081.14	ENST00000354670.9:ENST00000397573.5:ENST00000561360.5:ENST00000561282.5:ENST00000558774.5:ENST00000431415.3:ENST00000559701.5	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.48966	5.623749999999999	5.75784	0.0154142	0.0033837199999999998	0.0849828	0.0328791
chr13	113058795	113058895	5656225	0	+	0.58	(0.523,0.58]	chr13	555189	40	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	2	438	2	5.52445	5.6237200000000005	5.72299	4.64821e-4	1.34452e-5	0.0124438	6.3536e-4
chr21	34993748	34993848	7656889	0	-	0.51	(0.485,0.523]	chr21	801067	1004	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000482318.5:ENST00000455571.5:ENST00000475045.6:ENST00000416754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	84	2	5.02573	5.623715000000001	6.2217	0.00985879	0.00693912	0.0664239	0.0553898
chr16	85588730	85588830	6518960	0	+	0.64	(0.58,1]	chr16	646396	320	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	1	156	2	4.33402	5.62369	6.91336	7.98131e-4	6.31529e-4	0.0167692	0.0102754
chr20	31794748	31794848	7454092	0	+	0.43	(0.419,0.45]	chr20	775879	2	SS5_PROX	SS5_PROX:INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.48746	5.6236049999999995	5.75975	0.0231013	0.00532156	0.102982	0.0446153
chr20	38426860	38426950	7561094	0	-	0.533333	(0.523,0.58]	chr20	789769	5	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000671309.1:ENST00000669405.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	5	345	2	3.94442	5.62351	7.3026	8.98889e-4	1.89954e-4	0.0178386	0.0043642
chr2	32532101	32532152	749591	0	+	0.392157	(0.39,0.419]	chr2	87499	2	PRIMIRNA	PRIMIRNA:INTRON	BIRC6:MIR558	ENSG00000115760.15:ENSG00000207653.1	ENST00000421745.7:ENST00000471232.5:ENST00000384920.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	1	212	2	4.30823	5.62348	6.93873	0.00670049	1.16947e-4	0.0541591	0.00308693
chr14	94307782	94307879	6046250	0	-	0.453608	(0.45,0.485]	chr14	593049	12	INTRON	INTRON	SERPINA6	ENSG00000170099.6	ENST00000341584.4:ENST00000555056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	79	2	5.28846	5.62345	5.95844	0.0124835	0.00612862	0.0761905	0.0489549
chr16	4840105	4840205	6544786	0	-	0.46	(0.45,0.485]	chr16	651184	68	INTRON	INTRON	GLYR1	ENSG00000140632.17	ENST00000321919.14:ENST00000436648.9:ENST00000588732.5:ENST00000589389.5:ENST00000591451.5:ENST00000588297.5:ENST00000587875.1:ENST00000591159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	76	2	5.38503	5.623045	5.86106	0.0308908	0.00153611	0.119556	0.0191553
chr9	93513468	93513568	4183113	0	+	0.46	(0.45,0.485]	chr9	397626	142	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000375389.7:ENST00000446420.2	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.38503	5.623045	5.86106	0.0308908	0.00153611	0.119556	0.0191553
chr22	46291143	46291236	7743262	0	+	0.55914	(0.523,0.58]	chr22	811892	9	INTRON	INTRON	TTC38	ENSG00000075234.17	ENST00000381031.8:ENST00000451998.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	81	2	5.14602	5.622815	6.09961	0.00866655	0.00734367	0.0623824	0.0550721
chr1	149490905	149490994	238411	0	+	0.483146	(0.45,0.485]	chr1	26503	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF19	ENSG00000271383.8	ENST00000651566.2:ENST00000611931.4:ENST00000612881.4:ENST00000369227.7	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.56203	5.622665	5.6833	0.0195193	0.00322991	0.0955413	0.0319521
chr2	3287117	3287217	1080978	0	-	0.5	(0.485,0.523]	chr2	117633	44	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	203	2	3.83652	5.62237	7.40822	0.0123744	1.43934e-5	0.0759278	6.61734e-4
chr6	24302843	24302943	3109777	0	-	0.47	(0.45,0.485]	chr6	301440	4	INTRON	INTRON	DCDC2	ENSG00000146038.12	ENST00000378454.8	protein_coding	protein_coding	protein_coding	protein_coding	0	100	2	4.59225	5.622165	6.65208	0.0259502	0.00371059	0.116361	0.039096
chr8	127874829	127874928	3918595	0	+	0.565657	(0.523,0.58]	chr8	374193	144	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000521122.2:ENST00000520913.2:ENST00000519481.6:ENST00000651568.1:ENST00000669082.1:ENST00000665166.1:ENST00000656948.1:ENST00000671088.1:ENST00000664924.1:ENST00000670204.1:ENST00000652695.1	lncRNA	lncRNA	lncRNA	lncRNA	3	263	2	3.88746	5.622085	7.35671	8.06717e-4	4.71991e-4	0.0168786	0.00837407
chr10	103811249	103811349	4758217	0	-	0.47	(0.45,0.485]	chr10	454819	95	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.43172	5.62191	5.8121	0.0158765	0.00440365	0.0859576	0.0393688
chr1	168179876	168179974	268582	0	+	0.530612	(0.523,0.58]	chr1	31574	3	INTRON	INTRON	TIPRL	ENSG00000143155.13	ENST00000367833.7:ENST00000367830.3	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.30515	5.621895	5.93864	0.0114442	0.00509102	0.0723462	0.0433513
chr16	953230	953319	6531565	0	-	0.573034	(0.523,0.58]	chr16	648705	2	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1:ENST00000566609.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	78	2	5.30515	5.621895	5.93864	0.0114442	0.00509102	0.0723462	0.0433513
chr16	85434017	85434117	6517411	0	+	0.55	(0.523,0.58]	chr16	646391	747	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.30515	5.621895	5.93864	0.0114442	0.00509102	0.0723462	0.0433513
chr19	309616	309712	7302969	0	-	0.552083	(0.523,0.58]	chr19	752391	3	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.30515	5.621895	5.93864	0.0114442	0.00509102	0.0723462	0.0433513
chr22	48701941	48702041	7751287	0	+	0.63	(0.58,1]	chr22	812283	82	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	93	2	4.66416	5.621815	6.57947	0.0144381	0.00165065	0.0833845	0.0250898
chr17	643792	643892	6823614	0	-	0.51	(0.485,0.523]	chr17	689804	106	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000680944.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000681830.1:ENST00000679959.1:ENST00000680114.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000570650.2:ENST00000679680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	75	2	5.47425	5.62177	5.76929	0.0243396	0.00167976	0.106588	0.0203806
chr4	140737348	140737448	2330001	0	-	0.52	(0.485,0.523]	chr4	234026	354	INTRON	INTRON	TBC1D9	ENSG00000109436.8	ENST00000442267.3	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.47425	5.62177	5.76929	0.0243396	0.00167976	0.106588	0.0203806
chr3	65419736	65419836	1809647	0	-	0.47	(0.45,0.485]	chr3	187193	179	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5	protein_coding	protein_coding	protein_coding	protein_coding	1	167	2	4.54047	5.62164	6.70281	0.00338129	5.92094e-4	0.0371948	0.00985627
chr11	121479242	121479342	4953925	0	+	0.52	(0.485,0.523]	chr11	478664	6	INTRON	INTRON	SORL1	ENSG00000137642.13	ENST00000260197.12:ENST00000532451.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	81	2	5.14248	5.6212599999999995	6.10004	0.00860355	0.00761903	0.0623467	0.0561937
chr9	120688065	120688165	4386644	0	-	0.42	(0.419,0.45]	chr9	418511	281	INTRON	INTRON	MEGF9	ENSG00000106780.9	ENST00000373930.4	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.4831	5.621230000000001	5.75936	0.0345118	0.00285253	0.126025	0.0294017
chr11	70802629	70802728	5062309	0	-	0.535354	(0.523,0.58]	chr11	492707	37	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5:ENST00000460048.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	75	2	5.61976	5.62117	5.62258	0.0193313	0.00236826	0.0954446	0.0259199
chr18	74514501	74514596	7088608	0	+	0.473684	(0.45,0.485]	chr18	722320	4	INTRON	INTRON	CNDP2	ENSG00000133313.15	ENST00000579847.5:ENST00000324262.9:ENST00000324301.12:ENST00000584581.5:ENST00000579624.1:ENST00000583695.1:ENST00000581600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	203	2	4.2327	5.62112	7.00954	0.0065939	6.25508e-5	0.0538851	0.00192791
chr5	148392917	148393017	2562858	0	+	0.42	(0.419,0.45]	chr5	254487	30	INTRON	INTRON	FBXO38	ENSG00000145868.17	ENST00000296701.10:ENST00000503613.5:ENST00000340253.10:ENST00000394370.7:ENST00000508326.5:ENST00000509411.5:ENST00000511080.5:ENST00000504971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	77	2	5.59315	5.621095	5.64904	0.029494	0.00368884	0.116079	0.0348088
chr16	14875690	14875774	6402502	0	+	0.392857	(0.39,0.419]	chr16	632480	3	SS5_PROX	SS5_PROX:INTRON	NOMO1	ENSG00000103512.16	ENST00000287667.12	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.37172	5.620995	5.87027	0.0367885	0.00198333	0.129052	0.0229039
chr1	17678081	17678181	54992	0	+	0.64	(0.58,1]	chr1	5603	131	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	77	2	5.20223	5.62058	6.03893	0.00503456	0.00411607	0.0464858	0.0374453
chr1	1031418	1031518	1029	0	+	0.63	(0.58,1]	chr1	166	86	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.25731	5.620265	5.98322	0.00562007	0.00358178	0.0493906	0.0342681
chr7	158910454	158910553	3523090	0	+	0.626263	(0.58,1]	chr7	340275	40	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	87	2	4.81862	5.6197	6.42078	0.0102696	0.00230938	0.0678072	0.0302623
chr17	29131182	29131282	6876474	0	-	0.57	(0.523,0.58]	chr17	697995	4	SS5_PROX	SS5_PROX:INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000590242.5:ENST00000528564.2:ENST00000528322.6:ENST00000585573.6:ENST00000533420.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	212	2	4.6757	5.6196649999999995	6.56363	0.0025819	1.79062e-4	0.0321738	0.00418549
chr12	26531650	26531750	5398540	0	-	0.41	(0.39,0.419]	chr12	528527	360	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	1	175	2	4.2918	5.61951	6.94722	0.00283905	0.00141198	0.033773	0.0180814
chrX	47219898	47219996	7877802	0	+	0.540816	(0.523,0.58]	chrX	825683	4	INTRON	INTRON	CDK16	ENSG00000102225.17	ENST00000517997.5:ENST00000517479.1:ENST00000457458.6:ENST00000522883.1:ENST00000520295.5:ENST00000357227.9:ENST00000519758.5:ENST00000520893.5:ENST00000517426.5:ENST00000522234.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	165	2	4.38556	5.619505	6.85345	0.00216679	8.02365e-4	0.0292299	0.0121806
chr17	18892660	18892759	6693450	0	+	0.373737	(0.36,0.39]	chr17	672000	24	INTRON	INTRON	PRPSAP2	ENSG00000141127.15	ENST00000610773.4:ENST00000432893.6:ENST00000492129.5:ENST00000419071.6:ENST00000487101.5:ENST00000536323.5:ENST00000412418.5:ENST00000268835.7:ENST00000395656.6:ENST00000455992.6:ENST00000422237.5:ENST00000542013.5:ENST00000574451.5:ENST00000575337.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	78	2	5.40829	5.619415	5.83054	0.0182399	0.00581205	0.0921579	0.0472624
chr3	184936535	184936635	1645793	0	+	0.42	(0.419,0.45]	chr3	173121	2	SS5_PROX	SS5_PROX:INTRON	VPS8	ENSG00000156931.16	ENST00000287546.8:ENST00000625842.3:ENST00000436792.6:ENST00000446204.6:ENST00000492449.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	77	2	5.44447	5.619400000000001	5.79433	0.0364384	0.00262626	0.128173	0.0278348
chr3	51609655	51609755	1471615	0	+	0.44	(0.419,0.45]	chr3	157885	187	INTRON	INTRON	RAD54L2	ENSG00000164080.14	ENST00000684192.1:ENST00000409535.6:ENST00000487093.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	77	2	5.61031	5.61918	5.62805	0.0280406	0.004032	0.113651	0.0371291
chr2	65401974	65402074	1171875	0	-	0.44	(0.419,0.45]	chr2	127582	214	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	2	257	2	3.49071	5.619155	7.7476	0.00372452	7.93848e-4	0.0350862	0.016765
chr11	70818563	70818663	5062469	0	-	0.55	(0.523,0.58]	chr11	492713	110	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	76	2	5.44845	5.618845	5.78924	0.0147166	0.00361636	0.0826843	0.0342681
chr3	47996750	47996849	1765029	0	-	0.353535	(0.33,0.36]	chr3	181993	90	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000633710.1:ENST00000434267.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.59003	5.618525	5.64702	0.0212683	0.00344516	0.0996805	0.0333853
chr20	18632883	18632983	7443761	0	+	0.46	(0.45,0.485]	chr20	774758	3	INTRON	INTRON	ENSG00000284776:DTD1	ENSG00000284776.1:ENSG00000125821.13	ENST00000618693.4:ENST00000647441.1:ENST00000377452.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	234	2	4.60198	5.618375	6.63477	0.00382972	1.30272e-4	0.0399078	0.00332553
chr2	77564743	77564843	1203678	0	-	0.55	(0.523,0.58]	chr2	130029	117	INTRON	INTRON	LRRTM4	ENSG00000176204.14	ENST00000456154.1:ENST00000491242.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	118	2	4.23973	5.61819	6.99665	0.0444247	0.00164293	0.153511	0.0250898
chr5	209349	209448	2607675	0	-	0.515152	(0.485,0.523]	chr5	259392	30	INTRON	INTRON	CCDC127	ENSG00000164366.4	ENST00000296824.4:ENST00000441693.2	protein_coding	protein_coding	protein_coding	protein_coding	1	164	2	4.49177	5.61811	6.74445	0.00264613	6.09927e-4	0.032596	0.0100466
chr17	66509568	66509668	6785501	0	+	0.42	(0.419,0.45]	chr17	684238	129	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	78	2	5.27868	5.618095	5.95751	0.0457732	0.0017735	0.142336	0.02121
chr6	89845271	89845370	2953591	0	+	0.424242	(0.419,0.45]	chr6	290725	40	INTRON	INTRON	CASP8AP2	ENSG00000118412.13	ENST00000552401.5:ENST00000419040.6:ENST00000547893.5:ENST00000237177.10:ENST00000551025.4:ENST00000548224.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	78	2	5.27868	5.618095	5.95751	0.0457732	0.0017735	0.142336	0.02121
chr6	2162731	2162831	3084509	0	-	0.49	(0.485,0.523]	chr6	299521	376	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5	protein_coding	protein_coding	protein_coding	protein_coding	2	270	2	3.72657	5.618045	7.50952	0.00685205	1.04342e-5	0.0550976	5.30224e-4
chr22	50680025	50680122	7754969	0	+	0.494845	(0.485,0.523]	chr22	812716	2	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	76	2	5.26375	5.617979999999999	5.97221	0.0335928	9.86421e-4	0.124319	0.0140716
chr6	34354369	34354469	3123452	0	-	0.49	(0.485,0.523]	chr6	304665	120	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.26375	5.617979999999999	5.97221	0.0335928	9.86421e-4	0.124319	0.0140716
chr17	43545414	43545514	6739019	0	+	0.72	(0.58,1]	chr17	678633	2	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	4	635	2	4.93849	5.617915	6.29734	1.68868e-4	7.86971e-7	0.00726907	8.98495e-5
chr10	131916790	131916890	4616184	0	+	0.54	(0.523,0.58]	chr10	441069	38	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	87	2	4.90222	5.617839999999999	6.33346	0.0125132	0.00571732	0.0765738	0.0498083
chr21	46639668	46639767	7634683	0	+	0.343434	(0.33,0.36]	chr21	798554	23	INTRON	INTRON	PRMT2	ENSG00000160310.19	ENST00000451211.6:ENST00000458387.6:ENST00000397638.6:ENST00000291705.11:ENST00000397637.5:ENST00000334494.8:ENST00000355680.8:ENST00000397628.5:ENST00000440086.5	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	5.22448	5.617665	6.01085	0.011821	0.00791583	0.0739406	0.057762
chr12	43983532	43983632	5208406	0	+	0.42	(0.419,0.45]	chr12	506272	388	INTRON	INTRON	TMEM117	ENSG00000139173.10	ENST00000266534.8:ENST00000551577.5:ENST00000546868.5:ENST00000550495.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	79	2	5.18804	5.61764	6.04724	0.051668	0.00142238	0.148503	0.0181715
chr15	40998997	40999097	6236600	0	-	0.31	(0.29,0.33]	chr15	613283	10	INTRON	INTRON	INO80	ENSG00000128908.18	ENST00000648947.1:ENST00000401393.7:ENST00000558357.6:ENST00000559995.2:ENST00000561244.1:ENST00000557849.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	75	2	5.40051	5.61764	5.83477	0.0252356	0.00150459	0.108065	0.0188758
chr5	95905429	95905528	2731304	0	-	0.373737	(0.36,0.39]	chr5	268236	40	INTRON	INTRON	ELL2	ENSG00000118985.16	ENST00000237853.9:ENST00000513343.1	protein_coding	protein_coding	protein_coding	protein_coding	2	232	2	3.98664	5.617605	7.24857	0.00159081	9.58939e-4	0.024604	0.013752
chr10	79224672	79224772	4533608	0	+	0.52	(0.485,0.523]	chr10	432457	80	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.44489	5.61728	5.78967	0.0146211	0.00377098	0.0826064	0.0353672
chr4	159295381	159295480	2159912	0	+	0.363636	(0.36,0.39]	chr4	218721	124	INTRON	INTRON	RAPGEF2	ENSG00000109756.10	ENST00000644474.1:ENST00000691494.1:ENST00000505478.5:ENST00000504604.5:ENST00000644902.1:ENST00000511336.5:ENST00000510510.5:ENST00000264431.8:ENST00000514565.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	77	2	5.33106	5.617255	5.90345	0.0383628	0.00181603	0.131324	0.0215865
chr12	132543022	132543121	5353046	0	+	0.656566	(0.58,1]	chr12	523670	147	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.51813	5.617205	5.71628	0.013519	0.00104668	0.0792526	0.0146403
chr6	159711130	159711230	3300577	0	-	0.49	(0.485,0.523]	chr6	319519	179	INTRON	INTRON	SOD2	ENSG00000112096.19	ENST00000546087.5:ENST00000545162.5:ENST00000535561.5:ENST00000537657.5:ENST00000401980.3	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.17012	5.617	6.06388	0.038581	7.70737e-4	0.131324	0.0118331
chr7	1009149	1009249	3526314	0	-	0.68	(0.58,1]	chr7	340566	82	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	72	2	5.55681	5.6166149999999995	5.67642	0.0126042	0.00117039	0.0761905	0.0157899
chr4	102688174	102688274	2294084	0	-	0.51	(0.485,0.523]	chr4	230705	49	INTRON	INTRON	MANBA	ENSG00000109323.11	ENST00000644159.1:ENST00000647097.2:ENST00000514430.5:ENST00000646727.1:ENST00000644545.1:ENST00000646311.1:ENST00000647129.1:ENST00000642252.1:ENST00000645558.1:ENST00000645348.1:ENST00000505239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	75	2	5.57523	5.61657	5.65791	0.0181582	0.00274261	0.0921579	0.028553
chr9	41359252	41359352	4155391	0	+	0.59	(0.58,1]	chr9	395188	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000288891	ENSG00000288891.1	ENST00000692789.1:ENST00000686353.1	lncRNA	lncRNA	lncRNA	lncRNA	1	184	2	4.53036	5.616425	6.70249	0.00203497	5.11463e-5	0.0283511	0.00167326
chr1	17664246	17664346	54853	0	+	0.64	(0.58,1]	chr1	5598	4	SS3_PROX	SS3_PROX:INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	157	2	4.26089	5.61633	6.97177	7.87512e-4	7.01049e-4	0.0156107	0.0120243
chr18	76480402	76480502	7179927	0	-	0.45	(0.419,0.45]	chr18	730094	169	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7:ENST00000532857.1	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.57051	5.616315	5.66212	0.0266819	0.00441471	0.111563	0.0393688
chr12	132952953	132953052	5542061	0	-	0.606061	(0.58,1]	chr12	547064	43	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	155	2	4.33402	5.6162	6.89838	8.25028e-4	6.31529e-4	0.0170688	0.0102754
chr1	43592801	43592901	107378	0	+	0.69	(0.58,1]	chr1	13239	2	SS5_PROX	SS5_PROX:INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	1	151	2	4.65262	5.616045	6.57947	0.00165065	2.34232e-4	0.0250898	0.00506154
chr9	87537671	87537771	4175826	0	+	0.48	(0.45,0.485]	chr9	397141	123	INTRON	INTRON	DAPK1	ENSG00000196730.13	ENST00000358077.9:ENST00000469640.6:ENST00000472284.5:ENST00000469067.5:ENST00000408954.8:ENST00000622514.4:ENST00000496522.5:ENST00000472344.1:ENST00000491893.5:ENST00000489291.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	178	2	5.11519	5.615825	6.11646	0.00956667	1.11073e-4	0.0658012	0.0029728
chr6	158343066	158343166	3061952	0	+	0.6	(0.58,1]	chr6	297592	284	INTRON	INTRON	ENSG00000274023:TULP4	ENSG00000274023.1:ENSG00000130338.13	ENST00000619713.1:ENST00000367097.8:ENST00000367094.6:ENST00000616856.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	1	151	2	4.69024	5.61582	6.5414	0.00179018	2.07711e-4	0.0262802	0.00464072
chr10	79441114	79441214	4720811	0	-	0.52	(0.485,0.523]	chr10	450462	80	INTRON	INTRON	ZCCHC24	ENSG00000165424.7	ENST00000372336.4:ENST00000372333.3	protein_coding	protein_coding	protein_coding	protein_coding	0	85	2	4.96361	5.61562	6.26763	0.0112713	0.00639185	0.071709	0.0529032
chrX	44899385	44899485	7871935	0	+	0.47	(0.45,0.485]	chrX	825082	250	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	224	2	4.2982	5.615449999999999	6.9327	0.00220534	3.22079e-4	0.0295736	0.00637349
chr19	36772424	36772524	7371316	0	-	0.58	(0.523,0.58]	chr19	764162	3	SS5_PROX	SS5_PROX:INTRON	ZNF850	ENSG00000267041.6	ENST00000589390.5:ENST00000614887.4:ENST00000591344.2	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	4.84569	5.61539	6.38509	0.0610722	3.00426e-4	0.158506	0.00607383
chr1	164752123	164752223	260663	0	+	0.41	(0.39,0.419]	chr1	30918	673	INTRON	INTRON	PBX1	ENSG00000185630.19	ENST00000420696.7:ENST00000340699.7:ENST00000627490.2:ENST00000559240.5:ENST00000367897.5:ENST00000559578.1:ENST00000560469.5:ENST00000496120.6:ENST00000468104.5:ENST00000560641.5:ENST00000482110.5:ENST00000558796.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	79	2	5.31385	5.615385	5.91692	0.0162442	0.0071966	0.0873195	0.0543014
chr12	16450814	16450914	5178596	0	+	0.41	(0.39,0.419]	chr12	504097	37	INTRON	INTRON	MGST1	ENSG00000008394.13	ENST00000539036.5:ENST00000538857.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	79	2	5.31385	5.615385	5.91692	0.0162442	0.0071966	0.0873195	0.0543014
chr9	112462565	112462664	4220080	0	+	0.414141	(0.39,0.419]	chr9	400293	26	INTRON	INTRON	HSDL2	ENSG00000119471.15	ENST00000398803.1:ENST00000398805.8	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.31385	5.615385	5.91692	0.0162442	0.0071966	0.0873195	0.0543014
chr5	138871951	138872051	2546948	0	+	0.44	(0.419,0.45]	chr5	252848	11	INTRON	INTRON	CTNNA1	ENSG00000044115.21	ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518825.5:ENST00000523275.5:ENST00000517534.5:ENST00000520400.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	222	2	4.5026	5.6152999999999995	6.728	0.00524811	2.41873e-4	0.0476984	0.00518926
chr17	55090771	55090871	6756270	0	+	0.41	(0.39,0.419]	chr17	681673	92	INTRON	INTRON	STXBP4	ENSG00000166263.13	ENST00000376352.6:ENST00000434978.6	protein_coding	protein_coding	protein_coding	protein_coding	1	173	2	4.36902	5.61519	6.86136	0.0033099	0.00115295	0.0368376	0.0157112
chr18	13263044	13263144	7023191	0	+	0.67	(0.58,1]	chr18	717514	437	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000590371.5:ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000590115.1:ENST00000677055.1:ENST00000399848.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	72	2	5.59447	5.61495	5.63543	0.0117666	0.00131165	0.0737098	0.0171898
chr1	156547272	156547372	602015	0	-	0.46	(0.45,0.485]	chr1	71124	24	INTRON	INTRON	IQGAP3	ENSG00000183856.11	ENST00000491900.1:ENST00000361170.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	77	2	5.20906	5.614875	6.02069	0.0399616	0.00101549	0.133954	0.0143256
chr9	133915263	133915363	4429553	0	-	0.53	(0.523,0.58]	chr9	423310	535	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	163	2	4.71267	5.614205	6.51574	0.00409625	3.11451e-4	0.0413652	0.00624487
chr10	131917389	131917489	4616190	0	+	0.53	(0.523,0.58]	chr10	441069	44	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	75	2	5.53665	5.61411	5.69157	0.0172851	0.00291382	0.0897247	0.0298557
chr10	59814551	59814651	4693916	0	-	0.46	(0.45,0.485]	chr10	447413	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CCDC6	ENSG00000108091.11	ENST00000263102.7	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.38553	5.6140550000000005	5.84258	0.0151085	0.00490471	0.0841543	0.0422077
chr15	60542210	60542309	6284941	0	-	0.454545	(0.45,0.485]	chr15	619503	100	INTRON	INTRON	RORA	ENSG00000069667.16	ENST00000335670.11:ENST00000261523.9:ENST00000309157.8:ENST00000449337.6:ENST00000551975.5:ENST00000560004.5:ENST00000559343.1:ENST00000558234.1:ENST00000557822.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	77	2	5.38553	5.6140550000000005	5.84258	0.0151085	0.00490471	0.0841543	0.0422077
chr4	913938	914029	2178760	0	-	0.725275	(0.58,1]	chr4	220688	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000512325.3:ENST00000510022.5:ENST00000511229.5:ENST00000511983.5:ENST00000507124.1:ENST00000628912.1:ENST00000513935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	73	2	5.45872	5.61403	5.76934	0.00849371	0.00211999	0.0617717	0.0239744
chr1	9295094	9295193	19605	0	+	0.464646	(0.45,0.485]	chr1	2205	1	INTRON	INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11:ENST00000450402.1	protein_coding	protein_coding	protein_coding	protein_coding	1	166	2	4.57535	5.613715	6.65208	0.00371059	5.36627e-4	0.039096	0.0091711
chr6	16760499	16760598	3104459	0	-	0.808081	(0.58,1]	chr6	300921	5	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000473388.6:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1:ENST00000467008.5:ENST00000498374.1:ENST00000492857.1:ENST00000479680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	364	2	3.17739	5.613569999999999	8.04975	8.8263e-4	5.75161e-5	0.0130007	0.00421737
chr1	85464142	85464242	520003	0	-	0.46	(0.45,0.485]	chr1	61355	290	INTRON	INTRON	DDAH1	ENSG00000153904.21	ENST00000426972.8:ENST00000284031.13	protein_coding	protein_coding	protein_coding	protein_coding	1	202	2	4.2327	5.613465	6.99423	0.0065939	6.5472e-5	0.0538851	0.00199814
chr9	127549159	127549259	4411995	0	-	0.48	(0.45,0.485]	chr9	420485	170	INTRON	INTRON	NIBAN2	ENSG00000136830.12	ENST00000373314.7:ENST00000373312.4:ENST00000478917.1:ENST00000468379.1:ENST00000484348.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	76	2	5.29973	5.613390000000001	5.92705	0.035042	0.00129636	0.12704	0.0170746
chr2	74155384	74155483	1191246	0	-	0.333333	(0.33,0.36]	chr2	129170	30	UTR3	UTR3:EXON_MRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.15931	5.6130949999999995	6.06688	0.043896	0.00105663	0.139792	0.0147548
chr1	30933942	30934042	434613	0	-	0.52	(0.485,0.523]	chr1	51446	2	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000530669.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	75	2	5.35167	5.61299	5.87431	0.0294163	0.00127835	0.116079	0.0168904
chr8	38456157	38456256	3968185	0	-	0.565657	(0.523,0.58]	chr8	379315	123	INTRON	INTRON	FGFR1	ENSG00000077782.22	ENST00000649678.1:ENST00000397091.9:ENST00000619564.3:ENST00000447712.7:ENST00000341462.9:ENST00000532791.5:ENST00000674380.1:ENST00000674189.1:ENST00000683765.1:ENST00000425967.8:ENST00000683948.1:ENST00000397113.6:ENST00000356207.9:ENST00000335922.9:ENST00000683815.1:ENST00000684654.1:ENST00000326324.10:ENST00000674474.1:ENST00000397103.5:ENST00000397108.8:ENST00000487647.5:ENST00000530701.1:ENST00000470826.5:ENST00000683276.1:ENST00000683795.1:ENST00000496296.5:ENST00000527203.5:ENST00000533668.5:ENST00000525001.5:ENST00000526742.5:ENST00000529552.5:ENST00000484370.5:ENST00000530568.5:ENST00000434187.5:ENST00000397090.4:ENST00000413133.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	91	2	4.58058	5.612915	6.64525	0.0860403	1.40789e-4	0.181766	0.00351181
chr2	74475926	74476026	1193460	0	-	0.38	(0.36,0.39]	chr2	129669	2	SS3_PROX	SS3_PROX:INTRON	CCDC142	ENSG00000135637.14	ENST00000454193.5:ENST00000393965.8:ENST00000290418.4:ENST00000497232.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	76	2	5.52987	5.612805	5.69574	0.0287883	0.00299965	0.115991	0.030427
chr18	6118008	6118108	7110894	0	-	0.52	(0.485,0.523]	chr18	723846	241	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000400105.6:ENST00000317931.12:ENST00000400104.7	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.53308	5.61254	5.692	0.0171772	0.00304306	0.0895975	0.0306636
chr1	61980378	61980478	152348	0	+	0.34	(0.33,0.36]	chr1	17428	276	INTRON	INTRON	PATJ	ENSG00000132849.22	ENST00000371158.6:ENST00000484562.5:ENST00000459752.5:ENST00000635214.1:ENST00000642238.2:ENST00000635023.1:ENST00000484937.5:ENST00000494842.2:ENST00000490547.2:ENST00000646453.1:ENST00000635137.1:ENST00000307297.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	78	2	5.32491	5.612185	5.89946	0.0142052	0.00634179	0.0816536	0.0501889
chr20	34565853	34565953	7547086	0	-	0.52	(0.485,0.523]	chr20	787854	45	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	2	430	2	5.11317	5.612115	6.11106	0.00107284	3.99508e-6	0.0197319	2.70439e-4
chr5	123526846	123526946	2523621	0	+	0.39	(0.36,0.39]	chr5	250487	139	INTRON	INTRON	CSNK1G3	ENSG00000151292.18	ENST00000345990.9:ENST00000508708.1:ENST00000512718.7:ENST00000511130.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	78	2	5.19713	5.61205	6.02697	0.0462258	0.00133548	0.143138	0.0173572
chr1	111728031	111728131	561679	0	-	0.46	(0.45,0.485]	chr1	64443	2	SS3_PROX	SS3_PROX:INTRON	INKA2	ENSG00000197852.12	ENST00000527570.1:ENST00000357260.6:ENST00000534365.1:ENST00000444059.2:ENST00000527621.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	80	2	5.18438	5.611995	6.03961	0.0108974	0.00773818	0.0707085	0.0568726
chr16	11034851	11034950	6386218	0	+	0.464646	(0.45,0.485]	chr16	631698	96	INTRON	INTRON	CLEC16A	ENSG00000038532.16	ENST00000409790.6:ENST00000409552.4:ENST00000463896.5:ENST00000476025.5:ENST00000465491.5:ENST00000646363.1:ENST00000487189.5:ENST00000463459.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	75	2	5.50422	5.611750000000001	5.71928	0.0257993	0.00219685	0.109555	0.0245167
chr14	91497169	91497269	6039773	0	-	0.41	(0.39,0.419]	chr14	592261	60	INTRON	INTRON	PPP4R3A	ENSG00000100796.18	ENST00000554943.6:ENST00000554684.5:ENST00000555462.5:ENST00000554308.5:ENST00000554390.5:ENST00000555029.5:ENST00000557018.5:ENST00000554511.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	0	76	2	5.49088	5.611409999999999	5.73194	0.0309972	0.00276973	0.119758	0.0286873
chr16	81680521	81680621	6510116	0	+	0.67	(0.58,1]	chr16	645979	15	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	1	181	2	4.42424	5.611345	6.79845	0.00256182	3.72743e-5	0.0320805	0.00131851
chr8	17645440	17645537	3944827	0	-	0.484536	(0.45,0.485]	chr8	376834	18	UTR3	UTR3:EXON_MRNA	MTUS1	ENSG00000129422.15	ENST00000381869.5:ENST00000544260.3:ENST00000520196.5:ENST00000297488.10:ENST00000517413.5:ENST00000693296.1:ENST00000262102.10:ENST00000381861.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	225	2	3.92807	5.6111450000000005	7.29422	0.00110556	9.3201e-4	0.0200331	0.0135546
chr13	97340122	97340222	5631985	0	+	0.4	(0.39,0.419]	chr13	553188	53	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	78	2	5.19579	5.611095	6.0264	0.0469937	0.00134695	0.143232	0.0174765
chr13	33214299	33214399	5684740	0	-	0.43	(0.419,0.45]	chr13	558196	84	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	78	2	5.23407	5.61106	5.98805	0.0486006	0.00164584	0.145074	0.0202325
chr16	571834	571930	6368133	0	+	0.427083	(0.419,0.45]	chr16	627950	7	INTRON	INTRON	PIGQ	ENSG00000007541.17	ENST00000293874.2:ENST00000409527.6:ENST00000321878.10:ENST00000439574.1:ENST00000422307.6:ENST00000636657.1:ENST00000026218.9:ENST00000470411.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	78	2	5.23407	5.61106	5.98805	0.0486006	0.00164584	0.145074	0.0202325
chr6	120646789	120646889	2994576	0	+	0.39	(0.36,0.39]	chr6	293187	1838	INTRON	INTRON	ENSG00000286540	ENSG00000286540.1	ENST00000657887.1	lncRNA	lncRNA	lncRNA	lncRNA	0	77	2	5.45303	5.61098	5.76893	0.0200694	0.00525731	0.0971995	0.044445
chr7	29383800	29383900	3336191	0	+	0.38	(0.36,0.39]	chr7	322892	26	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5:ENST00000222792.11:ENST00000409350.5:ENST00000409964.6:ENST00000409922.5:ENST00000412536.5:ENST00000478128.6:ENST00000482820.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	76	2	5.4536	5.610975	5.76835	0.0321864	0.00252253	0.121593	0.0270357
chr17	14027275	14027375	6858913	0	-	0.43	(0.419,0.45]	chr17	694957	1282	INTRON	INTRON	COX10-DT	ENSG00000236088.11	ENST00000582752.7:ENST00000690301.1:ENST00000662986.1:ENST00000686809.1:ENST00000686296.1:ENST00000602539.2:ENST00000602743.1	lncRNA	lncRNA	lncRNA	lncRNA	0	86	2	4.81671	5.61083	6.40495	0.08258	5.72149e-4	0.179396	0.00960229
chr18	62917384	62917483	7082072	0	+	0.373737	(0.36,0.39]	chr18	722036	20	INTRON	INTRON	PHLPP1	ENSG00000081913.14	ENST00000262719.10:ENST00000591386.1:ENST00000591106.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	76	2	5.6023	5.6107949999999995	5.61929	0.0258522	0.00359045	0.109555	0.0342681
chr17	75805856	75805955	6800351	0	+	0.313131	(0.29,0.33]	chr17	686178	118	INTRON	INTRON	UNK	ENSG00000132478.10	ENST00000589666.6:ENST00000592629.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	80	2	4.96914	5.610635	6.25213	0.0481918	4.92548e-4	0.144601	0.00865377
chr13	113059593	113059693	5656233	0	+	0.56	(0.523,0.58]	chr13	555189	48	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.25403	5.610385	5.96674	0.0109075	0.00573579	0.0707085	0.0467736
chr17	81207935	81208033	6983388	0	-	0.540816	(0.523,0.58]	chr17	713387	3	INTRON	INTRON	CEP131	ENSG00000141577.14	ENST00000374782.7:ENST00000269392.8:ENST00000450824.7:ENST00000575907.5	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.25403	5.610385	5.96674	0.0109075	0.00573579	0.0707085	0.0467736
chr4	6300056	6300156	2010602	0	+	0.58	(0.523,0.58]	chr4	205141	45	INTRON	INTRON	WFS1	ENSG00000109501.15	ENST00000673991.1:ENST00000503569.5:ENST00000226760.5:ENST00000682275.1:ENST00000506362.2:ENST00000684087.1:ENST00000683395.1:ENST00000673642.1:ENST00000507765.1:ENST00000513395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	78	2	5.25403	5.610385	5.96674	0.0109075	0.00573579	0.0707085	0.0467736
chr18	13444850	13444948	7025024	0	+	0.479592	(0.45,0.485]	chr18	717583	6	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000610087.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	81	2	5.12938	5.610340000000001	6.0913	0.00998516	0.00873194	0.0673647	0.0612699
chr2	73283355	73283454	1190771	0	-	0.545455	(0.523,0.58]	chr2	129050	99	INTRON	INTRON	FBXO41	ENSG00000163013.12	ENST00000520530.3:ENST00000521871.5:ENST00000520186.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	80	2	5.14602	5.61001	6.074	0.00906277	0.00734367	0.0637469	0.0550721
chr3	149540115	149540215	1940015	0	-	0.43	(0.419,0.45]	chr3	197468	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	WWTR1	ENSG00000018408.15	ENST00000465804.5:ENST00000360632.8:ENST00000467467.5:ENST00000471586.5:ENST00000494754.1:ENST00000472417.1:ENST00000485244.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	184	2	4.02619	5.6098099999999995	7.19343	0.00294478	0.00217056	0.0300172	0.029243
chr18	76423560	76423660	7179355	0	-	0.55	(0.523,0.58]	chr18	730080	429	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	1	162	2	4.57635	5.609735	6.64312	0.00323048	4.64368e-4	0.0362983	0.00826853
chr1	31580113	31580213	81048	0	+	0.53	(0.523,0.58]	chr1	9289	3	SS5_PROX	SS5_PROX:INTRON	LINC01226:TINAGL1	ENSG00000284543.1:ENSG00000142910.16	ENST00000639839.1:ENST00000640226.1:ENST00000457433.6:ENST00000271064.12:ENST00000461030.5:ENST00000478398.5:ENST00000481165.5:ENST00000537531.2:ENST00000468635.5:ENST00000498429.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	101	2	4.5249	5.609674999999999	6.69445	0.0266135	0.00293287	0.118113	0.0343709
chr22	50680122	50680219	7754970	0	+	0.525773	(0.523,0.58]	chr22	812716	3	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	75	2	5.30795	5.60961	5.91127	0.0315825	0.00111349	0.120781	0.0152496
chr22	42956486	42956585	7823696	0	-	0.333333	(0.33,0.36]	chr22	820622	96	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000407585.5:ENST00000402229.5:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5:ENST00000453079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	175	2	4.96162	5.609135	6.25665	0.00779158	2.01376e-4	0.0590197	0.00456537
chr10	79292656	79292756	4534294	0	+	0.54	(0.523,0.58]	chr10	432485	3	SS5_PROX	SS5_PROX:INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10:ENST00000478357.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	75	2	5.49322	5.609045	5.72487	0.0163679	0.00324246	0.0875379	0.0319521
chr11	70814866	70814966	5062432	0	-	0.57	(0.523,0.58]	chr11	492713	73	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	75	2	5.49322	5.609045	5.72487	0.0163679	0.00324246	0.0875379	0.0319521
chr14	74114101	74114198	5883424	0	+	0.484536	(0.45,0.485]	chr14	574505	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	LIN52	ENSG00000205659.12	ENST00000555028.7:ENST00000554938.2:ENST00000553404.5:ENST00000554076.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	75	2	5.42587	5.60889	5.79191	0.0290571	0.00183113	0.116079	0.0216571
chr22	29831744	29831844	7784875	0	-	0.47	(0.45,0.485]	chr22	816451	1	SS5_PROX	SS5_PROX:INTRON	ASCC2	ENSG00000100325.15	ENST00000542393.5:ENST00000307790.8:ENST00000458594.5:ENST00000397771.6:ENST00000449900.6:ENST00000431535.5:ENST00000495967.5:ENST00000412689.5:ENST00000465667.6:ENST00000495681.5:ENST00000462454.1:ENST00000453160.5:ENST00000460313.1:ENST00000454854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	75	2	5.42587	5.60889	5.79191	0.0290571	0.00183113	0.116079	0.0216571
chr4	884488	884586	2178447	0	-	0.693878	(0.58,1]	chr4	220624	2	SS3_PROX	SS3_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.35214	5.608835	5.86553	0.0181452	6.8352e-4	0.0921579	0.0108717
chr2	232072709	232072809	1052182	0	+	0.5	(0.485,0.523]	chr2	114547	423	INTRON	INTRON	DIS3L2	ENSG00000144535.20	ENST00000273009.10:ENST00000390005.9:ENST00000409401.7:ENST00000445090.5:ENST00000441279.5:ENST00000325385.12:ENST00000433430.5:ENST00000464554.5:ENST00000470087.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	78	2	5.25048	5.6088249999999995	5.96717	0.0108319	0.0059614	0.0707085	0.0479866
chr4	1326152	1326249	1995300	0	+	0.536082	(0.523,0.58]	chr4	203264	22	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	77	2	5.1205	5.608639999999999	6.09678	0.0416463	6.74499e-4	0.136301	0.0108081
chr22	25456958	25457058	7701110	0	+	0.39	(0.36,0.39]	chr22	805960	3	SS3_PROX	SS3_PROX:INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000382734.10:ENST00000686640.1:ENST00000509460.3:ENST00000415709.6:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	76	2	5.4139	5.608615	5.80333	0.0340874	0.00231859	0.125059	0.0255753
chr3	37862378	37862478	1443267	0	+	0.71	(0.58,1]	chr3	153955	1	SS5_PROX	SS5_PROX:INTRON	CTDSPL	ENSG00000144677.15	ENST00000273179.10:ENST00000443503.6:ENST00000435525.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	814	2	5.51364	5.608425	5.70321	4.53784e-5	1.00607e-6	0.00373536	1.05275e-4
chr21	45501429	45501528	7631319	0	+	0.59596	(0.58,1]	chr21	797812	34	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.54978	5.60838	5.66698	0.0102927	0.00165911	0.0684871	0.0202545
chr6	30160858	30160946	3116219	0	-	0.625	(0.58,1]	chr6	302320	1	UTR5	UTR5:EXON_MRNA	TRIM10	ENSG00000204613.11	ENST00000449742.7:ENST00000376704.3	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.54978	5.60838	5.66698	0.0102927	0.00165911	0.0684871	0.0202545
chr6	1737281	1737380	3080244	0	-	0.30303	(0.29,0.33]	chr6	299476	104	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	86	2	4.72635	5.608285	6.49022	0.0672935	2.52154e-4	0.163263	0.00535512
chr22	33831643	33831743	7801982	0	-	0.44	(0.419,0.45]	chr22	817639	697	INTRON	INTRON	LARGE1	ENSG00000133424.22	ENST00000397394.8:ENST00000413114.6:ENST00000676070.1:ENST00000674543.1:ENST00000676370.1:ENST00000354992.7:ENST00000402320.6:ENST00000675416.1:ENST00000676132.1:ENST00000674789.1:ENST00000675277.1:ENST00000434071.6:ENST00000432776.6:ENST00000423375.2:ENST00000430220.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	79	2	5.1405	5.608225	6.07595	0.0550015	0.00132452	0.153337	0.0173138
chr9	77901161	77901261	4320546	0	-	0.49	(0.485,0.523]	chr9	412901	850	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.30837	5.608029999999999	5.90769	0.0314138	0.0011708	0.12069	0.0157899
chr9	15268348	15268448	4281926	0	-	0.54	(0.523,0.58]	chr9	409165	4	SS3_PROX	SS3_PROX:INTRON	TTC39B	ENSG00000155158.20	ENST00000512701.7:ENST00000297615.10:ENST00000380850.9:ENST00000505732.5:ENST00000506891.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	84	2	4.78384	5.6078399999999995	6.43184	0.0663135	2.62665e-4	0.162385	0.00552802
chr12	102854685	102854775	5485494	0	-	0.488889	(0.485,0.523]	chr12	539525	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PAH	ENSG00000171759.10	ENST00000553106.6:ENST00000307000.7:ENST00000549111.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	431	2	3.61457	5.607725	7.60088	4.87357e-4	3.22777e-4	0.0127785	0.00638477
chr20	36858076	36858176	7557082	0	-	0.5	(0.485,0.523]	chr20	789155	183	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	2	218	2	4.0757	5.607725	7.13975	0.00122997	5.49952e-4	0.0212869	0.00936261
chr22	25085988	25086088	7699893	0	+	0.4	(0.39,0.419]	chr22	805908	152	INTRON	INTRON	KIAA1671	ENSG00000197077.14	ENST00000358431.8:ENST00000406486.8:ENST00000494730.2:ENST00000401395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	81	2	4.99538	5.60768	6.21998	0.0613573	8.22163e-4	0.158506	0.0124043
chr16	29272213	29272313	6433559	0	+	0.5	(0.485,0.523]	chr16	636745	201	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	1	169	2	4.17794	5.607675	7.03741	0.0015038	0.0014639	0.0239138	0.0185482
chr5	180561310	180561409	2606277	0	+	0.393939	(0.39,0.419]	chr5	259120	75	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4:ENST00000502447.1:ENST00000504343.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	76	2	5.41254	5.60765	5.80276	0.0347088	0.00233691	0.12648	0.0257208
chr7	40617476	40617576	3358697	0	+	0.4	(0.39,0.419]	chr7	324373	1181	INTRON	INTRON	SUGCT	ENSG00000175600.16	ENST00000335693.9:ENST00000401647.7:ENST00000628514.3	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.41254	5.60765	5.80276	0.0347088	0.00233691	0.12648	0.0257208
chr20	21239181	21239280	7448907	0	+	0.525253	(0.523,0.58]	chr20	775009	60	INTRON	INTRON	KIZ	ENSG00000088970.16	ENST00000619574.4:ENST00000620891.4:ENST00000611685.4:ENST00000616848.4:ENST00000619189.5:ENST00000616679.4:ENST00000619179.4:ENST00000621366.1:ENST00000451772.5:ENST00000419359.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	77	2	5.30515	5.60756	5.90997	0.012016	0.00509102	0.0743424	0.0433513
chr1	5949342	5949440	387337	0	-	0.408163	(0.39,0.419]	chr1	44483	7	INTRON	INTRON	NPHP4	ENSG00000131697.18	ENST00000378156.9:ENST00000478423.6:ENST00000489180.6:ENST00000378169.7:ENST00000622020.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	85	2	4.82439	5.6075099999999996	6.39063	0.0762206	5.25726e-4	0.174484	0.00903907
chr8	133284756	133284846	4084171	0	-	0.522222	(0.485,0.523]	chr8	388346	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000676005.1:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1:ENST00000674839.1:ENST00000676064.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	435	2	5.02573	5.607425	6.18912	0.00985879	1.13589e-4	0.0664239	0.00594264
chr1	85453357	85453457	519895	0	-	0.41	(0.39,0.419]	chr1	61355	182	INTRON	INTRON	DDAH1	ENSG00000153904.21	ENST00000426972.8:ENST00000284031.13	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.57892	5.607385	5.63585	0.025023	0.00396694	0.10758	0.0368027
chr5	71644087	71644184	2447284	0	+	0.329897	(0.29,0.33]	chr5	244334	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MCCC2	ENSG00000131844.17	ENST00000505787.8:ENST00000682499.1:ENST00000682214.1:ENST00000682045.1:ENST00000683789.1:ENST00000681968.1:ENST00000512218.6:ENST00000682541.1:ENST00000682727.1:ENST00000683098.1:ENST00000683258.1:ENST00000684254.1:ENST00000683882.1:ENST00000684024.1:ENST00000683403.1:ENST00000682687.1:ENST00000682876.1:ENST00000683429.1:ENST00000340941.11:ENST00000505435.4:ENST00000683339.1:ENST00000683847.1:ENST00000684530.1:ENST00000684310.1:ENST00000509539.3:ENST00000681991.1:ENST00000682667.1:ENST00000684686.1:ENST00000684474.1:ENST00000682231.1:ENST00000682640.1:ENST00000682438.1:ENST00000684132.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	84	2	4.79099	5.606904999999999	6.42282	0.061706	3.05448e-4	0.158854	0.00616054
chr19	18466912	18467011	7347860	0	-	0.656566	(0.58,1]	chr19	761486	6	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	76	2	5.20223	5.606785	6.01134	0.00531709	0.00411607	0.047841	0.0374453
chr19	47226463	47226563	7392343	0	-	0.76	(0.58,1]	chr19	768094	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3:ENST00000598636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	76	2	5.20223	5.606785	6.01134	0.00531709	0.00411607	0.047841	0.0374453
chr20	36859773	36859873	7557099	0	-	0.48	(0.45,0.485]	chr20	789158	3	UTR5	UTR5:EXON_MRNA:INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.43172	5.60634	5.78096	0.0166968	0.00440365	0.0884836	0.0393688
chr14	54790533	54790632	5821702	0	+	0.444444	(0.419,0.45]	chr14	569165	17	UTR3	UTR3:EXON_MRNA	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9	protein_coding	protein_coding	protein_coding	protein_coding	6	1247	2	5.06526	5.605975000000001	6.14669	4.47059e-4	1.86215e-6	0.0121697	1.58913e-4
chr10	132554857	132554957	4617009	0	+	0.59	(0.58,1]	chr10	441139	163	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.25731	5.605925	5.95454	0.0059453	0.00358178	0.0506158	0.0342681
chr9	134352009	134352109	4260943	0	+	0.71	(0.58,1]	chr9	406311	250	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	75	2	5.25731	5.605925	5.95454	0.0059453	0.00358178	0.0506158	0.0342681
chr11	87110679	87110779	4911113	0	+	0.27	[0,0.29]	chr11	474124	189	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000529023.5:ENST00000526733.5:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5:ENST00000531800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	188	2	4.55031	5.605905	6.6615	0.00210107	1.05379e-4	0.0288563	0.00285635
chr2	240615090	240615189	1075090	0	+	0.535354	(0.523,0.58]	chr2	116637	77	INTRON	INTRON	CAPN10:GPR35	ENSG00000142330.20:ENSG00000178623.13	ENST00000270364.11:ENST00000319838.10:ENST00000403859.1	protein_coding	protein_coding	protein_coding	protein_coding	2	425	2	5.21056	5.605835	6.00111	8.86317e-4	5.4177e-6	0.0177478	3.34515e-4
chr1	1032115	1032214	1036	0	+	0.616162	(0.58,1]	chr1	166	93	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.14497	5.60548	6.06599	0.00477081	0.00474658	0.0450109	0.0413976
chr19	38309829	38309923	7375815	0	-	0.478723	(0.45,0.485]	chr19	764693	3	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	YIF1B	ENSG00000167645.17	ENST00000339413.11:ENST00000592694.5:ENST00000337679.12:ENST00000392124.7:ENST00000591784.5:ENST00000329420.12:ENST00000591755.5:ENST00000589644.1:ENST00000585563.5:ENST00000589247.1:ENST00000587361.1:ENST00000587039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	77	2	5.33781	5.605119999999999	5.87243	0.0143887	0.0054758	0.0821732	0.0454065
chr11	70574529	70574629	5060018	0	-	0.57	(0.523,0.58]	chr11	492663	712	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	74	2	5.47382	5.604955	5.73609	0.0244797	0.0017613	0.106683	0.0211077
chr18	74835313	74835413	7091630	0	+	0.53	(0.523,0.58]	chr18	722438	308	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.55012	5.604855	5.65959	0.0217068	0.0021416	0.100615	0.0240825
chr17	4853517	4853617	6672088	0	+	0.47	(0.45,0.485]	chr17	668609	195	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	85	2	4.95056	5.604715000000001	6.25887	0.0127826	0.00748565	0.0773423	0.0576451
chr14	94309041	94309138	6046263	0	-	0.587629	(0.58,1]	chr14	593049	25	INTRON	INTRON	SERPINA6	ENSG00000170099.6	ENST00000341584.4:ENST00000555056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	152	2	4.40362	5.604345	6.80507	0.00101308	5.10596e-4	0.0191342	0.00886422
chr21	41830026	41830125	7673622	0	-	0.393939	(0.39,0.419]	chr21	801978	13	INTRON	INTRON	PRDM15	ENSG00000141956.14	ENST00000422911.6:ENST00000441787.5:ENST00000449395.6:ENST00000398548.6:ENST00000447016.6:ENST00000269844.5:ENST00000491486.5:ENST00000489661.5:ENST00000496124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	76	2	5.37172	5.604315	5.83691	0.0367885	0.00215135	0.129052	0.0241566
chr16	18919654	18919753	6561007	0	-	0.373737	(0.36,0.39]	chr16	654213	81	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000532700.6:ENST00000569122.1	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.40829	5.604175	5.80006	0.0191255	0.00581205	0.0952349	0.0472624
chr2	36566897	36566997	1118459	0	-	0.36	(0.33,0.36]	chr2	122278	55	INTRON	INTRON	FEZ2	ENSG00000171055.15	ENST00000414288.5:ENST00000379245.8:ENST00000405912.8:ENST00000413938.5:ENST00000441005.5:ENST00000305852.11:ENST00000451623.5:ENST00000487282.5:ENST00000464964.1:ENST00000357996.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	75	2	5.50203	5.60417	5.70631	0.0265895	0.00260751	0.111433	0.0278222
chr17	80877025	80877125	6812241	0	+	0.68	(0.58,1]	chr17	687891	188	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	74	2	5.11355	5.604025	6.0945	0.0271806	3.47472e-4	0.112113	0.00673552
chr8	9773314	9773411	3754911	0	+	0.309278	(0.29,0.33]	chr8	360888	5	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.55737	5.60401	5.65065	0.0196268	0.00240038	0.095549	0.0261006
chr15	76652474	76652574	6329352	0	-	0.4	(0.39,0.419]	chr15	624252	303	INTRON	INTRON	SCAPER	ENSG00000140386.13	ENST00000563290.6:ENST00000538941.6:ENST00000324767.11:ENST00000303521.10:ENST00000564757.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	76	2	5.53798	5.60395	5.66992	0.0237738	0.0043589	0.105296	0.0391245
chr5	1329090	1329189	2609106	0	-	0.636364	(0.58,1]	chr5	259719	28	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	78	2	4.88945	5.6038250000000005	6.3182	0.0388928	1.74994e-4	0.131324	0.00410754
chr3	43325998	43326097	1453781	0	+	0.444444	(0.419,0.45]	chr3	155160	109	INTRON	INTRON	SNRK	ENSG00000163788.14	ENST00000454177.5:ENST00000429705.6:ENST00000296088.12:ENST00000437827.1:ENST00000462810.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	76	2	5.52073	5.603745	5.68676	0.0327198	0.00338051	0.122543	0.0328791
chr2	3289912	3290011	1081006	0	-	0.636364	(0.58,1]	chr2	117633	72	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	72	2	5.50497	5.60344	5.70191	0.00964351	0.00187297	0.0659937	0.0219434
chr17	7112239	7112337	6847756	0	-	0.561224	(0.523,0.58]	chr17	693423	30	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	216	2	4.15646	5.60332	7.05018	0.00148008	4.20892e-4	0.023604	0.00773213
chr16	12723033	12723133	6551380	0	-	0.58	(0.523,0.58]	chr16	652230	176	INTRON	INTRON	CPPED1	ENSG00000103381.12	ENST00000381774.9:ENST00000433677.6:ENST00000261660.4	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.5868	5.60328	5.61976	0.020474	0.00236826	0.0979776	0.0259199
chr6	82006038	82006138	3190018	0	-	0.56	(0.523,0.58]	chr6	309363	366	INTRON	INTRON	LINC02542	ENSG00000226453.3	ENST00000667666.1:ENST00000663543.1:ENST00000668303.1:ENST00000660637.1:ENST00000668266.1:ENST00000666226.1	lncRNA	lncRNA	lncRNA	lncRNA	0	74	2	5.5868	5.60328	5.61976	0.020474	0.00236826	0.0979776	0.0259199
chr9	34399314	34399411	4296600	0	-	0.57732000000000006	(0.523,0.58]	chr9	410635	11	UTR3	UTR3:EXON_MRNA:INTRON	FAM219A	ENSG00000164970.15	ENST00000651358.1:ENST00000379080.5:ENST00000379081.5:ENST00000379084.5:ENST00000379087.5:ENST00000379089.5:ENST00000445726.5:ENST00000297620.8	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.5868	5.60328	5.61976	0.020474	0.00236826	0.0979776	0.0259199
chr3	19978500	19978598	1420956	0	+	0.357143	(0.33,0.36]	chr3	152598	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000446547.5:ENST00000422242.1:ENST00000469122.5:ENST00000473608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	75	2	5.46338	5.60323	5.74308	0.0281891	0.00238447	0.114124	0.0260514
chr6	30160029	30160129	3116210	0	-	0.36	(0.33,0.36]	chr6	302316	2	SS5_PROX	SS5_PROX:INTRON	TRIM10	ENSG00000204613.11	ENST00000449742.7:ENST00000376704.3	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.57634	5.60309	5.62984	0.0237329	0.00313405	0.10525	0.0312116
chr16	22423713	22423813	6566801	0	-	0.49	(0.485,0.523]	chr16	655121	11	INTRON	INTRON	CDR2:RRN3P3	ENSG00000140743.8:ENSG00000257122.5	ENST00000564542.5:ENST00000563573.5:ENST00000569045.1:ENST00000551766.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	3	592	2	4.49711	5.6029350000000004	6.70876	0.00151235	5.43713e-7	0.0240218	7.00264e-5
chr4	3219113	3219208	2004089	0	+	0.610526	(0.58,1]	chr4	204561	8	INTRON	INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000510626.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	74	2	5.31036	5.602885000000001	5.89541	0.0066708	0.00312721	0.0540577	0.0311915
chr16	85384838	85384938	6516919	0	+	0.65	(0.58,1]	chr16	646391	255	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	88	2	4.74346	5.60279	6.46212	0.0121457	0.00211728	0.0754623	0.028892
chr13	113055802	113055902	5656195	0	+	0.65	(0.58,1]	chr13	555189	10	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	3	248	2	3.58663	5.602495	7.61836	7.80685e-4	1.59836e-4	0.01194	0.00707846
chr17	344317	344417	6821732	0	-	0.44	(0.419,0.45]	chr17	689629	30	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000577079.5:ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.35317	5.602185	5.8512	0.0201381	0.00714797	0.0973365	0.0541241
chr10	126925644	126925743	4607150	0	+	0.515152	(0.485,0.523]	chr10	440634	197	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.17012	5.602040000000001	6.03396	0.038581	8.35707e-4	0.131324	0.012554
chr22	25188424	25188523	7700925	0	+	0.464646	(0.45,0.485]	chr22	805939	21	INTRON	INTRON	KIAA1671	ENSG00000197077.14	ENST00000358431.8:ENST00000406486.8:ENST00000401395.1:ENST00000637069.1	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.34301	5.602035	5.86106	0.0328801	0.00153611	0.122593	0.0191553
chr4	868978	869076	2178282	0	-	0.510204	(0.485,0.523]	chr4	220580	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	75	2	5.26375	5.60203	5.94031	0.0335928	0.00107389	0.124319	0.0148869
chr18	23548508	23548608	7132152	0	-	0.34	(0.33,0.36]	chr18	725747	4	SS3_PROX	SS3_PROX:INTRON	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000591051.1:ENST00000540608.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	78	2	5.27557	5.601850000000001	5.92813	0.0135535	0.00707628	0.0793558	0.0540197
chr12	26712452	26712549	5400383	0	-	0.443299	(0.419,0.45]	chr12	528698	8	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000540791.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	76	2	5.59315	5.60173	5.61031	0.029494	0.004032	0.116079	0.0371291
chr2	235511534	235511634	1062711	0	+	0.49	(0.485,0.523]	chr2	115651	163	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	165	2	4.29031	5.601595	6.91288	0.00191584	0.00107516	0.0274102	0.0148869
chr3	12964705	12964804	1688776	0	-	0.494949	(0.485,0.523]	chr3	176520	37	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	75	2	5.44489	5.6013649999999995	5.75784	0.0154142	0.00377098	0.0849828	0.0353672
chr9	129619118	129619218	4251022	0	+	0.45	(0.419,0.45]	chr9	404743	96	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	2	232	2	4.03273	5.601335000000001	7.16994	0.00226312	9.15111e-4	0.0300628	0.0133748
chr2	3287816	3287915	1080985	0	-	0.515152	(0.485,0.523]	chr2	117633	51	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	164	2	4.82594	5.601185	6.37643	0.0052506	2.3002e-4	0.0476984	0.00498593
chr1	7498900	7499000	15599	0	+	0.46	(0.45,0.485]	chr1	1895	306	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	5.01267	5.601045	6.18942	0.011221	0.00844217	0.071709	0.0617623
chr7	87463208	87463308	3629535	0	-	0.37	(0.36,0.39]	chr7	349608	3	SS3_PROX	SS3_PROX:INTRON	ABCB4	ENSG00000005471.19	ENST00000649586.2:ENST00000265723.8:ENST00000359206.8:ENST00000453593.5:ENST00000643670.1:ENST00000644106.1:ENST00000473795.1:ENST00000417608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	76	2	5.49642	5.6004950000000004	5.70457	0.022152	0.00476539	0.101784	0.0414441
chr8	18913032	18913132	3951127	0	-	0.37	(0.36,0.39]	chr8	377294	261	INTRON	INTRON	PSD3	ENSG00000156011.18	ENST00000327040.13:ENST00000440756.4	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.49642	5.6004950000000004	5.70457	0.022152	0.00476539	0.101784	0.0414441
chr2	235503341	235503441	1062629	0	+	0.59	(0.58,1]	chr2	115651	81	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	81	2	4.95814	5.600295	6.24245	0.0074469	0.00334087	0.0553519	0.0368376
chr9	134372339	134372439	4261147	0	+	0.66	(0.58,1]	chr9	406314	2	SS5_PROX	SS5_PROX:INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2:ENST00000356384.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	81	2	4.95814	5.600295	6.24245	0.0074469	0.00334087	0.0553519	0.0368376
chr17	72556826	72556925	6963879	0	-	0.555556	(0.523,0.58]	chr17	710389	224	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	2	237	2	4.80377	5.60029	6.39681	0.00509616	5.76236e-5	0.0467496	0.00182014
chr1	65154182	65154281	158512	0	+	0.393939	(0.39,0.419]	chr1	18050	47	INTRON	INTRON	AK4	ENSG00000162433.15	ENST00000545314.5:ENST00000497030.5:ENST00000470888.6:ENST00000546702.5:ENST00000395334.6:ENST00000327299.8:ENST00000474968.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	76	2	5.32971	5.59999	5.87027	0.0390381	0.00198333	0.131575	0.0229039
chr2	201069365	201069464	1356542	0	-	0.353535	(0.33,0.36]	chr2	144186	76	INTRON	INTRON	FAM126B	ENSG00000155744.10	ENST00000681958.1:ENST00000418596.7:ENST00000286181.7:ENST00000498780.5:ENST00000452799.5:ENST00000453765.5:ENST00000446678.5:ENST00000474118.5:ENST00000485636.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	87	2	4.70894	5.599975000000001	6.49101	0.0798152	3.40831e-4	0.176933	0.00667174
chr7	47500015	47500114	3588812	0	-	0.323232	(0.29,0.33]	chr7	346132	185	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.56987	5.599855	5.62984	0.0174273	0.0029307	0.0901531	0.0298918
chr20	18623872	18623971	7443668	0	+	0.474747	(0.45,0.485]	chr20	774746	34	INTRON	INTRON	ENSG00000284776:DTD1	ENSG00000284776.1:ENSG00000125821.13	ENST00000618693.4:ENST00000647441.1:ENST00000494921.2:ENST00000377452.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	76	2	5.20906	5.599605	5.99015	0.0399616	0.00110015	0.133954	0.015136
chr18	69779626	69779724	7086980	0	+	0.408163	(0.39,0.419]	chr18	722169	13	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10:ENST00000577609.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	76	2	5.49586	5.599535	5.70321	0.0226065	0.00479873	0.102982	0.0416285
chr2	53549957	53550056	1143462	0	-	0.393939	(0.39,0.419]	chr2	125031	157	INTRON	INTRON	ASB3	ENSG00000115239.24	ENST00000406053.5	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.49586	5.599535	5.70321	0.0226065	0.00479873	0.102982	0.0416285
chr11	9768170	9768270	4797672	0	+	0.45	(0.419,0.45]	chr11	460091	93	INTRON	INTRON	SBF2-AS1	ENSG00000246273.8	ENST00000663578.1:ENST00000498905.2:ENST00000527406.1:ENST00000499953.6:ENST00000650092.1:ENST00000658574.1:ENST00000664105.1	lncRNA	lncRNA	lncRNA	lncRNA	0	76	2	5.57051	5.59928	5.62805	0.0280406	0.00441471	0.113651	0.0393688
chr13	43855354	43855452	5700421	0	-	0.438776	(0.419,0.45]	chr13	559284	14	EXON_LNCRNA	EXON_LNCRNA:INTRON	CCDC122	ENSG00000151773.13	ENST00000470137.5:ENST00000444614.8:ENST00000476570.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	76	2	5.57051	5.59928	5.62805	0.0280406	0.00441471	0.113651	0.0393688
chr1	161020009	161020109	606376	0	-	0.49	(0.485,0.523]	chr1	72054	170	INTRON	INTRON	F11R:ENSG00000270149	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7:ENST00000537746.1:ENST00000470694.1:ENST00000335772.3:ENST00000602966.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	74	2	5.57523	5.599115	5.623	0.0192139	0.00274261	0.095424900000000007	0.028553
chr10	48040238	48040338	4680768	0	-	0.5	(0.485,0.523]	chr10	446508	8	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	0	74	2	5.57523	5.599115	5.623	0.0192139	0.00274261	0.095424900000000007	0.028553
chr1	35715241	35715338	445617	0	-	0.474227	(0.45,0.485]	chr1	53053	15	UTR3	UTR3:EXON_MRNA	C1orf216	ENSG00000142686.8	ENST00000270815.5	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	4.9538	5.59901	6.24422	0.0569772	5.58345e-4	0.154343	0.00944382
chr8	130284741	130284841	4082041	0	-	0.39	(0.36,0.39]	chr8	388157	378	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000521075.5:ENST00000524367.5:ENST00000520927.5:ENST00000524299.1:ENST00000521426.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	177	2	4.95123	5.599	6.24677	0.00931845	2.32595e-4	0.0649153	0.00502875
chr1	16131069	16131144	403892	0	-	0.573333	(0.523,0.58]	chr1	46435	3	INTRON	INTRON	EPHA2	ENSG00000142627.13	ENST00000358432.8	protein_coding	protein_coding	protein_coding	protein_coding	1	163	2	4.34417	5.59881	6.85345	0.00216679	9.01636e-4	0.0292299	0.0132389
chr15	90034426	90034526	6183889	0	+	0.56	(0.523,0.58]	chr15	608320	272	INTRON	INTRON	ZNF710	ENSG00000140548.10	ENST00000268154.9:ENST00000559419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	198	2	4.36575	5.5984300000000005	6.83111	0.00469354	8.07247e-5	0.0447173	0.00233145
chr22	35992253	35992353	7805464	0	-	0.34	(0.33,0.36]	chr22	817798	307	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.38284	5.598375	5.81391	0.0317908	0.00200357	0.121384	0.0230381
chr20	36858574	36858674	7557087	0	-	0.41	(0.39,0.419]	chr20	789155	188	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	4	745	2	5.31773	5.59816	5.87859	3.52798e-4	9.89319e-6	0.0107365	5.1108e-4
chr1	1064589	1064689	1387	0	+	0.67	(0.58,1]	chr1	324	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000217801	ENSG00000217801.11	ENST00000688131.1:ENST00000456409.6:ENST00000692821.1:ENST00000394517.7:ENST00000427998.6:ENST00000685011.1:ENST00000692266.1:ENST00000412397.2:ENST00000433695.1:ENST00000451054.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	72	2	5.26138	5.59806	5.93474	0.021217	5.58693e-4	0.0996078	0.00944382
chr13	28139587	28139686	5555512	0	+	0.464646	(0.45,0.485]	chr13	548208	1	INTRON	INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	222	2	3.9579	5.59795	7.238	0.00123254	8.5709e-4	0.021319	0.0127588
chr8	503488	503588	3931439	0	-	0.54	(0.523,0.58]	chr8	375980	85	INTRON	INTRON	TDRP	ENSG00000180190.13	ENST00000523656.5:ENST00000324079.11	protein_coding	protein_coding	protein_coding	protein_coding	1	195	2	4.13888	5.597775	7.0566700000000004	0.00718012	4.04959e-5	0.056408	0.00140723
chr22	17827981	17828081	7757817	0	-	0.44	(0.419,0.45]	chr22	813059	2	SS3_PROX	SS3_PROX:INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000498573.5:ENST00000578984.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	79	2	5.09133	5.597715	6.1041	0.0586308	0.00123471	0.155565	0.0164614
chr17	81139198	81139298	6982894	0	-	0.65	(0.58,1]	chr17	713268	43	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	73	2	5.36153	5.59764	5.83375	0.00751249	0.00273899	0.0576451	0.028553
chr1	43964914	43965007	110810	0	+	0.44086	(0.419,0.45]	chr1	13723	2	INTRON	INTRON	IPO13	ENSG00000117408.11	ENST00000372343.8	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	4.9329	5.597625	6.26235	0.0716557	8.27298e-4	0.168159	0.0124589
chr5	302678	302778	2377949	0	+	0.62	(0.58,1]	chr5	237467	259	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	179	2	4.39644	5.5974450000000004	6.79845	0.00271982	3.72743e-5	0.0331692	0.00131851
chr16	572121	572217	6368136	0	+	0.645833	(0.58,1]	chr16	627950	10	INTRON	INTRON	PIGQ	ENSG00000007541.17	ENST00000293874.2:ENST00000409527.6:ENST00000321878.10:ENST00000439574.1:ENST00000422307.6:ENST00000636657.1:ENST00000026218.9:ENST00000470411.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	71	2	5.51813	5.597275	5.67642	0.013519	0.00117039	0.0792526	0.0157899
chr19	309808	309904	7302971	0	-	0.572917	(0.523,0.58]	chr19	752391	5	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.53665	5.59707	5.65749	0.0182707	0.00291382	0.0921579	0.0298557
chr4	76138397	76138496	2253374	0	-	0.30303	(0.29,0.33]	chr4	227588	16	INTRON	INTRON	NUP54	ENSG00000138750.16	ENST00000695546.1:ENST00000695547.1:ENST00000695552.1:ENST00000507257.6:ENST00000264883.8:ENST00000510569.6:ENST00000515460.6:ENST00000695554.1:ENST00000695553.1:ENST00000695548.1:ENST00000695551.1:ENST00000695556.1:ENST00000695549.1:ENST00000695550.1:ENST00000695555.1:ENST00000514313.2:ENST00000514987.6:ENST00000502850.5:ENST00000508465.6:ENST00000512151.5:ENST00000504173.1:ENST00000695557.1:ENST00000514307.5:ENST00000508583.6:ENST00000506098.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	74	2	5.35847	5.59662	5.83477	0.0269557	0.00150459	0.112113	0.0188758
chr2	235522025	235522124	1062816	0	+	0.434343	(0.419,0.45]	chr2	115651	268	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	82	2	5.09718	5.59618	6.09518	0.0138177	0.012235	0.0803169	0.0757339
chr21	8810167	8810267	7637417	0	-	0.51	(0.485,0.523]	chr21	798930	26	INTRON	INTRON	ENSG00000286033	ENSG00000286033.1	ENST00000651312.1	lncRNA	lncRNA	lncRNA	lncRNA	0	74	2	5.35167	5.595905	5.84014	0.0294163	0.00139792	0.116079	0.0179863
chr16	81680024	81680123	6510111	0	+	0.50505	(0.485,0.523]	chr16	645979	10	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	1	168	2	4.15438	5.5958950000000005	7.03741	0.00156066	0.0015038	0.0239138	0.0194067
chr2	105830587	105830687	869425	0	+	0.45	(0.419,0.45]	chr2	98084	136	INTRON	INTRON	NCK2	ENSG00000071051.14	ENST00000233154.9:ENST00000451463.6:ENST00000393348.6:ENST00000522586.5	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.52959	5.595855	5.66212	0.0266819	0.00484244	0.111563	0.0418176
chr16	81640565	81640665	6509703	0	+	0.54	(0.523,0.58]	chr16	645926	185	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.40225	5.595745000000001	5.78924	0.0147166	0.00404292	0.0826843	0.0371291
chr8	98112147	98112246	4020491	0	-	0.323232	(0.29,0.33]	chr8	384191	30	INTRON	INTRON	RIDA	ENSG00000132541.11	ENST00000254878.8:ENST00000522791.5:ENST00000520507.5:ENST00000521560.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	75	2	5.22448	5.59565	5.96682	0.0331252	0.00106564	0.123313	0.0148659
chr2	55022492	55022592	1148252	0	-	0.5	(0.485,0.523]	chr2	125466	81	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.53308	5.595495	5.65791	0.0181582	0.00304306	0.0921579	0.0306636
chr18	80033152	80033251	7182841	0	-	0.414141	(0.39,0.419]	chr18	730350	22	INTRON	INTRON	TXNL4A	ENSG00000141759.15	ENST00000585474.5:ENST00000592957.1:ENST00000589926.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	77	2	5.36155	5.595365	5.82918	0.0186329	0.00648185	0.0932878	0.0503748
chr11	71068758	71068858	5064981	0	-	0.52	(0.485,0.523]	chr11	492754	118	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000618363.4:ENST00000458632.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	75	2	5.21769	5.59495	5.97221	0.0359739	9.86421e-4	0.127853	0.0140716
chr19	47685444	47685544	7278471	0	+	0.52	(0.485,0.523]	chr19	747629	775	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	1	161	2	4.52889	5.59488	6.66087	0.00309962	5.4844e-4	0.0355173	0.00933876
chr1	112705639	112705726	563026	0	-	0.505747	(0.485,0.523]	chr1	64621	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	RHOC	ENSG00000155366.17	ENST00000369633.6:ENST00000369642.7:ENST00000339083.12:ENST00000285735.6:ENST00000468093.5:ENST00000369638.6:ENST00000369637.5:ENST00000369636.6:ENST00000484280.6:ENST00000369632.6:ENST00000425265.6:ENST00000436685.6:ENST00000528831.5:ENST00000484054.3:ENST00000478447.1:ENST00000527563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	77	2	5.25048	5.59477	5.93906	0.0113657	0.0059614	0.0723462	0.0479866
chr21	41829827	41829926	7673620	0	-	0.40404	(0.39,0.419]	chr21	801978	11	INTRON	INTRON	PRDM15	ENSG00000141956.14	ENST00000422911.6:ENST00000441787.5:ENST00000449395.6:ENST00000398548.6:ENST00000447016.6:ENST00000269844.5:ENST00000491486.5:ENST00000489661.5:ENST00000496124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	76	2	5.28643	5.5946549999999995	5.90288	0.041475	0.00183094	0.136301	0.0216571
chr19	18468199	18468298	7347873	0	-	0.454545	(0.45,0.485]	chr19	761486	19	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	207	2	3.53579	5.59465	7.65351	0.00804225	5.46137e-4	0.0582806	0.0136476
chr19	44174084	44174184	7267343	0	+	0.34	(0.33,0.36]	chr19	746073	12	UTR3	UTR3:EXON_MRNA:INTRON	ZNF226	ENSG00000167380.17	ENST00000590578.5:ENST00000337433.10:ENST00000588883.5:ENST00000586914.5:ENST00000413984.6:ENST00000300823.10:ENST00000588742.5:ENST00000585678.5:ENST00000588127.5:ENST00000590089.5:ENST00000454662.6:ENST00000590524.1	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.34082	5.594445	5.84807	0.0338211	0.00184078	0.124319	0.0217471
chr11	117810185	117810284	5134985	0	-	0.585859	(0.58,1]	chr11	498595	78	INTRON	INTRON	FXYD2	ENSG00000137731.14	ENST00000514385.1:ENST00000532119.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	71	2	5.39546	5.594145	5.79283	0.0168207	8.4246e-4	0.0884836	0.0125912
chr14	104777907	104778002	6057668	0	-	0.663158	(0.58,1]	chr14	594698	13	EXON_MRNA	EXON_MRNA:INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000557552.1:ENST00000683722.1:ENST00000555528.5:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000554848.5:ENST00000682269.1:ENST00000555380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	71	2	5.39546	5.594145	5.79283	0.0168207	8.4246e-4	0.0884836	0.0125912
chr13	112972147	112972246	5655342	0	+	0.373737	(0.36,0.39]	chr13	555120	23	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.214	5.593975	5.97395	0.0145438	0.00887999	0.0823572	0.0618231
chr5	141395521	141395621	2553823	0	+	0.39	(0.36,0.39]	chr5	253750	32	INTRON	INTRON	PCDHGB1:PCDHGB4	ENSG00000254221.3:ENSG00000253953.3	ENST00000523390.2:ENST00000519479.2	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.214	5.593975	5.97395	0.0145438	0.00887999	0.0823572	0.0618231
chr20	3117244	3117342	7514540	0	-	0.459184	(0.45,0.485]	chr20	784453	14	INTRON	INTRON	UBOX5	ENSG00000185019.17	ENST00000348031.6:ENST00000217173.7	protein_coding	protein_coding	protein_coding	protein_coding	1	164	2	4.64267	5.5938099999999995	6.54495	0.00450754	4.4327e-4	0.0436138	0.00804207
chr6	2209656	2209756	3084980	0	-	0.3	(0.29,0.33]	chr6	299526	338	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5	protein_coding	protein_coding	protein_coding	protein_coding	2	218	2	4.32558	5.59319	6.8608	0.00184805	2.75731e-4	0.0268409	0.00572834
chr1	9298490	9298590	19639	0	+	0.4	(0.39,0.419]	chr1	2205	35	INTRON	INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11:ENST00000450402.1	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	4.9406	5.593115	6.24563	0.0658437	7.69256e-4	0.162385	0.0118331
chr13	98015129	98015229	5633545	0	+	0.38	(0.36,0.39]	chr13	553410	2	SS3_PROX	SS3_PROX:INTRON	IPO5	ENSG00000065150.21	ENST00000651721.2:ENST00000261574.10:ENST00000357602.7:ENST00000490680.5:ENST00000469360.5:ENST00000491555.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	75	2	5.56654	5.592915	5.61929	0.0272676	0.00359045	0.112327	0.0342681
chr18	51181261	51181361	7166916	0	-	0.38	(0.36,0.39]	chr18	728518	33	INTRON	INTRON	MEX3C	ENSG00000176624.12	ENST00000406189.4:ENST00000591040.2	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.56654	5.592915	5.61929	0.0272676	0.00359045	0.112327	0.0342681
chr17	18019186	18019281	6866319	0	-	0.684211	(0.58,1]	chr17	695953	1	INTRON	INTRON	ATPAF2	ENSG00000171953.16	ENST00000584205.5:ENST00000462733.5:ENST00000585101.5:ENST00000474627.8:ENST00000496852.5:ENST00000467560.5:ENST00000581698.1:ENST00000469327.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	75	2	5.20223	5.592725	5.98322	0.00562007	0.00411607	0.0493906	0.0374453
chr12	114678909	114679004	5510648	0	-	0.473684	(0.45,0.485]	chr12	542613	9	INTRON	INTRON	TBX3	ENSG00000135111.16	ENST00000349155.7:ENST00000257566.7:ENST00000548503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	74	2	5.46558	5.59243	5.71928	0.0273644	0.00219685	0.112372	0.0245167
chr17	36512557	36512657	6889673	0	-	0.57	(0.523,0.58]	chr17	699508	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000612097.1:ENST00000620413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	74	2	5.49322	5.592395	5.69157	0.0172851	0.00324246	0.0897247	0.0319521
chr21	33294327	33294427	7609727	0	+	0.53	(0.523,0.58]	chr21	794716	2	SS5_PROX	SS5_PROX:INTRON	IL10RB	ENSG00000243646.11	ENST00000290200.7:ENST00000422891.5:ENST00000637650.2:ENST00000609556.3:ENST00000493295.5:ENST00000451065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	74	2	5.49322	5.592395	5.69157	0.0172851	0.00324246	0.0897247	0.0319521
chr7	97971553	97971634	3647666	0	-	0.493827	(0.485,0.523]	chr7	351035	5	INTRON	INTRON	ENSG00000284707:CCZ1P1	ENSG00000284707.2:ENSG00000243554.1	ENST00000641784.1:ENST00000641390.1:ENST00000453589.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	1	161	2	4.66851	5.59234	6.51617	0.00406194	3.66019e-4	0.0413652	0.00700609
chr18	39629530	39629630	7150694	0	-	0.41	(0.39,0.419]	chr18	727078	156	INTRON	INTRON	MIR924HG	ENSG00000267374.3	ENST00000670992.1:ENST00000591629.2:ENST00000662708.1:ENST00000663592.1:ENST00000665749.1:ENST00000668737.1:ENST00000669590.1:ENST00000667816.1:ENST00000666361.1:ENST00000671441.1:ENST00000668052.1:ENST00000669399.1:ENST00000666611.1:ENST00000667009.1:ENST00000666148.1:ENST00000667500.1:ENST00000658829.1:ENST00000665844.1:ENST00000670388.1:ENST00000653594.1:ENST00000660099.1:ENST00000655349.1:ENST00000665416.1:ENST00000655720.1:ENST00000668391.1:ENST00000652839.1:ENST00000654975.1:ENST00000667895.1:ENST00000670943.1:ENST00000670383.1:ENST00000652860.1:ENST00000664919.1:ENST00000660405.1:ENST00000667722.1:ENST00000653742.1:ENST00000666181.1:ENST00000654966.1:ENST00000658177.1:ENST00000670121.1:ENST00000669520.1:ENST00000663334.1	lncRNA	lncRNA	lncRNA	lncRNA	0	75	2	5.56518	5.59195	5.61872	0.027797	0.00361685	0.112962	0.0342681
chr8	125183595	125183695	3915766	0	+	0.4	(0.39,0.419]	chr8	374068	9	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000517532.5:ENST00000287437.8:ENST00000522563.5:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.56518	5.59195	5.61872	0.027797	0.00361685	0.112962	0.0342681
chr7	92688519	92688619	3637484	0	-	0.43	(0.419,0.45]	chr7	350310	166	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000473078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	236	2	4.40601	5.591905000000001	6.7778	0.00448826	3.28496e-4	0.0436138	0.00647074
chr2	65234953	65235053	820869	0	+	0.31	(0.29,0.33]	chr2	92697	66	INTRON	INTRON	ACTR2	ENSG00000138071.15	ENST00000476840.5:ENST00000260641.10:ENST00000471552.5:ENST00000377982.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	74	2	5.48431	5.591575	5.69884	0.0155382	0.00360762	0.0849828	0.0342681
chr4	152419517	152419616	2354485	0	-	0.434343	(0.419,0.45]	chr4	235290	66	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.48746	5.59143	5.6954	0.0254103	0.00532156	0.108573	0.0446153
chr7	75712768	75712868	3608231	0	-	0.35	(0.33,0.36]	chr7	348444	577	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6:ENST00000485723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	205	2	4.41697	5.59135	6.76573	0.00482117	1.5822e-4	0.0453395	0.00384084
chr10	79166328	79166428	4533020	0	+	0.61	(0.58,1]	chr10	432438	38	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.25731	5.591295000000001	5.92528	0.0062948	0.00358178	0.0523832	0.0342681
chr1	8542117	8542216	392967	0	-	0.494949	(0.485,0.523]	chr1	45029	4	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000469251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	162	2	4.37429	5.59114	6.80799	0.0023441	8.506e-4	0.0305023	0.0126678
chr9	61970320	61970420	4158029	0	+	0.48	(0.45,0.485]	chr9	395243	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	FAM27C	ENSG00000231527.7	ENST00000653087.1:ENST00000660875.1:ENST00000670686.1:ENST00000443347.6:ENST00000668789.1:ENST00000657353.1:ENST00000669747.1:ENST00000662964.1:ENST00000650759.1:ENST00000656926.1:ENST00000655025.1:ENST00000655049.1:ENST00000659299.1:ENST00000651201.1:ENST00000651799.1	lncRNA	lncRNA	lncRNA	lncRNA	0	74	2	5.42587	5.59096	5.75605	0.0290571	0.002004	0.116079	0.0230381
chr13	44405413	44405513	5700731	0	-	0.5	(0.485,0.523]	chr13	559337	4	SS5_PROX	SS5_PROX:INTRON	TUSC8	ENSG00000237361.4	ENST00000432701.3:ENST00000660135.2:ENST00000607312.1	lncRNA	lncRNA	lncRNA	lncRNA	0	74	2	5.48966	5.59083	5.692	0.0171772	0.0033837199999999998	0.0895975	0.0328791
chr4	118605183	118605283	2113679	0	+	0.51	(0.485,0.523]	chr4	214795	2	SS3_PROX	SS3_PROX:INTRON	ENSG00000260404	ENSG00000260404.4	ENST00000691531.1:ENST00000693188.1:ENST00000567913.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	74	2	5.48966	5.59083	5.692	0.0171772	0.0033837199999999998	0.0895975	0.0328791
chr14	54757082	54757181	5821358	0	+	0.40404	(0.39,0.419]	chr14	569119	18	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555192.1	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.26451	5.590714999999999	5.91692	0.0162442	0.00800901	0.0873195	0.0580954
chr21	29344588	29344685	7604101	0	+	0.391753	(0.39,0.419]	chr21	794453	19	UTR3	UTR3:EXON_MRNA:INTRON	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5:ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	5.26451	5.590714999999999	5.91692	0.0162442	0.00800901	0.0873195	0.0580954
chr3	63982545	63982642	1495226	0	+	0.391753	(0.39,0.419]	chr3	160352	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATXN7	ENSG00000163635.20	ENST00000674280.1:ENST00000474112.5:ENST00000295900.10:ENST00000487717.5:ENST00000522345.2:ENST00000484332.1:ENST00000466529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	78	2	5.26451	5.590714999999999	5.91692	0.0162442	0.00800901	0.0873195	0.0580954
chr12	132535356	132535456	5352969	0	+	0.54	(0.523,0.58]	chr12	523670	70	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	194	2	4.10968	5.590595	7.07151	0.0075776	3.86786e-5	0.0579104	0.00135841
chr9	124492440	124492529	4402648	0	-	0.494382	(0.485,0.523]	chr9	419811	9	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	2	424	2	5.07586	5.590389999999999	6.10492	0.00115702	4.07657e-6	0.0205679	2.74028e-4
chr13	113054101	113054201	5656177	0	+	0.47	(0.45,0.485]	chr13	555186	4	SS3_PROX	SS3_PROX:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	76	2	5.33781	5.590195	5.84258	0.0151085	0.0054758	0.0841543	0.0454065
chr8	98625265	98625365	4024170	0	-	0.4	(0.39,0.419]	chr8	384371	231	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518582.5:ENST00000518165.5:ENST00000521649.5:ENST00000424861.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	75	2	5.41254	5.59016	5.76778	0.0347088	0.0025422	0.12648	0.0271978
chr10	79164330	79164430	4533000	0	+	0.46	(0.45,0.485]	chr10	432438	18	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	3	266	2	3.66163	5.590035	7.51844	0.00104211	7.1335e-4	0.0157644	0.0146361
chr13	99368603	99368702	5638538	0	+	0.414141	(0.39,0.419]	chr13	553755	3	INTRON	INTRON	UBAC2	ENSG00000134882.16	ENST00000355700.9:ENST00000403766.8:ENST00000376440.6:ENST00000494576.5:ENST00000473194.5:ENST00000460562.5:ENST00000480738.1:ENST00000474510.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	75	2	5.57892	5.5899350000000005	5.60095	0.0263614	0.00396694	0.110638	0.0368027
chr4	13465724	13465824	2196880	0	-	0.4	(0.39,0.419]	chr4	222485	45	INTRON	INTRON	RAB28	ENSG00000157869.16	ENST00000511649.5:ENST00000330852.10:ENST00000288723.9:ENST00000508274.5:ENST00000338176.8:ENST00000630951.1:ENST00000510528.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	75	2	5.57892	5.5899350000000005	5.60095	0.0263614	0.00396694	0.110638	0.0368027
chr5	79398235	79398334	2709373	0	-	0.40404	(0.39,0.419]	chr5	266906	2	INTRON	INTRON	HOMER1	ENSG00000152413.15	ENST00000334082.11:ENST00000282260.10:ENST00000508576.5:ENST00000535690.1	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.57892	5.5899350000000005	5.60095	0.0263614	0.00396694	0.110638	0.0368027
chrX	47220486	47220584	7877808	0	+	0.530612	(0.523,0.58]	chrX	825683	10	INTRON	INTRON	CDK16	ENSG00000102225.17	ENST00000517997.5:ENST00000517479.1:ENST00000457458.6:ENST00000522883.1:ENST00000520295.5:ENST00000357227.9:ENST00000519758.5:ENST00000520893.5:ENST00000517426.5:ENST00000522234.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	215	2	4.01591	5.589855	7.1638	0.00118398	6.36322e-4	0.020806	0.0103364
chr11	122744297	122744397	4958987	0	+	0.45	(0.419,0.45]	chr11	479003	168	INTRON	INTRON	UBASH3B	ENSG00000154127.10	ENST00000284273.6:ENST00000526386.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	252	2	5.32195	5.589725	5.8575	0.0431627	1.86881e-5	0.138403	8.0353e-4
chr22	48754130	48754230	7751811	0	+	0.63	(0.58,1]	chr22	812294	23	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000336769.9	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	4.89007	5.589605	6.28914	0.00872525	0.00303562	0.0612699	0.0350226
chr2	240623496	240623595	1075178	0	+	0.686869	(0.58,1]	chr2	116654	41	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	1	207	2	5.0238	5.58878	6.15376	6.75292e-4	2.90409e-4	0.0153083	0.0059241
chr8	70401013	70401113	3995225	0	-	0.44	(0.419,0.45]	chr8	382245	1039	INTRON	INTRON	NCOA2	ENSG00000140396.13	ENST00000452400.7:ENST00000518287.6:ENST00000520416.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	209	2	4.12664	5.588735	7.05083	0.0100106	9.91396e-5	0.0675109	0.00271927
chr9	137688926	137689026	4265176	0	+	0.54	(0.523,0.58]	chr9	407335	32	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1:ENST00000637655.1:ENST00000636027.1:ENST00000492232.5:ENST00000460486.3:ENST00000636081.1:ENST00000637161.1:ENST00000629417.1:ENST00000637662.1:ENST00000636186.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	162	2	4.82222	5.5885549999999995	6.35489	0.00549977	2.24831e-4	0.0489559	0.00491787
chr7	111408400	111408500	3686152	0	-	0.34	(0.33,0.36]	chr7	354630	156	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.11012	5.5885	6.06688	0.04702	0.00105663	0.143232	0.0147548
chr1	29289382	29289482	78921	0	+	0.55	(0.523,0.58]	chr1	8984	3	SS3_PROX	SS3_PROX:INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2:ENST00000415600.6:ENST00000531385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	75	2	5.16969	5.58835	6.00701	0.0387762	8.61362e-4	0.131324	0.0127848
chr16	89350091	89350191	6660319	0	-	0.39	(0.36,0.39]	chr16	666695	64	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	75	2	5.37307	5.5882000000000005	5.80333	0.0361409	0.00231859	0.127853	0.0255753
chr2	216183929	216184029	1024057	0	+	0.39	(0.36,0.39]	chr2	111645	215	INTRON	INTRON	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	75	2	5.37307	5.5882000000000005	5.80333	0.0361409	0.00231859	0.127853	0.0255753
chr11	94457921	94458020	5108083	0	-	0.383838	(0.36,0.39]	chr11	496197	12	INTRON	INTRON	MRE11	ENSG00000020922.13	ENST00000323929.8:ENST00000407439.7:ENST00000323977.7:ENST00000393241.8	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.53855	5.587875	5.6372	0.024533	0.00432809	0.106796	0.0389438
chr4	8229456	8229556	2014329	0	+	0.67	(0.58,1]	chr4	205591	2	SS5_PROX	SS5_PROX:INTRON	SH3TC1	ENSG00000125089.18	ENST00000508641.2:ENST00000245105.8:ENST00000506360.5:ENST00000502669.5:ENST00000515682.5:ENST00000457650.7:ENST00000684698.1:ENST00000684537.1:ENST00000682056.1:ENST00000682862.1:ENST00000502350.5:ENST00000511002.6:ENST00000508183.5:ENST00000513495.5:ENST00000507801.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	179	2	3.72143	5.587669999999999	7.45391	0.00366718	2.34376e-4	0.0346803	0.00863036
chr12	102908196	102908296	5486033	0	-	0.49	(0.485,0.523]	chr12	539552	129	INTRON	INTRON	PAH	ENSG00000171759.10	ENST00000553106.6:ENST00000307000.7:ENST00000549111.5:ENST00000551988.5:ENST00000550978.6:ENST00000551337.5:ENST00000548928.1:ENST00000546844.1:ENST00000548677.2:ENST00000635500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	217	2	4.36718	5.587585000000001	6.80799	0.0023441	2.31255e-4	0.0305023	0.00500107
chr11	10258040	10258140	4996143	0	-	0.37	(0.36,0.39]	chr11	483395	637	INTRON	INTRON	SBF2	ENSG00000133812.18	ENST00000692716.1:ENST00000689940.1:ENST00000256190.13:ENST00000689128.1:ENST00000675281.2:ENST00000676387.2:ENST00000676324.2:ENST00000689258.1:ENST00000533770.6:ENST00000688417.1:ENST00000687210.1:ENST00000526353.2:ENST00000693022.1:ENST00000693201.1:ENST00000686079.1:ENST00000688206.1:ENST00000687256.1:ENST00000685217.1:ENST00000693212.1:ENST00000687300.1:ENST00000688739.1:ENST00000690806.1:ENST00000686677.1:ENST00000692068.1:ENST00000690959.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	77	2	5.31441	5.587395	5.86038	0.0174081	0.00715023	0.0901374	0.0541241
chr19	37972090	37972190	7254918	0	+	0.38	(0.36,0.39]	chr19	743663	390	INTRON	INTRON	SIPA1L3	ENSG00000105738.11	ENST00000222345.11:ENST00000476317.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	77	2	5.31441	5.587395	5.86038	0.0174081	0.00715023	0.0901374	0.0541241
chr22	32990383	32990482	7794568	0	-	0.565657	(0.523,0.58]	chr22	817470	93	INTRON	INTRON	SYN3	ENSG00000185666.15	ENST00000358763.7:ENST00000441821.5:ENST00000412575.1	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.26332	5.587295	5.91127	0.0337698	0.00111349	0.124319	0.0152496
chr8	31136670	31136769	3791518	0	+	0.40404	(0.39,0.419]	chr8	365196	38	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	75	2	5.53798	5.586914999999999	5.63585	0.025023	0.0043589	0.10758	0.0391245
chrX	120543456	120543533	8097347	0	-	0.402597	(0.39,0.419]	chrX	844246	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CUL4B	ENSG00000158290.19	ENST00000680673.1:ENST00000681253.1:ENST00000679927.1:ENST00000371322.11:ENST00000681189.1:ENST00000681080.1:ENST00000680918.1:ENST00000336592.11:ENST00000681333.1:ENST00000679405.1:ENST00000371323.3:ENST00000681206.1:ENST00000680577.1:ENST00000680324.1:ENST00000674137.11:ENST00000680165.1:ENST00000673919.1:ENST00000680457.1:ENST00000681090.1:ENST00000674073.2:ENST00000679844.1:ENST00000681908.1:ENST00000681652.1:ENST00000679432.1:ENST00000680474.1:ENST00000681864.1:ENST00000404115.8:ENST00000681869.1:ENST00000681224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	75	2	5.53798	5.586914999999999	5.63585	0.025023	0.0043589	0.10758	0.0391245
chr16	50437439	50437539	6450299	0	+	0.54	(0.523,0.58]	chr16	639795	151	INTRON	INTRON	ENSG00000260573	ENSG00000260573.4	ENST00000637635.1	lncRNA	lncRNA	lncRNA	lncRNA	0	74	2	5.44845	5.58666	5.72487	0.0163679	0.00361636	0.0875379	0.0342681
chr17	82150460	82150560	6987878	0	-	0.62	(0.58,1]	chr17	714577	147	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000419322.6:ENST00000392346.6:ENST00000582040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	71	2	5.30747	5.5865	5.86553	0.0196049	6.8352e-4	0.0955413	0.0108717
chr2	239283076	239283176	1391539	0	-	0.59	(0.58,1]	chr2	148740	315	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	241	2	4.24471	5.586445	6.92818	7.72338e-4	9.18326e-5	0.0164417	0.0025645
chr13	113333169	113333269	5753262	0	-	0.58	(0.523,0.58]	chr13	564094	67	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	1	161	2	4.36501	5.586285	6.80756	0.00236582	0.00085027500000000005	0.0306624	0.0126678
chr5	617003	617102	2378440	0	+	0.555556	(0.523,0.58]	chr5	237586	42	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.47382	5.58608	5.69834	0.0244797	0.00194036	0.106683	0.0225083
chr10	5648370	5648469	4622425	0	-	0.565657	(0.523,0.58]	chr10	441815	55	INTRON	INTRON	ASB13	ENSG00000196372.13	ENST00000357700.11:ENST00000479033.1:ENST00000459912.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	73	2	5.51247	5.58603	5.65959	0.0230387	0.0021416	0.102982	0.0240825
chr9	135836066	135836165	4431107	0	-	0.565657	(0.523,0.58]	chr9	423507	81	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.51247	5.58603	5.65959	0.0230387	0.0021416	0.102982	0.0240825
chr2	239280278	239280378	1391511	0	-	0.48	(0.45,0.485]	chr2	148740	287	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	165	2	4.78356	5.5860199999999995	6.38848	0.0059625	2.95614e-4	0.0506812	0.00601525
chr11	70535830	70535930	5059631	0	-	0.6	(0.58,1]	chr11	492663	325	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	71	2	5.50497	5.5859749999999995	5.66698	0.0102927	0.00187297	0.0684871	0.0219434
chr10	122398571	122398669	4602008	0	+	0.357143	(0.33,0.36]	chr10	440037	2	INTRON	INTRON	PLEKHA1	ENSG00000107679.15	ENST00000494222.5:ENST00000368990.8:ENST00000368989.6:ENST00000463663.6:ENST00000392799.7:ENST00000368988.5:ENST00000433307.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	84	2	4.93777	5.58582	6.23387	0.0144674	0.00810355	0.0833845	0.0602166
chrX	44898585	44898685	7871927	0	+	0.51	(0.485,0.523]	chrX	825082	242	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	160	2	4.61772	5.585725	6.55373	0.00378829	4.24382e-4	0.0396337	0.00777807
chr8	699995	700095	3932729	0	-	0.72	(0.58,1]	chr8	376054	70	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000524138.5:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	368	2	5.36234	5.58554	5.80874	3.08607e-4	4.61817e-6	0.00998901	2.97736e-4
chr17	66509268	66509368	6785498	0	+	0.53	(0.523,0.58]	chr17	684238	126	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	163	2	4.88128	5.585455	6.28963	0.00618741	1.88282e-4	0.0519442	0.00434954
chr10	131957948	131958047	4616607	0	+	0.626263	(0.58,1]	chr10	441116	21	UTR3	UTR3:EXON_MRNA	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	149	2	4.44822	5.585319999999999	6.72242	0.00121317	4.4502e-4	0.0210863	0.00806076
chr16	75236827	75236912	6644477	0	-	0.658824	(0.58,1]	chr16	664413	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000566982.1:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10:ENST00000569340.1:ENST00000564170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	149	2	4.44822	5.585319999999999	6.72242	0.00121317	4.4502e-4	0.0210863	0.00806076
chr22	45291406	45291504	7738863	0	+	0.489796	(0.485,0.523]	chr22	811371	19	INTRON	INTRON	UPK3A	ENSG00000100373.10	ENST00000216211.9:ENST00000396082.2	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.44489	5.585095	5.7253	0.0162644	0.00377098	0.0873195	0.0353672
chr1	42819303	42819402	105523	0	+	0.454545	(0.45,0.485]	chr1	12744	11	INTRON	INTRON	ERMAP	ENSG00000164010.15	ENST00000372517.8:ENST00000643061.1:ENST00000645239.1:ENST00000647120.1:ENST00000487556.6:ENST00000642150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	74	2	5.34301	5.584955	5.8269	0.0328801	0.00167585	0.122593	0.0203806
chrX	1424229	1424328	7965725	0	-	0.555556	(0.523,0.58]	chrX	834272	20	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.55012	5.58494	5.61976	0.0217068	0.00236826	0.100615	0.0259199
chr3	140958863	140958962	1585944	0	+	0.262626	[0,0.29]	chr3	167514	18	INTRON	INTRON	SLC25A36	ENSG00000114120.14	ENST00000446041.6:ENST00000324194.12:ENST00000648615.1:ENST00000393015.8:ENST00000515813.1:ENST00000507429.5:ENST00000502594.5:ENST00000453248.6:ENST00000631654.1:ENST00000513887.5:ENST00000512023.5:ENST00000512506.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	72	2	5.50928	5.58479	5.6603	0.0113106	0.00267774	0.0722887	0.0282006
chr1	245988093	245988193	700661	0	-	0.55	(0.523,0.58]	chr1	82399	3	SS5_PROX	SS5_PROX:INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000493441.5:ENST00000488153.5:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	84	2	4.90222	5.584709999999999	6.2672	0.0125132	0.00644151	0.0765738	0.0530091
chrX	38285736	38285833	8027080	0	-	0.484536	(0.45,0.485]	chrX	837436	2	CDS	CDS:EXON_MRNA:INTRON	RPGR	ENSG00000156313.15	ENST00000642395.2:ENST00000339363.7:ENST00000482855.5:ENST00000644238.1:ENST00000642170.1:ENST00000642739.1:ENST00000644337.1:ENST00000645124.1:ENST00000474584.5:ENST00000646020.1:ENST00000494707.6:ENST00000645032.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	74	2	5.51989	5.584555	5.64922	0.020599	0.00357389	0.0982852	0.0342681
chr1	21905198	21905298	422233	0	-	0.51	(0.485,0.523]	chr1	49642	85	INTRON	INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.47425	5.58451	5.69477	0.0243396	0.00203227	0.106588	0.0232814
chr16	52543839	52543939	6589828	0	-	0.32	(0.29,0.33]	chr16	658709	239	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	73	2	5.44135	5.584245	5.72714	0.0236557	0.00198096	0.105002	0.0229039
chr16	14092320	14092420	6399604	0	+	0.43	(0.419,0.45]	chr16	632160	2	SS3_PROX	SS3_PROX:INTRON	MRTFB	ENSG00000186260.17	ENST00000571589.6:ENST00000574998.5:ENST00000572400.5:ENST00000574045.5:ENST00000575537.5:ENST00000318282.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	75	2	5.44447	5.58399	5.72351	0.0364384	0.00310292	0.128173	0.0311614
chr6	2469700	2469796	2826637	0	+	0.447917	(0.419,0.45]	chr6	277328	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	GMDS-DT	ENSG00000250903.10	ENST00000657072.1:ENST00000659523.1:ENST00000659643.1:ENST00000660978.1:ENST00000691547.1:ENST00000654526.1:ENST00000670895.1:ENST00000657589.1:ENST00000607519.2:ENST00000662000.1:ENST00000655727.1:ENST00000606884.1	lncRNA	lncRNA	lncRNA	lncRNA	0	75	2	5.44447	5.58399	5.72351	0.0364384	0.00310292	0.128173	0.0311614
chr12	116120410	116120510	5512387	0	-	0.43	(0.419,0.45]	chr12	542773	85	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.55739	5.58385	5.61031	0.0310506	0.004032	0.119758	0.0371291
chr19	37219002	37219088	7252063	0	+	0.44186	(0.419,0.45]	chr19	743297	3	SS3_PROX	SS3_PROX:INTRON	ZNF383	ENSG00000188283.12	ENST00000586068.5:ENST00000585441.5:ENST00000586658.1:ENST00000590503.5:ENST00000684119.1:ENST00000589413.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	75	2	5.55739	5.58385	5.61031	0.0310506	0.004032	0.119758	0.0371291
chr11	70585029	70585129	5060123	0	-	0.64	(0.58,1]	chr11	492663	817	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	78	2	5.02314	5.583705	6.14427	0.00638322	0.00407804	0.0501889	0.0413652
chr12	46782930	46783029	5221024	0	+	0.454545	(0.45,0.485]	chr12	506670	1305	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2	lncRNA	lncRNA	lncRNA	lncRNA	1	236	2	4.97578	5.58364	6.1915	0.00161571	6.44145e-4	0.0248769	0.0104271
chr11	64145160	64145260	5049029	0	-	0.51	(0.485,0.523]	chr11	490257	184	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	77	2	5.01719	5.58363	6.15007	0.0480495	6.0909e-4	0.144601	0.0100377
chr17	4839533	4839633	6671948	0	+	0.5	(0.485,0.523]	chr17	668609	55	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	73	2	5.43453	5.58352	5.73251	0.0258944	0.00184599	0.109555	0.0217471
chr20	58687954	58688053	7498557	0	+	0.494949	(0.485,0.523]	chr20	781977	86	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1:ENST00000413559.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	0	73	2	5.55054	5.583365	5.61619	0.0215787	0.00247695	0.100612	0.0266492
chr19	5815106	5815206	7195537	0	+	0.6	(0.58,1]	chr19	733105	93	INTRON	INTRON	NRTN	ENSG00000171119.3	ENST00000303212.3	protein_coding	protein_coding	protein_coding	protein_coding	1	177	2	4.3681	5.583275	6.79845	0.00289039	3.72743e-5	0.03418	0.00131851
chr21	36389688	36389785	7617013	0	+	0.474227	(0.45,0.485]	chr21	795590	16	INTRON	INTRON	CHAF1B	ENSG00000159259.8	ENST00000314103.6:ENST00000480486.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	75	2	5.38553	5.583245	5.78096	0.0166968	0.00490471	0.0884836	0.0422077
chr22	46906894	46906993	7746460	0	+	0.464646	(0.45,0.485]	chr22	812218	117	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	75	2	5.38553	5.583245	5.78096	0.0166968	0.00490471	0.0884836	0.0422077
chr1	232963779	232963878	363666	0	+	0.414141	(0.39,0.419]	chr1	41082	20	EXON_LNCRNA	EXON_LNCRNA:INTRON	NTPCR	ENSG00000135778.12	ENST00000494689.5:ENST00000366628.10:ENST00000490807.5:ENST00000496662.5:ENST00000366627.4:ENST00000479125.5:ENST00000487953.1:ENST00000490098.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	75	2	5.49586	5.582890000000001	5.66992	0.0237738	0.00479873	0.105296	0.0416285
chr11	110125207	110125307	4937821	0	+	0.41	(0.39,0.419]	chr11	476027	314	INTRON	INTRON	ZC3H12C	ENSG00000149289.11	ENST00000278590.8	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.49586	5.582890000000001	5.66992	0.0237738	0.00479873	0.105296	0.0416285
chr1	43558725	43558825	107026	0	+	0.65	(0.58,1]	chr1	13192	44	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	311	2	3.21367	5.58262	7.95157	0.00117428	7.27296e-5	0.0158316	0.00477445
chr6	167940535	167940634	3074506	0	+	0.555556	(0.523,0.58]	chr6	298923	74	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7:ENST00000507679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	82	2	4.96714	5.58244	6.19774	0.0108948	0.0072907	0.0706366	0.0567247
chr2	73852724	73852820	833279	0	+	0.5625	(0.523,0.58]	chr2	94126	1	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	STAMBP	ENSG00000124356.17	ENST00000339566.7:ENST00000684095.1:ENST00000682847.1:ENST00000683317.1:ENST00000683036.1:ENST00000682157.1:ENST00000683349.1:ENST00000684337.1:ENST00000683247.1:ENST00000682683.1:ENST00000682329.1:ENST00000683149.1:ENST00000682851.1:ENST00000394070.7:ENST00000683728.1:ENST00000409707.6:ENST00000683518.1:ENST00000684585.1:ENST00000683434.1:ENST00000682352.1:ENST00000684697.1:ENST00000682592.1:ENST00000683718.1:ENST00000682423.1:ENST00000478946.2:ENST00000684200.1:ENST00000684355.1:ENST00000684774.1:ENST00000536064.2:ENST00000683465.1:ENST00000684716.1:ENST00000683016.1:ENST00000684174.1:ENST00000684703.1:ENST00000682799.1:ENST00000682998.1:ENST00000682379.1:ENST00000684312.1:ENST00000683852.1:ENST00000684321.1:ENST00000394073.6:ENST00000684671.1:ENST00000682848.1:ENST00000683877.1:ENST00000683530.1:ENST00000683027.1:ENST00000683304.1:ENST00000682784.1:ENST00000683205.1:ENST00000682351.1:ENST00000683818.1:ENST00000684426.1:ENST00000683582.1:ENST00000683417.1:ENST00000683594.1:ENST00000682387.1:ENST00000682747.1:ENST00000682105.1:ENST00000683928.1:ENST00000683391.1:ENST00000684758.1:ENST00000682558.1:ENST00000683902.1:ENST00000432295.7:ENST00000486458.2:ENST00000683314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	76	2	5.25403	5.582000000000001	5.90997	0.012016	0.00573579	0.0743424	0.0467736
chr1	77980322	77980422	163597	0	+	0.33	(0.29,0.33]	chr1	18749	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DNAJB4:GIPC2	ENSG00000162616.9:ENSG00000137960.6	ENST00000487931.1:ENST00000477671.2:ENST00000484662.1:ENST00000476882.1:ENST00000426517.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	73	2	5.56987	5.581965	5.59406	0.0184845	0.0029307	0.0928429	0.0298918
chr11	61759035	61759135	4862559	0	+	0.6	(0.58,1]	chr11	466004	32	INTRON	INTRON	MYRF	ENSG00000124920.14	ENST00000278836.10:ENST00000537766.1:ENST00000265460.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	153	2	4.23567	5.581925	6.92818	8.49275e-4	7.72338e-4	0.0164417	0.0126615
chr5	116303783	116303883	2512012	0	+	0.44	(0.419,0.45]	chr5	249656	1	SS5_PROX	SS5_PROX:INTRON	COMMD10	ENSG00000145781.9	ENST00000508250.5:ENST00000503424.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	75	2	5.57051	5.58183	5.59315	0.029494	0.00441471	0.116079	0.0393688
chr10	79163132	79163232	4532988	0	+	0.68	(0.58,1]	chr10	432438	6	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.36153	5.581715	5.8019	0.007984	0.00273899	0.0596361	0.028553
chr17	76121161	76121244	6975092	0	-	0.590361	(0.58,1]	chr17	711995	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EXOC7	ENSG00000182473.22	ENST00000589507.6	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.36153	5.581715	5.8019	0.007984	0.00273899	0.0596361	0.028553
chr19	6230269	6230369	7321314	0	-	0.63	(0.58,1]	chr19	756088	3	SS5_PROX	SS5_PROX:INTRON	MLLT1	ENSG00000130382.9	ENST00000252674.9	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.36153	5.581715	5.8019	0.007984	0.00273899	0.0596361	0.028553
chr11	70777757	70777857	5062059	0	-	0.47	(0.45,0.485]	chr11	492701	599	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	163	2	4.4113	5.581555	6.75181	0.00308946	8.48909e-4	0.0354967	0.0126615
chr14	95297838	95297938	6048626	0	-	0.43	(0.419,0.45]	chr14	593429	17	INTRON	INTRON	CLMN	ENSG00000165959.12	ENST00000298912.9:ENST00000555615.1:ENST00000553733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	82	2	4.87598	5.58155	6.28712	0.0768574	7.76382e-4	0.174882	0.0118807
chr6	111841976	111842076	3238810	0	-	0.51	(0.485,0.523]	chr6	313924	220	INTRON	INTRON	FYN	ENSG00000010810.17	ENST00000354650.7:ENST00000368682.7:ENST00000368678.8:ENST00000520518.5:ENST00000518295.5:ENST00000523238.5:ENST00000518630.5:ENST00000523570.5:ENST00000484067.6:ENST00000487824.2	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.39369	5.5814900000000005	5.76929	0.0275819	0.00167976	0.112782	0.0203806
chr17	28321694	28321793	6705679	0	+	0.535354	(0.523,0.58]	chr17	673093	16	INTRON	INTRON	TMEM97	ENSG00000109084.14	ENST00000226230.8:ENST00000583381.5:ENST00000582113.1:ENST00000582384.1:ENST00000336687.6	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	5.08882	5.58141	6.074	0.00906277	0.00834774	0.0637469	0.0598672
chr15	80832270	80832370	6164150	0	+	0.41	(0.39,0.419]	chr15	606634	523	INTRON	INTRON	CEMIP	ENSG00000103888.17	ENST00000220244.7:ENST00000394685.8:ENST00000356249.9	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	4.99538	5.581325	6.16727	0.0613573	9.41833e-4	0.158506	0.0135546
chr14	73377972	73378072	6003584	0	-	0.31	(0.29,0.33]	chr14	589064	106	INTRON	INTRON	NUMB	ENSG00000133961.21	ENST00000554546.5:ENST00000555238.6:ENST00000557597.5:ENST00000356296.8:ENST00000555394.5:ENST00000555859.5:ENST00000554394.5:ENST00000555307.5:ENST00000554315.5:ENST00000555987.5:ENST00000556112.5:ENST00000557774.5:ENST00000554818.5:ENST00000557031.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	76	2	5.24515	5.581205	5.91726	0.010702	0.00631714	0.0701493	0.0501889
chr15	80091115	80091215	6161988	0	+	0.4	(0.39,0.419]	chr15	606445	154	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5:ENST00000560228.5:ENST00000559835.5:ENST00000559775.5:ENST00000558688.5:ENST00000560976.5:ENST00000560392.5:ENST00000558390.5:ENST00000558272.5:ENST00000557793.1:ENST00000616533.4:ENST00000558087.5:ENST00000558997.5:ENST00000558724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	170	2	4.27183	5.581189999999999	6.89055	0.00314209	0.00148741	0.0358106	0.0186923
chr4	158172168	158172238	2358646	0	-	0.371429	(0.36,0.39]	chr4	235583	2	SS5_PROX	SS5_PROX:INTRON	GASK1B	ENSG00000164125.16	ENST00000585682.6:ENST00000296530.12:ENST00000393807.9:ENST00000589306.1:ENST00000592057.1:ENST00000587787.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	76	2	5.36211	5.581085	5.80006	0.0191255	0.00643924	0.0952349	0.0503748
chr3	52444812	52444912	1778659	0	-	0.57	(0.523,0.58]	chr3	185048	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SEMA3G	ENSG00000010319.7	ENST00000231721.7:ENST00000465657.1:ENST00000475739.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	94	2	4.60868	5.580985	6.55329	0.0226775	0.00382069	0.108193	0.0398603
chr6	36680665	36680761	2906396	0	+	0.614583	(0.58,1]	chr6	285238	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	CDKN1A	ENSG00000124762.14	ENST00000615513.4:ENST00000448526.6:ENST00000459970.1:ENST00000405375.5:ENST00000244741.10:ENST00000373711.3:ENST00000478800.1:ENST00000462537.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	71	2	5.26138	5.580965	5.90055	0.021217	6.1741e-4	0.0996078	0.0101143
chr3	48978397	48978494	1465548	0	+	0.340206	(0.33,0.36]	chr3	156688	31	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000452385.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	74	2	5.38284	5.580885	5.77893	0.0317908	0.00218403	0.121384	0.0244273
chr5	107999532	107999632	2735978	0	-	0.41	(0.39,0.419]	chr5	268845	1180	INTRON	INTRON	FBXL17	ENSG00000145743.18	ENST00000542267.7:ENST00000496714.2	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.19579	5.580875	5.96596	0.0469937	0.00156652	0.143232	0.0194594
chr17	77214799	77214897	6803122	0	+	0.622449	(0.58,1]	chr17	686684	9	UTR3	UTR3:EXON_MRNA:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	3	497	2	5.21542	5.5804	5.94538	7.71048e-5	7.22565e-6	0.00490778	4.09005e-4
chr14	54630789	54630889	5820081	0	+	0.21	[0,0.29]	chr14	569049	623	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	72	2	5.30082	5.58034	5.85986	0.0212677	0.00106877	0.0996805	0.0148869
chr19	3529599	3529697	7191594	0	+	0.581633	(0.58,1]	chr19	732249	14	INTRON	INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	71	2	5.45872	5.580315	5.70191	0.00964351	0.00211999	0.0659937	0.0239744
chr16	978253	978353	6531821	0	-	0.43	(0.419,0.45]	chr16	648726	74	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000545827.6:ENST00000570014.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	76	2	5.23407	5.580195	5.92632	0.0486006	0.00191339	0.145074	0.0223437
chr8	127204114	127204213	4067048	0	-	0.252525	[0,0.29]	chr8	387456	5	INTRON	INTRON	CASC19	ENSG00000254166.3	ENST00000641912.1:ENST00000641991.1:ENST00000641425.1:ENST00000641496.1:ENST00000641013.1:ENST00000641174.1:ENST00000641487.1:ENST00000641321.1:ENST00000641719.1:ENST00000642010.1:ENST00000641056.1:ENST00000641642.1:ENST00000641362.1:ENST00000641365.1:ENST00000642077.1:ENST00000641179.1:ENST00000642126.1:ENST00000641411.1:ENST00000641298.1:ENST00000641001.1:ENST00000641674.2:ENST00000641828.1:ENST00000641029.1:ENST00000641547.1:ENST00000642134.1:ENST00000641696.1:ENST00000641480.1:ENST00000641187.1:ENST00000641934.1:ENST00000641681.1:ENST00000641867.1:ENST00000641418.1:ENST00000641414.2:ENST00000641733.1:ENST00000642142.1:ENST00000641964.1:ENST00000641880.1:ENST00000641171.1:ENST00000641625.1:ENST00000642118.2:ENST00000642018.2:ENST00000641309.2:ENST00000641704.2:ENST00000641106.2:ENST00000663628.1:ENST00000641153.2:ENST00000641218.2:ENST00000641488.2:ENST00000641786.1:ENST00000641523.2:ENST00000641060.1	lncRNA	lncRNA	lncRNA	lncRNA	0	78	2	4.88286	5.580095	6.27733	0.041613	3.30957e-4	0.136301	0.00650092
chr14	94309435	94309535	6046267	0	-	0.4	(0.39,0.419]	chr14	593050	3	SS5_PROX	SS5_PROX:INTRON	SERPINA6	ENSG00000170099.6	ENST00000341584.4:ENST00000555056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	79	2	5.16048	5.580055	5.99963	0.0142473	0.00999413	0.0817691	0.0667545
chr17	17727857	17727957	6689314	0	+	0.54	(0.523,0.58]	chr17	671344	33	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.35124	5.579985	5.80873	0.0295772	0.00145893	0.116079	0.0184991
chr1	97158491	97158591	541643	0	-	0.47	(0.45,0.485]	chr1	62934	595	INTRON	INTRON	DPYD	ENSG00000188641.14	ENST00000370192.8	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.47648	5.57989	5.6833	0.0195193	0.0039628	0.0955413	0.0368027
chr6	158327867	158327967	3061800	0	+	0.43	(0.419,0.45]	chr6	297592	132	INTRON	INTRON	ENSG00000274023:TULP4	ENSG00000274023.1:ENSG00000130338.13	ENST00000619713.1:ENST00000367097.8:ENST00000367094.6:ENST00000616856.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	1	170	2	4.58163	5.579879999999999	6.57813	0.00629696	7.04817e-4	0.0523832	0.0111395
chr1	819913	820013	379709	0	-	0.53	(0.523,0.58]	chr1	42663	414	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000634337.2:ENST00000635509.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	74	2	5.40225	5.579835	5.75742	0.0155135	0.00404292	0.0849828	0.0371291
chr6	15433930	15434030	2858388	0	+	0.44	(0.419,0.45]	chr6	279190	232	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	171	2	4.32098	5.579815	6.83865	0.00404244	0.00139866	0.0412991	0.0179877
chr10	70130845	70130944	4705312	0	-	0.494949	(0.485,0.523]	chr10	448362	64	INTRON	INTRON	AIFM2	ENSG00000042286.15	ENST00000613322.4:ENST00000307864.3	protein_coding	protein_coding	protein_coding	protein_coding	1	160	2	4.7014	5.579665	6.45793	0.00452302	3.32408e-4	0.0436138	0.00652409
chr10	34749999	34750099	4671158	0	-	0.43	(0.419,0.45]	chr10	445543	532	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.39934	5.5795449999999995	5.75975	0.0231013	0.00646489	0.102982	0.0503748
chr12	2960753	2960853	5157691	0	+	0.51	(0.485,0.523]	chr12	501257	4	SS5_PROX	SS5_PROX:INTRON	TEAD4	ENSG00000197905.10	ENST00000358409.7:ENST00000359864.8:ENST00000540314.2:ENST00000536826.2:ENST00000543035.6:ENST00000397122.6:ENST00000443986.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	160	2	4.4145200000000004	5.579485	6.74445	0.00264613	7.5951e-4	0.032596	0.011724
chr13	26257768	26257868	5551224	0	+	0.27	[0,0.29]	chr13	547916	26	INTRON	INTRON	CDK8	ENSG00000132964.12	ENST00000536792.5:ENST00000381527.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	74	2	5.27002	5.579359999999999	5.8887	0.00739414	0.0048238	0.0573244	0.0417661
chr4	2825965	2826054	2000378	0	+	0.730337	(0.58,1]	chr4	203974	4	INTRON	INTRON	SH3BP2	ENSG00000087266.17	ENST00000503393.8:ENST00000504294.5:ENST00000508385.5:ENST00000511663.5:ENST00000512014.5:ENST00000435136.8:ENST00000511185.5:ENST00000511747.6:ENST00000356331.9:ENST00000515737.5:ENST00000515183.5:ENST00000505941.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	155	2	5.0927	5.579345	6.06599	0.00477081	5.54188e-5	0.0450109	0.00176778
chr2	235999310	235999410	1067609	0	+	0.5	(0.485,0.523]	chr2	115748	303	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5:ENST00000418654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	193	2	4.19778	5.579225	6.96067	0.00640798	5.77936e-5	0.0529785	0.00182276
chr5	37032392	37032492	2402349	0	+	0.47	(0.45,0.485]	chr5	240003	46	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	2	434	2	5.36542	5.5791900000000005	5.79296	7.4752e-4	1.3724e-5	0.0161372	6.43436e-4
chr1	44241614	44241714	459587	0	-	0.44	(0.419,0.45]	chr1	55300	3	SS5_PROX	SS5_PROX:INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	75	2	5.36395	5.579140000000001	5.79433	0.0407485	0.00262626	0.135868	0.0278348
chr20	49698781	49698881	7576024	0	-	0.33	(0.29,0.33]	chr20	791530	417	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.52772	5.57878	5.62984	0.0174273	0.00324812	0.0901531	0.0319647
chr1	248855079	248855179	709845	0	-	0.55	(0.523,0.58]	chr1	83014	3	SS5_PROX	SS5_PROX:INTRON	ZNF692	ENSG00000171163.16	ENST00000463519.5:ENST00000306601.9:ENST00000366471.7:ENST00000533927.5:ENST00000476503.5:ENST00000477070.6:ENST00000412341.6:ENST00000482023.5:ENST00000451251.5:ENST00000470787.6:ENST00000474351.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	204	2	4.59372	5.5786750000000005	6.56363	0.0030293299999999998	1.79062e-4	0.0350226	0.00418549
chr2	152337219	152337319	925483	0	+	0.46	(0.45,0.485]	chr2	103058	11	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	1	164	2	4.76856	5.57852	6.38848	0.0059625	3.08736e-4	0.0506812	0.00621118
chr13	113047837	113047936	5656113	0	+	0.717172	(0.58,1]	chr13	555180	6	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	74	2	5.20223	5.578385	5.95454	0.0059453	0.00411607	0.0506158	0.0374453
chr8	10767710	10767809	3935768	0	-	0.646465	(0.58,1]	chr8	376214	14	INTRON	INTRON	PINX1	ENSG00000254093.9	ENST00000314787.8:ENST00000519088.5:ENST00000524114.5:ENST00000523559.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	79	2	4.76284	5.578365	6.39389	0.0471737	1.38027e-4	0.143232	0.00347229
chr18	12430949	12431049	7020152	0	+	0.4	(0.39,0.419]	chr18	717086	4	SS3_PROX	SS3_PROX:INTRON	PRELID3A	ENSG00000141391.14	ENST00000336990.8:ENST00000590956.5:ENST00000440960.6:ENST00000589565.1:ENST00000592149.5:ENST00000587735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	75	2	5.28643	5.57835	5.87027	0.041475	0.00198333	0.136301	0.0229039
chr14	75045775	75045875	6008805	0	-	0.43	(0.419,0.45]	chr14	589816	29	INTRON	INTRON	MLH3	ENSG00000119684.16	ENST00000380968.6:ENST00000355774.7:ENST00000553713.5:ENST00000556257.5:ENST00000556453.5:ENST00000555144.5:ENST00000555499.1:ENST00000555671.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	77	2	5.30548	5.578340000000001	5.8512	0.0201381	0.00792071	0.0973365	0.057762
chr9	36666860	36666957	4148063	0	+	0.56701	(0.523,0.58]	chr9	394597	9	INTRON	INTRON	MELK	ENSG00000165304.8	ENST00000543751.5:ENST00000536860.5:ENST00000541717.4:ENST00000536329.5:ENST00000627766.2:ENST00000298048.7:ENST00000536987.5:ENST00000545008.5:ENST00000626154.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	75	2	5.30515	5.57801	5.85087	0.0132767	0.00509102	0.0787251	0.0433513
chr15	50600882	50600981	6255135	0	-	0.414141	(0.39,0.419]	chr15	616328	12	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5	protein_coding	protein_coding	protein_coding	protein_coding	0	86	2	4.69798	5.57799	6.458	0.088901	4.39359e-4	0.183874	0.00798319
chr1	84079070	84079170	172146	0	+	0.4	(0.39,0.419]	chr1	19037	3	INTRON	INTRON	PRKACB	ENSG00000142875.20	ENST00000370689.6:ENST00000370688.7	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.45246	5.577835	5.70321	0.0226065	0.00529344	0.102982	0.044517
chr5	31456438	31456538	2629369	0	-	0.4	(0.39,0.419]	chr5	260876	44	INTRON	INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000505601.5:ENST00000507174.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	77	2	5.09906	5.577375	6.05569	0.0535378	0.0012512	0.150319	0.0166412
chr11	33307710	33307810	4837992	0	+	0.35	(0.33,0.36]	chr11	462597	198	INTRON	INTRON	HIPK3	ENSG00000110422.12	ENST00000525975.5:ENST00000303296.9:ENST00000379016.7:ENST00000456517.2	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.34082	5.577365	5.81391	0.0338211	0.00200357	0.124319	0.0230381
chr18	2684705	2684805	7001381	0	+	0.35	(0.33,0.36]	chr18	715609	102	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	74	2	5.34082	5.577365	5.81391	0.0338211	0.00200357	0.124319	0.0230381
chr5	10708071	10708171	2612117	0	-	0.32	(0.29,0.33]	chr5	260254	241	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	75	2	5.29626	5.577205	5.85815	0.011855	0.005619	0.0740271	0.0462026
chr10	18554569	18554669	4642274	0	-	0.42	(0.419,0.45]	chr10	443321	22	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	4.78575	5.57644	6.36713	0.0224633	0.00893106	0.108193	0.0637469
chr19	45265724	45265824	7272260	0	+	0.62	(0.58,1]	chr19	746870	1	SS3_PROX	SS3_PROX:INTRON	MARK4	ENSG00000007047.16	ENST00000587566.5:ENST00000262891.9:ENST00000300843.8:ENST00000592762.5:ENST00000590909.1:ENST00000588533.5:ENST00000588621.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	73	2	5.25731	5.57636	5.89541	0.0066708	0.00358178	0.0540577	0.0342681
chr9	114074459	114074555	4373773	0	-	0.322917	(0.29,0.33]	chr9	418049	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AMBP	ENSG00000106927.12	ENST00000265132.8:ENST00000540645.5:ENST00000466610.6:ENST00000603230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	415	2	5.21326	5.576155	5.93905	7.82133e-4	7.63124e-6	0.0165897	4.24523e-4
chr5	1326730	1326829	2609082	0	-	0.525253	(0.523,0.58]	chr5	259719	4	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	212	2	4.10187	5.576025	7.05018	0.00148008	0.00049461800000000005	0.023604	0.00865935
chr7	127707647	127707747	3468789	0	+	0.36	(0.33,0.36]	chr7	335368	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SND1	ENSG00000197157.11	ENST00000354725.8	protein_coding	protein_coding	protein_coding	protein_coding	2	221	2	3.99767	5.575435	7.1532	0.00152349	8.5166e-4	0.0240691	0.0126825
chrX	1396748	1396840	7830128	0	+	0.413043	(0.39,0.419]	chrX	822051	1	SS5_PROX	SS5_PROX:INTRON	LINC00106	ENSG00000236871.7	ENST00000434938.7	lncRNA	lncRNA	lncRNA	lncRNA	1	203	2	4.09144	5.575395	7.05935	0.00977424	8.30081e-5	0.0666887	0.00237656
chr1	21620847	21620946	419674	0	-	0.525253	(0.523,0.58]	chr1	49003	4	INTRON	INTRON	RAP1GAP	ENSG00000076864.21	ENST00000374765.9:ENST00000471600.6:ENST00000374761.6:ENST00000542643.6:ENST00000611549.4:ENST00000495204.5:ENST00000374757.7:ENST00000317967.11:ENST00000447293.5:ENST00000482984.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	73	2	5.49322	5.575355	5.65749	0.0182707	0.00324246	0.0921579	0.0319521
chr16	87738028	87738128	6656461	0	-	0.57	(0.523,0.58]	chr16	665892	70	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	73	2	5.49322	5.575355	5.65749	0.0182707	0.00324246	0.0921579	0.0319521
chr8	96908081	96908181	3872566	0	+	0.51	(0.485,0.523]	chr8	371378	277	INTRON	INTRON	CPQ	ENSG00000104324.16	ENST00000220763.10	protein_coding	protein_coding	protein_coding	protein_coding	1	200	2	4.50903	5.57533	6.64163	0.00354996	1.50187e-4	0.0382839	0.0036849
chr2	3293205	3293305	1081039	0	-	0.59	(0.58,1]	chr2	117633	105	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	70	2	5.39546	5.57526	5.75506	0.0168207	9.38062e-4	0.0884836	0.0135546
chr5	881668	881766	2608192	0	-	0.632653	(0.58,1]	chr5	259472	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	70	2	5.39546	5.57526	5.75506	0.0168207	9.38062e-4	0.0884836	0.0135546
chr13	60162786	60162886	5723186	0	-	0.45	(0.419,0.45]	chr13	561398	294	INTRON	INTRON	DIAPH3	ENSG00000139734.19	ENST00000400324.9:ENST00000377908.6:ENST00000400319.5:ENST00000400320.5:ENST00000267215.8	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.32195	5.575215	5.82848	0.0431627	0.00242141	0.138403	0.0261589
chr6	24231982	24232082	3109062	0	-	0.29	[0,0.29]	chr6	301412	265	INTRON	INTRON	DCDC2	ENSG00000146038.12	ENST00000378454.8	protein_coding	protein_coding	protein_coding	protein_coding	0	94	2	4.54061	5.57521	6.60981	0.0235212	0.00174003	0.110758	0.0258448
chr11	70745082	70745182	5061732	0	-	0.47	(0.45,0.485]	chr11	492701	272	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	75	2	5.33781	5.574955	5.8121	0.0158765	0.0054758	0.0859576	0.0454065
chr9	20602766	20602866	4286440	0	-	0.37	(0.36,0.39]	chr9	409535	1001	INTRON	INTRON	MLLT3	ENSG00000171843.17	ENST00000380338.9:ENST00000630269.2:ENST00000475957.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	74	2	5.4536	5.574669999999999	5.69574	0.0321864	0.00299965	0.121593	0.030427
chr14	68900761	68900861	5999347	0	-	0.64	(0.58,1]	chr14	588706	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	199	2	3.9405	5.57465	7.2088	5.32484e-4	4.11273e-4	0.0116246	0.00913375
chr9	124491528	124491628	4402638	0	-	0.66	(0.58,1]	chr9	419810	3	SS3_PROX	SS3_PROX:INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	1	148	2	4.8147	5.574535	6.33437	0.00276493	1.38991e-4	0.0332418	0.00348143
chr10	14555915	14556015	4633214	0	-	0.52	(0.485,0.523]	chr10	442801	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FAM107B	ENSG00000065809.14	ENST00000181796.7:ENST00000622567.4:ENST00000468747.5:ENST00000378467.8:ENST00000487335.5:ENST00000378465.7:ENST00000378458.6:ENST00000478076.5:ENST00000378462.5:ENST00000492700.5:ENST00000479731.5:ENST00000468492.5:ENST00000452706.6:ENST00000475786.5:ENST00000488576.5:ENST00000442012.5:ENST00000482277.5:ENST00000472095.5:ENST00000471815.5:ENST00000464952.5:ENST00000495292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	219	2	4.48818	5.5745249999999995	6.66087	0.00309962	1.60071e-4	0.0355173	0.00386366
chr19	18509523	18509623	7348291	0	-	0.59	(0.58,1]	chr19	761503	337	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	189	2	4.75494	5.574415	6.39389	0.00123949	1.38027e-4	0.0214143	0.00347229
chr16	85231365	85231465	6515382	0	+	0.47	(0.45,0.485]	chr16	646377	36	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	208	2	4.58109	5.574305	6.56752	0.0034512	2.2698e-4	0.037649	0.00495264
chr16	89325447	89325547	6660069	0	-	0.38	(0.36,0.39]	chr16	666683	52	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	167	2	4.59672	5.573980000000001	6.55124	0.0055566	6.23025e-4	0.049265	0.0101764
chr2	215423049	215423149	1368539	0	-	0.18	[0,0.29]	chr2	145763	3	SS5_PROX	SS5_PROX:INTRON	FN1	ENSG00000115414.21	ENST00000421182.5:ENST00000323926.10:ENST00000336916.8:ENST00000357867.8:ENST00000359671.5:ENST00000443816.5:ENST00000446046.5:ENST00000354785.11:ENST00000432072.6:ENST00000356005.8:ENST00000426059.1	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.51146	5.57365	5.63584	0.0147753	0.00193639	0.0829204	0.0225083
chr1	201397800	201397896	642199	0	-	0.479167	(0.45,0.485]	chr1	75864	6	INTRON	INTRON	LAD1	ENSG00000159166.15	ENST00000391967.7:ENST00000367313.4:ENST00000631576.1:ENST00000633953.1	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.46558	5.573565	5.68155	0.0273644	0.00241241	0.112372	0.0261086
chr9	94846942	94847042	4188450	0	+	0.47	(0.45,0.485]	chr9	398069	365	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000277198.6:ENST00000297979.9:ENST00000424143.5	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.46558	5.573565	5.68155	0.0273644	0.00241241	0.112372	0.0261086
chr1	44511829	44511929	113121	0	+	0.45	(0.419,0.45]	chr1	14018	921	INTRON	INTRON	RNF220	ENSG00000187147.18	ENST00000355387.6:ENST00000361799.7:ENST00000372247.6	protein_coding	protein_coding	protein_coding	protein_coding	1	297	2	2.81936	5.5735149999999996	8.32767	0.0405181	2.67684e-4	0.145945	0.00927457
chr17	82026498	82026598	6815526	0	+	0.61	(0.58,1]	chr17	688714	2	SS3_PROX	SS3_PROX:INTRON	LRRC45	ENSG00000169683.8	ENST00000306688.8	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.41094	5.57348	5.73602	0.00904546	0.00240622	0.0637469	0.0261006
chr2	149618532	149618632	920131	0	+	0.49	(0.485,0.523]	chr2	102788	241	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	4	335	2	4.45192	5.5734	6.69488	0.00290687	5.46639e-5	0.0342042	0.00175188
chr6	144530851	144530951	3022364	0	+	0.38	(0.36,0.39]	chr6	295375	4	SS3_PROX	SS3_PROX:INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.14958	5.5733250000000005	5.99707	0.0493212	0.00143949	0.146207	0.0183435
chr1	36249803	36249903	92036	0	+	0.42	(0.419,0.45]	chr1	10759	240	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	1	169	2	4.53313	5.573259999999999	6.61339	0.0059347	8.02103e-4	0.0506158	0.0121806
chr17	40031720	40031794	6898939	0	-	0.581081	(0.58,1]	chr17	700958	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MED24	ENSG00000008838.21	ENST00000394126.5:ENST00000356271.7:ENST00000394128.7:ENST00000394127.6:ENST00000535508.6:ENST00000501516.7:ENST00000535071.6:ENST00000580885.5:ENST00000578901.1:ENST00000584077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	72	2	5.11355	5.57313	6.03271	0.0271806	4.18183e-4	0.112113	0.00770005
chr7	129756036	129756131	3479558	0	+	0.526316	(0.523,0.58]	chr7	336271	10	UTR3	UTR3:EXON_MRNA	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000393230.6:ENST00000353868.5	protein_coding	protein_coding	protein_coding	protein_coding	2	219	2	3.75796	5.573095	7.38823	0.00133135	7.573e-4	0.0173248	0.0162522
chr7	47351336	47351435	3587304	0	-	0.50505	(0.485,0.523]	chr7	346030	46	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	159	2	4.66851	5.573055	6.4776	0.00436205	3.66019e-4	0.0427656	0.00700609
chr2	134237006	134237106	896601	0	+	0.37	(0.36,0.39]	chr2	101196	1095	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	74	2	5.56654	5.57301	5.57948	0.0272676	0.00393844	0.112327	0.0367306
chr17	749532	749622	6824483	0	-	0.555556	(0.523,0.58]	chr17	689920	3	SS5_PROX	SS5_PROX:INTRON	GEMIN4	ENSG00000179409.11	ENST00000319004.6:ENST00000437269.1:ENST00000573482.5:ENST00000570364.5:ENST00000576383.1:ENST00000574958.1	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.16969	5.572744999999999	5.9758	0.0387762	9.36996e-4	0.131324	0.0135546
chr2	61226467	61226566	1155177	0	-	0.323232	(0.29,0.33]	chr2	126499	28	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000463046.5:ENST00000472706.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	160	2	4.7005	5.57269	6.44488	0.00411483	3.49746e-4	0.0414433	0.00676009
chr12	123654225	123654324	5347073	0	+	0.393939	(0.39,0.419]	chr12	522778	11	INTRON	INTRON	GTF2H3	ENSG00000111358.14	ENST00000618160.4:ENST00000542279.5:ENST00000543341.7:ENST00000228955.11:ENST00000538845.5:ENST00000539994.5:ENST00000537695.5:ENST00000536375.5:ENST00000543415.5:ENST00000538533.5:ENST00000543154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	75	2	5.24182	5.57235	5.90288	0.0441194	0.00183094	0.140174	0.0216571
chr7	218455	218555	3305839	0	+	0.68	(0.58,1]	chr7	320161	91	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.54978	5.572125	5.59447	0.0117666	0.00165911	0.0737098	0.0202545
chr10	18553170	18553270	4642260	0	-	0.42	(0.419,0.45]	chr10	443321	8	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.35317	5.572025	5.79088	0.022052	0.00714797	0.101502	0.0541241
chr10	79164630	79164730	4533003	0	+	0.44	(0.419,0.45]	chr10	432438	21	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.35317	5.572025	5.79088	0.022052	0.00714797	0.101502	0.0541241
chr10	46807403	46807502	4484757	0	+	0.484848	(0.45,0.485]	chr10	428921	51	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000688259.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	200	2	3.77245	5.57188	7.37131	0.0149038	2.08874e-5	0.0834418	8.65092e-4
chr9	127565925	127566025	4412163	0	-	0.53	(0.523,0.58]	chr9	420491	43	INTRON	INTRON	NIBAN2	ENSG00000136830.12	ENST00000373314.7:ENST00000373312.4:ENST00000478917.1:ENST00000468379.1:ENST00000484348.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	74	2	5.35452	5.57188	5.78924	0.0147166	0.00453096	0.0826843	0.0400651
chr16	85388236	85388336	6516953	0	+	0.51	(0.485,0.523]	chr16	646391	289	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	4.8987	5.571775	6.24485	0.0129327	0.00665813	0.0778105	0.0540577
chr11	65429363	65429463	4871635	0	+	0.48	(0.45,0.485]	chr11	468177	67	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	32	5928	2	5.42891	5.571645	5.71438	5.91986e-5	2.51242e-7	0.00427737	4.20683e-5
chr19	35003724	35003824	7244897	0	+	0.64	(0.58,1]	chr19	742073	5	INTRON	INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	85	2	4.74346	5.571555	6.39965	0.0121457	0.00241374	0.0754623	0.0309229
chr22	23773973	23774072	7693460	0	+	0.585859	(0.58,1]	chr22	805203	6	INTRON	INTRON	MMP11	ENSG00000099953.10	ENST00000465385.5:ENST00000477567.5:ENST00000489582.5:ENST00000428253.1:ENST00000465730.1:ENST00000215743.8:ENST00000437086.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	85	2	4.74346	5.571555	6.39965	0.0121457	0.00241374	0.0754623	0.0309229
chr12	16536060	16536160	5179449	0	+	0.51	(0.485,0.523]	chr12	504097	890	INTRON	INTRON	MGST1	ENSG00000008394.13	ENST00000539036.5:ENST00000538857.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	74	2	5.17012	5.571165	5.97221	0.038581	9.86421e-4	0.131324	0.0140716
chr6	159711729	159711829	3300583	0	-	0.49	(0.485,0.523]	chr6	319519	185	INTRON	INTRON	SOD2	ENSG00000112096.19	ENST00000546087.5:ENST00000545162.5:ENST00000535561.5:ENST00000537657.5:ENST00000401980.3	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.17012	5.571165	5.97221	0.038581	9.86421e-4	0.131324	0.0140716
chr3	172671688	172671788	1959184	0	-	0.33	(0.29,0.33]	chr3	199166	232	INTRON	INTRON	NCEH1	ENSG00000144959.11	ENST00000475381.7:ENST00000538775.5:ENST00000543711.5:ENST00000424772.2:ENST00000421723.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	74	2	5.34562	5.571070000000001	5.79652	0.0131751	0.00501126	0.0785398	0.0429092
chr5	176457599	176457699	2595910	0	+	0.33	(0.29,0.33]	chr5	257577	35	INTRON	INTRON	FAF2	ENSG00000113194.13	ENST00000510730.5:ENST00000261942.7:ENST00000510446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	74	2	5.34562	5.571070000000001	5.79652	0.0131751	0.00501126	0.0785398	0.0429092
chr15	63833721	63833821	6296840	0	-	0.61	(0.58,1]	chr15	620556	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1:ENST00000558532.1:ENST00000560462.1:ENST00000560316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	77	2	5.02314	5.570895	6.11865	0.00638322	0.00429384	0.0501889	0.042386
chr4	78428994	78429094	2069622	0	+	0.47	(0.45,0.485]	chr4	211346	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	FRAS1	ENSG00000138759.20	ENST00000512123.4:ENST00000682513.1:ENST00000684159.1:ENST00000325942.11:ENST00000510944.3	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.06138	5.57064	6.0799	0.0492008	8.68466e-4	0.146142	0.0128564
chr5	83291906	83292006	2477414	0	+	0.28	[0,0.29]	chr5	246947	327	INTRON	INTRON	XRCC4	ENSG00000152422.16	ENST00000282268.7:ENST00000338635.10:ENST00000396027.9:ENST00000542685.5:ENST00000511817.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	71	2	5.3888	5.570494999999999	5.75219	0.0183035	0.00142668	0.0922556	0.0182112
chr3	66035895	66035995	1815841	0	-	0.52	(0.485,0.523]	chr3	187318	268	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	160	2	4.33291	5.57045	6.80799	0.0023441	9.5504e-4	0.0305023	0.0137043
chr1	93454400	93454500	185676	0	+	0.38	(0.36,0.39]	chr1	20160	57	INTRON	INTRON	FNBP1L	ENSG00000137942.18	ENST00000271234.13:ENST00000260506.12:ENST00000370253.6	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.53855	5.570425	5.6023	0.0258522	0.00432809	0.109555	0.0389438
chr4	48411034	48411134	2040706	0	+	0.39	(0.36,0.39]	chr4	208491	160	INTRON	INTRON	SLAIN2	ENSG00000109171.15	ENST00000264313.11:ENST00000512093.5:ENST00000510595.1	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.53855	5.570425	5.6023	0.0258522	0.00432809	0.109555	0.0389438
chr1	48225393	48225492	120953	0	+	0.454545	(0.45,0.485]	chr1	15165	2	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	73	2	5.56203	5.570285	5.57854	0.0230065	0.00322991	0.102982	0.0319521
chr22	31589146	31589246	7714595	0	+	0.46	(0.45,0.485]	chr22	807261	3	SS3_PROX	SS3_PROX:INTRON	SFI1	ENSG00000198089.16	ENST00000540643.5:ENST00000432498.5:ENST00000443011.5:ENST00000400288.7:ENST00000400289.5:ENST00000382162.7:ENST00000524296.5:ENST00000452250.5:ENST00000417682.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	73	2	5.56203	5.570285	5.57854	0.0230065	0.00322991	0.102982	0.0319521
chr3	31939670	31939770	1729990	0	-	0.48	(0.45,0.485]	chr3	179055	203	INTRON	INTRON	OSBPL10	ENSG00000144645.15	ENST00000396556.7:ENST00000438237.6:ENST00000480671.5:ENST00000466604.5:ENST00000479173.1:ENST00000463504.5:ENST00000452791.1:ENST00000465626.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	73	2	5.56203	5.570285	5.57854	0.0230065	0.00322991	0.102982	0.0319521
chr3	99929519	99929619	1518242	0	+	0.49	(0.485,0.523]	chr3	161648	1111	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	77	2	4.96239	5.570045	6.1777	0.0518747	5.64449e-4	0.148503	0.00950156
chr22	48542344	48542443	7749687	0	+	0.545455	(0.523,0.58]	chr22	812267	523	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.44845	5.57001	5.69157	0.0172851	0.00361636	0.0897247	0.0342681
chr9	7128736	7128835	4118691	0	+	0.525253	(0.523,0.58]	chr9	392000	1	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000381306.7:ENST00000381309.8:ENST00000428870.6:ENST00000420847.2:ENST00000490806.5:ENST00000466673.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	73	2	5.44845	5.57001	5.69157	0.0172851	0.00361636	0.0897247	0.0342681
chr9	85807526	85807625	4174098	0	+	0.454545	(0.45,0.485]	chr9	396933	10	INTRON	INTRON	ENSG00000165121	ENSG00000165121.12	ENST00000637846.2:ENST00000692899.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	161	2	4.55802	5.5697849999999995	6.58155	0.00421879	5.63543e-4	0.0421633	0.00950156
chr11	8622319	8622418	4986470	0	-	0.40404	(0.39,0.419]	chr11	482516	1	SS5_PROX	SS5_PROX:INTRON	TRIM66	ENSG00000166436.17	ENST00000402157.7:ENST00000646038.2:ENST00000481014.6:ENST00000530502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	74	2	5.37172	5.56975	5.76778	0.0367885	0.0025422	0.129052	0.0271978
chrX	7992184	7992284	7838597	0	+	0.41	(0.39,0.419]	chrX	822347	624	INTRON	INTRON	ENSG00000285679	ENSG00000285679.2	ENST00000659022.1:ENST00000655333.1	lncRNA	lncRNA	lncRNA	lncRNA	0	74	2	5.37172	5.56975	5.76778	0.0367885	0.0025422	0.129052	0.0271978
chr10	45986739	45986839	4484353	0	+	0.3	(0.29,0.33]	chr10	428861	9	INTRON	INTRON	TIMM23	ENSG00000265354.4	ENST00000580018.4	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.27054	5.569735	5.86893	0.0308815	0.00137721	0.119556	0.0178071
chr1	17677382	17677482	54985	0	+	0.58	(0.523,0.58]	chr1	5603	124	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	265	2	3.90009	5.569345	7.2386	0.00494645	2.29668e-5	0.046078	9.29664e-4
chr1	148604832	148604931	582787	0	-	0.30303	(0.29,0.33]	chr1	67245	58	INTRON	INTRON	NBPF14	ENSG00000270629.7	ENST00000606877.2	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.43954	5.56919	5.69884	0.0155382	0.00401582	0.0849828	0.0371286
chr15	52775406	52775505	6267272	0	-	0.434343	(0.419,0.45]	chr15	617751	172	INTRON	INTRON	ONECUT1	ENSG00000169856.9	ENST00000305901.7:ENST00000561401.3:ENST00000560699.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	219	2	4.54217	5.56882	6.59547	0.00489639	3.45753e-4	0.0457614	0.00672667
chr11	70539030	70539130	5059663	0	-	0.5	(0.485,0.523]	chr11	492663	357	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	77	2	5.14248	5.56861	5.99474	0.0103305	0.00761903	0.0684871	0.0561937
chr22	17828081	17828181	7757818	0	-	0.59	(0.58,1]	chr22	813059	3	SS3_PROX	SS3_PROX:INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000498573.5:ENST00000578984.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	70	2	5.30747	5.568555	5.82964	0.0196049	7.58111e-4	0.0955413	0.0117078
chr19	46978391	46978491	7275357	0	+	0.55	(0.523,0.58]	chr19	747275	406	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	194	2	4.34083	5.56832	6.79581	0.00492048	8.98003e-5	0.0458505	0.00252158
chr4	78137668	78137767	2066670	0	+	0.424242	(0.419,0.45]	chr4	211144	657	INTRON	INTRON	FRAS1	ENSG00000138759.20	ENST00000512123.4:ENST00000682513.1:ENST00000684159.1:ENST00000508900.2:ENST00000325942.11:ENST00000502446.6:ENST00000683711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	88	2	4.62273	5.5683050000000005	6.51388	0.103601	4.29619e-4	0.197541	0.00783248
chr13	113211880	113211980	5657326	0	+	0.64	(0.58,1]	chr13	555523	14	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000488558.2:ENST00000375440.9:ENST00000474116.5:ENST00000494985.5:ENST00000463426.5:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	70	2	5.50497	5.568075	5.63118	0.0109983	0.00187297	0.0708586	0.0219434
chr16	25138281	25138380	6426861	0	+	0.606061	(0.58,1]	chr16	635895	54	INTRON	INTRON	LCMT1	ENSG00000205629.12	ENST00000380962.9:ENST00000564011.5:ENST00000380966.8:ENST00000399069.8:ENST00000577157.1:ENST00000570981.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	70	2	5.50497	5.568075	5.63118	0.0109983	0.00187297	0.0708586	0.0219434
chr1	156211120	156211219	251502	0	+	0.464646	(0.45,0.485]	chr1	29578	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SLC25A44	ENSG00000160785.14	ENST00000423538.6:ENST00000684582.1:ENST00000359511.5:ENST00000469537.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	74	2	5.20906	5.568055	5.92705	0.0399616	0.00129636	0.133954	0.0170746
chr16	85236165	85236265	6515430	0	+	0.69	(0.58,1]	chr16	646377	84	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	99	2	4.3962	5.567765	6.73933	0.0250928	0.00116939	0.114418	0.0206836
chr17	36512157	36512257	6889669	0	-	0.44	(0.419,0.45]	chr17	699507	1	SS5_PROX	SS5_PROX:INTRON	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000612097.1:ENST00000620413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	206	2	4.12664	5.566705000000001	7.00677	0.0100106	1.1216e-4	0.0675109	0.00298349
chr6	166333492	166333592	3301408	0	-	0.56	(0.523,0.58]	chr6	319660	17	INTRON	INTRON	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000478705.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	72	2	5.47382	5.566705	5.65959	0.0244797	0.0021416	0.106683	0.0240825
chr2	237597927	237598027	1388232	0	-	0.53	(0.523,0.58]	chr2	148344	66	INTRON	INTRON	RAB17	ENSG00000124839.13	ENST00000487008.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	105	2	4.34118	5.56656	6.79194	0.0372357	0.00243746	0.139793	0.0311222
chr10	80495479	80495579	4535534	0	+	0.56	(0.523,0.58]	chr10	432713	58	INTRON	INTRON	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000481124.5:ENST00000372158.6:ENST00000372157.6:ENST00000469149.1:ENST00000372164.7:ENST00000341863.10:ENST00000372156.5:ENST00000616406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	72	2	5.43411	5.566225	5.69834	0.026041	0.00194036	0.109673	0.0225083
chr2	239370102	239370202	1392413	0	-	0.54	(0.523,0.58]	chr2	148759	168	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	72	2	5.43411	5.566225	5.69834	0.026041	0.00194036	0.109673	0.0225083
chr7	75114028	75114128	3394986	0	+	0.36	(0.33,0.36]	chr7	327805	11	INTRON	INTRON	GTF2IRD2B	ENSG00000174428.19	ENST00000651028.1:ENST00000620662.1:ENST00000472837.7:ENST00000619142.4:ENST00000418185.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	73	2	5.46338	5.56598	5.66858	0.0281891	0.0028562	0.114124	0.0294256
chr12	93385562	93385662	5290343	0	+	0.36	(0.33,0.36]	chr12	514886	4	SS5_PROX	SS5_PROX:INTRON	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5:ENST00000550056.5:ENST00000547014.5:ENST00000548662.5:ENST00000546925.1	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.50203	5.565935	5.62984	0.0265895	0.00313405	0.111433	0.0312116
chr17	19666144	19666243	6696200	0	+	0.50505	(0.485,0.523]	chr17	672344	7	INTRON	INTRON	ALDH3A2	ENSG00000072210.19	ENST00000581518.6:ENST00000673136.1:ENST00000672465.1:ENST00000631291.2:ENST00000672357.1:ENST00000579855.5:ENST00000176643.11:ENST00000339618.8:ENST00000672564.1:ENST00000671878.1:ENST00000582991.6:ENST00000395575.7:ENST00000672487.1:ENST00000630662.2:ENST00000472059.6:ENST00000672567.1:ENST00000672709.1:ENST00000672059.1:ENST00000673472.1:ENST00000672608.1:ENST00000476965.5:ENST00000574078.3:ENST00000673064.1:ENST00000673516.1:ENST00000672591.1:ENST00000571163.2:ENST00000573947.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	158	2	4.63485	5.56593	6.49701	0.00420849	4.03769e-4	0.0421454	0.00752123
chr16	16183330	16183430	6556704	0	-	0.62	(0.58,1]	chr16	653131	4	SS3_PROX	SS3_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	146	2	4.69024	5.565915	6.44159	0.00221069	2.07711e-4	0.0295736	0.00464072
chr20	5604740	5604840	7519886	0	-	0.52	(0.485,0.523]	chr20	785113	3	SS3_PROX	SS3_PROX:INTRON	GPCPD1	ENSG00000125772.14	ENST00000379019.7:ENST00000481690.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	75	2	5.25048	5.565815	5.88115	0.012541	0.0059614	0.0761905	0.0479866
chr7	1016226	1016325	3526385	0	-	0.646465	(0.58,1]	chr7	340572	57	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	71	2	5.36153	5.565435	5.76934	0.00849371	0.00273899	0.0617717	0.028553
chr1	178164467	178164566	287245	0	+	0.414141	(0.39,0.419]	chr1	32929	386	INTRON	INTRON	RASAL2	ENSG00000075391.18	ENST00000367649.8:ENST00000465723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	75	2	5.19579	5.565275	5.93476	0.0469937	0.00169249	0.143232	0.0204799
chr16	85387237	85387337	6516943	0	+	0.64	(0.58,1]	chr16	646391	279	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	4.81862	5.565275	6.31193	0.0102696	0.00289626	0.0678072	0.03418
chr16	85509185	85509285	6518163	0	+	0.63	(0.58,1]	chr16	646391	1499	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	4.81862	5.565275	6.31193	0.0102696	0.00289626	0.0678072	0.03418
chr10	127428999	127429099	4612238	0	+	0.6	(0.58,1]	chr10	440909	26	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2	protein_coding	protein_coding	protein_coding	protein_coding	1	153	2	5.06433	5.5651600000000006	6.06599	0.00477081	6.09512e-5	0.0450109	0.0018918
chr11	17910603	17910703	5014343	0	-	0.37	(0.36,0.39]	chr11	484610	320	INTRON	INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528369.5:ENST00000528200.5:ENST00000529440.5:ENST00000529151.5:ENST00000532546.5:ENST00000525920.5:ENST00000532265.5:ENST00000533241.1:ENST00000525168.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	225	2	4.28172	5.564814999999999	6.84791	0.00329741	4.24237e-4	0.0368376	0.00777807
chr19	4492135	4492235	7193757	0	+	0.52	(0.485,0.523]	chr19	732769	3	SS5_PROX	SS5_PROX:INTRON	HDGFL2	ENSG00000167674.15	ENST00000616600.5:ENST00000621835.4:ENST00000589486.5:ENST00000615225.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	72	2	5.43453	5.56465	5.69477	0.0258944	0.00203227	0.109555	0.0232814
chr2	98471177	98471277	855623	0	+	0.49	(0.485,0.523]	chr2	96866	257	INTRON	INTRON	INPP4A	ENSG00000040933.16	ENST00000409016.8:ENST00000409851.8:ENST00000074304.9:ENST00000409463.5:ENST00000409540.7	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.43453	5.56465	5.69477	0.0258944	0.00203227	0.109555	0.0232814
chr13	32171869	32171969	5562367	0	+	0.5	(0.485,0.523]	chr13	548646	2	INTRON	INTRON	FRY	ENSG00000073910.23	ENST00000645780.1:ENST00000647500.1:ENST00000642040.1:ENST00000542859.6	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.5129	5.564545	5.61619	0.0229047	0.00247695	0.102982	0.0266492
chrX	1424726	1424825	7965730	0	-	0.494949	(0.485,0.523]	chrX	834272	25	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.5129	5.564545	5.61619	0.0229047	0.00247695	0.102982	0.0266492
chr2	159574043	159574143	1290510	0	-	0.53	(0.523,0.58]	chr2	138666	178	INTRON	INTRON	BAZ2B	ENSG00000123636.19	ENST00000392782.5:ENST00000392783.7:ENST00000541068.6:ENST00000437839.5:ENST00000483316.1:ENST00000552327.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	72	2	5.55012	5.56446	5.5788	0.0217068	0.00262418	0.100615	0.0278348
chr9	123256646	123256746	4396229	0	-	0.56	(0.523,0.58]	chr9	419553	193	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	73	2	5.21727	5.5642700000000005	5.91127	0.0361597	0.00111349	0.127853	0.0152496
chr4	102653194	102653294	2293719	0	-	0.45	(0.419,0.45]	chr4	230637	21	INTRON	INTRON	MANBA	ENSG00000109323.11	ENST00000644159.1:ENST00000647097.2:ENST00000514430.5:ENST00000646727.1:ENST00000644545.1:ENST00000646311.1:ENST00000647129.1:ENST00000642252.1:ENST00000645558.1:ENST00000645348.1:ENST00000505239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	74	2	5.40477	5.56414	5.72351	0.0385125	0.00310292	0.131324	0.0311614
chr2	20999595	20999689	1100416	0	-	0.425532	(0.419,0.45]	chr2	119926	4	EXON_LNCRNA	EXON_LNCRNA	ENSG00000261012	ENSG00000261012.2	ENST00000567376.2	lncRNA	lncRNA	lncRNA	lncRNA	2	246	2	4.66113	5.564005	6.46688	0.00757951	1.59518e-4	0.0579104	0.00385227
chr19	56645067	56645167	7295369	0	+	0.43	(0.419,0.45]	chr19	751256	1	SS3_PROX	SS3_PROX:INTRON	SMIM17	ENSG00000268182.6	ENST00000598409.6:ENST00000600547.1	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.55739	5.56395	5.57051	0.0310506	0.00441471	0.119758	0.0393688
chr2	239968030	239968130	1393497	0	-	0.43	(0.419,0.45]	chr2	148817	34	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000471378.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	74	2	5.55739	5.56395	5.57051	0.0310506	0.00441471	0.119758	0.0393688
chr22	30421160	30421205	7786201	0	-	0.422222	(0.419,0.45]	chr22	816699	1	SS5_PROX	SS5_PROX:INTRON	RNF215	ENSG00000099999.15	ENST00000431544.2	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.55739	5.56395	5.57051	0.0310506	0.00441471	0.119758	0.0393688
chr7	24854430	24854530	3554713	0	-	0.43	(0.419,0.45]	chr7	343456	14	INTRON	INTRON	OSBPL3	ENSG00000070882.13	ENST00000313367.7:ENST00000409863.5:ENST00000396431.5:ENST00000409452.5:ENST00000409759.5:ENST00000409555.5:ENST00000396429.5:ENST00000409069.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	74	2	5.55739	5.56395	5.57051	0.0310506	0.00441471	0.119758	0.0393688
chr16	14875422	14875522	6402499	0	+	0.42	(0.419,0.45]	chr16	632479	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NOMO1	ENSG00000103512.16	ENST00000287667.12	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.39934	5.5636399999999995	5.72794	0.0242188	0.00646489	0.106588	0.0503748
chr7	105936175	105936275	3444123	0	+	0.31	(0.29,0.33]	chr7	333440	121	INTRON	INTRON	CDHR3	ENSG00000128536.16	ENST00000470188.5:ENST00000488386.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	72	2	5.55737	5.56362	5.56987	0.0196268	0.0029307	0.095549	0.0298918
chr2	3458386	3458461	711016	0	+	0.573333	(0.523,0.58]	chr2	83173	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000479955.5:ENST00000497597.5:ENST00000473348.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	73	2	5.40225	5.563560000000001	5.72487	0.0163679	0.00404292	0.0875379	0.0371291
chr16	85425321	85425421	6517324	0	+	0.64	(0.58,1]	chr16	646391	660	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	87	2	4.66416	5.56314	6.46212	0.0144381	0.00211728	0.0833845	0.028892
chr2	239290770	239290870	1391616	0	-	0.59	(0.58,1]	chr2	148740	392	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	146	2	4.49148	5.563115	6.63475	0.00146621	3.89116e-4	0.023492	0.00732219
chr3	66035395	66035495	1815836	0	-	0.35	(0.33,0.36]	chr3	187318	263	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	76	2	5.0592	5.56304	6.06688	0.0504445	0.00105663	0.148216	0.0147548
chr10	48042326	48042425	4680789	0	-	0.515152	(0.485,0.523]	chr10	446508	29	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	1	159	2	4.74937	5.5629	6.37643	0.0052506	2.8864e-4	0.0476984	0.00590733
chr10	102618888	102618965	4576316	0	+	0.506494	(0.485,0.523]	chr10	437255	4	SS3_PROX	SS3_PROX:INTRON	SUFU	ENSG00000107882.12	ENST00000369902.8:ENST00000369899.6	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.55054	5.562885	5.57523	0.0215787	0.00274261	0.100612	0.028553
chr10	127262422	127262522	4610551	0	+	0.48	(0.45,0.485]	chr10	440799	46	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2:ENST00000484400.5:ENST00000464466.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	85	2	4.64346	5.56288	6.4823	0.0850039	2.88849e-4	0.181766	0.00590733
chr2	148051644	148051744	913668	0	+	0.25	[0,0.29]	chr2	102525	69	INTRON	INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000638130.1:ENST00000637308.1:ENST00000473478.5:ENST00000635796.1:ENST00000637997.1:ENST00000470063.5:ENST00000638043.2:ENST00000638090.1:ENST00000637445.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	71	2	5.30082	5.56284	5.82486	0.0212677	0.00117475	0.0996805	0.0158316
chr3	138296191	138296290	1577372	0	+	0.464646	(0.45,0.485]	chr3	167242	4	UTR3	UTR3:EXON_MRNA	ARMC8	ENSG00000114098.18	ENST00000538260.5:ENST00000481646.5:ENST00000469044.6:ENST00000491704.5:ENST00000461822.5:ENST00000460495.5:ENST00000466762.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	199	2	3.75426	5.562785	7.37131	0.0153755	2.08874e-5	0.0849828	8.65092e-4
chr19	309712	309808	7302970	0	-	0.572917	(0.523,0.58]	chr19	752391	4	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.30515	5.56277	5.82039	0.0139724	0.00509102	0.0805959	0.0433513
chr1	2295688	2295788	5169	0	+	0.58	(0.523,0.58]	chr1	1052	473	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	200	2	3.62324	5.56274	7.50224	0.0180195	9.94429e-6	0.0921579	5.11988e-4
chr14	95233431	95233531	6047980	0	-	0.4	(0.39,0.419]	chr14	593419	29	INTRON	INTRON	CLMN	ENSG00000165959.12	ENST00000298912.9:ENST00000555336.6:ENST00000555615.1:ENST00000553733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	76	2	5.09906	5.56273	6.0264	0.0535378	0.00134695	0.150319	0.0174765
chr1	43594384	43594483	107394	0	+	0.585859	(0.58,1]	chr1	13240	14	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	2	201	2	3.81127	5.56271	7.31415	7.94461e-4	3.2338e-4	0.0120803	0.0102338
chr22	31450660	31450760	7787771	0	-	0.38	(0.36,0.39]	chr22	817089	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EIF4ENIF1	ENSG00000184708.18	ENST00000344710.9:ENST00000495101.5:ENST00000330125.10:ENST00000397525.5:ENST00000397523.5:ENST00000418321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	74	2	5.28778	5.56263	5.83748	0.0407706	0.00213426	0.135868	0.0240825
chr11	117809688	117809787	5134980	0	-	0.59596	(0.58,1]	chr11	498595	73	INTRON	INTRON	FXYD2	ENSG00000137731.14	ENST00000514385.1:ENST00000532119.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	72	2	5.0607	5.56232	6.06394	0.029633	3.80904e-4	0.116079	0.00721291
chr9	17295894	17295994	4126853	0	+	0.38	(0.36,0.39]	chr9	392370	217	INTRON	INTRON	CNTLN	ENSG00000044459.15	ENST00000380647.8:ENST00000380641.4	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.45303	5.562155000000001	5.67128	0.023302	0.00525731	0.103669	0.044445
chr10	100971367	100971461	4569836	0	+	0.531915	(0.523,0.58]	chr10	436226	11	INTRON	INTRON	SEMA4G	ENSG00000095539.15	ENST00000519649.5:ENST00000521006.5:ENST00000518124.5:ENST00000518244.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	72	2	5.35124	5.562055	5.77287	0.0295772	0.00160162	0.116079	0.0197827
chr17	15463565	15463665	6860070	0	-	0.54	(0.523,0.58]	chr17	695067	101	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	72	2	5.35124	5.562055	5.77287	0.0295772	0.00160162	0.116079	0.0197827
chr7	138508804	138508904	3502489	0	+	0.45	(0.419,0.45]	chr7	337502	40	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	168	2	4.58163	5.5618099999999995	6.54199	0.00668959	7.04817e-4	0.0541558	0.0111395
chr1	19469805	19469905	412064	0	-	0.53	(0.523,0.58]	chr1	48151	201	INTRON	INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000459967.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	72	2	5.53665	5.561725	5.5868	0.020474	0.00291382	0.0979776	0.0298557
chr10	47533281	47533381	4680515	0	-	0.59	(0.58,1]	chr10	446443	94	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	1	146	2	4.7449	5.56156	6.37822	0.00252415	1.74253e-4	0.031696	0.00410754
chr17	37022013	37022113	6726420	0	+	0.42	(0.419,0.45]	chr17	675960	6	INTRON	INTRON	AATF	ENSG00000275700.6	ENST00000680340.1:ENST00000680356.1:ENST00000616434.2:ENST00000680579.1:ENST00000681800.1:ENST00000680330.1:ENST00000619387.5:ENST00000679997.1:ENST00000681062.1:ENST00000679881.1:ENST00000680782.1:ENST00000679600.1:ENST00000616392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	74	2	5.52959	5.56137	5.59315	0.029494	0.00484244	0.116079	0.0418176
chr18	58151859	58151958	7072531	0	+	0.444444	(0.419,0.45]	chr18	721129	19	INTRON	INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5:ENST00000588516.5:ENST00000456986.5:ENST00000675502.1:ENST00000675554.1:ENST00000675137.1:ENST00000587547.1:ENST00000675227.1:ENST00000357895.9:ENST00000435432.6:ENST00000586263.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	74	2	5.52959	5.56137	5.59315	0.029494	0.00484244	0.116079	0.0418176
chr11	108910680	108910780	4937195	0	+	0.52	(0.485,0.523]	chr11	476007	420	INTRON	INTRON	DDX10	ENSG00000178105.12	ENST00000690021.1:ENST00000686283.1:ENST00000322536.8:ENST00000648124.1:ENST00000688583.1:ENST00000686617.1:ENST00000688976.1:ENST00000687072.1:ENST00000526794.1:ENST00000692839.1:ENST00000689812.1:ENST00000690056.1:ENST00000690248.1:ENST00000530116.1:ENST00000524979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	74	2	5.30159	5.5611999999999995	5.82081	0.0138807	0.00529578	0.0804838	0.044517
chr10	133348390	133348490	4783418	0	-	0.59	(0.58,1]	chr10	457516	22	INTRON	INTRON	ENSG00000226699	ENSG00000226699.1	ENST00000452591.1	lncRNA	lncRNA	lncRNA	lncRNA	0	72	2	5.25731	5.56111	5.86491	0.00707578	0.00358178	0.0558168	0.0342681
chr19	950698	950798	7185353	0	+	0.47	(0.45,0.485]	chr19	730741	176	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	160	2	4.55802	5.56069	6.56336	0.00436001	5.63543e-4	0.0427656	0.00950156
chr22	35849183	35849283	7804030	0	-	0.35	(0.33,0.36]	chr22	817785	87	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000359369.8:ENST00000695807.1:ENST00000408983.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	74	2	5.20687	5.560455	5.91404	0.041040600000000003	0.00156051	0.136289	0.0194067
chr19	35001191	35001244	7244869	0	+	0.490566	(0.485,0.523]	chr19	742060	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	84	2	4.83072	5.56039	6.29006	0.0148956	0.00613935	0.0847741	0.0517628
chr5	175881635	175881734	2594671	0	+	0.636364	(0.58,1]	chr5	257471	17	UTR3	UTR3:EXON_MRNA	CPLX2	ENSG00000145920.15	ENST00000359546.8:ENST00000393745.8	protein_coding	protein_coding	protein_coding	protein_coding	1	204	2	5.26138	5.56027	5.85916	0.021217	3.85655e-6	0.0996078	2.64149e-4
chr16	11075420	11075520	6386631	0	+	0.46	(0.45,0.485]	chr16	631735	140	INTRON	INTRON	CLEC16A	ENSG00000038532.16	ENST00000409790.6:ENST00000409552.4:ENST00000465491.5:ENST00000646363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	74	2	5.16149	5.5602149999999995	5.95894	0.0427653	0.00119342	0.13762	0.016037
chr13	50810988	50811087	5600750	0	+	0.494949	(0.485,0.523]	chr13	551754	19	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000652753.1:ENST00000650996.1:ENST00000413510.4	lncRNA	lncRNA	lncRNA	lncRNA	0	82	2	4.8987	5.5602	6.2217	0.0129327	0.00693912	0.0778105	0.0553898
chr2	239343286	239343385	1392143	0	-	0.494949	(0.485,0.523]	chr2	148752	188	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	72	2	5.53308	5.560155	5.58723	0.0203514	0.00304306	0.0979211	0.0306636
chr9	4713694	4713792	4269907	0	-	0.418367	(0.39,0.419]	chr9	407900	2	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	2	227	2	4.36594	5.5601	6.75426	0.00400086	3.36459e-4	0.0409634	0.00659912
chr10	124757341	124757440	4779806	0	-	0.333333	(0.33,0.36]	chr10	456999	12	UTR3	UTR3:EXON_MRNA:INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000495711.2:ENST00000652548.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	74	2	5.37262	5.559775	5.74693	0.0181681	0.00569729	0.0921579	0.046716
chr3	27461139	27461239	1721576	0	-	0.35	(0.33,0.36]	chr3	178754	45	INTRON	INTRON	SLC4A7	ENSG00000033867.17	ENST00000425128.6:ENST00000454389.6:ENST00000445684.5:ENST00000437179.5:ENST00000438530.5:ENST00000440156.5:ENST00000446700.5:ENST00000455077.5:ENST00000457377.5:ENST00000437266.5:ENST00000428005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	74	2	5.37262	5.559775	5.74693	0.0181681	0.00569729	0.0921579	0.046716
chr17	61945179	61945278	6942500	0	-	0.393939	(0.39,0.419]	chr17	707889	27	UTR3	UTR3:EXON_MRNA	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	2	277	2	3.39858	5.559595	7.72061	0.015351	1.19145e-5	0.0849828	5.82703e-4
chr15	70690153	70690253	6313085	0	-	0.45	(0.419,0.45]	chr15	622441	3	SS5_PROX	SS5_PROX:INTRON	UACA	ENSG00000137831.15	ENST00000322954.11:ENST00000379983.6:ENST00000560441.5:ENST00000539319.5:ENST00000558758.5:ENST00000560523.5:ENST00000560167.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	104	2	4.38804	5.559225	6.73041	0.0451818	0.00486702	0.154539	0.0456282
chrX	109686637	109686736	8090997	0	-	0.242424	[0,0.29]	chrX	843698	8	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000505855.1:ENST00000508092.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	245	2	4.02989	5.5591349999999995	7.08838	6.19669e-4	2.65868e-4	0.0146109	0.00556524
chr2	69640077	69640177	1177198	0	-	0.35	(0.33,0.36]	chr2	128070	827	INTRON	INTRON	AAK1	ENSG00000115977.21	ENST00000409085.9:ENST00000606389.7:ENST00000409068.5:ENST00000406297.7:ENST00000495836.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	163	2	4.36858	5.55908	6.74958	0.00323839	0.00105616	0.0363368	0.0147548
chr6	128517028	128517128	3257141	0	-	0.41	(0.39,0.419]	chr6	315230	248	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000524534.5:ENST00000525459.1:ENST00000392449.4:ENST00000532751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	273	2	3.4948	5.558725	7.62265	0.00197438	8.169e-4	0.0228431	0.0170128
chr15	67102023	67102123	6139438	0	+	0.41	(0.39,0.419]	chr15	603944	26	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1:ENST00000559092.1:ENST00000560175.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	202	2	4.21026	5.5586	6.90694	0.00795633	1.27923e-4	0.0596361	0.00328053
chr18	12695851	12695947	7123234	0	-	0.375	(0.36,0.39]	chr18	724891	1	INTRON	INTRON	CEP76	ENSG00000101624.11	ENST00000590143.5:ENST00000262127.7:ENST00000423709.6:ENST00000593250.5:ENST00000585751.1:ENST00000591034.5:ENST00000592660.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	203	2	4.29205	5.5584299999999995	6.82481	0.00678615	1.5953e-4	0.0546743	0.00385227
chr5	116212347	116212447	2511093	0	+	0.45	(0.419,0.45]	chr5	249634	778	INTRON	INTRON	COMMD10	ENSG00000145781.9	ENST00000507356.5:ENST00000274458.9:ENST00000632434.1:ENST00000515539.5:ENST00000506589.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	74	2	5.32195	5.55814	5.79433	0.0431627	0.00262626	0.138403	0.0278348
chr12	26769158	26769258	5400961	0	-	0.44	(0.419,0.45]	chr12	528735	430	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000545235.1:ENST00000242737.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	205	2	4.13959	5.558115	6.97664	0.00979451	1.22002e-4	0.0668218	0.00318856
chr18	77018277	77018377	7180497	0	-	0.46	(0.45,0.485]	chr18	730157	6	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000580402.5:ENST00000580473.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000495162.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	81	2	4.95056	5.558035	6.16551	0.0127826	0.00879664	0.0773423	0.0630845
chr16	75095950	75096050	6492885	0	+	0.54	(0.523,0.58]	chr16	645364	2	SS5_PROX	SS5_PROX:INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1:ENST00000579084.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	72	2	5.49322	5.5579	5.62258	0.0193313	0.00324246	0.0954446	0.0319521
chr9	123404488	123404588	4396605	0	-	0.56	(0.523,0.58]	chr9	419589	6	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	72	2	5.49322	5.5579	5.62258	0.0193313	0.00324246	0.0954446	0.0319521
chr1	3472922	3472999	5841	0	+	0.584416	(0.58,1]	chr1	1238	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5:ENST00000464620.1:ENST00000418137.1:ENST00000485984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	103	2	4.29454	5.55779	6.82104	0.0305531	9.78215e-4	0.126768	0.0187475
chr11	10307208	10307302	4798137	0	+	0.457447	(0.45,0.485]	chr11	460139	7	UTR3	UTR3:EXON_MRNA	ADM	ENSG00000148926.10	ENST00000278175.10:ENST00000534464.1:ENST00000530439.1:ENST00000528655.5	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	5.12938	5.557695000000001	5.98601	0.0119228	0.00873194	0.0741726	0.0612699
chr1	29238314	29238414	78391	0	+	0.8	(0.58,1]	chr1	8914	12	INTRON	INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.21377	5.55716	5.90055	0.0230012	6.1741e-4	0.102982	0.0101143
chr12	50564108	50564208	5230047	0	+	0.4	(0.39,0.419]	chr12	507705	585	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	75	2	5.14823	5.557095	5.96596	0.0501234	0.00156652	0.147892	0.0194594
chr13	112913416	112913516	5654750	0	+	0.44	(0.419,0.45]	chr13	555099	29	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000442625.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	77	2	5.20508	5.557085	5.90909	0.0184411	0.00979452	0.0927235	0.0664239
chr16	72624439	72624539	6624815	0	-	0.38	(0.36,0.39]	chr16	663482	65	INTRON	INTRON	LINC01572	ENSG00000261008.8	ENST00000624829.4:ENST00000561611.2:ENST00000656218.1:ENST00000666555.2:ENST00000664155.1:ENST00000657725.1:ENST00000563770.5:ENST00000668081.1:ENST00000570152.2:ENST00000662171.1:ENST00000691892.1:ENST00000659470.1:ENST00000655530.1:ENST00000570035.5:ENST00000563823.6	lncRNA	lncRNA	lncRNA	lncRNA	0	74	2	5.24317	5.557005	5.87084	0.0433841	0.00196738	0.138813	0.022768300000000002
chr7	96220654	96220754	3642500	0	-	0.38	(0.36,0.39]	chr7	350731	5	INTRON	INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000472162.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	223	2	4.23655	5.5569749999999996	6.8774	0.00312796	4.81514e-4	0.0356998	0.00852502
chr14	104777623	104777717	6057665	0	-	0.670213	(0.58,1]	chr14	594698	10	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000557552.1:ENST00000683722.1:ENST00000555528.5:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000544168.5:ENST00000554848.5:ENST00000682269.1:ENST00000555380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	69	2	5.43752	5.55697	5.67642	0.0156166	0.00117039	0.0849828	0.0157899
chr9	2017508	2017605	4105274	0	+	0.659794	(0.58,1]	chr9	390911	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SMARCA2	ENSG00000080503.24	ENST00000637383.1:ENST00000357248.8:ENST00000450198.6:ENST00000634287.1:ENST00000637103.1:ENST00000349721.8:ENST00000636559.1:ENST00000634536.1:ENST00000636903.1:ENST00000637352.1:ENST00000637097.1:ENST00000457226.2:ENST00000382194.6:ENST00000439732.6:ENST00000634760.1:ENST00000637806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	69	2	5.43752	5.55697	5.67642	0.0156166	0.00117039	0.0849828	0.0157899
chr1	1063976	1064066	1379	0	+	0.777778	(0.58,1]	chr1	317	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000217801	ENSG00000217801.11	ENST00000688131.1:ENST00000456409.6:ENST00000692821.1:ENST00000394517.7:ENST00000427998.6:ENST00000685011.1:ENST00000692266.1:ENST00000412397.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	69	2	5.47839	5.55691	5.63543	0.0145198	0.00131165	0.0823104	0.0171898
chr3	32864619	32864719	1439338	0	+	0.64	(0.58,1]	chr3	153401	453	INTRON	INTRON	TRIM71	ENSG00000206557.6	ENST00000383763.6	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.47839	5.55691	5.63543	0.0145198	0.00131165	0.0823104	0.0171898
chr6	147865504	147865604	3030824	0	+	0.3	(0.29,0.33]	chr6	295875	1281	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	0	76	2	4.96914	5.55691	6.14468	0.0481918	6.61382e-4	0.144601	0.0106558
chr9	129500625	129500723	4250783	0	+	0.653061	(0.58,1]	chr9	404726	18	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	69	2	5.47839	5.55691	5.63543	0.0145198	0.00131165	0.0823104	0.0171898
chr22	24099266	24099363	7695353	0	+	0.515464	(0.485,0.523]	chr22	805517	6	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	76	2	4.96239	5.55623	6.15007	0.0518747	6.0909e-4	0.148503	0.0100377
chr16	8711536	8711636	6381505	0	+	0.46	(0.45,0.485]	chr16	631147	281	INTRON	INTRON	ABAT	ENSG00000183044.12	ENST00000564714.5:ENST00000268251.13:ENST00000563992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	242	2	3.06332	5.5562000000000005	8.04908	0.0467992	2.47351e-6	0.143232	1.92772e-4
chr10	31862657	31862756	4661171	0	-	0.545455	(0.523,0.58]	chr10	444971	6	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8	protein_coding	protein_coding	protein_coding	protein_coding	1	156	2	4.54015	5.55593	6.57171	0.00369199	5.15707e-4	0.0389784	0.00894095
chr8	630537	630637	3932025	0	-	0.58	(0.523,0.58]	chr8	376005	29	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	156	2	4.54015	5.55593	6.57171	0.00369199	5.15707e-4	0.0389784	0.00894095
chrY	14792793	14792893	8143370	0	+	0.31	(0.29,0.33]	chrY	848323	406	INTRON	INTRON	NLGN4Y	ENSG00000165246.15	ENST00000643089.1:ENST00000382872.5:ENST00000355905.6:ENST00000382868.5:ENST00000476359.1:ENST00000684976.1:ENST00000339174.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	73	2	5.1769	5.55591	5.93492	0.035586	0.00115909	0.127529	0.0157704
chr16	81629187	81629286	6509589	0	+	0.606061	(0.58,1]	chr16	645926	71	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.39546	5.5558700000000005	5.71628	0.0168207	0.00104668	0.0884836	0.0146403
chr10	28559334	28559433	4469678	0	+	0.424242	(0.419,0.45]	chr10	427649	209	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	204	2	3.99023	5.55581	7.12139	0.0125707	8.12764e-5	0.0761905	0.00234456
chr3	48087672	48087772	1765942	0	-	0.64	(0.58,1]	chr3	182011	714	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	3	498	2	5.07401	5.5558	6.03759	2.0761e-4	2.02859e-6	0.00813372	1.68215e-4
chr5	113561882	113561981	2508722	0	+	0.373737	(0.36,0.39]	chr5	249478	3	INTRON	INTRON	YTHDC2	ENSG00000047188.16	ENST00000161863.9	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.49224	5.555765	5.61929	0.0304242	0.00359045	0.11845	0.0342681
chr3	185820215	185820313	1971314	0	-	0.336735	(0.33,0.36]	chr3	200402	58	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1:ENST00000466214.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	167	2	4.13891	5.5556350000000005	6.97236	0.0021433	0.0019382	0.0291055	0.0225083
chr18	45937233	45937331	7153839	0	-	0.316327	(0.29,0.33]	chr18	727350	19	INTRON	INTRON	EPG5	ENSG00000152223.16	ENST00000696483.1:ENST00000696484.1:ENST00000282041.11:ENST00000587884.2:ENST00000590884.6:ENST00000592272.6:ENST00000696485.1:ENST00000696489.1:ENST00000696490.1:ENST00000696482.1:ENST00000587974.1:ENST00000696480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	76	2	5.13716	5.5556	5.97404	0.0096909	0.00805226	0.0661757	0.0582806
chr5	131521821	131521921	2756178	0	-	0.49	(0.485,0.523]	chr5	270111	3	SS3_PROX	SS3_PROX:INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000514179.5:ENST00000513227.5:ENST00000504575.5:ENST00000504039.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	191	2	4.26564	5.555235	6.84483	0.00564361	8.20567e-5	0.0495171	0.00236018
chr15	80839264	80839364	6164220	0	+	0.49	(0.485,0.523]	chr15	606634	593	INTRON	INTRON	CEMIP	ENSG00000103888.17	ENST00000220244.7:ENST00000394685.8:ENST00000356249.9	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.01719	5.55519	6.09319	0.0480495	7.11715e-4	0.144601	0.0112082
chrX	101124041	101124139	7924478	0	+	0.438776	(0.419,0.45]	chrX	829351	29	INTRON	INTRON	CENPI	ENSG00000102384.14	ENST00000684367.1:ENST00000423383.3:ENST00000682095.1:ENST00000372927.5:ENST00000372926.5	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	4.91849	5.555065	6.19164	0.0174488	0.0118587	0.0928044	0.0740271
chr2	44434597	44434697	781201	0	+	0.37	(0.36,0.39]	chr2	89654	336	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000403853.7:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	77	2	4.99672	5.554925	6.11313	0.0604395	0.00107374	0.158506	0.0148869
chr1	149509940	149510028	238656	0	+	0.465909	(0.45,0.485]	chr1	26648	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF19	ENSG00000271383.8	ENST00000651566.2:ENST00000611931.4:ENST00000612881.4:ENST00000369227.7:ENST00000426482.3	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.23735	5.55489	5.87243	0.0143887	0.00687715	0.0821732	0.0526888
chr18	47919371	47919471	7157575	0	-	0.46	(0.45,0.485]	chr18	727768	70	INTRON	INTRON	SMAD2	ENSG00000175387.16	ENST00000262160.11:ENST00000402690.6:ENST00000356825.8:ENST00000591214.5:ENST00000587269.5:ENST00000586514.5:ENST00000587421.5:ENST00000589877.5:ENST00000585978.1	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.23735	5.55489	5.87243	0.0143887	0.00687715	0.0821732	0.0526888
chr5	171397263	171397363	2590253	0	+	0.39	(0.36,0.39]	chr5	257001	39	INTRON	INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	73	2	5.4139	5.554819999999999	5.69574	0.0340874	0.00299965	0.125059	0.030427
chr13	29520049	29520147	5677207	0	-	0.459184	(0.45,0.485]	chr13	557615	1	INTRON	INTRON	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	2	437	2	4.83579	5.554715	6.27364	0.00212067	2.94542e-6	0.028925	2.17247e-4
chr11	96076295	96076395	5110898	0	-	0.38	(0.36,0.39]	chr11	496560	842	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6:ENST00000618849.1	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	4.86249	5.5546299999999995	6.24677	0.0181775	0.00931845	0.0955836	0.0649153
chr19	5817893	5817992	7195565	0	+	0.515152	(0.485,0.523]	chr19	733105	121	INTRON	INTRON	NRTN	ENSG00000171119.3	ENST00000303212.3	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.35096	5.554399999999999	5.75784	0.0154142	0.0047171	0.0849828	0.0413976
chr2	138566865	138566964	904548	0	+	0.393939	(0.39,0.419]	chr2	101982	15	INTRON	INTRON	SPOPL	ENSG00000144228.9	ENST00000280098.9:ENST00000420679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	73	2	5.41254	5.55386	5.69518	0.0347088	0.00302238	0.12648	0.0305643
chr6	98920705	98920804	3207942	0	-	0.272727	[0,0.29]	chr6	311438	26	INTRON	INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.47172	5.55378	5.63584	0.0158465	0.00193639	0.0859576	0.0225083
chr12	22477955	22478027	5383599	0	-	0.416667	(0.39,0.419]	chr12	527979	3	SS5_PROX	SS5_PROX:INTRON	C2CD5	ENSG00000111731.13	ENST00000333957.8:ENST00000446597.6:ENST00000536386.5:ENST00000396028.6:ENST00000542676.5:ENST00000545552.5	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.52851	5.553715	5.57892	0.029339	0.00396694	0.116079	0.0368027
chr15	44641599	44641698	6249266	0	-	0.373737	(0.36,0.39]	chr15	615465	76	INTRON	INTRON	SPG11	ENSG00000104133.16	ENST00000684235.1:ENST00000261866.12:ENST00000559511.6:ENST00000682065.1:ENST00000682669.1:ENST00000683496.1:ENST00000682460.1:ENST00000682495.1:ENST00000684038.1:ENST00000683186.1:ENST00000683734.1:ENST00000683753.1:ENST00000535302.6:ENST00000427534.6:ENST00000558319.5:ENST00000684676.1:ENST00000682788.1:ENST00000683121.1:ENST00000682915.1:ENST00000683255.1:ENST00000683573.1:ENST00000682877.1:ENST00000559193.5:ENST00000684490.1:ENST00000682410.1:ENST00000682648.1:ENST00000557866.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	77	2	5.16105	5.553715	5.9463800000000004	0.0151971	0.00993384	0.084474	0.0666221
chr13	29548771	29548871	5677504	0	-	0.46	(0.45,0.485]	chr13	557653	122	INTRON	INTRON	SLC7A1	ENSG00000139514.13	ENST00000380752.10:ENST00000450494.1	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.42587	5.55371	5.68155	0.0290571	0.00241241	0.116079	0.0261086
chr17	4854516	4854616	6672098	0	+	0.5	(0.485,0.523]	chr17	668609	205	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	77	2	5.08528	5.55354	6.0218	0.00985907	0.0086528	0.0670775	0.0612699
chr12	2960353	2960453	5157687	0	+	0.56	(0.523,0.58]	chr12	501256	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TEAD4	ENSG00000197905.10	ENST00000358409.7:ENST00000359864.8:ENST00000540314.2:ENST00000536826.2:ENST00000543035.6:ENST00000397122.6:ENST00000443986.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	72	2	5.26332	5.5535250000000005	5.84373	0.0337698	0.00133116	0.124319	0.0173248
chr22	46961800	46961900	7747013	0	+	0.53	(0.523,0.58]	chr22	812232	480	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	72	2	5.26332	5.5535250000000005	5.84373	0.0337698	0.00133116	0.124319	0.0173248
chr13	113615036	113615135	5659151	0	+	0.535354	(0.523,0.58]	chr13	555781	36	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	78	2	4.84569	5.5534099999999995	6.26113	0.0610722	4.27166e-4	0.158506	0.00779962
chr2	70063293	70063391	1178618	0	-	0.459184	(0.45,0.485]	chr2	128232	33	INTRON	INTRON	PCBP1-AS1	ENSG00000179818.16	ENST00000419542.5:ENST00000682294.1:ENST00000684630.1:ENST00000630975.3:ENST00000435880.6:ENST00000629339.3:ENST00000667874.1:ENST00000628659.2:ENST00000628308.2:ENST00000626515.2:ENST00000625447.2:ENST00000628305.2:ENST00000625625.2:ENST00000625864.2:ENST00000630522.2:ENST00000629084.2:ENST00000629603.2:ENST00000625215.2:ENST00000627189.2:ENST00000629836.2:ENST00000626898.2:ENST00000628883.2:ENST00000629533.2:ENST00000627181.2:ENST00000630214.2:ENST00000627918.2:ENST00000628374.2:ENST00000627327.2:ENST00000626495.2:ENST00000629605.2:ENST00000626370.2:ENST00000626842.2:ENST00000630457.2:ENST00000629184.2:ENST00000628551.2:ENST00000630746.2:ENST00000627398.2:ENST00000457076.5:ENST00000625783.2:ENST00000625490.2:ENST00000627050.2:ENST00000630759.2:ENST00000628667.2:ENST00000626632.2:ENST00000631110.2:ENST00000626609.2:ENST00000629506.2:ENST00000630985.2:ENST00000413436.5:ENST00000628147.2:ENST00000631107.2:ENST00000629415.2:ENST00000418564.5:ENST00000415222.5:ENST00000628322.2:ENST00000665708.1:ENST00000655086.1:ENST00000420309.6:ENST00000627487.3:ENST00000670036.1:ENST00000655096.1:ENST00000685127.1:ENST00000684907.1:ENST00000685079.1:ENST00000687866.1:ENST00000692564.1:ENST00000686517.1:ENST00000689138.1:ENST00000688056.1:ENST00000692333.1:ENST00000688045.1:ENST00000657291.1:ENST00000691987.1:ENST00000664483.1:ENST00000601431.6:ENST00000685803.1:ENST00000690200.1:ENST00000686800.1:ENST00000684857.1:ENST00000627037.2:ENST00000688473.1:ENST00000456161.5:ENST00000627074.2:ENST00000419963.5:ENST00000625227.2:ENST00000599673.5:ENST00000629407.2:ENST00000418308.5:ENST00000630283.2:ENST00000629178.2:ENST00000627542.2:ENST00000626574.2:ENST00000596028.5:ENST00000629485.2:ENST00000630685.2:ENST00000452431.5:ENST00000629374.2:ENST00000423402.5:ENST00000411429.5:ENST00000629188.2:ENST00000434781.5:ENST00000626162.2:ENST00000654878.1:ENST00000659586.1:ENST00000457770.6:ENST00000415742.5:ENST00000627540.2:ENST00000628263.2:ENST00000657575.2:ENST00000689275.1:ENST00000687961.1:ENST00000416395.6:ENST00000692733.1:ENST00000654336.1:ENST00000686055.1:ENST00000626509.3:ENST00000425601.6:ENST00000653064.1:ENST00000656326.1:ENST00000668711.1:ENST00000665172.1:ENST00000630520.3:ENST00000663209.1:ENST00000659305.1:ENST00000654601.1:ENST00000663375.1:ENST00000654958.1:ENST00000665838.1:ENST00000653606.1:ENST00000659941.1:ENST00000669583.1:ENST00000660903.1:ENST00000653596.1:ENST00000656308.1:ENST00000449178.6:ENST00000625955.3:ENST00000655140.1:ENST00000661989.1:ENST00000664419.1:ENST00000670785.1:ENST00000661703.1:ENST00000658454.1:ENST00000664049.1:ENST00000655058.1:ENST00000366234.7:ENST00000597318.5:ENST00000625518.2:ENST00000425333.5:ENST00000429599.6:ENST00000432604.5:ENST00000421843.5:ENST00000458686.5:ENST00000421255.5:ENST00000413069.5:ENST00000685037.1:ENST00000458698.6:ENST00000670786.1:ENST00000657164.1:ENST00000665264.1:ENST00000413791.5:ENST00000690464.1:ENST00000690924.1:ENST00000688311.1:ENST00000691287.1:ENST00000655481.1:ENST00000655420.1:ENST00000612202.5:ENST00000666167.1:ENST00000664958.1:ENST00000416068.6:ENST00000653289.1:ENST00000653811.1:ENST00000661863.1:ENST00000659531.1:ENST00000667307.1:ENST00000437019.2:ENST00000666074.1:ENST00000654716.1:ENST00000439670.6:ENST00000669812.1:ENST00000660404.2:ENST00000656852.1:ENST00000670845.1:ENST00000669570.1:ENST00000422515.6:ENST00000653114.1:ENST00000667952.1:ENST00000662224.1:ENST00000664533.1:ENST00000670313.1:ENST00000626558.3:ENST00000670974.1:ENST00000664014.1:ENST00000668191.1:ENST00000609543.6:ENST00000664754.1:ENST00000662103.1:ENST00000669896.1:ENST00000629943.3:ENST00000625788.3:ENST00000663033.1:ENST00000442040.5:ENST00000627155.2:ENST00000601396.5:ENST00000629825.2:ENST00000444410.5:ENST00000444320.5:ENST00000630377.2:ENST00000662425.1:ENST00000688278.1:ENST00000596573.5:ENST00000594548.5:ENST00000601395.1:ENST00000437456.5:ENST00000595459.5:ENST00000415060.6:ENST00000596665.5:ENST00000625257.2:ENST00000627528.2:ENST00000630206.2:ENST00000628102.2:ENST00000439892.6:ENST00000609075.5:ENST00000628757.2	lncRNA	lncRNA	lncRNA	lncRNA	1	167	2	4.96547	5.55333	6.14119	0.00917101	1.73515e-4	0.064285	0.0040962
chr17	38745671	38745769	6895632	0	-	0.591837	(0.58,1]	chr17	700401	49	INTRON	INTRON	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000611883.4:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.54978	5.553295	5.55681	0.0126042	0.00165911	0.0761905	0.0202545
chr4	1325957	1326055	1995298	0	+	0.714286	(0.58,1]	chr4	203264	20	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	69	2	5.54978	5.553295	5.55681	0.0126042	0.00165911	0.0761905	0.0202545
chr18	9566607	9566705	7114493	0	-	0.540816	(0.523,0.58]	chr18	724056	27	INTRON	INTRON	PPP4R1	ENSG00000154845.16	ENST00000400555.7:ENST00000400556.8:ENST00000285124.12:ENST00000578557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	72	2	5.44845	5.55297	5.65749	0.0182707	0.00361636	0.0921579	0.0342681
chr19	324634	324734	7303122	0	-	0.55	(0.523,0.58]	chr19	752407	106	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.44845	5.55297	5.65749	0.0182707	0.00361636	0.0921579	0.0342681
chr22	50683139	50683239	7755001	0	+	0.53	(0.523,0.58]	chr22	812717	4	SS3_PROX	SS3_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	72	2	5.44845	5.55297	5.65749	0.0182707	0.00361636	0.0921579	0.0342681
chr7	27817138	27817238	3333520	0	+	0.39	(0.36,0.39]	chr7	322798	1	SS5_PROX	SS5_PROX:INTRON	TAX1BP1	ENSG00000106052.14	ENST00000543117.5:ENST00000433216.6:ENST00000265393.10:ENST00000409980.5:ENST00000416801.6:ENST00000396319.7:ENST00000457186.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	76	2	5.04949	5.552875	6.05626	0.0563927	0.00124043	0.154188	0.0165207
chr3	188599768	188599868	1656268	0	+	0.39	(0.36,0.39]	chr3	173807	149	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000494233.5:ENST00000462758.1:ENST00000471917.1:ENST00000487347.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	73	2	5.37307	5.55279	5.73251	0.0361409	0.0027486	0.127853	0.028553
chr14	35801212	35801312	5961331	0	-	0.45	(0.419,0.45]	chr14	584374	251	INTRON	INTRON	RALGAPA1	ENSG00000174373.17	ENST00000307138.10:ENST00000389698.7:ENST00000680220.1:ENST00000554259.6:ENST00000637992.1:ENST00000382366.7:ENST00000553892.2	protein_coding	protein_coding	protein_coding	protein_coding	1	167	2	4.58163	5.552605	6.52358	0.00689831	7.04817e-4	0.0553728	0.0111395
chr3	129394295	129394389	1911560	0	-	0.585106	(0.58,1]	chr3	194158	1	INTRON	INTRON	RPL32P3	ENSG00000251474.7	ENST00000510078.5:ENST00000507287.5:ENST00000687239.1:ENST00000514355.5:ENST00000507238.5:ENST00000515866.5:ENST00000499631.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	145	2	4.47001	5.55238	6.63475	0.00146621	4.15967e-4	0.023492	0.00768537
chr3	13206224	13206324	1691204	0	-	0.48	(0.45,0.485]	chr3	176566	417	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.38503	5.552155000000001	5.71928	0.0308908	0.00219685	0.119556	0.0245167
chr14	70026644	70026744	5872649	0	+	0.48	(0.45,0.485]	chr14	573363	28	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.54186	5.551945	5.56203	0.0243502	0.00322991	0.106588	0.0319521
chr1	100500751	100500850	197543	0	+	0.363636	(0.36,0.39]	chr1	21428	11	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000647005.1:ENST00000336454.5:ENST00000644813.1	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.214	5.55181	5.88962	0.0166261	0.00887999	0.0884836	0.0618231
chr6	2143831	2143931	3084320	0	-	0.35	(0.33,0.36]	chr6	299521	187	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	4.95163	5.551495	6.15136	0.0583482	8.48155e-4	0.155373	0.0126615
chr11	62713914	62714012	5045882	0	-	0.5	(0.485,0.523]	chr11	489786	14	UTR3	UTR3:EXON_MRNA:INTRON	HNRNPUL2-BSCL2:HNRNPUL2	ENSG00000234857.2:ENSG00000214753.4	ENST00000403734.2:ENST00000301785.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	72	2	5.44489	5.5514	5.65791	0.0181582	0.00377098	0.0921579	0.0353672
chr17	610092	610192	6823267	0	-	0.51	(0.485,0.523]	chr17	689763	78	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000680944.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000681897.1:ENST00000681830.1:ENST00000679959.1:ENST00000680114.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000570650.2:ENST00000679680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	72	2	5.44489	5.5514	5.65791	0.0181582	0.00377098	0.0921579	0.0353672
chr16	85375342	85375442	6516824	0	+	0.62	(0.58,1]	chr16	646391	160	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	4.95814	5.5512049999999995	6.14427	0.0074469	0.00407804	0.0553519	0.0413652
chr1	37866358	37866458	448824	0	-	0.46	(0.45,0.485]	chr1	53778	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	INPP5B	ENSG00000204084.13	ENST00000373023.6:ENST00000373024.8:ENST00000458109.6:ENST00000373027.5:ENST00000373026.5	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.38553	5.55106	5.71659	0.018513	0.00490471	0.0928429	0.0422077
chr20	21238487	21238586	7448900	0	+	0.565657	(0.523,0.58]	chr20	775009	53	INTRON	INTRON	KIZ	ENSG00000088970.16	ENST00000619574.4:ENST00000620891.4:ENST00000611685.4:ENST00000616848.4:ENST00000619189.5:ENST00000616679.4:ENST00000619179.4:ENST00000621366.1:ENST00000451772.5:ENST00000419359.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	160	2	4.1892	5.550825	6.91245	0.00193417	0.00138633	0.0275437	0.0179017
chr10	76063482	76063582	4526808	0	+	0.41	(0.39,0.419]	chr10	432311	43	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	165	2	4.62657	5.550660000000001	6.47475	0.00649594	5.77346e-4	0.0532359	0.00964326
chr12	120984459	120984558	5340975	0	+	0.59596	(0.58,1]	chr12	521546	50	INTRON	INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000400024.6:ENST00000560968.5:ENST00000402929.5:ENST00000535955.5:ENST00000538626.2:ENST00000538646.5:ENST00000541924.5:ENST00000544574.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	193	2	4.0591	5.550355	7.04161	5.99793e-4	3.66295e-4	0.0143535	0.00700977
chr6	519280	519380	3077333	0	-	0.66	(0.58,1]	chr6	299297	192	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.00585	5.550174999999999	6.0945	0.0323732	3.47472e-4	0.121593	0.00673552
chr7	583122	583220	3523917	0	-	0.602041	(0.58,1]	chr7	340376	34	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000400758.6:ENST00000430040.5	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.30747	5.55015	5.79283	0.0196049	8.4246e-4	0.0955413	0.0125912
chr20	5105987	5106087	7519049	0	-	0.51	(0.485,0.523]	chr20	784931	4	SS5_PROX	SS5_PROX:INTRON	TMEM230	ENSG00000089063.15	ENST00000615008.4:ENST00000612323.4:ENST00000202834.11:ENST00000379283.6:ENST00000379279.6:ENST00000379299.6:ENST00000379286.6:ENST00000492419.1:ENST00000379277.6:ENST00000342308.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	189	2	4.15548	5.5500799999999995	6.94468	0.00693242	6.06735e-5	0.0553898	0.00188492
chr17	77215285	77215382	6803127	0	+	0.484536	(0.45,0.485]	chr17	686684	14	UTR3	UTR3:EXON_MRNA:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	5	928	2	5.45158	5.549965	5.64835	2.51147e-4	2.23314e-6	0.0089838	1.79965e-4
chr22	48702737	48702837	7751295	0	+	0.64	(0.58,1]	chr22	812283	90	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	83	2	4.74346	5.5499600000000004	6.35646	0.0121457	0.00264106	0.0754623	0.0325876
chr17	17820942	17821021	6865730	0	-	0.56962	(0.523,0.58]	chr17	695914	2	SS3_PROX	SS3_PROX:INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	211	2	3.87652	5.549895	7.22327	0.00105256	9.51496e-4	0.0194688	0.0136675
chr1	3471657	3471757	5827	0	+	0.65	(0.58,1]	chr1	1232	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5:ENST00000464620.1:ENST00000418137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	73	2	5.14497	5.549754999999999	5.95454	0.0059453	0.00474658	0.0506158	0.0413976
chr2	239371901	239372001	1392431	0	-	0.63	(0.58,1]	chr2	148759	186	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	69	2	5.50497	5.549720000000001	5.59447	0.0117666	0.00187297	0.0737098	0.0219434
chr3	31980598	31980698	1730401	0	-	0.66	(0.58,1]	chr3	179064	3	SS5_PROX	SS5_PROX:INTRON	OSBPL10	ENSG00000144645.15	ENST00000396556.7:ENST00000438237.6:ENST00000480671.5:ENST00000479173.1:ENST00000452791.1:ENST00000465626.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	69	2	5.50497	5.549720000000001	5.59447	0.0117666	0.00187297	0.0737098	0.0219434
chr7	1007949	1008049	3526302	0	-	0.66	(0.58,1]	chr7	340566	70	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	70	2	5.16453	5.549635	5.93474	0.0249802	5.58693e-4	0.10758	0.00944382
chr2	215974808	215974908	1369031	0	-	0.54	(0.523,0.58]	chr2	145838	273	INTRON	INTRON	MREG	ENSG00000118242.16	ENST00000263268.11:ENST00000620139.4:ENST00000439791.5:ENST00000424992.5:ENST00000420348.1	protein_coding	protein_coding	protein_coding	protein_coding	4	379	2	3.65281	5.54961	7.44641	0.00420983	1.18895e-5	0.0421541	5.81984e-4
chr2	44725111	44725211	784117	0	+	0.46	(0.45,0.485]	chr2	89709	9	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000477830.1:ENST00000613618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	72	2	5.34301	5.54953	5.75605	0.0328801	0.002004	0.122593	0.0230381
chr16	78961516	78961616	6504034	0	+	0.51	(0.485,0.523]	chr16	645717	1812	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	158	2	4.76502	5.549455	6.33389	0.00567224	2.75605e-4	0.0496143	0.00572715
chr13	36900544	36900644	5690620	0	-	0.47	(0.45,0.485]	chr13	558430	203	INTRON	INTRON	SMAD9	ENSG00000120693.14	ENST00000379826.5:ENST00000350148.10:ENST00000483941.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	72	2	5.51989	5.549215	5.57854	0.0230065	0.00357389	0.102982	0.0342681
chr7	100580177	100580276	3654718	0	-	0.676768	(0.58,1]	chr7	352212	15	EXON_MRNA	EXON_MRNA:INTRON	LRCH4	ENSG00000077454.17	ENST00000310300.11:ENST00000467201.5:ENST00000497245.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	72	2	5.20223	5.54882	5.89541	0.0066708	0.00411607	0.0540577	0.0374453
chr11	70815965	70816065	5062443	0	-	0.62	(0.58,1]	chr11	492713	84	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	70	2	5.36153	5.548775	5.73602	0.00904546	0.00273899	0.0637469	0.028553
chr9	134376316	134376416	4261188	0	+	0.6	(0.58,1]	chr9	406321	18	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2:ENST00000356384.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	70	2	5.36153	5.548775	5.73602	0.00904546	0.00273899	0.0637469	0.028553
chr16	16038194	16038293	6406891	0	+	0.515152	(0.485,0.523]	chr16	633041	12	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	156	2	4.60039	5.5487	6.49701	0.00420849	4.46264e-4	0.0421454	0.00807719
chr1	198289048	198289148	311872	0	+	0.41	(0.39,0.419]	chr1	35179	96	INTRON	INTRON	NEK7	ENSG00000151414.15	ENST00000367385.9:ENST00000538004.5:ENST00000493790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	74	2	5.36155	5.54865	5.73575	0.0215144	0.00648185	0.100612	0.0503748
chr20	41045124	41045224	7478596	0	+	0.25	[0,0.29]	chr20	778843	153	INTRON	INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	70	2	5.50928	5.54854	5.5878	0.0128957	0.00267774	0.0773953	0.0282006
chr17	62533382	62533481	6780098	0	+	0.414141	(0.39,0.419]	chr17	683593	87	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	73	2	5.49586	5.548405000000001	5.60095	0.0263614	0.00479873	0.110638	0.0416285
chr17	43542579	43542679	6909594	0	-	0.53	(0.523,0.58]	chr17	703271	57	INTRON	INTRON	ETV4	ENSG00000175832.13	ENST00000538265.5:ENST00000319349.10:ENST00000393664.6:ENST00000545954.5:ENST00000545089.5:ENST00000591713.5:ENST00000590236.5:ENST00000585508.5:ENST00000587151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	156	2	4.38556	5.54836	6.71116	0.00284169	8.02365e-4	0.033773	0.0121806
chr7	1937994	1938093	3529604	0	-	0.676768	(0.58,1]	chr7	340962	7	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000450235.5:ENST00000437877.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	144	2	4.61399	5.548170000000001	6.48235	0.00202884	2.64819e-4	0.0283135	0.00556151
chr9	77998123	77998223	4321516	0	-	0.55	(0.523,0.58]	chr9	412907	754	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.1205	5.54815	5.9758	0.0416463	9.36996e-4	0.136301	0.0135546
chr14	91497269	91497368	6039774	0	-	0.40404	(0.39,0.419]	chr14	592261	61	INTRON	INTRON	PPP4R3A	ENSG00000100796.18	ENST00000554943.6:ENST00000554684.5:ENST00000555462.5:ENST00000554308.5:ENST00000554390.5:ENST00000555029.5:ENST00000557018.5:ENST00000554511.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	0	75	2	5.09906	5.5477799999999995	5.9965	0.0535378	0.00145172	0.150319	0.0184691
chr10	50382502	50382602	4688269	0	-	0.41	(0.39,0.419]	chr10	447049	378	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	164	2	4.40613	5.547715	6.6893	0.00448396	0.00104511	0.0436138	0.0146403
chr3	51665796	51665895	1472198	0	+	0.464646	(0.45,0.485]	chr3	157989	25	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	2	213	2	4.17662	5.54754	6.91846	0.00226513	4.59004e-4	0.0300628	0.00821903
chr20	20490922	20491022	7534108	0	-	0.5	(0.485,0.523]	chr20	786272	176	INTRON	INTRON	RALGAPA2	ENSG00000188559.16	ENST00000202677.12:ENST00000430436.5:ENST00000427175.2	protein_coding	protein_coding	protein_coding	protein_coding	1	171	2	3.8948	5.547505	7.20021	0.00310434	0.00109136	0.0311614	0.0198839
chr2	147905495	147905595	913092	0	+	0.36	(0.33,0.36]	chr2	102466	52	INTRON	INTRON	ACVR2A	ENSG00000121989.15	ENST00000535787.5:ENST00000404590.1:ENST00000241416.12	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.22448	5.54735	5.87022	0.0148989	0.00791583	0.0834354	0.057762
chr16	953585	953674	6531569	0	-	0.561798	(0.523,0.58]	chr16	648705	6	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1:ENST00000566609.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	73	2	5.30515	5.547195	5.78924	0.0147166	0.00509102	0.0826843	0.0433513
chr1	43423416	43423516	106289	0	+	0.58	(0.523,0.58]	chr1	12949	1	SS5_PROX	SS5_PROX:INTRON	SZT2	ENSG00000198198.17	ENST00000562955.2:ENST00000634258.3:ENST00000470139.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	72	2	5.40225	5.5469100000000005	5.69157	0.0172851	0.00404292	0.0897247	0.0371291
chr13	111186007	111186101	5651308	0	+	0.553191	(0.523,0.58]	chr13	554738	4	INTRON	INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000449979.5:ENST00000491775.5:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8:ENST00000467053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	71	2	5.47382	5.54679	5.61976	0.0244797	0.00236826	0.106683	0.0259199
chr2	218463105	218463205	1370758	0	-	0.55	(0.523,0.58]	chr2	146084	4	SS5_PROX	SS5_PROX:INTRON	USP37	ENSG00000135913.11	ENST00000258399.8:ENST00000454775.5:ENST00000415516.5:ENST00000418019.5	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.47382	5.54679	5.61976	0.0244797	0.00236826	0.106683	0.0259199
chr11	57304067	57304165	5038257	0	-	0.602041	(0.58,1]	chr11	488042	7	INTRON	INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	357	2	5.24255	5.546715	5.85088	4.08009e-4	3.97259e-6	0.0115728	2.69241e-4
chr3	30612267	30612367	1433148	0	+	0.52	(0.485,0.523]	chr3	152992	49	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4	protein_coding	protein_coding	protein_coding	protein_coding	6	1051	2	5.27414	5.54655	5.81896	3.02697e-4	5.91796e-7	0.00988096	7.40609e-5
chr12	132950164	132950264	5542033	0	-	0.52	(0.485,0.523]	chr12	547064	15	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	156	2	4.63485	5.546390000000001	6.45793	0.00452302	4.03769e-4	0.0436138	0.00752123
chr20	57566190	57566286	7496933	0	+	0.3125	(0.29,0.33]	chr20	781830	5	UTR3	UTR3:EXON_MRNA	PCK1	ENSG00000124253.11	ENST00000467047.1:ENST00000319441.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	916	2	5.19216	5.546250000000001	5.90034	0.00712176	4.1485e-5	0.0541241	0.0035767
chr7	32738458	32738558	3341823	0	+	0.53	(0.523,0.58]	chr7	323408	50	INTRON	INTRON	ZNRF2P1	ENSG00000237004.4	ENST00000650302.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	155	2	4.4841	5.54598	6.60786	0.00345115	6.06023e-4	0.037649	0.0100269
chr20	37518013	37518113	7559950	0	-	0.49	(0.485,0.523]	chr20	789583	7	UTR3	UTR3:EXON_MRNA:INTRON	BLCAP	ENSG00000166619.15	ENST00000467603.1:ENST00000373537.7:ENST00000397137.5:ENST00000414542.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	257	2	3.54992	5.545845	7.54177	0.0095322	9.4141e-6	0.0658012	4.92849e-4
chr1	61149626	61149726	146778	0	+	0.46	(0.45,0.485]	chr1	17147	167	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	72	2	5.29973	5.54582	5.79191	0.035042	0.00183113	0.12704	0.0216571
chr1	43980011	43980046	110955	0	+	0.542857	(0.523,0.58]	chr1	13803	1	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS5_PROX:INTRON	B4GALT2	ENSG00000117411.18	ENST00000498543.1:ENST00000434555.7:ENST00000372324.6:ENST00000481924.2:ENST00000497866.6:ENST00000485678.6:ENST00000356836.10:ENST00000309519.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	71	2	5.39327	5.545805	5.69834	0.0277354	0.00194036	0.112851	0.0225083
chr17	72406405	72406504	6962349	0	-	0.424242	(0.419,0.45]	chr17	710302	12	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000648907.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000650483.1:ENST00000650371.1:ENST00000650313.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000647593.1:ENST00000649311.1:ENST00000457958.7:ENST00000649881.1:ENST00000649647.1:ENST00000648401.1:ENST00000648297.1:ENST00000578206.2:ENST00000649172.1:ENST00000649733.1:ENST00000650212.1:ENST00000648520.1:ENST00000649250.1:ENST00000648069.1:ENST00000647652.1:ENST00000647953.1:ENST00000650051.1:ENST00000648411.1:ENST00000648176.2:ENST00000649433.1:ENST00000648403.1:ENST00000580500.5:ENST00000649269.1:ENST00000577828.6:ENST00000580948.1:ENST00000650600.1	lncRNA	lncRNA	lncRNA	lncRNA	0	73	2	5.40477	5.545764999999999	5.68676	0.0385125	0.00338051	0.131324	0.0328791
chr7	107752444	107752544	3446283	0	+	0.42	(0.419,0.45]	chr7	333777	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CBLL1	ENSG00000105879.12	ENST00000440859.8:ENST00000222597.6:ENST00000432748.5:ENST00000487517.1:ENST00000493361.5:ENST00000415884.6:ENST00000420796.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	73	2	5.40477	5.545764999999999	5.68676	0.0385125	0.00338051	0.131324	0.0328791
chr16	85313874	85313974	6516208	0	+	0.5	(0.485,0.523]	chr16	646381	48	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.30159	5.54563	5.78967	0.0146211	0.00529578	0.0826064	0.044517
chr12	107077144	107077243	5491671	0	-	0.444444	(0.419,0.45]	chr12	540119	37	INTRON	INTRON	CRY1	ENSG00000008405.12	ENST00000008527.10:ENST00000550633.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	73	2	5.52073	5.5456199999999995	5.57051	0.0327198	0.00441471	0.122543	0.0393688
chrX	44898285	44898385	7871924	0	+	0.45	(0.419,0.45]	chrX	825082	239	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	73	2	5.52073	5.5456199999999995	5.57051	0.0327198	0.00441471	0.122543	0.0393688
chr7	76999112	76999212	3398791	0	+	0.44	(0.419,0.45]	chr7	328286	84	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	84	2	4.85365	5.5456	6.23755	0.0197641	0.0110181	0.100774	0.0708586
chr1	204081978	204082077	322139	0	+	0.606061	(0.58,1]	chr1	36272	34	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1:ENST00000528591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	71	2	5.25731	5.54553	5.83375	0.00751249	0.00358178	0.0576451	0.0342681
chr22	19910380	19910479	7765148	0	-	0.59596	(0.58,1]	chr22	813988	110	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	69	2	5.26138	5.54551	5.82964	0.021217	7.58111e-4	0.0996078	0.0117078
chr19	46977991	46978091	7275353	0	+	0.48	(0.45,0.485]	chr19	747275	402	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	72	2	5.47648	5.545394999999999	5.61431	0.0217589	0.0039628	0.100615	0.0368027
chr15	28218288	28218388	6207154	0	-	0.5	(0.485,0.523]	chr15	611112	4	SS5_PROX	SS5_PROX:INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.39869	5.545345	5.692	0.0171772	0.00421243	0.0895975	0.0380601
chr17	59129292	59129391	6934844	0	-	0.484848	(0.45,0.485]	chr17	706919	45	INTRON	INTRON	SKA2	ENSG00000182628.13	ENST00000330137.12:ENST00000580541.1:ENST00000578105.1:ENST00000578519.5:ENST00000583927.1:ENST00000581068.5:ENST00000437036.6:ENST00000583380.5:ENST00000583976.1:ENST00000584089.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	194	2	3.84298	5.545315	7.24765	0.0131965	3.05036e-5	0.0785449	0.00114349
chr12	421419	421518	5148399	0	+	0.515152	(0.485,0.523]	chr12	500517	24	INTRON	INTRON	CCDC77	ENSG00000120647.10	ENST00000540180.5:ENST00000422000.5:ENST00000543504.5:ENST00000540344.5:ENST00000412006.6:ENST00000239830.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	71	2	5.43453	5.54527	5.65601	0.0258944	0.00224147	0.109555	0.024843
chr7	98952966	98953066	3425878	0	+	0.37	(0.36,0.39]	chr7	330863	4	SS3_PROX	SS3_PROX:INTRON	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.45303	5.545115	5.6372	0.024533	0.00525731	0.106796	0.044445
chr12	108857127	108857227	5494274	0	-	0.6	(0.58,1]	chr12	540514	3	SS5_PROX	SS5_PROX:INTRON	SSH1	ENSG00000084112.15	ENST00000326495.10:ENST00000551165.5:ENST00000548522.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	69	2	5.45872	5.54495	5.63118	0.0109983	0.00211999	0.0708586	0.0239744
chr9	134341630	134341730	4260839	0	+	0.68	(0.58,1]	chr9	406311	146	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	69	2	5.45872	5.54495	5.63118	0.0109983	0.00211999	0.0708586	0.0239744
chr2	239371102	239371201	1392423	0	-	0.646465	(0.58,1]	chr2	148759	178	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	192	2	4.28451	5.54479	6.80507	0.00101308	1.76873e-4	0.0191342	0.00414413
chr13	50633297	50633397	5598960	0	+	0.36	(0.33,0.36]	chr13	551695	18	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1	lncRNA	lncRNA	lncRNA	lncRNA	1	223	2	4.83248	5.5446550000000006	6.25683	0.00220349	6.42061e-4	0.0295736	0.0104165
chr2	159764225	159764325	937783	0	+	0.42	(0.419,0.45]	chr2	103592	2	SS3_PROX	SS3_PROX:INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000420397.1:ENST00000478396.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	166	2	4.56564	5.5446100000000005	6.52358	0.00689831	7.35568e-4	0.0553728	0.0114587
chr4	708961	709061	1993717	0	+	0.4	(0.39,0.419]	chr4	203088	26	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	73	2	5.28643	5.544595	5.80276	0.041475	0.00233691	0.136301	0.0257208
chr3	129859659	129859756	1914433	0	-	0.340206	(0.33,0.36]	chr3	194458	19	INTRON	INTRON	TMCC1	ENSG00000172765.18	ENST00000393238.8:ENST00000426664.6:ENST00000648771.1:ENST00000505616.5:ENST00000505924.5:ENST00000513411.5:ENST00000512902.5:ENST00000508869.5:ENST00000503256.5:ENST00000515024.5:ENST00000508729.5:ENST00000509440.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	79	2	4.99985	5.5444700000000005	6.08909	0.0127452	0.0103694	0.0773423	0.0686683
chr5	1498286	1498385	2609722	0	-	0.515152	(0.485,0.523]	chr5	259859	30	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000514484.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	79	2	4.96361	5.54441	6.12521	0.0112713	0.00823189	0.071709	0.0608959
chr16	23072959	23073046	6567080	0	-	0.505747	(0.485,0.523]	chr16	655180	4	INTRON	INTRON	USP31	ENSG00000103404.15	ENST00000219689.12	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.5129	5.544065	5.57523	0.0229047	0.00274261	0.102982	0.028553
chr16	14178044	14178144	6400468	0	+	0.43	(0.419,0.45]	chr16	632185	77	INTRON	INTRON	MRTFB	ENSG00000186260.17	ENST00000571589.6:ENST00000574998.5:ENST00000574045.5:ENST00000318282.9:ENST00000575768.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	73	2	5.36395	5.54373	5.72351	0.0407485	0.00310292	0.135868	0.0311614
chr11	59770313	59770413	4860011	0	+	0.53	(0.523,0.58]	chr11	465484	143	INTRON	INTRON	STX3	ENSG00000166900.17	ENST00000641815.1:ENST00000337979.9:ENST00000533637.5:ENST00000633708.1:ENST00000529177.5:ENST00000530498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	71	2	5.35124	5.543665	5.73609	0.0295772	0.0017613	0.116079	0.0211077
chr10	91254136	91254236	4546200	0	+	0.44	(0.419,0.45]	chr10	433699	23	INTRON	INTRON	PCGF5	ENSG00000180628.15	ENST00000614189.4:ENST00000543648.5:ENST00000336126.6	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.52959	5.54349	5.55739	0.0310506	0.00484244	0.119758	0.0418176
chr7	47349842	47349942	3587289	0	-	0.47	(0.45,0.485]	chr7	346030	31	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.33781	5.54347	5.74913	0.017574	0.0054758	0.0906595	0.0454065
chr3	62178222	62178321	1492788	0	+	0.454545	(0.45,0.485]	chr3	160128	97	INTRON	INTRON	PTPRG	ENSG00000144724.20	ENST00000474889.6:ENST00000295874.14	protein_coding	protein_coding	protein_coding	protein_coding	1	204	2	3.53745	5.543455	7.54946	0.0221397	1.2029e-5	0.101784	5.8591e-4
chrX	1424527	1424626	7965728	0	-	0.545455	(0.523,0.58]	chrX	834272	23	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.53665	5.543385	5.55012	0.0217068	0.00291382	0.100615	0.0298557
chr14	70023547	70023647	5872618	0	+	0.42	(0.419,0.45]	chr14	573362	1	SS5_PROX	SS5_PROX:INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.20508	5.5427599999999995	5.88044	0.0192645	0.00979452	0.0954446	0.0664239
chr12	132793365	132793464	5540395	0	-	0.737374	(0.58,1]	chr12	546816	17	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	173	2	4.38234	5.542415	6.70249	0.00280346	5.11463e-5	0.033628	0.00167326
chr19	17483281	17483381	7220765	0	+	0.59	(0.58,1]	chr19	738259	122	INTRON	INTRON	SLC27A1	ENSG00000130304.17	ENST00000600277.5:ENST00000598424.5:ENST00000252595.12:ENST00000599380.5:ENST00000600297.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	80	2	4.81862	5.5423	6.26598	0.0102696	0.00318361	0.0678072	0.0360488
chr16	84125325	84125423	6649306	0	-	0.397959	(0.39,0.419]	chr16	665183	2	INTRON	INTRON	HSDL1	ENSG00000103160.12	ENST00000219439.9:ENST00000434463.7	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	4.86193	5.54228	6.22263	0.0182739	0.00991891	0.0958352	0.0671959
chr13	112973739	112973838	5655358	0	+	0.636364	(0.58,1]	chr13	555120	39	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	4.89007	5.542135	6.1942	0.00872525	0.00368616	0.0612699	0.0389784
chr9	137775934	137776025	4266066	0	+	0.549451	(0.523,0.58]	chr9	407420	3	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000638071.1:ENST00000640639.1:ENST00000462942.3:ENST00000465566.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	74	2	5.01677	5.542120000000001	6.06747	0.0482765	7.30845e-4	0.144601	0.0113963
chr14	67375245	67375344	5857972	0	+	0.50505	(0.485,0.523]	chr14	572675	3	INTRON	INTRON	EIF2S1	ENSG00000134001.15	ENST00000256383.11:ENST00000557310.5:ENST00000466499.6:ENST00000555876.1	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.35167	5.54209	5.73251	0.0294163	0.00184599	0.116079	0.0217471
chr3	71320313	71320413	1828648	0	-	0.52	(0.485,0.523]	chr3	188221	12	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000648783.1:ENST00000650156.1:ENST00000649133.1:ENST00000493010.2:ENST00000649145.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	71	2	5.35167	5.54209	5.73251	0.0294163	0.00184599	0.116079	0.0217471
chr5	148392619	148392718	2562855	0	+	0.434343	(0.419,0.45]	chr5	254487	27	INTRON	INTRON	FBXO38	ENSG00000145868.17	ENST00000296701.10:ENST00000503613.5:ENST00000340253.10:ENST00000394370.7:ENST00000508326.5:ENST00000509411.5:ENST00000511080.5:ENST00000504971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	202	2	4.01857	5.541895	7.06522	0.0119937	9.52125e-5	0.0743424	0.00262959
chr7	47376215	47376315	3587554	0	-	0.51	(0.485,0.523]	chr7	346036	62	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	71	2	5.53308	5.54181	5.55054	0.0215787	0.00304306	0.100612	0.0306636
chrX	2703636	2703736	7830402	0	+	0.49	(0.485,0.523]	chrX	822102	115	INTRON	INTRON	CD99	ENSG00000002586.20	ENST00000611428.5:ENST00000381187.8:ENST00000381184.6:ENST00000647297.1:ENST00000381192.10:ENST00000645950.1:ENST00000482405.7:ENST00000624481.4:ENST00000646103.1:ENST00000623253.4:ENST00000449611.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	71	2	5.53308	5.54181	5.55054	0.0215787	0.00304306	0.100612	0.0306636
chr10	18564262	18564362	4642371	0	-	0.43	(0.419,0.45]	chr10	443321	119	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	170	2	4.1167299999999996	5.54179	6.96685	0.00323624	0.00235149	0.0363264	0.0258525
chr3	48933103	48933203	1465069	0	+	0.54	(0.523,0.58]	chr3	156612	49	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000452882.5:ENST00000498314.5:ENST00000474618.5:ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000420814.5:ENST00000486316.5:ENST00000474936.6:ENST00000484999.5:ENST00000470296.5:ENST00000463204.5:ENST00000452385.5:ENST00000495507.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	76	2	5.08882	5.541565	5.99431	0.0104033	0.00834774	0.0686837	0.0598672
chr16	20685375	20685475	6416312	0	+	0.4	(0.39,0.419]	chr16	634386	33	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	74	2	5.14823	5.541494999999999	5.93476	0.0501234	0.00169249	0.147892	0.0204799
chr6	131836884	131836984	3008310	0	+	0.49	(0.485,0.523]	chr6	294175	104	INTRON	INTRON	ENPP1	ENSG00000197594.14	ENST00000486853.1:ENST00000647893.1:ENST00000513998.5:ENST00000650507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	155	2	4.51045	5.541295	6.57214	0.0036605	5.78208e-4	0.0389784	0.00965478
chr13	113350348	113350448	5753436	0	-	0.6	(0.58,1]	chr13	564103	1	SS5_PROX	SS5_PROX:INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	4	629	2	5.05956	5.54124	6.02292	1.26141e-4	2.13917e-6	0.00622672	1.744e-4
chr2	11585274	11585374	720731	0	+	0.56	(0.523,0.58]	chr2	84145	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000263834.9:ENST00000381483.6:ENST00000234142.9	protein_coding	protein_coding	protein_coding	protein_coding	2	415	2	5.46805	5.5410450000000004	5.61404	5.22412e-4	1.91131e-5	0.0132873	8.15957e-4
chr19	8240663	8240751	7200288	0	+	0.409091	(0.39,0.419]	chr19	734191	1	SS5_PROX	SS5_PROX:INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559490.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	74	2	5.31385	5.540710000000001	5.76757	0.0204917	0.0071966	0.0979776	0.0543014
chr21	44852127	44852226	7678353	0	-	0.383838	(0.36,0.39]	chr21	802742	1	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000397886.3	protein_coding	protein_coding	protein_coding	protein_coding	1	223	2	3.26869	5.54004	7.81139	0.016118	5.50261e-4	0.0897679	0.0136794
chr3	142964196	142964263	1592494	0	+	0.537313	(0.523,0.58]	chr3	168249	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PAQR9-AS1	ENSG00000241570.8	ENST00000627207.2:ENST00000625937.2:ENST00000594095.1:ENST00000608686.5:ENST00000497652.5:ENST00000608349.5:ENST00000607937.1:ENST00000478823.1	lncRNA	lncRNA	lncRNA	lncRNA	0	71	2	5.49322	5.5400100000000005	5.5868	0.020474	0.00324246	0.0979776	0.0319521
chr8	143487646	143487746	4096469	0	-	0.58	(0.523,0.58]	chr8	389272	23	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6:ENST00000528401.1	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.49322	5.5400100000000005	5.5868	0.020474	0.00324246	0.0979776	0.0319521
chr1	21342538	21342638	419318	0	-	0.48	(0.45,0.485]	chr1	48854	437	INTRON	INTRON	ECE1	ENSG00000117298.16	ENST00000415912.6:ENST00000649812.1:ENST00000463334.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	74	2	5.23735	5.5399650000000005	5.84258	0.0151085	0.00687715	0.0841543	0.0526888
chr3	42138969	42139069	1450918	0	+	0.49	(0.485,0.523]	chr3	154868	130	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2:ENST00000484786.5:ENST00000327628.10	protein_coding	protein_coding	protein_coding	protein_coding	1	155	2	4.45366	5.539845	6.62603	0.00330946	6.79828e-4	0.0368376	0.0108531
chr1	31414687	31414777	80071	0	+	0.566667	(0.523,0.58]	chr1	9151	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	SERINC2	ENSG00000168528.12	ENST00000373710.5:ENST00000536859.5:ENST00000487207.5:ENST00000373709.8:ENST00000536384.2:ENST00000491976.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	311	2	5.44845	5.539745	5.63104	0.00361636	3.7241e-4	0.0342681	0.011082
chr11	70819963	70820063	5062483	0	-	0.57	(0.523,0.58]	chr11	492714	2	SS5_PROX	SS5_PROX:INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	72	2	5.35452	5.539695	5.72487	0.0163679	0.00453096	0.0875379	0.0400651
chr2	239159546	239159645	1390292	0	-	0.565657	(0.523,0.58]	chr2	148698	24	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	72	2	5.35452	5.539695	5.72487	0.0163679	0.00453096	0.0875379	0.0400651
chr4	186285337	186285437	2173851	0	+	0.57	(0.523,0.58]	chr4	220295	3	SS3_PROX	SS3_PROX:INTRON	F11	ENSG00000088926.14	ENST00000403665.7:ENST00000264692.8	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.35452	5.539695	5.72487	0.0163679	0.00453096	0.0875379	0.0400651
chr22	33009715	33009814	7794763	0	-	0.313131	(0.29,0.33]	chr22	817478	25	INTRON	INTRON	SYN3	ENSG00000185666.15	ENST00000358763.7:ENST00000441821.5:ENST00000412575.1	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.1769	5.5396	5.9023	0.035586	0.00126253	0.127529	0.0167512
chr10	87221155	87221255	4723354	0	-	0.4	(0.39,0.419]	chr10	450862	74	INTRON	INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6	lncRNA	lncRNA	lncRNA	lncRNA	0	73	2	5.24182	5.539365	5.83691	0.0441194	0.00215135	0.140174	0.0241566
chr9	93661348	93661444	4184511	0	+	0.40625	(0.39,0.419]	chr9	397767	4	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.24182	5.539365	5.83691	0.0441194	0.00215135	0.140174	0.0241566
chr16	81681218	81681318	6510123	0	+	0.49	(0.485,0.523]	chr16	645979	22	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.19749	5.53932	5.88115	0.012541	0.00672953	0.0761905	0.0519464
chr1	211300870	211300968	333538	0	+	0.459184	(0.45,0.485]	chr1	37472	48	INTRON	INTRON	RCOR3	ENSG00000117625.14	ENST00000367006.8:ENST00000419091.7:ENST00000452621.6:ENST00000528926.5:ENST00000367005.8:ENST00000534460.5:ENST00000529763.5:ENST00000485186.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	158	2	4.39187	5.538985	6.6861	0.00348661	8.95692e-4	0.0379065	0.0131712
chr6	41058221	41058320	3130843	0	-	0.525253	(0.523,0.58]	chr6	305368	55	INTRON	INTRON	OARD1	ENSG00000124596.17	ENST00000482853.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	552	2	5.22366	5.538975	5.85429	2.33255e-4	1.49383e-5	0.00863036	6.82859e-4
chr16	12456646	12456746	6394441	0	+	0.5	(0.485,0.523]	chr16	631994	134	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.17012	5.538905	5.90769	0.038581	0.0011708	0.131324	0.0157899
chr8	108221803	108221903	4038923	0	-	0.31	(0.29,0.33]	chr8	385517	2	SS3_PROX	SS3_PROX:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000676530.1:ENST00000677696.1:ENST00000519517.5:ENST00000519413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	72	2	5.34562	5.538880000000001	5.73214	0.0146933	0.00501126	0.0826843	0.0429092
chr17	73299418	73299517	6969703	0	-	0.424242	(0.419,0.45]	chr17	710620	122	INTRON	INTRON	CDC42EP4	ENSG00000179604.10	ENST00000335793.4:ENST00000439510.2:ENST00000581014.1:ENST00000580315.1:ENST00000579611.1:ENST00000581045.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	75	2	5.25615	5.538755	5.82136	0.0210659	0.00879729	0.0996078	0.0615125
chr11	70812267	70812367	5062406	0	-	0.49	(0.485,0.523]	chr11	492713	47	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	71	2	5.48966	5.538444999999999	5.58723	0.0203514	0.0033837199999999998	0.0979211	0.0328791
chr7	1016724	1016824	3526390	0	-	0.66	(0.58,1]	chr7	340572	62	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	76	2	4.95814	5.5383949999999995	6.11865	0.0074469	0.00429384	0.0553519	0.042386
chr7	79130811	79130911	3623304	0	-	0.37	(0.36,0.39]	chr7	349228	1220	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000628997.1:ENST00000636424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	75	2	5.04949	5.53823	6.02697	0.0563927	0.00133548	0.154188	0.0173572
chr19	941621	941720	7185262	0	+	0.515152	(0.485,0.523]	chr19	730741	85	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	219	2	3.61659	5.53811	7.45963	0.00201487	6.49227e-4	0.0231567	0.0149631
chr18	58285213	58285313	7073880	0	+	0.45	(0.419,0.45]	chr18	721178	281	INTRON	INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000676223.1:ENST00000675147.1:ENST00000592846.5:ENST00000675801.1:ENST00000456986.5:ENST00000675502.1:ENST00000675137.1:ENST00000357895.9:ENST00000435432.6:ENST00000586263.5:ENST00000456173.6:ENST00000676251.1:ENST00000676226.1:ENST00000675865.1:ENST00000588494.5:ENST00000675221.1:ENST00000588066.5:ENST00000431212.6:ENST00000586268.5:ENST00000587190.5:ENST00000585323.5:ENST00000674636.1:ENST00000674856.1:ENST00000675434.1:ENST00000635997.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	80	2	4.98054	5.53786	6.09518	0.0154548	0.0138177	0.0869771	0.0803169
chr1	12586237	12586336	402465	0	-	0.565657	(0.523,0.58]	chr1	46222	52	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	213	2	3.7402	5.537755	7.33531	0.00139933	8.42028e-4	0.0179906	0.0172456
chr10	131957749	131957848	4616605	0	+	0.636364	(0.58,1]	chr10	441116	19	UTR3	UTR3:EXON_MRNA	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	170	2	4.11875	5.537660000000001	6.95657	0.00489075	2.19702e-5	0.0457614	8.99734e-4
chr4	123398913	123399013	2122602	0	+	0.58	(0.523,0.58]	chr4	215782	4	SS5_PROX	SS5_PROX:INTRON	SPRY1	ENSG00000164056.11	ENST00000610581.4:ENST00000651917.1:ENST00000505319.5:ENST00000339241.1:ENST00000507703.1:ENST00000622283.1	protein_coding	protein_coding	protein_coding	protein_coding	3	559	2	5.13129	5.53758	5.94387	1.93089e-4	2.01717e-5	0.00783502	8.45883e-4
chr16	85234165	85234265	6515410	0	+	0.53	(0.523,0.58]	chr16	646377	64	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	84	2	4.7629	5.537305	6.31171	0.0167014	0.00594629	0.0917029	0.0506158
chr12	121554023	121554122	5528003	0	-	0.555556	(0.523,0.58]	chr12	544653	40	INTRON	INTRON	KDM2B	ENSG00000089094.20	ENST00000377071.9:ENST00000377069.8:ENST00000611216.4:ENST00000543025.5:ENST00000538046.6:ENST00000446152.6:ENST00000539394.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	73	2	5.25403	5.53721	5.82039	0.0139724	0.00573579	0.0805959	0.0467736
chr15	31335254	31335354	6072934	0	+	0.57	(0.523,0.58]	chr15	596672	71	INTRON	INTRON	KLF13	ENSG00000169926.11	ENST00000307145.4:ENST00000558921.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	73	2	5.25403	5.53721	5.82039	0.0139724	0.00573579	0.0805959	0.0467736
chr21	38808178	38808263	7620624	0	+	0.529412	(0.523,0.58]	chr21	796139	2	UTR5	UTR5:EXON_MRNA:INTRON	ETS2	ENSG00000157557.13	ENST00000360214.8:ENST00000665212.1:ENST00000667466.1:ENST00000360938.8:ENST00000432278.5:ENST00000666778.1:ENST00000653642.1	protein_coding	protein_coding	protein_coding	protein_coding	1	167	2	3.93421	5.536765	7.13932	0.00274644	0.00124255	0.028553	0.0214257
chr3	43537519	43537619	1753905	0	-	0.49	(0.485,0.523]	chr3	180792	1044	INTRON	INTRON	ANO10	ENSG00000160746.13	ENST00000292246.8:ENST00000350459.8:ENST00000396091.7:ENST00000414522.6:ENST00000451430.6:ENST00000448045.1	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.06999	5.5367	6.00341	0.0445854	9.07333e-4	0.140478	0.0132726
chr10	18561864	18561964	4642347	0	-	0.39	(0.36,0.39]	chr10	443321	95	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	96	2	4.48559	5.536485	6.58738	0.036329	0.00521906	0.139793	0.0475638
chr21	16520818	16520918	7598595	0	+	0.3	(0.29,0.33]	chr21	794016	298	INTRON	INTRON	MIR99AHG	ENSG00000215386.14	ENST00000653129.1:ENST00000664579.1:ENST00000667485.1:ENST00000654360.1:ENST00000667199.1:ENST00000653624.1:ENST00000670888.1:ENST00000663661.1:ENST00000663776.1:ENST00000666517.1:ENST00000619222.4:ENST00000667152.1:ENST00000656642.2:ENST00000658644.1:ENST00000667869.1:ENST00000660908.1:ENST00000667804.1:ENST00000661987.1:ENST00000660532.1:ENST00000400178.7:ENST00000456342.6:ENST00000670446.1:ENST00000666636.1:ENST00000666794.1:ENST00000656817.1:ENST00000667703.1:ENST00000668571.1:ENST00000655848.1:ENST00000669276.1:ENST00000663968.1:ENST00000658724.1:ENST00000657710.1:ENST00000657060.1:ENST00000670980.1:ENST00000445461.7:ENST00000662969.1:ENST00000419952.6:ENST00000657745.1:ENST00000671437.1:ENST00000654176.1:ENST00000413645.2:ENST00000656619.1:ENST00000670538.1:ENST00000665243.1:ENST00000652811.1:ENST00000660455.1:ENST00000428669.7:ENST00000665282.1:ENST00000661403.1:ENST00000661771.1:ENST00000658514.1:ENST00000661418.1:ENST00000668889.1:ENST00000671058.1:ENST00000602901.6:ENST00000602339.5:ENST00000666860.1:ENST00000670108.1:ENST00000664445.1:ENST00000658389.1:ENST00000663412.1:ENST00000602892.5:ENST00000667011.1:ENST00000659105.2:ENST00000662279.1:ENST00000453910.6:ENST00000664910.1:ENST00000660287.1:ENST00000657977.1:ENST00000669307.1:ENST00000660213.1:ENST00000418813.6:ENST00000663516.1:ENST00000662647.1:ENST00000671218.1:ENST00000665230.1:ENST00000665189.1:ENST00000667313.1:ENST00000667374.1:ENST00000658826.1:ENST00000652938.1:ENST00000664030.1:ENST00000659192.1:ENST00000664485.1:ENST00000663933.1:ENST00000670290.1:ENST00000668830.1:ENST00000667401.1:ENST00000602620.2:ENST00000659209.1:ENST00000657520.1	lncRNA	lncRNA	lncRNA	lncRNA	0	73	2	5.24515	5.53641	5.82767	0.0124924	0.00631714	0.0761905	0.0501889
chr19	19291889	19291989	7350721	0	-	0.4	(0.39,0.419]	chr19	762073	105	INTRON	INTRON	SUGP1	ENSG00000105705.16	ENST00000589144.5:ENST00000247001.10:ENST00000588731.6:ENST00000591007.6:ENST00000587119.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	75	2	5.21344	5.53623	5.85902	0.0177874	0.00893514	0.0914273	0.0620271
chr19	10087780	10087876	7202776	0	+	0.4375	(0.419,0.45]	chr19	734605	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SHFL	ENSG00000130813.18	ENST00000592551.5:ENST00000585919.5:ENST00000253110.16:ENST00000591813.5:ENST00000587710.5:ENST00000590378.5:ENST00000397881.7:ENST00000586889.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	85	2	4.62273	5.536125	6.44952	0.103601	5.09118e-4	0.197541	0.00884498
chr11	96295788	96295888	5113094	0	-	0.31	(0.29,0.33]	chr11	496566	2019	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	1	188	2	4.34011	5.53612	6.73213	0.00454308	1.25004e-4	0.0437798	0.00324079
chr15	25016987	25017085	6064023	0	+	0.428571	(0.419,0.45]	chr15	595414	19	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	0	73	2	5.44407	5.53606	5.62805	0.0280406	0.00585948	0.113651	0.0474117
chr15	60542110	60542210	6284940	0	-	0.43	(0.419,0.45]	chr15	619503	99	INTRON	INTRON	RORA	ENSG00000069667.16	ENST00000335670.11:ENST00000261523.9:ENST00000309157.8:ENST00000449337.6:ENST00000551975.5:ENST00000560004.5:ENST00000559343.1:ENST00000558234.1:ENST00000557822.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	73	2	5.44407	5.53606	5.62805	0.0280406	0.00585948	0.113651	0.0474117
chr22	38145753	38145853	7809409	0	-	0.53	(0.523,0.58]	chr22	818742	1	SS3_PROX	SS3_PROX:INTRON	PLA2G6	ENSG00000184381.20	ENST00000332509.8:ENST00000663895.1:ENST00000335539.7:ENST00000402064.5:ENST00000668499.1:ENST00000664587.1:ENST00000655142.1:ENST00000660610.1:ENST00000665987.1:ENST00000667521.1:ENST00000673413.1:ENST00000671093.1:ENST00000668949.1:ENST00000436218.6:ENST00000427114.6:ENST00000668208.1:ENST00000471636.5:ENST00000430886.5:ENST00000479641.5:ENST00000445591.5:ENST00000452972.1:ENST00000447598.6:ENST00000435484.5:ENST00000417303.6:ENST00000455341.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	71	2	5.26332	5.536025	5.80873	0.0337698	0.00145893	0.124319	0.0184991
chr4	153486785	153486885	2151086	0	+	0.58	(0.523,0.58]	chr4	217962	125	INTRON	INTRON	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000445960.5:ENST00000409959.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	71	2	5.26332	5.536025	5.80873	0.0337698	0.00145893	0.124319	0.0184991
chr16	1728737	1728837	6371223	0	+	0.62	(0.58,1]	chr16	628838	2	SS3_PROX	SS3_PROX:INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000685565.1:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	73	2	4.88945	5.5359750000000005	6.1825	0.0388928	2.66047e-4	0.131324	0.00556524
chr12	132542126	132542225	5353037	0	+	0.646465	(0.58,1]	chr12	523670	138	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.39546	5.53594	5.67642	0.0168207	0.00117039	0.0884836	0.0157899
chr2	238448687	238448786	1074172	0	+	0.626263	(0.58,1]	chr2	116452	23	UTR3	UTR3:EXON_MRNA:INTRON	ASB1	ENSG00000065802.12	ENST00000264607.9:ENST00000481566.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	68	2	5.39546	5.53594	5.67642	0.0168207	0.00117039	0.0884836	0.0157899
chr14	23094216	23094302	5939175	0	-	0.383721	(0.36,0.39]	chr14	582244	3	INTRON	INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000262710.5:ENST00000457657.5:ENST00000555053.5	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.49224	5.53586	5.57948	0.0304242	0.00393844	0.11845	0.0367306
chr17	66393515	66393615	6784340	0	+	0.61	(0.58,1]	chr17	684232	293	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	143	2	4.67156	5.535605	6.39965	0.00241374	2.20504e-4	0.0309229	0.00485102
chr10	5648469	5648569	4622426	0	-	0.56	(0.523,0.58]	chr10	441816	1	SS5_PROX	SS5_PROX:INTRON	ASB13	ENSG00000196372.13	ENST00000357700.11:ENST00000479033.1:ENST00000459912.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	71	2	5.44845	5.535515	5.62258	0.0193313	0.00361636	0.0954446	0.0342681
chr17	77413418	77413518	6804505	0	+	0.53	(0.523,0.58]	chr17	686779	79	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	71	2	5.44845	5.535515	5.62258	0.0193313	0.00361636	0.0954446	0.0342681
chr2	11483080	11483180	719691	0	+	0.7	(0.58,1]	chr2	84084	3	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000628795.2	protein_coding	protein_coding	protein_coding	protein_coding	5	770	2	5.497	5.5354849999999995	5.57397	6.22137e-5	1.06987e-6	0.00438784	1.09095e-4
chr18	77119622	77119721	7181517	0	-	0.606061	(0.58,1]	chr18	730186	140	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1:ENST00000583798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	72	2	5.14497	5.535125	5.92528	0.0062948	0.00474658	0.0523832	0.0413976
chr12	113836587	113836686	5509234	0	-	0.484848	(0.45,0.485]	chr12	542458	129	INTRON	INTRON	RBM19	ENSG00000122965.11	ENST00000545145.6:ENST00000392561.7:ENST00000261741.10:ENST00000552384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	72	2	5.20906	5.53506	5.86106	0.0399616	0.00153611	0.133954	0.0191553
chr17	46635788	46635887	6745458	0	+	0.454545	(0.45,0.485]	chr17	679387	50	INTRON	INTRON	NSF	ENSG00000073969.18	ENST00000398238.8:ENST00000571864.5:ENST00000571172.5:ENST00000575068.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	72	2	5.20906	5.53506	5.86106	0.0399616	0.00153611	0.133954	0.0191553
chr10	14555885	14555915	4633213	0	-	0.4	(0.39,0.419]	chr10	442800	1	SS5_PROX	SS5_PROX:INTRON	FAM107B	ENSG00000065809.14	ENST00000181796.7:ENST00000622567.4:ENST00000468747.5:ENST00000378467.8:ENST00000487335.5:ENST00000378465.7:ENST00000378458.6:ENST00000478076.5:ENST00000378462.5:ENST00000492700.5:ENST00000479731.5:ENST00000468492.5:ENST00000452706.6:ENST00000475786.5:ENST00000488576.5:ENST00000442012.5:ENST00000482277.5:ENST00000472095.5:ENST00000471815.5:ENST00000464952.5:ENST00000495292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	72	2	5.41254	5.534995	5.65745	0.0347088	0.00330348	0.12648	0.0323993
chr3	9469169	9469268	1402850	0	+	0.40404	(0.39,0.419]	chr3	150230	7	EXON_MRNA	EXON_MRNA:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000406341.5:ENST00000670063.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000466242.5:ENST00000682236.1:ENST00000421188.1:ENST00000687014.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	72	2	5.49088	5.5349	5.57892	0.0309972	0.00396694	0.119758	0.0368027
chr7	137969672	137969772	3720399	0	-	0.31	(0.29,0.33]	chr7	357307	359	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5	protein_coding	protein_coding	protein_coding	protein_coding	1	155	2	4.4366	5.53477	6.63294	0.0028785	7.43934e-4	0.0341432	0.0115713
chr6	17874934	17875033	3106621	0	-	0.464646	(0.45,0.485]	chr6	301264	11	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	73	2	5.28846	5.5347100000000005	5.78096	0.0166968	0.00612862	0.0884836	0.0489549
chr19	15646263	15646363	7215417	0	+	0.55	(0.523,0.58]	chr19	737144	4	SS5_PROX	SS5_PROX:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1:ENST00000609670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	101	2	4.34118	5.534435	6.72769	0.0372357	0.00275419	0.139793	0.0332418
chr16	85425920	85426020	6517330	0	+	0.47	(0.45,0.485]	chr16	646391	666	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.38553	5.534415	5.6833	0.0195193	0.00490471	0.0955413	0.0422077
chr2	196902284	196902384	1350926	0	-	0.48	(0.45,0.485]	chr2	143454	3	SS5_PROX	SS5_PROX:INTRON	PGAP1	ENSG00000197121.15	ENST00000354764.9:ENST00000423035.5:ENST00000470179.5:ENST00000409475.5:ENST00000409188.5:ENST00000374738.3:ENST00000485830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	71	2	5.42587	5.5343350000000004	5.6428	0.0290571	0.00265386	0.116079	0.027979
chr15	34408434	34408534	6217542	0	-	0.48	(0.45,0.485]	chr15	612287	3	INTRON	INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000569781.1:ENST00000565885.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	71	2	5.46558	5.53428	5.60298	0.0273644	0.00292492	0.112372	0.029882
chr16	1740494	1740594	6371344	0	+	0.61	(0.58,1]	chr16	628852	4	SS3_PROX	SS3_PROX:INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	68	2	5.35214	5.53421	5.71628	0.0181452	0.00104668	0.0921579	0.0146403
chr7	583908	584007	3523925	0	-	0.606061	(0.58,1]	chr7	340376	42	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000400758.6:ENST00000430040.5	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.35214	5.53421	5.71628	0.0181452	0.00104668	0.0921579	0.0146403
chr7	152201146	152201245	3735101	0	-	0.373737	(0.36,0.39]	chr7	359094	13	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000683200.1:ENST00000682283.1:ENST00000473186.5:ENST00000679882.1:ENST00000680969.1:ENST00000681033.1:ENST00000682176.1:ENST00000679645.1:ENST00000683254.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	72	2	5.52987	5.53421	5.53855	0.0287883	0.00432809	0.115991	0.0389438
chr10	132711853	132711953	4618586	0	+	0.66	(0.58,1]	chr10	441181	10	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000487614.1:ENST00000498337.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	68	2	5.51813	5.533955000000001	5.54978	0.013519	0.00165911	0.0792526	0.0202545
chr11	70810868	70810968	5062392	0	-	0.59	(0.58,1]	chr11	492713	33	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	68	2	5.51813	5.533955000000001	5.54978	0.013519	0.00165911	0.0792526	0.0202545
chr9	93661060	93661156	4184508	0	+	0.583333	(0.58,1]	chr9	397767	1	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.51813	5.533955000000001	5.54978	0.013519	0.00165911	0.0792526	0.0202545
chr19	4493105	4493202	7193767	0	+	0.505155	(0.485,0.523]	chr19	732770	9	INTRON	INTRON	HDGFL2	ENSG00000167674.15	ENST00000616600.5:ENST00000621835.4:ENST00000589486.5:ENST00000615225.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	71	2	5.44489	5.533945	5.623	0.0192139	0.00377098	0.095424900000000007	0.0353672
chr8	38767296	38767396	3802228	0	+	0.51	(0.485,0.523]	chr8	365828	95	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	71	2	5.44489	5.533945	5.623	0.0192139	0.00377098	0.095424900000000007	0.0353672
chr10	21672074	21672171	4458255	0	+	0.309278	(0.29,0.33]	chr10	427000	10	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	156	2	4.31586	5.5336099999999995	6.75136	0.00228939	0.00104125	0.0302542	0.0146264
chr16	85588131	85588231	6518954	0	+	0.65	(0.58,1]	chr16	646396	314	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.20223	5.53357	5.86491	0.00707578	0.00411607	0.0558168	0.0374453
chr1	7498400	7498500	15594	0	+	0.46	(0.45,0.485]	chr1	1895	301	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	4.95056	5.53351	6.11646	0.0127826	0.00956667	0.0773423	0.0658012
chr2	7039029	7039128	712662	0	+	0.444444	(0.419,0.45]	chr2	83316	85	INTRON	INTRON	RNF144A	ENSG00000151692.15	ENST00000320892.11:ENST00000467276.5:ENST00000432850.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	74	2	5.1405	5.53341	5.92632	0.0550015	0.00191339	0.153337	0.0223437
chr4	886078	886177	2178463	0	-	0.474747	(0.45,0.485]	chr4	220626	4	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	71	2	5.38503	5.53329	5.68155	0.0308908	0.00241241	0.119556	0.0261086
chr9	129340849	129340949	4250346	0	+	0.48	(0.45,0.485]	chr9	404663	1	SS3_PROX	SS3_PROX:INTRON	LINC01503	ENSG00000233901.7	ENST00000427109.2:ENST00000654735.1:ENST00000654190.1:ENST00000657886.1:ENST00000661745.1:ENST00000436710.6:ENST00000660635.1:ENST00000657651.1:ENST00000665063.2:ENST00000667257.1:ENST00000690929.1:ENST00000654148.1:ENST00000444125.3:ENST00000666671.1:ENST00000660036.1:ENST00000657393.1:ENST00000659864.1	lncRNA	lncRNA	lncRNA	lncRNA	0	71	2	5.38503	5.53329	5.68155	0.0308908	0.00241241	0.119556	0.0261086
chr1	12582359	12582458	402426	0	-	0.414141	(0.39,0.419]	chr1	46222	13	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	72	2	5.52851	5.533245	5.53798	0.029339	0.0043589	0.116079	0.0391245
chr6	88632482	88632582	3198659	0	-	0.41	(0.39,0.419]	chr6	310392	177	INTRON	INTRON	RNGTT	ENSG00000111880.16	ENST00000369485.9:ENST00000369475.7	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.52851	5.533245	5.53798	0.029339	0.0043589	0.116079	0.0391245
chr21	44458911	44459010	7628065	0	+	0.585859	(0.58,1]	chr21	797416	16	UTR3	UTR3:EXON_MRNA	LRRC3	ENSG00000160233.8	ENST00000291592.6	protein_coding	protein_coding	protein_coding	protein_coding	1	230	2	5.31115	5.533105	5.75506	9.38062e-4	3.47809e-4	0.0135546	0.0106878
chr22	19423519	19423618	7763491	0	-	0.414141	(0.39,0.419]	chr22	813787	124	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	218	2	4.01157	5.532935	7.0543	0.00234061	9.00459e-4	0.0305023	0.0132389
chr3	38358150	38358249	1445609	0	+	0.30303	(0.29,0.33]	chr3	154173	11	INTRON	INTRON	XYLB	ENSG00000093217.11	ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	78	2	4.95831	5.532615	6.10692	0.0118616	0.00765507	0.0746945	0.0582978
chr2	87529414	87529514	847944	0	+	0.62	(0.58,1]	chr2	95749	80	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000642451.1:ENST00000644478.1:ENST00000409139.6:ENST00000644125.1:ENST00000643743.1:ENST00000643276.1:ENST00000409898.2:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000646636.1:ENST00000629257.1:ENST00000409054.2	lncRNA	lncRNA	lncRNA	lncRNA	0	69	2	5.16453	5.53254	5.90055	0.0249802	6.1741e-4	0.10758	0.0101143
chr16	48361197	48361292	6585920	0	-	0.410526	(0.39,0.419]	chr16	658398	8	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SIAH1	ENSG00000196470.12	ENST00000568007.5:ENST00000565620.5:ENST00000394725.3:ENST00000356721.3:ENST00000380006.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	162	2	4.46007	5.53191	6.60375	0.00520388	9.05282e-4	0.0475031	0.0132726
chr3	52444612	52444712	1778657	0	-	0.59	(0.58,1]	chr3	185047	3	SS5_PROX	SS5_PROX:INTRON	SEMA3G	ENSG00000010319.7	ENST00000231721.7:ENST00000465657.1:ENST00000475739.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	84	2	4.66416	5.531905	6.39965	0.0144381	0.00241374	0.0833845	0.0309229
chr9	93540922	93541022	4183394	0	+	0.38	(0.36,0.39]	chr9	397655	82	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000427765.1	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.33106	5.531785	5.73251	0.0383628	0.0027486	0.131324	0.028553
chr16	571738	571834	6368132	0	+	0.59375	(0.58,1]	chr16	627950	6	INTRON	INTRON	PIGQ	ENSG00000007541.17	ENST00000293874.2:ENST00000409527.6:ENST00000321878.10:ENST00000439574.1:ENST00000422307.6:ENST00000636657.1:ENST00000026218.9:ENST00000470411.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	69	2	5.36153	5.53172	5.70191	0.00964351	0.00273899	0.0659937	0.028553
chr17	4853118	4853218	6672084	0	+	0.66	(0.58,1]	chr17	668609	191	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	69	2	5.36153	5.53172	5.70191	0.00964351	0.00273899	0.0659937	0.028553
chr22	20083331	20083429	7686485	0	+	0.479592	(0.45,0.485]	chr22	804119	23	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000457069.1	protein_coding	protein_coding	protein_coding	protein_coding	1	157	2	4.4113	5.531689999999999	6.65208	0.00371059	8.48909e-4	0.039096	0.0126615
chr19	735210	735287	7184603	0	+	0.636364	(0.58,1]	chr19	730570	1	SS5_PROX	SS5_PROX:INTRON	PALM	ENSG00000099864.18	ENST00000338448.10:ENST00000264560.11:ENST00000589012.5:ENST00000593172.5:ENST00000633534.1:ENST00000592155.5:ENST00000590161.2:ENST00000587513.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	209	2	5.0947	5.53142	5.96814	5.74051e-4	5.06433e-4	0.0140322	0.00881473
chr1	16971067	16971167	52968	0	+	0.44	(0.419,0.45]	chr1	5336	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CROCC	ENSG00000058453.17	ENST00000375541.10	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.23407	5.531275	5.82848	0.0486006	0.00242141	0.145074	0.0261589
chr13	112818803	112818903	5653835	0	+	0.6	(0.58,1]	chr13	554939	1	SS3_PROX	SS3_PROX:INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000459908.5:ENST00000418678.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	68	2	5.30747	5.531265	5.75506	0.0196049	9.38062e-4	0.0955413	0.0135546
chr1	2182806	2182904	4464	0	+	0.55102	(0.523,0.58]	chr1	1030	5	INTRON	INTRON	PRKCZ	ENSG00000067606.17	ENST00000378567.8:ENST00000400921.6:ENST00000461106.6:ENST00000479263.5:ENST00000478770.6:ENST00000505322.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	191	2	4.37804	5.53121	6.68438	0.00458519	1.2535e-4	0.044038	0.00324328
chr9	134413484	134413584	4261568	0	+	0.61	(0.58,1]	chr9	406352	40	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000481739.2:ENST00000356384.4:ENST00000672570.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	74	2	5.02314	5.531034999999999	6.03893	0.00638322	0.00503456	0.0501889	0.0464858
chr2	127387151	127387251	1265647	0	-	0.53	(0.523,0.58]	chr2	136375	3	SS5_PROX	SS5_PROX:INTRON	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5	protein_coding	protein_coding	protein_coding	protein_coding	2	209	2	3.8269	5.530885	7.23487	0.00109593	0.00102861	0.0192522	0.0151164
chr1	24166342	24166441	427310	0	-	0.424242	(0.419,0.45]	chr1	50484	43	INTRON	INTRON	IFNLR1	ENSG00000185436.12	ENST00000327535.6:ENST00000327575.6:ENST00000374421.7:ENST00000374419.1:ENST00000374418.3	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.15214	5.530615	5.90909	0.0184411	0.0109324	0.0927235	0.0706366
chr7	133739205	133739305	3490034	0	+	0.42	(0.419,0.45]	chr7	336701	1087	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	164	2	4.48295	5.53054	6.57813	0.00629696	9.16167e-4	0.0523832	0.0133855
chr18	31928280	31928378	7142148	0	-	0.428571	(0.419,0.45]	chr18	726435	13	INTRON	INTRON	TRAPPC8	ENSG00000153339.15	ENST00000283351.10:ENST00000580104.5:ENST00000582539.5:ENST00000582513.5:ENST00000578658.1:ENST00000584876.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	164	2	4.4132	5.5305	6.6478	0.00559992	0.00110053	0.0493906	0.015138800000000001
chr7	130909715	130909814	3711073	0	-	0.545455	(0.523,0.58]	chr7	356708	250	INTRON	INTRON	ENSG00000226380	ENSG00000226380.9	ENST00000432045.6:ENST00000447307.5:ENST00000418546.1	lncRNA	lncRNA	lncRNA	lncRNA	0	71	2	5.21727	5.5305	5.84373	0.0361597	0.00133116	0.127853	0.0173248
chr3	128493531	128493630	1563231	0	+	0.575758	(0.523,0.58]	chr3	165331	31	INTRON	INTRON	GATA2-AS1	ENSG00000244300.3	ENST00000464242.1:ENST00000468377.1:ENST00000669945.1	lncRNA	lncRNA	lncRNA	lncRNA	0	81	2	4.65157	5.5301100000000005	6.40865	0.0787008	2.80789e-4	0.175203	0.00578259
chr11	71138023	71138123	5065680	0	-	0.57	(0.523,0.58]	chr11	492790	186	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.40225	5.529870000000001	5.65749	0.0182707	0.00404292	0.0921579	0.0371291
chr17	17772635	17772735	6689762	0	+	0.59	(0.58,1]	chr17	671344	481	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.25731	5.529605	5.8019	0.007984	0.00358178	0.0596361	0.0342681
chr19	1171631	1171731	7305769	0	-	0.7	(0.58,1]	chr19	753058	26	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.25731	5.529605	5.8019	0.007984	0.00358178	0.0596361	0.0342681
chr1	43965472	43965565	110816	0	+	0.451613	(0.45,0.485]	chr1	13723	8	INTRON	INTRON	IPO13	ENSG00000117408.11	ENST00000372343.8	protein_coding	protein_coding	protein_coding	protein_coding	1	158	2	4.69118	5.529425	6.36767	0.00618594	3.85858e-4	0.0519442	0.00727473
chr22	20124332	20124430	7686886	0	+	0.663265	(0.58,1]	chr22	804214	3	EXON_MRNA	EXON_MRNA:INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000331821.7:ENST00000411892.5:ENST00000423859.5:ENST00000418705.2:ENST00000448394.2:ENST00000486575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	172	2	4.39644	5.5293399999999995	6.66224	0.00271982	5.8343e-5	0.0331692	0.00183149
chr13	113497465	113497559	5658245	0	+	0.574468	(0.523,0.58]	chr13	555678	11	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000473287.1	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	4.905	5.529335	6.15367	0.0563605	5.76607e-4	0.154188	0.00963379
chr7	2042816	2042916	3530660	0	-	0.53	(0.523,0.58]	chr7	340995	278	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	75	2	4.905	5.529335	6.15367	0.0563605	5.76607e-4	0.154188	0.00963379
chr15	42878448	42878548	6243644	0	-	0.42	(0.419,0.45]	chr15	614386	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TTBK2	ENSG00000128881.18	ENST00000267890.11:ENST00000567840.5:ENST00000567274.5:ENST00000564431.5:ENST00000562880.5:ENST00000566931.1:ENST00000567485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	78	2	5.04004	5.52919	6.01834	0.015582500000000001	0.0137308	0.0849828	0.0814223
chr10	7723250	7723350	4442149	0	+	0.57	(0.523,0.58]	chr10	425525	4	SS3_PROX	SS3_PROX:INTRON	ITIH2	ENSG00000151655.19	ENST00000358415.9:ENST00000379587.4	protein_coding	protein_coding	protein_coding	protein_coding	2	220	2	4.64102	5.529175	6.41733	0.00490887	9.61228e-5	0.0457614	0.0026482
chr16	81360016	81360115	6507423	0	+	0.464646	(0.45,0.485]	chr16	645867	17	INTRON	INTRON	GAN	ENSG00000261609.8	ENST00000648349.2:ENST00000648994.2:ENST00000650388.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	72	2	5.16149	5.52796	5.89443	0.0427653	0.00141013	0.13762	0.0180659
chr17	17821220	17821320	6865733	0	-	0.58	(0.523,0.58]	chr17	695915	3	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	417	2	5.51495	5.52795	5.54095	4.49178e-4	2.62578e-5	0.0121823	0.00102025
chr6	7110000	7110100	2838099	0	+	0.39	(0.36,0.39]	chr6	277918	9	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	72	2	5.45303	5.527665	5.6023	0.0258522	0.00525731	0.109555	0.044445
chr8	27525061	27525161	3780912	0	+	0.54	(0.523,0.58]	chr8	364209	3	SS3_PROX	SS3_PROX:INTRON	EPHX2	ENSG00000120915.14	ENST00000517536.5:ENST00000520623.5:ENST00000521400.6:ENST00000521780.5:ENST00000380476.7:ENST00000518379.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	154	2	4.34417	5.527665	6.71116	0.00284169	9.01636e-4	0.033773	0.0132389
chr8	122935999	122936099	3911206	0	+	0.37	(0.36,0.39]	chr8	373489	721	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6:ENST00000534247.1	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.45303	5.527665	5.6023	0.0258522	0.00525731	0.109555	0.044445
chr12	421915	422014	5148404	0	+	0.484848	(0.45,0.485]	chr12	500517	29	INTRON	INTRON	CCDC77	ENSG00000120647.10	ENST00000540180.5:ENST00000422000.5:ENST00000543504.5:ENST00000540344.5:ENST00000412006.6:ENST00000239830.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	71	2	5.47648	5.5275099999999995	5.57854	0.0230065	0.0039628	0.102982	0.0368027
chr5	54067821	54067921	2655965	0	-	0.35	(0.33,0.36]	chr5	263511	1159	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	72	2	5.20687	5.52747	5.84807	0.041040600000000003	0.00184078	0.136289	0.0217471
chr1	70337098	70337198	507767	0	-	0.43	(0.419,0.45]	chr1	60393	6	INTRON	INTRON	ANKRD13C	ENSG00000118454.13	ENST00000370944.9:ENST00000262346.6	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.44447	5.5273900000000005	5.61031	0.0364384	0.004032	0.128173	0.0371291
chr17	57440739	57440839	6761618	0	+	0.55	(0.523,0.58]	chr17	682131	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	73	2	5.01677	5.527165	6.03756	0.0482765	7.92905e-4	0.144601	0.0120621
chr11	70535630	70535730	5059629	0	-	0.64	(0.58,1]	chr11	492663	323	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	68	2	5.26138	5.527105000000001	5.79283	0.021217	8.4246e-4	0.0996078	0.0125912
chr7	22281988	22282088	3549438	0	-	0.3	(0.29,0.33]	chr7	342967	146	INTRON	INTRON	RAPGEF5	ENSG00000136237.19	ENST00000665637.1:ENST00000344041.10:ENST00000475788.1:ENST00000405243.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	75	2	5.07997	5.527005	5.97404	0.0096909	0.00913217	0.0661757	0.0632458
chr11	70813467	70813567	5062418	0	-	0.55	(0.523,0.58]	chr11	492713	59	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	70	2	5.43411	5.526935	5.61976	0.026041	0.00236826	0.109673	0.0259199
chr12	132544615	132544714	5353062	0	+	0.525253	(0.523,0.58]	chr12	523670	163	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.43411	5.526935	5.61976	0.026041	0.00236826	0.109673	0.0259199
chr8	8832422	8832522	3935125	0	-	0.44	(0.419,0.45]	chr8	376197	104	INTRON	INTRON	MFHAS1	ENSG00000147324.11	ENST00000276282.7:ENST00000521881.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	72	2	5.40477	5.526905	5.64904	0.0385125	0.00368884	0.131324	0.0348088
chr16	979349	979448	6531832	0	-	0.717172	(0.58,1]	chr16	648726	85	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000545827.6:ENST00000570014.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	68	2	5.45872	5.526595	5.59447	0.0117666	0.00211999	0.0737098	0.0239744
chr20	37394577	37394677	7473048	0	+	0.63	(0.58,1]	chr20	778187	3	SS5_PROX	SS5_PROX:INTRON	SRC	ENSG00000197122.13	ENST00000692112.1:ENST00000692423.1:ENST00000373578.7:ENST00000373567.6:ENST00000373558.2:ENST00000358208.9:ENST00000489153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	68	2	5.45872	5.526595	5.59447	0.0117666	0.00211999	0.0737098	0.0239744
chr5	177451378	177451477	2600319	0	+	0.656566	(0.58,1]	chr5	258321	26	INTRON	INTRON	PRR7	ENSG00000131188.12	ENST00000507881.5:ENST00000323249.8:ENST00000502922.5:ENST00000510492.1	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.45872	5.526595	5.59447	0.0117666	0.00211999	0.0737098	0.0239744
chr9	134371171	134371271	4261135	0	+	0.65	(0.58,1]	chr9	406311	442	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	68	2	5.45872	5.526595	5.59447	0.0117666	0.00211999	0.0737098	0.0239744
chr19	37927750	37927850	7254474	0	+	0.38	(0.36,0.39]	chr19	743659	199	INTRON	INTRON	SIPA1L3	ENSG00000105738.11	ENST00000222345.11	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.14958	5.526515	5.90345	0.0493212	0.00181603	0.146207	0.0215865
chr10	49956329	49956425	4486720	0	+	0.260417	[0,0.29]	chr10	429091	9	INTRON	INTRON	TIMM23B	ENSG00000204152.14	ENST00000478381.5:ENST00000651259.3:ENST00000652716.1:ENST00000483296.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	69	2	5.30082	5.526505	5.75219	0.0212677	0.00142668	0.0996805	0.0182112
chr9	101064374	101064474	4201882	0	+	0.39	(0.36,0.39]	chr9	399114	349	INTRON	INTRON	PLPPR1	ENSG00000148123.15	ENST00000374874.8	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	4.99672	5.52649	6.05626	0.0604395	0.00124043	0.158506	0.0165207
chr15	78450553	78450653	6158242	0	+	0.55	(0.523,0.58]	chr15	606043	103	INTRON	INTRON	IREB2	ENSG00000136381.13	ENST00000560840.5:ENST00000559215.5:ENST00000258886.13:ENST00000558525.5:ENST00000560440.5:ENST00000558570.5:ENST00000560454.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	70	2	5.39327	5.5264299999999995	5.65959	0.0277354	0.0021416	0.112851	0.0240825
chr12	50478229	50478328	5229437	0	+	0.323232	(0.29,0.33]	chr12	507700	25	UTR3	UTR3:EXON_MRNA	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000398473.7	protein_coding	protein_coding	protein_coding	protein_coding	3	248	2	3.79875	5.52625	7.25375	8.4108e-4	6.60689e-4	0.0172456	0.0106498
chr12	132793464	132793562	5540396	0	-	0.714286	(0.58,1]	chr12	546816	18	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	233	2	3.95344	5.52625	7.09906	0.00271402	1.35452e-5	0.0331347	6.38288e-4
chr18	35015539	35015639	7044680	0	+	0.38	(0.36,0.39]	chr18	719355	96	INTRON	INTRON	MAPRE2	ENSG00000166974.13	ENST00000413393.5:ENST00000591734.5:ENST00000589180.5:ENST00000587359.5:ENST00000436190.6:ENST00000588349.6	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.10608	5.52623	5.9463800000000004	0.0151971	0.0111429	0.084474	0.071709
chr17	46105786	46105885	6916952	0	-	0.585859	(0.58,1]	chr17	704543	107	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2:ENST00000638269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	193	2	3.86807	5.52619	7.18431	6.66992e-4	4.34792e-4	0.0119405	0.0107349
chr2	105328526	105328626	1242821	0	-	0.53	(0.523,0.58]	chr2	134005	199	INTRON	INTRON	TGFBRAP1	ENSG00000135966.13	ENST00000393359.7	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.20104	5.525955	5.85087	0.0132767	0.00648051	0.0787251	0.0503748
chr14	57230381	57230470	5988917	0	-	0.348315	(0.33,0.36]	chr14	587386	1	INTRON	INTRON	EXOC5	ENSG00000070367.16	ENST00000621441.5:ENST00000413566.6:ENST00000554011.5:ENST00000340918.11:ENST00000555148.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	71	2	5.38284	5.52571	5.66858	0.0317908	0.0028562	0.121384	0.0294256
chr19	3530192	3530291	7191600	0	+	0.636364	(0.58,1]	chr19	732249	20	INTRON	INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	143	2	4.38079	5.525625	6.67046	0.00135763	5.47609e-4	0.0224546	0.0093303
chr2	239280078	239280178	1391509	0	-	0.43	(0.419,0.45]	chr2	148740	285	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	201	2	3.82361	5.525585	7.22756	0.0165146	6.01346e-5	0.0880991	0.00187442
chr21	41829230	41829330	7673614	0	-	0.4	(0.39,0.419]	chr21	801978	5	INTRON	INTRON	PRDM15	ENSG00000141956.14	ENST00000422911.6:ENST00000441787.5:ENST00000449395.6:ENST00000398548.6:ENST00000447016.6:ENST00000269844.5:ENST00000491486.5:ENST00000489661.5:ENST00000496124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	73	2	5.14823	5.525555	5.90288	0.0501234	0.00183094	0.147892	0.0216571
chr1	50959271	50959371	479729	0	-	0.41	(0.39,0.419]	chr1	56835	2	SS5_PROX	SS5_PROX:INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	75	2	4.99538	5.525535	6.05569	0.0613573	0.0012512	0.158506	0.0166412
chr1	1029329	1029428	1008	0	+	0.515152	(0.485,0.523]	chr1	166	65	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.43453	5.525359999999999	5.61619	0.0258944	0.00247695	0.109555	0.0266492
chr5	139659154	139659254	2549752	0	+	0.64	(0.58,1]	chr5	253168	76	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	4.95814	5.5253499999999995	6.09256	0.0074469	0.00452436	0.0553519	0.0436138
chr7	130909515	130909615	3711071	0	-	0.55	(0.523,0.58]	chr7	356708	248	INTRON	INTRON	ENSG00000226380	ENSG00000226380.9	ENST00000432045.6:ENST00000447307.5:ENST00000418546.1	lncRNA	lncRNA	lncRNA	lncRNA	5	318	2	3.75914	5.525335	7.29153	9.18957e-4	3.36467e-4	0.0180726	0.00659912
chr13	50727188	50727288	5599908	0	+	0.44	(0.419,0.45]	chr13	551734	8	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000652753.1:ENST00000650996.1	lncRNA	lncRNA	lncRNA	lncRNA	2	220	2	3.95311	5.5251	7.09709	0.00257476	0.0011322	0.0321387	0.0154908
chrX	51868255	51868355	7882276	0	+	0.43	(0.419,0.45]	chrX	826505	648	INTRON	INTRON	MAGED1	ENSG00000179222.18	ENST00000375772.7	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.18804	5.52494	5.86184	0.051668	0.00223565	0.148503	0.024843
chrX	77659523	77659621	8073785	0	-	0.408163	(0.39,0.419]	chrX	842163	25	INTRON	INTRON	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000624166.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	162	2	4.31149	5.52489	6.73829	0.00411485	0.00134114	0.0414433	0.0174212
chr10	18572257	18572357	4642451	0	-	0.44	(0.419,0.45]	chr10	443321	199	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	207	2	4.37693	5.5248100000000004	6.67269	0.00653055	2.80959e-4	0.0534851	0.00578259
chr17	83025280	83025380	6990800	0	-	0.54	(0.523,0.58]	chr17	715120	104	INTRON	INTRON	B3GNTL1	ENSG00000175711.9	ENST00000320865.4:ENST00000576599.5:ENST00000570947.5:ENST00000571954.5:ENST00000573629.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	70	2	5.35124	5.524789999999999	5.69834	0.0295772	0.00194036	0.116079	0.0225083
chr9	85639342	85639442	4329544	0	-	0.49	(0.485,0.523]	chr9	413610	56	INTRON	INTRON	AGTPBP1	ENSG00000135049.16	ENST00000357081.8:ENST00000376083.7:ENST00000337006.8:ENST00000628899.1	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.47425	5.5247399999999995	5.57523	0.0243396	0.00274261	0.106588	0.028553
chr13	33262860	33262960	5685226	0	-	0.54	(0.523,0.58]	chr13	558196	570	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	205	2	3.98607	5.52466	7.06325	0.0014427	6.93994e-4	0.023287	0.0109801
chr3	51667974	51668073	1472220	0	+	0.555556	(0.523,0.58]	chr3	157989	47	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	2	402	2	5.21742	5.524604999999999	5.83179	8.74016e-4	9.43896e-6	0.0176362	4.93382e-4
chr2	236025869	236025969	1067875	0	+	0.54	(0.523,0.58]	chr2	115754	106	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5:ENST00000418654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	70	2	5.51247	5.52456	5.53665	0.0230387	0.00291382	0.102982	0.0298557
chr20	21239280	21239380	7448908	0	+	0.57	(0.523,0.58]	chr20	775009	61	INTRON	INTRON	KIZ	ENSG00000088970.16	ENST00000619574.4:ENST00000620891.4:ENST00000611685.4:ENST00000616848.4:ENST00000619189.5:ENST00000616679.4:ENST00000619179.4:ENST00000621366.1:ENST00000451772.5:ENST00000419359.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	70	2	5.51247	5.52456	5.53665	0.0230387	0.00291382	0.102982	0.0298557
chr3	13205525	13205624	1691197	0	-	0.565657	(0.523,0.58]	chr3	176566	410	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.51247	5.52456	5.53665	0.0230387	0.00291382	0.102982	0.0298557
chrX	1415805	1415903	7965637	0	-	0.55102	(0.523,0.58]	chrX	834254	26	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.51247	5.52456	5.53665	0.0230387	0.00291382	0.102982	0.0298557
chr12	108856828	108856927	5494271	0	-	0.59596	(0.58,1]	chr12	540513	38	INTRON	INTRON	SSH1	ENSG00000084112.15	ENST00000326495.10:ENST00000551165.5:ENST00000548522.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	69	2	5.11355	5.524145	5.93474	0.0271806	5.58693e-4	0.112113	0.00944382
chr13	50747270	50747370	5600109	0	+	0.36	(0.33,0.36]	chr13	551734	209	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000652753.1:ENST00000650996.1	lncRNA	lncRNA	lncRNA	lncRNA	1	200	2	4.47319	5.5240849999999995	6.57498	0.00434418	2.7029e-4	0.0427656	0.00563203
chr2	166032161	166032260	1301729	0	-	0.373737	(0.36,0.39]	chr2	139675	161	INTRON	INTRON	SCN1A	ENSG00000144285.23	ENST00000641603.1:ENST00000641575.1:ENST00000641996.1:ENST00000303395.9:ENST00000674923.1:ENST00000635750.1:ENST00000636194.1:ENST00000635776.1:ENST00000637988.1:ENST00000689288.1:ENST00000640036.1:ENST00000375405.7:ENST00000671940.1:ENST00000673490.1:ENST00000637038.1:ENST00000409050.1:ENST00000637968.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	197	2	3.81067	5.523664999999999	7.23666	0.015515	4.92653e-5	0.0849828	0.00162872
chr1	149057663	149057749	583582	0	-	0.44186	(0.419,0.45]	chr1	67284	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF9	ENSG00000269713.8	ENST00000615421.4:ENST00000584027.9:ENST00000613595.4:ENST00000621074.5:ENST00000621645.4:ENST00000610300.4	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.25615	5.523515	5.79088	0.022052	0.00879729	0.101502	0.0615125
chr6	131034915	131035015	3261913	0	-	0.43	(0.419,0.45]	chr6	315599	192	INTRON	INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000392427.7:ENST00000368128.6:ENST00000527411.5:ENST00000525271.5:ENST00000528179.5:ENST00000526333.1:ENST00000530707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	74	2	5.25615	5.523515	5.79088	0.022052	0.00879729	0.101502	0.0615125
chr19	17146387	17146487	7218910	0	+	0.48	(0.45,0.485]	chr19	737731	5	INTRON	INTRON	MYO9B	ENSG00000099331.14	ENST00000682292.1:ENST00000595618.5:ENST00000594824.5:ENST00000397274.6:ENST00000595641.5	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.2551	5.523505	5.79191	0.0373953	0.00183113	0.130656	0.0216571
chr14	89415872	89415972	6028268	0	-	0.37	(0.36,0.39]	chr14	591480	30	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000555353.5:ENST00000555855.5:ENST00000555034.5:ENST00000553904.1	protein_coding	protein_coding	protein_coding	protein_coding	1	167	2	4.05723	5.52346	6.98969	0.00256597	0.00255527	0.0320164	0.0274214
chr17	37629261	37629350	6894518	0	-	0.359551	(0.33,0.36]	chr17	700177	2	INTRON	INTRON	DDX52	ENSG00000278053.5	ENST00000617633.5:ENST00000620209.4:ENST00000614307.4:ENST00000612255.4:ENST00000613633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	71	2	5.50696	5.52331	5.53966	0.0251076	0.00418696	0.107672	0.0379935
chr9	134342728	134342827	4260850	0	+	0.676768	(0.58,1]	chr9	406311	157	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	69	2	5.31036	5.52319	5.73602	0.00904546	0.00312721	0.0637469	0.0311915
chr19	576876	576975	7184163	0	+	0.555556	(0.523,0.58]	chr19	730456	11	INTRON	INTRON	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000613627.5:ENST00000576925.4:ENST00000573216.5:ENST00000572899.6:ENST00000333511.9:ENST00000353555.9:ENST00000590218.4:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000574970.2:ENST00000576984.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	88	2	4.60868	5.523115	6.43755	0.0226775	0.00473049	0.108193	0.0449253
chr7	44430601	44430700	3584500	0	-	0.464646	(0.45,0.485]	chr7	345547	25	INTRON	INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000472246.5:ENST00000464812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	71	2	5.43172	5.523015	5.61431	0.0217589	0.00440365	0.100615	0.0393688
chr20	62278076	62278175	7506889	0	+	0.616162	(0.58,1]	chr20	782712	43	INTRON	INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	193	2	3.84938	5.522995	7.19661	7.06615e-4	4.22825e-4	0.011772	0.0111608
chrX	48818512	48818612	7879397	0	+	0.48	(0.45,0.485]	chrX	826247	1	SS5_PROX	SS5_PROX:INTRON	HDAC6	ENSG00000094631.21	ENST00000376619.6:ENST00000477528.5:ENST00000334136.11:ENST00000643659.1:ENST00000643374.1:ENST00000644068.1:ENST00000643934.1:ENST00000647398.1:ENST00000486227.5:ENST00000645643.1:ENST00000486665.5:ENST00000470942.1:ENST00000480525.5:ENST00000498808.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	78	2	4.77571	5.522795	6.26988	0.0719884	5.20615e-4	0.168159	0.00899129
chr14	63505626	63505726	5992595	0	-	0.42	(0.419,0.45]	chr14	587804	514	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	72	2	5.32195	5.52273	5.72351	0.0431627	0.00310292	0.138403	0.0311614
chr6	602118	602217	3078181	0	-	0.535354	(0.523,0.58]	chr6	299385	25	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.06957	5.522684999999999	5.9758	0.0448011	9.36996e-4	0.140478	0.0135546
chr17	5412639	5412736	6844426	0	-	0.505155	(0.485,0.523]	chr17	692949	15	INTRON	INTRON	NUP88	ENSG00000108559.12	ENST00000573584.6:ENST00000225696.8:ENST00000574867.5:ENST00000572809.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	153	2	4.52889	5.52253	6.51617	0.00406194	5.4844e-4	0.0413652	0.00933876
chr1	43593495	43593594	107385	0	+	0.494949	(0.485,0.523]	chr1	13240	5	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	4	663	2	4.46736	5.52248	6.5776	0.00104258	8.45692e-7	0.0193998	9.40599e-5
chr2	73267371	73267466	1190602	0	-	0.421053	(0.419,0.45]	chr2	129026	3	INTRON	INTRON	FBXO41	ENSG00000163013.12	ENST00000295133.9:ENST00000520530.3:ENST00000521871.5	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.48746	5.522425	5.55739	0.0310506	0.00532156	0.119758	0.0446153
chr9	133802093	133802193	4428412	0	-	0.46	(0.45,0.485]	chr9	423268	39	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	1	161	2	4.11205	5.522375	6.9327	0.00220534	0.00190576	0.0295736	0.0222917
chr2	102112371	102112471	863509	0	+	0.51	(0.485,0.523]	chr2	97787	71	INTRON	INTRON	IL1R1	ENSG00000115594.12	ENST00000452403.5:ENST00000409929.5:ENST00000424272.5:ENST00000409589.5:ENST00000409329.5	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.17012	5.522215	5.87431	0.038581	0.00127835	0.131324	0.0168904
chr21	42847344	42847443	7675445	0	-	0.525253	(0.523,0.58]	chr21	802287	37	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	2	237	2	4.89489	5.5222	6.14951	0.00793972	4.31405e-5	0.0596361	0.00147833
chr1	40309737	40309837	451997	0	-	0.45	(0.419,0.45]	chr1	54429	4	SS5_PROX	SS5_PROX:INTRON	COL9A2	ENSG00000049089.15	ENST00000372748.8:ENST00000482722.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	204	2	4.29823	5.522105	6.74598	0.00747853	2.30334e-4	0.0576451	0.00498593
chr13	97339823	97339923	5631982	0	+	0.45	(0.419,0.45]	chr13	553188	50	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	169	2	4.82934	5.52206	6.21478	0.011428	3.59889e-4	0.0723462	0.00693803
chr10	132573342	132573442	4617194	0	+	0.5	(0.485,0.523]	chr10	441139	348	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	1	153	2	4.5471	5.522055	6.49701	0.00420849	5.20483e-4	0.0421454	0.00899129
chr1	1044753	1044846	1175	0	+	0.548387	(0.523,0.58]	chr1	206	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.30795	5.5220199999999995	5.73609	0.0315825	0.0017613	0.120781	0.0211077
chr22	48703334	48703434	7751301	0	+	0.58	(0.523,0.58]	chr22	812283	96	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	95	2	4.43597	5.521915	6.60786	0.0313935	0.00345115	0.127822	0.037649
chr10	103718877	103718977	4757289	0	-	0.4	(0.39,0.419]	chr10	454791	254	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	72	2	5.40772	5.5217849999999995	5.63585	0.025023	0.00585126	0.10758	0.0474117
chr16	84125228	84125325	6649305	0	-	0.412371	(0.39,0.419]	chr16	665183	1	INTRON	INTRON	HSDL1	ENSG00000103160.12	ENST00000219439.9:ENST00000434463.7	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.40772	5.5217849999999995	5.63585	0.025023	0.00585126	0.10758	0.0474117
chr20	62887897	62887995	7585188	0	-	0.540816	(0.523,0.58]	chr20	792848	8	UTR3	UTR3:EXON_MRNA:INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.49322	5.52167	5.55012	0.0217068	0.00324246	0.100615	0.0319521
chr10	131918587	131918687	4616202	0	+	0.56	(0.523,0.58]	chr10	441069	56	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	72	2	5.25403	5.521635	5.78924	0.0147166	0.00573579	0.0826843	0.0467736
chr2	235516130	235516230	1062757	0	+	0.53	(0.523,0.58]	chr2	115651	209	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	72	2	5.25403	5.521635	5.78924	0.0147166	0.00573579	0.0826843	0.0467736
chr6	161052668	161052767	3069004	0	+	0.363636	(0.36,0.39]	chr6	298388	23	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	197	2	4.21795	5.521380000000001	6.82481	0.00773166	1.5953e-4	0.0587556	0.00385227
chr9	134367678	134367778	4261100	0	+	0.71	(0.58,1]	chr9	406311	407	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	83	2	4.66416	5.52119	6.37822	0.0144381	0.00252415	0.0833845	0.031696
chr16	53081966	53082066	6454360	0	+	0.4	(0.39,0.419]	chr16	640106	265	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000561869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	162	2	4.62657	5.5211500000000004	6.41573	0.00718148	5.77346e-4	0.056408	0.00964326
chr3	51664113	51664212	1472181	0	+	0.50505	(0.485,0.523]	chr3	157989	8	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.06999	5.5211	5.97221	0.0445854	9.86421e-4	0.140478	0.0140716
chr6	2469509	2469604	2826635	0	+	0.621053	(0.58,1]	chr6	277328	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	GMDS-DT	ENSG00000250903.10	ENST00000657072.1:ENST00000659523.1:ENST00000659643.1:ENST00000660978.1:ENST00000691547.1:ENST00000654526.1:ENST00000670895.1:ENST00000657589.1:ENST00000607519.2:ENST00000662000.1:ENST00000655727.1:ENST00000606884.1	lncRNA	lncRNA	lncRNA	lncRNA	0	68	2	5.41094	5.52106	5.63118	0.0109983	0.00240622	0.0708586	0.0261006
chr9	35341729	35341829	4143748	0	+	0.62	(0.58,1]	chr9	394012	274	INTRON	INTRON	UNC13B	ENSG00000198722.15	ENST00000617908.4:ENST00000619578.4:ENST00000396787.5:ENST00000635942.2:ENST00000378495.7:ENST00000634487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	68	2	5.41094	5.52106	5.63118	0.0109983	0.00240622	0.0708586	0.0261006
chr9	95041471	95041571	4190416	0	+	0.39	(0.36,0.39]	chr9	398152	193	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000297979.9:ENST00000424143.5:ENST00000462125.5:ENST00000479161.5:ENST00000460573.5:ENST00000478603.5:ENST00000471978.5:ENST00000445181.5:ENST00000478473.1:ENST00000463372.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	169	2	4.91301	5.52106	6.12911	0.0113159	2.59134e-4	0.0722887	0.00548049
chr9	134370173	134370273	4261125	0	+	0.66	(0.58,1]	chr9	406311	432	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	144	2	4.28568	5.520865000000001	6.75605	0.00112759	7.30957e-4	0.0202727	0.0113963
chr18	77131038	77131138	7181633	0	-	0.55	(0.523,0.58]	chr18	730194	1	SS5_PROX	SS5_PROX:INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	77	2	4.96714	5.520569999999999	6.074	0.0108948	0.00906277	0.0706366	0.0637469
chr22	48702339	48702439	7751291	0	+	0.57	(0.523,0.58]	chr22	812283	86	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	77	2	4.96714	5.520569999999999	6.074	0.0108948	0.00906277	0.0706366	0.0637469
chr17	57544205	57544305	6762657	0	+	0.36	(0.33,0.36]	chr17	682152	141	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1:ENST00000674898.1:ENST00000674574.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	71	2	5.29754	5.52031	5.74308	0.0360263	0.00238447	0.127853	0.0260514
chr21	45501132	45501231	7631316	0	+	0.343434	(0.33,0.36]	chr21	797812	31	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.29754	5.52031	5.74308	0.0360263	0.00238447	0.127853	0.0260514
chr6	166334186	166334285	3301415	0	-	0.444444	(0.419,0.45]	chr6	319660	24	INTRON	INTRON	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000478705.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	164	2	4.26269	5.520245	6.7778	0.00448826	0.0016249	0.0436138	0.0200276
chr6	169597821	169597921	3303833	0	-	0.38	(0.36,0.39]	chr6	319814	145	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	168	2	4.88696	5.5201899999999995	6.15342	0.0108737	2.78875e-4	0.0707085	0.00577243
chr3	124747177	124747277	1555444	0	+	0.49	(0.485,0.523]	chr3	164821	32	UTR3	UTR3:EXON_MRNA	UMPS	ENSG00000114491.14	ENST00000232607.7	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.48966	5.520099999999999	5.55054	0.0215787	0.0033837199999999998	0.100612	0.0328791
chr2	27081052	27081152	734078	0	+	0.52	(0.485,0.523]	chr2	85642	1	SS5_PROX	SS5_PROX:INTRON	EMILIN1	ENSG00000138080.14	ENST00000380320.9	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.25048	5.520075	5.78967	0.0146211	0.0059614	0.0826064	0.0479866
chr17	17738252	17738352	6689418	0	+	0.72	(0.58,1]	chr17	671344	137	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.08534	5.51994	5.95454	0.0059453	0.00549379	0.0506158	0.0454065
chr1	63633840	63633938	157267	0	+	0.387755	(0.36,0.39]	chr1	17917	17	INTRON	INTRON	PGM1	ENSG00000079739.17	ENST00000371084.8:ENST00000650546.1:ENST00000540265.5:ENST00000371083.4	protein_coding	protein_coding	protein_coding	protein_coding	0	81	2	4.86249	5.51991	6.17733	0.0181775	0.0104543	0.0955836	0.0688771
chrX	74160282	74160382	8067859	0	-	0.45	(0.419,0.45]	chrX	841718	36	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1	lncRNA	lncRNA	lncRNA	lncRNA	0	80	2	4.91849	5.519195	6.1199	0.0174488	0.0132894	0.0928044	0.0787251
chr17	344417	344517	6821733	0	-	0.47	(0.45,0.485]	chr17	689629	31	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000577079.5:ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.28846	5.518795	5.74913	0.017574	0.00612862	0.0906595	0.0489549
chr22	35817956	35818055	7803714	0	-	0.484848	(0.45,0.485]	chr22	817770	76	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000405409.6:ENST00000695803.1:ENST00000449924.6:ENST00000414461.6:ENST00000262829.11:ENST00000695804.1:ENST00000359369.8:ENST00000695805.1:ENST00000695806.1:ENST00000416721.6:ENST00000695807.1:ENST00000473487.6:ENST00000408983.2:ENST00000491982.1:ENST00000397305.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	72	2	5.28846	5.518795	5.74913	0.017574	0.00612862	0.0906595	0.0489549
chr17	80927669	80927769	6812765	0	+	0.44	(0.419,0.45]	chr17	687960	18	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	72	2	5.44407	5.51861	5.59315	0.029494	0.00585948	0.116079	0.0474117
chr20	46724341	46724440	7488449	0	+	0.393939	(0.39,0.419]	chr20	780623	94	INTRON	INTRON	SLC2A10	ENSG00000197496.6	ENST00000359271.4:ENST00000611837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	161	2	4.56226	5.518505	6.47475	0.00649594	6.87675e-4	0.0532359	0.0109099
chr20	32579171	32579271	7544676	0	-	0.61	(0.58,1]	chr20	787431	299	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000201961.6:ENST00000485364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	365	2	4.89007	5.51829	6.14651	0.00872525	4.73591e-5	0.0612699	0.00379612
chr12	101901090	101901190	5308261	0	+	0.54	(0.523,0.58]	chr12	517148	4	SS3_PROX	SS3_PROX:INTRON	DRAM1	ENSG00000136048.14	ENST00000258534.13:ENST00000544152.5:ENST00000551403.1:ENST00000549365.1:ENST00000614926.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	70	2	5.44845	5.517625000000001	5.5868	0.020474	0.00361636	0.0979776	0.0342681
chr5	139137874	139137974	2772086	0	-	0.54	(0.523,0.58]	chr5	272009	4	SS3_PROX	SS3_PROX:INTRON	SIL1	ENSG00000120725.13	ENST00000394817.7:ENST00000265195.9:ENST00000509534.5:ENST00000508639.5:ENST00000507002.5:ENST00000505830.5:ENST00000505353.1:ENST00000504666.5:ENST00000509400.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	70	2	5.44845	5.517625000000001	5.5868	0.020474	0.00361636	0.0979776	0.0342681
chr7	1937596	1937695	3529600	0	-	0.707071	(0.58,1]	chr7	340962	3	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000450235.5:ENST00000437877.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	141	2	4.61399	5.517385	6.42078	0.00230938	2.64819e-4	0.0302623	0.00556151
chr22	29628057	29628157	7708598	0	+	0.46	(0.45,0.485]	chr22	806535	236	INTRON	INTRON	NF2	ENSG00000186575.19	ENST00000413209.6:ENST00000672805.1:ENST00000403435.5:ENST00000672461.1:ENST00000361452.8:ENST00000338641.10:ENST00000672896.1:ENST00000403999.7:ENST00000334961.11:ENST00000353887.8:ENST00000432151.5:ENST00000361676.8:ENST00000397789.3:ENST00000673312.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	71	2	5.38553	5.5173749999999995	5.64922	0.020599	0.00490471	0.0982852	0.0422077
chr8	31137759	31137858	3791529	0	+	0.464646	(0.45,0.485]	chr8	365196	49	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	71	2	5.38553	5.5173749999999995	5.64922	0.020599	0.00490471	0.0982852	0.0422077
chr17	59147369	59147469	6935026	0	-	0.35	(0.33,0.36]	chr17	706929	91	INTRON	INTRON	SKA2	ENSG00000182628.13	ENST00000330137.12:ENST00000580541.1:ENST00000578105.1:ENST00000578519.5:ENST00000583927.1:ENST00000581068.5:ENST00000437036.6:ENST00000583380.5:ENST00000583976.1:ENST00000584089.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	73	2	5.22448	5.517185	5.80989	0.0164265	0.00791583	0.0877406	0.057762
chr18	45852267	45852366	7152941	0	-	0.424242	(0.419,0.45]	chr18	727150	48	UTR3	UTR3:EXON_MRNA:INTRON	EPG5	ENSG00000152223.16	ENST00000696483.1:ENST00000696481.1:ENST00000696484.1:ENST00000282041.11:ENST00000587884.2:ENST00000590884.6:ENST00000592272.6:ENST00000696485.1:ENST00000696489.1:ENST00000586655.2:ENST00000587973.2:ENST00000696490.1:ENST00000696482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	76	2	5.09718	5.517185	5.93719	0.0176643	0.012235	0.0909046	0.0757339
chr21	35297822	35297922	7659936	0	-	0.45	(0.419,0.45]	chr21	801082	2324	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000475045.6	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.09718	5.517185	5.93719	0.0176643	0.012235	0.0909046	0.0757339
chr8	25239078	25239178	3774629	0	+	0.43	(0.419,0.45]	chr8	363466	538	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000410074.5:ENST00000481100.5	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	5.09718	5.517185	5.93719	0.0176643	0.012235	0.0909046	0.0757339
chr4	113692760	113692860	2313746	0	-	0.29	[0,0.29]	chr4	232470	306	INTRON	INTRON	CAMK2D	ENSG00000145349.18	ENST00000683023.1:ENST00000296402.9:ENST00000511664.6:ENST00000394524.7:ENST00000342666.9:ENST00000514328.5:ENST00000515496.5:ENST00000394522.7:ENST00000505990.5:ENST00000379773.6:ENST00000508738.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	70	2	5.10693	5.517175	5.92742	0.0292928	8.88991e-4	0.116079	0.0130852
chr9	98153564	98153664	4352778	0	-	0.41	(0.39,0.419]	chr9	415773	155	INTRON	INTRON	CORO2A	ENSG00000106789.13	ENST00000375077.5:ENST00000343933.9	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.09906	5.516909999999999	5.93476	0.0535378	0.00169249	0.150319	0.0204799
chr1	248854239	248854334	709835	0	-	0.505263	(0.485,0.523]	chr1	83011	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ZNF692	ENSG00000171163.16	ENST00000463519.5:ENST00000306601.9:ENST00000366471.7:ENST00000533927.5:ENST00000476503.5:ENST00000477070.6:ENST00000412341.6:ENST00000482023.5:ENST00000451251.5:ENST00000470787.6:ENST00000462037.6:ENST00000474351.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	246	2	3.7088	5.516859999999999	7.32492	8.51269e-4	8.21945e-4	0.0173632	0.0124043
chr1	43977600	43977695	110934	0	+	0.452632	(0.45,0.485]	chr1	13794	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP6V0B	ENSG00000117410.14	ENST00000532642.5:ENST00000236067.8:ENST00000471859.6:ENST00000472174.7:ENST00000468183.5:ENST00000473485.5:ENST00000498664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	75	2	4.89685	5.516814999999999	6.13678	0.0614781	7.46272e-4	0.158506	0.0115813
chr16	57628828	57628928	6466570	0	+	0.52	(0.485,0.523]	chr16	641500	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ADGRG1	ENSG00000205336.14	ENST00000565587.5:ENST00000568791.5:ENST00000570044.5:ENST00000567553.5:ENST00000565314.5:ENST00000564912.5:ENST00000562673.5:ENST00000564907.5:ENST00000568908.5:ENST00000568909.5:ENST00000566778.5:ENST00000561988.5:ENST00000561872.5:ENST00000562101.5:ENST00000567835.5:ENST00000563548.5:ENST00000569372.5:ENST00000562003.5:ENST00000561833.5:ENST00000569531.5:ENST00000561696.5:ENST00000565013.5:ENST00000562414.5:ENST00000561969.5:ENST00000568487.1:ENST00000563445.5:ENST00000562608.5:ENST00000565338.5:ENST00000567702.5:ENST00000456916.5:ENST00000567154.5:ENST00000388813.9:ENST00000563007.5:ENST00000562558.6:ENST00000566271.6:ENST00000568645.5:ENST00000563374.5:ENST00000673126.2:ENST00000562631.7:ENST00000568234.5:ENST00000566164.5:ENST00000565770.5:ENST00000672974.1:ENST00000568979.5:ENST00000567397.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	70	2	5.26375	5.51652	5.76929	0.0335928	0.00167976	0.124319	0.0203806
chr4	128860021	128860120	2132088	0	+	0.393939	(0.39,0.419]	chr4	216567	22	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.19579	5.516349999999999	5.83691	0.0469937	0.00215135	0.143232	0.0241566
chr22	48702638	48702737	7751294	0	+	0.585859	(0.58,1]	chr22	812283	89	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	80	2	4.74346	5.516299999999999	6.28914	0.0121457	0.00303562	0.0754623	0.0350226
chr12	39797732	39797832	5412546	0	-	0.43	(0.419,0.45]	chr12	530049	325	INTRON	INTRON	SLC2A13	ENSG00000151229.13	ENST00000280871.9	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.15214	5.51629	5.88044	0.0192645	0.0109324	0.0954446	0.0706366
chr17	2297530	2297607	6834954	0	-	0.441558	(0.419,0.45]	chr17	691171	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.15214	5.51629	5.88044	0.0192645	0.0109324	0.0954446	0.0706366
chr1	225878361	225878451	674428	0	-	0.588889	(0.58,1]	chr1	79330	4	INTRON	INTRON	TMEM63A	ENSG00000196187.12	ENST00000366835.8	protein_coding	protein_coding	protein_coding	protein_coding	0	89	2	4.49116	5.51628	6.5414	0.0207449	0.00179018	0.102713	0.0262802
chr17	42201343	42201441	6903092	0	-	0.44898	(0.419,0.45]	chr17	702115	23	UTR3	UTR3:EXON_MRNA	STAT5B	ENSG00000173757.10	ENST00000293328.8	protein_coding	protein_coding	protein_coding	protein_coding	1	202	2	4.25125	5.516265	6.78128	0.0081045	2.09196e-4	0.0602166	0.0046683
chr18	49046001	49046101	7158121	0	-	0.51	(0.485,0.523]	chr18	727833	14	INTRON	INTRON	DYM	ENSG00000141627.14	ENST00000675505.1:ENST00000269445.10:ENST00000442713.6:ENST00000577734.1	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.44489	5.5160599999999995	5.58723	0.0203514	0.00377098	0.0979211	0.0353672
chr8	47735106	47735206	3817003	0	+	0.5	(0.485,0.523]	chr8	367411	4	SS3_PROX	SS3_PROX:INTRON	SPIDR	ENSG00000164808.17	ENST00000541342.2:ENST00000518074.5:ENST00000297423.9:ENST00000524126.5:ENST00000522117.5:ENST00000521214.5:ENST00000519401.5:ENST00000519141.5:ENST00000517693.5:ENST00000519362.5:ENST00000517619.5:ENST00000518060.5:ENST00000588781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	70	2	5.44489	5.5160599999999995	5.58723	0.0203514	0.00377098	0.0979211	0.0353672
chr17	72920648	72920747	6967495	0	-	0.494949	(0.485,0.523]	chr17	710518	705	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	153	2	4.35375	5.515865	6.67798	0.00300122	9.01016e-4	0.0348875	0.0132389
chr16	22445626	22445726	6422258	0	+	0.4	(0.39,0.419]	chr16	635236	75	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000446662.5:ENST00000381231.5:ENST00000309865.11:ENST00000691795.1:ENST00000308347.10:ENST00000687936.1:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	71	2	5.45224	5.51558	5.57892	0.032783	0.00396694	0.122593	0.0368027
chr15	32629962	32630062	6074148	0	+	0.38	(0.36,0.39]	chr15	596753	2	SS5_PROX	SS5_PROX:INTRON	ARHGAP11A	ENSG00000198826.11	ENST00000565905.5:ENST00000361627.8:ENST00000567348.5:ENST00000563864.5:ENST00000543522.5:ENST00000562481.1	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.37307	5.5155449999999995	5.65802	0.0361409	0.003279	0.127853	0.0322062
chr5	71003022	71003115	2688342	0	-	0.473118	(0.45,0.485]	chr5	265428	2	UTR3	UTR3:EXON_MRNA:INTRON	NAIP	ENSG00000249437.8	ENST00000517649.6:ENST00000503719.6:ENST00000194097.8:ENST00000523981.5:ENST00000508426.6:ENST00000508794.6:ENST00000447012.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	74	2	5.12938	5.515525	5.90167	0.0137135	0.00873194	0.0799457	0.0612699
chr8	99238183	99238282	3879464	0	+	0.353535	(0.33,0.36]	chr8	371766	14	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1:ENST00000521932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	71	2	5.4188	5.515455	5.61211	0.022456	0.00513015	0.102751	0.0435186
chr8	143487846	143487946	4096471	0	-	0.62	(0.58,1]	chr8	389272	25	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6:ENST00000528401.1	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.43752	5.51538	5.59324	0.0156166	0.0014734	0.0849828	0.0185589
chr12	108856729	108856828	5494270	0	-	0.606061	(0.58,1]	chr12	540513	37	INTRON	INTRON	SSH1	ENSG00000084112.15	ENST00000326495.10:ENST00000551165.5:ENST00000548522.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	68	2	5.16453	5.515029999999999	5.86553	0.0249802	6.8352e-4	0.10758	0.0108717
chr17	17716930	17717030	6689204	0	+	0.63	(0.58,1]	chr17	671338	320	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.16453	5.515029999999999	5.86553	0.0249802	6.8352e-4	0.10758	0.0108717
chr11	85968935	85969035	5103475	0	-	0.41	(0.39,0.419]	chr11	495700	78	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000526548.3:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	166	2	4.05528	5.515015	6.97475	0.00270208	0.00258839	0.033007	0.027634
chr1	229294067	229294165	358846	0	+	0.530612	(0.523,0.58]	chr1	40523	49	INTRON	INTRON	RAB4A	ENSG00000168118.12	ENST00000618010.4:ENST00000366690.5:ENST00000473894.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	71	2	5.30515	5.51501	5.72487	0.0163679	0.00509102	0.0875379	0.0433513
chr2	233176370	233176469	1058397	0	+	0.545455	(0.523,0.58]	chr2	115144	49	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493632.5:ENST00000465281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	71	2	5.30515	5.51501	5.72487	0.0163679	0.00509102	0.0875379	0.0433513
chrX	154787096	154787194	8126263	0	-	0.418367	(0.39,0.419]	chrX	847142	3	INTRON	INTRON	MPP1	ENSG00000130830.15	ENST00000369534.8:ENST00000413259.7:ENST00000439370.5:ENST00000393531.5:ENST00000453245.5:ENST00000494170.1:ENST00000462825.5:ENST00000393529.5:ENST00000475943.5:ENST00000428488.1:ENST00000488754.5:ENST00000417435.5:ENST00000488694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	79	2	4.92679	5.514905	6.10302	0.0160946	0.0120635	0.0896852	0.0745226
chr11	64144264	64144363	5049020	0	-	0.525253	(0.523,0.58]	chr11	490257	175	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	73	2	4.96197	5.5147200000000005	6.06747	0.0521137	7.30845e-4	0.148503	0.0113963
chr20	31607440	31607540	7453517	0	+	0.49	(0.485,0.523]	chr20	775786	3	PRIMIRNA	PRIMIRNA	MIR3193	ENSG00000264395.1	ENST00000578262.1	miRNA	primary_miRNA	miRNA	primary_miRNA	0	80	2	4.83072	5.514445	6.19817	0.0148956	0.00723584	0.0847741	0.0565323
chr6	41723460	41723548	3132628	0	-	0.738636	(0.58,1]	chr6	305484	1	UTR5	UTR5:EXON_MRNA:INTRON	TFEB	ENSG00000112561.19	ENST00000358871.6:ENST00000373033.6:ENST00000230323.8:ENST00000677531.1:ENST00000403298.9:ENST00000420312.6:ENST00000424495.2:ENST00000678831.1:ENST00000419396.6:ENST00000416140.6:ENST00000678871.1:ENST00000394283.5:ENST00000679237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	69	2	5.0607	5.514419999999999	5.96814	0.029633	5.06433e-4	0.116079	0.00881473
chr11	70742684	70742784	5061708	0	-	0.64	(0.58,1]	chr11	492701	248	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	68	2	5.36153	5.514255	5.66698	0.0102927	0.00273899	0.0684871	0.028553
chr4	174320629	174320729	2166576	0	+	0.45	(0.419,0.45]	chr4	219394	4	INTRON	INTRON	CEP44	ENSG00000164118.13	ENST00000457424.6:ENST00000396791.7:ENST00000426172.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	72	2	5.23407	5.514200000000001	5.79433	0.0486006	0.00262626	0.145074	0.0278348
chr16	23467190	23467290	6568570	0	-	0.49	(0.485,0.523]	chr16	655371	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000567339.1:ENST00000568922.1:ENST00000566685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	257	2	3.90246	5.514115	7.12577	0.00489978	3.48268e-5	0.0457614	0.00126017
chr12	6607487	6607582	5363062	0	-	0.715789	(0.58,1]	chr12	525395	3	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CHD4	ENSG00000111642.16	ENST00000645022.1:ENST00000642810.1:ENST00000643335.1:ENST00000646787.1:ENST00000647426.1:ENST00000645265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	67	2	5.47839	5.514085	5.54978	0.0145198	0.00165911	0.0823104	0.0202545
chr12	132532868	132532967	5352944	0	+	0.676768	(0.58,1]	chr12	523670	45	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.47839	5.514085	5.54978	0.0145198	0.00165911	0.0823104	0.0202545
chr2	240624487	240624586	1075188	0	+	0.666667	(0.58,1]	chr2	116654	51	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.47839	5.514085	5.54978	0.0145198	0.00165911	0.0823104	0.0202545
chr5	651891	651990	2378801	0	+	0.606061	(0.58,1]	chr5	237646	36	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	67	2	5.47839	5.514085	5.54978	0.0145198	0.00165911	0.0823104	0.0202545
chr19	17483181	17483281	7220764	0	+	0.6	(0.58,1]	chr19	738259	121	INTRON	INTRON	SLC27A1	ENSG00000130304.17	ENST00000600277.5:ENST00000598424.5:ENST00000252595.12:ENST00000599380.5:ENST00000600297.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	152	2	3.9863	5.513955	7.04161	0.0017591	5.99793e-4	0.0211077	0.0143535
chr16	8772182	8772279	6382135	0	+	0.463918	(0.45,0.485]	chr16	631241	29	INTRON	INTRON	ABAT	ENSG00000183044.12	ENST00000268251.13:ENST00000396600.6:ENST00000566590.5:ENST00000567812.5:ENST00000425191.6:ENST00000569156.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	70	2	5.38503	5.513915000000001	5.6428	0.0308908	0.00265386	0.119556	0.027979
chr13	44405513	44405613	5700732	0	-	0.52	(0.485,0.523]	chr13	559338	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TUSC8	ENSG00000237361.4	ENST00000432701.3:ENST00000660135.2:ENST00000607312.1	lncRNA	lncRNA	lncRNA	lncRNA	1	184	2	3.57804	5.51387	7.4497	0.00685872	6.62378e-4	0.0526888	0.0151276
chr18	77018577	77018677	7180500	0	-	0.46	(0.45,0.485]	chr18	730157	9	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000580402.5:ENST00000580473.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000495162.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	83	2	4.74641	5.5138549999999995	6.2813	0.0193126	0.00719875	0.0994526	0.056408
chr16	47400414	47400514	6585198	0	-	0.47	(0.45,0.485]	chr16	658341	43	INTRON	INTRON	ITFG1	ENSG00000129636.13	ENST00000320640.11:ENST00000544001.6:ENST00000569551.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	79	2	4.88567	5.51343	6.14119	0.0146126	0.00917101	0.0837727	0.064285
chr2	15500461	15500561	1093358	0	-	0.34	(0.33,0.36]	chr2	119088	111	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000427792.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	78	2	4.93777	5.51343	6.08909	0.0144674	0.0103694	0.0833845	0.0686683
chr11	70865719	70865819	5062943	0	-	0.38	(0.36,0.39]	chr11	492724	390	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000425049.1:ENST00000645599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	71	2	5.33106	5.5134	5.69574	0.0383628	0.00299965	0.131324	0.030427
chr9	137781593	137781691	4266125	0	+	0.387755	(0.36,0.39]	chr9	407438	15	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	71	2	5.33106	5.5134	5.69574	0.0383628	0.00299965	0.131324	0.030427
chr8	143323023	143323118	4095558	0	-	0.610526	(0.58,1]	chr8	389125	13	INTRON	INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	173	2	3.73069	5.513365	7.29604	0.0106925	6.86847e-6	0.0701355	3.9491e-4
chr2	161217338	161217437	938680	0	+	0.444444	(0.419,0.45]	chr2	103669	5	INTRON	INTRON	TANK	ENSG00000136560.14	ENST00000259075.6:ENST00000432002.5:ENST00000429217.5:ENST00000406287.5:ENST00000402568.5:ENST00000457887.5:ENST00000392749.7:ENST00000432692.6:ENST00000405852.5:ENST00000456358.5:ENST00000468831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	74	2	5.20508	5.5132200000000005	5.82136	0.0210659	0.00979452	0.0996078	0.0664239
chr5	78972481	78972581	2706557	0	-	0.44	(0.419,0.45]	chr5	266741	29	INTRON	INTRON	ARSB	ENSG00000113273.17	ENST00000264914.10:ENST00000396151.7:ENST00000565165.2	protein_coding	protein_coding	protein_coding	protein_coding	1	162	2	4.39522	5.51296	6.6307	0.00576404	0.00115346	0.0500197	0.0157112
chr1	115679976	115680076	217192	0	+	0.5	(0.485,0.523]	chr1	23872	83	INTRON	INTRON	VANGL1	ENSG00000173218.15	ENST00000355485.7:ENST00000369510.8:ENST00000310260.7:ENST00000369509.1:ENST00000478369.5:ENST00000474344.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	152	2	4.45366	5.5129	6.57214	0.0036605	6.79828e-4	0.0389784	0.0108531
chr7	75935506	75935605	3396810	0	+	0.515152	(0.485,0.523]	chr7	328054	122	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000449920.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	433	2	5.29324	5.51288	5.73252	2.98675e-4	5.52772e-5	0.00982269	0.00176494
chr1	2183493	2183591	4471	0	+	0.5	(0.485,0.523]	chr1	1030	12	INTRON	INTRON	PRKCZ	ENSG00000067606.17	ENST00000378567.8:ENST00000400921.6:ENST00000461106.6:ENST00000479263.5:ENST00000478770.6:ENST00000505322.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	152	2	4.43422	5.512275	6.59033	0.00353829	7.18351e-4	0.0381878	0.0112783
chr2	200361649	200361748	986509	0	+	0.40404	(0.39,0.419]	chr2	108296	100	INTRON	INTRON	SPATS2L	ENSG00000196141.14	ENST00000439084.5:ENST00000409718.5:ENST00000358677.9:ENST00000409988.7:ENST00000409385.5:ENST00000439395.5:ENST00000444012.5:ENST00000451764.6:ENST00000360760.9:ENST00000423749.5:ENST00000457757.5:ENST00000471601.5:ENST00000428692.5:ENST00000453663.5:ENST00000409140.8:ENST00000459656.5:ENST00000471533.5:ENST00000409397.6:ENST00000619961.4:ENST00000409151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	71	2	5.49586	5.5121850000000006	5.52851	0.029339	0.00479873	0.116079	0.0416285
chr7	77803665	77803765	3401236	0	+	0.38	(0.36,0.39]	chr7	328548	43	INTRON	INTRON	PHTF2	ENSG00000006576.17	ENST00000422959.7:ENST00000416283.6:ENST00000307305.12:ENST00000424760.5:ENST00000415251.6:ENST00000275575.11	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.10608	5.512180000000001	5.91828	0.0158902	0.0111429	0.0859576	0.071709
chr5	1464135	1464235	2609364	0	-	0.6	(0.58,1]	chr5	259789	3	SS3_PROX	SS3_PROX:INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000503252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	74	2	4.95814	5.512065	6.06599	0.0074469	0.00477081	0.0553519	0.0450109
chr17	38893002	38893102	6729804	0	+	0.47	(0.45,0.485]	chr17	676446	21	INTRON	INTRON	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000585841.5:ENST00000318008.11:ENST00000443937.7:ENST00000584106.1:ENST00000435347.7:ENST00000419929.1:ENST00000581485.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	70	2	5.50422	5.512055	5.51989	0.0257993	0.00357389	0.109555	0.0342681
chr2	25829211	25829311	1109967	0	-	0.48	(0.45,0.485]	chr2	121025	225	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000497092.1	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.50422	5.512055	5.51989	0.0257993	0.00357389	0.109555	0.0342681
chr11	70791846	70791946	5062200	0	-	0.49	(0.485,0.523]	chr11	492701	740	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	205	2	3.89649	5.51192	7.12735	0.00126041	9.2245e-4	0.0215793	0.0134679
chr10	132594724	132594824	4617408	0	+	0.64	(0.58,1]	chr10	441139	562	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.30747	5.511875	5.71628	0.0196049	0.00104668	0.0955413	0.0146403
chr4	3366886	3366986	2005105	0	+	0.66	(0.58,1]	chr4	204663	235	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	67	2	5.30747	5.511875	5.71628	0.0196049	0.00104668	0.0955413	0.0146403
chr17	55414432	55414532	6930477	0	-	0.34	(0.33,0.36]	chr17	706229	2	SS3_PROX	SS3_PROX:INTRON	MMD	ENSG00000108960.9	ENST00000262065.8:ENST00000649377.1:ENST00000571578.1	protein_coding	protein_coding	protein_coding	protein_coding	2	211	2	4.07879	5.51168	6.94457	0.00225763	6.79531e-4	0.0300303	0.0108531
chr2	158590142	158590242	936295	0	+	0.33	(0.29,0.33]	chr2	103407	13	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000421462.5:ENST00000462335.1:ENST00000481115.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	70	2	5.39334	5.51159	5.62984	0.0174273	0.00448059	0.0901531	0.0398484
chr14	89169444	89169543	6025784	0	-	0.333333	(0.33,0.36]	chr14	591403	61	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000557572.1:ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.27557	5.51125	5.74693	0.0181681	0.00707628	0.0921579	0.0540197
chr10	18556668	18556768	4642295	0	-	0.41	(0.39,0.419]	chr10	443321	43	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	5.10551	5.511215	5.91692	0.0162442	0.0112089	0.0873195	0.071709
chr10	102618965	102619065	4576317	0	+	0.51	(0.485,0.523]	chr10	437256	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SUFU	ENSG00000107882.12	ENST00000369902.8:ENST00000369899.6	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.39869	5.510845	5.623	0.0192139	0.00421243	0.095424900000000007	0.0380601
chr1	228142828	228142928	358012	0	+	0.54	(0.523,0.58]	chr1	40401	6	INTRON	INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	72	2	5.20104	5.510714999999999	5.82039	0.0139724	0.00648051	0.0805959	0.0503748
chr13	113216156	113216256	5657369	0	+	0.54	(0.523,0.58]	chr13	555523	57	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000488558.2:ENST00000375440.9:ENST00000474116.5:ENST00000494985.5:ENST00000463426.5:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	72	2	5.20104	5.510714999999999	5.82039	0.0139724	0.00648051	0.0805959	0.0503748
chr17	40222535	40222635	6733227	0	+	0.46	(0.45,0.485]	chr17	677195	16	INTRON	INTRON	WIPF2	ENSG00000171475.14	ENST00000323571.9:ENST00000583268.1:ENST00000494757.5:ENST00000582781.5:ENST00000585043.5:ENST00000394103.7:ENST00000583130.5:ENST00000584296.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	71	2	5.33781	5.510555	5.6833	0.0195193	0.0054758	0.0955413	0.0454065
chr2	111297131	111297231	1251598	0	-	0.44	(0.419,0.45]	chr2	134852	34	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000673962.1:ENST00000674132.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000662889.1:ENST00000665096.1:ENST00000674092.1:ENST00000673958.1:ENST00000673770.1:ENST00000673961.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000656303.1:ENST00000666367.1:ENST00000666652.1:ENST00000669050.1:ENST00000667218.1:ENST00000656067.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000673700.1:ENST00000443467.6:ENST00000451884.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000655573.1:ENST00000656416.1:ENST00000662384.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1	lncRNA	lncRNA	lncRNA	lncRNA	1	168	2	4.82934	5.51049	6.19164	0.0118587	3.59889e-4	0.0740271	0.00693803
chr13	20046657	20046757	5543693	0	+	0.28	[0,0.29]	chr13	547265	94	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000382883.7:ENST00000382870.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	68	2	5.50928	5.51037	5.51146	0.0147753	0.00267774	0.0829204	0.0282006
chr13	98451873	98451973	5747024	0	-	0.52	(0.485,0.523]	chr13	563284	68	UTR3	UTR3:EXON_MRNA	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000376554.8	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.01719	5.5103	6.00341	0.0480495	9.07333e-4	0.144601	0.0132726
chr3	51975704	51975802	1472717	0	+	0.510204	(0.485,0.523]	chr3	158083	1	INTRON	INTRON	ABHD14A	ENSG00000248487.10	ENST00000497864.5:ENST00000494478.5:ENST00000273596.8:ENST00000474575.1:ENST00000491470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	72	2	5.01719	5.5103	6.00341	0.0480495	9.07333e-4	0.144601	0.0132726
chr14	68952634	68952733	5999880	0	-	0.494949	(0.485,0.523]	chr14	588759	52	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6:ENST00000683261.1:ENST00000553370.5:ENST00000682602.1:ENST00000556571.1:ENST00000553659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	75	2	5.02573	5.510235	5.99474	0.0103305	0.00985879	0.0684871	0.0664239
chr17	59129391	59129490	6934845	0	-	0.333333	(0.33,0.36]	chr17	706919	46	INTRON	INTRON	SKA2	ENSG00000182628.13	ENST00000330137.12:ENST00000580541.1:ENST00000578105.1:ENST00000578519.5:ENST00000583927.1:ENST00000581068.5:ENST00000437036.6:ENST00000583380.5:ENST00000583976.1:ENST00000584089.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	157	2	4.38776	5.510155	6.63255	0.0040075	0.00100301	0.0410079	0.0142502
chr16	67967167	67967263	6610223	0	-	0.5	(0.485,0.523]	chr16	661575	4	INTRON	INTRON	SLC12A4	ENSG00000124067.17	ENST00000422611.6:ENST00000316341.8:ENST00000572037.5:ENST00000570802.5:ENST00000576616.5:ENST00000573023.6:ENST00000576377.1:ENST00000571299.5:ENST00000572010.5:ENST00000576462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	204	2	3.94342	5.51003	7.07664	0.00139256	8.06579e-4	0.022808	0.0122159
chr4	3099894	3099991	2002828	0	+	0.453608	(0.45,0.485]	chr4	204282	1	INTRON	INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000680291.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	70	2	5.29973	5.509505000000001	5.71928	0.035042	0.00219685	0.12704	0.0245167
chr6	158566625	158566725	3063961	0	+	0.57	(0.523,0.58]	chr6	297687	60	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	2	300	2	4.47635	5.509415000000001	6.54248	0.00158736	1.90498e-4	0.0245893	0.0043642
chr1	39116506	39116606	93786	0	+	0.34	(0.33,0.36]	chr1	11068	104	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000689911.1:ENST00000567887.5:ENST00000372915.8:ENST00000472385.2:ENST00000693209.1:ENST00000524432.5:ENST00000467673.5:ENST00000688212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	75	2	4.89468	5.509215	6.12375	0.0629186	9.1162e-4	0.160778	0.0133249
chr9	93662117	93662213	4184519	0	+	0.40625	(0.39,0.419]	chr9	397767	12	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.28643	5.5091850000000004	5.73194	0.041475	0.00276973	0.136301	0.0286873
chr10	34573650	34573750	4669390	0	-	0.46	(0.45,0.485]	chr10	445529	561	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.47648	5.509169999999999	5.54186	0.0243502	0.0039628	0.106588	0.0368027
chr2	11580007	11580105	720673	0	+	0.479592	(0.45,0.485]	chr2	84132	12	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000263834.9:ENST00000389825.7:ENST00000381483.6:ENST00000234142.9	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.47648	5.509169999999999	5.54186	0.0243502	0.0039628	0.106588	0.0368027
chr2	235511234	235511334	1062708	0	+	0.53	(0.523,0.58]	chr2	115651	160	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	153	2	4.2576599999999996	5.508915	6.76017	0.00258949	0.00114788	0.0321874	0.0156784
chr3	10887792	10887892	1408410	0	+	0.41	(0.39,0.419]	chr3	151278	123	INTRON	INTRON	SLC6A11	ENSG00000132164.10	ENST00000254488.7	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	4.55943	5.5087150000000005	6.458	0.104562	4.39359e-4	0.19835	0.00798319
chr10	18571757	18571857	4642446	0	-	0.4	(0.39,0.419]	chr10	443321	194	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	160	2	4.31149	5.508655	6.70582	0.00435618	0.00134114	0.0427656	0.0174212
chr6	116587644	116587744	2990282	0	+	0.4	(0.39,0.419]	chr6	292900	24	INTRON	INTRON	RWDD1	ENSG00000111832.13	ENST00000368590.9:ENST00000487832.6:ENST00000466444.7:ENST00000518117.5:ENST00000468204.2	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.31385	5.50853	5.70321	0.0226065	0.0071966	0.102982	0.0543014
chr6	35494799	35494899	3125643	0	-	0.59	(0.58,1]	chr6	304825	77	INTRON	INTRON	TEAD3	ENSG00000007866.22	ENST00000338863.13:ENST00000402886.9:ENST00000639578.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	67	2	5.26138	5.50822	5.75506	0.021217	9.38062e-4	0.0996078	0.0135546
chr6	158040135	158040234	3059899	0	+	0.444444	(0.419,0.45]	chr6	297390	61	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	914	2	4.82151	5.50817	6.19483	2.28945e-4	2.47226e-5	0.00852546	9.80853e-4
chr6	143061113	143061166	3013429	0	+	0.603774	(0.58,1]	chr6	294852	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000367596.5	protein_coding	protein_coding	protein_coding	protein_coding	1	140	2	4.55404	5.50808	6.46212	0.00211728	3.19972e-4	0.028892	0.00635576
chr6	166930191	166930291	3301778	0	-	0.41	(0.39,0.419]	chr6	319708	4	SS3_PROX	SS3_PROX:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000510083.1:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000467705.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	201	2	3.41977	5.50804	7.59631	0.0116434	8.58525e-4	0.0736274	0.01745
chr22	32672058	32672158	7791379	0	-	0.49	(0.485,0.523]	chr22	817442	418	INTRON	INTRON	SYN3	ENSG00000185666.15	ENST00000358763.7:ENST00000462268.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	76	2	4.78426	5.50783	6.2314	0.0660335	4.86354e-4	0.162385	0.00857996
chr1	1027140	1027240	986	0	+	0.65	(0.58,1]	chr1	166	43	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.45872	5.507764999999999	5.55681	0.0126042	0.00211999	0.0761905	0.0239744
chr5	1604232	1604332	2610324	0	-	0.59	(0.58,1]	chr5	259937	11	INTRON	INTRON	PDCD6P1	ENSG00000188002.11	ENST00000507841.5:ENST00000512335.5:ENST00000692393.1:ENST00000507290.5:ENST00000690809.1:ENST00000688433.1:ENST00000507505.5:ENST00000691115.1:ENST00000502273.7:ENST00000522848.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	67	2	5.45872	5.507764999999999	5.55681	0.0126042	0.00211999	0.0761905	0.0239744
chr6	167940734	167940834	3074508	0	+	0.58	(0.523,0.58]	chr6	298923	76	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7:ENST00000507679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	76	2	4.96714	5.50753	6.04792	0.0108948	0.00948306	0.0706366	0.0656057
chr3	58103281	58103369	1484000	0	+	0.522727	(0.485,0.523]	chr3	159632	6	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1:ENST00000493452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	196	2	4.56397	5.50751	6.45105	0.00319214	2.61322e-4	0.0361225	0.00551565
chr2	159764125	159764225	937782	0	+	0.3	(0.29,0.33]	chr2	103592	1	SS3_PROX	SS3_PROX:INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000420397.1:ENST00000478396.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	400	2	5.38567	5.50711	5.62855	5.44984e-4	2.06246e-5	0.0136434	8.58445e-4
chr2	102120271	102120371	863588	0	+	0.4	(0.39,0.419]	chr2	97787	150	INTRON	INTRON	IL1R1	ENSG00000115594.12	ENST00000452403.5:ENST00000409929.5:ENST00000424272.5:ENST00000409589.5:ENST00000409329.5	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.04815	5.507054999999999	5.96596	0.0572698	0.00156652	0.154343	0.0194594
chr8	10767909	10768008	3935770	0	-	0.626263	(0.58,1]	chr8	376214	16	INTRON	INTRON	PINX1	ENSG00000254093.9	ENST00000314787.8:ENST00000519088.5:ENST00000524114.5:ENST00000523559.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	71	2	4.88945	5.506945	6.12444	0.0388928	3.17437e-4	0.131324	0.00632787
chr12	56746577	56746676	5438814	0	-	0.535354	(0.523,0.58]	chr12	535013	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRIM1	ENSG00000198056.15	ENST00000672280.1:ENST00000338193.11:ENST00000552590.6:ENST00000550770.1:ENST00000550224.5:ENST00000546761.5:ENST00000548173.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	69	2	5.43411	5.506455000000001	5.5788	0.026041	0.00262418	0.109673	0.0278348
chr16	87918261	87918361	6657548	0	-	0.58	(0.523,0.58]	chr16	666059	130	INTRON	INTRON	CA5A	ENSG00000174990.8	ENST00000649158.1:ENST00000648177.1:ENST00000649794.3:ENST00000648022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	69	2	5.43411	5.506455000000001	5.5788	0.026041	0.00262418	0.109673	0.0278348
chr17	37494520	37494620	6727590	0	+	0.45	(0.419,0.45]	chr17	676103	25	INTRON	INTRON	DUSP14	ENSG00000276023.5	ENST00000617516.5:ENST00000613659.1	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.4831	5.506345	5.52959	0.0345118	0.00484244	0.126025	0.0418176
chr16	50155258	50155358	6448414	0	+	0.45	(0.419,0.45]	chr16	639560	6	INTRON	INTRON	TENT4B	ENSG00000121274.14	ENST00000436909.8:ENST00000561678.7:ENST00000562717.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	445	2	5.22203	5.50617	5.79031	0.00143672	2.28238e-5	0.0232451	9.2678e-4
chr10	5648669	5648769	4622428	0	-	0.62	(0.58,1]	chr10	441816	3	SS5_PROX	SS5_PROX:INTRON	ASB13	ENSG00000196372.13	ENST00000357700.11:ENST00000479033.1:ENST00000459912.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	68	2	5.31036	5.5061350000000004	5.70191	0.00964351	0.00312721	0.0659937	0.0311915
chr10	5648769	5648869	4622429	0	-	0.6	(0.58,1]	chr10	441816	4	SS5_PROX	SS5_PROX:INTRON	ASB13	ENSG00000196372.13	ENST00000357700.11:ENST00000479033.1:ENST00000459912.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	68	2	5.31036	5.5061350000000004	5.70191	0.00964351	0.00312721	0.0659937	0.0311915
chr18	79358056	79358155	7099866	0	+	0.656566	(0.58,1]	chr18	722963	95	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000426216.6:ENST00000307671.12:ENST00000490210.6:ENST00000590477.5:ENST00000589951.5:ENST00000588921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	352	2	5.40481	5.505975	5.60714	2.79371e-4	9.43422e-6	0.00949286	4.93382e-4
chr13	113503395	113503495	5658309	0	+	0.33	(0.29,0.33]	chr13	555699	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000462877.5:ENST00000622371.1	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.07676	5.50584	5.93492	0.0412683	0.00115909	0.136301	0.0157704
chr14	69112767	69112867	6000782	0	-	0.31	(0.29,0.33]	chr14	588817	205	INTRON	INTRON	DCAF5	ENSG00000139990.18	ENST00000341516.10:ENST00000554215.5:ENST00000556847.5:ENST00000557386.5:ENST00000553293.5:ENST00000556111.1:ENST00000389997.10:ENST00000554681.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	69	2	5.40051	5.5056650000000005	5.61082	0.0252356	0.00264971	0.108065	0.027979
chr16	84757518	84757617	6514407	0	+	0.30303	(0.29,0.33]	chr16	646296	115	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000563892.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	69	2	5.44135	5.50561	5.56987	0.0236557	0.0029307	0.105002	0.0298918
chr10	117342900	117342999	4770531	0	-	0.484848	(0.45,0.485]	chr10	455983	14	INTRON	INTRON	PDZD8	ENSG00000165650.12	ENST00000334464.7:ENST00000489491.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	70	2	5.2551	5.505575	5.75605	0.0373953	0.002004	0.130656	0.0230381
chr5	108330702	108330802	2739294	0	-	0.46	(0.45,0.485]	chr5	268863	1061	INTRON	INTRON	FBXL17	ENSG00000145743.18	ENST00000542267.7:ENST00000496714.2:ENST00000481160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	70	2	5.2551	5.505575	5.75605	0.0373953	0.002004	0.130656	0.0230381
chr1	5873672	5873756	386551	0	-	0.595238	(0.58,1]	chr1	44374	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NPHP4	ENSG00000131697.18	ENST00000378156.9:ENST00000478423.6:ENST00000489180.6:ENST00000378169.7:ENST00000468253.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	145	2	4.94491	5.50545	6.06599	0.00477081	9.06847e-5	0.0450109	0.00254217
chr16	57373924	57374022	6466003	0	+	0.561224	(0.523,0.58]	chr16	641365	9	INTRON	INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.35124	5.505414999999999	5.65959	0.0295772	0.0021416	0.116079	0.0240825
chr11	70685008	70685108	5061129	0	-	0.61	(0.58,1]	chr11	492688	150	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	71	2	5.08534	5.50531	5.92528	0.0062948	0.00549379	0.0523832	0.0454065
chr19	2204753	2204851	7188906	0	+	0.602041	(0.58,1]	chr19	731581	16	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.08534	5.50531	5.92528	0.0062948	0.00549379	0.0523832	0.0454065
chr2	239344884	239344984	1392159	0	-	0.61	(0.58,1]	chr2	148752	204	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	351	2	5.38373	5.505205	5.62668	2.93527e-4	8.80724e-6	0.00972826	4.68379e-4
chr6	3351761	3351861	3087007	0	-	0.49	(0.485,0.523]	chr6	299774	274	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000496753.1:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	70	2	5.17012	5.505129999999999	5.84014	0.038581	0.00139792	0.131324	0.0179863
chr19	6678330	6678371	7322499	0	-	0.682927	(0.58,1]	chr19	756367	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000599899.5:ENST00000695690.1:ENST00000695691.1:ENST00000695689.1:ENST00000695653.1:ENST00000695654.1:ENST00000602229.1:ENST00000599668.1:ENST00000601008.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	72	2	4.82753	5.505015	6.1825	0.0427798	2.66047e-4	0.13762	0.00556524
chr11	70586429	70586529	5060137	0	-	0.61	(0.58,1]	chr11	492663	831	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	70	2	5.14497	5.5049399999999995	5.86491	0.00707578	0.00474658	0.0558168	0.0413976
chr4	3414944	3415044	2005597	0	+	0.66	(0.58,1]	chr4	204697	1	SS5_PROX	SS5_PROX:INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000513784.7:ENST00000338806.4:ENST00000506998.5:ENST00000508158.5:ENST00000504194.5:ENST00000512266.5:ENST00000513991.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	70	2	5.14497	5.5049399999999995	5.86491	0.00707578	0.00474658	0.0558168	0.0413976
chrX	1417772	1417872	7965657	0	-	0.52	(0.485,0.523]	chrX	834255	4	SS5_PROX	SS5_PROX:INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.39369	5.5049399999999995	5.61619	0.0275819	0.00247695	0.112782	0.0266492
chr11	16926283	16926383	5010831	0	-	0.49	(0.485,0.523]	chr11	484333	129	INTRON	INTRON	PLEKHA7	ENSG00000166689.17	ENST00000531066.6:ENST00000355661.7:ENST00000532079.1:ENST00000529213.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	69	2	5.43453	5.50488	5.57523	0.0258944	0.00274261	0.109555	0.028553
chr16	85385138	85385238	6516922	0	+	0.7	(0.58,1]	chr16	646391	258	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	4.74346	5.50472	6.26598	0.0121457	0.00318361	0.0754623	0.0360488
chr11	68331573	68331673	4882273	0	+	0.46	(0.45,0.485]	chr11	470542	184	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	171	2	3.79448	5.504685	7.21489	0.00430151	0.00128871	0.0387835	0.0219081
chr1	29289282	29289382	78920	0	+	0.42	(0.419,0.45]	chr1	8984	2	SS3_PROX	SS3_PROX:INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2:ENST00000415600.6:ENST00000531385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	75	2	4.9329	5.5044249999999995	6.07595	0.0716557	0.00132452	0.168159	0.0173138
chr10	18568259	18568359	4642411	0	-	0.37	(0.36,0.39]	chr10	443321	159	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	193	2	4.08531	5.504405	6.9235	0.00973848	1.20889e-4	0.0664752	0.00316489
chr1	91012751	91012851	525636	0	-	0.32	(0.29,0.33]	chr1	61801	300	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	69	2	5.48107	5.504395000000001	5.52772	0.0222022	0.00324812	0.101857	0.0319647
chr9	133853491	133853591	4428933	0	-	0.61	(0.58,1]	chr9	423304	188	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	1	140	2	4.44822	5.50439	6.56056	0.00171861	4.4502e-4	0.025659	0.00806076
chr7	29461814	29461914	3336979	0	+	0.48	(0.45,0.485]	chr7	322914	606	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000474070.5:ENST00000222792.11:ENST00000446446.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	207	2	3.92807	5.504375	7.08068	0.00166658	9.3201e-4	0.0252632	0.0135546
chr11	14470849	14470947	4999792	0	-	0.408163	(0.39,0.419]	chr11	483818	9	INTRON	INTRON	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.40772	5.504335	5.60095	0.0263614	0.00585126	0.110638	0.0474117
chr7	78482837	78482937	3616797	0	-	0.4	(0.39,0.419]	chr7	349124	255	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000628980.2:ENST00000419488.5:ENST00000629359.2:ENST00000535697.5:ENST00000637441.1:ENST00000626691.2:ENST00000522391.3:ENST00000637282.1:ENST00000637486.1:ENST00000519748.5:ENST00000636178.1:ENST00000520379.2:ENST00000636039.1:ENST00000630991.2:ENST00000628781.1:ENST00000636717.1:ENST00000634996.1:ENST00000637074.1:ENST00000637136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	71	2	5.40772	5.504335	5.60095	0.0263614	0.00585126	0.110638	0.0474117
chr15	43794068	43794164	6092366	0	+	0.447917	(0.419,0.45]	chr15	599703	2	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SERF2	ENSG00000140264.21	ENST00000381359.5:ENST00000630046.2:ENST00000249786.9:ENST00000409646.5:ENST00000409960.6:ENST00000445816.5:ENST00000409291.5:ENST00000409617.6:ENST00000448830.2:ENST00000430901.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	71	2	5.48746	5.5040949999999995	5.52073	0.0327198	0.00532156	0.122543	0.0446153
chr4	113692360	113692460	2313742	0	-	0.29	[0,0.29]	chr4	232470	302	INTRON	INTRON	CAMK2D	ENSG00000145349.18	ENST00000683023.1:ENST00000296402.9:ENST00000511664.6:ENST00000394524.7:ENST00000342666.9:ENST00000514328.5:ENST00000515496.5:ENST00000394522.7:ENST00000505990.5:ENST00000379773.6:ENST00000508738.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	75	2	4.75627	5.503735	6.2512	0.050276	3.56971e-4	0.148161	0.00688785
chr21	46227229	46227318	7680535	0	-	0.573034	(0.523,0.58]	chr21	803152	3	SS5_PROX	SS5_PROX:INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5:ENST00000464357.1:ENST00000450351.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	81	2	4.7629	5.50366	6.24442	0.0167014	0.00670944	0.0917029	0.0541591
chr10	76062482	76062582	4526798	0	+	0.47	(0.45,0.485]	chr10	432311	33	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	71	2	5.1123	5.5033650000000005	5.89443	0.0458344	0.00141013	0.142336	0.0180659
chr2	174211073	174211173	1320565	0	-	0.47	(0.45,0.485]	chr2	141020	687	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.1123	5.5033650000000005	5.89443	0.0458344	0.00141013	0.142336	0.0180659
chr16	1459917	1460017	6532772	0	-	0.68	(0.58,1]	chr16	648975	1	SS5_PROX	SS5_PROX:INTRON	CLCN7	ENSG00000103249.18	ENST00000382745.9:ENST00000448525.5:ENST00000262318.12:ENST00000569851.6	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.00585	5.50332	6.00079	0.0323732	4.59827e-4	0.121593	0.00821903
chr3	13203025	13203125	1691172	0	-	0.61	(0.58,1]	chr3	176566	385	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.21377	5.5033	5.79283	0.0230012	8.4246e-4	0.102982	0.0125912
chr4	2825496	2825596	2000373	0	+	0.52	(0.485,0.523]	chr4	203973	3	SS5_PROX	SS5_PROX:INTRON	SH3BP2	ENSG00000087266.17	ENST00000503393.8:ENST00000504294.5:ENST00000508385.5:ENST00000511663.5:ENST00000512014.5:ENST00000435136.8:ENST00000511185.5:ENST00000511747.6:ENST00000356331.9:ENST00000515737.5:ENST00000515183.5:ENST00000505941.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	151	2	4.52889	5.503245	6.4776	0.00436205	5.4844e-4	0.0427656	0.00933876
chr13	112973838	112973938	5655359	0	+	0.6	(0.58,1]	chr13	555120	40	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.02314	5.50318	5.98322	0.00638322	0.00562007	0.0501889	0.0493906
chr13	113029727	113029825	5655926	0	+	0.622449	(0.58,1]	chr13	555157	28	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486806.1:ENST00000473345.5	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.02314	5.50318	5.98322	0.00638322	0.00562007	0.0501889	0.0493906
chr6	3146055	3146154	2828599	0	+	0.616162	(0.58,1]	chr6	277604	52	INTRON	INTRON	BPHL	ENSG00000137274.13	ENST00000434640.5:ENST00000430655.6:ENST00000424847.6:ENST00000433912.5:ENST00000380379.10:ENST00000490918.5:ENST00000380375.4:ENST00000488487.2:ENST00000423798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	72	2	5.02314	5.50318	5.98322	0.00638322	0.00562007	0.0501889	0.0493906
chr17	72555229	72555329	6963863	0	-	0.6	(0.58,1]	chr17	710389	208	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	144	2	4.91344	5.503	6.09256	0.00452436	1.00604e-4	0.0436138	0.00275314
chr20	62273108	62273208	7506838	0	+	0.53	(0.523,0.58]	chr20	782706	4	SS3_PROX	SS3_PROX:INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000642957.1:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	69	2	5.49322	5.502845000000001	5.51247	0.0230387	0.00324246	0.102982	0.0319521
chr3	133773427	133773524	1572468	0	+	0.505155	(0.485,0.523]	chr3	166768	8	EXON_MRNA	EXON_MRNA:INTRON	TF	ENSG00000091513.16	ENST00000402696.9:ENST00000461695.1:ENST00000467842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	472	2	4.99466	5.50273	6.0108	1.66029e-4	1.38525e-4	0.00722822	0.00347765
chr12	132533365	132533465	5352949	0	+	0.66	(0.58,1]	chr12	523670	50	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.41094	5.502705000000001	5.59447	0.0117666	0.00240622	0.0737098	0.0261006
chr5	1055581	1055681	2608376	0	-	0.71	(0.58,1]	chr5	259538	17	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10:ENST00000634447.1	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.41094	5.502705000000001	5.59447	0.0117666	0.00240622	0.0737098	0.0261006
chr17	82718571	82718671	6818064	0	+	0.48	(0.45,0.485]	chr17	689124	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	155	2	4.26942	5.50254	6.73566	0.00318291	0.00125147	0.0360488	0.0166412
chr3	126755782	126755882	1557050	0	+	0.46	(0.45,0.485]	chr3	164878	222	INTRON	INTRON	CHCHD6	ENSG00000159685.11	ENST00000290913.8:ENST00000503119.5:ENST00000508789.5:ENST00000514908.5:ENST00000513253.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	71	2	5.28846	5.502525	5.71659	0.018513	0.00612862	0.0928429	0.0489549
chr1	7499600	7499700	15606	0	+	0.5	(0.485,0.523]	chr1	1895	313	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	4.83072	5.50249	6.17426	0.0148956	0.00754939	0.0847741	0.0578091
chr5	1328894	1328992	2609104	0	-	0.5	(0.485,0.523]	chr5	259719	26	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	211	2	4.48818	5.502174999999999	6.51617	0.00406194	1.60071e-4	0.0413652	0.00386366
chr10	35466240	35466339	4476976	0	+	0.585859	(0.58,1]	chr10	428126	104	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	69	2	5.20223	5.502065	5.8019	0.007984	0.00411607	0.0596361	0.0374453
chr8	17968794	17968888	3764931	0	+	0.308511	(0.29,0.33]	chr8	361730	13	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5	protein_coding	protein_coding	protein_coding	protein_coding	1	153	2	4.68433	5.50168	6.31903	0.0052024	3.6657e-4	0.0475031	0.00701344
chr10	70071123	70071222	4503508	0	+	0.494949	(0.485,0.523]	chr10	430825	39	INTRON	INTRON	MACROH2A2	ENSG00000099284.15	ENST00000677255.1:ENST00000676683.1:ENST00000676699.1:ENST00000677659.1:ENST00000676609.1:ENST00000676923.1:ENST00000373255.9:ENST00000679349.1:ENST00000455786.1:ENST00000676608.1:ENST00000676692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	69	2	5.30837	5.50157	5.69477	0.0314138	0.00203227	0.12069	0.0232814
chr4	3179334	3179431	2003661	0	+	0.494845	(0.485,0.523]	chr4	204462	5	INTRON	INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000680291.1:ENST00000510626.5:ENST00000509043.1:ENST00000513326.5:ENST00000513639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	69	2	5.30837	5.50157	5.69477	0.0314138	0.00203227	0.12069	0.0232814
chr4	2825296	2825396	2000371	0	+	0.51	(0.485,0.523]	chr4	203973	1	SS5_PROX	SS5_PROX:INTRON	SH3BP2	ENSG00000087266.17	ENST00000503393.8:ENST00000504294.5:ENST00000508385.5:ENST00000511663.5:ENST00000512014.5:ENST00000435136.8:ENST00000511185.5:ENST00000511747.6:ENST00000356331.9:ENST00000515737.5:ENST00000515183.5:ENST00000505941.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	208	2	4.41236	5.501345	6.59033	0.00353829	2.01679e-4	0.0381878	0.00457038
chr11	33343264	33343362	4838356	0	+	0.5	(0.485,0.523]	chr11	462635	12	INTRON	INTRON	HIPK3	ENSG00000110422.12	ENST00000525975.5:ENST00000303296.9:ENST00000379016.7:ENST00000456517.2	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.48966	5.5012799999999995	5.5129	0.0229047	0.0033837199999999998	0.102982	0.0328791
chr7	39957116	39957216	3352397	0	+	0.5	(0.485,0.523]	chr7	324178	43	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.48966	5.5012799999999995	5.5129	0.0229047	0.0033837199999999998	0.102982	0.0328791
chr16	48635692	48635792	6446687	0	+	0.49	(0.485,0.523]	chr16	639380	117	INTRON	INTRON	ENSG00000260086	ENSG00000260086.4	ENST00000568150.4:ENST00000686696.1:ENST00000564212.1:ENST00000565072.1	lncRNA	lncRNA	lncRNA	lncRNA	0	86	2	4.60518	5.50121	6.39724	0.0233371	0.00505512	0.110098	0.0465263
chr17	15454283	15454383	6859977	0	-	0.57	(0.523,0.58]	chr17	695067	8	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	152	2	4.71267	5.50115	6.28963	0.00618741	3.11451e-4	0.0519442	0.00624487
chr17	643195	643294	6823608	0	-	0.444444	(0.419,0.45]	chr17	689804	100	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000680944.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000681830.1:ENST00000679959.1:ENST00000680114.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000570650.2:ENST00000679680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	71	2	5.27868	5.501094999999999	5.72351	0.0457732	0.00310292	0.142336	0.0311614
chr12	6339889	6339988	5362106	0	-	0.484848	(0.45,0.485]	chr12	525042	53	INTRON	INTRON	TNFRSF1A	ENSG00000067182.8	ENST00000534885.5:ENST00000162749.7:ENST00000543995.5:ENST00000540022.5:ENST00000539372.5:ENST00000366159.8:ENST00000543048.5:ENST00000440083.6:ENST00000536194.1:ENST00000535958.1:ENST00000538363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	161	2	4.01376	5.5010200000000005	6.98828	0.0024644	0.00198597	0.0279914	0.0265925
chr16	89221652	89221736	6523478	0	+	0.452381	(0.45,0.485]	chr16	647075	1	SS3_PROX	SS3_PROX:INTRON	ZNF778	ENSG00000170100.14	ENST00000433976.7:ENST00000620195.4:ENST00000564906.5:ENST00000567651.5:ENST00000306502.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	75	2	4.83755	5.500975	6.1644	0.06646	6.92954e-4	0.162385	0.0109657
chr15	31335354	31335453	6072935	0	+	0.545455	(0.523,0.58]	chr15	596672	72	INTRON	INTRON	KLF13	ENSG00000169926.11	ENST00000307145.4:ENST00000558921.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	77	2	4.90222	5.500915	6.09961	0.0125132	0.00866655	0.0765738	0.0623824
chr17	72465432	72465531	6962949	0	-	0.424242	(0.419,0.45]	chr17	710330	27	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000648907.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000650483.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000647593.1:ENST00000649311.1:ENST00000457958.7:ENST00000649881.1:ENST00000649647.1:ENST00000648401.1:ENST00000649733.1:ENST00000648520.1:ENST00000649250.1:ENST00000648069.1:ENST00000647953.1:ENST00000650051.1:ENST00000648176.2:ENST00000648403.1:ENST00000649269.1:ENST00000577828.6:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1:ENST00000650510.1:ENST00000649013.1:ENST00000647850.1:ENST00000648500.1:ENST00000580175.2:ENST00000650121.1:ENST00000650499.1:ENST00000584749.2:ENST00000650033.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	169	2	4.88193	5.500915	6.1199	0.0132894	3.11292e-4	0.0787251	0.00624487
chrX	50077555	50077653	7881391	0	+	0.459184	(0.45,0.485]	chrX	826450	12	INTRON	INTRON	CLCN5	ENSG00000171365.17	ENST00000376091.8:ENST00000376088.7:ENST00000643129.1:ENST00000376108.7:ENST00000642885.1:ENST00000307367.2:ENST00000646398.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	73	2	5.12938	5.5009049999999995	5.87243	0.0143887	0.00873194	0.0821732	0.0612699
chr19	8240185	8240285	7200283	0	+	0.57	(0.523,0.58]	chr19	734187	3	SS3_PROX	SS3_PROX:INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559490.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	273	2	4.20568	5.500745	6.79581	0.00272595	8.98003e-5	0.0331786	0.00252158
chr2	53982674	53982774	795027	0	+	0.44	(0.419,0.45]	chr2	90708	74	INTRON	INTRON	ACYP2	ENSG00000170634.13	ENST00000458030.3:ENST00000422521.2:ENST00000607452.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	71	2	5.44407	5.50073	5.55739	0.0310506	0.00585948	0.119758	0.0474117
chr6	169649375	169649475	3304357	0	-	0.57	(0.523,0.58]	chr6	319868	1	SS3_PROX	SS3_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	201	2	4.05953	5.5002949999999995	6.94106	0.00183008	5.60158e-4	0.0266451	0.00945776
chr1	248854428	248854523	709837	0	-	0.389474	(0.36,0.39]	chr1	83011	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ZNF692	ENSG00000171163.16	ENST00000463519.5:ENST00000306601.9:ENST00000366471.7:ENST00000533927.5:ENST00000476503.5:ENST00000477070.6:ENST00000412341.6:ENST00000482023.5:ENST00000451251.5:ENST00000470787.6:ENST00000462037.6:ENST00000474351.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	71	2	5.19713	5.50023	5.80333	0.0462258	0.00231859	0.143138	0.0255753
chr13	113012964	113013064	5655753	0	+	0.65	(0.58,1]	chr13	555138	106	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	150	2	3.9863	5.50019	7.01408	0.0017591	6.3791e-4	0.0211077	0.0148365
chr9	134340233	134340332	4260825	0	+	0.565657	(0.523,0.58]	chr9	406311	132	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	186	2	4.31548	5.49993	6.68438	0.005162	1.2535e-4	0.0472296	0.00324328
chr8	108206578	108206677	4038764	0	-	0.555556	(0.523,0.58]	chr8	385490	27	INTRON	INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000677524.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000677317.1:ENST00000676530.1:ENST00000677696.1:ENST00000519517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	150	2	4.4841	5.4999199999999995	6.51574	0.00409625	6.06023e-4	0.0413652	0.0100269
chr7	152403645	152403745	3737167	0	-	0.42	(0.419,0.45]	chr7	359244	446	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	161	2	4.30181	5.49987	6.69793	0.00514373	0.00146956	0.0471181	0.0185589
chr13	112974037	112974137	5655361	0	+	0.58	(0.523,0.58]	chr13	555120	42	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	4.68785	5.4997799999999994	6.31171	0.0194172	0.00594629	0.0994526	0.0506158
chrX	154550187	154550287	7962343	0	+	0.43	(0.419,0.45]	chrX	833729	17	INTRON	INTRON	IKBKG	ENSG00000269335.7	ENST00000440286.6:ENST00000422680.6:ENST00000618670.4:ENST00000612051.1:ENST00000445622.6:ENST00000686378.1:ENST00000413620.6:ENST00000689906.1:ENST00000693029.1:ENST00000687445.1:ENST00000686774.1:ENST00000692816.1:ENST00000594239.6:ENST00000692948.1:ENST00000615874.4:ENST00000619941.4:ENST00000617207.4:ENST00000611176.4:ENST00000615186.5:ENST00000611071.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	219	2	4.23702	5.499595	6.76217	0.00460997	5.25039e-4	0.0442426	0.00903907
chr14	31163199	31163299	5952688	0	-	0.41	(0.39,0.419]	chr14	583296	55	INTRON	INTRON	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000691390.1:ENST00000553957.6:ENST00000687002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	161	2	4.16761	5.499585	6.83156	0.00348989	0.00194652	0.0379065	0.0225704
chr10	18556568	18556668	4642294	0	-	0.45	(0.419,0.45]	chr10	443321	42	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	4.98054	5.49944	6.01834	0.015582500000000001	0.0154548	0.0869771	0.0849828
chr19	436883	436983	7303556	0	-	0.57	(0.523,0.58]	chr19	752508	2	SS3_PROX	SS3_PROX:INTRON	SHC2	ENSG00000129946.11	ENST00000264554.11:ENST00000590222.5:ENST00000590113.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	73	2	5.08882	5.499395	5.90997	0.012016	0.00834774	0.0743424	0.0598672
chr19	3528114	3528214	7191579	0	+	0.58	(0.523,0.58]	chr19	732248	3	SS5_PROX	SS5_PROX:INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	73	2	5.08882	5.499395	5.90997	0.012016	0.00834774	0.0743424	0.0598672
chr21	43416249	43416348	7676229	0	-	0.414141	(0.39,0.419]	chr21	802488	19	UTR3	UTR3:EXON_MRNA	SIK1	ENSG00000142178.9	ENST00000270162.8	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.36155	5.4986999999999995	5.63585	0.025023	0.00648185	0.10758	0.0503748
chr19	21405028	21405128	7231652	0	+	0.33	(0.29,0.33]	chr19	740326	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZNF493	ENSG00000196268.12	ENST00000596302.5:ENST00000392288.7:ENST00000355504.4:ENST00000594390.5:ENST00000596815.1:ENST00000339914.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	73	2	5.07997	5.498615	5.91726	0.010702	0.00913217	0.0701493	0.0632458
chr1	204225383	204225483	645036	0	-	0.38	(0.36,0.39]	chr1	76439	14	INTRON	INTRON	PLEKHA6	ENSG00000143850.16	ENST00000272203.8:ENST00000637508.1:ENST00000414478.1	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	4.56076	5.49861	6.43646	0.103289	4.61522e-4	0.197541	0.00824056
chr13	26258468	26258568	5551231	0	+	0.42	(0.419,0.45]	chr13	547916	33	INTRON	INTRON	CDK8	ENSG00000132964.12	ENST00000536792.5:ENST00000381527.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	161	2	4.54948	5.49848	6.44748	0.00782663	7.67962e-4	0.0592048	0.0118316
chr17	4852718	4852818	6672080	0	+	0.58	(0.523,0.58]	chr17	668609	187	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	70	2	5.30515	5.49836	5.69157	0.0172851	0.00509102	0.0897247	0.0433513
chr21	35942160	35942260	7666385	0	-	0.56	(0.523,0.58]	chr21	801118	773	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000475045.6	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.02927	5.498005	5.96674	0.0109075	0.0095202	0.0707085	0.0650078
chr13	48406036	48406136	5587468	0	+	0.34	(0.33,0.36]	chr13	551019	242	INTRON	INTRON	RB1	ENSG00000139687.16	ENST00000650461.1:ENST00000267163.6:ENST00000643064.1	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.25292	5.497999999999999	5.74308	0.0384256	0.00238447	0.131324	0.0260514
chr2	127740352	127740452	1267009	0	-	0.54	(0.523,0.58]	chr2	136574	19	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5	protein_coding	protein_coding	protein_coding	protein_coding	3	530	2	5.30444	5.497925	5.69141	3.28307e-4	1.14714e-5	0.0103129	5.66305e-4
chr11	96027111	96027211	5110406	0	-	0.37	(0.36,0.39]	chr11	496560	350	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6:ENST00000618849.1	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	5.10608	5.49785	5.88962	0.0166261	0.0111429	0.0884836	0.071709
chr7	47473409	47473509	3588542	0	-	0.49	(0.485,0.523]	chr7	346123	203	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.44489	5.4977149999999995	5.55054	0.0215787	0.00377098	0.100612	0.0353672
chr13	33214499	33214599	5684742	0	-	0.49	(0.485,0.523]	chr13	558196	86	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	184	2	3.80037	5.49768	7.19499	0.0131927	2.80995e-5	0.0785449	0.00107401
chr12	53413008	53413106	5236094	0	+	0.367347	(0.36,0.39]	chr12	508911	19	UTR3	UTR3:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	3	588	2	4.81549	5.497255	6.17902	0.0011365	6.04582e-6	0.020361	3.59678e-4
chr13	50641493	50641592	5599042	0	+	0.313131	(0.29,0.33]	chr13	551695	100	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	74	2	5.02042	5.49723	5.97404	0.0103902	0.0096909	0.0682598	0.0661757
chrX	24801892	24801991	7856981	0	+	0.50505	(0.485,0.523]	chrX	824101	70	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	188	2	4.39246	5.49693	6.6014	0.00443917	1.68998e-4	0.0433122	0.0040111
chr1	15052509	15052608	44937	0	+	0.40404	(0.39,0.419]	chr1	4408	80	INTRON	INTRON	KAZN	ENSG00000189337.17	ENST00000636203.1:ENST00000376030.7:ENST00000491547.1:ENST00000503743.5:ENST00000361144.9:ENST00000400798.6:ENST00000376028.8:ENST00000400797.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	74	2	5.10551	5.496885	5.88826	0.0169925	0.0112089	0.0889149	0.071709
chr10	87221355	87221455	4723356	0	-	0.42	(0.419,0.45]	chr10	450862	76	INTRON	INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6	lncRNA	lncRNA	lncRNA	lncRNA	0	71	2	5.23407	5.496715	5.75936	0.0486006	0.00285253	0.145074	0.0294017
chr2	148653044	148653143	918447	0	+	0.434343	(0.419,0.45]	chr2	102687	71	INTRON	INTRON	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000409654.5:ENST00000397424.2	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.23407	5.496715	5.75936	0.0486006	0.00285253	0.145074	0.0294017
chr16	83864941	83865041	6512566	0	+	0.4	(0.39,0.419]	chr16	646116	346	INTRON	INTRON	ENSG00000288849	ENSG00000288849.1	ENST00000689373.1:ENST00000692462.1	lncRNA	retained_intron	lncRNA	retained_intron	0	75	2	5.04836	5.49669	5.94502	0.0155393	0.0126072	0.0849828	0.0768036
chr8	80726779	80726879	4007749	0	-	0.37	(0.36,0.39]	chr8	382958	321	INTRON	INTRON	ZNF704	ENSG00000164684.13	ENST00000327835.7:ENST00000520336.1:ENST00000519936.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	70	2	5.4139	5.49669	5.57948	0.0340874	0.00393844	0.125059	0.0367306
chr7	2274513	2274611	3532918	0	-	0.653061	(0.58,1]	chr7	341189	22	INTRON	INTRON	SNX8	ENSG00000106266.11	ENST00000222990.8:ENST00000435060.5:ENST00000457286.5:ENST00000435336.5	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	4.62403	5.496565	6.3691	0.0578275	1.49225e-4	0.154343	0.00367368
chr13	28139087	28139187	5555507	0	+	0.78	(0.58,1]	chr13	548206	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	67	2	5.36153	5.496354999999999	5.63118	0.0109983	0.00273899	0.0708586	0.028553
chr18	13590536	13590636	7026498	0	+	0.43	(0.419,0.45]	chr18	717646	47	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000677744.1:ENST00000593236.1:ENST00000678400.1:ENST00000586207.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	71	2	5.39934	5.496245	5.59315	0.029494	0.00646489	0.116079	0.0503748
chr9	126871201	126871300	4242884	0	+	0.434343	(0.419,0.45]	chr9	402740	71	INTRON	INTRON	ZBTB34	ENSG00000177125.6	ENST00000319119.5:ENST00000695642.1	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.39934	5.496245	5.59315	0.029494	0.00646489	0.116079	0.0503748
chr6	170397473	170397573	3076554	0	+	0.58	(0.523,0.58]	chr6	299192	15	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	4.78384	5.4961199999999995	6.2084	0.0663135	4.95211e-4	0.162385	0.00865935
chr7	122328080	122328180	3695976	0	-	0.41	(0.39,0.419]	chr7	355336	21	INTRON	INTRON	CADPS2	ENSG00000081803.17	ENST00000449022.7:ENST00000313070.11:ENST00000462699.5:ENST00000412584.6:ENST00000397721.4	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	4.99538	5.49594	5.9965	0.0613573	0.00145172	0.158506	0.0184691
chr2	215433023	215433123	1368646	0	-	0.41	(0.39,0.419]	chr2	145799	3	SS5_PROX	SS5_PROX:INTRON	FN1	ENSG00000115414.21	ENST00000421182.5:ENST00000323926.10:ENST00000336916.8:ENST00000357867.8:ENST00000359671.5:ENST00000443816.5:ENST00000446046.5:ENST00000354785.11:ENST00000432072.6:ENST00000356005.8:ENST00000426059.1	protein_coding	protein_coding	protein_coding	protein_coding	4	701	2	4.95757	5.495505	6.03344	2.60309e-4	2.98158e-5	0.00912904	0.00112099
chr1	43423516	43423616	106290	0	+	0.58	(0.523,0.58]	chr1	12949	2	SS5_PROX	SS5_PROX:INTRON	SZT2	ENSG00000198198.17	ENST00000562955.2:ENST00000634258.3:ENST00000470139.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	71	2	5.20104	5.49514	5.78924	0.0147166	0.00648051	0.0826843	0.0503748
chr19	36575000	36575100	7248412	0	+	0.41	(0.39,0.419]	chr19	743010	1	SS5_PROX	SS5_PROX:INTRON	ZNF529-AS1	ENSG00000233527.10	ENST00000475219.6:ENST00000670019.1:ENST00000687100.1:ENST00000448373.6:ENST00000592880.6:ENST00000670806.1	lncRNA	lncRNA	lncRNA	lncRNA	1	159	2	4.59477	5.495139999999999	6.39551	0.00743138	6.29597e-4	0.057548	0.0102619
chr7	74500100	74500200	3391828	0	+	0.55	(0.523,0.58]	chr7	327343	456	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.21727	5.49507	5.77287	0.0361597	0.00160162	0.127853	0.0197827
chr2	202448915	202449015	994941	0	+	0.36	(0.33,0.36]	chr2	109280	710	INTRON	INTRON	BMPR2	ENSG00000204217.16	ENST00000374580.10:ENST00000374574.2	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.27557	5.49498	5.71439	0.0191308	0.00707628	0.0952349	0.0540197
chr21	15002467	15002567	7640385	0	-	0.44	(0.419,0.45]	chr21	799111	2	INTRON	INTRON	ENSG00000235609:NRIP1	ENSG00000235609.7:ENSG00000180530.11	ENST00000432230.6:ENST00000400202.5:ENST00000318948.7:ENST00000400199.5:ENST00000638122.1:ENST00000637963.1:ENST00000637630.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	1	162	2	4.1811	5.49482	6.80854	0.00425752	0.00199987	0.0422596	0.0230381
chr4	3369080	3369179	2005127	0	+	0.666667	(0.58,1]	chr4	204663	257	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	168	2	3.8171	5.49482	7.17254	0.0090206	1.05286e-5	0.0637469	5.33404e-4
chr1	6030725	6030824	6743	0	+	0.373737	(0.36,0.39]	chr1	1420	29	INTRON	INTRON	KCNAB2	ENSG00000069424.16	ENST00000655548.1:ENST00000378111.6:ENST00000378097.6:ENST00000666163.1:ENST00000671676.1:ENST00000658883.1:ENST00000658691.1:ENST00000435937.6:ENST00000445501.6:ENST00000478098.5:ENST00000653262.1:ENST00000668706.1:ENST00000389632.9:ENST00000654144.1:ENST00000341524.6:ENST00000462676.3:ENST00000428161.6:ENST00000352527.6:ENST00000663169.1:ENST00000653635.1:ENST00000661248.1:ENST00000656198.1:ENST00000602612.5:ENST00000481789.2:ENST00000656746.1:ENST00000665338.1:ENST00000666299.1:ENST00000652845.1:ENST00000655703.1:ENST00000669250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	70	2	5.33106	5.49454	5.65802	0.0383628	0.003279	0.131324	0.0322062
chr12	21942	22041	5355612	0	-	0.545455	(0.523,0.58]	chr12	524080	31	INTRON	INTRON	WASH8P	ENSG00000226210.3	ENST00000400706.3	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	69	2	5.40225	5.494525	5.5868	0.020474	0.00404292	0.0979776	0.0371291
chr17	17792233	17792332	6689959	0	+	0.535354	(0.523,0.58]	chr17	671348	97	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2:ENST00000395774.1	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.40225	5.494525	5.5868	0.020474	0.00404292	0.0979776	0.0371291
chr18	13262844	13262944	7023189	0	+	0.76	(0.58,1]	chr18	717514	435	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000590371.5:ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000590115.1:ENST00000677055.1:ENST00000399848.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	66	2	5.39546	5.49435	5.59324	0.0168207	0.0014734	0.0884836	0.0185589
chr12	120854234	120854334	5523826	0	-	0.39	(0.36,0.39]	chr12	544174	187	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.49224	5.49433	5.49642	0.0304242	0.00476539	0.11845	0.0414441
chr12	65961646	65961746	5256823	0	+	0.46	(0.45,0.485]	chr12	512328	29	INTRON	INTRON	HMGA2	ENSG00000149948.14	ENST00000403681.7:ENST00000539662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	70	2	5.16149	5.4941949999999995	5.8269	0.0427653	0.00167585	0.13762	0.0203806
chr1	100492832	100492931	197458	0	+	0.474747	(0.45,0.485]	chr1	21403	66	INTRON	INTRON	CDC14A	ENSG00000079335.20	ENST00000646665.1:ENST00000644844.1:ENST00000635056.2:ENST00000647005.1:ENST00000647203.1:ENST00000644676.1:ENST00000361544.11:ENST00000336454.5:ENST00000644813.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	69	2	5.38503	5.494005	5.60298	0.0308908	0.00292492	0.119556	0.029882
chr17	17829471	17829570	6865818	0	-	0.464646	(0.45,0.485]	chr17	695923	55	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.38503	5.494005	5.60298	0.0308908	0.00292492	0.119556	0.029882
chrX	131824735	131824832	8110048	0	-	0.484536	(0.45,0.485]	chrX	845353	11	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	FIRRE	ENSG00000213468.7	ENST00000649541.1:ENST00000663405.1:ENST00000665076.1:ENST00000654978.1:ENST00000427391.2:ENST00000668308.1:ENST00000658376.1:ENST00000650184.1:ENST00000653136.1:ENST00000657242.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	69	2	5.38503	5.494005	5.60298	0.0308908	0.00292492	0.119556	0.029882
chr16	4081870	4081970	6541449	0	-	0.63	(0.58,1]	chr16	650517	278	INTRON	INTRON	ADCY9	ENSG00000162104.10	ENST00000294016.8:ENST00000571467.1:ENST00000572288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	66	2	5.35214	5.493785000000001	5.63543	0.0181452	0.00131165	0.0921579	0.0171898
chr20	62853015	62853115	7584991	0	-	0.59	(0.58,1]	chr20	792812	65	INTRON	INTRON	TCFL5	ENSG00000101190.13	ENST00000335351.8:ENST00000217162.5	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.35214	5.493785000000001	5.63543	0.0181452	0.00131165	0.0921579	0.0171898
chr1	230070404	230070503	359450	0	+	0.50505	(0.485,0.523]	chr1	40623	26	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5:ENST00000488903.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	71	2	5.19749	5.49358	5.78967	0.0146211	0.00672953	0.0826064	0.0519464
chr2	72750062	72750161	1187447	0	-	0.40404	(0.39,0.419]	chr2	128770	82	INTRON	INTRON	EXOC6B	ENSG00000144036.16	ENST00000272427.11:ENST00000634650.1:ENST00000410104.1:ENST00000410112.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	70	2	5.32971	5.49358	5.65745	0.0390381	0.00330348	0.131575	0.0323993
chr19	2440323	2440423	7309589	0	-	0.47	(0.45,0.485]	chr19	753890	14	INTRON	INTRON	LMNB2	ENSG00000176619.13	ENST00000325327.4	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.33781	5.493515	5.64922	0.020599	0.0054758	0.0982852	0.0454065
chr2	46729633	46729733	786457	0	+	0.47	(0.45,0.485]	chr2	89915	298	INTRON	INTRON	SOCS5	ENSG00000171150.9	ENST00000306503.5:ENST00000394861.3	protein_coding	protein_coding	protein_coding	protein_coding	2	255	2	3.73856	5.493105	7.24765	0.0073534	3.05036e-5	0.057083	0.00114349
chr14	94585663	94585761	5902756	0	+	0.591837	(0.58,1]	chr14	576956	30	INTRON	INTRON	SERPINA5	ENSG00000188488.14	ENST00000553780.5:ENST00000554220.5:ENST00000556730.1:ENST00000554866.5:ENST00000556775.5:ENST00000329597.12:ENST00000553511.1:ENST00000554633.5:ENST00000555681.1:ENST00000554276.1:ENST00000557598.1:ENST00000556064.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	78	2	4.74346	5.492955	6.24245	0.0121457	0.00334087	0.0754623	0.0368376
chr16	29271513	29271613	6433552	0	+	0.54	(0.523,0.58]	chr16	636745	194	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	1	184	2	4.26341	5.4929500000000004	6.72249	0.00569356	1.11891e-4	0.0497715	0.00298349
chr16	83920862	83920961	6513133	0	+	0.474747	(0.45,0.485]	chr16	646141	55	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	69	2	5.34301	5.492905	5.6428	0.0328801	0.00265386	0.122593	0.027979
chr16	57377460	57377558	6466039	0	+	0.581633	(0.58,1]	chr16	641366	6	UTR5	UTR5:EXON_MRNA:INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1:ENST00000565912.1	protein_coding	protein_coding	protein_coding	protein_coding	2	185	2	4.21322	5.4929	6.77258	0.00108768	2.23183e-4	0.0198535	0.00490418
chr7	1023803	1023902	3526461	0	-	0.646465	(0.58,1]	chr7	340572	133	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	145	2	4.10248	5.49286	6.88324	0.0012583	8.53086e-4	0.0173632	0.0167083
chr12	133039347	133039447	5354341	0	+	0.38	(0.36,0.39]	chr12	523870	3	SS5_PROX	SS5_PROX:INTRON	ZNF84	ENSG00000198040.11	ENST00000392319.6:ENST00000543758.5:ENST00000438628.6:ENST00000540031.5:ENST00000539098.5:ENST00000539354.6:ENST00000539686.5:ENST00000536123.5:ENST00000327668.11:ENST00000543310.5:ENST00000545299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	72	2	5.04949	5.49241	5.93533	0.0563927	0.00167855	0.154188	0.0203806
chr5	172004785	172004883	2810287	0	-	0.387755	(0.36,0.39]	chr5	275199	11	INTRON	INTRON	FBXW11	ENSG00000072803.18	ENST00000296933.10:ENST00000517395.6:ENST00000265094.9:ENST00000393802.6:ENST00000523843.5:ENST00000519693.5:ENST00000520376.1:ENST00000522507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	72	2	5.04949	5.49241	5.93533	0.0563927	0.00167855	0.154188	0.0203806
chr7	6703274	6703372	3542746	0	-	0.428571	(0.419,0.45]	chr7	342318	25	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	2	445	2	5.33898	5.49236	5.64574	0.00115703	3.49978e-5	0.0205679	0.00126332
chr14	104892282	104892378	5926149	0	+	0.666667	(0.58,1]	chr14	579999	22	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.30747	5.491945	5.67642	0.0196049	0.00117039	0.0955413	0.0157899
chr20	49151281	49151381	7572629	0	-	0.4	(0.39,0.419]	chr20	791290	3	SS5_PROX	SS5_PROX:INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.31385	5.491885	5.66992	0.0237738	0.0071966	0.105296	0.0543014
chr6	144530451	144530551	3022360	0	+	0.37	(0.36,0.39]	chr6	295374	69	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.45303	5.49145	5.52987	0.0287883	0.00525731	0.115991	0.044445
chr21	43744054	43744138	7624050	0	+	0.583333	(0.58,1]	chr21	796747	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000498040.5:ENST00000472777.5:ENST00000481512.5:ENST00000490666.5:ENST00000467908.1:ENST00000343528.10:ENST00000398078.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	74	2	4.89007	5.491315	6.09256	0.00872525	0.00452436	0.0612699	0.0436138
chr7	1016525	1016624	3526388	0	-	0.646465	(0.58,1]	chr7	340572	60	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	74	2	4.89007	5.491315	6.09256	0.00872525	0.00452436	0.0612699	0.0436138
chr3	65539160	65539260	1810857	0	-	0.41	(0.39,0.419]	chr3	187255	64	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5:ENST00000476403.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	77	2	4.76257	5.491275	6.21998	0.0822354	8.22163e-4	0.179396	0.0124043
chr11	34214086	34214186	5023969	0	-	0.42	(0.419,0.45]	chr11	486048	90	INTRON	INTRON	ABTB2	ENSG00000166016.6	ENST00000435224.3:ENST00000530814.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	71	2	5.18804	5.491185	5.79433	0.051668	0.00262626	0.148503	0.0278348
chr21	41830424	41830523	7673626	0	-	0.424242	(0.419,0.45]	chr21	801978	17	INTRON	INTRON	PRDM15	ENSG00000141956.14	ENST00000422911.6:ENST00000441787.5:ENST00000449395.6:ENST00000398548.6:ENST00000447016.6:ENST00000269844.5:ENST00000491486.5:ENST00000489661.5:ENST00000496124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	71	2	5.18804	5.491185	5.79433	0.051668	0.00262626	0.148503	0.0278348
chr19	17146487	17146586	7218911	0	+	0.444444	(0.419,0.45]	chr19	737731	6	INTRON	INTRON	MYO9B	ENSG00000099331.14	ENST00000682292.1:ENST00000595618.5:ENST00000594824.5:ENST00000397274.6:ENST00000595641.5	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.35317	5.49061	5.62805	0.0280406	0.00714797	0.113651	0.0541241
chr20	271467	271567	7511401	0	-	0.44	(0.419,0.45]	chr20	783925	2	SS3_PROX	SS3_PROX:INTRON	C20orf96	ENSG00000196476.12	ENST00000400269.4:ENST00000360321.7:ENST00000382369.9	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.35317	5.49061	5.62805	0.0280406	0.00714797	0.113651	0.0541241
chr7	44522442	44522542	3585218	0	-	0.42	(0.419,0.45]	chr7	345622	2	SS3_PROX	SS3_PROX:INTRON	NPC1L1	ENSG00000015520.15	ENST00000381160.8:ENST00000289547.8:ENST00000546276.5	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.35317	5.49061	5.62805	0.0280406	0.00714797	0.113651	0.0541241
chr8	38806343	38806443	3802626	0	+	0.42	(0.419,0.45]	chr8	365853	3	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5:ENST00000522544.5:ENST00000524354.5:ENST00000523239.5:ENST00000317827.9:ENST00000276520.12:ENST00000520973.5:ENST00000521528.6:ENST00000521935.5:ENST00000523834.1:ENST00000521154.1:ENST00000524193.1:ENST00000522955.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	71	2	5.35317	5.49061	5.62805	0.0280406	0.00714797	0.113651	0.0541241
chr8	144209019	144209118	3928835	0	+	0.494949	(0.485,0.523]	chr8	375332	80	INTRON	INTRON	MROH1	ENSG00000179832.18	ENST00000326134.10:ENST00000532255.5:ENST00000423230.6:ENST00000534366.5:ENST00000527552.5:ENST00000528919.5:ENST00000527071.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	80	2	4.75939	5.490545	6.2217	0.0172254	0.00693912	0.0923809	0.0553898
chr11	107544766	107544866	5117534	0	-	0.41	(0.39,0.419]	chr11	496929	120	INTRON	INTRON	ALKBH8	ENSG00000137760.15	ENST00000428149.7:ENST00000429370.5:ENST00000389568.7:ENST00000260318.6:ENST00000417449.6:ENST00000393100.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	72	2	5.21344	5.490505000000001	5.76757	0.0204917	0.00893514	0.0979776	0.0620271
chr10	28559034	28559134	4469675	0	+	0.41	(0.39,0.419]	chr10	427649	206	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	292	2	3.43853	5.49034	7.54215	0.00159324	9.5067e-4	0.0197373	0.0184489
chr16	85233265	85233365	6515401	0	+	0.49	(0.485,0.523]	chr16	646377	55	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	78	2	4.83072	5.49033	6.14994	0.0148956	0.00788098	0.0847741	0.059464500000000003
chr18	11145926	11146026	7119897	0	-	0.53	(0.523,0.58]	chr18	724490	794	INTRON	INTRON	PIEZO2	ENSG00000154864.14	ENST00000302079.10:ENST00000674853.1:ENST00000383408.7:ENST00000503781.7:ENST00000580640.5:ENST00000582913.5:ENST00000686869.1:ENST00000688929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	205	2	3.27435	5.490254999999999	7.70616	0.0321785	5.14768e-6	0.121593	3.22346e-4
chr8	629437	629537	3932014	0	-	0.58	(0.523,0.58]	chr8	376005	18	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	149	2	4.50303	5.4901	6.47717	0.00439843	5.73963e-4	0.0429852	0.00962697
chr6	47268978	47269078	3144096	0	-	0.47	(0.45,0.485]	chr6	306750	151	INTRON	INTRON	TNFRSF21	ENSG00000146072.6	ENST00000296861.2	protein_coding	protein_coding	protein_coding	protein_coding	1	184	2	5.36486	5.489585	5.61431	0.0217589	5.20704e-5	0.100615	0.00169273
chr9	123405786	123405886	4396618	0	-	0.55	(0.523,0.58]	chr9	419589	19	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	70	2	5.25403	5.48945	5.72487	0.0163679	0.00573579	0.0875379	0.0467736
chr7	34725177	34725276	3572880	0	-	0.30303	(0.29,0.33]	chr7	344532	14	INTRON	INTRON	NPSR1-AS1	ENSG00000197085.11	ENST00000419766.5:ENST00000539747.5:ENST00000439852.5:ENST00000358772.8:ENST00000431669.5:ENST00000428922.5:ENST00000436945.4	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	150	2	4.45578	5.489425	6.52307	0.0035502	7.04866e-4	0.0382839	0.0111395
chr7	140048202	140048301	3724196	0	-	0.606061	(0.58,1]	chr7	357570	8	INTRON	INTRON	PARP12	ENSG00000059378.13	ENST00000263549.8:ENST00000473341.5:ENST00000488726.5:ENST00000489809.5:ENST00000491598.5:ENST00000493262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	69	2	5.14497	5.48936	5.83375	0.00751249	0.00474658	0.0576451	0.0413976
chr19	36488812	36488912	7369762	0	-	0.46	(0.45,0.485]	chr19	764031	118	INTRON	INTRON	ZNF566	ENSG00000186017.16	ENST00000493391.6:ENST00000392170.7:ENST00000452939.7:ENST00000427002.2:ENST00000424129.7:ENST00000434377.6:ENST00000472909.6:ENST00000460937.5:ENST00000480361.1:ENST00000494354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	157	2	4.81308	5.489295	6.16551	0.00879664	2.71322e-4	0.0630845	0.00564793
chr22	19899865	19899964	7765042	0	-	0.555556	(0.523,0.58]	chr22	813988	4	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	69	2	5.16969	5.48921	5.80873	0.0387762	0.00145893	0.131324	0.0184991
chr7	2378399	2378495	3308507	0	+	0.59375	(0.58,1]	chr7	320690	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000475415.5:ENST00000468611.5:ENST00000465670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	166	2	3.87867	5.488865	7.09906	0.00797934	1.35452e-5	0.0596361	6.38288e-4
chr15	59151000	59151099	6280370	0	-	0.585859	(0.58,1]	chr15	618921	123	INTRON	INTRON	MYO1E	ENSG00000157483.9	ENST00000288235.9:ENST00000559412.1	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.02314	5.48884	5.95454	0.00638322	0.0059453	0.0506158	0.0501889
chr16	85425421	85425521	6517325	0	+	0.6	(0.58,1]	chr16	646391	661	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.02314	5.48884	5.95454	0.00638322	0.0059453	0.0506158	0.0501889
chr6	3145164	3145263	2828590	0	+	0.666667	(0.58,1]	chr6	277604	43	INTRON	INTRON	BPHL	ENSG00000137274.13	ENST00000434640.5:ENST00000430655.6:ENST00000424847.6:ENST00000433912.5:ENST00000380379.10:ENST00000490918.5:ENST00000380375.4:ENST00000488487.2:ENST00000423798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	71	2	5.02314	5.48884	5.95454	0.00638322	0.0059453	0.0506158	0.0501889
chr9	134364185	134364285	4261065	0	+	0.64	(0.58,1]	chr9	406311	372	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	71	2	5.02314	5.48884	5.95454	0.00638322	0.0059453	0.0506158	0.0501889
chr8	143516685	143516785	4096760	0	-	0.69	(0.58,1]	chr8	389278	84	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.31036	5.48867	5.66698	0.0102927	0.00312721	0.0684871	0.0311915
chr7	34724980	34725078	3572878	0	-	0.397959	(0.39,0.419]	chr7	344532	12	INTRON	INTRON	NPSR1-AS1	ENSG00000197085.11	ENST00000419766.5:ENST00000539747.5:ENST00000439852.5:ENST00000358772.8:ENST00000431669.5:ENST00000428922.5:ENST00000436945.4	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	161	2	4.10127	5.48865	6.87603	0.00322454	0.00230482	0.0362983	0.0254829
chr10	31391094	31391194	4472473	0	+	0.42	(0.419,0.45]	chr10	427907	10	INTRON	INTRON	ZEB1	ENSG00000148516.23	ENST00000488625.6:ENST00000560196.5:ENST00000542879.5:ENST00000561304.5:ENST00000320985.14:ENST00000560721.6:ENST00000559858.5:ENST00000558440.5:ENST00000437844.6:ENST00000424869.6:ENST00000542815.7:ENST00000558863.5:ENST00000561212.5:ENST00000558655.5:ENST00000561061.5:ENST00000559496.5:ENST00000446923.7:ENST00000557827.5:ENST00000606671.5:ENST00000606161.1:ENST00000493835.5:ENST00000560909.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	75	2	5.04004	5.488615	5.93719	0.0176643	0.0137308	0.0909046	0.0814223
chr17	63765411	63765498	6944765	0	-	0.586207	(0.58,1]	chr17	708302	1	SS5_PROX	SS5_PROX:INTRON	CCDC47	ENSG00000108588.15	ENST00000225726.10:ENST00000403162.7:ENST00000582252.1	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.45872	5.4884249999999994	5.51813	0.013519	0.00211999	0.0792526	0.0239744
chr3	13374553	13374643	1692594	0	-	0.633333	(0.58,1]	chr3	176730	3	INTRON	INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000420141.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	66	2	5.45872	5.4884249999999994	5.51813	0.013519	0.00211999	0.0792526	0.0239744
chr16	72844452	72844552	6625847	0	-	0.54	(0.523,0.58]	chr16	663523	142	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2:ENST00000397992.5:ENST00000268489.10:ENST00000563625.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	76	2	4.90222	5.48811	6.074	0.0125132	0.00906277	0.0765738	0.0637469
chr9	105276479	105276579	4205914	0	+	0.41	(0.39,0.419]	chr9	399474	312	INTRON	INTRON	SLC44A1	ENSG00000070214.16	ENST00000374724.1:ENST00000374723.5:ENST00000470972.5:ENST00000374720.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	178	2	3.68433	5.48799	7.29165	0.00637588	0.00151615	0.0501889	0.0240441
chr12	116916908	116917007	5336065	0	+	0.464646	(0.45,0.485]	chr12	520812	52	INTRON	INTRON	FBXW8	ENSG00000174989.13	ENST00000652555.1:ENST00000455858.2	protein_coding	protein_coding	protein_coding	protein_coding	1	152	2	4.46808	5.487735	6.50739	0.00482293	7.25143e-4	0.0453395	0.0113618
chr19	6229378	6229476	7321305	0	-	0.632653	(0.58,1]	chr19	756087	19	INTRON	INTRON	MLLT1	ENSG00000130382.9	ENST00000252674.9	protein_coding	protein_coding	protein_coding	protein_coding	1	138	2	4.55404	5.48741	6.42078	0.00230938	3.19972e-4	0.0302623	0.00635576
chr1	9357184	9357284	20228	0	+	0.48	(0.45,0.485]	chr1	2217	2	INTRON	INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11:ENST00000357898.3:ENST00000377399.2	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.2551	5.48719	5.71928	0.0373953	0.00219685	0.130656	0.0245167
chr19	55266386	55266486	7407581	0	-	0.48	(0.45,0.485]	chr19	771325	1	SS3_PROX	SS3_PROX:INTRON	HSPBP1	ENSG00000133265.11	ENST00000433386.7:ENST00000255631.9:ENST00000587922.5:ENST00000585927.1:ENST00000587959.1	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.2551	5.48719	5.71928	0.0373953	0.00219685	0.130656	0.0245167
chr22	45291798	45291896	7738867	0	+	0.5	(0.485,0.523]	chr22	811371	23	INTRON	INTRON	UPK3A	ENSG00000100373.10	ENST00000216211.9:ENST00000396082.2	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.35096	5.48698	5.623	0.0192139	0.0047171	0.095424900000000007	0.0413976
chr7	112184204	112184304	3692350	0	-	0.49	(0.485,0.523]	chr7	354969	1797	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	69	2	5.35096	5.48698	5.623	0.0192139	0.0047171	0.095424900000000007	0.0413976
chr1	23063321	23063420	60670	0	+	0.393939	(0.39,0.419]	chr1	6321	38	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	70	2	5.24182	5.486879999999999	5.73194	0.0441194	0.00276973	0.140174	0.0286873
chr1	31334386	31334485	79700	0	+	0.40404	(0.39,0.419]	chr1	9104	149	INTRON	INTRON	ZCCHC17	ENSG00000121766.16	ENST00000618216.4:ENST00000546109.5:ENST00000616393.4:ENST00000616859.4:ENST00000615916.4:ENST00000479629.5:ENST00000373714.5:ENST00000344147.10:ENST00000627541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	70	2	5.24182	5.486879999999999	5.73194	0.0441194	0.00276973	0.140174	0.0286873
chr17	77350199	77350299	6803861	0	+	0.66	(0.58,1]	chr17	686742	260	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	140	2	4.28568	5.486835	6.68799	0.00130716	7.30957e-4	0.0220198	0.0113963
chr8	503388	503488	3931438	0	-	0.6	(0.58,1]	chr8	375980	84	INTRON	INTRON	TDRP	ENSG00000180190.13	ENST00000523656.5:ENST00000324079.11	protein_coding	protein_coding	protein_coding	protein_coding	1	140	2	4.28568	5.486835	6.68799	0.00130716	7.30957e-4	0.0220198	0.0113963
chr5	180573001	180573098	2606403	0	+	0.463918	(0.45,0.485]	chr5	259158	12	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.43172	5.48679	5.54186	0.0243502	0.00440365	0.106588	0.0393688
chr11	28310808	28310908	4825434	0	+	0.45	(0.419,0.45]	chr11	461886	135	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	79	2	4.85365	5.486775	6.1199	0.0197641	0.0132894	0.100774	0.0787251
chr20	36315901	36316001	7469146	0	+	0.63	(0.58,1]	chr20	777805	90	INTRON	INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	4.76284	5.48676	6.21068	0.0471737	2.44053e-4	0.143232	0.00522003
chr14	31573932	31574032	5773596	0	+	0.34	(0.33,0.36]	chr14	566268	85	INTRON	INTRON	NUBPL	ENSG00000151413.17	ENST00000550649.5:ENST00000547839.5:ENST00000281081.12:ENST00000548937.5:ENST00000552489.5:ENST00000549838.5:ENST00000550355.1:ENST00000551314.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	70	2	5.15931	5.48661	5.81391	0.043896	0.00200357	0.139792	0.0230381
chr6	16749375	16749475	3104340	0	-	0.34	(0.33,0.36]	chr6	300897	91	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6:ENST00000495178.1:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1:ENST00000676138.1:ENST00000467008.5:ENST00000498374.1:ENST00000492857.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	69	2	5.38284	5.486435	5.59003	0.0317908	0.00344516	0.121384	0.0333853
chr3	48424948	48425032	1766682	0	-	0.607143	(0.58,1]	chr3	182277	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	142	2	4.18386	5.486385	6.7889099999999996	0.00104954	9.90719e-4	0.0194601	0.0141138
chr9	134369574	134369674	4261119	0	+	0.63	(0.58,1]	chr9	406311	426	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	145	2	4.0743	5.48634	6.89838	0.00136577	8.25028e-4	0.0176851	0.0170688
chr1	44031177	44031205	459367	0	-	0.571429	(0.523,0.58]	chr1	55276	1	SS5_PROX	SS5_PROX:INTRON	SLC6A9	ENSG00000196517.13	ENST00000372306.7:ENST00000372310.8:ENST00000475075.6:ENST00000492434.6:ENST00000489764.1:ENST00000466926.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	68	2	5.39327	5.486035	5.5788	0.0277354	0.00262418	0.112851	0.0278348
chr17	77304750	77304850	6803398	0	+	0.56	(0.523,0.58]	chr17	686716	95	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	68	2	5.39327	5.486035	5.5788	0.0277354	0.00262418	0.112851	0.0278348
chr21	43030493	43030592	7623319	0	+	0.555556	(0.523,0.58]	chr21	796571	5	UTR3	UTR3:EXON_MRNA	PKNOX1	ENSG00000160199.15	ENST00000432907.6:ENST00000291547.10	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.39327	5.486035	5.5788	0.0277354	0.00262418	0.112851	0.0278348
chr3	126528111	126528211	1556377	0	+	0.57	(0.523,0.58]	chr3	164844	33	INTRON	INTRON	CHST13	ENSG00000180767.11	ENST00000319340.7	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.39327	5.486035	5.5788	0.0277354	0.00262418	0.112851	0.0278348
chr17	2084828	2084927	6832795	0	-	0.464646	(0.45,0.485]	chr17	691062	25	INTRON	INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11:ENST00000573166.5:ENST00000354901.8:ENST00000536871.6:ENST00000575454.1:ENST00000575338.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	70	2	5.28846	5.48588	5.6833	0.0195193	0.00612862	0.0955413	0.0489549
chr1	9356885	9356985	20225	0	+	0.39	(0.36,0.39]	chr1	2216	3	SS5_PROX	SS5_PROX:INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11:ENST00000357898.3:ENST00000377399.2	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.1004	5.48562	5.87084	0.0526991	0.00196738	0.14912	0.022768300000000002
chr2	168057809	168057909	1307943	0	-	0.55	(0.523,0.58]	chr2	140195	404	INTRON	INTRON	STK39	ENSG00000198648.11	ENST00000487143.5:ENST00000355999.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	68	2	5.35124	5.4855	5.61976	0.0295772	0.00236826	0.116079	0.0259199
chr11	43706601	43706701	4846366	0	+	0.43	(0.419,0.45]	chr11	463519	249	INTRON	INTRON	ENSG00000283341:HSD17B12	ENSG00000283341.3:ENSG00000149084.13	ENST00000532864.6:ENST00000529261.5:ENST00000527433.6:ENST00000531185.5:ENST00000278353.10:ENST00000636007.1:ENST00000395700.4:ENST00000637401.1:ENST00000636722.1:ENST00000638034.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	4	307	2	3.10152	5.48539	7.86926	0.00408963	6.33602e-4	0.0374453	0.0147865
chr12	132953052	132953152	5542062	0	-	0.53	(0.523,0.58]	chr12	547064	44	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	68	2	5.43411	5.48538	5.53665	0.026041	0.00291382	0.109673	0.0298557
chr8	23294864	23294964	3773590	0	+	0.56	(0.523,0.58]	chr8	363414	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	R3HCC1	ENSG00000104679.12	ENST00000522012.6:ENST00000625275.3:ENST00000411463.2:ENST00000265806.12:ENST00000520480.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	68	2	5.43411	5.48538	5.53665	0.026041	0.00291382	0.109673	0.0298557
chr1	236008130	236008229	693169	0	-	0.333333	(0.33,0.36]	chr1	81538	139	INTRON	INTRON	NID1	ENSG00000116962.15	ENST00000366595.7:ENST00000264187.7	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.34082	5.485329999999999	5.62984	0.0338211	0.00313405	0.124319	0.0312116
chr10	46807204	46807304	4484755	0	+	0.51	(0.485,0.523]	chr10	428921	49	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000688259.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	200	2	4.13081	5.484780000000001	6.83875	0.00220993	4.67935e-4	0.0295736	0.00831353
chr6	3147737	3147836	2828616	0	+	0.535354	(0.523,0.58]	chr6	277604	69	INTRON	INTRON	BPHL	ENSG00000137274.13	ENST00000434640.5:ENST00000430655.6:ENST00000424847.6:ENST00000433912.5:ENST00000380379.10:ENST00000490918.5:ENST00000380375.4:ENST00000488487.2:ENST00000423798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	72	2	5.08882	5.48477	5.88072	0.0126258	0.00834774	0.0761905	0.0598672
chr13	77131523	77131622	5732502	0	-	0.30303	(0.29,0.33]	chr13	562026	19	INTRON	INTRON	MYCBP2	ENSG00000005810.20	ENST00000683823.1:ENST00000684354.1:ENST00000682321.1:ENST00000695079.1:ENST00000695078.1:ENST00000683697.1:ENST00000357337.11:ENST00000544440.7:ENST00000695080.1:ENST00000695081.1:ENST00000695086.1:ENST00000466564.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	68	2	5.35847	5.484645	5.61082	0.0269557	0.00264971	0.112113	0.027979
chr6	109827933	109828031	2981677	0	+	0.510204	(0.485,0.523]	chr6	292352	28	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	FIG4	ENSG00000112367.12	ENST00000675552.1:ENST00000675772.1:ENST00000675153.1:ENST00000458693.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	68	2	5.39369	5.48446	5.57523	0.0275819	0.00274261	0.112782	0.028553
chr8	502489	502589	3931429	0	-	0.53	(0.523,0.58]	chr8	375980	75	INTRON	INTRON	TDRP	ENSG00000180190.13	ENST00000523656.5:ENST00000324079.11	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.02927	5.483955	5.93864	0.0114442	0.0095202	0.0723462	0.0650078
chr8	6639993	6640092	3746973	0	+	0.515152	(0.485,0.523]	chr8	360242	7	INTRON	INTRON	MCPH1	ENSG00000147316.15	ENST00000693231.1:ENST00000688388.1:ENST00000344683.10:ENST00000690708.1:ENST00000689348.1:ENST00000689633.1:ENST00000687720.1:ENST00000688101.1:ENST00000689148.1:ENST00000687324.1:ENST00000521175.2:ENST00000519221.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	68	2	5.35167	5.48393	5.61619	0.0294163	0.00247695	0.116079	0.0266492
chr10	119360749	119360849	4594855	0	+	0.67	(0.58,1]	chr10	439173	338	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.41094	5.483874999999999	5.55681	0.0126042	0.00240622	0.0761905	0.0261006
chr5	1104500	1104599	2608896	0	-	0.606061	(0.58,1]	chr5	259667	99	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.41094	5.483874999999999	5.55681	0.0126042	0.00240622	0.0761905	0.0261006
chr9	133737064	133737162	4427954	0	-	0.642857	(0.58,1]	chr9	423136	25	INTRON	INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000427237.6:ENST00000298628.6	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.41094	5.483874999999999	5.55681	0.0126042	0.00240622	0.0761905	0.0261006
chr11	17888631	17888731	5014123	0	-	0.51	(0.485,0.523]	chr11	484610	100	INTRON	INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528369.5:ENST00000528200.5:ENST00000529440.5:ENST00000529151.5:ENST00000532546.5:ENST00000525920.5:ENST00000532265.5:ENST00000533241.1:ENST00000525168.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	68	2	5.43453	5.483805	5.53308	0.0258944	0.00304306	0.109555	0.0306636
chr16	16297027	16297125	6408678	0	+	0.5	(0.485,0.523]	chr16	633423	19	INTRON	INTRON	NOMO3	ENSG00000103226.19	ENST00000676846.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	68	2	5.43453	5.483805	5.53308	0.0258944	0.00304306	0.109555	0.0306636
chr20	62125369	62125458	7505668	0	+	0.550562	(0.523,0.58]	chr20	782463	2	INTRON	INTRON	LSM14B	ENSG00000149657.20	ENST00000370915.5:ENST00000279068.11:ENST00000400318.6:ENST00000279069.11:ENST00000361670.3	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.30795	5.48377	5.65959	0.0315825	0.0021416	0.120781	0.0240825
chr12	421319	421419	5148398	0	+	0.48	(0.45,0.485]	chr12	500517	23	INTRON	INTRON	CCDC77	ENSG00000120647.10	ENST00000540180.5:ENST00000422000.5:ENST00000543504.5:ENST00000540344.5:ENST00000412006.6:ENST00000239830.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	71	2	5.00859	5.483765	5.95894	0.052901	0.00119342	0.14912	0.016037
chr6	43181120	43181216	2918599	0	+	0.458333	(0.45,0.485]	chr6	286865	21	UTR3	UTR3:EXON_MRNA	SRF	ENSG00000112658.8	ENST00000265354.6	protein_coding	protein_coding	protein_coding	protein_coding	1	184	2	3.94271	5.483695	7.02468	0.0110873	5.97847e-5	0.0712729	0.00186524
chr3	155526502	155526602	1945962	0	-	0.57	(0.523,0.58]	chr3	197904	21	INTRON	INTRON	PLCH1	ENSG00000114805.18	ENST00000494598.5:ENST00000460012.7:ENST00000334686.6:ENST00000447496.6:ENST00000340059.11	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.47382	5.48352	5.49322	0.0244797	0.00324246	0.106683	0.0319521
chr16	16039186	16039285	6406901	0	+	0.363636	(0.36,0.39]	chr16	633041	22	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	73	2	5.10608	5.483230000000001	5.86038	0.0174081	0.0111429	0.0901374	0.071709
chr8	128039280	128039380	3920273	0	+	0.44	(0.419,0.45]	chr8	374316	3	SS5_PROX	SS5_PROX:INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1	lncRNA	lncRNA	lncRNA	lncRNA	0	77	2	4.7549	5.483205	6.21151	0.0888907	9.41863e-4	0.183874	0.0135546
chr16	72493264	72493364	6623491	0	-	0.36	(0.33,0.36]	chr16	663434	9	INTRON	INTRON	LINC01572	ENSG00000261008.8	ENST00000624829.4:ENST00000561611.2:ENST00000656218.1:ENST00000666555.2:ENST00000664155.1:ENST00000657725.1:ENST00000563770.5:ENST00000668081.1	lncRNA	lncRNA	lncRNA	lncRNA	0	69	2	5.29754	5.48306	5.66858	0.0360263	0.0028562	0.127853	0.0294256
chrX	48464158	48464254	8040329	0	-	0.489583	(0.485,0.523]	chrX	838611	8	INTRON	INTRON	SLC38A5	ENSG00000017483.16	ENST00000595796.5:ENST00000619100.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5:ENST00000416711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	71	2	4.96239	5.4829	6.00341	0.0518747	9.07333e-4	0.148503	0.0132726
chr17	242336	242436	6820693	0	-	0.42	(0.419,0.45]	chr17	689558	79	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000570893.5:ENST00000576001.5:ENST00000570954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	70	2	5.27868	5.48272	5.68676	0.0457732	0.00338051	0.142336	0.0328791
chr11	68421895	68421994	4883189	0	+	0.40404	(0.39,0.419]	chr11	470622	50	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	185	2	3.55811	5.482685	7.40726	0.00853617	0.00122356	0.0610387	0.021209
chr10	18553070	18553170	4642259	0	-	0.42	(0.419,0.45]	chr10	443321	7	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.44407	5.4824	5.52073	0.0327198	0.00585948	0.122543	0.0474117
chr16	4081970	4082070	6541450	0	-	0.45	(0.419,0.45]	chr16	650517	279	INTRON	INTRON	ADCY9	ENSG00000162104.10	ENST00000294016.8:ENST00000571467.1:ENST00000572288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	70	2	5.44407	5.4824	5.52073	0.0327198	0.00585948	0.122543	0.0474117
chr9	123103893	123103990	4235477	0	+	0.43299	(0.419,0.45]	chr9	402065	8	UTR3	UTR3:EXON_MRNA	RABGAP1	ENSG00000011454.18	ENST00000373647.9	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.44407	5.4824	5.52073	0.0327198	0.00585948	0.122543	0.0474117
chr18	6041643	6041743	7110127	0	-	0.43	(0.419,0.45]	chr18	723828	90	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000400105.6:ENST00000317931.12:ENST00000400104.7	protein_coding	protein_coding	protein_coding	protein_coding	0	85	2	4.63955	5.482385	6.32522	0.0293406	0.00956261	0.125102	0.0658012
chr21	41829727	41829827	7673619	0	-	0.41	(0.39,0.419]	chr21	801978	10	INTRON	INTRON	PRDM15	ENSG00000141956.14	ENST00000422911.6:ENST00000441787.5:ENST00000449395.6:ENST00000398548.6:ENST00000447016.6:ENST00000269844.5:ENST00000491486.5:ENST00000489661.5:ENST00000496124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	75	2	4.82439	5.48228	6.14017	0.0762206	0.00100955	0.174484	0.0142887
chr12	132532171	132532270	5352937	0	+	0.626263	(0.58,1]	chr12	523670	38	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	138	2	4.65262	5.482275	6.31193	0.00289626	2.34232e-4	0.03418	0.00506154
chr1	11808187	11808286	28545	0	+	0.343434	(0.33,0.36]	chr1	3422	6	INTRON	INTRON	CLCN6	ENSG00000011021.23	ENST00000312413.10:ENST00000346436.11:ENST00000376497.7:ENST00000400892.3:ENST00000376496.4:ENST00000376492.3:ENST00000376490.7:ENST00000376491.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	269	2	4.04615	5.48217	6.91819	0.00425257	1.02287e-4	0.0422596	0.00278018
chr20	32128815	32128915	7454362	0	+	0.51	(0.485,0.523]	chr20	775905	123	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000442842.5:ENST00000450829.5:ENST00000217315.9:ENST00000417389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	68	2	5.47425	5.481954999999999	5.48966	0.0243396	0.0033837199999999998	0.106588	0.0328791
chr6	34588180	34588280	3124187	0	-	0.5	(0.485,0.523]	chr6	304700	10	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.47425	5.481954999999999	5.48966	0.0243396	0.0033837199999999998	0.106588	0.0328791
chr17	36576556	36576656	6725344	0	+	0.2	[0,0.29]	chr17	675820	84	INTRON	INTRON	GGNBP2	ENSG00000278311.5	ENST00000613102.5:ENST00000617860.4:ENST00000618837.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	71	2	5.04518	5.4818750000000005	5.91857	0.00813784	0.00698542	0.0588114	0.0555241
chr16	23389586	23389680	6567871	0	-	0.510638	(0.485,0.523]	chr16	655261	1	INTRON	INTRON	COG7	ENSG00000168434.13	ENST00000307149.10:ENST00000566364.1:ENST00000561854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	71	2	5.14248	5.481645	5.82081	0.0138807	0.00761903	0.0804838	0.0561937
chr7	155713041	155713140	3519216	0	+	0.515152	(0.485,0.523]	chr7	339826	12	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3:ENST00000486747.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	71	2	5.14248	5.481645	5.82081	0.0138807	0.00761903	0.0804838	0.0561937
chr10	18562364	18562464	4642352	0	-	0.43	(0.419,0.45]	chr10	443321	100	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	4.91849	5.481450000000001	6.04441	0.0174488	0.0149622	0.0928044	0.0835955
chr22	48793999	48794099	7752210	0	+	0.45	(0.419,0.45]	chr22	812294	422	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000336769.9	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	4.91849	5.481450000000001	6.04441	0.0174488	0.0149622	0.0928044	0.0835955
chr2	171015645	171015744	1312715	0	-	0.40404	(0.39,0.419]	chr2	140568	3	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	165	2	4.88501	5.481435	6.07786	0.012565	2.82098e-4	0.0761905	0.00580035
chr3	160501503	160501603	1951403	0	-	0.5	(0.485,0.523]	chr3	198362	66	UTR3	UTR3:EXON_MRNA	KPNA4	ENSG00000186432.10	ENST00000334256.9:ENST00000676866.1:ENST00000676799.1:ENST00000678630.1:ENST00000676958.1:ENST00000678020.1:ENST00000678765.1:ENST00000678839.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	216	2	4.62882	5.481355000000001	6.33389	0.00567224	1.03803e-4	0.0496143	0.002815
chr11	70686205	70686305	5061141	0	-	0.57	(0.523,0.58]	chr11	492688	162	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	69	2	5.30515	5.48132	5.65749	0.0182707	0.00509102	0.0921579	0.0433513
chr15	73688973	73689073	6150521	0	+	0.56	(0.523,0.58]	chr15	604912	35	INTRON	INTRON	CD276	ENSG00000103855.18	ENST00000567189.5:ENST00000537340.6:ENST00000318424.9:ENST00000318443.10:ENST00000560786.6:ENST00000558689.5:ENST00000561213.5:ENST00000560928.5:ENST00000563584.5:ENST00000561416.5:ENST00000560995.5:ENST00000567582.5:ENST00000561260.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	69	2	5.30515	5.48132	5.65749	0.0182707	0.00509102	0.0921579	0.0433513
chr8	97850397	97850496	3876625	0	+	0.545455	(0.523,0.58]	chr8	371528	249	INTRON	INTRON	LAPTM4B	ENSG00000104341.17	ENST00000445593.6:ENST00000619747.1:ENST00000521545.7	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.30515	5.48132	5.65749	0.0182707	0.00509102	0.0921579	0.0433513
chr11	72773647	72773747	5070678	0	-	0.57	(0.523,0.58]	chr11	493498	139	INTRON	INTRON	ARAP1:STARD10	ENSG00000186635.15:ENSG00000214530.10	ENST00000359373.9:ENST00000334805.11:ENST00000543304.5:ENST00000538536.5:ENST00000538437.5:ENST00000545082.5:ENST00000537947.5:ENST00000542989.5:ENST00000546314.5:ENST00000535267.1:ENST00000539138.1:ENST00000535054.1:ENST00000536290.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	249	2	3.80503	5.481255	7.15748	0.00593237	2.96091e-5	0.0506158	0.00111477
chr20	35896077	35896176	7465907	0	+	0.40404	(0.39,0.419]	chr20	777431	84	INTRON	INTRON	PHF20	ENSG00000025293.17	ENST00000374012.8:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5:ENST00000495338.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	70	2	5.36155	5.48125	5.60095	0.0263614	0.00648185	0.110638	0.0503748
chr2	78078946	78079046	1208239	0	-	0.36	(0.33,0.36]	chr2	130071	1387	INTRON	INTRON	ENSG00000227088	ENSG00000227088.2	ENST00000667782.1	lncRNA	lncRNA	lncRNA	lncRNA	1	154	2	4.51528	5.481109999999999	6.44694	0.00558656	7.08947e-4	0.0493906	0.0111903
chr13	113051112	113051211	5656146	0	+	0.636364	(0.58,1]	chr13	555180	39	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	77	2	4.74346	5.48099	6.21852	0.0121457	0.00350812	0.0754623	0.0379357
chr15	22964606	22964706	6204158	0	-	0.57	(0.523,0.58]	chr15	610573	162	INTRON	INTRON	CYFIP1	ENSG00000273749.5	ENST00000617928.5:ENST00000610365.4:ENST00000613006.4:ENST00000611832.4:ENST00000619037.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	68	2	5.26332	5.48083	5.69834	0.0337698	0.00194036	0.124319	0.0225083
chr21	5106665	5106764	7635253	0	-	0.565657	(0.523,0.58]	chr21	798621	266	INTRON	INTRON	ENSG00000280071	ENSG00000280071.4	ENST00000624810.3:ENST00000625036.3	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.26332	5.48083	5.69834	0.0337698	0.00194036	0.124319	0.0225083
chr21	45108943	45109042	7629003	0	+	0.535354	(0.523,0.58]	chr21	797509	338	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	68	2	5.26332	5.48083	5.69834	0.0337698	0.00194036	0.124319	0.0225083
chr5	132768226	132768326	2761961	0	-	0.56	(0.523,0.58]	chr5	270676	23	INTRON	INTRON	SEPTIN8	ENSG00000164402.14	ENST00000378719.7:ENST00000378721.8:ENST00000296873.11:ENST00000448933.5:ENST00000620483.4:ENST00000378706.5:ENST00000378699.6:ENST00000378701.5:ENST00000458488.2:ENST00000453480.5:ENST00000414594.5:ENST00000371493.7:ENST00000481794.5:ENST00000492490.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	68	2	5.26332	5.48083	5.69834	0.0337698	0.00194036	0.124319	0.0225083
chr7	892918	892998	3307713	0	+	0.575	(0.523,0.58]	chr7	320474	1	INTRON	INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000407192.5:ENST00000464468.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	68	2	5.26332	5.48083	5.69834	0.0337698	0.00194036	0.124319	0.0225083
chr7	75934808	75934908	3396803	0	+	0.54	(0.523,0.58]	chr7	328054	115	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000449920.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	206	2	3.64795	5.48077	7.31359	0.00180827	8.79392e-4	0.0215456	0.0176886
chr19	15644351	15644451	7215397	0	+	0.58	(0.523,0.58]	chr19	737138	3	SS5_PROX	SS5_PROX:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	74	2	4.96714	5.480725	5.99431	0.0108948	0.0104033	0.0706366	0.0686837
chr10	18556168	18556268	4642290	0	-	0.38	(0.36,0.39]	chr10	443321	38	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	84	2	4.64834	5.4806799999999996	6.31302	0.0272056	0.00834137	0.119337	0.0613342
chr5	1326094	1326174	2609074	0	-	0.625	(0.58,1]	chr5	259716	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000506641.5:ENST00000507195.5:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	67	2	5.0607	5.480625	5.90055	0.029633	6.1741e-4	0.116079	0.0101143
chr14	102148565	102148665	5916276	0	+	0.38	(0.36,0.39]	chr14	578696	80	INTRON	INTRON	WDR20	ENSG00000140153.18	ENST00000557485.5:ENST00000335263.9:ENST00000424963.6:ENST00000322340.9:ENST00000556807.1:ENST00000555879.5:ENST00000561154.1:ENST00000342702.8:ENST00000558567.5:ENST00000299135.6:ENST00000454394.2:ENST00000556094.1:ENST00000556511.2:ENST00000557186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	72	2	5.16105	5.480555000000001	5.80006	0.0191255	0.00993384	0.0952349	0.0666221
chr16	12456446	12456546	6394439	0	+	0.51	(0.485,0.523]	chr16	631994	132	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.12092	5.48053	5.84014	0.0414411	0.00139792	0.136301	0.0179863
chr19	49932321	49932421	7284116	0	+	0.51	(0.485,0.523]	chr19	749210	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ATF5	ENSG00000169136.13	ENST00000595125.5:ENST00000423777.7:ENST00000597227.5:ENST00000596658.1	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.12092	5.48053	5.84014	0.0414411	0.00139792	0.136301	0.0179863
chr22	24985948	24986048	7698884	0	+	0.54	(0.523,0.58]	chr22	805865	328	INTRON	INTRON	KIAA1671	ENSG00000197077.14	ENST00000358431.8:ENST00000406486.8	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.44845	5.480460000000001	5.51247	0.0230387	0.00361636	0.102982	0.0342681
chr3	48425180	48425280	1766685	0	-	0.61	(0.58,1]	chr3	182279	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	138	2	4.38079	5.48013	6.57947	0.00165065	5.47609e-4	0.0250898	0.0093303
chr1	43562113	43562213	107060	0	+	0.52	(0.485,0.523]	chr1	13192	78	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	153	2	4.10606	5.47997	6.85388	0.00214661	0.00177809	0.0291055	0.0212512
chr10	127428700	127428800	4612235	0	+	0.55	(0.523,0.58]	chr10	440909	23	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2	protein_coding	protein_coding	protein_coding	protein_coding	1	158	2	4.99261	5.479675	5.96674	0.0109075	1.34343e-4	0.0707085	0.00339846
chr10	131959039	131959139	4616618	0	+	0.62	(0.58,1]	chr10	441116	32	UTR3	UTR3:EXON_MRNA	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	67	2	5.25731	5.47961	5.70191	0.00964351	0.00358178	0.0659937	0.0342681
chr12	132534560	132534660	5352961	0	+	0.59	(0.58,1]	chr12	523670	62	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	2	183	2	4.09127	5.479604999999999	6.86794	8.82366e-4	3.30588e-4	0.0176886	0.00649747
chr16	18520244	18520328	6559086	0	-	0.392857	(0.39,0.419]	chr16	653701	2	SS5_PROX	SS5_PROX:INTRON	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000381474.7:ENST00000564991.5:ENST00000621364.4:ENST00000622306.5:ENST00000543392.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	72	2	5.16048	5.47959	5.7987	0.0195328	0.00999413	0.0955413	0.0667545
chr6	32975212	32975283	2897723	0	+	0.380282	(0.36,0.39]	chr6	283733	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRD2	ENSG00000204256.14	ENST00000374825.9:ENST00000469132.2:ENST00000679179.1:ENST00000678778.1:ENST00000449085.4:ENST00000677331.1:ENST00000456339.5:ENST00000678250.1:ENST00000677085.1:ENST00000374831.8:ENST00000495733.5:ENST00000482914.5:ENST00000679099.1:ENST00000464592.6:ENST00000607833.5:ENST00000395287.5:ENST00000449025.5:ENST00000463639.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	197	2	4.37395	5.47926	6.58457	0.00586794	3.09569e-4	0.0506158	0.00622124
chr7	6825577	6825677	3543129	0	-	0.52	(0.485,0.523]	chr7	342420	1	SS5_PROX	SS5_PROX:INTRON	CCZ1B	ENSG00000146574.16	ENST00000316731.13:ENST00000626257.2:ENST00000411858.1:ENST00000496187.5:ENST00000464543.1:ENST00000486840.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	68	2	5.26375	5.47926	5.69477	0.0335928	0.00203227	0.124319	0.0232814
chr12	69557599	69557699	5261519	0	+	0.55	(0.523,0.58]	chr12	513042	4	SS3_PROX	SS3_PROX:INTRON	FRS2	ENSG00000166225.9	ENST00000547219.5:ENST00000550316.5:ENST00000547414.5:ENST00000548154.5:ENST00000549921.6:ENST00000550389.5:ENST00000550937.5:ENST00000549092.5:ENST00000550169.5	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.20104	5.479229999999999	5.75742	0.0155135	0.00648051	0.0849828	0.0503748
chr5	14404052	14404152	2386002	0	+	0.57	(0.523,0.58]	chr5	238651	26	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000512070.6:ENST00000513206.5:ENST00000515144.5:ENST00000509354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	70	2	5.20104	5.479229999999999	5.75742	0.0155135	0.00648051	0.0849828	0.0503748
chr19	35003924	35004024	7244899	0	+	0.5	(0.485,0.523]	chr19	742073	7	INTRON	INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	74	2	4.96361	5.479175	5.99474	0.0112713	0.0103305	0.071709	0.0684871
chr1	35715436	35715533	445619	0	-	0.43299	(0.419,0.45]	chr1	53053	17	UTR3	UTR3:EXON_MRNA	C1orf216	ENSG00000142686.8	ENST00000270815.5	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	4.62273	5.479075	6.33542	0.103601	6.85495e-4	0.197541	0.0108846
chr2	3297596	3297696	1081083	0	-	0.42	(0.419,0.45]	chr2	117633	149	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	70	2	5.23407	5.47879	5.72351	0.0486006	0.00310292	0.145074	0.0311614
chr11	70813767	70813866	5062421	0	-	0.636364	(0.58,1]	chr11	492713	62	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	5.16453	5.478680000000001	5.79283	0.0249802	8.4246e-4	0.10758	0.0125912
chr13	113520833	113520933	5658487	0	+	0.6	(0.58,1]	chr13	555715	1	SS5_PROX	SS5_PROX:INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	5.16453	5.478680000000001	5.79283	0.0249802	8.4246e-4	0.10758	0.0125912
chr17	7114016	7114116	6847774	0	-	0.57	(0.523,0.58]	chr17	693425	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	857	2	4.82814	5.4784749999999995	6.12881	4.96571e-4	7.28541e-7	0.0129439	8.49691e-5
chr8	38771091	38771191	3802266	0	+	0.48	(0.45,0.485]	chr8	365828	133	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	186	2	4.2327	5.4784500000000005	6.7242	0.0065939	1.44769e-4	0.0538851	0.00359413
chr12	30830621	30830721	5198882	0	+	0.43	(0.419,0.45]	chr12	505540	133	INTRON	INTRON	ENSG00000285517	ENSG00000285517.1	ENST00000648700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	70	2	5.39934	5.478365	5.55739	0.0310506	0.00646489	0.119758	0.0503748
chr17	8489740	8489839	6850270	0	-	0.353535	(0.33,0.36]	chr17	694275	16	INTRON	INTRON	MYH10	ENSG00000133026.14	ENST00000379980.8:ENST00000269243.8:ENST00000688902.1:ENST00000684843.1:ENST00000687178.1:ENST00000692526.1:ENST00000688497.1:ENST00000685418.1:ENST00000693441.1:ENST00000686654.1:ENST00000360416.8:ENST00000691566.1:ENST00000686521.1:ENST00000692077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	70	2	5.27557	5.47833	5.68109	0.0201622	0.00707628	0.0973366	0.0540197
chr13	98536696	98536796	5747888	0	-	0.61	(0.58,1]	chr13	563357	148	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	5.36153	5.478	5.59447	0.0117666	0.00273899	0.0737098	0.028553
chr9	134351810	134351909	4260941	0	+	0.676768	(0.58,1]	chr9	406311	248	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	66	2	5.36153	5.478	5.59447	0.0117666	0.00273899	0.0737098	0.028553
chr7	130911210	130911309	3711088	0	-	0.494949	(0.485,0.523]	chr7	356708	265	INTRON	INTRON	ENSG00000226380	ENSG00000226380.9	ENST00000432045.6:ENST00000447307.5:ENST00000418546.1	lncRNA	lncRNA	lncRNA	lncRNA	6	345	2	3.72053	5.477914999999999	7.2353	0.00101791	3.14886e-4	0.0191524	0.00629869
chrX	23740555	23740653	7995860	0	-	0.459184	(0.45,0.485]	chrX	836471	42	INTRON	INTRON	ACOT9	ENSG00000123130.17	ENST00000379303.10:ENST00000336430.11:ENST00000379295.5:ENST00000494361.5:ENST00000492081.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	70	2	5.06138	5.477905	5.89443	0.0492008	0.00141013	0.146142	0.0180659
chr11	70767465	70767565	5061956	0	-	0.49	(0.485,0.523]	chr11	492701	496	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	70	2	5.19749	5.477665	5.75784	0.0154142	0.00672953	0.0849828	0.0519464
chr22	20124043	20124138	7686883	0	+	0.621053	(0.58,1]	chr22	804213	10	INTRON	INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000331821.7:ENST00000411892.5:ENST00000423859.5:ENST00000418705.2:ENST00000448394.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	163	2	4.08431	5.477595	6.87088	0.00525202	2.92911e-5	0.0476984	0.00110673
chr20	8493638	8493738	7430204	0	+	0.49	(0.485,0.523]	chr20	773698	1216	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	857	2	5.46934	5.4773700000000005	5.4854	1.9346e-4	3.18367e-6	0.00784372	2.29035e-4
chr11	96166506	96166606	5111801	0	-	0.45	(0.419,0.45]	chr11	496566	726	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	4.78575	5.476935	6.16812	0.0224633	0.0123115	0.108193	0.0756356
chr17	77485425	77485525	6805236	0	+	0.52	(0.485,0.523]	chr17	686821	14	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	393	2	5.29952	5.47679	5.65406	7.33661e-4	1.76518e-5	0.0159757	7.69012e-4
chr10	127428302	127428402	4612231	0	+	0.54	(0.523,0.58]	chr10	440909	19	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.21727	5.47668	5.73609	0.0361597	0.0017613	0.127853	0.0211077
chr2	38576470	38576568	1124497	0	-	0.367347	(0.36,0.39]	chr2	123083	27	INTRON	INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000272249.7:ENST00000409328.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	191	2	3.74183	5.476335000000001	7.21084	0.0173883	5.30999e-5	0.0901374	0.00171796
chr2	72730606	72730706	1187247	0	-	0.38	(0.36,0.39]	chr2	128748	2	SS5_PROX	SS5_PROX:INTRON	EXOC6B	ENSG00000144036.16	ENST00000272427.11:ENST00000634650.1:ENST00000410104.1:ENST00000410112.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	70	2	5.31441	5.475804999999999	5.6372	0.024533	0.00715023	0.106796	0.0541241
chr8	8362279	8362379	3934229	0	-	0.49	(0.485,0.523]	chr8	376133	223	INTRON	INTRON	PRAG1	ENSG00000275342.5	ENST00000615670.5:ENST00000622241.1	protein_coding	protein_coding	protein_coding	protein_coding	2	264	2	4.12376	5.47563	6.8275	0.00318575	8.64447e-5	0.0360684	0.00245611
chr1	228143827	228143927	358022	0	+	0.49	(0.485,0.523]	chr1	40401	16	INTRON	INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	149	2	4.29031	5.47559	6.66087	0.00309962	0.00107516	0.0355173	0.0148869
chr16	1734584	1734684	6371284	0	+	0.62	(0.58,1]	chr16	628848	2	PRIMIRNA	PRIMIRNA:INTRON	MAPK8IP3:MIR3177	ENSG00000138834.15:ENSG00000265820.1	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1:ENST00000578255.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:processed_transcript:primary_miRNA	0	69	2	5.08534	5.475125	5.86491	0.00707578	0.00549379	0.0558168	0.0454065
chr16	85510285	85510385	6518174	0	+	0.6	(0.58,1]	chr16	646391	1510	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.08534	5.475125	5.86491	0.00707578	0.00549379	0.0558168	0.0454065
chr11	484952	485051	4784655	0	+	0.646465	(0.58,1]	chr11	457913	45	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	68	2	4.94882	5.474805	6.00079	0.0354433	4.59827e-4	0.127188	0.00821903
chr22	28445572	28445672	7779486	0	-	0.49	(0.485,0.523]	chr22	815741	26	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	1	179	2	3.98883	5.47475	6.96067	0.00941294	5.77936e-5	0.0653252	0.00182276
chr10	38115037	38115094	4478826	0	+	0.491228	(0.485,0.523]	chr10	428247	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF37A:PLD5P1	ENSG00000075407.19:ENSG00000283930.1	ENST00000638053.1:ENST00000351773.7:ENST00000685332.1:ENST00000361085.9:ENST00000479469.5:ENST00000640275.1:ENST00000477790.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	68	2	5.39869	5.474615	5.55054	0.0215787	0.00421243	0.100612	0.0380601
chr12	132532967	132533067	5352945	0	+	0.52	(0.485,0.523]	chr12	523670	46	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.39869	5.474615	5.55054	0.0215787	0.00421243	0.100612	0.0380601
chr22	20084307	20084405	7686495	0	+	0.520408	(0.485,0.523]	chr22	804119	33	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000457069.1	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.39869	5.474615	5.55054	0.0215787	0.00421243	0.100612	0.0380601
chr7	152332834	152332934	3736456	0	-	0.44	(0.419,0.45]	chr7	359231	17	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	74	2	5.04004	5.474565	5.90909	0.0184411	0.0137308	0.0927235	0.0814223
chr2	235728278	235728378	1064887	0	+	0.44	(0.419,0.45]	chr2	115681	95	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	78	2	4.85365	5.4744150000000005	6.09518	0.0197641	0.0138177	0.100774	0.0803169
chr6	151345840	151345939	3041142	0	+	0.434343	(0.419,0.45]	chr6	296466	37	INTRON	INTRON	AKAP12	ENSG00000131016.17	ENST00000402676.7:ENST00000253332.5:ENST00000354675.10:ENST00000359755.5:ENST00000490177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	73	2	5.09718	5.47419	5.8512	0.0201381	0.012235	0.0973365	0.0757339
chr3	52238691	52238791	1777965	0	-	0.5	(0.485,0.523]	chr3	184838	3	SS5_PROX	SS5_PROX:INTRON	TWF2	ENSG00000247596.10	ENST00000305533.10:ENST00000678838.1:ENST00000679296.1:ENST00000676989.1:ENST00000678549.1:ENST00000678700.1:ENST00000676800.1:ENST00000677127.1:ENST00000678681.1:ENST00000499914.2:ENST00000472755.2:ENST00000678330.1:ENST00000676988.1:ENST00000677058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	157	2	3.95058	5.47383	6.99708	0.00268525	0.00162697	0.0282638	0.0249683
chr17	17716231	17716331	6689197	0	+	0.57	(0.523,0.58]	chr17	671338	313	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.06957	5.473735	5.8779	0.0448011	0.00121652	0.140478	0.0162693
chr6	156856205	156856305	3050242	0	+	0.42	(0.419,0.45]	chr6	296993	264	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000636748.1:ENST00000494260.2:ENST00000636607.1:ENST00000414678.7:ENST00000638000.1:ENST00000636205.1:ENST00000637532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	70	2	5.18804	5.4737	5.75936	0.051668	0.00285253	0.148503	0.0294017
chr19	17483081	17483181	7220763	0	+	0.42	(0.419,0.45]	chr19	738259	120	INTRON	INTRON	SLC27A1	ENSG00000130304.17	ENST00000600277.5:ENST00000598424.5:ENST00000252595.12:ENST00000599380.5:ENST00000600297.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	261	2	3.39459	5.4735499999999995	7.55251	0.0027259	0.00113591	0.028553	0.0203584
chr13	33217996	33218096	5684777	0	-	0.35	(0.33,0.36]	chr13	558196	121	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	153	2	4.34915	5.4732199999999995	6.59729	0.00427093	0.00111275	0.0423709	0.0152496
chr2	73266993	73267087	1190598	0	-	0.446809	(0.419,0.45]	chr2	129025	3	SS3_PROX	SS3_PROX:INTRON	FBXO41	ENSG00000163013.12	ENST00000295133.9:ENST00000520530.3:ENST00000521871.5	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.35317	5.47316	5.59315	0.029494	0.00714797	0.116079	0.0541241
chr20	18643775	18643875	7443870	0	+	0.38	(0.36,0.39]	chr20	774758	112	INTRON	INTRON	ENSG00000284776:DTD1	ENSG00000284776.1:ENSG00000125821.13	ENST00000618693.4:ENST00000647441.1:ENST00000377452.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	69	2	5.28778	5.472899999999999	5.65802	0.0407706	0.003279	0.135868	0.0322062
chr8	18727600	18727700	3949245	0	-	0.47	(0.45,0.485]	chr8	377204	436	INTRON	INTRON	PSD3	ENSG00000156011.18	ENST00000327040.13:ENST00000440756.4:ENST00000286485.12:ENST00000523619.5:ENST00000518315.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	68	2	5.42587	5.47288	5.51989	0.0290571	0.00357389	0.116079	0.0342681
chr10	103699512	103699612	4757095	0	-	0.55	(0.523,0.58]	chr10	454791	60	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	69	2	5.25403	5.4727999999999994	5.69157	0.0172851	0.00573579	0.0897247	0.0467736
chr14	105442625	105442725	5927456	0	+	0.57	(0.523,0.58]	chr14	580172	35	INTRON	INTRON	MTA1	ENSG00000182979.18	ENST00000435036.6:ENST00000331320.12:ENST00000406191.5:ENST00000405646.5:ENST00000438610.5:ENST00000551236.5:ENST00000481012.5:ENST00000424723.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	69	2	5.25403	5.4727999999999994	5.69157	0.0172851	0.00573579	0.0897247	0.0467736
chr19	1998257	1998355	7307776	0	-	0.612245	(0.58,1]	chr19	753493	4	INTRON	INTRON	BTBD2	ENSG00000133243.10	ENST00000255608.9:ENST00000589200.3:ENST00000590646.5:ENST00000587742.5:ENST00000588395.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	65	2	5.35214	5.47269	5.59324	0.0181452	0.0014734	0.0921579	0.0185589
chr2	233166421	233166521	1058290	0	+	0.63	(0.58,1]	chr2	115120	16	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493078.1:ENST00000472517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	65	2	5.35214	5.47269	5.59324	0.0181452	0.0014734	0.0921579	0.0185589
chr2	165066434	165066534	942750	0	+	0.45	(0.419,0.45]	chr2	103910	724	INTRON	INTRON	ENSG00000236283	ENSG00000236283.5	ENST00000670672.1:ENST00000638199.1:ENST00000414885.2:ENST00000662281.1:ENST00000431341.1:ENST00000628085.2:ENST00000629817.2	lncRNA	lncRNA	lncRNA	lncRNA	0	75	2	4.98054	5.472645	5.96475	0.0169309	0.0154548	0.088829	0.0869771
chr2	186056274	186056374	1337857	0	-	0.38	(0.36,0.39]	chr2	142262	148	INTRON	INTRON	LINC01473	ENSG00000237877.7	ENST00000658984.1:ENST00000658990.1:ENST00000655126.1:ENST00000667839.1:ENST00000670612.1:ENST00000668985.1:ENST00000668977.1:ENST00000669598.1:ENST00000456653.6:ENST00000661574.1:ENST00000666677.1:ENST00000665629.1:ENST00000671116.1:ENST00000667983.1:ENST00000419719.2:ENST00000667056.1:ENST00000671599.1:ENST00000427108.6:ENST00000659769.1	lncRNA	lncRNA	lncRNA	lncRNA	0	69	2	5.45303	5.472635	5.49224	0.0304242	0.00525731	0.11845	0.044445
chr20	44359942	44360042	7482507	0	+	0.37	(0.36,0.39]	chr20	779618	37	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.45303	5.472635	5.49224	0.0304242	0.00525731	0.11845	0.044445
chr5	60233105	60233205	2676482	0	-	0.39	(0.36,0.39]	chr5	264416	443	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000502484.6:ENST00000509368.6:ENST00000509355.5:ENST00000506024.5:ENST00000506510.6:ENST00000511382.1:ENST00000505507.6:ENST00000514552.5:ENST00000515835.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	69	2	5.45303	5.472635	5.49224	0.0304242	0.00525731	0.11845	0.044445
chr9	6622088	6622186	4275231	0	-	0.387755	(0.36,0.39]	chr9	408394	14	INTRON	INTRON	GLDC	ENSG00000178445.10	ENST00000321612.8:ENST00000639364.1:ENST00000639954.1:ENST00000640592.1:ENST00000639840.1:ENST00000639020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	69	2	5.45303	5.472635	5.49224	0.0304242	0.00525731	0.11845	0.044445
chr10	132554357	132554457	4617004	0	+	0.6	(0.58,1]	chr10	441139	158	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.39546	5.47262	5.54978	0.0168207	0.00165911	0.0884836	0.0202545
chr6	3146450	3146549	2828603	0	+	0.626263	(0.58,1]	chr6	277604	56	INTRON	INTRON	BPHL	ENSG00000137274.13	ENST00000434640.5:ENST00000430655.6:ENST00000424847.6:ENST00000433912.5:ENST00000380379.10:ENST00000490918.5:ENST00000380375.4:ENST00000488487.2:ENST00000423798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	176	2	4.6529	5.47248	6.29206	0.00155479	1.89825e-4	0.0243306	0.0043642
chr9	93513368	93513468	4183112	0	+	0.49	(0.485,0.523]	chr9	397626	141	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000375389.7:ENST00000446420.2	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.06999	5.47215	5.87431	0.0445854	0.00127835	0.140478	0.0168904
chr14	101825222	101825322	5914050	0	+	0.31	(0.29,0.33]	chr14	578222	3	SS5_PROX	SS5_PROX:INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000328724.9:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556493.1:ENST00000553842.1:ENST00000556373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	69	2	5.24515	5.471995	5.69884	0.0155382	0.00631714	0.0849828	0.0501889
chr16	83921061	83921160	6513135	0	+	0.474747	(0.45,0.485]	chr16	646141	57	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	71	2	4.9538	5.4719750000000005	5.99015	0.0569772	0.00110015	0.154343	0.015136
chr11	17911003	17911102	5014347	0	-	0.40404	(0.39,0.419]	chr11	484610	324	INTRON	INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528369.5:ENST00000528200.5:ENST00000529440.5:ENST00000529151.5:ENST00000532546.5:ENST00000525920.5:ENST00000532265.5:ENST00000533241.1:ENST00000525168.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	69	2	5.45246	5.47167	5.49088	0.0309972	0.00529344	0.119758	0.044517
chr6	520579	520679	3077346	0	-	0.66	(0.58,1]	chr6	299297	205	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.11355	5.471595000000001	5.82964	0.0271806	7.58111e-4	0.112113	0.0117078
chr16	896065	896165	6530982	0	-	0.67	(0.58,1]	chr16	648670	26	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000566627.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	65	2	5.30747	5.471450000000001	5.63543	0.0196049	0.00131165	0.0955413	0.0171898
chr2	239284275	239284375	1391551	0	-	0.63	(0.58,1]	chr2	148740	327	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	65	2	5.30747	5.471450000000001	5.63543	0.0196049	0.00131165	0.0955413	0.0171898
chr5	1325916	1326014	2609072	0	-	0.683673	(0.58,1]	chr5	259715	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000506641.5:ENST00000507195.5:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	65	2	5.30747	5.471450000000001	5.63543	0.0196049	0.00131165	0.0955413	0.0171898
chr7	208597	208697	3305740	0	+	0.59	(0.58,1]	chr7	320156	3	SS3_PROX	SS3_PROX:INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6:ENST00000477004.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	65	2	5.30747	5.471450000000001	5.63543	0.0196049	0.00131165	0.0955413	0.0171898
chr5	150507963	150508046	2565090	0	+	0.626506	(0.58,1]	chr5	254948	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDST1	ENSG00000070614.15	ENST00000522491.1:ENST00000519157.1:ENST00000524161.1:ENST00000523767.5:ENST00000518299.1:ENST00000518346.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	65	2	5.43752	5.471245	5.50497	0.0156166	0.00187297	0.0849828	0.0219434
chr3	44473404	44473504	1755893	0	-	0.49	(0.485,0.523]	chr3	180946	147	INTRON	INTRON	ZNF445	ENSG00000185219.18	ENST00000396077.8:ENST00000474600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	69	2	5.25048	5.47124	5.692	0.0171772	0.0059614	0.0895975	0.0479866
chr17	317426	317526	6821450	0	-	0.56	(0.523,0.58]	chr17	689582	109	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	83	2	4.60868	5.471069999999999	6.33346	0.0226775	0.00571732	0.108193	0.0498083
chr17	43570698	43570798	6739272	0	+	0.46	(0.45,0.485]	chr17	678633	255	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	68	2	5.46558	5.47103	5.47648	0.0273644	0.0039628	0.112372	0.0368027
chr4	3369179	3369279	2005128	0	+	0.57	(0.523,0.58]	chr4	204663	258	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	78	2	4.58058	5.47086	6.36114	0.0860403	3.21725e-4	0.181766	0.0063695
chr19	9847829	9847929	7202732	0	+	0.59	(0.58,1]	chr19	734583	4	SS3_PROX	SS3_PROX:INTRON	PIN1	ENSG00000127445.14	ENST00000247970.9:ENST00000587625.5:ENST00000586025.5:ENST00000590540.5:ENST00000588695.5:ENST00000586352.5:ENST00000585442.5:ENST00000589058.5:ENST00000380889.6:ENST00000591777.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	66	2	5.31036	5.47077	5.63118	0.0109983	0.00312721	0.0708586	0.0311915
chr8	700195	700295	3932731	0	-	0.77	(0.58,1]	chr8	376054	72	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000524138.5:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	5.31036	5.47077	5.63118	0.0109983	0.00312721	0.0708586	0.0311915
chr8	25246455	25246555	3774703	0	+	0.6	(0.58,1]	chr8	363472	23	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000410074.5:ENST00000481100.5	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	4.95814	5.47068	5.98322	0.0074469	0.00562007	0.0553519	0.0493906
chr17	9413918	9414018	6853390	0	-	0.54	(0.523,0.58]	chr17	694499	349	INTRON	INTRON	STX8	ENSG00000170310.15	ENST00000306357.9:ENST00000575858.5:ENST00000570583.5:ENST00000574431.5:ENST00000575294.6:ENST00000574775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	68	2	5.35452	5.4706600000000005	5.5868	0.020474	0.00453096	0.0979776	0.0400651
chr7	73599425	73599525	3602851	0	-	0.6	(0.58,1]	chr7	347630	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	139	2	4.23567	5.47049	6.70531	0.00125905	8.49275e-4	0.0215793	0.0126615
chr6	158245892	158245992	3060974	0	+	0.37	(0.36,0.39]	chr6	297572	132	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	210	2	4.15391	5.47048	6.78705	0.00367488	6.06045e-4	0.0389784	0.0100269
chr13	75418983	75419083	5727374	0	-	0.37	(0.36,0.39]	chr13	561722	418	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	1	156	2	4.5642	5.47028	6.37636	0.00749622	6.80573e-4	0.0576451	0.0108629
chr2	152594143	152594243	928060	0	+	0.29	[0,0.29]	chr2	103106	127	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14:ENST00000492942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	74	2	4.68855	5.469875	6.2512	0.0554735	3.56971e-4	0.154188	0.00688785
chr19	36851254	36851347	7249344	0	+	0.494624	(0.485,0.523]	chr19	743114	2	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF345	ENSG00000251247.12	ENST00000589046.1:ENST00000586933.5:ENST00000420450.6:ENST00000614069.4:ENST00000532141.5:ENST00000526123.5:ENST00000432005.6:ENST00000529555.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	71	2	4.90542	5.46969	6.03396	0.0561086	8.35707e-4	0.154188	0.012554
chr16	89913627	89913721	6526312	0	+	0.595745	(0.58,1]	chr16	647716	1	UTR5	UTR5:EXON_MRNA:INTRON	ENSG00000267048:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000539976.1:ENST00000555427.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	3	249	2	4.60462	5.469495	6.33437	0.00276493	2.66288e-5	0.0332418	0.00103213
chr10	18556967	18557067	4642298	0	-	0.38	(0.36,0.39]	chr10	443321	46	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.04893	5.469275	5.88962	0.0166261	0.0125348	0.0884836	0.0765738
chr4	47528433	47528532	2039318	0	+	0.383838	(0.36,0.39]	chr4	208326	24	INTRON	INTRON	ATP10D	ENSG00000145246.14	ENST00000273859.8:ENST00000504445.1	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	5.04893	5.469275	5.88962	0.0166261	0.0125348	0.0884836	0.0765738
chr2	176291869	176291969	961940	0	+	0.52	(0.485,0.523]	chr2	105471	211	INTRON	INTRON	MTX2	ENSG00000128654.14	ENST00000420864.5:ENST00000249442.11:ENST00000423461.6:ENST00000443241.5:ENST00000452865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	68	2	5.35096	5.469094999999999	5.58723	0.0203514	0.0047171	0.0979211	0.0413976
chr11	34931784	34931884	4840032	0	+	0.37	(0.36,0.39]	chr11	463050	3	SS5_PROX	SS5_PROX:INTRON	PDHX	ENSG00000110435.13	ENST00000533550.5:ENST00000448838.8:ENST00000227868.9:ENST00000430469.6:ENST00000533262.1	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.40829	5.46908	5.52987	0.0287883	0.00581205	0.115991	0.0472624
chr12	132949965	132950064	5542031	0	-	0.616162	(0.58,1]	chr12	547064	13	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	65	2	5.26138	5.4689	5.67642	0.021217	0.00117039	0.0996078	0.0157899
chr19	36849901	36850001	7371654	0	-	0.58	(0.523,0.58]	chr19	764198	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF790	ENSG00000197863.9	ENST00000613249.4:ENST00000614179.4:ENST00000528994.5:ENST00000586323.5	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	4.96197	5.468885	5.9758	0.0521137	9.36996e-4	0.148503	0.0135546
chr2	235025977	235026077	1062232	0	+	0.48	(0.45,0.485]	chr2	115620	175	INTRON	INTRON	SH3BP4	ENSG00000130147.16	ENST00000392011.7:ENST00000416021.5:ENST00000409212.5:ENST00000344528.8:ENST00000444916.5:ENST00000446904.5:ENST00000454947.1	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.28846	5.46884	5.64922	0.020599	0.00612862	0.0982852	0.0489549
chr20	20465333	20465433	7533851	0	-	0.61	(0.58,1]	chr20	786266	528	INTRON	INTRON	RALGAPA2	ENSG00000188559.16	ENST00000202677.12:ENST00000430436.5	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	4.74346	5.4688300000000005	6.1942	0.0121457	0.00368616	0.0754623	0.0389784
chr14	93010894	93010994	6042638	0	-	0.55	(0.523,0.58]	chr14	592703	121	INTRON	INTRON	ITPK1	ENSG00000100605.17	ENST00000267615.11:ENST00000354313.7:ENST00000556603.6:ENST00000555495.5:ENST00000556954.5:ENST00000554999.5:ENST00000556185.5:ENST00000555553.5:ENST00000557309.1:ENST00000553452.5:ENST00000553655.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	73	2	4.78384	5.468755	6.15367	0.0663135	5.76607e-4	0.162385	0.00963379
chr4	152849646	152849745	2149458	0	+	0.353535	(0.33,0.36]	chr4	217819	196	INTRON	INTRON	ARFIP1	ENSG00000164144.16	ENST00000451320.6:ENST00000429148.6:ENST00000353617.7:ENST00000405727.6:ENST00000356064.3	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.32491	5.46851	5.61211	0.022456	0.00634179	0.102751	0.0501889
chr7	129267726	129267826	3475876	0	+	0.41	(0.39,0.419]	chr7	335957	419	INTRON	INTRON	AHCYL2	ENSG00000158467.17	ENST00000325006.8:ENST00000446544.6	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.24182	5.4685	5.69518	0.0441194	0.00302238	0.140174	0.0305643
chrX	24741074	24741174	7856359	0	+	0.41	(0.39,0.419]	chrX	824051	3	SS3_PROX	SS3_PROX:INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000678249.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	69	2	5.24182	5.4685	5.69518	0.0441194	0.00302238	0.140174	0.0305643
chr20	44203767	44203864	7564907	0	-	0.257732	[0,0.29]	chr20	790118	3	INTRON	INTRON	OSER1	ENSG00000132823.11	ENST00000255174.3:ENST00000372970.6	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.30082	5.46833	5.63584	0.0212677	0.00193639	0.0996805	0.0225083
chr5	881571	881668	2608191	0	-	0.597938	(0.58,1]	chr5	259472	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	141	2	4.89744	5.468185	6.03893	0.00503456	1.06039e-4	0.0464858	0.00286177
chr12	54326678	54326778	5236932	0	+	0.4	(0.39,0.419]	chr12	509133	6	INTRON	INTRON	COPZ1	ENSG00000111481.10	ENST00000552848.5:ENST00000548076.5:ENST00000553009.5:ENST00000549043.5:ENST00000262061.7:ENST00000552218.5:ENST00000551962.5:ENST00000550171.5:ENST00000455864.6:ENST00000552362.5:ENST00000553231.5:ENST00000550027.5:ENST00000551412.5:ENST00000549116.5:ENST00000551779.5:ENST00000548281.5:ENST00000548753.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	69	2	5.40772	5.468115	5.52851	0.029339	0.00585126	0.116079	0.0474117
chr17	9413819	9413918	6853389	0	-	0.414141	(0.39,0.419]	chr17	694499	348	INTRON	INTRON	STX8	ENSG00000170310.15	ENST00000306357.9:ENST00000575858.5:ENST00000570583.5:ENST00000574431.5:ENST00000575294.6:ENST00000574775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	70	2	5.09906	5.467985	5.83691	0.0535378	0.00215135	0.150319	0.0241566
chr6	147812225	147812325	3030291	0	+	0.41	(0.39,0.419]	chr6	295875	748	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	0	70	2	5.09906	5.467985	5.83691	0.0535378	0.00215135	0.150319	0.0241566
chr10	119442770	119442861	4595684	0	+	0.483516	(0.45,0.485]	chr10	439227	3	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.43172	5.46797	5.50422	0.0257993	0.00440365	0.109555	0.0393688
chr20	44405162	44405261	7482967	0	+	0.373737	(0.36,0.39]	chr20	779645	19	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	159	2	4.73459	5.46772	6.20085	0.0100561	4.2669e-4	0.0677306	0.00779962
chr1	43596358	43596457	107414	0	+	0.606061	(0.58,1]	chr1	13240	34	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	2	182	2	3.99252	5.467689999999999	6.94286	7.47593e-4	4.52248e-4	0.0161372	0.00816702
chr16	51145201	51145301	6588368	0	-	0.38	(0.36,0.39]	chr16	658639	14	INTRON	INTRON	SALL1	ENSG00000103449.13	ENST00000251020.9:ENST00000685868.1:ENST00000440970.6:ENST00000566102.1:ENST00000570206.2:ENST00000690502.1:ENST00000562674.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	161	2	4.80585	5.46748	6.12911	0.0113159	3.50036e-4	0.0722887	0.00676492
chr17	43142876	43142976	6737692	0	+	0.42	(0.419,0.45]	chr17	678321	3	SS5_PROX	SS5_PROX:INTRON	NBR2	ENSG00000198496.12	ENST00000657841.1:ENST00000460115.5:ENST00000467245.5	lncRNA	lncRNA	lncRNA	lncRNA	0	71	2	5.04043	5.467435	5.89444	0.0625897	0.00206691	0.160305	0.0235758
chr1	8509466	8509563	392635	0	-	0.443299	(0.419,0.45]	chr1	45009	4	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000656437.1:ENST00000464972.5:ENST00000659924.1:ENST00000480342.5:ENST00000507012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	69	2	5.36395	5.46723	5.57051	0.0407485	0.00441471	0.135868	0.0393688
chr1	68480193	68480286	506164	0	-	0.430108	(0.419,0.45]	chr1	60180	5	INTRON	INTRON	DEPDC1	ENSG00000024526.17	ENST00000370966.9:ENST00000456315.7:ENST00000488146.5:ENST00000489862.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	69	2	5.36395	5.46723	5.57051	0.0407485	0.00441471	0.135868	0.0393688
chr17	36512357	36512457	6889671	0	-	0.43	(0.419,0.45]	chr17	699507	3	SS5_PROX	SS5_PROX:INTRON	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000612097.1:ENST00000620413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	69	2	5.36395	5.46723	5.57051	0.0407485	0.00441471	0.135868	0.0393688
chr8	18913132	18913232	3951128	0	-	0.42	(0.419,0.45]	chr8	377294	262	INTRON	INTRON	PSD3	ENSG00000156011.18	ENST00000327040.13:ENST00000440756.4	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.36395	5.46723	5.57051	0.0407485	0.00441471	0.135868	0.0393688
chr3	71109841	71109941	1826515	0	-	0.43	(0.419,0.45]	chr3	188132	146	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000475937.6:ENST00000327590.9:ENST00000648426.1:ENST00000497355.7:ENST00000648748.3:ENST00000649695.3:ENST00000498215.7:ENST00000484350.5:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000491238.8:ENST00000648384.1:ENST00000648380.1:ENST00000650188.1:ENST00000650068.2:ENST00000468577.6:ENST00000649592.1:ENST00000648794.2:ENST00000649513.1:ENST00000649431.2:ENST00000647614.1:ENST00000472382.7:ENST00000649760.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	69	2	5.40477	5.46718	5.52959	0.0385125	0.00484244	0.131324	0.0418176
chr19	17484521	17484621	7220778	0	+	0.46	(0.45,0.485]	chr19	738264	4	SS5_PROX	SS5_PROX:INTRON	SLC27A1	ENSG00000130304.17	ENST00000600277.5:ENST00000598424.5:ENST00000252595.12:ENST00000599380.5:ENST00000600297.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	77	2	4.81772	5.46709	6.11646	0.0167663	0.00956667	0.0917029	0.0658012
chr19	49180351	49180450	7281490	0	+	0.454545	(0.45,0.485]	chr19	748358	79	INTRON	INTRON	TRPM4	ENSG00000130529.16	ENST00000598697.5:ENST00000252826.10:ENST00000595519.5:ENST00000427978.6:ENST00000598502.5:ENST00000596338.5:ENST00000601347.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	77	2	4.81772	5.46709	6.11646	0.0167663	0.00956667	0.0917029	0.0658012
chr16	85377141	85377241	6516842	0	+	0.58	(0.523,0.58]	chr16	646391	178	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	4.83424	5.466925	6.09961	0.0144272	0.00866655	0.0833845	0.0623824
chr2	3299093	3299193	1081098	0	-	0.44	(0.419,0.45]	chr2	117633	164	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	70	2	5.30548	5.4667650000000005	5.62805	0.0280406	0.00792071	0.113651	0.057762
chr1	43654694	43654793	107773	0	+	0.353535	(0.33,0.36]	chr1	13366	5	INTRON	INTRON	KDM4A	ENSG00000066135.13	ENST00000372396.4:ENST00000463151.5:ENST00000485249.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	68	2	5.38284	5.465965	5.54909	0.0317908	0.00379428	0.121384	0.0355124
chr13	32172168	32172268	5562370	0	+	0.45	(0.419,0.45]	chr13	548646	5	INTRON	INTRON	FRY	ENSG00000073910.23	ENST00000645780.1:ENST00000647500.1:ENST00000642040.1:ENST00000542859.6	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.44447	5.465965	5.48746	0.0364384	0.00532156	0.128173	0.0446153
chr2	10163948	10164047	717940	0	+	0.444444	(0.419,0.45]	chr2	84002	78	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	69	2	5.44447	5.465965	5.48746	0.0364384	0.00532156	0.128173	0.0446153
chr20	62959906	62960003	7508296	0	+	0.463918	(0.45,0.485]	chr20	783180	20	INTRON	INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	206	2	3.68222	5.46582	7.24942	0.00183454	0.0012056600000000001	0.0216929	0.0210584
chr2	665547	665645	1079800	0	-	0.5	(0.485,0.523]	chr2	117536	18	UTR3	UTR3:EXON_MRNA	TMEM18	ENSG00000151353.15	ENST00000281017.8	protein_coding	protein_coding	protein_coding	protein_coding	1	151	2	4.78049	5.465215000000001	6.14994	0.00788098	2.63267e-4	0.059464500000000003	0.00553857
chr1	2242024	2242124	4631	0	+	0.65	(0.58,1]	chr1	1048	90	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	182	2	4.24216	5.465075000000001	6.68799	0.00130716	2.03127e-4	0.0220198	0.00457973
chr1	3891971	3892067	386341	0	-	0.677083	(0.58,1]	chr1	44329	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	C1orf174	ENSG00000198912.12	ENST00000474140.1:ENST00000486765.5:ENST00000361605.4:ENST00000679703.1:ENST00000680054.1:ENST00000680279.1:ENST00000681823.1:ENST00000679946.1:ENST00000680169.1:ENST00000680535.1:ENST00000679929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	65	2	5.21377	5.465025000000001	5.71628	0.0230012	0.00104668	0.102982	0.0146403
chr1	43965938	43966035	110821	0	+	0.587629	(0.58,1]	chr1	13724	1	UTR5	UTR5:EXON_MRNA:INTRON	IPO13	ENSG00000117408.11	ENST00000372343.8:ENST00000372339.3	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.21377	5.465025000000001	5.71628	0.0230012	0.00104668	0.102982	0.0146403
chr20	36315502	36315602	7469142	0	+	0.63	(0.58,1]	chr20	777805	86	INTRON	INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.21377	5.465025000000001	5.71628	0.0230012	0.00104668	0.102982	0.0146403
chr14	104858741	104858836	6057864	0	-	0.536842	(0.523,0.58]	chr14	594723	11	EXON_LNCRNA	EXON_LNCRNA	ENSG00000258593	ENSG00000258593.2	ENST00000553344.2	lncRNA	lncRNA	lncRNA	lncRNA	0	67	2	5.35124	5.46502	5.5788	0.0295772	0.00262418	0.116079	0.0278348
chr3	13203625	13203725	1691178	0	-	0.57	(0.523,0.58]	chr3	176566	391	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.35124	5.46502	5.5788	0.0295772	0.00262418	0.116079	0.0278348
chr11	70535530	70535630	5059628	0	-	0.51	(0.485,0.523]	chr11	492663	322	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	147	2	4.49177	5.464874999999999	6.43798	0.00469187	6.09927e-4	0.0447158	0.0100466
chr13	48255156	48255236	5586265	0	+	0.4375	(0.419,0.45]	chr13	550892	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ITM2B	ENSG00000136156.15	ENST00000649266.1:ENST00000378549.5:ENST00000647800.2:ENST00000650479.1:ENST00000649452.1:ENST00000648898.1:ENST00000648586.1:ENST00000648312.1:ENST00000607866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	81	2	4.7145	5.46464	6.21478	0.0256236	0.011428	0.115966	0.0723462
chr17	82150959	82151059	6987883	0	-	0.62	(0.58,1]	chr17	714577	152	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000419322.6:ENST00000392346.6:ENST00000582040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	65	2	5.41094	5.464535	5.51813	0.013519	0.00240622	0.0792526	0.0261006
chr16	85387337	85387437	6516944	0	+	0.67	(0.58,1]	chr16	646391	280	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	4.89007	5.464499999999999	6.03893	0.00872525	0.00503456	0.0612699	0.0464858
chr10	18571957	18572057	4642448	0	-	0.44	(0.419,0.45]	chr10	443321	196	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	197	2	4.27493	5.46435	6.65377	0.00778307	2.95666e-4	0.0590114	0.00601525
chr10	92859912	92860012	4551299	0	+	0.47	(0.45,0.485]	chr10	434413	109	INTRON	INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1:ENST00000371552.8:ENST00000443748.6:ENST00000371543.5:ENST00000260762.10	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.20906	5.46417	5.71928	0.0399616	0.00219685	0.133954	0.0245167
chr7	127751094	127751194	3469227	0	+	0.48	(0.45,0.485]	chr7	335380	293	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	68	2	5.20906	5.46417	5.71928	0.0399616	0.00219685	0.133954	0.0245167
chr9	135835667	135835766	4431103	0	-	0.525253	(0.523,0.58]	chr9	423507	77	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.01677	5.46402	5.91127	0.0482765	0.00111349	0.144601	0.0152496
chrX	48987877	48987977	8041224	0	-	0.58	(0.523,0.58]	chrX	838890	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GRIPAP1	ENSG00000068400.13	ENST00000376423.8:ENST00000622599.4:ENST00000593475.5:ENST00000611757.4:ENST00000473581.5:ENST00000474512.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	69	2	5.01677	5.46402	5.91127	0.0482765	0.00111349	0.144601	0.0152496
chr6	138499032	138499132	3274134	0	-	0.37	(0.36,0.39]	chr6	316920	4	SS5_PROX	SS5_PROX:INTRON	NHSL1	ENSG00000135540.12	ENST00000427025.6:ENST00000343505.10:ENST00000342260.9:ENST00000426841.6:ENST00000491526.6:ENST00000533765.1:ENST00000479393.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	78	2	4.6317	5.463935	6.29617	0.0950937	6.68957e-4	0.189021	0.0107572
chr6	158026070	158026169	3059753	0	+	0.535354	(0.523,0.58]	chr6	297373	79	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.30515	5.463865	5.62258	0.0193313	0.00509102	0.0954446	0.0433513
chr1	144425016	144425102	574048	0	-	0.44186	(0.419,0.45]	chr1	65893	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF15	ENSG00000266338.7	ENST00000581897.7:ENST00000488031.6:ENST00000577412.6:ENST00000614785.5:ENST00000584793.7	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.27868	5.46386	5.64904	0.0457732	0.00368884	0.142336	0.0348088
chr1	220772631	220772731	345959	0	+	0.53	(0.523,0.58]	chr1	38740	92	INTRON	INTRON	MTARC2	ENSG00000117791.16	ENST00000359316.6:ENST00000366913.8:ENST00000425560.1	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.30795	5.463855000000001	5.61976	0.0315825	0.00236826	0.120781	0.0259199
chr11	96244795	96244895	5112584	0	-	0.44	(0.419,0.45]	chr11	496566	1509	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	2	472	2	5.21478	5.463855000000001	5.71293	5.74046e-4	1.22138e-4	0.0140322	0.00319013
chr14	68901878	68901978	5999360	0	-	0.58	(0.523,0.58]	chr14	588711	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6:ENST00000683261.1:ENST00000684096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	67	2	5.30795	5.463855000000001	5.61976	0.0315825	0.00236826	0.120781	0.0259199
chr19	16875155	16875255	7218137	0	+	0.55	(0.523,0.58]	chr19	737687	26	INTRON	INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000595541.1	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.30795	5.463855000000001	5.61976	0.0315825	0.00236826	0.120781	0.0259199
chr8	60810343	60810442	3822254	0	+	0.454545	(0.45,0.485]	chr8	367936	8	INTRON	INTRON	CHD7	ENSG00000171316.13	ENST00000423902.7:ENST00000695853.1:ENST00000524602.5:ENST00000525508.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	68	2	5.38553	5.4636949999999995	5.54186	0.0243502	0.00490471	0.106588	0.0422077
chr2	24311092	24311192	1104253	0	-	0.36	(0.33,0.36]	chr2	120585	4	SS3_PROX	SS3_PROX:INTRON	ITSN2	ENSG00000198399.16	ENST00000355123.9:ENST00000361999.7:ENST00000406921.7:ENST00000412011.5:ENST00000443927.5	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.29754	5.46369	5.62984	0.0360263	0.00313405	0.127853	0.0312116
chr3	60254028	60254128	1796147	0	-	0.36	(0.33,0.36]	chr3	186807	1733	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.29754	5.46369	5.62984	0.0360263	0.00313405	0.127853	0.0312116
chr7	40532403	40532503	3357846	0	+	0.36	(0.33,0.36]	chr7	324373	330	INTRON	INTRON	SUGCT	ENSG00000175600.16	ENST00000335693.9:ENST00000401647.7:ENST00000628514.3	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.29754	5.46369	5.62984	0.0360263	0.00313405	0.127853	0.0312116
chr7	78972927	78973026	3621721	0	-	0.353535	(0.33,0.36]	chr7	349212	256	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000440555.2:ENST00000636989.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	68	2	5.29754	5.46369	5.62984	0.0360263	0.00313405	0.127853	0.0312116
chr12	132742462	132742558	5539925	0	-	0.4375	(0.419,0.45]	chr12	546701	7	EXON_MRNA	EXON_MRNA:INTRON	ANKLE2	ENSG00000176915.15	ENST00000357997.10:ENST00000539605.5:ENST00000439231.6:ENST00000538591.5:ENST00000535036.5:ENST00000545623.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	69	2	5.44407	5.463585	5.4831	0.0345118	0.00585948	0.126025	0.0474117
chr14	100038757	100038857	5908629	0	+	0.44	(0.419,0.45]	chr14	577592	187	INTRON	INTRON	EVL	ENSG00000196405.13	ENST00000402714.6:ENST00000544450.6:ENST00000554460.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	69	2	5.44407	5.463585	5.4831	0.0345118	0.00585948	0.126025	0.0474117
chr9	6629565	6629665	4275307	0	-	0.43	(0.419,0.45]	chr9	408399	66	INTRON	INTRON	GLDC	ENSG00000178445.10	ENST00000321612.8:ENST00000639364.1:ENST00000639954.1:ENST00000640592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	69	2	5.44407	5.463585	5.4831	0.0345118	0.00585948	0.126025	0.0474117
chrX	27299010	27299110	7999836	0	-	0.42	(0.419,0.45]	chrX	836664	328	INTRON	INTRON	ENSG00000228933	ENSG00000228933.8	ENST00000422048.5:ENST00000669376.1	lncRNA	lncRNA	lncRNA	lncRNA	0	69	2	5.44407	5.463585	5.4831	0.0345118	0.00585948	0.126025	0.0474117
chr10	68758441	68758535	4499244	0	+	0.521277	(0.485,0.523]	chr10	430190	7	INTRON	INTRON	CCAR1	ENSG00000060339.14	ENST00000630771.2:ENST00000543719.5:ENST00000541012.5:ENST00000265872.11:ENST00000539539.5:ENST00000543229.5:ENST00000536012.5:ENST00000543225.5:ENST00000540210.5:ENST00000479143.2:ENST00000543706.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	178	2	3.88909	5.463575	7.03806	0.011267	4.56236e-5	0.0721366	0.00154047
chr4	888549	888648	2178488	0	-	0.666667	(0.58,1]	chr4	220626	29	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	66	2	5.0607	5.463115	5.86553	0.029633	6.8352e-4	0.116079	0.0108717
chr3	13024794	13024894	1689384	0	-	0.52	(0.485,0.523]	chr3	176542	23	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	1	147	2	4.52889	5.463065	6.39724	0.00505512	5.4844e-4	0.0465263	0.00933876
chr9	4714872	4714971	4269919	0	-	0.494949	(0.485,0.523]	chr9	407900	14	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.12092	5.463035	5.80515	0.0414411	0.00153111	0.136301	0.0191213
chr13	35359818	35359918	5572345	0	+	0.33	(0.29,0.33]	chr13	549589	71	INTRON	INTRON	NBEA	ENSG00000172915.20	ENST00000400445.8:ENST00000379939.7:ENST00000686320.1:ENST00000688626.1:ENST00000688363.1:ENST00000689207.1:ENST00000686386.1:ENST00000629018.4:ENST00000692737.1:ENST00000691097.1:ENST00000688312.1:ENST00000691637.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	67	2	5.31518	5.463	5.61082	0.0288318	0.00264971	0.116067	0.027979
chr6	15548362	15548461	3098660	0	-	0.393939	(0.39,0.419]	chr6	300772	1	INTRON	INTRON	DTNBP1	ENSG00000047579.20	ENST00000344537.10:ENST00000462989.6:ENST00000622898.4:ENST00000355917.7:ENST00000510395.5:ENST00000515875.5:ENST00000513680.5:ENST00000338950.9:ENST00000506844.1:ENST00000511762.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	78	2	4.63037	5.462985	6.2956	0.0963077	6.75278e-4	0.189169	0.010811
chr18	13589639	13589739	7026489	0	+	0.54	(0.523,0.58]	chr18	717646	38	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000677744.1:ENST00000593236.1:ENST00000678400.1:ENST00000586207.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	69	2	5.20104	5.462955	5.72487	0.0163679	0.00648051	0.0875379	0.0503748
chr12	132533764	132533863	5352953	0	+	0.626263	(0.58,1]	chr12	523670	54	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	2	184	2	3.83045	5.4628	7.09515	7.49029e-4	5.31842e-4	0.0134466	0.0116198
chr17	43545514	43545614	6739020	0	+	0.71	(0.58,1]	chr17	678633	3	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	3	453	2	5.18593	5.462725	5.73952	1.26423e-4	8.02683e-6	0.00622672	4.38969e-4
chr5	32157863	32157963	2630493	0	-	0.55	(0.523,0.58]	chr5	261026	136	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	152	2	4.04167	5.46246	6.88325	0.00206682	0.00204616	0.0283511	0.0235758
chr22	45291700	45291798	7738866	0	+	0.520408	(0.485,0.523]	chr22	811371	22	INTRON	INTRON	UPK3A	ENSG00000100373.10	ENST00000216211.9:ENST00000396082.2	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.43453	5.462095	5.48966	0.0258944	0.0033837199999999998	0.109555	0.0328791
chr6	154747812	154747912	3044256	0	+	0.4	(0.39,0.419]	chr6	296626	54	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	155	2	4.25158	5.462085	6.67259	0.00461678	0.00156775	0.0442497	0.0194695
chr12	132535058	132535157	5352966	0	+	0.50505	(0.485,0.523]	chr12	523670	67	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	147	2	4.5471	5.461765	6.37643	0.0052506	5.20483e-4	0.0476984	0.00899129
chr17	58090074	58090173	6764165	0	+	0.494949	(0.485,0.523]	chr17	682242	9	UTR3	UTR3:EXON_MRNA	DYNLL2	ENSG00000264364.3	ENST00000579991.3	protein_coding	protein_coding	protein_coding	protein_coding	1	149	2	4.7014	5.46155	6.2217	0.00693912	3.32408e-4	0.0553898	0.00652409
chr2	134236706	134236806	896598	0	+	0.53	(0.523,0.58]	chr2	101196	1092	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	67	2	5.26332	5.461455	5.65959	0.0337698	0.0021416	0.124319	0.0240825
chr13	33864520	33864620	5567094	0	+	0.49	(0.485,0.523]	chr13	549341	138	INTRON	INTRON	RFC3	ENSG00000133119.13	ENST00000434425.5:ENST00000616236.1	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.19749	5.4613949999999996	5.7253	0.0162644	0.00672953	0.0873195	0.0519464
chr21	46641648	46641747	7634703	0	+	0.50505	(0.485,0.523]	chr21	798554	43	INTRON	INTRON	PRMT2	ENSG00000160310.19	ENST00000451211.6:ENST00000458387.6:ENST00000397638.6:ENST00000291705.11:ENST00000397637.5:ENST00000334494.8:ENST00000355680.8:ENST00000397628.5:ENST00000440086.5	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.19749	5.4613949999999996	5.7253	0.0162644	0.00672953	0.0873195	0.0519464
chr22	50675651	50675751	7754920	0	+	0.55	(0.523,0.58]	chr22	812694	4	SS5_PROX	SS5_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	67	2	5.44845	5.4611350000000005	5.47382	0.0244797	0.00361636	0.106683	0.0342681
chr7	32738558	32738657	3341824	0	+	0.535354	(0.523,0.58]	chr7	323408	51	INTRON	INTRON	ZNRF2P1	ENSG00000237004.4	ENST00000650302.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	67	2	5.44845	5.4611350000000005	5.47382	0.0244797	0.00361636	0.106683	0.0342681
chr9	128765211	128765310	4415646	0	-	0.545455	(0.523,0.58]	chr9	421326	92	INTRON	INTRON	ZER1	ENSG00000160445.11	ENST00000291900.7:ENST00000494461.1:ENST00000414921.5:ENST00000427848.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	67	2	5.44845	5.4611350000000005	5.47382	0.0244797	0.00361636	0.106683	0.0342681
chr9	136207429	136207529	4433090	0	-	0.33	(0.29,0.33]	chr9	423667	12	UTR3	UTR3:EXON_MRNA	QSOX2	ENSG00000165661.17	ENST00000358701.10	protein_coding	protein_coding	protein_coding	protein_coding	1	147	2	4.41717	5.460545	6.50392	0.00368139	7.85621e-4	0.0389784	0.0120122
chr21	35942760	35942860	7666391	0	-	0.36	(0.33,0.36]	chr21	801118	779	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000475045.6	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	4.73368	5.460445	6.18721	0.0216127	0.00877878	0.105648	0.0630845
chr16	73055949	73056048	6627970	0	-	0.323232	(0.29,0.33]	chr16	663553	80	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2:ENST00000397992.5	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.43954	5.460305	5.48107	0.0222022	0.00401582	0.101857	0.0371286
chr8	38798080	38798180	3802543	0	+	0.42	(0.419,0.45]	chr8	365849	89	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5:ENST00000522544.5:ENST00000524354.5:ENST00000523239.5:ENST00000317827.9:ENST00000276520.12:ENST00000520973.5:ENST00000521528.6:ENST00000521935.5:ENST00000523834.1:ENST00000521154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	73	2	5.04004	5.460240000000001	5.88044	0.0192645	0.0137308	0.0954446	0.0814223
chr21	34993548	34993648	7656887	0	-	0.55	(0.523,0.58]	chr21	801067	1002	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000482318.5:ENST00000455571.5:ENST00000475045.6:ENST00000416754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	82	2	4.60868	5.460195	6.31171	0.0226775	0.00594629	0.108193	0.0506158
chr8	630237	630337	3932022	0	-	0.61	(0.58,1]	chr8	376005	26	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	187	2	3.71131	5.4600550000000005	7.2088	0.00107648	4.11273e-4	0.0148872	0.0116246
chr6	143560797	143560897	3016914	0	+	0.44	(0.419,0.45]	chr6	294985	232	INTRON	INTRON	PHACTR2	ENSG00000112419.15	ENST00000367584.8	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.39934	5.4600349999999995	5.52073	0.0327198	0.00646489	0.122543	0.0503748
chr1	154233593	154233692	247538	0	+	0.494949	(0.485,0.523]	chr1	28481	45	INTRON	INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000441890.5:ENST00000412596.5:ENST00000368504.5:ENST00000428931.6:ENST00000437652.5:ENST00000456325.5:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	3	236	2	3.81775	5.459985	7.10222	0.00132433	5.97897e-4	0.0222129	0.00992826
chrX	1424626	1424726	7965729	0	-	0.5	(0.485,0.523]	chrX	834272	24	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.26375	5.45988	5.65601	0.0335928	0.00224147	0.124319	0.024843
chr2	235504440	235504540	1062640	0	+	0.59	(0.58,1]	chr2	115651	92	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	896	2	5.37697	5.459645	5.54232	5.83048e-5	9.04869e-7	0.0042453	9.79814e-5
chr14	23094474	23094574	5939178	0	-	0.51	(0.485,0.523]	chr14	582245	1	SS5_PROX	SS5_PROX:INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000262710.5:ENST00000457657.5:ENST00000555053.5	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.44489	5.459569999999999	5.47425	0.0243396	0.00377098	0.106588	0.0353672
chr2	127387800	127387887	1265654	0	-	0.724138	(0.58,1]	chr2	136377	5	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.08534	5.459545	5.83375	0.00751249	0.00549379	0.0576451	0.0454065
chr7	1016325	1016425	3526386	0	-	0.67	(0.58,1]	chr7	340572	58	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	68	2	5.08534	5.459545	5.83375	0.00751249	0.00549379	0.0576451	0.0454065
chr16	8641030	8641130	6381030	0	+	0.3	(0.29,0.33]	chr16	631105	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	METTL22	ENSG00000067365.15	ENST00000163678.11:ENST00000381920.8:ENST00000561758.5:ENST00000568967.5:ENST00000572956.5:ENST00000561993.5:ENST00000563501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	197	2	4.04313	5.459455	6.87578	0.00179434	6.3144e-4	0.0262815	0.0102754
chr13	25274885	25274985	5673326	0	-	0.42	(0.419,0.45]	chr13	557343	3	INTRON	INTRON	MTMR6	ENSG00000139505.12	ENST00000381801.6	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.09718	5.45927	5.82136	0.0210659	0.012235	0.0996078	0.0757339
chr6	36177118	36177218	3128453	0	-	0.45	(0.419,0.45]	chr6	305020	178	INTRON	INTRON	BRPF3-AS1	ENSG00000246982.7	ENST00000526611.5:ENST00000499560.2	lncRNA	lncRNA	lncRNA	lncRNA	0	72	2	5.09718	5.45927	5.82136	0.0210659	0.012235	0.0996078	0.0757339
chr8	9772523	9772623	3754903	0	+	0.42	(0.419,0.45]	chr8	360887	1	SS5_PROX	SS5_PROX:INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	5.09718	5.45927	5.82136	0.0210659	0.012235	0.0996078	0.0757339
chr12	65928710	65928810	5256491	0	+	0.41	(0.39,0.419]	chr12	512321	133	INTRON	INTRON	HMGA2	ENSG00000149948.14	ENST00000403681.7:ENST00000541363.5:ENST00000393577.7:ENST00000539662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	70	2	5.04815	5.45921	5.87027	0.0572698	0.00198333	0.154343	0.0229039
chr19	36838095	36838165	7371534	0	-	0.628571	(0.58,1]	chr19	764193	1	SS5_PROX	SS5_PROX:INTRON	ZNF790	ENSG00000197863.9	ENST00000356725.9:ENST00000613249.4:ENST00000614179.4:ENST00000528994.5:ENST00000586323.5	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.36153	5.45917	5.55681	0.0126042	0.00273899	0.0761905	0.028553
chr8	118440660	118440760	4052265	0	-	0.44	(0.419,0.45]	chr8	386077	3	INTRON	INTRON	SAMD12	ENSG00000177570.15	ENST00000409003.5:ENST00000524796.6:ENST00000445741.6:ENST00000526328.6:ENST00000649198.1:ENST00000526765.6:ENST00000314727.9:ENST00000649630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	74	2	4.98054	5.458865	5.93719	0.0176643	0.0154548	0.0909046	0.0869771
chr21	43604571	43604670	7677116	0	-	0.454545	(0.45,0.485]	chr21	802562	119	INTRON	INTRON	HSF2BP	ENSG00000160207.9	ENST00000291560.7	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	4.89685	5.4587699999999995	6.02069	0.0614781	0.00101549	0.158506	0.0143256
chr19	19503599	19503695	7227734	0	+	0.479167	(0.45,0.485]	chr19	739895	7	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000360315.7:ENST00000609040.5:ENST00000683918.1:ENST00000404158.5:ENST00000358713.7:ENST00000418032.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	181	2	3.87699	5.458335	7.03968	0.012439	5.71642e-5	0.0761905	0.00180869
chr11	12857577	12857676	4803481	0	+	0.474747	(0.45,0.485]	chr11	460573	83	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6:ENST00000525312.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	68	2	5.33781	5.458175000000001	5.57854	0.0230065	0.0054758	0.102982	0.0454065
chr1	29237217	29237316	78380	0	+	0.585859	(0.58,1]	chr1	8914	1	INTRON	INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2	protein_coding	protein_coding	protein_coding	protein_coding	1	144	2	5.0207	5.458055	5.89541	0.0066708	7.05166e-5	0.0540577	0.00211595
chr14	70187532	70187632	5872713	0	+	0.58	(0.523,0.58]	chr14	573370	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000258422	ENSG00000258422.5	ENST00000555480.5	lncRNA	lncRNA	lncRNA	lncRNA	0	67	2	5.21727	5.4578050000000005	5.69834	0.0361597	0.00194036	0.127853	0.0225083
chr6	24270053	24270153	3109443	0	-	0.46	(0.45,0.485]	chr6	301412	646	INTRON	INTRON	DCDC2	ENSG00000146038.12	ENST00000378454.8	protein_coding	protein_coding	protein_coding	protein_coding	3	384	2	4.30662	5.45747	6.60832	0.00166292	2.02062e-4	0.0252462	0.00457229
chr13	112872686	112872782	5654399	0	+	0.5625	(0.523,0.58]	chr13	555052	5	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000471555.5:ENST00000415301.2:ENST00000419631.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	67	2	5.40225	5.45736	5.51247	0.0230387	0.00404292	0.102982	0.0371291
chr8	502889	502989	3931433	0	-	0.53	(0.523,0.58]	chr8	375980	79	INTRON	INTRON	TDRP	ENSG00000180190.13	ENST00000523656.5:ENST00000324079.11	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.40225	5.45736	5.51247	0.0230387	0.00404292	0.102982	0.0371291
chrX	48942897	48942996	8040904	0	-	0.535354	(0.523,0.58]	chrX	838808	62	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	67	2	5.40225	5.45736	5.51247	0.0230387	0.00404292	0.102982	0.0371291
chr1	3472091	3472191	5832	0	+	0.66	(0.58,1]	chr1	1235	3	SS5_PROX	SS5_PROX:INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5:ENST00000464620.1:ENST00000418137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	67	2	5.14497	5.457155	5.76934	0.00849371	0.00474658	0.0617717	0.0413976
chr8	108457221	108457320	3902459	0	+	0.444444	(0.419,0.45]	chr8	372963	9	INTRON	INTRON	EMC2	ENSG00000104412.8	ENST00000220853.8:ENST00000517784.5:ENST00000519642.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	161	2	4.00263	5.45695	6.91127	0.00356503	0.00312051	0.0383188	0.0311915
chr10	49865481	49865581	4685428	0	-	0.31	(0.29,0.33]	chr10	446788	1	SS3_PROX	SS3_PROX:INTRON	PARG	ENSG00000227345.9	ENST00000402038.7:ENST00000616448.2:ENST00000614063.4:ENST00000610922.1:ENST00000611974.4:ENST00000497481.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	67	2	5.22448	5.4569399999999995	5.6894	0.0331252	0.00217863	0.123313	0.0243976
chr21	31717814	31717913	7649989	0	-	0.313131	(0.29,0.33]	chr21	800068	111	INTRON	INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000485790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	67	2	5.22448	5.4569399999999995	5.6894	0.0331252	0.00217863	0.123313	0.0243976
chr14	103106384	103106484	5921883	0	+	0.56	(0.523,0.58]	chr14	579222	2	SS3_PROX	SS3_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	195	2	4.03059	5.45692	6.88325	0.00204616	6.09635e-4	0.0283511	0.0100457
chr14	71098512	71098611	5875165	0	+	0.434343	(0.419,0.45]	chr14	573613	43	INTRON	INTRON	PCNX1	ENSG00000100731.16	ENST00000304743.7:ENST00000439984.7:ENST00000554691.5:ENST00000557428.1:ENST00000556272.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	75	2	4.7549	5.45685	6.1588	0.0888907	0.00107628	0.183874	0.0148869
chr15	76337357	76337437	6156227	0	+	0.575	(0.523,0.58]	chr15	605675	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ISL2	ENSG00000159556.10	ENST00000290759.9:ENST00000558656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	68	2	5.06957	5.45665	5.84373	0.0448011	0.00133116	0.140478	0.0173248
chr19	7270295	7270395	7324979	0	-	0.45	(0.419,0.45]	chr19	756833	20	INTRON	INTRON	INSR	ENSG00000171105.14	ENST00000341500.9:ENST00000302850.10:ENST00000598216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	282	2	4.04734	5.456625000000001	6.86591	0.00543576	1.65832e-4	0.0486855	0.00396002
chr19	5816997	5817096	7195556	0	+	0.484848	(0.45,0.485]	chr19	733105	112	INTRON	INTRON	NRTN	ENSG00000171119.3	ENST00000303212.3	protein_coding	protein_coding	protein_coding	protein_coding	1	184	2	4.24577	5.456595	6.66742	0.0064383900000000004	1.70557e-4	0.0530091	0.00403679
chr14	57238268	57238359	5989008	0	-	0.340659	(0.33,0.36]	chr14	587422	2	INTRON	INTRON	EXOC5	ENSG00000070367.16	ENST00000621441.5:ENST00000413566.6:ENST00000340918.11:ENST00000555148.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	68	2	5.20687	5.45659	5.70631	0.041040600000000003	0.00260751	0.136289	0.0278222
chr10	132574041	132574141	4617201	0	+	0.57	(0.523,0.58]	chr10	441139	355	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	1	146	2	4.32303	5.456465	6.5899	0.00356891	9.56741e-4	0.0383188	0.013724
chr17	81231084	81231178	6983572	0	-	0.468085	(0.45,0.485]	chr17	713416	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TEPSIN	ENSG00000167302.11	ENST00000300714.7:ENST00000637944.2:ENST00000573295.5:ENST00000576090.5:ENST00000571115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	70	2	4.9538	5.45637	5.95894	0.0569772	0.00119342	0.154343	0.016037
chr12	62770945	62771045	5445752	0	-	0.49	(0.485,0.523]	chr12	535900	330	INTRON	INTRON	PPM1H	ENSG00000111110.12	ENST00000228705.7:ENST00000551519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	148	2	4.20112	5.45636	6.7116	0.00281636	0.00137422	0.0336649	0.0177822
chr20	345405	345505	7511897	0	-	0.5	(0.485,0.523]	chr20	783986	203	INTRON	INTRON	NRSN2-AS1	ENSG00000225377.6	ENST00000442637.2:ENST00000662580.1	lncRNA	lncRNA	lncRNA	lncRNA	0	67	2	5.21769	5.45623	5.69477	0.0359739	0.00203227	0.127853	0.0232814
chr3	15743596	15743695	1697651	0	-	0.343434	(0.33,0.36]	chr3	177540	60	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000476472.5:ENST00000460278.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	68	2	5.37262	5.4561399999999995	5.53966	0.0251076	0.00569729	0.107672	0.046716
chr20	36861461	36861561	7557116	0	-	0.44	(0.419,0.45]	chr20	789159	17	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.15214	5.455945	5.75975	0.0231013	0.0109324	0.102982	0.0706366
chr19	735110	735210	7184602	0	+	0.69	(0.58,1]	chr19	730569	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PALM	ENSG00000099864.18	ENST00000338448.10:ENST00000264560.11:ENST00000589012.5:ENST00000593172.5:ENST00000633534.1:ENST00000592155.5:ENST00000590161.2:ENST00000587513.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	182	2	4.78741	5.455925000000001	6.12444	0.00115271	3.17437e-4	0.0205679	0.00632787
chr8	30517213	30517313	3789500	0	+	0.39	(0.36,0.39]	chr8	364934	124	INTRON	INTRON	RBPMS	ENSG00000157110.16	ENST00000320203.8:ENST00000339877.8:ENST00000287771.9:ENST00000397323.9:ENST00000517860.5:ENST00000520161.5:ENST00000523115.5:ENST00000519647.5:ENST00000520191.5:ENST00000523717.5:ENST00000519359.5:ENST00000522694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	68	2	5.37307	5.45581	5.53855	0.0361409	0.00432809	0.127853	0.0389438
chr4	128858347	128858446	2132071	0	+	0.50505	(0.485,0.523]	chr4	216567	5	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.39869	5.455795	5.5129	0.0229047	0.00421243	0.102982	0.0380601
chr6	63641871	63641970	2934321	0	+	0.494949	(0.485,0.523]	chr6	288790	47	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	67	2	5.39869	5.455795	5.5129	0.0229047	0.00421243	0.102982	0.0380601
chr11	70812068	70812168	5062404	0	-	0.54	(0.523,0.58]	chr11	492713	45	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	68	2	5.25403	5.45576	5.65749	0.0182707	0.00573579	0.0921579	0.0467736
chr11	70813567	70813667	5062419	0	-	0.55	(0.523,0.58]	chr11	492713	60	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	68	2	5.25403	5.45576	5.65749	0.0182707	0.00573579	0.0921579	0.0467736
chr17	75956825	75956920	6973798	0	-	0.547368	(0.523,0.58]	chr17	711661	5	INTRON	INTRON	ACOX1	ENSG00000161533.12	ENST00000293217.10:ENST00000572047.5:ENST00000573078.5:ENST00000301608.8:ENST00000591857.5:ENST00000588176.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	68	2	5.25403	5.45576	5.65749	0.0182707	0.00573579	0.0921579	0.0467736
chr5	209149	209249	2607673	0	-	0.52	(0.485,0.523]	chr5	259392	28	INTRON	INTRON	CCDC127	ENSG00000164366.4	ENST00000296824.4:ENST00000441693.2	protein_coding	protein_coding	protein_coding	protein_coding	1	146	2	4.47284	5.45541	6.43798	0.00469187	6.43746e-4	0.0447158	0.0104271
chr17	72670150	72670250	6964980	0	-	0.43	(0.419,0.45]	chr17	710473	61	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000579988.1:ENST00000582769.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	69	2	5.35317	5.45528	5.55739	0.0310506	0.00714797	0.119758	0.0541241
chr5	139651865	139651965	2549679	0	+	0.38	(0.36,0.39]	chr5	253168	3	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.33106	5.4552700000000005	5.57948	0.0383628	0.00393844	0.131324	0.0367306
chr5	204601	204701	2607627	0	-	0.38	(0.36,0.39]	chr5	259387	79	UTR3	UTR3:EXON_MRNA	CCDC127	ENSG00000164366.4	ENST00000296824.4	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.4139	5.455159999999999	5.49642	0.0340874	0.00476539	0.125059	0.0414441
chr19	23324475	23324574	7358028	0	-	0.313131	(0.29,0.33]	chr19	762771	140	INTRON	INTRON	ZNF91	ENSG00000167232.14	ENST00000596528.1:ENST00000596989.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	68	2	5.24515	5.45495	5.66475	0.0164475	0.00631714	0.0877632	0.0501889
chr2	3298694	3298794	1081094	0	-	0.56	(0.523,0.58]	chr2	117633	160	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	146	2	4.30157	5.454715	6.60786	0.00345115	0.00101591	0.037649	0.0143256
chr17	2679886	2679978	6667329	0	+	0.413043	(0.39,0.419]	chr17	667991	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000397195.10:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000397193.7:ENST00000574468.1:ENST00000571495.2:ENST00000675574.1:ENST00000675385.1:ENST00000675084.1:ENST00000610190.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	68	2	5.41254	5.4542	5.49586	0.0347088	0.00479873	0.12648	0.0416285
chr20	4949705	4949805	7518057	0	-	0.4	(0.39,0.419]	chr20	784900	166	INTRON	INTRON	SLC23A2	ENSG00000089057.15	ENST00000379333.5:ENST00000338244.6:ENST00000468355.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	68	2	5.41254	5.4542	5.49586	0.0347088	0.00479873	0.12648	0.0416285
chr9	123407283	123407383	4396633	0	-	0.5	(0.485,0.523]	chr9	419589	34	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	68	2	5.25048	5.454195	5.65791	0.0181582	0.0059614	0.0921579	0.0479866
chr16	85389536	85389636	6516966	0	+	0.55	(0.523,0.58]	chr16	646391	302	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	4.83424	5.45412	6.074	0.0144272	0.00906277	0.0833845	0.0637469
chr19	35000586	35000686	7244862	0	+	0.8	(0.58,1]	chr19	742058	1	SS5_PROX	SS5_PROX:INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	192	2	4.93962	5.45388	5.96814	8.1793e-4	5.06433e-4	0.0170128	0.00881473
chr22	28445672	28445772	7779487	0	-	0.46	(0.45,0.485]	chr22	815741	27	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	1	184	2	3.65973	5.45369	7.24765	0.0180534	3.05036e-5	0.0921579	0.00114349
chr3	27254911	27255011	1719471	0	-	0.34	(0.33,0.36]	chr3	178436	386	INTRON	INTRON	NEK10	ENSG00000163491.17	ENST00000691995.1:ENST00000429845.6:ENST00000574215.5:ENST00000341435.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	69	2	5.0592	5.453635	5.84807	0.0504445	0.00184078	0.148216	0.0217471
chrX	123680752	123680852	8098883	0	-	0.38	(0.36,0.39]	chrX	844533	86	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5:ENST00000433883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	68	2	5.28778	5.4535350000000005	5.61929	0.0407706	0.00359045	0.135868	0.0342681
chr1	28467367	28467467	74108	0	+	0.4	(0.39,0.419]	chr1	8420	2	INTRON	INTRON	PHACTR4	ENSG00000204138.13	ENST00000632421.1:ENST00000373839.8:ENST00000493669.2:ENST00000373836.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	71	2	4.9406	5.4532799999999995	5.96596	0.0658437	0.00156652	0.162385	0.0194594
chr10	132754672	132754772	4619019	0	+	0.64	(0.58,1]	chr10	441201	8	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.00585	5.4532	5.90055	0.0323732	6.1741e-4	0.121593	0.0101143
chr4	856393	856492	2178148	0	-	0.606061	(0.58,1]	chr4	220550	27	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5:ENST00000511980.5:ENST00000510799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	66	2	5.00585	5.4532	5.90055	0.0323732	6.1741e-4	0.121593	0.0101143
chr4	3364991	3365091	2005086	0	+	0.64	(0.58,1]	chr4	204663	216	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	65	2	5.11355	5.45319	5.79283	0.0271806	8.4246e-4	0.112113	0.0125912
chr9	127549059	127549159	4411994	0	-	0.5	(0.485,0.523]	chr9	420485	169	INTRON	INTRON	NIBAN2	ENSG00000136830.12	ENST00000373314.7:ENST00000373312.4:ENST00000478917.1:ENST00000468379.1:ENST00000484348.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	70	2	5.08528	5.4530449999999995	5.82081	0.0138807	0.0086528	0.0804838	0.0612699
chr14	89322714	89322814	6027328	0	-	0.53	(0.523,0.58]	chr14	591449	378	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	67	2	5.16969	5.45289	5.73609	0.0387762	0.0017613	0.131324	0.0211077
chr15	75016492	75016592	6153379	0	+	0.58	(0.523,0.58]	chr15	605299	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SCAMP5	ENSG00000198794.12	ENST00000568423.5:ENST00000562327.5:ENST00000568018.5:ENST00000425597.8:ENST00000562212.5:ENST00000565923.5:ENST00000562765.5:ENST00000567920.5:ENST00000361900.10:ENST00000564491.5:ENST00000566872.5:ENST00000564141.1:ENST00000565989.5:ENST00000564779.5:ENST00000567529.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	67	2	5.16969	5.45289	5.73609	0.0387762	0.0017613	0.131324	0.0211077
chr16	85387437	85387537	6516945	0	+	0.54	(0.523,0.58]	chr16	646391	281	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	4.96714	5.45289	5.93864	0.0114442	0.0108948	0.0723462	0.0706366
chr21	35442769	35442869	7661387	0	-	0.53	(0.523,0.58]	chr21	801090	33	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000475045.6:ENST00000467692.5:ENST00000494829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	72	2	4.96714	5.45289	5.93864	0.0114442	0.0108948	0.0723462	0.0706366
chr21	35942560	35942660	7666389	0	-	0.45	(0.419,0.45]	chr21	801118	777	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000475045.6	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	4.78575	5.452825000000001	6.1199	0.0224633	0.0132894	0.108193	0.0787251
chr8	119219487	119219587	3904794	0	+	0.48	(0.45,0.485]	chr8	373178	99	INTRON	INTRON	MAL2	ENSG00000147676.14	ENST00000522112.6:ENST00000534619.5:ENST00000614891.5:ENST00000531508.1	protein_coding	protein_coding	protein_coding	protein_coding	1	185	2	4.29692	5.45262	6.60832	0.00586251	2.02062e-4	0.0506158	0.00457229
chr22	35850282	35850382	7804041	0	-	0.4	(0.39,0.419]	chr22	817785	98	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000359369.8:ENST00000695807.1:ENST00000408983.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	68	2	5.28643	5.4525749999999995	5.61872	0.041475	0.00361685	0.136301	0.0342681
chr3	48087372	48087472	1765939	0	-	0.46	(0.45,0.485]	chr3	182011	711	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.34301	5.45252	5.56203	0.0328801	0.00322991	0.122593	0.0319521
chr6	137215677	137215777	3272660	0	-	0.46	(0.45,0.485]	chr6	316798	3	SS3_PROX	SS3_PROX:INTRON	IFNGR1	ENSG00000027697.16	ENST00000458076.6:ENST00000696695.1:ENST00000367739.9:ENST00000696694.1:ENST00000645045.1:ENST00000643119.1:ENST00000696693.1:ENST00000414770.6:ENST00000696696.1:ENST00000644894.1:ENST00000646898.1:ENST00000646036.1:ENST00000645753.1:ENST00000642390.1:ENST00000647124.1:ENST00000696697.1:ENST00000696698.1:ENST00000696699.1:ENST00000478333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	67	2	5.34301	5.45252	5.56203	0.0328801	0.00322991	0.122593	0.0319521
chr8	9771683	9771775	3754893	0	+	0.478261	(0.45,0.485]	chr8	360881	11	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.34301	5.45252	5.56203	0.0328801	0.00322991	0.122593	0.0319521
chr2	101125049	101125149	1239834	0	-	0.47	(0.45,0.485]	chr2	133786	152	INTRON	INTRON	TBC1D8	ENSG00000204634.13	ENST00000409318.2:ENST00000376840.8:ENST00000463469.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	67	2	5.38503	5.45246	5.51989	0.0308908	0.00357389	0.119556	0.0342681
chr20	341318	341418	7511856	0	-	0.48	(0.45,0.485]	chr20	783986	162	INTRON	INTRON	NRSN2-AS1	ENSG00000225377.6	ENST00000442637.2:ENST00000662580.1	lncRNA	lncRNA	lncRNA	lncRNA	0	67	2	5.38503	5.45246	5.51989	0.0308908	0.00357389	0.119556	0.0342681
chr10	79168025	79168125	4533037	0	+	0.58	(0.523,0.58]	chr10	432438	55	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.35452	5.45232	5.55012	0.0217068	0.00453096	0.100615	0.0400651
chr2	186127210	186127310	1338575	0	-	0.43	(0.419,0.45]	chr2	142311	83	INTRON	INTRON	LINC01473	ENSG00000237877.7	ENST00000658984.1:ENST00000658990.1:ENST00000655126.1:ENST00000667839.1:ENST00000670612.1:ENST00000668985.1:ENST00000661574.1:ENST00000666677.1:ENST00000665629.1:ENST00000671116.1:ENST00000419719.2:ENST00000667056.1:ENST00000671599.1	lncRNA	lncRNA	lncRNA	lncRNA	2	428	2	5.12112	5.452265000000001	5.78341	0.00172977	2.32958e-5	0.0257605	9.37335e-4
chr11	70785551	70785651	5062137	0	-	0.63	(0.58,1]	chr11	492701	677	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	5.20223	5.45207	5.70191	0.00964351	0.00411607	0.0659937	0.0374453
chr19	33422934	33423033	7365067	0	-	0.383838	(0.36,0.39]	chr19	763415	89	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000590731.6:ENST00000609145.5:ENST00000588719.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	69	2	5.1004	5.451865	5.80333	0.0526991	0.00231859	0.14912	0.0255753
chr14	89255810	89255909	6026656	0	-	0.484848	(0.45,0.485]	chr14	591432	246	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	254	2	3.22436	5.451715	7.67907	0.00344108	5.19089e-4	0.0333853	0.0132519
chr6	79065799	79065898	3184760	0	-	0.171717	[0,0.29]	chr6	309201	46	INTRON	INTRON	PHIP	ENSG00000146247.14	ENST00000275034.5	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.04518	5.451695	5.85821	0.00813784	0.00783384	0.0592199	0.0588114
chr12	23950768	23950868	5388537	0	-	0.41	(0.39,0.419]	chr12	528206	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SOX5	ENSG00000134532.19	ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2:ENST00000536729.2:ENST00000446891.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	255	2	4.9307	5.451639999999999	5.97258	0.0148746	6.5254e-5	0.0833515	0.00199402
chr22	36330044	36330143	7806819	0	-	0.535354	(0.523,0.58]	chr22	818135	12	INTRON	INTRON	MYH9	ENSG00000100345.23	ENST00000216181.11:ENST00000685801.1:ENST00000692930.1:ENST00000685187.1:ENST00000691687.1:ENST00000685191.1:ENST00000688137.1:ENST00000401701.1:ENST00000691296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	145	2	4.44549	5.4514949999999995	6.4575	0.0045605	6.76791e-4	0.0438198	0.0108252
chr17	4196151	4196241	6840775	0	-	0.455556	(0.45,0.485]	chr17	692376	3	INTRON	INTRON	ANKFY1	ENSG00000185722.18	ENST00000341657.9:ENST00000648043.1:ENST00000570535.5:ENST00000574367.5:ENST00000572412.5:ENST00000570934.5:ENST00000573250.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	68	2	5.28846	5.451385	5.61431	0.0217589	0.00612862	0.100615	0.0489549
chr5	171397363	171397462	2590254	0	+	0.474747	(0.45,0.485]	chr5	257001	40	INTRON	INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	68	2	5.28846	5.451385	5.61431	0.0217589	0.00612862	0.100615	0.0489549
chr6	13591368	13591468	2855861	0	+	0.46	(0.45,0.485]	chr6	279047	3	SS3_PROX	SS3_PROX:INTRON	SIRT5	ENSG00000124523.17	ENST00000680432.1:ENST00000681012.1:ENST00000397350.7:ENST00000680442.1:ENST00000680754.1:ENST00000679658.1:ENST00000681243.1:ENST00000680747.1:ENST00000681818.1:ENST00000680402.1:ENST00000679663.1:ENST00000379250.10:ENST00000680852.1:ENST00000679922.1:ENST00000681231.1:ENST00000359782.8:ENST00000606117.2:ENST00000379262.8:ENST00000681905.1:ENST00000680937.1:ENST00000680151.1:ENST00000680707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	67	2	5.29973	5.4513549999999995	5.60298	0.035042	0.00292492	0.12704	0.029882
chr8	18821667	18821766	3950210	0	-	0.454545	(0.45,0.485]	chr8	377272	129	INTRON	INTRON	PSD3	ENSG00000156011.18	ENST00000327040.13:ENST00000440756.4:ENST00000523619.5:ENST00000519851.5:ENST00000518303.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	67	2	5.29973	5.4513549999999995	5.60298	0.035042	0.00292492	0.12704	0.029882
chr1	30934942	30935042	434623	0	-	0.5	(0.485,0.523]	chr1	51446	12	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000530669.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	67	2	5.17012	5.451315	5.73251	0.038581	0.00184599	0.131324	0.0217471
chr7	1938292	1938392	3529607	0	-	0.5	(0.485,0.523]	chr7	340962	10	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000450235.5:ENST00000437877.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	67	2	5.17012	5.451315	5.73251	0.038581	0.00184599	0.131324	0.0217471
chr1	210654020	210654119	332872	0	+	0.464646	(0.45,0.485]	chr1	37390	300	INTRON	INTRON	HHAT	ENSG00000054392.13	ENST00000541565.5:ENST00000413764.6:ENST00000261458.8:ENST00000537898.5:ENST00000545154.5:ENST00000367010.5:ENST00000367009.2	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	4.7111	5.4513	6.1915	0.0781398	6.44145e-4	0.175203	0.0104271
chr14	56583714	56583812	5825836	0	+	0.459184	(0.45,0.485]	chr14	569604	33	INTRON	INTRON	TMEM260	ENSG00000070269.14	ENST00000556810.5:ENST00000556422.5:ENST00000261556.11:ENST00000557657.5:ENST00000555497.5:ENST00000556975.5:ENST00000557626.5:ENST00000539559.6:ENST00000538838.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	67	2	5.42587	5.451174999999999	5.47648	0.0290571	0.0039628	0.116079	0.0368027
chr3	9437486	9437585	1402508	0	+	0.383838	(0.36,0.39]	chr3	150160	2	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1:ENST00000684055.1:ENST00000407969.5:ENST00000490791.5:ENST00000493918.5:ENST00000691659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	69	2	5.26508	5.4511400000000005	5.6372	0.024533	0.00795848	0.106796	0.0578938
chr5	175956331	175956431	2814850	0	-	0.59	(0.58,1]	chr5	275564	292	INTRON	INTRON	THOC3	ENSG00000051596.10	ENST00000432305.6:ENST00000515016.1	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.35214	5.45096	5.54978	0.0181452	0.00165911	0.0921579	0.0202545
chr4	54058390	54058489	2238672	0	-	0.333333	(0.33,0.36]	chr4	225543	87	INTRON	INTRON	CHIC2	ENSG00000109220.11	ENST00000263921.8:ENST00000512964.5:ENST00000510894.1:ENST00000509678.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	151	2	4.51528	5.45077	6.38626	0.00621741	7.08947e-4	0.052147	0.0111903
chr5	78592586	78592686	2702810	0	-	0.36	(0.33,0.36]	chr5	266653	25	INTRON	INTRON	LHFPL2	ENSG00000145685.14	ENST00000380345.7:ENST00000503686.5:ENST00000512759.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	78	2	4.57035	5.450755	6.33116	0.0945416	5.26307e-4	0.188571	0.00904627
chr19	575140	575212	7184145	0	+	0.666667	(0.58,1]	chr19	730452	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000613627.5:ENST00000576925.4:ENST00000573216.5:ENST00000572899.6:ENST00000333511.9:ENST00000353555.9:ENST00000590218.4:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000574970.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	71	2	4.89007	5.450704999999999	6.01134	0.00872525	0.00531709	0.0612699	0.047841
chr18	77128443	77128543	7181607	0	-	0.47	(0.45,0.485]	chr18	730193	6	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	69	2	5.18438	5.4504850000000005	5.71659	0.018513	0.00773818	0.0928429	0.0568726
chr17	15467540	15467621	6860110	0	-	0.54321	(0.523,0.58]	chr17	695070	2	UTR5	UTR5:EXON_MRNA:INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	235	2	3.93161	5.4503699999999995	6.96913	0.0017332	4.136e-4	0.0257605	0.00767371
chr16	75236599	75236695	6644474	0	-	0.583333	(0.58,1]	chr16	664411	2	SS5_PROX	SS5_PROX:INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000566982.1:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10:ENST00000569340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	64	2	5.30747	5.450355	5.59324	0.0196049	0.0014734	0.0955413	0.0185589
chr17	6640336	6640436	6845814	0	-	0.65	(0.58,1]	chr17	693254	3	SS5_PROX	SS5_PROX:INTRON	KIAA0753	ENSG00000198920.11	ENST00000361413.8:ENST00000572370.5:ENST00000571642.5:ENST00000570455.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	64	2	5.30747	5.450355	5.59324	0.0196049	0.0014734	0.0955413	0.0185589
chr12	132779599	132779699	5540247	0	-	0.37	(0.36,0.39]	chr12	546769	14	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	68	2	5.40829	5.450265	5.49224	0.0304242	0.00581205	0.11845	0.0472624
chr19	39158443	39158543	7259593	0	+	0.59	(0.58,1]	chr19	744161	12	INTRON	INTRON	PAK4	ENSG00000130669.17	ENST00000602004.1:ENST00000599470.5:ENST00000360442.8:ENST00000321944.8:ENST00000593480.5:ENST00000358301.7:ENST00000593690.5:ENST00000599386.5:ENST00000599657.5	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.39546	5.450215	5.50497	0.0168207	0.00187297	0.0884836	0.0219434
chr18	54211331	54211431	7167900	0	-	0.4	(0.39,0.419]	chr18	728580	58	INTRON	INTRON	MBD2	ENSG00000134046.12	ENST00000256429.8:ENST00000398398.6:ENST00000583046.1	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.26451	5.45018	5.63585	0.025023	0.00800901	0.10758	0.0580954
chr13	32679823	32679922	5565524	0	+	0.494949	(0.485,0.523]	chr13	549138	5	INTRON	INTRON	PDS5B	ENSG00000083642.19	ENST00000315596.15:ENST00000498550.5:ENST00000450460.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	69	2	5.14248	5.45016	5.75784	0.0154142	0.00761903	0.0849828	0.0561937
chr10	100549831	100549931	4569164	0	+	0.49	(0.485,0.523]	chr10	436105	18	UTR3	UTR3:EXON_MRNA	HIF1AN	ENSG00000166135.14	ENST00000299163.7	protein_coding	protein_coding	protein_coding	protein_coding	3	516	2	5.21145	5.450075	5.6887	3.27402e-4	1.63434e-5	0.0103099	7.27296e-4
chr1	43964821	43964914	110809	0	+	0.44086	(0.419,0.45]	chr1	13723	1	INTRON	INTRON	IPO13	ENSG00000117408.11	ENST00000372343.8	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.1405	5.44993	5.75936	0.0550015	0.00285253	0.153337	0.0294017
chr13	33214798	33214898	5684745	0	-	0.44	(0.419,0.45]	chr13	558196	89	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	69	2	5.1405	5.44993	5.75936	0.0550015	0.00285253	0.153337	0.0294017
chr2	164714088	164714188	1298256	0	-	0.45	(0.419,0.45]	chr2	139237	86	INTRON	INTRON	COBLL1	ENSG00000082438.18	ENST00000652658.2:ENST00000375458.6:ENST00000342193.8:ENST00000409184.8:ENST00000493868.5:ENST00000629362.2:ENST00000456171.5:ENST00000491126.6:ENST00000434366.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	69	2	5.1405	5.44993	5.75936	0.0550015	0.00285253	0.153337	0.0294017
chr17	7446472	7446562	6676742	0	+	0.477778	(0.45,0.485]	chr17	669645	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CHRNB1	ENSG00000170175.11	ENST00000306071.7:ENST00000572857.5:ENST00000570557.5:ENST00000536404.6:ENST00000576360.1:ENST00000573209.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	74	2	4.88567	5.449365	6.01306	0.0146126	0.0113949	0.0837727	0.0723462
chr7	157353548	157353648	3521875	0	+	0.42	(0.419,0.45]	chr7	340131	131	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000439402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	69	2	5.30548	5.449315	5.59315	0.029494	0.00792071	0.116079	0.057762
chr7	112472961	112473061	3448798	0	+	0.43	(0.419,0.45]	chr7	334075	1	SS5_PROX	SS5_PROX:INTRON	IFRD1	ENSG00000006652.15	ENST00000675578.1:ENST00000621379.4:ENST00000005558.8:ENST00000403825.8:ENST00000674915.1:ENST00000674887.1:ENST00000675041.1:ENST00000675717.1:ENST00000535603.5:ENST00000489994.5:ENST00000462155.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	211	2	3.71644	5.449085	7.18173	0.00221619	0.002104	0.0295806	0.0239483
chr19	944214	944314	7185288	0	+	0.71	(0.58,1]	chr19	730741	111	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	559	2	4.66548	5.44852	6.23156	3.84935e-5	2.15166e-5	0.00344738	8.8591e-4
chr17	83025479	83025579	6990802	0	-	0.6	(0.58,1]	chr17	715120	106	INTRON	INTRON	B3GNTL1	ENSG00000175711.9	ENST00000320865.4:ENST00000576599.5:ENST00000570947.5:ENST00000571954.5:ENST00000573629.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	5.26138	5.448405	5.63543	0.021217	0.00131165	0.0996078	0.0171898
chr6	48007933	48008033	3146027	0	-	0.42	(0.419,0.45]	chr6	306778	1056	INTRON	INTRON	PTCHD4	ENSG00000244694.8	ENST00000339488.9:ENST00000398738.3:ENST00000679966.1	protein_coding	protein_coding	protein_coding	protein_coding	2	209	2	3.82479	5.44838	7.07197	0.00269142	0.00158831	0.0329086	0.0196806
chr8	630137	630237	3932021	0	-	0.62	(0.58,1]	chr8	376005	25	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	160	2	3.95688	5.44836	6.93984	0.00681628	2.32442e-5	0.0548279	9.36605e-4
chr12	15780178	15780278	5380402	0	-	0.31	(0.29,0.33]	chr12	527514	2	SS5_PROX	SS5_PROX:INTRON	EPS8	ENSG00000151491.14	ENST00000281172.10:ENST00000543523.5:ENST00000543468.5:ENST00000644374.1:ENST00000646918.1:ENST00000645775.1:ENST00000642939.1:ENST00000646828.1:ENST00000647224.1:ENST00000642278.1:ENST00000646123.1:ENST00000647087.1:ENST00000536956.5:ENST00000535752.5:ENST00000536793.5:ENST00000543363.5:ENST00000544064.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	148	2	4.66798	5.4482800000000005	6.22858	0.00614258	3.84372e-4	0.0517628	0.00726694
chr21	45454621	45454721	7630809	0	+	0.65	(0.58,1]	chr21	797656	488	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.43752	5.448119999999999	5.45872	0.0156166	0.00211999	0.0849828	0.0239744
chr5	652887	652987	2378811	0	+	0.66	(0.58,1]	chr5	237648	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	64	2	5.43752	5.448119999999999	5.45872	0.0156166	0.00211999	0.0849828	0.0239744
chr15	56977562	56977662	6110932	0	+	0.43	(0.419,0.45]	chr15	601587	561	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	156	2	4.54948	5.447905	6.34633	0.00923958	7.67962e-4	0.0644666	0.0118316
chr22	28887359	28887459	7705314	0	+	0.46	(0.45,0.485]	chr22	806317	29	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7	protein_coding	protein_coding	protein_coding	protein_coding	2	394	2	5.11768	5.44787	5.77806	0.001223	1.4385e-5	0.021209	6.61734e-4
chr17	315834	315934	6821434	0	-	0.61	(0.58,1]	chr17	689582	93	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	190	2	3.58144	5.447795	7.31415	0.00158507	3.2338e-4	0.0196418	0.0102338
chr16	81550380	81550480	6508797	0	+	0.62	(0.58,1]	chr16	645911	545	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	140	2	4.0743	5.4476700000000005	6.82104	0.00136577	9.78215e-4	0.0187475	0.0176851
chr4	113692460	113692560	2313743	0	-	0.21	[0,0.29]	chr4	232470	303	INTRON	INTRON	CAMK2D	ENSG00000145349.18	ENST00000683023.1:ENST00000296402.9:ENST00000511664.6:ENST00000394524.7:ENST00000342666.9:ENST00000514328.5:ENST00000515496.5:ENST00000394522.7:ENST00000505990.5:ENST00000379773.6:ENST00000508738.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	74	2	4.61749	5.44741	6.27733	0.061376	3.30957e-4	0.158506	0.00650092
chr17	6691140	6691240	6845980	0	-	0.48	(0.45,0.485]	chr17	693295	2	SS3_PROX	SS3_PROX:INTRON	SLC13A5	ENSG00000141485.17	ENST00000433363.7:ENST00000293800.10:ENST00000381074.8:ENST00000573648.5:ENST00000572727.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	227	2	3.22324	5.44692	7.6706	0.00604452	5.27905e-4	0.048565	0.0133888
chr4	109757462	109757562	2307827	0	-	0.45	(0.419,0.45]	chr4	232048	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000285330:CFI	ENSG00000285330.1:ENSG00000205403.15	ENST00000645635.1:ENST00000695844.1:ENST00000695845.1:ENST00000504853.3:ENST00000394634.7:ENST00000394635.8:ENST00000512148.5:ENST00000695846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	68	2	5.36395	5.44677	5.52959	0.0407485	0.00484244	0.135868	0.0418176
chr16	57377656	57377754	6466041	0	+	0.561224	(0.523,0.58]	chr16	641366	8	UTR5	UTR5:EXON_MRNA:INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1:ENST00000565912.1	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.1205	5.4466850000000004	5.77287	0.0416463	0.00160162	0.136301	0.0197827
chr6	100560664	100560764	3210526	0	-	0.42	(0.419,0.45]	chr6	311822	199	INTRON	INTRON	ASCC3	ENSG00000112249.14	ENST00000369162.7	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	4.81671	5.44633	6.07595	0.08258	0.00132452	0.179396	0.0173138
chr10	79112321	79112420	4532478	0	+	0.555556	(0.523,0.58]	chr10	432420	427	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.20104	5.446305	5.69157	0.0172851	0.00648051	0.0897247	0.0503748
chr4	3378888	3378988	2005227	0	+	0.38	(0.36,0.39]	chr4	204672	4	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000513784.7:ENST00000338806.4:ENST00000506998.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	68	2	5.36211	5.44599	5.52987	0.0287883	0.00643924	0.115991	0.0503748
chr5	104198589	104198689	2496775	0	+	0.44	(0.419,0.45]	chr5	248658	933	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	0	72	2	5.04004	5.44562	5.8512	0.0201381	0.0137308	0.0973365	0.0814223
chr3	37863177	37863277	1443275	0	+	0.6	(0.58,1]	chr3	153956	5	INTRON	INTRON	CTDSPL	ENSG00000144677.15	ENST00000273179.10:ENST00000443503.6:ENST00000435525.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	134	2	4.49148	5.445565	6.39965	0.00241374	3.89116e-4	0.0309229	0.00732219
chr3	66499989	66500089	1817114	0	-	0.61	(0.58,1]	chr3	187448	4	SS5_PROX	SS5_PROX:INTRON	LRIG1	ENSG00000144749.14	ENST00000273261.8:ENST00000383703.3:ENST00000498287.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	181	2	3.84938	5.445495	7.04161	7.06615e-4	5.99793e-4	0.0143535	0.0111608
chr12	53190074	53190173	5235228	0	+	0.59596	(0.58,1]	chr12	508673	26	UTR3	UTR3:EXON_MRNA	ZNF740	ENSG00000139651.11	ENST00000416904.5	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.0607	5.44517	5.82964	0.029633	7.58111e-4	0.116079	0.0117078
chr20	36312805	36312905	7469115	0	+	0.59	(0.58,1]	chr20	777805	59	INTRON	INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.0607	5.44517	5.82964	0.029633	7.58111e-4	0.116079	0.0117078
chr5	176591886	176591984	2596984	0	+	0.520408	(0.485,0.523]	chr5	257776	3	SS5_PROX	SS5_PROX:INTRON	CDHR2	ENSG00000074276.11	ENST00000510636.5:ENST00000261944.10:ENST00000506348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	67	2	5.12092	5.445105	5.76929	0.0414411	0.00167976	0.136301	0.0203806
chr12	132742081	132742176	5539921	0	-	0.336842	(0.33,0.36]	chr12	546701	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ANKLE2	ENSG00000176915.15	ENST00000357997.10:ENST00000539605.5:ENST00000439231.6:ENST00000538591.5:ENST00000535036.5:ENST00000545623.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	67	2	5.34082	5.444955	5.54909	0.0338211	0.00379428	0.124319	0.0355124
chr17	80021903	80022003	6982135	0	-	0.35	(0.33,0.36]	chr17	713081	79	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.34082	5.444955	5.54909	0.0338211	0.00379428	0.124319	0.0355124
chr17	35049126	35049225	6887795	0	-	0.454545	(0.45,0.485]	chr17	699061	69	INTRON	INTRON	RFFL	ENSG00000092871.17	ENST00000315249.11:ENST00000394597.7:ENST00000584655.5:ENST00000447669.6:ENST00000584541.1:ENST00000414419.6:ENST00000581265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	67	2	5.38553	5.444875	5.50422	0.0257993	0.00490471	0.109555	0.0422077
chr15	40539755	40539855	6235366	0	-	0.52	(0.485,0.523]	chr15	613069	4	SS3_PROX	SS3_PROX:INTRON	CCDC32	ENSG00000128891.16	ENST00000560305.5:ENST00000559153.5:ENST00000561011.5:ENST00000559291.5:ENST00000559911.5:ENST00000558113.5:ENST00000625629.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	68	2	5.19749	5.444745	5.692	0.0171772	0.00672953	0.0895975	0.0519464
chr22	20125014	20125112	7686893	0	+	0.5	(0.485,0.523]	chr22	804214	10	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000331821.7:ENST00000411892.5:ENST00000423859.5:ENST00000418705.2:ENST00000448394.2:ENST00000486575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	68	2	5.19749	5.444745	5.692	0.0171772	0.00672953	0.0895975	0.0519464
chr22	35878071	35878171	7804319	0	-	0.52	(0.485,0.523]	chr22	817785	376	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000359369.8:ENST00000695807.1:ENST00000408983.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	68	2	5.19749	5.444745	5.692	0.0171772	0.00672953	0.0895975	0.0519464
chr16	14932170	14932270	6402963	0	+	0.6	(0.58,1]	chr16	632648	2	SS3_PROX	SS3_PROX:INTRON	PKD1P3:NPIPA1	ENSG00000183458.14:ENSG00000183426.17	ENST00000534164.6:ENST00000472413.5:ENST00000541836.5	protein_coding	processed_transcript	protein_coding:transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	72	2	4.62403	5.444735	6.26544	0.0578275	2.06156e-4	0.154343	0.00461335
chr17	77486923	77487023	6805251	0	+	0.61	(0.58,1]	chr17	686822	1	SS3_PROX	SS3_PROX:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	64	2	5.41094	5.4446650000000005	5.47839	0.0145198	0.00240622	0.0823104	0.0261006
chr19	18840080	18840180	7224775	0	+	0.66	(0.58,1]	chr19	739340	64	INTRON	INTRON	UPF1	ENSG00000005007.13	ENST00000262803.10:ENST00000599848.5:ENST00000601981.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	5.41094	5.4446650000000005	5.47839	0.0145198	0.00240622	0.0823104	0.0261006
chr12	62771145	62771245	5445754	0	-	0.35	(0.33,0.36]	chr12	535900	332	INTRON	INTRON	PPM1H	ENSG00000111110.12	ENST00000228705.7:ENST00000551519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	68	2	5.11012	5.4445250000000005	5.77893	0.04702	0.00218403	0.143232	0.0244273
chr20	10710969	10711069	7437914	0	+	0.43	(0.419,0.45]	chr20	774077	130	INTRON	INTRON	LINC01752	ENSG00000224961.3	ENST00000417299.2	lncRNA	lncRNA	lncRNA	lncRNA	0	68	2	5.27868	5.444495	5.61031	0.0457732	0.004032	0.142336	0.0371291
chr4	146500454	146500554	2336430	0	-	0.42	(0.419,0.45]	chr4	234371	218	INTRON	INTRON	SLC10A7	ENSG00000120519.16	ENST00000432059.6:ENST00000335472.12:ENST00000693222.1:ENST00000507030.5:ENST00000511315.2:ENST00000507560.5:ENST00000685433.1:ENST00000394059.8:ENST00000511374.5:ENST00000513583.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	68	2	5.27868	5.444495	5.61031	0.0457732	0.004032	0.142336	0.0371291
chr7	2377375	2377475	3308496	0	+	0.45	(0.419,0.45]	chr7	320688	3	SS5_PROX	SS5_PROX:INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000475415.5:ENST00000468611.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	68	2	5.27868	5.444495	5.61031	0.0457732	0.004032	0.142336	0.0371291
chr1	14952235	14952335	43930	0	+	0.52	(0.485,0.523]	chr1	4388	57	INTRON	INTRON	KAZN	ENSG00000189337.17	ENST00000636203.1:ENST00000376030.7:ENST00000491547.1:ENST00000503743.5:ENST00000361144.9:ENST00000400798.6:ENST00000376028.8:ENST00000400797.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	67	2	5.30159	5.4444099999999995	5.58723	0.0203514	0.00529578	0.0979211	0.044517
chr17	82718473	82718571	6818063	0	+	0.612245	(0.58,1]	chr17	689123	1	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	65	2	5.25731	5.4442450000000004	5.63118	0.0109983	0.00358178	0.0708586	0.0342681
chr19	36215296	36215396	7248151	0	+	0.58	(0.523,0.58]	chr19	742978	1	SS5_PROX	SS5_PROX:INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	145	2	4.57635	5.44403	6.31171	0.00594629	4.64368e-4	0.0506158	0.00826853
chr16	85375142	85375242	6516822	0	+	0.62	(0.58,1]	chr16	646391	158	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.02314	5.444025	5.86491	0.00707578	0.00638322	0.0558168	0.0501889
chr2	138555035	138555134	904424	0	+	0.494949	(0.485,0.523]	chr2	101959	1	INTRON	INTRON	SPOPL	ENSG00000144228.9	ENST00000280098.9:ENST00000420679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	415	2	5.20424	5.443995	5.68375	3.30814e-4	7.28824e-5	0.010377	0.00216451
chr2	232888607	232888703	1383717	0	-	0.572917	(0.523,0.58]	chr2	147929	1	INTRON	INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000424488.5:ENST00000461944.1:ENST00000416114.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	66	2	5.35124	5.443944999999999	5.53665	0.0295772	0.00291382	0.116079	0.0298557
chr5	80987916	80988016	2468513	0	+	0.35	(0.33,0.36]	chr5	246550	265	INTRON	INTRON	RASGRF2	ENSG00000113319.13	ENST00000265080.9:ENST00000503795.1:ENST00000638442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	68	2	5.27557	5.44384	5.61211	0.022456	0.00707628	0.102751	0.0540197
chr3	67487500	67487600	1818405	0	-	0.36	(0.33,0.36]	chr3	187477	781	INTRON	INTRON	SUCLG2	ENSG00000172340.15	ENST00000493112.5:ENST00000307227.10:ENST00000460567.5:ENST00000492795.1	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.29754	5.443785	5.59003	0.0360263	0.00344516	0.127853	0.0333853
chr11	70813267	70813367	5062416	0	-	0.62	(0.58,1]	chr11	492713	57	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	67	2	5.08534	5.44362	5.8019	0.007984	0.00549379	0.0596361	0.0454065
chr19	18468891	18468990	7347880	0	-	0.626263	(0.58,1]	chr19	761486	26	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	67	2	5.08534	5.44362	5.8019	0.007984	0.00549379	0.0596361	0.0454065
chr16	30990542	30990641	6579786	0	-	0.575758	(0.523,0.58]	chr16	657721	14	UTR3	UTR3:EXON_MRNA	STX1B	ENSG00000099365.11	ENST00000215095.11	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.30795	5.443375	5.5788	0.0315825	0.00262418	0.120781	0.0278348
chr9	133852993	133853093	4428928	0	-	0.55	(0.523,0.58]	chr9	423304	183	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.30795	5.443375	5.5788	0.0315825	0.00262418	0.120781	0.0278348
chr2	101125149	101125249	1239835	0	-	0.57	(0.523,0.58]	chr2	133786	153	INTRON	INTRON	TBC1D8	ENSG00000204634.13	ENST00000409318.2:ENST00000376840.8:ENST00000463469.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	5.39327	5.443245	5.49322	0.0277354	0.00324246	0.112851	0.0319521
chr14	19121854	19121954	5754560	0	+	0.32	(0.29,0.33]	chr14	564251	67	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000644980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	185	2	4.51029	5.443185	6.37608	0.00325931	3.48543e-4	0.0365669	0.00674746
chr6	519780	519880	3077338	0	-	0.66	(0.58,1]	chr6	299297	197	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	1	134	2	4.5743	5.443115000000001	6.31193	0.00289626	3.00208e-4	0.03418	0.00607383
chr6	129626352	129626452	3259075	0	-	0.33	(0.29,0.33]	chr6	315400	71	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.35847	5.443095	5.52772	0.0269557	0.00324812	0.112113	0.0319647
chr2	128183889	128183989	890572	0	+	0.45	(0.419,0.45]	chr2	100813	1	SS5_PROX	SS5_PROX:INTRON	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000376723.7:ENST00000418197.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	69	2	5.09133	5.442830000000001	5.79433	0.0586308	0.00262626	0.155565	0.0278348
chr4	152453374	152453474	2354825	0	-	0.44	(0.419,0.45]	chr4	235296	12	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.09133	5.442830000000001	5.79433	0.0586308	0.00262626	0.155565	0.0278348
chr9	132072050	132072150	4422749	0	-	0.43	(0.419,0.45]	chr9	422092	395	INTRON	INTRON	MED27	ENSG00000160563.14	ENST00000651950.1:ENST00000357028.6:ENST00000292035.10:ENST00000651555.1:ENST00000650776.1:ENST00000444872.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	69	2	5.09133	5.442830000000001	5.79433	0.0586308	0.00262626	0.155565	0.0278348
chr6	155307092	155307192	3298102	0	-	0.47	(0.45,0.485]	chr6	319174	37	INTRON	INTRON	TFB1M	ENSG00000029639.11	ENST00000367166.5:ENST00000470239.1:ENST00000475849.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	215	2	3.38568	5.44256	7.49944	0.00400963	7.40531e-4	0.0371192	0.0160724
chr15	80705312	80705412	6163114	0	+	0.41	(0.39,0.419]	chr15	606617	2	SS5_PROX	SS5_PROX:INTRON	ABHD17C	ENSG00000136379.12	ENST00000560609.1:ENST00000258884.5:ENST00000558464.1:ENST00000559506.5:ENST00000560126.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	69	2	5.04815	5.44253	5.83691	0.0572698	0.00215135	0.154343	0.0241566
chr19	38178045	38178144	7257006	0	+	0.50505	(0.485,0.523]	chr19	743769	40	INTRON	INTRON	SIPA1L3	ENSG00000105738.11	ENST00000222345.11:ENST00000595495.1:ENST00000601054.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	66	2	5.35167	5.442375	5.53308	0.0294163	0.00304306	0.116079	0.0306636
chr2	235512233	235512333	1062718	0	+	0.4	(0.39,0.419]	chr2	115651	170	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	248	2	3.50801	5.44232	7.37663	0.00190652	0.00129529	0.022296	0.0219863
chr4	139084266	139084343	2325757	0	-	0.701299	(0.58,1]	chr4	233685	2	UTR5	UTR5:EXON_MRNA:INTRON	ELF2	ENSG00000109381.21	ENST00000394235.6:ENST00000686138.1:ENST00000379550.5:ENST00000358635.7:ENST00000379549.7:ENST00000510408.5:ENST00000514606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	72	2	4.81862	5.442305	6.06599	0.0102696	0.00477081	0.0678072	0.0450109
chr11	70585429	70585529	5060127	0	-	0.43	(0.419,0.45]	chr11	492663	821	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	258	2	3.48738	5.4419	7.39642	0.01426	3.70422e-5	0.0818174	0.00131524
chr22	33545418	33545518	7799106	0	-	0.52	(0.485,0.523]	chr22	817588	1070	INTRON	INTRON	LARGE1	ENSG00000133424.22	ENST00000608642.6:ENST00000609799.6:ENST00000610186.6:ENST00000397394.8:ENST00000413114.6:ENST00000676070.1:ENST00000674543.1:ENST00000676370.1:ENST00000354992.7:ENST00000402320.6:ENST00000675416.1:ENST00000676132.1:ENST00000676126.1:ENST00000675382.1:ENST00000676031.1:ENST00000674668.1:ENST00000674999.1:ENST00000674708.1:ENST00000674780.1:ENST00000674789.1:ENST00000675277.1:ENST00000421768.2:ENST00000434071.6:ENST00000432776.6:ENST00000423375.2:ENST00000430220.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	66	2	5.30837	5.441800000000001	5.57523	0.0314138	0.00274261	0.12069	0.028553
chr19	41377146	41377206	7263507	0	+	0.666667	(0.58,1]	chr19	745096	1	SS5_PROX	SS5_PROX:INTRON	TMEM91	ENSG00000142046.15	ENST00000539627.5:ENST00000604123.5:ENST00000413014.6:ENST00000392002.7:ENST00000436170.6:ENST00000447302.6:ENST00000544232.5:ENST00000542945.5:ENST00000537354.5	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	4.95814	5.4417100000000005	5.92528	0.0074469	0.0062948	0.0553519	0.0523832
chr1	206418872	206418972	325830	0	+	0.51	(0.485,0.523]	chr1	36615	1	SS3_PROX	SS3_PROX:INTRON	SRGAP2	ENSG00000266028.8	ENST00000573034.8:ENST00000605610.5:ENST00000624873.3:ENST00000605476.5	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.39369	5.441675	5.48966	0.0275819	0.0033837199999999998	0.112782	0.0328791
chr1	17589078	17589178	54070	0	+	0.56	(0.523,0.58]	chr1	5465	2	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5	protein_coding	protein_coding	protein_coding	protein_coding	1	145	2	4.2576599999999996	5.44163	6.6256	0.00333843	0.00114788	0.0368376	0.0156784
chr17	42207457	42207557	6903159	0	-	0.43	(0.419,0.45]	chr17	702130	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	STAT5B	ENSG00000173757.10	ENST00000293328.8	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	4.91849	5.44162	5.96475	0.0174488	0.0169309	0.0928044	0.088829
chr3	129454443	129454537	1566434	0	+	0.425532	(0.419,0.45]	chr3	165748	10	INTRON	INTRON	IFT122	ENSG00000163913.14	ENST00000693654.1:ENST00000687461.1:ENST00000440957.7:ENST00000688129.1:ENST00000689313.1:ENST00000689801.1:ENST00000691583.1:ENST00000347300.6:ENST00000685282.1:ENST00000692242.1:ENST00000687377.1:ENST00000693489.1:ENST00000687645.1:ENST00000689643.1:ENST00000688970.1:ENST00000512157.6:ENST00000692228.1:ENST00000693114.1:ENST00000690862.1:ENST00000689332.1:ENST00000685921.1:ENST00000691770.1:ENST00000692985.1:ENST00000685447.1:ENST00000693162.1:ENST00000692391.1:ENST00000686531.1:ENST00000693129.1:ENST00000689796.1:ENST00000685939.1:ENST00000686830.1:ENST00000687791.1:ENST00000686473.1:ENST00000690723.1:ENST00000689871.1:ENST00000688504.1:ENST00000691964.1:ENST00000686375.1:ENST00000691733.1:ENST00000691705.1:ENST00000690209.1:ENST00000687864.1:ENST00000689819.1:ENST00000296266.7:ENST00000689492.1:ENST00000687398.1:ENST00000690663.1:ENST00000693588.1:ENST00000690677.1:ENST00000688664.1:ENST00000431818.8:ENST00000507564.5:ENST00000693233.1:ENST00000504021.6:ENST00000348417.7:ENST00000692901.1:ENST00000515783.6:ENST00000688020.1:ENST00000512220.5:ENST00000349441.6:ENST00000689005.1:ENST00000691641.1:ENST00000692321.1:ENST00000685087.1:ENST00000692728.1:ENST00000691360.1:ENST00000685189.1:ENST00000687766.1:ENST00000687845.1:ENST00000692508.1:ENST00000506507.5:ENST00000509815.1:ENST00000509195.5:ENST00000502304.5:ENST00000502456.5:ENST00000510524.5:ENST00000690617.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	74	2	4.91849	5.44162	5.96475	0.0174488	0.0169309	0.0928044	0.088829
chr10	73706864	73706963	4716774	0	-	0.434343	(0.419,0.45]	chr10	449734	14	INTRON	INTRON	BMS1P4:ENSG00000272140	ENSG00000271816.1:ENSG00000272140.2	ENST00000580790.1:ENST00000415917.2:ENST00000580623.1	lncRNA	lncRNA	lncRNA	lncRNA	0	68	2	5.23407	5.441555	5.64904	0.0486006	0.00368884	0.145074	0.0348088
chr6	154468638	154468738	3297129	0	-	0.44	(0.419,0.45]	chr6	319119	180	INTRON	INTRON	CNKSR3	ENSG00000153721.19	ENST00000607772.6:ENST00000479339.5	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.23407	5.441555	5.64904	0.0486006	0.00368884	0.145074	0.0348088
chr10	132565948	132566048	4617120	0	+	0.57	(0.523,0.58]	chr10	441139	274	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.26332	5.44154	5.61976	0.0337698	0.00236826	0.124319	0.0259199
chr2	232888703	232888799	1383718	0	-	0.552083	(0.523,0.58]	chr2	147929	2	INTRON	INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000424488.5:ENST00000461944.1:ENST00000416114.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	66	2	5.26332	5.44154	5.61976	0.0337698	0.00236826	0.124319	0.0259199
chr7	139682068	139682168	3722966	0	-	0.54	(0.523,0.58]	chr7	357498	500	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.26332	5.44154	5.61976	0.0337698	0.00236826	0.124319	0.0259199
chr13	50043234	50043334	5714070	0	-	0.35	(0.33,0.36]	chr13	560609	112	INTRON	INTRON	DLEU2	ENSG00000231607.14	ENST00000621282.4:ENST00000688690.1:ENST00000668305.1:ENST00000425586.5:ENST00000686946.1	lncRNA	lncRNA	lncRNA	lncRNA	0	67	2	5.25292	5.44138	5.62984	0.0384256	0.00313405	0.131324	0.0312116
chr11	70504830	70504930	5059321	0	-	0.58	(0.523,0.58]	chr11	492663	15	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	66	2	5.43411	5.441280000000001	5.44845	0.026041	0.00361636	0.109673	0.0342681
chr7	157353648	157353748	3521876	0	+	0.55	(0.523,0.58]	chr7	340131	132	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000439402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	66	2	5.43411	5.441280000000001	5.44845	0.026041	0.00361636	0.109673	0.0342681
chr9	131164225	131164306	4256674	0	+	0.432099	(0.419,0.45]	chr9	405498	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000489260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	68	2	5.39934	5.4412199999999995	5.4831	0.0345118	0.00646489	0.126025	0.0503748
chr3	12967286	12967386	1688802	0	-	0.78	(0.58,1]	chr3	176522	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	140	2	4.04556	5.441205	6.83685	0.00148416	9.44859e-4	0.0186585	0.0183873
chr3	188584482	188584582	1656115	0	+	0.34	(0.33,0.36]	chr3	173805	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000494233.5:ENST00000462758.1:ENST00000471917.1:ENST00000487347.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	67	2	5.4188	5.44109	5.46338	0.0281891	0.00513015	0.114124	0.0435186
chr2	235728478	235728578	1064889	0	+	0.53	(0.523,0.58]	chr2	115681	97	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	74	2	4.83424	5.44108	6.04792	0.0144272	0.00948306	0.0833845	0.0656057
chr7	34449761	34449861	3570118	0	-	0.42	(0.419,0.45]	chr7	344495	317	INTRON	INTRON	NPSR1-AS1	ENSG00000197085.11	ENST00000419766.5:ENST00000539747.5	lncRNA	lncRNA	lncRNA	lncRNA	2	221	2	3.41349	5.440925	7.46836	0.00450613	0.00132398	0.040048	0.0222129
chr4	143338759	143338859	2136959	0	+	0.31	(0.29,0.33]	chr4	217046	11	INTRON	INTRON	GAB1	ENSG00000109458.9	ENST00000262995.8:ENST00000262994.9:ENST00000514639.5	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.43954	5.440445	5.44135	0.0236557	0.00401582	0.105002	0.0371286
chr3	71575440	71575538	1831212	0	-	0.489796	(0.485,0.523]	chr3	188274	11	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000650068.2:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1:ENST00000647649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	380	2	5.10579	5.4403299999999994	5.77487	0.00108902	1.19652e-5	0.0198697	5.83989e-4
chr10	131916890	131916990	4616185	0	+	0.55	(0.523,0.58]	chr10	441069	39	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	70	2	5.02927	5.44007	5.85087	0.0132767	0.0095202	0.0787251	0.0650078
chr3	78960721	78960821	1837113	0	-	0.54	(0.523,0.58]	chr3	188611	214	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	5.02927	5.44007	5.85087	0.0132767	0.0095202	0.0787251	0.0650078
chr17	57440290	57440389	6761613	0	+	0.434343	(0.419,0.45]	chr17	682129	78	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	154	2	4.30181	5.43997	6.57813	0.00629696	0.00146956	0.0523832	0.0185589
chr11	846769	846869	4786132	0	+	0.62	(0.58,1]	chr11	458423	2	SS3_PROX	SS3_PROX:INTRON	TSPAN4	ENSG00000214063.12	ENST00000397411.6:ENST00000397396.5:ENST00000397397.7:ENST00000397408.5:ENST00000530404.5:ENST00000525334.5:ENST00000397406.5:ENST00000409543.6:ENST00000525201.5:ENST00000397404.5	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.36153	5.439830000000001	5.51813	0.013519	0.00273899	0.0792526	0.028553
chr12	132529583	132529682	5352911	0	+	0.666667	(0.58,1]	chr12	523670	12	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.36153	5.439830000000001	5.51813	0.013519	0.00273899	0.0792526	0.028553
chr19	58326622	58326722	7412931	0	-	0.66	(0.58,1]	chr19	772006	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000283103	ENSG00000283103.4	ENST00000664481.1:ENST00000634676.2:ENST00000659246.1:ENST00000671228.1:ENST00000658331.1:ENST00000669883.1:ENST00000651375.3:ENST00000669440.2:ENST00000666049.1:ENST00000687313.1	lncRNA	lncRNA	lncRNA	lncRNA	0	64	2	5.36153	5.439830000000001	5.51813	0.013519	0.00273899	0.0792526	0.028553
chr7	1016824	1016923	3526391	0	-	0.676768	(0.58,1]	chr7	340572	63	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	5.36153	5.439830000000001	5.51813	0.013519	0.00273899	0.0792526	0.028553
chr15	83052054	83052152	6342513	0	-	0.520408	(0.485,0.523]	chr15	625236	15	INTRON	INTRON	BTBD1	ENSG00000064726.10	ENST00000261721.9:ENST00000379403.2:ENST00000559652.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	184	2	4.42843	5.4397400000000005	6.45105	0.00414448	2.61322e-4	0.0416647	0.00551565
chr5	81274587	81274687	2713974	0	-	0.43	(0.419,0.45]	chr5	267197	234	INTRON	INTRON	CKMT2-AS1	ENSG00000247572.9	ENST00000663674.1:ENST00000503483.6:ENST00000511495.1:ENST00000512287.1:ENST00000502041.3:ENST00000690798.1:ENST00000670957.1:ENST00000660242.1:ENST00000500148.6:ENST00000669977.1:ENST00000656836.1:ENST00000501927.2:ENST00000505295.1	lncRNA	lncRNA	lncRNA	lncRNA	1	155	2	4.53313	5.43973	6.34633	0.00923958	8.02103e-4	0.0644666	0.0121806
chr1	48228151	48228250	120981	0	+	0.474747	(0.45,0.485]	chr1	15165	30	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	148	2	4.57535	5.4393650000000004	6.30338	0.00692617	5.36627e-4	0.0553898	0.0091711
chr5	31436644	31436738	2629164	0	-	0.542553	(0.523,0.58]	chr5	260850	4	INTRON	INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000504133.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	67	2	5.06957	5.43915	5.80873	0.0448011	0.00145893	0.140478	0.0184991
chr15	67102323	67102423	6139441	0	+	0.39	(0.36,0.39]	chr15	603944	29	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1:ENST00000559092.1:ENST00000560175.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	184	2	3.89235	5.43904	6.98573	0.0135325	1.01347e-4	0.0793001	0.00276585
chr10	103810850	103810950	4758213	0	-	0.54	(0.523,0.58]	chr10	454819	91	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	4.96714	5.438555	5.90997	0.012016	0.0108948	0.0743424	0.0706366
chr1	221741780	221741880	668150	0	-	0.51	(0.485,0.523]	chr1	78372	4	SS5_PROX	SS5_PROX:INTRON	DUSP10	ENSG00000143507.18	ENST00000366899.4:ENST00000477026.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	70	2	5.02573	5.438515000000001	5.8513	0.0131886	0.00985879	0.0785398	0.0664239
chr20	61971486	61971585	7582829	0	-	0.525253	(0.523,0.58]	chr20	792262	173	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000474089.5	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.21727	5.43843	5.65959	0.0361597	0.0021416	0.127853	0.0240825
chr16	85452009	85452109	6517591	0	+	0.58	(0.523,0.58]	chr16	646391	927	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.25403	5.438305	5.62258	0.0193313	0.00573579	0.0954446	0.0467736
chr2	89555000	89555100	1216642	0	-	0.53	(0.523,0.58]	chr2	131064	4	SS3_PROX	SS3_PROX:INTRON	ENSG00000283196	ENSG00000283196.2	ENST00000636531.1:ENST00000635968.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	67	2	5.25403	5.438305	5.62258	0.0193313	0.00573579	0.0954446	0.0467736
chr22	36329547	36329647	7806814	0	-	0.54	(0.523,0.58]	chr22	818135	7	INTRON	INTRON	MYH9	ENSG00000100345.23	ENST00000216181.11:ENST00000685801.1:ENST00000692930.1:ENST00000685187.1:ENST00000691687.1:ENST00000685191.1:ENST00000688137.1:ENST00000401701.1:ENST00000691296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	67	2	5.25403	5.438305	5.62258	0.0193313	0.00573579	0.0954446	0.0467736
chr1	31579813	31579913	81045	0	+	0.58	(0.523,0.58]	chr1	9288	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LINC01226:TINAGL1	ENSG00000284543.1:ENSG00000142910.16	ENST00000639839.1:ENST00000640226.1:ENST00000457433.6:ENST00000271064.12:ENST00000461030.5:ENST00000478398.5:ENST00000481165.5:ENST00000537531.2:ENST00000468635.5:ENST00000498429.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	80	2	4.60868	5.437939999999999	6.2672	0.0226775	0.00644151	0.108193	0.0530091
chr13	50382691	50382791	5596432	0	+	0.52	(0.485,0.523]	chr13	551582	435	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000485007.5:ENST00000475913.5:ENST00000484529.5:ENST00000473075.3:ENST00000483444.5:ENST00000469127.5:ENST00000463357.5:ENST00000489542.6	lncRNA	lncRNA	lncRNA	lncRNA	0	69	2	5.08528	5.437475	5.78967	0.0146211	0.0086528	0.0826064	0.0612699
chr9	71755277	71755377	4314662	0	-	0.51	(0.485,0.523]	chr9	412548	45	INTRON	INTRON	CEMIP2	ENSG00000135048.14	ENST00000377044.9:ENST00000377066.9:ENST00000542935.5:ENST00000543165.1:ENST00000545719.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	147	2	4.13042	5.437435	6.74445	0.00264613	0.00166514	0.032596	0.0203119
chr11	90632904	90633004	4917772	0	+	0.36	(0.33,0.36]	chr11	474339	296	INTRON	INTRON	DISC1FP1	ENSG00000261645.7	ENST00000649150.1:ENST00000562245.5:ENST00000561596.5:ENST00000562678.5:ENST00000563681.1:ENST00000670926.1	lncRNA	lncRNA	lncRNA	lncRNA	0	67	2	5.37262	5.437325	5.50203	0.0265895	0.00569729	0.111433	0.046716
chr12	57342481	57342581	5440910	0	-	0.55	(0.523,0.58]	chr12	535502	11	INTRON	INTRON	R3HDM2	ENSG00000179912.21	ENST00000402412.6:ENST00000347140.7:ENST00000634871.1:ENST00000448732.1	protein_coding	protein_coding	protein_coding	protein_coding	1	151	2	3.96183	5.437139999999999	6.91245	0.00255427	0.00193417	0.0275437	0.0273114
chr14	89247030	89247130	6026568	0	-	0.51	(0.485,0.523]	chr14	591432	158	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	509	2	5.2617	5.437135	5.61257	3.83863e-4	1.38858e-5	0.0112494	6.46001e-4
chr9	123885317	123885417	4401447	0	-	0.43	(0.419,0.45]	chr9	419733	59	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.35317	5.43695	5.52073	0.0327198	0.00714797	0.122543	0.0541241
chr19	941920	942020	7185265	0	+	0.6	(0.58,1]	chr19	730741	88	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	743	2	5.15271	5.4369250000000005	5.72114	1.00677e-4	1.15568e-6	0.00560072	1.14644e-4
chr1	29322773	29322870	79271	0	+	0.505155	(0.485,0.523]	chr1	9059	16	INTRON	INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2:ENST00000493601.5:ENST00000465525.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	66	2	5.21769	5.43685	5.65601	0.0359739	0.00224147	0.127853	0.024843
chr11	71067958	71068058	5064973	0	-	0.51	(0.485,0.523]	chr11	492754	110	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000618363.4:ENST00000458632.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	66	2	5.21769	5.43685	5.65601	0.0359739	0.00224147	0.127853	0.024843
chr2	135255243	135255343	1273654	0	-	0.49	(0.485,0.523]	chr2	137387	165	INTRON	INTRON	ZRANB3	ENSG00000121988.18	ENST00000264159.11:ENST00000401392.5:ENST00000536680.5:ENST00000403017.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	66	2	5.21769	5.43685	5.65601	0.0359739	0.00224147	0.127853	0.024843
chr12	125094903	125095003	5349242	0	+	0.6	(0.58,1]	chr12	523142	18	INTRON	INTRON	AACS	ENSG00000081760.17	ENST00000418937.6:ENST00000316519.11:ENST00000537477.5:ENST00000537564.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	70	2	4.89007	5.436645	5.98322	0.00872525	0.00562007	0.0612699	0.0493906
chr6	3144867	3144966	2828587	0	+	0.59596	(0.58,1]	chr6	277604	40	INTRON	INTRON	BPHL	ENSG00000137274.13	ENST00000434640.5:ENST00000430655.6:ENST00000424847.6:ENST00000433912.5:ENST00000380379.10:ENST00000490918.5:ENST00000380375.4:ENST00000488487.2:ENST00000423798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	70	2	4.89007	5.436645	5.98322	0.00872525	0.00562007	0.0612699	0.0493906
chr1	144425102	144425189	574049	0	-	0.494253	(0.485,0.523]	chr1	65893	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF15	ENSG00000266338.7	ENST00000581897.7:ENST00000488031.6:ENST00000577412.6:ENST00000614785.5:ENST00000584793.7	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.39869	5.43647	5.47425	0.0243396	0.00421243	0.106588	0.0380601
chr16	89325147	89325247	6660066	0	-	0.52	(0.485,0.523]	chr16	666683	49	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	66	2	5.39869	5.43647	5.47425	0.0243396	0.00421243	0.106588	0.0380601
chr6	41699284	41699384	3132385	0	-	0.53	(0.523,0.58]	chr6	305477	77	INTRON	INTRON	TFEB	ENSG00000112561.19	ENST00000358871.6:ENST00000373033.6:ENST00000230323.8:ENST00000677531.1:ENST00000403298.9:ENST00000420312.6:ENST00000424495.2:ENST00000678831.1:ENST00000419396.6:ENST00000416140.6:ENST00000419574.6:ENST00000445214.2:ENST00000678871.1:ENST00000394283.5:ENST00000679237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	72	2	4.71922	5.436445	6.15367	0.0721601	5.76607e-4	0.168159	0.00963379
chr20	19918318	19918418	7446723	0	+	0.35	(0.33,0.36]	chr20	774816	225	INTRON	INTRON	RIN2	ENSG00000132669.14	ENST00000255006.12:ENST00000648440.1:ENST00000459721.5:ENST00000467569.5:ENST00000488077.1:ENST00000440354.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	77	2	4.73368	5.43633	6.13898	0.0216127	0.00953039	0.105648	0.0658012
chr17	344617	344716	6821735	0	-	0.414141	(0.39,0.419]	chr17	689629	33	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000577079.5:ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	4.92679	5.435905	5.94502	0.0160946	0.0155393	0.0896852	0.0849828
chr19	46978891	46978991	7275362	0	+	0.6	(0.58,1]	chr19	747275	411	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	135	2	4.23567	5.43521	6.63475	0.00146621	8.49275e-4	0.023492	0.0126615
chr3	48487149	48487249	1767097	0	-	0.36	(0.33,0.36]	chr3	182363	75	INTRON	INTRON	SHISA5	ENSG00000164054.17	ENST00000619810.4:ENST00000444115.5:ENST00000296444.7:ENST00000442747.5:ENST00000417962.5:ENST00000443308.6:ENST00000424965.5:ENST00000417841.5:ENST00000415268.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	71	2	4.99985	5.435035	5.87022	0.0148989	0.0127452	0.0834354	0.0773423
chr22	32990283	32990383	7794567	0	-	0.47	(0.45,0.485]	chr22	817470	92	INTRON	INTRON	SYN3	ENSG00000185666.15	ENST00000358763.7:ENST00000441821.5:ENST00000412575.1	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.00859	5.434825	5.86106	0.052901	0.00153611	0.14912	0.0191553
chr19	20116980	20117080	7228783	0	+	0.37	(0.36,0.39]	chr19	740012	95	INTRON	INTRON	ZNF90	ENSG00000213988.11	ENST00000474284.1:ENST00000469078.5:ENST00000418063.3:ENST00000473524.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	67	2	5.37307	5.4347449999999995	5.49642	0.0361409	0.00476539	0.127853	0.0414441
chr9	41050376	41050476	4153700	0	+	0.34	(0.33,0.36]	chr9	395154	146	INTRON	INTRON	FRG1HP	ENSG00000276291.6	ENST00000688017.1:ENST00000692434.1:ENST00000687775.1:ENST00000618340.5:ENST00000693485.1:ENST00000686736.1:ENST00000689683.1:ENST00000617940.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	70	2	5.05937	5.43463	5.80989	0.0164265	0.0112642	0.0877406	0.071709
chr2	240000587	240000687	1393837	0	-	0.54	(0.523,0.58]	chr2	148866	2	SS3_PROX	SS3_PROX:INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2:ENST00000679332.1:ENST00000678737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	149	2	4.01555	5.4345	6.85345	0.00221587	0.00216679	0.0292299	0.0247044
chr3	105847636	105847735	1862762	0	-	0.464646	(0.45,0.485]	chr3	189853	78	INTRON	INTRON	CBLB	ENSG00000114423.23	ENST00000645759.1:ENST00000394030.8:ENST00000646499.1:ENST00000645425.1:ENST00000646825.1:ENST00000643322.1:ENST00000403724.5:ENST00000405772.5:ENST00000447441.6:ENST00000643403.1:ENST00000438603.6:ENST00000443752.2:ENST00000643192.1:ENST00000642907.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	151	2	4.03897	5.43446	6.82995	0.00267274	0.00230814	0.0327654	0.0255029
chr17	38727096	38727196	6729354	0	+	0.29	[0,0.29]	chr17	676371	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5:ENST00000619356.1:ENST00000615741.1:ENST00000615441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	260	2	3.83387	5.43436	7.03485	6.97197e-4	3.12389e-4	0.0155984	0.00625974
chr12	132124893	132124993	5352324	0	+	0.6	(0.58,1]	chr12	523557	3	SS3_PROX	SS3_PROX:INTRON	EP400P1	ENSG00000185684.16	ENST00000488030.5:ENST00000332441.7:ENST00000641289.3:ENST00000475841.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	64	2	5.11355	5.434305	5.75506	0.0271806	9.38062e-4	0.112113	0.0135546
chr6	24520544	24520644	2881482	0	+	0.47	(0.45,0.485]	chr6	280245	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ALDH5A1	ENSG00000112294.14	ENST00000491546.5:ENST00000357578.8:ENST00000348925.2:ENST00000672652.1:ENST00000672352.1:ENST00000672619.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	67	2	5.1123	5.434175	5.75605	0.0458344	0.002004	0.142336	0.0230381
chr19	7350736	7350836	7197220	0	+	0.46	(0.45,0.485]	chr19	733484	11	INTRON	INTRON	ARHGEF18	ENSG00000104880.19	ENST00000668164.2	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.18438	5.43384	5.6833	0.0195193	0.00773818	0.0955413	0.0568726
chr2	191370592	191370692	977659	0	+	0.39	(0.36,0.39]	chr2	107595	3	SS5_PROX	SS5_PROX:INTRON	MYO1B	ENSG00000128641.19	ENST00000339514.8:ENST00000392318.8:ENST00000304164.8:ENST00000392316.5:ENST00000634375.1	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	4.99672	5.4337800000000005	5.87084	0.0604395	0.00196738	0.158506	0.022768300000000002
chr6	170396776	170396876	3076547	0	+	0.39	(0.36,0.39]	chr6	299192	8	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	4.99672	5.4337800000000005	5.87084	0.0604395	0.00196738	0.158506	0.022768300000000002
chr3	47435437	47435537	1760905	0	-	0.38	(0.36,0.39]	chr3	181600	3	SS3_PROX	SS3_PROX:INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000648151.1:ENST00000416208.5:ENST00000416847.5:ENST00000495603.2:ENST00000420588.5:ENST00000485967.1:ENST00000448217.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	68	2	5.26508	5.43369	5.6023	0.0258522	0.00795848	0.109555	0.0578938
chr2	169847044	169847144	949540	0	+	0.42	(0.419,0.45]	chr2	104297	186	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.20508	5.4336	5.66212	0.0266819	0.00979452	0.111563	0.0664239
chr15	59300234	59300334	6281892	0	-	0.6	(0.58,1]	chr15	619091	274	INTRON	INTRON	MYO1E	ENSG00000157483.9	ENST00000288235.9:ENST00000558571.1:ENST00000558646.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	64	2	5.31036	5.433585	5.55681	0.0126042	0.00312721	0.0761905	0.0311915
chr5	1054981	1055081	2608370	0	-	0.69	(0.58,1]	chr5	259538	11	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10:ENST00000634447.1	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.31036	5.433585	5.55681	0.0126042	0.00312721	0.0761905	0.0311915
chr18	10970645	10970745	7118139	0	-	0.46	(0.45,0.485]	chr18	724475	591	INTRON	INTRON	PIEZO2	ENSG00000154864.14	ENST00000302079.10:ENST00000674853.1:ENST00000383408.7:ENST00000503781.7:ENST00000580640.5:ENST00000582913.5:ENST00000686869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	67	2	5.28846	5.4335	5.57854	0.0230065	0.00612862	0.102982	0.0489549
chr14	68902077	68902177	5999362	0	-	0.57	(0.523,0.58]	chr14	588711	9	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6:ENST00000683261.1:ENST00000684096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	66	2	5.35452	5.433495000000001	5.51247	0.0230387	0.00453096	0.102982	0.0400651
chr17	17697342	17697442	6689008	0	+	0.54	(0.523,0.58]	chr17	671338	124	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.35452	5.433495000000001	5.51247	0.0230387	0.00453096	0.102982	0.0400651
chr6	79065400	79065500	3184756	0	-	0.4	(0.39,0.419]	chr6	309201	42	INTRON	INTRON	PHIP	ENSG00000146247.14	ENST00000275034.5	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.09906	5.43342	5.76778	0.0535378	0.0025422	0.150319	0.0271978
chr7	1939089	1939188	3529615	0	-	0.707071	(0.58,1]	chr7	340962	18	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000450235.5:ENST00000437877.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	161	2	3.75278	5.43342	7.11406	0.01024	1.2868e-5	0.0684871	6.14919e-4
chr22	38731002	38731101	7725129	0	+	0.545455	(0.523,0.58]	chr22	809289	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	GTPBP1	ENSG00000100226.16	ENST00000216044.10:ENST00000458073.5:ENST00000462332.1:ENST00000484971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	868	2	5.10198	5.43297	5.76396	1.07754e-4	1.01731e-5	0.00580428	5.1947e-4
chr14	63627129	63627229	5993292	0	-	0.39	(0.36,0.39]	chr14	587834	17	INTRON	INTRON	WDR89	ENSG00000140006.12	ENST00000620954.2:ENST00000394942.2:ENST00000267522.7:ENST00000554717.1	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.16105	5.43281	5.70457	0.022152	0.00993384	0.101784	0.0666221
chr5	94066376	94066475	2728853	0	-	0.383838	(0.36,0.39]	chr5	267899	128	INTRON	INTRON	FAM172A	ENSG00000113391.19	ENST00000395965.8:ENST00000505869.5:ENST00000509739.5:ENST00000509163.5:ENST00000502503.1:ENST00000506398.6:ENST00000504768.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	69	2	5.16105	5.43281	5.70457	0.022152	0.00993384	0.101784	0.0666221
chr1	7281811	7281911	13427	0	+	0.41	(0.39,0.419]	chr1	1889	318	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.26451	5.432729999999999	5.60095	0.0263614	0.00800901	0.110638	0.0580954
chr1	6030626	6030725	6742	0	+	0.393939	(0.39,0.419]	chr1	1420	28	INTRON	INTRON	KCNAB2	ENSG00000069424.16	ENST00000655548.1:ENST00000378111.6:ENST00000378097.6:ENST00000666163.1:ENST00000671676.1:ENST00000658883.1:ENST00000658691.1:ENST00000435937.6:ENST00000445501.6:ENST00000478098.5:ENST00000653262.1:ENST00000668706.1:ENST00000389632.9:ENST00000654144.1:ENST00000341524.6:ENST00000462676.3:ENST00000428161.6:ENST00000352527.6:ENST00000663169.1:ENST00000653635.1:ENST00000661248.1:ENST00000656198.1:ENST00000602612.5:ENST00000481789.2:ENST00000656746.1:ENST00000665338.1:ENST00000666299.1:ENST00000652845.1:ENST00000655703.1:ENST00000669250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	67	2	5.28643	5.432675	5.57892	0.041475	0.00396694	0.136301	0.0368027
chr16	16003820	16003920	6406542	0	+	0.51	(0.485,0.523]	chr16	633005	537	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	66	2	5.17012	5.4324449999999995	5.69477	0.038581	0.00203227	0.131324	0.0232814
chr19	58325661	58325761	7412921	0	-	0.45	(0.419,0.45]	chr19	772004	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000283103	ENSG00000283103.4	ENST00000664481.1:ENST00000634676.2:ENST00000659246.1:ENST00000671228.1:ENST00000658331.1:ENST00000669883.1:ENST00000651375.3:ENST00000669440.2:ENST00000666049.1:ENST00000687313.1	lncRNA	lncRNA	lncRNA	lncRNA	0	71	2	4.87598	5.432015	5.98805	0.0768574	0.00164584	0.174882	0.0202325
chr16	1459595	1459687	6532768	0	-	0.695652	(0.58,1]	chr16	648973	3	SS3_PROX	SS3_PROX:INTRON	CLCN7	ENSG00000103249.18	ENST00000382745.9:ENST00000448525.5:ENST00000262318.12:ENST00000569851.6	protein_coding	protein_coding	protein_coding	protein_coding	1	136	2	4.79756	5.431775	6.06599	0.00477081	1.46952e-4	0.0450109	0.00363207
chr5	94089645	94089745	2729089	0	-	0.37	(0.36,0.39]	chr5	267908	145	INTRON	INTRON	FAM172A	ENSG00000113391.19	ENST00000395965.8:ENST00000505869.5:ENST00000509163.5:ENST00000502503.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	74	2	4.86249	5.43174	6.00099	0.0181775	0.0139273	0.0955836	0.0805916
chr7	121381659	121381759	3694892	0	-	0.39	(0.36,0.39]	chr7	355164	10	INTRON	INTRON	FAM3C	ENSG00000196937.11	ENST00000359943.8:ENST00000412653.5:ENST00000426156.1	protein_coding	protein_coding	protein_coding	protein_coding	1	183	2	3.92376	5.431535	6.93931	0.0128339	1.15604e-4	0.0771174	0.00305897
chr1	97813923	97814023	548218	0	-	0.45	(0.419,0.45]	chr1	63038	731	INTRON	INTRON	DPYD	ENSG00000188641.14	ENST00000370192.8:ENST00000306031.5	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.30548	5.4314350000000005	5.55739	0.0310506	0.00792071	0.119758	0.057762
chr12	79680286	79680386	5461996	0	-	0.43	(0.419,0.45]	chr12	537130	115	INTRON	INTRON	PAWR	ENSG00000177425.11	ENST00000328827.9:ENST00000551712.1:ENST00000550006.1:ENST00000547571.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	68	2	5.30548	5.4314350000000005	5.55739	0.0310506	0.00792071	0.119758	0.057762
chr4	67887114	67887214	2051394	0	+	0.46	(0.45,0.485]	chr4	209734	843	INTRON	INTRON	UBA6-DT	ENSG00000248049.8	ENST00000500538.7:ENST00000667140.1:ENST00000663060.1	lncRNA	lncRNA	lncRNA	lncRNA	0	76	2	4.74641	5.4314350000000005	6.11646	0.0193126	0.00956667	0.0994526	0.0658012
chr7	137999910	138000010	3720702	0	-	0.45	(0.419,0.45]	chr7	357310	1	SS3_PROX	SS3_PROX:INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5:ENST00000468127.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	68	2	5.30548	5.4314350000000005	5.55739	0.0310506	0.00792071	0.119758	0.057762
chr14	91220342	91220442	5899559	0	+	0.37	(0.36,0.39]	chr14	576433	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000522816.1:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	156	2	3.98537	5.431385	6.8774	0.00312796	0.00307113	0.0356998	0.0309223
chr19	943815	943915	7185284	0	+	0.63	(0.58,1]	chr19	730741	107	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	136	2	4.15724	5.431274999999999	6.70531	0.00125905	0.00107173	0.0215793	0.0148869
chr1	43561117	43561216	107050	0	+	0.464646	(0.45,0.485]	chr1	13192	68	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	196	2	3.9725799999999998	5.43107	6.88956	0.00239127	8.22344e-4	0.0308863	0.0124043
chr12	65174610	65174710	5252530	0	+	0.37	(0.36,0.39]	chr12	512136	28	INTRON	INTRON	LEMD3	ENSG00000174106.3	ENST00000308330.3:ENST00000541171.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	67	2	5.40829	5.4309449999999995	5.4536	0.0321864	0.00581205	0.121593	0.0472624
chr5	122058520	122058620	2520799	0	+	0.37	(0.36,0.39]	chr5	250297	300	INTRON	INTRON	SRFBP1	ENSG00000151304.6	ENST00000504881.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	67	2	5.40829	5.4309449999999995	5.4536	0.0321864	0.00581205	0.121593	0.0472624
chr11	64200593	64200693	4868121	0	+	0.47	(0.45,0.485]	chr11	467025	3	SS5_PROX	SS5_PROX:INTRON	STIP1	ENSG00000168439.17	ENST00000358794.9:ENST00000305218.9:ENST00000536973.5:ENST00000538945.5:ENST00000540887.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	66	2	5.29973	5.43088	5.56203	0.035042	0.00322991	0.12704	0.0319521
chr2	54614319	54614418	799861	0	+	0.484848	(0.45,0.485]	chr2	90814	16	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7:ENST00000333896.5	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.29973	5.43088	5.56203	0.035042	0.00322991	0.12704	0.0319521
chr5	648016	648116	2378762	0	+	0.47	(0.45,0.485]	chr5	237645	1	SS5_PROX	SS5_PROX:INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	66	2	5.29973	5.43088	5.56203	0.035042	0.00322991	0.12704	0.0319521
chr10	18554369	18554469	4642272	0	-	0.41	(0.39,0.419]	chr10	443321	20	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	4.86193	5.43078	5.99963	0.0182739	0.0142473	0.0958352	0.0817691
chr19	55229778	55229871	7407209	0	-	0.473118	(0.45,0.485]	chr19	771215	1	UTR3	UTR3:EXON_MRNA	PPP6R1	ENSG00000105063.19	ENST00000412770.7:ENST00000587457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	66	2	5.38503	5.4307549999999996	5.47648	0.0308908	0.0039628	0.119556	0.0368027
chr2	201012954	201013052	1355966	0	-	0.459184	(0.45,0.485]	chr2	144141	11	INTRON	INTRON	FAM126B	ENSG00000155744.10	ENST00000681958.1:ENST00000418596.7:ENST00000286181.7:ENST00000498780.5:ENST00000452799.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	66	2	5.38503	5.4307549999999996	5.47648	0.0308908	0.0039628	0.119556	0.0368027
chr4	124708999	124709099	2320520	0	-	0.43	(0.419,0.45]	chr4	233240	297	INTRON	INTRON	ANKRD50	ENSG00000151458.12	ENST00000504087.6:ENST00000515641.1	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	5.04004	5.4307	5.82136	0.0210659	0.0137308	0.0996078	0.0814223
chr14	35745426	35745525	5960761	0	-	0.464646	(0.45,0.485]	chr14	584322	25	INTRON	INTRON	RALGAPA1	ENSG00000174373.17	ENST00000307138.10:ENST00000389698.7:ENST00000680220.1:ENST00000554259.6:ENST00000637992.1:ENST00000382366.7:ENST00000553892.2:ENST00000554652.5:ENST00000554704.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	238	2	3.50226	5.430585	7.35891	0.00162566	9.74981e-4	0.0200325	0.0187475
chr14	102200423	102200523	5916808	0	+	0.45	(0.419,0.45]	chr14	578745	21	INTRON	INTRON	WDR20	ENSG00000140153.18	ENST00000557485.5:ENST00000335263.9:ENST00000424963.6:ENST00000322340.9:ENST00000556807.1:ENST00000555879.5:ENST00000342702.8:ENST00000299135.6:ENST00000454394.2:ENST00000556094.1:ENST00000556511.2:ENST00000558854.5:ENST00000559708.5:ENST00000558135.5:ENST00000558448.5:ENST00000555973.1:ENST00000559478.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	72	2	4.98054	5.430490000000001	5.88044	0.0192645	0.0154548	0.0954446	0.0869771
chr15	56977462	56977562	6110931	0	+	0.42	(0.419,0.45]	chr15	601587	560	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	72	2	4.98054	5.430490000000001	5.88044	0.0192645	0.0154548	0.0954446	0.0869771
chr3	179784736	179784835	1638360	0	+	0.383838	(0.36,0.39]	chr3	171546	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	USP13	ENSG00000058056.10	ENST00000680587.1:ENST00000263966.8:ENST00000680008.1:ENST00000679972.1:ENST00000679752.1:ENST00000681262.1:ENST00000679407.1:ENST00000679674.1:ENST00000680549.1:ENST00000679772.1:ENST00000681736.1:ENST00000681918.1:ENST00000681630.1:ENST00000680734.1:ENST00000680308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	303	2	3.2339	5.4303	7.6267	0.0142961	1.55927e-5	0.0820016	7.04149e-4
chr22	25086287	25086387	7699896	0	+	0.47	(0.45,0.485]	chr22	805908	155	INTRON	INTRON	KIAA1671	ENSG00000197077.14	ENST00000358431.8:ENST00000406486.8:ENST00000494730.2:ENST00000401395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	146	2	4.37217	5.430205	6.48824	0.00499158	9.45601e-4	0.0463896	0.0136002
chr6	20483020	20483120	2863817	0	+	0.43	(0.419,0.45]	chr6	279660	1	SS5_PROX	SS5_PROX:INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	4.62273	5.429945	6.23716	0.103601	8.82327e-4	0.197541	0.0129974
chr6	82052738	82052838	3190485	0	-	0.33	(0.29,0.33]	chr6	309363	833	INTRON	INTRON	LINC02542	ENSG00000226453.3	ENST00000667666.1:ENST00000663543.1:ENST00000668303.1:ENST00000660637.1:ENST00000668266.1:ENST00000666226.1	lncRNA	lncRNA	lncRNA	lncRNA	0	67	2	5.02395	5.42936	5.83477	0.0445554	0.00150459	0.140478	0.0188758
chr10	131918487	131918587	4616201	0	+	0.55	(0.523,0.58]	chr10	441069	55	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	67	2	5.20104	5.429265	5.65749	0.0182707	0.00648051	0.0921579	0.0503748
chr11	68349435	68349534	4882452	0	+	0.535354	(0.523,0.58]	chr11	470548	8	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	67	2	5.20104	5.429265	5.65749	0.0182707	0.00648051	0.0921579	0.0503748
chr9	134343326	134343426	4260856	0	+	0.57	(0.523,0.58]	chr9	406311	163	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	67	2	5.20104	5.429265	5.65749	0.0182707	0.00648051	0.0921579	0.0503748
chr7	47388205	47388305	3587674	0	-	0.55	(0.523,0.58]	chr7	346036	182	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	143	2	4.32303	5.428834999999999	6.53464	0.00395533	9.56741e-4	0.0406092	0.013724
chr11	87252771	87252871	4912537	0	+	0.28	[0,0.29]	chr11	474136	157	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding	1	139	2	4.28488	5.428800000000001	6.57272	0.0018809	9.52569e-4	0.0270971	0.0136805
chr2	54013166	54013266	795332	0	+	0.48	(0.45,0.485]	chr2	90708	379	INTRON	INTRON	ACYP2	ENSG00000170634.13	ENST00000458030.3:ENST00000422521.2:ENST00000607452.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	5.42587	5.428795	5.43172	0.0290571	0.00440365	0.116079	0.0393688
chr2	239349979	239350079	1392210	0	-	0.61	(0.58,1]	chr2	148752	255	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	63	2	5.30747	5.428625	5.54978	0.0196049	0.00165911	0.0955413	0.0202545
chr9	40105957	40106057	4309074	0	-	0.61	(0.58,1]	chr9	411930	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000284116	ENSG00000284116.1	ENST00000639363.1	lncRNA	lncRNA	lncRNA	lncRNA	0	63	2	5.30747	5.428625	5.54978	0.0196049	0.00165911	0.0955413	0.0202545
chr3	9468971	9469070	1402848	0	+	0.40404	(0.39,0.419]	chr3	150230	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000406341.5:ENST00000670063.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000466242.5:ENST00000682236.1:ENST00000421188.1:ENST00000687014.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	154	2	4.65768	5.428585	6.19949	0.0103045	5.3025e-4	0.0684871	0.00909822
chr12	132542225	132542325	5353038	0	+	0.69	(0.58,1]	chr12	523670	139	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.35214	5.428555	5.50497	0.0181452	0.00187297	0.0921579	0.0219434
chr7	210373	210473	3305758	0	+	0.59	(0.58,1]	chr7	320161	10	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.35214	5.428555	5.50497	0.0181452	0.00187297	0.0921579	0.0219434
chr17	29082538	29082638	6875925	0	-	0.6	(0.58,1]	chr17	697788	1	SS3_PROX	SS3_PROX:INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000529578.5:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000546105.5:ENST00000527312.5:ENST00000531438.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	67	2	5.02314	5.428445	5.83375	0.00751249	0.00638322	0.0576451	0.0501889
chr13	113520933	113521033	5658488	0	+	0.47	(0.45,0.485]	chr13	555715	2	SS5_PROX	SS5_PROX:INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	147	2	4.57535	5.428325	6.2813	0.00719875	5.36627e-4	0.056408	0.0091711
chr8	130277041	130277141	4081964	0	-	0.54	(0.523,0.58]	chr8	388157	301	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000521075.5:ENST00000524367.5:ENST00000520927.5:ENST00000524299.1:ENST00000521426.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	66	2	5.1205	5.428295	5.73609	0.0416463	0.0017613	0.136301	0.0211077
chr10	34639839	34639939	4670052	0	-	0.44	(0.419,0.45]	chr10	445529	1223	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	1	153	2	4.24272	5.4280550000000005	6.61339	0.0059347	0.00171002	0.0506158	0.0206538
chr20	36158490	36158590	7467925	0	+	0.52	(0.485,0.523]	chr20	777629	32	INTRON	INTRON	EPB41L1	ENSG00000088367.23	ENST00000202028.9:ENST00000432589.5:ENST00000406771.6:ENST00000430276.5:ENST00000373946.7:ENST00000441639.5:ENST00000373950.6:ENST00000628415.2:ENST00000452261.5:ENST00000447825.5:ENST00000427533.2:ENST00000338074.7:ENST00000636016.2:ENST00000373945.5	protein_coding	protein_coding	protein_coding	protein_coding	0	82	2	4.52142	5.427655	6.33389	0.0273555	0.00567224	0.119337	0.0496143
chr19	16458315	16458415	7344549	0	-	0.53	(0.523,0.58]	chr19	760800	157	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5:ENST00000597937.5:ENST00000593760.5:ENST00000596037.5:ENST00000597559.5:ENST00000602151.1:ENST00000595845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	66	2	5.30515	5.427635	5.55012	0.0217068	0.00509102	0.100615	0.0433513
chr3	24482522	24482622	1716353	0	-	0.53	(0.523,0.58]	chr3	178018	232	INTRON	INTRON	THRB	ENSG00000151090.20	ENST00000646209.2:ENST00000396671.7:ENST00000356447.9:ENST00000646432.1:ENST00000643772.1:ENST00000645139.1:ENST00000642307.1:ENST00000644321.1:ENST00000646966.1:ENST00000416420.5:ENST00000413780.5:ENST00000447875.5:ENST00000453729.6:ENST00000431815.5:ENST00000447414.5:ENST00000428492.5:ENST00000418247.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	66	2	5.30515	5.427635	5.55012	0.0217068	0.00509102	0.100615	0.0433513
chr16	85230165	85230265	6515370	0	+	0.48	(0.45,0.485]	chr16	646377	24	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	70	2	5.01267	5.427625	5.84258	0.0151085	0.011221	0.0841543	0.071709
chr6	111568362	111568462	2987954	0	+	0.39	(0.36,0.39]	chr6	292725	27	INTRON	INTRON	TRAF3IP2-AS1	ENSG00000231889.8	ENST00000449449.7:ENST00000685477.1:ENST00000687951.1:ENST00000438298.7:ENST00000442928.6:ENST00000532353.1:ENST00000456352.2:ENST00000440395.1:ENST00000606892.1	lncRNA	lncRNA	lncRNA	lncRNA	0	67	2	5.19713	5.427574999999999	5.65802	0.0462258	0.003279	0.143138	0.0322062
chr16	47214972	47215072	6583330	0	-	0.25	[0,0.29]	chr16	658281	520	INTRON	INTRON	ITFG1	ENSG00000129636.13	ENST00000568047.5:ENST00000320640.11:ENST00000537184.6:ENST00000542691.5:ENST00000567957.1:ENST00000544001.6:ENST00000565262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	64	2	5.34548	5.42738	5.50928	0.0197148	0.00267774	0.0958249	0.0282006
chr11	377727	377827	4784077	0	+	0.68	(0.58,1]	chr11	457780	4	SS5_PROX	SS5_PROX:INTRON	B4GALNT4	ENSG00000182272.12	ENST00000329962.11	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.08534	5.42734	5.76934	0.00849371	0.00549379	0.0617717	0.0454065
chr11	70815066	70815166	5062434	0	-	0.67	(0.58,1]	chr11	492713	75	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	5.08534	5.42734	5.76934	0.00849371	0.00549379	0.0617717	0.0454065
chr9	134365882	134365981	4261082	0	+	0.686869	(0.58,1]	chr9	406311	389	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	66	2	5.08534	5.42734	5.76934	0.00849371	0.00549379	0.0617717	0.0454065
chr2	111413310	111413410	1252769	0	-	0.39	(0.36,0.39]	chr2	134896	350	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1	lncRNA	lncRNA	lncRNA	lncRNA	0	67	2	5.36211	5.427175	5.49224	0.0304242	0.00643924	0.11845	0.0503748
chr3	14402947	14403047	1414976	0	+	0.68	(0.58,1]	chr3	151900	1	SS5_PROX	SS5_PROX:INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000622810.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000613930.4:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	63	2	5.39546	5.42709	5.45872	0.0168207	0.00211999	0.0884836	0.0239744
chr4	678188	678278	1993633	0	+	0.588889	(0.58,1]	chr4	203052	1	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MYL5	ENSG00000215375.7	ENST00000506838.5:ENST00000505477.5:ENST00000503300.5:ENST00000400159.7:ENST00000511290.5:ENST00000513662.1:ENST00000507804.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	63	2	5.39546	5.42709	5.45872	0.0168207	0.00211999	0.0884836	0.0239744
chr2	74003166	74003266	834030	0	+	0.52	(0.485,0.523]	chr2	94247	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TET3	ENSG00000187605.16	ENST00000409262.8:ENST00000305799.8	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.12092	5.426715	5.73251	0.0414411	0.00184599	0.136301	0.0217471
chr6	106246251	106246351	3219764	0	-	0.4	(0.39,0.419]	chr6	312361	283	INTRON	INTRON	ATG5	ENSG00000057663.16	ENST00000636437.1:ENST00000636335.1:ENST00000369070.5:ENST00000369076.8:ENST00000635758.2:ENST00000360666.6:ENST00000343245.7:ENST00000646025.1:ENST00000613993.1:ENST00000476518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	67	2	5.19579	5.42662	5.65745	0.0469937	0.00330348	0.143232	0.0323993
chr2	239283575	239283675	1391544	0	-	0.36	(0.33,0.36]	chr2	148740	320	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	67	2	5.11012	5.4266000000000005	5.74308	0.04702	0.00238447	0.143232	0.0260514
chr9	39179259	39179358	4305740	0	-	0.464646	(0.45,0.485]	chr9	411865	5	INTRON	INTRON	CNTNAP3	ENSG00000106714.18	ENST00000297668.11:ENST00000377656.6:ENST00000358144.6:ENST00000443583.6:ENST00000377659.1:ENST00000377653.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	69	2	5.0722	5.4265799999999995	5.78096	0.0166968	0.00988295	0.0884836	0.0664239
chr17	17741450	17741550	6689450	0	+	0.49	(0.485,0.523]	chr17	671344	169	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.30159	5.4260649999999995	5.55054	0.0215787	0.00529578	0.100612	0.044517
chr3	39148305	39148404	1739972	0	-	0.515152	(0.485,0.523]	chr3	180188	12	INTRON	INTRON	CSRNP1	ENSG00000144655.15	ENST00000273153.10:ENST00000514182.1	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.30159	5.4260649999999995	5.55054	0.0215787	0.00529578	0.100612	0.044517
chr22	42888042	42888142	7823004	0	-	0.61	(0.58,1]	chr22	820583	31	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000337959.8:ENST00000263246.8:ENST00000407585.5:ENST00000403744.7:ENST00000402229.5:ENST00000634914.1	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.25731	5.425890000000001	5.59447	0.0117666	0.00358178	0.0737098	0.0342681
chr20	38427600	38427679	7561103	0	-	0.455696	(0.45,0.485]	chr20	789771	3	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	147	2	4.59248	5.425675	6.25887	0.00748565	5.11238e-4	0.0576451	0.00887014
chr8	128040481	128040579	3920286	0	+	0.316327	(0.29,0.33]	chr8	374321	2	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	1	178	2	5.37012	5.4255949999999995	5.48107	0.0222022	4.64405e-5	0.101857	0.0015599
chrX	1423434	1423534	7965717	0	-	0.46	(0.45,0.485]	chrX	834272	12	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.38553	5.425555	5.46558	0.0273644	0.00490471	0.112372	0.0422077
chr1	39117605	39117705	93797	0	+	0.41	(0.39,0.419]	chr1	11068	115	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000689911.1:ENST00000567887.5:ENST00000372915.8:ENST00000472385.2:ENST00000693209.1:ENST00000524432.5:ENST00000467673.5:ENST00000688212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	68	2	5.04815	5.4254549999999995	5.80276	0.0572698	0.00233691	0.154343	0.0257208
chr2	239268886	239268986	1391397	0	-	0.4	(0.39,0.419]	chr2	148740	173	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	68	2	5.04815	5.4254549999999995	5.80276	0.0572698	0.00233691	0.154343	0.0257208
chr9	93661829	93661925	4184516	0	+	0.40625	(0.39,0.419]	chr9	397767	9	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.04815	5.4254549999999995	5.80276	0.0572698	0.00233691	0.154343	0.0257208
chr16	81679924	81680024	6510110	0	+	0.54	(0.523,0.58]	chr16	645979	9	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	1	174	2	4.10968	5.425425000000001	6.74117	0.0075776	1.05811e-4	0.0579104	0.00286061
chr22	17967422	17967522	7759248	0	-	0.51	(0.485,0.523]	chr22	813226	602	INTRON	INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000495076.5:ENST00000424046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	144	2	4.58284	5.425235	6.26763	0.00639185	4.69507e-4	0.0529032	0.00833265
chr20	63734064	63734161	7509381	0	+	0.57732000000000006	(0.523,0.58]	chr20	783523	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000632538.1:ENST00000484569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	147	2	4.77629	5.4251450000000006	6.074	0.00906277	2.57885e-4	0.0637469	0.00545544
chr3	149889292	149889392	1596073	0	+	0.57	(0.523,0.58]	chr3	168740	168	INTRON	INTRON	RNF13	ENSG00000082996.20	ENST00000344229.7:ENST00000491086.5:ENST00000392894.8:ENST00000467977.5:ENST00000474348.5:ENST00000467996.1:ENST00000468648.5:ENST00000459632.5:ENST00000466795.5:ENST00000490631.5:ENST00000361785.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	69	2	5.02927	5.42483	5.82039	0.0139724	0.0095202	0.0805959	0.0650078
chr10	22687527	22687627	4647425	0	-	0.45	(0.419,0.45]	chr10	443564	253	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5:ENST00000605011.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	69	2	4.98767	5.424754999999999	5.86184	0.0669167	0.00223565	0.16272	0.024843
chrX	44898885	44898985	7871930	0	+	0.55	(0.523,0.58]	chrX	825082	245	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	173	2	4.01837	5.42474	6.83111	0.00895679	8.07247e-5	0.0637469	0.00233145
chr19	33203869	33203965	7240911	0	+	0.635417	(0.58,1]	chr19	741411	1	EXON_MRNA	EXON_MRNA:INTRON	LRP3	ENSG00000130881.14	ENST00000592484.5:ENST00000253193.9:ENST00000590275.1:ENST00000590278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	65	2	4.94882	5.424685	5.90055	0.0354433	6.1741e-4	0.127188	0.0101143
chr6	158324667	158324767	3061768	0	+	0.42	(0.419,0.45]	chr6	297592	100	INTRON	INTRON	ENSG00000274023:TULP4	ENSG00000274023.1:ENSG00000130338.13	ENST00000619713.1:ENST00000367097.8:ENST00000367094.6:ENST00000616856.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	2	205	2	3.96669	5.424675	6.8826599999999996	0.00374639	0.001092	0.0393941	0.0150659
chr12	132541529	132541628	5353031	0	+	0.626263	(0.58,1]	chr12	523670	132	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.21377	5.4246	5.63543	0.0230012	0.00131165	0.102982	0.0171898
chr19	56595528	56595628	7295034	0	+	0.68	(0.58,1]	chr19	751226	1	SS5_PROX	SS5_PROX:INTRON	ZNF71	ENSG00000197951.10	ENST00000328070.10:ENST00000599599.7:ENST00000594944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	5.21377	5.4246	5.63543	0.0230012	0.00131165	0.102982	0.0171898
chr5	78507884	78507984	2701958	0	-	0.42	(0.419,0.45]	chr5	266631	167	INTRON	INTRON	LHFPL2	ENSG00000145685.14	ENST00000515007.6:ENST00000380345.7	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.27868	5.424595	5.57051	0.0457732	0.00441471	0.142336	0.0393688
chr21	34839100	34839200	7655335	0	-	0.45	(0.419,0.45]	chr21	801030	41	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000469087.1:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	74	2	4.69033	5.424565	6.1588	0.0958674	0.00107628	0.189038	0.0148869
chrX	48819268	48819357	7879405	0	+	0.449438	(0.419,0.45]	chrX	826248	5	INTRON	INTRON	HDAC6	ENSG00000094631.21	ENST00000376619.6:ENST00000477528.5:ENST00000334136.11:ENST00000643659.1:ENST00000643374.1:ENST00000644068.1:ENST00000643934.1:ENST00000647398.1:ENST00000486227.5:ENST00000645643.1:ENST00000486665.5:ENST00000470942.1:ENST00000480525.5:ENST00000498808.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	67	2	5.40477	5.42442	5.44407	0.0385125	0.00585948	0.131324	0.0474117
chr17	77482833	77482932	6805210	0	+	0.636364	(0.58,1]	chr17	686820	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	63	2	5.41094	5.42423	5.43752	0.0156166	0.00240622	0.0849828	0.0261006
chr4	1325860	1325957	1995297	0	+	0.608247	(0.58,1]	chr4	203264	19	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	63	2	5.41094	5.42423	5.43752	0.0156166	0.00240622	0.0849828	0.0261006
chr12	132534660	132534759	5352962	0	+	0.666667	(0.58,1]	chr12	523670	63	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	132	2	4.47001	5.4241150000000005	6.37822	0.00252415	4.15967e-4	0.031696	0.00768537
chr16	12262142	12262242	6392490	0	+	0.46	(0.45,0.485]	chr16	631965	621	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	4.7111	5.42394	6.13678	0.0781398	7.46272e-4	0.175203	0.0115813
chr4	39218478	39218572	2032972	0	+	0.414894	(0.39,0.419]	chr4	207573	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	WDR19	ENSG00000157796.18	ENST00000511729.5:ENST00000399820.8:ENST00000506869.5:ENST00000506503.1:ENST00000512095.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	71	2	4.98886	5.42394	5.85902	0.0177874	0.0142222	0.0914273	0.0833845
chr5	20704028	20704127	2388625	0	+	0.414141	(0.39,0.419]	chr5	238906	38	INTRON	INTRON	LINC02241	ENSG00000251629.7	ENST00000657383.1:ENST00000664411.1:ENST00000668363.1:ENST00000666214.1:ENST00000668829.1:ENST00000660596.1:ENST00000653395.1:ENST00000661358.1:ENST00000662354.1:ENST00000660152.1:ENST00000656809.1:ENST00000654310.1:ENST00000653469.1:ENST00000502427.5:ENST00000663898.1:ENST00000514876.5:ENST00000661443.1:ENST00000666245.1:ENST00000665164.1:ENST00000655312.1:ENST00000665750.1:ENST00000663691.1:ENST00000667696.1:ENST00000661008.1:ENST00000660427.1:ENST00000668352.1:ENST00000664874.1:ENST00000657737.1:ENST00000660211.1:ENST00000660453.1:ENST00000664930.1:ENST00000661497.1:ENST00000667733.1:ENST00000662453.1:ENST00000660411.1:ENST00000662556.1:ENST00000659352.1:ENST00000669224.1:ENST00000667015.1:ENST00000654483.1:ENST00000512688.2:ENST00000656233.1:ENST00000667230.1:ENST00000656908.1:ENST00000670749.1:ENST00000665740.1:ENST00000652820.1:ENST00000666241.1:ENST00000655570.1:ENST00000658934.1:ENST00000669262.1:ENST00000657864.1:ENST00000666246.1:ENST00000665726.1:ENST00000659988.1:ENST00000668593.1:ENST00000669525.1	lncRNA	lncRNA	lncRNA	lncRNA	0	71	2	4.98886	5.42394	5.85902	0.0177874	0.0142222	0.0914273	0.0833845
chr6	111790225	111790325	3238287	0	-	0.43	(0.419,0.45]	chr6	313900	92	INTRON	INTRON	FYN	ENSG00000010810.17	ENST00000354650.7:ENST00000368682.7:ENST00000368667.6:ENST00000368678.8:ENST00000520518.5:ENST00000518295.5:ENST00000523238.5:ENST00000523574.5:ENST00000518630.5:ENST00000523570.5:ENST00000484067.6:ENST00000521062.5:ENST00000462598.7:ENST00000521361.5:ENST00000487824.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	69	2	5.15214	5.42377	5.6954	0.0254103	0.0109324	0.108573	0.0706366
chr7	139665487	139665587	3722800	0	-	0.57	(0.523,0.58]	chr7	357498	334	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	4	602	2	5.03779	5.423695	5.8096	2.56251e-4	1.2568e-5	0.0090688	6.03935e-4
chr1	77711576	77711651	516103	0	-	0.4	(0.39,0.419]	chr1	60850	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	USP33	ENSG00000077254.14	ENST00000370794.7:ENST00000370793.5:ENST00000357428.5:ENST00000481579.5:ENST00000477949.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	70	2	5.04836	5.4235299999999995	5.7987	0.0195328	0.0126072	0.0955413	0.0768036
chr7	47476206	47476306	3588570	0	-	0.53	(0.523,0.58]	chr7	346123	231	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	2	193	2	3.75796	5.4235050000000005	7.08905	0.00137158	0.00133135	0.0226056	0.0173248
chr11	70810569	70810669	5062389	0	-	0.63	(0.58,1]	chr11	492713	30	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	65	2	5.14497	5.423439999999999	5.70191	0.00964351	0.00474658	0.0659937	0.0413976
chr5	73802762	73802861	2453466	0	+	0.333333	(0.33,0.36]	chr5	244963	70	INTRON	INTRON	ARHGEF28	ENSG00000214944.10	ENST00000545377.5:ENST00000296794.10:ENST00000513042.7:ENST00000426542.6:ENST00000437974.5	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.38284	5.423195	5.46355	0.0317908	0.00462971	0.121384	0.0408278
chr1	39419674	39419774	96909	0	+	0.57	(0.523,0.58]	chr1	11400	48	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000567887.5:ENST00000372915.8:ENST00000564288.6:ENST00000671089.2:ENST00000372925.6:ENST00000289893.8:ENST00000686067.1:ENST00000687997.1:ENST00000673980.1:ENST00000530275.3:ENST00000683517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	68	2	5.08882	5.42312	5.75742	0.0155135	0.00834774	0.0849828	0.0598672
chr11	70739286	70739386	5061674	0	-	0.56	(0.523,0.58]	chr11	492701	214	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	68	2	5.08882	5.42312	5.75742	0.0155135	0.00834774	0.0849828	0.0598672
chr19	32351430	32351529	7238533	0	+	0.555556	(0.523,0.58]	chr19	741026	37	INTRON	INTRON	ZNF507	ENSG00000168813.17	ENST00000311921.8:ENST00000355898.6:ENST00000587084.5:ENST00000544431.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	68	2	5.08882	5.42312	5.75742	0.0155135	0.00834774	0.0849828	0.0598672
chr1	217468510	217468610	660361	0	-	0.47	(0.45,0.485]	chr1	77725	188	INTRON	INTRON	GPATCH2	ENSG00000092978.11	ENST00000366935.8	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.12938	5.422985000000001	5.71659	0.018513	0.00873194	0.0928429	0.0612699
chr6	108633265	108633365	2975720	0	+	0.44	(0.419,0.45]	chr6	291627	711	INTRON	INTRON	FOXO3	ENSG00000118689.15	ENST00000343882.10:ENST00000406360.2	protein_coding	protein_coding	protein_coding	protein_coding	1	153	2	4.1811	5.422905	6.66471	0.00544202	0.00199987	0.0486855	0.0230381
chr5	148392718	148392818	2562856	0	+	0.48	(0.45,0.485]	chr5	254487	28	INTRON	INTRON	FBXO38	ENSG00000145868.17	ENST00000296701.10:ENST00000503613.5:ENST00000340253.10:ENST00000394370.7:ENST00000508326.5:ENST00000509411.5:ENST00000511080.5:ENST00000504971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	147	2	4.6094	5.422745	6.23609	0.00778782	4.87276e-4	0.0590114	0.00859082
chr1	48226083	48226181	120960	0	+	0.581633	(0.58,1]	chr1	15165	9	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	132	2	4.40362	5.422605	6.44159	0.00221069	5.10596e-4	0.0295736	0.00886422
chr17	3824563	3824658	6838732	0	-	0.357895	(0.33,0.36]	chr17	691919	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NCBP3	ENSG00000074356.17	ENST00000389005.6:ENST00000574911.5:ENST00000575815.5:ENST00000577169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	179	2	4.09743	5.42259	6.74775	0.00861357	1.66494e-4	0.0623824	0.00397356
chr4	1944967	1945066	1996742	0	+	0.535354	(0.523,0.58]	chr4	203544	27	UTR3	UTR3:EXON_MRNA:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000503128.5:ENST00000677559.1:ENST00000678714.1:ENST00000511904.1:ENST00000513726.5:ENST00000482415.6:ENST00000514329.5:ENST00000502425.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	65	2	5.35124	5.42223	5.49322	0.0295772	0.00324246	0.116079	0.0319521
chr7	47354821	47354920	3587339	0	-	0.535354	(0.523,0.58]	chr7	346030	81	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.35124	5.42223	5.49322	0.0295772	0.00324246	0.116079	0.0319521
chr12	65961746	65961846	5256824	0	+	0.44	(0.419,0.45]	chr12	512328	30	INTRON	INTRON	HMGA2	ENSG00000149948.14	ENST00000403681.7:ENST00000539662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	67	2	5.23407	5.4221900000000005	5.61031	0.0486006	0.004032	0.145074	0.0371291
chr16	72073791	72073891	6491303	0	+	0.53	(0.523,0.58]	chr16	645096	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	HPR	ENSG00000261701.9	ENST00000649683.1:ENST00000540303.7:ENST00000566168.1:ENST00000561690.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	194	2	4.27222	5.421965	6.57171	0.00369199	2.97843e-4	0.0389784	0.00604717
chr3	111111809	111111909	1532035	0	+	0.44	(0.419,0.45]	chr3	162837	4	SS3_PROX	SS3_PROX:INTRON	NECTIN3	ENSG00000177707.11	ENST00000491525.5:ENST00000461477.5:ENST00000485303.6:ENST00000319792.7:ENST00000486596.5:ENST00000493615.5:ENST00000488016.1:ENST00000470618.1:ENST00000481766.1:ENST00000478327.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	67	2	5.39934	5.421905	5.44447	0.0364384	0.00646489	0.128173	0.0503748
chr1	21457172	21457271	58277	0	+	0.40404	(0.39,0.419]	chr1	5965	30	INTRON	INTRON	NBPF3	ENSG00000142794.19	ENST00000454000.6:ENST00000318220.10:ENST00000318249.10:ENST00000342104.9:ENST00000486229.5:ENST00000434838.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	72	2	4.92679	5.421855	5.91692	0.0162442	0.0160946	0.0896852	0.0873195
chr12	132530080	132530180	5352916	0	+	0.5	(0.485,0.523]	chr12	523670	17	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.08528	5.4215599999999995	5.75784	0.0154142	0.0086528	0.0849828	0.0612699
chr22	42949526	42949625	7823626	0	-	0.272727	[0,0.29]	chr22	820622	26	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000407585.5:ENST00000402229.5:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5:ENST00000453079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	65	2	5.05409	5.421535	5.78898	0.0318802	0.00129345	0.12158	0.017071
chr10	87221455	87221555	4723357	0	-	0.35	(0.33,0.36]	chr10	450862	77	INTRON	INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6	lncRNA	lncRNA	lncRNA	lncRNA	0	70	2	4.83538	5.421525	6.00767	0.0679743	0.00123038	0.164413	0.0164259
chr7	79310972	79311072	3625106	0	-	0.33	(0.29,0.33]	chr7	349228	3022	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000628997.1:ENST00000636424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	65	2	5.35847	5.42139	5.48431	0.0269557	0.00360762	0.112113	0.0342681
chr8	75540775	75540872	3846384	0	+	0.298969	(0.29,0.33]	chr8	369233	3	INTRON	INTRON	HNF4G	ENSG00000164749.13	ENST00000396419.5:ENST00000354370.5:ENST00000396423.4:ENST00000674002.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	65	2	5.35847	5.42139	5.48431	0.0269557	0.00360762	0.112113	0.0342681
chr11	70539430	70539530	5059667	0	-	0.65	(0.58,1]	chr11	492663	361	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	159	2	4.26426	5.42124	6.57822	0.00360545	7.66421e-5	0.0385302	0.00224403
chr1	12584348	12584447	402446	0	-	0.656566	(0.58,1]	chr1	46222	33	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	469	2	4.79477	5.42099	6.04721	6.02729e-5	3.16902e-5	0.0043082	0.00117282
chr17	46653643	46653743	6745641	0	+	0.56	(0.523,0.58]	chr17	679410	100	INTRON	INTRON	NSF	ENSG00000073969.18	ENST00000398238.8:ENST00000575068.5	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.39327	5.42086	5.44845	0.0277354	0.00361636	0.112851	0.0342681
chr11	115302061	115302161	5129106	0	-	0.5	(0.485,0.523]	chr11	498106	147	INTRON	INTRON	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000541434.5:ENST00000543249.1:ENST00000540951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	65	2	5.30837	5.420725	5.53308	0.0314138	0.00304306	0.12069	0.0306636
chr8	503288	503388	3931437	0	-	0.52	(0.485,0.523]	chr8	375980	83	INTRON	INTRON	TDRP	ENSG00000180190.13	ENST00000523656.5:ENST00000324079.11	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.35167	5.420665	5.48966	0.0294163	0.0033837199999999998	0.116079	0.0328791
chr16	23389186	23389286	6567867	0	-	0.58	(0.523,0.58]	chr16	655260	1	SS3_PROX	SS3_PROX:INTRON	COG7	ENSG00000168434.13	ENST00000307149.10:ENST00000566364.1:ENST00000561854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	66	2	5.25403	5.420415	5.5868	0.020474	0.00573579	0.0979776	0.0467736
chr17	314441	314541	6821420	0	-	0.53	(0.523,0.58]	chr17	689582	79	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	5.25403	5.420415	5.5868	0.020474	0.00573579	0.0979776	0.0467736
chr15	20441241	20441341	6202459	0	-	0.61	(0.58,1]	chr15	610287	2	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000424611.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	63	2	5.36153	5.41996	5.47839	0.0145198	0.00273899	0.0823104	0.028553
chr4	2825396	2825496	2000372	0	+	0.57	(0.523,0.58]	chr4	203973	2	SS5_PROX	SS5_PROX:INTRON	SH3BP2	ENSG00000087266.17	ENST00000503393.8:ENST00000504294.5:ENST00000508385.5:ENST00000511663.5:ENST00000512014.5:ENST00000435136.8:ENST00000511185.5:ENST00000511747.6:ENST00000356331.9:ENST00000515737.5:ENST00000515183.5:ENST00000505941.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	67	2	4.96197	5.419935000000001	5.8779	0.0521137	0.00121652	0.148503	0.0162693
chr20	8187852	8187952	7427138	0	+	0.33	(0.29,0.33]	chr20	773674	371	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	66	2	5.24515	5.419605	5.59406	0.0184845	0.00631714	0.0928429	0.0501889
chr11	71067758	71067858	5064971	0	-	0.5	(0.485,0.523]	chr11	492754	108	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000618363.4:ENST00000458632.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	65	2	5.26375	5.41949	5.57523	0.0335928	0.00274261	0.124319	0.028553
chr11	118630706	118630806	4948507	0	+	0.5	(0.485,0.523]	chr11	477795	1	SS3_PROX	SS3_PROX:INTRON	PHLDB1	ENSG00000019144.20	ENST00000361417.6:ENST00000530994.5:ENST00000600882.6:ENST00000528594.5:ENST00000621027.4:ENST00000356063.9:ENST00000532517.5:ENST00000614369.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	65	2	5.39369	5.41929	5.44489	0.0275819	0.00377098	0.112782	0.0353672
chr2	20218807	20218906	1096941	0	-	0.515152	(0.485,0.523]	chr2	119640	130	INTRON	INTRON	SDC1	ENSG00000115884.11	ENST00000254351.9:ENST00000381150.5:ENST00000403076.5:ENST00000429035.1:ENST00000482879.5:ENST00000447124.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	65	2	5.39369	5.41929	5.44489	0.0275819	0.00377098	0.112782	0.0353672
chr9	75005845	75005944	4318067	0	-	0.383838	(0.36,0.39]	chr9	412763	56	INTRON	INTRON	CARNMT1	ENSG00000156017.13	ENST00000376834.8:ENST00000451153.1	protein_coding	protein_coding	protein_coding	protein_coding	1	151	2	4.14778	5.419225	6.69067	0.00435707	0.00203951	0.0427656	0.0233536
chr2	218428523	218428610	1033750	0	+	0.482759	(0.45,0.485]	chr2	112239	2	SS5_PROX	SS5_PROX:INTRON	VIL1	ENSG00000127831.11	ENST00000248444.10:ENST00000392114.6:ENST00000440053.1	protein_coding	protein_coding	protein_coding	protein_coding	1	147	2	4.13561	5.41921	6.70281	0.00338129	0.0017907	0.0371948	0.0213868
chr10	124757242	124757341	4779805	0	-	0.515152	(0.485,0.523]	chr10	456999	11	UTR3	UTR3:EXON_MRNA:INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000495711.2:ENST00000652548.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	71	2	4.8987	5.41888	5.93906	0.0129327	0.0113657	0.0778105	0.0723462
chr17	344217	344317	6821731	0	-	0.43	(0.419,0.45]	chr17	689629	29	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000577079.5:ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.18804	5.41854	5.64904	0.051668	0.00368884	0.148503	0.0348088
chr19	16367959	16368059	7343609	0	-	0.44	(0.419,0.45]	chr19	760668	56	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	67	2	5.18804	5.41854	5.64904	0.051668	0.00368884	0.148503	0.0348088
chr12	420624	420724	5148391	0	+	0.49	(0.485,0.523]	chr12	500517	16	INTRON	INTRON	CCDC77	ENSG00000120647.10	ENST00000540180.5:ENST00000422000.5:ENST00000543504.5:ENST00000540344.5:ENST00000412006.6:ENST00000239830.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	67	2	4.96239	5.41835	5.87431	0.0518747	0.00127835	0.148503	0.0168904
chr17	82183932	82184032	6988227	0	-	0.51	(0.485,0.523]	chr17	714632	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000327026.7:ENST00000392343.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	67	2	4.96239	5.41835	5.87431	0.0518747	0.00127835	0.148503	0.0168904
chr9	93513268	93513368	4183111	0	+	0.5	(0.485,0.523]	chr9	397626	140	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000375389.7:ENST00000446420.2	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	4.96239	5.41835	5.87431	0.0518747	0.00127835	0.148503	0.0168904
chr22	50424511	50424610	7754488	0	+	0.525253	(0.523,0.58]	chr22	812542	5	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9:ENST00000401672.7:ENST00000427222.2	protein_coding	protein_coding	protein_coding	protein_coding	1	172	2	3.92088	5.41833	6.91578	0.0106834	6.24234e-5	0.0701326	0.00192539
chr1	43558526	43558626	107024	0	+	0.66	(0.58,1]	chr1	13192	42	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	166	2	4.51752	5.41786	6.3182	0.00209278	1.74994e-4	0.0287557	0.00410754
chr1	1717853	1717951	382886	0	-	0.459184	(0.45,0.485]	chr1	43594	10	INTRON	INTRON	CDK11A:ENSG00000268575	ENSG00000008128.23:ENSG00000268575.1	ENST00000404249.8:ENST00000356200.7:ENST00000598846.1:ENST00000357760.6:ENST00000358779.9:ENST00000378633.5:ENST00000460465.5:ENST00000509982.5:ENST00000378638.6:ENST00000356937.7:ENST00000479362.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	0	67	2	5.00859	5.417745	5.8269	0.052901	0.00167585	0.14912	0.0203806
chr7	79310772	79310872	3625104	0	-	0.42	(0.419,0.45]	chr7	349228	3020	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000628997.1:ENST00000636424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	68	2	5.04043	5.41738	5.79433	0.0625897	0.00262626	0.160305	0.0278348
chr18	7783665	7783765	7007098	0	+	0.5	(0.485,0.523]	chr18	716113	90	INTRON	INTRON	PTPRM	ENSG00000173482.17	ENST00000332175.12:ENST00000580170.6:ENST00000400053.8:ENST00000400060.8	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	4.68434	5.41714	6.14994	0.0200045	0.00788098	0.100864	0.059464500000000003
chr15	82209217	82209317	6339359	0	-	0.39	(0.36,0.39]	chr15	624925	434	INTRON	INTRON	EFL1	ENSG00000140598.16	ENST00000359445.8:ENST00000696330.1:ENST00000268206.12:ENST00000696336.1:ENST00000650113.1:ENST00000561389.2:ENST00000696337.1:ENST00000696329.1:ENST00000557939.2:ENST00000561331.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	68	2	4.99672	5.4171	5.83748	0.0604395	0.00213426	0.158506	0.0240825
chr6	131241672	131241772	3006373	0	+	0.39	(0.36,0.39]	chr6	293985	215	INTRON	INTRON	AKAP7	ENSG00000118507.18	ENST00000431975.7:ENST00000683794.1:ENST00000541650.5:ENST00000535150.1:ENST00000537868.5:ENST00000263050.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	68	2	4.99672	5.4171	5.83748	0.0604395	0.00213426	0.158506	0.0240825
chr20	38427039	38427129	7561096	0	-	0.477778	(0.45,0.485]	chr20	789769	7	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000671309.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	5	848	2	5.38632	5.41709	5.44786	2.87314e-4	4.29908e-6	0.00964028	2.82921e-4
chr18	77131438	77131538	7181637	0	-	0.68	(0.58,1]	chr18	730195	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	74	2	4.66416	5.416805	6.16945	0.0144381	0.00387582	0.0833845	0.0401256
chr19	58325561	58325661	7412920	0	-	0.45	(0.419,0.45]	chr19	772004	2	SS3_PROX	SS3_PROX:INTRON	ENSG00000283103	ENSG00000283103.4	ENST00000664481.1:ENST00000634676.2:ENST00000659246.1:ENST00000671228.1:ENST00000658331.1:ENST00000669883.1:ENST00000651375.3:ENST00000669440.2:ENST00000666049.1:ENST00000687313.1	lncRNA	lncRNA	lncRNA	lncRNA	0	70	2	4.87598	5.416745000000001	5.95751	0.0768574	0.0017735	0.174882	0.02121
chr20	13527532	13527632	7526830	0	-	0.44	(0.419,0.45]	chr20	785597	438	INTRON	INTRON	TASP1	ENSG00000089123.16	ENST00000480436.5:ENST00000337743.9:ENST00000465381.5:ENST00000455532.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	70	2	4.87598	5.416745000000001	5.95751	0.0768574	0.0017735	0.174882	0.02121
chr9	129610274	129610373	4250933	0	+	0.828283	(0.58,1]	chr9	404743	7	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.20223	5.416705	5.63118	0.0109983	0.00411607	0.0708586	0.0374453
chr22	42956684	42956784	7823698	0	-	0.51	(0.485,0.523]	chr22	820622	98	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000407585.5:ENST00000402229.5:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5:ENST00000453079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	65	2	5.39869	5.41661	5.43453	0.0258944	0.00421243	0.109555	0.0380601
chr2	134143479	134143579	895665	0	+	0.5	(0.485,0.523]	chr2	101196	159	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	144	2	4.63485	5.416510000000001	6.19817	0.00723584	4.03769e-4	0.0565323	0.00752123
chr17	77214217	77214314	6803116	0	+	0.381443	(0.36,0.39]	chr17	686684	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000585618.5:ENST00000436233.9:ENST00000443798.8:ENST00000591437.5:ENST00000431431.6:ENST00000588488.1:ENST00000587491.5:ENST00000588721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	67	2	5.1004	5.416455	5.73251	0.0526991	0.0027486	0.14912	0.028553
chr7	111227206	111227306	3684336	0	-	0.37	(0.36,0.39]	chr7	354615	2633	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	67	2	5.1004	5.416455	5.73251	0.0526991	0.0027486	0.14912	0.028553
chr6	163438702	163438802	3069944	0	+	0.43	(0.419,0.45]	chr6	298555	93	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000537124.5:ENST00000545346.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	153	2	4.54948	5.415765	6.28205	0.0102557	7.67962e-4	0.0684871	0.0118316
chr12	3226446	3226546	5160041	0	+	0.47	(0.45,0.485]	chr12	501358	107	INTRON	INTRON	TSPAN9	ENSG00000011105.14	ENST00000537971.5:ENST00000444315.6:ENST00000011898.10:ENST00000649909.1:ENST00000640568.1:ENST00000407263.2:ENST00000431374.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	73	2	4.81772	5.41539	6.01306	0.0167663	0.0113949	0.0917029	0.0723462
chr19	5817096	5817196	7195557	0	+	0.46	(0.45,0.485]	chr19	733105	113	INTRON	INTRON	NRTN	ENSG00000171119.3	ENST00000303212.3	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.28846	5.41516	5.54186	0.0243502	0.00612862	0.106588	0.0489549
chr4	888154	888252	2178484	0	-	0.653061	(0.58,1]	chr4	220626	25	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	63	2	5.11355	5.414915000000001	5.71628	0.0271806	0.00104668	0.112113	0.0146403
chr13	41829530	41829630	5698769	0	-	0.4	(0.39,0.419]	chr13	559196	98	INTRON	INTRON	VWA8	ENSG00000102763.18	ENST00000379310.8:ENST00000281496.6	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.26451	5.414845	5.56518	0.027797	0.00800901	0.112962	0.0580954
chr21	42847938	42848037	7675451	0	-	0.646465	(0.58,1]	chr21	802287	43	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	1	170	2	3.40767	5.414785	7.4219	0.0197265	4.42444e-6	0.0958249	2.8801e-4
chr5	177089757	177089793	2597786	0	+	0.583333	(0.58,1]	chr5	257897	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FGFR4	ENSG00000160867.15	ENST00000393648.6:ENST00000503708.5:ENST00000502906.5:ENST00000514472.1:ENST00000292408.9:ENST00000507708.1:ENST00000510911.5:ENST00000513166.1:ENST00000393637.5:ENST00000430285.5:ENST00000426612.5:ENST00000509511.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	156	2	3.97579	5.41445	6.85311	0.00655968	3.10807e-5	0.0536645	0.00115612
chr8	143323598	143323698	4095564	0	-	0.64	(0.58,1]	chr8	389126	2	SS5_PROX	SS5_PROX:INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	156	2	3.97579	5.41445	6.85311	0.00655968	3.10807e-5	0.0536645	0.00115612
chr5	139578387	139578487	2549119	0	+	0.45	(0.419,0.45]	chr5	253120	156	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	234	2	3.12949	5.414345	7.6992	0.00887283	8.67988e-4	0.0618231	0.0175702
chr17	29083528	29083626	6875935	0	-	0.530612	(0.523,0.58]	chr17	697789	7	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000529578.5:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000546105.5:ENST00000527312.5:ENST00000531438.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	72	2	4.83424	5.414275	5.99431	0.0144272	0.0104033	0.0833845	0.0686837
chr10	79223072	79223172	4533592	0	+	0.61	(0.58,1]	chr10	432457	64	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.31036	5.414245	5.51813	0.013519	0.00312721	0.0792526	0.0311915
chr17	17735753	17735853	6689393	0	+	0.57	(0.523,0.58]	chr17	671344	112	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.35452	5.41417	5.47382	0.0244797	0.00453096	0.106683	0.0400651
chr1	3892259	3892355	386344	0	-	0.677083	(0.58,1]	chr1	44329	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C1orf174	ENSG00000198912.12	ENST00000474140.1:ENST00000486765.5:ENST00000361605.4:ENST00000679703.1:ENST00000680054.1:ENST00000680279.1:ENST00000681823.1:ENST00000679946.1:ENST00000680169.1:ENST00000680535.1:ENST00000679929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	66	2	4.82753	5.414160000000001	6.00079	0.0427798	4.59827e-4	0.13762	0.00821903
chr17	55313428	55313528	6757598	0	+	0.39	(0.36,0.39]	chr17	681718	241	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	335	2	3.14455	5.41411	7.68367	0.00227273	7.02479e-4	0.0251778	0.015621
chr16	89292697	89292796	6659732	0	-	0.626263	(0.58,1]	chr16	666648	5	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	186	2	4.56209	5.414035	6.26598	0.00318361	7.02009e-5	0.0360488	0.00210949
chr13	98212719	98212819	5634356	0	+	0.43	(0.419,0.45]	chr13	553467	1	SS3_PROX	SS3_PROX:INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000600648.1:ENST00000596580.2:ENST00000376581.9:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	72	2	4.91849	5.4137900000000005	5.90909	0.0184411	0.0174488	0.0928044	0.0927235
chr2	148071467	148071566	913870	0	+	0.363636	(0.36,0.39]	chr2	102540	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000473478.5:ENST00000635796.1:ENST00000637997.1:ENST00000470063.5:ENST00000638043.2:ENST00000638090.1:ENST00000637445.1:ENST00000636620.1:ENST00000478804.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	5.33106	5.41374	5.49642	0.0383628	0.00476539	0.131324	0.0414441
chr3	45003391	45003487	1457672	0	+	0.4375	(0.419,0.45]	chr3	155643	13	INTRON	INTRON	EXOSC7	ENSG00000075914.13	ENST00000461361.5:ENST00000482004.5:ENST00000265564.8:ENST00000468667.5:ENST00000491476.5:ENST00000481405.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	69	2	4.9329	5.41367	5.89444	0.0716557	0.00206691	0.168159	0.0235758
chr11	33308509	33308609	4838000	0	+	0.42	(0.419,0.45]	chr11	462597	206	INTRON	INTRON	HIPK3	ENSG00000110422.12	ENST00000525975.5:ENST00000303296.9:ENST00000379016.7:ENST00000456517.2	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.1405	5.4136299999999995	5.68676	0.0550015	0.00338051	0.153337	0.0328791
chr1	51430952	51431052	480942	0	-	0.34	(0.33,0.36]	chr1	56938	87	INTRON	INTRON	EPS15	ENSG00000085832.17	ENST00000371733.8:ENST00000371730.6	protein_coding	protein_coding	protein_coding	protein_coding	1	147	2	4.24785	5.413589999999999	6.57933	0.00441125	0.00145711	0.0430586	0.0184991
chr9	69247165	69247259	4165559	0	+	0.329787	(0.29,0.33]	chr9	395895	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TJP2	ENSG00000119139.21	ENST00000648087.1:ENST00000636438.1:ENST00000377245.9:ENST00000348208.9:ENST00000649114.1:ENST00000649943.1:ENST00000636247.1:ENST00000650333.1:ENST00000650522.1:ENST00000649783.1:ENST00000535702.6:ENST00000649134.1:ENST00000539225.2:ENST00000650084.1:ENST00000650460.1:ENST00000648042.1:ENST00000649927.1:ENST00000498204.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	65	2	5.34562	5.413345	5.48107	0.0222022	0.00501126	0.101857	0.0429092
chr3	65865014	65865114	1814125	0	-	0.38	(0.36,0.39]	chr3	187296	1445	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	66	2	5.28778	5.413164999999999	5.53855	0.0407706	0.00432809	0.135868	0.0389438
chr13	113052206	113052306	5656157	0	+	0.45	(0.419,0.45]	chr13	555181	3	SS3_PROX	SS3_PROX:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	67	2	5.30548	5.413105	5.52073	0.0327198	0.00792071	0.122543	0.057762
chr7	129662358	129662458	3478609	0	+	0.43	(0.419,0.45]	chr7	336212	44	INTRON	INTRON	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000454688.5:ENST00000223190.8:ENST00000311967.6:ENST00000393230.6:ENST00000353868.5	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.30548	5.413105	5.52073	0.0327198	0.00792071	0.122543	0.057762
chr16	22445426	22445526	6422256	0	+	0.51	(0.485,0.523]	chr16	635236	73	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000446662.5:ENST00000381231.5:ENST00000309865.11:ENST00000691795.1:ENST00000308347.10:ENST00000687936.1:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	65	2	5.17012	5.413065	5.65601	0.038581	0.00224147	0.131324	0.024843
chr10	74184478	74184578	4512016	0	+	0.52	(0.485,0.523]	chr10	431912	72	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000478611.2:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	65	2	5.35096	5.412604999999999	5.47425	0.0243396	0.0047171	0.106588	0.0413976
chr9	123461023	123461121	4397184	0	-	0.520408	(0.485,0.523]	chr9	419644	28	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1:ENST00000479305.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	65	2	5.35096	5.412604999999999	5.47425	0.0243396	0.0047171	0.106588	0.0413976
chr6	52680820	52680918	2926988	0	+	0.438776	(0.419,0.45]	chr6	288209	33	INTRON	INTRON	TMEM14A	ENSG00000096092.6	ENST00000211314.5	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	5.09718	5.41256	5.72794	0.0242188	0.012235	0.106588	0.0757339
chr19	2441317	2441417	7309599	0	-	0.6	(0.58,1]	chr19	753890	24	INTRON	INTRON	LMNB2	ENSG00000176619.13	ENST00000325327.4	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.02314	5.41252	5.8019	0.007984	0.00638322	0.0596361	0.0501889
chr5	74824868	74824968	2692305	0	-	0.38	(0.36,0.39]	chr5	265977	105	INTRON	INTRON	FAM169A	ENSG00000198780.13	ENST00000389156.9:ENST00000510496.5:ENST00000687041.1:ENST00000514215.5:ENST00000510609.5:ENST00000513277.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	201	2	4.05329	5.41236	6.77143	0.00377816	7.99596e-4	0.0396337	0.0121528
chr14	31391577	31391676	5954183	0	-	0.414141	(0.39,0.419]	chr14	583538	22	INTRON	INTRON	HEATR5A:ENSG00000203546	ENSG00000129493.15:ENSG00000203546.7	ENST00000543095.7:ENST00000549185.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	66	2	5.37172	5.41209	5.45246	0.0367885	0.00529344	0.129052	0.044517
chr4	23795138	23795236	2208639	0	-	0.408163	(0.39,0.419]	chr4	223244	33	UTR3	UTR3:EXON_MRNA:INTRON	PPARGC1A	ENSG00000109819.9	ENST00000509702.5:ENST00000264867.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	5.37172	5.41209	5.45246	0.0367885	0.00529344	0.129052	0.044517
chr7	100634650	100634749	3654953	0	-	0.545455	(0.523,0.58]	chr7	352299	7	INTRON	INTRON	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	66	2	5.20104	5.41181	5.62258	0.0193313	0.00648051	0.0954446	0.0503748
chr10	79166627	79166727	4533023	0	+	0.47	(0.45,0.485]	chr10	432438	41	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	4.95056	5.411495	5.87243	0.0143887	0.0127826	0.0821732	0.0773423
chr16	85378141	85378241	6516852	0	+	0.67	(0.58,1]	chr16	646391	188	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	4.58025	5.4113500000000005	6.24245	0.0172566	0.00334087	0.0923809	0.0368376
chr5	131533231	131533331	2756295	0	-	0.31	(0.29,0.33]	chr5	270123	3	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	66	2	5.19216	5.411	5.62984	0.0174273	0.00712176	0.0901531	0.0541241
chr2	3194951	3195046	1080045	0	-	0.536842	(0.523,0.58]	chr2	117589	4	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000482570.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	69	2	4.78384	5.4107	6.03756	0.0663135	7.92905e-4	0.162385	0.0120621
chr13	50413629	50413724	5596749	0	+	0.589474	(0.58,1]	chr13	551623	1	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000485007.5:ENST00000475913.5:ENST00000469127.5:ENST00000470726.7:ENST00000479420.5:ENST00000474630.6:ENST00000491482.5:ENST00000647700.1:ENST00000484869.6:ENST00000469095.6	lncRNA	lncRNA	lncRNA	lncRNA	0	65	2	5.08534	5.41068	5.73602	0.00904546	0.00549379	0.0637469	0.0454065
chr14	68088541	68088641	5861748	0	+	0.47	(0.45,0.485]	chr14	572986	185	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5:ENST00000557045.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	68	2	5.0722	5.410665	5.74913	0.017574	0.00988295	0.0906595	0.0664239
chr20	271367	271467	7511400	0	-	0.48	(0.45,0.485]	chr20	783925	1	SS3_PROX	SS3_PROX:INTRON	C20orf96	ENSG00000196476.12	ENST00000400269.4:ENST00000360321.7:ENST00000382369.9	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.0722	5.410665	5.74913	0.017574	0.00988295	0.0906595	0.0664239
chr1	29238114	29238214	78389	0	+	0.58	(0.523,0.58]	chr1	8914	10	INTRON	INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2	protein_coding	protein_coding	protein_coding	protein_coding	1	144	2	4.69632	5.410550000000001	6.12478	0.00829271	3.26856e-4	0.0610772	0.00645438
chr7	75935406	75935506	3396809	0	+	0.51	(0.485,0.523]	chr7	328054	121	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000449920.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	66	2	5.19749	5.410245	5.623	0.0192139	0.00672953	0.095424900000000007	0.0519464
chr2	70033224	70033323	1178306	0	-	0.444444	(0.419,0.45]	chr2	128194	12	EXON_LNCRNA	EXON_LNCRNA:INTRON	PCBP1-AS1	ENSG00000179818.16	ENST00000419542.5:ENST00000682294.1:ENST00000684630.1:ENST00000630975.3:ENST00000435880.6:ENST00000629339.3:ENST00000667874.1:ENST00000628659.2:ENST00000628308.2:ENST00000626515.2:ENST00000625447.2:ENST00000628305.2:ENST00000625625.2:ENST00000625864.2:ENST00000630522.2:ENST00000628837.2:ENST00000627325.2:ENST00000629084.2:ENST00000629603.2:ENST00000625215.2:ENST00000627189.2:ENST00000629836.2:ENST00000626898.2:ENST00000628883.2:ENST00000629533.2:ENST00000627181.2:ENST00000630214.2:ENST00000627918.2:ENST00000628374.2:ENST00000627327.2:ENST00000626495.2:ENST00000629605.2:ENST00000626370.2:ENST00000626842.2:ENST00000630457.2:ENST00000629184.2:ENST00000628551.2:ENST00000630746.2:ENST00000627398.2:ENST00000457076.5:ENST00000625783.2:ENST00000625490.2:ENST00000627050.2:ENST00000630759.2:ENST00000628667.2:ENST00000626632.2:ENST00000631110.2:ENST00000626609.2:ENST00000629506.2:ENST00000630985.2:ENST00000413436.5:ENST00000628147.2:ENST00000631107.2:ENST00000629415.2:ENST00000418564.5:ENST00000630280.2:ENST00000415222.5:ENST00000628322.2:ENST00000626440.2:ENST00000665708.1:ENST00000655086.1:ENST00000420309.6:ENST00000627487.3:ENST00000670036.1:ENST00000655096.1:ENST00000685127.1:ENST00000684907.1:ENST00000685079.1:ENST00000687866.1:ENST00000692564.1:ENST00000686517.1:ENST00000689138.1:ENST00000688056.1:ENST00000594376.6:ENST00000692333.1:ENST00000688045.1:ENST00000657291.1:ENST00000691987.1:ENST00000664483.1:ENST00000601431.6:ENST00000685803.1:ENST00000690200.1:ENST00000686800.1:ENST00000684857.1:ENST00000627037.2:ENST00000629212.2:ENST00000688473.1:ENST00000456161.5:ENST00000627074.2:ENST00000419963.5:ENST00000625227.2:ENST00000599673.5:ENST00000629407.2:ENST00000612430.3:ENST00000418308.5:ENST00000630283.2:ENST00000629178.2:ENST00000627542.2:ENST00000626574.2:ENST00000596028.5:ENST00000629485.2:ENST00000630685.2:ENST00000452431.5:ENST00000629374.2:ENST00000423402.5:ENST00000411429.5:ENST00000629188.2:ENST00000434781.5:ENST00000626162.2:ENST00000654878.1:ENST00000659586.1:ENST00000457770.6:ENST00000415742.5:ENST00000627540.2:ENST00000628263.2:ENST00000657575.2:ENST00000689275.1:ENST00000687961.1:ENST00000693279.1:ENST00000416395.6:ENST00000692733.1:ENST00000654336.1:ENST00000686055.1:ENST00000626509.3:ENST00000425601.6:ENST00000666075.1:ENST00000653064.1:ENST00000656326.1:ENST00000668711.1:ENST00000665172.1:ENST00000630520.3:ENST00000663209.1:ENST00000659305.1:ENST00000654601.1:ENST00000663375.1:ENST00000654958.1:ENST00000665838.1:ENST00000653606.1:ENST00000659941.1:ENST00000669583.1:ENST00000660903.1:ENST00000653596.1:ENST00000656308.1:ENST00000449178.6:ENST00000625955.3:ENST00000655140.1:ENST00000661989.1:ENST00000664419.1:ENST00000670785.1:ENST00000664773.1:ENST00000661703.1:ENST00000658454.1:ENST00000664049.1:ENST00000655058.1:ENST00000366234.7:ENST00000599427.5:ENST00000597318.5:ENST00000625518.2:ENST00000425333.5:ENST00000429599.6:ENST00000432604.5:ENST00000421843.5:ENST00000458686.5:ENST00000421255.5:ENST00000413069.5:ENST00000627019.1	lncRNA	lncRNA	lncRNA	lncRNA	1	185	2	3.741	5.410235	7.07947	0.0188635	9.14728e-5	0.0941462	0.00255616
chr5	176246343	176246443	2594777	0	+	0.42	(0.419,0.45]	chr5	257479	69	INTRON	INTRON	SIMC1	ENSG00000170085.18	ENST00000443967.5:ENST00000430704.6:ENST00000341199.10:ENST00000495423.1:ENST00000429602.7:ENST00000508769.1:ENST00000467472.1:ENST00000514128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	209	2	4.60891	5.410209999999999	6.21151	0.00435333	9.41863e-4	0.0427656	0.0135546
chr1	153611577	153611674	591009	0	-	0.340206	(0.33,0.36]	chr1	68765	24	INTRON	INTRON	S100A16	ENSG00000188643.11	ENST00000368706.9:ENST00000474991.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	67	2	5.00642	5.410165	5.81391	0.0542065	0.00200357	0.151733	0.0230381
chr12	23703720	23703820	5386053	0	-	0.38	(0.36,0.39]	chr12	528148	378	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000537393.5:ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000535530.5:ENST00000536629.5:ENST00000536911.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	69	2	4.885	5.410165	5.93533	0.0697729	0.00167855	0.167185	0.0203806
chr2	210454107	210454207	1366681	0	-	0.39	(0.36,0.39]	chr2	145454	123	INTRON	INTRON	LANCL1	ENSG00000115365.12	ENST00000441020.7:ENST00000443314.5:ENST00000450366.7:ENST00000233714.8:ENST00000431941.6:ENST00000448951.5	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	4.7639	5.41008	6.05626	0.0811309	0.00124043	0.177951	0.0165207
chr14	95318414	95318513	6048833	0	-	0.606061	(0.58,1]	chr14	593433	108	INTRON	INTRON	CLMN	ENSG00000165959.12	ENST00000298912.9:ENST00000553733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	68	2	4.6951	5.40977	6.12444	0.0521567	3.17437e-4	0.148503	0.00632787
chr4	20703421	20703511	2017662	0	+	0.455556	(0.45,0.485]	chr4	206280	3	INTRON	INTRON	PACRGL	ENSG00000163138.19	ENST00000471979.6:ENST00000360916.9:ENST00000510051.5:ENST00000295290.12:ENST00000514485.5:ENST00000444671.6:ENST00000503585.6:ENST00000502374.5:ENST00000508952.5:ENST00000513861.5:ENST00000515339.5:ENST00000509469.5:ENST00000514663.5:ENST00000506745.5:ENST00000506702.5:ENST00000502938.5:ENST00000513590.5:ENST00000514292.5:ENST00000504630.5:ENST00000511160.5:ENST00000506951.5:ENST00000507634.5:ENST00000503747.5:ENST00000513459.5:ENST00000467997.6:ENST00000511089.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	65	2	5.34301	5.409744999999999	5.47648	0.0328801	0.0039628	0.122593	0.0368027
chr12	50426862	50426962	5228902	0	+	0.53	(0.523,0.58]	chr12	507611	56	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.02927	5.409255	5.78924	0.0147166	0.0095202	0.0826843	0.0650078
chr17	64796077	64796175	6949534	0	-	0.571429	(0.523,0.58]	chr17	709067	32	INTRON	INTRON	PLEKHM1P1	ENSG00000214176.10	ENST00000578036.5:ENST00000582986.5:ENST00000582201.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	68	2	5.02927	5.409255	5.78924	0.0147166	0.0095202	0.0826843	0.0650078
chr14	54625891	54625991	5820032	0	+	0.44	(0.419,0.45]	chr14	569049	574	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	191	2	4.26314	5.409195	6.55525	0.0079416	3.84925e-4	0.0596361	0.00726694
chr7	6701799	6701897	3542731	0	-	0.367347	(0.36,0.39]	chr7	342318	10	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	2	250	2	3.68789	5.409185	7.13048	0.00918214	6.69803e-5	0.0643562	0.00203052
chr16	52539347	52539447	6589783	0	-	0.34	(0.33,0.36]	chr16	658709	194	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	391	2	5.11284	5.408925	5.70501	0.00127976	2.189e-5	0.0218101	8.99734e-4
chr17	54992551	54992651	6755269	0	+	0.38	(0.36,0.39]	chr17	681598	8	INTRON	INTRON	STXBP4	ENSG00000166263.13	ENST00000376352.6:ENST00000405898.5:ENST00000434978.6:ENST00000398391.6	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.04949	5.40892	5.76835	0.0563927	0.00252253	0.154188	0.0270357
chr11	70812867	70812967	5062412	0	-	0.46	(0.45,0.485]	chr11	492713	53	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	5.06138	5.408715	5.75605	0.0492008	0.002004	0.146142	0.0230381
chr12	132537447	132537547	5352990	0	+	0.47	(0.45,0.485]	chr12	523670	91	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.06138	5.408715	5.75605	0.0492008	0.002004	0.146142	0.0230381
chr5	31541111	31541180	2396377	0	+	0.463768	(0.45,0.485]	chr5	239180	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C5orf22	ENSG00000082213.18	ENST00000510659.5:ENST00000513967.5:ENST00000325366.14:ENST00000504464.5:ENST00000510530.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	66	2	5.06138	5.408715	5.75605	0.0492008	0.002004	0.146142	0.0230381
chr12	102204680	102204780	5310243	0	+	0.47	(0.45,0.485]	chr12	517269	72	EXON_LNCRNA	EXON_LNCRNA	HELLPAR	ENSG00000281344.1	ENST00000626826.1	lncRNA	lncRNA	lncRNA	lncRNA	0	65	2	5.38503	5.408375	5.43172	0.0308908	0.00440365	0.119556	0.0393688
chr9	94184344	94184444	4185699	0	+	0.46	(0.45,0.485]	chr9	397907	5	INTRON	INTRON	MIRLET7A1HG	ENSG00000269929.4	ENST00000652620.1:ENST00000602703.1:ENST00000660581.1	lncRNA	lncRNA	lncRNA	lncRNA	0	65	2	5.38503	5.408375	5.43172	0.0308908	0.00440365	0.119556	0.0393688
chr21	44030195	44030294	7625850	0	+	0.373737	(0.36,0.39]	chr21	796980	173	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	66	2	5.19713	5.40821	5.61929	0.0462258	0.00359045	0.143138	0.0342681
chr3	128494716	128494815	1563243	0	+	0.535354	(0.523,0.58]	chr3	165331	43	INTRON	INTRON	GATA2-AS1	ENSG00000244300.3	ENST00000464242.1:ENST00000468377.1:ENST00000669945.1	lncRNA	lncRNA	lncRNA	lncRNA	0	70	2	4.71922	5.4079999999999995	6.09678	0.0721601	6.74499e-4	0.168159	0.0108081
chr19	58327314	58327414	7301069	0	+	0.65	(0.58,1]	chr19	752037	2	SS5_PROX	SS5_PROX:INTRON	ZSCAN22	ENSG00000182318.6	ENST00000329665.5	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.0607	5.4078800000000005	5.75506	0.029633	9.38062e-4	0.116079	0.0135546
chr7	111114131	111114231	3683205	0	-	0.34	(0.33,0.36]	chr7	354615	1502	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	5.27557	5.407615	5.53966	0.0251076	0.00707628	0.107672	0.0540197
chr8	106022390	106022490	4037937	0	-	0.34	(0.33,0.36]	chr8	385453	943	INTRON	INTRON	ZFPM2-AS1	ENSG00000251003.9	ENST00000520433.5:ENST00000524045.6:ENST00000520594.5:ENST00000509144.2:ENST00000520078.5:ENST00000521622.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	66	2	5.27557	5.407615	5.53966	0.0251076	0.00707628	0.107672	0.0540197
chr2	232898881	232898980	1383827	0	-	0.454545	(0.45,0.485]	chr2	147952	36	INTRON	INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000416114.3:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	67	2	4.9538	5.40743	5.86106	0.0569772	0.00153611	0.154343	0.0191553
chr9	34202653	34202752	4140962	0	+	0.414141	(0.39,0.419]	chr9	393819	109	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2	protein_coding	protein_coding	protein_coding	protein_coding	1	182	2	3.69844	5.407255	7.11607	0.0188868	7.0555e-5	0.0942524	0.00211635
chr15	34172661	34172760	6215578	0	-	0.414141	(0.39,0.419]	chr15	611939	62	INTRON	INTRON	KATNBL1	ENSG00000134152.11	ENST00000256544.8:ENST00000560247.5:ENST00000540594.5:ENST00000560671.5:ENST00000557877.5:ENST00000559462.1:ENST00000560108.5:ENST00000559515.1:ENST00000559464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	66	2	5.19579	5.407254999999999	5.61872	0.0469937	0.00361685	0.143232	0.0342681
chr4	15628725	15628821	2202756	0	-	0.395833	(0.39,0.419]	chr4	222753	3	INTRON	INTRON	FBXL5	ENSG00000118564.15	ENST00000341285.8:ENST00000412094.6:ENST00000511441.5:ENST00000513163.5:ENST00000507700.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	67	2	5.21344	5.407195	5.60095	0.0263614	0.00893514	0.110638	0.0620271
chr17	43545315	43545414	6739018	0	+	0.656566	(0.58,1]	chr17	678633	1	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	3	210	2	3.61776	5.407185	7.19661	7.08521e-4	4.22825e-4	0.011772	0.0111867
chr19	1172328	1172427	7305776	0	-	0.656566	(0.58,1]	chr19	753058	33	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.25731	5.4070599999999995	5.55681	0.0126042	0.00358178	0.0761905	0.0342681
chr20	32226370	32226470	7454960	0	+	0.41	(0.39,0.419]	chr20	776030	86	INTRON	INTRON	POFUT1	ENSG00000101346.14	ENST00000375749.8:ENST00000486717.5:ENST00000465791.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	149	2	4.21021	5.40698	6.60375	0.00520388	0.00174477	0.0475031	0.0210473
chr16	84735675	84735774	6514186	0	+	0.393939	(0.39,0.419]	chr16	646283	18	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	66	2	5.36155	5.4068950000000005	5.45224	0.032783	0.00648185	0.122593	0.0503748
chrX	72551040	72551140	8064008	0	-	0.41	(0.39,0.419]	chrX	841411	554	INTRON	INTRON	HDAC8	ENSG00000147099.21	ENST00000373583.6:ENST00000373573.9:ENST00000648452.1:ENST00000649097.1:ENST00000647886.1:ENST00000648855.1:ENST00000647654.1:ENST00000648939.1:ENST00000648504.1:ENST00000648459.1:ENST00000373589.9:ENST00000650604.1:ENST00000647594.1:ENST00000647980.1:ENST00000647859.1:ENST00000648731.1:ENST00000649181.1:ENST00000649274.1:ENST00000650471.1:ENST00000647641.1:ENST00000649543.1:ENST00000373568.7:ENST00000648139.1:ENST00000648834.1:ENST00000648711.1:ENST00000436675.6:ENST00000647606.1:ENST00000415409.6:ENST00000478743.2:ENST00000648298.1:ENST00000648870.1:ENST00000649116.1:ENST00000649752.1:ENST00000647718.1:ENST00000649242.1:ENST00000649518.1:ENST00000648285.1:ENST00000412342.6:ENST00000373571.6:ENST00000439122.7:ENST00000648962.1:ENST00000650126.1:ENST00000648036.1:ENST00000647974.1:ENST00000373560.7:ENST00000373559.8:ENST00000648577.1:ENST00000421523.6:ENST00000648101.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	66	2	5.36155	5.4068950000000005	5.45224	0.032783	0.00648185	0.122593	0.0503748
chr10	119393998	119394098	4595189	0	+	0.57	(0.523,0.58]	chr10	439179	127	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.08882	5.406845000000001	5.72487	0.0163679	0.00834774	0.0875379	0.0598672
chr13	113052406	113052506	5656159	0	+	0.56	(0.523,0.58]	chr13	555182	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	67	2	5.08882	5.406845000000001	5.72487	0.0163679	0.00834774	0.0875379	0.0598672
chr12	132543420	132543520	5353050	0	+	0.64	(0.58,1]	chr12	523670	151	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	135	2	4.0743	5.406815	6.73933	0.00136577	0.00116939	0.0206836	0.0176851
chr5	59813421	59813521	2672275	0	-	0.44	(0.419,0.45]	chr5	264372	159	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000502484.6:ENST00000405053.7:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	67	2	5.25615	5.40677	5.55739	0.0310506	0.00879729	0.119758	0.0615125
chr18	6042440	6042540	7110135	0	-	0.54	(0.523,0.58]	chr18	723828	98	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000400105.6:ENST00000317931.12:ENST00000400104.7	protein_coding	protein_coding	protein_coding	protein_coding	1	156	2	3.72444	5.406745	7.08905	0.00470358	0.00137158	0.0413976	0.0226056
chr6	36096165	36096264	2904992	0	+	0.535354	(0.523,0.58]	chr6	284939	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	173	2	4.16749	5.40637	6.64525	0.00680947	1.40789e-4	0.0548177	0.00351181
chr10	103771359	103771458	4757817	0	-	0.474747	(0.45,0.485]	chr10	454813	38	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.12938	5.40634	5.6833	0.0195193	0.00873194	0.0955413	0.0612699
chr3	129465092	129465192	1566560	0	+	0.48	(0.45,0.485]	chr3	165800	3	SS5_PROX	SS5_PROX:INTRON	IFT122	ENSG00000163913.14	ENST00000693654.1:ENST00000687461.1:ENST00000440957.7:ENST00000688129.1:ENST00000689313.1:ENST00000689801.1:ENST00000691583.1:ENST00000347300.6:ENST00000685282.1:ENST00000692242.1:ENST00000687377.1:ENST00000693489.1:ENST00000687645.1:ENST00000689643.1:ENST00000688970.1:ENST00000512157.6:ENST00000692228.1:ENST00000693114.1:ENST00000690862.1:ENST00000689332.1:ENST00000685921.1:ENST00000691770.1:ENST00000692985.1:ENST00000685447.1:ENST00000693162.1:ENST00000692391.1:ENST00000686531.1:ENST00000693129.1:ENST00000689796.1:ENST00000685939.1:ENST00000686830.1:ENST00000687791.1:ENST00000686473.1:ENST00000690723.1:ENST00000689871.1:ENST00000688504.1:ENST00000691964.1:ENST00000686375.1:ENST00000691733.1:ENST00000691705.1:ENST00000690209.1:ENST00000687864.1:ENST00000689819.1:ENST00000296266.7:ENST00000689492.1:ENST00000687398.1:ENST00000690663.1:ENST00000693588.1:ENST00000690677.1:ENST00000688664.1:ENST00000431818.8:ENST00000507564.5:ENST00000693233.1:ENST00000504021.6:ENST00000348417.7:ENST00000692901.1:ENST00000515783.6:ENST00000688020.1:ENST00000512220.5:ENST00000349441.6:ENST00000689005.1:ENST00000691641.1:ENST00000692321.1:ENST00000685087.1:ENST00000692728.1:ENST00000691360.1:ENST00000685189.1:ENST00000687766.1:ENST00000687845.1:ENST00000692508.1:ENST00000506507.5:ENST00000509815.1:ENST00000690617.1:ENST00000685811.1:ENST00000689384.1:ENST00000688392.1:ENST00000688266.1:ENST00000511498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	154	2	3.82378	5.4060299999999994	6.98828	0.0039984	0.00198597	0.0370532	0.0279914
chr20	36856681	36856781	7557068	0	-	0.46	(0.45,0.485]	chr20	789155	169	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.20906	5.40602	5.60298	0.0399616	0.00292492	0.133954	0.029882
chr22	42985637	42985736	7823989	0	-	0.464646	(0.45,0.485]	chr22	820626	259	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	65	2	5.20906	5.40602	5.60298	0.0399616	0.00292492	0.133954	0.029882
chr4	6299361	6299461	2010595	0	+	0.6	(0.58,1]	chr4	205141	38	INTRON	INTRON	WFS1	ENSG00000109501.15	ENST00000673991.1:ENST00000503569.5:ENST00000226760.5:ENST00000682275.1:ENST00000506362.2:ENST00000684087.1:ENST00000683395.1:ENST00000673642.1:ENST00000507765.1:ENST00000513395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	64	2	5.14497	5.405975	5.66698	0.0102927	0.00474658	0.0684871	0.0413976
chr11	72234715	72234815	4889423	0	+	0.48	(0.45,0.485]	chr11	471841	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	INPPL1	ENSG00000165458.15	ENST00000298229.7:ENST00000538751.5:ENST00000541303.5:ENST00000545355.5:ENST00000535985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	65	2	5.38553	5.4056999999999995	5.42587	0.0290571	0.00490471	0.116079	0.0422077
chr13	98452073	98452173	5747026	0	-	0.48	(0.45,0.485]	chr13	563284	70	UTR3	UTR3:EXON_MRNA	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000376554.8:ENST00000376547.7	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.38553	5.4056999999999995	5.42587	0.0290571	0.00490471	0.116079	0.0422077
chr11	64145558	64145658	5049033	0	-	0.64	(0.58,1]	chr11	490257	188	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	62	2	5.26138	5.4055800000000005	5.54978	0.021217	0.00165911	0.0996078	0.0202545
chr11	70744882	70744982	5061730	0	-	0.62	(0.58,1]	chr11	492701	270	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	5.26138	5.4055800000000005	5.54978	0.021217	0.00165911	0.0996078	0.0202545
chr4	3365091	3365191	2005087	0	+	0.67	(0.58,1]	chr4	204663	217	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	62	2	5.26138	5.4055800000000005	5.54978	0.021217	0.00165911	0.0996078	0.0202545
chr10	79166527	79166627	4533022	0	+	0.63	(0.58,1]	chr10	432438	40	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.35214	5.40543	5.45872	0.0181452	0.00211999	0.0921579	0.0239744
chr16	84737840	84737938	6514208	0	+	0.642857	(0.58,1]	chr16	646283	40	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	62	2	5.35214	5.40543	5.45872	0.0181452	0.00211999	0.0921579	0.0239744
chr7	74527043	74527142	3392104	0	+	0.626263	(0.58,1]	chr7	327389	25	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6:ENST00000476977.5:ENST00000489094.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	5.35214	5.40543	5.45872	0.0181452	0.00211999	0.0921579	0.0239744
chr8	141000279	141000378	4093134	0	-	0.686869	(0.58,1]	chr8	388934	158	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	62	2	5.35214	5.40543	5.45872	0.0181452	0.00211999	0.0921579	0.0239744
chr18	79358355	79358454	7099869	0	+	0.646465	(0.58,1]	chr18	722963	98	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000426216.6:ENST00000307671.12:ENST00000490210.6:ENST00000590477.5:ENST00000589951.5:ENST00000588921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	155	2	4.04904	5.404935	6.76083	0.0056478	4.22142e-5	0.0495171	0.0014546
chr3	58010255	58010355	1483056	0	+	0.58	(0.523,0.58]	chr3	159572	10	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	255	2	4.10552	5.404540000000001	6.70356	0.00331993	1.18392e-4	0.0368376	0.00311099
chr5	652587	652687	2378808	0	+	0.35	(0.33,0.36]	chr5	237647	2	SS3_PROX	SS3_PROX:INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	68	2	4.89468	5.4043600000000005	5.91404	0.0629186	0.00156051	0.160778	0.0194067
chr16	21493599	21493699	6564572	0	-	0.44	(0.419,0.45]	chr16	654775	56	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522480.5:ENST00000522841.6:ENST00000437413.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	66	2	5.27868	5.404135	5.52959	0.0457732	0.00484244	0.142336	0.0418176
chr22	35801398	35801498	7803547	0	-	0.44	(0.419,0.45]	chr22	817762	193	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000405409.6:ENST00000695803.1:ENST00000449924.6:ENST00000414461.6:ENST00000262829.11:ENST00000397303.6:ENST00000695804.1:ENST00000359369.8:ENST00000695805.1:ENST00000695806.1:ENST00000416721.6:ENST00000695807.1:ENST00000473487.6:ENST00000408983.2:ENST00000491982.1:ENST00000397305.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	66	2	5.27868	5.404135	5.52959	0.0457732	0.00484244	0.142336	0.0418176
chr8	47448840	47448940	3814114	0	+	0.42	(0.419,0.45]	chr8	367313	79	INTRON	INTRON	SPIDR	ENSG00000164808.17	ENST00000541342.2:ENST00000518074.5:ENST00000297423.9:ENST00000521550.5:ENST00000524126.5:ENST00000524141.5:ENST00000519661.5:ENST00000522117.5:ENST00000524033.5:ENST00000524006.5:ENST00000521214.5:ENST00000519401.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	66	2	5.27868	5.404135	5.52959	0.0457732	0.00484244	0.142336	0.0418176
chr9	6611946	6612046	4275128	0	-	0.45	(0.419,0.45]	chr9	408387	12	INTRON	INTRON	GLDC	ENSG00000178445.10	ENST00000321612.8:ENST00000639364.1:ENST00000639954.1:ENST00000640592.1:ENST00000639840.1:ENST00000639020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	66	2	5.36395	5.4040099999999995	5.44407	0.0407485	0.00585948	0.135868	0.0474117
chr2	54039759	54039859	795598	0	+	0.38	(0.36,0.39]	chr2	90708	645	INTRON	INTRON	ACYP2	ENSG00000170634.13	ENST00000458030.3:ENST00000422521.2:ENST00000607452.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	5.14958	5.4038	5.65802	0.0493212	0.003279	0.146207	0.0322062
chr6	154794508	154794608	3044727	0	+	0.25	[0,0.29]	chr6	296651	1	SS3_PROX	SS3_PROX:INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000367178.8	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.3888	5.40354	5.41828	0.0183035	0.00336232	0.0922556	0.0328612
chr17	82143476	82143576	6987808	0	-	0.64	(0.58,1]	chr17	714577	77	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000419322.6:ENST00000392346.6:ENST00000582040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	62	2	5.21377	5.403505	5.59324	0.0230012	0.0014734	0.102982	0.0185589
chr9	133916462	133916561	4429565	0	-	0.636364	(0.58,1]	chr9	423310	547	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	5.21377	5.403505	5.59324	0.0230012	0.0014734	0.102982	0.0185589
chr7	47523936	47524036	3589052	0	-	0.54	(0.523,0.58]	chr7	346138	166	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	173	2	4.18159	5.40343	6.62527	0.00663351	1.49357e-4	0.0540577	0.00367368
chr11	70813367	70813467	5062417	0	-	0.66	(0.58,1]	chr11	492713	58	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	5.39546	5.4032	5.41094	0.0168207	0.00240622	0.0884836	0.0261006
chr12	132510822	132510916	5352721	0	+	0.595745	(0.58,1]	chr12	523657	5	UTR3	UTR3:EXON_MRNA:INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1:ENST00000542061.2	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.39546	5.4032	5.41094	0.0168207	0.00240622	0.0884836	0.0261006
chr22	42987033	42987133	7824003	0	-	0.48	(0.45,0.485]	chr22	820626	273	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	145	2	4.59248	5.402715000000001	6.21295	0.00810629	5.11238e-4	0.0602166	0.00887014
chr3	111898110	111898210	1535939	0	+	0.47	(0.45,0.485]	chr3	162967	123	INTRON	INTRON	PHLDB2	ENSG00000144824.21	ENST00000393923.7:ENST00000412622.5:ENST00000431670.7:ENST00000498699.5:ENST00000477695.5:ENST00000393925.7:ENST00000481953.5:ENST00000478733.6	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	4.59225	5.4026	6.21295	0.0259502	0.00810629	0.116361	0.0602166
chr4	158829725	158829821	2157167	0	+	0.302083	(0.29,0.33]	chr4	218576	1	INTRON	INTRON	FNIP2	ENSG00000052795.13	ENST00000264433.11:ENST00000504704.6:ENST00000512986.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	77	2	4.59993	5.402495	6.20506	0.0243639	0.00641163	0.113231	0.0529785
chr16	81545081	81545181	6508744	0	+	0.62	(0.58,1]	chr16	645911	492	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	3	220	2	3.29081	5.40246	7.51411	0.00191512	2.03828e-4	0.0223591	0.0080616
chr9	124525073	124525173	4402887	0	-	0.45	(0.419,0.45]	chr9	419851	2	SS3_PROX	SS3_PROX:INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	4.81671	5.40238	5.98805	0.08258	0.00164584	0.179396	0.0202325
chr5	43046864	43046964	2413302	0	+	0.43	(0.419,0.45]	chr5	240659	14	INTRON	INTRON	ENSG00000215068	ENSG00000215068.9	ENST00000689235.1:ENST00000657793.1:ENST00000658237.1	lncRNA	lncRNA	lncRNA	lncRNA	0	66	2	5.23407	5.40229	5.57051	0.0486006	0.00441471	0.145074	0.0393688
chr6	128329705	128329805	3255261	0	-	0.45	(0.419,0.45]	chr6	315209	70	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000531050.5:ENST00000524534.5:ENST00000495748.5:ENST00000525459.1:ENST00000392449.4:ENST00000532751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	66	2	5.23407	5.40229	5.57051	0.0486006	0.00441471	0.145074	0.0393688
chr2	36435260	36435360	758434	0	+	0.52	(0.485,0.523]	chr2	87976	381	INTRON	INTRON	CRIM1	ENSG00000150938.10	ENST00000280527.7:ENST00000426856.1	protein_coding	protein_coding	protein_coding	protein_coding	1	147	2	3.95058	5.40223	6.85388	0.00268525	0.00214661	0.0291055	0.0282638
chr7	583810	583908	3523924	0	-	0.642857	(0.58,1]	chr7	340376	41	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000400758.6:ENST00000430040.5	protein_coding	protein_coding	protein_coding	protein_coding	1	130	2	4.47001	5.40219	6.33437	0.00276493	4.15967e-4	0.0332418	0.00768537
chr2	9307934	9308033	714095	0	+	0.484848	(0.45,0.485]	chr2	83385	101	INTRON	INTRON	ASAP2	ENSG00000151693.11	ENST00000315273.4:ENST00000281419.8	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.16149	5.402145	5.6428	0.0427653	0.00265386	0.13762	0.027979
chr10	132553858	132553958	4616999	0	+	0.54	(0.523,0.58]	chr10	441139	153	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.25403	5.402075	5.55012	0.0217068	0.00573579	0.100615	0.0467736
chr12	132954048	132954148	5542072	0	-	0.53	(0.523,0.58]	chr12	547064	54	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	65	2	5.25403	5.402075	5.55012	0.0217068	0.00573579	0.100615	0.0467736
chr22	46648322	46648421	7744661	0	+	0.525253	(0.523,0.58]	chr22	812052	100	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.25403	5.402075	5.55012	0.0217068	0.00573579	0.100615	0.0467736
chr7	100580773	100580873	3654724	0	-	0.45	(0.419,0.45]	chr7	352212	21	EXON_MRNA	EXON_MRNA:INTRON	LRCH4	ENSG00000077454.17	ENST00000310300.11:ENST00000467201.5:ENST00000497245.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	74	2	4.78575	5.402045	6.01834	0.0224633	0.015582500000000001	0.108193	0.0849828
chr17	72944528	72944628	6967734	0	-	0.45	(0.419,0.45]	chr17	710518	944	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	151	2	4.49987	5.401835	6.3038	0.00990101	8.76081e-4	0.0671959	0.0129542
chr6	127333553	127333652	3251497	0	-	0.333333	(0.33,0.36]	chr6	314978	13	INTRON	INTRON	ECHDC1	ENSG00000093144.19	ENST00000454859.8:ENST00000531967.5:ENST00000474289.6:ENST00000454591.6:ENST00000528402.5:ENST00000479525.6:ENST00000368291.6:ENST00000430841.6:ENST00000368289.6:ENST00000368292.10:ENST00000525745.5:ENST00000534442.5:ENST00000526299.5:ENST00000531582.1:ENST00000368287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	148	2	4.61628	5.401745	6.18721	0.00877878	5.36346e-4	0.0630845	0.0091711
chr11	70787250	70787350	5062154	0	-	0.58	(0.523,0.58]	chr11	492701	694	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	150	2	3.84801	5.401585	6.95516	0.00343547	0.00178078	0.0333396	0.0262315
chr6	31651763	31651861	3119040	0	-	0.561224	(0.523,0.58]	chr6	303154	1	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BAG6	ENSG00000204463.14	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.2:ENST00000375976.8:ENST00000362049.10:ENST00000439687.6:ENST00000437771.5:ENST00000435080.5:ENST00000456622.5:ENST00000452994.5:ENST00000434444.5:ENST00000428326.5:ENST00000451898.5:ENST00000433828.5:ENST00000424480.5:ENST00000424176.5:ENST00000441054.5:ENST00000456286.5:ENST00000454165.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	189	2	3.79284	5.40153	7.01022	0.0016001	0.00120682	0.0246878	0.0162041
chr3	51975504	51975604	1472715	0	+	0.49	(0.485,0.523]	chr3	158082	3	SS5_PROX	SS5_PROX:INTRON	ABHD14A	ENSG00000248487.10	ENST00000497864.5:ENST00000494478.5:ENST00000273596.8:ENST00000474575.1:ENST00000491470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	66	2	4.96239	5.401265	5.84014	0.0518747	0.00139792	0.148503	0.0179863
chr3	149562587	149562687	1940243	0	-	0.45	(0.419,0.45]	chr3	197480	197	INTRON	INTRON	WWTR1	ENSG00000018408.15	ENST00000465804.5:ENST00000360632.8:ENST00000467467.5:ENST00000472417.1	protein_coding	protein_coding	protein_coding	protein_coding	1	154	2	3.97869	5.40118	6.82367	0.00414811	0.00330911	0.0416765	0.0324356
chr3	82142856	82142956	1507808	0	+	0.35	(0.33,0.36]	chr3	160995	716	INTRON	INTRON	LINC02008	ENSG00000239440.6	ENST00000470263.5:ENST00000494340.2:ENST00000666519.1:ENST00000668833.1:ENST00000653255.1:ENST00000654980.1:ENST00000666096.1	lncRNA	lncRNA	lncRNA	lncRNA	0	66	2	5.0592	5.40114	5.74308	0.0504445	0.00238447	0.148216	0.0260514
chr6	3231056	3231156	3086155	0	-	0.42	(0.419,0.45]	chr6	299713	1	SS5_PROX	SS5_PROX:INTRON	TUBB2B	ENSG00000137285.11	ENST00000473006.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	70	2	4.98054	5.40095	5.82136	0.0210659	0.0154548	0.0996078	0.0869771
chr13	19728442	19728541	5660897	0	-	0.363636	(0.36,0.39]	chr13	556059	185	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1:ENST00000338910.9:ENST00000619300.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	180	2	4.02863	5.40072	6.77281	0.0107356	1.84422e-4	0.0702888	0.00427863
chr19	45362242	45362342	7387149	0	-	0.57	(0.523,0.58]	chr19	767057	2	INTRON	INTRON	ERCC2	ENSG00000104884.17	ENST00000391945.10:ENST00000682508.1:ENST00000684218.1:ENST00000684407.1:ENST00000684458.1:ENST00000682414.1:ENST00000646507.1:ENST00000391944.8:ENST00000391941.6:ENST00000587376.6:ENST00000485403.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	64	2	5.30795	5.4005849999999995	5.49322	0.0315825	0.00324246	0.120781	0.0319521
chr5	1055881	1055981	2608379	0	-	0.54	(0.523,0.58]	chr5	259538	20	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10:ENST00000634447.1	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.30795	5.4005849999999995	5.49322	0.0315825	0.00324246	0.120781	0.0319521
chr6	24344680	24344780	3110196	0	-	0.37	(0.36,0.39]	chr6	301440	423	INTRON	INTRON	DCDC2	ENSG00000146038.12	ENST00000378454.8	protein_coding	protein_coding	protein_coding	protein_coding	1	160	2	3.74547	5.40057	7.05567	0.00550271	0.00226676	0.0454065	0.0300665
chr3	197517056	197517156	1991558	0	-	0.58	(0.523,0.58]	chr3	202753	13	INTRON	INTRON	BDH1	ENSG00000161267.12	ENST00000358186.6:ENST00000392378.6:ENST00000392379.6:ENST00000651856.1:ENST00000441275.5:ENST00000479425.5:ENST00000446746.5:ENST00000477015.5:ENST00000434143.5:ENST00000432819.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	71	2	4.83424	5.40049	5.96674	0.0144272	0.0109075	0.0833845	0.0707085
chr17	4959302	4959379	6843195	0	-	0.493506	(0.485,0.523]	chr17	692748	2	UTR3	UTR3:EXON_MRNA	SPAG7	ENSG00000091640.8	ENST00000206020.8:ENST00000575142.5:ENST00000573366.5	protein_coding	protein_coding	protein_coding	protein_coding	1	143	2	4.10606	5.40047	6.69488	0.00290687	0.00177809	0.0342042	0.0212512
chr14	59192166	59192266	5829910	0	+	0.39	(0.36,0.39]	chr14	570362	30	INTRON	INTRON	DAAM1	ENSG00000100592.16	ENST00000556596.1:ENST00000360909.8:ENST00000556135.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	67	2	4.99672	5.400024999999999	5.80333	0.0604395	0.00231859	0.158506	0.0255753
chr1	1063798	1063887	1377	0	+	0.674157	(0.58,1]	chr1	317	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000217801	ENSG00000217801.11	ENST00000688131.1:ENST00000456409.6:ENST00000692821.1:ENST00000394517.7:ENST00000427998.6:ENST00000685011.1:ENST00000692266.1:ENST00000412397.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	62	2	5.16453	5.39998	5.63543	0.0249802	0.00131165	0.10758	0.0171898
chr1	43565003	43565103	107089	0	+	0.58	(0.523,0.58]	chr1	13192	107	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	5.35124	5.399845	5.44845	0.0295772	0.00361636	0.116079	0.0342681
chr2	121478523	121478622	1262511	0	-	0.59596	(0.58,1]	chr2	136083	82	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	760	2	5.33646	5.3996949999999995	5.46293	6.4372e-5	2.96592e-6	0.00446482	2.18261e-4
chr12	132529483	132529583	5352910	0	+	0.64	(0.58,1]	chr12	523670	11	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.36153	5.399525000000001	5.43752	0.0156166	0.00273899	0.0849828	0.028553
chr16	2163283	2163382	6372933	0	+	0.59596	(0.58,1]	chr16	629416	71	INTRON	INTRON	TRAF7	ENSG00000131653.13	ENST00000565383.5:ENST00000569686.5:ENST00000326181.11:ENST00000567653.5:ENST00000564067.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	62	2	5.36153	5.399525000000001	5.43752	0.0156166	0.00273899	0.0849828	0.028553
chr18	39512774	39512873	7149525	0	-	0.424242	(0.419,0.45]	chr18	727068	769	INTRON	INTRON	MIR924HG	ENSG00000267374.3	ENST00000670992.1:ENST00000591629.2:ENST00000662708.1:ENST00000663592.1:ENST00000665749.1:ENST00000668737.1:ENST00000669590.1:ENST00000667816.1:ENST00000666361.1:ENST00000671441.1:ENST00000668052.1:ENST00000669399.1:ENST00000666611.1:ENST00000667009.1:ENST00000666148.1:ENST00000667500.1:ENST00000658829.1:ENST00000665844.1:ENST00000670388.1:ENST00000653594.1:ENST00000660099.1:ENST00000655721.1:ENST00000655349.1:ENST00000665416.1:ENST00000655720.1:ENST00000663128.1:ENST00000668391.1:ENST00000652839.1:ENST00000654975.1:ENST00000667895.1:ENST00000670943.1:ENST00000670383.1:ENST00000652860.1:ENST00000664919.1:ENST00000660405.1:ENST00000667722.1:ENST00000653742.1:ENST00000666181.1:ENST00000654966.1:ENST00000658177.1:ENST00000670121.1:ENST00000669520.1	lncRNA	lncRNA	lncRNA	lncRNA	0	71	2	4.91849	5.399465	5.88044	0.0192645	0.0174488	0.0954446	0.0928044
chr20	5187977	5188075	7423905	0	+	0.428571	(0.419,0.45]	chr20	773428	2	INTRON	INTRON	CDS2	ENSG00000101290.14	ENST00000460006.6:ENST00000379070.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	71	2	4.91849	5.399465	5.88044	0.0192645	0.0174488	0.0954446	0.0928044
chr1	204082975	204083075	322149	0	+	0.46	(0.45,0.485]	chr1	36272	44	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1:ENST00000528591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	5.18438	5.399345	5.61431	0.0217589	0.00773818	0.100615	0.0568726
chr1	44242080	44242180	459593	0	-	0.51	(0.485,0.523]	chr1	55305	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	142	2	4.60039	5.39928	6.19817	0.00723584	4.46264e-4	0.0565323	0.00807719
chr10	103596722	103596822	4756049	0	-	0.43	(0.419,0.45]	chr10	454714	28	UTR3	UTR3:EXON_MRNA	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.18804	5.399175	5.61031	0.051668	0.004032	0.148503	0.0371291
chr8	61683445	61683538	3986682	0	-	0.44086	(0.419,0.45]	chr8	381434	6	INTRON	INTRON	ASPH	ENSG00000198363.18	ENST00000379454.9:ENST00000541428.5:ENST00000522349.5:ENST00000445642.6:ENST00000356457.9:ENST00000519234.5:ENST00000518068.5:ENST00000517903.5:ENST00000517847.6:ENST00000522835.5:ENST00000518306.5:ENST00000517856.5:ENST00000517928.1:ENST00000389204.8:ENST00000522603.5:ENST00000379449.10:ENST00000517661.5:ENST00000522325.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	66	2	5.18804	5.399175	5.61031	0.051668	0.004032	0.148503	0.0371291
chr2	102800792	102800891	864859	0	+	0.373737	(0.36,0.39]	chr2	97913	24	INTRON	INTRON	TMEM182	ENSG00000170417.16	ENST00000639249.1:ENST00000409528.5:ENST00000409173.5:ENST00000488134.5:ENST00000640575.2:ENST00000412401.3:ENST00000486293.1:ENST00000484094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	67	2	5.16105	5.399125	5.6372	0.024533	0.00993384	0.106796	0.0666221
chr6	166952645	166952743	3302019	0	-	0.612245	(0.58,1]	chr6	319750	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000499370.6:ENST00000358165.7:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	753	2	5.08181	5.399045	5.71628	0.00104668	6.92627e-5	0.0146403	0.00465308
chr3	188241161	188241261	1652670	0	+	0.51	(0.485,0.523]	chr3	173754	6	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.30837	5.399015	5.48966	0.0314138	0.0033837199999999998	0.12069	0.0328791
chr11	67152803	67152903	4878760	0	+	0.25	[0,0.29]	chr11	469821	37	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000527157.1:ENST00000308783.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	69	2	4.85009	5.39896	5.94783	0.0124991	0.00660506	0.0765738	0.0539418
chr19	6720358	6720436	7322991	0	-	0.435897	(0.419,0.45]	chr19	756569	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695652.1:ENST00000594936.2:ENST00000695693.1:ENST00000600744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	150	2	4.20193	5.398899999999999	6.59587	0.00611222	0.00189707	0.0517172	0.0222086
chr20	49862728	49862828	7492905	0	+	0.4	(0.39,0.419]	chr20	781302	4	SS3_PROX	SS3_PROX:INTRON	SLC9A8	ENSG00000197818.12	ENST00000417961.5:ENST00000361573.3	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	4.63037	5.398820000000001	6.16727	0.0963077	9.41833e-4	0.189169	0.0135546
chr13	98575394	98575494	5748275	0	-	0.38	(0.36,0.39]	chr13	563357	535	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	151	2	4.00972	5.398384999999999	6.78705	0.00367488	0.0028904	0.0389784	0.0297318
chr1	94421739	94421838	186884	0	+	0.424242	(0.419,0.45]	chr1	20287	24	INTRON	INTRON	ABCD3	ENSG00000117528.14	ENST00000370214.9:ENST00000647998.2:ENST00000315713.5:ENST00000468860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	152	2	4.58163	5.398205	6.21478	0.011428	7.04817e-4	0.0723462	0.0111395
chr6	169696362	169696462	3304858	0	-	0.45	(0.419,0.45]	chr6	319967	9	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1:ENST00000474018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	152	2	4.58163	5.398205	6.21478	0.011428	7.04817e-4	0.0723462	0.0111395
chr1	89874341	89874441	181234	0	+	0.35	(0.33,0.36]	chr1	19585	273	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.37262	5.398145	5.42367	0.0299185	0.00569729	0.116945	0.046716
chr2	61537759	61537859	1158374	0	-	0.61	(0.58,1]	chr2	126972	3	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676789.1:ENST00000678741.1:ENST00000406957.5:ENST00000443240.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	1871	2	5.3846	5.39797	5.41134	2.7968e-5	2.78087e-7	0.00298241	4.49938e-5
chr6	20544849	20544949	2864039	0	+	0.53	(0.523,0.58]	chr6	279691	91	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000613575.4	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.39327	5.39776	5.40225	0.0277354	0.00404292	0.112851	0.0371291
chr17	72557923	72558023	6963890	0	-	0.49	(0.485,0.523]	chr17	710389	235	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	3	529	2	4.90766	5.39772	5.88778	0.00162238	1.75704e-6	0.0249683	1.525e-4
chr5	301581	301680	2377938	0	+	0.59596	(0.58,1]	chr5	237467	248	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	155	2	4.15237	5.39703	6.64169	0.00456039	6.2385e-5	0.0438198	0.00192539
chr1	24557468	24557568	62454	0	+	0.55	(0.523,0.58]	chr1	6701	9	INTRON	INTRON	NCMAP	ENSG00000184454.7	ENST00000374392.3	protein_coding	protein_coding	protein_coding	protein_coding	1	232	2	2.80981	5.3969700000000005	7.98413	0.0364868	2.2373e-4	0.139793	0.00845454
chr20	46649110	46649210	7568983	0	-	0.48	(0.45,0.485]	chr20	790913	350	INTRON	INTRON	SLC13A3	ENSG00000158296.14	ENST00000290317.9:ENST00000279027.9:ENST00000472148.5:ENST00000413164.6:ENST00000468915.5:ENST00000372121.5:ENST00000417157.2	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.1123	5.3969249999999995	5.68155	0.0458344	0.00241241	0.142336	0.0261086
chr5	177065893	177065993	2597599	0	+	0.46	(0.45,0.485]	chr5	257875	14	UTR3	UTR3:EXON_MRNA:INTRON	ZNF346	ENSG00000113761.12	ENST00000512315.5:ENST00000358149.8:ENST00000511834.5:ENST00000503039.1	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.1123	5.3969249999999995	5.68155	0.0458344	0.00241241	0.142336	0.0261086
chr6	80205811	80205911	2945300	0	+	0.48	(0.45,0.485]	chr6	289886	22	INTRON	INTRON	BCKDHB	ENSG00000083123.15	ENST00000356489.9:ENST00000320393.9:ENST00000468520.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	65	2	5.1123	5.3969249999999995	5.68155	0.0458344	0.00241241	0.142336	0.0261086
chr6	158021185	158021285	3059704	0	+	0.46	(0.45,0.485]	chr6	297373	30	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.1123	5.3969249999999995	5.68155	0.0458344	0.00241241	0.142336	0.0261086
chr2	203083962	203084025	998218	0	+	0.47619	(0.45,0.485]	chr2	109483	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBEAL1	ENSG00000144426.19	ENST00000682333.1:ENST00000463830.2:ENST00000683969.1:ENST00000449802.5:ENST00000497505.5:ENST00000681967.1:ENST00000683338.1:ENST00000683001.1:ENST00000682108.1:ENST00000483147.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	68	2	5.01267	5.396815	5.78096	0.0166968	0.011221	0.0884836	0.071709
chr10	15149541	15149640	4636636	0	-	0.474747	(0.45,0.485]	chr10	443033	76	INTRON	INTRON	NMT2	ENSG00000152465.18	ENST00000378165.9:ENST00000378150.1	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	4.95056	5.3965700000000005	5.84258	0.0151085	0.0127826	0.0841543	0.0773423
chr17	37216156	37216255	6891353	0	-	0.282828	[0,0.29]	chr17	699747	53	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000614450.4:ENST00000612120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	136	2	4.53381	5.39653	6.25925	0.00358096	4.62084e-4	0.0384019	0.00824885
chr17	35072455	35072555	6888030	0	-	0.4	(0.39,0.419]	chr17	699071	24	INTRON	INTRON	RFFL	ENSG00000092871.17	ENST00000315249.11:ENST00000584655.5:ENST00000447669.6:ENST00000584541.1:ENST00000414419.6:ENST00000581265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	66	2	5.26451	5.396509999999999	5.52851	0.029339	0.00800901	0.116079	0.0580954
chr8	25187348	25187448	3774111	0	+	0.43	(0.419,0.45]	chr8	363466	20	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000410074.5:ENST00000481100.5	protein_coding	protein_coding	protein_coding	protein_coding	1	154	2	3.95434	5.396495	6.83865	0.00404244	0.0035117	0.0412991	0.0339498
chr21	41337678	41337777	7621683	0	+	0.474747	(0.45,0.485]	chr21	796323	143	INTRON	INTRON	FAM3B	ENSG00000183844.17	ENST00000479810.6:ENST00000518236.1:ENST00000357985.7:ENST00000398647.7:ENST00000398652.7:ENST00000398646.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	75	2	4.49786	5.396475000000001	6.29509	0.101311	4.85904e-4	0.196131	0.00857996
chr3	30612367	30612467	1433149	0	+	0.48	(0.45,0.485]	chr3	152992	50	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4	protein_coding	protein_coding	protein_coding	protein_coding	10	1629	2	5.00877	5.396475000000001	5.78418	3.10265e-4	4.85617e-7	0.0100325	6.50379e-5
chr15	25017085	25017184	6064024	0	+	0.494949	(0.485,0.523]	chr15	595414	20	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	0	64	2	5.21769	5.39646	5.57523	0.0359739	0.00274261	0.127853	0.028553
chr19	6720280	6720358	7322990	0	-	0.435897	(0.419,0.45]	chr19	756569	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695652.1:ENST00000594936.2:ENST00000695693.1:ENST00000600744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	201	2	3.83963	5.396395	6.95316	0.00331448	0.00152782	0.0368376	0.0191213
chr1	144746234	144746334	229974	0	+	0.42	(0.419,0.45]	chr1	25236	70	INTRON	INTRON	LSP1P5	ENSG00000288905.1	ENST00000692403.1:ENST00000692166.1	lncRNA	lncRNA	lncRNA	lncRNA	0	68	2	5.09718	5.3962900000000005	5.6954	0.0254103	0.012235	0.108573	0.0757339
chr4	84789625	84789725	2273048	0	-	0.44	(0.419,0.45]	chr4	229235	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	WDFY3	ENSG00000163625.16	ENST00000295888.9	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	5.09718	5.3962900000000005	5.6954	0.0254103	0.012235	0.108573	0.0757339
chr21	8811166	8811266	7637427	0	-	0.59	(0.58,1]	chr21	798930	36	INTRON	INTRON	ENSG00000286033	ENSG00000286033.1	ENST00000651312.1	lncRNA	lncRNA	lncRNA	lncRNA	0	65	2	5.02314	5.39624	5.76934	0.00849371	0.00638322	0.0617717	0.0501889
chr7	1016923	1017023	3526392	0	-	0.66	(0.58,1]	chr7	340572	64	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	65	2	5.02314	5.39624	5.76934	0.00849371	0.00638322	0.0617717	0.0501889
chr6	158028159	158028258	3059774	0	+	0.606061	(0.58,1]	chr6	297374	9	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2:ENST00000640569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	130	2	4.31005	5.3962	6.48235	0.00202884	6.7911e-4	0.0283135	0.0108488
chr12	124821404	124821504	5536928	0	-	0.52	(0.485,0.523]	chr12	546095	33	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000415380.6:ENST00000681117.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000539320.3:ENST00000545493.1:ENST00000541661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	147	2	3.92296	5.39591	6.86886	0.00288574	0.00208565	0.0297057	0.0287557
chr17	7113124	7113222	6847765	0	-	0.418367	(0.39,0.419]	chr17	693423	39	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	1568	2	4.99673	5.395655	5.79458	4.27556e-4	1.02526e-6	0.0118593	1.06289e-4
chr3	105847437	105847536	1862760	0	-	0.313131	(0.29,0.33]	chr3	189853	76	INTRON	INTRON	CBLB	ENSG00000114423.23	ENST00000645759.1:ENST00000394030.8:ENST00000646499.1:ENST00000645425.1:ENST00000646825.1:ENST00000643322.1:ENST00000403724.5:ENST00000405772.5:ENST00000447441.6:ENST00000643403.1:ENST00000438603.6:ENST00000443752.2:ENST00000643192.1:ENST00000642907.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	192	2	4.70319	5.395490000000001	6.08779	0.0022215	7.71544e-4	0.0296426	0.0118336
chr1	91780915	91781014	526763	0	-	0.484848	(0.45,0.485]	chr1	61906	96	INTRON	INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	389	2	4.70934	5.3950700000000005	6.0808	0.00270425	5.48607e-6	0.033029	3.37015e-4
chr6	167944359	167944459	3074547	0	+	0.34	(0.33,0.36]	chr6	298936	3	SS5_PROX	SS5_PROX:INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7:ENST00000507679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	175	2	3.77849	5.395025	7.01156	0.0150295	7.80472e-5	0.0839559	0.00227541
chr20	36314004	36314103	7469127	0	+	0.626263	(0.58,1]	chr20	777805	71	INTRON	INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.11355	5.394985	5.67642	0.0271806	0.00117039	0.112113	0.0157899
chr10	34697018	34697118	4670628	0	-	0.42	(0.419,0.45]	chr10	445543	2	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.1405	5.39477	5.64904	0.0550015	0.00368884	0.153337	0.0348088
chr13	33217896	33217996	5684776	0	-	0.35	(0.33,0.36]	chr13	558196	120	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	65	2	5.15931	5.394575	5.62984	0.043896	0.00313405	0.139792	0.0312116
chr11	115199137	115199236	5128059	0	-	0.383838	(0.36,0.39]	chr11	498042	3	INTRON	INTRON	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000612235.4:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000616271.4:ENST00000441886.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	147	2	4.35204	5.394539999999999	6.43704	0.00676148	0.00120025	0.0544904	0.016121
chr1	154450080	154450180	248760	0	+	0.52	(0.485,0.523]	chr1	28836	1	SS5_PROX	SS5_PROX:INTRON	IL6R	ENSG00000160712.13	ENST00000344086.8:ENST00000368485.8:ENST00000515190.1:ENST00000507256.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	79	2	4.52142	5.394525	6.26763	0.0273555	0.00639185	0.119337	0.0529032
chr1	43558426	43558526	107023	0	+	0.64	(0.58,1]	chr1	13192	41	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	154	2	4.06678	5.394489999999999	6.7222	0.00544536	4.79419e-5	0.0486855	0.00159846
chr20	23634099	23634199	7537523	0	-	0.64	(0.58,1]	chr20	786639	1	SS3_PROX	SS3_PROX:INTRON	CST3	ENSG00000101439.9	ENST00000398411.5:ENST00000398409.1:ENST00000376925.8	protein_coding	protein_coding	protein_coding	protein_coding	2	321	2	5.0773	5.39438	5.71146	5.97447e-4	6.52725e-6	0.0143535	3.81827e-4
chr17	14330355	14330455	6683083	0	+	0.45	(0.419,0.45]	chr17	670741	250	INTRON	INTRON	HS3ST3B1	ENSG00000125430.9	ENST00000360954.3:ENST00000466596.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	66	2	5.30548	5.39429	5.4831	0.0345118	0.00792071	0.126025	0.057762
chr12	117053628	117053728	5514411	0	-	0.53	(0.523,0.58]	chr12	542873	3	SS5_PROX	SS5_PROX:INTRON	TESC	ENSG00000088992.18	ENST00000470612.5:ENST00000335209.12:ENST00000541210.5:ENST00000462502.5:ENST00000535198.1:ENST00000482176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	65	2	5.20104	5.39392	5.5868	0.020474	0.00648051	0.0979776	0.0503748
chr6	110398411	110398511	3232191	0	-	0.55	(0.523,0.58]	chr6	313355	47	INTRON	INTRON	DDO	ENSG00000203797.12	ENST00000368923.8:ENST00000479373.1:ENST00000368924.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	65	2	5.20104	5.39392	5.5868	0.020474	0.00648051	0.0979776	0.0503748
chr9	109276121	109276221	4366033	0	-	0.4	(0.39,0.419]	chr9	417004	73	INTRON	INTRON	EPB41L4B	ENSG00000095203.15	ENST00000374566.8:ENST00000374557.4	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	4.98886	5.39378	5.7987	0.0195328	0.0142222	0.0955413	0.0833845
chr16	85232665	85232765	6515395	0	+	0.58	(0.523,0.58]	chr16	646377	49	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	68	2	4.96714	5.393765	5.82039	0.0139724	0.0108948	0.0805959	0.0706366
chr18	13609470	13609569	7026688	0	+	0.555556	(0.523,0.58]	chr18	717646	237	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000677744.1:ENST00000593236.1:ENST00000678400.1:ENST00000586207.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	74	2	4.68785	5.39373	6.09961	0.0194172	0.00866655	0.0994526	0.0623824
chr19	16098984	16099081	7216206	0	+	0.474227	(0.45,0.485]	chr19	737333	24	INTRON	INTRON	TPM4	ENSG00000167460.17	ENST00000646974.2:ENST00000586499.6:ENST00000647464.2:ENST00000668959.1:ENST00000590180.3:ENST00000655004.1:ENST00000642789.1:ENST00000653979.1:ENST00000645471.1:ENST00000659595.1:ENST00000647037.1:ENST00000643579.2:ENST00000586193.6:ENST00000643494.1:ENST00000670382.1:ENST00000300933.9:ENST00000646575.1:ENST00000586833.7:ENST00000642221.1:ENST00000658224.1:ENST00000344824.11:ENST00000588483.2:ENST00000664983.1:ENST00000663894.1:ENST00000588032.6:ENST00000653961.1:ENST00000591645.3:ENST00000658489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	70	2	4.88567	5.39367	5.90167	0.0146126	0.0137135	0.0837727	0.0799457
chr12	113838382	113838482	5509252	0	-	0.52	(0.485,0.523]	chr12	542458	147	INTRON	INTRON	RBM19	ENSG00000122965.11	ENST00000545145.6:ENST00000392561.7:ENST00000261741.10:ENST00000552384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	65	2	5.01719	5.3932400000000005	5.76929	0.0480495	0.00167976	0.144601	0.0203806
chr20	46724143	46724242	7488447	0	+	0.282828	[0,0.29]	chr20	780623	92	INTRON	INTRON	SLC2A10	ENSG00000197496.6	ENST00000359271.4:ENST00000611837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	5.16198	5.3932400000000005	5.6245	0.0120701	0.00622515	0.0745322	0.0496245
chr16	81550580	81550680	6508799	0	+	0.5	(0.485,0.523]	chr16	645911	547	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.17012	5.393155	5.61619	0.038581	0.00247695	0.131324	0.0266492
chr17	806846	806946	6824889	0	-	0.51	(0.485,0.523]	chr17	690019	12	INTRON	INTRON	NXN	ENSG00000167693.17	ENST00000336868.8:ENST00000575801.5:ENST00000571684.5:ENST00000537628.6	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.17012	5.393155	5.61619	0.038581	0.00247695	0.131324	0.0266492
chrX	1416883	1416981	7965648	0	-	0.520408	(0.485,0.523]	chrX	834254	37	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.17012	5.393155	5.61619	0.038581	0.00247695	0.131324	0.0266492
chr17	54982513	54982613	6755164	0	+	0.32	(0.29,0.33]	chr17	681580	133	INTRON	INTRON	STXBP4	ENSG00000166263.13	ENST00000461444.5:ENST00000376352.6:ENST00000405898.5:ENST00000434978.6:ENST00000464340.5:ENST00000398391.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	65	2	5.19216	5.39311	5.59406	0.0184845	0.00712176	0.0928429	0.0541241
chr15	24986797	24986896	6063713	0	+	0.464646	(0.45,0.485]	chr15	595387	45	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	6	813	2	4.21585	5.393	6.57015	0.00131823	1.12049e-6	0.0221729	1.12213e-4
chr3	71413259	71413359	1829581	0	-	0.45	(0.419,0.45]	chr3	188242	526	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000649145.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	183	2	4.00447	5.392875	6.78128	0.0122777	2.09196e-4	0.0755681	0.0046683
chr1	17674784	17674884	54959	0	+	0.49	(0.485,0.523]	chr1	5603	98	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	145	2	3.97769	5.39284	6.80799	0.00250115	0.0023441	0.0305023	0.0268837
chr16	81677974	81678074	6510090	0	+	0.52	(0.485,0.523]	chr16	645974	3	SS3_PROX	SS3_PROX:INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.35096	5.392745	5.43453	0.0258944	0.0047171	0.109555	0.0413976
chr1	41192540	41192640	454436	0	-	0.36	(0.33,0.36]	chr1	54682	59	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000488592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	66	2	5.00642	5.3926750000000006	5.77893	0.0542065	0.00218403	0.151733	0.0244273
chr12	15630248	15630347	5378866	0	-	0.30303	(0.29,0.33]	chr12	527374	55	INTRON	INTRON	EPS8	ENSG00000151491.14	ENST00000281172.10:ENST00000543523.5:ENST00000543468.5:ENST00000644374.1:ENST00000646918.1:ENST00000645775.1:ENST00000642939.1:ENST00000646828.1:ENST00000647224.1:ENST00000642278.1:ENST00000646123.1:ENST00000647087.1:ENST00000543612.5:ENST00000540613.5:ENST00000542903.1:ENST00000545610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	67	2	5.02042	5.392555	5.76469	0.0139072	0.0103902	0.0805904	0.0682598
chr11	72040304	72040404	5067511	0	-	0.52	(0.485,0.523]	chr11	493004	3	SS5_PROX	SS5_PROX:INTRON	NUMA1	ENSG00000137497.19	ENST00000393695.8:ENST00000358965.10:ENST00000351960.10:ENST00000613205.4:ENST00000542977.5:ENST00000537217.5:ENST00000540843.5:ENST00000534987.5:ENST00000536119.5:ENST00000544238.5:ENST00000543937.5:ENST00000543009.5:ENST00000537930.5:ENST00000535947.5:ENST00000535087.5:ENST00000368959.9:ENST00000541719.5:ENST00000366394.7:ENST00000541641.5:ENST00000537905.5:ENST00000535111.5:ENST00000535838.5:ENST00000546131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	65	2	5.19749	5.39236	5.58723	0.0203514	0.00672953	0.0979211	0.0519464
chr10	18560165	18560265	4642330	0	-	0.43	(0.419,0.45]	chr10	443321	78	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	4.7145	5.39226	6.07002	0.0256236	0.0143746	0.115966	0.0821732
chr11	71137823	71137923	5065678	0	-	0.51	(0.485,0.523]	chr11	492790	184	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	4.96361	5.39221	5.82081	0.0138807	0.0112713	0.0804838	0.071709
chr2	158496592	158496692	935346	0	+	0.39	(0.36,0.39]	chr2	103367	379	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	65	2	5.28778	5.392099999999999	5.49642	0.0407706	0.00476539	0.135868	0.0414441
chr10	18555368	18555468	4642282	0	-	0.42	(0.419,0.45]	chr10	443321	30	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	4.63955	5.3918800000000005	6.14421	0.0293406	0.0127879	0.125102	0.0769397
chr12	132953849	132953949	5542070	0	-	0.52	(0.485,0.523]	chr12	547064	52	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	169	2	3.85426	5.391385	6.92851	0.0119901	6.37267e-5	0.0743424	0.00195661
chr16	81625893	81625992	6509556	0	+	0.646465	(0.58,1]	chr16	645926	38	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	1	129	2	4.44822	5.3912949999999995	6.33437	0.00276493	4.4502e-4	0.0332418	0.00806076
chr4	1323708	1323808	1995275	0	+	0.54	(0.523,0.58]	chr4	203263	1	SS5_PROX	SS5_PROX:INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	139	2	4.40581	5.390905	6.376	0.00529293	7.57639e-4	0.047841	0.0117078
chr6	138468145	138468245	3273822	0	-	0.48	(0.45,0.485]	chr6	316903	206	INTRON	INTRON	NHSL1	ENSG00000135540.12	ENST00000427025.6:ENST00000343505.10:ENST00000342260.9:ENST00000426841.6:ENST00000491526.6:ENST00000533765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	154	2	4.93893	5.390755	5.84258	0.0151085	1.8766e-4	0.0841543	0.00433756
chr13	98268800	98268900	5634919	0	+	0.37	(0.36,0.39]	chr13	553480	236	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	1	150	2	4.00972	5.390575	6.77143	0.00377816	0.0028904	0.0396337	0.0297318
chr11	121478543	121478643	4953918	0	+	0.41	(0.39,0.419]	chr11	478663	3	SS5_PROX	SS5_PROX:INTRON	SORL1	ENSG00000137642.13	ENST00000260197.12:ENST00000532451.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	201	2	4.58728	5.39057	6.19386	0.00406902	8.79539e-4	0.0413652	0.0129939
chr15	80900618	80900717	6164849	0	+	0.454545	(0.45,0.485]	chr15	606699	42	INTRON	INTRON	CEMIP	ENSG00000103888.17	ENST00000220244.7:ENST00000394685.8:ENST00000356249.9	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	4.9538	5.39035	5.8269	0.0569772	0.00167585	0.154343	0.0203806
chr2	235513133	235513232	1062727	0	+	0.434343	(0.419,0.45]	chr2	115651	179	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	67	2	5.15214	5.3900950000000005	5.62805	0.0280406	0.0109324	0.113651	0.0706366
chr1	9294894	9294994	19603	0	+	0.55	(0.523,0.58]	chr1	2204	3	SS5_PROX	SS5_PROX:INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11:ENST00000450402.1	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.1205	5.390045	5.65959	0.0416463	0.0021416	0.136301	0.0240825
chr18	77131338	77131438	7181636	0	-	0.52	(0.485,0.523]	chr18	730194	4	SS5_PROX	SS5_PROX:INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	69	2	4.8987	5.389925	5.88115	0.0129327	0.012541	0.0778105	0.0761905
chr1	224127175	224127275	348335	0	+	0.41	(0.39,0.419]	chr1	39234	124	INTRON	INTRON	FBXO28	ENSG00000143756.12	ENST00000366862.10:ENST00000424254.6:ENST00000523990.1:ENST00000483773.1:ENST00000519894.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	65	2	5.37172	5.3897200000000005	5.40772	0.0367885	0.00585126	0.129052	0.0474117
chr8	60862406	60862476	3822815	0	+	0.457143	(0.45,0.485]	chr8	368086	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CHD7	ENSG00000171316.13	ENST00000423902.7:ENST00000695853.1:ENST00000524602.5:ENST00000695850.1:ENST00000618450.1:ENST00000695851.1:ENST00000532149.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	65	2	5.23735	5.3896049999999995	5.54186	0.0243502	0.00687715	0.106588	0.0526888
chr11	75305655	75305754	5079162	0	-	0.525253	(0.523,0.58]	chr11	494228	21	INTRON	INTRON	ARRB1	ENSG00000137486.17	ENST00000420843.7:ENST00000360025.7:ENST00000532525.1:ENST00000524400.5:ENST00000533609.5:ENST00000533255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	64	2	5.30515	5.3894850000000005	5.47382	0.0244797	0.00509102	0.106683	0.0433513
chr12	56167759	56167859	5435462	0	-	0.55	(0.523,0.58]	chr12	533869	3	SS5_PROX	SS5_PROX:INTRON	SMARCC2	ENSG00000139613.12	ENST00000550164.6:ENST00000394023.7:ENST00000347471.8:ENST00000267064.8:ENST00000552674.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	64	2	5.30515	5.3894850000000005	5.47382	0.0244797	0.00509102	0.106683	0.0433513
chr2	62997865	62997965	816905	0	+	0.47	(0.45,0.485]	chr2	92205	7	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000496857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	142	2	4.29056	5.3894	6.48824	0.00499158	0.00118176	0.0463896	0.0159198
chr21	44872057	44872156	7678563	0	-	0.535354	(0.523,0.58]	chr21	802773	61	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	1289	2	4.65228	5.38933	6.12638	4.39745e-5	3.07849e-5	0.00310406	0.00149886
chr2	216187525	216187625	1024093	0	+	0.33	(0.29,0.33]	chr2	111645	251	INTRON	INTRON	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	64	2	5.1277	5.389175	5.65065	0.0382902	0.00240038	0.131324	0.0261006
chr12	70294892	70294991	5263559	0	+	0.434343	(0.419,0.45]	chr12	513293	2	INTRON	INTRON	CNOT2	ENSG00000111596.14	ENST00000547780.5:ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551661.5:ENST00000551132.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000548741.5:ENST00000552483.5:ENST00000552422.5:ENST00000547321.5:ENST00000553020.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000547867.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	66	2	5.09133	5.389044999999999	5.68676	0.0586308	0.00338051	0.155565	0.0328791
chr12	122092662	122092762	5343515	0	+	0.44	(0.419,0.45]	chr12	521864	130	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.09133	5.389044999999999	5.68676	0.0586308	0.00338051	0.155565	0.0328791
chr8	130372670	130372770	4082925	0	-	0.35	(0.33,0.36]	chr8	388177	105	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000521075.5:ENST00000520927.5:ENST00000524299.1:ENST00000521426.5:ENST00000520625.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	75	2	4.49572	5.3888750000000005	6.28203	0.103264	6.00348e-4	0.197541	0.00994732
chr10	18563363	18563463	4642362	0	-	0.44	(0.419,0.45]	chr10	443321	110	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	4.78575	5.388775	5.9918	0.0224633	0.0162379	0.108193	0.0873195
chr7	29197437	29197534	3334317	0	+	0.371134	(0.36,0.39]	chr7	322839	21	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5:ENST00000222792.11:ENST00000409350.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	67	2	5.10608	5.388680000000001	5.67128	0.023302	0.0111429	0.103669	0.071709
chr1	9293762	9293857	19591	0	+	0.684211	(0.58,1]	chr1	2201	3	INTRON	INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.0607	5.38849	5.71628	0.029633	0.00104668	0.116079	0.0146403
chr16	32772487	32772585	6442272	0	+	0.520408	(0.485,0.523]	chr16	638922	10	INTRON	INTRON	HERC2P5	ENSG00000260644.6	ENST00000562687.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	0	64	2	5.12092	5.388465	5.65601	0.0414411	0.00224147	0.136301	0.024843
chr1	151057684	151057783	588114	0	-	0.383838	(0.36,0.39]	chr1	68114	5	INTRON	INTRON	CDC42SE1	ENSG00000197622.13	ENST00000439374.6:ENST00000540998.5:ENST00000357235.6:ENST00000483763.5:ENST00000492796.5:ENST00000470278.5:ENST00000491825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	65	2	5.19713	5.388305	5.57948	0.0462258	0.00393844	0.143138	0.0367306
chr11	71068858	71068958	5064982	0	-	0.48	(0.45,0.485]	chr11	492754	119	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000618363.4:ENST00000458632.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	64	2	5.29973	5.3881049999999995	5.47648	0.035042	0.0039628	0.12704	0.0368027
chr18	12430381	12430470	7020146	0	+	0.483146	(0.45,0.485]	chr18	717085	6	INTRON	INTRON	PRELID3A	ENSG00000141391.14	ENST00000336990.8:ENST00000590956.5:ENST00000440960.6:ENST00000589565.1:ENST00000592149.5:ENST00000587735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	64	2	5.29973	5.3881049999999995	5.47648	0.035042	0.0039628	0.12704	0.0368027
chr9	136010917	136011017	4432181	0	-	0.65	(0.58,1]	chr9	423617	45	UTR3	UTR3:EXON_MRNA	NACC2	ENSG00000148411.8	ENST00000277554.4:ENST00000371753.5	protein_coding	protein_coding	protein_coding	protein_coding	1	129	2	4.33402	5.387805	6.44159	0.00221069	6.31529e-4	0.0295736	0.0102754
chr19	53521231	53521326	7290492	0	+	0.652632	(0.58,1]	chr19	750312	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ZNF331	ENSG00000130844.19	ENST00000647573.1:ENST00000648236.1:ENST00000513929.6:ENST00000253144.13	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	570	2	4.16868	5.3878	6.60692	2.57801e-4	1.53125e-5	0.00545505	0.00223783
chr1	64886741	64886841	503358	0	-	0.4	(0.39,0.419]	chr1	59991	4	SS3_PROX	SS3_PROX:INTRON	JAK1	ENSG00000162434.13	ENST00000342505.5:ENST00000672247.1:ENST00000673046.1:ENST00000672434.1:ENST00000671746.1:ENST00000673254.1:ENST00000673314.1:ENST00000671954.1:ENST00000672179.1:ENST00000673220.1:ENST00000671929.1:ENST00000673502.1:ENST00000672751.1:ENST00000672099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	76	2	4.64779	5.38777	6.12775	0.0273358	0.0115883	0.119337	0.0731017
chr13	113050914	113051013	5656144	0	+	0.666667	(0.58,1]	chr13	555180	37	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	5.25731	5.38772	5.51813	0.013519	0.00358178	0.0792526	0.0342681
chr17	356896	356996	6821862	0	-	0.63	(0.58,1]	chr17	689641	39	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.25731	5.38772	5.51813	0.013519	0.00358178	0.0792526	0.0342681
chr17	42236729	42236829	6903467	0	-	0.41	(0.39,0.419]	chr17	702203	42	INTRON	INTRON	STAT5B	ENSG00000173757.10	ENST00000293328.8:ENST00000468312.1:ENST00000415845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	67	2	5.10551	5.387715	5.66992	0.0237738	0.0112089	0.105296	0.071709
chr6	130869062	130869162	3260225	0	-	0.46	(0.45,0.485]	chr6	315460	1	SS5_PROX	SS5_PROX:INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000528282.5:ENST00000531410.5:ENST00000392427.7:ENST00000530757.5:ENST00000368128.6:ENST00000527411.5:ENST00000524581.5:ENST00000525271.5:ENST00000529208.5:ENST00000525193.5:ENST00000527659.5:ENST00000527017.6	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.34301	5.387365	5.43172	0.0328801	0.00440365	0.122593	0.0393688
chr7	583220	583318	3523918	0	-	0.479592	(0.45,0.485]	chr7	340376	35	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000400758.6:ENST00000430040.5	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.34301	5.387365	5.43172	0.0328801	0.00440365	0.122593	0.0393688
chr2	222914621	222914721	1038247	0	+	0.43	(0.419,0.45]	chr2	113229	30	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000542810.1:ENST00000540115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	572	2	4.87192	5.38733	5.90274	0.00120873	1.63277e-5	0.0210863	7.26982e-4
chr19	46869405	46869505	7274265	0	+	0.48	(0.45,0.485]	chr19	747261	78	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1	protein_coding	protein_coding	protein_coding	protein_coding	1	144	2	4.0881	5.3871	6.6861	0.00348661	0.00202979	0.0379065	0.0232814
chr12	28218610	28218709	5194861	0	+	0.393939	(0.39,0.419]	chr12	505383	192	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000544780.5:ENST00000543534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	65	2	5.36155	5.3870450000000005	5.41254	0.0347088	0.00648185	0.12648	0.0503748
chr14	69922653	69922753	5871595	0	+	0.48	(0.45,0.485]	chr14	573303	425	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000555917.1:ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	86	2	4.32491	5.387035	6.44916	0.0418883	0.00535292	0.149021	0.0480663
chr5	35081784	35081883	2635340	0	-	0.525253	(0.523,0.58]	chr5	261485	87	INTRON	INTRON	PRLR	ENSG00000113494.17	ENST00000231423.7:ENST00000513753.5:ENST00000514088.5:ENST00000542609.5:ENST00000509140.5:ENST00000397391.7:ENST00000348262.7:ENST00000618625.4:ENST00000620785.4:ENST00000618457.5:ENST00000508107.5:ENST00000619676.4:ENST00000511486.5:ENST00000310101.9:ENST00000509934.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	94	2	4.13061	5.386865	6.64312	0.0533354	0.00323048	0.167062	0.0362983
chr5	139652065	139652165	2549681	0	+	0.66	(0.58,1]	chr5	253168	5	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	1	132	2	4.10248	5.38647	6.67046	0.00135763	0.0012583	0.0224546	0.0167083
chr6	53058741	53058841	3149504	0	-	0.42	(0.419,0.45]	chr6	307236	170	INTRON	INTRON	CILK1	ENSG00000112144.16	ENST00000350082.10:ENST00000676107.1:ENST00000356971.3	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	4.7549	5.386425	6.01795	0.0888907	0.00152916	0.183874	0.0191213
chr7	47276321	47276419	3586540	0	-	0.5	(0.485,0.523]	chr7	345959	13	UTR3	UTR3:EXON_MRNA	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000428457.1	protein_coding	protein_coding	protein_coding	protein_coding	5	298	2	2.9027	5.38642	7.87014	0.00409775	2.80185e-4	0.0374453	0.00950092
chr7	99132663	99132762	3650292	0	-	0.424242	(0.419,0.45]	chr7	351382	111	INTRON	INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1:ENST00000472627.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	151	2	4.02619	5.386285	6.74638	0.00473615	0.00294478	0.0449264	0.0300172
chr8	124660514	124660614	4064262	0	-	0.51	(0.485,0.523]	chr8	387128	412	INTRON	INTRON	MTSS1	ENSG00000170873.19	ENST00000518547.6:ENST00000378017.7:ENST00000325064.9:ENST00000522162.1:ENST00000529463.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	172	2	4.21161	5.385815	6.56002	0.00624475	1.90696e-4	0.0523713	0.0043642
chr5	59205603	59205703	2666180	0	-	0.44	(0.419,0.45]	chr5	264317	117	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000503258.5:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7:ENST00000502575.1:ENST00000621323.4:ENST00000515324.1:ENST00000638939.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	69	2	4.98054	5.3857099999999996	5.79088	0.022052	0.0154548	0.101502	0.0869771
chr14	77534200	77534300	6012539	0	-	0.31	(0.29,0.33]	chr14	590523	122	INTRON	INTRON	SPTLC2	ENSG00000100596.8	ENST00000216484.7:ENST00000692906.1:ENST00000687688.1:ENST00000686627.1:ENST00000556607.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	70	2	4.82544	5.3856850000000005	5.94593	0.0156279	0.0101801	0.0877396	0.068447
chr13	113330976	113331076	5753240	0	-	0.61	(0.58,1]	chr13	564094	45	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	1	153	2	4.04904	5.385619999999999	6.7222	0.0056478	4.79419e-5	0.0495171	0.00159846
chr4	94600279	94600379	2089164	0	+	0.46	(0.45,0.485]	chr4	212960	122	INTRON	INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000509357.5:ENST00000511586.5:ENST00000380176.7:ENST00000506632.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	64	2	5.38503	5.38528	5.38553	0.0308908	0.00490471	0.119556	0.0422077
chr7	222347	222446	3305878	0	+	0.626263	(0.58,1]	chr7	320161	130	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	130	2	4.20999	5.385275	6.56056	0.00171861	9.16802e-4	0.025659	0.0133866
chr22	32672158	32672258	7791380	0	-	0.42	(0.419,0.45]	chr22	817442	419	INTRON	INTRON	SYN3	ENSG00000185666.15	ENST00000358763.7:ENST00000462268.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	68	2	4.87598	5.385210000000001	5.89444	0.0768574	0.00206691	0.174882	0.0235758
chr6	48110648	48110748	3147058	0	-	0.3	(0.29,0.33]	chr6	306802	2	SS5_PROX	SS5_PROX:INTRON	PTCHD4:ENSG00000286811	ENSG00000244694.8:ENSG00000286811.1	ENST00000339488.9:ENST00000398738.3:ENST00000679966.1:ENST00000661865.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	4	585	2	5.12721	5.384919999999999	5.64263	3.1601e-4	1.07274e-5	0.0101066	5.41027e-4
chr11	74200335	74200435	4892285	0	+	0.5	(0.485,0.523]	chr11	472295	285	INTRON	INTRON	PPME1	ENSG00000214517.10	ENST00000542710.3:ENST00000328257.13:ENST00000398427.6:ENST00000544401.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	70	2	4.83072	5.38489	5.93906	0.0148956	0.0113657	0.0847741	0.0723462
chr4	23775877	23775976	2208445	0	-	0.515152	(0.485,0.523]	chr4	223243	103	INTRON	INTRON	PPARGC1A	ENSG00000109819.9	ENST00000509702.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	70	2	4.83072	5.38489	5.93906	0.0148956	0.0113657	0.0847741	0.0723462
chr4	123102792	123102892	2120408	0	+	0.43	(0.419,0.45]	chr4	215760	6	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5	protein_coding	protein_coding	protein_coding	protein_coding	1	149	2	4.46582	5.38481	6.3038	0.00990101	9.58499e-4	0.0671959	0.0137469
chr17	43546214	43546314	6739027	0	+	0.77	(0.58,1]	chr17	678633	10	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	154	2	3.79598	5.38455	6.97312	0.00940557	2.07776e-5	0.0653252	8.62032e-4
chr11	70600729	70600829	5060280	0	-	0.38	(0.36,0.39]	chr11	492663	974	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	65	2	5.14958	5.384435	5.61929	0.0493212	0.00359045	0.146207	0.0342681
chr18	59352580	59352680	7171735	0	-	0.56	(0.523,0.58]	chr18	729104	11	INTRON	INTRON	LMAN1	ENSG00000074695.6	ENST00000251047.6	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.14602	5.3843	5.62258	0.0193313	0.00734367	0.0954446	0.0550721
chrX	153646557	153646655	7960828	0	+	0.561224	(0.523,0.58]	chrX	833164	36	INTRON	INTRON	DUSP9	ENSG00000130829.18	ENST00000477033.1:ENST00000370167.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	65	2	5.14602	5.3843	5.62258	0.0193313	0.00734367	0.0954446	0.0550721
chr10	18555768	18555868	4642286	0	-	0.41	(0.39,0.419]	chr10	443321	34	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	4.56871	5.3841	6.19949	0.0315133	0.0103045	0.127889	0.0684871
chr17	2297607	2297684	6834955	0	-	0.376623	(0.36,0.39]	chr17	691171	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.31441	5.384005	5.4536	0.0321864	0.00715023	0.121593	0.0541241
chr3	129571127	129571215	1911919	0	-	0.693182	(0.58,1]	chr3	194309	2	CDS	CDS:EXON_MRNA	PLXND1	ENSG00000004399.13	ENST00000324093.9:ENST00000514990.1:ENST00000504767.5:ENST00000511018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	165	2	3.40767	5.384005	7.36034	0.0197265	5.48927e-6	0.0958249	3.37015e-4
chr22	23226330	23226430	7692448	0	+	0.44	(0.419,0.45]	chr22	805046	266	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	68	2	5.04004	5.383990000000001	5.72794	0.0242188	0.0137308	0.106588	0.0814223
chr2	75547887	75547987	1194658	0	-	0.46	(0.45,0.485]	chr2	129875	213	INTRON	INTRON	EVA1A	ENSG00000115363.14	ENST00000485891.1:ENST00000490746.5:ENST00000233712.5:ENST00000393913.8:ENST00000410113.5:ENST00000410071.5:ENST00000432649.5:ENST00000486696.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	192	2	3.69998	5.38391	7.06784	0.00174842	0.00170784	0.025659	0.0210767
chr1	89909019	89909119	181581	0	+	0.45	(0.419,0.45]	chr1	19585	620	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	4	279	2	3.68321	5.383895	7.08458	0.00263222	8.81286e-4	0.0325876	0.0129974
chr15	55194797	55194897	6270105	0	-	0.43	(0.419,0.45]	chr15	617959	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RSL24D1	ENSG00000137876.11	ENST00000260443.9:ENST00000569386.2:ENST00000677172.1:ENST00000677147.1:ENST00000562895.2:ENST00000677989.1:ENST00000677730.1:ENST00000677092.1:ENST00000562993.5:ENST00000564344.5:ENST00000565854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	148	2	4.3399	5.3838550000000005	6.42781	0.0080847	0.00133187	0.0602118	0.0173276
chr12	46628795	46628895	5219482	0	+	0.33	(0.29,0.33]	chr12	506666	570	INTRON	INTRON	ENSG00000257261:ENSG00000272369	ENSG00000257261.7:ENSG00000272369.1	ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2:ENST00000607353.1	lncRNA	lncRNA	lncRNA	lncRNA	0	65	2	5.13716	5.3835	5.62984	0.0174273	0.00805226	0.0901531	0.0582806
chr16	20875262	20875362	6563345	0	-	0.41	(0.39,0.419]	chr16	654538	64	INTRON	INTRON	ERI2:DCUN1D3	ENSG00000196678.14:ENSG00000188215.10	ENST00000564349.5:ENST00000324344.9	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.14823	5.383475	5.61872	0.0501234	0.00361685	0.147892	0.0342681
chrX	48465126	48465223	8040339	0	-	0.587629	(0.58,1]	chrX	838611	18	INTRON	INTRON	SLC38A5	ENSG00000017483.16	ENST00000595796.5:ENST00000619100.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5:ENST00000416711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	463	2	4.0538	5.383319999999999	6.71284	0.00217711	1.68869e-7	0.0293136	3.25988e-5
chr18	28164685	28164785	7140523	0	-	0.41	(0.39,0.419]	chr18	726169	50	INTRON	INTRON	CDH2	ENSG00000170558.10	ENST00000269141.8:ENST00000676445.1:ENST00000675708.1:ENST00000430882.6:ENST00000413878.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	72	2	4.79402	5.3833	5.97258	0.0208208	0.0148746	0.102713	0.0833515
chr1	243480944	243481043	370444	0	+	0.575758	(0.523,0.58]	chr1	41881	47	INTRON	INTRON	SDCCAG8	ENSG00000054282.16	ENST00000366541.8:ENST00000435549.1	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.25403	5.38325	5.51247	0.0230387	0.00573579	0.102982	0.0467736
chr8	43100568	43100668	3811236	0	+	0.58	(0.523,0.58]	chr8	367069	3	SS5_PROX	SS5_PROX:INTRON	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000331373.10:ENST00000674727.1:ENST00000518991.6:ENST00000676163.1:ENST00000675129.1:ENST00000675791.1:ENST00000675013.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	64	2	5.25403	5.38325	5.51247	0.0230387	0.00573579	0.102982	0.0467736
chr2	134237106	134237206	896602	0	+	0.46	(0.45,0.485]	chr2	101196	1096	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	172	2	4.00556	5.383205	6.76085	0.00992252	1.3016e-4	0.0671959	0.00332369
chr16	12170516	12170616	6391573	0	+	0.59	(0.58,1]	chr16	631959	349	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.26138	5.383175	5.50497	0.021217	0.00187297	0.0996078	0.0219434
chr9	125810350	125810450	4239037	0	+	0.45	(0.419,0.45]	chr9	402584	125	INTRON	INTRON	PBX3	ENSG00000167081.18	ENST00000342287.9:ENST00000373489.10:ENST00000373487.8:ENST00000373482.6:ENST00000373492.6:ENST00000672674.1:ENST00000491787.7:ENST00000447726.6:ENST00000673571.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	71	2	4.69033	5.38314	6.07595	0.0958674	0.00132452	0.189038	0.0173138
chr1	3892547	3892643	386347	0	-	0.677083	(0.58,1]	chr1	44329	9	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	C1orf174	ENSG00000198912.12	ENST00000474140.1:ENST00000486765.5:ENST00000361605.4:ENST00000679703.1:ENST00000680054.1:ENST00000680279.1:ENST00000681823.1:ENST00000679946.1:ENST00000680169.1:ENST00000680535.1:ENST00000679929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	61	2	5.30747	5.383095	5.45872	0.0196049	0.00211999	0.0955413	0.0239744
chr17	76548288	76548387	6977088	0	-	0.323232	(0.29,0.33]	chr17	712268	20	INTRON	INTRON	CYGB:ENSG00000267546	ENSG00000161544.10:ENSG00000267546.2	ENST00000589145.1:ENST00000589963.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	64	2	5.07676	5.38308	5.6894	0.0412683	0.00217863	0.136301	0.0243976
chr5	177899318	177899418	2601456	0	+	0.42	(0.419,0.45]	chr5	258444	136	INTRON	INTRON	ENSG00000170089	ENSG00000170089.16	ENST00000507037.5:ENST00000358442.4:ENST00000514635.1:ENST00000503449.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	65	2	5.32195	5.3830100000000005	5.44407	0.0431627	0.00585948	0.138403	0.0474117
chr3	98740883	98740983	1516295	0	+	0.36	(0.33,0.36]	chr3	161540	69	INTRON	INTRON	ST3GAL6	ENSG00000064225.13	ENST00000489112.5:ENST00000265261.11:ENST00000460774.5:ENST00000469105.5:ENST00000466482.5:ENST00000462152.5:ENST00000486249.5:ENST00000497008.5:ENST00000486334.6:ENST00000394162.5:ENST00000613264.5:ENST00000480133.1:ENST00000465004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	66	2	4.95163	5.38277	5.81391	0.0583482	0.00200357	0.155373	0.0230381
chr1	33036200	33036299	440136	0	-	0.494949	(0.485,0.523]	chr1	52532	45	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	AK2	ENSG00000004455.18	ENST00000373449.7:ENST00000672715.1:ENST00000550338.6:ENST00000695599.1:ENST00000354858.11:ENST00000695600.1:ENST00000695601.1:ENST00000491241.2:ENST00000695602.1:ENST00000469238.2:ENST00000695603.1:ENST00000695604.1:ENST00000672308.1:ENST00000548033.5:ENST00000467905.5:ENST00000480134.5:ENST00000695605.1:ENST00000673291.1:ENST00000487289.1:ENST00000548559.1:ENST00000551979.1:ENST00000695606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	65	2	5.14248	5.38274	5.623	0.0192139	0.00761903	0.095424900000000007	0.0561937
chr3	60222130	60222230	1795828	0	-	0.29	[0,0.29]	chr3	186807	1414	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.30082	5.382655	5.46449	0.0212677	0.00299691	0.0996805	0.030427
chr12	12170763	12170862	5373198	0	-	0.323232	(0.29,0.33]	chr12	526986	51	INTRON	INTRON	LRP6	ENSG00000070018.9	ENST00000261349.9:ENST00000538239.5:ENST00000543091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	64	2	5.24515	5.382435	5.51972	0.0208628	0.00631714	0.0991037	0.0501889
chr4	186656521	186656621	2374508	0	-	0.46	(0.45,0.485]	chr4	237239	164	INTRON	INTRON	FAT1	ENSG00000083857.15	ENST00000441802.7	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.00859	5.38232	5.75605	0.052901	0.002004	0.14912	0.0230381
chr19	58327614	58327713	7301072	0	+	0.484848	(0.45,0.485]	chr19	752038	1	INTRON	INTRON	ZSCAN22	ENSG00000182318.6	ENST00000329665.5	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.16149	5.382235	5.60298	0.0427653	0.00292492	0.13762	0.029882
chr2	11482881	11482980	719689	0	+	0.767677	(0.58,1]	chr2	84084	1	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000628795.2	protein_coding	protein_coding	protein_coding	protein_coding	2	336	2	5.25214	5.382235	5.51233	2.16908e-4	3.23002e-5	0.00833487	0.00118877
chr2	222914820	222914920	1038249	0	+	0.2	[0,0.29]	chr2	113229	32	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000542810.1:ENST00000540115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	134	2	4.4147	5.38221	6.34972	0.00298169	6.55393e-4	0.0347875	0.0105817
chr11	70661495	70661595	5060891	0	-	0.49	(0.485,0.523]	chr11	492680	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	148	2	3.83677	5.382015	6.92726	0.00360381	0.00186327	0.0342681	0.0269723
chr3	23845185	23845285	1431184	0	+	0.29	[0,0.29]	chr3	152792	333	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	62	2	5.25474	5.38201	5.50928	0.02298	0.00267774	0.102982	0.0282006
chr16	32771795	32771894	6442265	0	+	0.484848	(0.45,0.485]	chr16	638922	3	INTRON	INTRON	HERC2P5	ENSG00000260644.6	ENST00000562687.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	0	72	2	4.5725	5.382	6.1915	0.0926859	6.44145e-4	0.188571	0.0104271
chr15	52135956	52136056	6261564	0	-	0.47	(0.45,0.485]	chr15	617063	2	SS3_PROX	SS3_PROX:INTRON	GNB5	ENSG00000069966.19	ENST00000261837.12:ENST00000396335.8:ENST00000358784.11:ENST00000559348.5:ENST00000558519.5:ENST00000561313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	64	2	5.33781	5.38184	5.42587	0.0290571	0.0054758	0.116079	0.0454065
chr2	3286917	3287017	1080976	0	-	0.75	(0.58,1]	chr2	117633	42	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	61	2	5.21377	5.381775	5.54978	0.0230012	0.00165911	0.102982	0.0202545
chr16	85231465	85231565	6515383	0	+	0.45	(0.419,0.45]	chr16	646377	37	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	431	2	5.26514	5.38175	5.49836	8.59563e-4	1.05761e-4	0.0174632	0.00286061
chr3	73005040	73005139	1502810	0	+	0.515152	(0.485,0.523]	chr3	160766	65	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000495566.1:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	64	2	5.25048	5.38169	5.5129	0.0229047	0.0059614	0.102982	0.0479866
chr7	138510103	138510202	3502502	0	+	0.444444	(0.419,0.45]	chr7	337502	53	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	202	2	4.13248	5.38159	6.6307	0.00576404	6.9883e-4	0.0500197	0.0110535
chr2	42711855	42711953	776905	0	+	0.418367	(0.39,0.419]	chr2	89176	24	INTRON	INTRON	MTA3	ENSG00000057935.14	ENST00000405592.5:ENST00000406652.5:ENST00000405094.2:ENST00000409019.5:ENST00000467925.5:ENST00000478602.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	66	2	4.99538	5.38158	5.76778	0.0613573	0.0025422	0.158506	0.0271978
chr3	15098847	15098921	1694742	0	-	0.581081	(0.58,1]	chr3	177106	2	SS5_PROX	SS5_PROX:INTRON	RBSN	ENSG00000131381.12	ENST00000253699.7:ENST00000476527.6:ENST00000449964.6:ENST00000441057.5:ENST00000449050.5:ENST00000507357.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	61	2	5.35214	5.38154	5.41094	0.0181452	0.00240622	0.0921579	0.0261006
chr16	85227002	85227102	6515338	0	+	0.43	(0.419,0.45]	chr16	646373	418	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	4.85365	5.38137	5.90909	0.0197641	0.0184411	0.100774	0.0927235
chr19	44620260	44620358	7267770	0	+	0.428571	(0.419,0.45]	chr19	746138	17	INTRON	INTRON	IGSF23	ENSG00000216588.9	ENST00000402988.6:ENST00000592507.1:ENST00000428245.5	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	4.85365	5.38137	5.90909	0.0197641	0.0184411	0.100774	0.0927235
chr8	133296924	133297019	4084300	0	-	0.705263	(0.58,1]	chr8	388372	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000520943.5:ENST00000521544.5:ENST00000523892.5:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	282	2	5.02314	5.38133	5.73952	0.00638322	1.26423e-4	0.0501889	0.00622672
chr1	90823976	90824076	524367	0	-	0.48	(0.45,0.485]	chr1	61741	155	INTRON	INTRON	LINC02609	ENSG00000233593.11	ENST00000671059.1:ENST00000659034.2:ENST00000669273.1:ENST00000657053.2:ENST00000635581.3:ENST00000634619.2:ENST00000668679.1:ENST00000435649.3:ENST00000653770.2	lncRNA	lncRNA	lncRNA	lncRNA	0	67	2	5.01267	5.3809000000000005	5.74913	0.017574	0.011221	0.0906595	0.071709
chr8	9775953	9776051	3754938	0	+	0.479592	(0.45,0.485]	chr8	360888	32	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	5.01267	5.3809000000000005	5.74913	0.017574	0.011221	0.0906595	0.071709
chr16	20904610	20904710	6418005	0	+	0.41	(0.39,0.419]	chr16	634694	15	INTRON	INTRON	LYRM1	ENSG00000102897.10	ENST00000568663.5:ENST00000412082.6:ENST00000439021.5:ENST00000567165.5:ENST00000569023.5:ENST00000568820.5:ENST00000562740.5:ENST00000219168.8:ENST00000567954.6:ENST00000396052.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	196	2	3.87105	5.3808	6.89055	0.00314209	0.00131527	0.0358106	0.0172359
chr19	56405148	56405246	7294716	0	+	0.377551	(0.36,0.39]	chr19	751199	3	INTRON	INTRON	ZNF583	ENSG00000198440.9	ENST00000588635.1:ENST00000291598.11:ENST00000537943.5:ENST00000539211.6:ENST00000333201.13:ENST00000391778.3:ENST00000436972.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	68	2	4.82572	5.3805250000000004	5.93533	0.0751666	0.00167855	0.172839	0.0203806
chr13	113059194	113059294	5656229	0	+	0.68	(0.58,1]	chr13	555189	44	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	1	135	2	3.95573	5.3804	6.80507	0.00191878	0.00101308	0.0223755	0.0191342
chr16	84763786	84763885	6514479	0	+	0.555556	(0.523,0.58]	chr16	646322	3	SS3_PROX	SS3_PROX:INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569038.5:ENST00000570053.1:ENST00000563433.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	148	2	4.90993	5.3804	5.85087	0.0132767	1.72685e-4	0.0787251	0.00408359
chr9	134341031	134341131	4260833	0	+	0.67	(0.58,1]	chr9	406311	140	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	213	2	3.88969	5.380285	6.87088	0.00311807	2.92911e-5	0.0356998	0.00110673
chr11	61754888	61754988	4862516	0	+	0.6	(0.58,1]	chr11	465999	17	INTRON	INTRON	MYRF	ENSG00000124920.14	ENST00000278836.10:ENST00000537766.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	65	2	4.95814	5.38002	5.8019	0.007984	0.0074469	0.0596361	0.0553519
chr7	74831211	74831311	3603804	0	-	0.29	[0,0.29]	chr7	347861	58	INTRON	INTRON	GTF2IRD2	ENSG00000196275.16	ENST00000451013.7:ENST00000651129.1:ENST00000619775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	62	2	5.20713	5.37992	5.55271	0.0248721	0.00239817	0.10758	0.0261006
chr6	34358269	34358369	3123491	0	-	0.35	(0.33,0.36]	chr6	304665	159	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.34082	5.37981	5.4188	0.0338211	0.00513015	0.124319	0.0435186
chr9	14837356	14837456	4280088	0	-	0.48	(0.45,0.485]	chr9	408973	120	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	730	2	4.42363	5.37981	6.33599	0.00102565	2.4061e-6	0.0192489	1.89153e-4
chr16	85432618	85432718	6517397	0	+	0.45	(0.419,0.45]	chr16	646391	733	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	76	2	4.63955	5.3797250000000005	6.1199	0.0293406	0.0132894	0.125102	0.0787251
chr19	5898969	5899067	7318260	0	-	0.632653	(0.58,1]	chr19	755741	16	INTRON	INTRON	NDUFA11	ENSG00000174886.14	ENST00000418389.6:ENST00000308961.5:ENST00000592634.5:ENST00000593233.1:ENST00000650663.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	5.02314	5.37958	5.73602	0.00904546	0.00638322	0.0637469	0.0501889
chr3	52232316	52232413	1777897	0	-	0.639175	(0.58,1]	chr3	184824	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TWF2	ENSG00000247596.10	ENST00000305533.10:ENST00000678838.1:ENST00000678352.1:ENST00000679296.1:ENST00000676989.1:ENST00000678549.1:ENST00000678882.1:ENST00000678700.1:ENST00000676552.1:ENST00000676800.1:ENST00000677127.1:ENST00000678681.1:ENST00000499914.2:ENST00000472755.2:ENST00000678330.1:ENST00000676988.1:ENST00000677058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	64	2	5.02314	5.37958	5.73602	0.00904546	0.00638322	0.0637469	0.0501889
chr10	75728247	75728347	4523446	0	+	0.34	(0.33,0.36]	chr10	432271	803	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	259	2	4.33214	5.3795649999999995	6.42699	0.00578704	1.68496e-4	0.0501412	0.00400768
chr13	113005278	113005377	5655676	0	+	0.707071	(0.58,1]	chr13	555138	29	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	62	2	5.20223	5.379519999999999	5.55681	0.0126042	0.00411607	0.0761905	0.0374453
chr6	148017578	148017678	3031870	0	+	0.52	(0.485,0.523]	chr6	295888	154	INTRON	INTRON	ENSG00000287976	ENSG00000287976.1	ENST00000668177.1	lncRNA	lncRNA	lncRNA	lncRNA	1	139	2	4.22394	5.379505	6.53507	0.00392199	0.00129102	0.0404814	0.0170457
chr3	65418938	65419037	1809639	0	-	0.515152	(0.485,0.523]	chr3	187193	171	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5	protein_coding	protein_coding	protein_coding	protein_coding	1	168	2	4.02059	5.379075	6.73756	0.0088843599999999991	1.13097e-4	0.0635397	0.0030016
chr1	12584149	12584248	402444	0	-	0.50505	(0.485,0.523]	chr1	46222	31	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	521	2	5.02232	5.37902	5.73572	5.13489e-4	1.35768e-5	0.0131807	6.38969e-4
chr6	17876629	17876728	3106638	0	-	0.484848	(0.45,0.485]	chr6	301264	28	INTRON	INTRON	KIF13A	ENSG00000137177.20	ENST00000378814.9:ENST00000259711.11:ENST00000378826.6:ENST00000378843.6:ENST00000636847.1:ENST00000507576.1:ENST00000505588.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	66	2	4.89685	5.3789549999999995	5.86106	0.0614781	0.00153611	0.158506	0.0191553
chr19	6229871	6229970	7321310	0	-	0.646465	(0.58,1]	chr19	756087	24	INTRON	INTRON	MLLT1	ENSG00000130382.9	ENST00000252674.9	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.16453	5.378885	5.59324	0.0249802	0.0014734	0.10758	0.0185589
chr4	884390	884488	2178446	0	-	0.673469	(0.58,1]	chr4	220624	1	SS3_PROX	SS3_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.16453	5.378885	5.59324	0.0249802	0.0014734	0.10758	0.0185589
chr9	71683557	71683654	4313910	0	-	0.247423	[0,0.29]	chr9	412404	3	UTR3	UTR3:EXON_MRNA	CEMIP2	ENSG00000135048.14	ENST00000377044.9:ENST00000377057.5:ENST00000538669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	303	2	3.4957	5.378605	7.26151	5.25202e-4	4.21701e-4	0.011772	0.00903907
chr21	45451924	45452024	7630782	0	+	0.65	(0.58,1]	chr21	797656	461	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.36153	5.378495	5.39546	0.0168207	0.00273899	0.0884836	0.028553
chr7	5431902	5432002	3536333	0	-	0.53	(0.523,0.58]	chr7	341516	4	SS3_PROX	SS3_PROX:INTRON	FBXL18	ENSG00000155034.20	ENST00000415009.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	68	2	4.71922	5.37839	6.03756	0.0721601	7.92905e-4	0.168159	0.0120621
chr10	42523405	42523458	4674455	0	-	0.528302	(0.523,0.58]	chr10	445846	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF37BP	ENSG00000234420.8	ENST00000452075.7:ENST00000692055.1:ENST00000689225.1:ENST00000686311.1:ENST00000686673.1:ENST00000688789.1:ENST00000690905.1:ENST00000435805.7:ENST00000687308.1:ENST00000692559.1:ENST00000690442.1:ENST00000473592.1:ENST00000691808.1:ENST00000692594.1:ENST00000691366.1:ENST00000689409.1:ENST00000685241.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	63	2	5.26332	5.3782700000000006	5.49322	0.0337698	0.00324246	0.124319	0.0319521
chr16	81614416	81614515	6509440	0	+	0.555556	(0.523,0.58]	chr16	645921	35	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	63	2	5.26332	5.3782700000000006	5.49322	0.0337698	0.00324246	0.124319	0.0319521
chr9	17295994	17296094	4126854	0	+	0.55	(0.523,0.58]	chr9	392370	218	INTRON	INTRON	CNTLN	ENSG00000044459.15	ENST00000380647.8:ENST00000380641.4	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.26332	5.3782700000000006	5.49322	0.0337698	0.00324246	0.124319	0.0319521
chr2	54039859	54039959	795599	0	+	0.53	(0.523,0.58]	chr2	90708	646	INTRON	INTRON	ACYP2	ENSG00000170634.13	ENST00000458030.3:ENST00000422521.2:ENST00000607452.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	5.30795	5.3782	5.44845	0.0315825	0.00361636	0.120781	0.0342681
chr1	17676982	17677082	54981	0	+	0.63	(0.58,1]	chr1	5603	120	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	176	2	3.64784	5.378035	7.10823	0.00130204	5.16402e-4	0.0171306	0.0132022
chr13	99644249	99644349	5640304	0	+	0.34	(0.33,0.36]	chr13	553908	371	INTRON	INTRON	CLYBL	ENSG00000125246.16	ENST00000376355.7:ENST00000693071.1:ENST00000689673.1:ENST00000339105.9:ENST00000376354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	64	2	5.20687	5.37798	5.54909	0.041040600000000003	0.00379428	0.136289	0.0355124
chr17	38111866	38111966	6728120	0	+	0.36	(0.33,0.36]	chr17	676129	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000274615	ENSG00000274615.1	ENST00000611212.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	64	2	5.20687	5.37798	5.54909	0.041040600000000003	0.00379428	0.136289	0.0355124
chr19	17146586	17146685	7218912	0	+	0.363636	(0.36,0.39]	chr19	737731	7	INTRON	INTRON	MYO9B	ENSG00000099331.14	ENST00000682292.1:ENST00000595618.5:ENST00000594824.5:ENST00000397274.6:ENST00000595641.5	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	4.885	5.37792	5.87084	0.0697729	0.00196738	0.167185	0.022768300000000002
chr20	3614928	3615027	7421021	0	+	0.323232	(0.29,0.33]	chr20	773042	103	INTRON	INTRON	ATRN	ENSG00000088812.18	ENST00000262919.10:ENST00000446916.2	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	4.75412	5.377865	6.00161	0.0180435	0.00923185	0.0952934	0.0644666
chr6	7582069	7582141	2840280	0	+	0.319444	(0.29,0.33]	chr6	278206	1	INTRON	INTRON	DSP	ENSG00000096696.15	ENST00000418664.2:ENST00000379802.8	protein_coding	protein_coding	protein_coding	protein_coding	2	392	2	5.12862	5.3777349999999995	5.62685	3.26831e-4	9.76722e-5	0.0102955	0.00268525
chr2	240624586	240624685	1075189	0	+	0.636364	(0.58,1]	chr2	116654	52	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	1	131	2	4.10248	5.3775949999999995	6.65271	0.00141059	0.0012583	0.0229261	0.0167083
chr11	71069258	71069358	5064986	0	-	0.48	(0.45,0.485]	chr11	492754	123	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000618363.4:ENST00000458632.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	64	2	5.1123	5.37755	5.6428	0.0458344	0.00265386	0.142336	0.027979
chr16	85394534	85394634	6517016	0	+	0.62	(0.58,1]	chr16	646391	352	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	4.89007	5.37749	5.86491	0.00872525	0.00707578	0.0612699	0.0558168
chr18	77118328	77118427	7181504	0	-	0.585859	(0.58,1]	chr18	730186	127	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1:ENST00000583798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	4.89007	5.37749	5.86491	0.00872525	0.00707578	0.0612699	0.0558168
chr16	78783648	78783748	6502255	0	+	0.33	(0.29,0.33]	chr16	645717	33	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	68	2	4.72635	5.37746	6.02857	0.0672935	9.04417e-4	0.163263	0.0132704
chr16	85423621	85423721	6517307	0	+	0.62	(0.58,1]	chr16	646391	643	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	4.74346	5.3774	6.01134	0.0121457	0.00531709	0.0754623	0.047841
chr17	39740778	39740875	6732030	0	+	0.597938	(0.58,1]	chr17	676881	2	INTRON	INTRON	GRB7	ENSG00000141738.14	ENST00000577695.5:ENST00000309156.9:ENST00000485182.5:ENST00000583813.1:ENST00000584819.5:ENST00000394211.7:ENST00000578702.5:ENST00000445327.6:ENST00000394209.6:ENST00000584053.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	69	2	4.74346	5.3774	6.01134	0.0121457	0.00531709	0.0754623	0.047841
chr10	132554557	132554657	4617006	0	+	0.58	(0.523,0.58]	chr10	441139	160	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.02927	5.37707	5.72487	0.0163679	0.0095202	0.0875379	0.0650078
chr11	70685407	70685507	5061133	0	-	0.57	(0.523,0.58]	chr11	492688	154	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	5.02927	5.37707	5.72487	0.0163679	0.0095202	0.0875379	0.0650078
chr19	4492624	4492720	7193762	0	+	0.458333	(0.45,0.485]	chr19	732770	4	INTRON	INTRON	HDGFL2	ENSG00000167674.15	ENST00000616600.5:ENST00000621835.4:ENST00000589486.5:ENST00000615225.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	64	2	5.28846	5.37702	5.46558	0.0273644	0.00612862	0.112372	0.0489549
chr1	6030428	6030527	6740	0	+	0.414141	(0.39,0.419]	chr1	1420	26	INTRON	INTRON	KCNAB2	ENSG00000069424.16	ENST00000655548.1:ENST00000378111.6:ENST00000378097.6:ENST00000666163.1:ENST00000671676.1:ENST00000658883.1:ENST00000658691.1:ENST00000435937.6:ENST00000445501.6:ENST00000478098.5:ENST00000653262.1:ENST00000668706.1:ENST00000389632.9:ENST00000654144.1:ENST00000341524.6:ENST00000462676.3:ENST00000428161.6:ENST00000352527.6:ENST00000663169.1:ENST00000653635.1:ENST00000661248.1:ENST00000656198.1:ENST00000602612.5:ENST00000481789.2:ENST00000656746.1:ENST00000665338.1:ENST00000666299.1:ENST00000652845.1:ENST00000655703.1:ENST00000669250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	67	2	4.88366	5.376965	5.87027	0.0707789	0.00198333	0.168159	0.0229039
chr17	4341762	4341861	6842205	0	-	0.414141	(0.39,0.419]	chr17	692473	61	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1:ENST00000574059.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	67	2	4.88366	5.376965	5.87027	0.0707789	0.00198333	0.168159	0.0229039
chr1	2155200	2155298	4176	0	+	0.510204	(0.485,0.523]	chr1	983	39	INTRON	INTRON	PRKCZ	ENSG00000067606.17	ENST00000378567.8:ENST00000400921.6:ENST00000461106.6:ENST00000486681.5:ENST00000479263.5:ENST00000503672.1:ENST00000478770.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	63	2	5.26375	5.376704999999999	5.48966	0.0335928	0.0033837199999999998	0.124319	0.0328791
chr1	2265142	2265241	4863	0	+	0.50505	(0.485,0.523]	chr1	1052	167	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	5.26375	5.376704999999999	5.48966	0.0335928	0.0033837199999999998	0.124319	0.0328791
chr13	113469053	113469152	5753721	0	-	0.515152	(0.485,0.523]	chr13	564152	58	INTRON	INTRON	DCUN1D2	ENSG00000150401.15	ENST00000478244.6:ENST00000332592.7:ENST00000375403.6:ENST00000438545.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	63	2	5.26375	5.376704999999999	5.48966	0.0335928	0.0033837199999999998	0.124319	0.0328791
chr19	324234	324334	7303118	0	-	0.47	(0.45,0.485]	chr19	752407	102	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	1	147	2	3.90828	5.376685	6.84509	0.00323103	0.00259845	0.0322672	0.0319521
chr19	35005322	35005422	7244913	0	+	0.59	(0.58,1]	chr19	742073	21	INTRON	INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	145	2	3.68463	5.37663	7.06863	0.00404771	5.64522e-4	0.0371291	0.0138715
chr11	590007	590104	4784918	0	+	0.608247	(0.58,1]	chr11	457994	22	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	155	2	4.26426	5.376625000000001	6.48899	0.00360545	1.02074e-4	0.0385302	0.00277572
chr17	15464563	15464663	6860080	0	-	0.59	(0.58,1]	chr17	695067	111	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	422	2	5.29354	5.376555	5.45957	2.45636e-4	5.46346e-6	0.00885847	3.36475e-4
chr1	855549	855649	663	0	+	0.53	(0.523,0.58]	chr1	92	29	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	LINC01128	ENSG00000228794.11	ENST00000445118.7:ENST00000670780.1:ENST00000659124.2:ENST00000688309.1:ENST00000666741.1:ENST00000685764.1:ENST00000657837.1:ENST00000691316.1	lncRNA	lncRNA	lncRNA	lncRNA	0	68	2	4.90222	5.376545	5.85087	0.0132767	0.0125132	0.0787251	0.0765738
chr12	420029	420128	5148385	0	+	0.525253	(0.523,0.58]	chr12	500517	10	INTRON	INTRON	CCDC77	ENSG00000120647.10	ENST00000540180.5:ENST00000422000.5:ENST00000543504.5:ENST00000540344.5:ENST00000412006.6:ENST00000239830.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	5.01677	5.37643	5.73609	0.0482765	0.0017613	0.144601	0.0211077
chr10	87520041	87520139	4541132	0	+	0.285714	[0,0.29]	chr10	433097	65	INTRON	INTRON	MINPP1	ENSG00000107789.16	ENST00000371994.8:ENST00000371996.9:ENST00000536010.1	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.1579	5.37639	5.59488	0.0269673	0.00215262	0.112113	0.0241612
chr11	17181697	17181797	5012842	0	-	0.27	[0,0.29]	chr11	484560	115	INTRON	INTRON	PIK3C2A	ENSG00000011405.14	ENST00000531428.1:ENST00000691414.1:ENST00000533645.1:ENST00000532035.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	62	2	5.1579	5.37639	5.59488	0.0269673	0.00215262	0.112113	0.0241612
chr4	108658446	108658545	2105154	0	+	0.262626	[0,0.29]	chr4	214082	4	INTRON	INTRON	OSTC	ENSG00000198856.13	ENST00000613215.4:ENST00000361564.9:ENST00000512478.2	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.1579	5.37639	5.59488	0.0269673	0.00215262	0.112113	0.0241612
chr2	177413870	177413970	962809	0	+	0.37	(0.36,0.39]	chr2	105590	178	INTRON	INTRON	AGPS	ENSG00000018510.18	ENST00000679459.1:ENST00000637633.2:ENST00000680770.1:ENST00000680705.1:ENST00000681752.1:ENST00000460342.2:ENST00000681565.1:ENST00000680893.1:ENST00000681032.1:ENST00000679421.1:ENST00000680910.1:ENST00000680677.1:ENST00000409888.1:ENST00000642466.2:ENST00000264167.11:ENST00000680155.1:ENST00000679478.1:ENST00000681449.1:ENST00000681891.1:ENST00000681028.1:ENST00000679639.1:ENST00000680028.1:ENST00000679994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	200	2	3.56132	5.376165	7.19101	0.00294244	0.00176912	0.0300062	0.0261505
chr16	85397233	85397332	6517043	0	+	0.656566	(0.58,1]	chr16	646391	379	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.08534	5.3761600000000005	5.66698	0.0102927	0.00549379	0.0684871	0.0454065
chr17	29084906	29085004	6875949	0	-	0.642857	(0.58,1]	chr17	697789	21	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000529578.5:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000546105.5:ENST00000527312.5:ENST00000531438.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	63	2	5.08534	5.3761600000000005	5.66698	0.0102927	0.00549379	0.0684871	0.0454065
chr21	45502123	45502222	7631326	0	+	0.717172	(0.58,1]	chr21	797812	41	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.08534	5.3761600000000005	5.66698	0.0102927	0.00549379	0.0684871	0.0454065
chr20	44402891	44402991	7482943	0	+	0.57	(0.523,0.58]	chr20	779641	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000682427.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	167	2	3.92088	5.375995	6.83111	0.0106834	8.07247e-5	0.0701326	0.00233145
chr2	72310876	72310976	1183030	0	-	0.32	(0.29,0.33]	chr2	128650	476	INTRON	INTRON	EXOC6B	ENSG00000144036.16	ENST00000272427.11:ENST00000490919.5:ENST00000471335.5:ENST00000634650.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	5.35847	5.3759049999999995	5.39334	0.0269557	0.00448059	0.112113	0.0398484
chr16	24712861	24712961	6425398	0	+	0.49	(0.485,0.523]	chr16	635728	715	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000566108.2	protein_coding	processed_transcript	protein_coding	processed_transcript	0	66	2	5.02573	5.375515	5.7253	0.0162644	0.00985879	0.0873195	0.0664239
chr22	46649019	46649118	7744668	0	+	0.50505	(0.485,0.523]	chr22	812052	107	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.02573	5.375515	5.7253	0.0162644	0.00985879	0.0873195	0.0664239
chr19	49991464	49991563	7397985	0	-	0.434343	(0.419,0.45]	chr19	769514	13	INTRON	INTRON	VRK3	ENSG00000105053.11	ENST00000316763.8:ENST00000377011.6:ENST00000599538.5:ENST00000596814.5:ENST00000601341.5:ENST00000594948.5:ENST00000601912.5:ENST00000594092.5:ENST00000593912.5:ENST00000600284.5:ENST00000593919.5:ENST00000594090.5:ENST00000596121.5:ENST00000424804.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	65	2	5.1405	5.375405000000001	5.61031	0.0550015	0.004032	0.153337	0.0371291
chr21	45133620	45133682	7629256	0	+	0.435484	(0.419,0.45]	chr21	797543	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	ADARB1	ENSG00000197381.17	ENST00000462214.5:ENST00000460734.5:ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5:ENST00000449478.1:ENST00000464215.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	65	2	5.1405	5.375405000000001	5.61031	0.0550015	0.004032	0.153337	0.0371291
chr3	51667776	51667875	1472218	0	+	0.434343	(0.419,0.45]	chr3	157989	45	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.1405	5.375405000000001	5.61031	0.0550015	0.004032	0.153337	0.0371291
chrX	123689883	123689982	8098975	0	-	0.424242	(0.419,0.45]	chrX	844539	28	INTRON	INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5:ENST00000433883.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	65	2	5.1405	5.375405000000001	5.61031	0.0550015	0.004032	0.153337	0.0371291
chr10	18554269	18554369	4642271	0	-	0.41	(0.39,0.419]	chr10	443321	19	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	4.64779	5.375405	6.10302	0.0273358	0.0120635	0.119337	0.0745226
chr7	101476085	101476185	3433125	0	+	0.52	(0.485,0.523]	chr7	332437	279	INTRON	INTRON	COL26A1	ENSG00000160963.14	ENST00000313669.12:ENST00000613501.1	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.21769	5.375385	5.53308	0.0359739	0.00304306	0.127853	0.0306636
chr18	77018077	77018177	7180495	0	-	0.41	(0.39,0.419]	chr18	730157	4	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000580402.5:ENST00000580473.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000495162.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	83	2	4.39622	5.375204999999999	6.35419	0.042449	0.0079671	0.149195	0.0596361
chr20	31720961	31721057	7543014	0	-	0.520833	(0.485,0.523]	chr20	787270	17	INTRON	INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	63	2	5.35167	5.37518	5.39869	0.0294163	0.00421243	0.116079	0.0380601
chr15	84566924	84567023	6343596	0	-	0.40404	(0.39,0.419]	chr15	625369	31	INTRON	INTRON	UBE2Q2P1	ENSG00000189136.9	ENST00000354771.8:ENST00000339094.5:ENST00000561403.6:ENST00000558251.5:ENST00000559871.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	70	2	4.86193	5.375095	5.88826	0.0182739	0.0169925	0.0958352	0.0889149
chr8	41946512	41946590	3968634	0	-	0.410256	(0.39,0.419]	chr8	379413	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	KAT6A	ENSG00000083168.11	ENST00000406337.6:ENST00000265713.8:ENST00000396930.4:ENST00000649817.1:ENST00000648335.1:ENST00000649827.1:ENST00000418721.5:ENST00000485568.5:ENST00000647809.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	70	2	4.86193	5.375095	5.88826	0.0182739	0.0169925	0.0958352	0.0889149
chr18	45901746	45901842	7153462	0	-	0.4375	(0.419,0.45]	chr18	727254	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	EPG5	ENSG00000152223.16	ENST00000696483.1:ENST00000696484.1:ENST00000282041.11:ENST00000587884.2:ENST00000590884.6:ENST00000592272.6:ENST00000696485.1:ENST00000696489.1:ENST00000586655.2:ENST00000696490.1:ENST00000696482.1:ENST00000585906.5:ENST00000696785.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	65	2	5.30548	5.374975	5.44447	0.0364384	0.00792071	0.128173	0.057762
chr11	94457823	94457921	5108082	0	-	0.520408	(0.485,0.523]	chr11	496197	11	INTRON	INTRON	MRE11	ENSG00000020922.13	ENST00000323929.8:ENST00000407439.7:ENST00000323977.7:ENST00000393241.8	protein_coding	protein_coding	protein_coding	protein_coding	1	138	2	4.31177	5.374874999999999	6.43798	0.00469187	0.00101298	0.0447158	0.0143256
chr10	79114818	79114918	4532503	0	+	0.64	(0.58,1]	chr10	432420	452	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	140	2	3.79235	5.37487	6.95739	0.00302484	7.23847e-4	0.0305643	0.0158739
chr17	340952	341052	6821698	0	-	0.68	(0.58,1]	chr17	689626	4	SS5_PROX	SS5_PROX:INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000577079.5:ENST00000573780.5:ENST00000575130.5:ENST00000575634.5	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	4.58025	5.37485	6.16945	0.0172566	0.00387582	0.0923809	0.0401256
chr20	33661442	33661534	7546037	0	-	0.521739	(0.485,0.523]	chr20	787635	7	INTRON	INTRON	NECAB3	ENSG00000125967.17	ENST00000375238.8:ENST00000246190.11:ENST00000488489.5:ENST00000606525.5:ENST00000483813.5:ENST00000485399.5:ENST00000485976.5:ENST00000478237.5:ENST00000494174.5:ENST00000463246.5:ENST00000480994.5:ENST00000606690.5:ENST00000439478.5:ENST00000607805.5:ENST00000498353.5:ENST00000493590.1:ENST00000606106.1:ENST00000606699.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	64	2	5.01719	5.37485	5.73251	0.0480495	0.00184599	0.144601	0.0217471
chr9	111639639	111639739	4218529	0	+	0.3	(0.29,0.33]	chr9	400127	75	INTRON	INTRON	DNAJC25:DNAJC25-GNG10	ENSG00000059769.20:ENSG00000244115.1	ENST00000313525.4:ENST00000447096.1:ENST00000463589.5:ENST00000374294.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	64	2	5.19216	5.374765	5.55737	0.0196268	0.00712176	0.095549	0.0541241
chr3	13205225	13205325	1691194	0	-	0.47	(0.45,0.485]	chr3	176566	407	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	1	141	2	4.46808	5.374689999999999	6.2813	0.00719875	7.25143e-4	0.056408	0.0113618
chr10	124662390	124662490	4778887	0	-	0.57	(0.523,0.58]	chr10	456963	384	INTRON	INTRON	FAM53B	ENSG00000189319.14	ENST00000337318.8:ENST00000392754.7	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	4.905	5.374365	5.84373	0.0563605	0.00133116	0.154188	0.0173248
chr13	113053229	113053324	5656168	0	+	0.515789	(0.485,0.523]	chr13	555185	6	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	5.19749	5.374015	5.55054	0.0215787	0.00672953	0.100612	0.0519464
chr3	4340045	4340145	1676551	0	-	0.52	(0.485,0.523]	chr3	175311	2709	INTRON	INTRON	SUMF1	ENSG00000144455.14	ENST00000448413.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	64	2	5.19749	5.374015	5.55054	0.0215787	0.00672953	0.100612	0.0519464
chr11	70813966	70814066	5062423	0	-	0.65	(0.58,1]	chr11	492713	64	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	5.31036	5.37394	5.43752	0.0156166	0.00312721	0.0849828	0.0311915
chr7	143384938	143385035	3510754	0	+	0.618557	(0.58,1]	chr7	338486	3	INTRON	INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	61	2	5.31036	5.37394	5.43752	0.0156166	0.00312721	0.0849828	0.0311915
chr4	70759326	70759426	2054921	0	+	0.36	(0.33,0.36]	chr4	209984	173	INTRON	INTRON	RUFY3	ENSG00000018189.13	ENST00000503876.5:ENST00000417478.6:ENST00000381006.8:ENST00000226328.8:ENST00000513597.5:ENST00000502653.5	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.17152	5.37393	5.57634	0.0237329	0.00887848	0.10525	0.0618231
chr12	132780597	132780697	5540257	0	-	0.55	(0.523,0.58]	chr12	546770	4	SS5_PROX	SS5_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	63	2	5.35452	5.373895	5.39327	0.0277354	0.00453096	0.112851	0.0400651
chr20	49184327	49184426	7572968	0	-	0.565657	(0.523,0.58]	chr20	791334	47	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.35452	5.373895	5.39327	0.0277354	0.00453096	0.112851	0.0400651
chr6	158544242	158544341	3063735	0	+	0.535354	(0.523,0.58]	chr6	297682	70	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.35452	5.373895	5.39327	0.0277354	0.00453096	0.112851	0.0400651
chr9	134343426	134343526	4260857	0	+	0.54	(0.523,0.58]	chr9	406311	164	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	63	2	5.35452	5.373895	5.39327	0.0277354	0.00453096	0.112851	0.0400651
chr9	135839259	135839358	4431139	0	-	0.474747	(0.45,0.485]	chr9	423507	113	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	1	142	2	4.55802	5.3737200000000005	6.18942	0.00844217	5.63543e-4	0.0617623	0.00950156
chr1	94462793	94462892	187297	0	+	0.444444	(0.419,0.45]	chr1	20299	38	INTRON	INTRON	ABCD3	ENSG00000117528.14	ENST00000370214.9:ENST00000647998.2:ENST00000315713.5:ENST00000468860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	4.98767	5.373514999999999	5.75936	0.0669167	0.00285253	0.16272	0.0294017
chr7	127743695	127743795	3469153	0	+	0.43	(0.419,0.45]	chr7	335380	219	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	4.98767	5.373514999999999	5.75936	0.0669167	0.00285253	0.16272	0.0294017
chrX	130222075	130222175	8102194	0	-	0.44	(0.419,0.45]	chrX	844940	12	INTRON	INTRON	ZNF280C	ENSG00000056277.16	ENST00000370978.9:ENST00000447817.1	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	4.98767	5.373514999999999	5.75936	0.0669167	0.00285253	0.16272	0.0294017
chr20	44360341	44360441	7482511	0	+	0.48	(0.45,0.485]	chr20	779618	41	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5	protein_coding	protein_coding	protein_coding	protein_coding	2	374	2	4.99913	5.37347	5.74781	0.00154362	1.58252e-5	0.02427	7.12006e-4
chr15	50673139	50673239	6255877	0	-	0.49	(0.485,0.523]	chr15	616442	97	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5	protein_coding	protein_coding	protein_coding	protein_coding	1	138	2	4.43422	5.37318	6.31214	0.00589975	7.18351e-4	0.0506158	0.0112783
chrX	44950483	44950583	7872446	0	+	0.31	(0.29,0.33]	chrX	825082	761	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	63	2	5.34562	5.373065	5.40051	0.0252356	0.00501126	0.108065	0.0429092
chr7	72721558	72721657	3599789	0	-	0.474747	(0.45,0.485]	chr7	347162	74	INTRON	INTRON	TYW1B	ENSG00000277149.5	ENST00000612372.4:ENST00000620995.5	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	4.9538	5.3728549999999995	5.79191	0.0569772	0.00183113	0.154343	0.0216571
chr18	11143629	11143729	7119874	0	-	0.49	(0.485,0.523]	chr18	724490	771	INTRON	INTRON	PIEZO2	ENSG00000154864.14	ENST00000302079.10:ENST00000674853.1:ENST00000383408.7:ENST00000503781.7:ENST00000580640.5:ENST00000582913.5:ENST00000686869.1:ENST00000688929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	63	2	5.17012	5.372675	5.57523	0.038581	0.00274261	0.131324	0.028553
chr2	162288855	162288952	1294586	0	-	0.381443	(0.36,0.39]	chr2	139034	1	INTRON	INTRON	IFIH1	ENSG00000115267.9	ENST00000649979.2:ENST00000679938.1:ENST00000649554.1:ENST00000648433.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	65	2	5.04949	5.372615	5.69574	0.0563927	0.00299965	0.154188	0.030427
chr9	131430559	131430659	4257983	0	+	0.46	(0.45,0.485]	chr9	405614	3	SS5_PROX	SS5_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	1	141	2	4.18161	5.372485	6.56336	0.00436001	0.00158459	0.0427656	0.0196418
chr13	113033075	113033174	5655960	0	+	0.666667	(0.58,1]	chr13	555157	62	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486806.1:ENST00000473345.5	protein_coding	protein_coding	protein_coding	protein_coding	1	131	2	4.0743	5.37238	6.67046	0.00136577	0.00135763	0.0224546	0.0176851
chr3	129907233	129907331	1567299	0	+	0.469388	(0.45,0.485]	chr3	165955	57	EXON_LNCRNA	EXON_LNCRNA:INTRON	TMCC1-DT	ENSG00000271270.8	ENST00000605830.6:ENST00000686063.1:ENST00000690344.1:ENST00000605698.2:ENST00000671446.1:ENST00000604747.1	lncRNA	lncRNA	lncRNA	lncRNA	0	65	2	5.12938	5.371845	5.61431	0.0217589	0.00873194	0.100615	0.0612699
chr6	147213363	147213463	3026970	0	+	0.48	(0.45,0.485]	chr6	295700	69	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000546097.5:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.12938	5.371845	5.61431	0.0217589	0.00873194	0.100615	0.0612699
chr20	47287684	47287784	7570195	0	-	0.53	(0.523,0.58]	chr20	791047	4	SS3_PROX	SS3_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	184	2	4.01591	5.3718	6.72769	0.00275419	6.36322e-4	0.0332418	0.0103364
chr7	47363781	47363881	3587429	0	-	0.51	(0.485,0.523]	chr7	346030	171	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	186	2	4.11723	5.37163	6.62603	0.00330946	4.86985e-4	0.0368376	0.00859019
chr12	123654423	123654523	5347075	0	+	0.41	(0.39,0.419]	chr12	522779	1	SS3_PROX	SS3_PROX:INTRON	GTF2H3	ENSG00000111358.14	ENST00000618160.4:ENST00000542279.5:ENST00000543341.7:ENST00000228955.11:ENST00000538845.5:ENST00000539994.5:ENST00000537695.5:ENST00000536375.5:ENST00000543415.5:ENST00000538533.5:ENST00000543154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	71	2	4.63037	5.371465000000001	6.11256	0.0963077	0.00108325	0.189169	0.0149525
chr9	114200406	114200506	4226156	0	+	0.4	(0.39,0.419]	chr9	400776	40	INTRON	INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8:ENST00000451716.5:ENST00000494090.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	71	2	4.63037	5.371465000000001	6.11256	0.0963077	0.00108325	0.189169	0.0149525
chr16	83921260	83921359	6513137	0	+	0.474747	(0.45,0.485]	chr16	646141	59	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	64	2	5.06138	5.371465	5.68155	0.0492008	0.00241241	0.146142	0.0261086
chr16	29272712	29272812	6433564	0	+	0.34	(0.33,0.36]	chr16	636745	206	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	1	147	2	3.94543	5.371205	6.79698	0.0031765	0.00296844	0.0346919	0.0316024
chr6	131871769	131871869	3008676	0	+	0.37	(0.36,0.39]	chr6	294249	3	SS3_PROX	SS3_PROX:INTRON	ENPP1	ENSG00000197594.14	ENST00000647893.1:ENST00000513998.5:ENST00000650437.1:ENST00000459624.1:ENST00000647981.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	395	2	4.85339	5.371005	5.88862	0.00244883	1.47124e-5	0.0312315	6.74602e-4
chr9	5919588	5919683	4273351	0	-	0.273684	[0,0.29]	chr9	408175	7	UTR3	UTR3:EXON_MRNA:INTRON	KIAA2026	ENSG00000183354.12	ENST00000436015.6:ENST00000399933.8:ENST00000381461.6:ENST00000540714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	62	2	5.27002	5.37087	5.47172	0.0158465	0.0048238	0.0859576	0.0417661
chr1	246115605	246115705	701938	0	-	0.46	(0.45,0.485]	chr1	82410	193	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	5.23735	5.370785	5.50422	0.0257993	0.00687715	0.109555	0.0526888
chr10	18563563	18563663	4642364	0	-	0.4	(0.39,0.419]	chr10	443321	112	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.10551	5.37068	5.63585	0.025023	0.0112089	0.10758	0.071709
chr2	168604302	168604402	945662	0	+	0.41	(0.39,0.419]	chr2	103975	209	INTRON	INTRON	CERS6	ENSG00000172292.15	ENST00000392687.4:ENST00000305747.11	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.10551	5.37068	5.63585	0.025023	0.0112089	0.10758	0.071709
chr7	158916285	158916383	3523152	0	+	0.459184	(0.45,0.485]	chr7	340293	16	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	176	2	4.25873	5.370515	6.4823	0.00628767	2.88849e-4	0.0523832	0.00590733
chr1	243480047	243480147	370435	0	+	0.43	(0.419,0.45]	chr1	41881	38	INTRON	INTRON	SDCCAG8	ENSG00000054282.16	ENST00000366541.8:ENST00000435549.1	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	4.98054	5.370145000000001	5.75975	0.0231013	0.0154548	0.102982	0.0869771
chr16	85400631	85400731	6517077	0	+	0.44	(0.419,0.45]	chr16	646391	413	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	4.98054	5.370145000000001	5.75975	0.0231013	0.0154548	0.102982	0.0869771
chr17	37458587	37458687	6727321	0	+	0.43	(0.419,0.45]	chr17	676053	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TADA2A	ENSG00000276234.5	ENST00000615182.5:ENST00000620628.4:ENST00000614122.4:ENST00000620367.4:ENST00000612272.4:ENST00000615328.4:ENST00000620086.4:ENST00000619777.4:ENST00000619335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	68	2	4.98054	5.370145000000001	5.75975	0.0231013	0.0154548	0.102982	0.0869771
chr10	45857891	45857991	4678148	0	-	0.55	(0.523,0.58]	chr10	446183	26	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000610690.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	0	63	2	5.1205	5.37013	5.61976	0.0416463	0.00236826	0.136301	0.0259199
chr9	93599870	93599970	4183888	0	+	0.53	(0.523,0.58]	chr9	397705	226	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.1205	5.37013	5.61976	0.0416463	0.00236826	0.136301	0.0259199
chr16	50341776	50341876	6587930	0	-	0.36	(0.33,0.36]	chr16	658565	13	INTRON	INTRON	BRD7	ENSG00000166164.16	ENST00000394688.8:ENST00000394689.2:ENST00000475877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	5.11012	5.36998	5.62984	0.04702	0.00313405	0.143232	0.0312116
chr19	944015	944114	7185286	0	+	0.59596	(0.58,1]	chr19	730741	109	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	138	2	3.82654	5.36995	6.91336	0.00275362	7.98131e-4	0.0285628	0.0167692
chr3	39148207	39148305	1739971	0	-	0.591837	(0.58,1]	chr3	180188	11	INTRON	INTRON	CSRNP1	ENSG00000144655.15	ENST00000273153.10:ENST00000514182.1	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.14497	5.36972	5.59447	0.0117666	0.00474658	0.0737098	0.0413976
chr9	134338336	134338436	4260806	0	+	0.65	(0.58,1]	chr9	406311	113	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	62	2	5.14497	5.36972	5.59447	0.0117666	0.00474658	0.0737098	0.0413976
chr17	242137	242237	6820691	0	-	0.39	(0.36,0.39]	chr17	689558	77	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000570893.5:ENST00000576001.5:ENST00000570954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	5.33106	5.369675	5.40829	0.0383628	0.00581205	0.131324	0.0472624
chrX	9567342	9567442	7843473	0	+	0.57	(0.523,0.58]	chrX	822423	64	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	63	2	5.30515	5.369630000000001	5.43411	0.026041	0.00509102	0.109673	0.0433513
chr16	3772270	3772368	6538837	0	-	0.336735	(0.33,0.36]	chr16	650341	9	INTRON	INTRON	CREBBP	ENSG00000005339.15	ENST00000262367.10:ENST00000382070.7:ENST00000570939.2	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.27557	5.3694749999999996	5.46338	0.0281891	0.00707628	0.114124	0.0540197
chr1	6836285	6836385	8960	0	+	0.41	(0.39,0.419]	chr1	1849	107	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12:ENST00000490738.5:ENST00000476163.5:ENST00000473578.5:ENST00000557126.5:ENST00000467404.6:ENST00000461311.1:ENST00000486138.1:ENST00000482934.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	64	2	5.28643	5.369445000000001	5.45246	0.041475	0.00529344	0.136301	0.044517
chr7	222646	222746	3305881	0	+	0.67	(0.58,1]	chr7	320161	133	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	155	2	3.63877	5.368914999999999	7.09906	0.0127766	1.35452e-5	0.0769397	6.38288e-4
chr3	45724241	45724341	1461395	0	+	0.4	(0.39,0.419]	chr3	155964	3	INTRON	INTRON	SACM1L	ENSG00000211456.13	ENST00000455997.5:ENST00000418611.5:ENST00000672477.1:ENST00000441228.5:ENST00000389061.10:ENST00000672858.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	64	2	5.32971	5.368715	5.40772	0.0390381	0.00585126	0.131575	0.0474117
chr6	157149739	157149837	3053204	0	+	0.418367	(0.39,0.419]	chr6	297081	9	EXON_MRNA	EXON_MRNA:INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000635849.1:ENST00000637904.1:ENST00000637810.1:ENST00000637015.1:ENST00000636426.1:ENST00000637568.1:ENST00000635957.1:ENST00000400790.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	64	2	5.32971	5.368715	5.40772	0.0390381	0.00585126	0.131575	0.0474117
chr17	82150759	82150859	6987881	0	-	0.63	(0.58,1]	chr17	714577	150	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000419322.6:ENST00000392346.6:ENST00000582040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	61	2	5.0607	5.3685600000000004	5.67642	0.029633	0.00117039	0.116079	0.0157899
chr20	36313504	36313604	7469122	0	+	0.63	(0.58,1]	chr20	777805	66	INTRON	INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.0607	5.3685600000000004	5.67642	0.029633	0.00117039	0.116079	0.0157899
chr4	3367584	3367684	2005112	0	+	0.67	(0.58,1]	chr4	204663	242	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	61	2	5.0607	5.3685600000000004	5.67642	0.029633	0.00117039	0.116079	0.0157899
chr1	6033392	6033491	6770	0	+	0.515152	(0.485,0.523]	chr1	1420	56	INTRON	INTRON	KCNAB2	ENSG00000069424.16	ENST00000655548.1:ENST00000378111.6:ENST00000378097.6:ENST00000666163.1:ENST00000671676.1:ENST00000658883.1:ENST00000658691.1:ENST00000435937.6:ENST00000445501.6:ENST00000478098.5:ENST00000653262.1:ENST00000668706.1:ENST00000389632.9:ENST00000654144.1:ENST00000341524.6:ENST00000462676.3:ENST00000428161.6:ENST00000352527.6:ENST00000663169.1:ENST00000653635.1:ENST00000661248.1:ENST00000656198.1:ENST00000602612.5:ENST00000481789.2:ENST00000656746.1:ENST00000665338.1:ENST00000666299.1:ENST00000652845.1:ENST00000655703.1:ENST00000669250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	63	2	5.12092	5.368555	5.61619	0.0414411	0.00247695	0.136301	0.0266492
chr16	89431055	89431155	6661144	0	-	0.44	(0.419,0.45]	chr16	666748	4	SS5_PROX	SS5_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	197	2	3.86885	5.368495	6.86814	0.00384173	0.00141498	0.0399957	0.0181168
chr21	45208535	45208635	7630026	0	+	0.5	(0.485,0.523]	chr21	797621	34	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5:ENST00000629643.2:ENST00000360697.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	138	2	4.49177	5.368309999999999	6.24485	0.00665813	6.09927e-4	0.0540577	0.0100466
chr6	169659818	169659918	3304469	0	-	0.49	(0.485,0.523]	chr6	319895	3	SS3_PROX	SS3_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2:ENST00000467418.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	138	2	4.20112	5.368095	6.53507	0.00392199	0.00137422	0.0404814	0.0177822
chr17	14046300	14046400	6859105	0	-	0.51	(0.485,0.523]	chr17	694963	115	INTRON	INTRON	COX10-DT	ENSG00000236088.11	ENST00000582752.7:ENST00000690301.1:ENST00000662986.1:ENST00000686809.1:ENST00000686296.1:ENST00000602539.2:ENST00000602743.1:ENST00000661551.1:ENST00000653162.1:ENST00000664394.1:ENST00000664612.1:ENST00000652924.1:ENST00000656685.1:ENST00000660804.1:ENST00000449363.2:ENST00000656963.1:ENST00000659114.1	lncRNA	lncRNA	lncRNA	lncRNA	0	63	2	5.30159	5.36806	5.43453	0.0258944	0.00529578	0.109555	0.044517
chr22	50681480	50681577	7754984	0	+	0.505155	(0.485,0.523]	chr22	812716	17	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	63	2	5.30159	5.36806	5.43453	0.0258944	0.00529578	0.109555	0.044517
chr3	10191588	10191687	1406794	0	+	0.50505	(0.485,0.523]	chr3	151140	132	INTRON	INTRON	IRAK2	ENSG00000134070.5	ENST00000256458.5	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.30159	5.36806	5.43453	0.0258944	0.00529578	0.109555	0.044517
chr9	120509862	120509962	4385040	0	-	0.38	(0.36,0.39]	chr9	418390	180	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000690814.1:ENST00000686842.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5:ENST00000690474.1:ENST00000693137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	64	2	5.19713	5.367839999999999	5.53855	0.0462258	0.00432809	0.143138	0.0389438
chr6	30317575	30317675	3116878	0	-	0.58	(0.523,0.58]	chr6	302392	27	INTRON	INTRON	HCG18	ENSG00000231074.10	ENST00000665953.1:ENST00000670397.1:ENST00000659132.1:ENST00000659836.1:ENST00000669374.1:ENST00000653541.1:ENST00000670071.1:ENST00000666294.1:ENST00000657247.1:ENST00000654996.1:ENST00000653301.1:ENST00000658695.1:ENST00000664861.1:ENST00000668974.1:ENST00000654915.1:ENST00000660593.1:ENST00000687430.1:ENST00000656629.1:ENST00000602550.5:ENST00000687815.1:ENST00000449544.6:ENST00000426882.6:ENST00000438412.6:ENST00000602698.6:ENST00000454129.5:ENST00000444126.5:ENST00000602290.2:ENST00000412685.8:ENST00000602861.6:ENST00000454269.6:ENST00000686575.1:ENST00000687471.1:ENST00000691282.1:ENST00000413358.6:ENST00000602498.1	lncRNA	lncRNA	lncRNA	lncRNA	1	139	2	4.09254	5.36783	6.64312	0.00323048	0.00180302	0.0362983	0.0215053
chr9	77998023	77998123	4321515	0	-	0.61	(0.58,1]	chr9	412907	753	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	1	151	2	4.01288	5.36754	6.7222	0.00608214	4.79419e-5	0.0515813	0.00159846
chr9	34087956	34088054	4295284	0	-	0.44898	(0.419,0.45]	chr9	410476	17	UTR3	UTR3:EXON_MRNA	DCAF12	ENSG00000198876.13	ENST00000361264.9	protein_coding	protein_coding	protein_coding	protein_coding	1	147	2	4.43095	5.367375	6.3038	0.00990101	0.00105051	0.0671959	0.0146865
chr12	3226546	3226646	5160042	0	+	0.44	(0.419,0.45]	chr12	501358	108	INTRON	INTRON	TSPAN9	ENSG00000011105.14	ENST00000537971.5:ENST00000444315.6:ENST00000011898.10:ENST00000649909.1:ENST00000640568.1:ENST00000407263.2:ENST00000431374.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	75	2	4.63955	5.3673649999999995	6.09518	0.0293406	0.0138177	0.125102	0.0803169
chr15	82382251	82382351	6165733	0	+	0.43	(0.419,0.45]	chr15	606819	265	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	75	2	4.63955	5.3673649999999995	6.09518	0.0293406	0.0138177	0.125102	0.0803169
chr6	47269277	47269377	3144099	0	-	0.32	(0.29,0.33]	chr6	306750	154	INTRON	INTRON	TNFRSF21	ENSG00000146072.6	ENST00000296861.2	protein_coding	protein_coding	protein_coding	protein_coding	1	160	2	5.14052	5.367290000000001	5.59406	0.0184845	9.41939e-5	0.0928429	0.00261955
chr10	18554169	18554269	4642270	0	-	0.43	(0.419,0.45]	chr10	443321	18	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	4.38804	5.367185	6.34633	0.0451818	0.00923958	0.154539	0.0644666
chr3	177037749	177037842	1959781	0	-	0.419355	(0.419,0.45]	chr3	199211	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000636864.1:ENST00000457928.7:ENST00000430069.5:ENST00000637659.1:ENST00000673974.1:ENST00000631253.2:ENST00000352800.10:ENST00000422442.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	198	2	4.01976	5.3670100000000005	6.71426	0.0050028	9.47534e-4	0.0463896	0.0136257
chr21	38808363	38808463	7620626	0	+	0.46	(0.45,0.485]	chr21	796141	1	SS5_PROX	SS5_PROX:INTRON	ETS2	ENSG00000157557.13	ENST00000360214.8:ENST00000665212.1:ENST00000667466.1:ENST00000360938.8:ENST00000432278.5:ENST00000666778.1:ENST00000653642.1	protein_coding	protein_coding	protein_coding	protein_coding	2	200	2	3.38568	5.367	7.34832	0.00400963	9.95275e-4	0.0371192	0.0189547
chr5	148393316	148393416	2562862	0	+	0.38	(0.36,0.39]	chr5	254487	34	INTRON	INTRON	FBXO38	ENSG00000145868.17	ENST00000296701.10:ENST00000503613.5:ENST00000340253.10:ENST00000394370.7:ENST00000508326.5:ENST00000509411.5:ENST00000511080.5:ENST00000504971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	147	2	4.58055	5.366985	6.15342	0.0108737	6.51031e-4	0.0707085	0.0105193
chr16	85510585	85510685	6518177	0	+	0.58	(0.523,0.58]	chr16	646391	1513	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	4.60868	5.3667300000000004	6.12478	0.0226775	0.00829271	0.108193	0.0610772
chr10	79440120	79440219	4720801	0	-	0.464646	(0.45,0.485]	chr10	450462	70	INTRON	INTRON	ZCCHC24	ENSG00000165424.7	ENST00000372336.4:ENST00000372333.3	protein_coding	protein_coding	protein_coding	protein_coding	0	75	2	4.59225	5.36672	6.14119	0.0259502	0.00917101	0.116361	0.064285
chr3	12964804	12964903	1688777	0	-	0.484848	(0.45,0.485]	chr3	176520	38	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	171	2	4.06578	5.3666	6.66742	0.0089136	1.70557e-4	0.0637233	0.00403679
chr19	9650361	9650460	7327883	0	-	0.333333	(0.33,0.36]	chr19	757353	87	UTR3	UTR3:EXON_MRNA	ZNF562	ENSG00000171466.10	ENST00000453372.7:ENST00000293648.8	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	4.80497	5.36655	5.92813	0.0188359	0.0135535	0.0980631	0.0793558
chr2	239278879	239278979	1391497	0	-	0.57	(0.523,0.58]	chr2	148740	273	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	64	2	5.14602	5.36641	5.5868	0.020474	0.00734367	0.0979776	0.0550721
chr22	46290099	46290199	7743251	0	+	0.58	(0.523,0.58]	chr22	811891	2	SS5_PROX	SS5_PROX:INTRON	TTC38	ENSG00000075234.17	ENST00000381031.8:ENST00000451998.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	64	2	5.14602	5.36641	5.5868	0.020474	0.00734367	0.0979776	0.0550721
chr3	129394195	129394295	1911559	0	-	0.55	(0.523,0.58]	chr3	194157	4	SS3_PROX	SS3_PROX:INTRON	RPL32P3	ENSG00000251474.7	ENST00000510078.5:ENST00000507287.5:ENST00000687239.1:ENST00000514355.5:ENST00000507238.5:ENST00000515866.5:ENST00000499631.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	64	2	5.14602	5.36641	5.5868	0.020474	0.00734367	0.0979776	0.0550721
chr16	69043218	69043318	6480832	0	+	0.52	(0.485,0.523]	chr16	643682	24	INTRON	INTRON	TANGO6	ENSG00000103047.8	ENST00000261778.2:ENST00000562000.5:ENST00000568361.5:ENST00000561931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	139	2	4.58284	5.36639	6.14994	0.00788098	4.69507e-4	0.059464500000000003	0.00833265
chr11	78505289	78505389	5090781	0	-	0.33	(0.29,0.33]	chr11	495346	117	INTRON	INTRON	NARS2	ENSG00000137513.11	ENST00000695341.1:ENST00000281038.10:ENST00000695343.1:ENST00000695342.1:ENST00000695344.1:ENST00000529771.2:ENST00000695345.1:ENST00000695115.1:ENST00000695348.1:ENST00000695114.1:ENST00000695346.1:ENST00000695347.1:ENST00000695349.1:ENST00000695116.1:ENST00000695352.1:ENST00000695353.1:ENST00000695351.1:ENST00000695350.1:ENST00000695354.1:ENST00000695355.1:ENST00000528850.5:ENST00000695357.1:ENST00000695366.1:ENST00000695356.1:ENST00000695358.1:ENST00000695359.1:ENST00000695360.1:ENST00000695361.1:ENST00000695362.1:ENST00000525345.6:ENST00000529880.1:ENST00000695364.1:ENST00000695365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	74	2	4.59993	5.366009999999999	6.13209	0.0243639	0.00731667	0.113231	0.0568523
chr9	114074721	114074790	4373776	0	-	0.637681	(0.58,1]	chr9	418050	2	SS5_PROX	SS5_PROX:INTRON	AMBP	ENSG00000106927.12	ENST00000265132.8:ENST00000540645.5:ENST00000466610.6:ENST00000603230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	128	2	4.20999	5.365985	6.52198	0.00186556	9.16802e-4	0.0269723	0.0133866
chr10	72061092	72061190	4707389	0	-	0.469388	(0.45,0.485]	chr10	448659	22	UTR3	UTR3:EXON_MRNA	SPOCK2	ENSG00000107742.14	ENST00000373109.7:ENST00000317376.8	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	4.7111	5.365895	6.02069	0.0781398	0.00101549	0.175203	0.0143256
chr17	46653743	46653843	6745642	0	+	0.51	(0.485,0.523]	chr17	679410	101	INTRON	INTRON	NSF	ENSG00000073969.18	ENST00000398238.8:ENST00000575068.5	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	4.96239	5.36584	5.76929	0.0518747	0.00167976	0.148503	0.0203806
chr1	227635453	227635553	356810	0	+	0.46	(0.45,0.485]	chr1	40221	525	INTRON	INTRON	ZNF678	ENSG00000181450.18	ENST00000608949.5:ENST00000465266.1:ENST00000343776.10:ENST00000440339.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	5.2551	5.36579	5.47648	0.0373953	0.0039628	0.130656	0.0368027
chr13	113005677	113005777	5655680	0	+	0.47	(0.45,0.485]	chr13	555138	33	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	67	2	4.95056	5.36576	5.78096	0.0166968	0.0127826	0.0884836	0.0773423
chr20	47287879	47287974	7570197	0	-	0.431579	(0.419,0.45]	chr20	791048	2	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	148	2	4.5166	5.365690000000001	6.21478	0.011428	8.38103e-4	0.0723462	0.0125889
chr22	48700548	48700648	7751273	0	+	0.62	(0.58,1]	chr22	812283	68	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	78	2	4.3962	5.365285	6.33437	0.0250928	0.00276493	0.114418	0.0332418
chr15	78450852	78450952	6158245	0	+	0.35	(0.33,0.36]	chr15	606043	106	INTRON	INTRON	IREB2	ENSG00000136381.13	ENST00000560840.5:ENST00000559215.5:ENST00000258886.13:ENST00000558525.5:ENST00000560440.5:ENST00000558570.5:ENST00000560454.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	65	2	4.95163	5.36528	5.77893	0.0583482	0.00218403	0.155373	0.0244273
chr9	2036173	2036273	4105471	0	+	0.36	(0.33,0.36]	chr9	390943	27	INTRON	INTRON	SMARCA2	ENSG00000080503.24	ENST00000357248.8:ENST00000450198.6:ENST00000634287.1:ENST00000637103.1:ENST00000349721.8:ENST00000636559.1:ENST00000636903.1:ENST00000457226.2:ENST00000382194.6:ENST00000439732.6:ENST00000634760.1:ENST00000637806.1:ENST00000382203.5:ENST00000491574.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	65	2	4.95163	5.36528	5.77893	0.0583482	0.00218403	0.155373	0.0244273
chr11	96006818	96006918	5110203	0	-	0.52	(0.485,0.523]	chr11	496560	147	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6:ENST00000618849.1	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	4.60518	5.365195	6.12521	0.0233371	0.00823189	0.110098	0.0608959
chr7	100580873	100580953	3654725	0	-	0.4875	(0.485,0.523]	chr7	352213	1	INTRON	INTRON	LRCH4	ENSG00000077454.17	ENST00000310300.11:ENST00000497245.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	74	2	4.60518	5.365195	6.12521	0.0233371	0.00823189	0.110098	0.0608959
chr5	134000097	134000197	2764120	0	-	0.52	(0.485,0.523]	chr5	270978	67	INTRON	INTRON	VDAC1	ENSG00000213585.11	ENST00000265333.8:ENST00000395044.7:ENST00000395047.6:ENST00000425992.2:ENST00000466080.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	137	2	4.35375	5.36509	6.37643	0.0052506	9.01016e-4	0.0476984	0.0132389
chr11	70768164	70768264	5061963	0	-	0.56	(0.523,0.58]	chr11	492701	503	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	70	2	4.7629	5.36482	5.96674	0.0167014	0.0109075	0.0917029	0.0707085
chr10	31927883	31927982	4661826	0	-	0.535354	(0.523,0.58]	chr10	444985	170	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.06957	5.36458	5.65959	0.0448011	0.0021416	0.140478	0.0240825
chr22	25165022	25165122	7700685	0	+	0.47	(0.45,0.485]	chr22	805914	522	INTRON	INTRON	KIAA1671	ENSG00000197077.14	ENST00000358431.8:ENST00000406486.8:ENST00000494730.2:ENST00000401395.1:ENST00000637069.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	63	2	5.20906	5.3644750000000005	5.51989	0.0399616	0.00357389	0.133954	0.0342681
chr5	59840202	59840302	2672543	0	-	0.48	(0.45,0.485]	chr5	264372	427	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000502484.6:ENST00000405053.7:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	63	2	5.34301	5.364269999999999	5.38553	0.0328801	0.00490471	0.122593	0.0422077
chr10	75799711	75799810	4524164	0	+	0.494949	(0.485,0.523]	chr10	432282	163	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	137	2	4.39455	5.3642199999999995	6.33389	0.00567224	8.03516e-4	0.0496143	0.012189
chr17	28333023	28333123	6873279	0	-	0.39	(0.36,0.39]	chr17	696938	3	SS3_PROX	SS3_PROX:INTRON	IFT20	ENSG00000109083.14	ENST00000588477.5:ENST00000395418.8:ENST00000579419.5:ENST00000357896.7:ENST00000585089.5:ENST00000585313.5:ENST00000578122.5:ENST00000578985.5:ENST00000582797.5:ENST00000322326.12:ENST00000577498.1:ENST00000580357.1:ENST00000578547.1:ENST00000580991.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	64	2	5.31441	5.364155	5.4139	0.0340874	0.00715023	0.125059	0.0541241
chr10	132554957	132555057	4617010	0	+	0.54	(0.523,0.58]	chr10	441139	164	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.25403	5.363925	5.47382	0.0244797	0.00573579	0.106683	0.0467736
chr14	104875055	104875155	5925962	0	+	0.65	(0.58,1]	chr14	579942	61	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	4.6951	5.363905	6.03271	0.0521567	4.18183e-4	0.148503	0.00770005
chr10	74427673	74427773	4514456	0	+	0.35	(0.33,0.36]	chr10	431960	287	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	146	2	4.66424	5.363860000000001	6.06348	0.0108257	4.69202e-4	0.0707085	0.00833075
chr11	107330519	107330618	5115813	0	-	0.40404	(0.39,0.419]	chr11	496792	1	INTRON	INTRON	CWF19L2	ENSG00000152404.16	ENST00000282251.10:ENST00000431778.5:ENST00000532251.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	65	2	4.99538	5.363659999999999	5.73194	0.0613573	0.00276973	0.158506	0.0286873
chr10	74240642	74240741	4512580	0	+	0.353535	(0.33,0.36]	chr10	431925	157	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	73	2	4.49572	5.36345	6.23118	0.103264	6.87319e-4	0.197541	0.0109073
chr16	85375542	85375642	6516826	0	+	0.6	(0.58,1]	chr16	646391	162	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	4.74346	5.36334	5.98322	0.0121457	0.00562007	0.0754623	0.0493906
chr22	45290622	45290720	7738855	0	+	0.612245	(0.58,1]	chr22	811371	11	INTRON	INTRON	UPK3A	ENSG00000100373.10	ENST00000216211.9:ENST00000396082.2	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	4.74346	5.36334	5.98322	0.0121457	0.00562007	0.0754623	0.0493906
chr8	433135	433235	3743662	0	+	0.39	(0.36,0.39]	chr8	359996	2	SS5_PROX	SS5_PROX:INTRON	FBXO25	ENSG00000147364.17	ENST00000518240.5:ENST00000352684.2:ENST00000382824.5:ENST00000350302.8:ENST00000276326.9:ENST00000524125.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	144	2	4.21215	5.363160000000001	6.51417	0.00592387	0.00172878	0.0506158	0.0208639
chr12	39856189	39856288	5413133	0	-	0.454545	(0.45,0.485]	chr12	530059	206	INTRON	INTRON	SLC2A13	ENSG00000151229.13	ENST00000280871.9:ENST00000465517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	64	2	5.18438	5.36312	5.54186	0.0243502	0.00773818	0.106588	0.0568726
chr4	4725528	4725628	2008558	0	+	0.48	(0.45,0.485]	chr4	204942	147	INTRON	INTRON	STX18-AS1	ENSG00000247708.8	ENST00000664571.1:ENST00000670162.1:ENST00000653097.1:ENST00000499430.7:ENST00000655855.1	lncRNA	lncRNA	lncRNA	lncRNA	0	64	2	5.18438	5.36312	5.54186	0.0243502	0.00773818	0.106588	0.0568726
chr17	80893606	80893706	6812414	0	+	0.49	(0.485,0.523]	chr17	687927	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RPTOR	ENSG00000141564.15	ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	5.06999	5.3629999999999995	5.65601	0.0445854	0.00224147	0.140478	0.024843
chr17	65537835	65537935	6950636	0	-	0.6	(0.58,1]	chr17	709204	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AXIN2	ENSG00000168646.14	ENST00000307078.10:ENST00000618960.4:ENST00000375702.5	protein_coding	protein_coding	protein_coding	protein_coding	4	284	2	2.93394	5.3629500000000005	7.79196	0.0114952	1.18598e-6	0.0726275	1.16684e-4
chr16	89306840	89306939	6659880	0	-	0.666667	(0.58,1]	chr16	666665	11	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1:ENST00000647539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	152	2	3.75278	5.36295	6.97312	0.01024	2.07776e-5	0.0684871	8.62032e-4
chr13	113029037	113029136	5655919	0	+	0.414141	(0.39,0.419]	chr13	555157	21	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486806.1:ENST00000473345.5	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.16048	5.36283	5.56518	0.027797	0.00999413	0.112962	0.0667545
chr9	27478818	27478918	4289557	0	-	0.44	(0.419,0.45]	chr9	409772	227	INTRON	INTRON	MOB3B	ENSG00000120162.10	ENST00000262244.6	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	5.09718	5.362615	5.62805	0.0280406	0.012235	0.113651	0.0757339
chr20	36856083	36856183	7557062	0	-	0.58	(0.523,0.58]	chr20	789155	163	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	1	138	2	4.11732	5.36259	6.60786	0.00345115	0.00168626	0.037649	0.0204375
chr19	2441715	2441815	7309603	0	-	0.69	(0.58,1]	chr19	753890	28	INTRON	INTRON	LMNB2	ENSG00000176619.13	ENST00000325327.4	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.02314	5.362525	5.70191	0.00964351	0.00638322	0.0659937	0.0501889
chr7	101442885	101442985	3432792	0	+	0.49	(0.485,0.523]	chr7	332431	224	INTRON	INTRON	COL26A1	ENSG00000160963.14	ENST00000313669.12:ENST00000613501.1	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	4.78426	5.362285	5.94031	0.0660335	0.00107389	0.162385	0.0148869
chr18	48936109	48936209	7157866	0	-	0.57	(0.523,0.58]	chr18	727804	25	INTRON	INTRON	SMAD7	ENSG00000101665.10	ENST00000262158.8:ENST00000545051.2:ENST00000591805.5:ENST00000589634.1:ENST00000585986.1:ENST00000586093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	66	2	4.96714	5.36228	5.75742	0.0155135	0.0108948	0.0849828	0.0706366
chr1	228144497	228144582	358029	0	+	0.647059	(0.58,1]	chr1	40402	3	UTR5	UTR5:EXON_MRNA:INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5:ENST00000366718.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	65	2	4.89007	5.36191	5.83375	0.00872525	0.00751249	0.0612699	0.0576451
chr9	134372139	134372239	4261145	0	+	0.62	(0.58,1]	chr9	406313	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2:ENST00000356384.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	65	2	4.89007	5.36191	5.83375	0.00872525	0.00751249	0.0612699	0.0576451
chr19	33484523	33484622	7365692	0	-	0.474747	(0.45,0.485]	chr19	763440	61	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000590731.6:ENST00000609145.5:ENST00000588719.5:ENST00000651646.1:ENST00000590755.6:ENST00000590408.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	65	2	4.89685	5.3618749999999995	5.8269	0.0614781	0.00167585	0.158506	0.0203806
chr11	107530519	107530618	5117390	0	-	0.535354	(0.523,0.58]	chr11	496922	46	INTRON	INTRON	ALKBH8	ENSG00000137760.15	ENST00000428149.7:ENST00000429370.5:ENST00000389568.7:ENST00000260318.6:ENST00000417449.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	65	2	4.84569	5.361795000000001	5.8779	0.0610722	0.00121652	0.158506	0.0162693
chr1	44245653	44245752	459629	0	-	0.484848	(0.45,0.485]	chr1	55307	32	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	63	2	5.16149	5.36176	5.56203	0.0427653	0.00322991	0.13762	0.0319521
chr10	42593208	42593308	4674948	0	-	0.46	(0.45,0.485]	chr10	445874	6	CDS	CDS:EXON_MRNA:INTRON	ZNF33B	ENSG00000196693.15	ENST00000462075.1:ENST00000486187.5:ENST00000465206.5:ENST00000613419.4:ENST00000359467.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	5.16149	5.36176	5.56203	0.0427653	0.00322991	0.13762	0.0319521
chr9	137781790	137781890	4266127	0	+	0.48	(0.45,0.485]	chr9	407439	1	SS3_PROX	SS3_PROX:INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	63	2	5.16149	5.36176	5.56203	0.0427653	0.00322991	0.13762	0.0319521
chr17	642200	642299	6823598	0	-	0.454545	(0.45,0.485]	chr17	689804	90	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000680944.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000681830.1:ENST00000679959.1:ENST00000680114.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000570650.2:ENST00000679680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	69	2	4.64346	5.36168	6.0799	0.0850039	8.68466e-4	0.181766	0.0128564
chr2	235893344	235893444	1066547	0	+	0.57	(0.523,0.58]	chr2	115730	95	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	168	2	4.13888	5.361675	6.58447	0.00718012	1.68436e-4	0.056408	0.00400681
chr21	45479035	45479127	7631064	0	+	0.695652	(0.58,1]	chr21	797700	3	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	1	127	2	4.26089	5.361504999999999	6.46212	0.00211728	7.87512e-4	0.028892	0.0120243
chr10	18555468	18555568	4642283	0	-	0.43	(0.419,0.45]	chr10	443321	31	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	4.78575	5.361470000000001	5.93719	0.0224633	0.0176643	0.108193	0.0909046
chr16	29267814	29267914	6433515	0	+	0.42	(0.419,0.45]	chr16	636745	157	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	71	2	4.78575	5.361470000000001	5.93719	0.0224633	0.0176643	0.108193	0.0909046
chr12	120248415	120248515	5522141	0	-	0.47	(0.45,0.485]	chr12	543973	3	SS5_PROX	SS5_PROX:INTRON	PXN	ENSG00000089159.17	ENST00000267257.11:ENST00000228307.11:ENST00000424649.6:ENST00000637617.2:ENST00000458477.6:ENST00000323871.9:ENST00000547983.5:ENST00000551327.5:ENST00000440827.3:ENST00000547746.1:ENST00000550205.1:ENST00000547772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	145	2	3.90828	5.36147	6.81466	0.00323103	0.00274987	0.0332418	0.0319521
chr1	172600767	172600866	276265	0	+	0.434343	(0.419,0.45]	chr1	32365	2	INTRON	INTRON	SUCO	ENSG00000094975.14	ENST00000367723.8:ENST00000608151.5:ENST00000616058.4:ENST00000263688.4:ENST00000610051.5	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.27868	5.361375	5.44407	0.0457732	0.00585948	0.142336	0.0474117
chr16	85398532	85398632	6517056	0	+	0.52	(0.485,0.523]	chr16	646391	392	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	4.43249	5.361275	6.29006	0.0322299	0.00613935	0.12988	0.0517628
chr19	36838165	36838236	7371535	0	-	0.647887	(0.58,1]	chr19	764193	2	SS5_PROX	SS5_PROX:INTRON	ZNF790	ENSG00000197863.9	ENST00000356725.9:ENST00000613249.4:ENST00000614179.4:ENST00000528994.5:ENST00000586323.5	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.00585	5.361065	5.71628	0.0323732	0.00104668	0.121593	0.0146403
chr16	85522979	85523079	6518301	0	+	0.46	(0.45,0.485]	chr16	646391	1637	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	183	2	4.45165	5.360765	6.26988	0.0044016	5.20615e-4	0.0430115	0.00899129
chr10	132554657	132554757	4617007	0	+	0.51	(0.485,0.523]	chr10	441139	161	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	4.96361	5.360725	5.75784	0.0154142	0.0112713	0.0849828	0.071709
chr11	35343758	35343858	5027490	0	-	0.46	(0.45,0.485]	chr11	486253	201	INTRON	INTRON	SLC1A2	ENSG00000110436.13	ENST00000278379.9:ENST00000395750.6:ENST00000395753.6:ENST00000642171.1:ENST00000644459.1:ENST00000643522.1:ENST00000645303.1:ENST00000644050.1:ENST00000644779.1:ENST00000645634.1:ENST00000643000.1:ENST00000644299.1:ENST00000645194.1:ENST00000642448.1:ENST00000646080.1:ENST00000644868.1:ENST00000647104.1:ENST00000643134.1:ENST00000531628.2:ENST00000643454.1:ENST00000643305.1:ENST00000646099.1:ENST00000647372.1:ENST00000642578.1:ENST00000606205.6:ENST00000644351.1:ENST00000449068.2:ENST00000642224.1:ENST00000642183.1:ENST00000645892.1:ENST00000646585.1:ENST00000646847.1:ENST00000643154.1:ENST00000646112.1:ENST00000642392.1:ENST00000645966.1:ENST00000643401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	65	2	5.0722	5.360709999999999	5.64922	0.020599	0.00988295	0.0982852	0.0664239
chr14	94307589	94307686	6046248	0	-	0.453608	(0.45,0.485]	chr14	593049	10	INTRON	INTRON	SERPINA6	ENSG00000170099.6	ENST00000341584.4:ENST00000555056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	65	2	5.0722	5.360709999999999	5.64922	0.020599	0.00988295	0.0982852	0.0664239
chr8	23142651	23142751	3955082	0	-	0.31	(0.29,0.33]	chr8	377528	40	INTRON	INTRON	TNFRSF10D	ENSG00000173530.6	ENST00000312584.4	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	4.89341	5.36054	5.82767	0.0135896	0.0124924	0.0811697	0.0761905
chr10	18564862	18564962	4642377	0	-	0.35	(0.33,0.36]	chr10	443321	125	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	173	2	4.12577	5.3605	6.59523	0.0081886	2.55497e-4	0.0607268	0.00541562
chr17	14397372	14397472	6683510	0	+	0.39	(0.36,0.39]	chr17	670767	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000230647	ENSG00000230647.2	ENST00000436469.1:ENST00000655690.1	lncRNA	lncRNA	lncRNA	lncRNA	1	144	2	4.16956	5.3604	6.55124	0.0055566	0.00192895	0.049265	0.0224816
chr15	67102522	67102622	6139443	0	+	0.49	(0.485,0.523]	chr15	603944	31	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1:ENST00000559092.1:ENST00000560175.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	166	2	4.02059	5.36027	6.69995	0.0088843599999999991	1.26446e-4	0.0635397	0.00325863
chr2	239159447	239159546	1390291	0	-	0.616162	(0.58,1]	chr2	148698	23	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	61	2	5.20223	5.36018	5.51813	0.013519	0.00411607	0.0792526	0.0374453
chr13	40741860	40741960	5693464	0	-	0.39	(0.36,0.39]	chr13	558768	119	INTRON	INTRON	MRPS31	ENSG00000102738.8	ENST00000323563.8:ENST00000498078.1:ENST00000461675.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	5.04893	5.360105000000001	5.67128	0.023302	0.0125348	0.103669	0.0765738
chr17	80024001	80024101	6982156	0	-	0.68	(0.58,1]	chr17	713081	100	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.26138	5.360049999999999	5.45872	0.021217	0.00211999	0.0996078	0.0239744
chr12	112426711	112426811	5331552	0	+	0.37	(0.36,0.39]	chr12	520142	72	INTRON	INTRON	PTPN11	ENSG00000179295.19	ENST00000688597.1:ENST00000692624.1:ENST00000685487.1:ENST00000690210.1:ENST00000639857.2:ENST00000392597.5:ENST00000687906.1:ENST00000351677.7:ENST00000635625.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	64	2	5.1004	5.359845	5.61929	0.0526991	0.00359045	0.14912	0.0342681
chr4	8393633	8393730	2188533	0	-	0.505155	(0.485,0.523]	chr4	222086	8	INTRON	INTRON	ACOX3	ENSG00000087008.16	ENST00000356406.10:ENST00000413009.6:ENST00000503233.5:ENST00000510365.5:ENST00000508302.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	67	2	4.8987	5.359755	5.82081	0.0138807	0.0129327	0.0804838	0.0778105
chr9	121194116	121194215	4389693	0	-	0.50505	(0.485,0.523]	chr9	419042	3	INTRON	INTRON	RAB14	ENSG00000119396.11	ENST00000373840.9:ENST00000451303.1	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	4.8987	5.359755	5.82081	0.0138807	0.0129327	0.0804838	0.0778105
chr10	112195047	112195147	4760737	0	-	0.52	(0.485,0.523]	chr10	455255	114	INTRON	INTRON	GPAM	ENSG00000119927.14	ENST00000480130.5:ENST00000498541.1	protein_coding	processed_transcript	protein_coding	processed_transcript	6	315	2	3.55526	5.35975	7.16424	0.0011719	5.1987e-4	0.0206836	0.00899129
chr19	12436757	12436856	7335372	0	-	0.30303	(0.29,0.33]	chr19	758930	32	INTRON	INTRON	ENSG00000268870:ZNF443	ENSG00000268870.1:ENSG00000180855.16	ENST00000595562.1:ENST00000301547.10:ENST00000436821.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	65	2	5.02042	5.359629999999999	5.69884	0.0155382	0.0103902	0.0849828	0.0682598
chr2	108637038	108637137	871986	0	+	0.30303	(0.29,0.33]	chr2	98320	152	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1:ENST00000695519.1:ENST00000332345.10:ENST00000695520.1:ENST00000393310.5:ENST00000695521.1:ENST00000410093.5:ENST00000449684.6:ENST00000409441.5:ENST00000422797.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	65	2	5.02042	5.359629999999999	5.69884	0.0155382	0.0103902	0.0849828	0.0682598
chr5	55402776	55402873	2422552	0	+	0.319588	(0.29,0.33]	chr5	241608	20	INTRON	INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	65	2	5.02042	5.359629999999999	5.69884	0.0155382	0.0103902	0.0849828	0.0682598
chr21	43605267	43605367	7677123	0	-	0.54	(0.523,0.58]	chr21	802562	126	INTRON	INTRON	HSF2BP	ENSG00000160207.9	ENST00000291560.7	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	4.65157	5.35952	6.06747	0.0787008	7.30845e-4	0.175203	0.0113963
chr16	89292796	89292896	6659733	0	-	0.64	(0.58,1]	chr16	666648	6	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	261	2	2.75154	5.359455	7.96737	0.0209585	6.28564e-7	0.0995329	7.75874e-5
chr16	16183523	16183616	6556706	0	-	0.580645	(0.58,1]	chr16	653132	2	INTRON	INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	5.21377	5.35937	5.50497	0.0230012	0.00187297	0.102982	0.0219434
chr3	78979816	78979916	1837304	0	-	0.39	(0.36,0.39]	chr3	188611	405	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.26508	5.3593399999999995	5.4536	0.0321864	0.00795848	0.121593	0.0578938
chr6	21138148	21138248	2869986	0	+	0.38	(0.36,0.39]	chr6	279764	293	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.26508	5.3593399999999995	5.4536	0.0321864	0.00795848	0.121593	0.0578938
chr13	113332471	113332571	5753255	0	-	0.56	(0.523,0.58]	chr13	564094	60	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	2	361	2	5.17577	5.359215	5.54266	9.51348e-4	2.40322e-5	0.0184489	9.60063e-4
chr3	13198726	13198826	1691129	0	-	0.59	(0.58,1]	chr3	176566	342	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.30747	5.359205	5.41094	0.0196049	0.00240622	0.0955413	0.0261006
chr4	77811676	77811776	2255998	0	-	0.36	(0.33,0.36]	chr4	227828	349	INTRON	INTRON	CNOT6L	ENSG00000138767.14	ENST00000504123.7:ENST00000649644.1:ENST00000515506.6:ENST00000512485.6:ENST00000504804.7:ENST00000506166.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	172	2	4.08306	5.35898	6.6349	0.008837	2.28734e-4	0.0633281	0.0049799
chr5	60117685	60117785	2675321	0	-	0.4	(0.39,0.419]	chr5	264383	1286	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000502484.6:ENST00000509368.6:ENST00000509355.5:ENST00000506024.5:ENST00000506510.6:ENST00000511382.1:ENST00000505507.6:ENST00000514552.5:ENST00000515835.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	64	2	5.09906	5.35889	5.61872	0.0535378	0.00361685	0.150319	0.0342681
chr10	34684664	34684764	4670503	0	-	0.4	(0.39,0.419]	chr10	445537	51	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	4	650	2	5.32681	5.3588249999999995	5.39084	0.00102584	7.89026e-6	0.0192489	4.34116e-4
chr6	20837884	20837984	2866979	0	+	0.45	(0.419,0.45]	chr6	279734	563	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.18804	5.358815	5.52959	0.051668	0.00484244	0.148503	0.0418176
chr9	94996419	94996519	4189957	0	+	0.44	(0.419,0.45]	chr9	398123	166	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000297979.9:ENST00000424143.5:ENST00000462125.5:ENST00000479161.5:ENST00000451893.5:ENST00000460573.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	5.18804	5.358815	5.52959	0.051668	0.00484244	0.148503	0.0418176
chr2	232072809	232072909	1052183	0	+	0.51	(0.485,0.523]	chr2	114547	424	INTRON	INTRON	DIS3L2	ENSG00000144535.20	ENST00000273009.10:ENST00000390005.9:ENST00000409401.7:ENST00000445090.5:ENST00000441279.5:ENST00000325385.12:ENST00000433430.5:ENST00000464554.5:ENST00000470087.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	137	2	4.20112	5.358645	6.51617	0.00406194	0.00137422	0.0413652	0.0177822
chr7	76409313	76409413	3609984	0	-	0.48	(0.45,0.485]	chr7	348682	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SSC4D	ENSG00000146700.9	ENST00000275560.4	protein_coding	protein_coding	protein_coding	protein_coding	1	139	2	4.39187	5.358499999999999	6.32513	0.00666704	8.95692e-4	0.0540577	0.0131712
chr12	125109935	125110034	5349397	0	+	0.393939	(0.39,0.419]	chr12	523161	23	INTRON	INTRON	AACS	ENSG00000081760.17	ENST00000316519.11:ENST00000441247.6:ENST00000316543.14	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	64	2	5.26451	5.358375	5.45224	0.032783	0.00800901	0.122593	0.0580954
chr21	45444632	45444732	7630709	0	+	0.61	(0.58,1]	chr21	797656	388	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.08534	5.35826	5.63118	0.0109983	0.00549379	0.0708586	0.0454065
chr17	72676048	72676148	6965039	0	-	0.36	(0.33,0.36]	chr17	710473	120	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000579988.1:ENST00000582769.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	5.29754	5.358169999999999	5.4188	0.0360263	0.00513015	0.127853	0.0435186
chr2	101803133	101803233	861690	0	+	0.35	(0.33,0.36]	chr2	97540	31	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5:ENST00000627726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	5.29754	5.358169999999999	5.4188	0.0360263	0.00513015	0.127853	0.0435186
chr22	42987332	42987432	7824006	0	-	0.58	(0.523,0.58]	chr22	820626	276	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	165	2	3.8163299999999998	5.357785	6.89924	0.012872	6.56505e-5	0.0772995	0.00199995
chr14	61075730	61075829	5836653	0	+	0.474747	(0.45,0.485]	chr14	570881	14	INTRON	INTRON	SLC38A6	ENSG00000139974.16	ENST00000354886.6:ENST00000525723.6:ENST00000491344.7:ENST00000451406.5:ENST00000529345.6:ENST00000526539.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	63	2	5.1123	5.35764	5.60298	0.0458344	0.00292492	0.142336	0.029882
chr3	129395716	129395816	1911575	0	-	0.48	(0.45,0.485]	chr3	194159	1	SS5_PROX	SS5_PROX:INTRON	RPL32P3	ENSG00000251474.7	ENST00000510078.5:ENST00000507287.5:ENST00000687239.1:ENST00000514355.5:ENST00000507238.5:ENST00000515866.5:ENST00000499631.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	63	2	5.1123	5.35764	5.60298	0.0458344	0.00292492	0.142336	0.029882
chr12	2835153	2835252	5156745	0	+	0.535354	(0.523,0.58]	chr12	501120	39	INTRON	INTRON	ITFG2	ENSG00000111203.13	ENST00000644123.1:ENST00000644517.1:ENST00000645513.1:ENST00000643039.1:ENST00000552005.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	136	2	4.2576599999999996	5.35758	6.4575	0.0045605	0.00114788	0.0438198	0.0156784
chr13	98538996	98539096	5747911	0	-	0.55	(0.523,0.58]	chr13	563357	171	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	136	2	4.2576599999999996	5.35758	6.4575	0.0045605	0.00114788	0.0438198	0.0156784
chr14	63486148	63486248	5992400	0	-	0.44	(0.419,0.45]	chr14	587804	319	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	150	2	4.64385	5.356935	6.07002	0.0143746	5.96394e-4	0.0821732	0.00990739
chr12	132537945	132538044	5352995	0	+	0.676768	(0.58,1]	chr12	523670	96	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.35214	5.356835	5.36153	0.0181452	0.00273899	0.0921579	0.028553
chr13	28139287	28139387	5555509	0	+	0.71	(0.58,1]	chr13	548207	2	SS5_PROX	SS5_PROX:INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	60	2	5.35214	5.356835	5.36153	0.0181452	0.00273899	0.0921579	0.028553
chr16	57373432	57373531	6465998	0	+	0.636364	(0.58,1]	chr16	641365	4	INTRON	INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.35214	5.356835	5.36153	0.0181452	0.00273899	0.0921579	0.028553
chr22	21676113	21676213	7690785	0	+	0.63	(0.58,1]	chr22	804829	6	INTRON	INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000458567.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000679586.1:ENST00000680094.1:ENST00000484439.5:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000680022.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	60	2	5.35214	5.356835	5.36153	0.0181452	0.00273899	0.0921579	0.028553
chr7	1064093	1064192	3526868	0	-	0.545455	(0.523,0.58]	chr7	340585	89	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	5.20104	5.356755	5.51247	0.0230387	0.00648051	0.102982	0.0503748
chr5	123526746	123526846	2523620	0	+	0.34	(0.33,0.36]	chr5	250487	138	INTRON	INTRON	CSNK1G3	ENSG00000151292.18	ENST00000345990.9:ENST00000508708.1:ENST00000512718.7:ENST00000511130.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	5.34082	5.35672	5.37262	0.0338211	0.00569729	0.124319	0.046716
chr10	103700311	103700410	4757103	0	-	0.525253	(0.523,0.58]	chr10	454791	68	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	137	2	4.14168	5.356695	6.57171	0.00369199	0.00157839	0.0389784	0.0195793
chr18	62267528	62267622	7078249	0	+	0.329787	(0.29,0.33]	chr18	721714	4	INTRON	INTRON	RELCH	ENSG00000134444.15	ENST00000644646.2:ENST00000256858.10:ENST00000398130.6:ENST00000587725.5:ENST00000588446.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	0	63	2	5.02395	5.356675	5.6894	0.0445554	0.00217863	0.140478	0.0243976
chr20	63733968	63734064	7509380	0	+	0.625	(0.58,1]	chr20	783523	3	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1:ENST00000632538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	127	2	4.59428	5.356465	6.11865	0.00429384	2.81862e-4	0.042386	0.00579621
chr6	24207200	24207300	3108814	0	-	0.44	(0.419,0.45]	chr6	301412	17	INTRON	INTRON	DCDC2	ENSG00000146038.12	ENST00000378454.8	protein_coding	protein_coding	protein_coding	protein_coding	1	167	2	3.4957	5.35612	7.21654	0.0102234	0.00208302	0.0678072	0.0287557
chr13	49012788	49012888	5589795	0	+	0.32	(0.29,0.33]	chr13	551097	61	INTRON	INTRON	FNDC3A	ENSG00000102531.16	ENST00000492622.6:ENST00000378383.5:ENST00000541916.5:ENST00000484074.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	63	2	5.19216	5.35594	5.51972	0.0208628	0.00712176	0.0991037	0.0541241
chr14	89203336	89203435	6026128	0	-	0.525253	(0.523,0.58]	chr14	591423	125	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000555010.1:ENST00000557718.5:ENST00000553353.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	62	2	5.26332	5.355885000000001	5.44845	0.0337698	0.00361636	0.124319	0.0342681
chr14	104890158	104890258	5926127	0	+	0.57	(0.523,0.58]	chr14	579998	4	SS5_PROX	SS5_PROX:INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.26332	5.355885000000001	5.44845	0.0337698	0.00361636	0.124319	0.0342681
chr16	1528477	1528575	6533133	0	-	0.540816	(0.523,0.58]	chr16	649069	13	INTRON	INTRON	IFT140	ENSG00000187535.14	ENST00000426508.7:ENST00000361339.9:ENST00000397417.6:ENST00000565298.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	62	2	5.26332	5.355885000000001	5.44845	0.0337698	0.00361636	0.124319	0.0342681
chr16	85591428	85591528	6518987	0	+	0.55	(0.523,0.58]	chr16	646396	347	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.26332	5.355885000000001	5.44845	0.0337698	0.00361636	0.124319	0.0342681
chr11	70685507	70685607	5061134	0	-	0.59	(0.58,1]	chr11	492688	155	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	210	2	3.30999	5.3558699999999995	7.40175	0.00180937	2.64397e-4	0.02155	0.00920003
chr10	127428402	127428501	4612232	0	+	0.575758	(0.523,0.58]	chr10	440909	20	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2	protein_coding	protein_coding	protein_coding	protein_coding	1	141	2	4.74483	5.355785	5.96674	0.0109075	2.83162e-4	0.0707085	0.00581439
chr12	113951526	113951623	5510402	0	-	0.474227	(0.45,0.485]	chr12	542546	10	INTRON	INTRON	RBM19	ENSG00000122965.11	ENST00000545145.6:ENST00000392561.7:ENST00000261741.10	protein_coding	protein_coding	protein_coding	protein_coding	1	140	2	4.11205	5.35578	6.59951	0.00408353	0.00190576	0.0413652	0.0222917
chr16	81672370	81672470	6510033	0	+	0.48	(0.45,0.485]	chr16	645972	3	SS5_PROX	SS5_PROX:INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	1	140	2	4.11205	5.35578	6.59951	0.00408353	0.00190576	0.0413652	0.0222917
chr10	103687739	103687839	4756973	0	-	0.53	(0.523,0.58]	chr10	454779	97	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	5.08882	5.355700000000001	5.62258	0.0193313	0.00834774	0.0954446	0.0598672
chr6	31734563	31734663	3119431	0	-	0.55	(0.523,0.58]	chr6	303331	3	SS3_PROX	SS3_PROX:INTRON	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000616760.1:ENST00000375784.8	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.08882	5.355700000000001	5.62258	0.0193313	0.00834774	0.0954446	0.0598672
chr12	113941532	113941629	5510295	0	-	0.42268	(0.419,0.45]	chr12	542512	10	INTRON	INTRON	RBM19	ENSG00000122965.11	ENST00000545145.6:ENST00000392561.7:ENST00000261741.10	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	4.81671	5.355575	5.89444	0.08258	0.00206691	0.179396	0.0235758
chr18	80177961	80178061	7183058	0	-	0.45	(0.419,0.45]	chr18	730359	170	INTRON	INTRON	PARD6G	ENSG00000178184.16	ENST00000353265.8	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.1405	5.355505	5.57051	0.0550015	0.00441471	0.153337	0.0393688
chr3	167748729	167748829	1622719	0	+	0.42	(0.419,0.45]	chr3	170036	122	INTRON	INTRON	SERPINI1	ENSG00000163536.13	ENST00000472941.5:ENST00000446050.7:ENST00000295777.9:ENST00000472747.2	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.1405	5.355505	5.57051	0.0550015	0.00441471	0.153337	0.0393688
chrX	44924484	44924584	7872186	0	+	0.44	(0.419,0.45]	chrX	825082	501	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	64	2	5.1405	5.355505	5.57051	0.0550015	0.00441471	0.153337	0.0393688
chr17	7112141	7112239	6847755	0	-	0.316327	(0.29,0.33]	chr17	693423	29	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	184	2	4.04313	5.355454999999999	6.66778	0.00269181	6.3144e-4	0.0329086	0.0102754
chr10	15263568	15263668	4637353	0	-	0.5	(0.485,0.523]	chr10	443067	83	INTRON	INTRON	FAM171A1	ENSG00000148468.17	ENST00000378116.9:ENST00000455654.1	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	4.90542	5.355285	5.80515	0.0561086	0.00153111	0.154188	0.0191213
chr8	130276841	130276941	4081962	0	-	0.49	(0.485,0.523]	chr8	388157	299	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000521075.5:ENST00000524367.5:ENST00000520927.5:ENST00000524299.1:ENST00000521426.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	64	2	4.90542	5.355285	5.80515	0.0561086	0.00153111	0.154188	0.0191213
chr1	111724616	111724714	561644	0	-	0.5	(0.485,0.523]	chr1	64439	16	UTR3	UTR3:EXON_MRNA:INTRON	INKA2	ENSG00000197852.12	ENST00000527570.1:ENST00000357260.6:ENST00000534365.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	5.19749	5.355195	5.5129	0.0229047	0.00672953	0.102982	0.0519464
chr14	70025045	70025145	5872633	0	+	0.51	(0.485,0.523]	chr14	573363	12	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.19749	5.355195	5.5129	0.0229047	0.00672953	0.102982	0.0519464
chr1	91730765	91730862	526255	0	-	0.371134	(0.36,0.39]	chr1	61878	4	INTRON	INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000468996.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	65	2	4.94194	5.355145	5.76835	0.064883	0.00252253	0.162218	0.0270357
chr13	112744258	112744358	5653084	0	+	0.55	(0.523,0.58]	chr13	554906	267	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000466946.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	5.30795	5.3551	5.40225	0.0315825	0.00404292	0.120781	0.0371291
chr16	85592527	85592626	6518998	0	+	0.555556	(0.523,0.58]	chr16	646396	358	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.30795	5.3551	5.40225	0.0315825	0.00404292	0.120781	0.0371291
chr4	870310	870410	2178296	0	-	0.57	(0.523,0.58]	chr4	220582	2	SS5_PROX	SS5_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	5.30795	5.3551	5.40225	0.0315825	0.00404292	0.120781	0.0371291
chr18	74514690	74514784	7088610	0	+	0.446809	(0.419,0.45]	chr18	722320	6	INTRON	INTRON	CNDP2	ENSG00000133313.15	ENST00000579847.5:ENST00000324262.9:ENST00000324301.12:ENST00000584581.5:ENST00000579624.1:ENST00000583695.1:ENST00000581600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	145	2	4.26269	5.355085	6.44748	0.00782663	0.0016249	0.0592048	0.0200276
chr10	100970895	100970990	4569831	0	+	0.463158	(0.45,0.485]	chr10	436226	6	INTRON	INTRON	SEMA4G	ENSG00000095539.15	ENST00000519649.5:ENST00000521006.5:ENST00000518124.5:ENST00000518244.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	64	2	4.9538	5.354925	5.75605	0.0569772	0.002004	0.154343	0.0230381
chr3	138757475	138757575	1927619	0	-	0.37	(0.36,0.39]	chr3	195943	11	INTRON	INTRON	PIK3CB	ENSG00000051382.9	ENST00000674063.1:ENST00000289153.6:ENST00000477593.5:ENST00000462898.5:ENST00000483968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	81	2	4.39677	5.354895	6.31302	0.0422707	0.00834137	0.149195	0.0613342
chrX	24801792	24801892	7856980	0	+	0.44	(0.419,0.45]	chrX	824101	69	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	65	2	5.15214	5.354765	5.55739	0.0310506	0.0109324	0.119758	0.0706366
chr1	248855179	248855279	709846	0	-	0.44	(0.419,0.45]	chr1	83014	4	SS5_PROX	SS5_PROX:INTRON	ZNF692	ENSG00000171163.16	ENST00000463519.5:ENST00000306601.9:ENST00000366471.7:ENST00000533927.5:ENST00000476503.5:ENST00000477070.6:ENST00000412341.6:ENST00000482023.5:ENST00000451251.5:ENST00000470787.6:ENST00000474351.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	148	2	3.97869	5.35455	6.73041	0.00486702	0.00330911	0.0456282	0.0324356
chr4	73247486	73247586	2249885	0	-	0.31	(0.29,0.33]	chr4	226951	245	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	3	222	2	3.83331	5.354545	6.87578	0.00179434	5.97364e-4	0.0262815	0.00992038
chr10	132238734	132238834	4781995	0	-	0.44	(0.419,0.45]	chr10	457361	102	INTRON	INTRON	STK32C	ENSG00000165752.17	ENST00000298630.8:ENST00000368622.5:ENST00000462160.5:ENST00000368620.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	67	2	4.98054	5.354240000000001	5.72794	0.0242188	0.0154548	0.106588	0.0869771
chr3	114530146	114530246	1877096	0	-	0.41	(0.39,0.419]	chr3	190867	269	INTRON	INTRON	ZBTB20	ENSG00000181722.17	ENST00000675478.1:ENST00000357258.8:ENST00000462705.5:ENST00000393785.6:ENST00000471418.5:ENST00000481632.5:ENST00000464560.5:ENST00000676079.1:ENST00000479879.5:ENST00000463890.5:ENST00000491500.5:ENST00000480832.5:ENST00000492665.5:ENST00000470556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	65	2	4.9406	5.35419	5.76778	0.0658437	0.0025422	0.162385	0.0271978
chr3	58334822	58334922	1485566	0	+	0.29	[0,0.29]	chr3	159950	8	INTRON	INTRON	PXK	ENSG00000168297.16	ENST00000302779.9:ENST00000468776.5:ENST00000383716.7:ENST00000356151.7:ENST00000463280.5:ENST00000383715.8:ENST00000484288.5:ENST00000479241.5:ENST00000477308.5:ENST00000491164.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	155	2	4.17108	5.35417	6.53726	0.00466653	1.53535e-4	0.0445791	0.00374573
chr16	8772279	8772379	6382136	0	+	0.42	(0.419,0.45]	chr16	631242	1	SS3_PROX	SS3_PROX:INTRON	ABAT	ENSG00000183044.12	ENST00000268251.13:ENST00000396600.6:ENST00000566590.5:ENST00000567812.5:ENST00000425191.6:ENST00000569156.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	69	2	4.69033	5.35414	6.01795	0.0958674	0.00152916	0.189038	0.0191213
chr4	186283691	186283791	2173834	0	+	0.51	(0.485,0.523]	chr4	220289	2	SS3_PROX	SS3_PROX:INTRON	F11	ENSG00000088926.14	ENST00000403665.7:ENST00000264692.8	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.08528	5.35414	5.623	0.0192139	0.0086528	0.095424900000000007	0.0612699
chr22	45291504	45291602	7738864	0	+	0.479592	(0.45,0.485]	chr22	811371	20	INTRON	INTRON	UPK3A	ENSG00000100373.10	ENST00000216211.9:ENST00000396082.2	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.12938	5.353960000000001	5.57854	0.0230065	0.00873194	0.102982	0.0612699
chr16	78481749	78481849	6499229	0	+	0.44	(0.419,0.45]	chr16	645683	486	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000684632.1:ENST00000627394.3:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6:ENST00000408984.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	211	2	4.42581	5.35393	6.28205	0.0102557	3.10774e-4	0.0684871	0.00624322
chr10	21852051	21852151	4644351	0	-	0.31	(0.29,0.33]	chr10	443426	456	INTRON	INTRON	DNAJC1	ENSG00000136770.11	ENST00000376980.8:ENST00000483085.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	71	2	4.67908	5.353875	6.02867	0.0209202	0.00880071	0.102931	0.0630883
chr3	182976493	182976592	1964442	0	-	0.414141	(0.39,0.419]	chr3	199617	104	INTRON	INTRON	DCUN1D1	ENSG00000043093.15	ENST00000292782.9:ENST00000632685.1:ENST00000460412.6:ENST00000469954.5:ENST00000492563.1:ENST00000497606.5:ENST00000487822.5:ENST00000466812.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	143	2	4.2918	5.353765	6.41573	0.00718148	0.00141198	0.056408	0.0180814
chr6	16517237	16517337	3102009	0	-	0.38	(0.36,0.39]	chr6	300855	308	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	5.04949	5.353755	5.65802	0.0563927	0.003279	0.154188	0.0322062
chr22	24092442	24092542	7695283	0	+	0.47	(0.45,0.485]	chr22	805504	2	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6	protein_coding	protein_coding	protein_coding	protein_coding	2	193	2	4.2982	5.353595	6.40899	0.00574958	3.22079e-4	0.0499659	0.00637349
chr5	54221812	54221912	2657511	0	-	0.51	(0.485,0.523]	chr5	263534	495	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	62	2	5.30837	5.35353	5.39869	0.0314138	0.00421243	0.12069	0.0380601
chr6	13708742	13708841	3098064	0	-	0.494949	(0.485,0.523]	chr6	300679	115	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.30837	5.35353	5.39869	0.0314138	0.00421243	0.12069	0.0380601
chr1	48227954	48228053	120979	0	+	0.616162	(0.58,1]	chr1	15165	28	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	60	2	5.11355	5.353395	5.59324	0.0271806	0.0014734	0.112113	0.0185589
chr9	129340949	129341049	4250347	0	+	0.67	(0.58,1]	chr9	404663	2	SS3_PROX	SS3_PROX:INTRON	LINC01503	ENSG00000233901.7	ENST00000427109.2:ENST00000654735.1:ENST00000654190.1:ENST00000657886.1:ENST00000661745.1:ENST00000436710.6:ENST00000660635.1:ENST00000657651.1:ENST00000665063.2:ENST00000667257.1:ENST00000690929.1:ENST00000654148.1:ENST00000444125.3:ENST00000666671.1:ENST00000660036.1:ENST00000657393.1:ENST00000659864.1	lncRNA	lncRNA	lncRNA	lncRNA	0	60	2	5.11355	5.353395	5.59324	0.0271806	0.0014734	0.112113	0.0185589
chr6	99413331	99413423	3208654	0	-	0.347826	(0.33,0.36]	chr6	311556	2	INTRON	INTRON	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5:ENST00000478777.5:ENST00000492294.5:ENST00000498075.1:ENST00000466057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	189	2	3.94094	5.35325	6.76556	0.00314493	9.95951e-4	0.0358293	0.0141847
chrX	108596897	108596997	7932473	0	+	0.39	(0.36,0.39]	chrX	830165	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	COL4A5	ENSG00000188153.14	ENST00000328300.11:ENST00000361603.7:ENST00000483338.1	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.214	5.3531200000000005	5.49224	0.0304242	0.00887999	0.11845	0.0618231
chr1	248854979	248855079	709844	0	-	0.54	(0.523,0.58]	chr1	83014	2	SS5_PROX	SS5_PROX:INTRON	ZNF692	ENSG00000171163.16	ENST00000463519.5:ENST00000306601.9:ENST00000366471.7:ENST00000533927.5:ENST00000476503.5:ENST00000477070.6:ENST00000412341.6:ENST00000482023.5:ENST00000451251.5:ENST00000470787.6:ENST00000474351.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	165	2	4.00257	5.353065000000001	6.70356	0.0092178	1.18392e-4	0.0644666	0.00311099
chr6	41701073	41701172	3132403	0	-	0.535354	(0.523,0.58]	chr6	305477	95	INTRON	INTRON	TFEB	ENSG00000112561.19	ENST00000358871.6:ENST00000373033.6:ENST00000230323.8:ENST00000677531.1:ENST00000403298.9:ENST00000420312.6:ENST00000424495.2:ENST00000678831.1:ENST00000419396.6:ENST00000416140.6:ENST00000419574.6:ENST00000445214.2:ENST00000678871.1:ENST00000394283.5:ENST00000679237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	69	2	4.58058	5.35304	6.1255	0.0860403	6.23263e-4	0.181766	0.0101764
chr3	13023295	13023395	1689369	0	-	0.7	(0.58,1]	chr3	176542	8	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.31036	5.35291	5.39546	0.0168207	0.00312721	0.0884836	0.0311915
chr10	101632197	101632297	4749127	0	-	0.54	(0.523,0.58]	chr10	453957	54	INTRON	INTRON	FBXW4	ENSG00000107829.15	ENST00000331272.9:ENST00000664783.1:ENST00000457105.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	5.35124	5.35288	5.35452	0.0295772	0.00453096	0.116079	0.0400651
chr1	2241825	2241925	4629	0	+	0.57	(0.523,0.58]	chr1	1048	88	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	185	2	4.20906	5.3528199999999995	6.49658	0.00424382	3.59902e-4	0.0422099	0.00693803
chr10	75498493	75498593	4521143	0	+	0.49	(0.485,0.523]	chr10	432249	469	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	4	252	2	3.62893	5.352785	7.07664	0.00139256	6.87574e-4	0.022808	0.0109099
chr20	8741263	8741363	7432710	0	+	0.45	(0.419,0.45]	chr20	773837	4	SS3_PROX	SS3_PROX:INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000378641.7:ENST00000338037.11:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000626966.2:ENST00000617005.4:ENST00000612075.4:ENST00000487210.5:ENST00000494924.2:ENST00000439627.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	69	2	4.85365	5.352425	5.8512	0.0201381	0.0197641	0.100774	0.0973365
chr16	78989811	78989911	6504317	0	+	0.53	(0.523,0.58]	chr16	645717	2095	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	229	2	3.12791	5.35242	7.57693	0.0203969	7.82132e-6	0.0979776	4.32234e-4
chr1	3471416	3471511	5823	0	+	0.631579	(0.58,1]	chr1	1229	15	INTRON	INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5	protein_coding	protein_coding	protein_coding	protein_coding	2	185	2	3.33506	5.35229	7.36952	0.00321851	2.84773e-4	0.0319521	0.00957277
chr14	89268053	89268153	6026779	0	-	0.34	(0.33,0.36]	chr14	591436	36	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	141	2	4.42536	5.352220000000001	6.27908	0.00749528	9.06044e-4	0.0576451	0.0132726
chr16	75234435	75234523	6644451	0	-	0.659091	(0.58,1]	chr16	664407	1	SS5_PROX	SS5_PROX:INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000566982.1:ENST00000563038.5:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	170	2	4.24216	5.35214	6.46212	0.00211728	2.03127e-4	0.028892	0.00457973
chr9	129494294	129494393	4250717	0	+	0.626263	(0.58,1]	chr9	404714	3	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	61	2	4.94882	5.351940000000001	5.75506	0.0354433	9.38062e-4	0.127188	0.0135546
chr14	81522233	81522333	6023449	0	-	0.45	(0.419,0.45]	chr14	591194	156	INTRON	INTRON	SEL1L	ENSG00000071537.14	ENST00000336735.9:ENST00000555824.5:ENST00000557372.1	protein_coding	protein_coding	protein_coding	protein_coding	1	146	2	4.46582	5.351685	6.23755	0.0110181	9.58499e-4	0.0708586	0.0137469
chr4	869174	869272	2178284	0	-	0.489796	(0.485,0.523]	chr4	220580	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	62	2	5.17012	5.3515999999999995	5.53308	0.038581	0.00304306	0.131324	0.0306636
chr16	89430855	89430955	6661142	0	-	0.56	(0.523,0.58]	chr16	666748	2	SS5_PROX	SS5_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	364	2	4.6757	5.351595	6.02749	0.0025819	4.96635e-6	0.0321738	3.14509e-4
chr10	103838914	103839014	4758494	0	-	0.56	(0.523,0.58]	chr10	454819	372	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	4.43597	5.351585	6.2672	0.0313935	0.00644151	0.127822	0.0530091
chr19	49660119	49660212	7397289	0	-	0.505376	(0.485,0.523]	chr19	769292	3	SS3_PROX	SS3_PROX:INTRON	IRF3	ENSG00000126456.16	ENST00000599680.1:ENST00000377135.8:ENST00000377139.8:ENST00000601291.5:ENST00000596822.5:ENST00000600911.5:ENST00000309877.11:ENST00000597198.5:ENST00000597636.5:ENST00000596644.5:ENST00000599144.5:ENST00000593922.5:ENST00000596765.5:ENST00000599223.5:ENST00000600022.5:ENST00000598808.5:ENST00000596756.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	62	2	5.35096	5.351315	5.35167	0.0294163	0.0047171	0.116079	0.0413976
chr22	46907093	46907192	7746462	0	+	0.515152	(0.485,0.523]	chr22	812218	119	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	62	2	5.35096	5.351315	5.35167	0.0294163	0.0047171	0.116079	0.0413976
chr6	107893081	107893181	3225101	0	-	0.38	(0.36,0.39]	chr6	312610	2	SS5_PROX	SS5_PROX:INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9	protein_coding	protein_coding	protein_coding	protein_coding	1	173	2	3.82738	5.35119	6.875	0.015089	1.38592e-4	0.0841543	0.00347765
chr21	44852027	44852127	7678352	0	-	0.38	(0.36,0.39]	chr21	802741	4	SS3_PROX	SS3_PROX:INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000397886.3	protein_coding	protein_coding	protein_coding	protein_coding	0	73	2	4.64834	5.350975	6.05361	0.0272056	0.0127951	0.119337	0.0769416
chr19	34227688	34227788	7241875	0	+	0.38	(0.36,0.39]	chr19	741560	4	UTR3	UTR3:EXON_MRNA	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000540746.6:ENST00000433627.9:ENST00000588582.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	1503	2	4.8247	5.350925	5.87715	9.15175e-5	1.6908e-5	0.0053051	7.44723e-4
chr19	1496997	1497073	7187816	0	+	0.605263	(0.58,1]	chr19	731383	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	REEP6	ENSG00000115255.12	ENST00000233596.8:ENST00000395479.10:ENST00000395484.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	61	2	5.14497	5.35089	5.55681	0.0126042	0.00474658	0.0761905	0.0413976
chr3	13204225	13204325	1691184	0	-	0.66	(0.58,1]	chr3	176566	397	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.14497	5.35089	5.55681	0.0126042	0.00474658	0.0761905	0.0413976
chr5	73783736	73783835	2453271	0	+	0.444444	(0.419,0.45]	chr5	244950	26	INTRON	INTRON	ARHGEF28	ENSG00000214944.10	ENST00000545377.5:ENST00000296794.10:ENST00000513042.7:ENST00000426542.6:ENST00000437974.5	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.09133	5.350820000000001	5.61031	0.0586308	0.004032	0.155565	0.0371291
chr3	48425333	48425433	1766687	0	-	0.71	(0.58,1]	chr3	182281	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	415	2	5.21542	5.350804999999999	5.48619	2.30705e-4	7.22565e-6	0.00856599	4.09005e-4
chr11	68330874	68330974	4882266	0	+	0.53	(0.523,0.58]	chr11	470542	177	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	69	2	4.7629	5.350770000000001	5.93864	0.0167014	0.0114442	0.0917029	0.0723462
chr10	18572956	18573056	4642458	0	-	0.37	(0.36,0.39]	chr10	443321	206	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	145	2	4.54767	5.350545	6.15342	0.0108737	7.11752e-4	0.0707085	0.0112082
chr1	61361761	61361860	148908	0	+	0.424242	(0.419,0.45]	chr1	17189	21	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1:ENST00000657234.1:ENST00000655770.1:ENST00000482020.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	64	2	5.25615	5.35031	5.44447	0.0364384	0.00879729	0.128173	0.0615125
chr2	175663855	175663955	959985	0	+	0.53	(0.523,0.58]	chr2	105443	689	INTRON	INTRON	ENSG00000289349	ENSG00000289349.1	ENST00000692740.1:ENST00000685522.1	lncRNA	lncRNA	lncRNA	lncRNA	3	285	2	3.6138	5.35	7.0862	0.00576393	3.69579e-5	0.0500197	0.00131447
chr1	15052608	15052708	44938	0	+	0.46	(0.45,0.485]	chr1	4408	81	INTRON	INTRON	KAZN	ENSG00000189337.17	ENST00000636203.1:ENST00000376030.7:ENST00000491547.1:ENST00000503743.5:ENST00000361144.9:ENST00000400798.6:ENST00000376028.8:ENST00000400797.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	139	2	4.48652	5.349735	6.21295	0.00810629	6.88779e-4	0.0602166	0.0109212
chr6	1680925	1681025	3079679	0	-	0.44	(0.419,0.45]	chr6	299464	6	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000533279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	573	2	4.8644	5.34969	5.83498	0.00275904	4.8613e-6	0.0332418	3.09373e-4
chr3	71319915	71320014	1828644	0	-	0.545455	(0.523,0.58]	chr3	188221	8	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000648783.1:ENST00000650156.1:ENST00000649133.1:ENST00000493010.2:ENST00000649145.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	62	2	5.1205	5.3496500000000005	5.5788	0.0416463	0.00262418	0.136301	0.0278348
chr7	47347752	47347851	3587268	0	-	0.555556	(0.523,0.58]	chr7	346030	10	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.1205	5.3496500000000005	5.5788	0.0416463	0.00262418	0.136301	0.0278348
chr4	75984923	75985023	2252979	0	-	0.39	(0.36,0.39]	chr4	227518	25	INTRON	INTRON	SDAD1	ENSG00000198301.12	ENST00000395710.5:ENST00000356260.10:ENST00000395711.8:ENST00000503411.5:ENST00000504975.1:ENST00000514710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	67	2	4.7639	5.349615	5.93533	0.0811309	0.00167855	0.177951	0.0203806
chr1	7705389	7705489	17669	0	+	0.72	(0.58,1]	chr1	1925	273	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12	protein_coding	protein_coding	protein_coding	protein_coding	1	127	2	4.15724	5.3493200000000005	6.5414	0.00179018	0.00107173	0.0262802	0.0148869
chr1	112706731	112706818	563039	0	-	0.712644	(0.58,1]	chr1	64626	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RHOC	ENSG00000155366.17	ENST00000369633.6:ENST00000369642.7:ENST00000339083.12:ENST00000285735.6:ENST00000468093.5:ENST00000369638.6:ENST00000369637.5:ENST00000369636.6:ENST00000484280.6:ENST00000369632.6:ENST00000425265.6:ENST00000436685.6:ENST00000528831.5:ENST00000484054.3:ENST00000478447.1:ENST00000527563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	67	2	4.74346	5.349	5.95454	0.0121457	0.0059453	0.0754623	0.0506158
chr10	79112121	79112221	4532476	0	+	0.56	(0.523,0.58]	chr10	432420	425	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	141	2	3.90605	5.348995	6.79194	0.00295607	0.00243746	0.0311222	0.0300958
chr5	171397164	171397263	2590252	0	+	0.313131	(0.29,0.33]	chr5	257001	38	INTRON	INTRON	NPM1	ENSG00000181163.14	ENST00000517671.5:ENST00000676613.1:ENST00000678186.1:ENST00000678267.1:ENST00000677297.1:ENST00000521672.6:ENST00000679190.1:ENST00000677467.1:ENST00000678280.1:ENST00000676625.1:ENST00000679006.1:ENST00000351986.10:ENST00000676504.1:ENST00000676589.1:ENST00000677357.1:ENST00000679233.1:ENST00000296930.10:ENST00000393820.2:ENST00000521260.2:ENST00000518587.2:ENST00000678774.1:ENST00000677600.1:ENST00000677741.1:ENST00000677325.1:ENST00000677672.1:ENST00000677907.1:ENST00000677904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	62	2	5.1277	5.3487849999999995	5.56987	0.0382902	0.0029307	0.131324	0.0298918
chr18	76424959	76425059	7179369	0	-	0.56	(0.523,0.58]	chr18	730080	443	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	1	135	2	4.27978	5.348554999999999	6.41733	0.00490887	0.00107949	0.0457614	0.0149203
chr12	31494013	31494112	5407220	0	-	0.323232	(0.29,0.33]	chr12	529583	134	INTRON	INTRON	DENND5B	ENSG00000170456.16	ENST00000389082.10:ENST00000536562.5:ENST00000354285.8:ENST00000546299.1:ENST00000545147.5:ENST00000544698.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	62	2	5.29626	5.348385	5.40051	0.0252356	0.005619	0.108065	0.0462026
chr13	112526048	112526146	5752173	0	-	0.377551	(0.36,0.39]	chr13	563913	32	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000462580.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	66	2	4.82572	5.34828	5.87084	0.0751666	0.00196738	0.172839	0.022768300000000002
chr10	75657887	75657987	4522742	0	+	0.52	(0.485,0.523]	chr10	432271	99	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	5.12092	5.348075	5.57523	0.0414411	0.00274261	0.136301	0.028553
chr2	74032205	74032305	834321	0	+	0.5	(0.485,0.523]	chr2	94249	287	INTRON	INTRON	TET3	ENSG00000187605.16	ENST00000409262.8:ENST00000305799.8	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.12092	5.348075	5.57523	0.0414411	0.00274261	0.136301	0.028553
chr10	131919585	131919685	4616212	0	+	0.57	(0.523,0.58]	chr10	441069	66	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	63	2	5.14602	5.34807	5.55012	0.0217068	0.00734367	0.100615	0.0550721
chr16	68054473	68054573	6474379	0	+	0.53	(0.523,0.58]	chr16	642958	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	DUS2	ENSG00000167264.18	ENST00000570709.6:ENST00000575677.5:ENST00000566306.5:ENST00000358896.10:ENST00000568099.6:ENST00000565263.6:ENST00000432752.5:ENST00000562246.2:ENST00000561965.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	63	2	5.14602	5.34807	5.55012	0.0217068	0.00734367	0.100615	0.0550721
chr21	45451225	45451325	7630775	0	+	0.53	(0.523,0.58]	chr21	797656	454	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.14602	5.34807	5.55012	0.0217068	0.00734367	0.100615	0.0550721
chr3	48427195	48427292	1766706	0	-	0.556701	(0.523,0.58]	chr3	182283	15	INTRON	INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	5.14602	5.34807	5.55012	0.0217068	0.00734367	0.100615	0.0550721
chr10	103830624	103830724	4758411	0	-	0.35	(0.33,0.36]	chr10	454819	289	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	4.65869	5.348045	6.0374	0.0248983	0.0113089	0.114418	0.0722887
chr12	122092463	122092563	5343513	0	+	0.46	(0.45,0.485]	chr12	521864	128	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.01267	5.3479849999999995	5.6833	0.0195193	0.011221	0.0955413	0.071709
chr20	44359743	44359843	7482505	0	+	0.47	(0.45,0.485]	chr20	779618	35	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.01267	5.3479849999999995	5.6833	0.0195193	0.011221	0.0955413	0.071709
chr8	18727000	18727100	3949239	0	-	0.49	(0.485,0.523]	chr8	377204	430	INTRON	INTRON	PSD3	ENSG00000156011.18	ENST00000327040.13:ENST00000440756.4:ENST00000286485.12:ENST00000523619.5:ENST00000518315.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	62	2	5.30159	5.34764	5.39369	0.0275819	0.00529578	0.112782	0.044517
chr1	245815014	245815114	698922	0	-	0.44	(0.419,0.45]	chr1	82358	2	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000493441.5:ENST00000488153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	70	2	4.78575	5.34742	5.90909	0.0224633	0.0184411	0.108193	0.0927235
chr4	914260	914352	2178764	0	-	0.663043	(0.58,1]	chr4	220690	2	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000512325.3:ENST00000510022.5:ENST00000511229.5:ENST00000511983.5:ENST00000628912.1:ENST00000513935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	60	2	5.25731	5.347415	5.43752	0.0156166	0.00358178	0.0849828	0.0342681
chr11	33332490	33332589	4838241	0	+	0.333333	(0.33,0.36]	chr11	462603	35	INTRON	INTRON	HIPK3	ENSG00000110422.12	ENST00000525975.5:ENST00000303296.9:ENST00000379016.7:ENST00000456517.2:ENST00000534262.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	4.95163	5.347355	5.74308	0.0583482	0.00238447	0.155373	0.0260514
chr3	188664500	188664600	1656916	0	+	0.33	(0.29,0.33]	chr3	173813	543	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000471917.1:ENST00000415906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	5.13716	5.347265	5.55737	0.0196268	0.00805226	0.095549	0.0582806
chr10	79175316	79175416	4533110	0	+	0.55	(0.523,0.58]	chr10	432438	128	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	140	2	3.93421	5.3471899999999994	6.76017	0.00274644	0.00258949	0.0321874	0.028553
chr3	196375137	196375237	1987423	0	-	0.41	(0.39,0.419]	chr3	202345	27	INTRON	INTRON	UBXN7	ENSG00000163960.12	ENST00000296328.9:ENST00000429160.1:ENST00000428095.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	67	2	4.92679	5.34718	5.76757	0.0204917	0.0160946	0.0979776	0.0896852
chr2	11311618	11311718	1089071	0	-	0.39	(0.36,0.39]	chr2	118747	235	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	233	2	3.81691	5.347155	6.8774	0.00312796	8.22006e-4	0.0356998	0.0124043
chr1	36293450	36293550	92481	0	+	0.4	(0.39,0.419]	chr1	10798	2	SS3_PROX	SS3_PROX:INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10:ENST00000466743.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	5.24182	5.34714	5.45246	0.0441194	0.00529344	0.140174	0.044517
chr17	243529	243628	6820705	0	-	0.414141	(0.39,0.419]	chr17	689558	91	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000570893.5:ENST00000576001.5:ENST00000570954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	5.24182	5.34714	5.45246	0.0441194	0.00529344	0.140174	0.044517
chr17	958904	959004	6826424	0	-	0.41	(0.39,0.419]	chr17	690074	256	INTRON	INTRON	NXN	ENSG00000167693.17	ENST00000336868.8:ENST00000575171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	63	2	5.24182	5.34714	5.45246	0.0441194	0.00529344	0.140174	0.044517
chr1	17671088	17671188	54922	0	+	0.69	(0.58,1]	chr1	5603	61	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	63	2	4.95814	5.34708	5.73602	0.00904546	0.0074469	0.0637469	0.0553519
chr18	11078008	11078108	7119217	0	-	0.46	(0.45,0.485]	chr18	724490	114	INTRON	INTRON	PIEZO2	ENSG00000154864.14	ENST00000302079.10:ENST00000674853.1:ENST00000383408.7:ENST00000503781.7:ENST00000580640.5:ENST00000582913.5:ENST00000686869.1:ENST00000688929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	68	2	4.64346	5.34703	6.0506	0.0850039	9.38528e-4	0.181766	0.0135546
chr4	105425716	105425816	2298015	0	-	0.39	(0.36,0.39]	chr4	231293	10	INTRON	INTRON	PPA2	ENSG00000138777.20	ENST00000341695.10:ENST00000348706.9:ENST00000509031.5:ENST00000351450.10:ENST00000354147.7:ENST00000432483.6:ENST00000515567.5:ENST00000503171.5:ENST00000510015.5:ENST00000509426.5:ENST00000508518.5:ENST00000514209.5:ENST00000506815.5:ENST00000457404.6:ENST00000502833.5:ENST00000504028.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	66	2	4.98942	5.346995	5.70457	0.022152	0.0141427	0.101784	0.0833845
chr2	45596852	45596952	1139361	0	-	0.52	(0.485,0.523]	chr2	124672	107	INTRON	INTRON	SRBD1	ENSG00000068784.13	ENST00000263736.5	protein_coding	protein_coding	protein_coding	protein_coding	1	164	2	3.95634	5.34695	6.73756	0.00998338	1.13097e-4	0.0673647	0.0030016
chr14	58419343	58419442	5989774	0	-	0.545455	(0.523,0.58]	chr14	587526	70	INTRON	INTRON	TIMM9	ENSG00000100575.14	ENST00000395159.7:ENST00000216463.8:ENST00000555593.5:ENST00000556007.6:ENST00000557397.5:ENST00000556367.6:ENST00000555930.6:ENST00000555404.5:ENST00000555097.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	137	2	4.59411	5.3468599999999995	6.09961	0.00866655	4.40994e-4	0.0623824	0.00800597
chr1	197551058	197551158	638109	0	-	0.39	(0.36,0.39]	chr1	75418	39	INTRON	INTRON	DENND1B	ENSG00000213047.13	ENST00000620048.6:ENST00000294737.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	63	2	5.19713	5.346774999999999	5.49642	0.0462258	0.00476539	0.143138	0.0414441
chr3	33520766	33520866	1733941	0	-	0.39	(0.36,0.39]	chr3	179450	32	INTRON	INTRON	CLASP2	ENSG00000163539.18	ENST00000399362.8:ENST00000682230.1:ENST00000468888.6:ENST00000359576.9:ENST00000650653.1:ENST00000480013.6:ENST00000461133.8:ENST00000487553.5:ENST00000635664.1:ENST00000476251.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	63	2	5.19713	5.346774999999999	5.49642	0.0462258	0.00476539	0.143138	0.0414441
chr16	50341975	50342074	6587932	0	-	0.353535	(0.33,0.36]	chr16	658565	15	INTRON	INTRON	BRD7	ENSG00000166164.16	ENST00000394688.8:ENST00000394689.2:ENST00000475877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	140	2	4.22671	5.34666	6.46661	0.00539516	0.00154065	0.0483725	0.0192047
chr4	2068592	2068692	1997262	0	+	0.5	(0.485,0.523]	chr4	203663	46	UTR3	UTR3:EXON_MRNA	NAT8L	ENSG00000185818.8	ENST00000423729.3	protein_coding	protein_coding	protein_coding	protein_coding	2	221	2	4.84198	5.346640000000001	5.8513	0.0131886	5.32834e-5	0.0785398	0.00172247
chr16	18832539	18832639	6560058	0	-	0.37	(0.36,0.39]	chr16	653950	2	SS5_PROX	SS5_PROX:INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.33106	5.346585	5.36211	0.0383628	0.00643924	0.131324	0.0503748
chr8	109272319	109272416	4041487	0	-	0.381443	(0.36,0.39]	chr8	385638	5	INTRON	INTRON	NUDCD1	ENSG00000120526.12	ENST00000239690.9:ENST00000677182.1:ENST00000678168.1:ENST00000679027.1:ENST00000678094.1:ENST00000519607.5:ENST00000427660.6:ENST00000676569.1:ENST00000677737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	63	2	5.33106	5.346585	5.36211	0.0383628	0.00643924	0.131324	0.0503748
chr11	70809369	70809469	5062377	0	-	0.49	(0.485,0.523]	chr11	492713	18	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	5.14248	5.34651	5.55054	0.0215787	0.00761903	0.100612	0.0561937
chr2	121338770	121338869	1261065	0	-	0.434343	(0.419,0.45]	chr2	135874	11	UTR3	UTR3:EXON_MRNA	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8	protein_coding	protein_coding	protein_coding	protein_coding	1	147	2	3.97869	5.346475	6.71426	0.0050028	0.00330911	0.0463896	0.0324356
chr10	37839510	37839610	4673960	0	-	0.35	(0.33,0.36]	chr10	445799	10	INTRON	INTRON	ZNF248	ENSG00000198105.16	ENST00000615949.6:ENST00000485560.5:ENST00000395867.8:ENST00000357328.8:ENST00000611278.4:ENST00000374648.7:ENST00000395873.7:ENST00000395874.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	64	2	5.11654	5.346439999999999	5.57634	0.0237329	0.00998589	0.10525	0.0667545
chr10	45860687	45860787	4678176	0	-	0.38	(0.36,0.39]	chr10	446183	54	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000610690.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	0	64	2	4.99672	5.34623	5.69574	0.0604395	0.00299965	0.158506	0.030427
chr6	82995506	82995606	3193509	0	-	0.37	(0.36,0.39]	chr6	309574	377	INTRON	INTRON	UBE3D	ENSG00000118420.17	ENST00000369747.8:ENST00000237186.10:ENST00000509102.5:ENST00000430071.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	64	2	4.99672	5.34623	5.69574	0.0604395	0.00299965	0.158506	0.030427
chr22	37743832	37743932	7721745	0	+	0.55	(0.523,0.58]	chr22	808630	24	INTRON	INTRON	TRIOBP	ENSG00000100106.22	ENST00000644935.1:ENST00000344404.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	65	2	4.96714	5.346005	5.72487	0.0163679	0.0108948	0.0875379	0.0706366
chr16	85376841	85376941	6516839	0	+	0.68	(0.58,1]	chr16	646391	175	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	4.89007	5.345985	5.8019	0.00872525	0.007984	0.0612699	0.0596361
chr19	47227657	47227757	7392357	0	-	0.61	(0.58,1]	chr19	768099	1	SS5_PROX	SS5_PROX:INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	1	125	2	4.35759	5.34598	6.33437	0.00276493	5.87814e-4	0.0332418	0.009801
chr8	23064067	23064167	3954958	0	-	0.5	(0.485,0.523]	chr8	377513	143	INTRON	INTRON	TNFRSF10B	ENSG00000120889.13	ENST00000276431.9:ENST00000347739.3:ENST00000523504.5:ENST00000519028.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	66	2	4.71964	5.345924999999999	5.97221	0.0718646	9.86421e-4	0.168159	0.0140716
chr6	128135462	128135562	3253308	0	-	0.4	(0.39,0.419]	chr6	315160	451	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000531050.5:ENST00000524534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	63	2	5.32971	5.34563	5.36155	0.0390381	0.00648185	0.131575	0.0503748
chr17	17829272	17829371	6865816	0	-	0.393939	(0.39,0.419]	chr17	695923	53	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	4.86193	5.345555	5.82918	0.0186329	0.0182739	0.0958352	0.0932878
chr2	151895053	151895152	1281563	0	-	0.40404	(0.39,0.419]	chr2	138041	110	INTRON	INTRON	CACNB4	ENSG00000182389.20	ENST00000539935.7:ENST00000637547.1:ENST00000636901.1:ENST00000635738.1:ENST00000636130.1:ENST00000637217.1:ENST00000637309.1:ENST00000636350.1:ENST00000636598.1:ENST00000636831.1:ENST00000636617.1:ENST00000638005.1:ENST00000636507.1:ENST00000637232.1:ENST00000635930.1:ENST00000636442.1:ENST00000636785.1:ENST00000638091.1:ENST00000636773.1:ENST00000637132.1:ENST00000637762.1:ENST00000637550.1:ENST00000637312.1:ENST00000637436.1:ENST00000635803.1:ENST00000636762.1:ENST00000534999.6:ENST00000637913.1:ENST00000637284.1:ENST00000439467.6:ENST00000637319.1:ENST00000637418.1:ENST00000397327.7:ENST00000637330.1:ENST00000638040.1:ENST00000427385.6:ENST00000636721.1:ENST00000636664.1:ENST00000637779.1:ENST00000636380.1:ENST00000636108.1:ENST00000637535.1:ENST00000637491.1:ENST00000360283.11:ENST00000636810.1:ENST00000637530.1:ENST00000635904.1:ENST00000638150.1:ENST00000637514.1:ENST00000637956.1:ENST00000637828.1:ENST00000637765.1:ENST00000201943.10:ENST00000637773.1:ENST00000637216.1:ENST00000636834.1:ENST00000637622.1:ENST00000636947.1:ENST00000470066.2:ENST00000636129.1:ENST00000434468.2:ENST00000635743.1:ENST00000635835.1:ENST00000636496.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	68	2	4.86193	5.345555	5.82918	0.0186329	0.0182739	0.0958352	0.0932878
chr7	138550362	138550462	3502912	0	+	0.38	(0.36,0.39]	chr7	337534	112	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	191	2	3.82818	5.345455	6.86273	0.0032112	0.00146792	0.0362232	0.0185589
chr16	85388036	85388136	6516951	0	+	0.55	(0.523,0.58]	chr16	646391	287	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	193	2	4.715	5.3454	5.9758	0.00239045	9.36996e-4	0.0308863	0.0135546
chr9	129500234	129500332	4250779	0	+	0.663265	(0.58,1]	chr9	404726	14	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	149	2	4.04904	5.345364999999999	6.64169	0.0056478	6.2385e-5	0.0495171	0.00192539
chrX	2393373	2393473	7967778	0	-	0.59	(0.58,1]	chrX	834361	5	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	127	2	4.13012	5.34534	6.56056	0.00171861	0.00116063	0.025659	0.0157704
chr20	36314203	36314303	7469129	0	+	0.63	(0.58,1]	chr20	777805	73	INTRON	INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10	protein_coding	protein_coding	protein_coding	protein_coding	1	125	2	4.44822	5.345335	6.24245	0.00334087	4.4502e-4	0.0368376	0.00806076
chr2	25518601	25518701	1107429	0	-	0.42	(0.419,0.45]	chr2	120876	211	INTRON	INTRON	DTNB	ENSG00000138101.20	ENST00000495466.6:ENST00000496972.6:ENST00000404103.7:ENST00000405222.5:ENST00000407038.7:ENST00000407661.7:ENST00000406818.8:ENST00000398951.6:ENST00000288642.12:ENST00000407186.5:ENST00000356599.9:ENST00000485845.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	65	2	5.09718	5.345165	5.59315	0.029494	0.012235	0.116079	0.0757339
chr8	65750473	65750573	3836551	0	+	0.45	(0.419,0.45]	chr8	368369	220	INTRON	INTRON	MTFR1	ENSG00000066855.16	ENST00000521247.6:ENST00000527155.5	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.09718	5.345165	5.59315	0.029494	0.012235	0.116079	0.0757339
chr2	235546133	235546233	1063059	0	+	0.46	(0.45,0.485]	chr2	115656	212	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	68	2	4.81772	5.345075	5.87243	0.0167663	0.0143887	0.0917029	0.0821732
chr10	132565448	132565548	4617115	0	+	0.47	(0.45,0.485]	chr10	441139	269	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.00859	5.34507	5.68155	0.052901	0.00241241	0.14912	0.0261086
chr22	23223332	23223432	7692418	0	+	0.59	(0.58,1]	chr22	805046	236	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	5.02314	5.34506	5.66698	0.0102927	0.00638322	0.0684871	0.0501889
chr22	46649218	46649318	7744670	0	+	0.66	(0.58,1]	chr22	812052	109	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.02314	5.34506	5.66698	0.0102927	0.00638322	0.0684871	0.0501889
chr10	12219264	12219364	4444377	0	+	0.32	(0.29,0.33]	chr10	425926	14	INTRON	INTRON	CDC123	ENSG00000151465.14	ENST00000429258.6:ENST00000455773.7:ENST00000281141.9:ENST00000378900.6:ENST00000442050.5:ENST00000498747.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	4.89341	5.344965	5.79652	0.0135896	0.0131751	0.0811697	0.0785398
chr10	103596522	103596622	4756047	0	-	0.43	(0.419,0.45]	chr10	454714	26	UTR3	UTR3:EXON_MRNA	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9	protein_coding	protein_coding	protein_coding	protein_coding	1	177	2	3.65337	5.34483	7.03629	0.0216831	1.03265e-4	0.100615	0.00280222
chr11	70702162	70702262	5061302	0	-	0.43	(0.419,0.45]	chr11	492696	30	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	5.04043	5.344735	5.64904	0.0625897	0.00368884	0.160305	0.0348088
chr4	75985023	75985122	2252980	0	-	0.535354	(0.523,0.58]	chr4	227518	26	INTRON	INTRON	SDAD1	ENSG00000198301.12	ENST00000395710.5:ENST00000356260.10:ENST00000395711.8:ENST00000503411.5:ENST00000504975.1:ENST00000514710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	64	2	4.84569	5.34471	5.84373	0.0610722	0.00133116	0.158506	0.0173248
chr11	16287310	16287409	5004747	0	-	0.424242	(0.419,0.45]	chr11	484071	30	INTRON	INTRON	SOX6	ENSG00000110693.19	ENST00000396356.7:ENST00000655819.1:ENST00000683767.1:ENST00000316399.10:ENST00000528252.5:ENST00000528429.5:ENST00000527619.6:ENST00000533411.5:ENST00000530378.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	64	2	5.20508	5.34409	5.4831	0.0345118	0.00979452	0.126025	0.0664239
chr3	15098694	15098774	1694740	0	-	0.4375	(0.419,0.45]	chr3	177105	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBSN	ENSG00000131381.12	ENST00000253699.7:ENST00000476527.6:ENST00000449964.6:ENST00000441057.5:ENST00000449050.5:ENST00000507357.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	64	2	5.20508	5.34409	5.4831	0.0345118	0.00979452	0.126025	0.0664239
chr4	78873594	78873692	2072417	0	+	0.44898	(0.419,0.45]	chr4	211741	4	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5:ENST00000507670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	64	2	5.20508	5.34409	5.4831	0.0345118	0.00979452	0.126025	0.0664239
chr11	70583629	70583729	5060109	0	-	0.55	(0.523,0.58]	chr11	492663	803	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	62	2	5.25403	5.34407	5.43411	0.026041	0.00573579	0.109673	0.0467736
chr11	70738787	70738887	5061669	0	-	0.58	(0.523,0.58]	chr11	492701	209	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	5.25403	5.34407	5.43411	0.026041	0.00573579	0.109673	0.0467736
chr2	239269586	239269686	1391404	0	-	0.56	(0.523,0.58]	chr2	148740	180	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	62	2	5.25403	5.34407	5.43411	0.026041	0.00573579	0.109673	0.0467736
chr3	61783690	61783790	1488838	0	+	0.57	(0.523,0.58]	chr3	160092	124	INTRON	INTRON	PTPRG	ENSG00000144724.20	ENST00000474889.6:ENST00000295874.14	protein_coding	protein_coding	protein_coding	protein_coding	1	143	2	4.83722	5.3440449999999995	5.85087	0.0132767	2.14954e-4	0.0787251	0.00476765
chr2	218702539	218702627	1034727	0	+	0.340909	(0.33,0.36]	chr2	112558	7	UTR3	UTR3:EXON_MRNA	STK36	ENSG00000163482.12	ENST00000392105.7:ENST00000295709.8:ENST00000440309.5:ENST00000419433.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	63	2	5.22448	5.34393	5.46338	0.0281891	0.00791583	0.114124	0.057762
chr12	19197724	19197824	5180867	0	+	0.46	(0.45,0.485]	chr12	504123	649	INTRON	INTRON	PLEKHA5	ENSG00000052126.15	ENST00000429027.7:ENST00000540972.5:ENST00000299275.10:ENST00000539256.5:ENST00000538714.5:ENST00000535357.5:ENST00000538034.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	154	2	5.00438	5.34384	5.6833	0.0195193	1.54619e-4	0.0955413	0.00376396
chrX	2841306	2841406	7830935	0	+	0.31	(0.29,0.33]	chrX	822184	108	INTRON	INTRON	GYG2	ENSG00000056998.20	ENST00000381163.7:ENST00000381161.5:ENST00000398806.8:ENST00000520904.3:ENST00000469234.6:ENST00000353656.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	4.85285	5.3438099999999995	5.83477	0.0567079	0.00150459	0.154343	0.0188758
chr11	70702062	70702162	5061301	0	-	0.46	(0.45,0.485]	chr11	492696	29	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	5.2551	5.34341	5.43172	0.0373953	0.00440365	0.130656	0.0393688
chr17	55280482	55280581	6757263	0	+	0.454545	(0.45,0.485]	chr17	681704	120	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	62	2	5.2551	5.34341	5.43172	0.0373953	0.00440365	0.130656	0.0393688
chr9	134340332	134340432	4260826	0	+	0.55	(0.523,0.58]	chr9	406311	133	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	168	2	4.20938	5.34325	6.47712	0.00629905	2.30436e-4	0.0523832	0.00498593
chr20	32131612	32131712	7454390	0	+	0.41	(0.39,0.419]	chr20	775905	151	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000442842.5:ENST00000450829.5:ENST00000217315.9:ENST00000417389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	142	2	4.31149	5.343245	6.375	0.00769302	0.00134114	0.0584869	0.0174212
chr20	46724242	46724341	7488448	0	+	0.414141	(0.39,0.419]	chr20	780623	93	INTRON	INTRON	SLC2A10	ENSG00000197496.6	ENST00000359271.4:ENST00000611837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	5.14823	5.3431049999999995	5.53798	0.0501234	0.0043589	0.147892	0.0391245
chrX	119575794	119575847	7945693	0	+	0.509434	(0.485,0.523]	chrX	831314	1	SS5_PROX	SS5_PROX:INTRON	UBE2A	ENSG00000077721.17	ENST00000696539.1:ENST00000696533.1:ENST00000696534.1:ENST00000346330.6:ENST00000625938.2:ENST00000631185.2:ENST00000630695.2:ENST00000371558.7:ENST00000629303.2:ENST00000628549.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	62	2	5.06999	5.34309	5.61619	0.0445854	0.00247695	0.140478	0.0266492
chr19	39178874	39178973	7259817	0	+	0.555556	(0.523,0.58]	chr19	744220	4	UTR3	UTR3:EXON_MRNA	PAK4	ENSG00000130669.17	ENST00000360442.8:ENST00000321944.8:ENST00000358301.7:ENST00000593690.5:ENST00000599386.5	protein_coding	protein_coding	protein_coding	protein_coding	2	224	2	3.57085	5.342995	7.11514	0.00920787	3.37828e-5	0.0644421	0.00122993
chr22	50682450	50682547	7754994	0	+	0.505155	(0.485,0.523]	chr22	812716	27	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	67	2	4.65198	5.34297	6.03396	0.0783889	8.35707e-4	0.175203	0.012554
chr4	3365789	3365889	2005094	0	+	0.4	(0.39,0.419]	chr4	204663	224	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	63	2	5.31385	5.342785	5.37172	0.0367885	0.0071966	0.129052	0.0543014
chr11	59770113	59770213	4860009	0	+	0.47	(0.45,0.485]	chr11	465484	141	INTRON	INTRON	STX3	ENSG00000166900.17	ENST00000641815.1:ENST00000337979.9:ENST00000533637.5:ENST00000633708.1:ENST00000529177.5:ENST00000530498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	62	2	5.29973	5.34263	5.38553	0.035042	0.00490471	0.12704	0.0422077
chr11	71484944	71485043	4887712	0	+	0.535354	(0.523,0.58]	chr11	471504	6	EXON_MRNA	EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	NADSYN1	ENSG00000172890.13	ENST00000319023.7:ENST00000525200.5:ENST00000529840.5:ENST00000530055.5:ENST00000526039.6:ENST00000531236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	369	2	5.29369	5.34248	5.39127	6.12103e-4	5.29075e-5	0.0145127	0.00171371
chr3	172091681	172091781	1627984	0	+	0.27	[0,0.29]	chr3	170535	444	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	326	2	5.05569	5.342135000000001	5.62858	6.90413e-4	1.46939e-5	0.015484	6.74072e-4
chr9	104909562	104909662	4362240	0	-	0.46	(0.45,0.485]	chr9	416432	54	INTRON	INTRON	ABCA1	ENSG00000165029.17	ENST00000374736.8:ENST00000678995.1:ENST00000423487.6:ENST00000374733.1	protein_coding	protein_coding	protein_coding	protein_coding	1	168	2	4.03598	5.341985	6.64799	0.00940026	1.80357e-4	0.0653252	0.00419938
chr16	81615806	81615906	6509454	0	+	0.44	(0.419,0.45]	chr16	645921	49	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	144	2	4.15996	5.34177	6.52358	0.00689831	0.00210951	0.0553728	0.0239744
chr11	71484447	71484546	4887707	0	+	0.717172	(0.58,1]	chr11	471504	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NADSYN1	ENSG00000172890.13	ENST00000319023.7:ENST00000525200.5:ENST00000529840.5:ENST00000530055.5:ENST00000526039.6:ENST00000531236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	65	2	4.81862	5.3417650000000005	5.86491	0.0102696	0.00707578	0.0678072	0.0558168
chr13	113033471	113033571	5655964	0	+	0.62	(0.58,1]	chr13	555158	2	SS3_PROX	SS3_PROX:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486806.1:ENST00000473345.5	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	4.81862	5.3417650000000005	5.86491	0.0102696	0.00707578	0.0678072	0.0558168
chr2	196902384	196902484	1350927	0	-	0.41	(0.39,0.419]	chr2	143454	4	SS5_PROX	SS5_PROX:INTRON	PGAP1	ENSG00000197121.15	ENST00000354764.9:ENST00000423035.5:ENST00000470179.5:ENST00000409475.5:ENST00000409188.5:ENST00000374738.3:ENST00000485830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	199	2	3.42492	5.34168	7.25844	0.00416482	0.00161191	0.037856	0.0248552
chr11	64146455	64146554	5049042	0	-	0.676768	(0.58,1]	chr11	490257	197	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	228	2	3.6014	5.341675	7.08195	5.47872e-4	4.72427e-4	0.0136476	0.00838004
chr16	89433024	89433123	6661164	0	-	0.40404	(0.39,0.419]	chr16	666753	13	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	142	2	4.3501	5.34159	6.33308	0.00825437	0.00121191	0.0609913	0.0162672
chr8	30807900	30807999	3963872	0	-	0.343434	(0.33,0.36]	chr8	378738	78	INTRON	INTRON	PPP2CB	ENSG00000104695.13	ENST00000221138.9:ENST00000518564.1:ENST00000518243.5:ENST00000520056.1:ENST00000520500.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	67	2	4.8729	5.341395	5.80989	0.0164782	0.0164265	0.091341	0.0877406
chr13	112818504	112818603	5653832	0	+	0.606061	(0.58,1]	chr13	554938	19	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000459908.5:ENST00000418678.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	61	2	4.88945	5.34114	5.79283	0.0388928	8.4246e-4	0.131324	0.0125912
chr18	77119522	77119622	7181516	0	-	0.52	(0.485,0.523]	chr18	730186	139	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1:ENST00000583798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	67	2	4.83072	5.341010000000001	5.8513	0.0148956	0.0131886	0.0847741	0.0785398
chr2	665252	665350	1079797	0	-	0.469388	(0.45,0.485]	chr2	117536	15	UTR3	UTR3:EXON_MRNA	TMEM18	ENSG00000151353.15	ENST00000281017.8	protein_coding	protein_coding	protein_coding	protein_coding	1	139	2	4.54047	5.34083	6.14119	0.00917101	5.92094e-4	0.064285	0.00985627
chr1	43563708	43563807	107076	0	+	0.565657	(0.523,0.58]	chr1	13192	94	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	167	2	4.18159	5.340415	6.49924	0.00663351	2.16101e-4	0.0540577	0.00477041
chr15	99601940	99602024	6198700	0	+	0.452381	(0.45,0.485]	chr15	609961	1	UTR5	UTR5:EXON_MRNA:INTRON	MEF2A	ENSG00000068305.18	ENST00000560493.5:ENST00000354410.9:ENST00000558812.5:ENST00000558856.5:ENST00000685785.1:ENST00000559036.5:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000558049.5:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1:ENST00000559903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	62	2	5.33781	5.34041	5.34301	0.0328801	0.0054758	0.122593	0.0454065
chr1	1222345	1222444	380410	0	-	0.747475	(0.58,1]	chr1	42841	11	INTRON	INTRON	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000403997.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	5.20223	5.3403100000000006	5.47839	0.0145198	0.00411607	0.0823104	0.0374453
chr17	83026774	83026874	6990815	0	-	0.64	(0.58,1]	chr17	715120	119	INTRON	INTRON	B3GNTL1	ENSG00000175711.9	ENST00000320865.4:ENST00000576599.5:ENST00000570947.5:ENST00000571954.5:ENST00000573629.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	5.20223	5.3403100000000006	5.47839	0.0145198	0.00411607	0.0823104	0.0374453
chr5	1101714	1101813	2608868	0	-	0.646465	(0.58,1]	chr5	259667	71	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.20223	5.3403100000000006	5.47839	0.0145198	0.00411607	0.0823104	0.0374453
chr7	215662	215761	3305811	0	+	0.69697	(0.58,1]	chr7	320161	63	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.20223	5.3403100000000006	5.47839	0.0145198	0.00411607	0.0823104	0.0374453
chr16	85451210	85451310	6517583	0	+	0.49	(0.485,0.523]	chr16	646391	919	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	153	2	3.57804	5.34013	7.10222	0.00685872	0.00132433	0.0526888	0.0222129
chr7	56025129	56025229	3592797	0	-	0.39	(0.36,0.39]	chr7	346527	35	INTRON	INTRON	PSPH	ENSG00000146733.14	ENST00000437355.6:ENST00000275605.8:ENST00000395471.7:ENST00000459834.5:ENST00000421626.5:ENST00000427797.5:ENST00000421312.5:ENST00000419984.6:ENST00000424596.1:ENST00000416592.1:ENST00000413218.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	63	2	5.1004	5.33994	5.57948	0.0526991	0.00393844	0.14912	0.0367306
chr13	113330777	113330877	5753238	0	-	0.62	(0.58,1]	chr13	564094	43	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.08534	5.339905	5.59447	0.0117666	0.00549379	0.0737098	0.0454065
chr4	183243629	183243728	2168844	0	+	0.434343	(0.419,0.45]	chr4	219519	30	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000508614.5:ENST00000448232.6:ENST00000513834.5:ENST00000427431.5:ENST00000438543.5:ENST00000504005.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	71	2	4.7145	5.339625	5.96475	0.0256236	0.0169309	0.115966	0.088829
chr6	126154234	126154334	3004365	0	+	0.29	[0,0.29]	chr6	293834	380	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000648977.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	174	2	3.8807	5.339505	6.79831	0.00116554	8.38986e-4	0.0206836	0.0125912
chr17	241541	241640	6820685	0	-	0.373737	(0.36,0.39]	chr17	689558	71	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000570893.5:ENST00000576001.5:ENST00000570954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	5.26508	5.33949	5.4139	0.0340874	0.00795848	0.125059	0.0578938
chr19	15641613	15641713	7215369	0	+	0.64	(0.58,1]	chr19	737131	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	172	2	4.74395	5.339345	5.93474	0.00127024	5.58693e-4	0.0217309	0.00944382
chr8	128033267	128033366	3920212	0	+	0.515152	(0.485,0.523]	chr8	374311	6	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1	lncRNA	lncRNA	lncRNA	lncRNA	3	484	2	4.4221	5.33929	6.25648	0.00175958	2.47075e-6	0.0260569	1.92772e-4
chr16	29299291	29299391	6433831	0	+	0.43	(0.419,0.45]	chr16	636749	186	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1	lncRNA	lncRNA	lncRNA	lncRNA	0	67	2	4.91849	5.33912	5.75975	0.0231013	0.0174488	0.102982	0.0928044
chrX	106860275	106860375	7929790	0	+	0.43	(0.419,0.45]	chrX	829823	56	INTRON	INTRON	TBC1D8B	ENSG00000133138.20	ENST00000357242.10:ENST00000276175.7:ENST00000431860.1	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.27868	5.33901	5.39934	0.0457732	0.00646489	0.142336	0.0503748
chr16	89295383	89295483	6659759	0	-	0.58	(0.523,0.58]	chr16	666648	32	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	137	2	4.62899	5.338455	6.04792	0.00948306	3.98321e-4	0.0656057	0.00743377
chr19	15644932	15645027	7215403	0	+	0.463158	(0.45,0.485]	chr19	737139	5	INTRON	INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	69	2	4.74641	5.338375	5.93034	0.0193126	0.0130794	0.0994526	0.0782396
chr12	132952156	132952256	5542053	0	-	0.56	(0.523,0.58]	chr12	547064	35	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	62	2	5.01677	5.3381799999999995	5.65959	0.0482765	0.0021416	0.144601	0.0240825
chr22	24092260	24092343	7695281	0	+	0.53012	(0.523,0.58]	chr22	805503	4	SS5_PROX	SS5_PROX:INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.01677	5.3381799999999995	5.65959	0.0482765	0.0021416	0.144601	0.0240825
chr18	69459230	69459330	7083760	0	+	0.33	(0.29,0.33]	chr18	722102	576	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	4.91217	5.3380399999999995	5.76391	0.0522244	0.0018044	0.148503	0.0215053
chr18	36015191	36015291	7145075	0	-	0.47	(0.45,0.485]	chr18	726770	215	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5	protein_coding	protein_coding	protein_coding	protein_coding	1	142	2	3.90828	5.33803	6.76778	0.00323103	0.0029996	0.0348875	0.0319521
chr20	19792921	19793021	7445457	0	+	0.43	(0.419,0.45]	chr20	774777	342	INTRON	INTRON	RIN2	ENSG00000132669.14	ENST00000432334.2:ENST00000648165.1:ENST00000616029.2:ENST00000412571.1:ENST00000255006.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	66	2	4.98054	5.33797	5.6954	0.0254103	0.0154548	0.108573	0.0869771
chr8	105871517	105871617	4036425	0	-	0.42	(0.419,0.45]	chr8	385441	727	INTRON	INTRON	ZFPM2-AS1	ENSG00000251003.9	ENST00000520433.5:ENST00000524045.6:ENST00000520594.5:ENST00000518932.5:ENST00000659633.1:ENST00000509144.2:ENST00000520078.5:ENST00000521622.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	66	2	4.98054	5.33797	5.6954	0.0254103	0.0154548	0.108573	0.0869771
chr12	62770845	62770945	5445751	0	-	0.54	(0.523,0.58]	chr12	535900	329	INTRON	INTRON	PPM1H	ENSG00000111110.12	ENST00000228705.7:ENST00000551519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	63	2	5.08882	5.33781	5.5868	0.020474	0.00834774	0.0979776	0.0598672
chr12	19467882	19467982	5183353	0	+	0.45	(0.419,0.45]	chr12	504355	48	INTRON	INTRON	AEBP2	ENSG00000139154.16	ENST00000538425.5:ENST00000541908.5:ENST00000266508.14:ENST00000398864.7:ENST00000673644.1:ENST00000360995.8:ENST00000673824.1	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.18804	5.33775	5.48746	0.051668	0.00532156	0.148503	0.0446153
chr16	50341280	50341379	6587925	0	-	0.424242	(0.419,0.45]	chr16	658565	8	INTRON	INTRON	BRD7	ENSG00000166164.16	ENST00000394688.8:ENST00000394689.2:ENST00000475877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	5.18804	5.33775	5.48746	0.051668	0.00532156	0.148503	0.0446153
chr2	186063864	186063964	1337936	0	-	0.44	(0.419,0.45]	chr2	142273	45	INTRON	INTRON	LINC01473	ENSG00000237877.7	ENST00000658984.1:ENST00000658990.1:ENST00000655126.1:ENST00000667839.1:ENST00000670612.1:ENST00000668985.1:ENST00000668977.1:ENST00000456653.6:ENST00000661574.1:ENST00000666677.1:ENST00000665629.1:ENST00000671116.1:ENST00000667983.1:ENST00000419719.2:ENST00000667056.1:ENST00000671599.1:ENST00000427108.6:ENST00000659769.1:ENST00000659351.1	lncRNA	lncRNA	lncRNA	lncRNA	0	63	2	5.32195	5.33756	5.35317	0.0431627	0.00714797	0.138403	0.0541241
chr22	20136711	20136810	7686998	0	+	0.424242	(0.419,0.45]	chr22	804236	43	INTRON	INTRON	ZDHHC8	ENSG00000099904.16	ENST00000436518.5:ENST00000334554.12:ENST00000405930.3:ENST00000320602.11:ENST00000468112.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	5.32195	5.33756	5.35317	0.0431627	0.00714797	0.138403	0.0541241
chr1	173204910	173205010	618739	0	-	0.44	(0.419,0.45]	chr1	73214	2	SS5_PROX	SS5_PROX:INTRON	TNFSF4	ENSG00000117586.11	ENST00000281834.4:ENST00000367718.5:ENST00000488053.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	68	2	4.85365	5.337505	5.82136	0.0210659	0.0197641	0.100774	0.0996078
chr10	18562863	18562963	4642357	0	-	0.42	(0.419,0.45]	chr10	443321	105	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	4.85365	5.337505	5.82136	0.0210659	0.0197641	0.100774	0.0996078
chr20	21238685	21238784	7448902	0	+	0.525253	(0.523,0.58]	chr20	775009	55	INTRON	INTRON	KIZ	ENSG00000088970.16	ENST00000619574.4:ENST00000620891.4:ENST00000611685.4:ENST00000616848.4:ENST00000619189.5:ENST00000616679.4:ENST00000619179.4:ENST00000621366.1:ENST00000451772.5:ENST00000419359.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	147	2	3.69181	5.33738	6.98295	0.00510333	0.00168728	0.0433857	0.0254298
chr7	92290290	92290390	3414583	0	+	0.33	(0.29,0.33]	chr7	329803	434	INTRON	INTRON	ANKIB1	ENSG00000001629.10	ENST00000265742.8	protein_coding	protein_coding	protein_coding	protein_coding	1	150	2	3.63018	5.337260000000001	7.04434	0.00619392	0.0012838	0.0494553	0.0218621
chr12	132952056	132952156	5542052	0	-	0.47	(0.45,0.485]	chr12	547064	34	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	139	2	4.55802	5.3372399999999995	6.11646	0.00956667	5.63543e-4	0.0658012	0.00950156
chr2	54995693	54995793	1147981	0	-	0.45	(0.419,0.45]	chr2	125459	76	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	4.98767	5.337215	5.68676	0.0669167	0.00338051	0.16272	0.0328791
chr6	10588113	10588213	2850428	0	+	0.45	(0.419,0.45]	chr6	278695	8	INTRON	INTRON	GCNT2	ENSG00000111846.20	ENST00000410107.5:ENST00000489225.5:ENST00000397423.7:ENST00000495262.7:ENST00000475577.5:ENST00000489819.5:ENST00000474518.1:ENST00000379597.7:ENST00000485764.1:ENST00000461400.1:ENST00000316170.9:ENST00000459872.1:ENST00000265012.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	64	2	4.98767	5.337215	5.68676	0.0669167	0.00338051	0.16272	0.0328791
chr10	103699013	103699113	4757090	0	-	0.48	(0.45,0.485]	chr10	454791	55	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	5.1123	5.337165000000001	5.56203	0.0458344	0.00322991	0.142336	0.0319521
chr14	91360211	91360310	6038770	0	-	0.474747	(0.45,0.485]	chr14	592153	1	INTRON	INTRON	CCDC88C	ENSG00000015133.20	ENST00000389857.11:ENST00000554872.5:ENST00000553437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	62	2	5.1123	5.337165000000001	5.56203	0.0458344	0.00322991	0.142336	0.0319521
chr19	58207899	58207998	7300139	0	+	0.575758	(0.523,0.58]	chr19	751900	3	INTRON	INTRON	ZNF274	ENSG00000171606.18	ENST00000424679.6:ENST00000617501.5:ENST00000621145.4:ENST00000345813.7:ENST00000619307.4:ENST00000615675.4:ENST00000326804.8:ENST00000610905.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	167	2	3.51606	5.33677	7.15748	0.0216194	2.96091e-5	0.100615	0.00111477
chr6	5640114	5640214	2836177	0	+	0.48	(0.45,0.485]	chr6	277888	264	INTRON	INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000648580.1:ENST00000274680.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	62	2	5.28846	5.3367450000000005	5.38503	0.0308908	0.00612862	0.119556	0.0489549
chr1	62266037	62266134	497487	0	-	0.494845	(0.485,0.523]	chr1	59359	24	INTRON	INTRON	KANK4	ENSG00000132854.19	ENST00000371153.9:ENST00000354381.3:ENST00000371150.5	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.01719	5.336600000000001	5.65601	0.0480495	0.00224147	0.144601	0.024843
chr16	30991928	30992027	6579800	0	-	0.494949	(0.485,0.523]	chr16	657721	28	UTR3	UTR3:EXON_MRNA	STX1B	ENSG00000099365.11	ENST00000215095.11	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.01719	5.336600000000001	5.65601	0.0480495	0.00224147	0.144601	0.024843
chr17	4341663	4341762	6842204	0	-	0.454545	(0.45,0.485]	chr17	692473	60	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1:ENST00000574059.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	137	2	4.20407	5.336449999999999	6.46883	0.00516809	0.00149224	0.0472296	0.0187474
chr2	233134045	233134145	1057955	0	+	0.56	(0.523,0.58]	chr2	115075	30	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000451407.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	68	2	4.7629	5.336435	5.90997	0.0167014	0.012016	0.0917029	0.0743424
chr22	46616685	46616785	7744342	0	+	0.64	(0.58,1]	chr22	812034	390	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000447351.5:ENST00000431155.1	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	4.58025	5.336405	6.09256	0.0172566	0.00452436	0.0923809	0.0436138
chr1	48226674	48226772	120966	0	+	0.591837	(0.58,1]	chr1	15165	15	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	148	2	4.03107	5.33638	6.64169	0.00585987	6.2385e-5	0.0506158	0.00192539
chr1	151213747	151213847	244465	0	+	0.38	(0.36,0.39]	chr1	27795	2	SS5_PROX	SS5_PROX:INTRON	PIP5K1A	ENSG00000143398.20	ENST00000447555.5:ENST00000349792.9:ENST00000368888.9:ENST00000409426.5:ENST00000368890.8:ENST00000441902.6:ENST00000424999.1:ENST00000454769.2:ENST00000418435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	142	2	4.10321	5.336315	6.56942	0.00538431	0.00228451	0.0482946	0.0252966
chr15	55670844	55670944	6271463	0	-	0.49	(0.485,0.523]	chr15	618123	141	INTRON	INTRON	PRTG	ENSG00000166450.13	ENST00000389286.9:ENST00000561465.1	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.08528	5.3362549999999995	5.58723	0.0203514	0.0086528	0.0979211	0.0612699
chr3	75423642	75423738	1833313	0	-	0.5	(0.485,0.523]	chr3	188403	1	INTRON	INTRON	FAM86DP	ENSG00000244026.7	ENST00000689037.1:ENST00000478666.6:ENST00000689507.1:ENST00000692276.1:ENST00000690400.1:ENST00000497543.5:ENST00000690979.1:ENST00000484945.6:ENST00000686855.1:ENST00000459803.6:ENST00000489609.6:ENST00000690600.1:ENST00000685730.1:ENST00000689430.1:ENST00000689391.1:ENST00000477247.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	63	2	5.08528	5.3362549999999995	5.58723	0.0203514	0.0086528	0.0979211	0.0612699
chr16	12170416	12170516	6391572	0	+	0.59	(0.58,1]	chr16	631959	348	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.26138	5.33616	5.41094	0.021217	0.00240622	0.0996078	0.0261006
chr2	238269474	238269569	1388928	0	-	0.536842	(0.523,0.58]	chr2	148518	1	INTRON	INTRON	PER2	ENSG00000132326.12	ENST00000254657.8:ENST00000355768.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	354	2	5.11094	5.33589	5.56084	0.00108504	2.26731e-5	0.019846	9.21511e-4
chr16	85373343	85373443	6516804	0	+	0.5	(0.485,0.523]	chr16	646391	140	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	4.33772	5.335805000000001	6.33389	0.03818	0.00567224	0.140822	0.0496143
chrX	52957541	52957639	8043483	0	-	0.489796	(0.485,0.523]	chrX	839361	14	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	FAM156A	ENSG00000268350.8	ENST00000613284.1:ENST00000611661.4:ENST00000622732.5:ENST00000622323.5:ENST00000612083.5:ENST00000610625.5:ENST00000618601.5:ENST00000619373.5:ENST00000622447.5:ENST00000619518.5:ENST00000617970.4:ENST00000622197.5:ENST00000612846.5:ENST00000612915.4:ENST00000615092.4:ENST00000623782.3:ENST00000596733.7:ENST00000616592.1:ENST00000619897.4:ENST00000616235.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	74	2	4.52142	5.33568	6.14994	0.0273555	0.00788098	0.119337	0.059464500000000003
chr15	34554754	34554853	6218166	0	-	0.484848	(0.45,0.485]	chr15	612407	4	INTRON	INTRON	GOLGA8B	ENSG00000215252.12	ENST00000683415.1:ENST00000569100.5:ENST00000484716.5:ENST00000564575.5:ENST00000566091.5:ENST00000566258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	63	2	5.12938	5.3356200000000005	5.54186	0.0243502	0.00873194	0.106588	0.0612699
chr2	207744206	207744304	1004461	0	+	0.479592	(0.45,0.485]	chr2	110256	15	INTRON	INTRON	CCNYL1	ENSG00000163249.13	ENST00000392209.7:ENST00000295414.8:ENST00000339882.9:ENST00000650811.1:ENST00000452312.1:ENST00000420321.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	63	2	5.12938	5.3356200000000005	5.54186	0.0243502	0.00873194	0.106588	0.0612699
chr13	51397768	51397867	5715374	0	-	0.484848	(0.45,0.485]	chr13	560745	19	INTRON	INTRON	INTS6	ENSG00000102786.15	ENST00000398119.6:ENST00000311234.9:ENST00000469430.5:ENST00000497989.5:ENST00000486195.6:ENST00000491189.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	141	2	3.93538	5.33552	6.73566	0.00318291	0.00301535	0.0360488	0.0305643
chr14	94452528	94452628	6046668	0	-	0.48	(0.45,0.485]	chr14	593142	4	SS5_PROX	SS5_PROX:INTRON	SERPINA11	ENSG00000186910.4	ENST00000334708.4	protein_coding	protein_coding	protein_coding	protein_coding	1	172	2	4.2327	5.335215	6.43773	0.0065939	3.27319e-4	0.0538851	0.00645438
chr2	138420284	138420384	1277671	0	-	0.48	(0.45,0.485]	chr2	137676	14	INTRON	INTRON	SPOPL-DT	ENSG00000228043.5	ENST00000431985.5	lncRNA	lncRNA	lncRNA	lncRNA	1	170	2	3.51602	5.335165	7.15431	0.0229356	4.04936e-5	0.102982	0.00140723
chr14	37656571	37656671	5787539	0	+	0.44	(0.419,0.45]	chr14	567076	332	INTRON	INTRON	TTC6	ENSG00000139865.17	ENST00000553443.6:ENST00000533625.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	65	2	4.87598	5.335155	5.79433	0.0768574	0.00262626	0.174882	0.0278348
chr13	29551963	29552063	5677536	0	-	0.46	(0.45,0.485]	chr13	557653	154	INTRON	INTRON	SLC7A1	ENSG00000139514.13	ENST00000380752.10:ENST00000450494.1	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	4.77571	5.33507	5.89443	0.0719884	0.00141013	0.168159	0.0180659
chr10	18566860	18566960	4642397	0	-	0.39	(0.36,0.39]	chr10	443321	145	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	172	2	3.96965	5.335045	6.70044	0.0118732	2.25359e-4	0.0741071	0.00492301
chr14	90274743	90274843	6032139	0	-	0.43	(0.419,0.45]	chr14	591598	70	UTR3	UTR3:EXON_MRNA	NRDE2	ENSG00000119720.18	ENST00000354366.8	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.1405	5.335045	5.52959	0.0550015	0.00484244	0.153337	0.0418176
chr5	59224314	59224414	2666372	0	-	0.37	(0.36,0.39]	chr5	264329	76	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000503258.5:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	70	2	4.72331	5.334845	5.9463800000000004	0.0236929	0.0151971	0.111208	0.084474
chr4	10101319	10101418	2195663	0	-	0.626263	(0.58,1]	chr4	222412	18	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	5.16453	5.33475	5.50497	0.0249802	0.00187297	0.10758	0.0219434
chr5	78645534	78645633	2703346	0	-	0.464646	(0.45,0.485]	chr5	266670	8	INTRON	INTRON	LHFPL2	ENSG00000145685.14	ENST00000380345.7:ENST00000503686.5:ENST00000512759.5:ENST00000514587.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	166	2	3.75426	5.3347	6.91514	0.0153755	8.2790699999999993e-05	0.0849828	0.00237398
chr2	232899475	232899574	1383833	0	-	0.454545	(0.45,0.485]	chr2	147952	42	INTRON	INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000416114.3:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	223	2	3.8389	5.334425	6.82995	0.00267274	6.28362e-4	0.0327654	0.0102447
chr17	80323935	80324034	6807824	0	+	0.383838	(0.36,0.39]	chr17	687450	26	INTRON	INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000559070.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	63	2	5.04949	5.33439	5.61929	0.0563927	0.00359045	0.154188	0.0342681
chr3	17496379	17496479	1702329	0	-	0.39	(0.36,0.39]	chr3	177733	675	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	63	2	5.04949	5.33439	5.61929	0.0563927	0.00359045	0.154188	0.0342681
chr9	4714283	4714381	4269913	0	-	0.44898	(0.419,0.45]	chr9	407900	8	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	1	150	2	4.70351	5.33413	5.96475	0.0169309	5.07558e-4	0.088829	0.00883248
chr22	29642385	29642485	7708746	0	+	0.43	(0.419,0.45]	chr22	806559	1	SS5_PROX	SS5_PROX:INTRON	NF2	ENSG00000186575.19	ENST00000413209.6:ENST00000672805.1:ENST00000403435.5:ENST00000672461.1:ENST00000361452.8:ENST00000338641.10:ENST00000672896.1:ENST00000403999.7:ENST00000334961.11:ENST00000353887.8:ENST00000432151.5:ENST00000361676.8:ENST00000397789.3:ENST00000673312.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	65	2	5.04004	5.334045	5.62805	0.0280406	0.0137308	0.113651	0.0814223
chrX	12801189	12801288	7846784	0	+	0.424242	(0.419,0.45]	chrX	822715	14	INTRON	INTRON	PRPS2	ENSG00000101911.13	ENST00000380663.7:ENST00000398491.6:ENST00000380668.10:ENST00000489404.5:ENST00000461630.1	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	5.04004	5.334045	5.62805	0.0280406	0.0137308	0.113651	0.0814223
chr10	119360649	119360749	4594854	0	+	0.56	(0.523,0.58]	chr10	439173	337	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	1	163	2	4.00257	5.33376	6.66495	0.0092178	1.32802e-4	0.0644666	0.00337193
chr14	89255610	89255710	6026654	0	-	0.47	(0.45,0.485]	chr14	591432	244	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	166	2	3.73584	5.333575	6.93131	0.015867	7.8924e-5	0.0859576	0.0022885
chr6	158021584	158021684	3059708	0	+	0.68	(0.58,1]	chr6	297373	34	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	1	125	2	4.18386	5.333105	6.48235	0.00202884	9.90719e-4	0.0283135	0.0141138
chr14	89204834	89204934	6026143	0	-	0.33	(0.29,0.33]	chr14	591423	140	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000555010.1:ENST00000557718.5:ENST00000553353.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	173	2	4.4398	5.3329	6.226	0.00374266	5.29368e-4	0.0393941	0.0090868
chr20	58697086	58697185	7498654	0	+	0.525253	(0.523,0.58]	chr20	782002	21	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	61	2	5.21727	5.33286	5.44845	0.0361597	0.00361636	0.127853	0.0342681
chr7	99381551	99381651	3427412	0	+	0.53	(0.523,0.58]	chr7	331164	37	INTRON	INTRON	ARPC1B	ENSG00000130429.16	ENST00000443222.6:ENST00000414376.6:ENST00000645391.1:ENST00000695607.1:ENST00000455009.6:ENST00000484375.5:ENST00000695608.1:ENST00000418347.6:ENST00000646101.2:ENST00000427217.6:ENST00000451682.5:ENST00000431816.6:ENST00000458033.6:ENST00000417330.6:ENST00000695609.1:ENST00000484600.6:ENST00000429246.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	61	2	5.21727	5.33286	5.44845	0.0361597	0.00361636	0.127853	0.0342681
chr2	73266898	73266993	1190597	0	-	0.557895	(0.523,0.58]	chr2	129025	2	SS3_PROX	SS3_PROX:INTRON	FBXO41	ENSG00000163013.12	ENST00000295133.9:ENST00000520530.3:ENST00000521871.5	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.26332	5.332785	5.40225	0.0337698	0.00404292	0.124319	0.0371291
chr4	3367185	3367285	2005108	0	+	0.68	(0.58,1]	chr4	204663	238	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	60	2	4.94882	5.33255	5.71628	0.0354433	0.00104668	0.127188	0.0146403
chr8	143487746	143487846	4096470	0	-	0.6	(0.58,1]	chr8	389272	24	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6:ENST00000528401.1	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.94882	5.33255	5.71628	0.0354433	0.00104668	0.127188	0.0146403
chr10	18561764	18561864	4642346	0	-	0.39	(0.36,0.39]	chr10	443321	94	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	4.92735	5.33223	5.73711	0.0210765	0.0160072	0.0996078	0.0894586
chr3	9448896	9448979	1402635	0	+	0.46988	(0.45,0.485]	chr3	150196	3	SS5_PROX	SS5_PROX:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1:ENST00000684055.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000691988.1:ENST00000466242.5:ENST00000682236.1:ENST00000488236.5:ENST00000421188.1:ENST00000478961.6:ENST00000476740.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	62	2	5.06138	5.332179999999999	5.60298	0.0492008	0.00292492	0.146142	0.029882
chr17	80290403	80290469	6807475	0	+	0.575758	(0.523,0.58]	chr17	687387	2	SS3_PROX	SS3_PROX:INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000319921.4:ENST00000559070.5:ENST00000573548.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	163	2	3.68393	5.332015	6.9801	0.0162298	5.12704e-5	0.0873195	0.00167326
chr1	120795975	120796074	225513	0	+	0.323232	(0.29,0.33]	chr1	24879	21	INTRON	INTRON	NBPF26	ENSG00000273136.8	ENST00000620612.5:ENST00000652763.1:ENST00000651062.1	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.27054	5.3319399999999995	5.39334	0.0308815	0.00448059	0.119556	0.0398484
chr15	68820297	68820397	6312158	0	-	0.61	(0.58,1]	chr15	622254	2	SS5_PROX	SS5_PROX:INTRON	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6:ENST00000560303.1:ENST00000495420.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	59	2	5.11355	5.331665	5.54978	0.0271806	0.00165911	0.112113	0.0202545
chr17	2679217	2679315	6667322	0	+	0.387755	(0.36,0.39]	chr17	667990	12	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000397195.10:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000397193.7:ENST00000574468.1:ENST00000571495.2:ENST00000675574.1:ENST00000675385.1:ENST00000675084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	65	2	4.82572	5.3316	5.83748	0.0751666	0.00213426	0.172839	0.0240825
chr6	1738477	1738577	3080256	0	-	0.37	(0.36,0.39]	chr6	299476	116	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	65	2	4.82572	5.3316	5.83748	0.0751666	0.00213426	0.172839	0.0240825
chr16	85455508	85455608	6517626	0	+	0.59	(0.58,1]	chr16	646391	962	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.14497	5.33155	5.51813	0.013519	0.00474658	0.0792526	0.0413976
chr1	16127181	16127279	403850	0	-	0.530612	(0.523,0.58]	chr1	46423	15	INTRON	INTRON	EPHA2	ENSG00000142627.13	ENST00000358432.8	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.16969	5.331455	5.49322	0.0387762	0.00324246	0.131324	0.0319521
chr13	75390790	75390890	5727092	0	-	0.54	(0.523,0.58]	chr13	561722	136	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.16969	5.331455	5.49322	0.0387762	0.00324246	0.131324	0.0319521
chr22	50680898	50680995	7754978	0	+	0.505155	(0.485,0.523]	chr22	812716	11	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	61	2	5.21769	5.33129	5.44489	0.0359739	0.00377098	0.127853	0.0353672
chr17	80893127	80893206	6812408	0	+	0.683544	(0.58,1]	chr17	687924	3	SS5_PROX	SS5_PROX:INTRON	RPTOR	ENSG00000141564.15	ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	5.31036	5.331250000000001	5.35214	0.0181452	0.00312721	0.0921579	0.0311915
chr14	63444078	63444178	5991977	0	-	0.49	(0.485,0.523]	chr14	587797	216	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556150.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	5.26375	5.33122	5.39869	0.0335928	0.00421243	0.124319	0.0380601
chr2	53898654	53898754	1146968	0	-	0.32	(0.29,0.33]	chr2	125266	3	SS3_PROX	SS3_PROX:INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	136	2	4.53004	5.331065	6.13209	0.00731667	5.7121e-4	0.0568523	0.00960229
chr19	49659933	49660026	7397287	0	-	0.494624	(0.485,0.523]	chr19	769292	1	SS3_PROX	SS3_PROX:INTRON	IRF3	ENSG00000126456.16	ENST00000599680.1:ENST00000377135.8:ENST00000377139.8:ENST00000601291.5:ENST00000596822.5:ENST00000600911.5:ENST00000309877.11:ENST00000597198.5:ENST00000597636.5:ENST00000596644.5:ENST00000599144.5:ENST00000593922.5:ENST00000596765.5:ENST00000599223.5:ENST00000600022.5:ENST00000598808.5:ENST00000596756.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	134	2	4.22394	5.330959999999999	6.43798	0.00469187	0.00129102	0.0447158	0.0170457
chr9	133916262	133916362	4429563	0	-	0.49	(0.485,0.523]	chr9	423310	545	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	134	2	4.22394	5.330959999999999	6.43798	0.00469187	0.00129102	0.0447158	0.0170457
chr8	33452619	33452719	3964771	0	-	0.32	(0.29,0.33]	chr8	378778	10	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	FUT10	ENSG00000172728.16	ENST00000327671.10:ENST00000518672.5:ENST00000524021.1:ENST00000520767.5:ENST00000518076.1:ENST00000416169.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	61	2	5.1769	5.330605	5.48431	0.035586	0.00360762	0.127529	0.0342681
chr12	801347	801447	5149114	0	+	0.41	(0.39,0.419]	chr12	500572	202	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	4.86193	5.330315000000001	5.7987	0.0195328	0.0182739	0.0958352	0.0955413
chr18	74734658	74734758	7090621	0	+	0.4	(0.39,0.419]	chr18	722426	932	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000582337.5:ENST00000309902.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	4.86193	5.330315000000001	5.7987	0.0195328	0.0182739	0.0958352	0.0955413
chr16	50622406	50622505	6452153	0	+	0.656566	(0.58,1]	chr16	639918	3	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	1	124	2	4.26089	5.3302700000000005	6.39965	0.00241374	7.87512e-4	0.0309229	0.0120243
chr11	67250798	67250898	4879767	0	+	0.53	(0.523,0.58]	chr11	469916	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000308783.9:ENST00000526258.5:ENST00000531696.5:ENST00000530342.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	65	2	4.90222	5.32982	5.75742	0.0155135	0.0125132	0.0849828	0.0765738
chr18	48658756	48658856	7057855	0	+	0.55	(0.523,0.58]	chr18	720311	217	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1:ENST00000589585.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	69	2	4.50593	5.3298000000000005	6.15367	0.094303	5.76607e-4	0.188571	0.00963379
chr10	102646121	102646221	4576485	0	+	0.62	(0.58,1]	chr10	437279	3	SS5_PROX	SS5_PROX:INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	63	2	4.89007	5.329705	5.76934	0.00872525	0.00849371	0.0617717	0.0612699
chr22	46616485	46616585	7744340	0	+	0.63	(0.58,1]	chr22	812034	388	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000447351.5:ENST00000431155.1	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	4.89007	5.329705	5.76934	0.00872525	0.00849371	0.0617717	0.0612699
chr14	39421778	39421878	5968408	0	-	0.39	(0.36,0.39]	chr14	584744	189	INTRON	INTRON	FBXO33	ENSG00000165355.8	ENST00000298097.8:ENST00000554190.1	protein_coding	protein_coding	protein_coding	protein_coding	1	143	2	3.98537	5.329665	6.67396	0.00448681	0.00307113	0.0436138	0.0309223
chr10	131918287	131918387	4616199	0	+	0.55	(0.523,0.58]	chr10	441069	53	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	64	2	4.96714	5.329355	5.69157	0.0172851	0.0108948	0.0897247	0.0706366
chr12	109194427	109194526	5322360	0	+	0.575758	(0.523,0.58]	chr12	518571	3	INTRON	INTRON	ACACB	ENSG00000076555.16	ENST00000338432.12:ENST00000377848.7:ENST00000377854.9	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	4.96714	5.329355	5.69157	0.0172851	0.0108948	0.0897247	0.0706366
chr9	123405287	123405387	4396613	0	-	0.56	(0.523,0.58]	chr9	419589	14	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	4.96714	5.329355	5.69157	0.0172851	0.0108948	0.0897247	0.0706366
chr6	3352160	3352260	3087011	0	-	0.49	(0.485,0.523]	chr6	299774	278	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000496753.1:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	355	2	4.7649	5.3291900000000005	5.89348	0.0021542	8.14489e-6	0.0291415	4.44124e-4
chr16	85400931	85401031	6517080	0	+	0.56	(0.523,0.58]	chr16	646391	416	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	367	2	5.26071	5.32902	5.39733	6.04519e-4	5.86677e-5	0.0144366	0.00184031
chr11	126383599	126383699	4964180	0	+	0.59	(0.58,1]	chr11	479827	81	INTRON	INTRON	ST3GAL4	ENSG00000110080.20	ENST00000534733.6:ENST00000531217.5:ENST00000227495.10:ENST00000676867.1:ENST00000678865.1:ENST00000676545.1:ENST00000444328.7:ENST00000677503.1:ENST00000677721.1:ENST00000530591.5:ENST00000534083.5:ENST00000356132.9:ENST00000528605.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	61	2	4.82753	5.328585	5.82964	0.0427798	7.58111e-4	0.13762	0.0117078
chr4	5782951	5783051	2009955	0	+	0.59	(0.58,1]	chr4	205032	248	INTRON	INTRON	EVC	ENSG00000072840.13	ENST00000264956.11	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.82753	5.328585	5.82964	0.0427798	7.58111e-4	0.13762	0.0117078
chr8	143488046	143488146	4096473	0	-	0.6	(0.58,1]	chr8	389272	27	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6:ENST00000528401.1	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.82753	5.328585	5.82964	0.0427798	7.58111e-4	0.13762	0.0117078
chr21	43722306	43722406	7623816	0	+	0.58	(0.523,0.58]	chr21	796691	4	SS5_PROX	SS5_PROX:INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000476084.1:ENST00000470029.5:ENST00000438837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	5.1205	5.328575	5.53665	0.0416463	0.00291382	0.136301	0.0298557
chr8	23091881	23091981	3772933	0	+	0.54	(0.523,0.58]	chr8	363266	12	INTRON	INTRON	ENSG00000284948	ENSG00000284948.1	ENST00000397703.6	lncRNA	lncRNA	lncRNA	lncRNA	0	61	2	5.1205	5.328575	5.53665	0.0416463	0.00291382	0.136301	0.0298557
chr6	158566525	158566625	3063960	0	+	0.61	(0.58,1]	chr6	297687	59	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	1	170	2	4.72172	5.32823	5.93474	0.00133472	5.58693e-4	0.0223284	0.00944382
chr10	76062682	76062782	4526800	0	+	0.29	[0,0.29]	chr10	432311	35	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	129	2	4.35125	5.328225	6.3052	0.00326385	7.87556e-4	0.0366087	0.0120243
chr13	75392990	75393090	5727114	0	-	0.38	(0.36,0.39]	chr13	561722	158	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	2	189	2	3.91676	5.328215	6.73967	0.00399663	0.00115829	0.0409578	0.0157704
chr11	70791247	70791347	5062194	0	-	0.56	(0.523,0.58]	chr11	492701	734	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	5.30515	5.328195	5.35124	0.0295772	0.00509102	0.116079	0.0433513
chr11	70819863	70819963	5062482	0	-	0.57	(0.523,0.58]	chr11	492714	1	SS5_PROX	SS5_PROX:INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	5.30515	5.328195	5.35124	0.0295772	0.00509102	0.116079	0.0433513
chr14	100430089	100430189	5910730	0	+	0.55	(0.523,0.58]	chr14	577774	476	INTRON	INTRON	WDR25	ENSG00000176473.14	ENST00000555775.5:ENST00000554998.5:ENST00000402312.8:ENST00000335290.10:ENST00000554492.5:ENST00000554175.5:ENST00000557710.5:ENST00000542471.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	61	2	5.30515	5.328195	5.35124	0.0295772	0.00509102	0.116079	0.0433513
chr9	116607699	116607799	4375693	0	-	0.56	(0.523,0.58]	chr9	418111	1198	INTRON	INTRON	ASTN2	ENSG00000148219.18	ENST00000313400.9:ENST00000361209.6:ENST00000373986.7:ENST00000341734.8:ENST00000288520.9:ENST00000361477.8	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.30515	5.328195	5.35124	0.0295772	0.00509102	0.116079	0.0433513
chrX	65515568	65515664	8055029	0	-	0.5625	(0.523,0.58]	chrX	840752	2	INTRON	INTRON	LAS1L	ENSG00000001497.18	ENST00000677056.1:ENST00000677969.1:ENST00000374811.8:ENST00000374807.9:ENST00000677834.1:ENST00000484069.1:ENST00000374804.9:ENST00000677986.1:ENST00000677087.1:ENST00000679056.1:ENST00000679261.1:ENST00000678074.1:ENST00000678705.1:ENST00000679277.1:ENST00000677154.1:ENST00000678547.1:ENST00000678956.1:ENST00000679116.1:ENST00000678848.1:ENST00000678173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	61	2	5.30515	5.328195	5.35124	0.0295772	0.00509102	0.116079	0.0433513
chr2	162004526	162004625	1293620	0	-	0.454545	(0.45,0.485]	chr2	138833	45	INTRON	INTRON	DPP4	ENSG00000197635.11	ENST00000676810.1:ENST00000360534.8:ENST00000678566.1:ENST00000678668.1:ENST00000677015.1:ENST00000678583.1:ENST00000676624.1:ENST00000679104.1:ENST00000676479.1:ENST00000676996.1:ENST00000677212.1:ENST00000678740.1:ENST00000678522.1:ENST00000434918.6:ENST00000676768.1:ENST00000491591.5:ENST00000490286.5:ENST00000416189.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	191	2	4.30981	5.32818	6.34655	0.00642055	3.11284e-4	0.0529785	0.00624487
chr3	30636246	30636346	1433389	0	+	0.25	[0,0.29]	chr3	153006	30	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4:ENST00000673250.1:ENST00000672866.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	334	2	4.64588	5.328145	6.01041	0.0017091	4.08969e-6	0.025659	2.74629e-4
chr17	243429	243529	6820704	0	-	0.36	(0.33,0.36]	chr17	689558	90	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000570893.5:ENST00000576001.5:ENST00000570954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	5.11654	5.328099999999999	5.53966	0.0251076	0.00998589	0.107672	0.0667545
chr10	18554469	18554569	4642273	0	-	0.42	(0.419,0.45]	chr10	443321	21	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	4.56048	5.3278300000000005	6.09518	0.0337332	0.0138177	0.133139	0.0803169
chr3	58283587	58283687	1485218	0	+	0.43	(0.419,0.45]	chr3	159880	84	INTRON	INTRON	ABHD6	ENSG00000163686.15	ENST00000295962.8:ENST00000478253.6	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	4.56048	5.3278300000000005	6.09518	0.0337332	0.0138177	0.133139	0.0803169
chr8	124350473	124350573	4062376	0	-	0.42	(0.419,0.45]	chr8	386949	193	INTRON	INTRON	TMEM65	ENSG00000164983.8	ENST00000297632.8	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	4.56048	5.3278300000000005	6.09518	0.0337332	0.0138177	0.133139	0.0803169
chr5	78812517	78812617	2704952	0	-	0.31	(0.29,0.33]	chr5	266706	292	INTRON	INTRON	ARSB	ENSG00000113273.17	ENST00000264914.10	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.1277	5.32771	5.52772	0.0382902	0.00324812	0.131324	0.0319647
chrX	2841207	2841306	7830934	0	+	0.323232	(0.29,0.33]	chrX	822184	107	INTRON	INTRON	GYG2	ENSG00000056998.20	ENST00000381163.7:ENST00000381161.5:ENST00000398806.8:ENST00000520904.3:ENST00000469234.6:ENST00000353656.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	5.1277	5.32771	5.52772	0.0382902	0.00324812	0.131324	0.0319647
chr17	72562812	72562912	6963939	0	-	0.51	(0.485,0.523]	chr17	710389	284	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	66	2	4.65198	5.327695	6.00341	0.0783889	9.07333e-4	0.175203	0.0132726
chr9	77306323	77306417	4171261	0	+	0.382979	(0.36,0.39]	chr9	396444	3	INTRON	INTRON	VPS13A	ENSG00000197969.14	ENST00000376636.7:ENST00000360280.8:ENST00000643348.1:ENST00000645632.1:ENST00000423463.6:ENST00000493341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	68	2	4.79458	5.3274799999999995	5.86038	0.0207145	0.0174081	0.102713	0.0901374
chr3	13199326	13199426	1691135	0	-	0.61	(0.58,1]	chr3	176566	348	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	1	126	2	4.67156	5.32739	5.98322	0.00562007	2.20504e-4	0.0493906	0.00485102
chr11	68330075	68330175	4882258	0	+	0.51	(0.485,0.523]	chr11	470542	169	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	151	2	3.57804	5.32734	7.07664	0.00685872	0.00139256	0.0526888	0.022808
chr10	131919784	131919884	4616214	0	+	0.53	(0.523,0.58]	chr10	441069	68	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	66	2	4.83424	5.3273150000000005	5.82039	0.0144272	0.0139724	0.0833845	0.0805959
chr2	235682733	235682833	1064426	0	+	0.53	(0.523,0.58]	chr2	115662	113	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6:ENST00000409538.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	66	2	4.83424	5.3273150000000005	5.82039	0.0144272	0.0139724	0.0833845	0.0805959
chr12	26645108	26645208	5399695	0	-	0.45	(0.419,0.45]	chr12	528625	127	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.09718	5.327285	5.55739	0.0310506	0.012235	0.119758	0.0757339
chr13	98415318	98415418	5636422	0	+	0.44	(0.419,0.45]	chr13	553617	29	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000457029.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	5.09718	5.327285	5.55739	0.0310506	0.012235	0.119758	0.0757339
chr18	46094128	46094215	7154313	0	-	0.425287	(0.419,0.45]	chr18	727453	4	INTRON	INTRON	ATP5F1A	ENSG00000152234.16	ENST00000398752.11:ENST00000282050.6:ENST00000593152.6:ENST00000586592.5:ENST00000590665.5:ENST00000590156.5:ENST00000592364.5:ENST00000589252.5:ENST00000589869.5:ENST00000590406.5:ENST00000590324.5:ENST00000590448.5:ENST00000592989.1:ENST00000591981.5:ENST00000585650.1:ENST00000591267.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	64	2	5.09718	5.327285	5.55739	0.0310506	0.012235	0.119758	0.0757339
chr17	80560776	80560875	6809060	0	+	0.545455	(0.523,0.58]	chr17	687806	146	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	63	2	4.84569	5.32721	5.80873	0.0610722	0.00145893	0.158506	0.0184991
chrX	1423832	1423931	7965721	0	-	0.535354	(0.523,0.58]	chrX	834272	16	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	4.84569	5.32721	5.80873	0.0610722	0.00145893	0.158506	0.0184991
chr15	67222201	67222301	6308371	0	-	0.59	(0.58,1]	chr15	622031	11	INTRON	INTRON	AAGAB	ENSG00000103591.13	ENST00000261880.10:ENST00000561452.5:ENST00000542650.5	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.02314	5.327159999999999	5.63118	0.0109983	0.00638322	0.0708586	0.0501889
chr14	95407962	95408061	6048856	0	-	0.50505	(0.485,0.523]	chr14	593438	8	UTR3	UTR3:EXON_MRNA	SYNE3	ENSG00000176438.13	ENST00000682763.1:ENST00000557275.5	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.12092	5.327	5.53308	0.0414411	0.00304306	0.136301	0.0306636
chr9	114074152	114074252	4373769	0	-	0.53	(0.523,0.58]	chr9	418047	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	AMBP	ENSG00000106927.12	ENST00000265132.8:ENST00000540645.5:ENST00000466610.6:ENST00000603230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	350	2	4.93069	5.326840000000001	5.72299	0.00155918	1.34452e-5	0.0243306	6.3536e-4
chr16	50620302	50620401	6452131	0	+	0.565657	(0.523,0.58]	chr16	639912	43	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	3	216	2	3.83031	5.326665	6.82302	0.00229691	5.59415e-4	0.0302623	0.00944901
chr16	87477795	87477895	6655873	0	-	0.69	(0.58,1]	chr16	665821	173	INTRON	INTRON	ZCCHC14	ENSG00000140948.13	ENST00000268616.9:ENST00000671377.2:ENST00000568020.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	179	2	3.36168	5.32654	7.2914	0.00298648	3.40674e-4	0.0303704	0.010549
chr13	113350048	113350148	5753433	0	-	0.67	(0.58,1]	chr13	564102	47	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.25731	5.326385	5.39546	0.0168207	0.00358178	0.0884836	0.0342681
chr2	239275481	239275581	1391463	0	-	0.62	(0.58,1]	chr2	148740	239	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	59	2	5.25731	5.326385	5.39546	0.0168207	0.00358178	0.0884836	0.0342681
chr9	129496751	129496832	4250742	0	+	0.703704	(0.58,1]	chr9	404718	3	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	59	2	5.25731	5.326385	5.39546	0.0168207	0.00358178	0.0884836	0.0342681
chr12	123654623	123654723	5347077	0	+	0.4	(0.39,0.419]	chr12	522779	3	SS3_PROX	SS3_PROX:INTRON	GTF2H3	ENSG00000111358.14	ENST00000618160.4:ENST00000542279.5:ENST00000543341.7:ENST00000228955.11:ENST00000538845.5:ENST00000539994.5:ENST00000537695.5:ENST00000536375.5:ENST00000543415.5:ENST00000538533.5:ENST00000543154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	145	2	4.62657	5.3263750000000005	6.02618	0.0136549	5.77346e-4	0.0798074	0.00964326
chr14	23521701	23521801	5757171	0	+	0.55	(0.523,0.58]	chr14	564963	69	INTRON	INTRON	ZFHX2-AS1	ENSG00000157306.14	ENST00000556354.5:ENST00000553985.1:ENST00000554403.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	178	2	3.87652	5.3263300000000005	6.77614	0.00251197	9.51496e-4	0.031696	0.0136675
chr17	82716996	82717096	6818047	0	+	0.79	(0.58,1]	chr17	689118	1	SS5_PROX	SS5_PROX:INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	64	2	4.81862	5.326185000000001	5.83375	0.0102696	0.00751249	0.0678072	0.0576451
chr7	1023304	1023404	3526456	0	-	0.61	(0.58,1]	chr7	340572	128	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	125	2	4.13012	5.32605	6.52198	0.00186556	0.00116063	0.0269723	0.0157704
chr12	11133120	11133202	5372239	0	-	0.317073	(0.29,0.33]	chr12	526874	3	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000275778:PRH1:TAS2R14:TAS2R30	ENSG00000275778.2:ENSG00000231887.8:ENSG00000212127.6:ENSG00000256188.3	ENST00000536668.2:ENST00000535024.6:ENST00000541977.5:ENST00000381852.4:ENST00000546265.1:ENST00000541175.1:ENST00000539585.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	134	2	4.37749	5.3260000000000005	6.27451	0.00564709	8.77694e-4	0.0495171	0.0129747
chr12	57161115	57161215	5240738	0	+	0.55	(0.523,0.58]	chr12	510235	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LRP1	ENSG00000123384.14	ENST00000243077.8	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.02927	5.325925	5.62258	0.0193313	0.0095202	0.0954446	0.0650078
chr7	100580574	100580674	3654722	0	-	0.42	(0.419,0.45]	chr7	352212	19	EXON_MRNA	EXON_MRNA:INTRON	LRCH4	ENSG00000077454.17	ENST00000310300.11:ENST00000467201.5:ENST00000497245.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	70	2	4.7145	5.325845	5.93719	0.0256236	0.0176643	0.115966	0.0909046
chr19	55271032	55271131	7407628	0	-	0.40404	(0.39,0.419]	chr19	771326	44	INTRON	INTRON	HSPBP1	ENSG00000133265.11	ENST00000433386.7:ENST00000255631.9:ENST00000587922.5:ENST00000585927.1:ENST00000587959.1	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.16048	5.32568	5.49088	0.0309972	0.00999413	0.119758	0.0667545
chr16	334460	334560	6529853	0	-	0.52	(0.485,0.523]	chr16	648381	194	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	63	2	4.84611	5.32563	5.80515	0.0608067	0.00153111	0.158506	0.0191213
chr17	80562174	80562274	6809074	0	+	0.49	(0.485,0.523]	chr17	687806	160	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	63	2	4.84611	5.32563	5.80515	0.0608067	0.00153111	0.158506	0.0191213
chr10	26834554	26834653	4650040	0	-	0.373737	(0.36,0.39]	chr10	443812	109	INTRON	INTRON	ABI1	ENSG00000136754.18	ENST00000376138.7:ENST00000376166.5:ENST00000376160.5:ENST00000376139.6:ENST00000376142.6:ENST00000359188.8:ENST00000376170.8:ENST00000536334.5:ENST00000490841.6:ENST00000376137.8:ENST00000376140.4:ENST00000346832.10	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.04893	5.325615	5.6023	0.0258522	0.0125348	0.109555	0.0765738
chr1	17677581	17677681	54987	0	+	0.54	(0.523,0.58]	chr1	5603	126	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	214	2	3.69598	5.32557	6.95516	0.00178078	8.30049e-4	0.0262315	0.012496
chr3	172050642	172050742	1627573	0	+	0.5	(0.485,0.523]	chr3	170535	33	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	352	2	5.0834	5.325455	5.56751	0.00113951	2.32773e-5	0.0203945	9.36813e-4
chr12	112972802	112972901	5333080	0	+	0.454545	(0.45,0.485]	chr12	520374	28	UTR3	UTR3:EXON_MRNA	OAS3	ENSG00000111331.14	ENST00000679812.1:ENST00000680090.1:ENST00000681346.1:ENST00000681002.1:ENST00000679505.1:ENST00000680044.1:ENST00000681497.1:ENST00000228928.12:ENST00000679547.1:ENST00000681134.1:ENST00000679517.1:ENST00000681764.1:ENST00000679912.1:ENST00000679354.1:ENST00000680177.1:ENST00000679483.1:ENST00000679493.1:ENST00000679562.1:ENST00000680293.1:ENST00000549918.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	63	2	5.0722	5.3253699999999995	5.57854	0.0230065	0.00988295	0.102982	0.0664239
chr13	33229587	33229687	5684893	0	-	0.45	(0.419,0.45]	chr13	558196	237	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	5.04043	5.3253699999999995	5.61031	0.0625897	0.004032	0.160305	0.0371291
chr19	2440025	2440124	7309586	0	-	0.474747	(0.45,0.485]	chr19	753890	11	INTRON	INTRON	LMNB2	ENSG00000176619.13	ENST00000325327.4	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.0722	5.3253699999999995	5.57854	0.0230065	0.00988295	0.102982	0.0664239
chr2	215954411	215954511	1368827	0	-	0.37	(0.36,0.39]	chr2	145838	69	INTRON	INTRON	MREG	ENSG00000118242.16	ENST00000263268.11:ENST00000620139.4:ENST00000439791.5:ENST00000424992.5:ENST00000420348.1	protein_coding	protein_coding	protein_coding	protein_coding	1	147	2	3.80233	5.32512	6.84791	0.00480386	0.00329741	0.0416515	0.0368376
chr15	85443708	85443808	6176835	0	+	0.37	(0.36,0.39]	chr15	607519	617	INTRON	INTRON	AKAP13	ENSG00000170776.22	ENST00000559362.5:ENST00000394518.7:ENST00000560302.5:ENST00000361243.6:ENST00000560256.1	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.19713	5.32508	5.45303	0.0462258	0.00525731	0.143138	0.044445
chr5	64795973	64796073	2432030	0	+	0.38	(0.36,0.39]	chr5	242360	66	INTRON	INTRON	CWC27	ENSG00000153015.17	ENST00000485990.2:ENST00000685023.1:ENST00000508024.2:ENST00000693640.1:ENST00000693303.1:ENST00000381070.8:ENST00000691921.1:ENST00000688318.1:ENST00000688896.1:ENST00000688107.1:ENST00000692660.1:ENST00000689574.1:ENST00000693660.1:ENST00000687314.1:ENST00000692763.1:ENST00000693121.1:ENST00000689534.1:ENST00000692005.1:ENST00000686041.1:ENST00000607786.2:ENST00000506168.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	62	2	5.19713	5.32508	5.45303	0.0462258	0.00525731	0.143138	0.044445
chr18	5245346	5245445	7004469	0	+	0.474747	(0.45,0.485]	chr18	716088	77	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC00667	ENSG00000263753.9	ENST00000670111.1:ENST00000657250.1:ENST00000582008.6:ENST00000669574.2:ENST00000580082.3:ENST00000662359.1:ENST00000660030.2:ENST00000663393.1:ENST00000666950.1:ENST00000656810.1:ENST00000662932.1:ENST00000658607.1:ENST00000660561.1:ENST00000665541.1:ENST00000657955.1:ENST00000665442.1:ENST00000671289.1:ENST00000670993.1:ENST00000577439.2	lncRNA	lncRNA	lncRNA	lncRNA	0	62	2	5.18438	5.32498	5.46558	0.0273644	0.00773818	0.112372	0.0568726
chr19	23322681	23322780	7358010	0	-	0.474747	(0.45,0.485]	chr19	762771	122	INTRON	INTRON	ZNF91	ENSG00000167232.14	ENST00000596528.1:ENST00000596989.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	62	2	5.18438	5.32498	5.46558	0.0273644	0.00773818	0.112372	0.0568726
chr11	57303675	57303773	5038253	0	-	0.510204	(0.485,0.523]	chr11	488042	3	INTRON	INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	179	2	3.98888	5.3248750000000005	6.66087	0.00309962	7.07662e-4	0.0355173	0.0111742
chr8	124672896	124672996	4064386	0	-	0.42	(0.419,0.45]	chr8	387129	3	SS5_PROX	SS5_PROX:INTRON	MTSS1	ENSG00000170873.19	ENST00000518547.6:ENST00000378017.7:ENST00000325064.9:ENST00000522162.1:ENST00000529463.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	5.20508	5.324775	5.44447	0.0364384	0.00979452	0.128173	0.0664239
chr15	56702926	56703025	6276274	0	-	0.40404	(0.39,0.419]	chr15	618571	13	INTRON	INTRON	ZNF280D	ENSG00000137871.21	ENST00000267807.12:ENST00000559237.5:ENST00000560002.5:ENST00000558002.5:ENST00000558320.5:ENST00000559352.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	62	2	5.24182	5.32477	5.40772	0.0441194	0.00585126	0.140174	0.0474117
chr15	34172760	34172859	6215579	0	-	0.414141	(0.39,0.419]	chr15	611939	63	INTRON	INTRON	KATNBL1	ENSG00000134152.11	ENST00000256544.8:ENST00000560247.5:ENST00000540594.5:ENST00000560671.5:ENST00000557877.5:ENST00000559462.1:ENST00000560108.5:ENST00000559515.1:ENST00000559464.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	64	2	5.04836	5.324655	5.60095	0.0263614	0.0126072	0.110638	0.0768036
chr6	37261946	37262046	2907161	0	+	0.41	(0.39,0.419]	chr6	285363	36	INTRON	INTRON	TBC1D22B	ENSG00000065491.8	ENST00000373491.3	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	5.04836	5.324655	5.60095	0.0263614	0.0126072	0.110638	0.0768036
chr11	112255477	112255577	4942419	0	+	0.49	(0.485,0.523]	chr11	476600	176	INTRON	INTRON	PTS	ENSG00000150787.8	ENST00000531673.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	63	2	5.02573	5.324365	5.623	0.0192139	0.00985879	0.095424900000000007	0.0664239
chr10	22710535	22710635	4647657	0	-	0.55	(0.523,0.58]	chr10	443570	160	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.06957	5.324185	5.5788	0.0448011	0.00262418	0.140478	0.0278348
chrX	1424328	1424428	7965726	0	-	0.53	(0.523,0.58]	chrX	834272	21	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.06957	5.324185	5.5788	0.0448011	0.00262418	0.140478	0.0278348
chr19	15644646	15644741	7215400	0	+	0.484211	(0.45,0.485]	chr19	737139	2	INTRON	INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	68	2	4.74641	5.32404	5.90167	0.0193126	0.0137135	0.0994526	0.0799457
chr10	132554757	132554857	4617008	0	+	0.57	(0.523,0.58]	chr10	441139	162	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.25403	5.323650000000001	5.39327	0.0277354	0.00573579	0.112851	0.0467736
chr3	13025694	13025794	1689393	0	-	0.57	(0.523,0.58]	chr3	176542	32	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	1	133	2	4.1892	5.32335	6.4575	0.0045605	0.00138633	0.0438198	0.0179017
chr17	16310202	16310302	6685753	0	+	0.32	(0.29,0.33]	chr17	670934	99	INTRON	INTRON	PIGL	ENSG00000108474.17	ENST00000581006.5:ENST00000225609.10:ENST00000395844.8:ENST00000498772.6:ENST00000584797.5:ENST00000585034.5:ENST00000477745.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	61	2	5.07676	5.323315	5.56987	0.0412683	0.0029307	0.136301	0.0298918
chr5	74823276	74823376	2692289	0	-	0.37	(0.36,0.39]	chr5	265977	89	INTRON	INTRON	FAM169A	ENSG00000198780.13	ENST00000389156.9:ENST00000510496.5:ENST00000687041.1:ENST00000514215.5:ENST00000510609.5:ENST00000513277.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	62	2	5.14958	5.323	5.49642	0.0493212	0.00476539	0.146207	0.0414441
chr1	43596556	43596654	107416	0	+	0.55102	(0.523,0.58]	chr1	13240	36	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	2	182	2	3.56966	5.322934999999999	7.07621	0.00224097	0.00140655	0.024843	0.0229261
chr20	47257107	47257207	7569885	0	-	0.5	(0.485,0.523]	chr20	791018	73	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	133	2	4.29031	5.322815	6.35532	0.00545609	0.00107516	0.0486984	0.0148869
chr11	35674169	35674269	4841047	0	+	0.5	(0.485,0.523]	chr11	463121	100	INTRON	INTRON	TRIM44	ENSG00000166326.7	ENST00000299413.7	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.06999	5.32261	5.57523	0.0445854	0.00274261	0.140478	0.028553
chrX	65516527	65516623	8055039	0	-	0.489583	(0.485,0.523]	chrX	840752	12	INTRON	INTRON	LAS1L	ENSG00000001497.18	ENST00000677056.1:ENST00000677969.1:ENST00000374811.8:ENST00000374807.9:ENST00000677834.1:ENST00000484069.1:ENST00000374804.9:ENST00000677986.1:ENST00000677087.1:ENST00000679056.1:ENST00000679261.1:ENST00000678074.1:ENST00000678705.1:ENST00000679277.1:ENST00000677154.1:ENST00000678547.1:ENST00000678956.1:ENST00000679116.1:ENST00000678848.1:ENST00000678173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	61	2	5.06999	5.32261	5.57523	0.0445854	0.00274261	0.140478	0.028553
chr16	89221591	89221652	6523477	0	+	0.42623	(0.419,0.45]	chr16	647074	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF778	ENSG00000170100.14	ENST00000433976.7:ENST00000620195.4:ENST00000564906.5:ENST00000567651.5:ENST00000306502.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	65	2	4.81671	5.322595	5.82848	0.08258	0.00242141	0.179396	0.0261589
chr20	3192021	3192121	7515114	0	-	0.55	(0.523,0.58]	chr20	784522	2	SS3_PROX	SS3_PROX:INTRON	DDRGK1	ENSG00000198171.13	ENST00000354488.8:ENST00000470203.1:ENST00000380201.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	354	2	5.19675	5.322455	5.44816	9.11609e-4	3.24837e-5	0.0180377	0.00119455
chr6	158019690	158019790	3059689	0	+	0.59	(0.58,1]	chr6	297373	15	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	4	225	2	3.5894	5.3222949999999996	7.05519	5.81818e-4	4.90964e-4	0.0141176	0.00863136
chr3	58283786	58283886	1485220	0	+	0.44	(0.419,0.45]	chr3	159880	86	INTRON	INTRON	ABHD6	ENSG00000163686.15	ENST00000295962.8:ENST00000478253.6	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	4.85365	5.322265	5.79088	0.022052	0.0197641	0.101502	0.100774
chrX	27342455	27342554	8000272	0	-	0.444444	(0.419,0.45]	chrX	836669	56	INTRON	INTRON	ENSG00000228933	ENSG00000228933.8	ENST00000422048.5:ENST00000669376.1:ENST00000670197.1:ENST00000670482.1	lncRNA	lncRNA	lncRNA	lncRNA	0	67	2	4.85365	5.322265	5.79088	0.022052	0.0197641	0.101502	0.100774
chr22	24102810	24102902	7695391	0	+	0.641304	(0.58,1]	chr22	805525	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CABIN1:ENSG00000232545	ENSG00000099991.18:ENSG00000232545.1	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1:ENST00000444093.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	0	60	2	4.88945	5.322255	5.75506	0.0388928	9.38062e-4	0.131324	0.0135546
chr3	13203825	13203925	1691180	0	-	0.61	(0.58,1]	chr3	176566	393	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.88945	5.322255	5.75506	0.0388928	9.38062e-4	0.131324	0.0135546
chr16	81628588	81628687	6509583	0	+	0.515152	(0.485,0.523]	chr16	645926	65	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.25048	5.3220849999999995	5.39369	0.0275819	0.0059614	0.112782	0.0479866
chr2	218428437	218428523	1033749	0	+	0.488372	(0.485,0.523]	chr2	112239	1	SS5_PROX	SS5_PROX:INTRON	VIL1	ENSG00000127831.11	ENST00000248444.10:ENST00000392114.6:ENST00000440053.1	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.25048	5.3220849999999995	5.39369	0.0275819	0.0059614	0.112782	0.0479866
chr13	32750852	32750951	5566251	0	+	0.40404	(0.39,0.419]	chr13	549221	44	INTRON	INTRON	PDS5B	ENSG00000083642.19	ENST00000315596.15:ENST00000450460.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	62	2	5.14823	5.322045	5.49586	0.0501234	0.00479873	0.147892	0.0416285
chr18	77119721	77119821	7181518	0	-	0.58	(0.523,0.58]	chr18	730186	141	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1:ENST00000583798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	67	2	4.7629	5.32181	5.88072	0.0167014	0.0126258	0.0917029	0.0761905
chr10	61938982	61939082	4490950	0	+	0.48	(0.45,0.485]	chr10	429658	362	INTRON	INTRON	ARID5B	ENSG00000150347.17	ENST00000644638.1:ENST00000681100.1:ENST00000279873.12	protein_coding	protein_coding	protein_coding	protein_coding	1	136	2	4.13561	5.3215	6.50739	0.00482293	0.0017907	0.0453395	0.0213868
chr2	127387351	127387451	1265649	0	-	0.73	(0.58,1]	chr2	136376	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5	protein_coding	protein_coding	protein_coding	protein_coding	6	820	2	5.03918	5.321285	5.60339	9.57866e-5	1.77903e-6	0.00547033	1.53934e-4
chr8	127910907	127911007	3918962	0	+	0.45	(0.419,0.45]	chr8	374216	80	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000521122.2:ENST00000520913.2:ENST00000519481.6:ENST00000651568.1:ENST00000669082.1:ENST00000665166.1:ENST00000656948.1:ENST00000671088.1:ENST00000664924.1:ENST00000670204.1:ENST00000652695.1:ENST00000670602.1:ENST00000651664.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1:ENST00000653406.1	lncRNA	lncRNA	lncRNA	lncRNA	2	196	2	4.15637	5.3212	6.48603	0.00734278	6.54811e-4	0.0570055	0.0105753
chr16	89305000	89305099	6659859	0	-	0.69697	(0.58,1]	chr16	666659	4	SS5_PROX	SS5_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	429	2	4.90058	5.32107	5.74156	8.93566e-4	1.07213e-6	0.017813	1.0926e-4
chr16	29272512	29272612	6433562	0	+	0.55	(0.523,0.58]	chr16	636745	204	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	1	184	2	4.60423	5.320895	6.03756	0.00296812	7.92905e-4	0.0346919	0.0120621
chr7	242202	242302	3306077	0	+	0.6	(0.58,1]	chr7	320161	329	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.00585	5.32064	5.63543	0.0323732	0.00131165	0.121593	0.0171898
chr16	87124244	87124344	6652478	0	-	0.53	(0.523,0.58]	chr16	665579	400	INTRON	INTRON	C16orf95	ENSG00000260456.7	ENST00000562840.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	62	2	4.905	5.320545	5.73609	0.0563605	0.0017613	0.154188	0.0211077
chr2	111474469	111474568	1253387	0	-	0.545455	(0.523,0.58]	chr2	134923	20	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1:ENST00000673878.1:ENST00000439494.1	lncRNA	lncRNA	lncRNA	lncRNA	0	62	2	4.905	5.320545	5.73609	0.0563605	0.0017613	0.154188	0.0211077
chr9	114156610	114156708	4225711	0	+	0.55102	(0.523,0.58]	chr9	400740	2	INTRON	INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.905	5.320545	5.73609	0.0563605	0.0017613	0.154188	0.0211077
chr20	36857976	36858076	7557081	0	-	0.61	(0.58,1]	chr20	789155	182	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	3	415	2	4.65546	5.32052	5.98558	5.5603e-4	2.4481e-6	0.0137234	1.91321e-4
chr7	78941611	78941710	3621407	0	-	0.414141	(0.39,0.419]	chr7	349208	371	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000440555.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	142	2	4.51207	5.31991	6.12775	0.0115883	7.87454e-4	0.0731017	0.0120243
chr13	112912017	112912117	5654736	0	+	0.63	(0.58,1]	chr13	555099	15	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000442625.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	59	2	5.20223	5.319875	5.43752	0.0156166	0.00411607	0.0849828	0.0374453
chr19	33797187	33797287	7241106	0	+	0.69	(0.58,1]	chr19	741453	2	SS5_PROX	SS5_PROX:INTRON	KCTD15	ENSG00000153885.15	ENST00000587658.5:ENST00000587559.5:ENST00000588637.5:ENST00000590771.5:ENST00000284006.10:ENST00000589786.5:ENST00000683859.1:ENST00000588881.5	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.20223	5.319875	5.43752	0.0156166	0.00411607	0.0849828	0.0374453
chr3	111149382	111149482	1532421	0	+	0.37	(0.36,0.39]	chr3	162883	15	INTRON	INTRON	NECTIN3	ENSG00000177707.11	ENST00000493615.5	protein_coding	protein_coding	protein_coding	protein_coding	1	170	2	3.93922	5.3198300000000005	6.70044	0.0125025	2.25359e-4	0.0761905	0.00492301
chr6	15300844	15300944	2857055	0	+	0.42	(0.419,0.45]	chr6	279178	515	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	143	2	4.02619	5.319789999999999	6.61339	0.0059347	0.00294478	0.0506158	0.0300172
chrX	16595057	16595157	7984080	0	-	0.32	(0.29,0.33]	chrX	835302	38	INTRON	INTRON	CTPS2	ENSG00000047230.15	ENST00000359276.9:ENST00000443824.5:ENST00000380241.7	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.91217	5.319655	5.72714	0.0522244	0.00198096	0.148503	0.0229039
chr2	200972308	200972408	989901	0	+	0.37	(0.36,0.39]	chr2	108804	83	INTRON	INTRON	ENSG00000183308	ENSG00000183308.6	ENST00000413848.1:ENST00000332935.6	lncRNA	lncRNA	lncRNA	lncRNA	0	62	2	5.1004	5.319475	5.53855	0.0526991	0.00432809	0.14912	0.0389438
chr10	35466439	35466539	4476978	0	+	0.56	(0.523,0.58]	chr10	428126	106	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	5.08882	5.31947	5.55012	0.0217068	0.00834774	0.100615	0.0598672
chr16	85541871	85541971	6518490	0	+	0.55	(0.523,0.58]	chr16	646391	1826	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.08882	5.31947	5.55012	0.0217068	0.00834774	0.100615	0.0598672
chr12	49372787	49372887	5225221	0	+	0.37	(0.36,0.39]	chr12	507159	11	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549538.5:ENST00000549412.5:ENST00000550643.5:ENST00000548654.5:ENST00000548710.5:ENST00000549179.5:ENST00000548377.5:ENST00000549298.5:ENST00000552918.6:ENST00000549375.5:ENST00000553127.5:ENST00000321898.10:ENST00000551540.5:ENST00000548777.5:ENST00000552171.1:ENST00000547865.5:ENST00000548388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	62	2	5.26508	5.319075	5.37307	0.0361409	0.00795848	0.127853	0.0578938
chr13	32172268	32172367	5562371	0	+	0.383838	(0.36,0.39]	chr13	548646	6	INTRON	INTRON	FRY	ENSG00000073910.23	ENST00000645780.1:ENST00000647500.1:ENST00000642040.1:ENST00000542859.6	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.26508	5.319075	5.37307	0.0361409	0.00795848	0.127853	0.0578938
chr1	9820644	9820744	398173	0	-	0.47	(0.45,0.485]	chr1	45352	469	INTRON	INTRON	CLSTN1	ENSG00000171603.18	ENST00000377298.9:ENST00000650348.1:ENST00000361311.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	61	2	5.16149	5.318985	5.47648	0.0427653	0.0039628	0.13762	0.0368027
chr2	25518501	25518601	1107428	0	-	0.49	(0.485,0.523]	chr2	120876	210	INTRON	INTRON	DTNB	ENSG00000138101.20	ENST00000495466.6:ENST00000496972.6:ENST00000404103.7:ENST00000405222.5:ENST00000407038.7:ENST00000407661.7:ENST00000406818.8:ENST00000398951.6:ENST00000288642.12:ENST00000407186.5:ENST00000356599.9:ENST00000485845.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	62	2	4.90542	5.318965	5.73251	0.0561086	0.00184599	0.154188	0.0217471
chr12	69522182	69522282	5261162	0	+	0.46	(0.45,0.485]	chr12	513023	302	INTRON	INTRON	FRS2	ENSG00000166225.9	ENST00000547219.5:ENST00000550316.5:ENST00000547414.5:ENST00000548154.5:ENST00000549921.6:ENST00000550389.5:ENST00000550937.5:ENST00000549092.5:ENST00000550169.5	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.29973	5.318770000000001	5.33781	0.035042	0.0054758	0.12704	0.0454065
chr4	17628548	17628647	2017163	0	+	0.454545	(0.45,0.485]	chr4	206143	30	UTR3	UTR3:EXON_MRNA	MED28	ENSG00000118579.13	ENST00000237380.12	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.29973	5.318770000000001	5.33781	0.035042	0.0054758	0.12704	0.0454065
chr7	47437713	47437813	3588182	0	-	0.32	(0.29,0.33]	chr7	346104	4	SS3_PROX	SS3_PROX:INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000413551.1	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.07997	5.31867	5.55737	0.0196268	0.00913217	0.095549	0.0632458
chr10	18560965	18561065	4642338	0	-	0.43	(0.419,0.45]	chr10	443321	86	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	4.78575	5.318475	5.8512	0.0224633	0.0201381	0.108193	0.0973365
chr16	23467489	23467589	6568573	0	-	0.47	(0.45,0.485]	chr16	655371	22	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000567339.1:ENST00000568922.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	135	2	4.24796	5.31822	6.38848	0.0059625	0.00132616	0.0506812	0.0173248
chr20	8463345	8463445	7429901	0	+	0.34	(0.33,0.36]	chr20	773698	913	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	62	2	5.00642	5.31813	5.62984	0.0542065	0.00313405	0.151733	0.0312116
chr17	35049225	35049325	6887796	0	-	0.41	(0.39,0.419]	chr17	699061	70	INTRON	INTRON	RFFL	ENSG00000092871.17	ENST00000315249.11:ENST00000394597.7:ENST00000584655.5:ENST00000447669.6:ENST00000584541.1:ENST00000414419.6:ENST00000581265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	62	2	5.26451	5.318115	5.37172	0.0367885	0.00800901	0.129052	0.0580954
chr14	68898585	68898684	5999325	0	-	0.575758	(0.523,0.58]	chr14	588704	45	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	481	2	4.74572	5.31809	5.89046	9.1727e-4	7.7918e-6	0.0180726	4.31312e-4
chr2	73853238	73853337	833286	0	+	0.414141	(0.39,0.419]	chr2	94131	3	UTR3	UTR3:EXON_MRNA:INTRON	STAMBP	ENSG00000124356.17	ENST00000339566.7:ENST00000684095.1:ENST00000682847.1:ENST00000683317.1:ENST00000683036.1:ENST00000682157.1:ENST00000683349.1:ENST00000684337.1:ENST00000683247.1:ENST00000682683.1:ENST00000682329.1:ENST00000683149.1:ENST00000682851.1:ENST00000394070.7:ENST00000683728.1:ENST00000409707.6:ENST00000683518.1:ENST00000684585.1:ENST00000683434.1:ENST00000682352.1:ENST00000684697.1:ENST00000682592.1:ENST00000683718.1:ENST00000682423.1:ENST00000478946.2:ENST00000684200.1:ENST00000684355.1:ENST00000684774.1:ENST00000536064.2:ENST00000683465.1:ENST00000684716.1:ENST00000683016.1:ENST00000684174.1:ENST00000684703.1:ENST00000682799.1:ENST00000682998.1:ENST00000682379.1:ENST00000684312.1:ENST00000683852.1:ENST00000684321.1:ENST00000394073.6:ENST00000684671.1:ENST00000682848.1:ENST00000683877.1:ENST00000683530.1:ENST00000683027.1:ENST00000683304.1:ENST00000682784.1:ENST00000683205.1:ENST00000682351.1:ENST00000683818.1:ENST00000684426.1:ENST00000683582.1:ENST00000683417.1:ENST00000683594.1:ENST00000682387.1:ENST00000682747.1:ENST00000682105.1:ENST00000683928.1:ENST00000683391.1:ENST00000684758.1:ENST00000682558.1:ENST00000683902.1:ENST00000432295.7:ENST00000486458.2:ENST00000683314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	63	2	4.9406	5.31789	5.69518	0.0658437	0.00302238	0.162385	0.0305643
chr22	48695672	48695771	7751224	0	+	0.616162	(0.58,1]	chr22	812283	19	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	71	2	4.49116	5.317715	6.14427	0.0207449	0.00407804	0.102713	0.0413652
chr3	126922629	126922728	1558723	0	+	0.464646	(0.45,0.485]	chr3	164901	75	INTRON	INTRON	CHCHD6	ENSG00000159685.11	ENST00000290913.8:ENST00000503119.5:ENST00000508789.5:ENST00000514908.5:ENST00000513253.1:ENST00000515867.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	62	2	4.9538	5.3176749999999995	5.68155	0.0569772	0.00241241	0.154343	0.0261086
chr10	79176215	79176315	4533119	0	+	0.55	(0.523,0.58]	chr10	432438	137	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.20104	5.317575	5.43411	0.026041	0.00648051	0.109673	0.0503748
chr21	29047821	29047908	7602498	0	+	0.218391	[0,0.29]	chr21	794359	1	INTRON	INTRON	USP16	ENSG00000156256.15	ENST00000399975.7:ENST00000334352.8:ENST00000474835.5:ENST00000399976.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	60	2	4.99924	5.31754	5.63584	0.0347661	0.00193639	0.126529	0.0225083
chr6	30551769	30551867	3117087	0	-	0.285714	[0,0.29]	chr6	302417	39	INTRON	INTRON	GNL1	ENSG00000204590.13	ENST00000376621.8:ENST00000462708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	60	2	4.99924	5.31754	5.63584	0.0347661	0.00193639	0.126529	0.0225083
chr17	60645602	60645702	6770741	0	+	0.25	[0,0.29]	chr17	683045	113	INTRON	INTRON	PPM1D	ENSG00000170836.13	ENST00000305921.8:ENST00000693102.1:ENST00000685212.1:ENST00000693196.1:ENST00000392995.7:ENST00000688505.1:ENST00000629650.3:ENST00000687355.1:ENST00000686064.1:ENST00000689445.1:ENST00000692386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	61	2	4.88286	5.317525	5.75219	0.041613	0.00142668	0.136301	0.0182112
chr1	5949243	5949342	387336	0	-	0.383838	(0.36,0.39]	chr1	44483	6	INTRON	INTRON	NPHP4	ENSG00000131697.18	ENST00000378156.9:ENST00000478423.6:ENST00000489180.6:ENST00000378169.7:ENST00000622020.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	65	2	4.7639	5.31737	5.87084	0.0811309	0.00196738	0.177951	0.022768300000000002
chr17	55320976	55321074	6757679	0	+	0.479592	(0.45,0.485]	chr17	681735	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000575307.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	848	2	5.17474	5.317095	5.45945	2.86047e-4	8.95212e-6	0.00961195	4.75569e-4
chr10	79175915	79176015	4533116	0	+	0.41	(0.39,0.419]	chr10	432438	134	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	5.10551	5.31701	5.52851	0.029339	0.0112089	0.116079	0.071709
chr9	123257445	123257545	4396237	0	-	0.41	(0.39,0.419]	chr9	419553	201	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	63	2	5.10551	5.31701	5.52851	0.029339	0.0112089	0.116079	0.071709
chr17	29130982	29131082	6876472	0	-	0.54	(0.523,0.58]	chr17	697995	2	SS5_PROX	SS5_PROX:INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000590242.5:ENST00000528564.2:ENST00000528322.6:ENST00000585573.6:ENST00000533420.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	137	2	3.90605	5.31687	6.72769	0.00295607	0.00275419	0.0332418	0.0300958
chr12	106957449	106957549	5320079	0	+	0.29	[0,0.29]	chr12	518156	3	SS5_PROX	SS5_PROX:INTRON	TMEM263	ENSG00000151135.10	ENST00000548125.5:ENST00000547242.5:ENST00000551489.5:ENST00000550344.5:ENST00000280756.9:ENST00000547081.1	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.16198	5.3168500000000005	5.47172	0.0158465	0.00622515	0.0859576	0.0496245
chr15	55836325	55836421	6272305	0	-	0.46875	(0.45,0.485]	chr15	618219	17	INTRON	INTRON	NEDD4	ENSG00000069869.17	ENST00000435532.8:ENST00000338963.6:ENST00000508342.5:ENST00000503468.5:ENST00000508871.5:ENST00000648451.1:ENST00000506154.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	62	2	5.12938	5.316800000000001	5.50422	0.0257993	0.00873194	0.109555	0.0612699
chr4	67804118	67804218	2050564	0	+	0.47	(0.45,0.485]	chr4	209734	13	INTRON	INTRON	UBA6-DT	ENSG00000248049.8	ENST00000500538.7:ENST00000667140.1:ENST00000663060.1	lncRNA	lncRNA	lncRNA	lncRNA	0	62	2	5.12938	5.316800000000001	5.50422	0.0257993	0.00873194	0.109555	0.0612699
chr11	65444042	65444142	4871782	0	+	0.56	(0.523,0.58]	chr11	468177	214	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	83	12277	2	5.29304	5.316725	5.34041	5.22444e-5	3.68492e-7	0.00401507	5.44299e-5
chr11	77621267	77621365	5083641	0	-	0.44898	(0.419,0.45]	chr11	494663	12	INTRON	INTRON	CLNS1A	ENSG00000074201.9	ENST00000525428.6:ENST00000525064.5:ENST00000263309.7:ENST00000526009.5:ENST00000532069.5:ENST00000528364.1:ENST00000527299.1:ENST00000527133.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	62	2	5.23407	5.316705	5.39934	0.0486006	0.00646489	0.145074	0.0503748
chr22	42988230	42988330	7824015	0	-	0.47	(0.45,0.485]	chr22	820626	285	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	189	2	4.2865	5.316525	6.34655	0.00642055	3.33325e-4	0.0529785	0.00654056
chr1	51772923	51773023	124157	0	+	0.4	(0.39,0.419]	chr1	15440	2	SS5_PROX	SS5_PROX:INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000531828.5:ENST00000361556.9:ENST00000462759.5:ENST00000486942.5:ENST00000528603.5:ENST00000475697.5:ENST00000531061.1:ENST00000531819.5:ENST00000533825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	66	2	4.69798	5.31637	5.93476	0.088901	0.00169249	0.183874	0.0204799
chr1	31025395	31025495	435556	0	-	0.44	(0.419,0.45]	chr1	51564	179	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	62	2	5.18804	5.316055	5.44407	0.051668	0.00585948	0.148503	0.0474117
chr1	203696858	203696958	320825	0	+	0.44	(0.419,0.45]	chr1	36012	131	INTRON	INTRON	ATP2B4	ENSG00000058668.15	ENST00000367218.7:ENST00000357681.10:ENST00000341360.6	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.18804	5.316055	5.44407	0.051668	0.00585948	0.148503	0.0474117
chr16	57377754	57377852	6466042	0	+	0.428571	(0.419,0.45]	chr16	641366	9	UTR5	UTR5:EXON_MRNA:INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1:ENST00000565912.1	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.27868	5.315925	5.35317	0.0457732	0.00714797	0.142336	0.0541241
chr13	32171670	32171770	5562365	0	+	0.47	(0.45,0.485]	chr13	548645	4	SS5_PROX	SS5_PROX:INTRON	FRY	ENSG00000073910.23	ENST00000645780.1:ENST00000647500.1:ENST00000642040.1:ENST00000542859.6	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.28846	5.315735	5.34301	0.0328801	0.00612862	0.122593	0.0489549
chr16	12260643	12260743	6392475	0	+	0.6	(0.58,1]	chr16	631965	606	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	1	128	2	4.79756	5.315655	5.83375	0.00751249	1.46952e-4	0.0576451	0.00363207
chr12	111596249	111596348	5500367	0	-	0.222222	[0,0.29]	chr12	541405	315	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	150	2	3.76569	5.315205000000001	6.86472	0.0104848	5.62638e-5	0.0690475	0.00178963
chr3	71422857	71422957	1829677	0	-	0.45	(0.419,0.45]	chr3	188242	622	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000649145.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	141	2	4.22247	5.31517	6.40787	0.00835435	0.0018006	0.0613588	0.0214959
chr20	62922256	62922355	7585557	0	-	0.545455	(0.523,0.58]	chr20	792927	75	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8	protein_coding	protein_coding	protein_coding	protein_coding	3	218	2	3.28404	5.315045	7.34605	0.00265771	8.24125e-4	0.028016	0.0170688
chr16	85234265	85234365	6515411	0	+	0.53	(0.523,0.58]	chr16	646377	65	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	70	2	4.60868	5.315025	6.02137	0.0226775	0.00992924	0.108193	0.0671959
chr17	4852319	4852419	6672076	0	+	0.41	(0.39,0.419]	chr17	668609	183	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	65	2	4.92679	5.3149999999999995	5.70321	0.0226065	0.0160946	0.102982	0.0896852
chr2	24798192	24798291	729859	0	+	0.373737	(0.36,0.39]	chr2	85137	39	INTRON	INTRON	CENPO	ENSG00000138092.11	ENST00000473476.5:ENST00000473706.5:ENST00000491031.5:ENST00000380834.7:ENST00000486527.6:ENST00000260662.2:ENST00000498362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	64	2	4.82572	5.314525	5.80333	0.0751666	0.00231859	0.172839	0.0255753
chr10	28551745	28551845	4469602	0	+	0.33	(0.29,0.33]	chr10	427649	133	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	135	2	4.01338	5.31429	6.6152	0.00297819	0.0023513	0.0347831	0.0258525
chr16	30315028	30315128	6578097	0	-	0.43	(0.419,0.45]	chr16	657488	87	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	62	2	5.1405	5.31398	5.48746	0.0550015	0.00532156	0.153337	0.0446153
chr6	158774707	158774807	3299406	0	-	0.43	(0.419,0.45]	chr6	319393	29	INTRON	INTRON	EZR	ENSG00000092820.19	ENST00000337147.11:ENST00000367075.4	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.1405	5.31398	5.48746	0.0550015	0.00532156	0.153337	0.0446153
chr7	67211126	67211226	3386146	0	+	0.45	(0.419,0.45]	chr7	326613	154	INTRON	INTRON	TYW1	ENSG00000198874.14	ENST00000359626.10:ENST00000361660.8:ENST00000495971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	62	2	5.1405	5.31398	5.48746	0.0550015	0.00532156	0.153337	0.0446153
chr11	14465030	14465130	4999731	0	-	0.38	(0.36,0.39]	chr11	483800	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.214	5.31395	5.4139	0.0340874	0.00887999	0.125059	0.0618231
chr3	57017019	57017118	1789035	0	-	0.434343	(0.419,0.45]	chr3	186479	93	INTRON	INTRON	ARHGEF3	ENSG00000163947.12	ENST00000338458.8:ENST00000468727.5:ENST00000477833.5:ENST00000477440.6:ENST00000468466.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	62	2	5.30548	5.313715	5.32195	0.0431627	0.00792071	0.138403	0.057762
chr2	190741819	190741919	1346831	0	-	0.51	(0.485,0.523]	chr2	142884	21	INTRON	INTRON	ENSG00000228509	ENSG00000228509.7	ENST00000676095.1:ENST00000676386.1:ENST00000691949.1	lncRNA	lncRNA	lncRNA	lncRNA	0	64	2	4.71964	5.313665	5.90769	0.0718646	0.0011708	0.168159	0.0157899
chr1	44245950	44246050	459632	0	-	0.4	(0.39,0.419]	chr1	55307	35	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	62	2	5.04815	5.313535	5.57892	0.0572698	0.00396694	0.154343	0.0368027
chr2	233176764	233176864	1058401	0	+	0.47	(0.45,0.485]	chr2	115145	1	SS3_PROX	SS3_PROX:INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493632.5:ENST00000465281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	171	2	4.25873	5.31345	6.36817	0.00628767	3.97249e-4	0.0523832	0.00741985
chr2	186625587	186625687	972694	0	+	0.42	(0.419,0.45]	chr2	106863	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ITGAV	ENSG00000138448.12	ENST00000261023.8:ENST00000374907.7:ENST00000433736.6	protein_coding	protein_coding	protein_coding	protein_coding	1	143	2	3.97869	5.313245	6.6478	0.00559992	0.00330911	0.0493906	0.0324356
chr5	21357054	21357154	2391132	0	+	0.41	(0.39,0.419]	chr5	239002	147	INTRON	INTRON	GUSBP1	ENSG00000183666.18	ENST00000508260.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	62	2	5.21344	5.31299	5.41254	0.0347088	0.00893514	0.12648	0.0620271
chr8	33452719	33452818	3964772	0	-	0.393939	(0.39,0.419]	chr8	378778	11	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	FUT10	ENSG00000172728.16	ENST00000327671.10:ENST00000518672.5:ENST00000524021.1:ENST00000520767.5:ENST00000518076.1:ENST00000416169.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	62	2	5.21344	5.31299	5.41254	0.0347088	0.00893514	0.12648	0.0620271
chr2	55228404	55228504	1149749	0	-	0.31	(0.29,0.33]	chr2	125615	2	SS3_PROX	SS3_PROX:INTRON	CLHC1	ENSG00000162994.16	ENST00000401408.6:ENST00000428621.5:ENST00000494539.5:ENST00000407122.5:ENST00000406076.5:ENST00000487320.5:ENST00000466020.1:ENST00000451916.1:ENST00000464243.1:ENST00000463300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	63	2	4.79099	5.31288	5.83477	0.061706	0.00150459	0.158854	0.0188758
chr13	50947292	50947389	5602113	0	+	0.278351	[0,0.29]	chr13	551847	14	INTRON	INTRON	RNASEH2B	ENSG00000136104.21	ENST00000422660.6:ENST00000646731.1:ENST00000645188.1:ENST00000643774.1:ENST00000646279.1:ENST00000646960.1:ENST00000336617.8:ENST00000644297.1:ENST00000644034.1:ENST00000645955.1:ENST00000643682.1:ENST00000644518.1:ENST00000642721.1:ENST00000616907.2:ENST00000644420.1:ENST00000645990.1:ENST00000642995.1:ENST00000646092.1:ENST00000644183.1:ENST00000644425.1:ENST00000643159.1:ENST00000645618.1:ENST00000611510.5:ENST00000642454.1:ENST00000646709.1:ENST00000647387.1:ENST00000645712.1:ENST00000645333.1:ENST00000643215.1:ENST00000495244.7:ENST00000642207.1:ENST00000645370.1:ENST00000459681.3:ENST00000646339.1:ENST00000646964.1:ENST00000643405.1:ENST00000613449.4:ENST00000621641.1:ENST00000643529.1:ENST00000645201.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	59	2	5.20713	5.312705	5.41828	0.0248721	0.00336232	0.10758	0.0328612
chr12	111483331	111483426	5499214	0	-	0.284211	[0,0.29]	chr12	541308	1	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000643474.1:ENST00000643694.1:ENST00000645162.1:ENST00000551755.6:ENST00000644883.1:ENST00000647305.1:ENST00000495342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	59	2	5.25474	5.312635	5.37053	0.02298	0.00378192	0.102982	0.0354402
chr2	239340788	239340888	1392118	0	-	0.6	(0.58,1]	chr2	148752	163	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	61	2	4.95814	5.3125599999999995	5.66698	0.0102927	0.0074469	0.0684871	0.0553519
chr14	104874955	104875055	5925961	0	+	0.63	(0.58,1]	chr14	579942	60	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	4.62403	5.31241	6.00079	0.0578275	4.59827e-4	0.154343	0.00821903
chr6	170397075	170397174	3076550	0	+	0.666667	(0.58,1]	chr6	299192	11	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	4.62403	5.31241	6.00079	0.0578275	4.59827e-4	0.154343	0.00821903
chr1	43598073	43598165	107433	0	+	0.608696	(0.58,1]	chr1	13245	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5:ENST00000496447.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	5.21377	5.312355	5.41094	0.0230012	0.00240622	0.102982	0.0261006
chr7	2041018	2041118	3530642	0	-	0.61	(0.58,1]	chr7	340995	260	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	5.21377	5.312355	5.41094	0.0230012	0.00240622	0.102982	0.0261006
chr14	89468384	89468484	6028794	0	-	0.53	(0.523,0.58]	chr14	591484	513	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000555353.5:ENST00000555855.5:ENST00000555034.5:ENST00000553904.1	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	4.96714	5.312315	5.65749	0.0182707	0.0108948	0.0921579	0.0706366
chr16	85376041	85376141	6516831	0	+	0.58	(0.523,0.58]	chr16	646391	167	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	4.96714	5.312315	5.65749	0.0182707	0.0108948	0.0921579	0.0706366
chr16	89430755	89430855	6661141	0	-	0.39	(0.36,0.39]	chr16	666748	1	SS5_PROX	SS5_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	143	2	4.59672	5.31213	6.02754	0.0133452	6.23025e-4	0.0789398	0.0101764
chr11	70802133	70802232	5062304	0	-	0.515152	(0.485,0.523]	chr11	492707	32	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5:ENST00000460048.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	4.8987	5.311999999999999	5.7253	0.0162644	0.0129327	0.0873195	0.0778105
chr20	4991209	4991309	7518473	0	-	0.51	(0.485,0.523]	chr20	784906	199	INTRON	INTRON	SLC23A2	ENSG00000089057.15	ENST00000379333.5:ENST00000338244.6:ENST00000468355.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	4.8987	5.311999999999999	5.7253	0.0162644	0.0129327	0.0873195	0.0778105
chr10	18573156	18573256	4642460	0	-	0.45	(0.419,0.45]	chr10	443321	208	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	2	240	2	3.60215	5.31188	7.02161	0.0117571	1.07601e-4	0.0737098	0.00289045
chr18	77033476	77033576	7180649	0	-	0.43	(0.419,0.45]	chr18	730157	158	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000580402.5:ENST00000580473.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000495162.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	69	2	4.7145	5.311795	5.90909	0.0256236	0.0184411	0.115966	0.0927235
chr11	70762668	70762768	5061908	0	-	0.58	(0.523,0.58]	chr11	492701	448	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	65	2	4.83424	5.31174	5.78924	0.0147166	0.0144272	0.0833845	0.0826843
chr7	76998616	76998715	3398786	0	+	0.555556	(0.523,0.58]	chr7	328286	79	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	65	2	4.83424	5.31174	5.78924	0.0147166	0.0144272	0.0833845	0.0826843
chr17	38704647	38704747	6729104	0	+	0.47	(0.45,0.485]	chr17	676275	23	EXON_LNCRNA	EXON_LNCRNA	ENSG00000277969	ENSG00000277969.1	ENST00000612330.1	lncRNA	lncRNA	lncRNA	lncRNA	0	61	2	5.06138	5.311705	5.56203	0.0492008	0.00322991	0.146142	0.0319521
chr1	19115131	19115214	409091	0	-	0.60241	(0.58,1]	chr1	47513	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000375218.3	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.14497	5.31168	5.47839	0.0145198	0.00474658	0.0823104	0.0413976
chr1	1025946	1026046	974	0	+	0.63	(0.58,1]	chr1	166	31	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.26138	5.3114550000000005	5.36153	0.021217	0.00273899	0.0996078	0.028553
chr15	34408035	34408135	6217538	0	-	0.62	(0.58,1]	chr15	612286	3	SS3_PROX	SS3_PROX:INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000569781.1:ENST00000565885.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	5.26138	5.3114550000000005	5.36153	0.021217	0.00273899	0.0996078	0.028553
chr7	211770	211870	3305772	0	+	0.68	(0.58,1]	chr7	320161	24	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.26138	5.3114550000000005	5.36153	0.021217	0.00273899	0.0996078	0.028553
chr10	18558766	18558866	4642316	0	-	0.39	(0.36,0.39]	chr10	443321	64	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	4.64834	5.311145	5.97395	0.0272056	0.0145438	0.119337	0.0823572
chr11	18012101	18012201	5015380	0	-	0.52	(0.485,0.523]	chr11	484705	2	SS5_PROX	SS5_PROX:INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528200.5:ENST00000532265.5:ENST00000529728.5:ENST00000530613.5:ENST00000532389.5:ENST00000530925.5:ENST00000533328.5:ENST00000532212.5:ENST00000524716.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	161	2	4.02059	5.310995	6.6014	0.0088843599999999991	1.68998e-4	0.0635397	0.0040111
chr2	160464129	160464229	1293192	0	-	0.48	(0.45,0.485]	chr2	138809	313	INTRON	INTRON	RBMS1	ENSG00000153250.21	ENST00000348849.8:ENST00000474820.5:ENST00000491781.5:ENST00000477486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	163	2	3.84298	5.310905	6.77883	0.0131965	1.23522e-4	0.0785449	0.00321265
chr2	665940	666039	1079804	0	-	0.535354	(0.523,0.58]	chr2	117536	22	UTR3	UTR3:EXON_MRNA	TMEM18	ENSG00000151353.15	ENST00000281017.8	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.96197	5.310779999999999	5.65959	0.0521137	0.0021416	0.148503	0.0240825
chr5	145800238	145800338	2783462	0	-	0.5	(0.485,0.523]	chr5	272856	33	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000683046.1:ENST00000334744.8:ENST00000394450.6:ENST00000505416.5:ENST00000511435.1	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	4.96361	5.31076	5.65791	0.0181582	0.0112713	0.0921579	0.071709
chr16	89307039	89307138	6659882	0	-	0.656566	(0.58,1]	chr16	666665	13	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1:ENST00000647539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	488	2	5.19554	5.310565	5.42559	2.6607e-4	3.23011e-6	0.0092474	2.31633e-4
chr15	61986099	61986199	6293260	0	-	0.44	(0.419,0.45]	chr15	619961	7	INTRON	INTRON	VPS13C	ENSG00000129003.19	ENST00000249837.7:ENST00000644861.2:ENST00000645819.1:ENST00000395898.3:ENST00000561258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	62	2	5.09133	5.31046	5.52959	0.0586308	0.00484244	0.155565	0.0418176
chr18	13591334	13591433	7026506	0	+	0.383838	(0.36,0.39]	chr18	717646	55	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000677744.1:ENST00000593236.1:ENST00000678400.1:ENST00000586207.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	77	2	4.39677	5.310385	6.224	0.0422707	0.00967792	0.149195	0.0661428
chr7	158919851	158919947	3523189	0	+	0.645833	(0.58,1]	chr7	340299	6	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	63	2	4.81862	5.3102599999999995	5.8019	0.0102696	0.007984	0.0678072	0.0596361
chr13	113610495	113610595	5659105	0	+	0.63	(0.58,1]	chr13	555776	1	SS3_PROX	SS3_PROX:INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	60	2	4.82753	5.310180000000001	5.79283	0.0427798	8.4246e-4	0.13762	0.0125912
chr7	1938193	1938292	3529606	0	-	0.69697	(0.58,1]	chr7	340962	9	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000450235.5:ENST00000437877.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	197	2	3.43352	5.310155	7.18679	0.00815854	1.00244e-5	0.0605492	5.13591e-4
chr1	75669656	75669756	512841	0	-	0.42	(0.419,0.45]	chr1	60664	268	INTRON	INTRON	ENSG00000230863	ENSG00000230863.3	ENST00000648424.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	62	2	5.25615	5.31005	5.36395	0.0407485	0.00879729	0.135868	0.0615125
chr2	3289612	3289712	1081003	0	-	0.54	(0.523,0.58]	chr2	117633	69	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	60	2	5.21727	5.309760000000001	5.40225	0.0361597	0.00404292	0.127853	0.0371291
chr20	25549680	25549780	7540458	0	-	0.57	(0.523,0.58]	chr20	787074	227	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.21727	5.309760000000001	5.40225	0.0361597	0.00404292	0.127853	0.0371291
chr3	61250006	61250105	1806118	0	-	0.535354	(0.523,0.58]	chr3	186858	55	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5:ENST00000490952.1:ENST00000465330.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	60	2	5.21727	5.309760000000001	5.40225	0.0361597	0.00404292	0.127853	0.0371291
chr9	137836325	137836424	4266710	0	+	0.575758	(0.523,0.58]	chr9	407557	3	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462942.3	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	60	2	5.21727	5.309760000000001	5.40225	0.0361597	0.00404292	0.127853	0.0371291
chr13	97368850	97368950	5632280	0	+	0.32	(0.29,0.33]	chr13	553226	19	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000449284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	136	2	4.61778	5.309695	6.00161	0.00923185	4.44335e-4	0.0644666	0.00805861
chr22	42648602	42648698	7821318	0	-	0.614583	(0.58,1]	chr22	820391	17	INTRON	INTRON	CYB5R3	ENSG00000100243.22	ENST00000693367.1:ENST00000352397.10:ENST00000361740.9:ENST00000692152.1:ENST00000693363.1:ENST00000689795.1:ENST00000686523.1:ENST00000407332.6:ENST00000687183.1:ENST00000691295.1:ENST00000690835.1:ENST00000689195.1:ENST00000688244.1:ENST00000690993.1:ENST00000689239.1:ENST00000692344.1:ENST00000686129.1:ENST00000466276.2:ENST00000693716.1:ENST00000688004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	68	2	4.58025	5.30959	6.03893	0.0172566	0.00503456	0.0923809	0.0464858
chr5	1105296	1105396	2608904	0	-	0.65	(0.58,1]	chr5	259667	107	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	4.66416	5.30935	5.95454	0.0144381	0.0059453	0.0833845	0.0506158
chr15	99334329	99334429	6197755	0	+	0.36	(0.33,0.36]	chr15	609907	2	SS5_PROX	SS5_PROX:INTRON	LRRC28	ENSG00000168904.15	ENST00000558879.5:ENST00000559433.5:ENST00000558471.5:ENST00000301981.8:ENST00000447360.6:ENST00000558172.5:ENST00000561276.5:ENST00000331450.9:ENST00000558771.1:ENST00000558248.5:ENST00000558890.5:ENST00000559819.5:ENST00000559774.6:ENST00000558911.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	62	2	5.11654	5.309285	5.50203	0.0265895	0.00998589	0.111433	0.0667545
chr11	120212201	120212297	4950881	0	+	0.583333	(0.58,1]	chr11	478299	3	INTRON	INTRON	OAF	ENSG00000184232.9	ENST00000328965.9:ENST00000531220.1	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.11355	5.30926	5.50497	0.0271806	0.00187297	0.112113	0.0219434
chr6	97245778	97245878	3207019	0	-	0.35	(0.33,0.36]	chr6	311339	114	INTRON	INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6:ENST00000509383.5:ENST00000510018.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	66	2	4.64131	5.30922	5.97713	0.0867669	0.00133012	0.182221	0.0173248
chrX	65515473	65515568	8055028	0	-	0.505263	(0.485,0.523]	chrX	840752	1	INTRON	INTRON	LAS1L	ENSG00000001497.18	ENST00000677056.1:ENST00000677969.1:ENST00000374811.8:ENST00000374807.9:ENST00000677834.1:ENST00000484069.1:ENST00000374804.9:ENST00000677986.1:ENST00000677087.1:ENST00000679056.1:ENST00000679261.1:ENST00000678074.1:ENST00000678705.1:ENST00000679277.1:ENST00000677154.1:ENST00000678547.1:ENST00000678956.1:ENST00000679116.1:ENST00000678848.1:ENST00000678173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	61	2	4.96239	5.309200000000001	5.65601	0.0518747	0.00224147	0.148503	0.024843
chr2	147986772	147986872	1279751	0	-	0.33	(0.29,0.33]	chr2	137804	43	INTRON	INTRON	ORC4	ENSG00000115947.14	ENST00000392857.10:ENST00000264169.6:ENST00000536575.5:ENST00000535373.5:ENST00000540442.5:ENST00000461711.5:ENST00000490200.5:ENST00000416719.5:ENST00000457954.5:ENST00000440042.1:ENST00000495601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	61	2	5.13716	5.309115	5.48107	0.0222022	0.00805226	0.101857	0.0582806
chr11	47229420	47229519	4854869	0	+	0.535354	(0.523,0.58]	chr11	464536	120	INTRON	INTRON	DDB2	ENSG00000134574.12	ENST00000614825.4:ENST00000256996.9:ENST00000378601.7:ENST00000622090.4:ENST00000610805.4:ENST00000612309.4:ENST00000617022.4:ENST00000616278.4:ENST00000378600.7:ENST00000378603.7:ENST00000617847.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	60	2	5.16969	5.30907	5.44845	0.0387762	0.00361636	0.131324	0.0342681
chr1	27344964	27345056	71355	0	+	0.543478	(0.523,0.58]	chr1	8039	2	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	SYTL1	ENSG00000142765.18	ENST00000618673.4:ENST00000318074.9:ENST00000616558.5:ENST00000483926.5:ENST00000473280.1:ENST00000543823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	60	2	5.26332	5.3089200000000005	5.35452	0.0337698	0.00453096	0.124319	0.0400651
chr19	58327514	58327614	7301071	0	+	0.54	(0.523,0.58]	chr19	752037	4	SS5_PROX	SS5_PROX:INTRON	ZSCAN22	ENSG00000182318.6	ENST00000329665.5	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.26332	5.3089200000000005	5.35452	0.0337698	0.00453096	0.124319	0.0400651
chrX	1596032	1596130	7830204	0	+	0.642857	(0.58,1]	chrX	822080	1	INTRON	INTRON	AKAP17A	ENSG00000197976.12	ENST00000313871.9:ENST00000474361.6:ENST00000381261.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	58	2	5.30747	5.308915000000001	5.31036	0.0196049	0.00312721	0.0955413	0.0311915
chr7	76996331	76996431	3398763	0	+	0.63	(0.58,1]	chr7	328286	56	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	60	2	5.02314	5.3088049999999996	5.59447	0.0117666	0.00638322	0.0737098	0.0501889
chr17	59784059	59784159	6768728	0	+	0.42	(0.419,0.45]	chr17	682833	98	INTRON	INTRON	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592619.5:ENST00000591877.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	541	2	4.78623	5.308615	5.831	0.00141815	2.02232e-5	0.0230241	8.47617e-4
chr20	35393410	35393500	7553381	0	-	0.355556	(0.33,0.36]	chr20	788559	8	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000443429.5:ENST00000438533.5:ENST00000397554.5:ENST00000491125.5:ENST00000491040.5:ENST00000397553.6:ENST00000495752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	61	2	5.11012	5.308540000000001	5.50696	0.04702	0.00418696	0.143232	0.0379935
chr1	44241314	44241414	459584	0	-	0.6	(0.58,1]	chr1	55299	86	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	303	2	4.86045	5.30847	5.75649	9.78301e-4	5.56285e-6	0.0187475	3.40678e-4
chr17	15460671	15460771	6860041	0	-	0.5	(0.485,0.523]	chr17	695067	72	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	61	2	5.14248	5.308365	5.47425	0.0243396	0.00761903	0.106588	0.0561937
chrX	123870881	123870980	7946389	0	+	0.50505	(0.485,0.523]	chrX	831426	100	INTRON	INTRON	XIAP	ENSG00000101966.13	ENST00000422098.5:ENST00000481776.5:ENST00000434753.7:ENST00000497906.5:ENST00000468691.5:ENST00000430625.1:ENST00000371199.8:ENST00000497640.1:ENST00000355640.3:ENST00000468503.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	5.14248	5.308365	5.47425	0.0243396	0.00761903	0.106588	0.0561937
chr1	174336775	174336875	279766	0	+	0.34	(0.33,0.36]	chr1	32701	313	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1:ENST00000367690.5	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.27557	5.3081949999999996	5.34082	0.0338211	0.00707628	0.124319	0.0540197
chrX	119005620	119005720	7943850	0	+	0.36	(0.33,0.36]	chrX	831163	1	SS3_PROX	SS3_PROX:INTRON	LONRF3	ENSG00000175556.17	ENST00000304778.11:ENST00000371628.8:ENST00000481285.5:ENST00000439603.5:ENST00000422289.3:ENST00000472173.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	61	2	5.27557	5.3081949999999996	5.34082	0.0338211	0.00707628	0.124319	0.0540197
chr2	72968247	72968347	1188475	0	-	0.49	(0.485,0.523]	chr2	128799	4	SS5_PROX	SS5_PROX:INTRON	SFXN5	ENSG00000144040.13	ENST00000272433.7:ENST00000461352.5:ENST00000474528.5:ENST00000495208.5:ENST00000482289.5:ENST00000490056.5:ENST00000411783.5:ENST00000410065.5:ENST00000482542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	5.21769	5.30819	5.39869	0.0359739	0.00421243	0.127853	0.0380601
chrX	51868655	51868755	7882280	0	+	0.49	(0.485,0.523]	chrX	826505	652	INTRON	INTRON	MAGED1	ENSG00000179222.18	ENST00000375772.7	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.21769	5.30819	5.39869	0.0359739	0.00421243	0.127853	0.0380601
chr10	131919086	131919186	4616207	0	+	0.56	(0.523,0.58]	chr10	441069	61	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	62	2	5.02927	5.308035	5.5868	0.020474	0.0095202	0.0979776	0.0650078
chr19	38679623	38679723	7258160	0	+	0.58	(0.523,0.58]	chr19	743980	310	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	62	2	5.02927	5.308035	5.5868	0.020474	0.0095202	0.0979776	0.0650078
chr4	4548245	4548343	2006777	0	+	0.571429	(0.523,0.58]	chr4	204900	30	INTRON	INTRON	STX18-AS1	ENSG00000247708.8	ENST00000664571.1:ENST00000670162.1:ENST00000656969.1:ENST00000664283.1:ENST00000507244.6:ENST00000663324.1:ENST00000608184.2:ENST00000659678.1:ENST00000653097.1:ENST00000499430.7:ENST00000512438.6:ENST00000610009.5:ENST00000670249.1:ENST00000502693.1:ENST00000665126.1:ENST00000669065.1:ENST00000667824.1:ENST00000655855.1	lncRNA	lncRNA	lncRNA	lncRNA	0	62	2	5.02927	5.308035	5.5868	0.020474	0.0095202	0.0979776	0.0650078
chr9	123405486	123405586	4396615	0	-	0.56	(0.523,0.58]	chr9	419589	16	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	5.02927	5.308035	5.5868	0.020474	0.0095202	0.0979776	0.0650078
chr17	2329675	2329775	6835102	0	-	0.46	(0.45,0.485]	chr17	691212	2	SS3_PROX	SS3_PROX:INTRON	TSR1	ENSG00000167721.11	ENST00000301364.10:ENST00000575049.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	180	2	3.91292	5.3078650000000005	6.70281	0.00338129	9.72404e-4	0.0371948	0.0139392
chr9	129340467	129340562	4250342	0	+	0.4	(0.39,0.419]	chr9	404662	12	INTRON	INTRON	LINC01503	ENSG00000233901.7	ENST00000427109.2:ENST00000654735.1:ENST00000654190.1:ENST00000657886.1:ENST00000661745.1:ENST00000436710.6:ENST00000660635.1:ENST00000657651.1:ENST00000665063.2:ENST00000667257.1:ENST00000690929.1:ENST00000654148.1:ENST00000444125.3:ENST00000666671.1:ENST00000660036.1:ENST00000657393.1:ENST00000659864.1	lncRNA	lncRNA	lncRNA	lncRNA	0	63	2	4.88366	5.3078	5.73194	0.0707789	0.00276973	0.168159	0.0286873
chr20	32128716	32128815	7454361	0	+	0.383838	(0.36,0.39]	chr20	775905	122	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000442842.5:ENST00000450829.5:ENST00000217315.9:ENST00000417389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	63	2	5.04893	5.307735	5.56654	0.0272676	0.0125348	0.112327	0.0765738
chr2	24641967	24642067	728489	0	+	0.5	(0.485,0.523]	chr2	84999	571	INTRON	INTRON	NCOA1	ENSG00000084676.16	ENST00000348332.8:ENST00000496333.5:ENST00000406961.5:ENST00000405141.5:ENST00000407230.5:ENST00000483904.5:ENST00000288599.9:ENST00000395856.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	60	2	5.17012	5.307505	5.44489	0.038581	0.00377098	0.131324	0.0353672
chr10	102647217	102647317	4576496	0	+	0.61	(0.58,1]	chr10	437280	10	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	549	2	5.09771	5.3074650000000005	5.51722	1.96204e-4	2.43539e-6	0.00788601	1.90683e-4
chr17	30163162	30163262	6710545	0	+	0.47	(0.45,0.485]	chr17	673853	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	181	2	3.68222	5.30746	6.9327	0.00220534	0.00183454	0.0295736	0.0216929
chr11	61273907	61273998	5041318	0	-	0.593407	(0.58,1]	chr11	488767	2	INTRON	INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	197	2	3.56178	5.307445	7.05311	0.00626219	1.5843e-5	0.0523832	7.12006e-4
chr11	70777857	70777957	5062060	0	-	0.49	(0.485,0.523]	chr11	492701	600	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	139	2	3.80685	5.3074200000000005	6.80799	0.00388927	0.0023441	0.0363508	0.0305023
chr19	53521515	53521610	7290495	0	+	0.610526	(0.58,1]	chr19	750312	7	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	ZNF331	ENSG00000130844.19	ENST00000647573.1:ENST00000648236.1:ENST00000513929.6:ENST00000253144.13:ENST00000649326.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	73	2	4.3962	5.30736	6.21852	0.0250928	0.00350812	0.114418	0.0379357
chr14	95408261	95408360	6048859	0	-	0.424242	(0.419,0.45]	chr14	593438	11	UTR3	UTR3:EXON_MRNA	SYNE3	ENSG00000176438.13	ENST00000682763.1:ENST00000557275.5	protein_coding	protein_coding	protein_coding	protein_coding	2	387	2	4.88763	5.307335	5.72704	0.00264581	2.7532e-5	0.032596	0.00106028
chr9	94999817	94999917	4189991	0	+	0.39	(0.36,0.39]	chr9	398123	200	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000297979.9:ENST00000424143.5:ENST00000462125.5:ENST00000479161.5:ENST00000451893.5:ENST00000460573.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	5.16105	5.3073250000000005	5.4536	0.0321864	0.00993384	0.121593	0.0666221
chr6	52537444	52537544	3148052	0	-	0.48	(0.45,0.485]	chr6	307028	12	INTRON	INTRON	TRAM2	ENSG00000065308.5	ENST00000182527.4	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.0722	5.307029999999999	5.54186	0.0243502	0.00988295	0.106588	0.0664239
chr9	123407482	123407582	4396635	0	-	0.47	(0.45,0.485]	chr9	419589	36	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	5.0722	5.307029999999999	5.54186	0.0243502	0.00988295	0.106588	0.0664239
chr3	58283886	58283986	1485221	0	+	0.45	(0.419,0.45]	chr3	159880	87	INTRON	INTRON	ABHD6	ENSG00000163686.15	ENST00000295962.8:ENST00000478253.6	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	4.91849	5.306945000000001	5.6954	0.0254103	0.0174488	0.108573	0.0928044
chr5	1104699	1104799	2608898	0	-	0.55	(0.523,0.58]	chr5	259667	101	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	4.7629	5.306884999999999	5.85087	0.0167014	0.0132767	0.0917029	0.0787251
chr3	51663618	51663717	1472176	0	+	0.545455	(0.523,0.58]	chr3	157989	3	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.1205	5.30686	5.49322	0.0416463	0.00324246	0.136301	0.0319521
chr6	36065711	36065811	2904678	0	+	0.41	(0.39,0.419]	chr6	284907	60	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000622903.4:ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5:ENST00000472333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	191	2	3.48402	5.3068550000000005	7.12969	0.00359214	0.00204089	0.0342681	0.0283511
chr4	81504116	81504216	2259709	0	-	0.51	(0.485,0.523]	chr4	228151	323	INTRON	INTRON	RASGEF1B	ENSG00000138670.19	ENST00000638048.1:ENST00000512716.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	62	2	5.02573	5.3064800000000005	5.58723	0.0203514	0.00985879	0.0979211	0.0664239
chr5	10694371	10694471	2611980	0	-	0.41	(0.39,0.419]	chr5	260254	104	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	62	2	5.16048	5.30636	5.45224	0.032783	0.00999413	0.122593	0.0667545
chr7	29195684	29195782	3334299	0	+	0.377551	(0.36,0.39]	chr7	322839	3	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5:ENST00000222792.11:ENST00000409350.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	187	2	3.65014	5.30628	6.96242	0.00268438	0.00234193	0.0328854	0.025771
chr2	87529314	87529414	847943	0	+	0.58	(0.523,0.58]	chr2	95749	79	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000642451.1:ENST00000644478.1:ENST00000409139.6:ENST00000644125.1:ENST00000643743.1:ENST00000643276.1:ENST00000409898.2:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000646636.1:ENST00000629257.1:ENST00000409054.2	lncRNA	lncRNA	lncRNA	lncRNA	3	212	2	3.75859	5.30602	6.85345	0.00216679	6.91189e-4	0.0292299	0.0109563
chr6	56483924	56484023	3152448	0	-	0.343434	(0.33,0.36]	chr6	307525	5	EXON_MRNA	EXON_MRNA:INTRON	DST	ENSG00000151914.22	ENST00000244364.10:ENST00000312431.10:ENST00000421834.6:ENST00000680361.1:ENST00000370788.6:ENST00000520645.6:ENST00000651790.1:ENST00000340834.10:ENST00000361203.7:ENST00000487754.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	63	2	4.99985	5.30598	5.61211	0.022456	0.0127452	0.102751	0.0773423
chr3	71412059	71412159	1829569	0	-	0.46	(0.45,0.485]	chr3	188242	514	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000649145.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	61	2	5.00859	5.305785	5.60298	0.052901	0.00292492	0.14912	0.029882
chr1	178257371	178257471	288175	0	+	0.42	(0.419,0.45]	chr1	32935	231	INTRON	INTRON	RASAL2	ENSG00000075391.18	ENST00000367649.8:ENST00000465723.1:ENST00000696605.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	5.04043	5.30547	5.57051	0.0625897	0.00441471	0.160305	0.0393688
chr16	57374612	57374710	6466010	0	+	0.438776	(0.419,0.45]	chr16	641365	16	INTRON	INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.04043	5.30547	5.57051	0.0625897	0.00441471	0.160305	0.0393688
chr11	12814323	12814423	4803045	0	+	0.49	(0.485,0.523]	chr11	460563	495	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	4.75939	5.305345	5.8513	0.0172254	0.0131886	0.0923809	0.0785398
chr16	85429819	85429919	6517369	0	+	0.49	(0.485,0.523]	chr16	646391	705	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	4.75939	5.305345	5.8513	0.0172254	0.0131886	0.0923809	0.0785398
chr11	71068958	71069058	5064983	0	-	0.5	(0.485,0.523]	chr11	492754	120	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000618363.4:ENST00000458632.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	60	2	5.12092	5.305289999999999	5.48966	0.0414411	0.0033837199999999998	0.136301	0.0328791
chr10	102748930	102749029	4576992	0	+	0.484848	(0.45,0.485]	chr10	437414	44	INTRON	INTRON	WBP1L	ENSG00000166272.18	ENST00000448841.7:ENST00000647664.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	61	2	5.18438	5.305125	5.42587	0.0290571	0.00773818	0.116079	0.0568726
chr20	38751830	38751930	7477131	0	+	0.46	(0.45,0.485]	chr20	778633	3	SS3_PROX	SS3_PROX:INTRON	ACTR5	ENSG00000101442.10	ENST00000243903.6	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.18438	5.305125	5.42587	0.0290571	0.00773818	0.116079	0.0568726
chr2	114002988	114003086	882348	0	+	0.520408	(0.485,0.523]	chr2	99856	6	INTRON	INTRON	LINC01191	ENSG00000234199.3	ENST00000663402.1:ENST00000660948.1:ENST00000670955.1:ENST00000412690.1	lncRNA	lncRNA	lncRNA	lncRNA	0	60	2	5.30159	5.3049800000000005	5.30837	0.0314138	0.00529578	0.12069	0.044517
chr3	31602054	31602154	1434695	0	+	0.51	(0.485,0.523]	chr3	153080	12	INTRON	INTRON	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5:ENST00000436236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	60	2	5.30159	5.3049800000000005	5.30837	0.0314138	0.00529578	0.12069	0.044517
chr19	1169245	1169344	7305745	0	-	0.69697	(0.58,1]	chr19	753058	2	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.25731	5.304725	5.35214	0.0181452	0.00358178	0.0921579	0.0342681
chr16	85228265	85228365	6515351	0	+	0.53	(0.523,0.58]	chr16	646377	5	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	77	2	4.34118	5.30419	6.2672	0.0372357	0.00644151	0.139793	0.0530091
chr1	91013751	91013851	525646	0	-	0.28	[0,0.29]	chr1	61801	310	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	148	2	3.90743	5.304035	6.70064	0.00794485	9.34859e-5	0.0596361	0.00260461
chr11	68350127	68350226	4882459	0	+	0.484848	(0.45,0.485]	chr11	470548	15	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	70	2	4.59225	5.302655	6.01306	0.0259502	0.0113949	0.116361	0.0723462
chr6	43050774	43050867	3135537	0	-	0.462366	(0.45,0.485]	chr6	305972	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CUL7	ENSG00000044090.13	ENST00000265348.9:ENST00000690231.1:ENST00000685042.1:ENST00000689256.1:ENST00000674112.2:ENST00000674134.1:ENST00000674100.1:ENST00000686442.1:ENST00000688302.1:ENST00000673753.1:ENST00000687225.1:ENST00000688707.1:ENST00000683493.1:ENST00000683160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	70	2	4.59225	5.302655	6.01306	0.0259502	0.0113949	0.116361	0.0723462
chr2	210073753	210073853	1365456	0	-	0.38	(0.36,0.39]	chr2	145371	293	INTRON	INTRON	KANSL1L	ENSG00000144445.17	ENST00000281772.14:ENST00000418791.5:ENST00000452086.5:ENST00000457374.5:ENST00000428655.5	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.24317	5.30264	5.36211	0.0433841	0.00643924	0.138813	0.0503748
chr1	10155157	10155257	23595	0	+	0.56	(0.523,0.58]	chr1	2617	32	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.25403	5.302635	5.35124	0.0295772	0.00573579	0.116079	0.0467736
chr2	3297297	3297397	1081080	0	-	0.55	(0.523,0.58]	chr2	117633	146	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	60	2	5.25403	5.302635	5.35124	0.0295772	0.00573579	0.116079	0.0467736
chr6	169575338	169575438	3303608	0	-	0.57	(0.523,0.58]	chr6	319808	24	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	60	2	5.25403	5.302635	5.35124	0.0295772	0.00573579	0.116079	0.0467736
chr7	47500114	47500214	3588813	0	-	0.55	(0.523,0.58]	chr7	346132	186	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.25403	5.302635	5.35124	0.0295772	0.00573579	0.116079	0.0467736
chr10	67974081	67974181	4701599	0	-	0.45	(0.419,0.45]	chr10	447851	69	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000277817.10:ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6:ENST00000460168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	72	2	4.56048	5.3024450000000005	6.04441	0.0337332	0.0149622	0.133139	0.0835955
chr2	191370392	191370492	977657	0	+	0.33	(0.29,0.33]	chr2	107595	1	SS5_PROX	SS5_PROX:INTRON	MYO1B	ENSG00000128641.19	ENST00000339514.8:ENST00000392318.8:ENST00000304164.8:ENST00000392316.5:ENST00000634375.1	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.07676	5.30224	5.52772	0.0412683	0.00324812	0.136301	0.0319647
chr16	84087760	84087860	6648965	0	-	0.39	(0.36,0.39]	chr16	665116	3	SS3_PROX	SS3_PROX:INTRON	MBTPS1	ENSG00000140943.18	ENST00000343411.8:ENST00000569770.5:ENST00000563231.5:ENST00000565863.1:ENST00000570012.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	169	2	3.57375	5.302225	7.0307	0.0228532	8.91641e-5	0.102982	0.00250881
chr17	7109977	7110076	6847733	0	-	0.575758	(0.523,0.58]	chr17	693423	7	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	13	1408	2	4.37538	5.30208	6.22878	3.95366e-5	2.03035e-5	0.00350358	8.47843e-4
chr9	134367279	134367379	4261096	0	+	0.69	(0.58,1]	chr9	406311	403	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	59	2	5.08534	5.301735000000001	5.51813	0.013519	0.00549379	0.0792526	0.0454065
chr16	4082970	4083069	6541460	0	-	0.50505	(0.485,0.523]	chr16	650517	289	INTRON	INTRON	ADCY9	ENSG00000162104.10	ENST00000294016.8:ENST00000571467.1:ENST00000572288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	5.06999	5.3015349999999994	5.53308	0.0445854	0.00304306	0.140478	0.0306636
chr6	128517328	128517428	3257144	0	-	0.39	(0.36,0.39]	chr6	315230	251	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000524534.5:ENST00000525459.1:ENST00000392449.4:ENST00000532751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	61	2	5.14958	5.301305	5.45303	0.0493212	0.00525731	0.146207	0.044445
chr6	507192	507292	3077212	0	-	0.56	(0.523,0.58]	chr6	299297	71	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	1	159	2	3.93759	5.301270000000001	6.66495	0.0103671	1.32802e-4	0.0686683	0.00337193
chr9	137570127	137570227	4435765	0	-	0.48	(0.45,0.485]	chr9	424466	46	INTRON	INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000475100.5:ENST00000472113.5:ENST00000485189.5:ENST00000467768.5:ENST00000477690.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	65	2	4.64346	5.3012	5.95894	0.0850039	0.00119342	0.181766	0.016037
chr3	125841836	125841936	1904355	0	-	0.48	(0.45,0.485]	chr3	193169	140	INTRON	INTRON	LINC02614	ENSG00000241288.8	ENST00000599350.5:ENST00000601985.5:ENST00000664857.1:ENST00000657594.1:ENST00000594843.1:ENST00000617582.1:ENST00000622381.4:ENST00000625484.1	lncRNA	lncRNA	lncRNA	lncRNA	0	64	2	4.88567	5.301130000000001	5.71659	0.018513	0.0146126	0.0928429	0.0837727
chr4	56934047	56934147	2046993	0	+	0.37	(0.36,0.39]	chr4	209467	20	UTR3	UTR3:EXON_MRNA:INTRON	REST	ENSG00000084093.19	ENST00000640168.2:ENST00000309042.12:ENST00000640343.2:ENST00000514063.2:ENST00000638187.2:ENST00000616975.5:ENST00000619101.5:ENST00000675105.1:ENST00000675341.1	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.28778	5.301095	5.31441	0.0407706	0.00715023	0.135868	0.0541241
chr7	47394100	47394200	3587733	0	-	0.33	(0.29,0.33]	chr7	346036	241	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	4.91217	5.300784999999999	5.6894	0.0522244	0.00217863	0.148503	0.0243976
chr1	43982818	43982918	110989	0	+	0.56	(0.523,0.58]	chr1	13823	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	B4GALT2	ENSG00000117411.18	ENST00000434555.7:ENST00000372324.6:ENST00000481924.2:ENST00000497866.6:ENST00000485678.6:ENST00000356836.10:ENST00000309519.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	61	2	5.08882	5.300645	5.51247	0.0230387	0.00834774	0.102982	0.0598672
chr10	127067470	127067570	4608592	0	+	0.41	(0.39,0.419]	chr10	440762	53	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	4.69798	5.30043	5.90288	0.088901	0.00183094	0.183874	0.0216571
chr10	67946300	67946400	4701314	0	-	0.41	(0.39,0.419]	chr10	447827	48	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000277817.10:ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	61	2	5.14823	5.300345	5.45246	0.0501234	0.00529344	0.147892	0.044517
chr20	4966694	4966794	7518227	0	-	0.4	(0.39,0.419]	chr20	784900	336	INTRON	INTRON	SLC23A2	ENSG00000089057.15	ENST00000379333.5:ENST00000338244.6:ENST00000468355.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	5.14823	5.300345	5.45246	0.0501234	0.00529344	0.147892	0.044517
chr11	96295988	96296088	5113096	0	-	0.24	[0,0.29]	chr11	496566	2021	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	2	240	2	4.34948	5.30034	6.2512	0.00122433	3.56971e-4	0.0212183	0.00688785
chr17	15454183	15454283	6859976	0	-	0.5	(0.485,0.523]	chr17	695067	7	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	131	2	4.33291	5.300269999999999	6.26763	0.00639185	9.5504e-4	0.0529032	0.0137043
chr18	49046301	49046400	7158124	0	-	0.494949	(0.485,0.523]	chr18	727833	17	INTRON	INTRON	DYM	ENSG00000141627.14	ENST00000675505.1:ENST00000269445.10:ENST00000442713.6:ENST00000577734.1	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.90542	5.300095000000001	5.69477	0.0561086	0.00203227	0.154188	0.0232814
chr2	27902872	27902971	737849	0	+	0.454545	(0.45,0.485]	chr2	86507	78	INTRON	INTRON	MRPL33:BABAM2	ENSG00000243147.8:ENSG00000158019.21	ENST00000448427.1:ENST00000436924.5:ENST00000344773.6:ENST00000379624.6:ENST00000603461.1:ENST00000496951.1:ENST00000342045.6:ENST00000379632.6:ENST00000361704.6:ENST00000379629.7:ENST00000604932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	63	2	4.95056	5.2998899999999995	5.64922	0.020599	0.0127826	0.0982852	0.0773423
chr12	57111190	57111271	5439769	0	-	0.54321	(0.523,0.58]	chr12	535338	2	UTR5	UTR5:EXON_MRNA:INTRON	STAT6	ENSG00000166888.12	ENST00000300134.8:ENST00000651176.1:ENST00000553533.2:ENST00000554764.6:ENST00000538913.6:ENST00000556155.5:ENST00000537215.6:ENST00000454075.7:ENST00000640254.2:ENST00000556259.5:ENST00000553499.5:ENST00000553397.5:ENST00000553275.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	573	2	4.43482	5.29969	6.16456	0.00112263	3.15454e-6	0.0202727	2.27679e-4
chr10	98260821	98260921	4744301	0	-	0.62	(0.58,1]	chr10	453109	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LOXL4	ENSG00000138131.4	ENST00000260702.4	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.00585	5.299545	5.59324	0.0323732	0.0014734	0.121593	0.0185589
chr19	45362342	45362442	7387150	0	-	0.59	(0.58,1]	chr19	767057	3	INTRON	INTRON	ERCC2	ENSG00000104884.17	ENST00000391945.10:ENST00000682508.1:ENST00000684218.1:ENST00000684407.1:ENST00000684458.1:ENST00000682414.1:ENST00000646507.1:ENST00000391944.8:ENST00000391941.6:ENST00000587376.6:ENST00000485403.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	58	2	5.00585	5.299545	5.59324	0.0323732	0.0014734	0.121593	0.0185589
chr9	134339135	134339235	4260814	0	+	0.66	(0.58,1]	chr9	406311	121	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	122	2	4.15724	5.299415	6.44159	0.00221069	0.00107173	0.0295736	0.0148869
chr12	51093952	51094051	5428314	0	-	0.373737	(0.36,0.39]	chr12	532768	4	UTR3	UTR3:EXON_MRNA	TFCP2	ENSG00000135457.11	ENST00000257915.10:ENST00000685804.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	138	2	4.35204	5.299405	6.24677	0.00931845	0.00120025	0.0649153	0.016121
chr9	6889251	6889349	4116269	0	+	0.469388	(0.45,0.485]	chr9	391885	8	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000438023.5:ENST00000381306.7:ENST00000381309.8:ENST00000489243.5:ENST00000543771.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	65	2	4.81772	5.29934	5.78096	0.0167663	0.0166968	0.0917029	0.0884836
chr1	97720133	97720227	547277	0	-	0.43617	(0.419,0.45]	chr1	63024	5	UTR3	UTR3:EXON_MRNA:INTRON	DPYD	ENSG00000188641.14	ENST00000370192.8:ENST00000474241.1:ENST00000306031.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	62	2	4.98767	5.29899	5.61031	0.0669167	0.004032	0.16272	0.0371291
chr3	66019098	66019198	1815673	0	-	0.42	(0.419,0.45]	chr3	187318	100	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	62	2	4.98767	5.29899	5.61031	0.0669167	0.004032	0.16272	0.0371291
chr4	3099494	3099594	2002824	0	+	0.44	(0.419,0.45]	chr4	204281	1	SS5_PROX	SS5_PROX:INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000680291.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	62	2	4.98767	5.29899	5.61031	0.0669167	0.004032	0.16272	0.0371291
chr1	43567096	43567195	107110	0	+	0.59596	(0.58,1]	chr1	13192	128	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	5.20223	5.298845	5.39546	0.0168207	0.00411607	0.0884836	0.0374453
chr19	2203967	2204065	7188898	0	+	0.632653	(0.58,1]	chr19	731581	8	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.20223	5.298845	5.39546	0.0168207	0.00411607	0.0884836	0.0374453
chr2	105329324	105329424	1242829	0	-	0.6	(0.58,1]	chr2	134006	3	SS5_PROX	SS5_PROX:INTRON	TGFBRAP1	ENSG00000135966.13	ENST00000393359.7	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.20223	5.298845	5.39546	0.0168207	0.00411607	0.0884836	0.0374453
chr22	50233726	50233826	7827198	0	-	0.6	(0.58,1]	chr22	821199	2	SS3_PROX	SS3_PROX:INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	58	2	5.20223	5.298845	5.39546	0.0168207	0.00411607	0.0884836	0.0374453
chr4	3364792	3364892	2005084	0	+	0.64	(0.58,1]	chr4	204663	214	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	58	2	5.20223	5.298845	5.39546	0.0168207	0.00411607	0.0884836	0.0374453
chr13	45024205	45024304	5580549	0	+	0.434343	(0.419,0.45]	chr13	550395	34	INTRON	INTRON	GPALPP1	ENSG00000133114.18	ENST00000379151.9:ENST00000361121.6:ENST00000497558.5:ENST00000357537.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	63	2	5.04004	5.298715	5.55739	0.0310506	0.0137308	0.119758	0.0814223
chr13	113610095	113610195	5659101	0	+	0.57	(0.523,0.58]	chr13	555775	239	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	63	2	4.71922	5.29856	5.8779	0.0721601	0.00121652	0.168159	0.0162693
chr2	202691580	202691680	996711	0	+	0.38	(0.36,0.39]	chr2	109362	554	INTRON	INTRON	FAM117B	ENSG00000138439.12	ENST00000392238.3:ENST00000481658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	71	2	4.56926	5.2984	6.02754	0.031369	0.0133452	0.127822	0.0789398
chr22	25459877	25459975	7701141	0	+	0.540816	(0.523,0.58]	chr22	805970	3	SS5_PROX	SS5_PROX:INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000382734.10:ENST00000686640.1:ENST00000509460.3:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	133	2	3.98894	5.2984	6.60786	0.00345115	0.00237791	0.037649	0.026
chr15	34577495	34577594	6218395	0	-	0.424242	(0.419,0.45]	chr15	612417	22	INTRON	INTRON	GOLGA8B	ENSG00000215252.12	ENST00000683415.1:ENST00000569100.5:ENST00000484716.5:ENST00000564575.5:ENST00000566091.5:ENST00000566258.1:ENST00000569811.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	62	2	5.15214	5.298305	5.44447	0.0364384	0.0109324	0.128173	0.0706366
chr17	38078346	38078446	6727783	0	+	0.44	(0.419,0.45]	chr17	676116	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000274615	ENSG00000274615.1	ENST00000611212.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	62	2	5.15214	5.298305	5.44447	0.0364384	0.0109324	0.128173	0.0706366
chr7	72888635	72888734	3387230	0	+	0.424242	(0.419,0.45]	chr7	326696	84	INTRON	INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	5.15214	5.298305	5.44447	0.0364384	0.0109324	0.128173	0.0706366
chr6	20909143	20909243	2867693	0	+	0.35	(0.33,0.36]	chr6	279740	626	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.00642	5.298225	5.59003	0.0542065	0.00344516	0.151733	0.0333853
chr14	93010794	93010894	6042637	0	-	0.57	(0.523,0.58]	chr14	592703	120	INTRON	INTRON	ITPK1	ENSG00000100605.17	ENST00000267615.11:ENST00000354313.7:ENST00000556603.6:ENST00000555495.5:ENST00000556954.5:ENST00000554999.5:ENST00000556185.5:ENST00000555553.5:ENST00000557309.1:ENST00000553452.5:ENST00000553655.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	5.01677	5.297785	5.5788	0.0482765	0.00262418	0.144601	0.0278348
chr16	8682558	8682657	6381215	0	+	0.555556	(0.523,0.58]	chr16	631145	75	INTRON	INTRON	ABAT	ENSG00000183044.12	ENST00000564714.5:ENST00000268251.13:ENST00000563992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	64	2	4.65157	5.29773	5.94389	0.0787008	0.0010207	0.175203	0.0143498
chr14	89268253	89268353	6026781	0	-	0.4	(0.39,0.419]	chr14	591436	38	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	188	2	3.54079	5.2975449999999995	7.0543	0.00311183	0.00234061	0.0311915	0.0305023
chrX	2880355	2880453	7831339	0	+	0.397959	(0.39,0.419]	chrX	822236	27	INTRON	INTRON	GYG2	ENSG00000056998.20	ENST00000381163.7:ENST00000381161.5:ENST00000398806.8:ENST00000353656.10:ENST00000639373.1:ENST00000381157.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	5.09906	5.29746	5.49586	0.0535378	0.00479873	0.150319	0.0416285
chr22	46648421	46648521	7744662	0	+	0.49	(0.485,0.523]	chr22	812052	101	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	4.68434	5.29737	5.9104	0.0200045	0.0119344	0.100864	0.0741726
chr18	48658557	48658656	7057853	0	+	0.40404	(0.39,0.419]	chr18	720311	215	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1:ENST00000589585.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	142	2	4.59477	5.2972	5.99963	0.0142473	6.29597e-4	0.0817691	0.0102619
chr9	134367478	134367578	4261098	0	+	0.57	(0.523,0.58]	chr9	406311	405	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	60	2	5.20104	5.297155	5.39327	0.0277354	0.00648051	0.112851	0.0503748
chr7	40055151	40055250	3353388	0	+	0.40404	(0.39,0.419]	chr7	324218	61	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1:ENST00000484589.2:ENST00000643915.1:ENST00000645470.1:ENST00000642592.1	protein_coding	protein_coding	protein_coding	protein_coding	1	168	2	3.93153	5.296895	6.66226	0.0128331	2.52597e-4	0.0771174	0.00536182
chr21	36783781	36783881	7668294	0	-	0.46	(0.45,0.485]	chr21	801308	161	INTRON	INTRON	HLCS	ENSG00000159267.17	ENST00000674895.3:ENST00000336648.8:ENST00000612277.4:ENST00000399120.5:ENST00000675307.1:ENST00000675057.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	62	2	4.83755	5.2968	5.75605	0.06646	0.002004	0.162385	0.0230381
chr19	2337174	2337253	7189494	0	+	0.683544	(0.58,1]	chr19	731787	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1:ENST00000593243.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	122	2	4.55404	5.296485	6.03893	0.00503456	3.19972e-4	0.0464858	0.00635576
chr12	45266761	45266861	5212989	0	+	0.47	(0.45,0.485]	chr12	506331	381	INTRON	INTRON	ANO6	ENSG00000177119.17	ENST00000426898.2:ENST00000425752.6:ENST00000423947.7:ENST00000320560.13:ENST00000680498.1:ENST00000550630.5:ENST00000680201.1:ENST00000681156.1:ENST00000679761.1:ENST00000680371.1:ENST00000681817.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	60	2	5.2551	5.296455	5.33781	0.0373953	0.0054758	0.130656	0.0454065
chrX	1416589	1416687	7965645	0	-	0.479592	(0.45,0.485]	chrX	834254	34	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.2551	5.296455	5.33781	0.0373953	0.0054758	0.130656	0.0454065
chr1	20774407	20774506	414124	0	-	0.313131	(0.29,0.33]	chr1	48419	9	UTR5	UTR5:EXON_MRNA:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5:ENST00000424732.5:ENST00000417710.5	protein_coding	protein_coding	protein_coding	protein_coding	1	160	2	4.14714	5.296390000000001	6.44564	0.0065704	2.86305e-4	0.0537374	0.00587031
chr3	125368107	125368207	1902707	0	-	0.33	(0.29,0.33]	chr3	193003	104	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000471196.1	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.19216	5.296335	5.40051	0.0252356	0.00712176	0.108065	0.0541241
chr9	124490181	124490281	4402624	0	-	0.59	(0.58,1]	chr9	419805	68	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.76284	5.29624	5.82964	0.0471737	7.58111e-4	0.143232	0.0117078
chr2	120278214	120278314	887954	0	+	0.6	(0.58,1]	chr2	100429	2	SS3_PROX	SS3_PROX:INTRON	RALB	ENSG00000144118.14	ENST00000447591.5:ENST00000420510.5:ENST00000431732.5:ENST00000272519.10:ENST00000631312.2:ENST00000470417.1:ENST00000412383.5:ENST00000449649.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	62	2	4.62403	5.296085	5.96814	0.0578275	5.06433e-4	0.154343	0.00881473
chr11	70744382	70744482	5061725	0	-	0.66	(0.58,1]	chr11	492701	265	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	4.89007	5.29599	5.70191	0.00964351	0.00872525	0.0659937	0.0612699
chr16	85515083	85515183	6518222	0	+	0.6	(0.58,1]	chr16	646391	1558	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.89007	5.29599	5.70191	0.00964351	0.00872525	0.0659937	0.0612699
chr16	84124918	84125013	6649301	0	-	0.378947	(0.36,0.39]	chr16	665181	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	HSDL1	ENSG00000103160.12	ENST00000219439.9:ENST00000619773.1:ENST00000434463.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	63	2	4.98942	5.295859999999999	5.6023	0.0258522	0.0141427	0.109555	0.0833845
chrX	44899285	44899385	7871934	0	+	0.41	(0.39,0.419]	chrX	825082	249	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	502	2	5.25298	5.29572	5.33846	0.00100329	2.4807e-5	0.0190748	9.81945e-4
chr1	44812522	44812622	115028	0	+	0.5	(0.485,0.523]	chr1	14298	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BTBD19	ENSG00000222009.9	ENST00000450269.6:ENST00000409335.6:ENST00000439563.2:ENST00000485668.5:ENST00000482715.5:ENST00000475105.5:ENST00000495433.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	60	2	5.19749	5.295590000000001	5.39369	0.0275819	0.00672953	0.112782	0.0519464
chr6	13590116	13590212	2855848	0	+	0.333333	(0.33,0.36]	chr6	279046	7	INTRON	INTRON	SIRT5	ENSG00000124523.17	ENST00000680432.1:ENST00000681012.1:ENST00000397350.7:ENST00000680442.1:ENST00000680754.1:ENST00000679658.1:ENST00000681243.1:ENST00000680747.1:ENST00000681818.1:ENST00000680402.1:ENST00000679663.1:ENST00000379250.10:ENST00000680852.1:ENST00000679922.1:ENST00000681231.1:ENST00000359782.8:ENST00000606117.2:ENST00000379262.8:ENST00000681905.1:ENST00000680937.1:ENST00000680151.1:ENST00000680707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	135	2	4.28923	5.295195	6.30116	0.00721369	0.0013058	0.0564903	0.0171747
chr10	79176814	79176914	4533125	0	+	0.54	(0.523,0.58]	chr10	432438	143	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.96714	5.29486	5.62258	0.0193313	0.0108948	0.0954446	0.0706366
chr11	70783253	70783353	5062114	0	-	0.57	(0.523,0.58]	chr11	492701	654	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	4.96714	5.29486	5.62258	0.0193313	0.0108948	0.0954446	0.0706366
chr11	70788149	70788249	5062163	0	-	0.53	(0.523,0.58]	chr11	492701	703	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	4.96714	5.29486	5.62258	0.0193313	0.0108948	0.0954446	0.0706366
chr7	1024301	1024401	3526466	0	-	0.6	(0.58,1]	chr7	340572	138	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	4.95814	5.29466	5.63118	0.0109983	0.0074469	0.0708586	0.0553519
chr7	76999609	76999708	3398796	0	+	0.606061	(0.58,1]	chr7	328286	89	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	60	2	4.95814	5.29466	5.63118	0.0109983	0.0074469	0.0708586	0.0553519
chr19	1169742	1169842	7305750	0	-	0.46	(0.45,0.485]	chr19	753058	7	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.1123	5.29439	5.47648	0.0458344	0.0039628	0.142336	0.0368027
chr13	113051211	113051311	5656147	0	+	0.71	(0.58,1]	chr13	555180	40	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	145	2	3.44157	5.29417	7.14677	0.00760198	4.73371e-4	0.0561937	0.0125708
chr6	30317675	30317774	3116879	0	-	0.363636	(0.36,0.39]	chr6	302392	28	INTRON	INTRON	HCG18	ENSG00000231074.10	ENST00000665953.1:ENST00000670397.1:ENST00000659132.1:ENST00000659836.1:ENST00000669374.1:ENST00000653541.1:ENST00000670071.1:ENST00000666294.1:ENST00000657247.1:ENST00000654996.1:ENST00000653301.1:ENST00000658695.1:ENST00000664861.1:ENST00000668974.1:ENST00000654915.1:ENST00000660593.1:ENST00000687430.1:ENST00000656629.1:ENST00000602550.5:ENST00000687815.1:ENST00000449544.6:ENST00000426882.6:ENST00000438412.6:ENST00000602698.6:ENST00000454129.5:ENST00000444126.5:ENST00000602290.2:ENST00000412685.8:ENST00000602861.6:ENST00000454269.6:ENST00000686575.1:ENST00000687471.1:ENST00000691282.1:ENST00000413358.6:ENST00000602498.1	lncRNA	lncRNA	lncRNA	lncRNA	0	61	2	5.04949	5.29402	5.53855	0.0563927	0.00432809	0.154188	0.0389438
chr1	12510486	12510584	32940	0	+	0.602041	(0.58,1]	chr1	4299	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000543710.5:ENST00000543766.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	4.81862	5.2939799999999995	5.76934	0.0102696	0.00849371	0.0678072	0.0617717
chr18	76418965	76419065	7179309	0	-	0.54	(0.523,0.58]	chr18	730080	383	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	4.58058	5.293795	6.00701	0.0860403	8.61362e-4	0.181766	0.0127848
chr15	89115322	89115421	6180722	0	+	0.414141	(0.39,0.419]	chr15	607909	11	INTRON	INTRON	ABHD2	ENSG00000140526.18	ENST00000569411.5:ENST00000569550.5:ENST00000565066.5:ENST00000565973.5:ENST00000352732.10	protein_coding	protein_coding	protein_coding	protein_coding	1	141	2	3.8817	5.29376	6.70582	0.00435618	0.00397784	0.0427656	0.0368932
chr9	104799318	104799418	4361090	0	-	0.43	(0.419,0.45]	chr9	416220	1	SS5_PROX	SS5_PROX:INTRON	ABCA1	ENSG00000165029.17	ENST00000374736.8:ENST00000678995.1	protein_coding	protein_coding	protein_coding	protein_coding	1	174	2	4.07361	5.293745	6.51388	0.0109421	4.29619e-4	0.0708586	0.00783248
chr5	27482011	27482111	2396125	0	+	0.36	(0.33,0.36]	chr5	239124	2	SS3_PROX	SS3_PROX:INTRON	PURPL	ENSG00000250337.8	ENST00000651409.1:ENST00000650981.1:ENST00000655107.1:ENST00000657375.2:ENST00000659077.1:ENST00000653835.1:ENST00000657173.1:ENST00000514844.6:ENST00000657424.1:ENST00000660307.1:ENST00000669423.1:ENST00000659860.1:ENST00000652841.1:ENST00000686605.1:ENST00000690628.1:ENST00000510165.6:ENST00000670554.1:ENST00000665451.1:ENST00000667624.1:ENST00000667420.1:ENST00000660639.1:ENST00000668406.1:ENST00000656783.1:ENST00000512067.5:ENST00000664566.1:ENST00000659489.1:ENST00000667264.1:ENST00000670840.1:ENST00000503107.2:ENST00000654039.1:ENST00000687778.1:ENST00000505775.5:ENST00000668103.1:ENST00000664501.1:ENST00000661698.1:ENST00000655438.1:ENST00000514255.1	lncRNA	lncRNA	lncRNA	lncRNA	3	218	2	3.49627	5.293725	7.09118	0.00181255	0.00171371	0.025659	0.0215848
chr17	41834373	41834471	6901076	0	-	0.346939	(0.33,0.36]	chr17	701611	13	INTRON	INTRON	NT5C3B	ENSG00000141698.17	ENST00000435506.7:ENST00000523903.5:ENST00000469698.5:ENST00000521789.5:ENST00000470690.5:ENST00000393910.5:ENST00000415460.5:ENST00000445655.5:ENST00000476921.5:ENST00000460893.6:ENST00000475053.5:ENST00000495317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	64	2	4.8729	5.293645	5.71439	0.0191308	0.0164782	0.0952349	0.091341
chr6	166954791	166954889	3302041	0	-	0.479592	(0.45,0.485]	chr6	319750	24	EXON_MRNA	EXON_MRNA:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000358165.7:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	778	2	4.56656	5.2936250000000005	6.02069	0.00101549	5.73198e-4	0.0143256	0.0140229
chr1	44811222	44811301	115011	0	+	0.443038	(0.419,0.45]	chr1	14287	1	INTRON	INTRON	BTBD19	ENSG00000222009.9	ENST00000450269.6:ENST00000409335.6:ENST00000439563.2:ENST00000485668.5:ENST00000482715.5:ENST00000475105.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	61	2	5.23407	5.293620000000001	5.35317	0.0486006	0.00714797	0.145074	0.0541241
chr8	70388723	70388823	3995102	0	-	0.39	(0.36,0.39]	chr8	382245	916	INTRON	INTRON	NCOA2	ENSG00000140396.13	ENST00000452400.7:ENST00000518287.6:ENST00000520416.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	61	2	5.214	5.293535	5.37307	0.0361409	0.00887999	0.127853	0.0618231
chr2	156181590	156181690	1286645	0	-	0.37	(0.36,0.39]	chr2	138345	306	INTRON	INTRON	LINC01876	ENSG00000226383.7	ENST00000635799.1:ENST00000662073.1:ENST00000659502.1:ENST00000428651.2:ENST00000661513.1:ENST00000657334.1:ENST00000638047.1:ENST00000637554.1:ENST00000636956.1:ENST00000637665.1:ENST00000637476.1:ENST00000637324.1	lncRNA	lncRNA	lncRNA	lncRNA	1	137	2	4.27377	5.293395	6.31302	0.00834137	0.00147348	0.0613342	0.0185589
chr12	132785001	132785098	5540304	0	-	0.402062	(0.39,0.419]	chr12	546788	3	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	61	2	5.21344	5.29258	5.37172	0.0367885	0.00893514	0.129052	0.0620271
chr10	18573356	18573456	4642462	0	-	0.4	(0.39,0.419]	chr10	443321	210	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	167	2	3.66184	5.2923800000000005	6.92292	0.0200443	1.22286e-4	0.0971995	0.00319203
chr4	3366188	3366288	2005098	0	+	0.64	(0.58,1]	chr4	204663	228	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	162	2	3.73187	5.292175	6.85248	0.00101172	9.12934e-4	0.0180377	0.0143169
chr14	89335755	89335855	6027460	0	-	0.26	[0,0.29]	chr14	591456	21	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	126	2	4.19134	5.29213	6.39292	0.0027299	0.00124114	0.0331786	0.0165288
chr22	33464755	33464855	7798299	0	-	0.42	(0.419,0.45]	chr22	817588	263	INTRON	INTRON	LARGE1	ENSG00000133424.22	ENST00000608642.6:ENST00000609799.6:ENST00000610186.6:ENST00000397394.8:ENST00000413114.6:ENST00000676070.1:ENST00000674543.1:ENST00000676370.1:ENST00000354992.7:ENST00000402320.6:ENST00000675416.1:ENST00000676132.1:ENST00000676126.1:ENST00000675382.1:ENST00000676031.1:ENST00000674668.1:ENST00000674999.1:ENST00000674708.1:ENST00000674780.1:ENST00000674789.1:ENST00000675277.1:ENST00000421768.2:ENST00000434071.6:ENST00000432776.6:ENST00000423375.2:ENST00000430220.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	61	2	5.27868	5.29208	5.30548	0.0457732	0.00792071	0.142336	0.057762
chr7	157340856	157340956	3521748	0	+	0.61	(0.58,1]	chr7	340131	4	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000439402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	69	2	4.49116	5.29186	6.09256	0.0207449	0.00452436	0.102713	0.0436138
chr8	22200343	22200434	3769784	0	+	0.571429	(0.523,0.58]	chr8	362645	6	INTRON	INTRON	BMP1	ENSG00000168487.20	ENST00000354870.5:ENST00000520970.5:ENST00000518913.5:ENST00000520626.6:ENST00000520982.5:ENST00000306385.10:ENST00000306349.13:ENST00000471755.5:ENST00000483364.5:ENST00000521385.5:ENST00000522332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	131	2	4.4841	5.291855	6.09961	0.00866655	6.06023e-4	0.0623824	0.0100269
chr22	48702041	48702140	7751288	0	+	0.565657	(0.523,0.58]	chr22	812283	83	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	211	2	4.9637	5.29173	5.61976	0.00236826	0.00145953	0.0259199	0.023492
chrX	2880453	2880551	7831340	0	+	0.265306	[0,0.29]	chrX	822236	28	INTRON	INTRON	GYG2	ENSG00000056998.20	ENST00000381163.7:ENST00000381161.5:ENST00000398806.8:ENST00000353656.10:ENST00000639373.1:ENST00000381157.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	4.68855	5.29129	5.89403	0.0554735	9.73966e-4	0.154188	0.0139544
chr1	174797632	174797732	284394	0	+	0.63	(0.58,1]	chr1	32775	449	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000251507.8:ENST00000681986.1:ENST00000529145.6:ENST00000325589.9:ENST00000469553.6:ENST00000367687.5:ENST00000347255.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	58	2	5.14497	5.291245	5.43752	0.0156166	0.00474658	0.0849828	0.0413976
chr19	1998355	1998454	7307777	0	-	0.666667	(0.58,1]	chr19	753493	5	INTRON	INTRON	BTBD2	ENSG00000133243.10	ENST00000255608.9:ENST00000589200.3:ENST00000590646.5:ENST00000587742.5:ENST00000588395.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	58	2	5.14497	5.291245	5.43752	0.0156166	0.00474658	0.0849828	0.0413976
chr3	128493630	128493729	1563232	0	+	0.606061	(0.58,1]	chr3	165331	32	INTRON	INTRON	GATA2-AS1	ENSG00000244300.3	ENST00000464242.1:ENST00000468377.1:ENST00000669945.1	lncRNA	lncRNA	lncRNA	lncRNA	0	63	2	4.54927	5.29099	6.03271	0.0643046	4.18183e-4	0.161669	0.00770005
chr8	25238778	25238878	3774626	0	+	0.3	(0.29,0.33]	chr8	363466	535	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000410074.5:ENST00000481100.5	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	4.75412	5.290895000000001	5.82767	0.0180435	0.0124924	0.0952934	0.0761905
chr14	81291835	81291935	6021460	0	-	0.44	(0.419,0.45]	chr14	591042	127	INTRON	INTRON	STON2	ENSG00000140022.14	ENST00000553821.3:ENST00000614646.5:ENST00000555447.5:ENST00000649389.1:ENST00000652748.1:ENST00000556280.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	65	2	4.85365	5.290795	5.72794	0.0242188	0.0197641	0.106588	0.100774
chr4	128143729	128143828	2130742	0	+	0.353535	(0.33,0.36]	chr4	216434	200	INTRON	INTRON	LARP1B	ENSG00000138709.19	ENST00000326639.11:ENST00000508819.5:ENST00000649983.1:ENST00000507259.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	61	2	4.95163	5.290735	5.62984	0.0583482	0.00313405	0.155373	0.0312116
chr2	152336919	152337019	925480	0	+	0.48	(0.45,0.485]	chr2	103058	8	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.06138	5.290635	5.51989	0.0492008	0.00357389	0.146142	0.0342681
chr1	167778466	167778566	267001	0	+	0.45	(0.419,0.45]	chr1	31409	19	INTRON	INTRON	MPZL1	ENSG00000197965.12	ENST00000359523.7:ENST00000448405.5:ENST00000392121.7:ENST00000474859.5:ENST00000474729.5:ENST00000367853.3:ENST00000403379.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	64	2	4.91849	5.290305	5.66212	0.0266819	0.0174488	0.111563	0.0928044
chr7	36219688	36219788	3345652	0	+	0.45	(0.419,0.45]	chr7	323692	641	INTRON	INTRON	EEPD1	ENSG00000122547.11	ENST00000242108.9:ENST00000534978.1	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	4.91849	5.290305	5.66212	0.0266819	0.0174488	0.111563	0.0928044
chr16	81616303	81616402	6509459	0	+	0.69697	(0.58,1]	chr16	645921	54	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	126	2	3.89258	5.290285	6.68799	0.00229214	0.00130716	0.0253494	0.0220198
chr1	1063709	1063798	1376	0	+	0.629214	(0.58,1]	chr1	317	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000217801	ENSG00000217801.11	ENST00000688131.1:ENST00000456409.6:ENST00000692821.1:ENST00000394517.7:ENST00000427998.6:ENST00000685011.1:ENST00000692266.1:ENST00000412397.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	143	2	3.91831	5.290274999999999	6.66224	0.00736882	5.8343e-5	0.0571679	0.00183149
chr14	89258005	89258104	6026678	0	-	0.424242	(0.419,0.45]	chr14	591432	268	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	62	2	5.09718	5.29014	5.4831	0.0345118	0.012235	0.126025	0.0757339
chr16	25151615	25151715	6426999	0	+	0.44	(0.419,0.45]	chr16	635906	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LCMT1	ENSG00000205629.12	ENST00000380962.9:ENST00000564011.5:ENST00000380966.8:ENST00000399069.8:ENST00000577157.1:ENST00000576382.1:ENST00000576625.5:ENST00000573435.1:ENST00000572869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	62	2	5.09718	5.29014	5.4831	0.0345118	0.012235	0.126025	0.0757339
chr2	87653524	87653624	849194	0	+	0.45	(0.419,0.45]	chr2	95792	169	INTRON	INTRON	ENSG00000284879	ENSG00000284879.1	ENST00000643276.1:ENST00000646855.1	lncRNA	lncRNA	lncRNA	lncRNA	0	66	2	4.62273	5.29012	5.95751	0.103601	0.0017735	0.197541	0.02121
chr19	309520	309616	7302968	0	-	0.541667	(0.523,0.58]	chr19	752391	2	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.14602	5.290065	5.43411	0.026041	0.00734367	0.109673	0.0550721
chr20	63772779	63772879	7587121	0	-	0.57	(0.523,0.58]	chr20	793185	30	INTRON	INTRON	ZBTB46	ENSG00000130584.12	ENST00000395104.5:ENST00000245663.9:ENST00000302995.2:ENST00000650966.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	5.14602	5.290065	5.43411	0.026041	0.00734367	0.109673	0.0550721
chr6	3353758	3353858	3087027	0	-	0.57	(0.523,0.58]	chr6	299774	294	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000496753.1:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	60	2	5.14602	5.290065	5.43411	0.026041	0.00734367	0.109673	0.0550721
chr16	46680953	46681033	6581397	0	-	0.325	(0.29,0.33]	chr16	658100	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VPS35	ENSG00000069329.18	ENST00000299138.12:ENST00000647959.1:ENST00000568784.6:ENST00000569950.1:ENST00000563884.1:ENST00000568612.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	60	2	4.96914	5.28998	5.61082	0.0481918	0.00264971	0.144601	0.027979
chr16	20675022	20675122	6416207	0	+	0.57	(0.523,0.58]	chr16	634381	2	SS5_PROX	SS5_PROX:INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000614721.1:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	659	2	4.39383	5.28976	6.18569	0.00187407	6.00305e-7	0.027069	7.50698e-5
chr7	123727320	123727420	3702296	0	-	0.36	(0.33,0.36]	chr7	355615	177	INTRON	INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.20687	5.289745	5.37262	0.041040600000000003	0.00569729	0.136289	0.046716
chr10	79164530	79164630	4533002	0	+	0.53	(0.523,0.58]	chr10	432438	20	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.02927	5.289695	5.55012	0.0217068	0.0095202	0.100615	0.0650078
chr5	80440714	80440806	2465529	0	+	0.369565	(0.36,0.39]	chr5	246293	3	INTRON	INTRON	ZFYVE16	ENSG00000039319.17	ENST00000338008.9:ENST00000510158.5:ENST00000512558.5:ENST00000505560.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	138	2	4.00972	5.289569999999999	6.56942	0.00538431	0.0028904	0.0482946	0.0297318
chr3	152357606	152357706	1599276	0	+	0.4	(0.39,0.419]	chr3	168991	220	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.88366	5.28942	5.69518	0.0707789	0.00302238	0.168159	0.0305643
chr14	50441734	50441834	5975646	0	-	0.39	(0.36,0.39]	chr14	585822	9	INTRON	INTRON	MAP4K5	ENSG00000012983.12	ENST00000554990.6:ENST00000682126.1:ENST00000013125.9:ENST00000557390.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	62	2	5.04893	5.2894000000000005	5.52987	0.0287883	0.0125348	0.115991	0.0765738
chr1	174460844	174460944	281009	0	+	0.42	(0.419,0.45]	chr1	32717	663	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	5.09133	5.289395	5.48746	0.0586308	0.00532156	0.155565	0.0446153
chr21	37083549	37083647	7617514	0	+	0.44898	(0.419,0.45]	chr21	795681	21	UTR5	UTR5:EXON_MRNA:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2:ENST00000399017.6:ENST00000484047.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	61	2	5.09133	5.289395	5.48746	0.0586308	0.00532156	0.155565	0.0446153
chr8	18991288	18991388	3951913	0	-	0.42	(0.419,0.45]	chr8	377308	510	INTRON	INTRON	PSD3	ENSG00000156011.18	ENST00000327040.13:ENST00000440756.4:ENST00000521475.1:ENST00000521841.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	5.09133	5.289395	5.48746	0.0586308	0.00532156	0.155565	0.0446153
chr2	240534033	240534133	1394783	0	-	0.5	(0.485,0.523]	chr2	149044	15	INTRON	INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000405523.7:ENST00000405002.5:ENST00000484526.5:ENST00000459901.5:ENST00000496300.5:ENST00000441168.5:ENST00000443318.1:ENST00000462004.5:ENST00000418708.3:ENST00000418505.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	61	2	4.84611	5.28931	5.73251	0.0608067	0.00184599	0.158506	0.0217471
chr10	73707755	73707854	4716783	0	-	0.515152	(0.485,0.523]	chr10	449734	23	INTRON	INTRON	BMS1P4:ENSG00000272140	ENSG00000271816.1:ENSG00000272140.2	ENST00000580790.1:ENST00000415917.2:ENST00000580623.1	lncRNA	lncRNA	lncRNA	lncRNA	0	60	2	4.96239	5.289289999999999	5.61619	0.0518747	0.00247695	0.148503	0.0266492
chr16	89307736	89307836	6659889	0	-	0.52	(0.485,0.523]	chr16	666665	20	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1:ENST00000647539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	60	2	4.96239	5.289289999999999	5.61619	0.0518747	0.00247695	0.148503	0.0266492
chr2	70513858	70513958	1180951	0	-	0.52	(0.485,0.523]	chr2	128541	478	INTRON	INTRON	TGFA	ENSG00000163235.16	ENST00000295400.11:ENST00000445399.5:ENST00000418333.6:ENST00000450929.5:ENST00000444975.5:ENST00000394241.3:ENST00000460808.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	4.96239	5.289289999999999	5.61619	0.0518747	0.00247695	0.148503	0.0266492
chr15	99603308	99603408	6198714	0	+	0.3	(0.29,0.33]	chr15	609964	8	INTRON	INTRON	MEF2A	ENSG00000068305.18	ENST00000560493.5:ENST00000354410.9:ENST00000558812.5:ENST00000558856.5:ENST00000685785.1:ENST00000559036.5:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000558049.5:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1:ENST00000559903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	60	2	5.13716	5.289255	5.44135	0.0236557	0.00805226	0.105002	0.0582806
chr3	136300039	136300137	1574579	0	+	0.336735	(0.33,0.36]	chr3	167002	16	INTRON	INTRON	PCCB	ENSG00000114054.14	ENST00000251654.9:ENST00000490504.5:ENST00000483687.5:ENST00000468777.5:ENST00000462637.5:ENST00000466072.5:ENST00000484181.5:ENST00000482086.5:ENST00000471595.5:ENST00000469217.5:ENST00000478469.5:ENST00000474833.5:ENST00000475214.5:ENST00000473073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	62	2	4.83538	5.28923	5.74308	0.0679743	0.00238447	0.164413	0.0260514
chr17	81826186	81826282	6985926	0	-	0.5625	(0.523,0.58]	chr17	713906	18	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MCRIP1	ENSG00000225663.8	ENST00000455127.7:ENST00000457257.5:ENST00000538396.5:ENST00000572645.5:ENST00000576730.5:ENST00000573478.5:ENST00000574190.5:ENST00000576431.5:ENST00000575061.2	protein_coding	protein_coding	protein_coding	protein_coding	1	136	2	3.8181	5.289135	6.76017	0.0037097	0.00258949	0.0349741	0.0321874
chr19	38070655	38070755	7255904	0	+	0.36	(0.33,0.36]	chr19	743669	411	INTRON	INTRON	SIPA1L3	ENSG00000105738.11	ENST00000222345.11:ENST00000476317.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	5.15931	5.289054999999999	5.4188	0.043896	0.00513015	0.139792	0.0435186
chr18	48602137	48602237	7057286	0	+	0.36	(0.33,0.36]	chr18	720287	614	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	4.57035	5.28901	6.00767	0.0945416	0.00123038	0.188571	0.0164259
chr1	8552783	8552883	393074	0	-	0.62	(0.58,1]	chr1	45029	111	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000469251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	121	2	4.15724	5.289009999999999	6.42078	0.00230938	0.00107173	0.0302623	0.0148869
chr6	3352060	3352160	3087010	0	-	0.63	(0.58,1]	chr6	299774	277	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000496753.1:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	143	2	3.8171	5.288965	6.76083	0.0090206	4.22142e-5	0.0637469	0.0014546
chr10	26992405	26992505	4650500	0	-	0.36	(0.33,0.36]	chr10	443845	4	SS3_PROX	SS3_PROX:INTRON	ANKRD26	ENSG00000107890.17	ENST00000675439.1:ENST00000674670.1:ENST00000675936.1:ENST00000445828.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	5.25292	5.288914999999999	5.32491	0.0384256	0.00634179	0.131324	0.0501889
chr2	121479817	121479916	1262524	0	-	0.353535	(0.33,0.36]	chr2	136083	95	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	60	2	5.25292	5.288914999999999	5.32491	0.0384256	0.00634179	0.131324	0.0501889
chr6	15300544	15300644	2857052	0	+	0.35	(0.33,0.36]	chr6	279178	512	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.25292	5.288914999999999	5.32491	0.0384256	0.00634179	0.131324	0.0501889
chr16	70272862	70272959	6614508	0	-	0.463918	(0.45,0.485]	chr16	662359	5	INTRON	INTRON	AARS1	ENSG00000090861.17	ENST00000674963.1:ENST00000675643.1:ENST00000675917.1:ENST00000674691.1:ENST00000261772.13:ENST00000675569.1:ENST00000676209.1:ENST00000676211.1:ENST00000676040.1:ENST00000675953.1:ENST00000675691.1:ENST00000676004.1:ENST00000675270.1:ENST00000675403.1:ENST00000676212.1:ENST00000675045.1:ENST00000675035.1:ENST00000676168.1:ENST00000674652.1:ENST00000675133.1:ENST00000675120.1:ENST00000674811.1:ENST00000674512.1:ENST00000675853.1:ENST00000565361.3:ENST00000676247.1:ENST00000674848.1:ENST00000674962.1:ENST00000675371.1:ENST00000675986.1:ENST00000674768.1:ENST00000675297.1:ENST00000675751.1:ENST00000564359.6:ENST00000675338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	134	2	4.01376	5.28856	6.56336	0.00436001	0.0024644	0.0427656	0.0265925
chr10	18554669	18554769	4642275	0	-	0.43	(0.419,0.45]	chr10	443321	23	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	4.63955	5.2883700000000005	5.93719	0.0293406	0.0176643	0.125102	0.0909046
chr19	16368855	16368955	7343618	0	-	0.62	(0.58,1]	chr19	760668	65	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	120	2	4.33402	5.288235	6.24245	0.00334087	6.31529e-4	0.0368376	0.0102754
chr4	3366288	3366387	2005099	0	+	0.656566	(0.58,1]	chr4	204663	229	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	120	2	4.33402	5.288235	6.24245	0.00334087	6.31529e-4	0.0368376	0.0102754
chr3	12964111	12964210	1688770	0	-	0.454545	(0.45,0.485]	chr3	176520	31	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	5.0722	5.288209999999999	5.50422	0.0257993	0.00988295	0.109555	0.0664239
chr1	820712	820812	379717	0	-	0.52	(0.485,0.523]	chr1	42663	422	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000634337.2:ENST00000635509.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	61	2	5.02573	5.2881350000000005	5.55054	0.0215787	0.00985879	0.100612	0.0664239
chr19	16240220	16240320	7217006	0	+	0.5	(0.485,0.523]	chr19	737491	51	UTR3	UTR3:EXON_MRNA	AP1M1	ENSG00000072958.9	ENST00000291439.8	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.02573	5.2881350000000005	5.55054	0.0215787	0.00985879	0.100612	0.0664239
chr5	70474207	70474296	2444883	0	+	0.494382	(0.485,0.523]	chr5	243890	3	INTRON	INTRON	NAIPP1	ENSG00000250687.6	ENST00000425529.7:ENST00000504546.5:ENST00000502493.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	61	2	5.02573	5.2881350000000005	5.55054	0.0215787	0.00985879	0.100612	0.0664239
chr2	120098052	120098151	886742	0	+	0.373737	(0.36,0.39]	chr2	100342	44	INTRON	INTRON	EPB41L5	ENSG00000115109.14	ENST00000263713.10:ENST00000443902.6:ENST00000331393.8:ENST00000443124.5:ENST00000452780.1:ENST00000489017.5:ENST00000461128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	61	2	4.99672	5.2881	5.57948	0.0604395	0.00393844	0.158506	0.0367306
chr8	96583353	96583453	3869633	0	+	0.24	[0,0.29]	chr8	371299	24	INTRON	INTRON	SDC2	ENSG00000169439.12	ENST00000302190.9:ENST00000518385.5:ENST00000522911.5:ENST00000519914.5	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.1579	5.28809	5.41828	0.0269673	0.00336232	0.112113	0.0328612
chrX	48464061	48464158	8040328	0	-	0.443299	(0.419,0.45]	chrX	838611	7	INTRON	INTRON	SLC38A5	ENSG00000017483.16	ENST00000595796.5:ENST00000619100.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5:ENST00000416711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	63	2	4.81671	5.288035	5.75936	0.08258	0.00285253	0.179396	0.0294017
chr2	108587321	108587420	871481	0	+	0.434343	(0.419,0.45]	chr2	98292	66	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1:ENST00000695519.1	protein_coding	protein_coding	protein_coding	protein_coding	3	229	2	3.21726	5.287815	7.35837	0.00427176	0.00161543	0.0385319	0.0248769
chr7	2049910	2050010	3530731	0	-	0.61	(0.58,1]	chr7	340995	349	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.16453	5.287735	5.41094	0.0249802	0.00240622	0.10758	0.0261006
chr11	70815365	70815465	5062437	0	-	0.65	(0.58,1]	chr11	492713	78	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.21377	5.28765	5.36153	0.0230012	0.00273899	0.102982	0.028553
chr17	57441139	57441239	6761622	0	+	0.6	(0.58,1]	chr17	682132	4	SS5_PROX	SS5_PROX:INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	57	2	5.21377	5.28765	5.36153	0.0230012	0.00273899	0.102982	0.028553
chr19	1998846	1998945	7307782	0	-	0.69697	(0.58,1]	chr19	753493	10	INTRON	INTRON	BTBD2	ENSG00000133243.10	ENST00000255608.9:ENST00000589200.3:ENST00000590646.5:ENST00000587742.5:ENST00000588395.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	5.21377	5.28765	5.36153	0.0230012	0.00273899	0.102982	0.028553
chr2	239086787	239086877	1389543	0	-	0.588889	(0.58,1]	chr2	148609	5	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000487617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	57	2	5.21377	5.28765	5.36153	0.0230012	0.00273899	0.102982	0.028553
chr3	12964309	12964408	1688772	0	-	0.555556	(0.523,0.58]	chr3	176520	33	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	140	2	3.69181	5.28753	6.88325	0.00510333	0.00204616	0.0433857	0.0283511
chr22	28918680	28918780	7705628	0	+	0.55	(0.523,0.58]	chr22	806321	8	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7:ENST00000402174.5	protein_coding	protein_coding	protein_coding	protein_coding	4	242	2	3.66189	5.28717	6.91245	0.00193417	6.05463e-4	0.0275437	0.0100269
chr2	238199035	238199134	1388573	0	-	0.40404	(0.39,0.419]	chr2	148404	38	INTRON	INTRON	ILKAP	ENSG00000132323.9	ENST00000254654.8:ENST00000463129.5:ENST00000612675.4:ENST00000622223.4:ENST00000457149.1:ENST00000498727.5:ENST00000467133.5:ENST00000490837.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	61	2	4.99538	5.2871500000000005	5.57892	0.0613573	0.00396694	0.158506	0.0368027
chr11	63871667	63871767	4867130	0	+	0.49	(0.485,0.523]	chr11	466776	19	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5:ENST00000543674.1:ENST00000540169.5	protein_coding	protein_coding	protein_coding	protein_coding	2	343	2	4.78354	5.28689	5.79024	0.00207631	1.13852e-5	0.0287197	5.63876e-4
chrX	9609404	9609504	7843894	0	+	0.5	(0.485,0.523]	chrX	822423	485	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	174	2	3.91231	5.28659	6.66087	0.00309962	8.81743e-4	0.0355173	0.0129974
chr5	138511291	138511382	2769572	0	-	0.252747	[0,0.29]	chr5	271791	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ETF1	ENSG00000120705.13	ENST00000360541.10:ENST00000499810.6:ENST00000503014.5:ENST00000506345.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	60	2	4.82096	5.286575	5.75219	0.0456837	0.00142668	0.142336	0.0182112
chr19	29994007	29994107	7238224	0	+	0.36	(0.33,0.36]	chr19	740961	72	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5:ENST00000576442.1:ENST00000570704.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	60	2	5.27557	5.286555	5.29754	0.0360263	0.00707628	0.127853	0.0540197
chr5	14696892	14696991	2387657	0	+	0.353535	(0.33,0.36]	chr5	238863	40	UTR3	UTR3:EXON_MRNA	OTULIN	ENSG00000154124.5	ENST00000284274.5	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.27557	5.286555	5.29754	0.0360263	0.00707628	0.127853	0.0540197
chr6	149368608	149368708	3036225	0	+	0.35	(0.33,0.36]	chr6	296060	215	INTRON	INTRON	TAB2	ENSG00000055208.19	ENST00000606202.1:ENST00000636456.1:ENST00000637181.2:ENST00000367456.5:ENST00000606797.5:ENST00000538427.5:ENST00000470466.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	5.27557	5.286555	5.29754	0.0360263	0.00707628	0.127853	0.0540197
chr14	54789639	54789738	5821693	0	+	0.414141	(0.39,0.419]	chr14	569165	8	UTR3	UTR3:EXON_MRNA	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.16048	5.28651	5.41254	0.0347088	0.00999413	0.12648	0.0667545
chr2	23818049	23818149	1101612	0	-	0.4	(0.39,0.419]	chr2	120170	67	INTRON	INTRON	ATAD2B	ENSG00000119778.15	ENST00000238789.10:ENST00000381024.4:ENST00000474583.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	5.16048	5.28651	5.41254	0.0347088	0.00999413	0.12648	0.0667545
chr19	34385796	34385896	7243208	0	+	0.54	(0.523,0.58]	chr19	741718	38	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	70	2	4.5249	5.28641	6.04792	0.0266135	0.00948306	0.118113	0.0656057
chr19	19005746	19005846	7349843	0	-	0.49	(0.485,0.523]	chr19	761880	7	INTRON	INTRON	SUGP2	ENSG00000064607.17	ENST00000594773.5:ENST00000337018.10:ENST00000452918.7:ENST00000330854.15:ENST00000601879.5:ENST00000600239.5:ENST00000600377.1:ENST00000598240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	130	2	4.37429	5.28623	6.19817	0.00723584	8.506e-4	0.0565323	0.0126678
chr2	239370702	239370802	1392419	0	-	0.63	(0.58,1]	chr2	148759	174	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	57	2	5.11355	5.286135	5.45872	0.0271806	0.00211999	0.112113	0.0239744
chr7	2041817	2041917	3530650	0	-	0.64	(0.58,1]	chr7	340995	268	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.11355	5.286135	5.45872	0.0271806	0.00211999	0.112113	0.0239744
chr15	80829872	80829972	6164126	0	+	0.46	(0.45,0.485]	chr15	606634	499	INTRON	INTRON	CEMIP	ENSG00000103888.17	ENST00000220244.7:ENST00000394685.8:ENST00000356249.9	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	4.7111	5.28608	5.86106	0.0781398	0.00153611	0.175203	0.0191553
chr10	103700111	103700211	4757101	0	-	0.54	(0.523,0.58]	chr10	454791	66	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	5.16969	5.285970000000001	5.40225	0.0387762	0.00404292	0.131324	0.0371291
chr3	65795622	65795722	1813431	0	-	0.37	(0.36,0.39]	chr3	187296	751	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	137	2	4.37096	5.285905	6.20085	0.0100561	0.00114179	0.0677306	0.0156079
chr6	169575138	169575238	3303606	0	-	0.48	(0.45,0.485]	chr6	319808	22	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	133	2	4.43048	5.2858350000000005	6.14119	0.00917101	8.05025e-4	0.064285	0.0121934
chr8	133243930	133244007	4083713	0	-	0.454545	(0.45,0.485]	chr8	388207	2	SS5_PROX	SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000519278.5:ENST00000521414.5:ENST00000521026.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000523642.1:ENST00000522665.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	366	2	4.67139	5.285655	5.89992	0.0223378	2.52772e-4	0.108193	0.00900644
chr9	71756575	71756675	4314675	0	-	0.35	(0.33,0.36]	chr9	412548	58	INTRON	INTRON	CEMIP2	ENSG00000135048.14	ENST00000377044.9:ENST00000377066.9:ENST00000542935.5:ENST00000543165.1:ENST00000545719.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	134	2	4.20526	5.285355	6.36545	0.00644852	0.00163002	0.0530227	0.0200818
chr18	31499394	31499493	7038273	0	+	0.474747	(0.45,0.485]	chr18	718816	7	INTRON	INTRON	DSG2	ENSG00000046604.14	ENST00000261590.13:ENST00000585206.1:ENST00000683654.1	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.00859	5.28531	5.56203	0.052901	0.00322991	0.14912	0.0319521
chr19	32982846	32982945	7363826	0	-	0.474747	(0.45,0.485]	chr19	763279	22	INTRON	INTRON	RHPN2	ENSG00000131941.8	ENST00000254260.8:ENST00000544458.6:ENST00000588388.5:ENST00000588683.1:ENST00000592247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	60	2	5.00859	5.28531	5.56203	0.052901	0.00322991	0.14912	0.0319521
chr21	33700960	33701060	7612014	0	+	0.47	(0.45,0.485]	chr21	794967	112	INTRON	INTRON	ITSN1	ENSG00000205726.15	ENST00000399353.5:ENST00000444491.5:ENST00000470742.5:ENST00000381285.8:ENST00000381291.8:ENST00000399367.7:ENST00000399352.5:ENST00000399349.5:ENST00000399355.6:ENST00000381318.8:ENST00000451686.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	5.00859	5.28531	5.56203	0.052901	0.00322991	0.14912	0.0319521
chr5	172363069	172363169	2812939	0	-	0.46	(0.45,0.485]	chr5	275405	2	SS3_PROX	SS3_PROX:INTRON	SH3PXD2B	ENSG00000174705.13	ENST00000636523.1:ENST00000519643.5:ENST00000311601.6	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.00859	5.28531	5.56203	0.052901	0.00322991	0.14912	0.0319521
chr11	20414907	20415007	4820543	0	+	0.32	(0.29,0.33]	chr11	461689	65	INTRON	INTRON	PRMT3	ENSG00000185238.13	ENST00000330796.9:ENST00000331079.11:ENST00000437750.2:ENST00000529592.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	59	2	5.1769	5.28512	5.39334	0.035586	0.00448059	0.127529	0.0398484
chr21	43973973	43974073	7625531	0	+	0.31	(0.29,0.33]	chr21	796959	21	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000398063.6:ENST00000398058.5:ENST00000546158.1:ENST00000479117.5:ENST00000467358.5:ENST00000484865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	59	2	5.1769	5.28512	5.39334	0.035586	0.00448059	0.127529	0.0398484
chr14	71468046	71468145	5876830	0	+	0.373737	(0.36,0.39]	chr14	573694	4	INTRON	INTRON	SIPA1L1	ENSG00000197555.10	ENST00000555989.5:ENST00000553453.5:ENST00000556408.5:ENST00000381232.8:ENST00000554362.5:ENST00000556780.5:ENST00000554126.5:ENST00000555652.5:ENST00000557151.5:ENST00000557712.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	4.69932	5.285080000000001	5.87084	0.0877431	0.00196738	0.183437	0.022768300000000002
chr7	55061441	55061541	3371970	0	+	0.47	(0.45,0.485]	chr7	325289	175	INTRON	INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000463948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	5.18438	5.284705000000001	5.38503	0.0308908	0.00773818	0.119556	0.0568726
chr4	151251801	151251901	2351801	0	-	0.43	(0.419,0.45]	chr4	235107	239	INTRON	INTRON	SH3D19	ENSG00000109686.19	ENST00000604030.7:ENST00000604440.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	5.20508	5.284515	5.36395	0.0407485	0.00979452	0.135868	0.0664239
chrX	1447482	1447581	7965968	0	-	0.545455	(0.523,0.58]	chrX	834314	48	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9:ENST00000474865.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	5.1205	5.2844750000000005	5.44845	0.0416463	0.00361636	0.136301	0.0342681
chr10	35466339	35466439	4476977	0	+	0.5	(0.485,0.523]	chr10	428126	105	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	5.17012	5.284405	5.39869	0.038581	0.00421243	0.131324	0.0380601
chr16	16176086	16176186	6556627	0	-	0.5	(0.485,0.523]	chr16	653108	1	SS3_PROX	SS3_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6:ENST00000576683.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	59	2	5.17012	5.284405	5.39869	0.038581	0.00421243	0.131324	0.0380601
chr2	3299792	3299892	1081105	0	-	0.52	(0.485,0.523]	chr2	117633	171	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	59	2	5.17012	5.284405	5.39869	0.038581	0.00421243	0.131324	0.0380601
chr3	195204432	195204532	1982066	0	-	0.52	(0.485,0.523]	chr3	201700	198	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000429994.5:ENST00000418940.5:ENST00000491138.1:ENST00000476897.5:ENST00000494175.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	59	2	5.17012	5.284405	5.39869	0.038581	0.00421243	0.131324	0.0380601
chr2	164789061	164789161	1299025	0	-	0.52	(0.485,0.523]	chr2	139300	89	INTRON	INTRON	COBLL1	ENSG00000082438.18	ENST00000652658.2:ENST00000375458.6:ENST00000342193.8:ENST00000409184.8:ENST00000629362.2:ENST00000456171.5:ENST00000491126.6:ENST00000434366.5:ENST00000456693.5:ENST00000448708.5:ENST00000439313.5:ENST00000444537.5:ENST00000414843.5:ENST00000445474.2:ENST00000483743.6:ENST00000496396.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	59	2	5.21769	5.284325	5.35096	0.0359739	0.0047171	0.127853	0.0413976
chr22	36026339	36026439	7805805	0	-	0.49	(0.485,0.523]	chr22	817798	648	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.21769	5.284325	5.35096	0.0359739	0.0047171	0.127853	0.0413976
chrX	47220878	47220976	7877812	0	+	0.510204	(0.485,0.523]	chrX	825683	14	INTRON	INTRON	CDK16	ENSG00000102225.17	ENST00000517997.5:ENST00000517479.1:ENST00000457458.6:ENST00000522883.1:ENST00000520295.5:ENST00000357227.9:ENST00000519758.5:ENST00000520893.5:ENST00000517426.5:ENST00000522234.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	59	2	5.21769	5.284325	5.35096	0.0359739	0.0047171	0.127853	0.0413976
chr2	239277280	239277380	1391481	0	-	0.57	(0.523,0.58]	chr2	148740	257	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	59	2	5.26332	5.284235000000001	5.30515	0.0337698	0.00509102	0.124319	0.0433513
chr7	44529076	44529175	3585285	0	-	0.393939	(0.39,0.419]	chr7	345623	65	INTRON	INTRON	NPC1L1	ENSG00000015520.15	ENST00000381160.8:ENST00000289547.8:ENST00000546276.5	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	4.56871	5.28417	5.99963	0.0315133	0.0142473	0.127889	0.0817691
chr6	1806357	1806457	3080936	0	-	0.42	(0.419,0.45]	chr6	299482	634	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	145	2	4.659	5.284045	5.90909	0.0184411	5.72525e-4	0.0927235	0.00960668
chr17	80025600	80025700	6982172	0	-	0.67	(0.58,1]	chr17	713081	116	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7	protein_coding	protein_coding	protein_coding	protein_coding	1	144	2	3.66231	5.28404	6.90577	0.0122106	2.60624e-5	0.0752279	0.00101533
chr20	47287584	47287684	7570194	0	-	0.41	(0.39,0.419]	chr20	791047	3	SS3_PROX	SS3_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	137	2	4.05528	5.28404	6.5128	0.00608676	0.00258839	0.0515813	0.027634
chr7	103816562	103816662	3661960	0	-	0.36	(0.33,0.36]	chr7	353496	396	INTRON	INTRON	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1:ENST00000681401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	387	2	4.35848	5.283955000000001	6.20943	0.00536978	4.55431e-6	0.0481886	2.94841e-4
chr11	70763268	70763368	5061914	0	-	0.59	(0.58,1]	chr11	492701	454	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	132	2	3.68463	5.283935	6.88324	0.00404771	8.53086e-4	0.0371291	0.0173632
chr7	107605590	107605689	3445946	0	+	0.464646	(0.45,0.485]	chr7	333723	22	INTRON	INTRON	BCAP29	ENSG00000075790.12	ENST00000005259.9:ENST00000465919.5:ENST00000494086.5:ENST00000482371.5:ENST00000445771.6:ENST00000442065.5:ENST00000457837.5:ENST00000379117.6:ENST00000491150.5:ENST00000436699.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	62	2	4.77571	5.28381	5.79191	0.0719884	0.00183113	0.168159	0.0216571
chr1	113396311	113396410	211251	0	+	0.292929	(0.29,0.33]	chr1	23355	46	INTRON	INTRON	MAGI3	ENSG00000081026.19	ENST00000307546.14:ENST00000369617.8:ENST00000369615.5:ENST00000369611.4:ENST00000486456.1:ENST00000477955.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	5.1277	5.28362	5.43954	0.0382902	0.00401582	0.131324	0.0371286
chr11	68343352	68343452	4882391	0	+	0.48	(0.45,0.485]	chr11	470542	302	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	171	2	4.32183	5.283025	6.24422	0.00559992	5.58345e-4	0.0493906	0.00944382
chr13	113610395	113610495	5659104	0	+	0.62	(0.58,1]	chr13	555775	242	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	58	2	4.88945	5.282935	5.67642	0.0388928	0.00117039	0.131324	0.0157899
chr16	10414712	10414812	6384317	0	+	0.46	(0.45,0.485]	chr16	631468	1	SS5_PROX	SS5_PROX:INTRON	ATF7IP2	ENSG00000166669.14	ENST00000564797.5:ENST00000396559.5:ENST00000396560.6:ENST00000562527.5:ENST00000561932.5:ENST00000543967.5:ENST00000562102.6:ENST00000535850.5:ENST00000569900.5:ENST00000569939.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	133	2	4.4494	5.28293	6.11646	0.00956667	7.63833e-4	0.0658012	0.0117723
chr20	37507224	37507322	7559840	0	-	0.459184	(0.45,0.485]	chr20	789576	34	INTRON	INTRON	BLCAP	ENSG00000166619.15	ENST00000411780.1:ENST00000467603.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	160	2	3.71719	5.282895	6.8486	0.0163795	1.00721e-4	0.0875785	0.00275456
chr2	239283875	239283975	1391547	0	-	0.62	(0.58,1]	chr2	148740	323	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	57	2	5.0607	5.282835	5.50497	0.029633	0.00187297	0.116079	0.0219434
chr16	58161703	58161801	6598357	0	-	0.489796	(0.485,0.523]	chr16	659848	23	EXON_MRNA	EXON_MRNA:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	131	2	4.03042	5.282745	6.53507	0.00392199	0.00217615	0.0404814	0.0243911
chr7	47359002	47359102	3587381	0	-	0.53	(0.523,0.58]	chr7	346030	123	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	142	2	3.62427	5.282665	6.94106	0.0060311	0.00183008	0.0484641	0.0266451
chr2	55022791	55022891	1148255	0	-	0.4	(0.39,0.419]	chr2	125466	84	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	3	498	2	5.27323	5.28266	5.29209	0.00113612	2.20318e-5	0.0203584	9.00215e-4
chr4	22401654	22401754	2207058	0	-	0.34	(0.33,0.36]	chr4	223117	1	SS3_PROX	SS3_PROX:INTRON	ADGRA3	ENSG00000152990.14	ENST00000334304.10:ENST00000282943.9:ENST00000504617.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	5.22448	5.28265	5.34082	0.0338211	0.00791583	0.124319	0.057762
chr8	96665400	96665500	3870129	0	+	0.35	(0.33,0.36]	chr8	371341	57	INTRON	INTRON	CPQ	ENSG00000104324.16	ENST00000220763.10:ENST00000519900.1:ENST00000517742.1	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.22448	5.28265	5.34082	0.0338211	0.00791583	0.124319	0.057762
chr20	51713274	51713374	7578831	0	-	0.51	(0.485,0.523]	chr20	791884	2	SS3_PROX	SS3_PROX:INTRON	ATP9A	ENSG00000054793.14	ENST00000338821.6:ENST00000311637.9	protein_coding	protein_coding	protein_coding	protein_coding	0	83	2	4.12717	5.282575	6.43798	0.0545434	0.00469187	0.167824	0.0447158
chr1	23391988	23392087	424235	0	-	0.393939	(0.39,0.419]	chr1	49807	42	INTRON	INTRON	TCEA3	ENSG00000204219.11	ENST00000450454.7:ENST00000476978.2	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	4.63037	5.282565	5.93476	0.0963077	0.00169249	0.189169	0.0204799
chr16	72347167	72347267	6622025	0	-	0.39	(0.36,0.39]	chr16	663407	554	INTRON	INTRON	LINC01572	ENSG00000261008.8	ENST00000624829.4	lncRNA	lncRNA	lncRNA	lncRNA	0	63	2	4.92735	5.282275	5.6372	0.024533	0.0160072	0.106796	0.0894586
chr11	122744797	122744897	4958992	0	+	0.46	(0.45,0.485]	chr11	479003	173	INTRON	INTRON	UBASH3B	ENSG00000154127.10	ENST00000284273.6:ENST00000526386.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	230	2	4.91493	5.282075	5.64922	0.020599	4.9945e-5	0.0982852	0.00164756
chr2	53858237	53858336	1146579	0	-	0.363636	(0.36,0.39]	chr2	125166	30	INTRON	INTRON	ASB3:GPR75	ENSG00000115239.24:ENSG00000119737.6	ENST00000406625.6:ENST00000498475.2:ENST00000459916.1:ENST00000394705.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	189	2	2.99709	5.28199	7.56689	0.054944	1.86396e-5	0.153337	8.01857e-4
chr1	17677881	17677981	54990	0	+	0.65	(0.58,1]	chr1	5603	129	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	58	2	5.08534	5.281865	5.47839	0.0145198	0.00549379	0.0823104	0.0454065
chr7	47353626	47353725	3587327	0	-	0.414141	(0.39,0.419]	chr7	346030	69	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	137	2	4.3877	5.281835	6.17597	0.0107103	0.00109743	0.0701493	0.0151321
chr2	239348980	239349080	1392200	0	-	0.62	(0.58,1]	chr2	148752	245	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	66	2	4.58025	5.281735	5.98322	0.0172566	0.00562007	0.0923809	0.0493906
chr1	99722331	99722430	550233	0	-	0.40404	(0.39,0.419]	chr1	63129	23	INTRON	INTRON	FRRS1	ENSG00000156869.14	ENST00000646001.2:ENST00000287474.9	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	4.48504	5.2814499999999995	6.07786	0.0364893	0.012565	0.139793	0.0761905
chr4	3099694	3099794	2002826	0	+	0.44	(0.419,0.45]	chr4	204281	3	SS5_PROX	SS5_PROX:INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000680291.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	62	2	4.87598	5.28137	5.68676	0.0768574	0.00338051	0.174882	0.0328791
chr2	240521394	240521485	1394649	0	-	0.483516	(0.45,0.485]	chr2	149020	5	INTRON	INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000405523.7	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	4.5725	5.281325	5.99015	0.0926859	0.00110015	0.188571	0.015136
chr2	216099021	216099120	1023230	0	+	0.414141	(0.39,0.419]	chr2	111530	24	INTRON	INTRON	TMEM169	ENSG00000163449.11	ENST00000454545.5:ENST00000433112.5:ENST00000295658.8:ENST00000437356.7:ENST00000406027.2:ENST00000455479.5	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	4.92679	5.281319999999999	5.63585	0.025023	0.0160946	0.10758	0.0896852
chr2	241416084	241416182	1076821	0	+	0.397959	(0.39,0.419]	chr2	116969	23	INTRON	INTRON	FARP2	ENSG00000006607.14	ENST00000264042.8:ENST00000627550.2:ENST00000373287.8:ENST00000471447.5:ENST00000485051.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	63	2	4.92679	5.281319999999999	5.63585	0.025023	0.0160946	0.10758	0.0896852
chr5	108914222	108914321	2500534	0	+	0.40404	(0.39,0.419]	chr5	248753	160	INTRON	INTRON	FER	ENSG00000151422.14	ENST00000281092.9:ENST00000504143.6:ENST00000438717.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	63	2	4.92679	5.281319999999999	5.63585	0.025023	0.0160946	0.10758	0.0896852
chr19	47230828	47230928	7392390	0	-	0.71	(0.58,1]	chr19	768108	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	1	120	2	4.47001	5.2812850000000005	6.09256	0.00452436	4.15967e-4	0.0436138	0.00768537
chr12	47686579	47686679	5420622	0	-	0.26	[0,0.29]	chr12	530795	4	SS5_PROX	SS5_PROX:INTRON	RPAP3	ENSG00000005175.10	ENST00000005386.8:ENST00000432584.7:ENST00000380650.4	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.21701	5.281245	5.34548	0.0197148	0.00547146	0.0958249	0.0454065
chr20	41559228	41559327	7564230	0	-	0.40404	(0.39,0.419]	chr20	790090	75	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	136	2	4.27183	5.28087	6.28991	0.00887176	0.00148741	0.0634853	0.0186923
chr21	42849407	42849499	7675466	0	-	0.543478	(0.523,0.58]	chr21	802288	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	502	2	4.6657	5.2808399999999995	5.89598	0.00263288	1.60276e-6	0.0325876	1.43561e-4
chr1	78132710	78132809	165135	0	+	0.414141	(0.39,0.419]	chr1	18816	64	INTRON	INTRON	GIPC2	ENSG00000137960.6	ENST00000370759.4	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	4.79402	5.2807949999999995	5.76757	0.0208208	0.0204917	0.102713	0.0979776
chr10	18563163	18563263	4642360	0	-	0.41	(0.39,0.419]	chr10	443321	108	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	4.79402	5.2807949999999995	5.76757	0.0208208	0.0204917	0.102713	0.0979776
chr4	152418119	152418219	2354471	0	-	0.44	(0.419,0.45]	chr4	235290	52	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	1	138	2	4.09462	5.280749999999999	6.46688	0.00757951	0.00248506	0.0579104	0.0267262
chr4	70720066	70720166	2054524	0	+	0.51	(0.485,0.523]	chr4	209967	144	INTRON	INTRON	RUFY3	ENSG00000018189.13	ENST00000503876.5:ENST00000417478.6	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.90542	5.280715000000001	5.65601	0.0561086	0.00224147	0.154188	0.024843
chr18	74917018	74917118	7092452	0	+	0.39	(0.36,0.39]	chr18	722466	112	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.94194	5.280615	5.61929	0.064883	0.00359045	0.162218	0.0342681
chr16	8743218	8743318	6381833	0	+	0.31	(0.29,0.33]	chr16	631181	44	INTRON	INTRON	ABAT	ENSG00000183044.12	ENST00000564714.5:ENST00000268251.13:ENST00000568847.5:ENST00000561870.5:ENST00000396600.6:ENST00000566590.5:ENST00000565016.5:ENST00000567812.5:ENST00000425191.6:ENST00000569156.5:ENST00000562115.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	59	2	5.07676	5.280535	5.48431	0.0412683	0.00360762	0.136301	0.0342681
chr3	17533861	17533961	1702706	0	-	0.32	(0.29,0.33]	chr3	177752	88	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1:ENST00000444471.5:ENST00000486224.5:ENST00000433533.5:ENST00000481396.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	59	2	5.07676	5.280535	5.48431	0.0412683	0.00360762	0.136301	0.0342681
chr7	34665924	34666024	3572284	0	-	0.32	(0.29,0.33]	chr7	344517	222	INTRON	INTRON	NPSR1-AS1	ENSG00000197085.11	ENST00000419766.5:ENST00000539747.5:ENST00000439852.5:ENST00000358772.8:ENST00000431669.5	lncRNA	lncRNA	lncRNA	lncRNA	0	60	2	5.07997	5.28052	5.48107	0.0222022	0.00913217	0.101857	0.0632458
chr19	5818490	5818589	7195571	0	+	0.636364	(0.58,1]	chr19	733105	127	INTRON	INTRON	NRTN	ENSG00000171119.3	ENST00000303212.3	protein_coding	protein_coding	protein_coding	protein_coding	2	306	2	5.26466	5.2804199999999994	5.29618	3.60157e-4	3.0948e-5	0.0108631	0.00115425
chr8	140999980	141000080	4093131	0	-	0.3	(0.29,0.33]	chr8	388934	155	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	155	2	3.92432	5.28027	6.63622	0.0099499	1.65505e-4	0.0672999	0.00395841
chr8	63195622	63195722	3835299	0	+	0.41	(0.39,0.419]	chr8	368283	67	INTRON	INTRON	YTHDF3	ENSG00000185728.17	ENST00000617200.1:ENST00000623280.3:ENST00000539294.6:ENST00000621957.4:ENST00000517371.5:ENST00000615676.1:ENST00000621413.4:ENST00000621890.4:ENST00000621820.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	226	2	3.27396	5.28017	7.28638	0.0189253	4.31001e-5	0.094439	0.00147785
chr7	98242402	98242496	3647992	0	-	0.531915	(0.523,0.58]	chr7	351148	8	INTRON	INTRON	TECPR1	ENSG00000205356.10	ENST00000447648.7:ENST00000471397.1:ENST00000463648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	132	2	3.93421	5.279905	6.6256	0.00333843	0.00274644	0.0368376	0.028553
chr5	139651466	139651566	2549675	0	+	0.54	(0.523,0.58]	chr5	253167	3	SS5_PROX	SS5_PROX:INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.90222	5.2798549999999995	5.65749	0.0182707	0.0125132	0.0921579	0.0765738
chr10	74162429	74162529	4511792	0	+	0.37	(0.36,0.39]	chr10	431901	107	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000478611.2:ENST00000673352.1	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	5.10608	5.27984	5.4536	0.0321864	0.0111429	0.121593	0.071709
chr7	79418370	79418470	3626183	0	-	0.37	(0.36,0.39]	chr7	349238	23	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000628997.1:ENST00000636234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	61	2	5.10608	5.27984	5.4536	0.0321864	0.0111429	0.121593	0.071709
chr22	46844480	46844580	7745833	0	+	0.52	(0.485,0.523]	chr22	812199	465	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	5.08528	5.279764999999999	5.47425	0.0243396	0.0086528	0.106588	0.0612699
chr21	29332474	29332573	7603978	0	+	0.383838	(0.36,0.39]	chr21	794448	24	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5:ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	2	228	2	3.54333	5.2795950000000005	7.01586	0.0118216	9.30176e-5	0.0739406	0.00259457
chr2	235517029	235517129	1062766	0	+	0.53	(0.523,0.58]	chr2	115651	218	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	63	2	4.83424	5.279555	5.72487	0.0163679	0.0144272	0.0875379	0.0833845
chr12	107738882	107738982	5491898	0	-	0.5	(0.485,0.523]	chr12	540131	1	SS5_PROX	SS5_PROX:INTRON	PRDM4	ENSG00000110851.12	ENST00000228437.10:ENST00000550376.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	59	2	5.25048	5.279425	5.30837	0.0314138	0.0059614	0.12069	0.0479866
chr3	32273105	32273205	1436051	0	+	0.5	(0.485,0.523]	chr3	153202	336	INTRON	INTRON	CMTM8	ENSG00000170293.9	ENST00000458535.6:ENST00000307526.4	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.25048	5.279425	5.30837	0.0314138	0.0059614	0.12069	0.0479866
chr7	1011041	1011141	3526333	0	-	0.52	(0.485,0.523]	chr7	340572	5	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	5.25048	5.279425	5.30837	0.0314138	0.0059614	0.12069	0.0479866
chr9	69053660	69053760	4163992	0	+	0.51	(0.485,0.523]	chr9	395732	4	SS5_PROX	SS5_PROX:INTRON	FXN	ENSG00000165060.15	ENST00000644653.1:ENST00000484259.3:ENST00000396366.6:ENST00000377270.8:ENST00000498653.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	59	2	5.25048	5.279425	5.30837	0.0314138	0.0059614	0.12069	0.0479866
chr6	137202501	137202600	3272517	0	-	0.242424	[0,0.29]	chr6	316753	11	INTRON	INTRON	IFNGR1	ENSG00000027697.16	ENST00000458076.6:ENST00000696695.1:ENST00000367739.9:ENST00000696694.1:ENST00000645045.1:ENST00000643119.1:ENST00000696693.1:ENST00000414770.6:ENST00000696696.1:ENST00000644894.1:ENST00000646898.1:ENST00000646036.1:ENST00000645753.1:ENST00000642390.1:ENST00000647124.1:ENST00000696697.1:ENST00000696698.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	59	2	4.88286	5.27927	5.67568	0.041613	0.00174548	0.136301	0.0210473
chr12	26989651	26989750	5402151	0	-	0.454545	(0.45,0.485]	chr12	528896	57	INTRON	INTRON	TM7SF3	ENSG00000064115.11	ENST00000343028.9:ENST00000545344.5:ENST00000545303.5:ENST00000535260.5:ENST00000543882.5:ENST00000542667.5:ENST00000535819.1:ENST00000543655.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	65	2	4.74641	5.279255	5.8121	0.0193126	0.0158765	0.0994526	0.0859576
chr3	111198537	111198637	1532915	0	+	0.39	(0.36,0.39]	chr3	162895	51	INTRON	INTRON	NECTIN3	ENSG00000177707.11	ENST00000485506.1	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.82572	5.279115	5.73251	0.0751666	0.0027486	0.172839	0.028553
chr9	61970120	61970220	4158027	0	+	0.39	(0.36,0.39]	chr9	395242	3	SS3_PROX	SS3_PROX:INTRON	FAM27C	ENSG00000231527.7	ENST00000653087.1:ENST00000660875.1:ENST00000670686.1:ENST00000443347.6:ENST00000668789.1:ENST00000657353.1:ENST00000669747.1:ENST00000662964.1:ENST00000650759.1:ENST00000656926.1:ENST00000655025.1:ENST00000655049.1:ENST00000659299.1:ENST00000651201.1:ENST00000651799.1	lncRNA	lncRNA	lncRNA	lncRNA	0	62	2	4.82572	5.279115	5.73251	0.0751666	0.0027486	0.172839	0.028553
chr11	112252283	112252382	4942387	0	+	0.424242	(0.419,0.45]	chr11	476600	144	INTRON	INTRON	PTS	ENSG00000150787.8	ENST00000531673.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	61	2	4.98767	5.27909	5.57051	0.0669167	0.00441471	0.16272	0.0393688
chrX	20136305	20136385	7994171	0	-	0.4375	(0.419,0.45]	chrX	836221	1	EXON_SMALL	EXON_SMALL:SS3_PROX:INTRON	EIF1AX:ENSG00000201592	ENSG00000173674.11:ENSG00000201592.1	ENST00000379607.10:ENST00000379593.1:ENST00000364722.1	snoRNA	snoRNA	snoRNA:protein_coding	snoRNA:protein_coding	0	61	2	4.98767	5.27909	5.57051	0.0669167	0.00441471	0.16272	0.0393688
chr2	172034345	172034445	954947	0	+	0.39	(0.36,0.39]	chr2	104934	121	INTRON	INTRON	METAP1D	ENSG00000172878.14	ENST00000493035.5:ENST00000315796.5:ENST00000493742.1:ENST00000491440.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	5.14958	5.278935000000001	5.40829	0.0493212	0.00581205	0.146207	0.0472624
chr2	215329532	215329630	1022834	0	+	0.367347	(0.36,0.39]	chr2	111457	22	INTRON	INTRON	ATIC	ENSG00000138363.15	ENST00000236959.14:ENST00000443953.5:ENST00000435675.5:ENST00000427397.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	66	2	4.56076	5.278915	5.99707	0.103289	0.00143949	0.197541	0.0183435
chr6	129672076	129672175	3259536	0	-	0.525253	(0.523,0.58]	chr6	315424	297	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	1	159	2	3.51606	5.27887	7.04168	0.0216194	4.24161e-5	0.100615	0.00145737
chr6	140862019	140862118	3280357	0	-	0.444444	(0.419,0.45]	chr6	317164	33	INTRON	INTRON	ENSG00000234147	ENSG00000234147.3	ENST00000650553.2:ENST00000692940.1:ENST00000683641.1:ENST00000682196.1:ENST00000684320.1:ENST00000683889.1:ENST00000683062.1:ENST00000682608.1:ENST00000455011.2:ENST00000682812.1:ENST00000683340.1:ENST00000683841.1:ENST00000683589.1:ENST00000684268.1:ENST00000683480.1	lncRNA	lncRNA	lncRNA	lncRNA	5	764	2	4.16052	5.27886	6.3972	2.30991e-4	1.5496e-4	0.00693487	0.00499664
chr19	6229970	6230069	7321311	0	-	0.69697	(0.58,1]	chr19	756087	25	INTRON	INTRON	MLLT1	ENSG00000130382.9	ENST00000252674.9	protein_coding	protein_coding	protein_coding	protein_coding	2	160	2	4.07527	5.27881	6.48235	0.00202884	3.47904e-4	0.0283135	0.00674233
chr14	63605163	63605263	5993071	0	-	0.38	(0.36,0.39]	chr14	587828	48	INTRON	INTRON	WDR89	ENSG00000140006.12	ENST00000620954.2:ENST00000394942.2:ENST00000267522.7:ENST00000554717.1	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.24317	5.27879	5.31441	0.0433841	0.00715023	0.138813	0.0541241
chr2	3288015	3288115	1080987	0	-	0.65	(0.58,1]	chr2	117633	53	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	120	2	4.49148	5.278735	6.06599	0.00477081	3.89116e-4	0.0450109	0.00732219
chr17	57463811	57463910	6761850	0	+	0.414141	(0.39,0.419]	chr17	682137	187	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	60	2	5.19579	5.27867	5.36155	0.0469937	0.00648185	0.143232	0.0503748
chr2	26363403	26363502	732905	0	+	0.40404	(0.39,0.419]	chr2	85347	167	INTRON	INTRON	SELENOI	ENSG00000138018.19	ENST00000442141.5:ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.19579	5.27867	5.36155	0.0469937	0.00648185	0.143232	0.0503748
chr2	78087944	78088044	1208329	0	-	0.4	(0.39,0.419]	chr2	130071	1477	INTRON	INTRON	ENSG00000227088	ENSG00000227088.2	ENST00000667782.1	lncRNA	lncRNA	lncRNA	lncRNA	0	60	2	5.19579	5.27867	5.36155	0.0469937	0.00648185	0.143232	0.0503748
chr5	61143929	61144028	2427723	0	+	0.40404	(0.39,0.419]	chr5	241943	180	INTRON	INTRON	NDUFAF2	ENSG00000164182.12	ENST00000678452.1:ENST00000677756.1:ENST00000296597.10:ENST00000511107.1:ENST00000502658.1:ENST00000512623.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	60	2	5.19579	5.27867	5.36155	0.0469937	0.00648185	0.143232	0.0503748
chr13	97363235	97363335	5632223	0	+	0.45	(0.419,0.45]	chr13	553214	52	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000449284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	170	2	3.521	5.278645	7.03629	0.026666	1.03265e-4	0.111563	0.00280222
chr1	235991058	235991158	692997	0	-	0.6	(0.58,1]	chr1	81530	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NID1	ENSG00000116962.15	ENST00000366595.7:ENST00000264187.7	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.89007	5.278525	5.66698	0.0102927	0.00872525	0.0684871	0.0612699
chr19	1167495	1167594	7305727	0	-	0.626263	(0.58,1]	chr19	753054	125	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5:ENST00000587655.2	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.89007	5.278525	5.66698	0.0102927	0.00872525	0.0684871	0.0612699
chr9	133691222	133691319	4427475	0	-	0.690722	(0.58,1]	chr9	423045	3	INTRON	INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000371868.5	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.89007	5.278525	5.66698	0.0102927	0.00872525	0.0684871	0.0612699
chr15	57165103	57165203	6112817	0	+	0.42	(0.419,0.45]	chr15	601631	303	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1:ENST00000561346.5:ENST00000559216.5:ENST00000560887.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	61	2	5.15214	5.278455	5.40477	0.0385125	0.0109324	0.131324	0.0706366
chr2	73852934	73853034	833282	0	+	0.45	(0.419,0.45]	chr2	94129	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STAMBP	ENSG00000124356.17	ENST00000339566.7:ENST00000684095.1:ENST00000682847.1:ENST00000683317.1:ENST00000683036.1:ENST00000682157.1:ENST00000683349.1:ENST00000684337.1:ENST00000683247.1:ENST00000682683.1:ENST00000682329.1:ENST00000683149.1:ENST00000682851.1:ENST00000394070.7:ENST00000683728.1:ENST00000409707.6:ENST00000683518.1:ENST00000684585.1:ENST00000683434.1:ENST00000682352.1:ENST00000684697.1:ENST00000682592.1:ENST00000683718.1:ENST00000682423.1:ENST00000478946.2:ENST00000684200.1:ENST00000684355.1:ENST00000684774.1:ENST00000536064.2:ENST00000683465.1:ENST00000684716.1:ENST00000683016.1:ENST00000684174.1:ENST00000684703.1:ENST00000682799.1:ENST00000682998.1:ENST00000682379.1:ENST00000684312.1:ENST00000683852.1:ENST00000684321.1:ENST00000394073.6:ENST00000684671.1:ENST00000682848.1:ENST00000683877.1:ENST00000683530.1:ENST00000683027.1:ENST00000683304.1:ENST00000682784.1:ENST00000683205.1:ENST00000682351.1:ENST00000683818.1:ENST00000684426.1:ENST00000683582.1:ENST00000683417.1:ENST00000683594.1:ENST00000682387.1:ENST00000682747.1:ENST00000682105.1:ENST00000683928.1:ENST00000683391.1:ENST00000684758.1:ENST00000682558.1:ENST00000683902.1:ENST00000432295.7:ENST00000486458.2:ENST00000683314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	61	2	5.15214	5.278455	5.40477	0.0385125	0.0109324	0.131324	0.0706366
chr2	239989077	239989170	1393717	0	-	0.419355	(0.419,0.45]	chr2	148853	6	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	61	2	5.15214	5.278455	5.40477	0.0385125	0.0109324	0.131324	0.0706366
chr2	7038930	7039029	712661	0	+	0.484848	(0.45,0.485]	chr2	83316	84	INTRON	INTRON	RNF144A	ENSG00000151692.15	ENST00000320892.11:ENST00000467276.5:ENST00000432850.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	4.83755	5.278415000000001	5.71928	0.06646	0.00219685	0.162385	0.0245167
chr2	186127011	186127110	1338573	0	-	0.50505	(0.485,0.523]	chr2	142311	81	INTRON	INTRON	LINC01473	ENSG00000237877.7	ENST00000658984.1:ENST00000658990.1:ENST00000655126.1:ENST00000667839.1:ENST00000670612.1:ENST00000668985.1:ENST00000661574.1:ENST00000666677.1:ENST00000665629.1:ENST00000671116.1:ENST00000419719.2:ENST00000667056.1:ENST00000671599.1	lncRNA	lncRNA	lncRNA	lncRNA	2	213	2	3.335	5.278385	7.22177	0.0141019	2.58512e-5	0.0812274	0.0010125
chr15	98721758	98721858	6194062	0	+	0.4	(0.39,0.419]	chr15	609659	133	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	165	2	3.69844	5.278165	6.85789	0.0188868	1.46825e-4	0.0942524	0.00363163
chr16	16242167	16242266	6408075	0	+	0.414141	(0.39,0.419]	chr16	633230	19	INTRON	INTRON	NOMO3	ENSG00000103226.19	ENST00000676846.1:ENST00000399336.9:ENST00000677912.1:ENST00000576589.1:ENST00000677777.1:ENST00000678192.1:ENST00000678393.1:ENST00000678538.1:ENST00000679086.1:ENST00000574894.2:ENST00000678080.1:ENST00000677260.1:ENST00000676550.1:ENST00000263012.10:ENST00000575225.5:ENST00000677781.1:ENST00000677163.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	62	2	4.82439	5.2781649999999996	5.73194	0.0762206	0.00276973	0.174484	0.0286873
chr7	79325968	79326068	3625256	0	-	0.4	(0.39,0.419]	chr7	349228	3172	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000628997.1:ENST00000636424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	62	2	4.82439	5.2781649999999996	5.73194	0.0762206	0.00276973	0.174484	0.0286873
chr7	130122990	130123086	3480101	0	+	0.40625	(0.39,0.419]	chr7	336312	4	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.82439	5.2781649999999996	5.73194	0.0762206	0.00276973	0.174484	0.0286873
chr19	23324774	23324873	7358031	0	-	0.363636	(0.36,0.39]	chr19	762771	143	INTRON	INTRON	ZNF91	ENSG00000167232.14	ENST00000596528.1:ENST00000596989.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	62	2	4.98942	5.2779799999999994	5.56654	0.0272676	0.0141427	0.112327	0.0833845
chr17	7176829	7176881	6847840	0	-	0.519231	(0.485,0.523]	chr17	693460	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1:ENST00000573596.1:ENST00000573083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	622	2	5.03496	5.277925	5.52089	5.00116e-4	5.94629e-6	0.0129939	3.57135e-4
chr17	17716831	17716930	6689203	0	+	0.626263	(0.58,1]	chr17	671338	319	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	5.00585	5.277815	5.54978	0.0323732	0.00165911	0.121593	0.0202545
chr5	78641909	78642009	2703308	0	-	0.36	(0.33,0.36]	chr5	266666	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LHFPL2	ENSG00000145685.14	ENST00000380345.7:ENST00000503686.5:ENST00000512759.5:ENST00000515349.1:ENST00000514587.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	5.00642	5.277755	5.54909	0.0542065	0.00379428	0.151733	0.0355124
chr3	31856096	31856195	1729149	0	-	0.454545	(0.45,0.485]	chr3	179034	47	INTRON	INTRON	OSBPL10	ENSG00000144645.15	ENST00000396556.7:ENST00000438237.6:ENST00000480671.5:ENST00000485205.5:ENST00000467955.5:ENST00000466604.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	5.12938	5.2776250000000005	5.42587	0.0290571	0.00873194	0.116079	0.0612699
chr19	56839884	56839982	7410720	0	-	0.591837	(0.58,1]	chr19	771674	22	INTRON	INTRON	ZIM2:PEG3	ENSG00000269699.7:ENSG00000198300.14	ENST00000593711.6:ENST00000689654.1:ENST00000629319.3:ENST00000599935.5:ENST00000693159.1:ENST00000650111.1:ENST00000648694.1:ENST00000326441.15:ENST00000649233.1:ENST00000649680.1:ENST00000649876.1:ENST00000650632.1:ENST00000650102.1:ENST00000649735.1:ENST00000647621.1:ENST00000598410.5:ENST00000593695.5:ENST00000599577.5:ENST00000594389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	61	2	4.81862	5.27732	5.73602	0.0102696	0.00904546	0.0678072	0.0637469
chr13	63927553	63927653	5723963	0	-	0.41	(0.39,0.419]	chr13	561413	734	INTRON	INTRON	LINC00355	ENSG00000227674.3	ENST00000650541.1	lncRNA	lncRNA	lncRNA	lncRNA	1	165	2	3.8362	5.27725	6.7183	0.0150537	2.16497e-4	0.0840434	0.00477728
chr10	132754272	132754372	4619015	0	+	0.63	(0.58,1]	chr10	441201	4	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	5.20223	5.277185	5.35214	0.0181452	0.00411607	0.0921579	0.0374453
chr17	80876726	80876826	6812238	0	+	0.71	(0.58,1]	chr17	687891	185	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.20223	5.277185	5.35214	0.0181452	0.00411607	0.0921579	0.0374453
chr2	239085626	239085726	1389531	0	-	0.5	(0.485,0.523]	chr2	148606	4	PRIMIRNA	PRIMIRNA:INTRON	HDAC4:MIR4441	ENSG00000068024.18:ENSG00000264810.1	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000487617.5:ENST00000582623.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	1	129	2	4.17794	5.277185	6.37643	0.0052506	0.0014639	0.0476984	0.0185482
chr18	77119223	77119323	7181513	0	-	0.61	(0.58,1]	chr18	730186	136	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1:ENST00000583798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	145	2	4.18524	5.27717	6.3691	0.00425781	1.49225e-4	0.0422596	0.00367368
chr2	235852485	235852585	1066136	0	+	0.41	(0.39,0.419]	chr2	115719	4	SS3_PROX	SS3_PROX:INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	62	2	4.98886	5.27702	5.56518	0.027797	0.0142222	0.112962	0.0833845
chr22	45291308	45291406	7738862	0	+	0.540816	(0.523,0.58]	chr22	811371	18	INTRON	INTRON	UPK3A	ENSG00000100373.10	ENST00000216211.9:ENST00000396082.2	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.96714	5.27697	5.5868	0.020474	0.0108948	0.0979776	0.0706366
chr8	22996479	22996577	3772596	0	+	0.530612	(0.523,0.58]	chr8	363192	2	INTRON	INTRON	RHOBTB2	ENSG00000008853.18	ENST00000519685.5:ENST00000524077.5:ENST00000518534.1:ENST00000522948.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	4.96714	5.27697	5.5868	0.020474	0.0108948	0.0979776	0.0706366
chr9	134334843	134334943	4260771	0	+	0.58	(0.523,0.58]	chr9	406311	78	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	61	2	4.96714	5.27697	5.5868	0.020474	0.0108948	0.0979776	0.0706366
chr2	62730894	62730994	814206	0	+	0.43	(0.419,0.45]	chr2	92078	232	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000449820.5:ENST00000426940.5:ENST00000413434.5:ENST00000405482.5:ENST00000427809.5:ENST00000494958.1:ENST00000472809.5:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	185	2	3.83963	5.276945	6.71426	0.0050028	0.00152782	0.0463896	0.0191213
chr21	38806808	38806908	7620610	0	+	0.39	(0.36,0.39]	chr21	796136	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ETS2	ENSG00000157557.13	ENST00000360214.8:ENST00000665212.1:ENST00000667466.1:ENST00000360938.8:ENST00000432278.5:ENST00000666778.1	protein_coding	protein_coding	protein_coding	protein_coding	2	412	2	4.93861	5.27687	5.61513	5.73435e-4	2.41059e-4	0.0140249	0.00518041
chr10	47532781	47532881	4680510	0	-	0.5	(0.485,0.523]	chr10	446443	89	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	1	130	2	4.45366	5.27685	6.10004	0.00860355	6.79828e-4	0.0623467	0.0108531
chr19	45624218	45624318	7388938	0	-	0.39	(0.36,0.39]	chr19	767279	1	SS5_PROX	SS5_PROX:INTRON	EML2	ENSG00000125746.18	ENST00000589876.5:ENST00000587152.6:ENST00000245925.8:ENST00000586195.5:ENST00000588308.5:ENST00000536630.5:ENST00000590819.5:ENST00000399594.7:ENST00000590575.5:ENST00000588272.1:ENST00000588000.5:ENST00000588610.5:ENST00000588496.5:ENST00000586902.5:ENST00000590580.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	60	2	5.1004	5.276714999999999	5.45303	0.0526991	0.00525731	0.14912	0.044445
chr7	139643312	139643412	3722578	0	-	0.38	(0.36,0.39]	chr7	357498	112	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.1004	5.276714999999999	5.45303	0.0526991	0.00525731	0.14912	0.044445
chr10	103699811	103699911	4757098	0	-	0.55	(0.523,0.58]	chr10	454791	63	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	5.01677	5.27671	5.53665	0.0482765	0.00291382	0.144601	0.0298557
chr12	132954248	132954347	5542074	0	-	0.535354	(0.523,0.58]	chr12	547064	56	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	59	2	5.01677	5.27671	5.53665	0.0482765	0.00291382	0.144601	0.0298557
chr2	239291469	239291569	1391623	0	-	0.53	(0.523,0.58]	chr2	148740	399	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	59	2	5.01677	5.27671	5.53665	0.0482765	0.00291382	0.144601	0.0298557
chr20	32839956	32840056	7457233	0	+	0.56	(0.523,0.58]	chr20	776341	1	SS5_PROX	SS5_PROX:INTRON	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.01677	5.27671	5.53665	0.0482765	0.00291382	0.144601	0.0298557
chr5	129990297	129990397	2530390	0	+	0.51	(0.485,0.523]	chr5	251055	154	INTRON	INTRON	CHSY3	ENSG00000198108.4	ENST00000305031.5:ENST00000507545.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	4.581	5.276605	5.97221	0.085711	9.86421e-4	0.181766	0.0140716
chr5	123023784	123023874	2750870	0	-	0.444444	(0.419,0.45]	chr5	269505	7	UTR3	UTR3:EXON_MRNA	PPIC	ENSG00000168938.6	ENST00000306442.5	protein_coding	protein_coding	protein_coding	protein_coding	1	166	2	5.10846	5.276465	5.44447	0.0364384	1.6519e-4	0.128173	0.00395313
chr2	152337019	152337119	925481	0	+	0.54	(0.523,0.58]	chr2	103058	9	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	1	131	2	4.55836	5.2763349999999996	5.99431	0.0104033	4.89235e-4	0.0686837	0.0086136
chr17	81139498	81139597	6982897	0	-	0.666667	(0.58,1]	chr17	713268	46	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	59	2	4.95814	5.276305000000001	5.59447	0.0117666	0.0074469	0.0737098	0.0553519
chr9	129609079	129609178	4250921	0	+	0.656566	(0.58,1]	chr9	404740	3	UTR5	UTR5:EXON_MRNA	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	4.95814	5.276305000000001	5.59447	0.0117666	0.0074469	0.0737098	0.0553519
chr18	9157532	9157632	7015549	0	+	0.32	(0.29,0.33]	chr18	716571	193	INTRON	INTRON	ANKRD12	ENSG00000101745.17	ENST00000585234.5:ENST00000262126.9:ENST00000577992.1:ENST00000540578.6:ENST00000581635.5:ENST00000400020.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	61	2	4.95831	5.276185	5.59406	0.0184845	0.0118616	0.0928429	0.0746945
chr3	88088695	88088795	1512317	0	+	0.31	(0.29,0.33]	chr3	161123	19	INTRON	INTRON	ZNF654	ENSG00000175105.8	ENST00000636215.2:ENST00000473136.4:ENST00000623596.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	61	2	4.95831	5.276185	5.59406	0.0184845	0.0118616	0.0928429	0.0746945
chr3	167742732	167742832	1622659	0	+	0.32	(0.29,0.33]	chr3	170036	62	INTRON	INTRON	SERPINI1	ENSG00000163536.13	ENST00000472941.5:ENST00000446050.7:ENST00000295777.9:ENST00000472747.2	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.95831	5.276185	5.59406	0.0184845	0.0118616	0.0928429	0.0746945
chr19	17482981	17483081	7220762	0	+	0.44	(0.419,0.45]	chr19	738259	119	INTRON	INTRON	SLC27A1	ENSG00000130304.17	ENST00000600277.5:ENST00000598424.5:ENST00000252595.12:ENST00000599380.5:ENST00000600297.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	140	2	3.90437	5.276085	6.6478	0.00559992	0.00396391	0.0493906	0.0368027
chr6	169620952	169621052	3304066	0	-	0.43	(0.419,0.45]	chr6	319826	69	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	64	2	4.69033	5.276085	5.86184	0.0958674	0.00223565	0.189038	0.024843
chr1	225878451	225878540	674429	0	-	0.561798	(0.523,0.58]	chr1	79330	5	INTRON	INTRON	TMEM63A	ENSG00000196187.12	ENST00000366835.8	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	4.7629	5.276070000000001	5.78924	0.0167014	0.0147166	0.0917029	0.0826843
chr16	29265615	29265715	6433493	0	+	0.56	(0.523,0.58]	chr16	636745	135	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	64	2	4.7629	5.276070000000001	5.78924	0.0167014	0.0147166	0.0917029	0.0826843
chr5	14819941	14820040	2613820	0	-	0.353535	(0.33,0.36]	chr5	260341	319	INTRON	INTRON	ANKH	ENSG00000154122.14	ENST00000284268.8:ENST00000513115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	64	2	4.80497	5.27595	5.74693	0.0188359	0.0181681	0.0980631	0.0921579
chr6	36066606	36066705	2904687	0	+	0.30303	(0.29,0.33]	chr6	284907	69	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000622903.4:ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5:ENST00000472333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	59	2	5.02395	5.275835000000001	5.52772	0.0445554	0.00324812	0.140478	0.0319647
chr6	10589613	10589713	2850443	0	+	0.4	(0.39,0.419]	chr6	278695	23	INTRON	INTRON	GCNT2	ENSG00000111846.20	ENST00000410107.5:ENST00000489225.5:ENST00000397423.7:ENST00000495262.7:ENST00000475577.5:ENST00000489819.5:ENST00000474518.1:ENST00000379597.7:ENST00000485764.1:ENST00000461400.1:ENST00000316170.9:ENST00000459872.1:ENST00000265012.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	60	2	5.09906	5.27576	5.45246	0.0535378	0.00529344	0.150319	0.044517
chr3	71173246	71173345	1827157	0	-	0.414141	(0.39,0.419]	chr3	188150	412	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648426.1:ENST00000498215.7:ENST00000484350.5:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000468577.6:ENST00000649513.1:ENST00000649431.2:ENST00000647614.1:ENST00000649760.1:ENST00000650295.1:ENST00000648895.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	168	2	3.46347	5.275729999999999	7.08799	0.0275016	7.64755e-5	0.112782	0.00224403
chr19	15641913	15642013	7215372	0	+	0.55	(0.523,0.58]	chr19	737132	3	SS5_PROX	SS5_PROX:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	78	2	4.23973	5.27572	6.31171	0.0444247	0.00594629	0.153511	0.0506158
chr2	239345084	239345184	1392161	0	-	0.56	(0.523,0.58]	chr2	148752	206	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	238	2	3.20519	5.27562	7.34605	0.00226081	8.24125e-4	0.0250524	0.0170688
chr6	95604059	95604155	2954168	0	+	0.395833	(0.39,0.419]	chr6	290812	7	EXON_MRNA	EXON_MRNA:INTRON	MANEA	ENSG00000172469.17	ENST00000682076.1:ENST00000683151.1:ENST00000358812.9:ENST00000682663.1:ENST00000684753.1:ENST00000474553.1:ENST00000684164.1:ENST00000682417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	60	2	5.26451	5.27547	5.28643	0.041475	0.00800901	0.136301	0.0580954
chr17	43545714	43545814	6739022	0	+	0.7	(0.58,1]	chr17	678633	5	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	5	543	2	4.56694	5.2750900000000005	5.98324	7.03658e-5	1.79013e-5	0.0047059	7.78672e-4
chr16	22425312	22425412	6566817	0	-	0.6	(0.58,1]	chr16	655121	27	INTRON	INTRON	CDR2:RRN3P3	ENSG00000140743.8:ENSG00000257122.5	ENST00000564542.5:ENST00000563573.5:ENST00000569045.1:ENST00000551766.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	0	62	2	4.54927	5.27503	6.00079	0.0643046	4.59827e-4	0.161669	0.00821903
chr12	64631502	64631602	5250575	0	+	0.34	(0.33,0.36]	chr12	511993	85	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	62	2	4.93777	5.274940000000001	5.61211	0.022456	0.0144674	0.102751	0.0833845
chr7	47357708	47357808	3587368	0	-	0.45	(0.419,0.45]	chr7	346030	110	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	4.85365	5.274525000000001	5.6954	0.0254103	0.0197641	0.108573	0.100774
chr10	35466040	35466140	4476974	0	+	0.43	(0.419,0.45]	chr10	428126	102	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	68	2	4.63955	5.2743199999999995	5.90909	0.0293406	0.0184411	0.125102	0.0927235
chr3	23845685	23845785	1431189	0	+	0.39	(0.36,0.39]	chr3	152792	338	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	137	2	4.44426	5.2743199999999995	6.10438	0.0117824	9.39802e-4	0.073726	0.0135546
chr1	9105059	9105134	396321	0	-	0.52	(0.485,0.523]	chr1	45204	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GPR157	ENSG00000180758.12	ENST00000377411.5:ENST00000465853.1	protein_coding	protein_coding	protein_coding	protein_coding	0	78	2	4.23628	5.27421	6.31214	0.045492200000000003	0.00589975	0.154539	0.0506158
chr16	14435976	14436068	6552196	0	-	0.467391	(0.45,0.485]	chr16	652241	4	UTR3	UTR3:EXON_MRNA	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	163	2	3.44977	5.27395	7.09813	0.0255605	4.79692e-5	0.109062	0.00159846
chr9	130809353	130809453	4255183	0	+	0.46	(0.45,0.485]	chr9	405261	945	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.16149	5.27351	5.38553	0.0427653	0.00490471	0.13762	0.0422077
chr1	17669290	17669390	54904	0	+	0.47	(0.45,0.485]	chr1	5603	43	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	59	2	5.20906	5.273435	5.33781	0.0399616	0.0054758	0.133954	0.0454065
chr17	890989	891089	6825740	0	-	0.46	(0.45,0.485]	chr17	690050	270	INTRON	INTRON	NXN	ENSG00000167693.17	ENST00000336868.8:ENST00000575455.5:ENST00000577098.5:ENST00000571338.1:ENST00000575171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	59	2	5.20906	5.273435	5.33781	0.0399616	0.0054758	0.133954	0.0454065
chr1	204083175	204083275	322151	0	+	0.5	(0.485,0.523]	chr1	36272	46	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1:ENST00000528591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	130	2	4.03042	5.273295	6.51617	0.00406194	0.00217615	0.0413652	0.0243911
chr14	68951836	68951936	5999872	0	-	0.42	(0.419,0.45]	chr14	588759	44	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6:ENST00000683261.1:ENST00000553370.5:ENST00000682602.1:ENST00000556571.1:ENST00000553659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	63	2	4.91849	5.27327	5.62805	0.0280406	0.0174488	0.113651	0.0928044
chr11	68265342	68265440	5057273	0	-	0.530612	(0.523,0.58]	chr11	492361	11	INTRON	INTRON	C11orf24	ENSG00000171067.11	ENST00000304271.11:ENST00000533310.5:ENST00000530166.5:ENST00000527280.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	69	2	4.5249	5.273135	6.02137	0.0266135	0.00992924	0.118113	0.0671959
chr9	129618522	129618621	4251016	0	+	0.414141	(0.39,0.419]	chr9	404743	90	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	1	166	2	3.96195	5.272975	6.584	0.0121905	3.12789e-4	0.0751822	0.00625974
chr10	5436121	5436220	4439663	0	+	0.444444	(0.419,0.45]	chr10	424995	65	INTRON	INTRON	NET1	ENSG00000173848.19	ENST00000355029.9	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	4.78575	5.27275	5.75975	0.0231013	0.0224633	0.108193	0.102982
chr16	78858035	78858135	6502999	0	+	0.24	[0,0.29]	chr16	645717	777	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	4.75627	5.272625	5.78898	0.050276	0.00129345	0.148161	0.017071
chr20	41558929	41559029	7564227	0	-	0.38	(0.36,0.39]	chr20	790090	72	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	5.214	5.27253	5.33106	0.0383628	0.00887999	0.131324	0.0618231
chr7	6692903	6693003	3542639	0	-	0.37	(0.36,0.39]	chr7	342302	2	SS3_PROX	SS3_PROX:INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000404360.5:ENST00000342651.9	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.214	5.27253	5.33106	0.0383628	0.00887999	0.131324	0.0618231
chr13	75391490	75391590	5727099	0	-	0.45	(0.419,0.45]	chr13	561722	143	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	1	138	2	4.00263	5.27231	6.54199	0.00668959	0.00312051	0.0541558	0.0311915
chr10	98421868	98421968	4744442	0	-	0.41	(0.39,0.419]	chr10	453146	1	SS5_PROX	SS5_PROX:INTRON	HPS1	ENSG00000107521.20	ENST00000361490.9:ENST00000325103.10:ENST00000467246.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	5.04815	5.272005	5.49586	0.0572698	0.00479873	0.154343	0.0416285
chr20	44404275	44404374	7482958	0	+	0.454545	(0.45,0.485]	chr20	779645	10	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	658	2	4.5077	5.271929999999999	6.03616	0.0016923	1.37435e-6	0.0254927	1.29092e-4
chr13	112974137	112974236	5655362	0	+	0.484848	(0.45,0.485]	chr13	555120	43	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	4.67139	5.27191	5.87243	0.0223378	0.0143887	0.108193	0.0821732
chr3	3739742	3739842	1670538	0	-	0.46	(0.45,0.485]	chr3	175252	369	INTRON	INTRON	SUMF1	ENSG00000144455.14	ENST00000470751.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	66	2	4.67139	5.27191	5.87243	0.0223378	0.0143887	0.108193	0.0821732
chr17	80838995	80839095	6811856	0	+	0.6	(0.58,1]	chr17	687873	6	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	58	2	4.82753	5.271905	5.71628	0.0427798	0.00104668	0.13762	0.0146403
chr19	1035176	1035273	7185870	0	+	0.608247	(0.58,1]	chr19	730869	19	INTRON	INTRON	CNN2	ENSG00000064666.15	ENST00000263097.9:ENST00000348419.7:ENST00000565096.6:ENST00000562958.6:ENST00000569352.6:ENST00000568865.3:ENST00000606983.5:ENST00000607102.1:ENST00000562075.6:ENST00000566695.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	58	2	4.82753	5.271905	5.71628	0.0427798	0.00104668	0.13762	0.0146403
chr19	58326422	58326522	7412929	0	-	0.47	(0.45,0.485]	chr19	772006	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000283103	ENSG00000283103.4	ENST00000664481.1:ENST00000634676.2:ENST00000659246.1:ENST00000671228.1:ENST00000658331.1:ENST00000669883.1:ENST00000651375.3:ENST00000669440.2:ENST00000666049.1:ENST00000687313.1	lncRNA	lncRNA	lncRNA	lncRNA	0	59	2	5.2551	5.27178	5.28846	0.0373953	0.00612862	0.130656	0.0489549
chr3	71367267	71367367	1829121	0	-	0.43	(0.419,0.45]	chr3	188242	66	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000649145.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	61	2	4.9329	5.271605	5.61031	0.0716557	0.004032	0.168159	0.0371291
chr7	67139686	67139786	3385429	0	+	0.41	(0.39,0.419]	chr7	326601	217	INTRON	INTRON	TYW1	ENSG00000198874.14	ENST00000359626.10:ENST00000361660.8:ENST00000495971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	60	2	5.21344	5.271575	5.32971	0.0390381	0.00893514	0.131575	0.0620271
chrX	16595157	16595257	7984081	0	-	0.35	(0.33,0.36]	chrX	835302	39	INTRON	INTRON	CTPS2	ENSG00000047230.15	ENST00000359276.9:ENST00000443824.5:ENST00000380241.7	protein_coding	protein_coding	protein_coding	protein_coding	1	133	2	4.11609	5.27154	6.42699	0.00578704	0.00205621	0.0501412	0.0235218
chr18	22191003	22191102	7030453	0	+	0.383838	(0.36,0.39]	chr18	718114	76	INTRON	INTRON	GATA6	ENSG00000141448.11	ENST00000269216.10:ENST00000581694.1	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.885	5.271509999999999	5.65802	0.0697729	0.003279	0.167185	0.0322062
chr5	307160	307260	2377996	0	+	0.65	(0.58,1]	chr5	237476	4	SS5_PROX	SS5_PROX:INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1:ENST00000511482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	142	2	4.03107	5.271445	6.51182	0.00585987	9.48877e-5	0.0506158	0.00262417
chr5	151805395	151805490	2567447	0	+	0.4	(0.39,0.419]	chr5	255337	9	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000677923.1:ENST00000677323.1:ENST00000677687.1:ENST00000676715.1:ENST00000676734.1:ENST00000676878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	135	2	4.16761	5.271305	6.375	0.00769302	0.00194652	0.0584869	0.0225704
chr12	122238924	122239024	5529394	0	-	0.56	(0.523,0.58]	chr12	544926	2	SS3_PROX	SS3_PROX:INTRON	VPS33A	ENSG00000139719.11	ENST00000267199.9:ENST00000544349.6:ENST00000643696.1:ENST00000543633.5:ENST00000541169.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	128	2	4.34417	5.270955	6.19774	0.0072907	9.01636e-4	0.0567247	0.0132389
chr10	103700510	103700610	4757105	0	-	0.57	(0.523,0.58]	chr10	454791	70	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	5.02927	5.27087	5.51247	0.0230387	0.0095202	0.102982	0.0650078
chr9	134343127	134343227	4260854	0	+	0.57	(0.523,0.58]	chr9	406311	161	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	60	2	5.02927	5.27087	5.51247	0.0230387	0.0095202	0.102982	0.0650078
chrX	2879767	2879865	7831333	0	+	0.346939	(0.33,0.36]	chrX	822236	21	INTRON	INTRON	GYG2	ENSG00000056998.20	ENST00000381163.7:ENST00000381161.5:ENST00000398806.8:ENST00000353656.10:ENST00000639373.1:ENST00000381157.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	4.83538	5.270845	5.70631	0.0679743	0.00260751	0.164413	0.0278222
chr18	7612086	7612186	7005378	0	+	0.34	(0.33,0.36]	chr18	716101	438	INTRON	INTRON	PTPRM	ENSG00000173482.17	ENST00000332175.12:ENST00000580170.6	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.95163	5.27083	5.59003	0.0583482	0.00344516	0.155373	0.0333853
chr10	103692427	103692527	4757020	0	-	0.61	(0.58,1]	chr10	454779	144	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	5.02314	5.270635	5.51813	0.013519	0.00638322	0.0792526	0.0501889
chr9	96381477	96381577	4343960	0	-	0.59	(0.58,1]	chr9	415057	70	INTRON	INTRON	SLC35D2	ENSG00000130958.13	ENST00000253270.13:ENST00000375259.9:ENST00000482643.2:ENST00000375257.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	5.02314	5.270635	5.51813	0.013519	0.00638322	0.0792526	0.0501889
chr7	47363582	47363682	3587427	0	-	0.47	(0.45,0.485]	chr7	346030	169	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	131	2	4.11205	5.270630000000001	6.42921	0.00554658	0.00190576	0.0492398	0.0222917
chr1	8615879	8615978	393710	0	-	0.434343	(0.419,0.45]	chr1	45051	8	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	60	2	5.18804	5.270605	5.35317	0.051668	0.00714797	0.148503	0.0541241
chr19	33507551	33507650	7365929	0	-	0.444444	(0.419,0.45]	chr19	763467	62	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000651646.1:ENST00000590408.1:ENST00000593163.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	60	2	5.18804	5.270605	5.35317	0.051668	0.00714797	0.148503	0.0541241
chr22	20136909	20137008	7687000	0	+	0.606061	(0.58,1]	chr22	804236	45	INTRON	INTRON	ZDHHC8	ENSG00000099904.16	ENST00000436518.5:ENST00000334554.12:ENST00000405930.3:ENST00000320602.11:ENST00000468112.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.14497	5.270215	5.39546	0.0168207	0.00474658	0.0884836	0.0413976
chr6	34587882	34587982	3124184	0	-	0.59	(0.58,1]	chr6	304700	7	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	1	141	2	3.89863	5.27016	6.64169	0.00766639	6.2385e-5	0.0583292	0.00192539
chr6	685069	685168	3079018	0	-	0.424242	(0.419,0.45]	chr6	299433	52	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9:ENST00000443083.5:ENST00000475028.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	4.81671	5.27011	5.72351	0.08258	0.00310292	0.179396	0.0311614
chr3	105480442	105480542	1526600	0	+	0.36	(0.33,0.36]	chr3	162334	392	INTRON	INTRON	ALCAM	ENSG00000170017.12	ENST00000306107.9:ENST00000470756.5:ENST00000472644.6:ENST00000481337.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	60	2	5.11654	5.270105	5.42367	0.0299185	0.00998589	0.116945	0.0667545
chr16	14843680	14843778	6402162	0	+	0.428571	(0.419,0.45]	chr16	632386	19	INTRON	INTRON	NOMO1	ENSG00000103512.16	ENST00000287667.12	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.1405	5.26992	5.39934	0.0550015	0.00646489	0.153337	0.0503748
chr2	134145078	134145178	895681	0	+	0.43	(0.419,0.45]	chr2	101196	175	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	5.1405	5.26992	5.39934	0.0550015	0.00646489	0.153337	0.0503748
chr22	35849983	35850083	7804038	0	-	0.45	(0.419,0.45]	chr22	817785	95	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000359369.8:ENST00000695807.1:ENST00000408983.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	5.1405	5.26992	5.39934	0.0550015	0.00646489	0.153337	0.0503748
chr18	80177762	80177862	7183056	0	-	0.46	(0.45,0.485]	chr18	730359	168	INTRON	INTRON	PARD6G	ENSG00000178184.16	ENST00000353265.8	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.89685	5.269825	5.6428	0.0614781	0.00265386	0.158506	0.027979
chr20	36858674	36858774	7557088	0	-	0.43	(0.419,0.45]	chr20	789155	189	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	1	167	2	3.72389	5.26981	6.81573	0.0193862	1.90368e-4	0.0955413	0.0043642
chr18	76413370	76413470	7179253	0	-	0.45	(0.419,0.45]	chr18	730080	327	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.23407	5.269775	5.30548	0.0486006	0.00792071	0.145074	0.057762
chr9	136007233	136007332	4432144	0	-	0.373737	(0.36,0.39]	chr9	423617	8	UTR3	UTR3:EXON_MRNA	NACC2	ENSG00000148411.8	ENST00000277554.4:ENST00000371753.5	protein_coding	protein_coding	protein_coding	protein_coding	1	172	2	3.29013	5.269765	7.2494	0.0356209	4.74739e-5	0.127588	0.00158857
chr19	1166797	1166897	7305720	0	-	0.58	(0.523,0.58]	chr19	753054	118	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5:ENST00000587655.2	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.14602	5.269645000000001	5.39327	0.0277354	0.00734367	0.112851	0.0550721
chr1	23977058	23977157	426284	0	-	0.40404	(0.39,0.419]	chr1	50203	21	EXON_MRNA	EXON_MRNA:INTRON	SRSF10	ENSG00000188529.15	ENST00000492112.3:ENST00000344989.10:ENST00000341154.10:ENST00000453840.7:ENST00000484146.6:ENST00000473858.5:ENST00000374452.9:ENST00000374453.7:ENST00000343255.9:ENST00000485841.5:ENST00000338597.9:ENST00000495785.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	61	2	5.04836	5.26962	5.49088	0.0309972	0.0126072	0.119758	0.0768036
chr3	50013211	50013311	1467823	0	+	0.54	(0.523,0.58]	chr3	157166	133	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	156	2	3.62324	5.26951	6.91578	0.0180195	6.24234e-5	0.0921579	0.00192539
chr19	39158841	39158940	7259597	0	+	0.494949	(0.485,0.523]	chr19	744161	16	INTRON	INTRON	PAK4	ENSG00000130669.17	ENST00000602004.1:ENST00000599470.5:ENST00000360442.8:ENST00000321944.8:ENST00000593480.5:ENST00000358301.7:ENST00000593690.5:ENST00000599386.5:ENST00000599657.5	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.02573	5.269315000000001	5.5129	0.0229047	0.00985879	0.102982	0.0664239
chr6	115998385	115998485	3240813	0	-	0.49	(0.485,0.523]	chr6	314137	293	INTRON	INTRON	FRK	ENSG00000111816.8	ENST00000606080.2	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.02573	5.269315000000001	5.5129	0.0229047	0.00985879	0.102982	0.0664239
chr17	82315785	82315874	6988960	0	-	0.651685	(0.58,1]	chr17	714793	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CD7	ENSG00000173762.8	ENST00000584284.5:ENST00000312648.8:ENST00000583376.1	protein_coding	protein_coding	protein_coding	protein_coding	1	121	2	4.01623	5.269105	6.52198	0.00186556	0.00161478	0.0269723	0.0199131
chr12	132793267	132793365	5540394	0	-	0.714286	(0.58,1]	chr12	546816	16	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	303	2	5.26466	5.26905	5.27344	3.79742e-4	3.0948e-5	0.0111616	0.00115425
chr16	87124443	87124543	6652480	0	-	0.46	(0.45,0.485]	chr16	665579	402	INTRON	INTRON	C16orf95	ENSG00000260456.7	ENST00000562840.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	63	2	4.64346	5.268945	5.89443	0.0850039	0.00141013	0.181766	0.0180659
chr3	188409111	188409211	1654353	0	+	0.46	(0.45,0.485]	chr3	173774	24	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000618621.4:ENST00000640853.1:ENST00000494233.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	4.64346	5.268945	5.89443	0.0850039	0.00141013	0.181766	0.0180659
chr20	4152168	4152268	7422750	0	+	0.47	(0.45,0.485]	chr20	773300	28	INTRON	INTRON	SMOX	ENSG00000088826.18	ENST00000493223.1:ENST00000339123.10:ENST00000278795.7:ENST00000621355.4:ENST00000305958.9:ENST00000484515.1:ENST00000346595.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	5.06138	5.268929999999999	5.47648	0.0492008	0.0039628	0.146142	0.0368027
chr3	32430644	32430744	1437417	0	+	0.48	(0.45,0.485]	chr3	153224	382	INTRON	INTRON	CMTM7	ENSG00000153551.14	ENST00000349718.8:ENST00000334983.10:ENST00000454304.6:ENST00000465248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	59	2	5.06138	5.268929999999999	5.47648	0.0492008	0.0039628	0.146142	0.0368027
chr10	15229653	15229753	4637012	0	-	0.5	(0.485,0.523]	chr10	443055	82	INTRON	INTRON	FAM171A1	ENSG00000148468.17	ENST00000378116.9:ENST00000477161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	4.96239	5.26881	5.57523	0.0518747	0.00274261	0.148503	0.028553
chr17	17742250	17742350	6689458	0	+	0.49	(0.485,0.523]	chr17	671344	177	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	4.96239	5.26881	5.57523	0.0518747	0.00274261	0.148503	0.028553
chr19	40050477	40050577	7378952	0	-	0.51	(0.485,0.523]	chr19	765541	1	SS3_PROX	SS3_PROX:INTRON	ZNF780B	ENSG00000128000.17	ENST00000434248.6:ENST00000221355.10:ENST00000598845.5:ENST00000594811.1:ENST00000593605.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	59	2	4.96239	5.26881	5.57523	0.0518747	0.00274261	0.148503	0.028553
chr8	725861	725961	3932989	0	-	0.5	(0.485,0.523]	chr8	376060	95	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	4.96239	5.26881	5.57523	0.0518747	0.00274261	0.148503	0.028553
chr9	137723558	137723658	4265526	0	+	0.67	(0.58,1]	chr9	407352	59	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000460486.3:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	141	2	3.93773	5.2687100000000004	6.59969	0.00708574	7.15008e-5	0.0558168	0.00213784
chr10	18560865	18560965	4642337	0	-	0.4	(0.39,0.419]	chr10	443321	85	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	4.48504	5.268644999999999	6.05225	0.0364893	0.0130948	0.139793	0.0782739
chr6	131644028	131644128	3006956	0	+	0.48	(0.45,0.485]	chr6	294028	21	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000423831.5:ENST00000470930.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	59	2	5.23735	5.26854	5.29973	0.035042	0.00687715	0.12704	0.0526888
chr22	32819795	32819895	7717807	0	+	0.45	(0.419,0.45]	chr22	807776	173	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	4.7145	5.26793	5.82136	0.0256236	0.0210659	0.115966	0.0996078
chr3	98740983	98741083	1516296	0	+	0.43	(0.419,0.45]	chr3	161540	70	INTRON	INTRON	ST3GAL6	ENSG00000064225.13	ENST00000489112.5:ENST00000265261.11:ENST00000460774.5:ENST00000469105.5:ENST00000466482.5:ENST00000462152.5:ENST00000486249.5:ENST00000497008.5:ENST00000486334.6:ENST00000394162.5:ENST00000613264.5:ENST00000480133.1:ENST00000465004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	167	2	3.65337	5.267815	6.88226	0.0216831	1.58518e-4	0.100615	0.00384084
chr12	26528951	26529051	5398513	0	-	0.45	(0.419,0.45]	chr12	528527	333	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	2	184	2	3.6674	5.2677700000000005	6.86814	0.00384173	0.00238608	0.0399957	0.0260605
chr2	17739960	17740054	1094770	0	-	0.37234	(0.36,0.39]	chr2	119295	13	INTRON	INTRON	SMC6	ENSG00000163029.16	ENST00000351948.8:ENST00000448223.7:ENST00000402989.5:ENST00000446852.5:ENST00000381272.5	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.99672	5.267635	5.53855	0.0604395	0.00432809	0.158506	0.0389438
chr7	139704643	139704743	3723192	0	-	0.52	(0.485,0.523]	chr7	357498	726	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	1	129	2	4.43422	5.26713	6.10004	0.00860355	7.18351e-4	0.0623467	0.0112783
chr10	18552970	18553070	4642258	0	-	0.39	(0.36,0.39]	chr10	443321	6	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.16105	5.267060000000001	5.37307	0.0361409	0.00993384	0.127853	0.0666221
chr6	111470124	111470223	3236218	0	-	0.383838	(0.36,0.39]	chr6	313690	94	INTRON	INTRON	REV3L	ENSG00000009413.16	ENST00000422377.5:ENST00000434009.5:ENST00000368802.8:ENST00000435970.5:ENST00000358835.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	5.16105	5.267060000000001	5.37307	0.0361409	0.00993384	0.127853	0.0666221
chr2	175663755	175663855	959984	0	+	0.37	(0.36,0.39]	chr2	105443	688	INTRON	INTRON	ENSG00000289349	ENSG00000289349.1	ENST00000692740.1:ENST00000685522.1	lncRNA	lncRNA	lncRNA	lncRNA	2	181	2	3.70091	5.266925	6.83294	0.00338675	0.00205242	0.0372054	0.0234951
chr7	132840868	132840968	3713435	0	-	0.39	(0.36,0.39]	chr7	356850	20	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	63	2	4.86249	5.266885	5.67128	0.023302	0.0181775	0.103669	0.0955836
chr13	95688833	95688933	5629718	0	+	0.4	(0.39,0.419]	chr13	553106	111	INTRON	INTRON	DNAJC3	ENSG00000102580.15	ENST00000602402.6:ENST00000376795.6	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.99538	5.26668	5.53798	0.0613573	0.0043589	0.158506	0.0391245
chr13	97367951	97368051	5632271	0	+	0.4	(0.39,0.419]	chr13	553226	10	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000449284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	4.99538	5.26668	5.53798	0.0613573	0.0043589	0.158506	0.0391245
chr16	89428956	89429056	6661123	0	-	0.46	(0.45,0.485]	chr16	666747	102	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	131	2	4.39187	5.2665299999999995	6.14119	0.00917101	8.95692e-4	0.064285	0.0131712
chr10	45856493	45856593	4678134	0	-	0.54	(0.523,0.58]	chr10	446183	12	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000610690.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	3	458	2	4.52488	5.266315	6.00775	0.00143903	5.30043e-6	0.0232783	3.28939e-4
chr20	3609645	3609745	7420968	0	+	0.37	(0.36,0.39]	chr20	773042	50	INTRON	INTRON	ATRN	ENSG00000088812.18	ENST00000262919.10:ENST00000446916.2	protein_coding	protein_coding	protein_coding	protein_coding	1	141	2	3.74547	5.26626	6.78705	0.00550271	0.00367488	0.0454065	0.0389784
chr10	68638801	68638901	4498280	0	+	0.4	(0.39,0.419]	chr10	430047	374	INTRON	INTRON	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.16048	5.2661	5.37172	0.0367885	0.00999413	0.129052	0.0667545
chr15	36645487	36645587	6075052	0	+	0.4	(0.39,0.419]	chr15	596839	2	SS5_PROX	SS5_PROX:INTRON	CDIN1	ENSG00000186073.14	ENST00000566621.6:ENST00000570265.6:ENST00000567573.5:ENST00000564586.5:ENST00000569302.6:ENST00000642817.1:ENST00000643837.1:ENST00000646533.1:ENST00000643822.1:ENST00000646657.1:ENST00000437989.6:ENST00000566807.5:ENST00000643612.1:ENST00000567389.5:ENST00000562877.5:ENST00000338183.8:ENST00000647059.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	60	2	5.16048	5.2661	5.37172	0.0367885	0.00999413	0.129052	0.0667545
chr6	143782918	143783018	3019152	0	+	0.34	(0.33,0.36]	chr6	295050	3	SS3_PROX	SS3_PROX:INTRON	PHACTR2	ENSG00000112419.15	ENST00000367584.8:ENST00000427704.6:ENST00000305766.10:ENST00000440869.7:ENST00000367582.7:ENST00000536245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	59	2	5.15931	5.265965	5.37262	0.043896	0.00569729	0.139792	0.046716
chr16	308684	308782	6529594	0	-	0.622449	(0.58,1]	chr16	648369	39	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	126	2	3.79235	5.26584	6.73933	0.00302484	0.00116939	0.0305643	0.0206836
chr9	129618423	129618522	4251015	0	+	0.464646	(0.45,0.485]	chr9	404743	89	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	1	160	2	4.00556	5.26555	6.52554	0.00992252	2.5568e-4	0.0671959	0.00541562
chr7	566261	566361	3523747	0	-	0.41	(0.39,0.419]	chr7	340370	144	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000400758.6	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.76257	5.265175	5.76778	0.0822354	0.0025422	0.179396	0.0271978
chr7	101442785	101442885	3432791	0	+	0.53	(0.523,0.58]	chr7	332431	223	INTRON	INTRON	COL26A1	ENSG00000160963.14	ENST00000313669.12:ENST00000613501.1	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.65157	5.264735	5.8779	0.0787008	0.00121652	0.175203	0.0162693
chr2	24310992	24311092	1104252	0	-	0.35	(0.33,0.36]	chr2	120585	3	SS3_PROX	SS3_PROX:INTRON	ITSN2	ENSG00000198399.16	ENST00000355123.9:ENST00000361999.7:ENST00000406921.7:ENST00000412011.5:ENST00000443927.5	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.11012	5.26446	5.4188	0.04702	0.00513015	0.143232	0.0435186
chr2	26092762	26092862	731407	0	+	0.35	(0.33,0.36]	chr2	85215	501	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	59	2	5.11012	5.26446	5.4188	0.04702	0.00513015	0.143232	0.0435186
chr6	143783018	143783118	3019153	0	+	0.36	(0.33,0.36]	chr6	295050	4	SS3_PROX	SS3_PROX:INTRON	PHACTR2	ENSG00000112419.15	ENST00000367584.8:ENST00000427704.6:ENST00000305766.10:ENST00000440869.7:ENST00000367582.7:ENST00000536245.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	59	2	5.11012	5.26446	5.4188	0.04702	0.00513015	0.143232	0.0435186
chr13	50811087	50811186	5600751	0	+	0.484848	(0.45,0.485]	chr13	551754	20	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000652753.1:ENST00000650996.1:ENST00000413510.4	lncRNA	lncRNA	lncRNA	lncRNA	0	59	2	5.00859	5.26424	5.51989	0.052901	0.00357389	0.14912	0.0342681
chr4	37841729	37841826	2027790	0	+	0.453608	(0.45,0.485]	chr4	207056	11	INTRON	INTRON	PGM2	ENSG00000169299.14	ENST00000381967.9:ENST00000515668.5:ENST00000505986.5:ENST00000512556.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	59	2	5.00859	5.26424	5.51989	0.052901	0.00357389	0.14912	0.0342681
chr13	113350248	113350348	5753435	0	-	0.63	(0.58,1]	chr13	564102	49	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	1	120	2	4.04556	5.263955	6.48235	0.00202884	0.00148416	0.0283135	0.0186585
chr10	75726648	75726748	4523430	0	+	0.45	(0.419,0.45]	chr10	432271	787	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	5.04043	5.263945	5.48746	0.0625897	0.00532156	0.160305	0.0446153
chr11	70557030	70557130	5059843	0	-	0.45	(0.419,0.45]	chr11	492663	537	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	60	2	5.04043	5.263945	5.48746	0.0625897	0.00532156	0.160305	0.0446153
chr10	75595984	75596083	4522119	0	+	0.323232	(0.29,0.33]	chr10	432257	29	INTRON	INTRON	LRMDA:ENSG00000286715	ENSG00000148655.15:ENSG00000286715.1	ENST00000611255.5:ENST00000670381.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	62	2	4.65868	5.263805	5.86893	0.0735584	0.00137721	0.17026	0.0178071
chr2	62997166	62997266	816898	0	+	0.32	(0.29,0.33]	chr2	92204	4	SS5_PROX	SS5_PROX:INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000496857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	268	2	3.49643	5.263725	7.03102	0.00131846	7.99286e-4	0.0221729	0.0121492
chr5	75569151	75569239	2456787	0	+	0.454545	(0.45,0.485]	chr5	245396	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POLK	ENSG00000122008.15	ENST00000241436.8:ENST00000503479.6:ENST00000506928.5:ENST00000510815.6:ENST00000505774.5:ENST00000514296.5:ENST00000514141.5:ENST00000515295.5:ENST00000508867.5:ENST00000504026.5:ENST00000505975.5:ENST00000508526.5:ENST00000509126.2:ENST00000511527.5:ENST00000507073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	59	2	5.18438	5.263695	5.34301	0.0328801	0.00773818	0.122593	0.0568726
chr3	187066507	187066606	1651658	0	+	0.393939	(0.39,0.419]	chr3	173706	15	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000676633.1:ENST00000448044.5:ENST00000416235.6:ENST00000448449.1:ENST00000442023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	197	2	3.16087	5.2635749999999994	7.36628	0.0079089	0.00132044	0.057762	0.0222019
chr15	25435263	25435362	6205974	0	-	0.424242	(0.419,0.45]	chr15	610832	78	INTRON	INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000625681.2:ENST00000627018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	60	2	5.20508	5.263515	5.32195	0.0431627	0.00979452	0.138403	0.0664239
chr6	169516838	169516938	3303021	0	-	0.43	(0.419,0.45]	chr6	319798	580	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	136	2	4.22247	5.263135	6.3038	0.00990101	0.0018006	0.0671959	0.0214959
chr13	97346203	97346303	5632047	0	+	0.35	(0.33,0.36]	chr13	553194	26	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	353	2	4.90784	5.2631049999999995	5.61837	0.00190613	2.85338e-5	0.0273283	0.00108469
chr16	1740594	1740694	6371345	0	+	0.63	(0.58,1]	chr16	628853	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	56	2	5.16453	5.2630300000000005	5.36153	0.0249802	0.00273899	0.10758	0.028553
chr2	233166222	233166321	1058288	0	+	0.626263	(0.58,1]	chr2	115120	14	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493078.1:ENST00000472517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	56	2	5.16453	5.2630300000000005	5.36153	0.0249802	0.00273899	0.10758	0.028553
chr21	43727347	43727445	7623867	0	+	0.642857	(0.58,1]	chr21	796696	36	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000438837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	5.16453	5.2630300000000005	5.36153	0.0249802	0.00273899	0.10758	0.028553
chr1	43554241	43554341	106981	0	+	0.57	(0.523,0.58]	chr1	13191	3	SS5_PROX	SS5_PROX:INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	4.83424	5.262905	5.69157	0.0172851	0.0144272	0.0897247	0.0833845
chr11	75320939	75321039	5079317	0	-	0.54	(0.523,0.58]	chr11	494237	89	INTRON	INTRON	ARRB1	ENSG00000137486.17	ENST00000420843.7:ENST00000360025.7:ENST00000533255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	62	2	4.83424	5.262905	5.69157	0.0172851	0.0144272	0.0897247	0.0833845
chr16	47403810	47403910	6585232	0	-	0.57	(0.523,0.58]	chr16	658341	77	INTRON	INTRON	ITFG1	ENSG00000129636.13	ENST00000320640.11:ENST00000544001.6:ENST00000569551.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	62	2	4.83424	5.262905	5.69157	0.0172851	0.0144272	0.0897247	0.0833845
chr10	80503332	80503431	4535613	0	+	0.434343	(0.419,0.45]	chr10	432713	137	INTRON	INTRON	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000481124.5:ENST00000372158.6:ENST00000372157.6:ENST00000469149.1:ENST00000372164.7:ENST00000341863.10:ENST00000372156.5:ENST00000616406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	4.87598	5.262510000000001	5.64904	0.0768574	0.00368884	0.174882	0.0348088
chr4	52062432	52062532	2042346	0	+	0.44	(0.419,0.45]	chr4	208710	1	SS5_PROX	SS5_PROX:INTRON	SPATA18	ENSG00000163071.11	ENST00000295213.9:ENST00000514670.1:ENST00000506829.5:ENST00000419395.6:ENST00000508915.5:ENST00000511028.1:ENST00000505320.5:ENST00000505038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	61	2	4.87598	5.262510000000001	5.64904	0.0768574	0.00368884	0.174882	0.0348088
chr1	165900798	165900898	263217	0	+	0.45	(0.419,0.45]	chr1	31081	24	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1:ENST00000462329.5:ENST00000464197.5:ENST00000469256.6:ENST00000470820.1:ENST00000463772.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	140	2	4.53313	5.262465	5.9918	0.0162379	8.02103e-4	0.0873195	0.0121806
chr13	113013463	113013563	5655758	0	+	0.53	(0.523,0.58]	chr13	555138	111	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	61	2	4.90222	5.2623999999999995	5.62258	0.0193313	0.0125132	0.0954446	0.0765738
chr9	129613851	129613951	4250969	0	+	0.58	(0.523,0.58]	chr9	404743	43	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.90222	5.2623999999999995	5.62258	0.0193313	0.0125132	0.0954446	0.0765738
chr10	48040338	48040437	4680769	0	-	0.545455	(0.523,0.58]	chr10	446508	9	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	0	59	2	4.905	5.26238	5.61976	0.0563605	0.00236826	0.154188	0.0259199
chr20	37395761	37395861	7473060	0	+	0.57	(0.523,0.58]	chr20	778189	2	SS3_PROX	SS3_PROX:INTRON	SRC	ENSG00000197122.13	ENST00000692112.1:ENST00000692423.1:ENST00000373578.7:ENST00000373567.6:ENST00000373558.2:ENST00000358208.9:ENST00000489153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	59	2	4.905	5.26238	5.61976	0.0563605	0.00236826	0.154188	0.0259199
chr9	137722760	137722860	4265518	0	+	0.65	(0.58,1]	chr9	407352	51	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000460486.3:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	59	2	4.6951	5.262370000000001	5.82964	0.0521567	7.58111e-4	0.148503	0.0117078
chr18	49974715	49974815	7164373	0	-	0.59	(0.58,1]	chr18	728321	1	SS3_PROX	SS3_PROX:INTRON	MYO5B	ENSG00000167306.20	ENST00000285039.12	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.11355	5.262245	5.41094	0.0271806	0.00240622	0.112113	0.0261006
chr7	584007	584107	3523926	0	-	0.59	(0.58,1]	chr7	340377	1	SS5_PROX	SS5_PROX:INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000400758.6:ENST00000430040.5	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.11355	5.262245	5.41094	0.0271806	0.00240622	0.112113	0.0261006
chr8	127949535	127949635	3919355	0	+	0.57	(0.523,0.58]	chr8	374241	62	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1	lncRNA	lncRNA	lncRNA	lncRNA	0	63	2	4.58058	5.262235	5.94389	0.0860403	0.0010207	0.181766	0.0143498
chr17	57467403	57467503	6761886	0	+	0.45	(0.419,0.45]	chr17	682137	223	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	383	2	4.59016	5.26218	5.9342	0.00449986	1.48612e-5	0.0436138	6.80263e-4
chr17	57477381	57477481	6761986	0	+	0.47	(0.45,0.485]	chr17	682137	323	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	130	2	4.3114	5.262175	6.21295	0.00810629	0.00111665	0.0602166	0.0152867
chr1	179991661	179991761	294610	0	+	0.31	(0.29,0.33]	chr1	33491	2	SS3_PROX	SS3_PROX:INTRON	CEP350	ENSG00000135837.16	ENST00000491495.2:ENST00000367607.8:ENST00000357434.2	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.82544	5.2621400000000005	5.69884	0.0156279	0.0155382	0.0877396	0.0849828
chr19	16875836	16875930	7218144	0	+	0.56383	(0.523,0.58]	chr19	737688	4	SS3_PROX	SS3_PROX:INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000595541.1	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.16969	5.262105	5.35452	0.0387762	0.00453096	0.131324	0.0400651
chr2	98488771	98488871	855799	0	+	0.55	(0.523,0.58]	chr2	96866	433	INTRON	INTRON	INPP4A	ENSG00000040933.16	ENST00000409016.8:ENST00000409851.8:ENST00000074304.9:ENST00000409463.5:ENST00000409540.7	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.16969	5.262105	5.35452	0.0387762	0.00453096	0.131324	0.0400651
chr9	95063767	95063865	4190643	0	+	0.632653	(0.58,1]	chr9	398166	26	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000297979.9:ENST00000424143.5:ENST00000462125.5:ENST00000479161.5:ENST00000471978.5:ENST00000445181.5:ENST00000478473.1:ENST00000463372.5:ENST00000489562.5:ENST00000468164.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	56	2	5.21377	5.262065	5.31036	0.0230012	0.00312721	0.102982	0.0311915
chr6	128517128	128517228	3257142	0	-	0.44	(0.419,0.45]	chr6	315230	249	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000524534.5:ENST00000525459.1:ENST00000392449.4:ENST00000532751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	171	2	4.07361	5.261565	6.44952	0.0109421	5.09118e-4	0.0708586	0.00884498
chr22	45323000	45323074	7739062	0	+	0.567568	(0.523,0.58]	chr22	811415	2	SS3_PROX	SS3_PROX:INTRON	FAM118A	ENSG00000100376.12	ENST00000216214.7:ENST00000441876.7:ENST00000405673.5:ENST00000477714.1:ENST00000427777.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	59	2	5.08882	5.261465	5.43411	0.026041	0.00834774	0.109673	0.0598672
chr22	50233526	50233626	7827196	0	-	0.58	(0.523,0.58]	chr22	821198	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	59	2	5.08882	5.261465	5.43411	0.026041	0.00834774	0.109673	0.0598672
chr11	70657530	70657630	5060850	0	-	0.64	(0.58,1]	chr11	492672	27	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	57	2	5.08534	5.261430000000001	5.43752	0.0156166	0.00549379	0.0849828	0.0454065
chr8	9771775	9771868	3754894	0	+	0.623656	(0.58,1]	chr8	360881	12	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	5.08534	5.261430000000001	5.43752	0.0156166	0.00549379	0.0849828	0.0454065
chr6	148489811	148489911	3034075	0	+	0.38	(0.36,0.39]	chr6	295943	17	INTRON	INTRON	SASH1	ENSG00000111961.19	ENST00000367467.8:ENST00000637469.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	136	2	3.9354	5.26139	6.58738	0.00521906	0.00347533	0.0475638	0.0336331
chrX	2382660	2382760	7967670	0	-	0.45	(0.419,0.45]	chrX	834355	443	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	166	2	3.72389	5.261245000000001	6.7986	0.0193862	1.99513e-4	0.0955413	0.00452558
chr1	147243888	147243987	232453	0	+	0.424242	(0.419,0.45]	chr1	25788	3	INTRON	INTRON	CHD1L	ENSG00000131778.20	ENST00000652587.1:ENST00000652616.1:ENST00000652494.1:ENST00000651207.1:ENST00000650721.1:ENST00000651226.1:ENST00000652161.1:ENST00000651510.1:ENST00000361293.10:ENST00000652278.1:ENST00000369259.4:ENST00000467213.5:ENST00000369258.8:ENST00000622533.4:ENST00000651410.1:ENST00000652486.1:ENST00000652346.1:ENST00000651407.1:ENST00000650828.1:ENST00000651070.1:ENST00000650714.1:ENST00000651420.1:ENST00000652357.1:ENST00000488864.5:ENST00000652188.1:ENST00000651820.1:ENST00000651231.1:ENST00000492728.1:ENST00000651206.1:ENST00000431239.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	136	2	4.09462	5.261215	6.42781	0.0080847	0.00248506	0.0602118	0.0267262
chr3	65916767	65916867	1814646	0	-	0.42	(0.419,0.45]	chr3	187310	92	INTRON	INTRON	MAGI1:MAGI1-IT1	ENSG00000151276.24:ENSG00000272610.1	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5:ENST00000460754.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	4	700	2	5.1302	5.261215	5.39223	7.4375e-4	1.86223e-5	0.0161049	8.01857e-4
chr16	14317470	14317570	6401540	0	+	0.53	(0.523,0.58]	chr16	632294	77	INTRON	INTRON	MIR193BHG	ENSG00000262454.4	ENST00000634265.2:ENST00000570945.2:ENST00000668516.1:ENST00000641433.1:ENST00000641175.1	lncRNA	lncRNA	lncRNA	lncRNA	1	221	2	5.07363	5.2610399999999995	5.44845	0.00361636	0.00117005	0.0342681	0.0206836
chr18	69486927	69487027	7084042	0	+	0.34	(0.33,0.36]	chr18	722115	153	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.22448	5.26101	5.29754	0.0360263	0.00791583	0.127853	0.057762
chr15	40107758	40107852	6235236	0	-	0.521277	(0.485,0.523]	chr15	613048	1	SS5_PROX	SS5_PROX:INTRON	BMF	ENSG00000104081.14	ENST00000354670.9:ENST00000558774.5:ENST00000559701.5:ENST00000557870.1:ENST00000560430.1	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.8987	5.26085	5.623	0.0192139	0.0129327	0.095424900000000007	0.0778105
chr17	72916151	72916251	6967450	0	-	0.5	(0.485,0.523]	chr17	710518	660	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	59	2	4.90542	5.2608049999999995	5.61619	0.0561086	0.00247695	0.154188	0.0266492
chr2	232072909	232073009	1052184	0	+	0.38	(0.36,0.39]	chr2	114547	425	INTRON	INTRON	DIS3L2	ENSG00000144535.20	ENST00000273009.10:ENST00000390005.9:ENST00000409401.7:ENST00000445090.5:ENST00000441279.5:ENST00000325385.12:ENST00000433430.5:ENST00000464554.5:ENST00000470087.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	61	2	4.82572	5.26073	5.69574	0.0751666	0.00299965	0.172839	0.030427
chr5	1327320	1327419	2609088	0	-	0.555556	(0.523,0.58]	chr5	259719	10	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	205	2	3.68312	5.26072	6.83832	0.00223061	8.61679e-4	0.0297064	0.0127848
chr22	42956386	42956486	7823695	0	-	0.39	(0.36,0.39]	chr22	820622	95	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000407585.5:ENST00000402229.5:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5:ENST00000453079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	4.94194	5.2607099999999996	5.57948	0.064883	0.00393844	0.162218	0.0367306
chr6	15264658	15264758	2856693	0	+	0.38	(0.36,0.39]	chr6	279178	153	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.94194	5.2607099999999996	5.57948	0.064883	0.00393844	0.162218	0.0367306
chr20	34566549	34566649	7547093	0	-	0.48	(0.45,0.485]	chr20	787854	52	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	2	174	2	3.81852	5.260665	6.70281	0.00338129	0.0012641	0.0371948	0.0167694
chr1	2155396	2155494	4178	0	+	0.510204	(0.485,0.523]	chr1	983	41	INTRON	INTRON	PRKCZ	ENSG00000067606.17	ENST00000378567.8:ENST00000400921.6:ENST00000461106.6:ENST00000486681.5:ENST00000479263.5:ENST00000503672.1:ENST00000478770.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	58	2	5.17012	5.26054	5.35096	0.038581	0.0047171	0.131324	0.0413976
chr10	70071818	70071918	4503515	0	+	0.5	(0.485,0.523]	chr10	430825	46	INTRON	INTRON	MACROH2A2	ENSG00000099284.15	ENST00000677255.1:ENST00000676683.1:ENST00000676699.1:ENST00000677659.1:ENST00000676609.1:ENST00000676923.1:ENST00000373255.9:ENST00000679349.1:ENST00000455786.1:ENST00000676608.1:ENST00000676692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	58	2	5.17012	5.26054	5.35096	0.038581	0.0047171	0.131324	0.0413976
chr14	91157138	91157238	5898904	0	+	0.49	(0.485,0.523]	chr14	576320	1	SS3_PROX	SS3_PROX:INTRON	DGLUCY	ENSG00000133943.21	ENST00000521334.5:ENST00000522837.5:ENST00000518871.5:ENST00000520328.5:ENST00000521081.5:ENST00000524232.5:ENST00000522170.5:ENST00000256324.15:ENST00000519950.5:ENST00000523879.5:ENST00000521077.6:ENST00000518665.6:ENST00000519994.5:ENST00000523837.5:ENST00000518868.5:ENST00000518649.5:ENST00000519019.5:ENST00000523816.5:ENST00000517518.5:ENST00000428926.6:ENST00000517362.5:ENST00000523894.5:ENST00000522322.5:ENST00000523771.5:ENST00000521064.5:ENST00000525393.6:ENST00000412671.6:ENST00000298858.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	58	2	5.17012	5.26054	5.35096	0.038581	0.0047171	0.131324	0.0413976
chr7	133884573	133884673	3491491	0	+	0.49	(0.485,0.523]	chr7	336715	667	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	5.17012	5.26054	5.35096	0.038581	0.0047171	0.131324	0.0413976
chr3	182976194	182976294	1964439	0	-	0.3	(0.29,0.33]	chr3	199617	101	INTRON	INTRON	DCUN1D1	ENSG00000043093.15	ENST00000292782.9:ENST00000632685.1:ENST00000460412.6:ENST00000469954.5:ENST00000492563.1:ENST00000497606.5:ENST00000487822.5:ENST00000466812.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	58	2	5.22448	5.26037	5.29626	0.0331252	0.005619	0.123313	0.0462026
chr16	28481412	28481508	6574449	0	-	0.416667	(0.39,0.419]	chr16	656474	13	INTRON	INTRON	CLN3	ENSG00000188603.22	ENST00000637100.1:ENST00000569430.7:ENST00000359984.12:ENST00000360019.8:ENST00000636147.2:ENST00000564091.6:ENST00000563874.5:ENST00000357857.14:ENST00000333496.14:ENST00000561689.6:ENST00000395653.9:ENST00000357806.11:ENST00000568076.6:ENST00000636907.1:ENST00000637184.1:ENST00000636839.1:ENST00000637107.1:ENST00000636351.1:ENST00000636977.1:ENST00000637578.1:ENST00000565354.5:ENST00000635958.1:ENST00000567963.6:ENST00000568452.6:ENST00000637871.1:ENST00000565316.6:ENST00000628023.3:ENST00000636228.1:ENST00000635861.1:ENST00000636172.1:ENST00000355477.10:ENST00000565140.5:ENST00000566057.5:ENST00000569030.5:ENST00000637699.1:ENST00000568422.6:ENST00000637050.1:ENST00000636853.1:ENST00000566824.6:ENST00000636685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	135	2	4.00778	5.26029	6.5128	0.00608676	0.00291522	0.0515813	0.0298627
chr2	241570971	241571062	1077844	0	+	0.681319	(0.58,1]	chr2	117121	3	INTRON	INTRON	BOK	ENSG00000176720.6	ENST00000318407.5	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.81862	5.260265	5.70191	0.0102696	0.00964351	0.0678072	0.0659937
chr6	157453729	157453829	3054567	0	+	0.38	(0.36,0.39]	chr6	297167	711	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.10608	5.25999	5.4139	0.0340874	0.0111429	0.125059	0.071709
chr10	29481240	29481339	4471120	0	+	0.50505	(0.485,0.523]	chr10	427764	123	INTRON	INTRON	SVIL-AS1	ENSG00000224597.11	ENST00000684815.1:ENST00000413405.6:ENST00000646086.2:ENST00000423223.6:ENST00000414457.6:ENST00000687838.1:ENST00000446807.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	59	2	5.08528	5.259905	5.43453	0.0258944	0.0086528	0.109555	0.0612699
chr16	81631482	81631582	6509612	0	+	0.52	(0.485,0.523]	chr16	645926	94	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.08528	5.259905	5.43453	0.0258944	0.0086528	0.109555	0.0612699
chr20	63733352	63733452	7509373	0	+	0.67	(0.58,1]	chr20	783519	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1:ENST00000632538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	120	2	4.59428	5.25978	5.92528	0.0062948	2.81862e-4	0.0523832	0.00579621
chr10	132712053	132712153	4618588	0	+	0.6	(0.58,1]	chr10	441181	12	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000487614.1:ENST00000498337.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	5.0607	5.25971	5.45872	0.029633	0.00211999	0.116079	0.0239744
chr16	1728043	1728142	6371216	0	+	0.626263	(0.58,1]	chr16	628837	30	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000685565.1:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	56	2	5.0607	5.25971	5.45872	0.029633	0.00211999	0.116079	0.0239744
chr12	101900990	101901090	5308260	0	+	0.38	(0.36,0.39]	chr12	517148	3	SS3_PROX	SS3_PROX:INTRON	DRAM1	ENSG00000136048.14	ENST00000258534.13:ENST00000544152.5:ENST00000551403.1:ENST00000549365.1:ENST00000614926.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	61	2	4.98942	5.259645	5.52987	0.0287883	0.0141427	0.115991	0.0833845
chr1	16971167	16971267	52969	0	+	0.49	(0.485,0.523]	chr1	5336	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CROCC	ENSG00000058453.17	ENST00000375541.10	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.21769	5.25964	5.30159	0.0359739	0.00529578	0.127853	0.044517
chr11	63872265	63872365	4867136	0	+	0.5	(0.485,0.523]	chr11	466776	25	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5:ENST00000543674.1:ENST00000540169.5	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.21769	5.25964	5.30159	0.0359739	0.00529578	0.127853	0.044517
chr5	14382948	14383048	2385773	0	+	0.5	(0.485,0.523]	chr5	238593	13	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000512070.6:ENST00000509967.6:ENST00000513206.5:ENST00000515144.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	58	2	5.21769	5.25964	5.30159	0.0359739	0.00529578	0.127853	0.044517
chrY	14625490	14625590	8141691	0	+	0.49	(0.485,0.523]	chrY	848292	25	INTRON	INTRON	NLGN4Y	ENSG00000165246.15	ENST00000643089.1:ENST00000382872.5:ENST00000355905.6:ENST00000382868.5:ENST00000476359.1:ENST00000684976.1:ENST00000339174.9:ENST00000413217.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	5.21769	5.25964	5.30159	0.0359739	0.00529578	0.127853	0.044517
chr3	68984165	68984265	1820181	0	-	0.47	(0.45,0.485]	chr3	187556	9	INTRON	INTRON	EOGT	ENSG00000163378.14	ENST00000295571.9:ENST00000383701.8:ENST00000496647.5:ENST00000403140.6:ENST00000540764.5:ENST00000540955.5:ENST00000480846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	60	2	4.83755	5.25955	5.68155	0.06646	0.00241241	0.162385	0.0261086
chr19	38648560	38648660	7257849	0	+	0.59	(0.58,1]	chr19	743979	3	SS5_PROX	SS5_PROX:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	56	2	5.25731	5.259345	5.26138	0.021217	0.00358178	0.0996078	0.0342681
chr14	63486448	63486548	5992403	0	-	0.26	[0,0.29]	chr14	587804	322	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	57	2	5.05409	5.25929	5.46449	0.0318802	0.00299691	0.12158	0.030427
chr17	56892229	56892329	6931120	0	-	0.39	(0.36,0.39]	chr17	706269	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000574234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	148	2	4.84697	5.259125	5.67128	0.023302	3.12014e-4	0.103669	0.00625316
chr13	102648406	102648506	5647967	0	+	0.41	(0.39,0.419]	chr13	554281	1	SS3_PROX	SS3_PROX:INTRON	TPP2	ENSG00000134900.12	ENST00000376052.5:ENST00000651448.1:ENST00000376065.8:ENST00000652308.1:ENST00000651544.1:ENST00000651748.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	5.10551	5.259024999999999	5.41254	0.0347088	0.0112089	0.12648	0.071709
chr10	77856429	77856529	4718926	0	-	0.54	(0.523,0.58]	chr10	450262	3	SS5_PROX	SS5_PROX:INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7:ENST00000475613.6:ENST00000468332.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	58	2	5.06957	5.25901	5.44845	0.0448011	0.00361636	0.140478	0.0342681
chr16	16039583	16039682	6406905	0	+	0.535354	(0.523,0.58]	chr16	633041	26	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	58	2	5.06957	5.25901	5.44845	0.0448011	0.00361636	0.140478	0.0342681
chr10	103697815	103697915	4757078	0	-	0.53	(0.523,0.58]	chr10	454791	43	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	5.25403	5.258675	5.26332	0.0337698	0.00573579	0.124319	0.0467736
chr2	236077848	236077948	1068400	0	+	0.54	(0.523,0.58]	chr2	115777	54	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000418654.1:ENST00000466575.5:ENST00000453371.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	58	2	5.25403	5.258675	5.26332	0.0337698	0.00573579	0.124319	0.0467736
chr3	52972853	52972953	1782646	0	-	0.56	(0.523,0.58]	chr3	185809	32	INTRON	INTRON	SFMBT1	ENSG00000163935.14	ENST00000394752.8:ENST00000482396.5:ENST00000483069.5:ENST00000497586.5:ENST00000470575.5:ENST00000474837.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	5.25403	5.258675	5.26332	0.0337698	0.00573579	0.124319	0.0467736
chr1	1032214	1032314	1037	0	+	0.57	(0.523,0.58]	chr1	166	94	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.96714	5.25863	5.55012	0.0217068	0.0108948	0.100615	0.0706366
chr1	243481043	243481143	370445	0	+	0.55	(0.523,0.58]	chr1	41881	48	INTRON	INTRON	SDCCAG8	ENSG00000054282.16	ENST00000366541.8:ENST00000435549.1	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.96714	5.25863	5.55012	0.0217068	0.0108948	0.100615	0.0706366
chr3	12965003	12965102	1688779	0	-	0.565657	(0.523,0.58]	chr3	176520	40	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	4.96714	5.25863	5.55012	0.0217068	0.0108948	0.100615	0.0706366
chr7	130119950	130120049	3480069	0	+	0.424242	(0.419,0.45]	chr7	336300	24	INTRON	INTRON	KLHDC10	ENSG00000128607.14	ENST00000335420.10:ENST00000463413.1:ENST00000468226.1	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.98767	5.25863	5.52959	0.0669167	0.00484244	0.16272	0.0418176
chr1	246233323	246233423	703118	0	-	0.47	(0.45,0.485]	chr1	82422	397	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	167	2	3.25658	5.25854	7.2605	0.0347918	2.93313e-5	0.126561	0.00110673
chr1	92606785	92606883	529719	0	-	0.357143	(0.33,0.36]	chr1	62138	10	INTRON	INTRON	EVI5	ENSG00000067208.16	ENST00000370331.5:ENST00000540033.2:ENST00000684568.2:ENST00000491940.5	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.77355	5.258315	5.74308	0.0735809	0.00238447	0.17026	0.0260514
chr1	120838512	120838602	225981	0	+	0.444444	(0.419,0.45]	chr1	25036	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF26	ENSG00000273136.8	ENST00000620612.5:ENST00000652444.1:ENST00000619748.4:ENST00000611287.4:ENST00000611702.4:ENST00000617913.4:ENST00000609741.2	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	5.15214	5.258045	5.36395	0.0407485	0.0109324	0.135868	0.0706366
chr15	74893914	74894009	6152683	0	+	0.463158	(0.45,0.485]	chr15	605239	2	INTRON	INTRON	MPI	ENSG00000178802.18	ENST00000569931.5:ENST00000566377.5:ENST00000352410.9:ENST00000323744.10:ENST00000535694.5:ENST00000563786.5:ENST00000562800.5:ENST00000564003.5:ENST00000563422.5:ENST00000561470.5:ENST00000562606.5:ENST00000567177.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	59	2	4.9538	5.257915000000001	5.56203	0.0569772	0.00322991	0.154343	0.0319521
chr19	8239785	8239885	7200279	0	+	0.47	(0.45,0.485]	chr19	734186	143	INTRON	INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559490.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	59	2	4.9538	5.257915000000001	5.56203	0.0569772	0.00322991	0.154343	0.0319521
chr7	24854530	24854629	3554714	0	-	0.444444	(0.419,0.45]	chr7	343456	15	INTRON	INTRON	OSBPL3	ENSG00000070882.13	ENST00000313367.7:ENST00000409863.5:ENST00000396431.5:ENST00000409452.5:ENST00000409759.5:ENST00000409555.5:ENST00000396429.5:ENST00000409069.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	63	2	4.85365	5.257885	5.66212	0.0266819	0.0197641	0.111563	0.100774
chr21	35296222	35296322	7659920	0	-	0.39	(0.36,0.39]	chr21	801082	2308	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000475045.6	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	4.56926	5.257820000000001	5.9463800000000004	0.031369	0.0151971	0.127822	0.084474
chr16	81543182	81543282	6508725	0	+	0.56	(0.523,0.58]	chr16	645911	473	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	214	2	3.61635	5.257795	6.89924	0.008462	6.56505e-5	0.0617717	0.00199995
chr16	85372943	85373043	6516800	0	+	0.5	(0.485,0.523]	chr16	646391	136	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	4.60518	5.25779	5.9104	0.0233371	0.0119344	0.110098	0.0741726
chr1	39116406	39116506	93785	0	+	0.45	(0.419,0.45]	chr1	11068	103	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000689911.1:ENST00000567887.5:ENST00000372915.8:ENST00000472385.2:ENST00000693209.1:ENST00000524432.5:ENST00000467673.5:ENST00000688212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	176	2	3.2131	5.2577300000000005	7.30236	0.0423761	4.85572e-5	0.13762	0.00161039
chr3	52444512	52444612	1778656	0	-	0.58	(0.523,0.58]	chr3	185047	2	SS5_PROX	SS5_PROX:INTRON	SEMA3G	ENSG00000010319.7	ENST00000231721.7:ENST00000465657.1:ENST00000475739.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	73	2	4.34118	5.257505	6.17383	0.0372357	0.00760615	0.139793	0.0579698
chr2	239278479	239278579	1391493	0	-	0.51	(0.485,0.523]	chr2	148740	269	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	58	2	5.06999	5.25744	5.44489	0.0445854	0.00377098	0.140478	0.0353672
chr21	15002368	15002467	7640384	0	-	0.454545	(0.45,0.485]	chr21	799111	1	INTRON	INTRON	ENSG00000235609:NRIP1	ENSG00000235609.7:ENSG00000180530.11	ENST00000432230.6:ENST00000400202.5:ENST00000318948.7:ENST00000400199.5:ENST00000638122.1:ENST00000637963.1:ENST00000637630.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	1	131	2	3.9881	5.257195	6.52629	0.00466172	0.0026335	0.044542	0.0278798
chr5	168372033	168372132	2588522	0	+	0.494949	(0.485,0.523]	chr5	256657	1	INTRON	INTRON	WWC1	ENSG00000113645.15	ENST00000265293.9:ENST00000521089.5:ENST00000523043.5:ENST00000519859.1:ENST00000393895.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	5.25048	5.257115	5.26375	0.0335928	0.0059614	0.124319	0.0479866
chr7	77036169	77036269	3399169	0	+	0.52	(0.485,0.523]	chr7	328344	106	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	58	2	5.25048	5.257115	5.26375	0.0335928	0.0059614	0.124319	0.0479866
chr16	75234611	75234699	6644453	0	-	0.556818	(0.523,0.58]	chr16	664407	3	SS5_PROX	SS5_PROX:INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000566982.1:ENST00000563038.5:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	127	2	4.11732	5.257065000000001	6.39681	0.00509616	0.00168626	0.0467496	0.0204375
chr5	87299562	87299662	2479489	0	+	0.34	(0.33,0.36]	chr5	247023	299	INTRON	INTRON	RASA1	ENSG00000145715.15	ENST00000274376.11:ENST00000515800.6:ENST00000456692.6:ENST00000506290.1:ENST00000512763.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	61	2	4.93777	5.257055	5.57634	0.0237329	0.0144674	0.10525	0.0833845
chr11	68330175	68330275	4882259	0	+	0.68	(0.58,1]	chr11	470542	170	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	61	2	4.74346	5.256399999999999	5.76934	0.0121457	0.00849371	0.0754623	0.0617717
chr17	75825404	75825502	6800569	0	+	0.653061	(0.58,1]	chr17	686260	11	UTR3	UTR3:EXON_MRNA	UNK	ENSG00000132478.10	ENST00000589666.6	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.74346	5.256399999999999	5.76934	0.0121457	0.00849371	0.0754623	0.0617717
chr22	46615285	46615385	7744328	0	+	0.61	(0.58,1]	chr22	812034	376	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000447351.5:ENST00000431155.1	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.74346	5.256399999999999	5.76934	0.0121457	0.00849371	0.0754623	0.0617717
chr6	10589413	10589513	2850441	0	+	0.53	(0.523,0.58]	chr6	278695	21	INTRON	INTRON	GCNT2	ENSG00000111846.20	ENST00000410107.5:ENST00000489225.5:ENST00000397423.7:ENST00000495262.7:ENST00000475577.5:ENST00000489819.5:ENST00000474518.1:ENST00000379597.7:ENST00000485764.1:ENST00000461400.1:ENST00000316170.9:ENST00000459872.1:ENST00000265012.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	154	2	3.66398	5.256215	6.84845	0.0167995	7.65992e-5	0.0884836	0.00224403
chr10	18552471	18552570	4642253	0	-	0.343434	(0.33,0.36]	chr10	443321	1	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.17152	5.25617	5.34082	0.0338211	0.00887848	0.124319	0.0618231
chr19	13139091	13139189	7212644	0	+	0.591837	(0.58,1]	chr19	736450	8	UTR3	UTR3:EXON_MRNA	NACC1	ENSG00000160877.6	ENST00000292431.5	protein_coding	protein_coding	protein_coding	protein_coding	2	157	2	4.00946	5.255879999999999	6.5023	0.00194503	4.2872e-4	0.0275844	0.00782374
chr9	107295262	107295361	4210583	0	+	0.373737	(0.36,0.39]	chr9	399873	100	INTRON	INTRON	RAD23B	ENSG00000119318.13	ENST00000419616.5:ENST00000358015.8:ENST00000416373.6:ENST00000442587.1	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.14958	5.255845000000001	5.36211	0.0493212	0.00643924	0.146207	0.0503748
chr10	18573756	18573856	4642466	0	-	0.44	(0.419,0.45]	chr10	443321	214	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.91849	5.25582	5.59315	0.029494	0.0174488	0.116079	0.0928044
chr16	89303025	89303124	6659839	0	-	0.59596	(0.58,1]	chr16	666658	10	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	188	2	3.7217	5.255305	6.7889099999999996	0.00104954	5.10802e-4	0.0194601	0.00886689
chr1	68480286	68480379	506165	0	-	0.204301	[0,0.29]	chr1	60180	6	INTRON	INTRON	DEPDC1	ENSG00000024526.17	ENST00000370966.9:ENST00000456315.7:ENST00000488146.5:ENST00000489862.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	60	2	4.85009	5.2551950000000005	5.6603	0.0124991	0.0113106	0.0765738	0.0722887
chr13	98277898	98277998	5635010	0	+	0.37	(0.36,0.39]	chr13	553480	327	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	1	134	2	4.03367	5.254894999999999	6.47612	0.00632423	0.00272235	0.0524897	0.028553
chr10	124936359	124936459	4605610	0	+	0.4	(0.39,0.419]	chr10	440370	187	INTRON	INTRON	ENSG00000249456	ENSG00000249456.1	ENST00000508096.1	lncRNA	lncRNA	lncRNA	lncRNA	0	59	2	5.14823	5.25489	5.36155	0.0501234	0.00648185	0.147892	0.0503748
chr1	30934042	30934142	434614	0	-	0.58	(0.523,0.58]	chr1	51446	3	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000530669.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	535	2	4.88899	5.25486	5.62073	3.80501e-4	2.04546e-5	0.0111766	8.52848e-4
chr11	64305836	64305933	4868811	0	+	0.71134	(0.58,1]	chr11	467347	1	SS5_PROX	SS5_PROX:INTRON	ESRRA	ENSG00000173153.17	ENST00000406310.6:ENST00000000442.11:ENST00000677967.1:ENST00000539594.5	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.20223	5.25485	5.30747	0.0196049	0.00411607	0.0955413	0.0374453
chr16	961151	961251	6531647	0	-	0.61	(0.58,1]	chr16	648714	61	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1:ENST00000566609.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	56	2	5.20223	5.25485	5.30747	0.0196049	0.00411607	0.0955413	0.0374453
chr9	69004248	69004348	4163756	0	+	0.4	(0.39,0.419]	chr9	395702	126	INTRON	INTRON	PIP5K1B	ENSG00000107242.20	ENST00000265382.8:ENST00000541509.5:ENST00000478500.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	59	2	5.19579	5.2548200000000005	5.31385	0.0469937	0.0071966	0.143232	0.0543014
chr20	25494290	25494389	7539896	0	-	0.59596	(0.58,1]	chr20	787018	24	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5:ENST00000461642.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	388	2	5.13283	5.254735	5.37664	2.98448e-4	9.69494e-6	0.00982269	5.02384e-4
chr16	85590828	85590928	6518981	0	+	0.59	(0.58,1]	chr16	646396	341	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	2	293	2	5.06852	5.254525	5.44053	6.09599e-4	1.68875e-5	0.0144841	7.44477e-4
chr16	73056048	73056147	6627971	0	-	0.575758	(0.523,0.58]	chr16	663553	81	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2:ENST00000397992.5	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.20104	5.254495	5.30795	0.0315825	0.00648051	0.120781	0.0503748
chr9	37971226	37971326	4302798	0	-	0.55	(0.523,0.58]	chr9	411604	148	INTRON	INTRON	SHB	ENSG00000107338.10	ENST00000377707.4	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.20104	5.254495	5.30795	0.0315825	0.00648051	0.120781	0.0503748
chr9	14632028	14632127	4278422	0	-	0.373737	(0.36,0.39]	chr9	408742	120	INTRON	INTRON	ZDHHC21	ENSG00000175893.12	ENST00000380916.9	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.1004	5.254345	5.40829	0.0526991	0.00581205	0.14912	0.0472624
chr16	89293891	89293990	6659744	0	-	0.59596	(0.58,1]	chr16	666648	17	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	119	2	4.55404	5.254289999999999	5.95454	0.0059453	3.19972e-4	0.0506158	0.00635576
chr7	73598573	73598664	3602842	0	-	0.450549	(0.45,0.485]	chr7	347628	5	INTRON	INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	357	2	4.4961	5.254275	6.01245	0.00405026	6.82941e-6	0.0413652	3.94284e-4
chrX	2283914	2284014	7966680	0	-	0.33	(0.29,0.33]	chrX	834344	166	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	5.02395	5.25413	5.48431	0.0445554	0.00360762	0.140478	0.0342681
chr7	78741368	78741468	3619399	0	-	0.48	(0.45,0.485]	chr7	349188	1138	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000629359.2:ENST00000637441.1:ENST00000626691.2:ENST00000522391.3:ENST00000637486.1:ENST00000630991.2:ENST00000628781.1:ENST00000636717.1:ENST00000636993.1:ENST00000676103.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	130	2	4.03897	5.2539	6.46883	0.00516809	0.00230814	0.0472296	0.0255029
chr2	134176853	134176953	895999	0	+	0.52	(0.485,0.523]	chr2	101196	493	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	5.01719	5.253425	5.48966	0.0480495	0.0033837199999999998	0.144601	0.0328791
chr19	6719903	6719995	7322986	0	-	0.413043	(0.39,0.419]	chr19	756567	1	SS5_PROX	SS5_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695652.1:ENST00000594936.2:ENST00000695693.1:ENST00000600744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	59	2	5.09906	5.25339	5.40772	0.0535378	0.00585126	0.150319	0.0474117
chr8	140830071	140830171	4091414	0	-	0.4	(0.39,0.419]	chr8	388848	2	SS5_PROX	SS5_PROX:INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524202.5:ENST00000524357.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	59	2	5.24182	5.253164999999999	5.26451	0.0441194	0.00800901	0.140174	0.0580954
chr1	226944079	226944179	355633	0	+	0.67	(0.58,1]	chr1	40145	31	INTRON	INTRON	COQ8A	ENSG00000163050.18	ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000489044.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	140	2	3.99446	5.25314	6.51182	0.0063152	9.48877e-5	0.0524685	0.00262417
chr21	37463197	37463297	7619942	0	+	0.42	(0.419,0.45]	chr21	796063	65	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	1	135	2	4.20193	5.252865	6.3038	0.00990101	0.00189707	0.0671959	0.0222086
chr17	55277483	55277582	6757233	0	+	0.434343	(0.419,0.45]	chr17	681704	90	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	1060	2	4.80542	5.252805	5.70019	2.50249e-4	2.5952e-5	0.00896672	0.00101533
chr10	133347393	133347493	4783408	0	-	0.62	(0.58,1]	chr10	457516	12	INTRON	INTRON	ENSG00000226699	ENSG00000226699.1	ENST00000452591.1	lncRNA	lncRNA	lncRNA	lncRNA	0	64	2	4.58025	5.252765	5.92528	0.0172566	0.0062948	0.0923809	0.0523832
chr13	112552560	112552659	5752445	0	-	0.484848	(0.45,0.485]	chr13	563939	40	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000464139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	129	2	4.26942	5.2527550000000005	6.23609	0.00778782	0.00125147	0.0590114	0.0166412
chr1	211113974	211114074	654045	0	-	0.44	(0.419,0.45]	chr1	77167	62	INTRON	INTRON	KCNH1	ENSG00000143473.13	ENST00000367007.5:ENST00000638498.1:ENST00000640710.1:ENST00000271751.10:ENST00000639952.1:ENST00000640528.1:ENST00000638960.1:ENST00000640243.1:ENST00000640044.1:ENST00000640566.1:ENST00000640522.1:ENST00000639754.1:ENST00000640890.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	65	2	4.7145	5.252689999999999	5.79088	0.0256236	0.022052	0.115966	0.101502
chr19	15645027	15645122	7215404	0	+	0.442105	(0.419,0.45]	chr19	737139	6	INTRON	INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	65	2	4.7145	5.252689999999999	5.79088	0.0256236	0.022052	0.115966	0.101502
chr7	138510302	138510402	3502504	0	+	0.34	(0.33,0.36]	chr7	337502	55	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	163	2	3.39193	5.25265	7.11337	0.0284825	5.79558e-5	0.115149	0.00182637
chr1	53307379	53307479	486636	0	-	0.57	(0.523,0.58]	chr1	57941	109	INTRON	INTRON	LRP8	ENSG00000157193.18	ENST00000306052.12:ENST00000661457.1:ENST00000668448.1:ENST00000667377.1:ENST00000658277.1:ENST00000662198.1:ENST00000657895.1:ENST00000668071.1:ENST00000480045.6:ENST00000669432.1:ENST00000465675.6:ENST00000371454.6:ENST00000662604.1:ENST00000354412.7:ENST00000658404.1:ENST00000668991.1:ENST00000347547.7:ENST00000655704.1:ENST00000659993.1:ENST00000496580.1:ENST00000654634.1:ENST00000661359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	59	2	4.84569	5.2526399999999995	5.65959	0.0610722	0.0021416	0.158506	0.0240825
chr12	10965944	10966043	5370543	0	-	0.363636	(0.36,0.39]	chr12	526804	7	INTRON	INTRON	ENSG00000275778:PRH1:TAS2R14	ENSG00000275778.2:ENSG00000231887.8:ENSG00000212127.6	ENST00000536668.2:ENST00000535024.6:ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000546317.1:ENST00000381852.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	60	2	4.885	5.2521450000000005	5.61929	0.0697729	0.00359045	0.167185	0.0342681
chr5	78625202	78625298	2703137	0	-	0.520833	(0.485,0.523]	chr5	266654	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	LHFPL2	ENSG00000145685.14	ENST00000380345.7:ENST00000503686.5:ENST00000512759.5:ENST00000515349.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	127	2	4.35375	5.251844999999999	6.14994	0.00788098	9.01016e-4	0.059464500000000003	0.0132389
chr17	55314227	55314326	6757606	0	+	0.353535	(0.33,0.36]	chr17	681718	249	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	181	2	3.42477	5.25161	7.07845	0.00390283	0.00175547	0.0364654	0.0260004
chr3	128619968	128620056	1909860	0	-	0.329545	(0.29,0.33]	chr3	193927	1	UTR3	UTR3:EXON_MRNA	RPN1	ENSG00000163902.12	ENST00000296255.8	protein_coding	protein_coding	protein_coding	protein_coding	6	336	2	3.92357	5.25131	6.57905	0.00319145	1.7836e-4	0.0361193	0.00417314
chr14	76183935	76184035	5890703	0	+	0.39	(0.36,0.39]	chr14	575286	27	INTRON	INTRON	GPATCH2L	ENSG00000089916.18	ENST00000554375.5:ENST00000261530.12:ENST00000312858.9:ENST00000621494.1:ENST00000554799.1:ENST00000553588.1:ENST00000556675.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	60	2	5.04893	5.251265	5.4536	0.0321864	0.0125348	0.121593	0.0765738
chr10	131958444	131958543	4616612	0	+	0.606061	(0.58,1]	chr10	441116	26	UTR3	UTR3:EXON_MRNA	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	118	2	4.10248	5.2510650000000005	6.39965	0.00241374	0.0012583	0.0309229	0.0167083
chr6	159710631	159710731	3300572	0	-	0.5	(0.485,0.523]	chr6	319519	174	INTRON	INTRON	SOD2	ENSG00000112096.19	ENST00000546087.5:ENST00000545162.5:ENST00000535561.5:ENST00000537657.5:ENST00000401980.3	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	4.84611	5.251060000000001	5.65601	0.0608067	0.00224147	0.158506	0.024843
chr7	1488457	1488553	3527943	0	-	0.635417	(0.58,1]	chr7	340775	1	INTRON	INTRON	INTS1	ENSG00000164880.16	ENST00000404767.8:ENST00000468115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	57	2	5.02314	5.2507649999999995	5.47839	0.0145198	0.00638322	0.0823104	0.0501889
chr1	45130307	45130407	463820	0	-	0.32	(0.29,0.33]	chr1	55667	417	INTRON	INTRON	ZSWIM5	ENSG00000162415.7	ENST00000359600.6:ENST00000464588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	5.02042	5.250745	5.48107	0.0222022	0.0103902	0.101857	0.0682598
chr11	70586029	70586129	5060133	0	-	0.52	(0.485,0.523]	chr11	492663	827	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	128	2	4.00429	5.25065	6.49701	0.00420849	0.00233191	0.0421454	0.0257012
chr4	37604858	37604958	2213186	0	-	0.48	(0.45,0.485]	chr4	223561	133	INTRON	INTRON	RELL1	ENSG00000181826.10	ENST00000314117.8	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.81772	5.25051	5.6833	0.0195193	0.0167663	0.0955413	0.0917029
chr17	72539066	72539166	6963701	0	-	0.62	(0.58,1]	chr17	710389	46	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	3	194	2	4.01849	5.25042	6.48235	0.00202884	1.95497e-4	0.0283135	0.00445494
chr1	86884285	86884384	522508	0	-	0.393939	(0.39,0.419]	chr1	61570	32	INTRON	INTRON	SELENOF	ENSG00000183291.18	ENST00000331835.10:ENST00000370554.5:ENST00000648872.1:ENST00000469566.5:ENST00000401030.4:ENST00000497861.5:ENST00000467557.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	59	2	5.04815	5.250305	5.45246	0.0572698	0.00529344	0.154343	0.044517
chr10	133350186	133350286	4783436	0	-	0.59	(0.58,1]	chr10	457517	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000226699	ENSG00000226699.1	ENST00000452591.1	lncRNA	lncRNA	lncRNA	lncRNA	2	158	2	3.64784	5.25016	6.85248	0.00130204	9.12934e-4	0.0180377	0.0171306
chr17	72558821	72558921	6963899	0	-	0.58	(0.523,0.58]	chr17	710389	244	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	132	2	4.67978	5.250085	5.82039	0.0139724	3.43179e-4	0.0805959	0.0067057
chr20	3192221	3192321	7515116	0	-	0.48	(0.45,0.485]	chr20	784522	4	SS3_PROX	SS3_PROX:INTRON	DDRGK1	ENSG00000198171.13	ENST00000354488.8:ENST00000470203.1:ENST00000380201.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	4.89685	5.249915	5.60298	0.0614781	0.00292492	0.158506	0.029882
chr9	114203402	114203502	4226186	0	+	0.47	(0.45,0.485]	chr9	400776	70	INTRON	INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8:ENST00000451716.5:ENST00000494090.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	59	2	4.89685	5.249915	5.60298	0.0614781	0.00292492	0.158506	0.029882
chr2	24325960	24326059	1104407	0	-	0.383838	(0.36,0.39]	chr2	120613	37	INTRON	INTRON	ITSN2	ENSG00000198399.16	ENST00000355123.9:ENST00000361999.7:ENST00000406921.7:ENST00000412011.5:ENST00000443927.5:ENST00000407704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	62	2	4.86249	5.2498450000000005	5.6372	0.024533	0.0181775	0.106796	0.0955836
chr17	76548190	76548288	6977087	0	-	0.346939	(0.33,0.36]	chr17	712268	19	INTRON	INTRON	CYGB:ENSG00000267546	ENSG00000161544.10:ENSG00000267546.2	ENST00000589145.1:ENST00000589963.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	164	2	3.3445	5.249695	7.15489	0.0307153	5.129e-5	0.119442	0.00167326
chr14	89604033	89604133	6030154	0	-	0.38	(0.36,0.39]	chr14	591496	1100	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000555353.5:ENST00000555855.5	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	4.79458	5.249575	5.70457	0.022152	0.0207145	0.102713	0.101784
chr2	239276281	239276381	1391471	0	-	0.61	(0.58,1]	chr2	148740	247	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	56	2	4.94882	5.2493	5.54978	0.0354433	0.00165911	0.127188	0.0202545
chr3	126345684	126345784	1907125	0	-	0.6	(0.58,1]	chr3	193539	14	INTRON	INTRON	KLF15	ENSG00000163884.4	ENST00000296233.4	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.94882	5.2493	5.54978	0.0354433	0.00165911	0.127188	0.0202545
chr12	113303000	113303100	5506535	0	-	0.48	(0.45,0.485]	chr12	542302	3	SS3_PROX	SS3_PROX:INTRON	SLC8B1	ENSG00000089060.12	ENST00000552014.5:ENST00000202831.7:ENST00000680972.1:ENST00000552565.5:ENST00000550672.5:ENST00000550047.5:ENST00000549069.5:ENST00000546737.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	59	2	5.0722	5.249034999999999	5.42587	0.0290571	0.00988295	0.116079	0.0664239
chr9	133851497	133851596	4428913	0	-	0.464646	(0.45,0.485]	chr9	423304	168	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.0722	5.249034999999999	5.42587	0.0290571	0.00988295	0.116079	0.0664239
chrX	44897885	44897985	7871920	0	+	0.48	(0.45,0.485]	chrX	825082	235	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	59	2	5.0722	5.249034999999999	5.42587	0.0290571	0.00988295	0.116079	0.0664239
chr7	138509903	138510003	3502500	0	+	0.56	(0.523,0.58]	chr7	337502	51	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	268	2	2.80204	5.248965	7.69589	0.00526246	4.0569e-4	0.0444841	0.0115298
chr9	124488487	124488587	4402607	0	-	0.39	(0.36,0.39]	chr9	419805	51	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	1	136	2	4.49689	5.248939999999999	6.00099	0.0139273	8.16219e-4	0.0805916	0.0123385
chr7	65963232	65963330	3593954	0	-	0.459184	(0.45,0.485]	chr7	346649	18	INTRON	INTRON	GUSB	ENSG00000169919.17	ENST00000304895.9:ENST00000466883.5:ENST00000430730.5:ENST00000447929.5:ENST00000421103.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	58	2	5.1123	5.248915	5.38553	0.0458344	0.00490471	0.142336	0.0422077
chr6	47624618	47624716	2923910	0	+	0.377551	(0.36,0.39]	chr6	287910	5	UTR3	UTR3:EXON_MRNA	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	2	371	2	5.23157	5.248905	5.26624	0.00120087	9.40473e-5	0.0210159	0.00261888
chr9	4678327	4678425	4269850	0	-	0.408163	(0.39,0.419]	chr9	407889	12	INTRON	INTRON	CDC37L1-DT	ENSG00000273061.2	ENST00000609131.2	lncRNA	lncRNA	lncRNA	lncRNA	0	62	2	4.86193	5.248889999999999	5.63585	0.025023	0.0182739	0.10758	0.0958352
chr2	70936728	70936828	827611	0	+	0.46	(0.45,0.485]	chr2	93298	34	INTRON	INTRON	VAX2	ENSG00000116035.4	ENST00000432367.6:ENST00000646783.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	58	2	5.20906	5.24876	5.28846	0.0399616	0.00612862	0.133954	0.0489549
chr12	132950064	132950164	5542032	0	-	0.58	(0.523,0.58]	chr12	547064	14	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	153	2	3.68393	5.24875	6.81357	0.0162298	8.51182e-5	0.0873195	0.00242869
chr2	43915116	43915214	1135907	0	-	0.561224	(0.523,0.58]	chr2	124282	27	EXON_MRNA	EXON_MRNA:INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000682845.1:ENST00000682295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	58	2	5.14602	5.24863	5.35124	0.0295772	0.00734367	0.116079	0.0550721
chr20	25539888	25539988	7540360	0	-	0.66	(0.58,1]	chr20	787074	129	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.14497	5.248555	5.35214	0.0181452	0.00474658	0.0921579	0.0413976
chr13	33335873	33335973	5685961	0	-	0.39	(0.36,0.39]	chr13	558214	7	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000567873.1	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	4.56076	5.248045	5.93533	0.103289	0.00167855	0.197541	0.0203806
chr6	31409250	31409349	2893049	0	+	0.444444	(0.419,0.45]	chr6	282454	52	INTRON	INTRON	MICA	ENSG00000204520.14	ENST00000616296.4:ENST00000674069.1:ENST00000673996.1:ENST00000673647.1:ENST00000449934.7:ENST00000421350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	192	2	3.24543	5.24798	7.25053	0.00675936	0.00196039	0.0521719	0.0277361
chr12	120854134	120854234	5523825	0	-	0.49	(0.485,0.523]	chr12	544174	186	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.96239	5.2477350000000005	5.53308	0.0518747	0.00304306	0.148503	0.0306636
chr19	323435	323535	7303110	0	-	0.47	(0.45,0.485]	chr19	752407	94	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	1	160	2	4.08045	5.24768	6.41491	0.00868268	0.00034885200000000003	0.0624732	0.00674746
chr4	128862945	128863044	2132118	0	+	0.565657	(0.523,0.58]	chr4	216572	8	UTR3	UTR3:EXON_MRNA:INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.65157	5.24765	5.84373	0.0787008	0.00133116	0.175203	0.0173248
chr7	139304836	139304936	3504702	0	+	0.36	(0.33,0.36]	chr7	337822	71	UTR3	UTR3:EXON_MRNA	UBN2	ENSG00000157741.15	ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	1	132	2	3.97108	5.247575	6.52407	0.00487053	0.00297798	0.0456282	0.0302932
chr12	22635	22734	5355619	0	-	0.606061	(0.58,1]	chr12	524080	38	INTRON	INTRON	WASH8P	ENSG00000226210.3	ENST00000400706.3	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	118	2	4.0743	5.24754	6.42078	0.00230938	0.00136577	0.0302623	0.0176851
chr6	116178176	116178276	2989390	0	+	0.48	(0.45,0.485]	chr6	292828	328	INTRON	INTRON	NT5DC1	ENSG00000178425.14	ENST00000319550.9:ENST00000460749.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	4.77571	5.247495000000001	5.71928	0.0719884	0.00219685	0.168159	0.0245167
chr16	306024	306123	6529567	0	-	0.525253	(0.523,0.58]	chr16	648369	12	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	153	2	3.86955	5.24741	6.62527	0.0117111	1.49357e-4	0.0737098	0.00367368
chr19	37218688	37218775	7252059	0	+	0.413793	(0.39,0.419]	chr19	743295	4	SS5_PROX	SS5_PROX:INTRON	ZNF383	ENSG00000188283.12	ENST00000586068.5:ENST00000585441.5:ENST00000586658.1:ENST00000590503.5:ENST00000684119.1:ENST00000589413.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	61	2	4.76257	5.247255	5.73194	0.0822354	0.00276973	0.179396	0.0286873
chr16	89489193	89489284	6661727	0	-	0.681319	(0.58,1]	chr16	666757	1	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	1198	2	5.15726	5.24699	5.33672	7.18231e-5	5.52344e-7	0.00475775	7.07379e-5
chr19	4334544	4334643	7312816	0	-	0.464646	(0.45,0.485]	chr19	754660	1	INTRON	INTRON	STAP2	ENSG00000178078.12	ENST00000594605.6:ENST00000600324.5:ENST00000599736.5:ENST00000601482.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	66	2	4.59225	5.24696	5.90167	0.0259502	0.0137135	0.116361	0.0799457
chr17	28111705	28111805	6704795	0	+	0.42	(0.419,0.45]	chr17	673022	629	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	59	2	5.18804	5.24676	5.30548	0.051668	0.00792071	0.148503	0.057762
chr2	3293704	3293804	1081044	0	-	0.45	(0.419,0.45]	chr2	117633	110	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	59	2	5.18804	5.24676	5.30548	0.051668	0.00792071	0.148503	0.057762
chr5	37031895	37031994	2402344	0	+	0.434343	(0.419,0.45]	chr5	240003	41	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.18804	5.24676	5.30548	0.051668	0.00792071	0.148503	0.057762
chr5	74823774	74823873	2692294	0	-	0.373737	(0.36,0.39]	chr5	265977	94	INTRON	INTRON	FAM169A	ENSG00000198780.13	ENST00000389156.9:ENST00000510496.5:ENST00000687041.1:ENST00000514215.5:ENST00000510609.5:ENST00000513277.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	134	2	3.9606	5.24671	6.53282	0.00573632	0.00326569	0.0499133	0.0321244
chr10	77891503	77891603	4719280	0	-	0.53	(0.523,0.58]	chr10	450278	21	INTRON	INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7	protein_coding	protein_coding	protein_coding	protein_coding	1	127	2	4.44549	5.246705	6.04792	0.00948306	6.76791e-4	0.0656057	0.0108252
chr2	72336019	72336119	1183284	0	-	0.38	(0.36,0.39]	chr2	128659	6	INTRON	INTRON	EXOC6B	ENSG00000144036.16	ENST00000272427.11:ENST00000490919.5:ENST00000634650.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	4.99672	5.24657	5.49642	0.0604395	0.00476539	0.158506	0.0414441
chr6	166955483	166955555	3302049	0	-	0.541667	(0.523,0.58]	chr6	319754	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000358165.7:ENST00000683158.1:ENST00000683333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	661	2	3.72444	5.2465	6.76856	0.00470358	3.30025e-5	0.0413976	0.00320976
chr5	140706221	140706314	2553292	0	+	0.473118	(0.45,0.485]	chr5	253724	6	UTR3	UTR3:EXON_MRNA	ZMAT2	ENSG00000146007.11	ENST00000274712.8	protein_coding	protein_coding	protein_coding	protein_coding	1	129	2	4.06374	5.246475	6.42921	0.00554658	0.00216361	0.0492398	0.0242699
chr1	121555620	121555717	228491	0	+	0.453608	(0.45,0.485]	chr1	25134	25	INTRON	INTRON	EMBP1	ENSG00000231752.7	ENST00000622787.4:ENST00000648011.2:ENST00000618253.1:ENST00000692042.1:ENST00000458200.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	58	2	5.23735	5.246225	5.2551	0.0373953	0.00687715	0.130656	0.0526888
chr1	230128226	230128326	360029	0	+	0.48	(0.45,0.485]	chr1	40627	363	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	5.23735	5.246225	5.2551	0.0373953	0.00687715	0.130656	0.0526888
chr19	48903168	48903265	7280375	0	+	0.474227	(0.45,0.485]	chr19	748036	17	INTRON	INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000443560.1:ENST00000411700.5:ENST00000451312.5:ENST00000424608.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	58	2	5.23735	5.246225	5.2551	0.0373953	0.00687715	0.130656	0.0526888
chrX	2383660	2383759	7967680	0	-	0.474747	(0.45,0.485]	chrX	834355	453	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	5.23735	5.246225	5.2551	0.0373953	0.00687715	0.130656	0.0526888
chr1	148566451	148566542	582354	0	-	0.450549	(0.45,0.485]	chr1	67078	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF14	ENSG00000270629.7	ENST00000619423.4:ENST00000614999.4:ENST00000621066.4:ENST00000611826.4:ENST00000616120.4:ENST00000621070.4	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.95056	5.24621	5.54186	0.0243502	0.0127826	0.106588	0.0773423
chr10	75473310	75473410	4520891	0	+	0.5	(0.485,0.523]	chr10	432249	217	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.65198	5.24606	5.84014	0.0783889	0.00139792	0.175203	0.0179863
chr4	120750657	120750757	2317080	0	-	0.38	(0.36,0.39]	chr4	232855	185	INTRON	INTRON	PRDM5	ENSG00000138738.11	ENST00000264808.8:ENST00000515109.5:ENST00000428209.6:ENST00000505484.5:ENST00000506065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	59	2	5.16105	5.246055	5.33106	0.0383628	0.00993384	0.131324	0.0666221
chrX	27234228	27234328	7999186	0	-	0.4	(0.39,0.419]	chrX	836656	472	INTRON	INTRON	ENSG00000228933	ENSG00000228933.8	ENST00000422048.5:ENST00000669376.1	lncRNA	lncRNA	lncRNA	lncRNA	0	61	2	4.92679	5.245984999999999	5.56518	0.027797	0.0160946	0.112962	0.0896852
chr20	32131513	32131612	7454389	0	+	0.555556	(0.523,0.58]	chr20	775905	150	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000442842.5:ENST00000450829.5:ENST00000217315.9:ENST00000417389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	453	2	4.88684	5.24598	5.60512	3.93075e-4	4.42616e-5	0.0113656	0.00150568
chr6	677842	677942	3078945	0	-	0.42	(0.419,0.45]	chr6	299429	202	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9:ENST00000443083.5	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.09133	5.245335	5.39934	0.0586308	0.00646489	0.155565	0.0503748
chr7	139705642	139705741	3723202	0	-	0.424242	(0.419,0.45]	chr7	357498	736	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.09133	5.245335	5.39934	0.0586308	0.00646489	0.155565	0.0503748
chr10	18559466	18559566	4642323	0	-	0.4	(0.39,0.419]	chr10	443321	71	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	4.72276	5.245165	5.76757	0.0238104	0.0204917	0.111436	0.0979776
chr7	29342188	29342287	3335771	0	+	0.434343	(0.419,0.45]	chr7	322868	57	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5:ENST00000222792.11:ENST00000409350.5:ENST00000409964.6:ENST00000409922.5:ENST00000412536.5:ENST00000478128.6:ENST00000482820.6:ENST00000483081.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	165	2	3.56008	5.245150000000001	6.93022	0.0250979	1.38812e-4	0.107672	0.00347953
chr7	105733297	105733397	3670252	0	-	0.31	(0.29,0.33]	chr7	353945	418	INTRON	INTRON	ATXN7L1	ENSG00000146776.15	ENST00000419735.8	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.72635	5.24513	5.76391	0.0672935	0.0018044	0.163263	0.0215053
chr10	24719050	24719150	4649093	0	-	0.45	(0.419,0.45]	chr10	443728	43	INTRON	INTRON	ARHGAP21	ENSG00000107863.20	ENST00000612832.4:ENST00000396432.7:ENST00000376410.7:ENST00000446003.5:ENST00000476499.1:ENST00000416305.1:ENST00000472150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	59	2	5.23407	5.24511	5.25615	0.0486006	0.00879729	0.145074	0.0615125
chr14	21094174	21094232	5930852	0	-	0.431034	(0.419,0.45]	chr14	581034	1	SS5_PROX	SS5_PROX:INTRON	ZNF219	ENSG00000165804.16	ENST00000360947.8:ENST00000451119.6:ENST00000421093.6:ENST00000555270.5:ENST00000554478.5:ENST00000556174.5:ENST00000554923.1:ENST00000553980.1:ENST00000556944.1:ENST00000555697.1:ENST00000556101.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	59	2	5.23407	5.24511	5.25615	0.0486006	0.00879729	0.145074	0.0615125
chr9	93661733	93661829	4184515	0	+	0.4375	(0.419,0.45]	chr9	397767	8	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.23407	5.24511	5.25615	0.0486006	0.00879729	0.145074	0.0615125
chr9	129340276	129340371	4250340	0	+	0.442105	(0.419,0.45]	chr9	404662	10	INTRON	INTRON	LINC01503	ENSG00000233901.7	ENST00000427109.2:ENST00000654735.1:ENST00000654190.1:ENST00000657886.1:ENST00000661745.1:ENST00000436710.6:ENST00000660635.1:ENST00000657651.1:ENST00000665063.2:ENST00000667257.1:ENST00000690929.1:ENST00000654148.1:ENST00000444125.3:ENST00000666671.1:ENST00000660036.1:ENST00000657393.1:ENST00000659864.1	lncRNA	lncRNA	lncRNA	lncRNA	0	59	2	5.23407	5.24511	5.25615	0.0486006	0.00879729	0.145074	0.0615125
chr11	33343166	33343264	4838355	0	+	0.295918	(0.29,0.33]	chr11	462635	11	INTRON	INTRON	HIPK3	ENSG00000110422.12	ENST00000525975.5:ENST00000303296.9:ENST00000379016.7:ENST00000456517.2	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.82544	5.245095	5.66475	0.0164475	0.0156279	0.0877632	0.0877396
chr1	220758793	220758891	345819	0	+	0.357143	(0.33,0.36]	chr1	38728	20	INTRON	INTRON	MTARC2	ENSG00000117791.16	ENST00000359316.6:ENST00000366913.8:ENST00000425560.1:ENST00000496078.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	157	2	3.74235	5.24505	6.74775	0.0159829	1.66494e-4	0.0863908	0.00397356
chr13	50947389	50947486	5602114	0	+	0.319588	(0.29,0.33]	chr13	551847	15	INTRON	INTRON	RNASEH2B	ENSG00000136104.21	ENST00000422660.6:ENST00000646731.1:ENST00000645188.1:ENST00000643774.1:ENST00000646279.1:ENST00000646960.1:ENST00000336617.8:ENST00000644297.1:ENST00000644034.1:ENST00000645955.1:ENST00000643682.1:ENST00000644518.1:ENST00000642721.1:ENST00000616907.2:ENST00000644420.1:ENST00000645990.1:ENST00000642995.1:ENST00000646092.1:ENST00000644183.1:ENST00000644425.1:ENST00000643159.1:ENST00000645618.1:ENST00000611510.5:ENST00000642454.1:ENST00000646709.1:ENST00000647387.1:ENST00000645712.1:ENST00000645333.1:ENST00000643215.1:ENST00000495244.7:ENST00000642207.1:ENST00000645370.1:ENST00000459681.3:ENST00000646339.1:ENST00000646964.1:ENST00000643405.1:ENST00000613449.4:ENST00000621641.1:ENST00000643529.1:ENST00000645201.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	62	2	4.58769	5.244995	5.9023	0.0806047	0.00126253	0.177452	0.0167512
chr19	2440423	2440522	7309590	0	-	0.50505	(0.485,0.523]	chr19	753890	15	INTRON	INTRON	LMNB2	ENSG00000176619.13	ENST00000325327.4	protein_coding	protein_coding	protein_coding	protein_coding	1	134	2	3.7132	5.244885	6.77657	0.00492265	0.00248912	0.0423296	0.0315244
chr11	70684808	70684908	5061127	0	-	0.54	(0.523,0.58]	chr11	492688	148	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	65	2	4.60868	5.2447	5.88072	0.0226775	0.0126258	0.108193	0.0761905
chr5	146150973	146151070	2784254	0	-	0.412371	(0.39,0.419]	chr5	272991	9	INTRON	INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000508667.5:ENST00000507095.1:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	179	2	3.61317	5.2446	6.87603	0.00322454	0.0025863	0.0362983	0.0276257
chr17	72556626	72556726	6963877	0	-	0.39	(0.36,0.39]	chr17	710389	222	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	142	2	4.7199	5.244415	5.76893	0.0200694	4.44374e-4	0.0971995	0.00805861
chr11	61775755	61775855	4862734	0	+	0.6	(0.58,1]	chr11	466038	3	SS3_PROX	SS3_PROX:INTRON	MYRF	ENSG00000124920.14	ENST00000278836.10:ENST00000265460.9:ENST00000675319.1	protein_coding	protein_coding	protein_coding	protein_coding	0	71	2	4.29454	5.24437	6.1942	0.0305531	0.00368616	0.126768	0.0389784
chr1	35887030	35887130	89528	0	+	0.52	(0.485,0.523]	chr1	10417	32	INTRON	INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5:ENST00000373204.6:ENST00000674426.1:ENST00000674304.1	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.83072	5.244315	5.65791	0.0181582	0.0148956	0.0921579	0.0847741
chr6	36679439	36679528	2906383	0	+	0.617977	(0.58,1]	chr6	285235	1	INTRON	INTRON	CDKN1A	ENSG00000124762.14	ENST00000615513.4:ENST00000448526.6:ENST00000459970.1:ENST00000405375.5:ENST00000244741.10:ENST00000373711.3:ENST00000478800.1:ENST00000462537.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	156	2	4.02619	5.244154999999999	6.46212	0.00211728	4.06616e-4	0.028892	0.00755833
chr12	112466360	112466460	5331955	0	+	0.47	(0.45,0.485]	chr12	520177	90	INTRON	INTRON	PTPN11	ENSG00000179295.19	ENST00000688597.1:ENST00000692624.1:ENST00000685487.1:ENST00000690210.1:ENST00000639857.2:ENST00000392597.5:ENST00000687906.1:ENST00000351677.7:ENST00000635625.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	64	2	4.49786	5.244005	5.99015	0.101311	0.00110015	0.196131	0.015136
chr18	35606875	35606975	7046890	0	+	0.46	(0.45,0.485]	chr18	719466	147	INTRON	INTRON	GALNT1	ENSG00000141429.14	ENST00000586725.1:ENST00000269195.6:ENST00000591924.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	4.49786	5.244005	5.99015	0.101311	0.00110015	0.196131	0.015136
chr16	8640730	8640830	6381027	0	+	0.56	(0.523,0.58]	chr16	631104	2	SS3_PROX	SS3_PROX:INTRON	METTL22	ENSG00000067365.15	ENST00000163678.11:ENST00000381920.8:ENST00000561758.5:ENST00000568967.5:ENST00000572956.5:ENST00000561993.5:ENST00000563501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	62	2	4.7629	5.243885000000001	5.72487	0.0167014	0.0163679	0.0917029	0.0875379
chr22	50706552	50706652	7755250	0	+	0.55	(0.523,0.58]	chr22	812776	4	SS5_PROX	SS5_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	62	2	4.7629	5.243885000000001	5.72487	0.0167014	0.0163679	0.0917029	0.0875379
chr17	80275290	80275390	6807317	0	+	0.45	(0.419,0.45]	chr17	687364	15	INTRON	INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000319921.4	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.87598	5.243145	5.61031	0.0768574	0.004032	0.174882	0.0371291
chr3	111894910	111895010	1535907	0	+	0.35	(0.33,0.36]	chr3	162967	91	INTRON	INTRON	PHLDB2	ENSG00000144824.21	ENST00000393923.7:ENST00000412622.5:ENST00000431670.7:ENST00000498699.5:ENST00000477695.5:ENST00000393925.7:ENST00000481953.5:ENST00000478733.6	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.80497	5.24303	5.68109	0.0201622	0.0188359	0.0980631	0.0973366
chr22	45291602	45291700	7738865	0	+	0.510204	(0.485,0.523]	chr22	811371	21	INTRON	INTRON	UPK3A	ENSG00000100373.10	ENST00000216211.9:ENST00000396082.2	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.8987	5.242965	5.58723	0.0203514	0.0129327	0.0979211	0.0778105
chr1	30934242	30934342	434616	0	-	0.39	(0.36,0.39]	chr1	51446	5	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000530669.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	214	2	3.4429	5.242805	7.04271	0.00232085	0.00225468	0.030354	0.0249877
chr13	40649814	40649913	5693165	0	-	0.343434	(0.33,0.36]	chr13	558757	162	INTRON	INTRON	FOXO1	ENSG00000150907.10	ENST00000379561.6:ENST00000655267.1:ENST00000660760.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	4.8729	5.2425049999999995	5.61211	0.022456	0.0164782	0.102751	0.091341
chr9	83779583	83779682	4326842	0	-	0.343434	(0.33,0.36]	chr9	413247	103	INTRON	INTRON	GKAP1	ENSG00000165113.13	ENST00000376371.7:ENST00000376365.7:ENST00000388782.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	61	2	4.8729	5.2425049999999995	5.61211	0.022456	0.0164782	0.102751	0.091341
chr19	4335435	4335534	7312825	0	-	0.515152	(0.485,0.523]	chr19	754660	10	INTRON	INTRON	STAP2	ENSG00000178078.12	ENST00000594605.6:ENST00000600324.5:ENST00000599736.5:ENST00000601482.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	62	2	4.75939	5.242345	5.7253	0.0172254	0.0162644	0.0923809	0.0873195
chr7	73597713	73597813	3602833	0	-	0.66	(0.58,1]	chr7	347626	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	155	2	3.88652	5.242325	6.59813	0.00158605	6.2995e-4	0.0245893	0.0102646
chr1	183070875	183070975	300341	0	+	0.44	(0.419,0.45]	chr1	34079	464	INTRON	INTRON	LAMC1	ENSG00000135862.6	ENST00000258341.5	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	4.62273	5.242285	5.86184	0.103601	0.00223565	0.197541	0.024843
chr16	85587532	85587631	6518948	0	+	0.616162	(0.58,1]	chr16	646396	308	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.89007	5.2422699999999995	5.59447	0.0117666	0.00872525	0.0737098	0.0612699
chr5	60333882	60333982	2677492	0	-	0.43	(0.419,0.45]	chr5	264422	299	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000502484.6:ENST00000509355.5:ENST00000506024.5:ENST00000506510.6:ENST00000511382.1:ENST00000505507.6:ENST00000514552.5:ENST00000515835.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	60	2	5.04004	5.242255	5.44447	0.0364384	0.0137308	0.128173	0.0814223
chr22	50233826	50233926	7827199	0	-	0.45	(0.419,0.45]	chr22	821199	3	SS3_PROX	SS3_PROX:INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	59	2	5.04043	5.24225	5.44407	0.0625897	0.00585948	0.160305	0.0474117
chr9	93662213	93662309	4184520	0	+	0.447917	(0.419,0.45]	chr9	397767	13	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.04043	5.24225	5.44407	0.0625897	0.00585948	0.160305	0.0474117
chr14	89204534	89204634	6026140	0	-	0.31	(0.29,0.33]	chr14	591423	137	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000555010.1:ENST00000557718.5:ENST00000553353.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	127	2	4.37749	5.242205	6.10692	0.00765507	8.77694e-4	0.0582978	0.0129747
chr2	25329816	25329915	1105862	0	-	0.616162	(0.58,1]	chr2	120785	7	INTRON	INTRON	DNMT3A	ENSG00000119772.19	ENST00000264709.7:ENST00000321117.10:ENST00000380756.7:ENST00000406659.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	4.54927	5.242005	5.93474	0.0643046	5.58693e-4	0.161669	0.00944382
chr2	111421109	111421209	1252847	0	-	0.55	(0.523,0.58]	chr2	134896	428	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1	lncRNA	lncRNA	lncRNA	lncRNA	0	58	2	4.905	5.2419	5.5788	0.0563605	0.00262418	0.154188	0.0278348
chr2	239370902	239371002	1392421	0	-	0.54	(0.523,0.58]	chr2	148759	176	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	58	2	4.905	5.2419	5.5788	0.0563605	0.00262418	0.154188	0.0278348
chr9	123884417	123884517	4401438	0	-	0.44	(0.419,0.45]	chr9	419733	50	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.20508	5.24188	5.27868	0.0457732	0.00979452	0.142336	0.0664239
chr1	7499400	7499500	15604	0	+	0.45	(0.419,0.45]	chr1	1895	311	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	4.38804	5.24161	6.09518	0.0451818	0.0138177	0.154539	0.0803169
chr7	137999058	137999158	3720693	0	-	0.34	(0.33,0.36]	chr7	357307	653	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.05937	5.24152	5.42367	0.0299185	0.0112642	0.116945	0.071709
chr16	81628388	81628488	6509581	0	+	0.55	(0.523,0.58]	chr16	645926	63	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.08882	5.241045	5.39327	0.0277354	0.00834774	0.112851	0.0598672
chr18	79146646	79146745	7097716	0	+	0.535354	(0.523,0.58]	chr18	722822	24	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000586672.5:ENST00000590271.5:ENST00000490210.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	58	2	5.08882	5.241045	5.39327	0.0277354	0.00834774	0.112851	0.0598672
chr3	52235406	52235506	1777931	0	-	0.56	(0.523,0.58]	chr3	184832	3	SS3_PROX	SS3_PROX:INTRON	TWF2	ENSG00000247596.10	ENST00000305533.10:ENST00000678838.1:ENST00000679296.1:ENST00000676989.1:ENST00000678549.1:ENST00000678882.1:ENST00000678700.1:ENST00000676800.1:ENST00000677127.1:ENST00000678681.1:ENST00000499914.2:ENST00000472755.2:ENST00000678330.1:ENST00000676988.1:ENST00000677058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	58	2	5.08882	5.241045	5.39327	0.0277354	0.00834774	0.112851	0.0598672
chr6	158544341	158544441	3063736	0	+	0.56	(0.523,0.58]	chr6	297682	71	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.08882	5.241045	5.39327	0.0277354	0.00834774	0.112851	0.0598672
chr12	23950468	23950568	5388534	0	-	0.42	(0.419,0.45]	chr12	528205	2	SS5_PROX	SS5_PROX:INTRON	SOX5	ENSG00000134532.19	ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2:ENST00000536729.2:ENST00000446891.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	214	2	4.60145	5.240945	5.88044	0.0192645	1.89157e-4	0.0954446	0.0043642
chr2	36431063	36431163	758392	0	+	0.44	(0.419,0.45]	chr2	87976	339	INTRON	INTRON	CRIM1	ENSG00000150938.10	ENST00000280527.7:ENST00000426856.1	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.85365	5.24085	5.62805	0.0280406	0.0197641	0.113651	0.100774
chr2	162288952	162289050	1294587	0	-	0.387755	(0.36,0.39]	chr2	139034	2	INTRON	INTRON	IFIH1	ENSG00000115267.9	ENST00000649979.2:ENST00000679938.1:ENST00000649554.1:ENST00000648433.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	4.98942	5.24083	5.49224	0.0304242	0.0141427	0.11845	0.0833845
chr19	18443457	18443557	7347615	0	-	0.6	(0.58,1]	chr19	761434	9	UTR3	UTR3:EXON_MRNA	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	157	2	4.58063	5.24059	5.90055	0.001823	6.1741e-4	0.0266071	0.0101143
chr17	77485525	77485625	6805237	0	+	0.37	(0.36,0.39]	chr17	686821	15	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	133	2	4.35204	5.240575	6.12911	0.0113159	0.00120025	0.0722887	0.016121
chr17	80025401	80025500	6982170	0	-	0.636364	(0.58,1]	chr17	713081	114	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.08534	5.2404	5.39546	0.0168207	0.00549379	0.0884836	0.0454065
chr7	221947	222047	3305874	0	+	0.66	(0.58,1]	chr7	320161	126	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.08534	5.2404	5.39546	0.0168207	0.00549379	0.0884836	0.0454065
chr8	143487246	143487346	4096465	0	-	0.64	(0.58,1]	chr8	389272	19	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6:ENST00000528401.1	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.08534	5.2404	5.39546	0.0168207	0.00549379	0.0884836	0.0454065
chr15	30639884	30639979	6070945	0	+	0.315789	(0.29,0.33]	chr15	596498	2	INTRON	INTRON	ENSG00000284906:ARHGAP11B	ENSG00000284906.3:ENSG00000285077.3	ENST00000564902.5:ENST00000428041.4:ENST00000693711.1:ENST00000685924.1:ENST00000563110.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	169	2	3.76221	5.24036	6.71851	0.00244027	0.00139776	0.0311536	0.0179863
chr18	77128543	77128643	7181608	0	-	0.36	(0.33,0.36]	chr18	730193	7	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	4.73368	5.240304999999999	5.74693	0.0216127	0.0181681	0.105648	0.0921579
chr1	52087054	52087153	124747	0	+	0.363636	(0.36,0.39]	chr1	15535	4	UTR3	UTR3:EXON_MRNA	BTF3L4	ENSG00000134717.18	ENST00000489308.6:ENST00000313334.13:ENST00000472944.6	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	4.94194	5.240245	5.53855	0.064883	0.00432809	0.162218	0.0389438
chr7	141621431	141621531	3509350	0	+	0.38	(0.36,0.39]	chr7	338259	3	SS3_PROX	SS3_PROX:INTRON	AGK	ENSG00000006530.18	ENST00000629555.2:ENST00000473247.5:ENST00000649365.1:ENST00000649014.1:ENST00000650365.1:ENST00000648489.1:ENST00000649286.2:ENST00000648690.1:ENST00000649790.1:ENST00000473884.5:ENST00000649914.1:ENST00000647568.1:ENST00000648395.1:ENST00000648068.1:ENST00000650547.1:ENST00000650006.1:ENST00000494688.1:ENST00000647898.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	59	2	4.94194	5.240245	5.53855	0.064883	0.00432809	0.162218	0.0389438
chr7	116984044	116984144	3452119	0	+	0.44	(0.419,0.45]	chr7	334380	156	INTRON	INTRON	ST7:ENSG00000288635:ST7-OT4	ENSG00000004866.22:ENSG00000288635.1:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000421345.5:ENST00000471110.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	1	142	2	4.659	5.2401800000000005	5.82136	0.0210659	5.72525e-4	0.0996078	0.00960668
chr1	1717951	1718048	382887	0	-	0.484536	(0.45,0.485]	chr1	43594	11	INTRON	INTRON	CDK11A:ENSG00000268575	ENSG00000008128.23:ENSG00000268575.1	ENST00000404249.8:ENST00000356200.7:ENST00000598846.1:ENST00000357760.6:ENST00000358779.9:ENST00000378633.5:ENST00000460465.5:ENST00000509982.5:ENST00000378638.6:ENST00000356937.7:ENST00000479362.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	0	59	2	4.83755	5.240175000000001	5.6428	0.06646	0.00265386	0.162385	0.027979
chr14	23093944	23094044	5939172	0	-	0.35	(0.33,0.36]	chr14	582243	4	SS3_PROX	SS3_PROX:INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000262710.5:ENST00000457657.5:ENST00000555053.5	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.77355	5.23993	5.70631	0.0735809	0.00260751	0.17026	0.0278222
chr2	20002180	20002280	1096451	0	-	0.54	(0.523,0.58]	chr2	119566	1	SS3_PROX	SS3_PROX:INTRON	MATN3	ENSG00000132031.13	ENST00000407540.8:ENST00000421259.2	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	4.96714	5.2398050000000005	5.51247	0.0230387	0.0108948	0.102982	0.0706366
chr22	50682741	50682839	7754997	0	+	0.540816	(0.523,0.58]	chr22	812716	30	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	125	2	4.21238	5.239789999999999	6.2672	0.00644151	0.0013008	0.0530091	0.0171237
chr11	70682214	70682314	5061101	0	-	0.61	(0.58,1]	chr11	492688	122	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	4.74346	5.239739999999999	5.73602	0.0121457	0.00904546	0.0754623	0.0637469
chr17	4853318	4853418	6672086	0	+	0.6	(0.58,1]	chr17	668609	193	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	60	2	4.74346	5.239739999999999	5.73602	0.0121457	0.00904546	0.0754623	0.0637469
chr2	46383975	46384075	785532	0	+	0.61	(0.58,1]	chr2	89828	1	SS3_PROX	SS3_PROX:INTRON	EPAS1	ENSG00000116016.14	ENST00000263734.5:ENST00000466465.5:ENST00000468530.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	60	2	4.74346	5.239739999999999	5.73602	0.0121457	0.00904546	0.0754623	0.0637469
chr5	81084811	81084909	2469489	0	+	0.520408	(0.485,0.523]	chr5	246588	37	INTRON	INTRON	RASGRF2	ENSG00000113319.13	ENST00000265080.9:ENST00000503795.1:ENST00000638442.1:ENST00000502677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	165	2	3.16729	5.23954	7.31179	0.0380541	1.95061e-5	0.131324	8.25524e-4
chr15	64166476	64166575	6298839	0	-	0.515152	(0.485,0.523]	chr15	620743	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CSNK1G1	ENSG00000169118.18	ENST00000303052.13:ENST00000607537.6:ENST00000561349.6	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.08528	5.239485	5.39369	0.0275819	0.0086528	0.112782	0.0612699
chr15	78068316	78068416	6336533	0	-	0.46	(0.45,0.485]	chr15	624607	23	INTRON	INTRON	TBC1D2B	ENSG00000167202.12	ENST00000300584.8:ENST00000409931.7	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.01267	5.239125	5.46558	0.0273644	0.011221	0.112372	0.071709
chr14	103106684	103106784	5921886	0	+	0.61	(0.58,1]	chr14	579223	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	116	2	4.23567	5.23906	6.24245	0.00334087	8.49275e-4	0.0368376	0.0126615
chr1	149986268	149986368	585129	0	-	0.32	(0.29,0.33]	chr1	67589	83	INTRON	INTRON	OTUD7B	ENSG00000264522.6	ENST00000581312.6:ENST00000417191.2	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	4.95831	5.239015	5.51972	0.0208628	0.0118616	0.0991037	0.0746945
chr3	60424416	60424516	1797851	0	-	0.36	(0.33,0.36]	chr3	186807	3437	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.0592	5.239	5.4188	0.0504445	0.00513015	0.148216	0.0435186
chr6	13590307	13590403	2855850	0	+	0.354167	(0.33,0.36]	chr6	279046	9	INTRON	INTRON	SIRT5	ENSG00000124523.17	ENST00000680432.1:ENST00000681012.1:ENST00000397350.7:ENST00000680442.1:ENST00000680754.1:ENST00000679658.1:ENST00000681243.1:ENST00000680747.1:ENST00000681818.1:ENST00000680402.1:ENST00000679663.1:ENST00000379250.10:ENST00000680852.1:ENST00000679922.1:ENST00000681231.1:ENST00000359782.8:ENST00000606117.2:ENST00000379262.8:ENST00000681905.1:ENST00000680937.1:ENST00000680151.1:ENST00000680707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	58	2	5.0592	5.239	5.4188	0.0504445	0.00513015	0.148216	0.0435186
chr5	14382749	14382848	2385771	0	+	0.414141	(0.39,0.419]	chr5	238593	11	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000512070.6:ENST00000509967.6:ENST00000513206.5:ENST00000515144.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	59	2	5.10551	5.238614999999999	5.37172	0.0367885	0.0112089	0.129052	0.071709
chr22	36001149	36001249	7805553	0	-	0.39	(0.36,0.39]	chr22	817798	396	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1	protein_coding	protein_coding	protein_coding	protein_coding	2	359	2	4.98581	5.238125	5.49044	0.00191204	4.86494e-5	0.0273955	0.00161312
chr7	116901801	116901900	3451588	0	+	0.282828	[0,0.29]	chr7	334308	26	INTRON	INTRON	CAPZA2	ENSG00000198898.15	ENST00000414148.6:ENST00000361183.8:ENST00000449080.5:ENST00000426421.5:ENST00000490693.5:ENST00000417431.5:ENST00000464669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	57	2	5.04518	5.238020000000001	5.43086	0.0170186	0.00813784	0.0889995	0.0588114
chr6	143704036	143704136	3018350	0	+	0.48	(0.45,0.485]	chr6	294995	255	INTRON	INTRON	PHACTR2	ENSG00000112419.15	ENST00000367584.8:ENST00000427704.6:ENST00000305766.10:ENST00000440869.7:ENST00000367582.7:ENST00000402863.3:ENST00000451827.6:ENST00000542769.5:ENST00000397980.3:ENST00000545919.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	132	2	3.82378	5.23793	6.65208	0.0039984	0.00371059	0.039096	0.0370532
chr18	76424559	76424659	7179365	0	-	0.56	(0.523,0.58]	chr18	730080	439	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	1	125	2	4.14168	5.23757	6.33346	0.00571732	0.00157839	0.0498083	0.0195793
chr1	1064105	1064205	1381	0	+	0.68	(0.58,1]	chr1	319	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000217801	ENSG00000217801.11	ENST00000688131.1:ENST00000456409.6:ENST00000692821.1:ENST00000394517.7:ENST00000427998.6:ENST00000685011.1:ENST00000692266.1:ENST00000412397.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	55	2	5.11355	5.23754	5.36153	0.0271806	0.00273899	0.112113	0.028553
chr7	74495308	74495408	3391780	0	+	0.63	(0.58,1]	chr7	327343	408	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.11355	5.23754	5.36153	0.0271806	0.00273899	0.112113	0.028553
chr2	239370302	239370402	1392415	0	-	0.55	(0.523,0.58]	chr2	148759	170	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	57	2	5.1205	5.23751	5.35452	0.0416463	0.00453096	0.136301	0.0400651
chr2	239279678	239279778	1391505	0	-	0.67	(0.58,1]	chr2	148740	281	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	55	2	5.16453	5.237445	5.31036	0.0249802	0.00312721	0.10758	0.0311915
chr7	102047441	102047541	3436289	0	+	0.53	(0.523,0.58]	chr7	332534	189	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	57	2	5.16969	5.23742	5.30515	0.0387762	0.00509102	0.131324	0.0433513
chr16	85377741	85377841	6516848	0	+	0.62	(0.58,1]	chr16	646391	184	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	4.49116	5.23719	5.98322	0.0207449	0.00562007	0.102713	0.0493906
chr8	130428599	130428699	4083488	0	-	0.51	(0.485,0.523]	chr8	388192	9	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000524299.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	126	2	4.37429	5.237165	6.10004	0.00860355	8.506e-4	0.0623467	0.0126678
chr16	20684875	20684975	6416307	0	+	0.41	(0.39,0.419]	chr16	634386	28	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	1891	2	4.89245	5.23715	5.58185	2.61384e-4	6.22969e-6	0.00915593	3.68139e-4
chr11	70786750	70786850	5062149	0	-	0.45	(0.419,0.45]	chr11	492701	689	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	5.15214	5.237045	5.32195	0.0431627	0.0109324	0.138403	0.0706366
chrX	132058291	132058390	7953390	0	+	0.444444	(0.419,0.45]	chrX	832056	24	INTRON	INTRON	STK26	ENSG00000134602.16	ENST00000354719.10:ENST00000394334.7:ENST00000481105.5:ENST00000394335.6:ENST00000496850.1	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.15214	5.237045	5.32195	0.0431627	0.0109324	0.138403	0.0706366
chrY	14603113	14603213	8141466	0	+	0.43	(0.419,0.45]	chrY	848284	778	INTRON	INTRON	NLGN4Y	ENSG00000165246.15	ENST00000643089.1:ENST00000471252.1:ENST00000382872.5:ENST00000355905.6:ENST00000382868.5:ENST00000476359.1:ENST00000645399.1:ENST00000684976.1:ENST00000481089.1:ENST00000339174.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	5.15214	5.237045	5.32195	0.0431627	0.0109324	0.138403	0.0706366
chr14	52684107	52684207	5981015	0	-	0.52	(0.485,0.523]	chr14	586513	2	SS3_PROX	SS3_PROX:INTRON	ERO1A	ENSG00000197930.13	ENST00000395686.8:ENST00000554019.5:ENST00000556039.5:ENST00000629528.2:ENST00000554251.5:ENST00000556223.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	63	2	4.68434	5.237005	5.78967	0.0200045	0.0146211	0.100864	0.0826064
chr2	217022532	217022632	1029200	0	+	0.19	[0,0.29]	chr2	111930	261	INTRON	INTRON	DIRC3-AS1	ENSG00000233143.3	ENST00000695932.1:ENST00000695934.1:ENST00000695937.1	lncRNA	lncRNA	lncRNA	lncRNA	0	60	2	4.77872	5.236974999999999	5.69523	0.0145383	0.010611	0.0836469	0.0697759
chr3	12967186	12967286	1688801	0	-	0.67	(0.58,1]	chr3	176521	4	SS5_PROX	SS5_PROX:INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	160	2	3.48788	5.236945	6.98601	0.00208277	6.79156e-4	0.0237357	0.0153241
chr20	8492238	8492338	7430190	0	+	0.32	(0.29,0.33]	chr20	773698	1202	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	57	2	5.1769	5.23658	5.29626	0.035586	0.005619	0.127529	0.0462026
chr7	27114640	27114739	3559808	0	-	0.565657	(0.523,0.58]	chr7	343721	9	INTRON	INTRON	HOXA3	ENSG00000105997.23	ENST00000396352.8:ENST00000612286.5:ENST00000317201.7:ENST00000522788.5:ENST00000521401.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	125	2	4.32303	5.23627	6.14951	0.00793972	9.56741e-4	0.0596361	0.013724
chr3	13205924	13206024	1691201	0	-	0.48	(0.45,0.485]	chr3	176566	414	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.12938	5.236195	5.34301	0.0328801	0.00873194	0.122593	0.0612699
chr13	113021343	113021443	5655838	0	+	0.56	(0.523,0.58]	chr13	555145	61	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	57	2	5.06957	5.2359100000000005	5.40225	0.0448011	0.00404292	0.140478	0.0371291
chr15	20442638	20442738	6202473	0	-	0.56	(0.523,0.58]	chr15	610287	16	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000424611.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	57	2	5.06957	5.2359100000000005	5.40225	0.0448011	0.00404292	0.140478	0.0371291
chr10	79115617	79115717	4532511	0	+	0.52	(0.485,0.523]	chr10	432420	460	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	5.17012	5.235855	5.30159	0.038581	0.00529578	0.131324	0.044517
chr10	103697715	103697815	4757077	0	-	0.51	(0.485,0.523]	chr10	454791	42	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.17012	5.235855	5.30159	0.038581	0.00529578	0.131324	0.044517
chr18	74601330	74601430	7089284	0	+	0.49	(0.485,0.523]	chr18	722412	30	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000582337.5	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	5.17012	5.235855	5.30159	0.038581	0.00529578	0.131324	0.044517
chr22	20136810	20136909	7686999	0	+	0.494949	(0.485,0.523]	chr22	804236	44	INTRON	INTRON	ZDHHC8	ENSG00000099904.16	ENST00000436518.5:ENST00000334554.12:ENST00000405930.3:ENST00000320602.11:ENST00000468112.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.17012	5.235855	5.30159	0.038581	0.00529578	0.131324	0.044517
chr9	83532588	83532688	4325877	0	-	0.5	(0.485,0.523]	chr9	413150	650	INTRON	INTRON	FRMD3	ENSG00000172159.16	ENST00000376438.5:ENST00000304195.8	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	5.17012	5.235855	5.30159	0.038581	0.00529578	0.131324	0.044517
chr20	44402744	44402817	7482941	0	+	0.60274	(0.58,1]	chr20	779640	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000682427.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	55	2	5.0607	5.23582	5.41094	0.029633	0.00240622	0.116079	0.0261006
chr1	2243019	2243119	4641	0	+	0.59	(0.58,1]	chr1	1048	100	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	5.21377	5.23554	5.25731	0.0230012	0.00358178	0.102982	0.0342681
chr17	80274795	80274894	6807312	0	+	0.646465	(0.58,1]	chr17	687364	10	INTRON	INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000319921.4	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.21377	5.23554	5.25731	0.0230012	0.00358178	0.102982	0.0342681
chr6	34588280	34588379	3124188	0	-	0.616162	(0.58,1]	chr6	304700	11	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.21377	5.23554	5.25731	0.0230012	0.00358178	0.102982	0.0342681
chr8	141413952	141414052	3925976	0	+	0.66	(0.58,1]	chr8	374791	4	SS5_PROX	SS5_PROX:INTRON	PTP4A3	ENSG00000184489.13	ENST00000520105.5:ENST00000521578.6:ENST00000523147.5:ENST00000329397.6	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.21377	5.23554	5.25731	0.0230012	0.00358178	0.102982	0.0342681
chr19	944114	944214	7185287	0	+	0.64	(0.58,1]	chr19	730741	110	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	141	2	4.15237	5.235285	6.3182	0.00456039	1.74994e-4	0.0438198	0.00410754
chr3	82382003	82382103	1510205	0	+	0.33	(0.29,0.33]	chr3	161021	2	INTRON	INTRON	LINC02008	ENSG00000239440.6	ENST00000470263.5:ENST00000666519.1:ENST00000668833.1:ENST00000653255.1:ENST00000666096.1	lncRNA	lncRNA	lncRNA	lncRNA	0	57	2	5.07676	5.23505	5.39334	0.0412683	0.00448059	0.136301	0.0398484
chr13	97232931	97233031	5630910	0	+	0.34	(0.33,0.36]	chr13	553173	100	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	58	2	5.00642	5.234985	5.46355	0.0542065	0.00462971	0.151733	0.0408278
chr9	2102116	2102215	4106175	0	+	0.343434	(0.33,0.36]	chr9	391102	1	INTRON	INTRON	SMARCA2	ENSG00000080503.24	ENST00000357248.8:ENST00000450198.6:ENST00000349721.8:ENST00000382194.6:ENST00000634760.1:ENST00000382203.5:ENST00000635739.1:ENST00000634925.1:ENST00000636157.1:ENST00000634271.1:ENST00000638139.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	58	2	5.00642	5.234985	5.46355	0.0542065	0.00462971	0.151733	0.0408278
chr10	18553870	18553969	4642267	0	-	0.434343	(0.419,0.45]	chr10	443321	15	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	4.56048	5.2347850000000005	5.90909	0.0337332	0.0184411	0.133139	0.0927235
chr18	10900188	10900288	7117433	0	-	0.34	(0.33,0.36]	chr18	724469	96	INTRON	INTRON	PIEZO2	ENSG00000154864.14	ENST00000302079.10:ENST00000674853.1:ENST00000383408.7:ENST00000503781.7:ENST00000580640.5:ENST00000582913.5:ENST00000686869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	58	2	5.17152	5.2345299999999995	5.29754	0.0360263	0.00887848	0.127853	0.0618231
chr4	153487485	153487585	2151093	0	+	0.49	(0.485,0.523]	chr4	217962	132	INTRON	INTRON	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000445960.5:ENST00000409959.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	5.06999	5.2343399999999995	5.39869	0.0445854	0.00421243	0.140478	0.0380601
chr16	85589030	85589130	6518963	0	+	0.69	(0.58,1]	chr16	646396	323	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	1	118	2	3.9863	5.234325	6.48235	0.00202884	0.0017591	0.0283135	0.0211077
chr1	85464342	85464442	520005	0	-	0.72	(0.58,1]	chr1	61356	2	SS5_PROX	SS5_PROX:INTRON	DDAH1	ENSG00000153904.21	ENST00000426972.8:ENST00000284031.13	protein_coding	protein_coding	protein_coding	protein_coding	4	268	2	3.31041	5.234275	7.15814	0.00522823	1.10629e-5	0.0476414	5.52474e-4
chr11	14735981	14736081	4805942	0	+	0.4	(0.39,0.419]	chr11	460698	352	INTRON	INTRON	PDE3B	ENSG00000152270.9	ENST00000282096.9:ENST00000455098.2:ENST00000534317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	134	2	4.44232	5.234249999999999	6.02618	0.0136549	9.49224e-4	0.0798074	0.0136465
chr19	47672455	47672555	7278341	0	+	0.52	(0.485,0.523]	chr19	747629	645	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	0	57	2	5.21769	5.234085	5.25048	0.0359739	0.0059614	0.127853	0.0479866
chr3	3739642	3739742	1670537	0	-	0.49	(0.485,0.523]	chr3	175252	368	INTRON	INTRON	SUMF1	ENSG00000144455.14	ENST00000470751.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	57	2	5.21769	5.234085	5.25048	0.0359739	0.0059614	0.127853	0.0479866
chr13	33643082	33643182	5689005	0	-	0.4	(0.39,0.419]	chr13	558276	77	INTRON	INTRON	ENSG00000230490	ENSG00000230490.4	ENST00000686875.1:ENST00000454681.2:ENST00000655117.2:ENST00000690486.1:ENST00000654283.1:ENST00000653421.1	lncRNA	lncRNA	lncRNA	lncRNA	2	189	2	4.26846	5.233975	6.19949	0.0103045	4.42806e-4	0.0684871	0.00803713
chr2	101728931	101729031	860945	0	+	0.31	(0.29,0.33]	chr2	97528	300	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	2	171	2	4.04313	5.23389	6.42465	0.00427399	6.3144e-4	0.042386	0.0102754
chr9	129501016	129501114	4250787	0	+	0.520408	(0.485,0.523]	chr9	404726	22	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	127	2	4.47284	5.23379	5.99474	0.0103305	6.43746e-4	0.0684871	0.0104271
chr9	93661925	93662021	4184517	0	+	0.395833	(0.39,0.419]	chr9	397767	10	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.63037	5.233639999999999	5.83691	0.0963077	0.00215135	0.189169	0.0241566
chr10	18573956	18574055	4642468	0	-	0.474747	(0.45,0.485]	chr10	443321	216	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.81772	5.23347	5.64922	0.020599	0.0167663	0.0982852	0.0917029
chr1	228145174	228145267	358037	0	+	0.591398	(0.58,1]	chr1	40405	4	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5:ENST00000366718.5:ENST00000470040.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	4.66416	5.233029999999999	5.8019	0.0144381	0.007984	0.0833845	0.0596361
chr2	10303377	10303477	718428	0	+	0.58	(0.523,0.58]	chr2	84013	2	SS5_PROX	SS5_PROX:INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8	protein_coding	protein_coding	protein_coding	protein_coding	1	134	2	3.65844	5.233	6.80756	0.00554418	0.00236582	0.0456911	0.0306624
chr6	158562330	158562430	3063918	0	+	0.43	(0.419,0.45]	chr6	297687	17	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	1	136	2	3.85261	5.233	6.61339	0.0059347	0.00448861	0.0506158	0.0399092
chr1	148574377	148574464	582454	0	-	0.448276	(0.419,0.45]	chr1	67136	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF14	ENSG00000270629.7	ENST00000619423.4:ENST00000614999.4:ENST00000621066.4:ENST00000611826.4:ENST00000616120.4:ENST00000621070.4	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.81671	5.232875	5.64904	0.08258	0.00368884	0.179396	0.0348088
chr7	127975173	127975273	3471479	0	+	0.44	(0.419,0.45]	chr7	335423	256	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	4.81671	5.232875	5.64904	0.08258	0.00368884	0.179396	0.0348088
chr16	89417783	89417883	6661009	0	-	0.53	(0.523,0.58]	chr16	666741	1	SS5_PROX	SS5_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	58	2	4.84569	5.232725	5.61976	0.0610722	0.00236826	0.158506	0.0259199
chr9	137570624	137570724	4435770	0	-	0.55	(0.523,0.58]	chr9	424466	51	INTRON	INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000475100.5:ENST00000472113.5:ENST00000485189.5:ENST00000467768.5:ENST00000477690.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	4.84569	5.232725	5.61976	0.0610722	0.00236826	0.158506	0.0259199
chr19	11578143	11578242	7208007	0	+	0.555556	(0.523,0.58]	chr19	735780	24	INTRON	INTRON	ZNF627	ENSG00000198551.10	ENST00000593279.5:ENST00000585493.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.01677	5.23261	5.44845	0.0482765	0.00361636	0.144601	0.0342681
chr6	106297693	106297793	3220281	0	-	0.36	(0.33,0.36]	chr6	312381	42	INTRON	INTRON	ATG5	ENSG00000057663.16	ENST00000636437.1:ENST00000636335.1:ENST00000369070.5:ENST00000369076.8:ENST00000635758.2:ENST00000360666.6:ENST00000343245.7:ENST00000646025.1:ENST00000613993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	59	2	4.83538	5.232609999999999	5.62984	0.0679743	0.00313405	0.164413	0.0312116
chr10	45858091	45858191	4678150	0	-	0.53	(0.523,0.58]	chr10	446183	28	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000610690.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	0	57	2	5.20104	5.23218	5.26332	0.0337698	0.00648051	0.124319	0.0503748
chr11	70816165	70816265	5062445	0	-	0.54	(0.523,0.58]	chr11	492713	86	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.20104	5.23218	5.26332	0.0337698	0.00648051	0.124319	0.0503748
chr17	14013781	14013881	6858778	0	-	0.55	(0.523,0.58]	chr17	694957	1147	INTRON	INTRON	COX10-DT	ENSG00000236088.11	ENST00000582752.7:ENST00000690301.1:ENST00000662986.1:ENST00000686809.1:ENST00000686296.1:ENST00000602539.2:ENST00000602743.1	lncRNA	lncRNA	lncRNA	lncRNA	0	57	2	5.20104	5.23218	5.26332	0.0337698	0.00648051	0.124319	0.0503748
chr6	11043527	11043627	3093178	0	-	0.58	(0.523,0.58]	chr6	300390	324	INTRON	INTRON	ELOVL2	ENSG00000197977.4	ENST00000354666.4	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	5.20104	5.23218	5.26332	0.0337698	0.00648051	0.124319	0.0503748
chr19	38649359	38649459	7257857	0	+	0.49	(0.485,0.523]	chr19	743980	7	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	125	2	4.13042	5.2321550000000006	6.33389	0.00567224	0.00166514	0.0496143	0.0203119
chr7	133542111	133542211	3488058	0	+	0.39	(0.36,0.39]	chr7	336682	581	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000486013.5:ENST00000253861.5:ENST00000486409.6:ENST00000479839.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	58	2	5.14958	5.2319949999999995	5.31441	0.0493212	0.00715023	0.146207	0.0541241
chr13	113049623	113049723	5656131	0	+	0.66	(0.58,1]	chr13	555180	24	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	5.20223	5.231805	5.26138	0.021217	0.00411607	0.0996078	0.0374453
chr21	43957836	43957936	7625362	0	+	0.62	(0.58,1]	chr21	796924	22	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000448845.1:ENST00000422850.5:ENST00000546158.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.20223	5.231805	5.26138	0.021217	0.00411607	0.0996078	0.0374453
chr4	53143832	53143932	2235950	0	-	0.31	(0.29,0.33]	chr4	225488	2226	INTRON	INTRON	SCFD2	ENSG00000184178.17	ENST00000401642.8:ENST00000388940.8	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	5.02395	5.231745	5.43954	0.0445554	0.00401582	0.140478	0.0371286
chr22	50675843	50675936	7754922	0	+	0.526882	(0.523,0.58]	chr22	812695	2	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	58	2	5.02927	5.23169	5.43411	0.026041	0.0095202	0.109673	0.0650078
chr17	72539465	72539565	6963705	0	-	0.52	(0.485,0.523]	chr17	710389	50	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	140	2	4.91277	5.231655	5.55054	0.0215787	1.7739e-4	0.100612	0.00415451
chr2	44538854	44538954	782245	0	+	0.29	[0,0.29]	chr2	89659	817	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	5.16198	5.2314	5.30082	0.0212677	0.00622515	0.0996805	0.0496245
chr1	89908919	89909019	181580	0	+	0.36	(0.33,0.36]	chr1	19585	619	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	1	131	2	4.42536	5.23138	6.0374	0.0113089	9.06044e-4	0.0722887	0.0132726
chr11	46099322	46099422	5030614	0	-	0.38	(0.36,0.39]	chr11	486583	67	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000689695.1:ENST00000685188.1:ENST00000532883.5:ENST00000524497.5:ENST00000693122.1:ENST00000529734.5:ENST00000529782.5:ENST00000688222.1:ENST00000690039.1:ENST00000533757.5:ENST00000525438.5:ENST00000692265.1:ENST00000527782.5:ENST00000532010.5:ENST00000528893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	58	2	5.1004	5.231255	5.36211	0.0526991	0.00643924	0.14912	0.0503748
chr2	31877016	31877116	1115606	0	-	0.44	(0.419,0.45]	chr2	122032	67	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000422936.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	4.9329	5.2312449999999995	5.52959	0.0716557	0.00484244	0.168159	0.0418176
chr16	85523179	85523279	6518303	0	+	0.58	(0.523,0.58]	chr16	646391	1639	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	356	2	5.00594	5.23122	5.4565	5.35035e-4	1.28987e-4	0.0134776	0.00330377
chrX	9568141	9568241	7843481	0	+	0.52	(0.485,0.523]	chrX	822423	72	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	152	2	3.58354	5.231215000000001	6.87889	0.0192242	7.40532e-5	0.0954446	0.00219184
chr1	113010255	113010354	210203	0	+	0.414141	(0.39,0.419]	chr1	23234	15	INTRON	INTRON	SLC16A1-AS1	ENSG00000226419.8	ENST00000627431.2:ENST00000413231.5	lncRNA	lncRNA	lncRNA	lncRNA	0	58	2	5.14823	5.23104	5.31385	0.0501234	0.0071966	0.147892	0.0543014
chr18	12852170	12852270	7124003	0	-	0.41	(0.39,0.419]	chr18	725017	83	INTRON	INTRON	PTPN2	ENSG00000175354.20	ENST00000327283.7:ENST00000591115.5:ENST00000353319.8:ENST00000309660.10:ENST00000646492.1:ENST00000645191.1:ENST00000645816.1:ENST00000591305.5:ENST00000592776.1:ENST00000589216.1:ENST00000592059.5:ENST00000589086.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	58	2	5.14823	5.23104	5.31385	0.0501234	0.0071966	0.147892	0.0543014
chr4	152419417	152419517	2354484	0	-	0.4	(0.39,0.419]	chr4	235290	65	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.14823	5.23104	5.31385	0.0501234	0.0071966	0.147892	0.0543014
chrX	24215757	24215856	7854991	0	+	0.414141	(0.39,0.419]	chrX	823881	45	UTR3	UTR3:EXON_MRNA	ZFX	ENSG00000005889.16	ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000379177.5	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.14823	5.23104	5.31385	0.0501234	0.0071966	0.147892	0.0543014
chr8	9027110	9027209	3749001	0	+	0.424242	(0.419,0.45]	chr8	360458	63	INTRON	INTRON	ERI1	ENSG00000104626.15	ENST00000519292.5:ENST00000250263.8:ENST00000520332.5:ENST00000518663.1:ENST00000522612.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	5.09718	5.230565	5.36395	0.0407485	0.012235	0.135868	0.0757339
chr6	30891579	30891659	2892434	0	+	0.5625	(0.523,0.58]	chr6	282170	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DDR1	ENSG00000204580.14	ENST00000460944.6:ENST00000324771.12:ENST00000418800.6:ENST00000454612.6:ENST00000376569.7:ENST00000376570.8:ENST00000428153.6:ENST00000376568.8:ENST00000452441.5:ENST00000515219.5:ENST00000482873.6:ENST00000508312.5:ENST00000376567.6:ENST00000446312.5:ENST00000513240.5:ENST00000376575.7:ENST00000508472.5:ENST00000507533.1:ENST00000485023.1:ENST00000417521.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	74	2	4.23973	5.230499999999999	6.22127	0.0444247	0.00699217	0.153511	0.0555241
chr12	132530777	132530877	5352923	0	+	0.65	(0.58,1]	chr12	523670	24	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	139	2	4.06678	5.230335	6.39389	0.00544536	1.38027e-4	0.0486855	0.00347229
chr21	41828733	41828833	7673609	0	-	0.67	(0.58,1]	chr21	801977	4	SS3_PROX	SS3_PROX:INTRON	PRDM15	ENSG00000141956.14	ENST00000422911.6:ENST00000441787.5:ENST00000449395.6:ENST00000398548.6:ENST00000447016.6:ENST00000269844.5:ENST00000491486.5:ENST00000489661.5:ENST00000496124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	56	2	5.02314	5.23033	5.43752	0.0156166	0.00638322	0.0849828	0.0501889
chr4	3365291	3365390	2005089	0	+	0.636364	(0.58,1]	chr4	204663	219	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	56	2	5.02314	5.23033	5.43752	0.0156166	0.00638322	0.0849828	0.0501889
chr6	34910183	34910282	2900721	0	+	0.393939	(0.39,0.419]	chr6	284492	202	INTRON	INTRON	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1:ENST00000650178.1	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.09906	5.2303049999999995	5.36155	0.0535378	0.00648185	0.150319	0.0503748
chr15	101354045	101354144	6363079	0	-	0.555556	(0.523,0.58]	chr15	627201	59	INTRON	INTRON	PCSK6	ENSG00000140479.18	ENST00000677364.1:ENST00000676598.1:ENST00000558951.5:ENST00000398185.6:ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000679007.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000559605.1:ENST00000560902.5:ENST00000611967.4:ENST00000615296.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	127	2	4.52171	5.230175	5.93864	0.0114442	5.43906e-4	0.0723462	0.00927567
chr12	132949766	132949865	5542029	0	-	0.575758	(0.523,0.58]	chr12	547064	11	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	60	2	4.65157	5.23015	5.80873	0.0787008	0.00145893	0.175203	0.0184991
chr6	4920912	4921012	2832024	0	+	0.4	(0.39,0.419]	chr6	277809	282	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000440139.5:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	5.19579	5.23015	5.26451	0.0469937	0.00800901	0.143232	0.0580954
chr17	29131535	29131635	6876478	0	-	0.52	(0.485,0.523]	chr17	697999	1	SS3_PROX	SS3_PROX:INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000590242.5:ENST00000528564.2:ENST00000528322.6:ENST00000585573.6:ENST00000533420.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	58	2	5.02573	5.23013	5.43453	0.0258944	0.00985879	0.109555	0.0664239
chr19	40046575	40046675	7378907	0	-	0.49	(0.485,0.523]	chr19	765518	96	INTRON	INTRON	ZNF780B	ENSG00000128000.17	ENST00000434248.6:ENST00000221355.10:ENST00000598845.5	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.02573	5.23013	5.43453	0.0258944	0.00985879	0.109555	0.0664239
chr6	158019790	158019889	3059690	0	+	0.414141	(0.39,0.419]	chr6	297373	16	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	1	134	2	4.46007	5.22985	5.99963	0.0142473	9.05282e-4	0.0817691	0.0132726
chr2	152443174	152443274	926543	0	+	0.49	(0.485,0.523]	chr2	103058	1071	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	1	132	2	4.7014	5.22962	5.75784	0.0154142	3.32408e-4	0.0849828	0.00652409
chr2	44538954	44539054	782246	0	+	0.48	(0.45,0.485]	chr2	89659	818	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	58	2	4.89685	5.22944	5.56203	0.0614781	0.00322991	0.158506	0.0319521
chr7	107514337	107514437	3676171	0	-	0.32	(0.29,0.33]	chr7	354238	335	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	125	2	4.20689	5.22931	6.25173	0.00588805	0.00140294	0.0506158	0.0180301
chr1	61441374	61441471	149714	0	+	0.412371	(0.39,0.419]	chr1	17241	15	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000407417.7:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1:ENST00000657234.1:ENST00000655770.1:ENST00000357977.5:ENST00000493627.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	4.76257	5.228875	5.69518	0.0822354	0.00302238	0.179396	0.0305643
chr3	11650701	11650801	1684853	0	-	0.35	(0.33,0.36]	chr3	176111	69	INTRON	INTRON	VGLL4	ENSG00000144560.16	ENST00000273038.7:ENST00000426568.5:ENST00000445411.5:ENST00000418000.5:ENST00000417206.6:ENST00000417466.5:ENST00000419541.4:ENST00000623028.1	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.11654	5.22868	5.34082	0.0338211	0.00998589	0.124319	0.0667545
chr21	32336304	32336400	7650521	0	-	0.520833	(0.485,0.523]	chr21	800168	8	INTRON	INTRON	URB1	ENSG00000142207.7	ENST00000382751.4	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.65198	5.228565	5.80515	0.0783889	0.00153111	0.175203	0.0191213
chr22	46906694	46906794	7746458	0	+	0.54	(0.523,0.58]	chr22	812218	115	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	4.83424	5.22841	5.62258	0.0193313	0.0144272	0.0954446	0.0833845
chr3	136705308	136705408	1924884	0	-	0.31	(0.29,0.33]	chr3	195641	740	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2:ENST00000487065.5:ENST00000480733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	61	2	4.58769	5.2283100000000005	5.86893	0.0806047	0.00137721	0.177452	0.0178071
chr11	64146156	64146256	5049039	0	-	0.58	(0.523,0.58]	chr11	490257	194	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	169	2	4.05953	5.22817	6.39681	0.00509616	5.60158e-4	0.0467496	0.00945776
chr14	75644927	75645024	5887209	0	+	0.412371	(0.39,0.419]	chr14	574978	27	INTRON	INTRON	FLVCR2:TTLL5	ENSG00000119686.10:ENSG00000119685.20	ENST00000238667.9:ENST00000554496.1:ENST00000555385.1:ENST00000539311.5:ENST00000556241.5:ENST00000553587.5:ENST00000556856.1:ENST00000555027.1:ENST00000554132.1:ENST00000556265.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	5.04815	5.2279350000000004	5.40772	0.0572698	0.00585126	0.154343	0.0474117
chr7	2378015	2378111	3308503	0	+	0.5625	(0.523,0.58]	chr7	320690	3	EXON_MRNA	EXON_MRNA:INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000475415.5:ENST00000468611.5:ENST00000465670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	59	2	4.71922	5.227655	5.73609	0.0721601	0.0017613	0.168159	0.0211077
chr8	127850337	127850437	3918346	0	+	0.49	(0.485,0.523]	chr8	374180	37	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000655594.1	lncRNA	lncRNA	lncRNA	lncRNA	0	61	2	4.581	5.227655	5.87431	0.085711	0.00127835	0.181766	0.0168904
chr1	179030876	179030975	292521	0	+	0.393939	(0.39,0.419]	chr1	33191	44	INTRON	INTRON	FAM20B	ENSG00000116199.12	ENST00000440702.5:ENST00000263733.5	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.92679	5.22765	5.52851	0.029339	0.0160946	0.116079	0.0896852
chr4	101033259	101033358	2289997	0	-	0.40404	(0.39,0.419]	chr4	230481	5	INTRON	INTRON	PPP3CA	ENSG00000138814.17	ENST00000512215.5:ENST00000394854.8:ENST00000323055.10:ENST00000394853.8:ENST00000507176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.92679	5.22765	5.52851	0.029339	0.0160946	0.116079	0.0896852
chr13	32171969	32172068	5562368	0	+	0.40404	(0.39,0.419]	chr13	548646	3	INTRON	INTRON	FRY	ENSG00000073910.23	ENST00000645780.1:ENST00000647500.1:ENST00000642040.1:ENST00000542859.6	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.21344	5.2276299999999996	5.24182	0.0441194	0.00893514	0.140174	0.0620271
chr21	43727544	43727643	7623869	0	+	0.545455	(0.523,0.58]	chr21	796696	38	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000438837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	124	2	4.16563	5.2276299999999996	6.28963	0.00618741	0.00147865	0.0519442	0.0186157
chr14	35180469	35180569	5779218	0	+	0.36	(0.33,0.36]	chr14	566621	4	SS3_PROX	SS3_PROX:INTRON	PRORP:ENSG00000258790	ENSG00000100890.16:ENSG00000258790.1	ENST00000604948.5:ENST00000557565.1:ENST00000534898.9:ENST00000321130.14:ENST00000250377.11:ENST00000603544.5:ENST00000605870.5:ENST00000557404.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	61	2	4.64131	5.22761	5.81391	0.0867669	0.00200357	0.182221	0.0230381
chr16	57373138	57373236	6465995	0	+	0.571429	(0.523,0.58]	chr16	641365	1	INTRON	INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.96197	5.227595	5.49322	0.0521137	0.00324246	0.148503	0.0319521
chr7	75935905	75936004	3396814	0	+	0.464646	(0.45,0.485]	chr7	328054	126	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000449920.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	59	2	4.95056	5.22739	5.50422	0.0257993	0.0127826	0.109555	0.0773423
chr10	103625016	103625115	4756339	0	-	0.565657	(0.523,0.58]	chr10	454749	21	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000420222.2:ENST00000691105.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.14602	5.226985	5.30795	0.0315825	0.00734367	0.120781	0.0550721
chr11	7577096	7577195	4792571	0	+	0.525253	(0.523,0.58]	chr11	459336	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PPFIBP2	ENSG00000166387.14	ENST00000684123.1:ENST00000299492.9:ENST00000527790.5:ENST00000524548.5:ENST00000529575.5:ENST00000533792.5:ENST00000532926.5:ENST00000684215.1:ENST00000650027.1:ENST00000525597.5:ENST00000529021.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.14602	5.226985	5.30795	0.0315825	0.00734367	0.120781	0.0550721
chr2	235512733	235512833	1062723	0	+	0.62	(0.58,1]	chr2	115651	175	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	140	2	4.13566	5.226929999999999	6.3182	0.00472191	1.74994e-4	0.0449204	0.00410754
chr10	132711654	132711754	4618584	0	+	0.64	(0.58,1]	chr10	441181	8	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000487614.1:ENST00000498337.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	4.94882	5.226895000000001	5.50497	0.0354433	0.00187297	0.127188	0.0219434
chr13	33643681	33643781	5689011	0	-	0.6	(0.58,1]	chr13	558276	83	INTRON	INTRON	ENSG00000230490	ENSG00000230490.4	ENST00000686875.1:ENST00000454681.2:ENST00000655117.2:ENST00000690486.1:ENST00000654283.1:ENST00000653421.1	lncRNA	lncRNA	lncRNA	lncRNA	0	55	2	4.94882	5.226895000000001	5.50497	0.0354433	0.00187297	0.127188	0.0219434
chr2	218463205	218463305	1370759	0	-	0.31	(0.29,0.33]	chr2	146085	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	USP37	ENSG00000135913.11	ENST00000258399.8:ENST00000454775.5:ENST00000415516.5:ENST00000418019.5	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.75412	5.2264800000000005	5.69884	0.0180435	0.0155382	0.0952934	0.0849828
chr5	109811574	109811674	2504606	0	+	0.44	(0.419,0.45]	chr5	248901	69	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5:ENST00000502261.5:ENST00000508043.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	137	2	3.77132	5.22637	6.68142	0.00544312	0.00529005	0.047841	0.0454065
chr14	54678321	54678421	5820558	0	+	0.41	(0.39,0.419]	chr14	569059	91	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1:ENST00000555091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	137	2	3.71423	5.22626	6.73829	0.00594315	0.00411485	0.0479866	0.0414433
chr17	80274597	80274696	6807310	0	+	0.676768	(0.58,1]	chr17	687364	8	INTRON	INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000319921.4	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.14497	5.22622	5.30747	0.0196049	0.00474658	0.0955413	0.0413976
chr4	10101220	10101319	2195662	0	-	0.585859	(0.58,1]	chr4	222412	17	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	5.14497	5.22622	5.30747	0.0196049	0.00474658	0.0955413	0.0413976
chr18	74960281	74960381	7092886	0	+	0.57	(0.523,0.58]	chr18	722473	392	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	4.90222	5.22617	5.55012	0.0217068	0.0125132	0.100615	0.0765738
chr3	9768949	9769044	1682428	0	-	0.547368	(0.523,0.58]	chr3	175743	8	INTRON	INTRON	CAMK1	ENSG00000134072.11	ENST00000256460.8:ENST00000397277.6:ENST00000411972.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	59	2	4.90222	5.22617	5.55012	0.0217068	0.0125132	0.100615	0.0765738
chr4	8203198	8203297	2014039	0	+	0.575758	(0.523,0.58]	chr4	205498	11	INTRON	INTRON	SH3TC1	ENSG00000125089.18	ENST00000510763.5:ENST00000508641.2:ENST00000245105.8:ENST00000507123.1:ENST00000506360.5:ENST00000502669.5:ENST00000382521.7:ENST00000515682.5:ENST00000457650.7:ENST00000504822.1:ENST00000503284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	59	2	4.90222	5.22617	5.55012	0.0217068	0.0125132	0.100615	0.0765738
chr14	66845810	66845910	5853456	0	+	0.51	(0.485,0.523]	chr14	572426	27	INTRON	INTRON	GPHN	ENSG00000171723.16	ENST00000315266.9:ENST00000459628.5:ENST00000478722.6:ENST00000543237.5:ENST00000556633.5:ENST00000555668.5:ENST00000553936.5:ENST00000557654.5:ENST00000544752.6:ENST00000555456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	59	2	4.71964	5.226075	5.73251	0.0718646	0.00184599	0.168159	0.0217471
chr6	42640470	42640570	2914529	0	+	0.52	(0.485,0.523]	chr6	286101	2	SS5_PROX	SS5_PROX:INTRON	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.96239	5.226025	5.48966	0.0518747	0.0033837199999999998	0.148503	0.0328791
chr6	34587287	34587386	3124178	0	-	0.343434	(0.33,0.36]	chr6	304700	1	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.57035	5.22589	5.88143	0.0945416	0.00169367	0.188571	0.0204799
chr19	45622037	45622137	7388915	0	-	0.51	(0.485,0.523]	chr19	767273	4	SS3_PROX	SS3_PROX:INTRON	EML2	ENSG00000125746.18	ENST00000589876.5:ENST00000587152.6:ENST00000245925.8:ENST00000586195.5:ENST00000588308.5:ENST00000536630.5:ENST00000590819.5:ENST00000399594.7:ENST00000590575.5:ENST00000588272.1:ENST00000588000.5:ENST00000588610.5:ENST00000588496.5:ENST00000586902.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	57	2	5.14248	5.2254249999999995	5.30837	0.0314138	0.00761903	0.12069	0.0561937
chr2	239296166	239296266	1391670	0	-	0.5	(0.485,0.523]	chr2	148740	446	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	57	2	5.14248	5.2254249999999995	5.30837	0.0314138	0.00761903	0.12069	0.0561937
chr7	1071482	1071581	3526942	0	-	0.494949	(0.485,0.523]	chr7	340585	163	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.14248	5.2254249999999995	5.30837	0.0314138	0.00761903	0.12069	0.0561937
chr15	48160403	48160503	6251438	0	-	0.28	[0,0.29]	chr15	615735	2	INTRON	INTRON	MYEF2	ENSG00000104177.19	ENST00000324324.12:ENST00000267836.10:ENST00000616409.4:ENST00000561351.5:ENST00000559862.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	148	2	4.30887	5.22528	6.14169	0.00350664	4.88624e-4	0.0379357	0.00860857
chr13	113314131	113314229	5658077	0	+	0.663265	(0.58,1]	chr13	555649	29	INTRON	INTRON	LAMP1	ENSG00000185896.11	ENST00000332556.5:ENST00000472564.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	57	2	4.6951	5.22508	5.75506	0.0521567	9.38062e-4	0.148503	0.0135546
chr5	173893050	173893116	2592543	0	+	0.484848	(0.45,0.485]	chr5	257271	1	UTR5	UTR5:EXON_MRNA:INTRON	CPEB4	ENSG00000113742.14	ENST00000265085.10:ENST00000334035.9:ENST00000520867.5:ENST00000519835.5:ENST00000522344.1:ENST00000519152.5:ENST00000522336.5:ENST00000517880.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	57	2	5.1123	5.225055	5.33781	0.0458344	0.0054758	0.142336	0.0454065
chr7	67189301	67189401	3385927	0	+	0.47	(0.45,0.485]	chr7	326607	57	INTRON	INTRON	TYW1	ENSG00000198874.14	ENST00000359626.10:ENST00000361660.8:ENST00000495971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	57	2	5.1123	5.225055	5.33781	0.0458344	0.0054758	0.142336	0.0454065
chr3	49780776	49780875	1773987	0	-	0.484848	(0.45,0.485]	chr3	183906	320	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.16149	5.224975	5.28846	0.0427653	0.00612862	0.13762	0.0489549
chr3	100135344	100135444	1520309	0	+	0.47	(0.45,0.485]	chr3	161681	200	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000489081.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	5.16149	5.224975	5.28846	0.0427653	0.00612862	0.13762	0.0489549
chr3	188760482	188760582	1657886	0	+	0.47	(0.45,0.485]	chr3	173845	2	SS5_PROX	SS5_PROX:INTRON	LPP	ENSG00000145012.14	ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000459897.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.16149	5.224975	5.28846	0.0427653	0.00612862	0.13762	0.0489549
chr17	17722227	17722327	6689257	0	+	0.6	(0.58,1]	chr17	671338	373	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	1	115	2	4.18386	5.22492	6.26598	0.00318361	9.90719e-4	0.0360488	0.0141138
chr21	43605168	43605267	7677122	0	-	0.575758	(0.523,0.58]	chr21	802562	125	INTRON	INTRON	HSF2BP	ENSG00000160207.9	ENST00000291560.7	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.50593	5.2249099999999995	5.94389	0.094303	0.0010207	0.188571	0.0143498
chr4	2813357	2813453	2000239	0	+	0.583333	(0.58,1]	chr4	203927	5	INTRON	INTRON	SH3BP2	ENSG00000087266.17	ENST00000503219.5:ENST00000512131.5:ENST00000503393.8:ENST00000510074.5:ENST00000511237.5:ENST00000504294.5:ENST00000508385.5:ENST00000513020.5:ENST00000511663.5:ENST00000512014.5:ENST00000513095.5:ENST00000502260.5:ENST00000435136.8:ENST00000511185.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	59	2	4.54927	5.2249099999999995	5.90055	0.0643046	6.1741e-4	0.161669	0.0101143
chr6	520279	520379	3077343	0	-	0.66	(0.58,1]	chr6	299297	202	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	4.54927	5.2249099999999995	5.90055	0.0643046	6.1741e-4	0.161669	0.0101143
chr10	18559266	18559366	4642321	0	-	0.36	(0.33,0.36]	chr10	443321	69	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	4.57958	5.2249	5.87022	0.0288057	0.0148989	0.123764	0.0834354
chr4	78990048	78990148	2073359	0	+	0.59	(0.58,1]	chr4	211774	166	INTRON	INTRON	LINC01088	ENSG00000249307.8	ENST00000669293.1:ENST00000671503.1:ENST00000509088.6:ENST00000670100.1:ENST00000658852.1:ENST00000651041.1:ENST00000510667.5	lncRNA	lncRNA	lncRNA	lncRNA	0	58	2	4.81862	5.2249	5.63118	0.0109983	0.0102696	0.0708586	0.0678072
chr17	41987368	41987465	6902068	0	-	0.371134	(0.36,0.39]	chr17	701836	9	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DNAJC7	ENSG00000168259.17	ENST00000316603.12:ENST00000457167.9:ENST00000586335.2:ENST00000674306.1:ENST00000426588.7:ENST00000674355.1:ENST00000674504.1:ENST00000674472.1:ENST00000674233.1:ENST00000674166.1:ENST00000674179.1:ENST00000674481.1:ENST00000674249.1:ENST00000585866.6:ENST00000589576.6:ENST00000674214.1:ENST00000588814.5:ENST00000590774.6:ENST00000674303.1:ENST00000674453.1:ENST00000674252.1:ENST00000674287.1:ENST00000674497.1:ENST00000674411.1:ENST00000585693.2:ENST00000674337.1:ENST00000590847.2:ENST00000674485.1:ENST00000674175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	58	2	4.99672	5.224875	5.45303	0.0604395	0.00525731	0.158506	0.044445
chr3	48428460	48428557	1766719	0	-	0.618557	(0.58,1]	chr3	182283	28	INTRON	INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	289	2	5.1119	5.22475	5.3376	5.51806e-4	2.41008e-5	0.0136798	9.61888e-4
chr11	68398010	68398109	4882942	0	+	0.40404	(0.39,0.419]	chr11	470578	76	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	134	2	3.82801	5.22464	6.62127	0.00504817	0.0045308	0.0465263	0.0400651
chr12	109556734	109556832	5494678	0	-	0.510204	(0.485,0.523]	chr12	540589	32	UTR3	UTR3:EXON_MRNA	MMAB	ENSG00000139428.12	ENST00000545712.7:ENST00000540016.5:ENST00000537496.5:ENST00000544051.5:ENST00000541763.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	59	2	4.8987	5.22462	5.55054	0.0215787	0.0129327	0.100612	0.0778105
chr19	4247756	4247842	7192643	0	+	0.488372	(0.485,0.523]	chr19	732524	2	INTRON	INTRON	YJU2	ENSG00000105248.16	ENST00000262962.12	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	4.8987	5.22462	5.55054	0.0215787	0.0129327	0.100612	0.0778105
chr18	6150371	6150471	7111219	0	-	0.39	(0.36,0.39]	chr18	723852	117	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000400105.6:ENST00000317931.12:ENST00000400104.7	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.16105	5.2244150000000005	5.28778	0.0407706	0.00993384	0.135868	0.0666221
chr3	132668037	132668134	1571855	0	+	0.381443	(0.36,0.39]	chr3	166594	9	EXON_MRNA	EXON_MRNA:INTRON	UBA5	ENSG00000081307.15	ENST00000264991.8:ENST00000493720.6:ENST00000683741.1:ENST00000468022.5:ENST00000356232.10:ENST00000473651.5:ENST00000494238.6:ENST00000505777.5:ENST00000464068.5:ENST00000489361.1:ENST00000468227.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	58	2	5.16105	5.2244150000000005	5.28778	0.0407706	0.00993384	0.135868	0.0666221
chr7	73597913	73598013	3602835	0	-	0.45	(0.419,0.45]	chr7	347627	2	SS3_PROX	SS3_PROX:INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	514	2	4.05469	5.224375	6.39406	0.00536552	3.69563e-6	0.048165	2.56579e-4
chr19	950299	950399	7185349	0	+	0.64	(0.58,1]	chr19	730741	172	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	617	2	5.06922	5.22427	5.37932	2.09991e-4	1.6501e-6	0.00817837	1.46087e-4
chr1	155661523	155661623	597780	0	-	0.38	(0.36,0.39]	chr1	70119	1	SS3_PROX	SS3_PROX:INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000442834.6:ENST00000355499.9:ENST00000405763.7:ENST00000488784.5:ENST00000493625.5:ENST00000477470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	64	2	4.64834	5.2242	5.80006	0.0272056	0.0191255	0.119337	0.0952349
chr3	149594737	149594837	1940568	0	-	0.34	(0.33,0.36]	chr3	197491	186	INTRON	INTRON	WWTR1	ENSG00000018408.15	ENST00000465804.5:ENST00000360632.8:ENST00000467467.5:ENST00000479238.1	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.73368	5.224035	5.71439	0.0216127	0.0191308	0.105648	0.0952349
chr18	21578060	21578160	7128469	0	-	0.4	(0.39,0.419]	chr18	725442	19	INTRON	INTRON	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	58	2	4.99538	5.22392	5.45246	0.0613573	0.00529344	0.158506	0.044517
chr7	2047612	2047712	3530708	0	-	0.46	(0.45,0.485]	chr7	340995	326	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	131	2	4.57535	5.22389	5.87243	0.0143887	5.36627e-4	0.0821732	0.0091711
chr19	37218429	37218515	7252056	0	+	0.44186	(0.419,0.45]	chr19	743295	1	SS5_PROX	SS5_PROX:INTRON	ZNF383	ENSG00000188283.12	ENST00000586068.5:ENST00000585441.5:ENST00000586658.1:ENST00000590503.5:ENST00000684119.1:ENST00000589413.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	136	2	4.48295	5.2238500000000005	5.96475	0.0169309	9.16167e-4	0.088829	0.0133855
chr10	68636903	68637003	4498261	0	+	0.39	(0.36,0.39]	chr10	430047	355	INTRON	INTRON	TET1	ENSG00000138336.9	ENST00000373644.5	protein_coding	protein_coding	protein_coding	protein_coding	0	80	2	4.09186	5.22371	6.35556	0.0687088	0.0077647	0.193274	0.0589564
chr11	126391874	126391974	4964263	0	+	0.46	(0.45,0.485]	chr11	479827	164	INTRON	INTRON	ST3GAL4	ENSG00000110080.20	ENST00000534733.6:ENST00000531217.5:ENST00000227495.10:ENST00000676867.1:ENST00000678865.1:ENST00000676545.1:ENST00000444328.7:ENST00000677503.1:ENST00000677721.1:ENST00000530591.5:ENST00000534083.5:ENST00000356132.9:ENST00000528605.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	57	2	5.06138	5.2234549999999995	5.38553	0.0492008	0.00490471	0.146142	0.0422077
chr21	45501627	45501727	7631321	0	+	0.7	(0.58,1]	chr21	797812	36	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.89007	5.22344	5.55681	0.0126042	0.00872525	0.0761905	0.0612699
chr9	133852594	133852694	4428924	0	-	0.66	(0.58,1]	chr9	423304	179	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.89007	5.22344	5.55681	0.0126042	0.00872525	0.0761905	0.0612699
chr6	41723548	41723637	3132629	0	-	0.629214	(0.58,1]	chr6	305484	2	UTR5	UTR5:EXON_MRNA:INTRON	TFEB	ENSG00000112561.19	ENST00000358871.6:ENST00000373033.6:ENST00000230323.8:ENST00000677531.1:ENST00000403298.9:ENST00000420312.6:ENST00000424495.2:ENST00000678831.1:ENST00000419396.6:ENST00000416140.6:ENST00000678871.1:ENST00000394283.5:ENST00000679237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	121	2	4.7449	5.223405	5.70191	0.00964351	1.74253e-4	0.0659937	0.00410754
chr16	21495393	21495493	6564590	0	-	0.37	(0.36,0.39]	chr16	654775	74	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522480.5:ENST00000522841.6:ENST00000437413.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	160	2	3.92376	5.223355	6.52295	0.0128339	3.65857e-4	0.0771174	0.00700609
chr11	71067858	71067958	5064972	0	-	0.46	(0.45,0.485]	chr11	492754	109	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000618363.4:ENST00000458632.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	57	2	5.20906	5.223205	5.23735	0.0399616	0.00687715	0.133954	0.0526888
chr14	104873455	104873555	5925946	0	+	0.67	(0.58,1]	chr14	579942	45	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	1	123	2	4.8147	5.2229399999999995	5.63118	0.0109983	1.38991e-4	0.0708586	0.00348143
chr21	44871959	44872057	7678562	0	-	0.520408	(0.485,0.523]	chr21	802773	60	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	1144	2	4.4941	5.222765000000001	5.95143	7.59056e-5	4.45161e-5	0.00368822	0.00223572
chr13	98259501	98259601	5634826	0	+	0.57	(0.523,0.58]	chr13	553480	143	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.68785	5.222635	5.75742	0.0194172	0.0155135	0.0994526	0.0849828
chr6	53744118	53744218	3151652	0	-	0.54	(0.523,0.58]	chr6	307434	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000227885	ENSG00000227885.3	ENST00000657329.1:ENST00000666996.1:ENST00000453790.1	lncRNA	lncRNA	lncRNA	lncRNA	0	62	2	4.68785	5.222635	5.75742	0.0194172	0.0155135	0.0994526	0.0849828
chr11	69083558	69083658	4885497	0	+	0.61	(0.58,1]	chr11	471022	4	PRIMIRNA	PRIMIRNA	MIR3164	ENSG00000265539.1	ENST00000581178.1	miRNA	primary_miRNA	miRNA	primary_miRNA	0	62	2	4.58025	5.222580000000001	5.86491	0.0172566	0.00707578	0.0923809	0.0558168
chr16	85514683	85514783	6518218	0	+	0.64	(0.58,1]	chr16	646391	1554	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.58025	5.222580000000001	5.86491	0.0172566	0.00707578	0.0923809	0.0558168
chr11	70741684	70741784	5061698	0	-	0.44	(0.419,0.45]	chr11	492701	238	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	138	2	3.71446	5.222435	6.73041	0.00621762	0.00486702	0.0496139	0.0456282
chr9	93662021	93662117	4184518	0	+	0.4375	(0.419,0.45]	chr9	397767	11	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	5.04004	5.222405	5.40477	0.0385125	0.0137308	0.131324	0.0814223
chr6	154794608	154794708	3044728	0	+	0.44	(0.419,0.45]	chr6	296651	2	SS3_PROX	SS3_PROX:INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000367178.8	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.09133	5.222250000000001	5.35317	0.0586308	0.00714797	0.155565	0.0541241
chr16	89307138	89307238	6659883	0	-	0.57	(0.523,0.58]	chr16	666665	14	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1:ENST00000647539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	58	2	4.78384	5.221715	5.65959	0.0663135	0.0021416	0.162385	0.0240825
chr17	80025700	80025800	6982173	0	-	0.58	(0.523,0.58]	chr17	713081	117	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.78384	5.221715	5.65959	0.0663135	0.0021416	0.162385	0.0240825
chr6	325959	326058	2824087	0	+	0.575758	(0.523,0.58]	chr6	277201	9	UTR5	UTR5:EXON_MRNA:INTRON	DUSP22	ENSG00000112679.15	ENST00000603296.5:ENST00000344450.9:ENST00000603453.5:ENST00000605315.5:ENST00000603881.5:ENST00000603795.5:ENST00000605035.5:ENST00000605863.5:ENST00000419235.7:ENST00000603005.5:ENST00000603726.5:ENST00000603290.1:ENST00000605391.5:ENST00000604971.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	58	2	4.78384	5.221715	5.65959	0.0663135	0.0021416	0.162385	0.0240825
chr20	44360740	44360840	7482515	0	+	0.51	(0.485,0.523]	chr20	779618	45	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5	protein_coding	protein_coding	protein_coding	protein_coding	1	125	2	4.39455	5.22145	6.04835	0.00941539	8.03516e-4	0.0653252	0.012189
chr17	82150360	82150460	6987877	0	-	0.63	(0.58,1]	chr17	714577	146	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000419322.6:ENST00000392346.6:ENST00000582040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	154	2	4.04274	5.221195	6.39965	0.00241374	3.85838e-4	0.0309229	0.00727473
chr16	20614309	20614409	6415599	0	+	0.55	(0.523,0.58]	chr16	634377	36	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	4.13061	5.221159999999999	6.31171	0.0533354	0.00594629	0.167062	0.0506158
chr11	100744488	100744587	4927212	0	+	0.353535	(0.33,0.36]	chr11	474912	56	INTRON	INTRON	ARHGAP42	ENSG00000165895.19	ENST00000298815.13:ENST00000524892.7:ENST00000534060.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	5.05937	5.221105	5.38284	0.0317908	0.0112642	0.121384	0.071709
chr17	77214605	77214702	6803120	0	+	0.597938	(0.58,1]	chr17	686684	7	UTR3	UTR3:EXON_MRNA:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	1	115	2	4.13012	5.221025	6.31193	0.00289626	0.00116063	0.03418	0.0157704
chr19	58207998	58208097	7300140	0	+	0.484848	(0.45,0.485]	chr19	751900	4	INTRON	INTRON	ZNF274	ENSG00000171606.18	ENST00000424679.6:ENST00000617501.5:ENST00000621145.4:ENST00000345813.7:ENST00000619307.4:ENST00000615675.4:ENST00000326804.8:ENST00000610905.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	139	2	4.82762	5.220965	5.61431	0.0217589	2.60077e-4	0.100615	0.00549835
chr5	108330602	108330702	2739293	0	-	0.32	(0.29,0.33]	chr5	268863	1060	INTRON	INTRON	FBXL17	ENSG00000145743.18	ENST00000542267.7:ENST00000496714.2:ENST00000481160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	58	2	4.79099	5.22082	5.65065	0.061706	0.00240038	0.158854	0.0261006
chr6	126154434	126154534	3004367	0	+	0.32	(0.29,0.33]	chr6	293834	382	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000648977.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	58	2	4.79099	5.22082	5.65065	0.061706	0.00240038	0.158854	0.0261006
chr20	41559726	41559825	7564235	0	-	0.484848	(0.45,0.485]	chr20	790090	80	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	130	2	3.82378	5.220515000000001	6.61725	0.0039984	0.00395394	0.0406092	0.0370532
chr10	131917589	131917688	4616192	0	+	0.545455	(0.523,0.58]	chr10	441069	46	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	58	2	4.96714	5.22048	5.47382	0.0244797	0.0108948	0.106683	0.0706366
chr10	18557567	18557667	4642304	0	-	0.43	(0.419,0.45]	chr10	443321	52	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	4.56048	5.22046	5.88044	0.0337332	0.0192645	0.133139	0.0954446
chr13	112692946	112693046	5652569	0	+	0.44	(0.419,0.45]	chr13	554894	21	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5	protein_coding	protein_coding	protein_coding	protein_coding	1	133	2	4.32098	5.22044	6.1199	0.0132894	0.00139866	0.0787251	0.0179877
chr2	171015546	171015645	1312714	0	-	0.181818	[0,0.29]	chr2	140568	2	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	58	2	4.68855	5.22037	5.75219	0.0554735	0.00142668	0.154188	0.0182112
chr9	129609178	129609278	4250922	0	+	0.63	(0.58,1]	chr9	404741	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	1	124	2	3.68463	5.22034	6.75605	0.00404771	0.00112759	0.0371291	0.0202727
chr11	70702262	70702362	5061303	0	-	0.47	(0.45,0.485]	chr11	492696	31	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	4.83755	5.2202649999999995	5.60298	0.06646	0.00292492	0.162385	0.029882
chr7	2041717	2041817	3530649	0	-	0.48	(0.45,0.485]	chr7	340995	267	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	4.83755	5.2202649999999995	5.60298	0.06646	0.00292492	0.162385	0.029882
chr8	61676719	61676819	3986611	0	-	0.36	(0.33,0.36]	chr8	381421	4	SS3_PROX	SS3_PROX:INTRON	ASPH	ENSG00000198363.18	ENST00000379454.9:ENST00000541428.5:ENST00000522349.5:ENST00000523927.5:ENST00000445642.6:ENST00000356457.9:ENST00000519234.5:ENST00000518068.5:ENST00000517903.5:ENST00000517847.6:ENST00000522835.5:ENST00000518306.5:ENST00000517856.5:ENST00000517928.1:ENST00000389204.8:ENST00000522603.5:ENST00000379449.10:ENST00000517661.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	155	2	3.58797	5.22019	6.85241	0.0207035	1.23574e-4	0.0986463	0.00321265
chr1	823508	823608	379745	0	-	0.58	(0.523,0.58]	chr1	42663	450	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000634337.2:ENST00000635509.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	57	2	5.08882	5.2200299999999995	5.35124	0.0295772	0.00834774	0.116079	0.0598672
chr17	82723286	82723386	6818118	0	+	0.53	(0.523,0.58]	chr17	689150	4	SS5_PROX	SS5_PROX:INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5:ENST00000571482.2:ENST00000576363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	57	2	5.08882	5.2200299999999995	5.35124	0.0295772	0.00834774	0.116079	0.0598672
chr19	45265310	45265410	7272255	0	+	0.56	(0.523,0.58]	chr19	746868	4	SS5_PROX	SS5_PROX:INTRON	MARK4	ENSG00000007047.16	ENST00000587566.5:ENST00000262891.9:ENST00000300843.8:ENST00000592762.5:ENST00000590909.1:ENST00000588533.5:ENST00000588621.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	57	2	5.08882	5.2200299999999995	5.35124	0.0295772	0.00834774	0.116079	0.0598672
chr20	62888093	62888191	7585190	0	-	0.561224	(0.523,0.58]	chr20	792848	10	UTR3	UTR3:EXON_MRNA:INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	5.08882	5.2200299999999995	5.35124	0.0295772	0.00834774	0.116079	0.0598672
chr2	149697822	149697922	920924	0	+	0.31	(0.29,0.33]	chr2	102788	1034	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	0	57	2	4.91217	5.219945	5.52772	0.0522244	0.00324812	0.148503	0.0319647
chr7	32818288	32818385	3342035	0	+	0.350515	(0.33,0.36]	chr7	323427	6	INTRON	INTRON	DPY19L1P2	ENSG00000231952.3	ENST00000426647.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	59	2	4.93777	5.219900000000001	5.50203	0.0265895	0.0144674	0.111433	0.0833845
chr16	18520496	18520596	6559089	0	-	0.42	(0.419,0.45]	chr16	653702	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000381474.7:ENST00000564991.5:ENST00000621364.4:ENST00000622306.5:ENST00000543392.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	58	2	5.04043	5.219885	5.39934	0.0625897	0.00646489	0.160305	0.0503748
chr19	6719780	6719841	7322984	0	-	0.442623	(0.419,0.45]	chr19	756566	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695652.1:ENST00000594936.2:ENST00000695693.1:ENST00000600744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	58	2	5.04043	5.219885	5.39934	0.0625897	0.00646489	0.160305	0.0503748
chr19	46977791	46977891	7275351	0	+	0.44	(0.419,0.45]	chr19	747275	400	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	58	2	5.04043	5.219885	5.39934	0.0625897	0.00646489	0.160305	0.0503748
chr12	46629895	46629995	5219493	0	+	0.33	(0.29,0.33]	chr12	506666	581	INTRON	INTRON	ENSG00000257261:ENSG00000272369	ENSG00000257261.7:ENSG00000272369.1	ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2:ENST00000607353.1	lncRNA	lncRNA	lncRNA	lncRNA	1	154	2	4.16182	5.219799999999999	6.27778	0.00639055	4.58752e-4	0.0529032	0.00821903
chr2	47904592	47904692	1143253	0	-	0.54	(0.523,0.58]	chr2	125015	1	SS5_PROX	SS5_PROX:INTRON	FBXO11	ENSG00000138081.22	ENST00000403359.8:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	172	2	3.37623	5.21974	7.06325	0.00375949	0.0014427	0.0353672	0.023287
chr11	68264561	68264658	5057265	0	-	0.494845	(0.485,0.523]	chr11	492361	3	INTRON	INTRON	C11orf24	ENSG00000171067.11	ENST00000304271.11:ENST00000533310.5:ENST00000530166.5:ENST00000527280.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	77	2	4.12717	5.2196549999999995	6.31214	0.0545434	0.00589975	0.167824	0.0506158
chr19	1169055	1169146	7305743	0	-	0.637363	(0.58,1]	chr19	753057	5	UTR5	UTR5:EXON_MRNA:INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5:ENST00000587655.2	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.88945	5.219615	5.54978	0.0388928	0.00165911	0.131324	0.0202545
chr19	41905074	41905136	7264273	0	+	0.677419	(0.58,1]	chr19	745336	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARHGEF1	ENSG00000076928.18	ENST00000600274.5:ENST00000354532.8:ENST00000599846.5:ENST00000347545.8:ENST00000378152.8:ENST00000337665.8:ENST00000599589.5:ENST00000595897.5:ENST00000595723.5:ENST00000600517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	55	2	4.88945	5.219615	5.54978	0.0388928	0.00165911	0.131324	0.0202545
chr6	170400462	170400562	3076584	0	+	0.62	(0.58,1]	chr6	299192	45	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.88945	5.219615	5.54978	0.0388928	0.00165911	0.131324	0.0202545
chr16	10537727	10537827	6547327	0	-	0.59	(0.58,1]	chr16	651696	4	SS5_PROX	SS5_PROX:INTRON	EMP2	ENSG00000213853.10	ENST00000359543.8:ENST00000536829.1	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	4.29454	5.219405	6.14427	0.0305531	0.00407804	0.126768	0.0413652
chr21	34978950	34979050	7656741	0	-	0.48	(0.45,0.485]	chr21	801067	856	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000482318.5:ENST00000455571.5:ENST00000475045.6:ENST00000416754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	133	2	3.70282	5.21924	6.73566	0.00539085	0.00318291	0.0450882	0.0360488
chr3	197291345	197291445	1991392	0	-	0.32	(0.29,0.33]	chr3	202718	81	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000661453.1:ENST00000664564.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000659716.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000666007.1:ENST00000661229.1:ENST00000661013.1:ENST00000436682.6:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000456699.6:ENST00000392380.6:ENST00000485409.5:ENST00000486877.1:ENST00000412364.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	57	2	5.07997	5.21922	5.35847	0.0269557	0.00913217	0.112113	0.0632458
chr7	101984099	101984199	3435655	0	+	0.3	(0.29,0.33]	chr7	332528	241	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	57	2	5.07997	5.21922	5.35847	0.0269557	0.00913217	0.112113	0.0632458
chr11	70875619	70875718	5063043	0	-	0.494949	(0.485,0.523]	chr11	492728	26	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000645599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	4.96361	5.21893	5.47425	0.0243396	0.0112713	0.106588	0.071709
chr10	79222672	79222772	4533588	0	+	0.59	(0.58,1]	chr10	432457	60	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.08534	5.21874	5.35214	0.0181452	0.00549379	0.0921579	0.0454065
chr9	123405586	123405686	4396616	0	-	0.6	(0.58,1]	chr9	419589	17	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	5.08534	5.21874	5.35214	0.0181452	0.00549379	0.0921579	0.0454065
chr2	11335201	11335301	1089307	0	-	0.29	[0,0.29]	chr2	118747	471	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	220	2	3.2476	5.21872	7.18984	0.00181379	4.94869e-4	0.0215865	0.012926
chr13	112971649	112971749	5655337	0	+	0.38	(0.36,0.39]	chr13	555120	18	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	5.10608	5.21857	5.33106	0.0383628	0.0111429	0.131324	0.071709
chr13	45414522	45414622	5703036	0	-	0.49	(0.485,0.523]	chr13	559528	22	INTRON	INTRON	SLC25A30	ENSG00000174032.17	ENST00000519676.6:ENST00000539591.5:ENST00000310862.11:ENST00000519547.5:ENST00000522438.1:ENST00000463262.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	5.08528	5.218475	5.35167	0.0294163	0.0086528	0.116079	0.0612699
chr22	50675751	50675843	7754921	0	+	0.5	(0.485,0.523]	chr22	812695	1	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	57	2	5.08528	5.218475	5.35167	0.0294163	0.0086528	0.116079	0.0612699
chrX	1448077	1448177	7965974	0	-	0.51	(0.485,0.523]	chrX	834314	54	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9:ENST00000474865.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.08528	5.218475	5.35167	0.0294163	0.0086528	0.116079	0.0612699
chr19	15644151	15644251	7215395	0	+	0.47	(0.45,0.485]	chr19	737138	1	SS5_PROX	SS5_PROX:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	150	2	3.30591	5.218425	7.13094	0.0135996	0.00151409	0.0811697	0.0240218
chr15	20443238	20443338	6202479	0	-	0.61	(0.58,1]	chr15	610289	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000424611.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	56	2	4.95814	5.218265000000001	5.47839	0.0145198	0.0074469	0.0823104	0.0553519
chr9	134413088	134413187	4261564	0	+	0.606061	(0.58,1]	chr9	406352	36	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000481739.2:ENST00000356384.4:ENST00000672570.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	4.95814	5.218265000000001	5.47839	0.0145198	0.0074469	0.0823104	0.0553519
chr13	113056102	113056201	5656198	0	+	0.626263	(0.58,1]	chr13	555189	13	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	1	138	2	4.06678	5.2179400000000005	6.3691	0.00544536	1.49225e-4	0.0486855	0.00367368
chr9	129610075	129610174	4250931	0	+	0.717172	(0.58,1]	chr9	404743	5	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	1	125	2	3.64686	5.217885	6.7889099999999996	0.00447535	0.00104954	0.0398484	0.0194601
chr9	126871101	126871201	4242883	0	+	0.4	(0.39,0.419]	chr9	402740	70	INTRON	INTRON	ZBTB34	ENSG00000177125.6	ENST00000319119.5:ENST00000695642.1	protein_coding	protein_coding	protein_coding	protein_coding	2	227	2	3.69924	5.217875	6.73651	0.00913559	2.05874e-4	0.0642287	0.00461335
chr11	18011320	18011417	5015372	0	-	0.463918	(0.45,0.485]	chr11	484704	8	INTRON	INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528200.5:ENST00000532265.5:ENST00000529728.5:ENST00000530613.5:ENST00000532389.5:ENST00000530925.5:ENST00000533328.5:ENST00000532212.5:ENST00000524716.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	216	2	3.65658	5.2177050000000005	6.77883	0.00854568	1.23522e-4	0.0621243	0.00321265
chr14	34995204	34995301	5777550	0	+	0.360825	(0.36,0.39]	chr14	566416	14	INTRON	INTRON	SRP54	ENSG00000100883.13	ENST00000556994.5:ENST00000678836.1:ENST00000546080.6:ENST00000554803.5:ENST00000555746.6:ENST00000678963.1:ENST00000677561.1:ENST00000678477.1:ENST00000677621.1:ENST00000553923.2:ENST00000679045.1:ENST00000678519.1:ENST00000553544.1:ENST00000678627.1:ENST00000216774.11:ENST00000555317.5:ENST00000555557.5:ENST00000678274.1:ENST00000556380.3:ENST00000555535.1:ENST00000677647.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	61	2	4.6317	5.217515000000001	5.80333	0.0950937	0.00231859	0.189021	0.0255753
chr1	6027177	6027255	6706	0	+	0.564103	(0.523,0.58]	chr1	1415	4	SS3_PROX	SS3_PROX:INTRON	KCNAB2	ENSG00000069424.16	ENST00000655548.1:ENST00000378111.6:ENST00000378097.6:ENST00000666163.1:ENST00000671676.1:ENST00000658883.1:ENST00000658691.1:ENST00000435937.6:ENST00000445501.6:ENST00000478098.5:ENST00000653262.1:ENST00000668706.1:ENST00000389632.9:ENST00000654144.1:ENST00000341524.6:ENST00000462676.3:ENST00000428161.6:ENST00000352527.6:ENST00000663169.1:ENST00000653635.1:ENST00000661248.1:ENST00000656198.1:ENST00000602612.5:ENST00000481789.2:ENST00000656746.1:ENST00000665338.1:ENST00000666299.1:ENST00000652845.1:ENST00000655703.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	65	2	4.5249	5.217435	5.90997	0.0266135	0.012016	0.118113	0.0743424
chr9	35831136	35831233	4145593	0	+	0.474227	(0.45,0.485]	chr9	394383	8	INTRON	INTRON	TMEM8B	ENSG00000137103.20	ENST00000377996.5:ENST00000643932.2:ENST00000439587.6:ENST00000377991.9:ENST00000650015.1:ENST00000464519.6:ENST00000377988.6:ENST00000473947.1:ENST00000490199.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	4.59225	5.217415	5.84258	0.0259502	0.0151085	0.116361	0.0841543
chr6	41723160	41723260	3132625	0	-	0.58	(0.523,0.58]	chr6	305482	3	SS5_PROX	SS5_PROX:INTRON	TFEB	ENSG00000112561.19	ENST00000358871.6:ENST00000373033.6:ENST00000230323.8:ENST00000677531.1:ENST00000403298.9:ENST00000420312.6:ENST00000424495.2:ENST00000678831.1:ENST00000419396.6:ENST00000416140.6:ENST00000678871.1:ENST00000394283.5:ENST00000679237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	176	2	4.30883	5.216805000000001	6.12478	0.00829271	2.66729e-4	0.0610772	0.00557451
chr4	26358000	26358100	2023391	0	+	0.36	(0.33,0.36]	chr4	206768	129	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5:ENST00000515573.5:ENST00000689192.1:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	157	2	4.00893	5.216795	6.42466	0.0100767	4.08653e-4	0.0678487	0.00759284
chr13	113021443	113021543	5655839	0	+	0.61	(0.58,1]	chr13	555145	62	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	60	2	4.66416	5.216749999999999	5.76934	0.0144381	0.00849371	0.0833845	0.0617717
chr3	39147320	39147419	1739962	0	-	0.636364	(0.58,1]	chr3	180188	2	INTRON	INTRON	CSRNP1	ENSG00000144655.15	ENST00000273153.10:ENST00000514182.1	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.66416	5.216749999999999	5.76934	0.0144381	0.00849371	0.0833845	0.0617717
chr5	104198189	104198289	2496771	0	+	0.44	(0.419,0.45]	chr5	248658	929	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	1	139	2	3.65526	5.2165300000000006	6.7778	0.00712959	0.00448826	0.0541241	0.0436138
chrX	44898385	44898485	7871925	0	+	0.52	(0.485,0.523]	chrX	825082	240	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	124	2	4.05608	5.216255	6.37643	0.0052506	0.00203265	0.0476984	0.0232814
chr10	74488361	74488461	4515063	0	+	0.37	(0.36,0.39]	chr10	431960	894	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	4.69932	5.215915000000001	5.73251	0.0877431	0.0027486	0.183437	0.028553
chr1	9113983	9114083	396413	0	-	0.52	(0.485,0.523]	chr1	45216	21	INTRON	INTRON	GPR157	ENSG00000180758.12	ENST00000377411.5:ENST00000466131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	65	2	4.52142	5.21591	5.9104	0.0273555	0.0119344	0.119337	0.0741726
chr2	111474765	111474863	1253390	0	-	0.408163	(0.39,0.419]	chr2	134923	23	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1:ENST00000673878.1:ENST00000439494.1	lncRNA	lncRNA	lncRNA	lncRNA	2	368	2	4.44375	5.215909999999999	5.98807	0.00526793	1.09697e-5	0.0478331	5.51097e-4
chr10	75726548	75726648	4523429	0	+	0.44	(0.419,0.45]	chr10	432271	786	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	4.98767	5.21587	5.44407	0.0669167	0.00585948	0.16272	0.0474117
chr7	66663078	66663177	3382035	0	+	0.444444	(0.419,0.45]	chr7	326325	81	INTRON	INTRON	ENSG00000226824	ENSG00000226824.8	ENST00000693151.1:ENST00000656515.2:ENST00000448096.1:ENST00000439360.5:ENST00000657342.1:ENST00000428557.1	lncRNA	lncRNA	lncRNA	lncRNA	0	58	2	4.98767	5.21587	5.44407	0.0669167	0.00585948	0.16272	0.0474117
chr9	33954162	33954257	4294295	0	-	0.368421	(0.36,0.39]	chr9	410391	3	INTRON	INTRON	UBAP2	ENSG00000137073.24	ENST00000379238.7:ENST00000683659.1:ENST00000682239.1:ENST00000683140.1:ENST00000682209.1:ENST00000681980.1:ENST00000360802.6:ENST00000683252.1:ENST00000684158.1:ENST00000682914.1:ENST00000683717.1:ENST00000379239.9:ENST00000683084.1:ENST00000684754.1:ENST00000629575.2:ENST00000684298.1:ENST00000412543.6:ENST00000421278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	62	2	4.56076	5.2158	5.87084	0.103289	0.00196738	0.197541	0.022768300000000002
chr1	12586535	12586635	402468	0	-	0.42	(0.419,0.45]	chr1	46222	55	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	138	2	3.68516	5.21577	6.74638	0.00665473	0.00473615	0.0515847	0.0449264
chr5	881766	881863	2608193	0	-	0.659794	(0.58,1]	chr5	259472	7	EXON_MRNA	EXON_MRNA:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	115	2	4.44822	5.21572	5.98322	0.00562007	4.4502e-4	0.0493906	0.00806076
chr17	78736491	78736591	6978859	0	-	0.42	(0.419,0.45]	chr17	712624	4	SS5_PROX	SS5_PROX:INTRON	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000591574.5:ENST00000589768.5:ENST00000591095.1:ENST00000592497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	64	2	4.63955	5.215215	5.79088	0.0293406	0.022052	0.125102	0.101502
chr17	77351798	77351898	6803877	0	+	0.61	(0.58,1]	chr17	686742	276	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	114	2	4.26089	5.2151700000000005	6.16945	0.00387582	7.87512e-4	0.0401256	0.0120243
chr14	94585761	94585858	5902757	0	+	0.484536	(0.45,0.485]	chr14	576956	31	INTRON	INTRON	SERPINA5	ENSG00000188488.14	ENST00000553780.5:ENST00000554220.5:ENST00000556730.1:ENST00000554866.5:ENST00000556775.5:ENST00000329597.12:ENST00000553511.1:ENST00000554633.5:ENST00000555681.1:ENST00000554276.1:ENST00000557598.1:ENST00000556064.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	61	2	4.74641	5.214855	5.6833	0.0195193	0.0193126	0.0994526	0.0955413
chr10	18554869	18554969	4642277	0	-	0.37	(0.36,0.39]	chr10	443321	25	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	4.56926	5.21482	5.86038	0.031369	0.0174081	0.127822	0.0901374
chr11	66628350	66628449	4876897	0	+	0.484848	(0.45,0.485]	chr11	469583	18	UTR3	UTR3:EXON_MRNA:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000511114.1:ENST00000310137.5:ENST00000421355.1:ENST00000500635.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	57	2	5.12938	5.214555000000001	5.29973	0.035042	0.00873194	0.12704	0.0612699
chr12	122562389	122562474	5344465	0	+	0.376471	(0.36,0.39]	chr12	522041	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KNTC1	ENSG00000184445.12	ENST00000450485.6:ENST00000333479.12	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.86249	5.2145150000000005	5.56654	0.0272676	0.0181775	0.112327	0.0955836
chr4	2827138	2827229	2000391	0	+	0.637363	(0.58,1]	chr4	203975	10	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SH3BP2	ENSG00000087266.17	ENST00000503393.8:ENST00000504294.5:ENST00000508385.5:ENST00000511663.5:ENST00000512014.5:ENST00000435136.8:ENST00000511185.5:ENST00000511747.6:ENST00000356331.9:ENST00000515737.5:ENST00000515183.5:ENST00000505941.5:ENST00000510204.5:ENST00000515802.5:ENST00000504450.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	116	2	4.53348	5.2144449999999996	5.89541	0.0066708	3.41282e-4	0.0540577	0.00667174
chr22	24985748	24985848	7698882	0	+	0.49	(0.485,0.523]	chr22	805865	326	INTRON	INTRON	KIAA1671	ENSG00000197077.14	ENST00000358431.8:ENST00000406486.8	protein_coding	protein_coding	protein_coding	protein_coding	1	127	2	4.5471	5.214125	5.88115	0.012541	5.20483e-4	0.0761905	0.00899129
chr14	89335655	89335755	6027459	0	-	0.27	[0,0.29]	chr14	591456	20	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	55	2	5.1579	5.21396	5.27002	0.0269673	0.0048238	0.112113	0.0417661
chr7	29473412	29473512	3337095	0	+	0.4	(0.39,0.419]	chr7	322914	722	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000474070.5:ENST00000222792.11:ENST00000446446.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	4.86193	5.2135549999999995	5.56518	0.027797	0.0182739	0.112962	0.0958352
chr19	55266586	55266686	7407583	0	-	0.43	(0.419,0.45]	chr19	771325	3	SS3_PROX	SS3_PROX:INTRON	HSPBP1	ENSG00000133265.11	ENST00000433386.7:ENST00000255631.9:ENST00000587922.5:ENST00000585927.1:ENST00000587959.1	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	4.81671	5.213509999999999	5.61031	0.08258	0.004032	0.179396	0.0371291
chr10	18572656	18572756	4642455	0	-	0.41	(0.39,0.419]	chr10	443321	203	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	158	2	3.58573	5.213445	6.84116	0.0226583	1.53866e-4	0.102982	0.00374891
chr14	68897895	68897994	5999318	0	-	0.606061	(0.58,1]	chr14	588704	38	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	117	2	3.9245	5.2134	6.5023	0.00209574	0.00194503	0.0275844	0.0238576
chr1	31579103	31579203	81036	0	+	0.5	(0.485,0.523]	chr1	9282	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	LINC01226:TINAGL1	ENSG00000284543.1:ENSG00000142910.16	ENST00000639839.1:ENST00000640226.1:ENST00000457433.6:ENST00000271064.12:ENST00000461030.5:ENST00000478398.5:ENST00000481165.5:ENST00000537531.2:ENST00000468635.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	1	150	2	3.26255	5.213395	7.16424	0.0142848	0.0011719	0.0833845	0.0206836
chr6	31652059	31652158	3119043	0	-	0.626263	(0.58,1]	chr6	303154	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BAG6	ENSG00000204463.14	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.2:ENST00000375976.8:ENST00000362049.10:ENST00000439687.6:ENST00000437771.5:ENST00000435080.5:ENST00000456622.5:ENST00000452994.5:ENST00000428326.5:ENST00000451898.5:ENST00000424480.5:ENST00000424176.5:ENST00000441054.5:ENST00000454165.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	114	2	4.33402	5.21329	6.09256	0.00452436	6.31529e-4	0.0436138	0.0102754
chr3	14403347	14403446	1414980	0	+	0.616162	(0.58,1]	chr3	151901	1	INTRON	INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000622810.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000613930.4:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	119	2	4.69024	5.21313	5.73602	0.00904546	2.07711e-4	0.0637469	0.00464072
chr20	382000	382083	7414320	0	+	0.783133	(0.58,1]	chr20	772275	1	SS3_PROX	SS3_PROX:INTRON	TRIB3	ENSG00000101255.12	ENST00000615226.4:ENST00000217233.9:ENST00000449710.5:ENST00000422053.3	protein_coding	protein_coding	protein_coding	protein_coding	6	254	2	3.29216	5.2131	7.13404	7.31524e-4	4.87191e-4	0.0127785	0.0114041
chr16	72257503	72257602	6621120	0	-	0.414141	(0.39,0.419]	chr16	663375	77	INTRON	INTRON	LINC01572	ENSG00000261008.8	ENST00000669279.1:ENST00000661899.1	lncRNA	lncRNA	lncRNA	lncRNA	0	62	2	4.72276	5.212985	5.70321	0.0238104	0.0226065	0.111436	0.102982
chr19	6229279	6229378	7321304	0	-	0.555556	(0.523,0.58]	chr19	756087	18	INTRON	INTRON	MLLT1	ENSG00000130382.9	ENST00000252674.9	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.1205	5.2128250000000005	5.30515	0.0416463	0.00509102	0.136301	0.0433513
chr12	65837619	65837719	5255570	0	+	0.34	(0.33,0.36]	chr12	512284	67	INTRON	INTRON	HMGA2	ENSG00000149948.14	ENST00000354636.7:ENST00000536545.5:ENST00000425208.6:ENST00000537429.5:ENST00000393578.7:ENST00000537275.5:ENST00000403681.7:ENST00000541363.5:ENST00000393577.7:ENST00000539662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	58	2	4.83538	5.212705	5.59003	0.0679743	0.00344516	0.164413	0.0333853
chrX	111685278	111685359	7935644	0	+	0.358025	(0.33,0.36]	chrX	830455	1	SS5_PROX	SS5_PROX:INTRON	ALG13	ENSG00000101901.12	ENST00000487141.5:ENST00000371979.7:ENST00000394780.8:ENST00000251943.8:ENST00000610588.4:ENST00000621367.4:ENST00000622997.3:ENST00000624161.3:ENST00000636363.1:ENST00000624881.3:ENST00000468657.5:ENST00000473389.5:ENST00000482374.5:ENST00000492038.5:ENST00000495283.5:ENST00000486353.5:ENST00000623144.3:ENST00000470971.5:ENST00000489033.5:ENST00000623255.1:ENST00000623148.3:ENST00000471924.5:ENST00000436609.5:ENST00000482742.5:ENST00000623189.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	5.00642	5.21261	5.4188	0.0542065	0.00513015	0.151733	0.0435186
chr2	63550187	63550286	1162949	0	-	0.444444	(0.419,0.45]	chr2	127171	569	INTRON	INTRON	WDPCP	ENSG00000143951.16	ENST00000272321.12:ENST00000409562.7:ENST00000409835.5:ENST00000417238.5:ENST00000418148.5:ENST00000490935.5:ENST00000431065.1:ENST00000467687.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	59	2	4.98054	5.212505	5.44447	0.0364384	0.0154548	0.128173	0.0869771
chr8	38770792	38770892	3802263	0	+	0.51	(0.485,0.523]	chr8	365828	130	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	442	2	4.4285	5.212479999999999	5.99646	0.00173704	5.81992e-6	0.0258046	3.51962e-4
chr2	87653624	87653724	849195	0	+	0.48	(0.45,0.485]	chr2	95792	170	INTRON	INTRON	ENSG00000284879	ENSG00000284879.1	ENST00000643276.1:ENST00000646855.1	lncRNA	lncRNA	lncRNA	lncRNA	0	62	2	4.49786	5.212455	5.92705	0.101311	0.00129636	0.196131	0.0170746
chr13	112873431	112873501	5654407	0	+	0.528571	(0.523,0.58]	chr13	555054	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000471555.5:ENST00000415301.2:ENST00000419631.1:ENST00000495930.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	57	2	4.84569	5.212245	5.5788	0.0610722	0.00262418	0.158506	0.0278348
chr6	326158	326258	2824089	0	+	0.58	(0.523,0.58]	chr6	277202	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DUSP22	ENSG00000112679.15	ENST00000603296.5:ENST00000344450.9:ENST00000603453.5:ENST00000605315.5:ENST00000603881.5:ENST00000603795.5:ENST00000605035.5:ENST00000605863.5:ENST00000419235.7:ENST00000603005.5:ENST00000603726.5:ENST00000603290.1:ENST00000605391.5:ENST00000604971.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	59	2	4.65157	5.21222	5.77287	0.0787008	0.00160162	0.175203	0.0197827
chr10	18559965	18560065	4642328	0	-	0.4	(0.39,0.419]	chr10	443321	76	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	79	2	4.09132	5.212199999999999	6.33308	0.0689553	0.00825437	0.193274	0.0609913
chr17	72559220	72559320	6963903	0	-	0.47	(0.45,0.485]	chr17	710389	248	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	129	2	4.52271	5.21219	5.90167	0.0137135	6.22398e-4	0.0799457	0.0101764
chr9	33010208	33010308	4292426	0	-	0.53	(0.523,0.58]	chr9	410020	87	INTRON	INTRON	APTX	ENSG00000137074.20	ENST00000673360.1:ENST00000436040.7:ENST00000673487.1:ENST00000467331.6:ENST00000482687.6:ENST00000485479.6:ENST00000460940.6:ENST00000673248.1:ENST00000495360.6:ENST00000672281.1:ENST00000468275.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	56	2	5.06957	5.212045	5.35452	0.0448011	0.00453096	0.140478	0.0400651
chr17	17591330	17591430	6865590	0	-	0.75	(0.58,1]	chr17	695837	4	SS5_PROX	SS5_PROX:INTRON	PEMT	ENSG00000133027.18	ENST00000255389.10:ENST00000435340.6:ENST00000395781.6:ENST00000580147.5:ENST00000421096.5:ENST00000472446.1:ENST00000461404.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	54	2	5.11355	5.211955	5.31036	0.0271806	0.00312721	0.112113	0.0311915
chr6	158027465	158027564	3059767	0	+	0.636364	(0.58,1]	chr6	297374	2	EXON_MRNA	EXON_MRNA:INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2:ENST00000640569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	5.11355	5.211955	5.31036	0.0271806	0.00312721	0.112113	0.0311915
chr9	93623069	93623169	4184120	0	+	0.58	(0.523,0.58]	chr9	397705	458	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.16969	5.21186	5.25403	0.0387762	0.00573579	0.131324	0.0467736
chr18	76424060	76424160	7179360	0	-	0.51	(0.485,0.523]	chr18	730080	434	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	1	149	2	3.78195	5.211790000000001	6.64163	0.0136284	1.50187e-4	0.0797406	0.0036849
chr16	20904311	20904411	6418002	0	+	0.38	(0.36,0.39]	chr16	634694	12	INTRON	INTRON	LYRM1	ENSG00000102897.10	ENST00000568663.5:ENST00000412082.6:ENST00000439021.5:ENST00000567165.5:ENST00000569023.5:ENST00000568820.5:ENST00000562740.5:ENST00000219168.8:ENST00000567954.6:ENST00000396052.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	58	2	4.885	5.211774999999999	5.53855	0.0697729	0.00432809	0.167185	0.0389438
chr9	124887552	124887652	4405513	0	-	0.38	(0.36,0.39]	chr9	419945	46	INTRON	INTRON	GOLGA1	ENSG00000136935.14	ENST00000373555.9:ENST00000475407.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	58	2	4.885	5.211774999999999	5.53855	0.0697729	0.00432809	0.167185	0.0389438
chr1	21758183	21758283	421013	0	-	0.35	(0.33,0.36]	chr1	49209	4	SS3_PROX	SS3_PROX:INTRON	USP48	ENSG00000090686.16	ENST00000400301.5:ENST00000308271.14:ENST00000529637.5:ENST00000421625.6:ENST00000527823.5:ENST00000532737.1:ENST00000489108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	4.99985	5.21176	5.42367	0.0299185	0.0127452	0.116945	0.0773423
chr1	2231307	2231405	4523	0	+	0.510204	(0.485,0.523]	chr1	1044	12	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	1	123	2	4.20112	5.211410000000001	6.2217	0.00693912	0.00137422	0.0553898	0.0177822
chr13	45500074	45500172	5583524	0	+	0.295918	(0.29,0.33]	chr13	550643	34	INTRON	INTRON	COG3	ENSG00000136152.15	ENST00000349995.10:ENST00000465942.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	4.85285	5.21136	5.56987	0.0567079	0.0029307	0.154343	0.0298918
chr2	135654814	135654913	901778	0	+	0.323232	(0.29,0.33]	chr2	101640	24	INTRON	INTRON	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000410054.5:ENST00000628915.2:ENST00000409606.5:ENST00000429703.6	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.85285	5.21136	5.56987	0.0567079	0.0029307	0.154343	0.0298918
chr11	59769914	59770014	4860007	0	+	0.55	(0.523,0.58]	chr11	465484	139	INTRON	INTRON	STX3	ENSG00000166900.17	ENST00000641815.1:ENST00000337979.9:ENST00000533637.5:ENST00000633708.1:ENST00000529177.5:ENST00000530498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	57	2	5.02927	5.211270000000001	5.39327	0.0277354	0.0095202	0.112851	0.0650078
chr22	42968877	42968977	7823821	0	-	0.57	(0.523,0.58]	chr22	820626	91	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.02927	5.211270000000001	5.39327	0.0277354	0.0095202	0.112851	0.0650078
chr7	139701546	139701646	3723161	0	-	0.54	(0.523,0.58]	chr7	357498	695	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	5.02927	5.211270000000001	5.39327	0.0277354	0.0095202	0.112851	0.0650078
chr22	36329448	36329547	7806813	0	-	0.585859	(0.58,1]	chr22	818135	6	INTRON	INTRON	MYH9	ENSG00000100345.23	ENST00000216181.11:ENST00000685801.1:ENST00000692930.1:ENST00000685187.1:ENST00000691687.1:ENST00000685191.1:ENST00000688137.1:ENST00000401701.1:ENST00000691296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	5.0607	5.2111149999999995	5.36153	0.029633	0.00273899	0.116079	0.028553
chr6	41705446	41705546	3132447	0	-	0.59	(0.58,1]	chr6	305478	4	SS5_PROX	SS5_PROX:INTRON	TFEB	ENSG00000112561.19	ENST00000358871.6:ENST00000373033.6:ENST00000230323.8:ENST00000677531.1:ENST00000403298.9:ENST00000420312.6:ENST00000424495.2:ENST00000678831.1:ENST00000419396.6:ENST00000416140.6:ENST00000419574.6:ENST00000445214.2:ENST00000678871.1:ENST00000394283.5:ENST00000679237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	5.0607	5.2111149999999995	5.36153	0.029633	0.00273899	0.116079	0.028553
chr7	215562	215662	3305810	0	+	0.69	(0.58,1]	chr7	320161	62	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.0607	5.2111149999999995	5.36153	0.029633	0.00273899	0.116079	0.028553
chr11	70814366	70814466	5062427	0	-	0.63	(0.58,1]	chr11	492713	68	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	5.16453	5.21092	5.25731	0.0249802	0.00358178	0.10758	0.0342681
chr4	6300356	6300456	2010605	0	+	0.64	(0.58,1]	chr4	205142	3	SS3_PROX	SS3_PROX:INTRON	WFS1	ENSG00000109501.15	ENST00000673991.1:ENST00000503569.5:ENST00000226760.5:ENST00000682275.1:ENST00000506362.2:ENST00000684087.1:ENST00000683395.1:ENST00000673642.1:ENST00000507765.1:ENST00000513395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	5.16453	5.21092	5.25731	0.0249802	0.00358178	0.10758	0.0342681
chr1	5874070	5874170	386556	0	-	0.5	(0.485,0.523]	chr1	44376	2	SS5_PROX	SS5_PROX:INTRON	NPHP4	ENSG00000131697.18	ENST00000378156.9:ENST00000478423.6:ENST00000489180.6:ENST00000378169.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	128	2	4.60039	5.2105999999999995	5.82081	0.0138807	4.46264e-4	0.0804838	0.00807719
chr16	85389936	85390036	6516970	0	+	0.54	(0.523,0.58]	chr16	646391	306	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	4.83424	5.210520000000001	5.5868	0.020474	0.0144272	0.0979776	0.0833845
chr6	1870428	1870528	3081577	0	-	0.58	(0.523,0.58]	chr6	299482	1275	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	126	2	4.54015	5.210435	5.88072	0.0126258	5.15707e-4	0.0761905	0.00894095
chr1	35728931	35729030	445747	0	-	0.50505	(0.485,0.523]	chr1	53072	76	INTRON	INTRON	CLSPN	ENSG00000092853.14	ENST00000251195.9	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.17012	5.2103	5.25048	0.038581	0.0059614	0.131324	0.0479866
chr2	241156920	241157016	1075493	0	+	0.489583	(0.485,0.523]	chr2	116744	13	INTRON	INTRON	PPP1R7	ENSG00000115685.15	ENST00000438799.5:ENST00000402734.5:ENST00000423280.5:ENST00000407025.5:ENST00000272983.12:ENST00000404405.7:ENST00000234038.11:ENST00000439916.5:ENST00000473017.5:ENST00000406106.7:ENST00000498170.5:ENST00000493374.5:ENST00000401987.5:ENST00000427172.5:ENST00000450367.1:ENST00000467159.5:ENST00000485630.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	56	2	5.17012	5.2103	5.25048	0.038581	0.0059614	0.131324	0.0479866
chr1	14952136	14952235	43929	0	+	0.474747	(0.45,0.485]	chr1	4388	56	INTRON	INTRON	KAZN	ENSG00000189337.17	ENST00000636203.1:ENST00000376030.7:ENST00000491547.1:ENST00000503743.5:ENST00000361144.9:ENST00000400798.6:ENST00000376028.8:ENST00000400797.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	62	2	4.67139	5.21026	5.74913	0.0223378	0.017574	0.108193	0.0906595
chr7	137998958	137999058	3720692	0	-	0.46	(0.45,0.485]	chr7	357307	652	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.67139	5.21026	5.74913	0.0223378	0.017574	0.108193	0.0906595
chr16	954052	954152	6531574	0	-	0.53	(0.523,0.58]	chr16	648706	3	SS5_PROX	SS5_PROX:INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1:ENST00000566609.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	60	2	4.7629	5.210195000000001	5.65749	0.0182707	0.0167014	0.0921579	0.0917029
chr19	17483481	17483581	7220767	0	+	0.53	(0.523,0.58]	chr19	738260	2	SS3_PROX	SS3_PROX:INTRON	SLC27A1	ENSG00000130304.17	ENST00000600277.5:ENST00000598424.5:ENST00000252595.12:ENST00000599380.5:ENST00000600297.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	4.7629	5.210195000000001	5.65749	0.0182707	0.0167014	0.0921579	0.0917029
chr1	246642829	246642927	373683	0	+	0.428571	(0.419,0.45]	chr1	42076	4	INTRON	INTRON	CNST	ENSG00000162852.14	ENST00000483271.1:ENST00000366513.9:ENST00000366512.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	4.9329	5.210179999999999	5.48746	0.0716557	0.00532156	0.168159	0.0446153
chr5	14382848	14382948	2385772	0	+	0.43	(0.419,0.45]	chr5	238593	12	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000512070.6:ENST00000509967.6:ENST00000513206.5:ENST00000515144.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	58	2	4.9329	5.210179999999999	5.48746	0.0716557	0.00532156	0.168159	0.0446153
chr2	46303630	46303730	784704	0	+	0.41	(0.39,0.419]	chr2	89746	53	INTRON	INTRON	EPAS1	ENSG00000116016.14	ENST00000460015.1:ENST00000449347.5:ENST00000263734.5:ENST00000467888.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	5.04836	5.210039999999999	5.37172	0.0367885	0.0126072	0.129052	0.0768036
chr8	122959404	122959504	3911443	0	+	0.36	(0.33,0.36]	chr8	373499	50	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	4.57958	5.209975	5.84037	0.0288057	0.0156381	0.123764	0.0850479
chr16	85230765	85230865	6515376	0	+	0.42	(0.419,0.45]	chr16	646377	30	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	178	2	4.34373	5.20984	6.07595	0.00691582	0.00132452	0.0553898	0.0173138
chr11	71069058	71069158	5064984	0	-	0.49	(0.485,0.523]	chr11	492754	121	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000618363.4:ENST00000458632.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	57	2	5.02573	5.20971	5.39369	0.0275819	0.00985879	0.112782	0.0664239
chr6	88835970	88836070	3200699	0	-	0.29	[0,0.29]	chr6	310413	340	INTRON	INTRON	RNGTT	ENSG00000111880.16	ENST00000369485.9:ENST00000369475.7:ENST00000627296.1:ENST00000538899.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	119	2	4.30734	5.2096350000000005	6.11193	0.00480124	8.93369e-4	0.0452644	0.0131462
chr17	58368931	58369029	6932558	0	-	0.612245	(0.58,1]	chr17	706609	50	INTRON	INTRON	RNF43	ENSG00000108375.13	ENST00000577716.5:ENST00000407977.7:ENST00000584437.5:ENST00000583753.5:ENST00000577625.5:ENST00000581868.1	protein_coding	protein_coding	protein_coding	protein_coding	1	114	2	4.13012	5.20963	6.28914	0.00303562	0.00116063	0.0350226	0.0157704
chr19	16131332	16131427	7216452	0	+	0.4	(0.39,0.419]	chr19	737377	14	INTRON	INTRON	RAB8A	ENSG00000167461.12	ENST00000300935.8:ENST00000586682.1:ENST00000592971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	130	2	3.98343	5.20955	6.43567	0.00694268	0.00309726	0.0553898	0.0311614
chr6	3402509	3402609	3087516	0	-	0.54	(0.523,0.58]	chr6	299778	247	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	152	2	4.03399	5.2095400000000005	6.38509	0.00870536	3.00426e-4	0.0626162	0.00607383
chr8	133288259	133288350	4084207	0	-	0.538462	(0.523,0.58]	chr8	388353	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000676005.1:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1:ENST00000674839.1:ENST00000676064.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	307	2	4.68294	5.209515	5.73609	0.0017613	0.00104319	0.0211077	0.019403
chr10	102650972	102651071	4576534	0	+	0.656566	(0.58,1]	chr10	437284	13	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1:ENST00000487927.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	55	2	5.02314	5.2093	5.39546	0.0168207	0.00638322	0.0884836	0.0501889
chr9	41359452	41359552	4155393	0	+	0.61	(0.58,1]	chr9	395188	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000288891	ENSG00000288891.1	ENST00000692789.1:ENST00000686353.1	lncRNA	lncRNA	lncRNA	lncRNA	0	55	2	5.02314	5.2093	5.39546	0.0168207	0.00638322	0.0884836	0.0501889
chr17	72494060	72494159	6963241	0	-	0.484848	(0.45,0.485]	chr17	710350	54	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000648907.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000650483.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000647593.1:ENST00000649311.1:ENST00000648520.1:ENST00000649250.1:ENST00000648069.1:ENST00000647953.1:ENST00000648176.2:ENST00000648403.1:ENST00000649269.1:ENST00000577828.6:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1:ENST00000650510.1:ENST00000649013.1:ENST00000647850.1:ENST00000648500.1	lncRNA	lncRNA	lncRNA	lncRNA	0	58	2	4.77571	5.209255000000001	5.6428	0.0719884	0.00265386	0.168159	0.027979
chr21	34839400	34839500	7655338	0	-	0.47	(0.45,0.485]	chr21	801030	44	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000469087.1:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	58	2	4.77571	5.209255000000001	5.6428	0.0719884	0.00265386	0.168159	0.027979
chr7	94928207	94928307	3418991	0	+	0.45	(0.419,0.45]	chr7	330364	163	INTRON	INTRON	PPP1R9A	ENSG00000158528.12	ENST00000433360.6:ENST00000340694.8:ENST00000424654.5:ENST00000433881.5:ENST00000456331.6:ENST00000289495.7	protein_coding	protein_coding	protein_coding	protein_coding	1	131	2	4.07217	5.20925	6.34633	0.00923958	0.00262794	0.0644666	0.027842
chr19	48996428	48996528	7280727	0	+	0.55	(0.523,0.58]	chr19	748149	11	INTRON	INTRON	RUVBL2	ENSG00000183207.14	ENST00000601968.5:ENST00000596837.5:ENST00000595090.6:ENST00000595811.5:ENST00000594017.5:ENST00000596247.5:ENST00000598768.1:ENST00000221413.10:ENST00000593570.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	56	2	5.20104	5.209155	5.21727	0.0361597	0.00648051	0.127853	0.0503748
chr7	47473709	47473809	3588545	0	-	0.56	(0.523,0.58]	chr7	346123	206	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	123	2	4.04167	5.2088350000000005	6.376	0.00529293	0.00206682	0.047841	0.0235758
chr16	84125013	84125108	6649302	0	-	0.410526	(0.39,0.419]	chr16	665181	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	HSDL1	ENSG00000103160.12	ENST00000219439.9:ENST00000619773.1:ENST00000434463.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	59	2	4.92679	5.208835	5.49088	0.0309972	0.0160946	0.119758	0.0896852
chr6	17615516	17615613	3104475	0	-	0.42268	(0.419,0.45]	chr6	300926	6	UTR3	UTR3:EXON_MRNA	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	2	186	2	4.17988	5.208715	6.23755	0.0110181	6.1411e-4	0.0708586	0.0101036
chr14	31162899	31162999	5952685	0	-	0.46	(0.45,0.485]	chr14	583296	52	INTRON	INTRON	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000691390.1:ENST00000553957.6:ENST00000687002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	126	2	3.9881	5.208655	6.42921	0.00554658	0.0026335	0.0492398	0.0278798
chr16	8839915	8840014	6382793	0	+	0.50505	(0.485,0.523]	chr16	631333	108	INTRON	INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000683435.1:ENST00000683094.1:ENST00000566604.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000567697.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	60	2	4.75939	5.2086500000000004	5.65791	0.0181582	0.0172254	0.0923809	0.0921579
chr2	121480215	121480315	1262528	0	-	0.49	(0.485,0.523]	chr2	136083	99	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	60	2	4.75939	5.2086500000000004	5.65791	0.0181582	0.0172254	0.0923809	0.0921579
chr2	238370072	238370172	1073632	0	+	0.44	(0.419,0.45]	chr2	116402	136	INTRON	INTRON	TRAF3IP1	ENSG00000204104.12	ENST00000391993.7:ENST00000373327.5:ENST00000462122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	61	2	4.62273	5.20853	5.79433	0.103601	0.00262626	0.197541	0.0278348
chr9	122012643	122012743	4392294	0	-	0.42	(0.419,0.45]	chr9	419148	225	INTRON	INTRON	TTLL11	ENSG00000175764.17	ENST00000321582.11:ENST00000373778.5:ENST00000474723.5:ENST00000685478.1:ENST00000373776.5:ENST00000487468.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	61	2	4.62273	5.20853	5.79433	0.103601	0.00262626	0.197541	0.0278348
chr3	128492840	128492939	1563224	0	+	0.79798	(0.58,1]	chr3	165331	24	INTRON	INTRON	GATA2-AS1	ENSG00000244300.3	ENST00000464242.1:ENST00000468377.1:ENST00000669945.1	lncRNA	lncRNA	lncRNA	lncRNA	0	57	2	4.62403	5.20843	5.79283	0.0578275	8.4246e-4	0.154343	0.0125912
chr2	142932732	142932832	905185	0	+	0.59	(0.58,1]	chr2	102027	46	INTRON	INTRON	KYNU	ENSG00000115919.15	ENST00000375773.6:ENST00000264170.9:ENST00000409512.5:ENST00000410015.6:ENST00000424385.5:ENST00000621320.4:ENST00000612147.4:ENST00000460143.1:ENST00000613664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	5.00585	5.208394999999999	5.41094	0.0323732	0.00240622	0.121593	0.0261006
chr22	19816522	19816621	7764389	0	-	0.59596	(0.58,1]	chr22	813901	37	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	5.00585	5.208394999999999	5.41094	0.0323732	0.00240622	0.121593	0.0261006
chr7	220551	220650	3305860	0	+	0.585859	(0.58,1]	chr7	320161	112	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.00585	5.208394999999999	5.41094	0.0323732	0.00240622	0.121593	0.0261006
chr22	28910504	28910604	7705546	0	+	0.44	(0.419,0.45]	chr22	806317	261	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7	protein_coding	protein_coding	protein_coding	protein_coding	1	131	2	4.04936	5.208245	6.36713	0.00893106	0.0027809	0.0637469	0.0287781
chr5	154863006	154863106	2573012	0	+	0.33	(0.29,0.33]	chr5	255695	4	SS3_PROX	SS3_PROX:INTRON	CNOT8	ENSG00000155508.14	ENST00000521174.5:ENST00000523698.5:ENST00000517876.5:ENST00000520472.5:ENST00000519211.5:ENST00000522458.5:ENST00000403027.6:ENST00000521450.5:ENST00000519903.5:ENST00000517568.5:ENST00000524105.5:ENST00000519430.5:ENST00000285896.11:ENST00000521583.5:ENST00000520671.5:ENST00000518028.5:ENST00000519404.5:ENST00000521729.5:ENST00000519394.5:ENST00000518775.5:ENST00000522644.5:ENST00000521402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	143	2	3.37208	5.20821	7.04434	0.0113763	0.0012838	0.0721226	0.0218621
chr10	15149441	15149541	4636635	0	-	0.48	(0.45,0.485]	chr10	443033	75	INTRON	INTRON	NMT2	ENSG00000152465.18	ENST00000378165.9:ENST00000378150.1	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.95056	5.20807	5.46558	0.0273644	0.0127826	0.112372	0.0773423
chr1	54874195	54874294	490992	0	-	0.454545	(0.45,0.485]	chr1	58452	22	INTRON	INTRON	DHCR24	ENSG00000116133.13	ENST00000371269.9:ENST00000647912.1:ENST00000535035.6:ENST00000649769.1:ENST00000648712.1:ENST00000648728.1:ENST00000436604.2:ENST00000647585.1:ENST00000648641.1:ENST00000650362.1:ENST00000648182.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	220	2	3.76813	5.20806	6.64799	0.00696296	1.80357e-4	0.0555169	0.00419938
chr11	61274198	61274298	5041321	0	-	0.63	(0.58,1]	chr11	488768	3	SS5_PROX	SS5_PROX:INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	5.20223	5.208	5.21377	0.0230012	0.00411607	0.102982	0.0374453
chr11	70814766	70814866	5062431	0	-	0.6	(0.58,1]	chr11	492713	72	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	5.20223	5.208	5.21377	0.0230012	0.00411607	0.102982	0.0374453
chr17	81142695	81142795	6982929	0	-	0.68	(0.58,1]	chr17	713268	78	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	54	2	5.20223	5.208	5.21377	0.0230012	0.00411607	0.102982	0.0374453
chr20	32480783	32480882	7543676	0	-	0.626263	(0.58,1]	chr20	787372	57	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	5.20223	5.208	5.21377	0.0230012	0.00411607	0.102982	0.0374453
chr1	43564704	43564804	107086	0	+	0.63	(0.58,1]	chr1	13192	104	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	115	2	4.01623	5.207940000000001	6.39965	0.00241374	0.00161478	0.0309229	0.0199131
chr1	201467583	201467683	642262	0	-	0.46	(0.45,0.485]	chr1	75885	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PHLDA3	ENSG00000174307.7	ENST00000367311.5:ENST00000485436.1:ENST00000367309.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	128	2	3.8525	5.20793	6.56336	0.00436001	0.00372052	0.0427656	0.0350519
chr6	143270921	143271020	3015540	0	+	0.454545	(0.45,0.485]	chr6	294885	805	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000275235.8:ENST00000458219.1	protein_coding	protein_coding	protein_coding	protein_coding	1	125	2	4.11205	5.207715	6.30338	0.00692617	0.00190576	0.0553898	0.0222917
chr10	87221555	87221654	4723358	0	-	0.343434	(0.33,0.36]	chr10	450862	78	INTRON	INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6	lncRNA	lncRNA	lncRNA	lncRNA	0	59	2	4.70894	5.207625	5.70631	0.0798152	0.00260751	0.176933	0.0278222
chr3	82229894	82229994	1508683	0	+	0.35	(0.33,0.36]	chr3	161017	222	INTRON	INTRON	LINC02008	ENSG00000239440.6	ENST00000470263.5:ENST00000494340.2:ENST00000666519.1:ENST00000668833.1:ENST00000653255.1:ENST00000666096.1	lncRNA	lncRNA	lncRNA	lncRNA	0	59	2	4.70894	5.207625	5.70631	0.0798152	0.00260751	0.176933	0.0278222
chr1	156210825	156210923	251499	0	+	0.479592	(0.45,0.485]	chr1	29578	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SLC25A44	ENSG00000160785.14	ENST00000423538.6:ENST00000684582.1:ENST00000359511.5:ENST00000469537.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.0722	5.207604999999999	5.34301	0.0328801	0.00988295	0.122593	0.0664239
chr6	52552824	52552924	3148206	0	-	0.49	(0.485,0.523]	chr6	307028	166	INTRON	INTRON	TRAM2	ENSG00000065308.5	ENST00000182527.4	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.19749	5.20759	5.21769	0.0359739	0.00672953	0.127853	0.0519464
chr8	118035624	118035724	4048979	0	-	0.36	(0.33,0.36]	chr8	386022	185	INTRON	INTRON	EXT1	ENSG00000182197.13	ENST00000378204.7:ENST00000437196.1:ENST00000436216.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	4.95163	5.20759	5.46355	0.0583482	0.00462971	0.155373	0.0408278
chr9	135848538	135848638	4431232	0	-	0.52	(0.485,0.523]	chr9	423507	206	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.19749	5.20759	5.21769	0.0359739	0.00672953	0.127853	0.0519464
chr9	109016218	109016317	4363905	0	-	0.40404	(0.39,0.419]	chr9	416757	12	UTR3	UTR3:EXON_MRNA	TMEM245	ENSG00000106771.13	ENST00000374586.8	protein_coding	protein_coding	protein_coding	protein_coding	1	132	2	4.44232	5.20745	5.97258	0.0148746	9.49224e-4	0.0833515	0.0136465
chr6	154779634	154779733	3044576	0	+	0.373737	(0.36,0.39]	chr6	296638	12	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.1004	5.207405	5.31441	0.0526991	0.00715023	0.14912	0.0541241
chr7	47352829	47352929	3587319	0	-	0.54	(0.523,0.58]	chr7	346030	61	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.90222	5.207345	5.51247	0.0230387	0.0125132	0.102982	0.0765738
chr2	152439076	152439176	926502	0	+	0.4	(0.39,0.419]	chr2	103058	1030	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	4	574	2	5.09955	5.2073149999999995	5.31508	0.00104907	1.93465e-5	0.0194601	8.23407e-4
chr10	96677508	96677608	4741357	0	-	0.52	(0.485,0.523]	chr10	452535	80	INTRON	INTRON	PIK3AP1	ENSG00000155629.15	ENST00000339364.10:ENST00000468783.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	4.71964	5.207205	5.69477	0.0718646	0.00203227	0.168159	0.0232814
chr2	111935564	111935664	875842	0	+	0.44	(0.419,0.45]	chr2	98890	52	INTRON	INTRON	MERTK	ENSG00000153208.18	ENST00000295408.9:ENST00000421804.6:ENST00000409780.5:ENST00000439966.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	197	2	4.39601	5.207175	6.01834	0.015582500000000001	3.37815e-4	0.0849828	0.00662093
chr20	44360042	44360142	7482508	0	+	0.43	(0.419,0.45]	chr20	779618	38	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5	protein_coding	protein_coding	protein_coding	protein_coding	2	176	2	3.68393	5.20717	6.73041	0.00486702	0.00228723	0.0456282	0.0253251
chr10	133348889	133348989	4783423	0	-	0.61	(0.58,1]	chr10	457516	27	INTRON	INTRON	ENSG00000226699	ENSG00000226699.1	ENST00000452591.1	lncRNA	lncRNA	lncRNA	lncRNA	0	61	2	4.58025	5.207000000000001	5.83375	0.0172566	0.00751249	0.0923809	0.0576451
chr10	102116525	102116623	4752414	0	-	0.428571	(0.419,0.45]	chr10	454306	17	INTRON	INTRON	LDB1	ENSG00000198728.11	ENST00000673968.1:ENST00000425280.2	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.78575	5.2069	5.62805	0.0280406	0.0224633	0.113651	0.108193
chr6	157451030	157451130	3054540	0	+	0.48	(0.45,0.485]	chr6	297167	684	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	1	125	2	4.24796	5.206735	6.16551	0.00879664	0.00132616	0.0630845	0.0173248
chr21	34993448	34993548	7656886	0	-	0.45	(0.419,0.45]	chr21	801067	1001	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000482318.5:ENST00000455571.5:ENST00000475045.6:ENST00000416754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	72	2	4.29342	5.20666	6.1199	0.0526662	0.0132894	0.167062	0.0787251
chr18	10991155	10991255	7118348	0	-	0.31	(0.29,0.33]	chr18	724484	111	INTRON	INTRON	PIEZO2	ENSG00000154864.14	ENST00000302079.10:ENST00000674853.1:ENST00000383408.7:ENST00000503781.7:ENST00000580640.5:ENST00000582913.5:ENST00000686869.1:ENST00000688929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	58	2	4.89341	5.206565	5.51972	0.0208628	0.0135896	0.0991037	0.0811697
chr1	121548170	121548269	228415	0	+	0.40404	(0.39,0.419]	chr1	25128	94	INTRON	INTRON	EMBP1	ENSG00000231752.7	ENST00000622787.4:ENST00000648011.2:ENST00000618253.1:ENST00000692042.1:ENST00000458200.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	57	2	5.14823	5.20637	5.26451	0.0501234	0.00800901	0.147892	0.0580954
chr16	16039087	16039186	6406900	0	+	0.414141	(0.39,0.419]	chr16	633041	21	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	57	2	5.14823	5.20637	5.26451	0.0501234	0.00800901	0.147892	0.0580954
chr16	81539383	81539483	6508687	0	+	0.55	(0.523,0.58]	chr16	645911	435	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.68785	5.20636	5.72487	0.0194172	0.0163679	0.0994526	0.0875379
chr18	13443862	13443962	7025014	0	+	0.54	(0.523,0.58]	chr18	717581	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000610087.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	61	2	4.68785	5.20636	5.72487	0.0194172	0.0163679	0.0994526	0.0875379
chr6	24333397	24333497	3110083	0	-	0.36	(0.33,0.36]	chr6	301440	310	INTRON	INTRON	DCDC2	ENSG00000146038.12	ENST00000378454.8	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	4.8729	5.20628	5.53966	0.0251076	0.0164782	0.107672	0.091341
chr21	34839300	34839400	7655337	0	-	0.46	(0.45,0.485]	chr21	801030	43	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000469087.1:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	140	2	4.87037	5.2061150000000005	5.54186	0.0243502	2.29543e-4	0.106588	0.00498593
chr6	15300944	15301044	2857056	0	+	0.39	(0.36,0.39]	chr6	279178	516	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	130	2	4.33287	5.206045	6.07922	0.0122748	0.00126236	0.0755611	0.0167512
chr1	168331239	168331339	269234	0	+	0.45	(0.419,0.45]	chr1	31665	132	INTRON	INTRON	ENSG00000227722	ENSG00000227722.2	ENST00000636624.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	65	2	4.56048	5.20584	5.8512	0.0337332	0.0201381	0.133139	0.0973365
chr16	8682359	8682458	6381213	0	+	0.414141	(0.39,0.419]	chr16	631145	73	INTRON	INTRON	ABAT	ENSG00000183044.12	ENST00000564714.5:ENST00000268251.13:ENST00000563992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	142	2	4.77582	5.205835	5.63585	0.025023	3.82748e-4	0.10758	0.00724619
chr11	71137723	71137823	5065677	0	-	0.52	(0.485,0.523]	chr11	492790	183	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.8987	5.2058	5.5129	0.0229047	0.0129327	0.102982	0.0778105
chr18	34710645	34710745	7042433	0	+	0.39	(0.36,0.39]	chr18	719135	2	SS5_PROX	SS5_PROX:INTRON	DTNA	ENSG00000134769.23	ENST00000682923.1:ENST00000596745.5:ENST00000283365.14:ENST00000315456.10:ENST00000684266.1:ENST00000598774.6:ENST00000683379.1:ENST00000683092.1:ENST00000684359.1:ENST00000679936.1:ENST00000682406.1:ENST00000682483.1:ENST00000590412.5:ENST00000680366.1:ENST00000679372.1:ENST00000684560.1:ENST00000681470.1:ENST00000684734.1:ENST00000590598.5:ENST00000683370.1:ENST00000591816.6:ENST00000684610.1:ENST00000588125.5:ENST00000683705.1:ENST00000598334.5:ENST00000399121.9:ENST00000554864.7:ENST00000588684.5:ENST00000595022.5:ENST00000684377.1:ENST00000682581.1:ENST00000598142.5:ENST00000585446.1:ENST00000681241.1:ENST00000680346.1:ENST00000348997.9:ENST00000680767.2:ENST00000680822.1:ENST00000681274.1:ENST00000597599.5:ENST00000588949.6:ENST00000444659.6:ENST00000679796.1:ENST00000681065.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	5.04949	5.2058	5.36211	0.0563927	0.00643924	0.154188	0.0503748
chr19	1166697	1166797	7305719	0	-	0.52	(0.485,0.523]	chr19	753054	117	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5:ENST00000587655.2	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.8987	5.2058	5.5129	0.0229047	0.0129327	0.102982	0.0778105
chr8	122828306	122828406	3910127	0	+	0.49	(0.485,0.523]	chr8	373483	119	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6	protein_coding	protein_coding	protein_coding	protein_coding	0	72	2	4.23628	5.2052700000000005	6.17426	0.045492200000000003	0.00754939	0.154539	0.0578091
chr10	45856193	45856293	4678131	0	-	0.58	(0.523,0.58]	chr10	446183	9	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000610690.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	0	56	2	4.96197	5.20521	5.44845	0.0521137	0.00361636	0.148503	0.0342681
chr1	51872294	51872394	482716	0	-	0.31	(0.29,0.33]	chr1	57198	95	INTRON	INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000539524.5:ENST00000352171.12:ENST00000491410.1:ENST00000468722.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	123	2	4.11338	5.20516	6.29694	0.00541881	0.00180446	0.048574	0.0215053
chrY	12769771	12769870	8137380	0	+	0.464646	(0.45,0.485]	chrY	847935	88	INTRON	INTRON	USP9Y	ENSG00000114374.13	ENST00000651177.1:ENST00000338981.7:ENST00000426564.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	65	2	4.50852	5.205095	5.90167	0.0302873	0.0137135	0.126768	0.0799457
chr16	75085831	75085930	6492779	0	+	0.414141	(0.39,0.419]	chr16	645349	8	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.04815	5.20485	5.36155	0.0572698	0.00648185	0.154343	0.0503748
chr2	113975109	113975208	882063	0	+	0.40404	(0.39,0.419]	chr2	99838	40	INTRON	INTRON	LINC01191	ENSG00000234199.3	ENST00000663402.1	lncRNA	lncRNA	lncRNA	lncRNA	0	57	2	5.04815	5.20485	5.36155	0.0572698	0.00648185	0.154343	0.0503748
chr16	85398232	85398332	6517053	0	+	0.52	(0.485,0.523]	chr16	646391	389	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.68434	5.20482	5.7253	0.0200045	0.0162644	0.100864	0.0873195
chr6	158305281	158305380	3061571	0	+	0.40404	(0.39,0.419]	chr6	297579	221	INTRON	INTRON	TULP4:ENSG00000274023	ENSG00000130338.13:ENSG00000274023.1	ENST00000620026.1:ENST00000432358.1:ENST00000619713.1	protein_coding	lncRNA	protein_coding:lncRNA	lncRNA:processed_transcript	1	129	2	4.05528	5.2047349999999994	6.35419	0.0079671	0.00258839	0.0596361	0.027634
chr12	120013441	120013540	5338378	0	+	0.555556	(0.523,0.58]	chr12	521140	130	INTRON	INTRON	BICDL1	ENSG00000135127.12	ENST00000548673.6:ENST00000397558.6:ENST00000546420.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	5.14602	5.20467	5.26332	0.0337698	0.00734367	0.124319	0.0550721
chr17	64522895	64522995	6783209	0	+	0.4	(0.39,0.419]	chr17	684147	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CEP95	ENSG00000258890.8	ENST00000556440.7:ENST00000553956.6:ENST00000577960.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	5.19579	5.204615	5.21344	0.0469937	0.00893514	0.143232	0.0620271
chr2	160465427	160465527	1293205	0	-	0.4	(0.39,0.419]	chr2	138809	326	INTRON	INTRON	RBMS1	ENSG00000153250.21	ENST00000348849.8:ENST00000474820.5:ENST00000491781.5:ENST00000477486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	57	2	5.19579	5.204615	5.21344	0.0469937	0.00893514	0.143232	0.0620271
chr17	40150383	40150482	6732958	0	+	0.474747	(0.45,0.485]	chr17	677136	84	INTRON	INTRON	CASC3	ENSG00000108349.17	ENST00000418132.7:ENST00000264645.12:ENST00000581849.1:ENST00000584997.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	337	2	5.07436	5.2045	5.33464	0.0013319	5.71193e-5	0.0222979	0.00180869
chr16	85397033	85397133	6517041	0	+	0.64	(0.58,1]	chr16	646391	377	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.89007	5.2041	5.51813	0.013519	0.00872525	0.0792526	0.0612699
chr2	666727	666825	1079812	0	-	0.591837	(0.58,1]	chr2	117536	30	UTR3	UTR3:EXON_MRNA	TMEM18	ENSG00000151353.15	ENST00000281017.8	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.94882	5.2037700000000005	5.45872	0.0354433	0.00211999	0.127188	0.0239744
chr1	53273239	53273339	486285	0	-	0.5	(0.485,0.523]	chr1	57911	7	EXON_MRNA	EXON_MRNA:INTRON	LRP8	ENSG00000157193.18	ENST00000306052.12:ENST00000661457.1:ENST00000668448.1:ENST00000667377.1:ENST00000658277.1:ENST00000662198.1:ENST00000657895.1:ENST00000668071.1:ENST00000480045.6:ENST00000653217.1:ENST00000669432.1:ENST00000465675.6:ENST00000371454.6:ENST00000662604.1:ENST00000354412.7:ENST00000658404.1:ENST00000668991.1:ENST00000656486.1:ENST00000347547.7:ENST00000655704.1:ENST00000659993.1:ENST00000475501.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	56	2	4.96239	5.20364	5.44489	0.0518747	0.00377098	0.148503	0.0353672
chr6	159711430	159711530	3300580	0	-	0.5	(0.485,0.523]	chr6	319519	182	INTRON	INTRON	SOD2	ENSG00000112096.19	ENST00000546087.5:ENST00000545162.5:ENST00000535561.5:ENST00000537657.5:ENST00000401980.3	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.96239	5.20364	5.44489	0.0518747	0.00377098	0.148503	0.0353672
chr8	127950134	127950234	3919361	0	+	0.5	(0.485,0.523]	chr8	374241	68	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1	lncRNA	lncRNA	lncRNA	lncRNA	0	56	2	4.96239	5.20364	5.44489	0.0518747	0.00377098	0.148503	0.0353672
chr2	240614890	240614990	1075088	0	+	0.28	[0,0.29]	chr2	116637	75	INTRON	INTRON	CAPN10:GPR35	ENSG00000142330.20:ENSG00000178623.13	ENST00000270364.11:ENST00000319838.10:ENST00000403859.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.94223	5.20336	5.46449	0.0379936	0.00299691	0.131324	0.030427
chr8	38774387	38774487	3802299	0	+	0.28	[0,0.29]	chr8	365828	166	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	4.94223	5.20336	5.46449	0.0379936	0.00299691	0.131324	0.030427
chr2	3293405	3293504	1081041	0	-	0.59596	(0.58,1]	chr2	117633	107	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	54	2	5.14497	5.203175	5.26138	0.021217	0.00474658	0.0996078	0.0413976
chr5	301880	301980	2377941	0	+	0.57	(0.523,0.58]	chr5	237467	251	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	123	2	3.98894	5.203135	6.41733	0.00490887	0.00237791	0.0457614	0.026
chr1	44241116	44241215	459582	0	-	0.515152	(0.485,0.523]	chr1	55299	84	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	56	2	5.14248	5.203115	5.26375	0.0335928	0.00761903	0.124319	0.0561937
chr1	211300968	211301067	333539	0	+	0.50505	(0.485,0.523]	chr1	37472	49	INTRON	INTRON	RCOR3	ENSG00000117625.14	ENST00000367006.8:ENST00000419091.7:ENST00000452621.6:ENST00000528926.5:ENST00000367005.8:ENST00000534460.5:ENST00000529763.5:ENST00000485186.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	5.14248	5.203115	5.26375	0.0335928	0.00761903	0.124319	0.0561937
chrX	2383859	2383959	7967682	0	-	0.51	(0.485,0.523]	chrX	834355	455	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	5.14248	5.203115	5.26375	0.0335928	0.00761903	0.124319	0.0561937
chr16	81523986	81524086	6508533	0	+	0.51	(0.485,0.523]	chr16	645911	281	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	128	2	3.74509	5.20298	6.66087	0.0045454	0.00309962	0.0401487	0.0355173
chr5	1328402	1328500	2609099	0	-	0.520408	(0.485,0.523]	chr5	259719	21	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	447	2	4.86455	5.202965000000001	5.54138	0.00176802	5.55804e-6	0.0261429	3.40678e-4
chr12	776448	776548	5148864	0	+	0.54	(0.523,0.58]	chr12	500570	218	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	4.5249	5.2028099999999995	5.88072	0.0266135	0.0126258	0.118113	0.0761905
chr16	84777800	84777899	6514622	0	+	0.565657	(0.523,0.58]	chr16	646345	22	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569925.1:ENST00000567526.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	64	2	4.5249	5.2028099999999995	5.88072	0.0266135	0.0126258	0.118113	0.0761905
chr1	153742466	153742566	246916	0	+	0.39	(0.36,0.39]	chr1	28262	7	INTRON	INTRON	INTS3	ENSG00000143624.14	ENST00000318967.7:ENST00000435409.6:ENST00000481797.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	58	2	4.82572	5.2026	5.57948	0.0751666	0.00393844	0.172839	0.0367306
chr12	54326579	54326678	5236931	0	+	0.454545	(0.45,0.485]	chr12	509133	5	INTRON	INTRON	COPZ1	ENSG00000111481.10	ENST00000552848.5:ENST00000548076.5:ENST00000553009.5:ENST00000549043.5:ENST00000262061.7:ENST00000552218.5:ENST00000551962.5:ENST00000550171.5:ENST00000455864.6:ENST00000552362.5:ENST00000553231.5:ENST00000550027.5:ENST00000551412.5:ENST00000549116.5:ENST00000551779.5:ENST00000548281.5:ENST00000548753.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	359	2	4.99153	5.202045	5.41256	6.8012e-4	1.6063e-4	0.015338	0.00387435
chr1	230185190	230185290	360599	0	+	0.45	(0.419,0.45]	chr1	40633	65	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	5.04004	5.201995	5.36395	0.0407485	0.0137308	0.135868	0.0814223
chr20	3534152	3534252	7420193	0	+	0.39	(0.36,0.39]	chr20	772906	623	INTRON	INTRON	ATRN	ENSG00000088812.18	ENST00000262919.10:ENST00000446916.2	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	4.48559	5.201935000000001	5.91828	0.036329	0.0158902	0.139793	0.0859576
chr22	24041473	24041573	7694750	0	+	0.49	(0.485,0.523]	chr22	805393	2	SS5_PROX	SS5_PROX:INTRON	CABIN1	ENSG00000099991.18	ENST00000454754.5:ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000445422.5:ENST00000398319.6	protein_coding	protein_coding	protein_coding	protein_coding	1	127	2	4.58284	5.2018249999999995	5.82081	0.0138807	4.69507e-4	0.0804838	0.00833265
chr2	99381561	99381658	858034	0	+	0.340206	(0.33,0.36]	chr2	97201	18	INTRON	INTRON	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11	protein_coding	protein_coding	protein_coding	protein_coding	1	127	2	4.28923	5.20174	6.11425	0.00993822	0.0013058	0.0672261	0.0171747
chr9	36339158	36339257	4299357	0	-	0.343434	(0.33,0.36]	chr9	411389	29	UTR3	UTR3:EXON_MRNA	RNF38	ENSG00000137075.18	ENST00000353739.8:ENST00000259605.11:ENST00000377885.6:ENST00000357058.7:ENST00000350199.8:ENST00000611646.4	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.77355	5.201695	5.62984	0.0735809	0.00313405	0.17026	0.0312116
chr6	154458749	154458849	3297030	0	-	0.4	(0.39,0.419]	chr6	319119	81	INTRON	INTRON	CNKSR3	ENSG00000153721.19	ENST00000607772.6:ENST00000479339.5	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.82439	5.201655000000001	5.57892	0.0762206	0.00396694	0.174484	0.0368027
chr15	64342985	64343085	6300638	0	-	0.41	(0.39,0.419]	chr15	620883	3	SS3_PROX	SS3_PROX:INTRON	CSNK1G1:ENSG00000259316	ENSG00000169118.18:ENSG00000259316.12	ENST00000303052.13:ENST00000607537.6:ENST00000634654.1:ENST00000634811.1:ENST00000606793.3:ENST00000634251.1:ENST00000634847.3:ENST00000635529.1:ENST00000634318.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2:ENST00000635413.1:ENST00000634538.1:ENST00000635320.1:ENST00000558783.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	57	2	4.99538	5.20155	5.40772	0.0613573	0.00585126	0.158506	0.0474117
chr17	242833	242932	6820698	0	-	0.393939	(0.39,0.419]	chr17	689558	84	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000570893.5:ENST00000576001.5:ENST00000570954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	4.99538	5.20155	5.40772	0.0613573	0.00585126	0.158506	0.0474117
chr10	89640402	89640502	4729193	0	-	0.39	(0.36,0.39]	chr10	451264	134	INTRON	INTRON	PANK1	ENSG00000152782.18	ENST00000307534.10:ENST00000342512.3:ENST00000322191.10:ENST00000488482.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	156	2	3.75935	5.20151	6.64367	0.0168929	2.6343e-4	0.0888269	0.00553857
chr2	216098722	216098822	1023227	0	+	0.53	(0.523,0.58]	chr2	111530	21	INTRON	INTRON	TMEM169	ENSG00000163449.11	ENST00000454545.5:ENST00000433112.5:ENST00000295658.8:ENST00000437356.7:ENST00000406027.2:ENST00000455479.5	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	4.43597	5.2013549999999995	5.96674	0.0313935	0.0109075	0.127822	0.0707085
chr20	49636899	49636959	7575394	0	-	0.4	(0.39,0.419]	chr20	791488	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	5.16048	5.20115	5.24182	0.0441194	0.00999413	0.140174	0.0667545
chr13	113613348	113613447	5659134	0	+	0.40404	(0.39,0.419]	chr13	555781	19	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	158	2	3.46347	5.2011	6.93873	0.0275016	1.16947e-4	0.112782	0.00308693
chr15	82845265	82845364	6340477	0	-	0.444444	(0.419,0.45]	chr15	625077	85	UTR3	UTR3:EXON_MRNA	HOMER2	ENSG00000103942.13	ENST00000558090.2	protein_coding	protein_coding	protein_coding	protein_coding	1	134	2	3.77132	5.20101	6.6307	0.00576404	0.00544312	0.0500197	0.0454065
chr20	36769794	36769890	7556213	0	-	0.302083	(0.29,0.33]	chr20	789054	14	INTRON	INTRON	DSN1	ENSG00000149636.16	ENST00000426836.5:ENST00000373734.8:ENST00000480153.5:ENST00000473615.5:ENST00000373750.9:ENST00000448110.6:ENST00000373740.7:ENST00000447406.1:ENST00000438549.5:ENST00000492703.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	57	2	4.79099	5.2009050000000006	5.61082	0.061706	0.00264971	0.158854	0.027979
chr3	134196574	134196673	1919787	0	-	0.363636	(0.36,0.39]	chr3	195278	10	INTRON	INTRON	RYK	ENSG00000163785.13	ENST00000623711.4:ENST00000460933.5:ENST00000620660.4	protein_coding	protein_coding	protein_coding	protein_coding	2	359	2	5.18695	5.200875	5.2148	0.00130738	1.09223e-4	0.0220198	0.00293076
chr2	171022173	171022272	1312781	0	-	0.343434	(0.33,0.36]	chr2	140568	69	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	4.89468	5.20082	5.50696	0.0629186	0.00418696	0.160778	0.0379935
chr1	120051183	120051283	572622	0	-	0.43	(0.419,0.45]	chr1	65741	3	SS5_PROX	SS5_PROX:INTRON	NOTCH2	ENSG00000134250.21	ENST00000256646.7:ENST00000479412.2:ENST00000652302.1:ENST00000652264.1:ENST00000651371.1:ENST00000652737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	59	2	4.91849	5.200795	5.4831	0.0345118	0.0174488	0.126025	0.0928044
chr2	233139441	233139541	1058009	0	+	0.42	(0.419,0.45]	chr2	115076	2	SS3_PROX	SS3_PROX:INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000451407.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	59	2	4.91849	5.200795	5.4831	0.0345118	0.0174488	0.126025	0.0928044
chr7	94512401	94512500	3418164	0	+	0.393939	(0.39,0.419]	chr7	330224	18	INTRON	INTRON	CASD1	ENSG00000127995.17	ENST00000447923.5:ENST00000297273.9:ENST00000443644.1:ENST00000417387.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	58	2	4.98886	5.200699999999999	5.41254	0.0347088	0.0142222	0.12648	0.0833845
chr22	33914699	33914799	7802816	0	-	0.46	(0.45,0.485]	chr22	817661	256	INTRON	INTRON	LARGE1	ENSG00000133424.22	ENST00000397394.8:ENST00000413114.6:ENST00000676070.1:ENST00000674543.1:ENST00000676370.1:ENST00000354992.7:ENST00000402320.6:ENST00000674789.1:ENST00000675277.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	5.1123	5.20038	5.28846	0.0458344	0.00612862	0.142336	0.0489549
chr1	44226725	44226825	459435	0	-	0.38	(0.36,0.39]	chr1	55285	47	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	131	2	4.42628	5.200115	5.97395	0.0145438	9.85947e-4	0.0823572	0.0140716
chr17	37522040	37522139	6893405	0	-	0.353535	(0.33,0.36]	chr17	700004	10	INTRON	INTRON	SYNRG	ENSG00000275066.5	ENST00000612223.5:ENST00000621136.4:ENST00000616179.4:ENST00000614941.4:ENST00000619541.4:ENST00000622045.4:ENST00000619914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	57	2	5.05937	5.200095	5.34082	0.0338211	0.0112642	0.124319	0.071709
chr6	24207300	24207400	3108815	0	-	0.31	(0.29,0.33]	chr6	301412	18	INTRON	INTRON	DCDC2	ENSG00000146038.12	ENST00000378454.8	protein_coding	protein_coding	protein_coding	protein_coding	1	161	2	3.05751	5.200095	7.34268	0.0226356	7.01314e-4	0.108193	0.0156107
chr16	78990011	78990111	6504319	0	+	0.48	(0.45,0.485]	chr16	645717	2097	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	4.83755	5.19979	5.56203	0.06646	0.00322991	0.162385	0.0319521
chr12	420525	420624	5148390	0	+	0.464646	(0.45,0.485]	chr12	500517	15	INTRON	INTRON	CCDC77	ENSG00000120647.10	ENST00000540180.5:ENST00000422000.5:ENST00000543504.5:ENST00000540344.5:ENST00000412006.6:ENST00000239830.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	4.5725	5.1997	5.8269	0.0926859	0.00167585	0.188571	0.0203806
chr6	81745129	81745229	3188312	0	-	0.44	(0.419,0.45]	chr6	309315	2497	INTRON	INTRON	TENT5A	ENSG00000112773.16	ENST00000412306.1	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	4.63955	5.19965	5.75975	0.0293406	0.0231013	0.125102	0.102982
chr19	45622231	45622325	7388917	0	-	0.457447	(0.45,0.485]	chr19	767274	2	INTRON	INTRON	EML2	ENSG00000125746.18	ENST00000589876.5:ENST00000587152.6:ENST00000245925.8:ENST00000586195.5:ENST00000588308.5:ENST00000536630.5:ENST00000590819.5:ENST00000399594.7:ENST00000590575.5:ENST00000588272.1:ENST00000588000.5:ENST00000588610.5:ENST00000588496.5:ENST00000586902.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	56	2	5.16149	5.19942	5.23735	0.0427653	0.00687715	0.13762	0.0526888
chr2	98489071	98489171	855802	0	+	0.46	(0.45,0.485]	chr2	96866	436	INTRON	INTRON	INPP4A	ENSG00000040933.16	ENST00000409016.8:ENST00000409851.8:ENST00000074304.9:ENST00000409463.5:ENST00000409540.7	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.16149	5.19942	5.23735	0.0427653	0.00687715	0.13762	0.0526888
chr21	45477145	45477227	7631042	0	+	0.47561	(0.45,0.485]	chr21	797687	3	SS3_PROX	SS3_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.16149	5.19942	5.23735	0.0427653	0.00687715	0.13762	0.0526888
chr15	76338714	76338814	6156242	0	+	0.5	(0.485,0.523]	chr15	605683	2	SS5_PROX	SS5_PROX:INTRON	ISL2	ENSG00000159556.10	ENST00000290759.9:ENST00000558656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	145	2	5.04678	5.199225	5.35167	0.0294163	1.18221e-4	0.116079	0.00311099
chr16	954152	954252	6531575	0	-	0.52	(0.485,0.523]	chr16	648706	4	SS5_PROX	SS5_PROX:INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1:ENST00000566609.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	57	2	4.96361	5.19907	5.43453	0.0258944	0.0112713	0.109555	0.071709
chr22	21606256	21606356	7690453	0	+	0.52	(0.485,0.523]	chr22	804752	129	INTRON	INTRON	UBE2L3	ENSG00000185651.16	ENST00000458578.6:ENST00000545681.2:ENST00000696046.1:ENST00000342192.9:ENST00000496722.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	57	2	4.96361	5.19907	5.43453	0.0258944	0.0112713	0.109555	0.071709
chr17	77350699	77350799	6803866	0	+	0.63	(0.58,1]	chr17	686742	265	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	373	2	5.16341	5.199065	5.23472	4.15489e-4	8.69672e-6	0.0117067	4.64118e-4
chr17	6759567	6759661	6675010	0	+	0.574468	(0.523,0.58]	chr17	669259	2	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XAF1	ENSG00000132530.17	ENST00000575369.5:ENST00000574394.5:ENST00000346752.8:ENST00000361842.8:ENST00000572546.5:ENST00000576724.5:ENST00000571217.5:ENST00000574907.5:ENST00000575147.5:ENST00000571135.5:ENST00000574962.5:ENST00000571673.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	62	2	4.60868	5.19896	5.78924	0.0226775	0.0147166	0.108193	0.0826843
chr8	22558292	22558392	3771875	0	+	0.57	(0.523,0.58]	chr8	362925	1	SS5_PROX	SS5_PROX:INTRON	SORBS3	ENSG00000120896.14	ENST00000240123.12:ENST00000517500.5:ENST00000517535.5:ENST00000523402.5:ENST00000520563.3:ENST00000524057.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	62	2	4.60868	5.19896	5.78924	0.0226775	0.0147166	0.108193	0.0826843
chr12	64683886	64683986	5251099	0	+	0.47	(0.45,0.485]	chr12	511993	609	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	5.01267	5.19885	5.38503	0.0308908	0.011221	0.119556	0.071709
chr3	129395052	129395147	1911568	0	-	0.463158	(0.45,0.485]	chr3	194158	9	INTRON	INTRON	RPL32P3	ENSG00000251474.7	ENST00000510078.5:ENST00000507287.5:ENST00000687239.1:ENST00000514355.5:ENST00000507238.5:ENST00000515866.5:ENST00000499631.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	57	2	5.01267	5.19885	5.38503	0.0308908	0.011221	0.119556	0.071709
chr17	72529822	72529922	6963605	0	-	0.33	(0.29,0.33]	chr17	710377	29	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	3	212	2	4.03485	5.19853	6.36221	0.00480225	3.29224e-4	0.0452644	0.00648432
chr15	51082362	51082462	6105399	0	+	0.42	(0.419,0.45]	chr15	601269	443	INTRON	INTRON	MIR4713HG	ENSG00000259240.1	ENST00000559909.1	lncRNA	lncRNA	lncRNA	lncRNA	0	57	2	5.09133	5.198405	5.30548	0.0586308	0.00792071	0.155565	0.057762
chr18	74622483	74622583	7089496	0	+	0.42	(0.419,0.45]	chr18	722412	242	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000582337.5	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	5.09133	5.198405	5.30548	0.0586308	0.00792071	0.155565	0.057762
chr16	81644957	81645057	6509747	0	+	0.53	(0.523,0.58]	chr16	645926	229	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.08882	5.198385	5.30795	0.0315825	0.00834774	0.120781	0.0598672
chr16	85622162	85622261	6519299	0	+	0.555556	(0.523,0.58]	chr16	646407	84	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1:ENST00000405402.6:ENST00000411612.5:ENST00000253458.12:ENST00000393243.5	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.08882	5.198385	5.30795	0.0315825	0.00834774	0.120781	0.0598672
chr5	150509224	150509324	2565103	0	+	0.55	(0.523,0.58]	chr5	254953	6	INTRON	INTRON	NDST1	ENSG00000070614.15	ENST00000522491.1:ENST00000519157.1:ENST00000524161.1:ENST00000523767.5:ENST00000518299.1:ENST00000518346.1:ENST00000261797.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	5.08882	5.198385	5.30795	0.0315825	0.00834774	0.120781	0.0598672
chr13	33246373	33246473	5685061	0	-	0.43	(0.419,0.45]	chr13	558196	405	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.1405	5.1983250000000005	5.25615	0.0550015	0.00879729	0.153337	0.0615125
chr15	71867802	71867902	6314569	0	-	0.43	(0.419,0.45]	chr15	622586	48	INTRON	INTRON	MYO9A	ENSG00000066933.16	ENST00000356056.10:ENST00000561618.5:ENST00000564571.5:ENST00000444904.5	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	5.1405	5.1983250000000005	5.25615	0.0550015	0.00879729	0.153337	0.0615125
chr6	28282418	28282511	2888962	0	+	0.44086	(0.419,0.45]	chr6	281257	1	INTRON	INTRON	PGBD1	ENSG00000137338.6	ENST00000259883.3:ENST00000682144.1	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	5.1405	5.1983250000000005	5.25615	0.0550015	0.00879729	0.153337	0.0615125
chr8	118063209	118063309	4049255	0	-	0.31	(0.29,0.33]	chr8	386022	461	INTRON	INTRON	EXT1	ENSG00000182197.13	ENST00000378204.7:ENST00000437196.1:ENST00000436216.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	4.91217	5.19824	5.48431	0.0522244	0.00360762	0.148503	0.0342681
chr3	172220274	172220374	1629279	0	+	0.32	(0.29,0.33]	chr3	170570	331	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	146	2	3.70142	5.1979750000000005	6.69453	0.0148734	1.39595e-4	0.0833515	0.00349292
chr7	21445911	21446010	3327424	0	+	0.323232	(0.29,0.33]	chr7	322165	147	INTRON	INTRON	SP4	ENSG00000105866.15	ENST00000432066.2:ENST00000448246.1:ENST00000222584.8:ENST00000649633.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	128	2	3.72807	5.197925	6.66778	0.00487126	0.00269181	0.0420427	0.0329086
chr1	94421838	94421938	186885	0	+	0.37	(0.36,0.39]	chr1	20287	25	INTRON	INTRON	ABCD3	ENSG00000117528.14	ENST00000370214.9:ENST00000647998.2:ENST00000315713.5:ENST00000468860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	4.94194	5.197485	5.45303	0.064883	0.00525731	0.162218	0.044445
chr1	230122627	230122727	359973	0	+	0.37	(0.36,0.39]	chr1	40627	307	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	4.94194	5.197485	5.45303	0.064883	0.00525731	0.162218	0.044445
chr10	117319374	117319474	4770294	0	-	0.38	(0.36,0.39]	chr10	455976	4	SS3_PROX	SS3_PROX:INTRON	PDZD8	ENSG00000165650.12	ENST00000334464.7:ENST00000489491.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	128	2	4.12567	5.1974350000000005	6.2692	0.00897657	0.00215781	0.0637469	0.024213
chr2	11580203	11580303	720675	0	+	0.49	(0.485,0.523]	chr2	84133	1	SS3_PROX	SS3_PROX:INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000263834.9:ENST00000389825.7:ENST00000381483.6:ENST00000234142.9	protein_coding	protein_coding	protein_coding	protein_coding	3	202	2	3.84089	5.19731	6.55373	0.00378829	5.58513e-4	0.0396337	0.00944382
chr15	73685383	73685483	6150485	0	+	0.38	(0.36,0.39]	chr15	604911	3	SS5_PROX	SS5_PROX:INTRON	CD276	ENSG00000103855.18	ENST00000567189.5:ENST00000537340.6:ENST00000318424.9:ENST00000318443.10:ENST00000560786.6:ENST00000558689.5:ENST00000561213.5:ENST00000560928.5:ENST00000563584.5:ENST00000561416.5:ENST00000560995.5:ENST00000567582.5:ENST00000561260.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	61	2	4.72331	5.1972950000000004	5.67128	0.0236929	0.023302	0.111208	0.103669
chr19	47228546	47228646	7392367	0	-	0.7	(0.58,1]	chr19	768105	1	SS3_PROX	SS3_PROX:INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	2	280	2	4.78741	5.197275	5.60714	0.00115271	9.43422e-6	0.0205679	4.93382e-4
chr3	13057415	13057514	1689713	0	-	0.525253	(0.523,0.58]	chr3	176555	44	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	1	148	2	3.85203	5.197255	6.54248	0.0120823	1.90498e-4	0.0745767	0.0043642
chr4	75966222	75966322	2252775	0	-	0.39	(0.36,0.39]	chr4	227454	4	SS3_PROX	SS3_PROX:INTRON	SDAD1	ENSG00000198301.12	ENST00000395710.5:ENST00000356260.10:ENST00000395711.8:ENST00000513089.5:ENST00000507396.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	128	2	4.10321	5.197245000000001	6.29128	0.0086512	0.00228451	0.0623824	0.0252966
chr11	485645	485744	4784662	0	+	0.636364	(0.58,1]	chr11	457913	52	INTRON	INTRON	PTDSS2	ENSG00000174915.12	ENST00000532614.5:ENST00000308020.6:ENST00000531520.5:ENST00000526878.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	4.88945	5.19721	5.50497	0.0388928	0.00187297	0.131324	0.0219434
chr17	82315696	82315785	6988959	0	-	0.662921	(0.58,1]	chr17	714793	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CD7	ENSG00000173762.8	ENST00000584284.5:ENST00000312648.8:ENST00000583376.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.88945	5.19721	5.50497	0.0388928	0.00187297	0.131324	0.0219434
chr3	93956713	93956813	1853007	0	-	0.36	(0.33,0.36]	chr3	189045	276	INTRON	INTRON	PROS1	ENSG00000184500.16	ENST00000394236.9:ENST00000648381.1:ENST00000648853.1:ENST00000650591.1:ENST00000348974.5:ENST00000647936.1:ENST00000407433.6:ENST00000649103.1:ENST00000472684.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	135	2	4.67988	5.197134999999999	5.71439	0.0191308	4.49103e-4	0.0952349	0.00812682
chr16	32772091	32772190	6442268	0	+	0.474747	(0.45,0.485]	chr16	638922	6	INTRON	INTRON	HERC2P5	ENSG00000260644.6	ENST00000562687.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	0	56	2	5.00859	5.1970600000000005	5.38553	0.052901	0.00490471	0.14912	0.0422077
chr21	44158091	44158190	7627171	0	+	0.464646	(0.45,0.485]	chr21	797257	125	INTRON	INTRON	GATD3	ENSG00000160221.18	ENST00000644251.1:ENST00000645487.1:ENST00000646873.1:ENST00000449622.6:ENST00000642815.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	56	2	5.00859	5.1970600000000005	5.38553	0.052901	0.00490471	0.14912	0.0422077
chr4	113695959	113696059	2313778	0	-	0.47	(0.45,0.485]	chr4	232470	338	INTRON	INTRON	CAMK2D	ENSG00000145349.18	ENST00000683023.1:ENST00000296402.9:ENST00000511664.6:ENST00000394524.7:ENST00000342666.9:ENST00000514328.5:ENST00000515496.5:ENST00000394522.7:ENST00000505990.5:ENST00000379773.6:ENST00000508738.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	5.00859	5.1970600000000005	5.38553	0.052901	0.00490471	0.14912	0.0422077
chr8	130268441	130268541	4081878	0	-	0.48	(0.45,0.485]	chr8	388157	215	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000521075.5:ENST00000524367.5:ENST00000520927.5:ENST00000524299.1:ENST00000521426.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	56	2	5.00859	5.1970600000000005	5.38553	0.052901	0.00490471	0.14912	0.0422077
chr2	109582136	109582235	1245672	0	-	0.373737	(0.36,0.39]	chr2	134268	70	INTRON	INTRON	SEPTIN10	ENSG00000186522.15	ENST00000397712.7:ENST00000356688.8:ENST00000397714.6:ENST00000437928.5:ENST00000415095.5:ENST00000486678.6:ENST00000425498.1:ENST00000493445.5:ENST00000423520.5:ENST00000461295.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	5.10608	5.19693	5.28778	0.0407706	0.0111429	0.135868	0.071709
chr5	1054881	1054981	2608369	0	-	0.49	(0.485,0.523]	chr5	259538	10	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10:ENST00000634447.1	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.08528	5.1968250000000005	5.30837	0.0314138	0.0086528	0.12069	0.0612699
chr5	138159354	138159454	2768445	0	-	0.43	(0.419,0.45]	chr5	271499	4	SS5_PROX	SS5_PROX:INTRON	BRD8	ENSG00000112983.18	ENST00000254900.10:ENST00000402931.5:ENST00000230901.9:ENST00000454473.5:ENST00000418329.5:ENST00000441656.5:ENST00000472478.6:ENST00000411594.6:ENST00000512140.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	5.04043	5.1968	5.35317	0.0625897	0.00714797	0.160305	0.0541241
chr9	94925856	94925954	4189242	0	+	0.44898	(0.419,0.45]	chr9	398083	13	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000277198.6:ENST00000297979.9:ENST00000424143.5:ENST00000488186.5:ENST00000473778.5:ENST00000462125.5:ENST00000479161.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	5.04043	5.1968	5.35317	0.0625897	0.00714797	0.160305	0.0541241
chr9	129340180	129340276	4250339	0	+	0.447917	(0.419,0.45]	chr9	404662	9	INTRON	INTRON	LINC01503	ENSG00000233901.7	ENST00000427109.2:ENST00000654735.1:ENST00000654190.1:ENST00000657886.1:ENST00000661745.1:ENST00000436710.6:ENST00000660635.1:ENST00000657651.1:ENST00000665063.2:ENST00000667257.1:ENST00000690929.1:ENST00000654148.1:ENST00000444125.3:ENST00000666671.1:ENST00000660036.1:ENST00000657393.1:ENST00000659864.1	lncRNA	lncRNA	lncRNA	lncRNA	0	57	2	5.04043	5.1968	5.35317	0.0625897	0.00714797	0.160305	0.0541241
chr8	11782709	11782808	3760200	0	+	0.464646	(0.45,0.485]	chr8	361116	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NEIL2	ENSG00000154328.16	ENST00000436750.7:ENST00000455213.6:ENST00000403422.7:ENST00000284503.7:ENST00000528323.5:ENST00000528113.5:ENST00000524741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	56	2	5.18438	5.19672	5.20906	0.0399616	0.00773818	0.133954	0.0568726
chr2	46718039	46718139	786341	0	+	0.42	(0.419,0.45]	chr2	89915	182	INTRON	INTRON	SOCS5	ENSG00000171150.9	ENST00000306503.5:ENST00000394861.3	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	5.18804	5.19656	5.20508	0.051668	0.00979452	0.148503	0.0664239
chr2	173957226	173957325	1319077	0	-	0.393939	(0.39,0.419]	chr2	140957	6	INTRON	INTRON	SP3	ENSG00000172845.18	ENST00000310015.12:ENST00000416195.1:ENST00000418194.7:ENST00000652005.2:ENST00000462904.1:ENST00000483084.1:ENST00000490182.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	4.9406	5.19653	5.45246	0.0658437	0.00529344	0.162385	0.044517
chr14	68946066	68946166	5999814	0	-	0.67	(0.58,1]	chr14	588755	82	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6:ENST00000683261.1:ENST00000553370.5:ENST00000682602.1:ENST00000553779.5:ENST00000556571.1:ENST00000553659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	5.08534	5.196405	5.30747	0.0196049	0.00549379	0.0955413	0.0454065
chr19	1289487	1289586	7186899	0	+	0.717172	(0.58,1]	chr19	731132	28	INTRON	INTRON	EFNA2	ENSG00000099617.4	ENST00000215368.4	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.08534	5.196405	5.30747	0.0196049	0.00549379	0.0955413	0.0454065
chr1	153921538	153921638	592627	0	-	0.48	(0.45,0.485]	chr1	68958	3	SS5_PROX	SS5_PROX:INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634401.1:ENST00000634791.1:ENST00000637331.1:ENST00000636008.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	124	2	4.22618	5.195845	6.16551	0.00879664	0.00140627	0.0630845	0.0180646
chr3	48426124	48426222	1766695	0	-	0.602041	(0.58,1]	chr3	182283	4	INTRON	INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	617	2	4.4649	5.19548	5.92606	8.07819e-5	1.35159e-5	0.00498873	6.38288e-4
chr19	940623	940723	7185252	0	+	0.6	(0.58,1]	chr19	730741	75	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	187	2	3.17001	5.195455	7.2209	0.00272556	4.00118e-4	0.028553	0.0114335
chr9	33859648	33859748	4140106	0	+	0.24	[0,0.29]	chr9	393785	287	INTRON	INTRON	UBE2R2	ENSG00000107341.5	ENST00000263228.4	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.04518	5.19533	5.34548	0.0197148	0.00813784	0.0958249	0.0588114
chr7	138508304	138508404	3502484	0	+	0.39	(0.36,0.39]	chr7	337502	35	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	131	2	4.44426	5.195320000000001	5.9463800000000004	0.0151971	9.39802e-4	0.084474	0.0135546
chr20	34920255	34920346	7463202	0	+	0.461538	(0.45,0.485]	chr20	776981	3	SS3_PROX	SS3_PROX:INTRON	ACSS2	ENSG00000131069.20	ENST00000481284.5:ENST00000475459.6:ENST00000477932.5:ENST00000480978.5:ENST00000360596.7:ENST00000253382.5:ENST00000476922.5:ENST00000493250.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	69	2	4.32491	5.1953	6.06569	0.0418883	0.0104281	0.149021	0.0687558
chr10	103837016	103837116	4758475	0	-	0.56	(0.523,0.58]	chr10	454819	353	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	1	148	2	3.86955	5.195285	6.52102	0.0117111	2.02818e-4	0.0737098	0.0045746
chr10	79164930	79165029	4533006	0	+	0.636364	(0.58,1]	chr10	432438	24	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	134	2	3.87867	5.195245	6.51182	0.00797934	9.48877e-5	0.0596361	0.00262417
chr17	14397871	14397971	6683515	0	+	0.47	(0.45,0.485]	chr17	670768	3	INTRON	INTRON	ENSG00000230647	ENSG00000230647.2	ENST00000436469.1:ENST00000655690.1	lncRNA	lncRNA	lncRNA	lncRNA	1	151	2	3.55856	5.195015	6.83147	0.0213798	1.05911e-4	0.100177	0.00286061
chr3	15442316	15442415	1417827	0	+	0.383838	(0.36,0.39]	chr3	152331	33	UTR3	UTR3:EXON_MRNA:INTRON	EAF1	ENSG00000144597.14	ENST00000396842.7:ENST00000617675.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	128	2	4.21215	5.19474	6.17733	0.0104543	0.00172878	0.0688771	0.0208639
chr8	22200434	22200525	3769785	0	+	0.527473	(0.523,0.58]	chr8	362645	7	INTRON	INTRON	BMP1	ENSG00000168487.20	ENST00000354870.5:ENST00000520970.5:ENST00000518913.5:ENST00000520626.6:ENST00000520982.5:ENST00000306385.10:ENST00000306349.13:ENST00000471755.5:ENST00000483364.5:ENST00000521385.5:ENST00000522332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	59	2	4.58058	5.194655	5.80873	0.0860403	0.00145893	0.181766	0.0184991
chr3	128495407	128495506	1563250	0	+	0.575758	(0.523,0.58]	chr3	165331	50	INTRON	INTRON	GATA2-AS1	ENSG00000244300.3	ENST00000464242.1:ENST00000468377.1:ENST00000669945.1	lncRNA	lncRNA	lncRNA	lncRNA	0	58	2	4.65157	5.19383	5.73609	0.0787008	0.0017613	0.175203	0.0211077
chr8	128039646	128039725	3920277	0	+	0.43038	(0.419,0.45]	chr8	374318	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	0	58	2	4.81671	5.19361	5.57051	0.08258	0.00441471	0.179396	0.0393688
chr10	76063382	76063482	4526807	0	+	0.45	(0.419,0.45]	chr10	432311	42	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	4.98767	5.193505	5.39934	0.0669167	0.00646489	0.16272	0.0503748
chr2	235721488	235721588	1064819	0	+	0.43	(0.419,0.45]	chr2	115681	27	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	4.98767	5.193505	5.39934	0.0669167	0.00646489	0.16272	0.0503748
chr3	132639956	132640056	1917110	0	-	0.43	(0.419,0.45]	chr3	194881	3	SS3_PROX	SS3_PROX:INTRON	ACAD11	ENSG00000240303.8	ENST00000496418.5:ENST00000264990.11:ENST00000485198.5:ENST00000469042.5:ENST00000481970.2:ENST00000489991.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	57	2	4.98767	5.193505	5.39934	0.0669167	0.00646489	0.16272	0.0503748
chr5	176588730	176588830	2596942	0	+	0.57	(0.523,0.58]	chr5	257748	3	SS3_PROX	SS3_PROX:INTRON	CDHR2	ENSG00000074276.11	ENST00000510636.5:ENST00000261944.10:ENST00000506348.1:ENST00000513031.5:ENST00000508085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	121	2	4.21238	5.193104999999999	6.17383	0.00760615	0.0013008	0.0579698	0.0171237
chr21	35297622	35297722	7659934	0	-	0.52	(0.485,0.523]	chr21	801082	2322	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000475045.6	protein_coding	protein_coding	protein_coding	protein_coding	0	68	2	4.33772	5.193035	6.04835	0.03818	0.00941539	0.140822	0.0653252
chr20	62960203	62960303	7508299	0	+	0.65	(0.58,1]	chr20	783181	3	SS3_PROX	SS3_PROX:INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	807	2	4.49155	5.192775	5.894	2.84092e-5	1.61605e-5	0.00300073	7.22217e-4
chr1	204081578	204081678	322135	0	+	0.58	(0.523,0.58]	chr1	36272	30	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1:ENST00000528591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	4.7629	5.192740000000001	5.62258	0.0193313	0.0167014	0.0954446	0.0917029
chr11	116953045	116953144	5132793	0	-	0.383838	(0.36,0.39]	chr11	498428	24	INTRON	INTRON	SIK3	ENSG00000160584.17	ENST00000445177.6:ENST00000375300.6:ENST00000446921.6:ENST00000415541.5:ENST00000413553.1:ENST00000497049.5:ENST00000485363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	62	2	4.64834	5.192725	5.73711	0.0272056	0.0210765	0.119337	0.0996078
chr11	18591171	18591270	4811671	0	+	0.454545	(0.45,0.485]	chr11	461226	18	INTRON	INTRON	SPTY2D1OS	ENSG00000247595.5	ENST00000636313.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	56	2	5.12938	5.19224	5.2551	0.0373953	0.00873194	0.130656	0.0612699
chr16	85377941	85378041	6516850	0	+	0.57	(0.523,0.58]	chr16	646391	186	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.83424	5.1921800000000005	5.55012	0.0217068	0.0144272	0.100615	0.0833845
chr2	87529214	87529314	847942	0	+	0.53	(0.523,0.58]	chr2	95749	78	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000642451.1:ENST00000644478.1:ENST00000409139.6:ENST00000644125.1:ENST00000643743.1:ENST00000643276.1:ENST00000409898.2:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000646636.1:ENST00000629257.1:ENST00000409054.2	lncRNA	lncRNA	lncRNA	lncRNA	0	60	2	4.50593	5.191915	5.8779	0.094303	0.00121652	0.188571	0.0162693
chr7	117208888	117208987	3454399	0	+	0.525253	(0.523,0.58]	chr7	334516	94	INTRON	INTRON	ST7	ENSG00000004866.22	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000446490.5:ENST00000422922.5:ENST00000432298.5:ENST00000393443.5:ENST00000393444.7:ENST00000393447.8:ENST00000490039.1:ENST00000485394.6:ENST00000465641.5:ENST00000543837.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	60	2	4.50593	5.191915	5.8779	0.094303	0.00121652	0.188571	0.0162693
chr1	174172150	174172250	278101	0	+	0.36	(0.33,0.36]	chr1	32619	121	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000635248.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	4.99985	5.191345	5.38284	0.0317908	0.0127452	0.121384	0.0773423
chr13	78648186	78648286	5734877	0	-	0.34	(0.33,0.36]	chr13	562366	28	INTRON	INTRON	OBI1	ENSG00000152193.8	ENST00000282003.7	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.99985	5.191345	5.38284	0.0317908	0.0127452	0.121384	0.0773423
chr18	69612491	69612591	7085300	0	+	0.57	(0.523,0.58]	chr18	722127	126	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.84569	5.19117	5.53665	0.0610722	0.00291382	0.158506	0.0298557
chr4	3363994	3364094	2005076	0	+	0.45	(0.419,0.45]	chr4	204663	206	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	60	2	4.62273	5.191045	5.75936	0.103601	0.00285253	0.197541	0.0294017
chr10	76073480	76073580	4526908	0	+	0.38	(0.36,0.39]	chr10	432311	143	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	4.885	5.190709999999999	5.49642	0.0697729	0.00476539	0.167185	0.0414441
chr2	72705707	72705807	1186997	0	-	0.38	(0.36,0.39]	chr2	128741	1297	INTRON	INTRON	EXOC6B	ENSG00000144036.16	ENST00000272427.11:ENST00000634650.1:ENST00000410104.1:ENST00000410112.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	4.885	5.190709999999999	5.49642	0.0697729	0.00476539	0.167185	0.0414441
chr10	79115217	79115317	4532507	0	+	0.52	(0.485,0.523]	chr10	432420	456	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.83072	5.1906300000000005	5.55054	0.0215787	0.0148956	0.100612	0.0847741
chr2	77444871	77444971	1202473	0	-	0.4	(0.39,0.419]	chr2	130007	6956	INTRON	INTRON	LRRTM4	ENSG00000176204.14	ENST00000409884.6:ENST00000409911.5:ENST00000409093.1	protein_coding	protein_coding	protein_coding	protein_coding	0	77	2	4.09132	5.190614999999999	6.28991	0.0689553	0.00887176	0.193274	0.0634853
chr5	168358941	168359040	2588390	0	+	0.353535	(0.33,0.36]	chr5	256651	418	INTRON	INTRON	WWC1	ENSG00000113645.15	ENST00000265293.9:ENST00000521089.5:ENST00000523043.5:ENST00000519859.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	4.73368	5.1903500000000005	5.64702	0.0216127	0.0212683	0.105648	0.0996805
chr5	140404968	140405068	2551341	0	+	0.44	(0.419,0.45]	chr5	253267	23	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000616482.4:ENST00000360839.7:ENST00000421134.5:ENST00000394723.7:ENST00000511151.5:ENST00000394722.7	protein_coding	protein_coding	protein_coding	protein_coding	1	158	2	3.61678	5.19026	6.76374	0.0229694	2.19456e-4	0.102982	0.00483494
chr1	43566797	43566896	107107	0	+	0.565657	(0.523,0.58]	chr1	13192	125	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	5.02927	5.1902550000000005	5.35124	0.0295772	0.0095202	0.116079	0.0650078
chr10	79157057	79157157	4532927	0	+	0.56	(0.523,0.58]	chr10	432432	169	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.02927	5.1902550000000005	5.35124	0.0295772	0.0095202	0.116079	0.0650078
chr17	77305943	77306043	6803410	0	+	0.57	(0.523,0.58]	chr17	686716	107	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	56	2	5.02927	5.1902550000000005	5.35124	0.0295772	0.0095202	0.116079	0.0650078
chr6	99413608	99413701	3208657	0	-	0.365591	(0.36,0.39]	chr6	311556	5	INTRON	INTRON	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5:ENST00000478777.5:ENST00000492294.5:ENST00000498075.1:ENST00000466057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	57	2	5.04893	5.189995	5.33106	0.0383628	0.0125348	0.131324	0.0765738
chr16	57377264	57377362	6466037	0	+	0.632653	(0.58,1]	chr16	641366	4	UTR5	UTR5:EXON_MRNA:INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1:ENST00000565912.1	protein_coding	protein_coding	protein_coding	protein_coding	1	112	2	4.23567	5.18997	6.14427	0.00407804	8.49275e-4	0.0413652	0.0126615
chr3	13021932	13022032	1689355	0	-	0.64	(0.58,1]	chr3	176539	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	1	112	2	4.26089	5.189769999999999	6.11865	0.00429384	7.87512e-4	0.042386	0.0120243
chr22	40088567	40088667	7726600	0	+	0.53	(0.523,0.58]	chr22	809581	426	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000441751.5:ENST00000402203.5	protein_coding	protein_coding	protein_coding	protein_coding	1	150	2	4.01837	5.189755	6.36114	0.00895679	3.21725e-4	0.0637469	0.0063695
chr16	85237865	85237965	6515447	0	+	0.56	(0.523,0.58]	chr16	646377	101	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	60	2	4.68785	5.18971	5.69157	0.0194172	0.0172851	0.0994526	0.0897247
chr2	3291009	3291109	1081017	0	-	0.51	(0.485,0.523]	chr2	117633	83	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	56	2	4.84611	5.189595000000001	5.53308	0.0608067	0.00304306	0.158506	0.0306636
chr5	73699573	73699673	2452426	0	+	0.5	(0.485,0.523]	chr5	244920	143	INTRON	INTRON	ARHGEF28	ENSG00000214944.10	ENST00000545377.5:ENST00000296794.10:ENST00000513042.7:ENST00000509848.5:ENST00000426542.6:ENST00000437974.5	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.84611	5.189595000000001	5.53308	0.0608067	0.00304306	0.158506	0.0306636
chr13	26254869	26254969	5551195	0	+	0.63	(0.58,1]	chr13	547915	1	SS5_PROX	SS5_PROX:INTRON	CDK8	ENSG00000132964.12	ENST00000536792.5:ENST00000381527.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	4.62403	5.189545000000001	5.75506	0.0578275	9.38062e-4	0.154343	0.0135546
chr5	60463381	60463481	2678790	0	-	0.42	(0.419,0.45]	chr5	264436	148	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000502484.6:ENST00000509355.5:ENST00000506510.6:ENST00000511382.1:ENST00000505507.6:ENST00000515835.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	60	2	4.78575	5.18945	5.59315	0.029494	0.0224633	0.116079	0.108193
chr6	138437390	138437490	3273512	0	-	0.33	(0.29,0.33]	chr6	316891	17	INTRON	INTRON	NHSL1	ENSG00000135540.12	ENST00000427025.6:ENST00000343505.10:ENST00000342260.9	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.02042	5.189444999999999	5.35847	0.0269557	0.0103902	0.112113	0.0682598
chr1	112706631	112706731	563038	0	-	0.67	(0.58,1]	chr1	64625	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RHOC	ENSG00000155366.17	ENST00000369633.6:ENST00000369642.7:ENST00000339083.12:ENST00000285735.6:ENST00000468093.5:ENST00000369638.6:ENST00000369637.5:ENST00000369636.6:ENST00000484280.6:ENST00000369632.6:ENST00000425265.6:ENST00000436685.6:ENST00000528831.5:ENST00000484054.3:ENST00000478447.1:ENST00000527563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	190	2	3.80005	5.189135	6.57822	0.0037835	7.66421e-5	0.0396337	0.00224403
chr11	134184802	134184873	5147567	0	-	0.408451	(0.39,0.419]	chr11	500343	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NCAPD3	ENSG00000151503.14	ENST00000534548.7:ENST00000692494.1:ENST00000688672.1:ENST00000534532.7:ENST00000689387.1:ENST00000688263.1:ENST00000525964.7:ENST00000690149.1:ENST00000687480.1:ENST00000690743.1:ENST00000685324.1:ENST00000689205.1:ENST00000525432.2:ENST00000687155.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	57	2	5.04836	5.1890350000000005	5.32971	0.0390381	0.0126072	0.131575	0.0768036
chr4	105700710	105700809	2298704	0	-	0.393939	(0.39,0.419]	chr4	231384	3	INTRON	INTRON	INTS12	ENSG00000138785.16	ENST00000451321.6:ENST00000340139.10:ENST00000394735.5:ENST00000503746.5:ENST00000420368.6:ENST00000416543.5:ENST00000433009.1:ENST00000510876.1:ENST00000515819.1	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	5.04836	5.1890350000000005	5.32971	0.0390381	0.0126072	0.131575	0.0768036
chr4	174297565	174297665	2166329	0	+	0.41	(0.39,0.419]	chr4	219335	2	SS3_PROX	SS3_PROX:INTRON	CEP44	ENSG00000164118.13	ENST00000505124.5:ENST00000457424.6:ENST00000396791.7:ENST00000503780.6:ENST00000514712.5:ENST00000515299.5:ENST00000503053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	5.04836	5.1890350000000005	5.32971	0.0390381	0.0126072	0.131575	0.0768036
chr11	129845735	129845835	4965072	0	+	0.31	(0.29,0.33]	chr11	479911	171	INTRON	INTRON	TMEM45B	ENSG00000151715.8	ENST00000281441.8:ENST00000527754.1:ENST00000529381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	60	2	4.67908	5.18896	5.69884	0.0209202	0.0155382	0.102931	0.0849828
chr8	47732381	47732469	3816974	0	+	0.522727	(0.485,0.523]	chr8	367406	2	SS5_PROX	SS5_PROX:INTRON	SPIDR	ENSG00000164808.17	ENST00000541342.2:ENST00000518074.5:ENST00000297423.9:ENST00000524126.5:ENST00000522117.5:ENST00000521214.5:ENST00000519401.5:ENST00000519141.5:ENST00000517693.5:ENST00000519362.5:ENST00000517619.5:ENST00000518060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	56	2	5.02573	5.188700000000001	5.35167	0.0294163	0.00985879	0.116079	0.0664239
chr10	132292242	132292342	4782532	0	-	0.69	(0.58,1]	chr10	457371	433	INTRON	INTRON	STK32C	ENSG00000165752.17	ENST00000298630.8:ENST00000368622.5:ENST00000368620.2	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.82753	5.188655000000001	5.54978	0.0427798	0.00165911	0.13762	0.0202545
chr2	72666825	72666925	1186608	0	-	0.42	(0.419,0.45]	chr2	128741	908	INTRON	INTRON	EXOC6B	ENSG00000144036.16	ENST00000272427.11:ENST00000634650.1:ENST00000410104.1:ENST00000410112.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	59	2	4.69033	5.1885449999999995	5.68676	0.0958674	0.00338051	0.189038	0.0328791
chr2	3458561	3458661	711018	0	+	0.47	(0.45,0.485]	chr2	83175	1	SS5_PROX	SS5_PROX:INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000479955.5:ENST00000497597.5:ENST00000473348.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	442	2	5.01764	5.188525	5.35941	7.56555e-4	3.62788e-5	0.0162519	0.00129691
chr7	1071182	1071282	3526939	0	-	0.44	(0.419,0.45]	chr7	340585	160	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	4.9329	5.188485	5.44407	0.0716557	0.00585948	0.168159	0.0474117
chr10	119253834	119253934	4593785	0	+	0.48	(0.45,0.485]	chr10	439167	408	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.95056	5.188215	5.42587	0.0290571	0.0127826	0.116079	0.0773423
chr12	132521638	132521738	5352830	0	+	0.58	(0.523,0.58]	chr12	523658	98	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.90222	5.18802	5.47382	0.0244797	0.0125132	0.106683	0.0765738
chr16	74910417	74910515	6643391	0	-	0.438776	(0.419,0.45]	chr16	664237	1	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000569229.5:ENST00000616369.4:ENST00000562371.5:ENST00000569549.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	57	2	5.09718	5.18793	5.27868	0.0457732	0.012235	0.142336	0.0757339
chr2	196922486	196922586	1351133	0	-	0.42	(0.419,0.45]	chr2	143483	3	SS3_PROX	SS3_PROX:INTRON	PGAP1	ENSG00000197121.15	ENST00000354764.9:ENST00000423035.5:ENST00000470179.5:ENST00000409475.5:ENST00000409188.5:ENST00000374738.3:ENST00000485830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	158	2	3.56008	5.187905000000001	6.81573	0.0250979	1.90368e-4	0.107672	0.0043642
chr8	30446842	30446942	3788791	0	+	0.53	(0.523,0.58]	chr8	364901	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RBPMS	ENSG00000157110.16	ENST00000320203.8:ENST00000339877.8:ENST00000287771.9:ENST00000397323.9:ENST00000517860.5:ENST00000520161.5:ENST00000523115.5:ENST00000519647.5:ENST00000521816.1:ENST00000520191.5:ENST00000523717.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	4.5249	5.187885	5.85087	0.0266135	0.0132767	0.118113	0.0787251
chr11	70797642	70797742	5062258	0	-	0.64	(0.58,1]	chr11	492701	798	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	4.81862	5.187715	5.55681	0.0126042	0.0102696	0.0761905	0.0678072
chr11	70743183	70743283	5061713	0	-	0.65	(0.58,1]	chr11	492701	253	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	5.02314	5.18764	5.35214	0.0181452	0.00638322	0.0921579	0.0501889
chr14	23522399	23522499	5757178	0	+	0.7	(0.58,1]	chr14	564963	76	INTRON	INTRON	ZFHX2-AS1	ENSG00000157306.14	ENST00000556354.5:ENST00000553985.1:ENST00000554403.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	54	2	5.02314	5.18764	5.35214	0.0181452	0.00638322	0.0921579	0.0501889
chr2	239086606	239086696	1389541	0	-	0.666667	(0.58,1]	chr2	148609	3	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000487617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	5.02314	5.18764	5.35214	0.0181452	0.00638322	0.0921579	0.0501889
chr19	38649059	38649159	7257854	0	+	0.49	(0.485,0.523]	chr19	743980	4	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	121	2	4.13042	5.187635	6.24485	0.00665813	0.00166514	0.0540577	0.0203119
chr1	204081778	204081878	322137	0	+	0.57	(0.523,0.58]	chr1	36272	32	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1:ENST00000528591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	5.06957	5.18736	5.30515	0.0448011	0.00509102	0.140478	0.0433513
chr16	30990443	30990542	6579785	0	-	0.545455	(0.523,0.58]	chr16	657721	13	UTR3	UTR3:EXON_MRNA	STX1B	ENSG00000099365.11	ENST00000215095.11	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.06957	5.18736	5.30515	0.0448011	0.00509102	0.140478	0.0433513
chr22	38818648	38818747	7812847	0	-	0.59596	(0.58,1]	chr22	819285	3	UTR3	UTR3:EXON_MRNA	NPTXR	ENSG00000221890.6	ENST00000333039.4	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.74346	5.18732	5.63118	0.0121457	0.0109983	0.0754623	0.0708586
chr17	17686748	17686848	6688902	0	+	0.56	(0.523,0.58]	chr17	671338	18	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.1205	5.187265	5.25403	0.0416463	0.00573579	0.136301	0.0467736
chr20	48934502	48934602	7490280	0	+	0.54	(0.523,0.58]	chr20	780774	121	INTRON	INTRON	ARFGEF2	ENSG00000124198.10	ENST00000371917.5:ENST00000681399.1:ENST00000679436.1:ENST00000681885.1:ENST00000681021.1:ENST00000680871.1:ENST00000681656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	5.1205	5.187265	5.25403	0.0416463	0.00573579	0.136301	0.0467736
chr6	13708841	13708941	3098065	0	-	0.42	(0.419,0.45]	chr6	300679	116	INTRON	INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	4.85365	5.18719	5.52073	0.0327198	0.0197641	0.122543	0.100774
chr10	18559566	18559665	4642324	0	-	0.414141	(0.39,0.419]	chr10	443321	72	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	4.48504	5.18665	5.88826	0.0364893	0.0169925	0.139793	0.0889149
chr18	24099065	24099165	7035914	0	+	0.3	(0.29,0.33]	chr18	718596	156	INTRON	INTRON	TTC39C	ENSG00000168234.13	ENST00000304621.10:ENST00000317571.8	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.07676	5.18651	5.29626	0.0412683	0.005619	0.136301	0.0462026
chr22	35342386	35342486	7719107	0	+	0.5	(0.485,0.523]	chr22	807957	32	INTRON	INTRON	TOM1	ENSG00000100284.22	ENST00000447733.5:ENST00000411850.5:ENST00000425375.5:ENST00000404284.6:ENST00000424387.5:ENST00000449058.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	4.8987	5.186475	5.47425	0.0243396	0.0129327	0.106588	0.0778105
chr5	109165516	109165616	2503057	0	+	0.51	(0.485,0.523]	chr5	248802	646	INTRON	INTRON	FER	ENSG00000151422.14	ENST00000281092.9:ENST00000504143.6:ENST00000438717.6:ENST00000618353.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	4.8987	5.186475	5.47425	0.0243396	0.0129327	0.106588	0.0778105
chr6	128053165	128053265	3252475	0	-	0.5	(0.485,0.523]	chr6	315116	435	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000415046.6:ENST00000524481.5:ENST00000531050.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	586	2	4.99238	5.186265000000001	5.38015	5.46563e-4	9.43836e-6	0.0136476	4.93382e-4
chr7	24581161	24581260	3330231	0	+	0.484848	(0.45,0.485]	chr7	322481	65	INTRON	INTRON	PALS2	ENSG00000105926.16	ENST00000432190.5:ENST00000409761.5:ENST00000222644.10:ENST00000396475.6:ENST00000430180.5	protein_coding	protein_coding	protein_coding	protein_coding	1	129	2	3.70282	5.186005	6.66919	0.00539085	0.0035963	0.0450882	0.0384878
chr17	19545052	19545150	6695621	0	+	0.459184	(0.45,0.485]	chr17	672195	22	INTRON	INTRON	SLC47A1	ENSG00000142494.13	ENST00000584348.5:ENST00000571335.5:ENST00000436810.6:ENST00000270570.8:ENST00000575023.5:ENST00000576095.5:ENST00000497548.5:ENST00000395585.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	56	2	5.0722	5.1859649999999995	5.29973	0.035042	0.00988295	0.12704	0.0664239
chr20	50113683	50113780	7576516	0	-	0.453608	(0.45,0.485]	chr20	791586	6	INTRON	INTRON	PEDS1-UBE2V1:UBE2V1	ENSG00000124208.16:ENSG00000244687.13	ENST00000341698.2:ENST00000340309.7:ENST00000371677.7:ENST00000415862.6:ENST00000483534.5:ENST00000492371.6:ENST00000462217.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	56	2	5.0722	5.1859649999999995	5.29973	0.035042	0.00988295	0.12704	0.0664239
chr17	76439836	76439936	6976392	0	-	0.52	(0.485,0.523]	chr17	712141	339	INTRON	INTRON	UBE2O	ENSG00000175931.13	ENST00000319380.12:ENST00000586409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	124	2	3.83677	5.18592	6.53507	0.00392199	0.00360381	0.0404814	0.0342681
chr8	47827061	47827161	3972568	0	-	0.42	(0.419,0.45]	chr8	379878	2	SS3_PROX	SS3_PROX:INTRON	PRKDC	ENSG00000253729.8	ENST00000314191.7:ENST00000338368.7	protein_coding	protein_coding	protein_coding	protein_coding	1	130	2	4.30181	5.185915	6.07002	0.0143746	0.00146956	0.0821732	0.0185589
chr3	119875485	119875585	1884881	0	-	0.48	(0.45,0.485]	chr3	191259	3	SS3_PROX	SS3_PROX:INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000678013.1:ENST00000676910.1:ENST00000679201.1:ENST00000677502.1:ENST00000676566.1:ENST00000650344.2:ENST00000679206.1:ENST00000677716.1:ENST00000679194.1:ENST00000677362.1:ENST00000678121.1:ENST00000678181.1:ENST00000678561.1:ENST00000676887.1:ENST00000676948.1:ENST00000678064.1:ENST00000677046.1:ENST00000676844.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	167	2	3.5117	5.18588	6.86006	0.00289032	0.00252685	0.031696	0.0297318
chr6	16749975	16750033	3104346	0	-	0.517241	(0.485,0.523]	chr6	300900	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6:ENST00000495178.1:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1:ENST00000676138.1:ENST00000467008.5:ENST00000498374.1:ENST00000492857.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	5.06999	5.18579	5.30159	0.0445854	0.00529578	0.140478	0.044517
chr6	326058	326158	2824088	0	+	0.61	(0.58,1]	chr6	277201	10	UTR5	UTR5:EXON_MRNA:INTRON	DUSP22	ENSG00000112679.15	ENST00000603296.5:ENST00000344450.9:ENST00000603453.5:ENST00000605315.5:ENST00000603881.5:ENST00000603795.5:ENST00000605035.5:ENST00000605863.5:ENST00000419235.7:ENST00000603005.5:ENST00000603726.5:ENST00000603290.1:ENST00000605391.5:ENST00000604971.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	55	2	4.6951	5.18576	5.67642	0.0521567	0.00117039	0.148503	0.0157899
chr7	2048211	2048311	3530714	0	-	0.61	(0.58,1]	chr7	340995	332	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	4.6951	5.18576	5.67642	0.0521567	0.00117039	0.148503	0.0157899
chr13	32645954	32646054	5565174	0	+	0.51	(0.485,0.523]	chr13	549086	590	INTRON	INTRON	PDS5B	ENSG00000083642.19	ENST00000315596.15:ENST00000482955.5:ENST00000498550.5:ENST00000450460.5:ENST00000493653.1:ENST00000466078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	55	2	5.12092	5.1857	5.25048	0.0414411	0.0059614	0.136301	0.0479866
chr16	83921160	83921260	6513136	0	+	0.5	(0.485,0.523]	chr16	646141	58	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	5.12092	5.1857	5.25048	0.0414411	0.0059614	0.136301	0.0479866
chr10	103702906	103703006	4757129	0	-	0.58	(0.523,0.58]	chr10	454791	94	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	5.01677	5.185645	5.35452	0.0482765	0.00453096	0.144601	0.0400651
chr10	127429099	127429198	4612239	0	+	0.545455	(0.523,0.58]	chr10	440909	27	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.01677	5.185645	5.35452	0.0482765	0.00453096	0.144601	0.0400651
chr4	153487385	153487485	2151092	0	+	0.55	(0.523,0.58]	chr4	217962	131	INTRON	INTRON	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000445960.5:ENST00000409959.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	5.01677	5.185645	5.35452	0.0482765	0.00453096	0.144601	0.0400651
chr1	2172788	2172888	4358	0	+	0.63	(0.58,1]	chr1	1006	4	SS5_PROX	SS5_PROX:INTRON	PRKCZ	ENSG00000067606.17	ENST00000378567.8:ENST00000400921.6:ENST00000461106.6:ENST00000479263.5:ENST00000478770.6:ENST00000505322.5:ENST00000472017.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	53	2	5.0607	5.18553	5.31036	0.029633	0.00312721	0.116079	0.0311915
chr11	64321168	64321247	4868968	0	+	0.607595	(0.58,1]	chr11	467400	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRDX5	ENSG00000126432.14	ENST00000265462.9:ENST00000347941.4:ENST00000352435.8	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.0607	5.18553	5.31036	0.029633	0.00312721	0.116079	0.0311915
chr12	132527988	132528088	5352895	0	+	0.63	(0.58,1]	chr12	523668	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.0607	5.18553	5.31036	0.029633	0.00312721	0.116079	0.0311915
chr15	22559088	22559188	6059865	0	+	0.65	(0.58,1]	chr15	594971	16	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	53	2	5.0607	5.18553	5.31036	0.029633	0.00312721	0.116079	0.0311915
chr16	85591627	85591727	6518989	0	+	0.62	(0.58,1]	chr16	646396	349	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.0607	5.18553	5.31036	0.029633	0.00312721	0.116079	0.0311915
chr8	628837	628937	3932008	0	-	0.65	(0.58,1]	chr8	376005	12	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	53	2	5.0607	5.18553	5.31036	0.029633	0.00312721	0.116079	0.0311915
chr19	53521420	53521515	7290494	0	+	0.610526	(0.58,1]	chr19	750312	6	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	ZNF331	ENSG00000130844.19	ENST00000647573.1:ENST00000648236.1:ENST00000513929.6:ENST00000253144.13:ENST00000649326.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	5.11355	5.18543	5.25731	0.0271806	0.00358178	0.112113	0.0342681
chr22	46850075	46850175	7745889	0	+	0.6	(0.58,1]	chr22	812199	521	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	5.11355	5.18543	5.25731	0.0271806	0.00358178	0.112113	0.0342681
chr3	13021832	13021932	1689354	0	-	0.59	(0.58,1]	chr3	176538	4	SS5_PROX	SS5_PROX:INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.11355	5.18543	5.25731	0.0271806	0.00358178	0.112113	0.0342681
chr4	1325568	1325665	1995294	0	+	0.659794	(0.58,1]	chr4	203264	16	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	53	2	5.11355	5.18543	5.25731	0.0271806	0.00358178	0.112113	0.0342681
chr8	66669190	66669289	3836795	0	+	0.323232	(0.29,0.33]	chr8	368383	11	INTRON	INTRON	C8orf44	ENSG00000288596.2	ENST00000521113.1:ENST00000661636.1:ENST00000521889.5	lncRNA	lncRNA	lncRNA	lncRNA	0	55	2	5.02395	5.184785	5.34562	0.0445554	0.00501126	0.140478	0.0429092
chr3	100021821	100021921	1519166	0	+	0.34	(0.33,0.36]	chr3	161654	97	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	56	2	5.11654	5.18473	5.25292	0.0384256	0.00998589	0.131324	0.0667545
chr2	159324710	159324810	1287961	0	-	0.26	[0,0.29]	chr2	138445	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	BAZ2B	ENSG00000123636.19	ENST00000392782.5:ENST00000392783.7:ENST00000548440.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	5.16198	5.184555	5.20713	0.0248721	0.00622515	0.10758	0.0496245
chr16	20904510	20904610	6418004	0	+	0.32	(0.29,0.33]	chr16	634694	14	INTRON	INTRON	LYRM1	ENSG00000102897.10	ENST00000568663.5:ENST00000412082.6:ENST00000439021.5:ENST00000567165.5:ENST00000569023.5:ENST00000568820.5:ENST00000562740.5:ENST00000219168.8:ENST00000567954.6:ENST00000396052.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	5.1769	5.1845300000000005	5.19216	0.035586	0.00712176	0.127529	0.0541241
chr19	45410546	45410641	7272714	0	+	0.484211	(0.45,0.485]	chr19	746951	12	UTR3	UTR3:EXON_MRNA	POLR1G	ENSG00000117877.11	ENST00000309424.8	protein_coding	protein_coding	protein_coding	protein_coding	1	150	2	3.53745	5.1844600000000005	6.83147	0.0221397	1.05911e-4	0.101784	0.00286061
chr1	43566099	43566199	107100	0	+	0.75	(0.58,1]	chr1	13192	118	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	4.89007	5.1842299999999994	5.47839	0.0145198	0.00872525	0.0823104	0.0612699
chr19	8435812	8435911	7200942	0	+	0.585859	(0.58,1]	chr19	734321	46	INTRON	INTRON	MARCHF2	ENSG00000099785.11	ENST00000381035.8:ENST00000215555.7:ENST00000601283.5:ENST00000602117.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.89007	5.1842299999999994	5.47839	0.0145198	0.00872525	0.0823104	0.0612699
chr6	144631464	144631564	3023382	0	+	0.38	(0.36,0.39]	chr6	295440	475	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000367526.8	protein_coding	protein_coding	protein_coding	protein_coding	1	127	2	4.19101	5.18417	6.17733	0.0104543	0.00182555	0.0688771	0.0216571
chr19	17196349	17196443	7219436	0	+	0.5	(0.485,0.523]	chr19	737846	5	INTRON	INTRON	MYO9B	ENSG00000099331.14	ENST00000682292.1:ENST00000595618.5:ENST00000594824.5:ENST00000397274.6:ENST00000595641.5	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.01719	5.184075	5.35096	0.0480495	0.0047171	0.144601	0.0413976
chr4	106311180	106311279	2303408	0	-	0.464646	(0.45,0.485]	chr4	231626	7	INTRON	INTRON	TBCK	ENSG00000145348.17	ENST00000273980.10:ENST00000394708.7:ENST00000361687.8:ENST00000394706.7:ENST00000467183.6:ENST00000509532.5:ENST00000507696.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	446	2	4.8764	5.183965000000001	5.49153	5.80247e-4	5.62743e-5	0.0141176	0.00178963
chrX	56963599	56963699	8050637	0	-	0.38	(0.36,0.39]	chrX	840438	1007	INTRON	INTRON	SPIN3	ENSG00000204271.13	ENST00000640101.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	154	2	3.72409	5.18388	6.64367	0.0179032	2.6343e-4	0.0918791	0.00553857
chr2	239086967	239087058	1389545	0	-	0.67033	(0.58,1]	chr2	148609	7	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000487617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	53	2	5.00585	5.18369	5.36153	0.0323732	0.00273899	0.121593	0.028553
chr7	112205801	112205901	3692566	0	-	0.74	(0.58,1]	chr7	354970	3	SS5_PROX	SS5_PROX:INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	136	2	4.10163	5.183535	6.26544	0.00506731	2.06156e-4	0.0465789	0.00461335
chr13	46567502	46567602	5584049	0	+	0.4	(0.39,0.419]	chr13	550714	134	INTRON	INTRON	LRCH1	ENSG00000136141.15	ENST00000311191.10:ENST00000389797.8:ENST00000443945.6:ENST00000389798.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	127	2	4.05528	5.18347	6.31166	0.00855563	0.00258839	0.0621561	0.027634
chr21	44867725	44867823	7678519	0	-	0.5	(0.485,0.523]	chr21	802773	17	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	491	2	4.10606	5.183385	6.26071	0.00177809	9.74731e-5	0.0212512	0.00552067
chr1	1222444	1222544	380411	0	-	0.65	(0.58,1]	chr1	42841	12	INTRON	INTRON	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000403997.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	5.16453	5.18338	5.20223	0.0249802	0.00411607	0.10758	0.0374453
chr16	85367545	85367645	6516746	0	+	0.61	(0.58,1]	chr16	646391	82	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.16453	5.18338	5.20223	0.0249802	0.00411607	0.10758	0.0374453
chr17	80876627	80876726	6812237	0	+	0.666667	(0.58,1]	chr17	687891	184	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	5.16453	5.18338	5.20223	0.0249802	0.00411607	0.10758	0.0374453
chr22	36329150	36329249	7806810	0	-	0.585859	(0.58,1]	chr22	818135	3	INTRON	INTRON	MYH9	ENSG00000100345.23	ENST00000216181.11:ENST00000685801.1:ENST00000692930.1:ENST00000685187.1:ENST00000691687.1:ENST00000685191.1:ENST00000688137.1:ENST00000401701.1:ENST00000691296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	53	2	5.16453	5.18338	5.20223	0.0249802	0.00411607	0.10758	0.0374453
chr22	50729472	50729571	7755486	0	+	0.636364	(0.58,1]	chr22	812807	50	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	53	2	5.16453	5.18338	5.20223	0.0249802	0.00411607	0.10758	0.0374453
chr7	218256	218356	3305837	0	+	0.71	(0.58,1]	chr7	320161	89	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.16453	5.18338	5.20223	0.0249802	0.00411607	0.10758	0.0374453
chr10	18555968	18556068	4642288	0	-	0.35	(0.33,0.36]	chr10	443321	36	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	4.49588	5.18305	5.87022	0.033477	0.0148989	0.133139	0.0834354
chr19	17483961	17484041	7220772	0	+	0.525	(0.523,0.58]	chr19	738262	2	UTR5	UTR5:EXON_MRNA:INTRON	SLC27A1	ENSG00000130304.17	ENST00000600277.5:ENST00000598424.5:ENST00000252595.12:ENST00000599380.5:ENST00000600297.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	61	2	4.60868	5.18305	5.75742	0.0226775	0.0155135	0.108193	0.0849828
chr3	186084380	186084480	1972018	0	-	0.39	(0.36,0.39]	chr3	200538	1	SS3_PROX	SS3_PROX:INTRON	ETV5	ENSG00000244405.8	ENST00000306376.10:ENST00000434744.5:ENST00000472868.6:ENST00000440773.5:ENST00000421809.5:ENST00000413301.5:ENST00000422039.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	5.1004	5.18274	5.26508	0.0526991	0.00795848	0.14912	0.0578938
chr5	122058420	122058520	2520798	0	+	0.39	(0.36,0.39]	chr5	250297	299	INTRON	INTRON	SRFBP1	ENSG00000151304.6	ENST00000504881.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	56	2	5.1004	5.18274	5.26508	0.0526991	0.00795848	0.14912	0.0578938
chr2	36871223	36871323	1119608	0	-	0.44	(0.419,0.45]	chr2	122368	11	INTRON	INTRON	STRN	ENSG00000115808.12	ENST00000263918.9:ENST00000379213.3:ENST00000495595.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	58	2	4.7549	5.182605000000001	5.61031	0.0888907	0.004032	0.183874	0.0371291
chr1	6790355	6790455	8496	0	+	0.43	(0.419,0.45]	chr1	1830	44	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12:ENST00000490738.5:ENST00000476163.5:ENST00000473578.5:ENST00000557126.5:ENST00000467404.6:ENST00000461311.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	130	2	3.87872	5.182375	6.48603	0.00734278	0.00421639	0.0570055	0.0380856
chr5	81121059	81121158	2469865	0	+	0.454545	(0.45,0.485]	chr5	246642	68	INTRON	INTRON	RASGRF2	ENSG00000113319.13	ENST00000265080.9:ENST00000503795.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	59	2	4.5725	5.182205	5.79191	0.0926859	0.00183113	0.188571	0.0216571
chr10	74267610	74267710	4512850	0	+	0.37	(0.36,0.39]	chr10	431931	242	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	4.82572	5.182135	5.53855	0.0751666	0.00432809	0.172839	0.0389438
chr16	89316334	89316432	6659977	0	-	0.571429	(0.523,0.58]	chr16	666672	24	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	55	2	4.96197	5.18211	5.40225	0.0521137	0.00404292	0.148503	0.0371291
chr10	74577084	74577184	4515956	0	+	0.39	(0.36,0.39]	chr10	431975	257	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	4.56076	5.1820450000000005	5.80333	0.103289	0.00231859	0.197541	0.0255753
chr1	10258292	10258392	24350	0	+	0.37	(0.36,0.39]	chr1	2701	4	SS3_PROX	SS3_PROX:INTRON	KIF1B	ENSG00000054523.20	ENST00000676179.1:ENST00000377093.9:ENST00000696500.1:ENST00000696501.1:ENST00000263934.10:ENST00000696502.1:ENST00000696503.1:ENST00000696504.1:ENST00000377086.5:ENST00000377083.5:ENST00000377081.5:ENST00000696506.1:ENST00000620295.2:ENST00000622724.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	5.04949	5.18195	5.31441	0.0563927	0.00715023	0.154188	0.0541241
chr16	14875858	14875922	6402504	0	+	0.375	(0.36,0.39]	chr16	632481	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOMO1	ENSG00000103512.16	ENST00000287667.12	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.04949	5.18195	5.31441	0.0563927	0.00715023	0.154188	0.0541241
chr16	84124823	84124918	6649300	0	-	0.368421	(0.36,0.39]	chr16	665181	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HSDL1	ENSG00000103160.12	ENST00000219439.9:ENST00000619773.1:ENST00000434463.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	56	2	5.04949	5.18195	5.31441	0.0563927	0.00715023	0.154188	0.0541241
chr14	56584107	56584205	5825840	0	+	0.408163	(0.39,0.419]	chr14	569604	37	INTRON	INTRON	TMEM260	ENSG00000070269.14	ENST00000556810.5:ENST00000556422.5:ENST00000261556.11:ENST00000557657.5:ENST00000555497.5:ENST00000556975.5:ENST00000557626.5:ENST00000539559.6:ENST00000538838.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	56	2	5.09906	5.181785	5.26451	0.0535378	0.00800901	0.150319	0.0580954
chr6	2835074	2835167	3085370	0	-	0.430108	(0.419,0.45]	chr6	299537	7	INTRON	INTRON	SERPINB1	ENSG00000021355.13	ENST00000380739.6:ENST00000468511.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	4.87598	5.18172	5.48746	0.0768574	0.00532156	0.174882	0.0446153
chr15	83039927	83040027	6342389	0	-	0.53	(0.523,0.58]	chr15	625223	92	INTRON	INTRON	BTBD1	ENSG00000064726.10	ENST00000261721.9:ENST00000379403.2:ENST00000559652.5:ENST00000560015.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	55	2	5.14602	5.181645	5.21727	0.0361597	0.00734367	0.127853	0.0550721
chr19	1168093	1168193	7305733	0	-	0.55	(0.523,0.58]	chr19	753054	131	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5:ENST00000587655.2	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.14602	5.181645	5.21727	0.0361597	0.00734367	0.127853	0.0550721
chr2	73283653	73283753	1190774	0	-	0.58	(0.523,0.58]	chr2	129051	1	SS5_PROX	SS5_PROX:INTRON	FBXO41	ENSG00000163013.12	ENST00000520530.3:ENST00000521871.5:ENST00000520186.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	5.14602	5.181645	5.21727	0.0361597	0.00734367	0.127853	0.0550721
chr21	43605367	43605466	7677124	0	-	0.565657	(0.523,0.58]	chr21	802562	127	INTRON	INTRON	HSF2BP	ENSG00000160207.9	ENST00000291560.7	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.14602	5.181645	5.21727	0.0361597	0.00734367	0.127853	0.0550721
chr3	188240761	188240861	1652666	0	+	0.56	(0.523,0.58]	chr3	173754	2	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.14602	5.181645	5.21727	0.0361597	0.00734367	0.127853	0.0550721
chr1	178235579	178235679	287957	0	+	0.47	(0.45,0.485]	chr1	32935	13	INTRON	INTRON	RASAL2	ENSG00000075391.18	ENST00000367649.8:ENST00000465723.1:ENST00000696605.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	4.64346	5.18137	5.71928	0.0850039	0.00219685	0.181766	0.0245167
chr1	236844471	236844570	366310	0	+	0.444444	(0.419,0.45]	chr1	41482	55	INTRON	INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1:ENST00000681937.1:ENST00000366576.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	157	2	3.67133	5.181345	6.69136	0.021076	2.67131e-4	0.0996078	0.00557451
chr2	70922979	70923078	827470	0	+	0.525253	(0.523,0.58]	chr2	93285	13	INTRON	INTRON	VAX2	ENSG00000116035.4	ENST00000234392.3:ENST00000432367.6:ENST00000646783.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	4.78384	5.1813199999999995	5.5788	0.0663135	0.00262418	0.162385	0.0278348
chr10	102648712	102648812	4576511	0	+	0.56	(0.523,0.58]	chr10	437280	25	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	435	2	4.56024	5.180885	5.80153	0.0013395	1.04174e-5	0.0223679	5.30168e-4
chr10	72193427	72193526	4708680	0	-	0.40404	(0.39,0.419]	chr10	448792	111	INTRON	INTRON	ASCC1	ENSG00000138303.18	ENST00000672957.1:ENST00000394919.5:ENST00000317168.11:ENST00000342444.8:ENST00000486689.6:ENST00000673599.1:ENST00000672774.1:ENST00000671788.1:ENST00000672121.1:ENST00000672940.1:ENST00000317126.8:ENST00000394915.7:ENST00000525286.6:ENST00000531048.5:ENST00000461369.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	5.14823	5.180835	5.21344	0.0501234	0.00893514	0.147892	0.0620271
chr2	156100393	156100493	1285832	0	-	0.35	(0.33,0.36]	chr2	138339	754	INTRON	INTRON	LINC01876	ENSG00000226383.7	ENST00000635799.1:ENST00000662073.1:ENST00000659502.1:ENST00000428651.2:ENST00000661513.1:ENST00000657334.1:ENST00000638047.1:ENST00000637554.1:ENST00000636956.1:ENST00000637665.1:ENST00000637476.1:ENST00000637324.1	lncRNA	lncRNA	lncRNA	lncRNA	0	57	2	4.93777	5.180720000000001	5.42367	0.0299185	0.0144674	0.116945	0.0833845
chr11	63872066	63872166	4867134	0	+	0.51	(0.485,0.523]	chr11	466776	23	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5:ENST00000543674.1:ENST00000540169.5	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.96239	5.180540000000001	5.39869	0.0518747	0.00421243	0.148503	0.0380601
chr12	15781222	15781321	5380413	0	-	0.292929	(0.29,0.33]	chr12	527517	6	INTRON	INTRON	EPS8	ENSG00000151491.14	ENST00000281172.10:ENST00000543523.5:ENST00000543468.5:ENST00000644374.1:ENST00000646918.1:ENST00000645775.1:ENST00000642939.1:ENST00000646828.1:ENST00000647224.1:ENST00000642278.1:ENST00000646123.1:ENST00000647087.1:ENST00000536956.5:ENST00000535752.5:ENST00000536793.5:ENST00000544064.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	4.79099	5.180429999999999	5.56987	0.061706	0.0029307	0.158854	0.0298918
chr11	70818663	70818763	5062470	0	-	0.58	(0.523,0.58]	chr11	492713	111	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	4.96714	5.180205	5.39327	0.0277354	0.0108948	0.112851	0.0706366
chr9	124489982	124490081	4402622	0	-	0.575758	(0.523,0.58]	chr9	419805	66	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.96714	5.180205	5.39327	0.0277354	0.0108948	0.112851	0.0706366
chrX	65516335	65516431	8055037	0	-	0.5	(0.485,0.523]	chrX	840752	10	INTRON	INTRON	LAS1L	ENSG00000001497.18	ENST00000677056.1:ENST00000677969.1:ENST00000374811.8:ENST00000374807.9:ENST00000677834.1:ENST00000484069.1:ENST00000374804.9:ENST00000677986.1:ENST00000677087.1:ENST00000679056.1:ENST00000679261.1:ENST00000678074.1:ENST00000678705.1:ENST00000679277.1:ENST00000677154.1:ENST00000678547.1:ENST00000678956.1:ENST00000679116.1:ENST00000678848.1:ENST00000678173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	55	2	5.14248	5.180085	5.21769	0.0359739	0.00761903	0.127853	0.0561937
chr7	157381656	157381754	3522171	0	+	0.397959	(0.39,0.419]	chr7	340182	37	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000441291.5:ENST00000412557.5:ENST00000634080.1:ENST00000468928.5:ENST00000465908.5:ENST00000487480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	172	2	3.48402	5.1800250000000005	6.87603	0.00359214	0.00322454	0.0362983	0.0342681
chr7	143385228	143385325	3510757	0	+	0.546392	(0.523,0.58]	chr7	338486	6	INTRON	INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	120	2	4.2352	5.17999	6.12478	0.00829271	0.00122149	0.0610772	0.0163228
chrX	1443710	1443809	7965930	0	-	0.585859	(0.58,1]	chrX	834314	10	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9:ENST00000474865.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	4.94882	5.179880000000001	5.41094	0.0354433	0.00240622	0.127188	0.0261006
chr4	113720350	113720450	2314022	0	-	0.37	(0.36,0.39]	chr4	232470	582	INTRON	INTRON	CAMK2D	ENSG00000145349.18	ENST00000683023.1:ENST00000296402.9:ENST00000511664.6:ENST00000394524.7:ENST00000342666.9:ENST00000514328.5:ENST00000515496.5:ENST00000394522.7:ENST00000505990.5:ENST00000379773.6:ENST00000508738.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	128	2	3.88364	5.17988	6.47612	0.00632423	0.00394555	0.0524897	0.0367806
chr5	104274777	104274877	2497537	0	+	0.38	(0.36,0.39]	chr5	248658	1695	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	2	225	2	3.75507	5.179805	6.60454	0.00815324	2.93176e-4	0.0605301	0.00597401
chr22	19816621	19816720	7764390	0	-	0.464646	(0.45,0.485]	chr22	813901	38	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	4.81772	5.17979	5.54186	0.0243502	0.0167663	0.106588	0.0917029
chr1	7498800	7498900	15598	0	+	0.51	(0.485,0.523]	chr1	1895	305	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	4.33772	5.17976	6.0218	0.03818	0.00985907	0.140822	0.0670775
chr3	134372823	134372919	1920527	0	-	0.5	(0.485,0.523]	chr3	195370	6	INTRON	INTRON	AMOTL2	ENSG00000114019.15	ENST00000249883.10:ENST00000514516.5:ENST00000422605.6:ENST00000513145.1:ENST00000512955.1:ENST00000511759.1:ENST00000510560.1:ENST00000504234.1:ENST00000506107.1:ENST00000515172.1:ENST00000502491.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	4.78426	5.1797450000000005	5.57523	0.0660335	0.00274261	0.162385	0.028553
chr21	6121911	6122010	7589006	0	+	0.414141	(0.39,0.419]	chr21	793510	5	UTR3	UTR3:EXON_MRNA	ENSG00000275993	ENSG00000275993.3	ENST00000613488.3	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	4.79402	5.1796	5.56518	0.027797	0.0208208	0.112962	0.102713
chr11	64135399	64135499	5048931	0	-	0.62	(0.58,1]	chr11	490257	86	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	53	2	5.14497	5.1793700000000005	5.21377	0.0230012	0.00474658	0.102982	0.0413976
chr11	70763568	70763668	5061917	0	-	0.61	(0.58,1]	chr11	492701	457	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	5.14497	5.1793700000000005	5.21377	0.0230012	0.00474658	0.102982	0.0413976
chr17	357196	357296	6821865	0	-	0.6	(0.58,1]	chr17	689641	42	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.14497	5.1793700000000005	5.21377	0.0230012	0.00474658	0.102982	0.0413976
chr20	36312705	36312805	7469114	0	+	0.63	(0.58,1]	chr20	777805	58	INTRON	INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.14497	5.1793700000000005	5.21377	0.0230012	0.00474658	0.102982	0.0413976
chr3	120078974	120079073	1886970	0	-	0.585859	(0.58,1]	chr3	191436	43	INTRON	INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000650344.2:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000677128.1:ENST00000677530.1:ENST00000677034.1:ENST00000679131.1:ENST00000676743.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	53	2	5.14497	5.1793700000000005	5.21377	0.0230012	0.00474658	0.102982	0.0413976
chr7	206609	206709	3305720	0	+	0.68	(0.58,1]	chr7	320155	92	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6:ENST00000477004.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	5.14497	5.1793700000000005	5.21377	0.0230012	0.00474658	0.102982	0.0413976
chr8	130284641	130284741	4082040	0	-	0.46	(0.45,0.485]	chr8	388157	377	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000521075.5:ENST00000524367.5:ENST00000520927.5:ENST00000524299.1:ENST00000521426.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	56	2	4.83755	5.17872	5.51989	0.06646	0.00357389	0.162385	0.0342681
chr2	72666725	72666825	1186607	0	-	0.39	(0.36,0.39]	chr2	128741	907	INTRON	INTRON	EXOC6B	ENSG00000144036.16	ENST00000272427.11:ENST00000634650.1:ENST00000410104.1:ENST00000410112.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	58	2	4.69932	5.17867	5.65802	0.0877431	0.003279	0.183437	0.0322062
chr21	37367152	37367247	7618970	0	+	0.810526	(0.58,1]	chr21	796005	5	UTR5	UTR5:EXON_MRNA:INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1	protein_coding	protein_coding	protein_coding	protein_coding	4	454	2	4.24839	5.178585	6.10878	8.59448e-4	1.56696e-6	0.0174632	1.41032e-4
chr10	75949017	75949117	4525659	0	+	0.4	(0.39,0.419]	chr10	432292	651	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	4.99538	5.178465	5.36155	0.0613573	0.00648185	0.158506	0.0503748
chr1	227256953	227257053	679174	0	-	0.4	(0.39,0.419]	chr1	79887	24	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	56	2	5.16048	5.178134999999999	5.19579	0.0469937	0.00999413	0.143232	0.0667545
chr2	202655785	202655885	996353	0	+	0.41	(0.39,0.419]	chr2	109362	196	INTRON	INTRON	FAM117B	ENSG00000138439.12	ENST00000392238.3:ENST00000481658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	56	2	5.16048	5.178134999999999	5.19579	0.0469937	0.00999413	0.143232	0.0667545
chr6	130868984	130869062	3260224	0	-	0.397436	(0.39,0.419]	chr6	315459	2	INTRON	INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000528282.5:ENST00000531410.5:ENST00000392427.7:ENST00000530757.5:ENST00000368128.6:ENST00000527411.5:ENST00000524581.5:ENST00000525271.5:ENST00000529208.5:ENST00000525193.5:ENST00000527659.5:ENST00000527017.6	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.16048	5.178134999999999	5.19579	0.0469937	0.00999413	0.143232	0.0667545
chr16	23067846	23067945	6567026	0	-	0.464646	(0.45,0.485]	chr16	655168	66	UTR3	UTR3:EXON_MRNA	USP31	ENSG00000103404.15	ENST00000219689.12	protein_coding	protein_coding	protein_coding	protein_coding	3	438	2	5.04569	5.17808	5.31047	8.34288e-4	3.32323e-5	0.0171608	0.00121702
chr12	132534162	132534261	5352957	0	+	0.707071	(0.58,1]	chr12	523670	58	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	133	2	3.93773	5.177995	6.41826	0.00708574	1.27804e-4	0.0558168	0.00328053
chr1	183069976	183070076	300332	0	+	0.41	(0.39,0.419]	chr1	34079	455	INTRON	INTRON	LAMC1	ENSG00000135862.6	ENST00000258341.5	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.69798	5.177715	5.65745	0.088901	0.00330348	0.183874	0.0323993
chr21	41830523	41830622	7673627	0	-	0.414141	(0.39,0.419]	chr21	801978	18	INTRON	INTRON	PRDM15	ENSG00000141956.14	ENST00000422911.6:ENST00000441787.5:ENST00000449395.6:ENST00000398548.6:ENST00000447016.6:ENST00000269844.5:ENST00000491486.5:ENST00000489661.5:ENST00000496124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	58	2	4.69798	5.177715	5.65745	0.088901	0.00330348	0.183874	0.0323993
chr11	70947308	70947408	5063764	0	-	0.38	(0.36,0.39]	chr11	492740	504	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000618363.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	58	2	4.86249	5.177365	5.49224	0.0304242	0.0181775	0.11845	0.0955836
chrX	19653737	19653837	7990565	0	-	0.38	(0.36,0.39]	chrX	836019	79	INTRON	INTRON	SH3KBP1	ENSG00000147010.18	ENST00000397821.8:ENST00000379716.5:ENST00000379698.8:ENST00000379726.7:ENST00000379697.7:ENST00000494961.5:ENST00000477102.1:ENST00000432234.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	4.86249	5.177365	5.49224	0.0304242	0.0181775	0.11845	0.0955836
chr10	18571257	18571357	4642441	0	-	0.44	(0.419,0.45]	chr10	443321	189	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	128	2	4.07217	5.17711	6.28205	0.0102557	0.00262794	0.0684871	0.027842
chr6	16619815	16619915	3103037	0	-	0.42	(0.419,0.45]	chr6	300871	33	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6:ENST00000495178.1:ENST00000646259.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	128	2	4.07217	5.17711	6.28205	0.0102557	0.00262794	0.0684871	0.027842
chr1	17677981	17678081	54991	0	+	0.66	(0.58,1]	chr1	5603	130	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	54	2	4.95814	5.1768	5.39546	0.0168207	0.0074469	0.0884836	0.0553519
chr11	70744482	70744582	5061726	0	-	0.6	(0.58,1]	chr11	492701	266	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	4.95814	5.1768	5.39546	0.0168207	0.0074469	0.0884836	0.0553519
chr9	134369973	134370073	4261123	0	+	0.61	(0.58,1]	chr9	406311	430	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	4.95814	5.1768	5.39546	0.0168207	0.0074469	0.0884836	0.0553519
chr6	158244093	158244193	3060956	0	+	0.5	(0.485,0.523]	chr6	297572	114	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	161	2	3.71003	5.1767900000000004	6.64355	0.00320229	0.00155822	0.0361639	0.0193979
chr2	10367677	10367777	719076	0	+	0.54	(0.523,0.58]	chr2	84032	129	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	199	2	3.37296	5.17653	6.9801	0.0132191	5.12704e-5	0.0786582	0.00167326
chr3	66499593	66499689	1817110	0	-	0.5	(0.485,0.523]	chr3	187447	15	INTRON	INTRON	LRIG1	ENSG00000144749.14	ENST00000273261.8:ENST00000383703.3:ENST00000498287.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	123	2	3.83677	5.17647	6.51617	0.00406194	0.00360381	0.0413652	0.0342681
chr1	43563309	43563409	107072	0	+	0.55	(0.523,0.58]	chr1	13192	90	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	123	2	3.8181	5.1763699999999995	6.53464	0.00395533	0.0037097	0.0406092	0.0349741
chr9	91420454	91420553	4334183	0	-	0.494949	(0.485,0.523]	chr9	414047	92	INTRON	INTRON	NFIL3	ENSG00000165030.4	ENST00000297689.4	protein_coding	protein_coding	protein_coding	protein_coding	1	120	2	4.17794	5.1761	6.17426	0.00754939	0.0014639	0.0578091	0.0185482
chr5	652687	652787	2378809	0	+	0.55	(0.523,0.58]	chr5	237647	3	SS3_PROX	SS3_PROX:INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	55	2	5.08882	5.17607	5.26332	0.0337698	0.00834774	0.124319	0.0598672
chr17	57467303	57467403	6761885	0	+	0.4	(0.39,0.419]	chr17	682137	222	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	252	2	3.78401	5.17603	6.56805	0.00553508	6.147e-4	0.0491917	0.0101103
chr1	205746272	205746372	648791	0	-	0.33	(0.29,0.33]	chr1	76905	151	INTRON	INTRON	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.91217	5.175855	5.43954	0.0522244	0.00401582	0.148503	0.0371286
chr10	29481041	29481140	4471118	0	+	0.474747	(0.45,0.485]	chr10	427764	121	INTRON	INTRON	SVIL-AS1	ENSG00000224597.11	ENST00000684815.1:ENST00000413405.6:ENST00000646086.2:ENST00000423223.6:ENST00000414457.6:ENST00000687838.1:ENST00000446807.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	63	2	4.50852	5.175549999999999	5.84258	0.0302873	0.0151085	0.126768	0.0841543
chr17	29116655	29116755	6876315	0	-	0.61	(0.58,1]	chr17	697937	2	SS3_PROX	SS3_PROX:INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000588791.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	133	2	3.95688	5.175385	6.39389	0.00681628	1.38027e-4	0.0548279	0.00347229
chr19	15642212	15642311	7215375	0	+	0.545455	(0.523,0.58]	chr19	737133	2	INTRON	INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	176	2	4.61466	5.175375	5.73609	0.00290852	0.0017613	0.0342042	0.0211077
chr10	63317507	63317607	4698594	0	-	0.37	(0.36,0.39]	chr10	447731	484	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	154	2	3.49227	5.175365	6.85846	0.0260212	1.4518e-4	0.109673	0.00359568
chr11	70791646	70791746	5062198	0	-	0.52	(0.485,0.523]	chr11	492701	738	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	4.90542	5.175155	5.44489	0.0561086	0.00377098	0.154188	0.0353672
chr5	80709119	80709218	2466539	0	+	0.383838	(0.36,0.39]	chr5	246431	297	INTRON	INTRON	MSH3	ENSG00000113318.11	ENST00000265081.7:ENST00000670357.1:ENST00000667069.1:ENST00000658259.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	4.94194	5.175115	5.40829	0.064883	0.00581205	0.162218	0.0472624
chr5	148392818	148392917	2562857	0	+	0.383838	(0.36,0.39]	chr5	254487	29	INTRON	INTRON	FBXO38	ENSG00000145868.17	ENST00000296701.10:ENST00000503613.5:ENST00000340253.10:ENST00000394370.7:ENST00000508326.5:ENST00000509411.5:ENST00000511080.5:ENST00000504971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	56	2	4.94194	5.175115	5.40829	0.064883	0.00581205	0.162218	0.0472624
chr1	10155057	10155157	23594	0	+	0.46	(0.45,0.485]	chr1	2617	31	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.06138	5.17492	5.28846	0.0492008	0.00612862	0.146142	0.0489549
chr1	27473897	27473997	431090	0	-	0.48	(0.45,0.485]	chr1	50973	446	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.06138	5.17492	5.28846	0.0492008	0.00612862	0.146142	0.0489549
chr16	85236565	85236665	6515434	0	+	0.55	(0.523,0.58]	chr16	646377	88	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	58	2	4.7629	5.17485	5.5868	0.020474	0.0167014	0.0979776	0.0917029
chr19	4334244	4334344	7312813	0	-	0.53	(0.523,0.58]	chr19	754659	2	SS3_PROX	SS3_PROX:INTRON	STAP2	ENSG00000178078.12	ENST00000594605.6:ENST00000600324.5:ENST00000599736.5:ENST00000601482.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	58	2	4.7629	5.17485	5.5868	0.020474	0.0167014	0.0979776	0.0917029
chr13	20496993	20497093	5662810	0	-	0.48	(0.45,0.485]	chr13	556208	71	INTRON	INTRON	CRYL1	ENSG00000165475.15	ENST00000643035.1:ENST00000644593.1:ENST00000298248.12:ENST00000644872.1:ENST00000382812.5:ENST00000643750.1:ENST00000644153.1:ENST00000643887.1:ENST00000644167.1:ENST00000646414.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	55	2	5.1123	5.174825	5.23735	0.0458344	0.00687715	0.142336	0.0526888
chr20	348662	348748	7414004	0	+	0.453488	(0.45,0.485]	chr20	772227	3	SS5_PROX	SS5_PROX:INTRON	NRSN2	ENSG00000125841.13	ENST00000609179.5:ENST00000492242.5:ENST00000382291.7:ENST00000609504.5:ENST00000382285.7:ENST00000608467.5:ENST00000470439.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	5.1123	5.174825	5.23735	0.0458344	0.00687715	0.142336	0.0526888
chr7	27530891	27530991	3560254	0	-	0.46	(0.45,0.485]	chr7	343775	3	SS5_PROX	SS5_PROX:INTRON	HIBADH	ENSG00000106049.9	ENST00000265395.7:ENST00000428288.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	5.1123	5.174825	5.23735	0.0458344	0.00687715	0.142336	0.0526888
chr7	72733118	72733218	3599906	0	-	0.46	(0.45,0.485]	chr7	347168	38	INTRON	INTRON	TYW1B	ENSG00000277149.5	ENST00000612372.4:ENST00000620995.5:ENST00000610600.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.1123	5.174825	5.23735	0.0458344	0.00687715	0.142336	0.0526888
chr14	90274843	90274942	6032140	0	-	0.373737	(0.36,0.39]	chr14	591598	71	UTR3	UTR3:EXON_MRNA	NRDE2	ENSG00000119720.18	ENST00000354366.8	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.10608	5.174625000000001	5.24317	0.0433841	0.0111429	0.138813	0.071709
chr10	116726026	116726126	4766137	0	-	0.52	(0.485,0.523]	chr10	455790	179	INTRON	INTRON	HSPA12A	ENSG00000165868.16	ENST00000635765.1:ENST00000369209.8:ENST00000674197.1:ENST00000674401.1:ENST00000674505.1:ENST00000674167.1:ENST00000674205.1:ENST00000674394.1:ENST00000674347.1:ENST00000674459.1:ENST00000674344.1:ENST00000674491.1:ENST00000674372.1:ENST00000674375.1:ENST00000481291.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	55	2	5.08528	5.1745149999999995	5.26375	0.0335928	0.0086528	0.124319	0.0612699
chr17	40826558	40826658	6734822	0	+	0.49	(0.485,0.523]	chr17	677416	69	INTRON	INTRON	KRT10-AS1	ENSG00000167920.11	ENST00000436612.5:ENST00000301665.8:ENST00000668620.1:ENST00000692645.1:ENST00000666187.1:ENST00000654043.1:ENST00000662074.1	lncRNA	lncRNA	lncRNA	lncRNA	0	55	2	5.08528	5.1745149999999995	5.26375	0.0335928	0.0086528	0.124319	0.0612699
chr3	100021921	100022021	1519167	0	+	0.5	(0.485,0.523]	chr3	161654	98	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	55	2	5.08528	5.1745149999999995	5.26375	0.0335928	0.0086528	0.124319	0.0612699
chr9	123525992	123526092	4397836	0	-	0.51	(0.485,0.523]	chr9	419652	400	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	5.08528	5.1745149999999995	5.26375	0.0335928	0.0086528	0.124319	0.0612699
chr17	7110862	7110961	6847742	0	-	0.575758	(0.523,0.58]	chr17	693423	16	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	198	2	3.21923	5.17431	7.12939	0.0173863	3.23178e-5	0.0901374	0.00118877
chr15	64989405	64989455	6301670	0	-	0.66	(0.58,1]	chr15	621085	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SPG21	ENSG00000090487.11	ENST00000204566.7:ENST00000433215.6:ENST00000561078.5:ENST00000416889.6:ENST00000558765.5:ENST00000557795.5:ENST00000560564.1:ENST00000559677.5:ENST00000558415.5:ENST00000558339.1:ENST00000561088.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	115	2	3.82654	5.17426	6.52198	0.00275362	0.00186556	0.0285628	0.0269723
chr7	40055052	40055151	3353387	0	+	0.292929	(0.29,0.33]	chr7	324218	60	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1:ENST00000484589.2:ENST00000643915.1:ENST00000645470.1:ENST00000642592.1	protein_coding	protein_coding	protein_coding	protein_coding	1	127	2	3.66355	5.17422	6.68489	0.00571018	0.00260436	0.0467736	0.0323362
chr8	143607132	143607232	4097293	0	-	0.65	(0.58,1]	chr8	389388	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PYCR3	ENSG00000104524.14	ENST00000495276.6:ENST00000220966.10:ENST00000447926.6:ENST00000433751.5:ENST00000377579.7:ENST00000462036.5:ENST00000482616.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	53	2	4.88945	5.174085	5.45872	0.0388928	0.00211999	0.131324	0.0239744
chr12	2984441	2984541	5157928	0	+	0.43	(0.419,0.45]	chr12	501258	237	INTRON	INTRON	TEAD4	ENSG00000197905.10	ENST00000358409.7:ENST00000359864.8:ENST00000540314.2:ENST00000536826.2:ENST00000543035.6:ENST00000397122.6:ENST00000443986.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	5.09133	5.1737400000000004	5.25615	0.0586308	0.00879729	0.155565	0.0615125
chr18	62267342	62267435	7078247	0	+	0.27957	[0,0.29]	chr18	721714	2	INTRON	INTRON	RELCH	ENSG00000134444.15	ENST00000644646.2:ENST00000256858.10:ENST00000398130.6:ENST00000587725.5:ENST00000588446.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	0	54	2	4.88286	5.173674999999999	5.46449	0.041613	0.00299691	0.136301	0.030427
chr7	139703244	139703344	3723178	0	-	0.5	(0.485,0.523]	chr7	357498	712	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	1	145	2	3.72524	5.17345	6.62166	0.0150536	1.59261e-4	0.0840434	0.00385073
chr1	180695403	180695503	297028	0	+	0.5	(0.485,0.523]	chr1	33791	126	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.65198	5.173375	5.69477	0.0783889	0.00203227	0.175203	0.0232814
chr12	116839764	116839864	5335862	0	+	0.59	(0.58,1]	chr12	520799	31	INTRON	INTRON	RNFT2	ENSG00000135119.15	ENST00000407967.7:ENST00000392549.7:ENST00000257575.9:ENST00000547718.5:ENST00000551251.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	53	2	5.08534	5.173360000000001	5.26138	0.021217	0.00549379	0.0996078	0.0454065
chr22	47042192	47042292	7747820	0	+	0.64	(0.58,1]	chr22	812250	46	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	5.08534	5.173360000000001	5.26138	0.021217	0.00549379	0.0996078	0.0454065
chr8	143486846	143486946	4096461	0	-	0.65	(0.58,1]	chr8	389272	15	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6:ENST00000528401.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.08534	5.173360000000001	5.26138	0.021217	0.00549379	0.0996078	0.0454065
chr5	139658954	139659054	2549750	0	+	0.55	(0.523,0.58]	chr5	253168	74	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.83424	5.173355000000001	5.51247	0.0230387	0.0144272	0.102982	0.0833845
chr6	349639	349738	2824331	0	+	0.494949	(0.485,0.523]	chr6	277235	8	UTR3	UTR3:EXON_MRNA:INTRON	DUSP22	ENSG00000112679.15	ENST00000344450.9:ENST00000419235.7:ENST00000603726.5:ENST00000604971.5:ENST00000604988.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	59	2	4.50634	5.17324	5.84014	0.0939553	0.00139792	0.188571	0.0179863
chr4	78873692	78873791	2072418	0	+	0.494949	(0.485,0.523]	chr4	211741	5	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5:ENST00000507670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	120	2	4.2464	5.173220000000001	6.10004	0.00860355	0.00121376	0.0623467	0.0162693
chr6	4921012	4921111	2832025	0	+	0.454545	(0.45,0.485]	chr6	277809	283	INTRON	INTRON	CDYL	ENSG00000153046.18	ENST00000328908.9:ENST00000440139.5:ENST00000397588.8:ENST00000472453.5:ENST00000449732.6:ENST00000343762.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	5.00859	5.1732	5.33781	0.052901	0.0054758	0.14912	0.0454065
chr11	68422292	68422391	4883193	0	+	0.555556	(0.523,0.58]	chr11	470622	54	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	64	2	4.43597	5.17297	5.90997	0.0313935	0.012016	0.127822	0.0743424
chr12	3082252	3082352	5158591	0	+	0.55	(0.523,0.58]	chr12	501331	44	INTRON	INTRON	TSPAN9	ENSG00000011105.14	ENST00000537971.5:ENST00000444315.6:ENST00000011898.10:ENST00000649909.1:ENST00000539631.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	64	2	4.43597	5.17297	5.90997	0.0313935	0.012016	0.127822	0.0743424
chr1	149538443	149538533	239020	0	+	0.444444	(0.419,0.45]	chr1	26862	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF19	ENSG00000271383.8	ENST00000651566.2:ENST00000611931.4:ENST00000612881.4:ENST00000369227.7	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.04043	5.172955	5.30548	0.0625897	0.00792071	0.160305	0.057762
chr4	73412176	73412227	2056922	0	+	0.431373	(0.419,0.45]	chr4	210247	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ALB	ENSG00000163631.17	ENST00000621628.4:ENST00000295897.9:ENST00000415165.6:ENST00000621085.4:ENST00000503124.5:ENST00000476441.6:ENST00000509063.5:ENST00000401494.7:ENST00000505649.5:ENST00000511370.1:ENST00000507673.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	56	2	5.04043	5.172955	5.30548	0.0625897	0.00792071	0.160305	0.057762
chr4	185261054	185261154	2171506	0	+	0.45	(0.419,0.45]	chr4	219954	16	INTRON	INTRON	SNX25	ENSG00000109762.17	ENST00000504273.5:ENST00000618785.4:ENST00000652585.2:ENST00000264694.13:ENST00000506896.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	5.04043	5.172955	5.30548	0.0625897	0.00792071	0.160305	0.057762
chr9	93662309	93662406	4184521	0	+	0.43299	(0.419,0.45]	chr9	397767	14	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.04043	5.172955	5.30548	0.0625897	0.00792071	0.160305	0.057762
chr1	44240323	44240422	459574	0	-	0.484848	(0.45,0.485]	chr1	55299	76	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	55	2	5.16149	5.172935	5.18438	0.0427653	0.00773818	0.13762	0.0568726
chr9	123035537	123035637	4234772	0	+	0.47	(0.45,0.485]	chr9	401984	14	INTRON	INTRON	RABGAP1	ENSG00000011454.18	ENST00000456584.5:ENST00000373647.9:ENST00000493854.5:ENST00000475607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	55	2	5.16149	5.172935	5.18438	0.0427653	0.00773818	0.13762	0.0568726
chr18	76423660	76423760	7179356	0	-	0.54	(0.523,0.58]	chr18	730080	430	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	1	145	2	3.62324	5.172865	6.72249	0.0180195	1.11891e-4	0.0921579	0.00298349
chr17	40826160	40826259	6734818	0	+	0.444444	(0.419,0.45]	chr17	677416	65	INTRON	INTRON	KRT10-AS1	ENSG00000167920.11	ENST00000436612.5:ENST00000301665.8:ENST00000668620.1:ENST00000692645.1:ENST00000666187.1:ENST00000654043.1:ENST00000662074.1	lncRNA	lncRNA	lncRNA	lncRNA	0	56	2	5.1405	5.17279	5.20508	0.0550015	0.00979452	0.153337	0.0664239
chr2	200360752	200360852	986500	0	+	0.4	(0.39,0.419]	chr2	108296	91	INTRON	INTRON	SPATS2L	ENSG00000196141.14	ENST00000439084.5:ENST00000409718.5:ENST00000358677.9:ENST00000409988.7:ENST00000409385.5:ENST00000439395.5:ENST00000444012.5:ENST00000451764.6:ENST00000360760.9:ENST00000423749.5:ENST00000457757.5:ENST00000471601.5:ENST00000428692.5:ENST00000453663.5:ENST00000409140.8:ENST00000459656.5:ENST00000471533.5:ENST00000409397.6:ENST00000619961.4:ENST00000409151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	135	2	4.64221	5.17271	5.70321	0.0226065	5.53192e-4	0.102982	0.00941492
chr6	110406244	110406343	3232270	0	-	0.434343	(0.419,0.45]	chr6	313362	9	INTRON	INTRON	DDO	ENSG00000203797.12	ENST00000368923.8:ENST00000479373.1:ENST00000368924.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	4.98054	5.172245	5.36395	0.0407485	0.0154548	0.135868	0.0869771
chr1	12585541	12585640	402458	0	-	0.636364	(0.58,1]	chr1	46222	45	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	654	2	4.6505	5.172205	5.69391	4.64229e-5	2.26776e-5	0.00375546	9.21511e-4
chr8	100715161	100715261	4029364	0	-	0.28	[0,0.29]	chr8	384713	3	SS5_PROX	SS5_PROX:INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000519596.5:ENST00000519622.5:ENST00000517921.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	118	2	4.45551	5.172105	5.8887	0.00739414	5.81832e-4	0.0573244	0.00971143
chr10	18561964	18562064	4642348	0	-	0.4	(0.39,0.419]	chr10	443321	96	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	4.48504	5.1720299999999995	5.85902	0.0364893	0.0177874	0.139793	0.0914273
chr20	64272230	64272330	7511235	0	+	0.41	(0.39,0.419]	chr20	783909	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609818.1:ENST00000266078.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	64	2	4.48504	5.1720299999999995	5.85902	0.0364893	0.0177874	0.139793	0.0914273
chr10	18568459	18568559	4642413	0	-	0.39	(0.36,0.39]	chr10	443321	161	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	157	2	3.99944	5.1719550000000005	6.34447	0.0112853	5.89187e-4	0.0722436	0.00981079
chr1	48226477	48226575	120964	0	+	0.622449	(0.58,1]	chr1	15165	13	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	112	2	4.44822	5.1718150000000005	5.89541	0.0066708	4.4502e-4	0.0540577	0.00806076
chr14	68898290	68898388	5999322	0	-	0.438776	(0.419,0.45]	chr14	588704	42	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	59	2	4.78575	5.17157	5.55739	0.0310506	0.0224633	0.119758	0.108193
chr16	29268714	29268814	6433524	0	+	0.42	(0.419,0.45]	chr16	636745	166	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	59	2	4.78575	5.17157	5.55739	0.0310506	0.0224633	0.119758	0.108193
chr1	148105680	148105767	581399	0	-	0.436782	(0.419,0.45]	chr1	66697	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF11	ENSG00000263956.8	ENST00000614015.4:ENST00000615281.4:ENST00000682118.1:ENST00000614506.4:ENST00000613531.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	60	2	4.7145	5.171275	5.62805	0.0280406	0.0256236	0.115966	0.113651
chr2	216184029	216184128	1024058	0	+	0.333333	(0.33,0.36]	chr2	111645	216	INTRON	INTRON	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	129	2	4.53261	5.171250000000001	5.80989	0.0164265	6.75978e-4	0.0877406	0.0108163
chr12	10940161	10940261	5370284	0	-	0.34	(0.33,0.36]	chr12	526802	10	INTRON	INTRON	ENSG00000275778:PRH1:TAS2R14	ENSG00000275778.2:ENSG00000231887.8:ENSG00000212127.6	ENST00000536668.2:ENST00000535024.6:ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000546317.1:ENST00000381852.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	56	2	4.83538	5.17117	5.50696	0.0679743	0.00418696	0.164413	0.0379935
chr17	12095894	12095994	6680632	0	+	0.35	(0.33,0.36]	chr17	670611	2	SS5_PROX	SS5_PROX:INTRON	MAP2K4	ENSG00000065559.15	ENST00000582183.5:ENST00000415385.7:ENST00000602305.5:ENST00000602375.5:ENST00000602811.5:ENST00000353533.10:ENST00000602537.5:ENST00000602686.5:ENST00000538465.7:ENST00000581941.5:ENST00000579089.5:ENST00000582377.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	56	2	4.83538	5.17117	5.50696	0.0679743	0.00418696	0.164413	0.0379935
chr9	77401342	77401441	4172262	0	+	0.333333	(0.33,0.36]	chr9	396641	51	INTRON	INTRON	VPS13A	ENSG00000197969.14	ENST00000376636.7:ENST00000360280.8:ENST00000484581.6:ENST00000376646.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	4.83538	5.17117	5.50696	0.0679743	0.00418696	0.164413	0.0379935
chr17	7110076	7110174	6847734	0	-	0.530612	(0.523,0.58]	chr17	693423	8	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	831	2	4.78445	5.17113	5.55781	5.44096e-4	2.22315e-6	0.0136434	1.79504e-4
chr19	950199	950299	7185348	0	+	0.66	(0.58,1]	chr19	730741	171	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	439	2	4.93013	5.1709499999999995	5.41177	2.74845e-4	8.41759e-6	0.00943643	4.54808e-4
chrX	132484854	132484954	8111457	0	-	0.47	(0.45,0.485]	chrX	845460	442	INTRON	INTRON	MBNL3	ENSG00000076770.15	ENST00000370853.8:ENST00000370844.5:ENST00000436215.5:ENST00000421707.1	protein_coding	protein_coding	protein_coding	protein_coding	1	159	2	5.1123	5.1706900000000005	5.22908	0.0458344	7.8777e-5	0.142336	0.0022885
chr11	70818463	70818563	5062468	0	-	0.45	(0.419,0.45]	chr11	492713	109	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	4.98767	5.17042	5.35317	0.0669167	0.00714797	0.16272	0.0541241
chr8	132843561	132843655	3923619	0	+	0.43617	(0.419,0.45]	chr8	374680	3	INTRON	INTRON	PHF20L1	ENSG00000129292.21	ENST00000622263.4:ENST00000220847.8:ENST00000395386.7:ENST00000395390.6:ENST00000460236.5:ENST00000477051.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	56	2	4.98767	5.17042	5.35317	0.0669167	0.00714797	0.16272	0.0541241
chr10	67946400	67946500	4701315	0	-	0.35	(0.33,0.36]	chr10	447827	49	INTRON	INTRON	HERC4	ENSG00000148634.16	ENST00000277817.10:ENST00000373700.9:ENST00000412272.6:ENST00000395198.7:ENST00000473533.6:ENST00000427635.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	4.99985	5.170335	5.34082	0.0338211	0.0127452	0.124319	0.0773423
chr5	10739831	10739930	2612435	0	-	0.343434	(0.33,0.36]	chr5	260258	52	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5:ENST00000510546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	56	2	4.99985	5.170335	5.34082	0.0338211	0.0127452	0.124319	0.0773423
chr11	70631129	70631229	5060584	0	-	0.59	(0.58,1]	chr11	492663	1278	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	151	2	3.48788	5.17018	6.85248	0.00208277	9.12934e-4	0.0237357	0.0180377
chr15	73708783	73708878	6150731	0	+	0.6	(0.58,1]	chr15	604959	2	SS5_PROX	SS5_PROX:INTRON	CD276	ENSG00000103855.18	ENST00000537340.6:ENST00000318424.9:ENST00000318443.10:ENST00000561213.5:ENST00000560928.5:ENST00000564751.5:ENST00000561176.5:ENST00000559073.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	111	2	4.0743	5.17014	6.26598	0.00318361	0.00136577	0.0360488	0.0176851
chr10	76104074	76104174	4527214	0	+	0.42	(0.419,0.45]	chr10	432311	449	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	5.15214	5.17009	5.18804	0.051668	0.0109324	0.148503	0.0706366
chr12	101365058	101365158	5307290	0	+	0.42	(0.419,0.45]	chr12	516951	2	SS3_PROX	SS3_PROX:INTRON	UTP20	ENSG00000120800.5	ENST00000261637.5	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.15214	5.17009	5.18804	0.051668	0.0109324	0.148503	0.0706366
chr3	10238147	10238247	1407269	0	+	0.42	(0.419,0.45]	chr3	151190	31	INTRON	INTRON	IRAK2	ENSG00000134070.5	ENST00000256458.5	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.15214	5.17009	5.18804	0.051668	0.0109324	0.148503	0.0706366
chr7	6698693	6698789	3542699	0	-	0.4375	(0.419,0.45]	chr7	342314	5	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000404360.5:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.15214	5.17009	5.18804	0.051668	0.0109324	0.148503	0.0706366
chr20	57397928	57398028	7496754	0	+	0.42	(0.419,0.45]	chr20	781791	42	INTRON	INTRON	RBM38	ENSG00000132819.17	ENST00000356208.10:ENST00000440234.6:ENST00000342690.4:ENST00000344785.10:ENST00000371219.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	58	2	4.69033	5.169685	5.64904	0.0958674	0.00368884	0.189038	0.0348088
chr7	2440284	2440384	3308906	0	+	0.54	(0.523,0.58]	chr7	320715	65	UTR3	UTR3:EXON_MRNA:INTRON	CHST12	ENSG00000136213.10	ENST00000258711.7:ENST00000618655.2:ENST00000313156.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	148	2	4.00257	5.169675	6.33678	0.0092178	3.44853e-4	0.0644666	0.00672121
chr8	9775757	9775855	3754936	0	+	0.397959	(0.39,0.419]	chr8	360888	30	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.92679	5.169665	5.41254	0.0347088	0.0160946	0.12648	0.0896852
chr21	33530268	33530365	7652593	0	-	0.371134	(0.36,0.39]	chr21	800670	1	SS5_PROX	SS5_PROX:INTRON	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000361093.9:ENST00000366093.6:ENST00000466882.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	143	2	4.84697	5.169605	5.49224	0.0304242	3.12014e-4	0.11845	0.00625316
chr22	50279224	50279320	7827583	0	-	0.541667	(0.523,0.58]	chr22	821358	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PLXNB2	ENSG00000196576.16	ENST00000359337.9:ENST00000449103.5:ENST00000479701.5:ENST00000463165.1:ENST00000411680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	56	2	4.71922	5.16949	5.61976	0.0721601	0.00236826	0.168159	0.0259199
chr10	75481005	75481105	4520968	0	+	0.52	(0.485,0.523]	chr10	432249	294	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	1	120	2	4.29031	5.16933	6.04835	0.00941539	0.00107516	0.0653252	0.0148869
chr20	58447618	58447717	7498136	0	+	0.454545	(0.45,0.485]	chr20	781915	35	UTR3	UTR3:EXON_MRNA	VAPB	ENSG00000124164.16	ENST00000475243.6	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.12938	5.16922	5.20906	0.0399616	0.00873194	0.133954	0.0612699
chr21	15031423	15031523	7640676	0	-	0.48	(0.45,0.485]	chr21	799117	166	INTRON	INTRON	NRIP1	ENSG00000180530.11	ENST00000400202.5:ENST00000318948.7:ENST00000400199.5:ENST00000638122.1:ENST00000637963.1:ENST00000637630.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	5.12938	5.16922	5.20906	0.0399616	0.00873194	0.133954	0.0612699
chr14	104779887	104779987	6057689	0	-	0.69	(0.58,1]	chr14	594700	4	SS5_PROX	SS5_PROX:INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000683722.1:ENST00000555528.5:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000554848.5:ENST00000682269.1:ENST00000555380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	56	2	4.74346	5.168965	5.59447	0.0121457	0.0117666	0.0754623	0.0737098
chr4	4426613	4426712	2184855	0	-	0.585859	(0.58,1]	chr4	221811	1	INTRON	INTRON	STX18	ENSG00000168818.10	ENST00000505286.5:ENST00000306200.7:ENST00000503861.5:ENST00000512195.5:ENST00000507908.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	4.74346	5.168965	5.59447	0.0121457	0.0117666	0.0754623	0.0737098
chr1	9356985	9357085	20226	0	+	0.47	(0.45,0.485]	chr1	2216	4	SS5_PROX	SS5_PROX:INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11:ENST00000357898.3:ENST00000377399.2	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.77571	5.16887	5.56203	0.0719884	0.00322991	0.168159	0.0319521
chr16	50155458	50155558	6448416	0	+	0.48	(0.45,0.485]	chr16	639560	8	INTRON	INTRON	TENT4B	ENSG00000121274.14	ENST00000436909.8:ENST00000561678.7:ENST00000562717.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	4.77571	5.16887	5.56203	0.0719884	0.00322991	0.168159	0.0319521
chr20	45026328	45026428	7485764	0	+	0.36	(0.33,0.36]	chr20	780008	8	INTRON	INTRON	STK4	ENSG00000101109.12	ENST00000499879.6:ENST00000372806.8:ENST00000372801.5	protein_coding	protein_coding	protein_coding	protein_coding	1	149	2	3.6082	5.16887	6.72954	0.0200207	1.75295e-4	0.0971059	0.00411175
chr21	46277226	46277326	7681010	0	-	0.48	(0.45,0.485]	chr21	803289	3	SS5_PROX	SS5_PROX:INTRON	MCM3AP	ENSG00000160294.11	ENST00000397708.1:ENST00000291688.6	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.77571	5.16887	5.56203	0.0719884	0.00322991	0.168159	0.0319521
chr17	75977638	75977737	6974011	0	-	0.414141	(0.39,0.419]	chr17	711682	35	INTRON	INTRON	ACOX1	ENSG00000161533.12	ENST00000293217.10:ENST00000572047.5:ENST00000573078.5:ENST00000301608.8:ENST00000591857.5:ENST00000588176.5:ENST00000589301.1:ENST00000576743.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	127	2	4.31149	5.168835	6.02618	0.0136549	0.00134114	0.0798074	0.0174212
chr1	43704752	43704848	108300	0	+	0.520833	(0.485,0.523]	chr1	13477	5	UTR3	UTR3:EXON_MRNA	KDM4A	ENSG00000066135.13	ENST00000372396.4	protein_coding	protein_coding	protein_coding	protein_coding	2	163	2	4.00372	5.168805000000001	6.33389	0.00567224	6.77954e-4	0.0496143	0.0108407
chr11	70809269	70809369	5062376	0	-	0.55	(0.523,0.58]	chr11	492713	17	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	5.02927	5.16861	5.30795	0.0315825	0.0095202	0.120781	0.0650078
chr7	47472310	47472410	3588531	0	-	0.55	(0.523,0.58]	chr7	346123	192	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.02927	5.16861	5.30795	0.0315825	0.0095202	0.120781	0.0650078
chr7	55445358	55445457	3591345	0	-	0.30303	(0.29,0.33]	chr7	346401	88	INTRON	INTRON	VOPP1	ENSG00000154978.13	ENST00000462326.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	55	2	4.85285	5.16858	5.48431	0.0567079	0.00360762	0.154343	0.0342681
chr22	38202609	38202702	7724317	0	+	0.72043	(0.58,1]	chr22	809111	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MAFF	ENSG00000185022.12	ENST00000624676.1:ENST00000538999.1:ENST00000538320.5:ENST00000338483.7:ENST00000441709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	55	2	4.81862	5.168375	5.51813	0.013519	0.0102696	0.0792526	0.0678072
chr22	46616085	46616185	7744336	0	+	0.59	(0.58,1]	chr22	812034	384	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000447351.5:ENST00000431155.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.81862	5.168375	5.51813	0.013519	0.0102696	0.0792526	0.0678072
chr4	99928453	99928541	2289680	0	-	0.443182	(0.419,0.45]	chr4	230438	8	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DNAJB14	ENSG00000164031.17	ENST00000442697.7:ENST00000420137.5:ENST00000334223.6:ENST00000398991.3:ENST00000426476.5:ENST00000474664.5:ENST00000493110.1:ENST00000471738.1:ENST00000469942.1:ENST00000610281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	58	2	4.85365	5.168375	5.4831	0.0345118	0.0197641	0.126025	0.100774
chr10	79109324	79109424	4532448	0	+	0.58	(0.523,0.58]	chr10	432420	397	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.90222	5.168165	5.43411	0.026041	0.0125132	0.109673	0.0765738
chr9	105294798	105294898	4206098	0	+	0.34	(0.33,0.36]	chr9	399476	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SLC44A1	ENSG00000070214.16	ENST00000374724.1:ENST00000374723.5:ENST00000470972.5:ENST00000374720.8:ENST00000607692.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	63	2	4.49588	5.168125	5.84037	0.033477	0.0156381	0.133139	0.0850479
chr15	64987071	64987171	6301642	0	-	0.41	(0.39,0.419]	chr15	621074	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SPG21	ENSG00000090487.11	ENST00000204566.7:ENST00000433215.6:ENST00000561078.5:ENST00000416889.6:ENST00000558765.5:ENST00000557795.5:ENST00000560564.1:ENST00000559677.5:ENST00000558943.5:ENST00000558415.5:ENST00000560878.1:ENST00000558339.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	56	2	4.88366	5.1680600000000005	5.45246	0.0707789	0.00529344	0.168159	0.044517
chr2	168058508	168058608	1307950	0	-	0.4	(0.39,0.419]	chr2	140195	411	INTRON	INTRON	STK39	ENSG00000198648.11	ENST00000487143.5:ENST00000355999.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	4.88366	5.1680600000000005	5.45246	0.0707789	0.00529344	0.168159	0.044517
chr5	168566666	168566766	2808701	0	-	0.31	(0.29,0.33]	chr5	275080	4	SS3_PROX	SS3_PROX:INTRON	PANK3	ENSG00000120137.7	ENST00000239231.7:ENST00000522176.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.02042	5.1678	5.31518	0.0288318	0.0103902	0.116067	0.0682598
chrX	44531232	44531331	8035894	0	-	0.464646	(0.45,0.485]	chrX	838192	35	INTRON	INTRON	FUNDC1	ENSG00000069509.6	ENST00000378045.5:ENST00000483115.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	4.95056	5.167795	5.38503	0.0308908	0.0127826	0.119556	0.0773423
chr12	79680186	79680286	5461995	0	-	0.44	(0.419,0.45]	chr12	537130	114	INTRON	INTRON	PAWR	ENSG00000177425.11	ENST00000328827.9:ENST00000551712.1:ENST00000550006.1:ENST00000547571.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	61	2	4.63955	5.167475	5.6954	0.0293406	0.0254103	0.125102	0.108573
chr14	104720483	104720581	5925631	0	+	0.571429	(0.523,0.58]	chr14	579884	18	UTR3	UTR3:EXON_MRNA	INF2	ENSG00000203485.14	ENST00000330634.11:ENST00000392634.9:ENST00000675207.1:ENST00000675638.1	protein_coding	protein_coding	protein_coding	protein_coding	1	125	2	3.69181	5.167465	6.64312	0.00510333	0.00323048	0.0433857	0.0362983
chr5	62553335	62553435	2430952	0	+	0.41	(0.39,0.419]	chr5	242260	16	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7:ENST00000511713.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	5.04836	5.167395	5.28643	0.041475	0.0126072	0.136301	0.0768036
chr11	58598753	58598853	4858367	0	+	0.34	(0.33,0.36]	chr11	465296	135	INTRON	INTRON	ZFP91	ENSG00000186660.15	ENST00000316059.7	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.0592	5.1673849999999995	5.27557	0.0504445	0.00707628	0.148216	0.0540197
chr8	25340278	25340376	3775666	0	+	0.336735	(0.33,0.36]	chr8	363597	36	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000444569.5:ENST00000467709.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	5.0592	5.1673849999999995	5.27557	0.0504445	0.00707628	0.148216	0.0540197
chrX	108599465	108599560	7932501	0	+	0.326316	(0.29,0.33]	chrX	830179	2	INTRON	INTRON	COL4A5	ENSG00000188153.14	ENST00000328300.11:ENST00000361603.7:ENST00000483338.1	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.89341	5.16738	5.44135	0.0236557	0.0135896	0.105002	0.0811697
chr6	158026369	158026468	3059756	0	+	0.676768	(0.58,1]	chr6	297373	82	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	1	111	2	4.04556	5.16735	6.28914	0.00303562	0.00148416	0.0350226	0.0186585
chr13	50091645	50091744	5593508	0	+	0.484848	(0.45,0.485]	chr13	551518	78	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000469754.3:ENST00000655550.1:ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000659280.2	lncRNA	lncRNA	lncRNA	lncRNA	1	122	2	3.9881	5.167325	6.34655	0.00642055	0.0026335	0.0529785	0.0278798
chr17	8458526	8458624	6679160	0	+	0.346939	(0.33,0.36]	chr17	670500	33	INTRON	INTRON	NDEL1	ENSG00000166579.16	ENST00000334527.12:ENST00000585098.5:ENST00000380025.8:ENST00000402554.7:ENST00000582277.5:ENST00000581679.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.11012	5.1673	5.22448	0.04702	0.00791583	0.143232	0.057762
chr21	44859862	44859962	7678433	0	-	0.33	(0.29,0.33]	chr21	802754	31	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000397886.3:ENST00000474737.5:ENST00000494690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	137	2	3.37208	5.1673	6.96252	0.0113763	0.00151134	0.0721226	0.0240218
chr3	188660603	188660703	1656877	0	+	0.35	(0.33,0.36]	chr3	173813	504	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000471917.1:ENST00000415906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	5.11012	5.1673	5.22448	0.04702	0.00791583	0.143232	0.057762
chr17	35056100	35056200	6887865	0	-	0.49	(0.485,0.523]	chr17	699061	139	INTRON	INTRON	RFFL	ENSG00000092871.17	ENST00000315249.11:ENST00000394597.7:ENST00000584655.5:ENST00000447669.6:ENST00000584541.1:ENST00000414419.6:ENST00000581265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	55	2	5.02573	5.16705	5.30837	0.0314138	0.00985879	0.12069	0.0664239
chr3	172115387	172115486	1628223	0	+	0.525253	(0.523,0.58]	chr3	170543	24	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	249	2	2.81672	5.167045	7.51737	0.00506073	5.83644e-4	0.0433107	0.0141349
chr20	4152069	4152168	7422749	0	+	0.585859	(0.58,1]	chr20	773300	27	INTRON	INTRON	SMOX	ENSG00000088826.18	ENST00000493223.1:ENST00000339123.10:ENST00000278795.7:ENST00000621355.4:ENST00000305958.9:ENST00000484515.1:ENST00000346595.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	4.82753	5.16625	5.50497	0.0427798	0.00187297	0.13762	0.0219434
chr6	520379	520479	3077344	0	-	0.66	(0.58,1]	chr6	299297	203	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.82753	5.16625	5.50497	0.0427798	0.00187297	0.13762	0.0219434
chr7	127975672	127975772	3471484	0	+	0.59	(0.58,1]	chr7	335423	261	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	4.82753	5.16625	5.50497	0.0427798	0.00187297	0.13762	0.0219434
chr8	143323898	143323998	4095567	0	-	0.63	(0.58,1]	chr8	389127	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	4.82753	5.16625	5.50497	0.0427798	0.00187297	0.13762	0.0219434
chr10	116726326	116726426	4766140	0	-	0.53	(0.523,0.58]	chr10	455790	182	INTRON	INTRON	HSPA12A	ENSG00000165868.16	ENST00000635765.1:ENST00000369209.8:ENST00000674197.1:ENST00000674401.1:ENST00000674505.1:ENST00000674167.1:ENST00000674205.1:ENST00000674394.1:ENST00000674347.1:ENST00000674459.1:ENST00000674344.1:ENST00000674491.1:ENST00000674372.1:ENST00000674375.1:ENST00000481291.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	124	2	3.72444	5.16615	6.60786	0.00470358	0.00345115	0.0413976	0.037649
chr19	3530391	3530491	7191602	0	+	0.65	(0.58,1]	chr19	732250	2	SS3_PROX	SS3_PROX:INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	134	2	4.06678	5.16611	6.26544	0.00544536	2.06156e-4	0.0486855	0.00461335
chr17	40826259	40826359	6734819	0	+	0.35	(0.33,0.36]	chr17	677416	66	INTRON	INTRON	KRT10-AS1	ENSG00000167920.11	ENST00000436612.5:ENST00000301665.8:ENST00000668620.1:ENST00000692645.1:ENST00000666187.1:ENST00000654043.1:ENST00000662074.1	lncRNA	lncRNA	lncRNA	lncRNA	0	55	2	5.00642	5.165665000000001	5.32491	0.0542065	0.00634179	0.151733	0.0501889
chr2	235045825	235045924	1062433	0	+	0.444444	(0.419,0.45]	chr2	115634	22	INTRON	INTRON	SH3BP4	ENSG00000130147.16	ENST00000392011.7:ENST00000409212.5:ENST00000344528.8	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	5.09718	5.165625	5.23407	0.0486006	0.012235	0.145074	0.0757339
chr16	85509785	85509885	6518169	0	+	0.6	(0.58,1]	chr16	646391	1505	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.66416	5.16557	5.66698	0.0144381	0.0102927	0.0833845	0.0684871
chr16	978652	978751	6531825	0	-	0.686869	(0.58,1]	chr16	648726	78	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000545827.6:ENST00000570014.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	5.02314	5.165305	5.30747	0.0196049	0.00638322	0.0955413	0.0501889
chr9	93600270	93600370	4183892	0	+	0.59	(0.58,1]	chr9	397705	230	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.02314	5.165305	5.30747	0.0196049	0.00638322	0.0955413	0.0501889
chr16	89916025	89916121	6526338	0	+	0.583333	(0.58,1]	chr16	647720	5	INTRON	INTRON	ENSG00000267048:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000555427.1:ENST00000639847.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	0	54	2	4.6951	5.165265	5.63543	0.0521567	0.00131165	0.148503	0.0171898
chr3	82214399	82214499	1508528	0	+	0.23	[0,0.29]	chr3	161017	67	INTRON	INTRON	LINC02008	ENSG00000239440.6	ENST00000470263.5:ENST00000494340.2:ENST00000666519.1:ENST00000668833.1:ENST00000653255.1:ENST00000666096.1	lncRNA	lncRNA	lncRNA	lncRNA	0	54	2	4.82096	5.16512	5.50928	0.0456837	0.00267774	0.142336	0.0282006
chr19	17484121	17484221	7220774	0	+	0.41	(0.39,0.419]	chr19	738263	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SLC27A1	ENSG00000130304.17	ENST00000600277.5:ENST00000598424.5:ENST00000252595.12:ENST00000599380.5:ENST00000600297.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	156	2	3.96195	5.1647	6.36745	0.0121905	5.58995e-4	0.0751822	0.00944382
chr9	61970220	61970320	4158028	0	+	0.46	(0.45,0.485]	chr9	395242	4	SS3_PROX	SS3_PROX:INTRON	FAM27C	ENSG00000231527.7	ENST00000653087.1:ENST00000660875.1:ENST00000670686.1:ENST00000443347.6:ENST00000668789.1:ENST00000657353.1:ENST00000669747.1:ENST00000662964.1:ENST00000650759.1:ENST00000656926.1:ENST00000655025.1:ENST00000655049.1:ENST00000659299.1:ENST00000651201.1:ENST00000651799.1	lncRNA	lncRNA	lncRNA	lncRNA	0	55	2	4.89685	5.164285	5.43172	0.0614781	0.00440365	0.158506	0.0393688
chr8	8884073	8884172	3935643	0	-	0.282828	[0,0.29]	chr8	376201	242	INTRON	INTRON	MFHAS1	ENSG00000147324.11	ENST00000276282.7	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.98304	5.1642600000000005	5.34548	0.0197148	0.00935344	0.0958249	0.0646157
chr3	49994646	49994746	1467637	0	+	0.42	(0.419,0.45]	chr3	157160	126	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	127	2	4.00263	5.163925	6.32522	0.00956261	0.00312051	0.0658012	0.0311915
chr11	70736688	70736788	5061648	0	-	0.64	(0.58,1]	chr11	492701	188	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	4.89007	5.163795	5.43752	0.0156166	0.00872525	0.0849828	0.0612699
chr20	64053925	64054024	7510852	0	+	0.616162	(0.58,1]	chr20	783795	35	INTRON	INTRON	TCEA2	ENSG00000171703.17	ENST00000475792.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	54	2	4.89007	5.163795	5.43752	0.0156166	0.00872525	0.0849828	0.0612699
chr21	43903954	43904019	7624818	0	+	0.630769	(0.58,1]	chr21	796892	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.89007	5.163795	5.43752	0.0156166	0.00872525	0.0849828	0.0612699
chr1	2393913	2394004	5346	0	+	0.483516	(0.45,0.485]	chr1	1088	3	INTRON	INTRON	RER1	ENSG00000157916.20	ENST00000378513.7:ENST00000378518.5:ENST00000605895.6:ENST00000306256.13:ENST00000493207.1:ENST00000378512.5:ENST00000443438.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	55	2	5.0722	5.16365	5.2551	0.0373953	0.00988295	0.130656	0.0664239
chr4	10104582	10104678	2195696	0	-	0.479167	(0.45,0.485]	chr4	222418	2	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	5.0722	5.16365	5.2551	0.0373953	0.00988295	0.130656	0.0664239
chr6	129672275	129672375	3259538	0	-	0.48	(0.45,0.485]	chr6	315424	299	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.0722	5.16365	5.2551	0.0373953	0.00988295	0.130656	0.0664239
chr11	70791746	70791846	5062199	0	-	0.5	(0.485,0.523]	chr11	492701	739	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	197	2	3.335	5.163565	6.99213	0.0141019	5.25088e-5	0.0812274	0.00170211
chr17	529372	529471	6822437	0	-	0.393939	(0.39,0.419]	chr17	689687	30	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681050.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000681600.1:ENST00000576149.5:ENST00000681917.1:ENST00000681103.1:ENST00000681858.1:ENST00000570771.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	154	2	3.86868	5.16334	6.458	0.0142603	4.39359e-4	0.0818174	0.00798319
chr16	89302926	89303025	6659838	0	-	0.626263	(0.58,1]	chr16	666658	9	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	279	2	4.51752	5.163130000000001	5.80874	0.00209278	4.61817e-6	0.0287557	2.97736e-4
chr7	79418770	79418869	3626187	0	-	0.414141	(0.39,0.419]	chr7	349238	27	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000628997.1:ENST00000636234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	153	2	3.48458	5.16287	6.84116	0.0266046	1.53866e-4	0.111446	0.00374891
chr1	155927845	155927940	599541	0	-	0.368421	(0.36,0.39]	chr1	70469	3	INTRON	INTRON	KHDC4	ENSG00000132680.11	ENST00000368321.8:ENST00000368320.7:ENST00000368319.3:ENST00000482337.5:ENST00000466713.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	4.72331	5.162805	5.6023	0.0258522	0.0236929	0.111208	0.109555
chr9	136031262	136031361	4432389	0	-	0.40404	(0.39,0.419]	chr9	423642	119	INTRON	INTRON	NACC2	ENSG00000148411.8	ENST00000277554.4:ENST00000371753.5	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.63037	5.162775	5.69518	0.0963077	0.00302238	0.189169	0.0305643
chr18	12579181	12579281	7122083	0	-	0.42	(0.419,0.45]	chr18	724799	319	INTRON	INTRON	SPIRE1	ENSG00000134278.16	ENST00000409402.9:ENST00000410092.7:ENST00000309836.9:ENST00000440472.6:ENST00000453447.6:ENST00000449797.5:ENST00000497844.6:ENST00000462226.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	4.7549	5.162705	5.57051	0.0888907	0.00441471	0.183874	0.0393688
chr14	34855249	34855349	5957276	0	-	0.46	(0.45,0.485]	chr14	583935	100	INTRON	INTRON	BAZ1A	ENSG00000198604.11	ENST00000358716.8:ENST00000360310.6:ENST00000382422.6:ENST00000553573.1:ENST00000553853.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	57	2	4.64346	5.1625049999999995	5.68155	0.0850039	0.00241241	0.181766	0.0261086
chr15	78927110	78927195	6336937	0	-	0.482353	(0.45,0.485]	chr15	624691	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	CTSH	ENSG00000103811.18	ENST00000677011.1:ENST00000220166.10:ENST00000676639.1:ENST00000676510.1:ENST00000678727.1:ENST00000679334.1:ENST00000679017.1:ENST00000677810.1:ENST00000676763.1:ENST00000678886.1:ENST00000677921.1:ENST00000676596.1:ENST00000678114.1:ENST00000678487.1:ENST00000649928.2:ENST00000527715.6:ENST00000530010.6:ENST00000676671.1:ENST00000534533.6:ENST00000678283.1:ENST00000678841.1:ENST00000679125.1:ENST00000677316.1:ENST00000678031.1:ENST00000678644.1:ENST00000676808.1:ENST00000677207.1:ENST00000676486.1:ENST00000677238.1:ENST00000678281.1:ENST00000678799.1:ENST00000525807.6:ENST00000676588.1:ENST00000528191.6:ENST00000678817.1:ENST00000676880.1:ENST00000528741.6:ENST00000678415.1:ENST00000679172.1:ENST00000533777.5:ENST00000534237.6:ENST00000677448.1:ENST00000677534.1:ENST00000677367.1:ENST00000678397.1:ENST00000679047.1:ENST00000676865.1:ENST00000677102.1:ENST00000677874.1:ENST00000677254.1:ENST00000677936.1:ENST00000678940.1:ENST00000677789.1:ENST00000615999.5:ENST00000677049.1:ENST00000678033.1:ENST00000679211.1:ENST00000676850.1:ENST00000534268.6:ENST00000529861.6:ENST00000676738.1:ENST00000527138.6:ENST00000677320.1:ENST00000529612.6:ENST00000676668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	58	2	4.74641	5.162475000000001	5.57854	0.0230065	0.0193126	0.102982	0.0994526
chr2	101133941	101134041	1239923	0	-	0.46	(0.45,0.485]	chr2	133786	241	INTRON	INTRON	TBC1D8	ENSG00000204634.13	ENST00000409318.2:ENST00000376840.8:ENST00000463469.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	4.74641	5.162475000000001	5.57854	0.0230065	0.0193126	0.102982	0.0994526
chr2	20220305	20220405	1096956	0	-	0.49	(0.485,0.523]	chr2	119640	145	INTRON	INTRON	SDC1	ENSG00000115884.11	ENST00000254351.9:ENST00000381150.5:ENST00000403076.5:ENST00000429035.1:ENST00000482879.5:ENST00000447124.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	121	2	4.4145200000000004	5.16246	5.9104	0.0119344	7.5951e-4	0.0741726	0.011724
chr10	100281742	100281837	4748445	0	-	0.347368	(0.33,0.36]	chr10	453799	3	INTRON	INTRON	BLOC1S2	ENSG00000196072.12	ENST00000614731.4:ENST00000618916.4:ENST00000370372.7:ENST00000441611.5:ENST00000579542.1:ENST00000361832.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	4.95163	5.162125	5.37262	0.0583482	0.00569729	0.155373	0.046716
chr6	42602687	42602787	2914136	0	+	0.23	[0,0.29]	chr6	286027	80	INTRON	INTRON	UBR2	ENSG00000024048.11	ENST00000372899.6:ENST00000372901.2:ENST00000372903.6	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.05409	5.1620550000000005	5.27002	0.0318802	0.0048238	0.12158	0.0417661
chr6	36515492	36515592	3128883	0	-	0.43	(0.419,0.45]	chr6	305077	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	STK38	ENSG00000112079.9	ENST00000229812.8	protein_coding	protein_coding	protein_coding	protein_coding	1	166	2	4.16516	5.16198	6.1588	0.00938072	0.00107628	0.0652879	0.0148869
chr6	34404761	34404861	3123957	0	-	0.4	(0.39,0.419]	chr6	304670	122	INTRON	INTRON	RPS10-NUDT3	ENSG00000270800.3	ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	4.72276	5.161855	5.60095	0.0263614	0.0238104	0.111436	0.110638
chr16	87742788	87742888	6656510	0	-	0.53	(0.523,0.58]	chr16	665897	4	SS5_PROX	SS5_PROX:INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	5.06957	5.1617999999999995	5.25403	0.0448011	0.00573579	0.140478	0.0467736
chr7	47497718	47497818	3588789	0	-	0.55	(0.523,0.58]	chr7	346132	162	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	147	2	3.9866	5.16169	6.33678	0.00948884	3.44853e-4	0.0656203	0.00672121
chr15	64989564	64989664	6301675	0	-	0.64	(0.58,1]	chr15	621089	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SPG21	ENSG00000090487.11	ENST00000204566.7:ENST00000561078.5:ENST00000416889.6:ENST00000558765.5:ENST00000560564.1:ENST00000559677.5:ENST00000558339.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	134	2	4.08431	5.161315	6.23832	0.00525202	2.24165e-4	0.0476984	0.00490779
chr10	24123092	24123192	4463735	0	+	0.39	(0.36,0.39]	chr10	427229	802	INTRON	INTRON	KIAA1217	ENSG00000120549.19	ENST00000376462.5:ENST00000636305.1	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.82572	5.16107	5.49642	0.0751666	0.00476539	0.172839	0.0414441
chr3	188440991	188441091	1654672	0	+	0.38	(0.36,0.39]	chr3	173774	343	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000618621.4:ENST00000640853.1:ENST00000494233.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	4.82572	5.16107	5.49642	0.0751666	0.00476539	0.172839	0.0414441
chr10	131958841	131958940	4616616	0	+	0.565657	(0.523,0.58]	chr10	441116	30	UTR3	UTR3:EXON_MRNA	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	5.01677	5.16096	5.30515	0.0482765	0.00509102	0.144601	0.0433513
chr20	36856781	36856880	7557069	0	-	0.555556	(0.523,0.58]	chr20	789155	170	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.01677	5.16096	5.30515	0.0482765	0.00509102	0.144601	0.0433513
chr4	3369778	3369878	2005134	0	+	0.58	(0.523,0.58]	chr4	204663	264	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	5.01677	5.16096	5.30515	0.0482765	0.00509102	0.144601	0.0433513
chr5	108143337	108143437	2737418	0	-	0.32	(0.29,0.33]	chr5	268851	1220	INTRON	INTRON	FBXL17	ENSG00000145743.18	ENST00000542267.7:ENST00000496714.2:ENST00000481160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	5.07676	5.1609549999999995	5.24515	0.0412683	0.00631714	0.136301	0.0501889
chr20	13612474	13612573	7527686	0	-	0.464646	(0.45,0.485]	chr20	785639	115	INTRON	INTRON	TASP1	ENSG00000089123.16	ENST00000480436.5:ENST00000337743.9:ENST00000465381.5:ENST00000455532.5:ENST00000476108.5:ENST00000483898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	124	2	4.4494	5.160914999999999	5.87243	0.0143887	7.63833e-4	0.0821732	0.0117723
chr15	49010167	49010264	6252880	0	-	0.268041	[0,0.29]	chr15	615980	4	INTRON	INTRON	SECISBP2L	ENSG00000138593.9	ENST00000559471.6:ENST00000261847.7:ENST00000380927.6	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.85009	5.160905	5.47172	0.0158465	0.0124991	0.0859576	0.0765738
chr1	48224995	48225095	120949	0	+	0.54	(0.523,0.58]	chr1	15164	2	SS5_PROX	SS5_PROX:INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	5.1205	5.160769999999999	5.20104	0.0416463	0.00648051	0.136301	0.0503748
chr4	73417669	73417769	2056982	0	+	0.24	[0,0.29]	chr4	210271	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ALB	ENSG00000163631.17	ENST00000621628.4:ENST00000295897.9:ENST00000415165.6:ENST00000621085.4:ENST00000503124.5:ENST00000476441.6:ENST00000509063.5:ENST00000401494.7:ENST00000505649.5:ENST00000511370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	115	2	4.03858	5.160494999999999	6.28241	0.00341772	0.00189492	0.0374749	0.0221912
chr19	46869505	46869605	7274266	0	+	0.36	(0.33,0.36]	chr19	747261	79	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1	protein_coding	protein_coding	protein_coding	protein_coding	3	245	2	2.90472	5.160475	7.41623	0.0230811	2.35402e-5	0.102982	9.46487e-4
chr2	194451912	194452012	979971	0	+	0.48	(0.45,0.485]	chr2	107833	96	INTRON	INTRON	LINC01821	ENSG00000225539.8	ENST00000659759.1:ENST00000689500.1:ENST00000650872.1	lncRNA	lncRNA	lncRNA	lncRNA	0	62	2	4.50852	5.16031	5.8121	0.0302873	0.0158765	0.126768	0.0859576
chr4	70717571	70717671	2054499	0	+	0.36	(0.33,0.36]	chr4	209967	119	INTRON	INTRON	RUFY3	ENSG00000018189.13	ENST00000503876.5:ENST00000417478.6	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.93777	5.160305	5.38284	0.0317908	0.0144674	0.121384	0.0833845
chr5	176923847	176923947	2816463	0	-	0.36	(0.33,0.36]	chr5	275838	42	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000510698.2:ENST00000503273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	56	2	4.93777	5.160305	5.38284	0.0317908	0.0144674	0.121384	0.0833845
chr8	9771038	9771130	3754886	0	+	0.358696	(0.33,0.36]	chr8	360881	4	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.93777	5.160305	5.38284	0.0317908	0.0144674	0.121384	0.0833845
chr2	74862742	74862842	837316	0	+	0.46	(0.45,0.485]	chr2	94613	79	INTRON	INTRON	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1:ENST00000472302.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	59	2	4.67139	5.160304999999999	5.64922	0.0223378	0.020599	0.108193	0.0982852
chr13	79497709	79497809	5617111	0	+	0.37	(0.36,0.39]	chr13	552976	158	INTRON	INTRON	NDFIP2	ENSG00000102471.15	ENST00000612570.4:ENST00000218652.12:ENST00000650134.1:ENST00000487865.5:ENST00000465762.5:ENST00000620924.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	4.98942	5.16024	5.33106	0.0383628	0.0141427	0.131324	0.0833845
chr15	98888341	98888441	6195732	0	+	0.39	(0.36,0.39]	chr15	609681	141	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1:ENST00000557938.5:ENST00000560186.5:ENST00000560277.5:ENST00000557873.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	56	2	4.98942	5.16024	5.33106	0.0383628	0.0141427	0.131324	0.0833845
chr2	55184940	55185040	1149295	0	-	0.37	(0.36,0.39]	chr2	125544	28	INTRON	INTRON	CLHC1	ENSG00000162994.16	ENST00000401408.6:ENST00000428621.5:ENST00000494539.5:ENST00000407122.5:ENST00000406076.5:ENST00000411884.2:ENST00000487320.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	56	2	4.98942	5.16024	5.33106	0.0383628	0.0141427	0.131324	0.0833845
chr2	174173987	174174087	1320194	0	-	0.33	(0.29,0.33]	chr2	141020	316	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.02395	5.160105	5.29626	0.0445554	0.005619	0.140478	0.0462026
chr16	57375791	57375889	6466022	0	+	0.44898	(0.419,0.45]	chr16	641365	28	INTRON	INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.87598	5.160025	5.44407	0.0768574	0.00585948	0.174882	0.0474117
chr17	75687782	75687881	6799483	0	+	0.434343	(0.419,0.45]	chr17	685907	156	INTRON	INTRON	SAP30BP	ENSG00000161526.15	ENST00000583170.5:ENST00000584667.6:ENST00000355423.7:ENST00000578354.5:ENST00000577292.5:ENST00000542343.5:ENST00000579877.5:ENST00000293208.13:ENST00000579864.5:ENST00000583737.5:ENST00000578288.5:ENST00000580484.5:ENST00000582022.5:ENST00000580322.5:ENST00000583536.5:ENST00000578909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	56	2	4.87598	5.160025	5.44407	0.0768574	0.00585948	0.174882	0.0474117
chr7	47367167	47367266	3587463	0	-	0.636364	(0.58,1]	chr7	346030	205	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	116	2	3.72143	5.15978	6.59813	0.00366718	0.00158605	0.0346803	0.0245893
chr19	16875354	16875454	7218139	0	+	0.51	(0.485,0.523]	chr19	737687	28	INTRON	INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000595541.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.01719	5.15939	5.30159	0.0480495	0.00529578	0.144601	0.044517
chr1	44225828	44225928	459426	0	-	0.43	(0.419,0.45]	chr1	55285	38	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	56	2	5.04004	5.1593599999999995	5.27868	0.0457732	0.0137308	0.142336	0.0814223
chr12	2986740	2986840	5157951	0	+	0.43	(0.419,0.45]	chr12	501258	260	INTRON	INTRON	TEAD4	ENSG00000197905.10	ENST00000358409.7:ENST00000359864.8:ENST00000540314.2:ENST00000536826.2:ENST00000543035.6:ENST00000397122.6:ENST00000443986.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	5.04004	5.1593599999999995	5.27868	0.0457732	0.0137308	0.142336	0.0814223
chr12	111483231	111483331	5499213	0	-	0.32	(0.29,0.33]	chr12	541307	4	SS3_PROX	SS3_PROX:INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000643474.1:ENST00000643694.1:ENST00000645162.1:ENST00000551755.6:ENST00000644883.1:ENST00000647305.1:ENST00000495342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	119	2	4.11338	5.1592199999999995	6.20506	0.00641163	0.00180446	0.0529785	0.0215053
chr4	709758	709858	1993725	0	+	0.5	(0.485,0.523]	chr4	203088	34	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	5.12092	5.159205	5.19749	0.0414411	0.00672953	0.136301	0.0519464
chr11	70593929	70594029	5060212	0	-	0.57	(0.523,0.58]	chr11	492663	906	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	55	2	4.96714	5.15919	5.35124	0.0295772	0.0108948	0.116079	0.0706366
chr7	150398630	150398728	3514552	0	+	0.571429	(0.523,0.58]	chr7	339071	1	INTRON	INTRON	ENSG00000284048	ENSG00000284048.2	ENST00000483664.5:ENST00000486297.1	lncRNA	lncRNA	lncRNA	lncRNA	0	55	2	4.96714	5.15919	5.35124	0.0295772	0.0108948	0.116079	0.0706366
chr12	419433	419533	5148379	0	+	0.5	(0.485,0.523]	chr12	500517	4	INTRON	INTRON	CCDC77	ENSG00000120647.10	ENST00000540180.5:ENST00000422000.5:ENST00000543504.5:ENST00000540344.5:ENST00000412006.6:ENST00000239830.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	4.78426	5.15867	5.53308	0.0660335	0.00304306	0.162385	0.0306636
chr12	132533565	132533664	5352951	0	+	0.616162	(0.58,1]	chr12	523670	52	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	110	2	4.33402	5.15862	5.98322	0.00562007	6.31529e-4	0.0493906	0.0102754
chrX	31434451	31434551	8005747	0	-	0.33	(0.29,0.33]	chrX	836924	855	INTRON	INTRON	DMD	ENSG00000198947.18	ENST00000358062.6:ENST00000357033.9:ENST00000619831.5:ENST00000378677.6:ENST00000359836.5:ENST00000378707.7:ENST00000541735.5:ENST00000343523.7:ENST00000684130.1:ENST00000680961.1:ENST00000682238.1:ENST00000683675.1:ENST00000620040.5:ENST00000474231.5:ENST00000683957.1:ENST00000681646.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	55	2	4.95831	5.15839	5.35847	0.0269557	0.0118616	0.112113	0.0746945
chr22	25487026	25487126	7701414	0	+	0.56	(0.523,0.58]	chr22	805972	255	INTRON	INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000686640.1:ENST00000509460.3:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	63	2	4.43597	5.158345000000001	5.88072	0.0313935	0.0126258	0.127822	0.0761905
chr3	24269351	24269451	1714215	0	-	0.55	(0.523,0.58]	chr3	177980	309	INTRON	INTRON	THRB	ENSG00000151090.20	ENST00000646209.2:ENST00000396671.7:ENST00000356447.9:ENST00000646432.1:ENST00000643772.1:ENST00000645139.1:ENST00000642307.1:ENST00000644321.1:ENST00000646966.1:ENST00000416420.5:ENST00000413780.5:ENST00000447875.5:ENST00000453729.6:ENST00000431815.5:ENST00000447414.5:ENST00000428492.5:ENST00000418247.1:ENST00000646300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	57	2	4.58058	5.158335	5.73609	0.0860403	0.0017613	0.181766	0.0211077
chr1	9357085	9357184	20227	0	+	0.535354	(0.523,0.58]	chr1	2217	1	INTRON	INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11:ENST00000357898.3:ENST00000377399.2	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.96197	5.158245	5.35452	0.0521137	0.00453096	0.148503	0.0400651
chr7	76999510	76999609	3398795	0	+	0.606061	(0.58,1]	chr7	328286	88	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	58	2	4.58025	5.158135	5.73602	0.0172566	0.00904546	0.0923809	0.0637469
chr15	28651587	28651687	6068874	0	+	0.61	(0.58,1]	chr15	596166	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	0	52	2	5.00585	5.158105	5.31036	0.0323732	0.00312721	0.121593	0.0311915
chr17	40091721	40091820	6732662	0	+	0.616162	(0.58,1]	chr17	677066	24	UTR3	UTR3:EXON_MRNA:INTRON	THRA	ENSG00000126351.13	ENST00000394121.8:ENST00000584985.5:ENST00000264637.8:ENST00000450525.7	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.00585	5.158105	5.31036	0.0323732	0.00312721	0.121593	0.0311915
chr21	41844708	41844807	7673776	0	-	0.59596	(0.58,1]	chr21	802011	45	INTRON	INTRON	PRDM15	ENSG00000141956.14	ENST00000422911.6:ENST00000441787.5:ENST00000449395.6:ENST00000398548.6:ENST00000447016.6:ENST00000269844.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	5.00585	5.158105	5.31036	0.0323732	0.00312721	0.121593	0.0311915
chr2	239279079	239279179	1391499	0	-	0.54	(0.523,0.58]	chr2	148740	275	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	54	2	5.14602	5.157855	5.16969	0.0387762	0.00734367	0.131324	0.0550721
chr12	72085588	72085688	5269687	0	+	0.5	(0.485,0.523]	chr12	513915	95	INTRON	INTRON	TPH2	ENSG00000139287.13	ENST00000550403.5:ENST00000547348.5:ENST00000551074.5:ENST00000547278.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	55	2	4.96361	5.157640000000001	5.35167	0.0294163	0.0112713	0.116079	0.071709
chr12	81094194	81094294	5283176	0	+	0.32	(0.29,0.33]	chr12	514448	154	INTRON	INTRON	ACSS3	ENSG00000111058.8	ENST00000549175.1:ENST00000261206.7:ENST00000548058.6	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.58769	5.157415	5.72714	0.0806047	0.00198096	0.177452	0.0229039
chr3	188291142	188291242	1653170	0	+	0.37	(0.36,0.39]	chr3	173754	506	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.04949	5.157285	5.26508	0.0563927	0.00795848	0.154188	0.0578938
chr19	29975890	29975989	7238035	0	+	0.373737	(0.36,0.39]	chr19	740935	43	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000570564.5:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5:ENST00000576442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	5.1004	5.1572	5.214	0.0526991	0.00887999	0.14912	0.0618231
chr11	20100436	20100536	4820034	0	+	0.53	(0.523,0.58]	chr11	461596	1	SS3_PROX	SS3_PROX:INTRON	NAV2	ENSG00000166833.23	ENST00000360655.8:ENST00000396085.6:ENST00000349880.9:ENST00000396087.7:ENST00000533917.5	protein_coding	protein_coding	protein_coding	protein_coding	1	156	2	4.27661	5.157085	6.03756	0.0055542	7.92905e-4	0.049265	0.0120621
chr13	47946339	47946439	5707805	0	-	0.3	(0.29,0.33]	chr13	559990	5	INTRON	INTRON	SUCLA2	ENSG00000136143.16	ENST00000643584.1:ENST00000493152.6:ENST00000646932.1:ENST00000643023.1:ENST00000646804.1:ENST00000647361.1:ENST00000642944.1:ENST00000467222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	5.13716	5.15703	5.1769	0.035586	0.00805226	0.127529	0.0582806
chr5	176588332	176588431	2596938	0	+	0.454545	(0.45,0.485]	chr5	257747	11	INTRON	INTRON	CDHR2	ENSG00000074276.11	ENST00000510636.5:ENST00000261944.10:ENST00000506348.1:ENST00000513031.5:ENST00000508085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	55	2	4.83755	5.1570149999999995	5.47648	0.06646	0.0039628	0.162385	0.0368027
chr2	54602622	54602722	799743	0	+	0.4	(0.39,0.419]	chr2	90808	30	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7:ENST00000333896.5	protein_coding	protein_coding	protein_coding	protein_coding	2	168	2	3.76385	5.15686	6.54987	0.00571127	0.00174763	0.0498083	0.0210717
chrX	65515373	65515473	8055027	0	-	0.5	(0.485,0.523]	chrX	840751	4	SS3_PROX	SS3_PROX:INTRON	LAS1L	ENSG00000001497.18	ENST00000677056.1:ENST00000677969.1:ENST00000374811.8:ENST00000374807.9:ENST00000677834.1:ENST00000484069.1:ENST00000374804.9:ENST00000677986.1:ENST00000677087.1:ENST00000679056.1:ENST00000679261.1:ENST00000678074.1:ENST00000678705.1:ENST00000679277.1:ENST00000677154.1:ENST00000678547.1:ENST00000678956.1:ENST00000679116.1:ENST00000678848.1:ENST00000678173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	57	2	4.581	5.156755	5.73251	0.085711	0.00184599	0.181766	0.0217471
chr1	201137400	201137498	641665	0	-	0.346939	(0.33,0.36]	chr1	75780	12	INTRON	INTRON	TMEM9	ENSG00000116857.17	ENST00000367333.6:ENST00000367334.9:ENST00000367330.6:ENST00000367332.5:ENST00000472411.1:ENST00000495205.1:ENST00000485839.6:ENST00000497582.5:ENST00000455367.5:ENST00000414605.2:ENST00000435310.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	55	2	4.89468	5.15674	5.4188	0.0629186	0.00513015	0.160778	0.0435186
chr10	102962688	102962788	4578766	0	+	0.34	(0.33,0.36]	chr10	437563	352	INTRON	INTRON	CNNM2	ENSG00000148842.18	ENST00000369878.9:ENST00000433628.2	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.89468	5.15674	5.4188	0.0629186	0.00513015	0.160778	0.0435186
chr15	25366693	25366792	6205269	0	-	0.343434	(0.33,0.36]	chr15	610765	58	INTRON	INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	55	2	4.89468	5.15674	5.4188	0.0629186	0.00513015	0.160778	0.0435186
chr10	74695620	74695720	4517147	0	+	0.49	(0.485,0.523]	chr10	432011	84	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	4.96239	5.156675	5.35096	0.0518747	0.0047171	0.148503	0.0413976
chr19	58585954	58586054	7301968	0	+	0.51	(0.485,0.523]	chr19	752223	4	SS3_PROX	SS3_PROX:INTRON	CENPBD2P:ENSG00000286104	ENSG00000213753.11:ENSG00000286104.1	ENST00000651608.1:ENST00000487264.5:ENST00000473164.1:ENST00000652551.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:processed_transcript	0	54	2	4.96239	5.156675	5.35096	0.0518747	0.0047171	0.148503	0.0413976
chr1	12589021	12589121	402493	0	-	0.53	(0.523,0.58]	chr1	46222	80	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	57	2	4.7629	5.15651	5.55012	0.0217068	0.0167014	0.100615	0.0917029
chr1	205679694	205679793	648438	0	-	0.565657	(0.523,0.58]	chr1	76863	145	INTRON	INTRON	SLC45A3	ENSG00000158715.6	ENST00000367145.4	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.7629	5.15651	5.55012	0.0217068	0.0167014	0.100615	0.0917029
chr12	6846587	6846687	5363771	0	-	0.53	(0.523,0.58]	chr12	525569	19	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CDCA3	ENSG00000111665.12	ENST00000422785.7:ENST00000604599.1:ENST00000603043.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	4.7629	5.15651	5.55012	0.0217068	0.0167014	0.100615	0.0917029
chr2	42667641	42667740	776451	0	+	0.535354	(0.523,0.58]	chr2	89134	74	INTRON	INTRON	MTA3	ENSG00000057935.14	ENST00000405592.5:ENST00000406652.5:ENST00000407270.7:ENST00000405094.2:ENST00000406911.5:ENST00000454356.5:ENST00000409019.5:ENST00000490611.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	57	2	4.7629	5.15651	5.55012	0.0217068	0.0167014	0.100615	0.0917029
chr6	41586794	41586834	2912919	0	+	0.625	(0.58,1]	chr6	285788	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	FOXP4	ENSG00000137166.17	ENST00000307972.10:ENST00000373063.7:ENST00000409208.5:ENST00000373057.7:ENST00000670130.1	protein_coding	protein_coding	protein_coding	protein_coding	1	132	2	3.99446	5.1563300000000005	6.3182	0.0063152	1.74994e-4	0.0524685	0.00410754
chr17	42698366	42698450	6736630	0	+	0.416667	(0.39,0.419]	chr17	677989	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CNTNAP1	ENSG00000108797.12	ENST00000264638.9:ENST00000591662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	5.04815	5.15633	5.26451	0.0572698	0.00800901	0.154343	0.0580954
chr19	7639100	7639196	7199303	0	+	0.625	(0.58,1]	chr19	733964	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	STXBP2	ENSG00000076944.17	ENST00000593535.5:ENST00000595950.5:ENST00000597467.1:ENST00000221283.10:ENST00000441779.6:ENST00000595181.5:ENST00000599905.1:ENST00000597068.5:ENST00000414284.6:ENST00000599737.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	53	2	4.76284	5.1563099999999995	5.54978	0.0471737	0.00165911	0.143232	0.0202545
chr9	96323314	96323406	4343364	0	-	0.5	(0.485,0.523]	chr9	414983	9	INTRON	INTRON	SLC35D2	ENSG00000130958.13	ENST00000650065.1:ENST00000253270.13:ENST00000375259.9:ENST00000490599.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	5.14248	5.1563	5.17012	0.038581	0.00761903	0.131324	0.0561937
chr11	12812223	12812323	4803024	0	+	0.46	(0.45,0.485]	chr11	460563	474	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.01267	5.1562	5.29973	0.035042	0.011221	0.12704	0.071709
chr8	17765458	17765557	3946072	0	-	0.474747	(0.45,0.485]	chr8	376990	69	INTRON	INTRON	MTUS1	ENSG00000129422.15	ENST00000381869.5:ENST00000693296.1:ENST00000262102.10:ENST00000523718.5:ENST00000518755.1:ENST00000518891.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	55	2	5.01267	5.1562	5.29973	0.035042	0.011221	0.12704	0.071709
chr2	55023289	55023389	1148260	0	-	0.44	(0.419,0.45]	chr2	125466	89	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	2	170	2	3.71644	5.156155	6.59587	0.00611222	0.002104	0.0517172	0.0239483
chr2	231769540	231769640	1383369	0	-	0.36	(0.33,0.36]	chr2	147865	300	INTRON	INTRON	PDE6D	ENSG00000156973.14	ENST00000287600.9:ENST00000409772.5:ENST00000428104.2:ENST00000486044.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	55	2	5.05937	5.156145	5.25292	0.0384256	0.0112642	0.131324	0.071709
chr8	38275145	38275244	3966475	0	-	0.353535	(0.33,0.36]	chr8	379050	56	UTR3	UTR3:EXON_MRNA	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.05937	5.156145	5.25292	0.0384256	0.0112642	0.131324	0.071709
chr15	57237096	57237195	6113545	0	+	0.363636	(0.36,0.39]	chr15	601681	26	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000561346.5:ENST00000561235.5:ENST00000560764.5:ENST00000543579.5:ENST00000537840.5:ENST00000343827.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	151	2	3.68795	5.15609	6.62423	0.0189953	2.77822e-4	0.0947671	0.00576679
chr1	12593496	12593595	402538	0	-	0.484848	(0.45,0.485]	chr1	46222	125	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	56	2	4.88567	5.15577	5.42587	0.0290571	0.0146126	0.116079	0.0837727
chr2	15338538	15338638	1091710	0	-	0.48	(0.45,0.485]	chr2	118940	74	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.88567	5.15577	5.42587	0.0290571	0.0146126	0.116079	0.0837727
chr10	75894623	75894723	4525115	0	+	0.49	(0.485,0.523]	chr10	432292	107	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	164	2	4.08968	5.15569	6.2217	0.00693912	5.27938e-4	0.0553898	0.00907245
chr11	47806969	47807069	5037741	0	-	0.37	(0.36,0.39]	chr11	487901	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.99672	5.155564999999999	5.31441	0.0604395	0.00715023	0.158506	0.0541241
chr15	98888441	98888541	6195733	0	+	0.38	(0.36,0.39]	chr15	609681	142	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1:ENST00000557938.5:ENST00000560186.5:ENST00000560277.5:ENST00000557873.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	55	2	4.99672	5.155564999999999	5.31441	0.0604395	0.00715023	0.158506	0.0541241
chr20	44402817	44402891	7482942	0	+	0.581081	(0.58,1]	chr20	779640	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000682427.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	175	2	3.55481	5.15543	6.75605	0.00112759	8.61624e-4	0.0202727	0.0127848
chr8	30555556	30555656	3789890	0	+	0.51	(0.485,0.523]	chr8	364962	56	INTRON	INTRON	RBPMS	ENSG00000157110.16	ENST00000320203.8:ENST00000287771.9:ENST00000397323.9:ENST00000519359.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	68	2	4.23628	5.155355	6.07443	0.045492200000000003	0.00899749	0.154539	0.0637469
chr10	75728147	75728247	4523445	0	+	0.4	(0.39,0.419]	chr10	432271	802	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	211	2	3.83585	5.1553	6.47475	0.00649594	7.84079e-4	0.0532359	0.0119897
chr16	30992126	30992225	6579802	0	-	0.585859	(0.58,1]	chr16	657721	30	UTR3	UTR3:EXON_MRNA	STX1B	ENSG00000099365.11	ENST00000215095.11	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.94882	5.155175	5.36153	0.0354433	0.00273899	0.127188	0.028553
chr4	714940	715040	1993777	0	+	0.61	(0.58,1]	chr4	203088	86	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	52	2	4.94882	5.155175	5.36153	0.0354433	0.00273899	0.127188	0.028553
chr7	74499202	74499302	3391819	0	+	0.65	(0.58,1]	chr7	327343	447	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.94882	5.155175	5.36153	0.0354433	0.00273899	0.127188	0.028553
chr6	158565926	158566026	3063954	0	+	0.42	(0.419,0.45]	chr6	297687	53	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	1	130	2	3.71446	5.155165	6.59587	0.00621762	0.00611222	0.0517172	0.0496139
chr22	17103777	17103877	7683230	0	+	0.64	(0.58,1]	chr22	803623	2	SS5_PROX	SS5_PROX:INTRON	IL17RA	ENSG00000177663.15	ENST00000319363.11:ENST00000612619.2:ENST00000694951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	53	2	4.95814	5.15514	5.35214	0.0181452	0.0074469	0.0921579	0.0553519
chr6	31736061	31736161	3119446	0	-	0.48	(0.45,0.485]	chr6	303333	4	SS5_PROX	SS5_PROX:INTRON	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000616760.1:ENST00000375784.8	protein_coding	protein_coding	protein_coding	protein_coding	3	198	2	3.1546	5.155015	7.15543	0.00413108	0.00144472	0.0375737	0.0232985
chrX	24207025	24207125	7854898	0	+	0.49	(0.485,0.523]	chrX	823857	3	SS3_PROX	SS3_PROX:INTRON	ZFX	ENSG00000005889.16	ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000379177.5:ENST00000459724.1:ENST00000338565.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	4.75939	5.154965	5.55054	0.0215787	0.0172254	0.100612	0.0923809
chr15	57275258	57275358	6113941	0	+	0.47	(0.45,0.485]	chr15	601729	16	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000543579.5:ENST00000537840.5:ENST00000343827.7:ENST00000559710.5:ENST00000559703.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	162	2	3.80217	5.15478	6.50739	0.00482293	0.00132239	0.0453395	0.0173138
chr9	127550158	127550258	4412005	0	-	0.66	(0.58,1]	chr9	420485	180	INTRON	INTRON	NIBAN2	ENSG00000136830.12	ENST00000373314.7:ENST00000373312.4:ENST00000478917.1:ENST00000468379.1:ENST00000484348.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	5.14497	5.15475	5.16453	0.0249802	0.00474658	0.10758	0.0413976
chr17	72528826	72528926	6963595	0	-	0.43	(0.419,0.45]	chr17	710377	19	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	58	2	4.62273	5.154745	5.68676	0.103601	0.00338051	0.197541	0.0328791
chr20	10711069	10711169	7437915	0	+	0.43	(0.419,0.45]	chr20	774077	131	INTRON	INTRON	LINC01752	ENSG00000224961.3	ENST00000417299.2	lncRNA	lncRNA	lncRNA	lncRNA	0	58	2	4.62273	5.154745	5.68676	0.103601	0.00338051	0.197541	0.0328791
chr9	134351710	134351810	4260940	0	+	0.44	(0.419,0.45]	chr9	406311	247	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	166	2	4.17778	5.154745	6.13171	0.00918261	0.00115219	0.0643562	0.0157112
chr19	17146090	17146189	7218907	0	+	0.414141	(0.39,0.419]	chr19	737731	2	INTRON	INTRON	MYO9B	ENSG00000099331.14	ENST00000682292.1:ENST00000595618.5:ENST00000594824.5:ENST00000397274.6:ENST00000595641.5	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.99538	5.154615	5.31385	0.0613573	0.0071966	0.158506	0.0543014
chr3	106834636	106834735	1866116	0	-	0.40404	(0.39,0.419]	chr3	189920	12	INTRON	INTRON	LINC00882	ENSG00000242759.8	ENST00000660862.1:ENST00000668760.1:ENST00000671682.1	lncRNA	lncRNA	lncRNA	lncRNA	0	55	2	4.99538	5.154615	5.31385	0.0613573	0.0071966	0.158506	0.0543014
chr8	38766397	38766497	3802219	0	+	0.4	(0.39,0.419]	chr8	365828	86	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	4.99538	5.154615	5.31385	0.0613573	0.0071966	0.158506	0.0543014
chr2	240533833	240533933	1394781	0	-	0.4	(0.39,0.419]	chr2	149044	13	INTRON	INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000405523.7:ENST00000405002.5:ENST00000484526.5:ENST00000459901.5:ENST00000496300.5:ENST00000441168.5:ENST00000443318.1:ENST00000462004.5:ENST00000418708.3:ENST00000418505.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	55	2	5.14823	5.154355	5.16048	0.0501234	0.00999413	0.147892	0.0667545
chr22	28027024	28027123	7775284	0	-	0.40404	(0.39,0.419]	chr22	815662	123	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7:ENST00000612946.4	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.14823	5.154355	5.16048	0.0501234	0.00999413	0.147892	0.0667545
chr3	47443302	47443398	1760986	0	-	0.541667	(0.523,0.58]	chr3	181607	1	SS3_PROX	SS3_PROX:INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000648151.1:ENST00000416208.5:ENST00000416847.5:ENST00000448217.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	4.83424	5.1540300000000006	5.47382	0.0244797	0.0144272	0.106683	0.0833845
chr16	335459	335558	6529863	0	-	0.515152	(0.485,0.523]	chr16	648381	204	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	56	2	4.65198	5.153995	5.65601	0.0783889	0.00224147	0.175203	0.024843
chr10	133349587	133349687	4783430	0	-	0.72	(0.58,1]	chr10	457516	34	INTRON	INTRON	ENSG00000226699	ENSG00000226699.1	ENST00000452591.1	lncRNA	lncRNA	lncRNA	lncRNA	1	147	2	4.47828	5.15396	5.82964	0.00227919	7.58111e-4	0.0301641	0.0117078
chr15	98805480	98805580	6194901	0	+	0.54	(0.523,0.58]	chr15	609667	206	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1:ENST00000557938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	426	2	4.77789	5.15393	5.52997	4.59529e-4	6.25381e-5	0.0123493	0.00192791
chr10	132574741	132574841	4617208	0	+	0.56	(0.523,0.58]	chr10	441139	362	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.905	5.153625	5.40225	0.0563605	0.00404292	0.154188	0.0371291
chr2	39107640	39107740	1127230	0	-	0.25	[0,0.29]	chr2	123480	93	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	4.91809	5.153445	5.3888	0.0183035	0.0107911	0.0922556	0.0704469
chr16	89291283	89291382	6659716	0	-	0.575758	(0.523,0.58]	chr16	666641	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	158	2	3.80997	5.153275	6.49658	0.00424382	0.00114978	0.0422099	0.0157019
chr18	77017977	77018077	7180494	0	-	0.3	(0.29,0.33]	chr18	730157	3	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000580402.5:ENST00000580473.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000495162.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	4.82544	5.153255	5.48107	0.0222022	0.0156279	0.101857	0.0877396
chr17	32821537	32821637	6886792	0	-	0.42	(0.419,0.45]	chr17	698996	269	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000579584.5:ENST00000583621.1	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.78575	5.15324	5.52073	0.0327198	0.0224633	0.122543	0.108193
chr7	67079147	67079247	3384820	0	+	0.43	(0.419,0.45]	chr7	326583	114	INTRON	INTRON	TYW1	ENSG00000198874.14	ENST00000359626.10:ENST00000361660.8:ENST00000495971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	58	2	4.78575	5.15324	5.52073	0.0327198	0.0224633	0.122543	0.108193
chr19	6691526	6691625	7322657	0	-	0.474747	(0.45,0.485]	chr19	756435	4	INTRON	INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000695653.1:ENST00000695654.1:ENST00000695692.1:ENST00000695652.1:ENST00000695655.1:ENST00000598805.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	195	2	3.29091	5.1531	7.01529	0.00288447	0.00188703	0.0297057	0.0271069
chr12	120766062	120766162	5522926	0	-	0.57	(0.523,0.58]	chr12	544117	4	SS5_PROX	SS5_PROX:INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000392495.7:ENST00000545209.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	5.08882	5.1530450000000005	5.21727	0.0361597	0.00834774	0.127853	0.0598672
chr17	66336792	66336892	6783772	0	+	0.57	(0.523,0.58]	chr17	684226	303	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	54	2	5.08882	5.1530450000000005	5.21727	0.0361597	0.00834774	0.127853	0.0598672
chr2	239275381	239275481	1391462	0	-	0.56	(0.523,0.58]	chr2	148740	238	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	54	2	5.08882	5.1530450000000005	5.21727	0.0361597	0.00834774	0.127853	0.0598672
chr21	8810068	8810167	7637416	0	-	0.565657	(0.523,0.58]	chr21	798930	25	INTRON	INTRON	ENSG00000286033	ENSG00000286033.1	ENST00000651312.1	lncRNA	lncRNA	lncRNA	lncRNA	0	54	2	5.08882	5.1530450000000005	5.21727	0.0361597	0.00834774	0.127853	0.0598672
chr10	18557767	18557867	4642306	0	-	0.34	(0.33,0.36]	chr10	443321	54	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	4.65869	5.152855000000001	5.64702	0.0248983	0.0212683	0.114418	0.0996805
chr6	166954986	166955084	3302043	0	-	0.27551	[0,0.29]	chr6	319750	26	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000358165.7:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	469	2	4.62995	5.152815	5.67568	0.00174548	2.8899e-4	0.0210473	0.0096494
chr16	16003420	16003520	6406538	0	+	0.5	(0.485,0.523]	chr16	633005	533	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	56	2	4.83072	5.152485	5.47425	0.0243396	0.0148956	0.106588	0.0847741
chr16	85232165	85232265	6515390	0	+	0.52	(0.485,0.523]	chr16	646377	44	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	56	2	4.83072	5.152485	5.47425	0.0243396	0.0148956	0.106588	0.0847741
chr20	31548081	31548175	7453171	0	+	0.382979	(0.36,0.39]	chr20	775703	1	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HM13	ENSG00000101294.18	ENST00000335574.10:ENST00000674240.1:ENST00000340852.9:ENST00000398174.9:ENST00000649820.1:ENST00000466766.2:ENST00000650367.1:ENST00000496438.5:ENST00000344042.5:ENST00000649374.1:ENST00000460225.5:ENST00000469126.5:ENST00000492709.5:ENST00000469097.5:ENST00000487964.5:ENST00000464508.1:ENST00000649583.1:ENST00000479096.1:ENST00000464661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	172	2	4.01367	5.152475000000001	6.29128	0.0086512	8.9097e-4	0.0623824	0.0131121
chr3	51975604	51975704	1472716	0	+	0.44	(0.419,0.45]	chr3	158082	4	SS5_PROX	SS5_PROX:INTRON	ABHD14A	ENSG00000248487.10	ENST00000497864.5:ENST00000494478.5:ENST00000273596.8:ENST00000474575.1:ENST00000491470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	56	2	4.81671	5.152085	5.48746	0.08258	0.00532156	0.179396	0.0446153
chr7	29187287	29187387	3334214	0	+	0.45	(0.419,0.45]	chr7	322834	388	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	4.81671	5.152085	5.48746	0.08258	0.00532156	0.179396	0.0446153
chr9	112614775	112614874	4221462	0	+	0.444444	(0.419,0.45]	chr9	400310	392	INTRON	INTRON	KIAA1958	ENSG00000165185.15	ENST00000337530.11:ENST00000536272.5:ENST00000374244.3	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.81671	5.152085	5.48746	0.08258	0.00532156	0.179396	0.0446153
chr17	18018886	18018986	6866316	0	-	0.51	(0.485,0.523]	chr17	695952	2	SS3_PROX	SS3_PROX:INTRON	ATPAF2	ENSG00000171953.16	ENST00000584205.5:ENST00000462733.5:ENST00000585101.5:ENST00000474627.8:ENST00000496852.5:ENST00000467560.5:ENST00000581698.1:ENST00000469327.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	4.90542	5.152055000000001	5.39869	0.0561086	0.00421243	0.154188	0.0380601
chr3	111945557	111945657	1536425	0	+	0.41	(0.39,0.419]	chr3	163014	2	SS5_PROX	SS5_PROX:INTRON	PHLDB2	ENSG00000144824.21	ENST00000393923.7:ENST00000412622.5:ENST00000431670.7:ENST00000498699.5:ENST00000393925.7:ENST00000481953.5:ENST00000478733.6:ENST00000495180.1	protein_coding	protein_coding	protein_coding	protein_coding	0	70	2	4.20027	5.151645	6.10302	0.0583327	0.0120635	0.175217	0.0745226
chr17	2662280	2662380	6667132	0	+	0.26	[0,0.29]	chr17	667937	1	SS3_PROX	SS3_PROX:INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000576586.5:ENST00000397195.10:ENST00000676201.1:ENST00000575477.5:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000570400.1:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000676456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	59	2	4.54061	5.151625	5.76264	0.0235212	0.00936955	0.110758	0.0652356
chr12	113278935	113279035	5334151	0	+	0.5	(0.485,0.523]	chr12	520557	1	SS5_PROX	SS5_PROX:INTRON	TPCN1	ENSG00000186815.13	ENST00000550785.5:ENST00000335509.11:ENST00000552077.5:ENST00000541517.5:ENST00000392569.8:ENST00000428632.7:ENST00000546781.5:ENST00000551127.5:ENST00000546503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	5.08528	5.151485	5.21769	0.0359739	0.0086528	0.127853	0.0612699
chr1	167223452	167223552	263535	0	+	0.45	(0.419,0.45]	chr1	31137	21	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000559038.5:ENST00000367866.7:ENST00000557909.5:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000442313.5:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	56	2	4.98054	5.151245	5.32195	0.0431627	0.0154548	0.138403	0.0869771
chr2	171699769	171699869	953442	0	+	0.44	(0.419,0.45]	chr2	104789	65	INTRON	INTRON	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000452242.5:ENST00000397119.8:ENST00000410079.7:ENST00000438879.5:ENST00000508530.5:ENST00000409197.5:ENST00000456808.5:ENST00000409317.5:ENST00000409773.5:ENST00000411953.5:ENST00000409453.5:ENST00000445378.5:ENST00000435234.5:ENST00000443458.5:ENST00000412370.5:ENST00000425485.5:ENST00000423910.5:ENST00000430778.5:ENST00000422646.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	4.98054	5.151245	5.32195	0.0431627	0.0154548	0.138403	0.0869771
chrX	70310271	70310370	7901107	0	+	0.434343	(0.419,0.45]	chrX	827512	75	INTRON	INTRON	KIF4A	ENSG00000090889.12	ENST00000374403.4	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.98054	5.151245	5.32195	0.0431627	0.0154548	0.138403	0.0869771
chr12	6339691	6339790	5362104	0	-	0.424242	(0.419,0.45]	chr12	525042	51	INTRON	INTRON	TNFRSF1A	ENSG00000067182.8	ENST00000534885.5:ENST00000162749.7:ENST00000543995.5:ENST00000540022.5:ENST00000539372.5:ENST00000366159.8:ENST00000543048.5:ENST00000440083.6:ENST00000536194.1:ENST00000535958.1:ENST00000538363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	154	2	3.521	5.15114	6.78128	0.026666	2.09196e-4	0.111563	0.0046683
chr8	98544575	98544674	4023353	0	-	0.393939	(0.39,0.419]	chr8	384335	173	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000520440.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	55	2	4.9406	5.1510750000000005	5.36155	0.0658437	0.00648185	0.162385	0.0503748
chr3	61134080	61134180	1804955	0	-	0.48	(0.45,0.485]	chr3	186836	916	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5:ENST00000490952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	122	2	3.8525	5.15083	6.44916	0.00535292	0.00372052	0.0480663	0.0350519
chr19	17482682	17482782	7220759	0	+	0.51	(0.485,0.523]	chr19	738259	116	INTRON	INTRON	SLC27A1	ENSG00000130304.17	ENST00000600277.5:ENST00000598424.5:ENST00000252595.12:ENST00000599380.5:ENST00000600297.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	71	2	4.12717	5.150715	6.17426	0.0545434	0.00754939	0.167824	0.0578091
chr1	236843874	236843973	366304	0	+	0.414141	(0.39,0.419]	chr1	41482	49	INTRON	INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1:ENST00000681937.1:ENST00000366576.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	55	2	5.10551	5.15065	5.19579	0.0469937	0.0112089	0.143232	0.071709
chr7	112100616	112100716	3691514	0	-	0.41	(0.39,0.419]	chr7	354969	961	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	55	2	5.10551	5.15065	5.19579	0.0469937	0.0112089	0.143232	0.071709
chr7	141766157	141766257	3509992	0	+	0.4	(0.39,0.419]	chr7	338351	154	INTRON	INTRON	SSBP1	ENSG00000106028.11	ENST00000465582.5	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.10551	5.15065	5.19579	0.0469937	0.0112089	0.143232	0.071709
chr2	54633366	54633465	800070	0	+	0.363636	(0.36,0.39]	chr2	90886	2	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000333896.5	protein_coding	protein_coding	protein_coding	protein_coding	1	124	2	4.00972	5.1505	6.29128	0.0086512	0.0028904	0.0623824	0.0297318
chr2	61356472	61356571	1156543	0	-	0.434343	(0.419,0.45]	chr2	126767	54	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	126	2	3.95434	5.150335	6.34633	0.00923958	0.0035117	0.0644666	0.0339498
chr12	19328544	19328644	5182211	0	+	0.42	(0.419,0.45]	chr12	504258	55	INTRON	INTRON	PLEKHA5	ENSG00000052126.15	ENST00000429027.7:ENST00000299275.10:ENST00000539256.5:ENST00000538714.5:ENST00000424268.5:ENST00000536974.5:ENST00000538068.1:ENST00000538972.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	57	2	4.69033	5.150320000000001	5.61031	0.0958674	0.004032	0.189038	0.0371291
chr3	49286625	49286725	1771952	0	-	0.45	(0.419,0.45]	chr3	183559	3	SS3_PROX	SS3_PROX:INTRON	USP4	ENSG00000114316.13	ENST00000265560.9:ENST00000351842.8:ENST00000485450.5:ENST00000431357.1:ENST00000475873.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	57	2	4.69033	5.150320000000001	5.61031	0.0958674	0.004032	0.189038	0.0371291
chr12	31494112	31494212	5407221	0	-	0.37	(0.36,0.39]	chr12	529583	135	INTRON	INTRON	DENND5B	ENSG00000170456.16	ENST00000389082.10:ENST00000536562.5:ENST00000354285.8:ENST00000546299.1:ENST00000545147.5:ENST00000544698.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	56	2	4.92735	5.1502099999999995	5.37307	0.0361409	0.0160072	0.127853	0.0894586
chr12	108857027	108857127	5494273	0	-	0.61	(0.58,1]	chr12	540514	2	SS5_PROX	SS5_PROX:INTRON	SSH1	ENSG00000084112.15	ENST00000326495.10:ENST00000551165.5:ENST00000548522.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.88945	5.150195	5.41094	0.0388928	0.00240622	0.131324	0.0261006
chr1	1027737	1027837	992	0	+	0.7	(0.58,1]	chr1	166	49	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.74346	5.150135	5.55681	0.0126042	0.0121457	0.0761905	0.0754623
chr5	1104799	1104898	2608899	0	-	0.686869	(0.58,1]	chr5	259667	102	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.74346	5.150135	5.55681	0.0126042	0.0121457	0.0761905	0.0754623
chr15	101354542	101354642	6363084	0	-	0.36	(0.33,0.36]	chr15	627201	64	INTRON	INTRON	PCSK6	ENSG00000140479.18	ENST00000677364.1:ENST00000676598.1:ENST00000558951.5:ENST00000398185.6:ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000679007.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000559605.1:ENST00000560902.5:ENST00000611967.4:ENST00000615296.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	170	2	4.06558	5.149725	6.23387	0.00810355	7.05085e-4	0.0602166	0.0111409
chr1	1032513	1032612	1040	0	+	0.686869	(0.58,1]	chr1	166	97	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.08534	5.149555	5.21377	0.0230012	0.00549379	0.102982	0.0454065
chr8	65718297	65718396	3987802	0	-	0.454545	(0.45,0.485]	chr8	381575	41	UTR3	UTR3:EXON_MRNA	PDE7A	ENSG00000205268.11	ENST00000401827.8:ENST00000379419.8	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.06138	5.1493649999999995	5.23735	0.0492008	0.00687715	0.146142	0.0526888
chr4	3178546	3178646	2003653	0	+	0.41	(0.39,0.419]	chr4	204461	1	SS5_PROX	SS5_PROX:INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000680291.1:ENST00000510626.5:ENST00000509043.1:ENST00000513326.5:ENST00000513639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	56	2	4.92679	5.149255	5.37172	0.0367885	0.0160946	0.129052	0.0896852
chr14	101824922	101825022	5914047	0	+	0.44	(0.419,0.45]	chr14	578221	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000328724.9:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556493.1:ENST00000553842.1:ENST00000556373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	57	2	4.85365	5.14906	5.44447	0.0364384	0.0197641	0.128173	0.100774
chr10	18560765	18560865	4642336	0	-	0.43	(0.419,0.45]	chr10	443321	84	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	74	2	4.08324	5.1490100000000005	6.21478	0.0727147	0.011428	0.199502	0.0723462
chr17	17591230	17591330	6865589	0	-	0.55	(0.523,0.58]	chr17	695837	3	SS5_PROX	SS5_PROX:INTRON	PEMT	ENSG00000133027.18	ENST00000255389.10:ENST00000435340.6:ENST00000395781.6:ENST00000580147.5:ENST00000421096.5:ENST00000472446.1:ENST00000461404.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	55	2	4.71922	5.1490100000000005	5.5788	0.0721601	0.00262418	0.168159	0.0278348
chr7	2049710	2049810	3530729	0	-	0.56	(0.523,0.58]	chr7	340995	347	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	4.71922	5.1490100000000005	5.5788	0.0721601	0.00262418	0.168159	0.0278348
chr1	43564505	43564604	107084	0	+	0.474747	(0.45,0.485]	chr1	13192	102	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	120	2	4.03897	5.14892	6.25887	0.00748565	0.00230814	0.0576451	0.0255029
chr8	27524961	27525061	3780911	0	+	0.35	(0.33,0.36]	chr8	364209	2	SS3_PROX	SS3_PROX:INTRON	EPHX2	ENSG00000120915.14	ENST00000517536.5:ENST00000520623.5:ENST00000521400.6:ENST00000521780.5:ENST00000380476.7:ENST00000518379.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	55	2	4.99985	5.148695	5.29754	0.0360263	0.0127452	0.127853	0.0773423
chr19	323835	323934	7303114	0	-	0.474747	(0.45,0.485]	chr19	752407	98	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	1	124	2	3.73402	5.14869	6.56336	0.0049945	0.00436001	0.0428203	0.0427656
chr21	43416348	43416446	7676230	0	-	0.571429	(0.523,0.58]	chr21	802488	20	UTR3	UTR3:EXON_MRNA	SIK1	ENSG00000142178.9	ENST00000270162.8	protein_coding	protein_coding	protein_coding	protein_coding	1	144	2	3.18279	5.148595	7.1144	0.0168396	0.00130498	0.0919482	0.0220198
chr17	35115170	35115269	6888445	0	-	0.464646	(0.45,0.485]	chr17	699121	74	INTRON	INTRON	RAD51D	ENSG00000185379.21	ENST00000345365.11:ENST00000588372.5:ENST00000394589.8:ENST00000586044.5:ENST00000335858.11:ENST00000588594.5:ENST00000587977.5:ENST00000590016.5:ENST00000586210.5:ENST00000460118.6:ENST00000587405.5:ENST00000592577.5:ENST00000590631.1:ENST00000415064.6:ENST00000587982.5:ENST00000592430.5:ENST00000585947.5:ENST00000585982.5:ENST00000585343.5:ENST00000586186.2:ENST00000592850.5:ENST00000592928.2:ENST00000589506.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	5.00859	5.148524999999999	5.28846	0.052901	0.00612862	0.14912	0.0489549
chr2	233152060	233152159	1058140	0	+	0.454545	(0.45,0.485]	chr2	115096	41	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.00859	5.148524999999999	5.28846	0.052901	0.00612862	0.14912	0.0489549
chr17	17827981	17828080	6865803	0	-	0.666667	(0.58,1]	chr17	695923	40	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.81862	5.148505	5.47839	0.0145198	0.0102696	0.0823104	0.0678072
chr2	235801701	235801799	1065627	0	+	0.642857	(0.58,1]	chr2	115712	18	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	4.81862	5.148505	5.47839	0.0145198	0.0102696	0.0823104	0.0678072
chr1	9902612	9902712	398761	0	-	0.46	(0.45,0.485]	chr1	45393	95	INTRON	INTRON	CTNNBIP1	ENSG00000178585.15	ENST00000377263.6:ENST00000400904.7	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.1123	5.14834	5.18438	0.0458344	0.00773818	0.142336	0.0568726
chr13	100632017	100632117	5749311	0	-	0.48	(0.45,0.485]	chr13	563476	55	INTRON	INTRON	TMTC4	ENSG00000125247.16	ENST00000342624.10:ENST00000376234.7:ENST00000328767.9:ENST00000489713.5:ENST00000462211.5:ENST00000478272.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	54	2	5.1123	5.14834	5.18438	0.0458344	0.00773818	0.142336	0.0568726
chr18	74835413	74835513	7091631	0	+	0.46	(0.45,0.485]	chr18	722438	309	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.1123	5.14834	5.18438	0.0458344	0.00773818	0.142336	0.0568726
chr6	14129823	14129923	2856430	0	+	0.45	(0.419,0.45]	chr6	279150	114	INTRON	INTRON	CD83	ENSG00000112149.10	ENST00000612003.4:ENST00000379153.4	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.04043	5.148289999999999	5.25615	0.0625897	0.00879729	0.160305	0.0615125
chr22	20124430	20124527	7686887	0	+	0.639175	(0.58,1]	chr22	804214	4	EXON_MRNA	EXON_MRNA:INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000331821.7:ENST00000411892.5:ENST00000423859.5:ENST00000418705.2:ENST00000448394.2:ENST00000486575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	146	2	3.62605	5.148255000000001	6.67046	0.00138924	0.00135763	0.0224546	0.0179324
chr11	35715373	35715473	4841460	0	+	0.45	(0.419,0.45]	chr11	463127	297	INTRON	INTRON	TRIM44	ENSG00000166326.7	ENST00000299413.7	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	5.09133	5.148205	5.20508	0.0586308	0.00979452	0.155565	0.0664239
chr22	19910280	19910380	7765147	0	-	0.45	(0.419,0.45]	chr22	813988	109	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	55	2	5.09133	5.148205	5.20508	0.0586308	0.00979452	0.155565	0.0664239
chr5	1604332	1604432	2610325	0	-	0.44	(0.419,0.45]	chr5	259937	12	INTRON	INTRON	PDCD6P1	ENSG00000188002.11	ENST00000507841.5:ENST00000512335.5:ENST00000692393.1:ENST00000507290.5:ENST00000690809.1:ENST00000688433.1:ENST00000507505.5:ENST00000691115.1:ENST00000502273.7:ENST00000522848.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	55	2	5.09133	5.148205	5.20508	0.0586308	0.00979452	0.155565	0.0664239
chr2	3294103	3294203	1081048	0	-	0.33	(0.29,0.33]	chr2	117633	114	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	119	2	4.29471	5.148160000000001	6.00161	0.00923185	0.00110371	0.0644666	0.0151788
chr16	1740294	1740394	6371342	0	+	0.58	(0.523,0.58]	chr16	628852	2	SS3_PROX	SS3_PROX:INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	309	2	4.76268	5.14808	5.53348	0.00217643	2.47481e-5	0.0293132	9.81427e-4
chr14	68088641	68088741	5861749	0	+	0.54	(0.523,0.58]	chr14	572986	186	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5:ENST00000557045.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	55	2	4.90222	5.1477450000000005	5.39327	0.0277354	0.0125132	0.112851	0.0765738
chr16	84578585	84578684	6650560	0	-	0.525253	(0.523,0.58]	chr16	665366	16	INTRON	INTRON	COTL1	ENSG00000103187.8	ENST00000262428.5:ENST00000564057.1:ENST00000561707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	55	2	4.90222	5.1477450000000005	5.39327	0.0277354	0.0125132	0.112851	0.0765738
chr19	58325461	58325561	7412919	0	-	0.56	(0.523,0.58]	chr19	772004	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000283103	ENSG00000283103.4	ENST00000664481.1:ENST00000634676.2:ENST00000659246.1:ENST00000671228.1:ENST00000658331.1:ENST00000669883.1:ENST00000651375.3:ENST00000669440.2:ENST00000666049.1:ENST00000687313.1	lncRNA	lncRNA	lncRNA	lncRNA	0	55	2	4.90222	5.1477450000000005	5.39327	0.0277354	0.0125132	0.112851	0.0765738
chr2	160408308	160408408	1292630	0	-	0.55	(0.523,0.58]	chr2	138796	4	SS5_PROX	SS5_PROX:INTRON	RBMS1	ENSG00000153250.21	ENST00000348849.8:ENST00000474820.5:ENST00000409289.6:ENST00000409075.5:ENST00000491781.5:ENST00000428519.1:ENST00000477486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	55	2	4.90222	5.1477450000000005	5.39327	0.0277354	0.0125132	0.112851	0.0765738
chr22	48701145	48701245	7751279	0	+	0.61	(0.58,1]	chr22	812283	74	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	4.66416	5.14767	5.63118	0.0144381	0.0109983	0.0833845	0.0708586
chr19	954089	954189	7185387	0	+	0.69	(0.58,1]	chr19	730741	210	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	154	2	3.2803	5.14719	7.01408	0.00374905	6.3791e-4	0.0352817	0.0148365
chr14	103106195	103106284	5921881	0	+	0.505618	(0.485,0.523]	chr14	579221	8	INTRON	INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	118	2	4.00429	5.147175000000001	6.29006	0.00613935	0.00233191	0.0517628	0.0257012
chr17	82184132	82184232	6988229	0	-	0.54	(0.523,0.58]	chr17	714633	2	SS3_PROX	SS3_PROX:INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000327026.7:ENST00000392343.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	4.84569	5.14707	5.44845	0.0610722	0.00361636	0.158506	0.0342681
chr18	48603437	48603537	7057299	0	+	0.53	(0.523,0.58]	chr18	720287	627	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.84569	5.14707	5.44845	0.0610722	0.00361636	0.158506	0.0342681
chr19	37218775	37218829	7252060	0	+	0.537037	(0.523,0.58]	chr19	743296	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF383	ENSG00000188283.12	ENST00000586068.5:ENST00000585441.5:ENST00000586658.1:ENST00000590503.5:ENST00000684119.1:ENST00000589413.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	54	2	4.84569	5.14707	5.44845	0.0610722	0.00361636	0.158506	0.0342681
chr18	48603237	48603337	7057297	0	+	0.54	(0.523,0.58]	chr18	720287	625	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1	protein_coding	protein_coding	protein_coding	protein_coding	2	158	2	3.87652	5.1469249999999995	6.41733	0.00490887	9.51496e-4	0.0457614	0.0136675
chr2	235895643	235895743	1066570	0	+	0.46	(0.45,0.485]	chr2	115730	118	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	4.95056	5.1467849999999995	5.34301	0.0328801	0.0127826	0.122593	0.0773423
chr20	44359643	44359743	7482504	0	+	0.47	(0.45,0.485]	chr20	779618	34	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.95056	5.1467849999999995	5.34301	0.0328801	0.0127826	0.122593	0.0773423
chr11	46099422	46099522	5030615	0	-	0.43	(0.419,0.45]	chr11	486583	68	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000689695.1:ENST00000685188.1:ENST00000532883.5:ENST00000524497.5:ENST00000693122.1:ENST00000529734.5:ENST00000529782.5:ENST00000688222.1:ENST00000690039.1:ENST00000533757.5:ENST00000525438.5:ENST00000692265.1:ENST00000527782.5:ENST00000532010.5:ENST00000528893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	55	2	4.98767	5.146575	5.30548	0.0669167	0.00792071	0.16272	0.057762
chr17	13930618	13930718	6857946	0	-	0.42	(0.419,0.45]	chr17	694957	315	INTRON	INTRON	COX10-DT	ENSG00000236088.11	ENST00000582752.7:ENST00000690301.1:ENST00000662986.1:ENST00000686809.1:ENST00000686296.1:ENST00000602539.2:ENST00000602743.1	lncRNA	lncRNA	lncRNA	lncRNA	0	55	2	4.98767	5.146575	5.30548	0.0669167	0.00792071	0.16272	0.057762
chr9	104829834	104829932	4361425	0	-	0.438776	(0.419,0.45]	chr9	416348	3	INTRON	INTRON	ABCA1	ENSG00000165029.17	ENST00000374736.8:ENST00000678995.1:ENST00000494467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	5.1405	5.14632	5.15214	0.0550015	0.0109324	0.153337	0.0706366
chrX	133937251	133937351	8115540	0	-	0.38	(0.36,0.39]	chrX	845529	1023	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	1108	2	4.76438	5.14632	5.52826	2.81647e-4	1.71894e-5	0.00953601	7.55531e-4
chr10	103812548	103812648	4758230	0	-	0.53	(0.523,0.58]	chr10	454819	108	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.02927	5.146295	5.26332	0.0337698	0.0095202	0.124319	0.0650078
chr10	119394098	119394198	4595190	0	+	0.56	(0.523,0.58]	chr10	439179	128	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.02927	5.146295	5.26332	0.0337698	0.0095202	0.124319	0.0650078
chr14	103451124	103451222	5922760	0	+	0.571429	(0.523,0.58]	chr14	579379	18	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000560731.5:ENST00000676745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	5.02927	5.146295	5.26332	0.0337698	0.0095202	0.124319	0.0650078
chr17	75687682	75687782	6799482	0	+	0.55	(0.523,0.58]	chr17	685907	155	INTRON	INTRON	SAP30BP	ENSG00000161526.15	ENST00000583170.5:ENST00000584667.6:ENST00000355423.7:ENST00000578354.5:ENST00000577292.5:ENST00000542343.5:ENST00000579877.5:ENST00000293208.13:ENST00000579864.5:ENST00000583737.5:ENST00000578288.5:ENST00000580484.5:ENST00000582022.5:ENST00000580322.5:ENST00000583536.5:ENST00000578909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	5.02927	5.146295	5.26332	0.0337698	0.0095202	0.124319	0.0650078
chr3	65420135	65420235	1809651	0	-	0.54	(0.523,0.58]	chr3	187193	183	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.02927	5.146295	5.26332	0.0337698	0.0095202	0.124319	0.0650078
chr3	128396169	128396269	1563061	0	+	0.57	(0.523,0.58]	chr3	165321	374	INTRON	INTRON	EEFSEC	ENSG00000132394.11	ENST00000254730.11:ENST00000483457.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.02927	5.146295	5.26332	0.0337698	0.0095202	0.124319	0.0650078
chr4	6299560	6299659	2010597	0	+	0.545455	(0.523,0.58]	chr4	205141	40	INTRON	INTRON	WFS1	ENSG00000109501.15	ENST00000673991.1:ENST00000503569.5:ENST00000226760.5:ENST00000682275.1:ENST00000506362.2:ENST00000684087.1:ENST00000683395.1:ENST00000673642.1:ENST00000507765.1:ENST00000513395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	5.02927	5.146295	5.26332	0.0337698	0.0095202	0.124319	0.0650078
chr4	185731397	185731497	2371512	0	-	0.55	(0.523,0.58]	chr4	237031	404	INTRON	INTRON	SORBS2	ENSG00000154556.19	ENST00000284776.11:ENST00000695409.1:ENST00000319471.13:ENST00000437304.6:ENST00000449407.6:ENST00000355634.9:ENST00000451974.6:ENST00000393528.7:ENST00000487184.2:ENST00000695410.1:ENST00000319454.10:ENST00000695411.1:ENST00000470685.5:ENST00000445343.5:ENST00000439914.5:ENST00000444771.5:ENST00000450341.5:ENST00000430503.5:ENST00000445115.5:ENST00000457247.5:ENST00000456596.5:ENST00000425679.5:ENST00000439049.5:ENST00000451958.5:ENST00000444781.5:ENST00000414724.5:ENST00000419063.5:ENST00000393523.6:ENST00000420158.5:ENST00000421639.5:ENST00000493709.5:ENST00000457934.5:ENST00000431902.5:ENST00000415274.5:ENST00000435480.5:ENST00000432655.5:ENST00000451701.5:ENST00000428330.5:ENST00000464975.5:ENST00000464819.5:ENST00000478249.5:ENST00000452351.5:ENST00000429056.5:ENST00000463104.5:ENST00000456060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	5.02927	5.146295	5.26332	0.0337698	0.0095202	0.124319	0.0650078
chr17	39995625	39995724	6732280	0	+	0.494949	(0.485,0.523]	chr17	676982	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PSMD3	ENSG00000108344.15	ENST00000264639.9:ENST00000415039.7:ENST00000540504.2:ENST00000485835.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	121	2	3.7763	5.146235	6.51617	0.00420211	0.00406194	0.0413652	0.0380601
chr13	113053901	113054001	5656175	0	+	0.52	(0.485,0.523]	chr13	555186	2	SS3_PROX	SS3_PROX:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	4.8987	5.1461950000000005	5.39369	0.0275819	0.0129327	0.112782	0.0778105
chr18	13446218	13446315	7025038	0	+	0.515464	(0.485,0.523]	chr18	717583	20	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000610087.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	55	2	4.8987	5.1461950000000005	5.39369	0.0275819	0.0129327	0.112782	0.0778105
chr19	4334841	4334940	7312819	0	-	0.494949	(0.485,0.523]	chr19	754660	4	INTRON	INTRON	STAP2	ENSG00000178078.12	ENST00000594605.6:ENST00000600324.5:ENST00000599736.5:ENST00000601482.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	4.8987	5.1461950000000005	5.39369	0.0275819	0.0129327	0.112782	0.0778105
chr5	70127585	70127674	2687471	0	-	0.494382	(0.485,0.523]	chr5	265321	5	INTRON	INTRON	NAIPP2	ENSG00000179978.11	ENST00000511830.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	55	2	4.8987	5.1461950000000005	5.39369	0.0275819	0.0129327	0.112782	0.0778105
chr6	44843767	44843867	3138356	0	-	0.31	(0.29,0.33]	chr6	306644	135	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000674231.1:ENST00000371460.5:ENST00000371458.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	4.85285	5.1461950000000005	5.43954	0.0567079	0.00401582	0.154343	0.0371286
chr1	183473310	183473400	301139	0	+	0.411111	(0.39,0.419]	chr1	34237	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	55	2	4.88366	5.14569	5.40772	0.0707789	0.00585126	0.168159	0.0474117
chr14	89336554	89336654	6027468	0	-	0.52	(0.485,0.523]	chr14	591456	29	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	54	2	4.84611	5.1455	5.44489	0.0608067	0.00377098	0.158506	0.0353672
chr19	18443358	18443457	7347614	0	-	0.515152	(0.485,0.523]	chr19	761434	8	UTR3	UTR3:EXON_MRNA	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	118	2	3.97769	5.144915	6.31214	0.00589975	0.00250115	0.0506158	0.0268837
chr19	39158940	39159040	7259598	0	+	0.5	(0.485,0.523]	chr19	744161	17	INTRON	INTRON	PAK4	ENSG00000130669.17	ENST00000602004.1:ENST00000599470.5:ENST00000360442.8:ENST00000321944.8:ENST00000593480.5:ENST00000358301.7:ENST00000593690.5:ENST00000599386.5:ENST00000599657.5	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.02573	5.1447400000000005	5.26375	0.0335928	0.00985879	0.124319	0.0664239
chr22	24985848	24985948	7698883	0	+	0.52	(0.485,0.523]	chr22	805865	327	INTRON	INTRON	KIAA1671	ENSG00000197077.14	ENST00000358431.8:ENST00000406486.8	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.02573	5.1447400000000005	5.26375	0.0335928	0.00985879	0.124319	0.0664239
chr5	21503201	21503300	2392608	0	+	0.494949	(0.485,0.523]	chr5	239071	6	INTRON	INTRON	GUSBP1	ENSG00000183666.18	ENST00000508260.5:ENST00000449061.3:ENST00000685731.1:ENST00000688956.1:ENST00000692922.1:ENST00000686144.1:ENST00000607545.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	54	2	5.02573	5.1447400000000005	5.26375	0.0335928	0.00985879	0.124319	0.0664239
chr18	62888267	62888367	7081772	0	+	0.31	(0.29,0.33]	chr18	721998	273	INTRON	INTRON	PHLPP1	ENSG00000081913.14	ENST00000262719.10:ENST00000588452.5:ENST00000487409.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	122	2	3.72807	5.14435	6.56063	0.00487126	0.00330556	0.0420427	0.0368376
chr8	503089	503189	3931435	0	-	0.54	(0.523,0.58]	chr8	375980	81	INTRON	INTRON	TDRP	ENSG00000180190.13	ENST00000523656.5:ENST00000324079.11	protein_coding	protein_coding	protein_coding	protein_coding	1	117	2	4.06733	5.144299999999999	6.22127	0.00699217	0.00192956	0.0555241	0.0224824
chr16	896165	896265	6530983	0	-	0.68	(0.58,1]	chr16	648670	27	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000566627.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	4.6951	5.14417	5.59324	0.0521567	0.0014734	0.148503	0.0185589
chr4	888252	888351	2178485	0	-	0.636364	(0.58,1]	chr4	220626	26	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	53	2	4.6951	5.14417	5.59324	0.0521567	0.0014734	0.148503	0.0185589
chr7	77932520	77932620	3402544	0	+	0.47	(0.45,0.485]	chr7	328621	28	INTRON	INTRON	PHTF2	ENSG00000006576.17	ENST00000422959.7:ENST00000416283.6:ENST00000307305.12:ENST00000424760.5:ENST00000275575.11:ENST00000248550.7:ENST00000454592.5:ENST00000479515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	57	2	4.74641	5.144135	5.54186	0.0243502	0.0193126	0.106588	0.0994526
chr2	239277880	239277979	1391487	0	-	0.676768	(0.58,1]	chr2	148740	263	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	360	2	4.96936	5.143965	5.31857	3.41837e-4	1.72582e-5	0.0105776	7.58161e-4
chr1	153611480	153611577	591008	0	-	0.412371	(0.39,0.419]	chr1	68765	23	INTRON	INTRON	S100A16	ENSG00000188643.11	ENST00000368706.9:ENST00000474991.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	4.63037	5.14391	5.65745	0.0963077	0.00330348	0.189169	0.0323993
chr21	41830324	41830424	7673625	0	-	0.4	(0.39,0.419]	chr21	801978	16	INTRON	INTRON	PRDM15	ENSG00000141956.14	ENST00000422911.6:ENST00000441787.5:ENST00000449395.6:ENST00000398548.6:ENST00000447016.6:ENST00000269844.5:ENST00000491486.5:ENST00000489661.5:ENST00000496124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	57	2	4.63037	5.14391	5.65745	0.0963077	0.00330348	0.189169	0.0323993
chr5	97036315	97036415	2489743	0	+	0.4	(0.39,0.419]	chr5	248102	79	UTR3	UTR3:EXON_MRNA	LNPEP	ENSG00000113441.16	ENST00000231368.10	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.63037	5.14391	5.65745	0.0963077	0.00330348	0.189169	0.0323993
chr12	85015506	85015601	5466785	0	-	0.389474	(0.36,0.39]	chr12	537425	11	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TSPAN19	ENSG00000231738.11	ENST00000525452.2:ENST00000532498.7:ENST00000529820.1:ENST00000532628.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	57	2	4.79458	5.143409999999999	5.49224	0.0304242	0.0207145	0.11845	0.102713
chr17	272706	272806	6821001	0	-	0.39	(0.36,0.39]	chr17	689572	104	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000570954.1:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	4.79458	5.143409999999999	5.49224	0.0304242	0.0207145	0.11845	0.102713
chr18	62229397	62229496	7077856	0	+	0.363636	(0.36,0.39]	chr18	721644	4	INTRON	INTRON	RELCH	ENSG00000134444.15	ENST00000644646.2:ENST00000256858.10:ENST00000398130.6:ENST00000587725.5:ENST00000592479.5:ENST00000591227.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	0	57	2	4.79458	5.143409999999999	5.49224	0.0304242	0.0207145	0.11845	0.102713
chr17	14326163	14326263	6683041	0	+	0.56	(0.523,0.58]	chr17	670741	208	INTRON	INTRON	HS3ST3B1	ENSG00000125430.9	ENST00000360954.3:ENST00000466596.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	117	2	4.04167	5.143045	6.24442	0.00670944	0.00206682	0.0541591	0.0235758
chr10	75481105	75481205	4520969	0	+	0.43	(0.419,0.45]	chr10	432249	295	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.9329	5.143035	5.35317	0.0716557	0.00714797	0.168159	0.0541241
chr13	113028643	113028742	5655915	0	+	0.424242	(0.419,0.45]	chr13	555157	17	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486806.1:ENST00000473345.5	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.9329	5.143035	5.35317	0.0716557	0.00714797	0.168159	0.0541241
chr3	67615584	67615684	1819692	0	-	0.44	(0.419,0.45]	chr3	187525	56	INTRON	INTRON	SUCLG2	ENSG00000172340.15	ENST00000493112.5:ENST00000307227.10:ENST00000492795.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.9329	5.143035	5.35317	0.0716557	0.00714797	0.168159	0.0541241
chr4	709659	709758	1993724	0	+	0.434343	(0.419,0.45]	chr4	203088	33	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	55	2	4.9329	5.143035	5.35317	0.0716557	0.00714797	0.168159	0.0541241
chr9	133700728	133700828	4427573	0	-	0.45	(0.419,0.45]	chr9	423058	40	INTRON	INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000371868.5:ENST00000427237.6	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.9329	5.143035	5.35317	0.0716557	0.00714797	0.168159	0.0541241
chr10	18570158	18570258	4642430	0	-	0.38	(0.36,0.39]	chr10	443321	178	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	2	169	2	3.3654	5.14297	6.92054	0.00481068	0.00289488	0.0417063	0.03418
chr5	109105218	109105318	2502454	0	+	0.36	(0.33,0.36]	chr5	248802	43	INTRON	INTRON	FER	ENSG00000151422.14	ENST00000281092.9:ENST00000504143.6:ENST00000438717.6:ENST00000618353.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	149	2	3.93079	5.14295	6.35511	0.0115564	4.93432e-4	0.0730088	0.00865935
chr16	85269463	85269563	6515763	0	+	0.47	(0.45,0.485]	chr16	646377	417	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	58	2	4.67139	5.142849999999999	5.61431	0.0223378	0.0217589	0.108193	0.100615
chr10	132572343	132572442	4617184	0	+	0.616162	(0.58,1]	chr10	441139	338	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.89007	5.142765	5.39546	0.0168207	0.00872525	0.0884836	0.0612699
chr11	70574329	70574429	5060016	0	-	0.6	(0.58,1]	chr11	492663	710	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	53	2	4.89007	5.142765	5.39546	0.0168207	0.00872525	0.0884836	0.0612699
chr19	1289884	1289983	7186903	0	+	0.585859	(0.58,1]	chr19	731132	32	INTRON	INTRON	EFNA2	ENSG00000099617.4	ENST00000215368.4	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.89007	5.142765	5.39546	0.0168207	0.00872525	0.0884836	0.0612699
chr20	515624	515724	7512796	0	-	0.3	(0.29,0.33]	chr20	784124	49	INTRON	INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000644710.1:ENST00000647155.1:ENST00000644003.1:ENST00000645249.1:ENST00000647026.1:ENST00000400217.7:ENST00000647348.1:ENST00000643600.1:ENST00000643680.1:ENST00000460062.7:ENST00000643968.1:ENST00000644177.1:ENST00000609525.2:ENST00000645091.1:ENST00000609606.6:ENST00000608066.6:ENST00000646908.1:ENST00000645187.1:ENST00000642160.1:ENST00000608490.2:ENST00000643910.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	120	2	4.39747	5.14274	5.88801	0.0112593	8.30133e-4	0.0720977	0.012496
chr7	155718743	155718843	3519274	0	+	0.45	(0.419,0.45]	chr7	339831	3	SS5_PROX	SS5_PROX:INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	5.09718	5.1426099999999995	5.18804	0.051668	0.012235	0.148503	0.0757339
chr15	67104222	67104322	6139460	0	+	0.43	(0.419,0.45]	chr15	603944	48	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1:ENST00000559092.1:ENST00000560175.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	176	2	3.20016	5.14237	7.08458	0.00752259	0.00263222	0.0558305	0.0325876
chr10	79115117	79115217	4532506	0	+	0.59	(0.58,1]	chr10	432420	455	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.02314	5.14226	5.26138	0.021217	0.00638322	0.0996078	0.0501889
chr2	206798621	206798720	1002029	0	+	0.444444	(0.419,0.45]	chr2	110055	4	EXON_LNCRNA	EXON_LNCRNA	ENSG00000229321	ENSG00000229321.2	ENST00000658889.1:ENST00000658291.1	lncRNA	lncRNA	lncRNA	lncRNA	0	56	2	4.7549	5.142245	5.52959	0.0888907	0.00484244	0.183874	0.0418176
chr6	105053645	105053745	2967831	0	+	0.45	(0.419,0.45]	chr6	291241	268	INTRON	INTRON	LIN28B	ENSG00000187772.8	ENST00000635857.1:ENST00000637759.1:ENST00000345080.5	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.7549	5.142245	5.52959	0.0888907	0.00484244	0.183874	0.0418176
chr1	53246357	53246451	485992	0	-	0.425532	(0.419,0.45]	chr1	57820	5	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LRP8	ENSG00000157193.18	ENST00000306052.12:ENST00000661457.1:ENST00000668448.1:ENST00000667377.1:ENST00000658277.1:ENST00000653810.1:ENST00000657047.1:ENST00000662198.1:ENST00000657895.1:ENST00000668071.1:ENST00000529670.6:ENST00000480045.6:ENST00000654834.1:ENST00000653217.1:ENST00000669432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	175	2	4.04558	5.141565	6.23755	0.0110181	8.84023e-4	0.0708586	0.0130201
chr22	20790692	20790792	7767839	0	-	0.43	(0.419,0.45]	chr22	814548	246	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000466162.5:ENST00000484220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	56	2	4.91849	5.141220000000001	5.36395	0.0407485	0.0174488	0.135868	0.0928044
chr16	78990211	78990311	6504321	0	+	0.48	(0.45,0.485]	chr16	645717	2099	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	4.89685	5.14119	5.38553	0.0614781	0.00490471	0.158506	0.0422077
chr21	36955758	36955858	7670022	0	-	0.46	(0.45,0.485]	chr21	801345	71	INTRON	INTRON	HLCS	ENSG00000159267.17	ENST00000674895.3:ENST00000336648.8:ENST00000612277.4:ENST00000399120.5:ENST00000675307.1:ENST00000675057.1:ENST00000448340.5:ENST00000427746.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	4.89685	5.14119	5.38553	0.0614781	0.00490471	0.158506	0.0422077
chr5	81216365	81216465	2713384	0	-	0.46	(0.45,0.485]	chr5	267153	58	INTRON	INTRON	CKMT2-AS1	ENSG00000247572.9	ENST00000663674.1:ENST00000503483.6:ENST00000511495.1	lncRNA	lncRNA	lncRNA	lncRNA	0	54	2	4.89685	5.14119	5.38553	0.0614781	0.00490471	0.158506	0.0422077
chr18	77112156	77112256	7181442	0	-	0.59	(0.58,1]	chr18	730186	65	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1:ENST00000583798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	4.58025	5.1410800000000005	5.70191	0.0172566	0.00964351	0.0923809	0.0659937
chr8	9771222	9771315	3754888	0	+	0.591398	(0.58,1]	chr8	360881	6	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.58025	5.1410800000000005	5.70191	0.0172566	0.00964351	0.0923809	0.0659937
chr2	239348280	239348380	1392193	0	-	0.53	(0.523,0.58]	chr2	148752	238	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	118	2	3.90605	5.141025	6.376	0.00529293	0.00295607	0.047841	0.0300958
chr12	109976069	109976168	5495650	0	-	0.353535	(0.33,0.36]	chr12	540768	82	INTRON	INTRON	GIT2	ENSG00000139436.22	ENST00000355312.8:ENST00000361006.9:ENST00000457474.6:ENST00000553118.5:ENST00000551209.5:ENST00000550186.5:ENST00000547815.5:ENST00000320063.10:ENST00000551455.5:ENST00000551721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	5.00642	5.140995	5.27557	0.0542065	0.00707628	0.151733	0.0540197
chr20	49664098	49664198	7575677	0	-	0.36	(0.33,0.36]	chr20	791530	70	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.00642	5.140995	5.27557	0.0542065	0.00707628	0.151733	0.0540197
chr10	27139140	27139238	4651940	0	-	0.336735	(0.33,0.36]	chr10	444170	24	INTRON	INTRON	YME1L1	ENSG00000136758.20	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000491542.6:ENST00000427324.5:ENST00000396296.7	protein_coding	protein_coding	protein_coding	protein_coding	1	146	2	3.6082	5.14085	6.6735	0.0200207	2.05279e-4	0.0971059	0.00461335
chr10	91952163	91952261	4548584	0	+	0.357143	(0.33,0.36]	chr10	434020	2	INTRON	INTRON	BTAF1	ENSG00000095564.15	ENST00000265990.12	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.11012	5.14082	5.17152	0.04702	0.00887848	0.143232	0.0618231
chr14	31300104	31300204	5953235	0	-	0.47	(0.45,0.485]	chr14	583371	25	INTRON	INTRON	HEATR5A	ENSG00000129493.15	ENST00000543095.7:ENST00000538864.6	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.0722	5.14063	5.20906	0.0399616	0.00988295	0.133954	0.0664239
chr7	129756606	129756701	3479564	0	+	0.463158	(0.45,0.485]	chr7	336271	16	UTR3	UTR3:EXON_MRNA	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000393230.6:ENST00000353868.5	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.0722	5.14063	5.20906	0.0399616	0.00988295	0.133954	0.0664239
chr9	123526391	123526491	4397840	0	-	0.47	(0.45,0.485]	chr9	419652	404	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	5.0722	5.14063	5.20906	0.0399616	0.00988295	0.133954	0.0664239
chr2	239344085	239344185	1392151	0	-	0.67	(0.58,1]	chr2	148752	196	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	111	2	3.85993	5.140355	6.42078	0.00251049	0.00230938	0.0302623	0.026941
chr7	27817038	27817138	3333519	0	+	0.35	(0.33,0.36]	chr7	322797	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TAX1BP1	ENSG00000106052.14	ENST00000543117.5:ENST00000433216.6:ENST00000265393.10:ENST00000409980.5:ENST00000416801.6:ENST00000396319.7:ENST00000457186.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	4.77355	5.140255	5.50696	0.0735809	0.00418696	0.17026	0.0379935
chr22	28283302	28283402	7777859	0	-	0.36	(0.33,0.36]	chr22	815718	506	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7:ENST00000612946.4	protein_coding	protein_coding	protein_coding	protein_coding	1	121	2	4.11609	5.139695	6.1633	0.00914439	0.00205621	0.0642449	0.0235218
chr9	134412691	134412791	4261560	0	+	0.68	(0.58,1]	chr9	406352	32	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000481739.2:ENST00000356384.4:ENST00000672570.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	113	2	3.75733	5.139655	6.52198	0.0033279	0.00186556	0.0325742	0.0269723
chr1	7500300	7500400	15613	0	+	0.52	(0.485,0.523]	chr1	1895	320	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.52142	5.13963	5.75784	0.0273555	0.0154142	0.119337	0.0849828
chr16	84578684	84578783	6650561	0	-	0.50505	(0.485,0.523]	chr16	665366	17	INTRON	INTRON	COTL1	ENSG00000103187.8	ENST00000262428.5:ENST00000564057.1:ENST00000561707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	60	2	4.52142	5.13963	5.75784	0.0273555	0.0154142	0.119337	0.0849828
chr1	44246446	44246545	459637	0	-	0.555556	(0.523,0.58]	chr1	55307	40	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	56	2	4.58058	5.13946	5.69834	0.0860403	0.00194036	0.181766	0.0225083
chr9	93661444	93661540	4184512	0	+	0.385417	(0.36,0.39]	chr9	397767	5	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.69932	5.1394	5.57948	0.0877431	0.00393844	0.183437	0.0367306
chr16	32771598	32771696	6442263	0	+	0.367347	(0.36,0.39]	chr16	638922	1	INTRON	INTRON	HERC2P5	ENSG00000260644.6	ENST00000562687.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	0	55	2	4.82572	5.139374999999999	5.45303	0.0751666	0.00525731	0.172839	0.044445
chr7	102043342	102043442	3436248	0	+	0.37	(0.36,0.39]	chr7	332534	148	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	55	2	4.82572	5.139374999999999	5.45303	0.0751666	0.00525731	0.172839	0.044445
chrX	55923699	55923799	7885724	0	+	0.34	(0.33,0.36]	chrX	827041	145	INTRON	INTRON	ENSG00000227486	ENSG00000227486.3	ENST00000452532.1:ENST00000666613.1:ENST00000653318.2:ENST00000658575.1:ENST00000669152.1:ENST00000655874.1:ENST00000661602.1:ENST00000686723.1:ENST00000687344.1:ENST00000691133.1:ENST00000686181.1:ENST00000685349.1:ENST00000693084.1:ENST00000691819.1	lncRNA	lncRNA	lncRNA	lncRNA	0	55	2	4.93777	5.139295000000001	5.34082	0.0338211	0.0144674	0.124319	0.0833845
chrY	14534733	14534833	8140782	0	+	0.35	(0.33,0.36]	chrY	848284	94	INTRON	INTRON	NLGN4Y	ENSG00000165246.15	ENST00000643089.1:ENST00000471252.1:ENST00000382872.5:ENST00000355905.6:ENST00000382868.5:ENST00000476359.1:ENST00000645399.1:ENST00000684976.1:ENST00000481089.1:ENST00000339174.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	4.93777	5.139295000000001	5.34082	0.0338211	0.0144674	0.124319	0.0833845
chr16	29271913	29272013	6433556	0	+	0.64	(0.58,1]	chr16	636745	198	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	66	2	4.18518	5.13887	6.09256	0.0374658	0.00452436	0.139793	0.0436138
chr18	76437147	76437247	7179491	0	-	0.58	(0.523,0.58]	chr18	730080	565	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	1	121	2	3.72444	5.138865	6.55329	0.00470358	0.00382069	0.0413976	0.0398603
chr2	233176075	233176174	1058394	0	+	0.373737	(0.36,0.39]	chr2	115144	46	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493632.5:ENST00000465281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	55	2	4.98942	5.1386	5.28778	0.0407706	0.0141427	0.135868	0.0833845
chr3	195112153	195112253	1981132	0	-	0.57	(0.523,0.58]	chr3	201655	181	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000437101.5:ENST00000473200.1:ENST00000429994.5:ENST00000356740.5:ENST00000418940.5:ENST00000491138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	54	2	4.78384	5.138529999999999	5.49322	0.0663135	0.00324246	0.162385	0.0319521
chr2	149724519	149724619	921191	0	+	0.41	(0.39,0.419]	chr2	102788	1301	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	0	56	2	4.69798	5.138450000000001	5.57892	0.088901	0.00396694	0.183874	0.0368027
chr1	7499500	7499600	15605	0	+	0.5	(0.485,0.523]	chr1	1895	312	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	4.33772	5.138389999999999	5.93906	0.03818	0.0113657	0.140822	0.0723462
chr3	39147022	39147122	1739959	0	-	0.49	(0.485,0.523]	chr3	180187	3	SS3_PROX	SS3_PROX:INTRON	CSRNP1	ENSG00000144655.15	ENST00000273153.10:ENST00000514182.1	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	4.33772	5.138389999999999	5.93906	0.03818	0.0113657	0.140822	0.0723462
chr7	11097894	11097993	3320868	0	+	0.333333	(0.33,0.36]	chr7	321852	350	INTRON	INTRON	PHF14	ENSG00000106443.17	ENST00000642461.1:ENST00000634607.2:ENST00000403050.7:ENST00000521747.5:ENST00000423760.6:ENST00000481418.5:ENST00000470665.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	4.95163	5.13827	5.32491	0.0583482	0.00634179	0.155373	0.0501889
chr1	202534948	202535048	319162	0	+	0.37	(0.36,0.39]	chr1	35879	322	INTRON	INTRON	PPP1R12B	ENSG00000077157.22	ENST00000391959.5:ENST00000608999.6:ENST00000290419.9:ENST00000491336.5:ENST00000466273.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	4.86249	5.138195	5.4139	0.0340874	0.0181775	0.125059	0.0955836
chr2	32377187	32377287	747962	0	+	0.34	(0.33,0.36]	chr2	87154	2	SS3_PROX	SS3_PROX:INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.11654	5.137924999999999	5.15931	0.043896	0.00998589	0.139792	0.0667545
chr2	55023987	55024086	1148267	0	-	0.343434	(0.33,0.36]	chr2	125466	96	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.11654	5.137924999999999	5.15931	0.043896	0.00998589	0.139792	0.0667545
chr4	146495764	146495864	2336383	0	-	0.4	(0.39,0.419]	chr4	234371	171	INTRON	INTRON	SLC10A7	ENSG00000120519.16	ENST00000432059.6:ENST00000335472.12:ENST00000693222.1:ENST00000507030.5:ENST00000511315.2:ENST00000507560.5:ENST00000685433.1:ENST00000394059.8:ENST00000511374.5:ENST00000513583.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	123	2	4.12373	5.137895	6.15206	0.0111378	0.00217716	0.0715198	0.0243974
chr11	70802927	70803026	5062312	0	-	0.525253	(0.523,0.58]	chr11	492707	40	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5:ENST00000460048.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	119	2	3.8181	5.1377999999999995	6.4575	0.0045605	0.0037097	0.0438198	0.0349741
chr7	47572294	47572394	3589542	0	-	0.57	(0.523,0.58]	chr7	346159	148	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.7629	5.137685	5.51247	0.0230387	0.0167014	0.102982	0.0917029
chr7	91941547	91941647	3412368	0	+	0.55	(0.523,0.58]	chr7	329503	4	SS5_PROX	SS5_PROX:INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000394564.5:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	56	2	4.7629	5.137685	5.51247	0.0230387	0.0167014	0.102982	0.0917029
chrX	68838116	68838216	7895968	0	+	0.56	(0.523,0.58]	chrX	827301	1	SS3_PROX	SS3_PROX:INTRON	EFNB1	ENSG00000090776.6	ENST00000204961.5	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.7629	5.137685	5.51247	0.0230387	0.0167014	0.102982	0.0917029
chr2	108587914	108588013	871487	0	+	0.434343	(0.419,0.45]	chr2	98292	72	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1:ENST00000695519.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.87598	5.13766	5.39934	0.0768574	0.00646489	0.174882	0.0503748
chr6	169621951	169622051	3304076	0	-	0.45	(0.419,0.45]	chr6	319826	79	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	55	2	4.87598	5.13766	5.39934	0.0768574	0.00646489	0.174882	0.0503748
chr9	123859465	123859565	4401187	0	-	0.33	(0.29,0.33]	chr9	419726	611	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.79099	5.13765	5.48431	0.061706	0.00360762	0.158854	0.0342681
chr12	1284253	1284353	5153230	0	+	0.41	(0.39,0.419]	chr12	500882	207	INTRON	INTRON	ERC1	ENSG00000082805.21	ENST00000543086.7:ENST00000360905.9:ENST00000690948.1:ENST00000542302.6:ENST00000546231.6:ENST00000347735.10:ENST00000397203.7:ENST00000440394.7:ENST00000545948.5:ENST00000589028.6:ENST00000355446.9:ENST00000538971.6:ENST00000588412.5:ENST00000543263.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	55	2	4.98886	5.137645	5.28643	0.041475	0.0142222	0.136301	0.0833845
chr11	71484546	71484645	4887708	0	+	0.555556	(0.523,0.58]	chr11	471504	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NADSYN1	ENSG00000172890.13	ENST00000319023.7:ENST00000525200.5:ENST00000529840.5:ENST00000530055.5:ENST00000526039.6:ENST00000531236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	4.96714	5.137544999999999	5.30795	0.0315825	0.0108948	0.120781	0.0706366
chr10	74160731	74160831	4511775	0	+	0.48	(0.45,0.485]	chr10	431901	90	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000478611.2:ENST00000673352.1	protein_coding	protein_coding	protein_coding	protein_coding	1	119	2	4.03897	5.13753	6.23609	0.00778782	0.00230814	0.0590114	0.0255029
chr2	11796480	11796579	722568	0	+	0.575758	(0.523,0.58]	chr2	84447	6	INTRON	INTRON	LPIN1	ENSG00000134324.12	ENST00000449576.6:ENST00000425416.6:ENST00000396097.5:ENST00000396099.5:ENST00000256720.6:ENST00000674199.1:ENST00000404113.6:ENST00000454151.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	57	2	4.68785	5.137325000000001	5.5868	0.020474	0.0194172	0.0994526	0.0979776
chr7	79418670	79418770	3626186	0	-	0.29	[0,0.29]	chr7	349238	26	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000628997.1:ENST00000636234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	113	2	4.2153	5.13729	6.05928	0.00532344	0.00116026	0.0478836	0.0157704
chr17	38919675	38919775	6730078	0	+	0.6	(0.58,1]	chr17	676475	10	UTR3	UTR3:EXON_MRNA	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000318008.11:ENST00000435347.7	protein_coding	protein_coding	protein_coding	protein_coding	2	145	2	3.60392	5.13719	6.67046	0.00148337	0.00135763	0.0224546	0.0186585
chr1	31334187	31334286	79698	0	+	0.444444	(0.419,0.45]	chr1	9104	147	INTRON	INTRON	ZCCHC17	ENSG00000121766.16	ENST00000618216.4:ENST00000546109.5:ENST00000616393.4:ENST00000616859.4:ENST00000615916.4:ENST00000479629.5:ENST00000373714.5:ENST00000344147.10:ENST00000627541.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	5.04004	5.137055	5.23407	0.0486006	0.0137308	0.145074	0.0814223
chr8	127948636	127948736	3919346	0	+	0.51	(0.485,0.523]	chr8	374241	53	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1	lncRNA	lncRNA	lncRNA	lncRNA	0	54	2	4.78426	5.13696	5.48966	0.0660335	0.0033837199999999998	0.162385	0.0328791
chr9	129501505	129501602	4250792	0	+	0.494845	(0.485,0.523]	chr9	404726	27	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	54	2	4.78426	5.13696	5.48966	0.0660335	0.0033837199999999998	0.162385	0.0328791
chr2	24798291	24798389	729860	0	+	0.428571	(0.419,0.45]	chr2	85137	40	INTRON	INTRON	CENPO	ENSG00000138092.11	ENST00000473476.5:ENST00000473706.5:ENST00000491031.5:ENST00000380834.7:ENST00000486527.6:ENST00000260662.2:ENST00000498362.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	154	2	3.37525	5.136835	6.89842	0.0333115	1.51593e-4	0.123922	0.00370696
chr10	18553770	18553870	4642266	0	-	0.35	(0.33,0.36]	chr10	443321	14	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.73368	5.13667	5.53966	0.0251076	0.0216127	0.107672	0.105648
chr11	88301738	88301837	5104995	0	-	0.464646	(0.45,0.485]	chr11	495867	7	INTRON	INTRON	CTSC	ENSG00000109861.17	ENST00000678554.1:ENST00000679224.1:ENST00000677661.1:ENST00000678506.1:ENST00000676612.1:ENST00000677802.1:ENST00000227266.10:ENST00000678395.1:ENST00000533897.2:ENST00000677208.1:ENST00000678520.1:ENST00000678464.1:ENST00000678915.1:ENST00000527018.6:ENST00000678065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	55	2	4.7111	5.136565	5.56203	0.0781398	0.00322991	0.175203	0.0319521
chr17	643294	643394	6823609	0	-	0.47	(0.45,0.485]	chr17	689804	101	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000680944.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000681830.1:ENST00000679959.1:ENST00000680114.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000570650.2:ENST00000679680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	55	2	4.7111	5.136565	5.56203	0.0781398	0.00322991	0.175203	0.0319521
chr18	79751672	79751771	7100819	0	+	0.484848	(0.45,0.485]	chr18	723089	18	INTRON	INTRON	CTDP1	ENSG00000060069.18	ENST00000613122.5:ENST00000075430.11:ENST00000591598.5:ENST00000299543.9:ENST00000590599.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	55	2	4.7111	5.136565	5.56203	0.0781398	0.00322991	0.175203	0.0319521
chr1	17678680	17678780	54998	0	+	0.49	(0.485,0.523]	chr1	5603	137	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	54	2	4.96361	5.13599	5.30837	0.0314138	0.0112713	0.12069	0.071709
chr10	48040437	48040536	4680770	0	-	0.515152	(0.485,0.523]	chr10	446508	10	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	0	54	2	4.96361	5.13599	5.30837	0.0314138	0.0112713	0.12069	0.071709
chr13	113059792	113059892	5656235	0	+	0.4	(0.39,0.419]	chr13	555189	50	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.56871	5.135960000000001	5.70321	0.0315133	0.0226065	0.127889	0.102982
chr7	75927430	75927530	3396729	0	+	0.43	(0.419,0.45]	chr7	328054	41	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000449920.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	58	2	4.7145	5.1359449999999995	5.55739	0.0310506	0.0256236	0.119758	0.115966
chr10	132597222	132597322	4617433	0	+	0.45	(0.419,0.45]	chr10	441139	587	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.62273	5.135885	5.64904	0.103601	0.00368884	0.197541	0.0348088
chr10	75439193	75439293	4520549	0	+	0.54	(0.523,0.58]	chr10	432247	3	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.01677	5.135400000000001	5.25403	0.0482765	0.00573579	0.144601	0.0467736
chr12	64631102	64631202	5250571	0	+	0.55	(0.523,0.58]	chr12	511993	81	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	5.01677	5.135400000000001	5.25403	0.0482765	0.00573579	0.144601	0.0467736
chr2	134193540	134193640	896166	0	+	0.54	(0.523,0.58]	chr2	101196	660	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	5.01677	5.135400000000001	5.25403	0.0482765	0.00573579	0.144601	0.0467736
chr3	105669038	105669137	1860947	0	-	0.474747	(0.45,0.485]	chr3	189731	95	INTRON	INTRON	CBLB	ENSG00000114423.23	ENST00000645759.1:ENST00000394030.8:ENST00000476370.1:ENST00000646499.1:ENST00000645425.1:ENST00000642241.1:ENST00000407712.1:ENST00000646825.1:ENST00000643322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	147	2	3.92656	5.13539	6.34422	0.0114063	4.24458e-4	0.0723462	0.00777807
chr1	43423916	43424016	106294	0	+	0.54	(0.523,0.58]	chr1	12951	2	SS3_PROX	SS3_PROX:INTRON	SZT2	ENSG00000198198.17	ENST00000562955.2:ENST00000634258.3:ENST00000470139.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	5.06957	5.135305	5.20104	0.0448011	0.00648051	0.140478	0.0503748
chr13	98539096	98539196	5747912	0	-	0.56	(0.523,0.58]	chr13	563357	172	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	5.06957	5.135305	5.20104	0.0448011	0.00648051	0.140478	0.0503748
chr18	46259858	46259956	7056571	0	+	0.55102	(0.523,0.58]	chr18	720269	57	INTRON	INTRON	C18orf25	ENSG00000152242.11	ENST00000615052.5:ENST00000619301.4	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.06957	5.135305	5.20104	0.0448011	0.00648051	0.140478	0.0503748
chr3	128623971	128624067	1909902	0	-	0.53125	(0.523,0.58]	chr3	193938	12	INTRON	INTRON	RPN1	ENSG00000163902.12	ENST00000296255.8:ENST00000497289.5	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.06957	5.135305	5.20104	0.0448011	0.00648051	0.140478	0.0503748
chr18	74514596	74514690	7088609	0	+	0.43617	(0.419,0.45]	chr18	722320	5	INTRON	INTRON	CNDP2	ENSG00000133313.15	ENST00000579847.5:ENST00000324262.9:ENST00000324301.12:ENST00000584581.5:ENST00000579624.1:ENST00000583695.1:ENST00000581600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	152	2	3.63519	5.13489	6.63459	0.0223138	3.11318e-4	0.102264	0.00624487
chr2	161328055	161328155	939080	0	+	0.32	(0.29,0.33]	chr2	103725	88	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.65868	5.13475	5.61082	0.0735584	0.00264971	0.17026	0.027979
chr7	101442985	101443085	3432793	0	+	0.47	(0.45,0.485]	chr7	332431	225	INTRON	INTRON	COL26A1	ENSG00000160963.14	ENST00000313669.12:ENST00000613501.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.83755	5.134635	5.43172	0.06646	0.00440365	0.162385	0.0393688
chr1	27488485	27488585	431236	0	-	0.46	(0.45,0.485]	chr1	50973	592	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	1	120	2	3.88066	5.13457	6.38848	0.0059625	0.00346544	0.0506812	0.0335664
chr17	72558223	72558322	6963893	0	-	0.444444	(0.419,0.45]	chr17	710389	238	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	171	2	2.88408	5.134535	7.38499	0.0674152	3.82846e-5	0.163486	0.00134767
chr7	94909597	94909697	3418804	0	+	0.32	(0.29,0.33]	chr7	330357	3	SS3_PROX	SS3_PROX:INTRON	PPP1R9A	ENSG00000158528.12	ENST00000413325.1:ENST00000433360.6:ENST00000340694.8:ENST00000424654.5:ENST00000422324.1:ENST00000433881.5	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.07676	5.134460000000001	5.19216	0.0412683	0.00712176	0.136301	0.0541241
chr8	122891124	122891223	3910757	0	+	0.30303	(0.29,0.33]	chr8	373489	272	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6:ENST00000534247.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.07676	5.134460000000001	5.19216	0.0412683	0.00712176	0.136301	0.0541241
chrX	2879571	2879669	7831331	0	+	0.27551	[0,0.29]	chrX	822236	19	INTRON	INTRON	GYG2	ENSG00000056998.20	ENST00000381163.7:ENST00000381161.5:ENST00000398806.8:ENST00000353656.10:ENST00000639373.1:ENST00000381157.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	5.10693	5.134455	5.16198	0.0292928	0.00622515	0.116079	0.0496245
chr22	48697563	48697662	7751243	0	+	0.434343	(0.419,0.45]	chr22	812283	38	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	4.78575	5.134425	5.4831	0.0345118	0.0224633	0.126025	0.108193
chr10	75499192	75499292	4521150	0	+	0.43	(0.419,0.45]	chr10	432249	476	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	168	2	3.76388	5.134405	6.50493	0.00711588	0.00186132	0.0560048	0.0219261
chr1	820113	820213	379711	0	-	0.54	(0.523,0.58]	chr1	42663	416	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000634337.2:ENST00000635509.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	55	2	4.83424	5.134175000000001	5.43411	0.026041	0.0144272	0.109673	0.0833845
chr16	85314074	85314174	6516210	0	+	0.57	(0.523,0.58]	chr16	646381	50	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.83424	5.134175000000001	5.43411	0.026041	0.0144272	0.109673	0.0833845
chr3	126345387	126345486	1907122	0	-	0.575758	(0.523,0.58]	chr3	193539	11	INTRON	INTRON	KLF15	ENSG00000163884.4	ENST00000296233.4	protein_coding	protein_coding	protein_coding	protein_coding	1	117	2	4.30157	5.134155	5.96674	0.0109075	0.00101591	0.0707085	0.0143256
chr17	72558721	72558821	6963898	0	-	0.52	(0.485,0.523]	chr17	710389	243	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	127	2	4.71757	5.134055	5.55054	0.0215787	3.1699e-4	0.100612	0.00632787
chr19	41328030	41328129	7381079	0	-	0.656566	(0.58,1]	chr19	765964	250	INTRON	INTRON	TGFB1	ENSG00000105329.11	ENST00000598758.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	52	2	4.76284	5.133905	5.50497	0.0471737	0.00187297	0.143232	0.0219434
chr6	325166	325265	2824079	0	+	0.585859	(0.58,1]	chr6	277201	1	UTR5	UTR5:EXON_MRNA:INTRON	DUSP22	ENSG00000112679.15	ENST00000603296.5:ENST00000344450.9:ENST00000603453.5:ENST00000605315.5:ENST00000603881.5:ENST00000603795.5:ENST00000605035.5:ENST00000605863.5:ENST00000419235.7:ENST00000603005.5:ENST00000603726.5:ENST00000603290.1:ENST00000605391.5:ENST00000604971.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	52	2	4.76284	5.133905	5.50497	0.0471737	0.00187297	0.143232	0.0219434
chr1	149500418	149500506	238534	0	+	0.465909	(0.45,0.485]	chr1	26576	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF19	ENSG00000271383.8	ENST00000651566.2:ENST00000611931.4:ENST00000612881.4:ENST00000369227.7:ENST00000426482.3	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.01267	5.133884999999999	5.2551	0.0373953	0.011221	0.130656	0.071709
chr18	62879378	62879478	7081683	0	+	0.47	(0.45,0.485]	chr18	721998	184	INTRON	INTRON	PHLPP1	ENSG00000081913.14	ENST00000262719.10:ENST00000588452.5:ENST00000487409.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	5.01267	5.133884999999999	5.2551	0.0373953	0.011221	0.130656	0.071709
chr11	64145857	64145957	5049036	0	-	0.5	(0.485,0.523]	chr11	490257	191	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	53	2	5.01719	5.1338349999999995	5.25048	0.0480495	0.0059614	0.144601	0.0479866
chr12	420823	420922	5148393	0	+	0.515152	(0.485,0.523]	chr12	500517	18	INTRON	INTRON	CCDC77	ENSG00000120647.10	ENST00000540180.5:ENST00000422000.5:ENST00000543504.5:ENST00000540344.5:ENST00000412006.6:ENST00000239830.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	5.06999	5.1337399999999995	5.19749	0.0445854	0.00672953	0.140478	0.0519464
chr9	87633346	87633446	4176784	0	+	0.51	(0.485,0.523]	chr9	397147	278	INTRON	INTRON	DAPK1	ENSG00000196730.13	ENST00000358077.9:ENST00000469640.6:ENST00000472284.5:ENST00000469067.5:ENST00000408954.8:ENST00000622514.4:ENST00000496522.5:ENST00000472344.1:ENST00000491893.5:ENST00000489291.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	53	2	5.06999	5.1337399999999995	5.19749	0.0445854	0.00672953	0.140478	0.0519464
chr9	114156412	114156512	4225709	0	+	0.52	(0.485,0.523]	chr9	400739	4	SS5_PROX	SS5_PROX:INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.06999	5.1337399999999995	5.19749	0.0445854	0.00672953	0.140478	0.0519464
chr1	44244364	44244463	459616	0	-	0.575758	(0.523,0.58]	chr1	55307	19	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	53	2	4.96197	5.13356	5.30515	0.0521137	0.00509102	0.148503	0.0433513
chr19	48908863	48908962	7280434	0	+	0.555556	(0.523,0.58]	chr19	748048	26	INTRON	INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000424608.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	4.96197	5.13356	5.30515	0.0521137	0.00509102	0.148503	0.0433513
chr1	12584546	12584646	402448	0	-	0.45	(0.419,0.45]	chr1	46222	35	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	374	2	4.89478	5.13354	5.3723	0.00108756	3.00412e-4	0.0198535	0.00607383
chr9	114193009	114193108	4226080	0	+	0.555556	(0.523,0.58]	chr9	400764	96	INTRON	INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8:ENST00000451716.5:ENST00000494090.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	144	2	3.35121	5.133495	6.91578	0.0284134	6.24234e-5	0.114906	0.00192539
chr19	56595628	56595728	7295035	0	+	0.56	(0.523,0.58]	chr19	751226	2	SS5_PROX	SS5_PROX:INTRON	ZNF71	ENSG00000197951.10	ENST00000328070.10:ENST00000599599.7:ENST00000594944.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	5.1205	5.13326	5.14602	0.0416463	0.00734367	0.136301	0.0550721
chr3	9769044	9769140	1682429	0	-	0.53125	(0.523,0.58]	chr3	175743	9	INTRON	INTRON	CAMK1	ENSG00000134072.11	ENST00000256460.8:ENST00000397277.6:ENST00000411972.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	5.1205	5.13326	5.14602	0.0416463	0.00734367	0.136301	0.0550721
chr12	27001953	27002051	5402282	0	-	0.357143	(0.33,0.36]	chr12	528926	18	INTRON	INTRON	TM7SF3	ENSG00000064115.11	ENST00000343028.9:ENST00000542667.5:ENST00000535819.1:ENST00000543655.5:ENST00000543803.5:ENST00000542019.1:ENST00000539741.5:ENST00000543088.5:ENST00000535423.5:ENST00000512808.2:ENST00000545600.1:ENST00000539399.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	54	2	5.05937	5.13312	5.20687	0.041040600000000003	0.0112642	0.136289	0.071709
chr2	69981920	69982019	1177773	0	-	0.565657	(0.523,0.58]	chr2	128115	54	INTRON	INTRON	PCBP1-AS1	ENSG00000179818.16	ENST00000419542.5:ENST00000682294.1:ENST00000684630.1:ENST00000630975.3:ENST00000435880.6:ENST00000629339.3:ENST00000667874.1:ENST00000628659.2:ENST00000628308.2:ENST00000626515.2:ENST00000625447.2:ENST00000628305.2:ENST00000625625.2:ENST00000625864.2:ENST00000630522.2:ENST00000628837.2:ENST00000627325.2:ENST00000629909.2:ENST00000626343.2:ENST00000625838.2:ENST00000629084.2:ENST00000629603.2:ENST00000625215.2:ENST00000627189.2:ENST00000629836.2:ENST00000626898.2:ENST00000628883.2:ENST00000629533.2:ENST00000627181.2:ENST00000630214.2:ENST00000627918.2:ENST00000628374.2:ENST00000627327.2:ENST00000626495.2:ENST00000629605.2:ENST00000626370.2:ENST00000626834.2:ENST00000628920.2:ENST00000626735.2:ENST00000625691.2:ENST00000628201.2:ENST00000626842.2:ENST00000630457.2:ENST00000629184.2:ENST00000628551.2:ENST00000630746.2:ENST00000627398.2:ENST00000457076.5:ENST00000625783.2:ENST00000625490.2:ENST00000627050.2:ENST00000630759.2:ENST00000628667.2:ENST00000626632.2:ENST00000631110.2:ENST00000626609.2:ENST00000625888.2:ENST00000629506.2:ENST00000630985.2:ENST00000413436.5:ENST00000628147.2:ENST00000631107.2:ENST00000629415.2:ENST00000418564.5:ENST00000630280.2:ENST00000415222.5:ENST00000628322.2:ENST00000626440.2:ENST00000628455.2	lncRNA	lncRNA	lncRNA	lncRNA	0	58	2	4.60868	5.1330849999999995	5.65749	0.0226775	0.0182707	0.108193	0.0921579
chr9	134382250	134382350	4261248	0	+	0.58	(0.523,0.58]	chr9	406325	17	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2:ENST00000356384.4:ENST00000672570.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	58	2	4.60868	5.1330849999999995	5.65749	0.0226775	0.0182707	0.108193	0.0921579
chr13	98259301	98259401	5634824	0	+	0.31	(0.29,0.33]	chr13	553480	141	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	2	203	2	3.75366	5.13283	6.512	0.00605534	2.36916e-4	0.0514018	0.00511363
chr1	1023658	1023757	951	0	+	0.616162	(0.58,1]	chr1	166	8	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.95814	5.132805	5.30747	0.0196049	0.0074469	0.0955413	0.0553519
chr11	117808992	117809092	5134973	0	-	0.61	(0.58,1]	chr11	498595	66	INTRON	INTRON	FXYD2	ENSG00000137731.14	ENST00000514385.1:ENST00000532119.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	4.95814	5.132805	5.30747	0.0196049	0.0074469	0.0955413	0.0553519
chr14	105214795	105214893	6058145	0	-	0.602041	(0.58,1]	chr14	594783	15	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000392557.8:ENST00000446501.6:ENST00000635152.1:ENST00000547374.5:ENST00000551787.5:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	52	2	4.95814	5.132805	5.30747	0.0196049	0.0074469	0.0955413	0.0553519
chr19	1173024	1173123	7305783	0	-	0.686869	(0.58,1]	chr19	753058	40	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.95814	5.132805	5.30747	0.0196049	0.0074469	0.0955413	0.0553519
chr19	45265110	45265210	7272253	0	+	0.63	(0.58,1]	chr19	746868	2	SS5_PROX	SS5_PROX:INTRON	MARK4	ENSG00000007047.16	ENST00000587566.5:ENST00000262891.9:ENST00000300843.8:ENST00000592762.5:ENST00000590909.1:ENST00000588533.5:ENST00000588621.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	4.95814	5.132805	5.30747	0.0196049	0.0074469	0.0955413	0.0553519
chr6	158017795	158017895	3059670	0	+	0.64	(0.58,1]	chr6	297371	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.95814	5.132805	5.30747	0.0196049	0.0074469	0.0955413	0.0553519
chr1	226147221	226147321	674726	0	-	0.3	(0.29,0.33]	chr1	79408	4	SS3_PROX	SS3_PROX:INTRON	ACBD3	ENSG00000182827.9	ENST00000366812.6	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.96914	5.1327	5.29626	0.0481918	0.005619	0.144601	0.0462026
chr9	14803364	14803464	4279740	0	-	0.52	(0.485,0.523]	chr9	408919	11	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	4.83072	5.132625	5.43453	0.0258944	0.0148956	0.109555	0.0847741
chr9	134369774	134369874	4261121	0	+	0.51	(0.485,0.523]	chr9	406311	428	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	55	2	4.83072	5.132625	5.43453	0.0258944	0.0148956	0.109555	0.0847741
chr13	113520733	113520833	5658486	0	+	0.31	(0.29,0.33]	chr13	555714	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	5.1277	5.132429999999999	5.13716	0.0382902	0.00805226	0.131324	0.0582806
chr6	12066211	12066311	2854681	0	+	0.31	(0.29,0.33]	chr6	278961	271	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.1277	5.132429999999999	5.13716	0.0382902	0.00805226	0.131324	0.0582806
chr6	131016541	131016640	3261729	0	-	0.353535	(0.33,0.36]	chr6	315599	8	INTRON	INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000392427.7:ENST00000368128.6:ENST00000527411.5:ENST00000525271.5:ENST00000528179.5:ENST00000526333.1:ENST00000530707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	124	2	3.72192	5.132325	6.54273	0.00550077	0.0047107	0.0454065	0.044852
chr21	45499745	45499844	7631302	0	+	0.515152	(0.485,0.523]	chr21	797812	17	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	1	141	2	3.72524	5.13206	6.53888	0.0150536	2.02788e-4	0.0840434	0.0045746
chr17	1545809	1545909	6830601	0	-	0.52	(0.485,0.523]	chr17	690579	24	INTRON	INTRON	PITPNA	ENSG00000174238.16	ENST00000313486.12:ENST00000575288.5:ENST00000574991.5:ENST00000576722.5:ENST00000575895.5:ENST00000576761.5:ENST00000576010.6:ENST00000573231.1:ENST00000573056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	4.96239	5.13199	5.30159	0.0518747	0.00529578	0.148503	0.044517
chr19	39157747	39157847	7259586	0	+	0.49	(0.485,0.523]	chr19	744161	5	INTRON	INTRON	PAK4	ENSG00000130669.17	ENST00000602004.1:ENST00000599470.5:ENST00000360442.8:ENST00000321944.8:ENST00000593480.5:ENST00000358301.7:ENST00000593690.5:ENST00000599386.5:ENST00000599657.5	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.96239	5.13199	5.30159	0.0518747	0.00529578	0.148503	0.044517
chr7	79260283	79260383	3624599	0	-	0.49	(0.485,0.523]	chr7	349228	2515	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000628997.1:ENST00000636424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	53	2	4.96239	5.13199	5.30159	0.0518747	0.00529578	0.148503	0.044517
chr9	114588518	114588618	4227459	0	+	0.51	(0.485,0.523]	chr9	401133	4	SS5_PROX	SS5_PROX:INTRON	ATP6V1G1	ENSG00000136888.8	ENST00000677115.1:ENST00000677452.1:ENST00000678234.1:ENST00000374050.4:ENST00000473413.1:ENST00000677498.1:ENST00000679150.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	4.96239	5.13199	5.30159	0.0518747	0.00529578	0.148503	0.044517
chr14	63486248	63486348	5992401	0	-	0.48	(0.45,0.485]	chr14	587804	320	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	160	2	3.5117	5.131755	6.75181	0.00308946	0.00289032	0.0354967	0.0297318
chr3	188819035	188819135	1658472	0	+	0.39	(0.36,0.39]	chr3	173846	584	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000459897.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	5.04949	5.1317450000000004	5.214	0.0563927	0.00887999	0.154188	0.0618231
chr1	153770097	153770197	247222	0	+	0.51	(0.485,0.523]	chr1	28364	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	INTS3	ENSG00000143624.14	ENST00000318967.7:ENST00000435409.6:ENST00000481797.5:ENST00000512605.4:ENST00000476843.5:ENST00000503133.5:ENST00000368670.5:ENST00000368669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	53	2	5.12092	5.1317	5.14248	0.0414411	0.00761903	0.136301	0.0561937
chr10	112697765	112697865	4588978	0	+	0.29	[0,0.29]	chr10	438722	284	INTRON	INTRON	VTI1A	ENSG00000151532.14	ENST00000393077.3:ENST00000432306.5	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.94223	5.131690000000001	5.32115	0.0379936	0.00426525	0.131324	0.0384752
chr18	76418665	76418765	7179306	0	-	0.23	[0,0.29]	chr18	730080	380	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.94223	5.131690000000001	5.32115	0.0379936	0.00426525	0.131324	0.0384752
chr2	121478025	121478125	1262506	0	-	0.25	[0,0.29]	chr2	136083	77	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	52	2	4.94223	5.131690000000001	5.32115	0.0379936	0.00426525	0.131324	0.0384752
chr11	87219451	87219551	4912203	0	+	0.61	(0.58,1]	chr11	474130	617	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	5.00585	5.13158	5.25731	0.0323732	0.00358178	0.121593	0.0342681
chr2	240511660	240511760	1394547	0	-	0.62	(0.58,1]	chr2	149000	4	SS5_PROX	SS5_PROX:INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000391988.3	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	5.00585	5.13158	5.25731	0.0323732	0.00358178	0.121593	0.0342681
chr7	220251	220351	3305857	0	+	0.63	(0.58,1]	chr7	320161	109	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	5.00585	5.13158	5.25731	0.0323732	0.00358178	0.121593	0.0342681
chr14	70024945	70025045	5872632	0	+	0.47	(0.45,0.485]	chr14	573363	11	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	4.22352	5.131565	6.03961	0.0496712	0.0108974	0.160725	0.0707085
chr3	111948233	111948332	1536452	0	+	0.464646	(0.45,0.485]	chr3	163015	25	INTRON	INTRON	PHLDB2	ENSG00000144824.21	ENST00000393923.7:ENST00000412622.5:ENST00000431670.7:ENST00000498699.5:ENST00000393925.7:ENST00000481953.5:ENST00000478733.6:ENST00000495180.1	protein_coding	protein_coding	protein_coding	protein_coding	0	67	2	4.22352	5.131565	6.03961	0.0496712	0.0108974	0.160725	0.0707085
chr13	20496793	20496893	5662808	0	-	0.49	(0.485,0.523]	chr13	556208	69	INTRON	INTRON	CRYL1	ENSG00000165475.15	ENST00000643035.1:ENST00000644593.1:ENST00000298248.12:ENST00000644872.1:ENST00000382812.5:ENST00000643750.1:ENST00000644153.1:ENST00000643887.1:ENST00000644167.1:ENST00000646414.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	58	2	4.60518	5.131545	5.65791	0.0233371	0.0181582	0.110098	0.0921579
chr11	64144861	64144961	5049026	0	-	0.59	(0.58,1]	chr11	490257	181	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	51	2	5.0607	5.131465	5.20223	0.029633	0.00411607	0.116079	0.0374453
chr11	70721100	70721200	5061492	0	-	0.59	(0.58,1]	chr11	492701	32	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	5.0607	5.131465	5.20223	0.029633	0.00411607	0.116079	0.0374453
chr7	76996530	76996629	3398765	0	+	0.646465	(0.58,1]	chr7	328286	58	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	51	2	5.0607	5.131465	5.20223	0.029633	0.00411607	0.116079	0.0374453
chr3	136299256	136299354	1574571	0	+	0.285714	[0,0.29]	chr3	167002	8	INTRON	INTRON	PCCB	ENSG00000114054.14	ENST00000251654.9:ENST00000490504.5:ENST00000483687.5:ENST00000468777.5:ENST00000462637.5:ENST00000466072.5:ENST00000484181.5:ENST00000482086.5:ENST00000471595.5:ENST00000469217.5:ENST00000478469.5:ENST00000474833.5:ENST00000475214.5:ENST00000473073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	52	2	5.10476	5.13133	5.1579	0.0269673	0.0071055	0.112113	0.0541241
chr16	81666112	81666209	6509967	0	+	0.463918	(0.45,0.485]	chr16	645960	18	UTR3	UTR3:EXON_MRNA:INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8:ENST00000566462.2	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.41963	5.131105	5.84258	0.0355247	0.0151085	0.137983	0.0841543
chr12	89678002	89678101	5470531	0	-	0.363636	(0.36,0.39]	chr12	537853	215	INTRON	INTRON	ATP2B1	ENSG00000070961.16	ENST00000428670.8:ENST00000551310.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.99672	5.1309000000000005	5.26508	0.0604395	0.00795848	0.158506	0.0578938
chr7	23410764	23410863	3552608	0	-	0.383838	(0.36,0.39]	chr7	343215	53	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	4.99672	5.1309000000000005	5.26508	0.0604395	0.00795848	0.158506	0.0578938
chr17	807146	807245	6824892	0	-	0.636364	(0.58,1]	chr17	690019	15	INTRON	INTRON	NXN	ENSG00000167693.17	ENST00000336868.8:ENST00000575801.5:ENST00000571684.5:ENST00000537628.6	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.74346	5.130795	5.51813	0.013519	0.0121457	0.0792526	0.0754623
chr3	73005139	73005239	1502811	0	+	0.59	(0.58,1]	chr3	160766	66	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000495566.1:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	4.74346	5.130795	5.51813	0.013519	0.0121457	0.0792526	0.0754623
chrX	30876180	30876279	8001347	0	-	0.393939	(0.39,0.419]	chrX	836764	40	INTRON	INTRON	TAB3	ENSG00000157625.16	ENST00000378933.5:ENST00000288422.4:ENST00000378932.6	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.04815	5.130795	5.21344	0.0572698	0.00893514	0.154343	0.0620271
chr10	99738312	99738411	4566995	0	+	0.363636	(0.36,0.39]	chr10	435733	16	INTRON	INTRON	CUTC	ENSG00000119929.13	ENST00000493385.5:ENST00000370476.10:ENST00000471520.5:ENST00000370472.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	54	2	5.1004	5.130725	5.16105	0.0526991	0.00993384	0.14912	0.0666221
chr2	86761136	86761236	846256	0	+	0.39	(0.36,0.39]	chr2	95479	72	INTRON	INTRON	RMND5A	ENSG00000153561.13	ENST00000283632.5	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.1004	5.130725	5.16105	0.0526991	0.00993384	0.14912	0.0666221
chr16	85235565	85235665	6515424	0	+	0.74	(0.58,1]	chr16	646377	78	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	60	2	4.3962	5.130555	5.86491	0.0250928	0.00707578	0.114418	0.0558168
chr9	116565199	116565299	4375268	0	-	0.43	(0.419,0.45]	chr9	418111	773	INTRON	INTRON	ASTN2	ENSG00000148219.18	ENST00000313400.9:ENST00000361209.6:ENST00000373986.7:ENST00000341734.8:ENST00000288520.9:ENST00000361477.8	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.69033	5.13042	5.57051	0.0958674	0.00441471	0.189038	0.0393688
chr21	41830622	41830722	7673628	0	-	0.41	(0.39,0.419]	chr21	801978	19	INTRON	INTRON	PRDM15	ENSG00000141956.14	ENST00000422911.6:ENST00000441787.5:ENST00000449395.6:ENST00000398548.6:ENST00000447016.6:ENST00000269844.5:ENST00000491486.5:ENST00000489661.5:ENST00000496124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	4.99538	5.129944999999999	5.26451	0.0613573	0.00800901	0.158506	0.0580954
chr3	19982326	19982424	1420996	0	+	0.397959	(0.39,0.419]	chr3	152600	36	INTRON	INTRON	RAB5A	ENSG00000144566.11	ENST00000273047.9:ENST00000446547.5:ENST00000422242.1:ENST00000473608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	4.99538	5.129944999999999	5.26451	0.0613573	0.00800901	0.158506	0.0580954
chr19	5818191	5818291	7195568	0	+	0.58	(0.523,0.58]	chr19	733105	124	INTRON	INTRON	NRTN	ENSG00000171119.3	ENST00000303212.3	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.905	5.12976	5.35452	0.0563605	0.00453096	0.154188	0.0400651
chr13	50516985	50517084	5597793	0	+	0.444444	(0.419,0.45]	chr13	551677	42	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000485007.5:ENST00000470726.7:ENST00000479420.5:ENST00000474630.6:ENST00000491482.5:ENST00000647700.1:ENST00000484869.6:ENST00000469095.6:ENST00000462427.2:ENST00000470593.5:ENST00000460525.6	lncRNA	lncRNA	lncRNA	lncRNA	0	55	2	4.98054	5.12961	5.27868	0.0457732	0.0154548	0.142336	0.0869771
chr16	85233865	85233965	6515407	0	+	0.64	(0.58,1]	chr16	646377	61	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	55	2	4.66416	5.129315	5.59447	0.0144381	0.0117666	0.0833845	0.0737098
chr16	978751	978851	6531826	0	-	0.64	(0.58,1]	chr16	648726	79	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000545827.6:ENST00000570014.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	5.11355	5.12926	5.14497	0.0271806	0.00474658	0.112113	0.0413976
chr16	87740964	87741059	6656491	0	-	0.610526	(0.58,1]	chr16	665896	1	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	5.11355	5.12926	5.14497	0.0271806	0.00474658	0.112113	0.0413976
chr19	1997463	1997563	7307768	0	-	0.71	(0.58,1]	chr19	753491	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	BTBD2	ENSG00000133243.10	ENST00000255608.9:ENST00000589200.3:ENST00000590646.5:ENST00000587742.5:ENST00000588395.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	5.11355	5.12926	5.14497	0.0271806	0.00474658	0.112113	0.0413976
chr1	43557131	43557231	107010	0	+	0.54	(0.523,0.58]	chr1	13192	28	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	5.08882	5.129255000000001	5.16969	0.0387762	0.00834774	0.131324	0.0598672
chr12	132565491	132565591	5353273	0	+	0.53	(0.523,0.58]	chr12	523680	49	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1:ENST00000539264.5:ENST00000543360.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	5.08882	5.129255000000001	5.16969	0.0387762	0.00834774	0.131324	0.0598672
chr15	83040027	83040127	6342390	0	-	0.38	(0.36,0.39]	chr15	625223	93	INTRON	INTRON	BTBD1	ENSG00000064726.10	ENST00000261721.9:ENST00000379403.2:ENST00000559652.5:ENST00000560015.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	55	2	4.92735	5.129205	5.33106	0.0383628	0.0160072	0.131324	0.0894586
chr1	51760191	51760286	124021	0	+	0.547368	(0.523,0.58]	chr1	15412	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000532975.5:ENST00000534040.5:ENST00000527631.5:ENST00000531828.5:ENST00000361556.9:ENST00000473207.6:ENST00000533884.5:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5:ENST00000528603.5:ENST00000475697.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	157	2	3.92449	5.128975	6.33346	0.00571732	8.29185e-4	0.0498083	0.0124862
chr20	63212069	63212168	7585885	0	-	0.30303	(0.29,0.33]	chr20	792947	79	INTRON	INTRON	YTHDF1	ENSG00000149658.18	ENST00000370339.8:ENST00000370334.4	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.91217	5.128895	5.34562	0.0522244	0.00501126	0.148503	0.0429092
chr18	69789411	69789511	7087079	0	+	0.33	(0.29,0.33]	chr18	722173	81	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.07997	5.128435	5.1769	0.035586	0.00913217	0.127529	0.0632458
chr5	116131368	116131468	2510282	0	+	0.4	(0.39,0.419]	chr5	249627	383	INTRON	INTRON	COMMD10	ENSG00000145781.9	ENST00000507356.5:ENST00000274458.9:ENST00000632434.1:ENST00000515539.5:ENST00000506589.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	4.92679	5.1282499999999995	5.32971	0.0390381	0.0160946	0.131575	0.0896852
chr6	145864891	145864991	3285931	0	-	0.39	(0.36,0.39]	chr6	317440	4	SS3_PROX	SS3_PROX:INTRON	SHPRH	ENSG00000146414.17	ENST00000417762.5	protein_coding	protein_coding	protein_coding	protein_coding	1	122	2	4.00972	5.128245	6.24677	0.00931845	0.0028904	0.0649153	0.0297318
chr2	232870007	232870093	1057072	0	+	0.5	(0.485,0.523]	chr2	115006	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNORC	ENSG00000182600.10	ENST00000448993.1:ENST00000409533.5:ENST00000409230.5	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.90542	5.12819	5.35096	0.0561086	0.0047171	0.154188	0.0413976
chr9	134343526	134343626	4260858	0	+	0.56	(0.523,0.58]	chr9	406311	165	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	61	2	4.43597	5.12818	5.82039	0.0313935	0.0139724	0.127822	0.0805959
chr17	57350022	57350122	6760705	0	+	0.39	(0.36,0.39]	chr17	682104	393	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	54	2	4.94194	5.128175	5.31441	0.064883	0.00715023	0.162218	0.0541241
chr4	6299064	6299163	2010592	0	+	0.606061	(0.58,1]	chr4	205141	35	INTRON	INTRON	WFS1	ENSG00000109501.15	ENST00000673991.1:ENST00000503569.5:ENST00000226760.5:ENST00000682275.1:ENST00000506362.2:ENST00000684087.1:ENST00000683395.1:ENST00000673642.1:ENST00000507765.1:ENST00000513395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	53	2	4.81862	5.12807	5.43752	0.0156166	0.0102696	0.0849828	0.0678072
chr13	113214864	113214963	5657356	0	+	0.565657	(0.523,0.58]	chr13	555523	44	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000488558.2:ENST00000375440.9:ENST00000474116.5:ENST00000494985.5:ENST00000463426.5:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	155	2	3.7402	5.12797	6.51574	0.00409625	0.00139933	0.0413652	0.0179906
chr3	45596687	45596787	1460118	0	+	0.54	(0.523,0.58]	chr3	155844	4	SS5_PROX	SS5_PROX:INTRON	LIMD1	ENSG00000144791.10	ENST00000465039.5:ENST00000440097.5:ENST00000273317.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	4.71922	5.127935	5.53665	0.0721601	0.00291382	0.168159	0.0298557
chr17	7112337	7112436	6847757	0	-	0.616162	(0.58,1]	chr17	693423	31	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	486	2	4.56694	5.1278950000000005	5.68885	1.42677e-4	1.79013e-5	0.00666284	7.78672e-4
chr18	2686598	2686697	7001400	0	+	0.363636	(0.36,0.39]	chr18	715609	121	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	5.10608	5.12783	5.14958	0.0493212	0.0111429	0.146207	0.071709
chr2	158466104	158466204	935041	0	+	0.37	(0.36,0.39]	chr2	103367	74	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	54	2	5.10608	5.12783	5.14958	0.0493212	0.0111429	0.146207	0.071709
chr1	44241922	44242022	459591	0	-	0.51	(0.485,0.523]	chr1	55303	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	53	2	5.08528	5.1277	5.17012	0.038581	0.0086528	0.131324	0.0612699
chr16	81622004	81622102	6509517	0	+	0.489796	(0.485,0.523]	chr16	645925	12	EXON_MRNA	EXON_MRNA:INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	53	2	5.08528	5.1277	5.17012	0.038581	0.0086528	0.131324	0.0612699
chr10	18562763	18562863	4642356	0	-	0.41	(0.39,0.419]	chr10	443321	104	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	63	2	4.39622	5.12762	5.85902	0.042449	0.0177874	0.149195	0.0914273
chr1	23393578	23393678	424251	0	-	0.44	(0.419,0.45]	chr1	49808	3	SS5_PROX	SS5_PROX:INTRON	TCEA3	ENSG00000204219.11	ENST00000450454.7:ENST00000476978.2	protein_coding	protein_coding	protein_coding	protein_coding	1	124	2	4.15996	5.12757	6.09518	0.0138177	0.00210951	0.0803169	0.0239744
chr18	74645619	74645719	7089730	0	+	0.4	(0.39,0.419]	chr18	722426	41	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000582337.5:ENST00000309902.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	1	122	2	4.05528	5.127385	6.19949	0.0103045	0.00258839	0.0684871	0.027634
chr10	31862557	31862657	4661170	0	-	0.4	(0.39,0.419]	chr10	444971	5	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.55943	5.127305	5.69518	0.104562	0.00302238	0.19835	0.0305643
chr1	596998	597098	377439	0	-	0.39	(0.36,0.39]	chr1	42484	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000634833.2:ENST00000419394.2:ENST00000440196.3:ENST00000641296.1:ENST00000634337.2:ENST00000635509.2:ENST00000357876.6:ENST00000648019.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	61	2	4.48559	5.12726	5.76893	0.036329	0.0200694	0.139793	0.0971995
chr17	17821619	17821719	6865737	0	-	0.6	(0.58,1]	chr17	695915	7	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	111	2	3.79235	5.127235	6.46212	0.00302484	0.00211728	0.0305643	0.028892
chr1	50779912	50780012	477932	0	-	0.35	(0.33,0.36]	chr1	56816	348	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	4.83538	5.12709	5.4188	0.0679743	0.00513015	0.164413	0.0435186
chr19	47227757	47227857	7392358	0	-	0.64	(0.58,1]	chr19	768099	2	SS5_PROX	SS5_PROX:INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	2	143	2	3.73187	5.126925	6.52198	0.00186556	0.00101172	0.0269723	0.0143169
chr14	36303598	36303697	5961902	0	-	0.393939	(0.39,0.419]	chr14	584420	24	INTRON	INTRON	MBIP	ENSG00000151332.20	ENST00000416007.9:ENST00000318473.11:ENST00000359527.11:ENST00000604768.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	5.10551	5.12687	5.14823	0.0501234	0.0112089	0.147892	0.071709
chr11	70795843	70795943	5062240	0	-	0.54	(0.523,0.58]	chr11	492701	780	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	4.90222	5.12673	5.35124	0.0295772	0.0125132	0.116079	0.0765738
chr17	68575752	68575852	6960015	0	-	0.29	[0,0.29]	chr17	709975	175	INTRON	INTRON	FAM20A	ENSG00000108950.12	ENST00000592554.2:ENST00000590074.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.88286	5.126695	5.37053	0.041613	0.00378192	0.136301	0.0354402
chr11	70659127	70659227	5060866	0	-	0.5	(0.485,0.523]	chr11	492672	43	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	61	2	4.43249	5.12665	5.82081	0.0322299	0.0138807	0.12988	0.0804838
chr15	68181604	68181693	6141783	0	+	0.337079	(0.33,0.36]	chr15	604133	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	PIAS1	ENSG00000033800.14	ENST00000249636.11:ENST00000545237.1:ENST00000567417.1:ENST00000563996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	54	2	4.99985	5.126385	5.25292	0.0384256	0.0127452	0.131324	0.0773423
chr20	8741363	8741463	7432711	0	+	0.36	(0.33,0.36]	chr20	773838	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000378641.7:ENST00000338037.11:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000626966.2:ENST00000617005.4:ENST00000612075.4:ENST00000487210.5:ENST00000494924.2:ENST00000439627.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	4.99985	5.126385	5.25292	0.0384256	0.0127452	0.131324	0.0773423
chr10	46805716	46805815	4484740	0	+	0.555556	(0.523,0.58]	chr10	428921	34	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000688259.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	213	2	3.31139	5.126225	6.94106	0.00183008	0.00167722	0.0266451	0.0203806
chr2	11578831	11578931	720661	0	+	0.52	(0.485,0.523]	chr2	84131	4	SS5_PROX	SS5_PROX:INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000263834.9:ENST00000389825.7:ENST00000381483.6:ENST00000234142.9	protein_coding	protein_coding	protein_coding	protein_coding	1	116	2	4.17794	5.126185	6.07443	0.00899749	0.0014639	0.0637469	0.0185482
chr17	4289029	4289129	6841669	0	-	0.27	[0,0.29]	chr17	692441	4	SS5_PROX	SS5_PROX:INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1:ENST00000571953.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	5.04518	5.126155000000001	5.20713	0.0248721	0.00813784	0.10758	0.0588114
chr6	1870928	1871028	3081582	0	-	0.43	(0.419,0.45]	chr6	299482	1280	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	128	2	4.43095	5.126155000000001	5.82136	0.0210659	0.00105051	0.0996078	0.0146865
chr19	41327332	41327432	7381072	0	-	0.46	(0.45,0.485]	chr19	765964	243	INTRON	INTRON	TGFB1	ENSG00000105329.11	ENST00000598758.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	54	2	4.77571	5.126094999999999	5.47648	0.0719884	0.0039628	0.168159	0.0368027
chr10	92351896	92351994	4550033	0	+	0.44898	(0.419,0.45]	chr10	434234	8	UTR3	UTR3:EXON_MRNA	MARCHF5	ENSG00000198060.10	ENST00000358935.3	protein_coding	protein_coding	protein_coding	protein_coding	1	151	2	3.61678	5.125685	6.63459	0.0229694	3.11318e-4	0.102982	0.00624487
chr18	7619185	7619285	7005449	0	+	0.37	(0.36,0.39]	chr18	716101	509	INTRON	INTRON	PTPRM	ENSG00000173482.17	ENST00000332175.12:ENST00000580170.6	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.6317	5.125495000000001	5.61929	0.0950937	0.00359045	0.189021	0.0342681
chr7	75933911	75934010	3396794	0	+	0.343434	(0.33,0.36]	chr7	328054	106	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000449920.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	161	2	3.67136	5.125344999999999	6.57933	0.00441125	0.00206065	0.0430586	0.023562
chr2	239159941	239160040	1390296	0	-	0.363636	(0.36,0.39]	chr2	148698	28	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	58	2	4.64834	5.12532	5.6023	0.0272056	0.0258522	0.119337	0.109555
chr11	68491070	68491169	4883784	0	+	0.545455	(0.523,0.58]	chr11	470696	299	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	570	2	5.06577	5.12528	5.18479	4.72735e-4	1.69542e-5	0.0125708	7.46414e-4
chr12	124876188	124876288	5537481	0	-	0.39	(0.36,0.39]	chr12	546114	87	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000535005.5:ENST00000541661.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	190	2	4.67101	5.125245	5.57948	0.00393844	0.00342924	0.0375473	0.0367306
chr16	69020828	69020928	6480605	0	+	0.51	(0.485,0.523]	chr16	643666	463	INTRON	INTRON	TANGO6	ENSG00000103047.8	ENST00000261778.2:ENST00000562000.5:ENST00000568361.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	54	2	4.8987	5.125185	5.35167	0.0294163	0.0129327	0.116079	0.0778105
chr16	85401631	85401731	6517087	0	+	0.52	(0.485,0.523]	chr16	646391	423	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.8987	5.125185	5.35167	0.0294163	0.0129327	0.116079	0.0778105
chr9	133854788	133854888	4428946	0	-	0.52	(0.485,0.523]	chr9	423304	201	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.8987	5.125185	5.35167	0.0294163	0.0129327	0.116079	0.0778105
chr20	50532677	50532777	7493704	0	+	0.46	(0.45,0.485]	chr20	781416	217	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.95056	5.125145	5.29973	0.035042	0.0127826	0.12704	0.0773423
chr11	118240777	118240877	5135328	0	-	0.46	(0.45,0.485]	chr11	498661	4	SS3_PROX	SS3_PROX:INTRON	MPZL3	ENSG00000160588.10	ENST00000278949.9:ENST00000525386.5:ENST00000527472.1:ENST00000446386.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	4.67139	5.1249649999999995	5.57854	0.0230065	0.0223378	0.108193	0.102982
chr19	3527914	3528014	7191577	0	+	0.73	(0.58,1]	chr19	732248	1	SS5_PROX	SS5_PROX:INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	51	2	5.08534	5.124935000000001	5.16453	0.0249802	0.00549379	0.10758	0.0454065
chr7	215362	215462	3305808	0	+	0.71	(0.58,1]	chr7	320161	60	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	5.08534	5.124935000000001	5.16453	0.0249802	0.00549379	0.10758	0.0454065
chr7	1011440	1011540	3526337	0	-	0.62	(0.58,1]	chr7	340572	9	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	5.08534	5.124935000000001	5.16453	0.0249802	0.00549379	0.10758	0.0454065
chr7	5476094	5476194	3536778	0	-	0.64	(0.58,1]	chr7	341531	4	UTR3	UTR3:EXON_MRNA:INTRON	FBXL18	ENSG00000155034.20	ENST00000415009.5:ENST00000382368.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	5.08534	5.124935000000001	5.16453	0.0249802	0.00549379	0.10758	0.0454065
chr2	239159645	239159743	1390293	0	-	0.642857	(0.58,1]	chr2	148698	25	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	107	2	4.15724	5.1249	6.09256	0.00452436	0.00107173	0.0436138	0.0148869
chr18	62253154	62253254	7078097	0	+	0.4	(0.39,0.419]	chr18	721671	4	SS5_PROX	SS5_PROX:INTRON	RELCH	ENSG00000134444.15	ENST00000644646.2:ENST00000256858.10:ENST00000398130.6:ENST00000587725.5:ENST00000591227.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	0	56	2	4.63037	5.1245449999999995	5.61872	0.0963077	0.00361685	0.189169	0.0342681
chr21	42847542	42847641	7675447	0	-	0.636364	(0.58,1]	chr21	802287	39	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	2	161	2	4.47942	5.12438	5.76934	0.00849371	9.27151e-5	0.0617717	0.002587
chr20	44402991	44403084	7482944	0	+	0.580645	(0.58,1]	chr20	779642	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000682427.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	196	2	3.39623	5.1243549999999995	6.85248	9.12934e-4	9.03898e-4	0.0180377	0.0132686
chr10	73710723	73710822	4716813	0	-	0.424242	(0.419,0.45]	chr10	449734	53	INTRON	INTRON	BMS1P4:ENSG00000272140	ENSG00000271816.1:ENSG00000272140.2	ENST00000580790.1:ENST00000415917.2:ENST00000580623.1	lncRNA	lncRNA	lncRNA	lncRNA	1	156	2	3.96133	5.124225	6.28712	0.0131856	7.76382e-4	0.0785398	0.0118807
chr17	57463112	57463212	6761843	0	+	0.57	(0.523,0.58]	chr17	682137	180	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	53	2	4.84569	5.12397	5.40225	0.0610722	0.00404292	0.158506	0.0371291
chr20	8523831	8523931	7430506	0	+	0.54	(0.523,0.58]	chr20	773698	1518	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	53	2	4.84569	5.12397	5.40225	0.0610722	0.00404292	0.158506	0.0371291
chr6	24270453	24270553	3109447	0	-	0.4	(0.39,0.419]	chr6	301412	650	INTRON	INTRON	DCDC2	ENSG00000146038.12	ENST00000378454.8	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	4.30157	5.123295000000001	5.94502	0.0496288	0.0155393	0.160725	0.0849828
chr5	122057421	122057521	2520788	0	+	0.41	(0.39,0.419]	chr5	250297	289	INTRON	INTRON	SRFBP1	ENSG00000151304.6	ENST00000504881.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	56	2	4.79402	5.12313	5.45224	0.032783	0.0208208	0.122593	0.102713
chr15	56178060	56178160	6274831	0	-	0.32	(0.29,0.33]	chr15	618428	170	INTRON	INTRON	RFX7	ENSG00000181827.16	ENST00000674082.1:ENST00000559447.8:ENST00000673997.1:ENST00000673948.1:ENST00000560792.4	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.85285	5.123095	5.39334	0.0567079	0.00448059	0.154343	0.0398484
chr3	188265152	188265252	1652910	0	+	0.3	(0.29,0.33]	chr3	173754	246	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.85285	5.123095	5.39334	0.0567079	0.00448059	0.154343	0.0398484
chr12	94175169	94175269	5293538	0	+	0.37	(0.36,0.39]	chr12	515049	55	INTRON	INTRON	PLXNC1	ENSG00000136040.9	ENST00000258526.9:ENST00000546733.1:ENST00000551850.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	5.04893	5.12303	5.19713	0.0462258	0.0125348	0.143138	0.0765738
chr21	46548022	46548118	7634391	0	+	0.479167	(0.45,0.485]	chr21	798458	6	INTRON	INTRON	DIP2A	ENSG00000160305.18	ENST00000417564.3:ENST00000651436.1:ENST00000400274.5:ENST00000457905.7	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.00859	5.1229700000000005	5.23735	0.052901	0.00687715	0.14912	0.0526888
chr18	80177263	80177363	7183051	0	-	0.5	(0.485,0.523]	chr18	730359	163	INTRON	INTRON	PARD6G	ENSG00000178184.16	ENST00000353265.8	protein_coding	protein_coding	protein_coding	protein_coding	1	118	2	4.39455	5.122925	5.8513	0.0131886	8.03516e-4	0.0785398	0.012189
chr9	20357958	20358058	4283980	0	-	0.43	(0.419,0.45]	chr9	409473	27	INTRON	INTRON	MLLT3	ENSG00000171843.17	ENST00000380338.9:ENST00000629733.3:ENST00000630269.2:ENST00000469261.5:ENST00000488705.1:ENST00000380321.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	124	2	3.87872	5.122925	6.36713	0.00893106	0.00421639	0.0637469	0.0380856
chr1	9294144	9294240	19595	0	+	0.458333	(0.45,0.485]	chr1	2201	7	INTRON	INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.06138	5.12288	5.18438	0.0492008	0.00773818	0.146142	0.0568726
chr11	70885906	70886006	5063146	0	-	0.47	(0.45,0.485]	chr11	492728	129	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000645599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	5.06138	5.12288	5.18438	0.0492008	0.00773818	0.146142	0.0568726
chr19	8462689	8462765	7201157	0	+	0.460526	(0.45,0.485]	chr19	734342	1	SS5_PROX	SS5_PROX:INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000597813.5:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5:ENST00000593293.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	53	2	5.06138	5.12288	5.18438	0.0492008	0.00773818	0.146142	0.0568726
chr17	42131406	42131506	6902750	0	-	0.42	(0.419,0.45]	chr17	702051	4	SS5_PROX	SS5_PROX:INTRON	RAB5C	ENSG00000108774.15	ENST00000393860.7:ENST00000346213.9:ENST00000547517.5:ENST00000552162.5:ENST00000546881.1:ENST00000550504.5:ENST00000550406.1:ENST00000550013.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	5.04043	5.122755	5.20508	0.0625897	0.00979452	0.160305	0.0664239
chr5	176913982	176914082	2816364	0	-	0.42	(0.419,0.45]	chr5	275832	22	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000510698.2:ENST00000503273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	54	2	5.04043	5.122755	5.20508	0.0625897	0.00979452	0.160305	0.0664239
chr7	137990162	137990262	3720604	0	-	0.45	(0.419,0.45]	chr7	357307	564	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.04043	5.122755	5.20508	0.0625897	0.00979452	0.160305	0.0664239
chr8	116872511	116872610	4046531	0	-	0.323232	(0.29,0.33]	chr8	385947	54	INTRON	INTRON	RAD21	ENSG00000164754.16	ENST00000297338.7:ENST00000517485.6:ENST00000519837.6:ENST00000522699.2:ENST00000687358.1:ENST00000520992.6:ENST00000517749.2:ENST00000685972.1:ENST00000687902.1:ENST00000523547.2:ENST00000686622.1:ENST00000688033.1:ENST00000689504.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	53	2	5.02042	5.12245	5.22448	0.0331252	0.0103902	0.123313	0.0682598
chr16	72996109	72996209	6627369	0	-	0.56	(0.523,0.58]	chr16	663547	224	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2:ENST00000397992.5:ENST00000268489.10	protein_coding	protein_coding	protein_coding	protein_coding	1	117	2	3.84801	5.12241	6.39681	0.00509616	0.00343547	0.0467496	0.0333396
chr11	71069158	71069258	5064985	0	-	0.5	(0.485,0.523]	chr11	492754	122	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000618363.4:ENST00000458632.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	53	2	4.84611	5.122400000000001	5.39869	0.0608067	0.00421243	0.158506	0.0380601
chr11	68352402	68352500	4882482	0	+	0.418367	(0.39,0.419]	chr11	470548	38	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	5.04836	5.122075	5.19579	0.0469937	0.0126072	0.143232	0.0768036
chr9	100490787	100490887	4200647	0	+	0.41	(0.39,0.419]	chr9	399058	167	INTRON	INTRON	MSANTD3-TMEFF1:TMEFF1	ENSG00000251349.3:ENSG00000241697.5	ENST00000502978.1:ENST00000374879.5	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.04836	5.122075	5.19579	0.0469937	0.0126072	0.143232	0.0768036
chr14	104870655	104870755	5925918	0	+	0.62	(0.58,1]	chr14	579942	17	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	1	119	2	4.84837	5.1219149999999996	5.39546	0.0168207	1.2454e-4	0.0884836	0.00322977
chr8	140829971	140830071	4091413	0	-	0.44	(0.419,0.45]	chr8	388848	1	SS5_PROX	SS5_PROX:INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524202.5:ENST00000524357.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	4.98767	5.12191	5.25615	0.0669167	0.00879729	0.16272	0.0615125
chr9	96473979	96474078	4193670	0	+	0.424242	(0.419,0.45]	chr9	398384	25	INTRON	INTRON	HABP4	ENSG00000130956.14	ENST00000375249.5:ENST00000375251.7	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.98767	5.12191	5.25615	0.0669167	0.00879729	0.16272	0.0615125
chr18	23408115	23408215	7131398	0	-	0.47	(0.45,0.485]	chr18	725642	81	INTRON	INTRON	TMEM241	ENSG00000134490.14	ENST00000581444.5:ENST00000383233.8:ENST00000473688.5:ENST00000477053.5:ENST00000460322.5:ENST00000542162.5:ENST00000578520.5:ENST00000482411.5:ENST00000497608.5:ENST00000577531.5:ENST00000582336.5:ENST00000580025.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	4.81772	5.121795	5.42587	0.0290571	0.0167663	0.116079	0.0917029
chr18	28139584	28139684	7140270	0	-	0.46	(0.45,0.485]	chr18	726157	420	INTRON	INTRON	CDH2	ENSG00000170558.10	ENST00000269141.8:ENST00000676445.1:ENST00000675708.1:ENST00000430882.6:ENST00000413878.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	4.81772	5.121795	5.42587	0.0290571	0.0167663	0.116079	0.0917029
chr3	60527909	60528009	1798886	0	-	0.42	(0.419,0.45]	chr3	186807	4472	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.09133	5.121735	5.15214	0.0586308	0.0109324	0.155565	0.0706366
chr1	8542316	8542416	392969	0	-	0.5	(0.485,0.523]	chr1	45029	6	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000469251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	53	2	5.02573	5.12171	5.21769	0.0359739	0.00985879	0.127853	0.0664239
chr13	113051906	113052006	5656154	0	+	0.52	(0.485,0.523]	chr13	555180	47	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	5.02573	5.12171	5.21769	0.0359739	0.00985879	0.127853	0.0664239
chr15	44543802	44543902	6095305	0	+	0.49	(0.485,0.523]	chr15	599993	60	INTRON	INTRON	EIF3J	ENSG00000104131.13	ENST00000424492.7:ENST00000261868.10:ENST00000535391.5	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.02573	5.12171	5.21769	0.0359739	0.00985879	0.127853	0.0664239
chr6	18406392	18406492	2862366	0	+	0.5	(0.485,0.523]	chr6	279589	44	INTRON	INTRON	RNF144B	ENSG00000137393.10	ENST00000259939.4	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.02573	5.12171	5.21769	0.0359739	0.00985879	0.127853	0.0664239
chr6	25293203	25293303	2882307	0	+	0.5	(0.485,0.523]	chr6	280352	79	INTRON	INTRON	CARMIL1	ENSG00000079691.18	ENST00000461945.1:ENST00000329474.7	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.02573	5.12171	5.21769	0.0359739	0.00985879	0.127853	0.0664239
chr5	180573098	180573195	2606404	0	+	0.453608	(0.45,0.485]	chr5	259158	13	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.9538	5.12113	5.28846	0.0569772	0.00612862	0.154343	0.0489549
chr2	3286818	3286917	1080975	0	-	0.676768	(0.58,1]	chr2	117633	41	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	52	2	4.89007	5.121105	5.35214	0.0181452	0.00872525	0.0921579	0.0612699
chr12	422014	422113	5148405	0	+	0.525253	(0.523,0.58]	chr12	500517	30	INTRON	INTRON	CCDC77	ENSG00000120647.10	ENST00000540180.5:ENST00000422000.5:ENST00000543504.5:ENST00000540344.5:ENST00000412006.6:ENST00000239830.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	56	2	4.50593	5.12101	5.73609	0.094303	0.0017613	0.188571	0.0211077
chr19	33204061	33204157	7240913	0	+	0.572917	(0.523,0.58]	chr19	741411	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	LRP3	ENSG00000130881.14	ENST00000592484.5:ENST00000253193.9:ENST00000590275.1:ENST00000590278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	56	2	4.50593	5.12101	5.73609	0.094303	0.0017613	0.188571	0.0211077
chrX	1417275	1417373	7965652	0	-	0.479592	(0.45,0.485]	chrX	834254	41	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.1123	5.12084	5.12938	0.0458344	0.00873194	0.142336	0.0612699
chr17	77485625	77485725	6805238	0	+	0.57	(0.523,0.58]	chr17	686821	16	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	140	2	3.74217	5.120705	6.49924	0.0146653	2.16101e-4	0.0826843	0.00477041
chr3	134528449	134528548	1573441	0	+	0.373737	(0.36,0.39]	chr3	166854	208	INTRON	INTRON	CEP63	ENSG00000182923.20	ENST00000683997.1:ENST00000683596.1:ENST00000684574.1:ENST00000650279.2:ENST00000683940.1:ENST00000332047.10:ENST00000684217.1:ENST00000684256.1:ENST00000354446.7:ENST00000683556.1:ENST00000684588.1:ENST00000682593.1:ENST00000682858.1:ENST00000683949.1:ENST00000684170.1:ENST00000682458.1:ENST00000682190.1:ENST00000682042.1:ENST00000683118.1:ENST00000511574.6:ENST00000682822.1:ENST00000620544.5:ENST00000383229.8:ENST00000675561.1:ENST00000683245.1:ENST00000513295.2:ENST00000508778.2:ENST00000684481.1:ENST00000514678.2:ENST00000682717.1:ENST00000683190.1:ENST00000682689.1:ENST00000684677.1:ENST00000682316.1:ENST00000683177.1:ENST00000683861.1:ENST00000512894.6:ENST00000682013.1:ENST00000682007.1:ENST00000682402.1:ENST00000682954.1:ENST00000684777.1:ENST00000682670.1:ENST00000682937.1:ENST00000504013.6:ENST00000682072.1:ENST00000683931.1:ENST00000683732.1:ENST00000684060.1:ENST00000513612.7:ENST00000606977.5:ENST00000683608.1:ENST00000682685.1:ENST00000684492.1:ENST00000682800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	59	2	4.56926	5.12027	5.67128	0.031369	0.023302	0.127822	0.103669
chr20	16458740	16458840	7530561	0	-	0.42	(0.419,0.45]	chr20	785851	284	INTRON	INTRON	KIF16B	ENSG00000089177.19	ENST00000354981.7:ENST00000636835.1:ENST00000408042.5	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.91849	5.12022	5.32195	0.0431627	0.0174488	0.138403	0.0928044
chr9	34399411	34399508	4296601	0	-	0.43299	(0.419,0.45]	chr9	410635	12	UTR3	UTR3:EXON_MRNA:INTRON	FAM219A	ENSG00000164970.15	ENST00000651358.1:ENST00000379080.5:ENST00000379081.5:ENST00000379084.5:ENST00000379087.5:ENST00000379089.5:ENST00000445726.5:ENST00000297620.8	protein_coding	protein_coding	protein_coding	protein_coding	2	166	2	3.50938	5.119895	6.73041	0.00486702	0.00355544	0.0456282	0.0342681
chr17	7108888	7108988	6847722	0	-	0.69	(0.58,1]	chr17	693421	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	499	2	3.75321	5.119425	6.48564	0.00197421	3.93113e-7	0.0278911	5.6671e-5
chr2	239079595	239079695	1389466	0	-	0.52	(0.485,0.523]	chr2	148587	103	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000494800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	56	2	4.50634	5.119425	5.73251	0.0939553	0.00184599	0.188571	0.0217471
chr16	30992522	30992621	6579806	0	-	0.59596	(0.58,1]	chr16	657721	34	UTR3	UTR3:EXON_MRNA	STX1B	ENSG00000099365.11	ENST00000215095.11	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.82753	5.119235	5.41094	0.0427798	0.00240622	0.13762	0.0261006
chr19	19074007	19074107	7225609	0	+	0.42	(0.419,0.45]	chr19	739606	95	INTRON	INTRON	SLC25A42	ENSG00000181035.14	ENST00000318596.8:ENST00000597661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	4.9329	5.11919	5.30548	0.0716557	0.00792071	0.168159	0.057762
chr15	68820397	68820497	6312159	0	-	0.69	(0.58,1]	chr15	622254	3	SS5_PROX	SS5_PROX:INTRON	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6:ENST00000560303.1:ENST00000495420.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	172	2	3.30999	5.119085	6.92818	0.00180937	7.72338e-4	0.02155	0.0164417
chr12	109556344	109556442	5494674	0	-	0.540816	(0.523,0.58]	chr12	540589	28	UTR3	UTR3:EXON_MRNA	MMAB	ENSG00000139428.12	ENST00000545712.7	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.68785	5.118985	5.55012	0.0217068	0.0194172	0.100615	0.0994526
chr2	87542209	87542309	848072	0	+	0.39	(0.36,0.39]	chr2	95749	208	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000642451.1:ENST00000644478.1:ENST00000409139.6:ENST00000644125.1:ENST00000643743.1:ENST00000643276.1:ENST00000409898.2:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000646636.1:ENST00000629257.1:ENST00000409054.2	lncRNA	lncRNA	lncRNA	lncRNA	0	55	2	4.69932	5.1189350000000005	5.53855	0.0877431	0.00432809	0.183437	0.0389438
chr18	69823565	69823665	7087421	0	+	0.43	(0.419,0.45]	chr18	722173	423	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	5.09718	5.1188400000000005	5.1405	0.0550015	0.012235	0.153337	0.0757339
chr5	59656278	59656378	2670701	0	-	0.42	(0.419,0.45]	chr5	264360	699	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000507116.5:ENST00000502484.6:ENST00000309641.10:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	5.09718	5.1188400000000005	5.1405	0.0550015	0.012235	0.153337	0.0757339
chr10	31458237	31458337	4473145	0	+	0.37	(0.36,0.39]	chr10	427907	682	INTRON	INTRON	ZEB1	ENSG00000148516.23	ENST00000488625.6:ENST00000560196.5:ENST00000542879.5:ENST00000561304.5:ENST00000320985.14:ENST00000560721.6:ENST00000559858.5:ENST00000558440.5:ENST00000437844.6:ENST00000424869.6:ENST00000542815.7:ENST00000558863.5:ENST00000561212.5:ENST00000558655.5:ENST00000561061.5:ENST00000559496.5:ENST00000446923.7:ENST00000557827.5:ENST00000606671.5:ENST00000606161.1:ENST00000493835.5:ENST00000560909.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	125	2	3.68627	5.118755	6.55124	0.00632798	0.0055566	0.0501889	0.049265
chr10	50206497	50206597	4686738	0	-	0.36	(0.33,0.36]	chr10	446922	4	SS3_PROX	SS3_PROX:INTRON	ASAH2	ENSG00000188611.17	ENST00000395526.9:ENST00000682911.1:ENST00000443575.5:ENST00000329428.10	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.77355	5.11855	5.46355	0.0735809	0.00462971	0.17026	0.0408278
chr15	51091712	51091811	6257717	0	-	0.343434	(0.33,0.36]	chr15	616586	329	INTRON	INTRON	TNFAIP8L3	ENSG00000183578.8	ENST00000327536.5:ENST00000637513.2:ENST00000649177.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.77355	5.11855	5.46355	0.0735809	0.00462971	0.17026	0.0408278
chr10	132766346	132766445	4619136	0	+	0.515152	(0.485,0.523]	chr10	441207	1	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000445580.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.581	5.118505000000001	5.65601	0.085711	0.00224147	0.181766	0.024843
chr16	87745312	87745410	6656536	0	-	0.704082	(0.58,1]	chr16	665900	24	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	5.02314	5.118455	5.21377	0.0230012	0.00638322	0.102982	0.0501889
chr2	3288714	3288814	1080994	0	-	0.6	(0.58,1]	chr2	117633	60	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	5.02314	5.118455	5.21377	0.0230012	0.00638322	0.102982	0.0501889
chr2	86077758	86077858	1212429	0	-	0.6	(0.58,1]	chr2	130572	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	POLR1A	ENSG00000068654.17	ENST00000263857.11:ENST00000409681.1:ENST00000683266.1:ENST00000684556.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	5.02314	5.118455	5.21377	0.0230012	0.00638322	0.102982	0.0501889
chr4	2547555	2547655	1998142	0	+	0.37	(0.36,0.39]	chr4	203745	100	INTRON	INTRON	RNF4:FAM193A	ENSG00000063978.16:ENSG00000125386.16	ENST00000508235.1:ENST00000637812.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	150	2	3.89235	5.11841	6.34447	0.0135325	5.89187e-4	0.0793001	0.00981079
chr16	85234065	85234165	6515409	0	+	0.54	(0.523,0.58]	chr16	646377	63	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	55	2	4.7629	5.11836	5.47382	0.0244797	0.0167014	0.106683	0.0917029
chrX	48918133	48918232	8040672	0	-	0.545455	(0.523,0.58]	chrX	838764	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PIM2	ENSG00000102096.9	ENST00000376509.4	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.7629	5.11836	5.47382	0.0244797	0.0167014	0.106683	0.0917029
chr19	5815305	5815405	7195539	0	+	0.45	(0.419,0.45]	chr19	733105	95	INTRON	INTRON	NRTN	ENSG00000171119.3	ENST00000303212.3	protein_coding	protein_coding	protein_coding	protein_coding	1	123	2	4.1167299999999996	5.118315	6.1199	0.0132894	0.00235149	0.0787251	0.0258525
chr13	50641692	50641792	5599044	0	+	0.4	(0.39,0.419]	chr13	551695	102	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1	lncRNA	lncRNA	lncRNA	lncRNA	1	150	2	3.86868	5.118065	6.36745	0.0142603	5.58995e-4	0.0818174	0.00944382
chr8	118024331	118024431	4048866	0	-	0.4	(0.39,0.419]	chr8	386022	72	INTRON	INTRON	EXT1	ENSG00000182197.13	ENST00000378204.7:ENST00000437196.1:ENST00000436216.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	202	2	3.70435	5.117900000000001	6.53145	0.00589503	0.00112484	0.0506158	0.0153963
chr12	113837285	113837385	5509241	0	-	0.53	(0.523,0.58]	chr12	542458	136	INTRON	INTRON	RBM19	ENSG00000122965.11	ENST00000545145.6:ENST00000392561.7:ENST00000261741.10:ENST00000552384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	190	2	3.75859	5.1178799999999995	6.47717	0.00439843	6.91189e-4	0.0429852	0.0109563
chr7	92672234	92672334	3637321	0	-	0.5	(0.485,0.523]	chr7	350310	3	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000473078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	118	2	4.4145200000000004	5.117665000000001	5.82081	0.0138807	7.5951e-4	0.0804838	0.011724
chr6	34909883	34909983	2900718	0	+	0.51	(0.485,0.523]	chr6	284492	199	INTRON	INTRON	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1:ENST00000650178.1	protein_coding	protein_coding	protein_coding	protein_coding	1	116	2	3.92296	5.11755	6.31214	0.00589975	0.00288574	0.0506158	0.0297057
chr16	89303815	89303914	6659847	0	-	0.545455	(0.523,0.58]	chr16	666658	18	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	1170	2	4.70015	5.117405	5.53466	6.48699e-4	7.89673e-7	0.0149631	8.99135e-5
chr19	16380815	16380914	7343739	0	-	0.484848	(0.45,0.485]	chr19	760674	32	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	4.89685	5.11733	5.33781	0.0614781	0.0054758	0.158506	0.0454065
chr19	2337114	2337174	7189493	0	+	0.633333	(0.58,1]	chr19	731786	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1:ENST00000593243.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	142	2	3.75213	5.117240000000001	6.48235	0.00202884	9.51475e-4	0.0283135	0.0136675
chr16	87740823	87740893	6656489	0	-	0.371429	(0.36,0.39]	chr16	665895	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	4.82572	5.117005	5.40829	0.0751666	0.00581205	0.172839	0.0472624
chr19	50035374	50035473	7284237	0	+	0.40404	(0.39,0.419]	chr19	749227	39	INTRON	INTRON	ZNF473	ENSG00000142528.16	ENST00000598809.5:ENST00000595661.5:ENST00000391821.6:ENST00000270617.8:ENST00000445728.7:ENST00000601364.5:ENST00000594968.1:ENST00000599155.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	4.86193	5.116825	5.37172	0.0367885	0.0182739	0.129052	0.0958352
chr15	83051955	83052054	6342512	0	-	0.50505	(0.485,0.523]	chr15	625236	14	INTRON	INTRON	BTBD1	ENSG00000064726.10	ENST00000261721.9:ENST00000379403.2:ENST00000559652.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	4.75939	5.11682	5.47425	0.0243396	0.0172254	0.106588	0.0923809
chr11	70813167	70813267	5062415	0	-	0.56	(0.523,0.58]	chr11	492713	56	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	115	2	3.98894	5.11668	6.24442	0.00670944	0.00237791	0.0541591	0.026
chr6	87178554	87178654	2950277	0	+	0.39	(0.36,0.39]	chr6	290365	83	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	4.98942	5.116295	5.24317	0.0433841	0.0141427	0.138813	0.0833845
chr18	76417966	76418066	7179299	0	-	0.4	(0.39,0.419]	chr18	730080	373	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.82439	5.116055	5.40772	0.0762206	0.00585126	0.174484	0.0474117
chr4	38677896	38677996	2030685	0	+	0.41	(0.39,0.419]	chr4	207280	131	INTRON	INTRON	KLF3	ENSG00000109787.13	ENST00000514033.1:ENST00000261438.10:ENST00000482150.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	148	2	3.44204	5.11591	6.78978	0.0284392	1.77584e-4	0.114979	0.00415615
chr6	348951	349049	2824324	0	+	0.653061	(0.58,1]	chr6	277235	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DUSP22	ENSG00000112679.15	ENST00000344450.9:ENST00000603453.5:ENST00000605315.5:ENST00000603795.5:ENST00000605035.5:ENST00000419235.7:ENST00000603726.5:ENST00000604971.5:ENST00000604988.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	291	2	2.39362	5.115735	7.83785	0.0254541	1.0051e-6	0.108714	1.05275e-4
chr5	138511200	138511291	2769571	0	-	0.340659	(0.33,0.36]	chr5	271791	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ETF1	ENSG00000120705.13	ENST00000360541.10:ENST00000499810.6:ENST00000503014.5:ENST00000506345.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	55	2	4.64131	5.11567	5.59003	0.0867669	0.00344516	0.182221	0.0333853
chr18	69462325	69462425	7083791	0	+	0.4	(0.39,0.419]	chr18	722102	607	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	1	121	2	4.03173	5.11561	6.19949	0.0103045	0.00274594	0.0684871	0.028553
chr17	61823746	61823845	6941394	0	-	0.353535	(0.33,0.36]	chr17	707697	146	INTRON	INTRON	BRIP1	ENSG00000136492.10	ENST00000259008.7:ENST00000682755.1:ENST00000682453.1:ENST00000683039.1:ENST00000682989.1:ENST00000682589.1:ENST00000683235.1:ENST00000682477.1:ENST00000684584.1:ENST00000577598.5:ENST00000682066.1:ENST00000584322.2:ENST00000683381.1:ENST00000579028.2:ENST00000682611.1:ENST00000683692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	53	2	5.0592	5.11536	5.17152	0.0504445	0.00887848	0.148216	0.0618231
chr18	76908873	76908973	7096267	0	+	0.4	(0.39,0.419]	chr18	722658	3	SS5_PROX	SS5_PROX:INTRON	ZNF236	ENSG00000130856.17	ENST00000320610.14:ENST00000543926.6:ENST00000253159.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	4.98886	5.11534	5.24182	0.0441194	0.0142222	0.140174	0.0833845
chr6	158562430	158562530	3063919	0	+	0.38	(0.36,0.39]	chr6	297687	18	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	4	561	2	4.39541	5.115265	5.83512	0.00170525	1.73062e-5	0.025653	7.59673e-4
chr1	153770020	153770097	247221	0	+	0.545455	(0.523,0.58]	chr1	28363	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	INTS3	ENSG00000143624.14	ENST00000318967.7:ENST00000435409.6:ENST00000481797.5:ENST00000512605.4:ENST00000476843.5:ENST00000503133.5:ENST00000368670.5:ENST00000368669.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	53	2	4.96714	5.11523	5.26332	0.0337698	0.0108948	0.124319	0.0706366
chr3	127668040	127668140	1560354	0	+	0.53	(0.523,0.58]	chr3	165190	2	SS3_PROX	SS3_PROX:INTRON	PODXL2	ENSG00000114631.11	ENST00000342480.7	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.65157	5.115185	5.5788	0.0787008	0.00262418	0.175203	0.0278348
chr7	23414887	23414984	3552650	0	-	0.56701	(0.523,0.58]	chr7	343216	18	EXON_MRNA	EXON_MRNA:INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	185	2	3.5192	5.11518	6.71116	0.00284169	0.00138005	0.033773	0.0178384
chr10	79111821	79111921	4532473	0	+	0.44	(0.419,0.45]	chr10	432420	422	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.78575	5.11511	5.44447	0.0364384	0.0224633	0.128173	0.108193
chr17	29083626	29083725	6875936	0	-	0.444444	(0.419,0.45]	chr17	697789	8	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000529578.5:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000546105.5:ENST00000527312.5:ENST00000531438.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	56	2	4.78575	5.11511	5.44447	0.0364384	0.0224633	0.128173	0.108193
chr10	61952804	61952904	4491089	0	+	0.41	(0.39,0.419]	chr10	429664	120	INTRON	INTRON	ARID5B	ENSG00000150347.17	ENST00000644638.1:ENST00000681100.1:ENST00000279873.12	protein_coding	protein_coding	protein_coding	protein_coding	1	122	2	3.8551	5.11505	6.375	0.00769302	0.00424346	0.0584869	0.0383199
chr10	133348291	133348390	4783417	0	-	0.686869	(0.58,1]	chr10	457516	21	INTRON	INTRON	ENSG00000226699	ENSG00000226699.1	ENST00000452591.1	lncRNA	lncRNA	lncRNA	lncRNA	0	59	2	4.3962	5.114975	5.83375	0.0250928	0.00751249	0.114418	0.0576451
chrX	24206425	24206525	7854892	0	+	0.6	(0.58,1]	chrX	823856	263	INTRON	INTRON	ZFX	ENSG00000005889.16	ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000379177.5:ENST00000459724.1:ENST00000338565.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	4.3962	5.114975	5.83375	0.0250928	0.00751249	0.114418	0.0576451
chr6	20424424	20424524	2863226	0	+	0.42	(0.419,0.45]	chr6	279635	202	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	2	211	2	2.78861	5.1149249999999995	7.44124	0.0432906	3.25371e-5	0.138758	0.00119625
chr16	53081866	53081966	6454359	0	+	0.33	(0.29,0.33]	chr16	640106	264	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000561869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	155	2	3.57872	5.11459	6.65046	0.00278312	0.00230719	0.0334064	0.0255029
chr19	6691326	6691426	7322655	0	-	0.49	(0.485,0.523]	chr19	756435	2	INTRON	INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000695653.1:ENST00000695654.1:ENST00000695692.1:ENST00000695652.1:ENST00000695655.1:ENST00000598805.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	53	2	4.78426	5.114575	5.44489	0.0660335	0.00377098	0.162385	0.0353672
chr12	26513655	26513755	5398360	0	-	0.41	(0.39,0.419]	chr12	528527	180	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	1	121	2	4.10127	5.11451	6.12775	0.0115883	0.00230482	0.0731017	0.0254829
chr11	47806650	47806731	5037737	0	-	0.296296	(0.29,0.33]	chr11	487899	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.95831	5.114425	5.27054	0.0308815	0.0118616	0.119556	0.0746945
chr2	77535171	77535271	1203382	0	-	0.33	(0.29,0.33]	chr2	130025	129	INTRON	INTRON	LRRTM4	ENSG00000176204.14	ENST00000456154.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.95831	5.114425	5.27054	0.0308815	0.0118616	0.119556	0.0746945
chr7	135424045	135424144	3718065	0	-	0.323232	(0.29,0.33]	chr7	357192	13	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000414802.5:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	4.95831	5.114425	5.27054	0.0308815	0.0118616	0.119556	0.0746945
chr19	45622137	45622231	7388916	0	-	0.478723	(0.45,0.485]	chr19	767274	1	INTRON	INTRON	EML2	ENSG00000125746.18	ENST00000589876.5:ENST00000587152.6:ENST00000245925.8:ENST00000586195.5:ENST00000588308.5:ENST00000536630.5:ENST00000590819.5:ENST00000399594.7:ENST00000590575.5:ENST00000588272.1:ENST00000588000.5:ENST00000588610.5:ENST00000588496.5:ENST00000586902.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	4.88567	5.11434	5.34301	0.0328801	0.0146126	0.122593	0.0837727
chr2	54481281	54481380	798523	0	+	0.50505	(0.485,0.523]	chr2	90783	236	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7	protein_coding	protein_coding	protein_coding	protein_coding	2	155	2	3.51668	5.11414	6.7116	0.00281636	0.00264036	0.0336649	0.0279436
chr1	7498700	7498800	15597	0	+	0.5	(0.485,0.523]	chr1	1895	304	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.60518	5.11409	5.623	0.0233371	0.0192139	0.110098	0.095424900000000007
chr18	74498024	74498091	7088427	0	+	0.447761	(0.419,0.45]	chr18	722267	1	SS5_PROX	SS5_PROX:INTRON	CNDP2	ENSG00000133313.15	ENST00000581272.5:ENST00000580672.5:ENST00000579847.5:ENST00000583399.5:ENST00000583203.5:ENST00000582260.5:ENST00000581513.5:ENST00000324262.9:ENST00000577600.5:ENST00000579583.5:ENST00000584613.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	5.04004	5.11404	5.18804	0.051668	0.0137308	0.148503	0.0814223
chr22	37512080	37512160	7808327	0	-	0.525	(0.523,0.58]	chr22	818438	3	UTR5	UTR5:EXON_MRNA:INTRON	CARD10	ENSG00000100065.15	ENST00000403299.5:ENST00000251973.10:ENST00000437756.5:ENST00000494166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	124	2	3.51663	5.113894999999999	6.71116	0.00782908	0.00284169	0.0574276	0.033773
chr10	75782261	75782360	4523988	0	+	0.424242	(0.419,0.45]	chr10	432277	387	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	165	2	3.6674	5.11379	6.56018	0.00648928	0.00238608	0.0532359	0.0260605
chr10	131918886	131918986	4616205	0	+	0.56	(0.523,0.58]	chr10	441069	59	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	4.83424	5.113755	5.39327	0.0277354	0.0144272	0.112851	0.0833845
chr4	856689	856788	2178151	0	-	0.535354	(0.523,0.58]	chr4	220550	30	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5:ENST00000511980.5:ENST00000510799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	54	2	4.83424	5.113755	5.39327	0.0277354	0.0144272	0.112851	0.0833845
chr10	79174417	79174517	4533101	0	+	0.49	(0.485,0.523]	chr10	432438	119	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.96361	5.1136800000000004	5.26375	0.0335928	0.0112713	0.124319	0.071709
chr17	44041055	44041155	6910327	0	-	0.52	(0.485,0.523]	chr17	703395	4	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.96361	5.1136800000000004	5.26375	0.0335928	0.0112713	0.124319	0.071709
chr17	4840033	4840133	6671953	0	+	0.36	(0.33,0.36]	chr17	668609	60	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	53	2	4.95163	5.1136	5.27557	0.0583482	0.00707628	0.155373	0.0540197
chr5	1105197	1105296	2608903	0	-	0.656566	(0.58,1]	chr5	259667	106	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.49116	5.11359	5.73602	0.0207449	0.00904546	0.102713	0.0637469
chr5	175923862	175923962	2814524	0	-	0.35	(0.33,0.36]	chr5	275558	53	INTRON	INTRON	THOC3	ENSG00000051596.10	ENST00000432305.6	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.11012	5.1133299999999995	5.11654	0.04702	0.00998589	0.143232	0.0667545
chr6	132463892	132463992	3263012	0	-	0.35	(0.33,0.36]	chr6	315806	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	STX7	ENSG00000079950.14	ENST00000367941.7:ENST00000367937.4	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.57958	5.113300000000001	5.64702	0.0288057	0.0212683	0.123764	0.0996805
chr14	68900163	68900262	5999341	0	-	0.424242	(0.419,0.45]	chr14	588704	61	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	150	2	3.67133	5.11329	6.55525	0.021076	3.84925e-4	0.0996078	0.00726694
chr1	9298390	9298490	19638	0	+	0.33	(0.29,0.33]	chr1	2205	34	INTRON	INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11:ENST00000450402.1	protein_coding	protein_coding	protein_coding	protein_coding	1	118	2	4.39747	5.11257	5.82767	0.0124924	8.30133e-4	0.0761905	0.012496
chr6	1681225	1681325	3079682	0	-	0.57	(0.523,0.58]	chr6	299464	9	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000533279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	116	2	4.34417	5.112445	5.88072	0.0126258	9.01636e-4	0.0761905	0.0132389
chr15	79377273	79377373	6161116	0	+	0.51	(0.485,0.523]	chr15	606406	546	INTRON	INTRON	TMED3	ENSG00000166557.14	ENST00000424155.6:ENST00000536821.5	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.83072	5.112205	5.39369	0.0275819	0.0148956	0.112782	0.0847741
chr2	10786491	10786587	1087172	0	-	0.520833	(0.485,0.523]	chr2	118477	11	INTRON	INTRON	PDIA6	ENSG00000143870.13	ENST00000272227.8:ENST00000381611.8:ENST00000404371.6:ENST00000617249.4:ENST00000540494.5:ENST00000404824.2	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.83072	5.112205	5.39369	0.0275819	0.0148956	0.112782	0.0847741
chr11	70584629	70584729	5060119	0	-	0.56	(0.523,0.58]	chr11	492663	813	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	115	2	3.93421	5.11192	6.28963	0.00618741	0.00274644	0.0519442	0.028553
chr22	42949427	42949526	7823625	0	-	0.484848	(0.45,0.485]	chr22	820622	25	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000407585.5:ENST00000402229.5:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5:ENST00000453079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	120	2	4.4113	5.1117	5.8121	0.0158765	8.48909e-4	0.0859576	0.0126615
chr6	7210948	7211048	2839116	0	+	0.47	(0.45,0.485]	chr6	277960	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	53	2	4.83755	5.11154	5.38553	0.06646	0.00490471	0.162385	0.0422077
chr8	31136769	31136868	3791519	0	+	0.454545	(0.45,0.485]	chr8	365196	39	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	53	2	4.83755	5.11154	5.38553	0.06646	0.00490471	0.162385	0.0422077
chr2	232888107	232888207	1383712	0	-	0.5	(0.485,0.523]	chr2	147927	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000424488.5:ENST00000461944.1:ENST00000416114.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	121	2	4.56508	5.111495	5.65791	0.0181582	4.94211e-4	0.0921579	0.00865935
chr6	169660462	169660562	3304476	0	-	0.6	(0.58,1]	chr6	319897	4	SS5_PROX	SS5_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2:ENST00000467418.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	106	2	4.18386	5.111395	6.03893	0.00503456	9.90719e-4	0.0464858	0.0141138
chr17	15466060	15466160	6860095	0	-	0.66	(0.58,1]	chr17	695067	126	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	53	2	4.74346	5.110925	5.47839	0.0145198	0.0121457	0.0823104	0.0754623
chr22	37493302	37493396	7808113	0	-	0.648936	(0.58,1]	chr22	818359	1	INTRON	INTRON	CARD10	ENSG00000100065.15	ENST00000403299.5:ENST00000251973.10:ENST00000488141.5:ENST00000467812.1:ENST00000406271.7:ENST00000437756.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	53	2	4.74346	5.110925	5.47839	0.0145198	0.0121457	0.0823104	0.0754623
chr18	69613190	69613290	7085307	0	+	0.42	(0.419,0.45]	chr18	722127	133	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	1	127	2	4.43095	5.110915	5.79088	0.022052	0.00105051	0.101502	0.0146865
chr6	158628207	158628307	3064589	0	+	0.5	(0.485,0.523]	chr6	297759	4	SS3_PROX	SS3_PROX:INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	5	666	2	5.06996	5.11087	5.15178	3.9161e-4	1.19217e-5	0.0113511	5.82737e-4
chr16	28728342	28728441	6431220	0	+	0.454545	(0.45,0.485]	chr16	636440	7	INTRON	INTRON	EIF3C	ENSG00000184110.15	ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5:ENST00000565932.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	53	2	5.01267	5.110865	5.20906	0.0399616	0.011221	0.133954	0.071709
chr20	26011146	26011243	7452335	0	+	0.484536	(0.45,0.485]	chr20	775551	15	EXON_LNCRNA	EXON_LNCRNA	ENSG00000287569	ENSG00000287569.1	ENST00000668826.1	lncRNA	lncRNA	lncRNA	lncRNA	0	53	2	5.01267	5.110865	5.20906	0.0399616	0.011221	0.133954	0.071709
chr3	188824631	188824731	1658528	0	+	0.47	(0.45,0.485]	chr3	173846	640	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000459897.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	5.01267	5.110865	5.20906	0.0399616	0.011221	0.133954	0.071709
chr16	895966	896065	6530981	0	-	0.676768	(0.58,1]	chr16	648670	25	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000566627.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.76284	5.11078	5.45872	0.0471737	0.00211999	0.143232	0.0239744
chr20	63733486	63733586	7509375	0	+	0.61	(0.58,1]	chr20	783521	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1:ENST00000632538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	4.76284	5.11078	5.45872	0.0471737	0.00211999	0.143232	0.0239744
chr11	70742084	70742184	5061702	0	-	0.57	(0.523,0.58]	chr11	492701	242	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	118	2	3.72444	5.11051	6.49658	0.00470358	0.00424382	0.0422099	0.0413976
chr11	70743083	70743183	5061712	0	-	0.62	(0.58,1]	chr11	492701	252	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	4.66416	5.110485	5.55681	0.0144381	0.0126042	0.0833845	0.0761905
chr16	85436316	85436416	6517434	0	+	0.65	(0.58,1]	chr16	646391	770	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.66416	5.110485	5.55681	0.0144381	0.0126042	0.0833845	0.0761905
chr22	48752631	48752731	7751796	0	+	0.64	(0.58,1]	chr22	812294	8	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000336769.9	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.66416	5.110485	5.55681	0.0144381	0.0126042	0.0833845	0.0761905
chr10	112220799	112220899	4760977	0	-	0.45	(0.419,0.45]	chr10	455266	25	INTRON	INTRON	ENSG00000288938	ENSG00000288938.1	ENST00000693577.1	lncRNA	lncRNA	lncRNA	lncRNA	1	158	2	3.08499	5.11004	7.13509	0.0509743	7.8188e-5	0.148503	0.00227541
chr3	149180353	149180449	1939231	0	-	0.520833	(0.485,0.523]	chr3	197325	3	INTRON	INTRON	CP	ENSG00000047457.14	ENST00000481169.5:ENST00000264613.11:ENST00000494544.1:ENST00000490639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	214	2	3.91163	5.110015	6.3084	0.00481403	3.92049e-4	0.0453395	0.00735595
chr10	102649378	102649478	4576518	0	+	0.67	(0.58,1]	chr10	437283	1	SS5_PROX	SS5_PROX:INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1:ENST00000487927.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	106	2	4.23567	5.109445	5.98322	0.00562007	8.49275e-4	0.0493906	0.0126615
chr19	4335039	4335138	7312821	0	-	0.494949	(0.485,0.523]	chr19	754660	6	INTRON	INTRON	STAP2	ENSG00000178078.12	ENST00000594605.6:ENST00000600324.5:ENST00000599736.5:ENST00000601482.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	62	2	4.33772	5.1094349999999995	5.88115	0.03818	0.012541	0.140822	0.0761905
chr13	93911338	93911438	5624627	0	+	0.37	(0.36,0.39]	chr13	553064	804	INTRON	INTRON	GPC6	ENSG00000183098.11	ENST00000377047.9	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.56076	5.109389999999999	5.65802	0.103289	0.003279	0.197541	0.0322062
chr2	26092662	26092762	731406	0	+	0.36	(0.33,0.36]	chr2	85215	500	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	53	2	5.05937	5.1093399999999995	5.15931	0.043896	0.0112642	0.139792	0.071709
chr3	134246224	134246324	1920289	0	-	0.35	(0.33,0.36]	chr3	195308	233	INTRON	INTRON	RYK	ENSG00000163785.13	ENST00000623711.4:ENST00000460933.5:ENST00000620660.4	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.05937	5.1093399999999995	5.15931	0.043896	0.0112642	0.139792	0.071709
chr7	135937307	135937407	3719035	0	-	0.35	(0.33,0.36]	chr7	357215	69	INTRON	INTRON	MTPN	ENSG00000105887.11	ENST00000393085.4:ENST00000435723.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.05937	5.1093399999999995	5.15931	0.043896	0.0112642	0.139792	0.071709
chr16	89300715	89300813	6659813	0	-	0.581633	(0.58,1]	chr16	666649	20	UTR3	UTR3:EXON_MRNA:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	106	2	4.0743	5.109285	6.14427	0.00407804	0.00136577	0.0413652	0.0176851
chr12	23790492	23790591	5386926	0	-	0.515152	(0.485,0.523]	chr12	528175	275	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000537393.5:ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	315	2	4.31771	5.109145	5.90058	0.00511595	7.95885e-6	0.0469215	4.36503e-4
chr10	76062382	76062482	4526797	0	+	0.57	(0.523,0.58]	chr10	432311	32	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	5.01677	5.108905	5.20104	0.0482765	0.00648051	0.144601	0.0503748
chr8	133542088	133542186	4085246	0	-	0.530612	(0.523,0.58]	chr8	388452	20	INTRON	INTRON	ST3GAL1	ENSG00000008513.16	ENST00000399640.3:ENST00000522652.6:ENST00000521180.5:ENST00000648219.1:ENST00000517668.5:ENST00000518298.5:ENST00000519435.5:ENST00000522873.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	5.01677	5.108905	5.20104	0.0482765	0.00648051	0.144601	0.0503748
chr14	89181694	89181792	6025908	0	-	0.44898	(0.419,0.45]	chr14	591409	5	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000556541.1:ENST00000555010.1:ENST00000557496.1:ENST00000557718.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	55	2	4.85365	5.1088000000000005	5.36395	0.0407485	0.0197641	0.135868	0.100774
chr2	177421951	177422050	962891	0	+	0.373737	(0.36,0.39]	chr2	105597	12	INTRON	INTRON	AGPS	ENSG00000018510.18	ENST00000679459.1:ENST00000637633.2:ENST00000680770.1:ENST00000680705.1:ENST00000681752.1:ENST00000460342.2:ENST00000681565.1:ENST00000680893.1:ENST00000681032.1:ENST00000679421.1:ENST00000680910.1:ENST00000680677.1:ENST00000409888.1:ENST00000642466.2:ENST00000264167.11:ENST00000680155.1:ENST00000679478.1:ENST00000681449.1:ENST00000681891.1:ENST00000681028.1:ENST00000679639.1:ENST00000680028.1:ENST00000679994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	146	2	3.61283	5.108685	6.60454	0.0214602	2.93176e-4	0.100496	0.00597401
chr14	91222213	91222309	5899579	0	+	0.583333	(0.58,1]	chr14	576435	16	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	52	2	4.62403	5.108635	5.59324	0.0578275	0.0014734	0.154343	0.0185589
chr19	33806165	33806263	7241206	0	+	0.602041	(0.58,1]	chr19	741479	45	INTRON	INTRON	KCTD15	ENSG00000153885.15	ENST00000587658.5:ENST00000587559.5:ENST00000588637.5:ENST00000284006.10:ENST00000589786.5:ENST00000683859.1:ENST00000588881.5:ENST00000430256.3	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.62403	5.108635	5.59324	0.0578275	0.0014734	0.154343	0.0185589
chr4	5783451	5783551	2009960	0	+	0.62	(0.58,1]	chr4	205034	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	EVC	ENSG00000072840.13	ENST00000264956.11	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.62403	5.108635	5.59324	0.0578275	0.0014734	0.154343	0.0185589
chr4	1325373	1325470	1995292	0	+	0.453608	(0.45,0.485]	chr4	203264	14	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	56	2	4.49786	5.10857	5.71928	0.101311	0.00219685	0.196131	0.0245167
chrX	30859386	30859486	8001173	0	-	0.36	(0.33,0.36]	chrX	836742	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TAB3	ENSG00000157625.16	ENST00000378933.5:ENST00000288422.4:ENST00000378930.7:ENST00000378932.6:ENST00000467136.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	133	2	3.34409	5.108375	6.87266	0.0131368	0.00258098	0.0788915	0.0321738
chr2	54655511	54655609	800307	0	+	0.489796	(0.485,0.523]	chr2	90947	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000333896.5:ENST00000496323.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	191	2	2.98147	5.108225	7.23498	0.0261434	2.48079e-5	0.110034	9.81945e-4
chr12	64659993	64660093	5250860	0	+	0.27	[0,0.29]	chr12	511993	370	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.99924	5.108125	5.21701	0.0347661	0.00547146	0.126529	0.0454065
chr12	109147718	109147818	5321874	0	+	0.42	(0.419,0.45]	chr12	518491	73	INTRON	INTRON	ACACB	ENSG00000076555.16	ENST00000338432.12:ENST00000377848.7:ENST00000377854.9:ENST00000546328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	4.81671	5.108025	5.39934	0.08258	0.00646489	0.179396	0.0503748
chr3	70955781	70955880	1824938	0	-	0.444444	(0.419,0.45]	chr3	188016	12	UTR3	UTR3:EXON_MRNA	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.81671	5.108025	5.39934	0.08258	0.00646489	0.179396	0.0503748
chr2	239260193	239260293	1391310	0	-	0.58	(0.523,0.58]	chr2	148740	86	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	52	2	4.96197	5.1080000000000005	5.25403	0.0521137	0.00573579	0.148503	0.0467736
chr3	39147122	39147222	1739960	0	-	0.57	(0.523,0.58]	chr3	180187	4	SS3_PROX	SS3_PROX:INTRON	CSRNP1	ENSG00000144655.15	ENST00000273153.10:ENST00000514182.1	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.96197	5.1080000000000005	5.25403	0.0521137	0.00573579	0.148503	0.0467736
chr6	147741554	147741654	3029584	0	+	0.5	(0.485,0.523]	chr6	295875	41	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	3	185	2	3.52105	5.107965	6.69488	0.00290687	0.00140695	0.0342042	0.0180659
chr11	63854117	63854216	4866953	0	+	0.535354	(0.523,0.58]	chr11	466767	37	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.06957	5.107794999999999	5.14602	0.0448011	0.00734367	0.140478	0.0550721
chr17	27491342	27491441	6702701	0	+	0.575758	(0.523,0.58]	chr17	672853	71	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000583370.5:ENST00000398988.7:ENST00000268763.10:ENST00000509603.6:ENST00000582311.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	5.06957	5.107794999999999	5.14602	0.0448011	0.00734367	0.140478	0.0550721
chr1	18894979	18895079	408023	0	-	0.47	(0.45,0.485]	chr1	47295	42	INTRON	INTRON	ALDH4A1	ENSG00000159423.17	ENST00000375341.8:ENST00000290597.9:ENST00000538839.5:ENST00000432718.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.5725	5.10765	5.6428	0.0926859	0.00265386	0.188571	0.027979
chr15	76338814	76338914	6156243	0	+	0.46	(0.45,0.485]	chr15	605683	3	SS5_PROX	SS5_PROX:INTRON	ISL2	ENSG00000159556.10	ENST00000290759.9:ENST00000558656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	4.5725	5.10765	5.6428	0.0926859	0.00265386	0.188571	0.027979
chr12	123654027	123654126	5347071	0	+	0.393939	(0.39,0.419]	chr12	522778	9	INTRON	INTRON	GTF2H3	ENSG00000111358.14	ENST00000618160.4:ENST00000542279.5:ENST00000543341.7:ENST00000228955.11:ENST00000538845.5:ENST00000539994.5:ENST00000537695.5:ENST00000536375.5:ENST00000543415.5:ENST00000538533.5:ENST00000543154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	4.76257	5.107515	5.45246	0.0822354	0.00529344	0.179396	0.044517
chr4	38915772	38915872	2031422	0	+	0.33	(0.29,0.33]	chr4	207358	3	INTRON	INTRON	FAM114A1	ENSG00000197712.12	ENST00000515037.5:ENST00000358869.5:ENST00000512889.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	58	2	4.51618	5.1075099999999996	5.69884	0.0285091	0.0155382	0.123012	0.0849828
chr10	15229553	15229653	4637011	0	-	0.5	(0.485,0.523]	chr10	443055	81	INTRON	INTRON	FAM171A1	ENSG00000148468.17	ENST00000378116.9:ENST00000477161.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	5.01719	5.107340000000001	5.19749	0.0480495	0.00672953	0.144601	0.0519464
chr17	78718022	78718122	6978670	0	-	0.45	(0.419,0.45]	chr17	712611	11	INTRON	INTRON	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000589297.5:ENST00000591574.5:ENST00000590775.5:ENST00000589768.5:ENST00000586043.5:ENST00000587308.5:ENST00000590300.1:ENST00000591095.1:ENST00000592497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	54	2	4.98054	5.107305	5.23407	0.0486006	0.0154548	0.145074	0.0869771
chr3	71575538	71575637	1831213	0	-	0.585859	(0.58,1]	chr3	188274	12	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000650068.2:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1:ENST00000647649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	107	2	4.38079	5.10727	5.83375	0.00751249	5.47609e-4	0.0576451	0.0093303
chr1	26854623	26854720	69805	0	+	0.329897	(0.29,0.33]	chr1	7824	9	UTR3	UTR3:EXON_MRNA:INTRON	ZDHHC18	ENSG00000204160.12	ENST00000374142.9:ENST00000488397.3	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.96914	5.107145	5.24515	0.0481918	0.00631714	0.144601	0.0501889
chr17	17820692	17820778	6865727	0	-	0.534884	(0.523,0.58]	chr17	695913	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000395751.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	160	2	3.23118	5.107065	6.98295	0.00547248	0.00168728	0.0454065	0.0254298
chr11	70802034	70802133	5062303	0	-	0.626263	(0.58,1]	chr11	492707	31	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5:ENST00000460048.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	4.81862	5.10704	5.39546	0.0168207	0.0102696	0.0884836	0.0678072
chr16	29264716	29264816	6433484	0	+	0.59	(0.58,1]	chr16	636745	126	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	52	2	4.81862	5.10704	5.39546	0.0168207	0.0102696	0.0884836	0.0678072
chr17	82151359	82151459	6987887	0	-	0.62	(0.58,1]	chr17	714578	4	SS5_PROX	SS5_PROX:INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000419322.6:ENST00000392346.6:ENST00000582040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	52	2	4.81862	5.10704	5.39546	0.0168207	0.0102696	0.0884836	0.0678072
chr14	30921204	30921304	5950940	0	-	0.22	[0,0.29]	chr14	583071	17	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000366206.2:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	118	2	4.62606	5.10693	5.5878	0.0128957	3.5108e-4	0.0773953	0.00678276
chr2	111401812	111401912	1252654	0	-	0.47	(0.45,0.485]	chr2	134896	235	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1	lncRNA	lncRNA	lncRNA	lncRNA	1	145	2	3.28219	5.10675	6.93131	0.0334207	7.8924e-5	0.12421	0.0022885
chr18	77018377	77018477	7180498	0	-	0.5	(0.485,0.523]	chr18	730157	7	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000580402.5:ENST00000580473.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000495162.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	4.52142	5.10671	5.692	0.0273555	0.0171772	0.119337	0.0895975
chr21	34086494	34086594	7614846	0	+	0.37	(0.36,0.39]	chr21	795327	124	INTRON	INTRON	MRPS6:SLC5A3	ENSG00000243927.6:ENSG00000198743.7	ENST00000488492.5:ENST00000477091.5:ENST00000399312.3:ENST00000381151.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	121	2	4.21215	5.10657	6.00099	0.0139273	0.00172878	0.0805916	0.0208639
chr10	18556068	18556168	4642289	0	-	0.4	(0.39,0.419]	chr10	443321	37	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.64779	5.106484999999999	5.56518	0.027797	0.0273358	0.119337	0.112962
chr7	74529533	74529633	3392129	0	+	0.51	(0.485,0.523]	chr7	327390	4	SS3_PROX	SS3_PROX:INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6:ENST00000476977.5:ENST00000489094.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	4.96239	5.106434999999999	5.25048	0.0518747	0.0059614	0.148503	0.0479866
chr11	68421497	68421597	4883185	0	+	0.56	(0.523,0.58]	chr11	470622	46	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	157	2	3.32948	5.106365	6.88325	0.0042482	0.00204616	0.0383564	0.0283511
chr1	248854715	248854797	709841	0	-	0.512195	(0.485,0.523]	chr1	83013	3	INTRON	INTRON	ZNF692	ENSG00000171163.16	ENST00000463519.5:ENST00000306601.9:ENST00000366471.7:ENST00000533927.5:ENST00000476503.5:ENST00000477070.6:ENST00000412341.6:ENST00000482023.5:ENST00000451251.5:ENST00000470787.6:ENST00000474351.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	5.06999	5.106235	5.14248	0.0445854	0.00761903	0.140478	0.0561937
chr10	44968264	44968364	4483211	0	+	0.52	(0.485,0.523]	chr10	428600	80	INTRON	INTRON	RASSF4	ENSG00000107551.21	ENST00000489171.5:ENST00000340258.10:ENST00000427758.5:ENST00000483709.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	5.06999	5.106235	5.14248	0.0445854	0.00761903	0.140478	0.0561937
chr11	14301632	14301731	4998862	0	-	0.50505	(0.485,0.523]	chr11	483716	54	INTRON	INTRON	RRAS2	ENSG00000133818.14	ENST00000256196.9:ENST00000537760.5:ENST00000529237.5:ENST00000534746.5:ENST00000526063.5:ENST00000532814.5:ENST00000531807.5:ENST00000532950.5:ENST00000531421.5:ENST00000526717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	5.06999	5.106235	5.14248	0.0445854	0.00761903	0.140478	0.0561937
chr19	16875554	16875648	7218141	0	+	0.521277	(0.485,0.523]	chr19	737688	1	SS3_PROX	SS3_PROX:INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000595541.1	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.06999	5.106235	5.14248	0.0445854	0.00761903	0.140478	0.0561937
chr19	38379605	38379705	7257520	0	+	0.52	(0.485,0.523]	chr19	743867	2	SS5_PROX	SS5_PROX:INTRON	PSMD8	ENSG00000099341.12	ENST00000620216.4:ENST00000215071.9:ENST00000585598.1:ENST00000602911.5:ENST00000592561.5:ENST00000592001.5:ENST00000592035.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	52	2	5.06999	5.106235	5.14248	0.0445854	0.00761903	0.140478	0.0561937
chr2	102112071	102112171	863506	0	+	0.51	(0.485,0.523]	chr2	97787	68	INTRON	INTRON	IL1R1	ENSG00000115594.12	ENST00000452403.5:ENST00000409929.5:ENST00000424272.5:ENST00000409589.5:ENST00000409329.5	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.06999	5.106235	5.14248	0.0445854	0.00761903	0.140478	0.0561937
chr22	50680995	50681092	7754979	0	+	0.505155	(0.485,0.523]	chr22	812716	12	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	52	2	5.06999	5.106235	5.14248	0.0445854	0.00761903	0.140478	0.0561937
chr1	111726281	111726379	561661	0	-	0.540816	(0.523,0.58]	chr1	64439	33	UTR3	UTR3:EXON_MRNA:INTRON	INKA2	ENSG00000197852.12	ENST00000527570.1:ENST00000357260.6:ENST00000534365.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	4.71922	5.10622	5.49322	0.0721601	0.00324246	0.168159	0.0319521
chr1	61334583	61334682	148634	0	+	0.272727	[0,0.29]	chr1	17176	16	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1:ENST00000657234.1:ENST00000655770.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.94223	5.1061250000000005	5.27002	0.0379936	0.0048238	0.131324	0.0417661
chr2	149613932	149614032	920085	0	+	0.36	(0.33,0.36]	chr2	102788	195	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	1	124	2	4.49774	5.106065	5.71439	0.0191308	7.43871e-4	0.0952349	0.0115713
chr9	131587335	131587435	4418990	0	-	0.46	(0.45,0.485]	chr9	421910	2	SS5_PROX	SS5_PROX:INTRON	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000372189.7:ENST00000683357.1:ENST00000372190.7	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.74641	5.105995	5.46558	0.0273644	0.0193126	0.112372	0.0994526
chr8	122886926	122887026	3910715	0	+	0.47	(0.45,0.485]	chr8	373489	230	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6:ENST00000534247.1	protein_coding	protein_coding	protein_coding	protein_coding	2	327	2	5.00438	5.105840000000001	5.2073	0.00102436	1.54619e-4	0.0192318	0.00376396
chr1	12582259	12582359	402425	0	-	0.32	(0.29,0.33]	chr1	46222	12	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	122	2	3.56103	5.105745	6.65046	0.00731654	0.00278312	0.0550721	0.0334064
chr5	150516203	150516303	2565173	0	+	0.59	(0.58,1]	chr5	254953	76	INTRON	INTRON	NDST1	ENSG00000070614.15	ENST00000522491.1:ENST00000519157.1:ENST00000524161.1:ENST00000523767.5:ENST00000518299.1:ENST00000518346.1:ENST00000261797.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	4.58025	5.105715	5.63118	0.0172566	0.0109983	0.0923809	0.0708586
chr16	31757979	31758078	6441098	0	+	0.383838	(0.36,0.39]	chr16	638752	24	UTR3	UTR3:EXON_MRNA:INTRON	KRBOX5	ENSG00000197302.11	ENST00000539915.5:ENST00000316491.14:ENST00000529515.2:ENST00000534277.5:ENST00000531864.6:ENST00000689850.1:ENST00000534369.1:ENST00000542684.5:ENST00000544044.1:ENST00000692451.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	146	2	3.49227	5.10557	6.71887	0.0260212	2.14172e-4	0.109673	0.00475596
chr18	69605095	69605195	7085226	0	+	0.38	(0.36,0.39]	chr18	722127	52	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.99672	5.10536	5.214	0.0604395	0.00887999	0.158506	0.0618231
chr1	89874840	89874940	181239	0	+	0.32	(0.29,0.33]	chr1	19585	278	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.72635	5.10533	5.48431	0.0672935	0.00360762	0.163263	0.0342681
chr2	62843434	62843534	815338	0	+	0.38	(0.36,0.39]	chr2	92109	119	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000449820.5:ENST00000405482.5:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding	1	120	2	4.00972	5.105285	6.20085	0.0100561	0.0028904	0.0677306	0.0297318
chr1	17682876	17682976	55040	0	+	0.56	(0.523,0.58]	chr1	5603	179	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	53	2	4.90222	5.105085	5.30795	0.0315825	0.0125132	0.120781	0.0765738
chr10	102648015	102648114	4576504	0	+	0.535354	(0.523,0.58]	chr10	437280	18	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	52	2	4.905	5.105075	5.30515	0.0563605	0.00509102	0.154188	0.0433513
chr16	1726659	1726758	6371202	0	+	0.545455	(0.523,0.58]	chr16	628837	16	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000685565.1:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	52	2	4.905	5.105075	5.30515	0.0563605	0.00509102	0.154188	0.0433513
chr16	81613919	81614019	6509435	0	+	0.55	(0.523,0.58]	chr16	645921	30	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	52	2	4.905	5.105075	5.30515	0.0563605	0.00509102	0.154188	0.0433513
chr16	23466991	23467091	6568568	0	-	0.4	(0.39,0.419]	chr16	655371	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000567339.1:ENST00000568922.1:ENST00000566685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	166	2	3.27682	5.10504	6.93326	0.0059921	0.00291102	0.0482222	0.0342042
chr8	133296830	133296924	4084299	0	-	0.585106	(0.58,1]	chr8	388372	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000520943.5:ENST00000521544.5:ENST00000523892.5:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	411	2	3.9863	5.104985	6.22367	0.0017591	3.92417e-5	0.0211077	0.00349482
chr1	204082676	204082776	322146	0	+	0.55	(0.523,0.58]	chr1	36272	41	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1:ENST00000528591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	5.08882	5.10466	5.1205	0.0416463	0.00834774	0.136301	0.0598672
chr20	49074086	49074185	7491651	0	+	0.525253	(0.523,0.58]	chr20	781040	10	INTRON	INTRON	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.08882	5.10466	5.1205	0.0416463	0.00834774	0.136301	0.0598672
chr6	166340034	166340133	3301474	0	-	0.545455	(0.523,0.58]	chr6	319660	83	INTRON	INTRON	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000478705.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	5.08882	5.10466	5.1205	0.0416463	0.00834774	0.136301	0.0598672
chr9	114157003	114157101	4225715	0	+	0.571429	(0.523,0.58]	chr9	400740	6	INTRON	INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.08882	5.10466	5.1205	0.0416463	0.00834774	0.136301	0.0598672
chr14	91222888	91222985	5899586	0	+	0.515464	(0.485,0.523]	chr14	576435	23	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	53	2	4.71964	5.1046499999999995	5.48966	0.0718646	0.0033837199999999998	0.168159	0.0328791
chr22	42956585	42956684	7823697	0	-	0.50505	(0.485,0.523]	chr22	820622	97	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000407585.5:ENST00000402229.5:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5:ENST00000453079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	4.71964	5.1046499999999995	5.48966	0.0718646	0.0033837199999999998	0.168159	0.0328791
chrX	48942600	48942699	8040901	0	-	0.50505	(0.485,0.523]	chrX	838808	59	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	4.71964	5.1046499999999995	5.48966	0.0718646	0.0033837199999999998	0.168159	0.0328791
chr19	5900245	5900343	7318273	0	-	0.438776	(0.419,0.45]	chr19	755741	29	INTRON	INTRON	NDUFA11	ENSG00000174886.14	ENST00000418389.6:ENST00000308961.5:ENST00000592634.5:ENST00000593233.1:ENST00000650663.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	164	2	3.52782	5.104620000000001	6.68142	0.00529005	0.00339558	0.047841	0.0329809
chr11	83161952	83162046	4908415	0	+	0.393617	(0.39,0.419]	chr11	473768	1	INTRON	INTRON	PCF11	ENSG00000165494.12	ENST00000298281.8:ENST00000530660.5:ENST00000690938.1:ENST00000530304.5:ENST00000533018.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.99538	5.10441	5.21344	0.0613573	0.00893514	0.158506	0.0620271
chr16	16274343	16274427	6408428	0	+	0.392857	(0.39,0.419]	chr16	633349	3	SS5_PROX	SS5_PROX:INTRON	NOMO3	ENSG00000103226.19	ENST00000676846.1:ENST00000399336.9:ENST00000677912.1:ENST00000677777.1:ENST00000678192.1:ENST00000678393.1:ENST00000678538.1:ENST00000679086.1:ENST00000574894.2:ENST00000678080.1:ENST00000677260.1:ENST00000676550.1:ENST00000263012.10:ENST00000575225.5:ENST00000677781.1:ENST00000677163.1:ENST00000678148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	53	2	4.99538	5.10441	5.21344	0.0613573	0.00893514	0.158506	0.0620271
chr4	3364094	3364194	2005077	0	+	0.4	(0.39,0.419]	chr4	204663	207	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	53	2	4.99538	5.10441	5.21344	0.0613573	0.00893514	0.158506	0.0620271
chr13	113055603	113055703	5656193	0	+	0.63	(0.58,1]	chr13	555189	8	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	1	130	2	4.08431	5.104375	6.12444	0.00525202	3.17437e-4	0.0476984	0.00632787
chr1	90027053	90027153	182193	0	+	0.33	(0.29,0.33]	chr1	19661	3	SS3_PROX	SS3_PROX:INTRON	ZNF326	ENSG00000162664.17	ENST00000340281.9:ENST00000394583.7:ENST00000370447.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.91217	5.104215	5.29626	0.0522244	0.005619	0.148503	0.0462026
chr17	529273	529372	6822436	0	-	0.323232	(0.29,0.33]	chr17	689687	29	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681050.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000681600.1:ENST00000576149.5:ENST00000681917.1:ENST00000681103.1:ENST00000681858.1:ENST00000570771.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	4.91217	5.104215	5.29626	0.0522244	0.005619	0.148503	0.0462026
chrX	120612663	120612763	7946191	0	+	0.32	(0.29,0.33]	chrX	831419	5	UTR3	UTR3:EXON_MRNA	MCTS1	ENSG00000232119.8	ENST00000371317.10	protein_coding	protein_coding	protein_coding	protein_coding	1	115	2	3.93355	5.10403	6.27451	0.00564709	0.00289464	0.0495171	0.0297681
chr3	93956813	93956913	1853008	0	-	0.36	(0.33,0.36]	chr3	189045	277	INTRON	INTRON	PROS1	ENSG00000184500.16	ENST00000394236.9:ENST00000648381.1:ENST00000648853.1:ENST00000650591.1:ENST00000348974.5:ENST00000647936.1:ENST00000407433.6:ENST00000649103.1:ENST00000472684.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	53	2	4.83538	5.104	5.37262	0.0679743	0.00569729	0.164413	0.046716
chr2	53983074	53983174	795031	0	+	0.4	(0.39,0.419]	chr2	90708	78	INTRON	INTRON	ACYP2	ENSG00000170634.13	ENST00000458030.3:ENST00000422521.2:ENST00000607452.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	120	2	4.03173	5.1038499999999996	6.17597	0.0107103	0.00274594	0.0701493	0.028553
chr2	186357852	186357952	1340885	0	-	0.42	(0.419,0.45]	chr2	142335	316	INTRON	INTRON	LINC01473	ENSG00000237877.7	ENST00000667056.1:ENST00000671599.1	lncRNA	lncRNA	lncRNA	lncRNA	1	123	2	4.24272	5.103735	5.96475	0.0169309	0.00171002	0.088829	0.0206538
chr16	47400314	47400414	6585197	0	-	0.5	(0.485,0.523]	chr16	658341	42	INTRON	INTRON	ITFG1	ENSG00000129636.13	ENST00000320640.11:ENST00000544001.6:ENST00000569551.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	53	2	4.8987	5.103535	5.30837	0.0314138	0.0129327	0.12069	0.0778105
chr3	65795722	65795822	1813432	0	-	0.5	(0.485,0.523]	chr3	187296	752	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	53	2	4.8987	5.103535	5.30837	0.0314138	0.0129327	0.12069	0.0778105
chr8	73646870	73646970	3998330	0	-	0.36	(0.33,0.36]	chr8	382473	291	INTRON	INTRON	STAU2	ENSG00000040341.18	ENST00000524300.6:ENST00000522695.5:ENST00000523558.5:ENST00000521210.5:ENST00000355780.9:ENST00000519961.5:ENST00000521727.5:ENST00000521451.5:ENST00000522509.5:ENST00000517542.5:ENST00000518981.5:ENST00000518767.5:ENST00000518502.5:ENST00000521293.5:ENST00000521447.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	53	2	4.99985	5.10336	5.20687	0.041040600000000003	0.0127452	0.136289	0.0773423
chr14	31573034	31573134	5773587	0	+	0.41	(0.39,0.419]	chr14	566268	76	INTRON	INTRON	NUBPL	ENSG00000151413.17	ENST00000550649.5:ENST00000547839.5:ENST00000281081.12:ENST00000548937.5:ENST00000552489.5:ENST00000549838.5:ENST00000550355.1:ENST00000551314.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	55	2	4.79402	5.10328	5.41254	0.0347088	0.0208208	0.12648	0.102713
chr8	130372870	130372970	4082927	0	-	0.42	(0.419,0.45]	chr8	388177	107	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000521075.5:ENST00000520927.5:ENST00000524299.1:ENST00000521426.5:ENST00000520625.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	132	2	4.61308	5.103115	5.59315	0.029494	6.47861e-4	0.116079	0.0104732
chr19	6719841	6719903	7322985	0	-	0.5	(0.485,0.523]	chr19	756566	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695652.1:ENST00000594936.2:ENST00000695693.1:ENST00000600744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	52	2	5.08528	5.1030999999999995	5.12092	0.0414411	0.0086528	0.136301	0.0612699
chr2	71410369	71410468	829685	0	+	0.50505	(0.485,0.523]	chr2	93660	12	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000409544.5:ENST00000264447.9:ENST00000487638.5:ENST00000494241.5:ENST00000409407.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	52	2	5.08528	5.1030999999999995	5.12092	0.0414411	0.0086528	0.136301	0.0612699
chr13	113053610	113053705	5656172	0	+	0.610526	(0.58,1]	chr13	555185	10	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.94882	5.103065000000001	5.25731	0.0354433	0.00358178	0.127188	0.0342681
chr2	239221512	239221612	1390919	0	-	0.6	(0.58,1]	chr2	148726	306	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000496347.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	50	2	4.94882	5.103065000000001	5.25731	0.0354433	0.00358178	0.127188	0.0342681
chr2	239340089	239340189	1392111	0	-	0.65	(0.58,1]	chr2	148752	156	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	50	2	4.94882	5.103065000000001	5.25731	0.0354433	0.00358178	0.127188	0.0342681
chr13	77326073	77326173	5734519	0	-	0.52	(0.485,0.523]	chr13	562331	2	SS5_PROX	SS5_PROX:INTRON	MYCBP2	ENSG00000005810.20	ENST00000683823.1:ENST00000684354.1:ENST00000682321.1:ENST00000695079.1:ENST00000683697.1:ENST00000357337.11:ENST00000544440.7:ENST00000695080.1:ENST00000695081.1:ENST00000695090.1:ENST00000695091.1:ENST00000695094.1:ENST00000695095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	114	2	4.10606	5.10305	6.10004	0.00860355	0.00177809	0.0623467	0.0212512
chr1	3891779	3891875	386339	0	-	0.583333	(0.58,1]	chr1	44329	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	C1orf174	ENSG00000198912.12	ENST00000474140.1:ENST00000486765.5:ENST00000361605.4:ENST00000679703.1:ENST00000680054.1:ENST00000680279.1:ENST00000681823.1:ENST00000679946.1:ENST00000680169.1:ENST00000680535.1:ENST00000679929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	50	2	5.0607	5.102835	5.14497	0.029633	0.00474658	0.116079	0.0413976
chr2	240614492	240614592	1075084	0	+	0.62	(0.58,1]	chr2	116637	71	INTRON	INTRON	CAPN10:GPR35	ENSG00000142330.20:ENSG00000178623.13	ENST00000270364.11:ENST00000319838.10:ENST00000403859.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.0607	5.102835	5.14497	0.029633	0.00474658	0.116079	0.0413976
chr5	177451675	177451774	2600322	0	+	0.646465	(0.58,1]	chr5	258321	29	INTRON	INTRON	PRR7	ENSG00000131188.12	ENST00000507881.5:ENST00000323249.8:ENST00000502922.5:ENST00000510492.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.0607	5.102835	5.14497	0.029633	0.00474658	0.116079	0.0413976
chr18	12705552	12705651	7020698	0	+	0.454545	(0.45,0.485]	chr18	717128	20	INTRON	INTRON	PSMG2	ENSG00000128789.21	ENST00000585331.6:ENST00000586445.5:ENST00000590217.5:ENST00000586587.1:ENST00000317615.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	4.95056	5.10283	5.2551	0.0373953	0.0127826	0.130656	0.0773423
chr4	146326895	146326995	2334688	0	-	0.47	(0.45,0.485]	chr4	234354	5	INTRON	INTRON	SLC10A7	ENSG00000120519.16	ENST00000432059.6:ENST00000335472.12:ENST00000693222.1:ENST00000507030.5:ENST00000511315.2:ENST00000507560.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	53	2	4.95056	5.10283	5.2551	0.0373953	0.0127826	0.130656	0.0773423
chr5	119460791	119460888	2518001	0	+	0.453608	(0.45,0.485]	chr5	250043	1	INTRON	INTRON	HSD17B4	ENSG00000133835.18	ENST00000683936.1:ENST00000511186.5:ENST00000509514.6:ENST00000682996.1:ENST00000684214.1:ENST00000683974.1:ENST00000414835.7:ENST00000442060.7:ENST00000510025.7:ENST00000515320.5:ENST00000646590.1:ENST00000646058.1:ENST00000682445.1:ENST00000515235.6:ENST00000518349.6:ENST00000683371.1:ENST00000683390.1:ENST00000512841.6:ENST00000645832.1:ENST00000644146.1:ENST00000519184.5:ENST00000646355.1:ENST00000647335.1:ENST00000682531.1:ENST00000683265.1:ENST00000646554.1:ENST00000684160.1:ENST00000682626.1:ENST00000647342.1:ENST00000643250.1:ENST00000503168.5:ENST00000507695.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	53	2	4.95056	5.10283	5.2551	0.0373953	0.0127826	0.130656	0.0773423
chr5	172853025	172853125	2590603	0	+	0.47	(0.45,0.485]	chr5	257046	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ERGIC1	ENSG00000113719.17	ENST00000393784.8:ENST00000690799.1:ENST00000686615.1:ENST00000684928.1:ENST00000519860.3:ENST00000691612.1:ENST00000687901.1:ENST00000689975.1:ENST00000326654.7:ENST00000693299.1:ENST00000687702.1:ENST00000685391.1:ENST00000520326.6:ENST00000520642.5:ENST00000686955.1:ENST00000689977.1:ENST00000523291.5:ENST00000692557.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	53	2	4.95056	5.10283	5.2551	0.0373953	0.0127826	0.130656	0.0773423
chr2	25277911	25278009	1105338	0	-	0.459184	(0.45,0.485]	chr2	120762	20	INTRON	INTRON	DNMT3A	ENSG00000119772.19	ENST00000264709.7:ENST00000321117.10:ENST00000380756.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	4.64346	5.1027450000000005	5.56203	0.0850039	0.00322991	0.181766	0.0319521
chr2	74432199	74432288	1193245	0	-	0.47191	(0.45,0.485]	chr2	129598	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	RTKN	ENSG00000114993.17	ENST00000272430.10:ENST00000305557.9:ENST00000233330.6:ENST00000479256.1:ENST00000472518.1:ENST00000464094.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	54	2	4.64346	5.1027450000000005	5.56203	0.0850039	0.00322991	0.181766	0.0319521
chr13	113215261	113215361	5657360	0	+	0.54	(0.523,0.58]	chr13	555523	48	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000488558.2:ENST00000375440.9:ENST00000474116.5:ENST00000494985.5:ENST00000463426.5:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	138	2	3.68393	5.102475	6.52102	0.0162298	2.02818e-4	0.0873195	0.0045746
chr22	25612441	25612540	7702238	0	+	0.393939	(0.39,0.419]	chr22	806000	76	INTRON	INTRON	GRK3	ENSG00000100077.16	ENST00000324198.11:ENST00000455558.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	5.09906	5.102285	5.10551	0.0535378	0.0112089	0.150319	0.071709
chr22	41134318	41134417	7731234	0	+	0.444444	(0.419,0.45]	chr22	810051	23	INTRON	INTRON	EP300	ENSG00000100393.14	ENST00000263253.9:ENST00000674155.1:ENST00000634690.1	protein_coding	protein_coding	protein_coding	protein_coding	1	122	2	4.15996	5.102185	6.04441	0.0149622	0.00210951	0.0835955	0.0239744
chr19	16875454	16875554	7218140	0	+	0.53	(0.523,0.58]	chr19	737687	29	INTRON	INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000595541.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.50593	5.1021350000000005	5.69834	0.094303	0.00194036	0.188571	0.0225083
chr13	75392190	75392290	5727106	0	-	0.28	[0,0.29]	chr13	561722	150	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.88286	5.102005	5.32115	0.041613	0.00426525	0.136301	0.0384752
chr13	46575402	46575502	5584128	0	+	0.45	(0.419,0.45]	chr13	550714	213	INTRON	INTRON	LRCH1	ENSG00000136141.15	ENST00000311191.10:ENST00000389797.8:ENST00000443945.6:ENST00000389798.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	153	2	3.91687	5.101995	6.28712	0.014186	7.76382e-4	0.0816012	0.0118807
chr1	211087574	211087674	653777	0	-	0.5	(0.485,0.523]	chr1	77149	43	INTRON	INTRON	KCNH1	ENSG00000143473.13	ENST00000367007.5:ENST00000638498.1:ENST00000640710.1:ENST00000271751.10:ENST00000639952.1:ENST00000640528.1:ENST00000638960.1:ENST00000640243.1:ENST00000640044.1:ENST00000640566.1:ENST00000640522.1:ENST00000639754.1:ENST00000640890.1:ENST00000624583.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	64	2	4.23628	5.101725	5.96717	0.045492200000000003	0.0108319	0.154539	0.0707085
chr5	35153672	35153772	2636066	0	-	0.49	(0.485,0.523]	chr5	261525	3	INTRON	INTRON	PRLR	ENSG00000113494.17	ENST00000618457.5:ENST00000508107.5:ENST00000509839.5:ENST00000504500.5:ENST00000515839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	64	2	4.23628	5.101725	5.96717	0.045492200000000003	0.0108319	0.154539	0.0707085
chr5	150028977	150029074	2564138	0	+	0.309278	(0.29,0.33]	chr5	254732	15	INTRON	INTRON	HMGXB3	ENSG00000113716.13	ENST00000613459.4:ENST00000503427.5:ENST00000502717.6:ENST00000514469.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	137	2	3.50827	5.1014	6.69453	0.0208279	1.39595e-4	0.0990379	0.00349292
chr18	13417762	13417862	7024751	0	+	0.43	(0.419,0.45]	chr18	717572	44	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000677867.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	64	2	4.29342	5.101255	5.90909	0.0526662	0.0184411	0.167062	0.0927235
chr2	196702277	196702377	983506	0	+	0.44	(0.419,0.45]	chr2	108029	7	INTRON	INTRON	CCDC150	ENSG00000144395.18	ENST00000431807.6:ENST00000389175.9:ENST00000469429.5:ENST00000494389.5:ENST00000460114.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	64	2	4.29342	5.101255	5.90909	0.0526662	0.0184411	0.167062	0.0927235
chr7	78990811	78990911	3621900	0	-	0.31	(0.29,0.33]	chr7	349212	435	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000440555.2:ENST00000636989.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	4.51301	5.101205	5.6894	0.0885563	0.00217863	0.183874	0.0243976
chr2	240625082	240625181	1075194	0	+	0.686869	(0.58,1]	chr2	116654	57	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	4	490	2	5.0857	5.10105	5.1164	1.87646e-4	1.14567e-5	0.0077267	5.66227e-4
chr1	26927064	26927164	70125	0	+	0.47	(0.45,0.485]	chr1	7863	25	INTRON	INTRON	NUDC	ENSG00000090273.14	ENST00000435827.6:ENST00000321265.10:ENST00000452707.1	protein_coding	protein_coding	protein_coding	protein_coding	2	159	2	3.94306	5.100965	6.25887	0.00748565	8.93609e-4	0.0576451	0.0131486
chr12	26613556	26613655	5399373	0	-	0.474747	(0.45,0.485]	chr12	528591	105	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	2	196	2	3.44091	5.10088	6.76085	0.0126009	1.3016e-4	0.0761905	0.00332369
chr1	2242621	2242721	4637	0	+	0.49	(0.485,0.523]	chr1	1048	96	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	4.50634	5.100555	5.69477	0.0939553	0.00203227	0.188571	0.0232814
chr14	37133083	37133183	5966651	0	-	0.49	(0.485,0.523]	chr14	584539	2577	INTRON	INTRON	SLC25A21	ENSG00000183032.12	ENST00000331299.6:ENST00000555449.5:ENST00000557611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	4.50634	5.100555	5.69477	0.0939553	0.00203227	0.188571	0.0232814
chr16	89433223	89433323	6661166	0	-	0.51	(0.485,0.523]	chr16	666753	15	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	115	2	4.29031	5.100355	5.9104	0.0119344	0.00107516	0.0741726	0.0148869
chr21	29324475	29324573	7603896	0	+	0.367347	(0.36,0.39]	chr21	794436	26	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000286800.8:ENST00000399921.5:ENST00000451655.5:ENST00000447177.5:ENST00000435072.1	protein_coding	protein_coding	protein_coding	protein_coding	1	127	2	3.52669	5.100325	6.67396	0.00914333	0.00448681	0.063297	0.0436138
chr19	1289090	1289189	7186895	0	+	0.575758	(0.523,0.58]	chr19	731132	24	INTRON	INTRON	EFNA2	ENSG00000099617.4	ENST00000215368.4	protein_coding	protein_coding	protein_coding	protein_coding	2	152	2	3.62878	5.100245	6.57171	0.00369199	0.00190634	0.0389784	0.0222954
chr9	136007930	136008029	4432151	0	-	0.535354	(0.523,0.58]	chr9	423617	15	UTR3	UTR3:EXON_MRNA	NACC2	ENSG00000148411.8	ENST00000277554.4:ENST00000371753.5	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.84569	5.100105	5.35452	0.0610722	0.00453096	0.158506	0.0400651
chr13	93892139	93892239	5624435	0	+	0.35	(0.33,0.36]	chr13	553064	612	INTRON	INTRON	GPC6	ENSG00000183098.11	ENST00000377047.9	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.57035	5.100095	5.62984	0.0945416	0.00313405	0.188571	0.0312116
chr12	132541927	132542026	5353035	0	+	0.616162	(0.58,1]	chr12	523670	136	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.6951	5.100035	5.50497	0.0521567	0.00187297	0.148503	0.0219434
chr20	62337489	62337589	7584286	0	-	0.63	(0.58,1]	chr20	792667	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LAMA5	ENSG00000130702.15	ENST00000252999.7:ENST00000474128.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.6951	5.100035	5.50497	0.0521567	0.00187297	0.148503	0.0219434
chr1	27488985	27489085	431241	0	-	0.49	(0.485,0.523]	chr1	50973	597	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	1	139	2	3.81856	5.1000250000000005	6.38149	0.012775	3.18797e-4	0.0769397	0.00634142
chr2	666629	666727	1079811	0	-	0.642857	(0.58,1]	chr2	117536	29	UTR3	UTR3:EXON_MRNA	TMEM18	ENSG00000151353.15	ENST00000281017.8	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.88945	5.099905	5.31036	0.0388928	0.00312721	0.131324	0.0311915
chr2	200361051	200361151	986503	0	+	0.51	(0.485,0.523]	chr2	108296	94	INTRON	INTRON	SPATS2L	ENSG00000196141.14	ENST00000439084.5:ENST00000409718.5:ENST00000358677.9:ENST00000409988.7:ENST00000409385.5:ENST00000439395.5:ENST00000444012.5:ENST00000451764.6:ENST00000360760.9:ENST00000423749.5:ENST00000457757.5:ENST00000471601.5:ENST00000428692.5:ENST00000453663.5:ENST00000409140.8:ENST00000459656.5:ENST00000471533.5:ENST00000409397.6:ENST00000619961.4:ENST00000409151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	114	2	4.17794	5.09987	6.0218	0.00985907	0.0014639	0.0670775	0.0185482
chr6	158628107	158628207	3064588	0	+	0.65	(0.58,1]	chr6	297759	3	SS3_PROX	SS3_PROX:INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	9	953	2	4.81727	5.099774999999999	5.38228	5.75516e-5	3.77534e-6	0.00421737	2.60568e-4
chr3	65418638	65418738	1809636	0	-	0.46	(0.45,0.485]	chr3	187193	168	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5	protein_coding	protein_coding	protein_coding	protein_coding	1	117	2	3.8525	5.099525	6.34655	0.00642055	0.00372052	0.0529785	0.0350519
chr1	226944879	226944979	355641	0	+	0.54	(0.523,0.58]	chr1	40145	39	INTRON	INTRON	COQ8A	ENSG00000163050.18	ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000489044.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	5.02927	5.09948	5.16969	0.0387762	0.0095202	0.131324	0.0650078
chr11	70537630	70537730	5059649	0	-	0.53	(0.523,0.58]	chr11	492663	343	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	52	2	5.02927	5.09948	5.16969	0.0387762	0.0095202	0.131324	0.0650078
chr17	44859649	44859681	6913155	0	-	0.53125	(0.523,0.58]	chr17	703948	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000586276.5:ENST00000592576.5:ENST00000591382.5:ENST00000590367.5:ENST00000402521.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	52	2	5.02927	5.09948	5.16969	0.0387762	0.0095202	0.131324	0.0650078
chr6	3445612	3445712	3087954	0	-	0.58	(0.523,0.58]	chr6	299812	7	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000485307.5:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.02927	5.09948	5.16969	0.0387762	0.0095202	0.131324	0.0650078
chr3	100387577	100387677	1858383	0	-	0.43	(0.419,0.45]	chr3	189485	2	INTRON	INTRON	TOMM70	ENSG00000154174.8	ENST00000284320.6	protein_coding	protein_coding	protein_coding	protein_coding	1	122	2	3.85261	5.09947	6.34633	0.00923958	0.00448861	0.0644666	0.0399092
chr3	13057514	13057614	1689714	0	-	0.62	(0.58,1]	chr3	176555	45	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.08534	5.099445	5.11355	0.0271806	0.00549379	0.112113	0.0454065
chr11	47806515	47806569	5037735	0	-	0.314815	(0.29,0.33]	chr11	487898	1	SS3_PROX	SS3_PROX:INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.58769	5.099255	5.61082	0.0806047	0.00264971	0.177452	0.027979
chr14	75039710	75039810	6008742	0	-	0.39	(0.36,0.39]	chr14	589799	4	SS5_PROX	SS5_PROX:INTRON	MLH3	ENSG00000119684.16	ENST00000380968.6:ENST00000355774.7:ENST00000553713.5:ENST00000556257.5:ENST00000556453.5:ENST00000555144.5:ENST00000555499.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	53	2	5.04893	5.099255	5.14958	0.0493212	0.0125348	0.146207	0.0765738
chr1	119216881	119216981	222378	0	+	0.3	(0.29,0.33]	chr1	24524	331	INTRON	INTRON	WARS2-AS1	ENSG00000231365.7	ENST00000667138.1:ENST00000418015.1:ENST00000413531.5:ENST00000685192.1	lncRNA	lncRNA	lncRNA	lncRNA	0	52	2	4.85285	5.099235	5.34562	0.0567079	0.00501126	0.154343	0.0429092
chr18	13444162	13444262	7025017	0	+	0.36	(0.33,0.36]	chr18	717582	3	SS5_PROX	SS5_PROX:INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000610087.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	56	2	4.65869	5.099175	5.53966	0.0251076	0.0248983	0.114418	0.107672
chr19	15646851	15646951	7215423	0	+	0.61	(0.58,1]	chr19	737146	4	SS3_PROX	SS3_PROX:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1:ENST00000609670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	58	2	4.3962	5.09905	5.8019	0.0250928	0.007984	0.114418	0.0596361
chr19	18467011	18467110	7347861	0	-	0.626263	(0.58,1]	chr19	761486	7	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	58	2	4.3962	5.09905	5.8019	0.0250928	0.007984	0.114418	0.0596361
chr19	41377512	41377601	7263512	0	+	0.640449	(0.58,1]	chr19	745099	2	SS5_PROX	SS5_PROX:INTRON	TMEM91	ENSG00000142046.15	ENST00000539627.5:ENST00000604123.5:ENST00000413014.6:ENST00000392002.7:ENST00000436170.6:ENST00000447302.6:ENST00000544232.5:ENST00000542945.5:ENST00000537354.5:ENST00000342187.9:ENST00000356385.8	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.3962	5.09905	5.8019	0.0250928	0.007984	0.114418	0.0596361
chr4	70720765	70720865	2054531	0	+	0.29	[0,0.29]	chr4	209967	151	INTRON	INTRON	RUFY3	ENSG00000018189.13	ENST00000503876.5:ENST00000417478.6	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.68855	5.098915	5.50928	0.0554735	0.00267774	0.154188	0.0282006
chr6	166333889	166333988	3301412	0	-	0.515152	(0.485,0.523]	chr6	319660	21	INTRON	INTRON	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000478705.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	233	2	3.22109	5.0987849999999995	6.97648	0.0120204	5.50755e-5	0.0743647	0.00176017
chr1	3892067	3892163	386342	0	-	0.677083	(0.58,1]	chr1	44329	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	C1orf174	ENSG00000198912.12	ENST00000474140.1:ENST00000486765.5:ENST00000361605.4:ENST00000679703.1:ENST00000680054.1:ENST00000680279.1:ENST00000681823.1:ENST00000679946.1:ENST00000680169.1:ENST00000680535.1:ENST00000679929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	4.89007	5.09877	5.30747	0.0196049	0.00872525	0.0955413	0.0612699
chr1	112705814	112705901	563028	0	-	0.586207	(0.58,1]	chr1	64621	3	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RHOC	ENSG00000155366.17	ENST00000369633.6:ENST00000369642.7:ENST00000339083.12:ENST00000285735.6:ENST00000468093.5:ENST00000369638.6:ENST00000369637.5:ENST00000369636.6:ENST00000484280.6:ENST00000369632.6:ENST00000425265.6:ENST00000436685.6:ENST00000528831.5:ENST00000484054.3:ENST00000478447.1:ENST00000527563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	51	2	4.89007	5.09877	5.30747	0.0196049	0.00872525	0.0955413	0.0612699
chr10	103837615	103837715	4758481	0	-	0.59	(0.58,1]	chr10	454819	359	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.89007	5.09877	5.30747	0.0196049	0.00872525	0.0955413	0.0612699
chr16	85229065	85229165	6515359	0	+	0.69	(0.58,1]	chr16	646377	13	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	51	2	4.89007	5.09877	5.30747	0.0196049	0.00872525	0.0955413	0.0612699
chr18	80033450	80033550	7182844	0	-	0.69	(0.58,1]	chr18	730351	2	SS5_PROX	SS5_PROX:INTRON	TXNL4A	ENSG00000141759.15	ENST00000585474.5:ENST00000592957.1:ENST00000589926.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.89007	5.09877	5.30747	0.0196049	0.00872525	0.0955413	0.0612699
chr2	27366126	27366226	734870	0	+	0.63	(0.58,1]	chr2	85958	60	INTRON	INTRON	GTF3C2-AS2	ENSG00000234072.1	ENST00000412749.1	lncRNA	lncRNA	lncRNA	lncRNA	0	51	2	4.89007	5.09877	5.30747	0.0196049	0.00872525	0.0955413	0.0612699
chr22	17103877	17103977	7683231	0	+	0.66	(0.58,1]	chr22	803623	3	SS5_PROX	SS5_PROX:INTRON	IL17RA	ENSG00000177663.15	ENST00000319363.11:ENST00000612619.2:ENST00000694951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	4.89007	5.09877	5.30747	0.0196049	0.00872525	0.0955413	0.0612699
chr4	716535	716635	1993793	0	+	0.61	(0.58,1]	chr4	203088	102	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	4.89007	5.09877	5.30747	0.0196049	0.00872525	0.0955413	0.0612699
chr7	892418	892474	3307707	0	+	0.625	(0.58,1]	chr7	320471	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SUN1:GET4	ENSG00000164828.18:ENSG00000239857.7	ENST00000457861.1:ENST00000265857.8:ENST00000407192.5:ENST00000483469.1:ENST00000464468.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	51	2	4.89007	5.09877	5.30747	0.0196049	0.00872525	0.0955413	0.0612699
chr6	2267919	2268018	2824603	0	+	0.454545	(0.45,0.485]	chr6	277256	17	INTRON	INTRON	GMDS-DT	ENSG00000250903.10	ENST00000657072.1:ENST00000529893.6:ENST00000659523.1:ENST00000659643.1:ENST00000660978.1:ENST00000691004.1:ENST00000664738.1:ENST00000532124.6:ENST00000691547.1:ENST00000663428.1:ENST00000654526.1:ENST00000670895.1:ENST00000532564.8:ENST00000685772.1:ENST00000687264.1:ENST00000660533.1:ENST00000531092.6:ENST00000524770.6:ENST00000657589.1:ENST00000607519.2:ENST00000456943.6:ENST00000525811.5:ENST00000534441.5:ENST00000533653.5:ENST00000534468.1:ENST00000530346.6:ENST00000662000.1:ENST00000665610.1:ENST00000654970.1	lncRNA	lncRNA	lncRNA	lncRNA	2	157	2	3.85068	5.098615	6.34655	0.00642055	0.00115649	0.0529785	0.0157499
chr9	14837157	14837256	4280086	0	-	0.464646	(0.45,0.485]	chr9	408973	118	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	120	2	3.67093	5.09861	6.52629	0.00582542	0.00466172	0.0473208	0.044542
chr6	8808636	8808734	2844315	0	+	0.357143	(0.33,0.36]	chr6	278395	30	INTRON	INTRON	HULC	ENSG00000285219.3	ENST00000643788.1:ENST00000643058.1:ENST00000643136.1:ENST00000646073.1:ENST00000646431.1:ENST00000644892.1:ENST00000644654.1:ENST00000644837.1:ENST00000646403.1:ENST00000645474.1:ENST00000645365.1:ENST00000642798.1:ENST00000642357.1:ENST00000645976.1:ENST00000643985.1:ENST00000642760.1:ENST00000646996.1:ENST00000645379.1:ENST00000643431.1:ENST00000647039.1:ENST00000644605.1:ENST00000645747.1:ENST00000646231.1:ENST00000643473.1:ENST00000646868.1	lncRNA	lncRNA	lncRNA	lncRNA	0	55	2	4.73368	5.09853	5.46338	0.0281891	0.0216127	0.114124	0.105648
chr15	74894009	74894104	6152684	0	+	0.442105	(0.419,0.45]	chr15	605239	3	INTRON	INTRON	MPI	ENSG00000178802.18	ENST00000569931.5:ENST00000566377.5:ENST00000352410.9:ENST00000323744.10:ENST00000535694.5:ENST00000563786.5:ENST00000562800.5:ENST00000564003.5:ENST00000563422.5:ENST00000561470.5:ENST00000562606.5:ENST00000567177.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	4.63955	5.09847	5.55739	0.0310506	0.0293406	0.125102	0.119758
chr20	20563879	20563979	7534853	0	-	0.43	(0.419,0.45]	chr20	786348	167	INTRON	INTRON	RALGAPA2	ENSG00000188559.16	ENST00000202677.12:ENST00000430436.5	protein_coding	protein_coding	protein_coding	protein_coding	1	165	2	4.23926	5.098385	5.95751	0.00827192	0.0017735	0.0610772	0.02121
chr2	164970790	164970890	941793	0	+	0.41	(0.39,0.419]	chr2	103900	78	INTRON	INTRON	ENSG00000236283	ENSG00000236283.5	ENST00000670672.1:ENST00000638199.1:ENST00000414885.2:ENST00000662281.1:ENST00000627211.2:ENST00000629991.2	lncRNA	lncRNA	lncRNA	lncRNA	0	53	2	5.04836	5.098295	5.14823	0.0501234	0.0126072	0.147892	0.0768036
chr21	29629139	29629239	7606956	0	+	0.4	(0.39,0.419]	chr21	794489	311	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000422809.5:ENST00000468059.1:ENST00000462262.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	5.04836	5.098295	5.14823	0.0501234	0.0126072	0.147892	0.0768036
chr1	245798241	245798341	698754	0	-	0.64	(0.58,1]	chr1	82352	94	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000490322.1:ENST00000493441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	130	2	4.10163	5.098065	6.0945	0.00506731	3.47472e-4	0.0465789	0.00673552
chr1	228154962	228155061	358136	0	+	0.515152	(0.485,0.523]	chr1	40434	46	INTRON	INTRON	GJC2	ENSG00000198835.4	ENST00000366714.3	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.02573	5.097925	5.17012	0.038581	0.00985879	0.131324	0.0664239
chr11	70813866	70813966	5062422	0	-	0.51	(0.485,0.523]	chr11	492713	63	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	5.02573	5.097925	5.17012	0.038581	0.00985879	0.131324	0.0664239
chr3	48073282	48073381	1765798	0	-	0.50505	(0.485,0.523]	chr3	182011	570	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.02573	5.097925	5.17012	0.038581	0.00985879	0.131324	0.0664239
chr2	54843946	54844046	801690	0	+	0.37	(0.36,0.39]	chr2	91037	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	EML6	ENSG00000214595.13	ENST00000673912.1:ENST00000356458.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	4.69932	5.09787	5.49642	0.0877431	0.00476539	0.183437	0.0414441
chr3	195241495	195241595	1982441	0	-	0.37	(0.36,0.39]	chr3	201717	143	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000429994.5:ENST00000418940.5:ENST00000494175.1:ENST00000455281.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	54	2	4.69932	5.09787	5.49642	0.0877431	0.00476539	0.183437	0.0414441
chr11	112036081	112036180	4941349	0	+	0.282828	[0,0.29]	chr11	476418	21	INTRON	INTRON	DLAT	ENSG00000150768.17	ENST00000280346.11:ENST00000679878.1:ENST00000679815.1:ENST00000679614.1:ENST00000533297.1:ENST00000681339.1:ENST00000681328.1:ENST00000681316.1:ENST00000680010.1:ENST00000527231.2:ENST00000679466.1:ENST00000679829.1:ENST00000681638.1:ENST00000679368.1:ENST00000531306.2:ENST00000393051.5:ENST00000680331.1:ENST00000680411.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	52	2	4.85009	5.097785	5.34548	0.0197148	0.0124991	0.0958249	0.0765738
chr14	68901778	68901878	5999359	0	-	0.61	(0.58,1]	chr14	588711	6	EXON_MRNA	EXON_MRNA:INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6:ENST00000683261.1:ENST00000684096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	107	2	3.85993	5.09715	6.33437	0.00276493	0.00251049	0.0332418	0.026941
chrX	9610104	9610203	7843901	0	+	0.515152	(0.485,0.523]	chrX	822423	492	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	4.75939	5.096959999999999	5.43453	0.0258944	0.0172254	0.109555	0.0923809
chr3	82340655	82340755	1509791	0	+	0.4	(0.39,0.419]	chr3	161017	1330	INTRON	INTRON	LINC02008	ENSG00000239440.6	ENST00000470263.5:ENST00000494340.2:ENST00000666519.1:ENST00000668833.1:ENST00000653255.1:ENST00000666096.1	lncRNA	lncRNA	lncRNA	lncRNA	0	54	2	4.69798	5.096920000000001	5.49586	0.088901	0.00479873	0.183874	0.0416285
chr9	21885753	21885853	4135221	0	+	0.41	(0.39,0.419]	chr9	393110	188	INTRON	INTRON	MTAP	ENSG00000099810.21	ENST00000580900.5:ENST00000577563.1	protein_coding	protein_coding	protein_coding	protein_coding	1	120	2	4.16761	5.096895	6.02618	0.0136549	0.00194652	0.0798074	0.0225704
chr5	10742809	10742908	2612465	0	-	0.40404	(0.39,0.419]	chr5	260258	82	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5:ENST00000510546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	147	2	3.80298	5.096805	6.39063	0.0159069	5.25726e-4	0.0860271	0.00903907
chr13	112971948	112972047	5655340	0	+	0.545455	(0.523,0.58]	chr13	555120	21	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	4.43597	5.096695	5.75742	0.0313935	0.0155135	0.127822	0.0849828
chr19	8250870	8250956	7200393	0	+	0.569767	(0.523,0.58]	chr19	734199	5	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1:ENST00000557925.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	59	2	4.43597	5.096695	5.75742	0.0313935	0.0155135	0.127822	0.0849828
chr8	30418254	30418354	3788502	0	+	0.54	(0.523,0.58]	chr8	364885	199	INTRON	INTRON	RBPMS	ENSG00000157110.16	ENST00000320203.8:ENST00000339877.8:ENST00000287771.9:ENST00000397323.9:ENST00000517860.5:ENST00000520161.5:ENST00000523115.5:ENST00000519647.5:ENST00000521816.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	4.43597	5.096695	5.75742	0.0313935	0.0155135	0.127822	0.0849828
chr6	144663663	144663762	3023705	0	+	0.464646	(0.45,0.485]	chr6	295445	30	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000367526.8:ENST00000367525.3	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.00859	5.0964849999999995	5.18438	0.052901	0.00773818	0.14912	0.0568726
chr14	95407862	95407962	6048855	0	-	0.43	(0.419,0.45]	chr14	593438	7	UTR3	UTR3:EXON_MRNA	SYNE3	ENSG00000176438.13	ENST00000682763.1:ENST00000557275.5	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.98767	5.096375	5.20508	0.0669167	0.00979452	0.16272	0.0664239
chr3	65920065	65920165	1814679	0	-	0.44	(0.419,0.45]	chr3	187310	125	INTRON	INTRON	MAGI1:MAGI1-IT1	ENSG00000151276.24:ENSG00000272610.1	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5:ENST00000460754.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	0	53	2	4.98767	5.096375	5.20508	0.0669167	0.00979452	0.16272	0.0664239
chr9	83691541	83691641	4326268	0	-	0.42	(0.419,0.45]	chr9	413210	50	INTRON	INTRON	UBQLN1	ENSG00000135018.14	ENST00000376395.9:ENST00000257468.11:ENST00000529923.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.98767	5.096375	5.20508	0.0669167	0.00979452	0.16272	0.0664239
chr2	174161592	174161692	1320070	0	-	0.44	(0.419,0.45]	chr2	141020	192	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	5.04043	5.096285	5.15214	0.0625897	0.0109324	0.160305	0.0706366
chr6	136827456	136827554	3009480	0	+	0.438776	(0.419,0.45]	chr6	294439	6	INTRON	INTRON	PEX7	ENSG00000112357.14	ENST00000541292.6:ENST00000367756.8:ENST00000318471.5:ENST00000678593.1:ENST00000678557.1:ENST00000679286.1:ENST00000678002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	5.04043	5.096285	5.15214	0.0625897	0.0109324	0.160305	0.0706366
chr1	12585939	12586038	402462	0	-	0.525253	(0.523,0.58]	chr1	46222	49	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	304	2	5.01184	5.09626	5.18068	0.00132514	7.52928e-5	0.0222181	0.00222234
chr8	102351385	102351484	4031571	0	-	0.353535	(0.33,0.36]	chr8	385192	39	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.77355	5.096175000000001	5.4188	0.0735809	0.00513015	0.17026	0.0435186
chr6	158023378	158023478	3059726	0	+	0.65	(0.58,1]	chr6	297373	52	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	1	108	2	3.79235	5.096	6.39965	0.00302484	0.00241374	0.0309229	0.0305643
chr9	34196868	34196967	4140904	0	+	0.353535	(0.33,0.36]	chr9	393819	51	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.57958	5.095845000000001	5.61211	0.0288057	0.022456	0.123764	0.102751
chr19	40257554	40257653	7379541	0	-	0.464646	(0.45,0.485]	chr19	765664	1	INTRON	INTRON	AKT2	ENSG00000105221.18	ENST00000392038.7:ENST00000424901.5:ENST00000391844.8:ENST00000584288.5:ENST00000311278.10:ENST00000579047.5:ENST00000492463.6:ENST00000537834.5:ENST00000487537.3:ENST00000441941.6:ENST00000672879.1:ENST00000486368.6:ENST00000596634.5:ENST00000452077.5:ENST00000392037.5:ENST00000416362.5:ENST00000578123.5:ENST00000672890.1:ENST00000423127.5:ENST00000358335.9:ENST00000456441.5:ENST00000583859.5:ENST00000416994.6:ENST00000580747.5:ENST00000427375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	117	2	3.82378	5.095725	6.36767	0.00618594	0.0039984	0.0519442	0.0370532
chr7	105376250	105376350	3667861	0	-	0.48	(0.45,0.485]	chr7	353743	693	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	117	2	3.82378	5.095725	6.36767	0.00618594	0.0039984	0.0519442	0.0370532
chr1	212381620	212381719	656558	0	-	0.545455	(0.523,0.58]	chr1	77439	12	INTRON	INTRON	PACC1	ENSG00000065600.13	ENST00000261455.9:ENST00000535273.2:ENST00000467822.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	113	2	4.11732	5.0956600000000005	6.074	0.00906277	0.00168626	0.0637469	0.0204375
chr17	44426786	44426886	6912083	0	-	0.46	(0.45,0.485]	chr17	703814	19	INTRON	INTRON	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000335500.8:ENST00000635257.1:ENST00000587228.5:ENST00000585614.1:ENST00000590041.5:ENST00000586265.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	52	2	5.06138	5.0953800000000005	5.12938	0.0492008	0.00873194	0.146142	0.0612699
chr9	96923217	96923316	4347019	0	-	0.424242	(0.419,0.45]	chr9	415343	40	INTRON	INTRON	MFSD14C	ENSG00000196312.15	ENST00000647176.1:ENST00000637409.1:ENST00000506067.1:ENST00000645073.1:ENST00000637076.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	55	2	4.78575	5.09526	5.40477	0.0385125	0.0224633	0.131324	0.108193
chr17	57983693	57983793	6931881	0	-	0.34	(0.33,0.36]	chr17	706419	3	SS3_PROX	SS3_PROX:INTRON	VEZF1	ENSG00000136451.9	ENST00000581208.2:ENST00000584396.5:ENST00000583932.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.64131	5.0952	5.54909	0.0867669	0.00379428	0.182221	0.0355124
chr21	45498260	45498359	7631287	0	+	0.727273	(0.58,1]	chr21	797812	2	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.29454	5.094975	5.89541	0.0305531	0.0066708	0.126768	0.0540577
chr2	111240496	111240594	1251027	0	-	0.469388	(0.45,0.485]	chr2	134822	1	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000673962.1:ENST00000674132.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000662889.1:ENST00000665096.1:ENST00000674092.1:ENST00000673958.1:ENST00000673770.1:ENST00000673961.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000656303.1:ENST00000666367.1:ENST00000666652.1:ENST00000669050.1:ENST00000667218.1:ENST00000656067.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000673700.1:ENST00000443467.6:ENST00000451884.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000655573.1	lncRNA	lncRNA	lncRNA	lncRNA	2	155	2	3.68222	5.094805	6.50739	0.00482293	0.00183454	0.0453395	0.0216929
chr13	112744158	112744258	5653083	0	+	0.54	(0.523,0.58]	chr13	554906	266	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000466946.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	113	2	4.14168	5.0948	6.04792	0.00948306	0.00157839	0.0656057	0.0195793
chr6	36108447	36108546	2905121	0	+	0.474747	(0.45,0.485]	chr6	284964	1	UTR3	UTR3:EXON_MRNA	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8	protein_coding	protein_coding	protein_coding	protein_coding	1	116	2	3.90828	5.09479	6.2813	0.00719875	0.00323103	0.056408	0.0319521
chr17	17722127	17722227	6689256	0	+	0.59	(0.58,1]	chr17	671338	372	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.82753	5.094530000000001	5.36153	0.0427798	0.00273899	0.13762	0.028553
chr17	61395058	61395148	6939749	0	-	0.6	(0.58,1]	chr17	707559	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TBX2-AS1	ENSG00000267280.6	ENST00000591313.6:ENST00000590421.1:ENST00000592009.1:ENST00000589814.5:ENST00000586706.5	lncRNA	lncRNA	lncRNA	lncRNA	0	50	2	4.82753	5.094530000000001	5.36153	0.0427798	0.00273899	0.13762	0.028553
chr19	33505468	33505567	7365908	0	-	0.656566	(0.58,1]	chr19	763467	41	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000651646.1:ENST00000590408.1:ENST00000593163.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	50	2	4.82753	5.094530000000001	5.36153	0.0427798	0.00273899	0.13762	0.028553
chr1	59525933	59526033	140396	0	+	0.42	(0.419,0.45]	chr1	16851	131	INTRON	INTRON	FGGY	ENSG00000172456.18	ENST00000634606.1:ENST00000474476.5:ENST00000371218.8:ENST00000495718.5:ENST00000430447.5:ENST00000634364.1:ENST00000303721.12:ENST00000635297.1:ENST00000634399.1:ENST00000424725.2:ENST00000635156.1:ENST00000371212.5:ENST00000475949.5:ENST00000485720.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	53	2	4.9329	5.094525	5.25615	0.0716557	0.00879729	0.168159	0.0615125
chr10	31458337	31458437	4473146	0	+	0.42	(0.419,0.45]	chr10	427907	683	INTRON	INTRON	ZEB1	ENSG00000148516.23	ENST00000488625.6:ENST00000560196.5:ENST00000542879.5:ENST00000561304.5:ENST00000320985.14:ENST00000560721.6:ENST00000559858.5:ENST00000558440.5:ENST00000437844.6:ENST00000424869.6:ENST00000542815.7:ENST00000558863.5:ENST00000561212.5:ENST00000558655.5:ENST00000561061.5:ENST00000559496.5:ENST00000446923.7:ENST00000557827.5:ENST00000606671.5:ENST00000606161.1:ENST00000493835.5:ENST00000560909.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	53	2	4.9329	5.094525	5.25615	0.0716557	0.00879729	0.168159	0.0615125
chr16	4907296	4907395	6545141	0	-	0.434343	(0.419,0.45]	chr16	651311	29	INTRON	INTRON	PPL	ENSG00000118898.16	ENST00000345988.7:ENST00000590782.6:ENST00000592772.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.9329	5.094525	5.25615	0.0716557	0.00879729	0.168159	0.0615125
chr6	16517736	16517836	3102014	0	-	0.45	(0.419,0.45]	chr6	300855	313	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	4.9329	5.094525	5.25615	0.0716557	0.00879729	0.168159	0.0615125
chr7	98116472	98116572	3423499	0	+	0.42	(0.419,0.45]	chr7	330518	88	INTRON	INTRON	LMTK2	ENSG00000164715.6	ENST00000297293.6	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.9329	5.094525	5.25615	0.0716557	0.00879729	0.168159	0.0615125
chrX	133788543	133788643	8114052	0	-	0.44	(0.419,0.45]	chrX	845523	340	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	53	2	4.9329	5.094525	5.25615	0.0716557	0.00879729	0.168159	0.0615125
chr12	31535331	31535431	5407639	0	-	0.53	(0.523,0.58]	chr12	529605	291	INTRON	INTRON	DENND5B	ENSG00000170456.16	ENST00000389082.10:ENST00000536562.5:ENST00000354285.8:ENST00000545147.5:ENST00000544698.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	114	2	3.87732	5.0945149999999995	6.31171	0.00594629	0.00318505	0.0506158	0.0316631
chr16	31493215	31493298	6580391	0	-	0.46988	(0.45,0.485]	chr16	657882	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RUSF1	ENSG00000140688.17	ENST00000570164.5:ENST00000327237.7:ENST00000568491.1:ENST00000430477.6:ENST00000567994.5:ENST00000567673.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	218	2	2.87253	5.094315	7.3161	0.00605627	0.0010596	0.04865	0.0195612
chr14	23516113	23516213	5757115	0	+	0.42	(0.419,0.45]	chr14	564963	13	INTRON	INTRON	ZFHX2-AS1	ENSG00000157306.14	ENST00000556354.5:ENST00000553985.1:ENST00000554403.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	53	2	5.09133	5.094255	5.09718	0.0586308	0.012235	0.155565	0.0757339
chr17	50554804	50554877	6752717	0	+	0.547945	(0.523,0.58]	chr17	681013	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SPATA20	ENSG00000006282.21	ENST00000504334.5:ENST00000619622.4:ENST00000356488.8:ENST00000503127.5:ENST00000006658.11:ENST00000511937.5:ENST00000503063.5:ENST00000634597.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	53	2	4.65157	5.094110000000001	5.53665	0.0787008	0.00291382	0.175203	0.0298557
chr16	78813543	78813643	6502554	0	+	0.47	(0.45,0.485]	chr16	645717	332	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	124	2	4.6094	5.0939700000000006	5.57854	0.0230065	4.87276e-4	0.102982	0.00859082
chr7	6703765	6703864	3542751	0	-	0.464646	(0.45,0.485]	chr7	342318	30	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	1	123	2	3.53579	5.093935	6.65208	0.00804225	0.00371059	0.0582806	0.039096
chr1	31906614	31906711	437224	0	-	0.371134	(0.36,0.39]	chr1	52047	3	UTR3	UTR3:EXON_MRNA	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000602725.5	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.82572	5.093915	5.36211	0.0751666	0.00643924	0.172839	0.0503748
chr15	34554953	34555052	6218168	0	-	0.606061	(0.58,1]	chr15	612407	6	INTRON	INTRON	GOLGA8B	ENSG00000215252.12	ENST00000683415.1:ENST00000569100.5:ENST00000484716.5:ENST00000564575.5:ENST00000566091.5:ENST00000566258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	50	2	5.02314	5.093835	5.16453	0.0249802	0.00638322	0.10758	0.0501889
chr15	84766511	84766611	6174162	0	+	0.59	(0.58,1]	chr15	607320	13	INTRON	INTRON	ZNF592	ENSG00000166716.10	ENST00000560079.7	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.02314	5.093835	5.16453	0.0249802	0.00638322	0.10758	0.0501889
chr18	76401782	76401882	7179137	0	-	0.69	(0.58,1]	chr18	730080	211	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.02314	5.093835	5.16453	0.0249802	0.00638322	0.10758	0.0501889
chr5	78636145	78636244	2703250	0	-	0.464646	(0.45,0.485]	chr5	266664	34	INTRON	INTRON	LHFPL2	ENSG00000145685.14	ENST00000380345.7:ENST00000503686.5:ENST00000512759.5:ENST00000515349.1:ENST00000514587.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	4.7111	5.09379	5.47648	0.0781398	0.0039628	0.175203	0.0368027
chr13	50536257	50536357	5597987	0	+	0.42	(0.419,0.45]	chr13	551685	25	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1:ENST00000484869.6	lncRNA	lncRNA	lncRNA	lncRNA	2	164	2	3.39352	5.093385	6.79325	0.00473168	0.00437084	0.0428189	0.0413976
chrX	132484954	132485054	8111458	0	-	0.32	(0.29,0.33]	chrX	845460	443	INTRON	INTRON	MBNL3	ENSG00000076770.15	ENST00000370853.8:ENST00000370844.5:ENST00000436215.5:ENST00000421707.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.65868	5.0932	5.52772	0.0735584	0.00324812	0.17026	0.0319647
chr10	46806113	46806212	4484744	0	+	0.535354	(0.523,0.58]	chr10	428921	38	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000688259.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	52	2	4.78384	5.093045	5.40225	0.0663135	0.00404292	0.162385	0.0371291
chr13	24892442	24892542	5672234	0	-	0.54	(0.523,0.58]	chr13	557126	4	SS5_PROX	SS5_PROX:INTRON	CENPJ	ENSG00000151849.16	ENST00000381884.9:ENST00000616936.4:ENST00000545981.6:ENST00000418179.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.78384	5.093045	5.40225	0.0663135	0.00404292	0.162385	0.0371291
chr7	55539825	55539925	3592310	0	-	0.41	(0.39,0.419]	chr7	346466	3	INTRON	INTRON	VOPP1	ENSG00000154978.13	ENST00000462326.5:ENST00000285279.10:ENST00000428648.5:ENST00000418904.5:ENST00000454227.5:ENST00000427700.1:ENST00000452832.5:ENST00000453112.5:ENST00000471168.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	4.82439	5.09297	5.36155	0.0762206	0.00648185	0.174484	0.0503748
chr1	160997880	160997979	606140	0	-	0.464646	(0.45,0.485]	chr1	72014	28	UTR3	UTR3:EXON_MRNA	F11R:ENSG00000270149	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	128	2	3.38668	5.0929400000000005	6.7992	0.0113463	0.00282996	0.0719708	0.033746
chr16	85388936	85389036	6516960	0	+	0.38	(0.36,0.39]	chr16	646391	296	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	120	2	3.82995	5.092755	6.35556	0.0077647	0.00449477	0.0589564	0.0399512
chr9	93661540	93661636	4184513	0	+	0.458333	(0.45,0.485]	chr9	397767	6	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.89685	5.092655	5.28846	0.0614781	0.00612862	0.158506	0.0489549
chr16	1459503	1459595	6532767	0	-	0.684783	(0.58,1]	chr16	648973	2	SS3_PROX	SS3_PROX:INTRON	CLCN7	ENSG00000103249.18	ENST00000382745.9:ENST00000448525.5:ENST00000262318.12:ENST00000569851.6	protein_coding	protein_coding	protein_coding	protein_coding	1	109	2	4.55404	5.09261	5.63118	0.0109983	3.19972e-4	0.0708586	0.00635576
chr11	71798867	71798963	4888248	0	+	0.489583	(0.485,0.523]	chr11	471598	21	INTRON	INTRON	FAM86C1P	ENSG00000158483.18	ENST00000687021.1:ENST00000691262.1:ENST00000346333.11:ENST00000688029.1:ENST00000686315.1:ENST00000689468.1:ENST00000359244.9:ENST00000426628.7:ENST00000689903.1:ENST00000686373.1:ENST00000685880.1:ENST00000688077.1:ENST00000687306.1:ENST00000686911.1:ENST00000693723.1:ENST00000528685.2:ENST00000692655.1:ENST00000510443.6:ENST00000675931.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	53	2	4.65198	5.09253	5.53308	0.0783889	0.00304306	0.175203	0.0306636
chr7	128076781	128076880	3472502	0	+	0.494949	(0.485,0.523]	chr7	335450	17	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000470723.5:ENST00000470463.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	114	2	3.8948	5.09243	6.29006	0.00613935	0.00310434	0.0517628	0.0311614
chr3	149540266	149540348	1940017	0	-	0.414634	(0.39,0.419]	chr3	197470	1	INTRON	INTRON	WWTR1	ENSG00000018408.15	ENST00000465804.5:ENST00000360632.8:ENST00000467467.5:ENST00000471586.5:ENST00000472417.1:ENST00000485244.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	53	2	4.98886	5.092325	5.19579	0.0469937	0.0142222	0.143232	0.0833845
chr1	820912	821011	379719	0	-	0.545455	(0.523,0.58]	chr1	42663	424	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000634337.2:ENST00000635509.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	52	2	4.96714	5.092205	5.21727	0.0361597	0.0108948	0.127853	0.0706366
chr11	70537430	70537530	5059647	0	-	0.58	(0.523,0.58]	chr11	492663	341	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	52	2	4.96714	5.092205	5.21727	0.0361597	0.0108948	0.127853	0.0706366
chr8	143516985	143517085	4096763	0	-	0.54	(0.523,0.58]	chr8	389278	87	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.96714	5.092205	5.21727	0.0361597	0.0108948	0.127853	0.0706366
chr3	23845585	23845685	1431188	0	+	0.36	(0.33,0.36]	chr3	152792	337	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	117	2	4.04541	5.092195	6.13898	0.00953039	0.00246593	0.0658012	0.0266039
chr10	96142655	96142754	4560214	0	+	0.30303	(0.29,0.33]	chr10	435112	70	INTRON	INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	4.79099	5.092165	5.39334	0.061706	0.00448059	0.158854	0.0398484
chr20	33017680	33017758	7457471	0	+	0.5	(0.485,0.523]	chr20	776395	2	INTRON	INTRON	BPIFB2	ENSG00000078898.7	ENST00000170150.4	protein_coding	protein_coding	protein_coding	protein_coding	4	481	2	4.6463	5.0920000000000005	5.5377	4.48622e-4	4.68682e-5	0.0121771	0.00157191
chr4	184473868	184473968	2367030	0	-	0.56	(0.523,0.58]	chr4	236387	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	IRF2	ENSG00000168310.12	ENST00000696840.1:ENST00000393593.8:ENST00000696846.1:ENST00000696845.1:ENST00000696844.1:ENST00000502750.2:ENST00000696843.1:ENST00000696842.1:ENST00000696852.1:ENST00000696853.1:ENST00000696851.1:ENST00000696850.1:ENST00000696849.1:ENST00000510814.6:ENST00000505067.6:ENST00000504340.2:ENST00000507523.5:ENST00000512020.5:ENST00000506230.5:ENST00000509274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	113	2	3.96183	5.09155	6.22127	0.00699217	0.00255427	0.0555241	0.0273114
chr17	55306644	55306744	6757530	0	+	0.4	(0.39,0.419]	chr17	681718	173	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	119	2	4.05528	5.091514999999999	6.12775	0.0115883	0.00258839	0.0731017	0.027634
chr10	102650773	102650872	4576532	0	+	0.626263	(0.58,1]	chr10	437284	11	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1:ENST00000487927.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	107	2	3.82654	5.0915	6.35646	0.00275362	0.00264106	0.0325876	0.0285628
chr17	4840233	4840332	6671955	0	+	0.494949	(0.485,0.523]	chr17	668609	62	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	4.78426	5.091475	5.39869	0.0660335	0.00421243	0.162385	0.0380601
chr22	28027123	28027222	7775285	0	-	0.50505	(0.485,0.523]	chr22	815662	124	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7:ENST00000612946.4	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.78426	5.091475	5.39869	0.0660335	0.00421243	0.162385	0.0380601
chr5	116165565	116165665	2510625	0	+	0.51	(0.485,0.523]	chr5	249634	310	INTRON	INTRON	COMMD10	ENSG00000145781.9	ENST00000507356.5:ENST00000274458.9:ENST00000632434.1:ENST00000515539.5:ENST00000506589.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.78426	5.091475	5.39869	0.0660335	0.00421243	0.162385	0.0380601
chr20	62959041	62959137	7508287	0	+	0.65625	(0.58,1]	chr20	783180	11	INTRON	INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	551	2	3.92888	5.091455	6.25403	0.00108464	9.22387e-7	0.0198426	9.90613e-5
chr3	152429730	152429829	1600002	0	+	0.323232	(0.29,0.33]	chr3	169005	143	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5:ENST00000478535.1:ENST00000460166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	4.95831	5.091395	5.22448	0.0331252	0.0118616	0.123313	0.0746945
chr6	36066805	36066904	2904689	0	+	0.323232	(0.29,0.33]	chr6	284907	71	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000622903.4:ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5:ENST00000472333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	4.95831	5.091395	5.22448	0.0331252	0.0118616	0.123313	0.0746945
chrX	135306323	135306423	8116918	0	-	0.32	(0.29,0.33]	chrX	845635	99	INTRON	INTRON	ZNF75D	ENSG00000186376.15	ENST00000494295.1:ENST00000370766.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	4.95831	5.091395	5.22448	0.0331252	0.0118616	0.123313	0.0746945
chr13	113332073	113332172	5753251	0	-	0.373737	(0.36,0.39]	chr13	564094	56	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	1	121	2	3.74547	5.091255	6.43704	0.00676148	0.00550271	0.0544904	0.0454065
chr10	79159054	79159154	4532947	0	+	0.63	(0.58,1]	chr10	432432	189	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.66416	5.091145	5.51813	0.0144381	0.013519	0.0833845	0.0792526
chr15	78927195	78927281	6336938	0	-	0.604651	(0.58,1]	chr15	624691	4	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTSH	ENSG00000103811.18	ENST00000677011.1:ENST00000220166.10:ENST00000676639.1:ENST00000676510.1:ENST00000678727.1:ENST00000679334.1:ENST00000679017.1:ENST00000677810.1:ENST00000676763.1:ENST00000678886.1:ENST00000677921.1:ENST00000676596.1:ENST00000678114.1:ENST00000678487.1:ENST00000649928.2:ENST00000527715.6:ENST00000530010.6:ENST00000676671.1:ENST00000534533.6:ENST00000678283.1:ENST00000678841.1:ENST00000679125.1:ENST00000677316.1:ENST00000678031.1:ENST00000678644.1:ENST00000676808.1:ENST00000677207.1:ENST00000676486.1:ENST00000677238.1:ENST00000678281.1:ENST00000678799.1:ENST00000525807.6:ENST00000676588.1:ENST00000528191.6:ENST00000678817.1:ENST00000676880.1:ENST00000528741.6:ENST00000678415.1:ENST00000679172.1:ENST00000533777.5:ENST00000534237.6:ENST00000677448.1:ENST00000677534.1:ENST00000677367.1:ENST00000678397.1:ENST00000679047.1:ENST00000676865.1:ENST00000677102.1:ENST00000677874.1:ENST00000677254.1:ENST00000677936.1:ENST00000678940.1:ENST00000677789.1:ENST00000615999.5:ENST00000677049.1:ENST00000678033.1:ENST00000679211.1:ENST00000676850.1:ENST00000534268.6:ENST00000529861.6:ENST00000676738.1:ENST00000527138.6:ENST00000677320.1:ENST00000529612.6:ENST00000676668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	53	2	4.66416	5.091145	5.51813	0.0144381	0.013519	0.0833845	0.0792526
chr9	129497955	129498051	4250755	0	+	0.541667	(0.523,0.58]	chr9	404722	5	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	114	2	4.30157	5.091145	5.88072	0.0126258	0.00101591	0.0761905	0.0143256
chr9	134352209	134352309	4260945	0	+	0.67	(0.58,1]	chr9	406311	252	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	53	2	4.66416	5.091145	5.51813	0.0144381	0.013519	0.0833845	0.0792526
chr10	48040636	48040735	4680772	0	-	0.525253	(0.523,0.58]	chr10	446508	12	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	5	658	2	5.002	5.09102	5.18004	3.72156e-4	1.41354e-5	0.011082	6.55245e-4
chr6	667846	667946	3078845	0	-	0.46	(0.45,0.485]	chr6	299429	102	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9:ENST00000443083.5	protein_coding	protein_coding	protein_coding	protein_coding	1	145	2	3.9901	5.0908	6.1915	0.010198	6.44145e-4	0.0684871	0.0104271
chr10	59813960	59814055	4693910	0	-	0.421053	(0.419,0.45]	chr10	447411	8	INTRON	INTRON	CCDC6	ENSG00000108091.11	ENST00000263102.7	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.87598	5.090730000000001	5.30548	0.0768574	0.00792071	0.174882	0.057762
chr12	93385462	93385562	5290342	0	+	0.42	(0.419,0.45]	chr12	514886	3	SS5_PROX	SS5_PROX:INTRON	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5:ENST00000550056.5:ENST00000547014.5:ENST00000548662.5:ENST00000546925.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.87598	5.090730000000001	5.30548	0.0768574	0.00792071	0.174882	0.057762
chr18	49046400	49046500	7158125	0	-	0.44	(0.419,0.45]	chr18	727833	18	INTRON	INTRON	DYM	ENSG00000141627.14	ENST00000675505.1:ENST00000269445.10:ENST00000442713.6:ENST00000577734.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.87598	5.090730000000001	5.30548	0.0768574	0.00792071	0.174882	0.057762
chr14	54678520	54678620	5820560	0	+	0.53	(0.523,0.58]	chr14	569059	93	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1:ENST00000555091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	199	2	3.68203	5.090635000000001	6.49924	0.00748457	2.16101e-4	0.0576451	0.00477041
chr1	235596210	235596310	692287	0	-	0.59	(0.58,1]	chr1	81485	3	INTRON	INTRON	GNG4	ENSG00000168243.11	ENST00000391854.7:ENST00000450593.5:ENST00000366598.8	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.74346	5.09049	5.43752	0.0156166	0.0121457	0.0849828	0.0754623
chr3	65519278	65519378	1810657	0	-	0.45	(0.419,0.45]	chr3	187251	253	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5:ENST00000476403.5:ENST00000496734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	53	2	5.04004	5.09027	5.1405	0.0550015	0.0137308	0.153337	0.0814223
chr12	48938457	48938555	5423621	0	-	0.489796	(0.485,0.523]	chr12	531642	29	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARF3	ENSG00000134287.10	ENST00000256682.9:ENST00000485410.5:ENST00000447318.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	155	2	3.95873	5.090215000000001	6.2217	0.00693912	7.71874e-4	0.0553898	0.0118365
chr2	216000956	216001056	1369293	0	-	0.52	(0.485,0.523]	chr2	145845	41	INTRON	INTRON	MREG:PECR	ENSG00000118242.16:ENSG00000115425.14	ENST00000263268.11:ENST00000620139.4:ENST00000439791.5:ENST00000424992.5:ENST00000420348.1:ENST00000442122.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	57	2	4.52142	5.089665	5.65791	0.0273555	0.0181582	0.119337	0.0921579
chr3	129596086	129596185	1912191	0	-	0.494949	(0.485,0.523]	chr3	194387	62	INTRON	INTRON	PLXND1	ENSG00000004399.13	ENST00000324093.9	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.52142	5.089665	5.65791	0.0273555	0.0181582	0.119337	0.0921579
chr6	24207600	24207700	3108818	0	-	0.43	(0.419,0.45]	chr6	301412	21	INTRON	INTRON	DCDC2	ENSG00000146038.12	ENST00000378454.8	protein_coding	protein_coding	protein_coding	protein_coding	0	69	2	4.08324	5.08921	6.09518	0.0727147	0.0138177	0.199502	0.0803169
chr22	42986335	42986435	7823996	0	-	0.48	(0.45,0.485]	chr22	820626	266	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	116	2	4.24796	5.08915	5.93034	0.0130794	0.00132616	0.0782396	0.0173248
chr15	85038111	85038211	6175155	0	+	0.37	(0.36,0.39]	chr15	607383	554	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	4.64834	5.089105	5.52987	0.0287883	0.0272056	0.119337	0.115991
chr9	2084296	2084396	4105980	0	+	0.35	(0.33,0.36]	chr9	391056	1	SS5_PROX	SS5_PROX:INTRON	SMARCA2	ENSG00000080503.24	ENST00000357248.8:ENST00000450198.6:ENST00000349721.8:ENST00000382194.6:ENST00000634760.1:ENST00000382203.5:ENST00000635739.1:ENST00000635185.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	52	2	5.00642	5.08897	5.17152	0.0542065	0.00887848	0.151733	0.0618231
chr14	103499865	103499962	5923285	0	+	0.597938	(0.58,1]	chr14	579479	11	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000676745.1:ENST00000554627.5:ENST00000679299.1:ENST00000678661.1:ENST00000677352.1:ENST00000676944.1:ENST00000677023.1:ENST00000678213.1:ENST00000678373.1:ENST00000679005.1:ENST00000556463.5:ENST00000558787.1:ENST00000555235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	204	2	3.03415	5.088875	7.1436	0.0120403	1.16294e-5	0.0744621	5.71933e-4
chr2	239291070	239291169	1391619	0	-	0.464646	(0.45,0.485]	chr2	148740	395	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	115	2	3.9881	5.088760000000001	6.18942	0.00844217	0.0026335	0.0617623	0.0278798
chr8	38456057	38456157	3968184	0	-	0.51	(0.485,0.523]	chr8	379315	122	INTRON	INTRON	FGFR1	ENSG00000077782.22	ENST00000649678.1:ENST00000397091.9:ENST00000619564.3:ENST00000447712.7:ENST00000341462.9:ENST00000532791.5:ENST00000674380.1:ENST00000674189.1:ENST00000683765.1:ENST00000425967.8:ENST00000683948.1:ENST00000397113.6:ENST00000356207.9:ENST00000335922.9:ENST00000683815.1:ENST00000684654.1:ENST00000326324.10:ENST00000674474.1:ENST00000397103.5:ENST00000397108.8:ENST00000487647.5:ENST00000530701.1:ENST00000470826.5:ENST00000683276.1:ENST00000683795.1:ENST00000496296.5:ENST00000527203.5:ENST00000533668.5:ENST00000525001.5:ENST00000526742.5:ENST00000529552.5:ENST00000484370.5:ENST00000530568.5:ENST00000434187.5:ENST00000397090.4:ENST00000413133.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	201	2	4.78299	5.0883400000000005	5.39369	0.0275819	6.4158e-5	0.112782	0.00196733
chr5	54246805	54246905	2657761	0	-	0.41	(0.39,0.419]	chr5	263534	745	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	56	2	4.64779	5.08815	5.52851	0.029339	0.0273358	0.119337	0.116079
chr4	105443797	105443896	2298197	0	-	0.454545	(0.45,0.485]	chr4	231299	54	INTRON	INTRON	PPA2	ENSG00000138777.20	ENST00000341695.10:ENST00000348706.9:ENST00000509031.5:ENST00000351450.10:ENST00000354147.7:ENST00000432483.6:ENST00000515567.5:ENST00000503171.5:ENST00000510015.5:ENST00000509426.5:ENST00000508518.5:ENST00000514209.5:ENST00000506815.5:ENST00000457404.6:ENST00000502833.5:ENST00000504028.5:ENST00000502596.5:ENST00000513649.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	52	2	4.83755	5.087680000000001	5.33781	0.06646	0.0054758	0.162385	0.0454065
chr7	127978068	127978168	3471508	0	+	0.46	(0.45,0.485]	chr7	335423	285	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	4.83755	5.087680000000001	5.33781	0.06646	0.0054758	0.162385	0.0454065
chr2	36364817	36364917	757724	0	+	0.22	[0,0.29]	chr2	87956	78	INTRON	INTRON	CRIM1	ENSG00000150938.10	ENST00000280527.7:ENST00000426856.1:ENST00000428774.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.70363	5.087675000000001	5.47172	0.0169854	0.0158465	0.0923809	0.0859576
chr16	3837920	3838020	6539514	0	-	0.48	(0.45,0.485]	chr16	650420	245	INTRON	INTRON	CREBBP	ENSG00000005339.15	ENST00000262367.10:ENST00000382070.7:ENST00000636895.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	115	2	4.13561	5.08761	6.03961	0.0108974	0.0017907	0.0707085	0.0213868
chr8	22560990	22561050	3771903	0	+	0.55	(0.523,0.58]	chr8	362928	2	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	SORBS3	ENSG00000120896.14	ENST00000240123.12:ENST00000517500.5:ENST00000517535.5:ENST00000523402.5:ENST00000520563.3:ENST00000524057.3:ENST00000518512.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	117	2	3.65844	5.08709	6.51574	0.00554418	0.00409625	0.0456911	0.0413652
chr6	15433331	15433431	2858382	0	+	0.47	(0.45,0.485]	chr6	279190	226	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.01267	5.08708	5.16149	0.0427653	0.011221	0.13762	0.071709
chr6	32374215	32374315	2897056	0	+	0.47	(0.45,0.485]	chr6	283611	80	INTRON	INTRON	TSBP1-AS1	ENSG00000225914.4	ENST00000646628.1:ENST00000653922.1:ENST00000690046.1:ENST00000653523.2:ENST00000685706.1:ENST00000653107.1:ENST00000645134.1:ENST00000647036.1:ENST00000644884.2:ENST00000645167.1:ENST00000646550.1:ENST00000642577.1	lncRNA	lncRNA	lncRNA	lncRNA	0	52	2	5.01267	5.08708	5.16149	0.0427653	0.011221	0.13762	0.071709
chr6	36064916	36065016	2904670	0	+	0.47	(0.45,0.485]	chr6	284907	52	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000622903.4:ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5:ENST00000472333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	5.01267	5.08708	5.16149	0.0427653	0.011221	0.13762	0.071709
chr12	42087091	42087190	5415693	0	-	0.383838	(0.36,0.39]	chr12	530095	54	UTR3	UTR3:EXON_MRNA	GXYLT1	ENSG00000151233.11	ENST00000398675.8:ENST00000280876.6	protein_coding	protein_coding	protein_coding	protein_coding	1	130	2	4.64415	5.087009999999999	5.52987	0.0287883	5.4733e-4	0.115991	0.0093303
chr11	791338	791434	4969404	0	-	0.614583	(0.58,1]	chr11	480765	10	UTR3	UTR3:EXON_MRNA	SLC25A22	ENSG00000177542.11	ENST00000628067.3:ENST00000320230.9	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.76284	5.08689	5.41094	0.0471737	0.00240622	0.143232	0.0261006
chr2	240521123	240521213	1394646	0	-	0.677778	(0.58,1]	chr2	149020	2	INTRON	INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000405523.7	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.76284	5.08689	5.41094	0.0471737	0.00240622	0.143232	0.0261006
chr21	45444532	45444632	7630708	0	+	0.65	(0.58,1]	chr21	797656	387	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.76284	5.08689	5.41094	0.0471737	0.00240622	0.143232	0.0261006
chr12	112970034	112970134	5333052	0	+	0.48	(0.45,0.485]	chr12	520373	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	OAS3	ENSG00000111331.14	ENST00000679812.1:ENST00000680090.1:ENST00000681346.1:ENST00000681002.1:ENST00000679505.1:ENST00000680044.1:ENST00000681497.1:ENST00000228928.12:ENST00000679547.1:ENST00000681134.1:ENST00000679517.1:ENST00000681764.1:ENST00000679912.1:ENST00000679354.1:ENST00000681007.1:ENST00000680177.1:ENST00000679483.1:ENST00000679493.1:ENST00000679562.1:ENST00000680293.1:ENST00000549918.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	118	2	4.39187	5.086415000000001	5.78096	0.0166968	8.95692e-4	0.0884836	0.0131712
chr14	94308557	94308654	6046258	0	-	0.536082	(0.523,0.58]	chr14	593049	20	INTRON	INTRON	SERPINA6	ENSG00000170099.6	ENST00000341584.4:ENST00000555056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	302	2	5.00393	5.086405	5.16888	0.00134638	7.81032e-5	0.0224436	0.00227541
chr4	185797870	185797970	2372184	0	-	0.52	(0.485,0.523]	chr4	237058	221	INTRON	INTRON	SORBS2	ENSG00000154556.19	ENST00000284776.11:ENST00000695409.1:ENST00000319471.13:ENST00000449407.6:ENST00000355634.9:ENST00000451974.6:ENST00000393528.7:ENST00000487184.2:ENST00000695410.1:ENST00000695411.1:ENST00000470685.5:ENST00000439914.5:ENST00000439049.5:ENST00000451958.5:ENST00000444781.5:ENST00000419063.5:ENST00000393523.6:ENST00000420158.5:ENST00000421639.5:ENST00000493709.5:ENST00000431902.5:ENST00000415274.5:ENST00000432655.5:ENST00000428330.5:ENST00000464819.5:ENST00000478249.5:ENST00000429056.5:ENST00000463104.5:ENST00000456060.5:ENST00000476878.1:ENST00000462661.1:ENST00000469627.1:ENST00000488562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	113	2	4.17794	5.08634	5.99474	0.0103305	0.0014639	0.0684871	0.0185482
chr1	10514137	10514237	26489	0	+	0.43	(0.419,0.45]	chr1	3148	185	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000472851.1:ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	332	2	4.64571	5.086320000000001	5.52693	0.00407895	4.95849e-5	0.0413652	0.00163832
chr11	128989507	128989606	5141922	0	-	0.343434	(0.33,0.36]	chr11	499822	10	INTRON	INTRON	ARHGAP32	ENSG00000134909.19	ENST00000682385.1:ENST00000310343.13:ENST00000526162.5:ENST00000392657.7:ENST00000524655.5:ENST00000527272.1:ENST00000533509.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	53	2	4.70894	5.086245	5.46355	0.0798152	0.00462971	0.176933	0.0408278
chr10	27226443	27226542	4652716	0	-	0.474747	(0.45,0.485]	chr10	444298	26	INTRON	INTRON	ACBD5	ENSG00000107897.20	ENST00000677440.1:ENST00000676511.1:ENST00000676997.1:ENST00000396271.8:ENST00000375897.7:ENST00000679293.1:ENST00000375905.8:ENST00000375901.5:ENST00000676599.1:ENST00000678446.1:ENST00000679220.1:ENST00000678392.1:ENST00000677509.1:ENST00000677248.1:ENST00000677667.1:ENST00000677200.1:ENST00000677141.1:ENST00000677960.1:ENST00000677901.1:ENST00000676732.1:ENST00000676648.1:ENST00000677441.1:ENST00000677311.1:ENST00000375888.5:ENST00000676731.1:ENST00000476758.1:ENST00000426079.5:ENST00000412279.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	4.74641	5.08614	5.42587	0.0290571	0.0193126	0.116079	0.0994526
chr8	25468513	25468613	3776586	0	+	0.48	(0.45,0.485]	chr8	363809	1	SS5_PROX	SS5_PROX:INTRON	CDCA2	ENSG00000184661.14	ENST00000380665.3:ENST00000330560.8:ENST00000523454.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	4.74641	5.08614	5.42587	0.0290571	0.0193126	0.116079	0.0994526
chrX	107113768	107113868	8087309	0	-	0.38	(0.36,0.39]	chrX	843301	3	SS3_PROX	SS3_PROX:INTRON	RBM41	ENSG00000089682.17	ENST00000685964.1:ENST00000372487.5:ENST00000495517.5:ENST00000372479.7:ENST00000434854.1:ENST00000475556.1:ENST00000485676.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	53	2	4.7639	5.086095	5.40829	0.0811309	0.00581205	0.177951	0.0472624
chr19	2335519	2335619	7189476	0	+	0.62	(0.58,1]	chr19	731782	4	INTRON	INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	50	2	4.95814	5.085955	5.21377	0.0230012	0.0074469	0.102982	0.0553519
chr19	2441516	2441616	7309601	0	-	0.64	(0.58,1]	chr19	753890	26	INTRON	INTRON	LMNB2	ENSG00000176619.13	ENST00000325327.4	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.95814	5.085955	5.21377	0.0230012	0.0074469	0.102982	0.0553519
chr19	4011437	4011535	7192336	0	+	0.602041	(0.58,1]	chr19	732461	33	INTRON	INTRON	PIAS4	ENSG00000105229.7	ENST00000262971.3:ENST00000599999.5:ENST00000600566.5:ENST00000593518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	50	2	4.95814	5.085955	5.21377	0.0230012	0.0074469	0.102982	0.0553519
chr7	215462	215562	3305809	0	+	0.68	(0.58,1]	chr7	320161	61	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.95814	5.085955	5.21377	0.0230012	0.0074469	0.102982	0.0553519
chr9	124494837	124494936	4402673	0	-	0.646465	(0.58,1]	chr9	419817	13	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.95814	5.085955	5.21377	0.0230012	0.0074469	0.102982	0.0553519
chr10	102646021	102646121	4576484	0	+	0.68	(0.58,1]	chr10	437279	2	SS5_PROX	SS5_PROX:INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.81862	5.085380000000001	5.35214	0.0181452	0.0102696	0.0921579	0.0678072
chr11	70760570	70760670	5061887	0	-	0.59	(0.58,1]	chr11	492701	427	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.81862	5.085380000000001	5.35214	0.0181452	0.0102696	0.0921579	0.0678072
chr13	113052563	113052658	5656161	0	+	0.6	(0.58,1]	chr13	555184	1	UTR3	UTR3:EXON_MRNA:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.81862	5.085380000000001	5.35214	0.0181452	0.0102696	0.0921579	0.0678072
chr17	40351720	40351809	6734478	0	+	0.651685	(0.58,1]	chr17	677357	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RARA	ENSG00000131759.18	ENST00000254066.10:ENST00000394089.6:ENST00000425707.7:ENST00000394086.7:ENST00000394081.7:ENST00000475125.1:ENST00000420042.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.81862	5.085380000000001	5.35214	0.0181452	0.0102696	0.0921579	0.0678072
chr19	1173423	1173523	7305787	0	-	0.66	(0.58,1]	chr19	753059	3	SS5_PROX	SS5_PROX:INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.81862	5.085380000000001	5.35214	0.0181452	0.0102696	0.0921579	0.0678072
chr19	1289387	1289487	7186898	0	+	0.69	(0.58,1]	chr19	731132	27	INTRON	INTRON	EFNA2	ENSG00000099617.4	ENST00000215368.4	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.81862	5.085380000000001	5.35214	0.0181452	0.0102696	0.0921579	0.0678072
chr9	5983963	5984063	4274001	0	-	0.39	(0.36,0.39]	chr9	408217	142	INTRON	INTRON	KIAA2026	ENSG00000183354.12	ENST00000399933.8:ENST00000381461.6:ENST00000513355.2	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.92735	5.08526	5.24317	0.0433841	0.0160072	0.138813	0.0894586
chr16	81667473	81667571	6509981	0	+	0.336735	(0.33,0.36]	chr16	645961	3	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.8729	5.08522	5.29754	0.0360263	0.0164782	0.127853	0.091341
chr18	50115506	50115606	7165791	0	-	0.43	(0.419,0.45]	chr18	728374	180	INTRON	INTRON	MYO5B	ENSG00000167306.20	ENST00000285039.12	protein_coding	protein_coding	protein_coding	protein_coding	1	120	2	4.02619	5.0852	6.14421	0.0127879	0.00294478	0.0769397	0.0300172
chr9	123035637	123035737	4234773	0	+	0.41	(0.39,0.419]	chr9	401984	15	INTRON	INTRON	RABGAP1	ENSG00000011454.18	ENST00000456584.5:ENST00000373647.9:ENST00000493854.5:ENST00000475607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	53	2	4.76257	5.085145000000001	5.40772	0.0822354	0.00585126	0.179396	0.0474117
chr1	95033332	95033431	539701	0	-	0.353535	(0.33,0.36]	chr1	62868	57	INTRON	INTRON	ALG14	ENSG00000172339.10	ENST00000370205.6	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.89468	5.085125	5.27557	0.0629186	0.00707628	0.160778	0.0540197
chr2	108560828	108560927	871214	0	+	0.353535	(0.33,0.36]	chr2	98283	259	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.89468	5.085125	5.27557	0.0629186	0.00707628	0.160778	0.0540197
chr1	214006267	214006366	339541	0	+	0.424242	(0.419,0.45]	chr1	38103	6	INTRON	INTRON	PROX1	ENSG00000117707.16	ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.81671	5.08494	5.35317	0.08258	0.00714797	0.179396	0.0541241
chr3	78981615	78981715	1837322	0	-	0.42	(0.419,0.45]	chr3	188611	423	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.81671	5.08494	5.35317	0.08258	0.00714797	0.179396	0.0541241
chr7	1938591	1938691	3529610	0	-	0.42	(0.419,0.45]	chr7	340962	13	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000450235.5:ENST00000437877.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	4.81671	5.08494	5.35317	0.08258	0.00714797	0.179396	0.0541241
chr14	35623363	35623463	5959506	0	-	0.31	(0.29,0.33]	chr14	584171	173	INTRON	INTRON	RALGAPA1	ENSG00000174373.17	ENST00000307138.10:ENST00000389698.7:ENST00000554573.5:ENST00000680220.1:ENST00000554259.6:ENST00000637992.1:ENST00000382366.7:ENST00000553892.2	protein_coding	protein_coding	protein_coding	protein_coding	1	135	2	3.55349	5.084865000000001	6.61624	0.0192689	1.75397e-4	0.0954446	0.00411241
chr6	41720969	41721068	3132603	0	-	0.676768	(0.58,1]	chr6	305481	152	INTRON	INTRON	TFEB	ENSG00000112561.19	ENST00000358871.6:ENST00000373033.6:ENST00000230323.8:ENST00000677531.1:ENST00000403298.9:ENST00000420312.6:ENST00000424495.2:ENST00000678831.1:ENST00000419396.6:ENST00000416140.6:ENST00000678871.1:ENST00000394283.5:ENST00000679237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	104	2	4.13012	5.084524999999999	6.03893	0.00503456	0.00116063	0.0464858	0.0157704
chr15	25018166	25018264	6064035	0	+	0.285714	[0,0.29]	chr15	595414	31	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	2	146	2	3.77601	5.084465	6.39292	0.0027299	0.00113741	0.0331786	0.0155595
chr15	25016202	25016300	6064015	0	+	0.357143	(0.33,0.36]	chr15	595414	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	4	512	2	5.02804	5.08446	5.14088	0.00121137	2.02495e-5	0.0210863	8.47843e-4
chr8	133296212	133296304	4084289	0	-	0.706522	(0.58,1]	chr8	388364	1	SS5_PROX	SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000522738.1:ENST00000523892.5:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	326	2	5.08353	5.084435	5.08534	0.00549379	2.02949e-4	0.0454065	0.00805543
chr4	99605853	99605951	2092832	0	+	0.459184	(0.45,0.485]	chr4	213301	38	INTRON	INTRON	MTTP	ENSG00000138823.14	ENST00000457717.6:ENST00000511045.6:ENST00000265517.10	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	4.41963	5.0843799999999995	5.74913	0.0355247	0.017574	0.137983	0.0906595
chr7	148813077	148813172	3730837	0	-	0.473684	(0.45,0.485]	chr7	358399	10	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000684400.1:ENST00000683744.1:ENST00000684510.1:ENST00000682317.1:ENST00000683293.1:ENST00000682263.1:ENST00000684300.1:ENST00000476773.5:ENST00000483967.5:ENST00000684436.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	59	2	4.41963	5.0843799999999995	5.74913	0.0355247	0.017574	0.137983	0.0906595
chr19	1170438	1170538	7305757	0	-	0.67	(0.58,1]	chr19	753058	14	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	1	124	2	3.59052	5.08437	6.57822	0.014012	7.66421e-5	0.0807513	0.00224403
chr6	107421801	107421901	3224460	0	-	0.41	(0.39,0.419]	chr6	312575	871	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9:ENST00000369031.4	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.92679	5.084305	5.24182	0.0441194	0.0160946	0.140174	0.0896852
chr6	137869820	137869919	3010385	0	+	0.393939	(0.39,0.419]	chr6	294494	17	INTRON	INTRON	TNFAIP3	ENSG00000118503.16	ENST00000421450.1:ENST00000612899.5:ENST00000420009.5:ENST00000237289.8:ENST00000433680.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.92679	5.084305	5.24182	0.0441194	0.0160946	0.140174	0.0896852
chr1	148561735	148561821	582295	0	-	0.430233	(0.419,0.45]	chr1	67044	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF14	ENSG00000270629.7	ENST00000619423.4:ENST00000614999.4:ENST00000621066.4:ENST00000611826.4:ENST00000616120.4:ENST00000621070.4	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.98054	5.08429	5.18804	0.051668	0.0154548	0.148503	0.0869771
chr9	125125937	125126037	4407947	0	-	0.44	(0.419,0.45]	chr9	420168	595	INTRON	INTRON	SCAI	ENSG00000173611.18	ENST00000336505.11:ENST00000373549.8:ENST00000477186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	4.98054	5.08429	5.18804	0.051668	0.0154548	0.148503	0.0869771
chr16	619357	619457	6368587	0	+	0.65	(0.58,1]	chr16	628044	7	INTRON	INTRON	RAB40C	ENSG00000197562.10	ENST00000535977.5:ENST00000569575.5:ENST00000539661.5:ENST00000566290.5:ENST00000248139.8:ENST00000568586.5:ENST00000538492.5:ENST00000565511.5:ENST00000509637.6:ENST00000563109.1:ENST00000564703.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	104	2	4.10248	5.084235	6.06599	0.00477081	0.0012583	0.0450109	0.0167083
chr10	79112420	79112520	4532479	0	+	0.6	(0.58,1]	chr10	432420	428	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.18518	5.0842	5.98322	0.0374658	0.00562007	0.139793	0.0493906
chr7	2042417	2042516	3530656	0	-	0.414141	(0.39,0.419]	chr7	340995	274	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	4.63037	5.084175	5.53798	0.0963077	0.0043589	0.189169	0.0391245
chr7	47515340	47515440	3588966	0	-	0.41	(0.39,0.419]	chr7	346138	80	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	2	197	2	3.09398	5.08386	7.07374	0.0254364	7.96608e-5	0.108654	0.00230787
chr11	14851384	14851484	4807113	0	+	0.38	(0.36,0.39]	chr11	460763	70	INTRON	INTRON	PDE3B	ENSG00000152270.9	ENST00000282096.9:ENST00000455098.2	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.79458	5.083825	5.37307	0.0361409	0.0207145	0.127853	0.102713
chr2	101134740	101134840	1239931	0	-	0.39	(0.36,0.39]	chr2	133786	249	INTRON	INTRON	TBC1D8	ENSG00000204634.13	ENST00000409318.2:ENST00000376840.8:ENST00000463469.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	4.79458	5.083825	5.37307	0.0361409	0.0207145	0.127853	0.102713
chr17	316730	316829	6821443	0	-	0.59596	(0.58,1]	chr17	689582	102	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	109	2	3.68463	5.08349	6.48235	0.00404771	0.00202884	0.0371291	0.0283135
chr21	37403677	37403777	7619338	0	+	0.55	(0.523,0.58]	chr21	796015	282	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	1	113	2	3.87732	5.083475	6.28963	0.00618741	0.00318505	0.0519442	0.0316631
chr8	140957526	140957625	4092704	0	-	0.434343	(0.419,0.45]	chr8	388926	28	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	331	2	4.73379	5.083465	5.43314	0.00348751	6.51549e-5	0.0379065	0.00199309
chr1	214005772	214005871	339536	0	+	0.343434	(0.33,0.36]	chr1	38103	1	INTRON	INTRON	PROX1	ENSG00000117707.16	ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2	protein_coding	protein_coding	protein_coding	protein_coding	1	128	2	4.66424	5.083135	5.50203	0.0265895	4.69202e-4	0.111433	0.00833075
chr2	134177153	134177253	896002	0	+	0.33	(0.29,0.33]	chr2	101196	496	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	113	2	4.13733	5.083	6.02867	0.00880071	0.00169244	0.0630883	0.0204799
chr8	130417148	130417247	4083373	0	-	0.464646	(0.45,0.485]	chr8	388188	148	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000520927.5:ENST00000524299.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	119	2	4.4494	5.082995	5.71659	0.018513	7.63833e-4	0.0928429	0.0117723
chr18	6118408	6118508	7110898	0	-	0.4	(0.39,0.419]	chr18	723846	245	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000400105.6:ENST00000317931.12:ENST00000400104.7	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.79402	5.08287	5.37172	0.0367885	0.0208208	0.129052	0.102713
chr10	3168933	3169030	4621565	0	-	0.556701	(0.523,0.58]	chr10	441639	14	EXON_MRNA	EXON_MRNA:INTRON	PITRM1	ENSG00000107959.17	ENST00000224949.9:ENST00000380989.6:ENST00000451104.6:ENST00000677384.1:ENST00000679309.1:ENST00000678403.1:ENST00000380994.6:ENST00000678855.1:ENST00000678436.1:ENST00000677817.1:ENST00000677305.1:ENST00000678986.1:ENST00000677001.1:ENST00000678987.1:ENST00000678601.1:ENST00000676953.1:ENST00000676519.1:ENST00000678050.1:ENST00000678370.1:ENST00000677922.1:ENST00000678441.1:ENST00000679134.1:ENST00000678539.1:ENST00000679210.1:ENST00000430362.2:ENST00000678663.1:ENST00000678972.1:ENST00000488065.2:ENST00000678457.1:ENST00000677181.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	52	2	4.90222	5.08277	5.26332	0.0337698	0.0125132	0.124319	0.0765738
chr11	70738187	70738287	5061663	0	-	0.53	(0.523,0.58]	chr11	492701	203	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	4.90222	5.08277	5.26332	0.0337698	0.0125132	0.124319	0.0765738
chr15	45172903	45172989	6250306	0	-	0.674419	(0.58,1]	chr15	615590	2	INTRON	INTRON	SHF	ENSG00000138606.20	ENST00000290894.12:ENST00000690270.1:ENST00000560540.5:ENST00000560734.5:ENST00000458022.6:ENST00000558294.1:ENST00000561239.6:ENST00000560471.5:ENST00000559566.5:ENST00000558685.1	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.3962	5.08277	5.76934	0.0250928	0.00849371	0.114418	0.0617717
chr16	58716562	58716662	6600253	0	-	0.53	(0.523,0.58]	chr16	660282	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GOT2	ENSG00000125166.13	ENST00000245206.10:ENST00000434819.2:ENST00000564400.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	4.90222	5.08277	5.26332	0.0337698	0.0125132	0.124319	0.0765738
chr16	81619481	81619580	6509491	0	+	0.575758	(0.523,0.58]	chr16	645921	86	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	52	2	4.90222	5.08277	5.26332	0.0337698	0.0125132	0.124319	0.0765738
chr7	47332468	47332568	3587113	0	-	0.68	(0.58,1]	chr7	346016	271	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.3962	5.08277	5.76934	0.0250928	0.00849371	0.114418	0.0617717
chr8	25391221	25391308	3776204	0	+	0.528736	(0.523,0.58]	chr8	363717	6	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000467709.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.90222	5.08277	5.26332	0.0337698	0.0125132	0.124319	0.0765738
chr7	2041218	2041318	3530644	0	-	0.54	(0.523,0.58]	chr7	340995	262	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	4.50593	5.08276	5.65959	0.094303	0.0021416	0.188571	0.0240825
chr15	69182242	69182342	6142363	0	+	0.46	(0.45,0.485]	chr15	604176	211	INTRON	INTRON	GLCE	ENSG00000138604.10	ENST00000559798.2:ENST00000261858.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	152	2	4.20619	5.082565000000001	5.95894	0.00692008	0.00119342	0.0553898	0.016037
chr2	138572058	138572157	904601	0	+	0.313131	(0.29,0.33]	chr2	101987	31	UTR3	UTR3:EXON_MRNA:INTRON	SPOPL:ENSG00000241772	ENSG00000144228.9:ENSG00000241772.2	ENST00000280098.9:ENST00000458007.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	4	476	2	4.89607	5.082305	5.26854	6.96879e-4	2.26375e-5	0.0155984	9.21222e-4
chr14	36304093	36304192	5961907	0	-	0.515152	(0.485,0.523]	chr14	584420	29	INTRON	INTRON	MBIP	ENSG00000151332.20	ENST00000416007.9:ENST00000318473.11:ENST00000359527.11:ENST00000604768.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	4.71964	5.082265	5.44489	0.0718646	0.00377098	0.168159	0.0353672
chr16	83917976	83918076	6513104	0	+	0.51	(0.485,0.523]	chr16	646141	26	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.71964	5.082265	5.44489	0.0718646	0.00377098	0.168159	0.0353672
chr14	54790732	54790831	5821704	0	+	0.313131	(0.29,0.33]	chr14	569165	19	UTR3	UTR3:EXON_MRNA	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9	protein_coding	protein_coding	protein_coding	protein_coding	3	395	2	4.89596	5.08225	5.26854	6.96879e-4	4.80049e-5	0.0155984	0.00159902
chr10	18621989	18622089	4642954	0	-	0.32	(0.29,0.33]	chr10	443351	53	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7:ENST00000606425.2	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.89341	5.081975	5.27054	0.0308815	0.0135896	0.119556	0.0811697
chr7	29204082	29204182	3334384	0	+	0.46	(0.45,0.485]	chr7	322843	57	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5:ENST00000222792.11:ENST00000409350.5:ENST00000409964.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	413	2	4.82877	5.08196	5.33515	7.94169e-4	6.51879e-5	0.016765	0.00199309
chr4	70722398	70722485	2054548	0	+	0.321839	(0.29,0.33]	chr4	209968	6	UTR5	UTR5:EXON_MRNA:INTRON	RUFY3	ENSG00000018189.13	ENST00000503876.5:ENST00000417478.6:ENST00000381006.8:ENST00000226328.8	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.51301	5.08183	5.65065	0.0885563	0.00240038	0.183874	0.0261006
chr10	45858191	45858290	4678151	0	-	0.484848	(0.45,0.485]	chr10	446183	29	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000610690.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	2	156	2	3.88214	5.08172	6.2813	0.00719875	0.00105967	0.056408	0.0147961
chr1	206733597	206733694	327099	0	+	0.474227	(0.45,0.485]	chr1	36847	10	UTR3	UTR3:EXON_MRNA	MAPKAPK2	ENSG00000162889.11	ENST00000367103.4	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.64346	5.081675000000001	5.51989	0.0850039	0.00357389	0.181766	0.0342681
chr1	17665894	17665994	54870	0	+	0.55	(0.523,0.58]	chr1	5603	9	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.96197	5.081505	5.20104	0.0521137	0.00648051	0.148503	0.0503748
chr14	95408061	95408161	6048857	0	-	0.56	(0.523,0.58]	chr14	593438	9	UTR3	UTR3:EXON_MRNA	SYNE3	ENSG00000176438.13	ENST00000682763.1:ENST00000557275.5	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.96197	5.081505	5.20104	0.0521137	0.00648051	0.148503	0.0503748
chr2	11814289	11814388	722751	0	+	0.545455	(0.523,0.58]	chr2	84465	88	INTRON	INTRON	LPIN1	ENSG00000134324.12	ENST00000449576.6:ENST00000425416.6:ENST00000396097.5:ENST00000396099.5:ENST00000256720.6:ENST00000674199.1:ENST00000404113.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.96197	5.081505	5.20104	0.0521137	0.00648051	0.148503	0.0503748
chr9	120404212	120404312	4383951	0	-	0.56	(0.523,0.58]	chr9	418256	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000479584.2:ENST00000690814.1:ENST00000686842.1:ENST00000691551.1:ENST00000693714.1:ENST00000693386.1:ENST00000688512.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000689012.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000425647.1:ENST00000360822.8:ENST00000693728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	5.01677	5.0813950000000006	5.14602	0.0482765	0.00734367	0.144601	0.0550721
chr9	129339607	129339703	4250333	0	+	0.552083	(0.523,0.58]	chr9	404662	3	INTRON	INTRON	LINC01503	ENSG00000233901.7	ENST00000427109.2:ENST00000654735.1:ENST00000654190.1:ENST00000657886.1:ENST00000661745.1:ENST00000436710.6:ENST00000660635.1:ENST00000657651.1:ENST00000665063.2:ENST00000667257.1:ENST00000690929.1:ENST00000654148.1:ENST00000444125.3:ENST00000666671.1:ENST00000660036.1:ENST00000657393.1:ENST00000659864.1	lncRNA	lncRNA	lncRNA	lncRNA	0	51	2	5.01677	5.0813950000000006	5.14602	0.0482765	0.00734367	0.144601	0.0550721
chrX	139919348	139919448	8119826	0	-	0.54	(0.523,0.58]	chrX	845912	872	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	5.01677	5.0813950000000006	5.14602	0.0482765	0.00734367	0.144601	0.0550721
chr3	10888092	10888192	1408413	0	+	0.5	(0.485,0.523]	chr3	151278	126	INTRON	INTRON	SLC6A11	ENSG00000132164.10	ENST00000254488.7	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.50634	5.081175	5.65601	0.0939553	0.00224147	0.188571	0.024843
chr2	174213072	174213172	1320585	0	-	0.35	(0.33,0.36]	chr2	141020	707	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	1	123	2	4.51528	5.08115	5.64702	0.0212683	7.08947e-4	0.0996805	0.0111903
chr5	302778	302877	2377950	0	+	0.575758	(0.523,0.58]	chr5	237467	260	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	115	2	3.72444	5.080995	6.43755	0.00473049	0.00470358	0.0449253	0.0413976
chr16	23389774	23389869	6567873	0	-	0.526316	(0.523,0.58]	chr16	655261	3	INTRON	INTRON	COG7	ENSG00000168434.13	ENST00000307149.10:ENST00000566364.1:ENST00000561854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	4.68785	5.080835	5.47382	0.0244797	0.0194172	0.106683	0.0994526
chr22	37493490	37493585	7808115	0	-	0.557895	(0.523,0.58]	chr22	818359	3	INTRON	INTRON	CARD10	ENSG00000100065.15	ENST00000403299.5:ENST00000251973.10:ENST00000488141.5:ENST00000467812.1:ENST00000406271.7:ENST00000437756.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	60	2	4.34118	5.080785	5.82039	0.0372357	0.0139724	0.139793	0.0805959
chr16	18843842	18843941	6560188	0	-	0.313131	(0.29,0.33]	chr16	654007	10	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000563448.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	4.96914	5.08065	5.19216	0.0481918	0.00712176	0.144601	0.0541241
chr2	54219596	54219696	797409	0	+	0.48	(0.45,0.485]	chr2	90756	764	INTRON	INTRON	ACYP2	ENSG00000170634.13	ENST00000607452.6:ENST00000394666.7:ENST00000303536.8:ENST00000494922.6:ENST00000606865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.77571	5.08062	5.38553	0.0719884	0.00490471	0.168159	0.0422077
chr16	85394734	85394834	6517018	0	+	0.53	(0.523,0.58]	chr16	646391	354	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.43597	5.08042	5.72487	0.0313935	0.0163679	0.127822	0.0875379
chr10	37836716	37836816	4673931	0	-	0.4	(0.39,0.419]	chr10	445789	32	INTRON	INTRON	ZNF248	ENSG00000198105.16	ENST00000615949.6:ENST00000485560.5:ENST00000395867.8:ENST00000357328.8:ENST00000611278.4:ENST00000494133.1:ENST00000374648.7:ENST00000395873.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	62	2	4.30157	5.080295	5.85902	0.0496288	0.0177874	0.160725	0.0914273
chr15	35418993	35419093	6221861	0	-	0.36	(0.33,0.36]	chr15	612683	77	INTRON	INTRON	DPH6	ENSG00000134146.12	ENST00000256538.9:ENST00000558266.5:ENST00000561411.1:ENST00000559784.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	4.57035	5.08019	5.59003	0.0945416	0.00344516	0.188571	0.0333853
chr10	19295471	19295571	4451785	0	+	0.35	(0.33,0.36]	chr10	426753	119	INTRON	INTRON	MALRD1	ENSG00000204740.11	ENST00000454679.7:ENST00000377266.7	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.83538	5.080145	5.32491	0.0679743	0.00634179	0.164413	0.0501889
chr14	35727961	35728061	5960582	0	-	0.39	(0.36,0.39]	chr14	584304	2	SS5_PROX	SS5_PROX:INTRON	RALGAPA1	ENSG00000174373.17	ENST00000307138.10:ENST00000389698.7:ENST00000680220.1:ENST00000554259.6:ENST00000637992.1:ENST00000382366.7:ENST00000553892.2:ENST00000554652.5:ENST00000554704.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	177	2	4.27056	5.08009	5.88962	0.0166261	4.37747e-4	0.0884836	0.00796534
chr11	129845535	129845635	4965070	0	+	0.31	(0.29,0.33]	chr11	479911	169	INTRON	INTRON	TMEM45B	ENSG00000151715.8	ENST00000281441.8:ENST00000527754.1:ENST00000529381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	155	2	3.29888	5.07984	6.8608	0.00480682	0.00184805	0.041675	0.0268409
chr11	68331074	68331174	4882268	0	+	0.5	(0.485,0.523]	chr11	470542	179	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	5.01719	5.079835	5.14248	0.0480495	0.00761903	0.144601	0.0561937
chr15	99602024	99602109	6198701	0	+	0.505882	(0.485,0.523]	chr15	609961	2	UTR5	UTR5:EXON_MRNA:INTRON	MEF2A	ENSG00000068305.18	ENST00000560493.5:ENST00000354410.9:ENST00000558812.5:ENST00000558856.5:ENST00000685785.1:ENST00000559036.5:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000558049.5:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1:ENST00000559903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	51	2	5.01719	5.079835	5.14248	0.0480495	0.00761903	0.144601	0.0561937
chr15	98721559	98721659	6194060	0	+	0.47	(0.45,0.485]	chr15	609659	131	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	52	2	4.95056	5.07981	5.20906	0.0399616	0.0127826	0.133954	0.0773423
chr16	53917669	53917768	6459685	0	+	0.464646	(0.45,0.485]	chr16	640575	58	INTRON	INTRON	FTO	ENSG00000140718.21	ENST00000636491.1:ENST00000636218.1:ENST00000637001.1:ENST00000471389.6:ENST00000636992.1:ENST00000637969.1:ENST00000637845.1:ENST00000637562.1:ENST00000636030.1:ENST00000464071.1:ENST00000563011.2:ENST00000612285.2:ENST00000431610.6:ENST00000460382.5:ENST00000637062.1:ENST00000463855.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	52	2	4.95056	5.07981	5.20906	0.0399616	0.0127826	0.133954	0.0773423
chr17	80324729	80324829	6807832	0	+	0.46	(0.45,0.485]	chr17	687451	3	SS3_PROX	SS3_PROX:INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000559070.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	52	2	4.95056	5.07981	5.20906	0.0399616	0.0127826	0.133954	0.0773423
chr22	37743732	37743832	7721744	0	+	0.48	(0.45,0.485]	chr22	808630	23	INTRON	INTRON	TRIOBP	ENSG00000100106.22	ENST00000644935.1:ENST00000344404.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.95056	5.07981	5.20906	0.0399616	0.0127826	0.133954	0.0773423
chr7	78990911	78991011	3621901	0	-	0.47	(0.45,0.485]	chr7	349212	436	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000440555.2:ENST00000636989.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	4.95056	5.07981	5.20906	0.0399616	0.0127826	0.133954	0.0773423
chr8	22005886	22005986	3768699	0	+	0.47	(0.45,0.485]	chr8	362335	9	UTR3	UTR3:EXON_MRNA	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000433566.8	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.95056	5.07981	5.20906	0.0399616	0.0127826	0.133954	0.0773423
chr1	43561316	43561416	107052	0	+	0.54	(0.523,0.58]	chr1	13192	70	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	112	2	3.96183	5.079784999999999	6.19774	0.0072907	0.00255427	0.0567247	0.0273114
chr13	112871800	112871900	5654390	0	+	0.56	(0.523,0.58]	chr13	555050	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000471555.5:ENST00000415301.2:ENST00000419631.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	112	2	3.96183	5.079784999999999	6.19774	0.0072907	0.00255427	0.0567247	0.0273114
chr16	85376341	85376441	6516834	0	+	0.65	(0.58,1]	chr16	646391	170	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	4.29454	5.079725	5.86491	0.0305531	0.00707578	0.126768	0.0558168
chr19	6691426	6691526	7322656	0	-	0.53	(0.523,0.58]	chr19	756435	3	INTRON	INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000695653.1:ENST00000695654.1:ENST00000695692.1:ENST00000695652.1:ENST00000695655.1:ENST00000598805.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	206	2	3.23248	5.079655	6.92683	0.0020948300000000002	0.00188118	0.0270971	0.0238576
chr10	18563763	18563863	4642366	0	-	0.41	(0.39,0.419]	chr10	443321	114	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	120	2	3.74353	5.07963	6.41573	0.00718148	0.00554536	0.056408	0.0456911
chr20	10427332	10427432	7524953	0	-	0.23	[0,0.29]	chr20	785433	62	INTRON	INTRON	MKKS	ENSG00000125863.20:ENSG00000285508.1	ENST00000347364.7:ENST00000651692.1:ENST00000652676.1:ENST00000399054.6:ENST00000609375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.94223	5.07962	5.21701	0.0379936	0.00547146	0.131324	0.0454065
chr20	34567444	34567543	7547102	0	-	0.545455	(0.523,0.58]	chr20	787854	61	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.905	5.079515000000001	5.25403	0.0563605	0.00573579	0.154188	0.0467736
chr20	58698283	58698383	7498666	0	+	0.58	(0.523,0.58]	chr20	782003	2	SS3_PROX	SS3_PROX:INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	51	2	4.905	5.079515000000001	5.25403	0.0563605	0.00573579	0.154188	0.0467736
chr9	94996019	94996119	4189953	0	+	0.58	(0.523,0.58]	chr9	398123	162	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000297979.9:ENST00000424143.5:ENST00000462125.5:ENST00000479161.5:ENST00000451893.5:ENST00000460573.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.905	5.079515000000001	5.25403	0.0563605	0.00573579	0.154188	0.0467736
chr2	95808096	95808195	1218455	0	-	0.40404	(0.39,0.419]	chr2	131255	4	INTRON	INTRON	LINC00342	ENSG00000232931.6	ENST00000660608.1:ENST00000660641.1:ENST00000668171.1:ENST00000664191.1:ENST00000655069.1:ENST00000657232.1:ENST00000663557.1:ENST00000660416.1:ENST00000662121.1:ENST00000448494.1:ENST00000659287.1:ENST00000412393.5	lncRNA	lncRNA	lncRNA	lncRNA	1	150	2	3.99175	5.07951	6.16727	0.01159	9.41833e-4	0.0731024	0.0135546
chr2	10164247	10164347	717943	0	+	0.45	(0.419,0.45]	chr2	84002	81	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	55	2	4.7145	5.079485	5.44447	0.0364384	0.0256236	0.128173	0.115966
chr15	28215902	28216002	6207130	0	-	0.29	[0,0.29]	chr15	611110	1	SS3_PROX	SS3_PROX:INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.05409	5.0794250000000005	5.10476	0.0318802	0.0071055	0.12158	0.0541241
chr16	85509585	85509685	6518167	0	+	0.57	(0.523,0.58]	chr16	646391	1503	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.60868	5.0794	5.55012	0.0226775	0.0217068	0.108193	0.100615
chrX	9568041	9568141	7843480	0	+	0.59	(0.58,1]	chrX	822423	71	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	105	2	3.89258	5.07928	6.26598	0.00318361	0.00229214	0.0360488	0.0253494
chr10	79230370	79230470	4533665	0	+	0.56	(0.523,0.58]	chr10	432457	137	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	5.06957	5.079195	5.08882	0.0448011	0.00834774	0.140478	0.0598672
chr19	33505964	33506063	7365913	0	-	0.525253	(0.523,0.58]	chr19	763467	46	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000651646.1:ENST00000590408.1:ENST00000593163.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	136	2	3.7036	5.079129999999999	6.45466	0.0156851	2.45921e-4	0.0852152	0.00524396
chr5	75363803	75363902	2456203	0	+	0.474747	(0.45,0.485]	chr5	245361	36	UTR3	UTR3:EXON_MRNA	HMGCR	ENSG00000113161.17	ENST00000679456.1:ENST00000681567.1:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	57	2	4.50852	5.07887	5.64922	0.0302873	0.020599	0.126768	0.0982852
chr20	56373956	56374056	7582163	0	-	0.35	(0.33,0.36]	chr20	792150	4	SS3_PROX	SS3_PROX:INTRON	AURKA	ENSG00000087586.18	ENST00000395914.5:ENST00000395913.7:ENST00000312783.10:ENST00000395911.5:ENST00000395915.8:ENST00000347343.6:ENST00000371356.6:ENST00000395907.5:ENST00000441357.5	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.73368	5.0786750000000005	5.42367	0.0299185	0.0216127	0.116945	0.105648
chr11	28117277	28117376	4823484	0	+	0.292929	(0.29,0.33]	chr11	461824	33	INTRON	INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000403099.5:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10:ENST00000634721.1:ENST00000634762.1:ENST00000437814.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.91217	5.078659999999999	5.24515	0.0522244	0.00631714	0.148503	0.0501889
chr17	241740	241839	6820687	0	-	0.30303	(0.29,0.33]	chr17	689558	73	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000570893.5:ENST00000576001.5:ENST00000570954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.91217	5.078659999999999	5.24515	0.0522244	0.00631714	0.148503	0.0501889
chr1	247036866	247036963	708042	0	-	0.329897	(0.29,0.33]	chr1	82794	24	UTR3	UTR3:EXON_MRNA:INTRON	ZNF670-ZNF695:ZNF670	ENSG00000135747.11:ENSG00000277462.2	ENST00000465049.6:ENST00000474541.1:ENST00000366503.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	4.59993	5.07865	5.55737	0.0243639	0.0196268	0.113231	0.095549
chr10	29481140	29481240	4471119	0	+	0.33	(0.29,0.33]	chr10	427764	122	INTRON	INTRON	SVIL-AS1	ENSG00000224597.11	ENST00000684815.1:ENST00000413405.6:ENST00000646086.2:ENST00000423223.6:ENST00000414457.6:ENST00000687838.1:ENST00000446807.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	55	2	4.59993	5.07865	5.55737	0.0243639	0.0196268	0.113231	0.095549
chr11	70776058	70776158	5062042	0	-	0.53	(0.523,0.58]	chr11	492701	582	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	4.7629	5.078085	5.39327	0.0277354	0.0167014	0.112851	0.0917029
chr20	43549889	43549986	7481041	0	+	0.57732000000000006	(0.523,0.58]	chr20	779362	18	UTR3	UTR3:EXON_MRNA	L3MBTL1	ENSG00000185513.17	ENST00000649917.1:ENST00000649698.1:ENST00000422861.3:ENST00000648715.1:ENST00000647827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	53	2	4.7629	5.078085	5.39327	0.0277354	0.0167014	0.112851	0.0917029
chr3	48425533	48425633	1766689	0	-	0.71	(0.58,1]	chr3	182282	2	SS3_PROX	SS3_PROX:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	348	2	4.76517	5.07798	5.39079	2.88709e-4	3.50987e-5	0.0096494	0.00126414
chr7	4771142	4771242	3310240	0	+	0.38	(0.36,0.39]	chr7	320850	88	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.94194	5.0779700000000005	5.214	0.064883	0.00887999	0.162218	0.0618231
chr11	585166	585266	4784868	0	+	0.52	(0.485,0.523]	chr11	457988	27	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.90542	5.0779499999999995	5.25048	0.0561086	0.0059614	0.154188	0.0479866
chr3	150745091	150745190	1943692	0	-	0.40404	(0.39,0.419]	chr3	197663	20	INTRON	INTRON	SIAH2	ENSG00000181788.4	ENST00000312960.4:ENST00000482706.1	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.99538	5.07793	5.16048	0.0613573	0.00999413	0.158506	0.0667545
chr10	79163531	79163631	4532992	0	+	0.52	(0.485,0.523]	chr10	432438	10	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	5.06999	5.077635	5.08528	0.0445854	0.0086528	0.140478	0.0612699
chr10	101883921	101884021	4750545	0	-	0.52	(0.485,0.523]	chr10	454117	337	INTRON	INTRON	ARMH3	ENSG00000120029.13	ENST00000370033.9:ENST00000495001.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	5.06999	5.077635	5.08528	0.0445854	0.0086528	0.140478	0.0612699
chrX	109686934	109687033	8091000	0	-	0.464646	(0.45,0.485]	chrX	843698	11	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000505855.1:ENST00000508092.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	114	2	4.06374	5.07752	6.0913	0.00998516	0.00216361	0.0673647	0.0242699
chr11	10532515	10532615	4996830	0	-	0.32	(0.29,0.33]	chr11	483439	1	INTRON	INTRON	RNF141	ENSG00000110315.7	ENST00000265981.7:ENST00000528665.5:ENST00000533412.5:ENST00000530156.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	4.75412	5.0773150000000005	5.40051	0.0252356	0.0180435	0.108065	0.0952934
chr2	121479419	121479518	1262520	0	-	0.30303	(0.29,0.33]	chr2	136083	91	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	53	2	4.75412	5.0773150000000005	5.40051	0.0252356	0.0180435	0.108065	0.0952934
chr6	34912880	34912980	2900748	0	+	0.44	(0.419,0.45]	chr6	284492	229	INTRON	INTRON	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1:ENST00000650178.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.7549	5.07712	5.39934	0.0888907	0.00646489	0.183874	0.0503748
chr6	52680918	52681016	2926989	0	+	0.397959	(0.39,0.419]	chr6	288209	34	INTRON	INTRON	TMEM14A	ENSG00000096092.6	ENST00000211314.5	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.9406	5.07702	5.21344	0.0658437	0.00893514	0.162385	0.0620271
chr7	75919298	75919396	3396646	0	+	0.489796	(0.485,0.523]	chr7	328048	2	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	422	2	4.71704	5.07696	5.43688	9.65978e-4	3.52233e-5	0.0186558	0.00126754
chr7	74495508	74495608	3391782	0	+	0.6	(0.58,1]	chr7	327343	410	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.6951	5.07691	5.45872	0.0521567	0.00211999	0.148503	0.0239744
chr16	75236330	75236416	6644471	0	-	0.511628	(0.485,0.523]	chr16	664410	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000566982.1:ENST00000563038.5:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10:ENST00000569340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	114	2	4.33291	5.07686	5.82081	0.0138807	9.5504e-4	0.0804838	0.0137043
chr14	39448891	39448991	5793589	0	+	0.41	(0.39,0.419]	chr14	567660	9	INTRON	INTRON	ENSG00000258526	ENSG00000258526.8	ENST00000650949.2:ENST00000659455.1:ENST00000652126.1:ENST00000662464.1:ENST00000651829.1:ENST00000665100.1:ENST00000685977.1:ENST00000655630.1:ENST00000666503.1:ENST00000650911.1:ENST00000656325.1:ENST00000662828.1:ENST00000666800.1	lncRNA	lncRNA	lncRNA	lncRNA	0	52	2	5.04815	5.076829999999999	5.10551	0.0572698	0.0112089	0.154343	0.071709
chr17	344716	344816	6821736	0	-	0.4	(0.39,0.419]	chr17	689629	34	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000577079.5:ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.04815	5.076829999999999	5.10551	0.0572698	0.0112089	0.154343	0.071709
chr4	2826144	2826234	2000380	0	+	0.566667	(0.523,0.58]	chr4	203974	6	INTRON	INTRON	SH3BP2	ENSG00000087266.17	ENST00000503393.8:ENST00000504294.5:ENST00000508385.5:ENST00000511663.5:ENST00000512014.5:ENST00000435136.8:ENST00000511185.5:ENST00000511747.6:ENST00000356331.9:ENST00000515737.5:ENST00000515183.5:ENST00000505941.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	122	2	4.67978	5.0768	5.47382	0.0244797	3.43179e-4	0.106683	0.0067057
chr2	186213320	186213420	1339438	0	-	0.39	(0.36,0.39]	chr2	142319	343	INTRON	INTRON	LINC01473	ENSG00000237877.7	ENST00000658984.1:ENST00000658990.1:ENST00000655126.1:ENST00000667839.1:ENST00000670612.1:ENST00000668985.1:ENST00000661574.1:ENST00000666677.1:ENST00000665629.1:ENST00000419719.2:ENST00000667056.1:ENST00000671599.1	lncRNA	lncRNA	lncRNA	lncRNA	1	118	2	4.12567	5.076605000000001	6.02754	0.0133452	0.00215781	0.0789398	0.024213
chr5	151126480	151126580	2791092	0	-	0.52	(0.485,0.523]	chr5	273882	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ANXA6	ENSG00000197043.14	ENST00000354546.10:ENST00000377751.9:ENST00000523714.5:ENST00000521512.5:ENST00000517486.5:ENST00000519644.6:ENST00000520054.1:ENST00000517707.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	53	2	4.75939	5.07654	5.39369	0.0275819	0.0172254	0.112782	0.0923809
chr17	55052942	55053042	6755887	0	+	0.29	[0,0.29]	chr17	681651	54	INTRON	INTRON	STXBP4	ENSG00000166263.13	ENST00000376352.6:ENST00000434978.6	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.68855	5.07652	5.46449	0.0554735	0.00299691	0.154188	0.030427
chr11	43367684	43367784	4843761	0	+	0.43	(0.419,0.45]	chr11	463315	82	INTRON	INTRON	TTC17	ENSG00000052841.15	ENST00000039989.9:ENST00000299240.10:ENST00000534347.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	4.91849	5.076280000000001	5.23407	0.0486006	0.0174488	0.145074	0.0928044
chr13	51753701	51753797	5605652	0	+	0.395833	(0.39,0.419]	chr13	552062	7	INTRON	INTRON	WDFY2	ENSG00000139668.9	ENST00000298125.7	protein_coding	protein_coding	protein_coding	protein_coding	2	323	2	4.87795	5.076155	5.27436	0.00238813	9.25091e-5	0.0308863	0.00258168
chr10	95332841	95332940	4732951	0	-	0.575758	(0.523,0.58]	chr10	451855	97	INTRON	INTRON	SORBS1	ENSG00000095637.23	ENST00000371227.8:ENST00000306402.10:ENST00000371249.6:ENST00000371247.7:ENST00000649911.1:ENST00000371246.6:ENST00000634504.1:ENST00000607232.5:ENST00000361941.7:ENST00000277982.9:ENST00000371245.7:ENST00000649575.1:ENST00000371241.5:ENST00000354106.7:ENST00000371239.5	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	4.13061	5.07599	6.02137	0.0533354	0.00992924	0.167062	0.0671959
chr15	67173302	67173402	6140164	0	+	0.55	(0.523,0.58]	chr15	603992	23	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000327367.9:ENST00000679624.1:ENST00000540846.6:ENST00000558894.5:ENST00000439724.7:ENST00000681239.1:ENST00000537194.6:ENST00000558827.1:ENST00000558428.5	protein_coding	protein_coding	protein_coding	protein_coding	0	65	2	4.13061	5.07599	6.02137	0.0533354	0.00992924	0.167062	0.0671959
chr13	98536796	98536896	5747889	0	-	0.66	(0.58,1]	chr13	563357	149	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.89007	5.075725	5.26138	0.021217	0.00872525	0.0996078	0.0612699
chr3	123072973	123073073	1546165	0	+	0.62	(0.58,1]	chr3	164134	50	INTRON	INTRON	PDIA5	ENSG00000065485.20	ENST00000316218.12:ENST00000489923.5:ENST00000484644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	4.89007	5.075725	5.26138	0.021217	0.00872525	0.0996078	0.0612699
chr7	98242872	98242966	3647997	0	-	0.595745	(0.58,1]	chr7	351148	13	INTRON	INTRON	TECPR1	ENSG00000205356.10	ENST00000447648.7:ENST00000471397.1:ENST00000463648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	50	2	4.89007	5.075725	5.26138	0.021217	0.00872525	0.0996078	0.0612699
chr9	134412890	134412989	4261562	0	+	0.59596	(0.58,1]	chr9	406352	34	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000481739.2:ENST00000356384.4:ENST00000672570.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.89007	5.075725	5.26138	0.021217	0.00872525	0.0996078	0.0612699
chr19	6228786	6228884	7321299	0	-	0.704082	(0.58,1]	chr19	756087	13	INTRON	INTRON	MLLT1	ENSG00000130382.9	ENST00000252674.9	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.94882	5.075525000000001	5.20223	0.0354433	0.00411607	0.127188	0.0374453
chr19	36850701	36850788	7249338	0	+	0.563218	(0.523,0.58]	chr19	743110	2	SS5_PROX	SS5_PROX:INTRON	ZNF345	ENSG00000251247.12	ENST00000589046.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.84569	5.07542	5.30515	0.0610722	0.00509102	0.158506	0.0433513
chr1	43981924	43982024	110978	0	+	0.59	(0.58,1]	chr1	13817	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	B4GALT2	ENSG00000117411.18	ENST00000434555.7:ENST00000372324.6:ENST00000481924.2:ENST00000497866.6:ENST00000485678.6:ENST00000356836.10:ENST00000309519.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	5.00585	5.07541	5.14497	0.0323732	0.00474658	0.121593	0.0413976
chr17	77349999	77350099	6803859	0	+	0.63	(0.58,1]	chr17	686742	258	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	5.00585	5.07541	5.14497	0.0323732	0.00474658	0.121593	0.0413976
chr2	239370003	239370102	1392412	0	-	0.616162	(0.58,1]	chr2	148759	167	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	5.00585	5.07541	5.14497	0.0323732	0.00474658	0.121593	0.0413976
chr2	240624190	240624289	1075185	0	+	0.585859	(0.58,1]	chr2	116654	48	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	5.00585	5.07541	5.14497	0.0323732	0.00474658	0.121593	0.0413976
chr5	148392419	148392519	2562853	0	+	0.37	(0.36,0.39]	chr5	254487	25	INTRON	INTRON	FBXO38	ENSG00000145868.17	ENST00000296701.10:ENST00000503613.5:ENST00000340253.10:ENST00000394370.7:ENST00000508326.5:ENST00000509411.5:ENST00000511080.5:ENST00000504971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	52	2	4.885	5.0750399999999996	5.26508	0.0697729	0.00795848	0.167185	0.0578938
chr11	70735889	70735989	5061640	0	-	0.54	(0.523,0.58]	chr11	492701	180	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	5.02927	5.074885	5.1205	0.0416463	0.0095202	0.136301	0.0650078
chr16	4818892	4818991	6544564	0	-	0.555556	(0.523,0.58]	chr16	651150	8	INTRON	INTRON	GLYR1	ENSG00000140632.17	ENST00000321919.14:ENST00000436648.9:ENST00000588732.5:ENST00000589389.5:ENST00000591451.5:ENST00000588297.5:ENST00000586095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	51	2	5.02927	5.074885	5.1205	0.0416463	0.0095202	0.136301	0.0650078
chr2	85408322	85408422	1211370	0	-	0.54	(0.523,0.58]	chr2	130295	2	SS5_PROX	SS5_PROX:INTRON	CAPG	ENSG00000042493.16	ENST00000263867.9:ENST00000409921.5:ENST00000409670.5:ENST00000409724.5:ENST00000447219.6:ENST00000449030.5:ENST00000439385.5:ENST00000459793.2:ENST00000409275.1:ENST00000415012.1:ENST00000491267.1:ENST00000479651.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	51	2	5.02927	5.074885	5.1205	0.0416463	0.0095202	0.136301	0.0650078
chr3	13025294	13025394	1689389	0	-	0.57	(0.523,0.58]	chr3	176542	28	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	5.02927	5.074885	5.1205	0.0416463	0.0095202	0.136301	0.0650078
chr1	149533689	149533778	238959	0	+	0.449438	(0.419,0.45]	chr1	26826	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF19	ENSG00000271383.8	ENST00000651566.2:ENST00000611931.4:ENST00000612881.4:ENST00000369227.7	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.78575	5.07485	5.36395	0.0407485	0.0224633	0.135868	0.108193
chr4	3178846	3178946	2003656	0	+	0.45	(0.419,0.45]	chr4	204461	4	SS5_PROX	SS5_PROX:INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000680291.1:ENST00000510626.5:ENST00000509043.1:ENST00000513326.5:ENST00000513639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	4.78575	5.07485	5.36395	0.0407485	0.0224633	0.135868	0.108193
chr2	235511434	235511534	1062710	0	+	0.52	(0.485,0.523]	chr2	115651	162	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	136	2	3.74439	5.07472	6.40505	0.0145578	2.98099e-4	0.0824156	0.00604717
chr10	28199852	28199952	4654399	0	-	0.39	(0.36,0.39]	chr10	444417	494	INTRON	INTRON	MPP7	ENSG00000150054.19	ENST00000683449.1:ENST00000375732.5:ENST00000337532.9:ENST00000496637.6:ENST00000375719.7:ENST00000441595.2:ENST00000481244.5:ENST00000474731.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	52	2	5.04893	5.0746649999999995	5.1004	0.0526991	0.0125348	0.14912	0.0765738
chr18	36051484	36051584	7145448	0	-	0.31	(0.29,0.33]	chr18	726802	103	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5:ENST00000589050.1:ENST00000592674.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	0	51	2	4.85285	5.074555	5.29626	0.0567079	0.005619	0.154343	0.0462026
chr2	72317467	72317567	1183096	0	-	0.33	(0.29,0.33]	chr2	128650	542	INTRON	INTRON	EXOC6B	ENSG00000144036.16	ENST00000272427.11:ENST00000490919.5:ENST00000471335.5:ENST00000634650.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.85285	5.074555	5.29626	0.0567079	0.005619	0.154343	0.0462026
chr12	132950762	132950861	5542039	0	-	0.40404	(0.39,0.419]	chr12	547064	21	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	119	2	4.23104	5.073980000000001	5.91692	0.0162442	0.0016534	0.0873195	0.0202545
chr7	100634551	100634650	3654952	0	-	0.444444	(0.419,0.45]	chr7	352299	6	INTRON	INTRON	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	60	2	4.38804	5.073895	5.75975	0.0451818	0.0231013	0.154539	0.102982
chr11	70540030	70540130	5059673	0	-	0.52	(0.485,0.523]	chr11	492663	367	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	4.84611	5.07385	5.30159	0.0608067	0.00529578	0.158506	0.044517
chrX	65515856	65515952	8055032	0	-	0.5	(0.485,0.523]	chrX	840752	5	INTRON	INTRON	LAS1L	ENSG00000001497.18	ENST00000677056.1:ENST00000677969.1:ENST00000374811.8:ENST00000374807.9:ENST00000677834.1:ENST00000484069.1:ENST00000374804.9:ENST00000677986.1:ENST00000677087.1:ENST00000679056.1:ENST00000679261.1:ENST00000678074.1:ENST00000678705.1:ENST00000679277.1:ENST00000677154.1:ENST00000678547.1:ENST00000678956.1:ENST00000679116.1:ENST00000678848.1:ENST00000678173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	51	2	4.84611	5.07385	5.30159	0.0608067	0.00529578	0.158506	0.044517
chr16	952642	952742	6531559	0	-	0.58	(0.523,0.58]	chr16	648703	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1:ENST00000566609.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	56	2	4.5249	5.07374	5.62258	0.0266135	0.0193313	0.118113	0.0954446
chr13	32172367	32172467	5562372	0	+	0.41	(0.39,0.419]	chr13	548646	7	INTRON	INTRON	FRY	ENSG00000073910.23	ENST00000645780.1:ENST00000647500.1:ENST00000642040.1:ENST00000542859.6	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.04836	5.07371	5.09906	0.0535378	0.0126072	0.150319	0.0768036
chr7	149087549	149087648	3732035	0	-	0.414141	(0.39,0.419]	chr7	358564	65	INTRON	INTRON	ZNF786	ENSG00000197362.15	ENST00000491431.2:ENST00000316286.13	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.04836	5.07371	5.09906	0.0535378	0.0126072	0.150319	0.0768036
chrX	74239251	74239351	8068655	0	-	0.41	(0.39,0.419]	chrX	841740	63	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000641360.1:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1	lncRNA	lncRNA	lncRNA	lncRNA	0	52	2	5.04836	5.07371	5.09906	0.0535378	0.0126072	0.150319	0.0768036
chr9	129609678	129609777	4250927	0	+	0.646465	(0.58,1]	chr9	404743	1	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	3	206	2	3.25885	5.073639999999999	6.88843	0.00760392	2.76213e-5	0.0579698	0.00106056
chr16	81550280	81550380	6508796	0	+	0.54	(0.523,0.58]	chr16	645911	544	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	144	2	4.10968	5.07362	6.03756	0.0075776	7.92905e-4	0.0579104	0.0120621
chr1	1225724	1225821	380446	0	-	0.597938	(0.58,1]	chr1	42851	14	INTRON	INTRON	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000403997.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.88945	5.07338	5.25731	0.0388928	0.00358178	0.131324	0.0342681
chr12	132543918	132544017	5353055	0	+	0.676768	(0.58,1]	chr12	523670	156	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.88945	5.07338	5.25731	0.0388928	0.00358178	0.131324	0.0342681
chr16	4374087	4374187	6377883	0	+	0.61	(0.58,1]	chr16	630571	17	INTRON	INTRON	VASN	ENSG00000168140.5	ENST00000304735.4	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.88945	5.07338	5.25731	0.0388928	0.00358178	0.131324	0.0342681
chr11	70811268	70811368	5062396	0	-	0.51	(0.485,0.523]	chr11	492713	37	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	5.02573	5.0733250000000005	5.12092	0.0414411	0.00985879	0.136301	0.0664239
chr16	81629985	81630085	6509597	0	+	0.51	(0.485,0.523]	chr16	645926	79	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	5.02573	5.0733250000000005	5.12092	0.0414411	0.00985879	0.136301	0.0664239
chr16	29272413	29272512	6433561	0	+	0.585859	(0.58,1]	chr16	636745	203	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	1	137	2	4.35371	5.073270000000001	5.79283	0.00298077	8.4246e-4	0.0347875	0.0125912
chr1	165900997	165901097	263219	0	+	0.61	(0.58,1]	chr1	31081	26	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1:ENST00000462329.5:ENST00000464197.5:ENST00000469256.6:ENST00000470820.1:ENST00000463772.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	5.0607	5.07302	5.08534	0.029633	0.00549379	0.116079	0.0454065
chr12	132953252	132953351	5542064	0	-	0.606061	(0.58,1]	chr12	547064	46	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	49	2	5.0607	5.07302	5.08534	0.029633	0.00549379	0.116079	0.0454065
chrX	16830757	16830854	7849903	0	+	0.402062	(0.39,0.419]	chrX	823216	6	INTRON	INTRON	TXLNG	ENSG00000086712.13	ENST00000398155.4:ENST00000380122.10	protein_coding	protein_coding	protein_coding	protein_coding	2	323	2	4.90169	5.0728100000000005	5.24393	0.00228521	1.01072e-4	0.0302303	0.00276281
chr15	66985583	66985677	6307338	0	-	0.478723	(0.45,0.485]	chr15	621952	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000259347	ENSG00000259347.8	ENST00000670149.1:ENST00000692307.1:ENST00000665471.1:ENST00000655852.1:ENST00000558071.2:ENST00000558097.5	lncRNA	lncRNA	lncRNA	lncRNA	1	153	2	2.87326	5.072625	7.27199	0.033576	0.00115418	0.133139	0.0205679
chr13	113589242	113589342	5658892	0	+	0.58	(0.523,0.58]	chr13	555775	30	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	52	2	4.65157	5.072395	5.49322	0.0787008	0.00324246	0.175203	0.0319521
chr2	10346046	10346146	718859	0	+	0.52	(0.485,0.523]	chr2	84026	155	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	193	2	3.58473	5.072375	6.56002	0.00893682	1.90696e-4	0.0637469	0.0043642
chr12	26529451	26529551	5398518	0	-	0.44	(0.419,0.45]	chr12	528527	338	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	1	119	2	4.04936	5.07227	6.09518	0.0138177	0.0027809	0.0803169	0.0287781
chr8	133296690	133296736	4084297	0	-	0.5	(0.485,0.523]	chr8	388371	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000520943.5:ENST00000521544.5:ENST00000523892.5:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	515	2	5.00202	5.07225	5.14248	0.00761903	3.41555e-4	0.0561937	0.0105726
chr16	85231865	85231965	6515387	0	+	0.5	(0.485,0.523]	chr16	646377	41	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	56	2	4.52142	5.07221	5.623	0.0273555	0.0192139	0.119337	0.095424900000000007
chr12	30734667	30734767	5403861	0	-	0.32	(0.29,0.33]	chr12	529294	3	SS5_PROX	SS5_PROX:INTRON	CAPRIN2	ENSG00000110888.19	ENST00000537553.5:ENST00000695402.1:ENST00000298892.9:ENST00000454014.6:ENST00000687797.1:ENST00000695326.1:ENST00000548676.5:ENST00000433722.6:ENST00000395805.6:ENST00000690126.1:ENST00000684863.1:ENST00000695370.1:ENST00000695369.1:ENST00000542550.6:ENST00000695327.1:ENST00000686317.1:ENST00000695371.1:ENST00000695328.1:ENST00000695400.1:ENST00000695329.1:ENST00000540436.6:ENST00000695398.1:ENST00000694880.1:ENST00000688163.1:ENST00000692932.1:ENST00000540584.2:ENST00000695330.1:ENST00000690233.1:ENST00000695372.1:ENST00000695373.1:ENST00000695374.1:ENST00000417045.5:ENST00000537108.5:ENST00000689016.1:ENST00000538387.1:ENST00000690097.1:ENST00000534897.5:ENST00000541765.5:ENST00000543380.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	52	2	4.65868	5.0714950000000005	5.48431	0.0735584	0.00360762	0.17026	0.0342681
chr7	23392487	23392587	3552423	0	-	0.31	(0.29,0.33]	chr7	343200	295	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	52	2	4.65868	5.0714950000000005	5.48431	0.0735584	0.00360762	0.17026	0.0342681
chr10	7721777	7721877	4442134	0	+	0.55	(0.523,0.58]	chr10	425522	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ITIH2	ENSG00000151655.19	ENST00000358415.9:ENST00000379587.4	protein_coding	protein_coding	protein_coding	protein_coding	1	114	2	4.38556	5.07149	5.75742	0.0155135	8.02365e-4	0.0849828	0.0121806
chr2	156181390	156181490	1286643	0	-	0.48	(0.45,0.485]	chr2	138345	304	INTRON	INTRON	LINC01876	ENSG00000226383.7	ENST00000635799.1:ENST00000662073.1:ENST00000659502.1:ENST00000428651.2:ENST00000661513.1:ENST00000657334.1:ENST00000638047.1:ENST00000637554.1:ENST00000636956.1:ENST00000637665.1:ENST00000637476.1:ENST00000637324.1	lncRNA	lncRNA	lncRNA	lncRNA	0	52	2	4.7111	5.07141	5.43172	0.0781398	0.00440365	0.175203	0.0393688
chr2	72705507	72705607	1186995	0	-	0.38	(0.36,0.39]	chr2	128741	1295	INTRON	INTRON	EXOC6B	ENSG00000144036.16	ENST00000272427.11:ENST00000634650.1:ENST00000410104.1:ENST00000410112.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	128	2	4.6127	5.071285	5.52987	0.0287883	5.96463e-4	0.115991	0.00990739
chr9	133734899	133734998	4427932	0	-	0.686869	(0.58,1]	chr9	423136	3	INTRON	INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000427237.6:ENST00000298628.6	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.66416	5.071275	5.47839	0.0145198	0.0144381	0.0833845	0.0823104
chr11	70803721	70803820	5062320	0	-	0.444444	(0.419,0.45]	chr11	492707	48	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5:ENST00000460048.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	125	2	3.52905	5.07122	6.61339	0.00949141	0.0059347	0.0650078	0.0506158
chr6	16761097	16761197	3104465	0	-	0.53	(0.523,0.58]	chr6	300922	4	SS5_PROX	SS5_PROX:INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000473388.6:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1:ENST00000467008.5:ENST00000498374.1:ENST00000492857.1:ENST00000479680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	119	2	3.51663	5.071115000000001	6.6256	0.00782908	0.00333843	0.0574276	0.0368376
chr11	72091839	72091939	5067989	0	-	0.53	(0.523,0.58]	chr11	493066	50	INTRON	INTRON	LAMTOR1	ENSG00000149357.10	ENST00000545249.5	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.83424	5.071095	5.30795	0.0315825	0.0144272	0.120781	0.0833845
chr3	61906750	61906850	1490069	0	+	0.49	(0.485,0.523]	chr3	160092	1355	INTRON	INTRON	PTPRG	ENSG00000144724.20	ENST00000474889.6:ENST00000295874.14	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.65198	5.070819999999999	5.48966	0.0783889	0.0033837199999999998	0.175203	0.0328791
chr8	28814211	28814311	3959053	0	-	0.49	(0.485,0.523]	chr8	378168	2	INTRON	INTRON	INTS9	ENSG00000104299.15	ENST00000416984.6:ENST00000521022.6:ENST00000523303.5:ENST00000521777.5:ENST00000522363.5:ENST00000520983.5:ENST00000523436.5:ENST00000518510.5:ENST00000524081.5:ENST00000520437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	4.65198	5.070819999999999	5.48966	0.0783889	0.0033837199999999998	0.175203	0.0328791
chr2	235521725	235521825	1062813	0	+	0.35	(0.33,0.36]	chr2	115651	265	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	428	2	4.62942	5.07079	5.51216	5.80267e-4	1.3888e-4	0.0141176	0.00348073
chr3	65921963	65922063	1814698	0	-	0.3	(0.29,0.33]	chr3	187310	144	INTRON	INTRON	MAGI1:MAGI1-IT1	ENSG00000151276.24:ENSG00000272610.1	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5:ENST00000460754.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	1	115	2	3.69617	5.070525	6.44488	0.00527084	0.00411483	0.044517	0.0414433
chr2	7038831	7038930	712660	0	+	0.474747	(0.45,0.485]	chr2	83316	83	INTRON	INTRON	RNF144A	ENSG00000151692.15	ENST00000320892.11:ENST00000467276.5:ENST00000432850.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	4.49786	5.07033	5.6428	0.101311	0.00265386	0.196131	0.027979
chr16	1727648	1727747	6371212	0	+	0.616162	(0.58,1]	chr16	628837	26	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000685565.1:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	123	2	3.5406	5.070145	6.59969	0.0154024	7.15008e-5	0.0849828	0.00213784
chr3	13025894	13025994	1689395	0	-	0.6	(0.58,1]	chr3	176542	34	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	2	142	2	3.33506	5.070065	6.80507	0.00321851	0.00101308	0.0319521	0.0191342
chr20	34566350	34566450	7547091	0	-	0.65	(0.58,1]	chr20	787854	50	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	1	123	2	3.79598	5.069925	6.34387	0.00940557	1.61506e-4	0.0653252	0.00387712
chr13	113028151	113028249	5655910	0	+	0.428571	(0.419,0.45]	chr13	555157	12	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486806.1:ENST00000473345.5	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.98767	5.069905	5.15214	0.0669167	0.0109324	0.16272	0.0706366
chr2	160417876	160417976	1292728	0	-	0.44	(0.419,0.45]	chr2	138803	18	INTRON	INTRON	RBMS1	ENSG00000153250.21	ENST00000348849.8:ENST00000474820.5:ENST00000491781.5:ENST00000477486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	52	2	4.98767	5.069905	5.15214	0.0669167	0.0109324	0.16272	0.0706366
chr1	823009	823109	379740	0	-	0.52	(0.485,0.523]	chr1	42663	445	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000634337.2:ENST00000635509.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	52	2	4.83072	5.069545	5.30837	0.0314138	0.0148956	0.12069	0.0847741
chr12	122098161	122098261	5343570	0	+	0.51	(0.485,0.523]	chr12	521864	185	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.83072	5.069545	5.30837	0.0314138	0.0148956	0.12069	0.0847741
chr3	12963912	12964012	1688768	0	-	0.51	(0.485,0.523]	chr3	176520	29	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	4.83072	5.069545	5.30837	0.0314138	0.0148956	0.12069	0.0847741
chr13	98575194	98575294	5748273	0	-	0.38	(0.36,0.39]	chr13	563357	533	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	4.98942	5.0695	5.14958	0.0493212	0.0141427	0.146207	0.0833845
chr1	26854038	26854135	69799	0	+	0.649485	(0.58,1]	chr1	7824	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ZDHHC18	ENSG00000204160.12	ENST00000374142.9:ENST00000488397.3	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.74346	5.069459999999999	5.39546	0.0168207	0.0121457	0.0884836	0.0754623
chr10	79107526	79107626	4532430	0	+	0.63	(0.58,1]	chr10	432420	379	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.74346	5.069459999999999	5.39546	0.0168207	0.0121457	0.0884836	0.0754623
chr16	952179	952278	6531554	0	-	0.59596	(0.58,1]	chr16	648701	47	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.74346	5.069459999999999	5.39546	0.0168207	0.0121457	0.0884836	0.0754623
chr16	81547381	81547481	6508767	0	+	0.6	(0.58,1]	chr16	645911	515	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.74346	5.069459999999999	5.39546	0.0168207	0.0121457	0.0884836	0.0754623
chr17	82723386	82723485	6818119	0	+	0.686869	(0.58,1]	chr17	689151	1	INTRON	INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5:ENST00000571482.2:ENST00000576363.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	51	2	4.74346	5.069459999999999	5.39546	0.0168207	0.0121457	0.0884836	0.0754623
chr8	11837098	11837197	3760687	0	+	0.585859	(0.58,1]	chr8	361190	51	INTRON	INTRON	FDFT1	ENSG00000079459.13	ENST00000538689.4:ENST00000615631.4:ENST00000618539.4:ENST00000623368.3:ENST00000446331.6:ENST00000443614.6:ENST00000220584.9:ENST00000525607.5:ENST00000525900.5:ENST00000528812.5:ENST00000622850.2:ENST00000530664.5:ENST00000525954.5:ENST00000528643.5:ENST00000525777.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.74346	5.069459999999999	5.39546	0.0168207	0.0121457	0.0884836	0.0754623
chr12	50135265	50135365	5228245	0	+	0.57	(0.523,0.58]	chr12	507568	116	INTRON	INTRON	ENSG00000272368	ENSG00000272368.2	ENST00000548468.2	lncRNA	lncRNA	lncRNA	lncRNA	1	111	2	3.98894	5.069225	6.14951	0.00793972	0.00237791	0.0596361	0.026
chr19	33443912	33444012	7365277	0	-	0.57	(0.523,0.58]	chr19	763415	299	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000590731.6:ENST00000609145.5:ENST00000588719.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	51	2	4.78384	5.069179999999999	5.35452	0.0663135	0.00453096	0.162385	0.0400651
chr19	33484424	33484523	7365691	0	-	0.525253	(0.523,0.58]	chr19	763440	60	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000590731.6:ENST00000609145.5:ENST00000588719.5:ENST00000651646.1:ENST00000590755.6:ENST00000590408.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	4.78384	5.069179999999999	5.35452	0.0663135	0.00453096	0.162385	0.0400651
chr6	82082468	82082568	3190783	0	-	0.4	(0.39,0.419]	chr6	309375	224	INTRON	INTRON	LINC02542	ENSG00000226453.3	ENST00000667666.1:ENST00000663543.1:ENST00000668303.1:ENST00000660637.1:ENST00000668266.1:ENST00000666226.1	lncRNA	lncRNA	lncRNA	lncRNA	0	54	2	4.55943	5.0691749999999995	5.57892	0.104562	0.00396694	0.19835	0.0368027
chr1	211300772	211300870	333537	0	+	0.408163	(0.39,0.419]	chr1	37472	47	INTRON	INTRON	RCOR3	ENSG00000117625.14	ENST00000367006.8:ENST00000419091.7:ENST00000452621.6:ENST00000528926.5:ENST00000367005.8:ENST00000534460.5:ENST00000529763.5:ENST00000485186.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.82439	5.06912	5.31385	0.0762206	0.0071966	0.174484	0.0543014
chr20	37189346	37189445	7471702	0	+	0.393939	(0.39,0.419]	chr20	777984	46	INTRON	INTRON	RPN2	ENSG00000118705.17	ENST00000456102.5:ENST00000373622.9:ENST00000373632.8:ENST00000237530.11:ENST00000462163.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.82439	5.06912	5.31385	0.0762206	0.0071966	0.174484	0.0543014
chr22	35803094	35803194	7803564	0	-	0.41	(0.39,0.419]	chr22	817762	210	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000405409.6:ENST00000695803.1:ENST00000449924.6:ENST00000414461.6:ENST00000262829.11:ENST00000397303.6:ENST00000695804.1:ENST00000359369.8:ENST00000695805.1:ENST00000695806.1:ENST00000416721.6:ENST00000695807.1:ENST00000473487.6:ENST00000408983.2:ENST00000491982.1:ENST00000397305.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	4.82439	5.06912	5.31385	0.0762206	0.0071966	0.174484	0.0543014
chr3	73055940	73056040	1503324	0	+	0.4	(0.39,0.419]	chr3	160786	82	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	4.82439	5.06912	5.31385	0.0762206	0.0071966	0.174484	0.0543014
chr11	70702362	70702462	5061304	0	-	0.48	(0.45,0.485]	chr11	492696	32	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.9538	5.06909	5.18438	0.0569772	0.00773818	0.154343	0.0568726
chr12	76869555	76869655	5458349	0	-	0.42	(0.419,0.45]	chr12	536952	29	INTRON	INTRON	CSRP2	ENSG00000175183.10	ENST00000311083.10:ENST00000552330.5:ENST00000546966.5:ENST00000547435.1:ENST00000547557.1:ENST00000551725.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	52	2	4.9329	5.068989999999999	5.20508	0.0716557	0.00979452	0.168159	0.0664239
chr16	16274075	16274175	6408425	0	+	0.42	(0.419,0.45]	chr16	633348	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NOMO3	ENSG00000103226.19	ENST00000676846.1:ENST00000399336.9:ENST00000677912.1:ENST00000677777.1:ENST00000678192.1:ENST00000678393.1:ENST00000678538.1:ENST00000679086.1:ENST00000574894.2:ENST00000678080.1:ENST00000677260.1:ENST00000676550.1:ENST00000263012.10:ENST00000575225.5:ENST00000677781.1:ENST00000677163.1:ENST00000678148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	52	2	4.9329	5.068989999999999	5.20508	0.0716557	0.00979452	0.168159	0.0664239
chr3	141549273	141549373	1589082	0	+	0.45	(0.419,0.45]	chr3	167818	83	INTRON	INTRON	RASA2	ENSG00000155903.14	ENST00000286364.9	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.9329	5.068989999999999	5.20508	0.0716557	0.00979452	0.168159	0.0664239
chr1	51617920	51618020	122577	0	+	0.46	(0.45,0.485]	chr1	15322	3	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	5.00859	5.068985	5.12938	0.052901	0.00873194	0.14912	0.0612699
chr13	113050020	113050120	5656135	0	+	0.46	(0.45,0.485]	chr13	555180	28	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	5.00859	5.068985	5.12938	0.052901	0.00873194	0.14912	0.0612699
chr19	45046663	45046762	7270074	0	+	0.464646	(0.45,0.485]	chr19	746627	60	INTRON	INTRON	CLASRP	ENSG00000104859.15	ENST00000221455.8:ENST00000391953.8:ENST00000591410.5:ENST00000592056.5:ENST00000391952.7:ENST00000588936.5:ENST00000544944.6:ENST00000587112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	51	2	5.00859	5.068985	5.12938	0.052901	0.00873194	0.14912	0.0612699
chr7	149612403	149612503	3733298	0	-	0.46	(0.45,0.485]	chr7	358677	484	INTRON	INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5:ENST00000481762.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	51	2	5.00859	5.068985	5.12938	0.052901	0.00873194	0.14912	0.0612699
chr3	13200625	13200725	1691148	0	-	0.64	(0.58,1]	chr3	176566	361	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.82753	5.068945	5.31036	0.0427798	0.00312721	0.13762	0.0311915
chr5	31511869	31511966	2629944	0	-	0.43299	(0.419,0.45]	chr5	260962	3	INTRON	INTRON	DROSHA	ENSG00000113360.17	ENST00000344624.8:ENST00000511367.6:ENST00000513349.5:ENST00000512076.1	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.04043	5.068804999999999	5.09718	0.0625897	0.012235	0.160305	0.0757339
chr17	59643077	59643177	6767356	0	+	0.39	(0.36,0.39]	chr17	682607	226	INTRON	INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000580081.1:ENST00000579456.5:ENST00000584313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	4.72331	5.068605	5.4139	0.0340874	0.0236929	0.125059	0.111208
chr11	71200019	71200119	5066303	0	-	0.41	(0.39,0.419]	chr11	492802	248	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000482659.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	4.98886	5.068545	5.14823	0.0501234	0.0142222	0.147892	0.0833845
chr8	125129517	125129614	3915217	0	+	0.412371	(0.39,0.419]	chr8	374040	21	INTRON	INTRON	NSMCE2	ENSG00000156831.8	ENST00000523741.5:ENST00000517532.5:ENST00000520866.5:ENST00000519010.5:ENST00000287437.8:ENST00000522563.5:ENST00000523824.5:ENST00000518146.5:ENST00000523549.1:ENST00000519712.1:ENST00000517315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	4.98886	5.068545	5.14823	0.0501234	0.0142222	0.147892	0.0833845
chr17	61395845	61395945	6939758	0	-	0.67	(0.58,1]	chr17	707563	5	INTRON	INTRON	TBX2-AS1	ENSG00000267280.6	ENST00000591313.6:ENST00000590421.1:ENST00000592009.1:ENST00000589814.5	lncRNA	lncRNA	lncRNA	lncRNA	1	106	2	4.47001	5.068495	5.66698	0.0102927	4.15967e-4	0.0684871	0.00768537
chr2	3300391	3300491	1081111	0	-	0.55	(0.523,0.58]	chr2	117633	177	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.96714	5.068415	5.16969	0.0387762	0.0108948	0.131324	0.0706366
chr21	5106565	5106665	7635252	0	-	0.56	(0.523,0.58]	chr21	798621	265	INTRON	INTRON	ENSG00000280071	ENSG00000280071.4	ENST00000624810.3:ENST00000625036.3	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.96714	5.068415	5.16969	0.0387762	0.0108948	0.131324	0.0706366
chr18	76402781	76402881	7179147	0	-	0.61	(0.58,1]	chr18	730080	221	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	5.02314	5.068345	5.11355	0.0271806	0.00638322	0.112113	0.0501889
chr9	134338636	134338736	4260809	0	+	0.66	(0.58,1]	chr9	406311	116	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	5.02314	5.068345	5.11355	0.0271806	0.00638322	0.112113	0.0501889
chr1	178438025	178438125	289996	0	+	0.32	(0.29,0.33]	chr1	32982	171	INTRON	INTRON	RASAL2	ENSG00000075391.18	ENST00000367649.8:ENST00000696605.1:ENST00000462775.5:ENST00000696606.1:ENST00000696607.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.79099	5.0683050000000005	5.34562	0.061706	0.00501126	0.158854	0.0429092
chr21	38815181	38815281	7620700	0	+	0.43	(0.419,0.45]	chr21	796168	2	SS5_PROX	SS5_PROX:INTRON	ETS2	ENSG00000157557.13	ENST00000360214.8:ENST00000667466.1:ENST00000360938.8:ENST00000666778.1:ENST00000653642.1:ENST00000662305.1:ENST00000456966.1	protein_coding	protein_coding	protein_coding	protein_coding	1	153	2	4.00447	5.06809	6.13171	0.0122777	0.00115219	0.0755681	0.0157112
chr3	149172297	149172396	1939138	0	-	0.383838	(0.36,0.39]	chr3	197297	59	INTRON	INTRON	CP	ENSG00000047457.14	ENST00000481169.5:ENST00000479771.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	56	2	4.56926	5.0679	5.56654	0.031369	0.0272676	0.127822	0.112327
chr19	47227415	47227495	7392354	0	-	0.5	(0.485,0.523]	chr19	768098	3	INTRON	INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.78426	5.06761	5.35096	0.0660335	0.0047171	0.162385	0.0413976
chrX	110108079	110108179	7934682	0	+	0.49	(0.485,0.523]	chrX	830394	255	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000461715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.78426	5.06761	5.35096	0.0660335	0.0047171	0.162385	0.0413976
chr12	10961927	10962027	5370502	0	-	0.45	(0.419,0.45]	chr12	526802	228	INTRON	INTRON	ENSG00000275778:PRH1:TAS2R14	ENSG00000275778.2:ENSG00000231887.8:ENSG00000212127.6	ENST00000536668.2:ENST00000535024.6:ENST00000539853.5:ENST00000541977.5:ENST00000536086.2:ENST00000546317.1:ENST00000381852.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	53	2	4.69033	5.0672	5.44407	0.0958674	0.00585948	0.189038	0.0474117
chr1	43582894	43582981	107274	0	+	0.609195	(0.58,1]	chr1	13215	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000467464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	128	2	4.10163	5.06717	6.03271	0.00506731	4.18183e-4	0.0465789	0.00770005
chr15	76652175	76652275	6329349	0	-	0.47	(0.45,0.485]	chr15	624252	300	INTRON	INTRON	SCAPER	ENSG00000140386.13	ENST00000563290.6:ENST00000538941.6:ENST00000324767.11:ENST00000303521.10:ENST00000564757.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	51	2	4.89685	5.0671	5.23735	0.0614781	0.00687715	0.158506	0.0526888
chr11	70659227	70659327	5060867	0	-	0.47	(0.45,0.485]	chr11	492672	44	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	55	2	4.59225	5.067055	5.54186	0.0259502	0.0243502	0.116361	0.106588
chr2	231046581	231046681	1047590	0	+	0.46	(0.45,0.485]	chr2	114052	3	SS3_PROX	SS3_PROX:INTRON	C2orf72	ENSG00000204128.6	ENST00000373640.5:ENST00000477463.1:ENST00000463834.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	55	2	4.59225	5.067055	5.54186	0.0259502	0.0243502	0.116361	0.106588
chr2	3298095	3298195	1081088	0	-	0.41	(0.39,0.419]	chr2	117633	154	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	118	2	4.18907	5.067045	5.94502	0.0155393	0.00184231	0.0849828	0.0217471
chr5	21546774	21546874	2393048	0	+	0.38	(0.36,0.39]	chr5	239084	21	INTRON	INTRON	GUSBP1	ENSG00000183666.18	ENST00000607545.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	59	2	4.39677	5.066940000000001	5.73711	0.0422707	0.0210765	0.149195	0.0996078
chr19	5900539	5900637	7318276	0	-	0.510204	(0.485,0.523]	chr19	755741	32	INTRON	INTRON	NDUFA11	ENSG00000174886.14	ENST00000418389.6:ENST00000308961.5:ENST00000592634.5:ENST00000593233.1:ENST00000650663.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.96361	5.066865	5.17012	0.038581	0.0112713	0.131324	0.071709
chr20	35011934	35012029	7550447	0	-	0.505263	(0.485,0.523]	chr20	788282	13	INTRON	INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.96361	5.066865	5.17012	0.038581	0.0112713	0.131324	0.071709
chr2	62730794	62730894	814205	0	+	0.48	(0.45,0.485]	chr2	92078	231	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000449820.5:ENST00000426940.5:ENST00000413434.5:ENST00000405482.5:ENST00000427809.5:ENST00000494958.1:ENST00000472809.5:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	5.06138	5.066789999999999	5.0722	0.0492008	0.00988295	0.146142	0.0664239
chr14	69922753	69922853	5871596	0	+	0.45	(0.419,0.45]	chr14	573303	426	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000555917.1:ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	4.85365	5.066165	5.27868	0.0457732	0.0197641	0.142336	0.100774
chr5	60333982	60334082	2677493	0	-	0.45	(0.419,0.45]	chr5	264422	300	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000502484.6:ENST00000509355.5:ENST00000506024.5:ENST00000506510.6:ENST00000511382.1:ENST00000505507.6:ENST00000514552.5:ENST00000515835.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	53	2	4.85365	5.066165	5.27868	0.0457732	0.0197641	0.142336	0.100774
chr7	47379912	47380012	3587591	0	-	0.42	(0.419,0.45]	chr7	346036	99	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	4.85365	5.066165	5.27868	0.0457732	0.0197641	0.142336	0.100774
chr8	98701670	98701770	4024937	0	-	0.44	(0.419,0.45]	chr8	384381	501	INTRON	INTRON	STK3	ENSG00000104375.17	ENST00000617590.1:ENST00000419617.7:ENST00000523601.5:ENST00000518165.5:ENST00000521649.5:ENST00000424861.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	4.85365	5.066165	5.27868	0.0457732	0.0197641	0.142336	0.100774
chr16	85235265	85235365	6515421	0	+	0.74	(0.58,1]	chr16	646377	75	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	56	2	4.3962	5.06611	5.73602	0.0250928	0.00904546	0.114418	0.0637469
chr17	741000	741100	6663980	0	+	0.43	(0.419,0.45]	chr17	667329	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TLCD3A	ENSG00000167695.15	ENST00000572018.5:ENST00000301324.8:ENST00000308278.13:ENST00000570699.1:ENST00000577008.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.87598	5.066065	5.25615	0.0768574	0.00879729	0.174882	0.0615125
chr6	37896680	37896780	2909611	0	+	0.42	(0.419,0.45]	chr6	285643	763	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.87598	5.066065	5.25615	0.0768574	0.00879729	0.174882	0.0615125
chr3	12576138	12576232	1414146	0	+	0.393617	(0.39,0.419]	chr3	151728	13	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MKRN2	ENSG00000075975.17	ENST00000677816.1:ENST00000677941.1:ENST00000676544.1:ENST00000677237.1:ENST00000679143.1:ENST00000676701.1:ENST00000170447.12:ENST00000411987.5:ENST00000448482.1:ENST00000677142.1:ENST00000676541.1:ENST00000677798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	59	2	4.39622	5.0659849999999995	5.73575	0.042449	0.0215144	0.149195	0.100612
chr6	56483825	56483924	3152447	0	-	0.363636	(0.36,0.39]	chr6	307525	4	EXON_MRNA	EXON_MRNA:INTRON	DST	ENSG00000151914.22	ENST00000244364.10:ENST00000312431.10:ENST00000421834.6:ENST00000680361.1:ENST00000370788.6:ENST00000520645.6:ENST00000651790.1:ENST00000340834.10:ENST00000361203.7:ENST00000487754.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	120	2	3.65573	5.065925	6.47612	0.0067964	0.00632423	0.0524897	0.0524192
chr2	235551632	235551732	1063114	0	+	0.46	(0.45,0.485]	chr2	115656	267	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	4.74641	5.065720000000001	5.38503	0.0308908	0.0193126	0.119556	0.0994526
chr15	78068416	78068516	6336534	0	-	0.43	(0.419,0.45]	chr15	624607	24	INTRON	INTRON	TBC1D2B	ENSG00000167202.12	ENST00000300584.8:ENST00000409931.7	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.04004	5.065685	5.09133	0.0586308	0.0137308	0.155565	0.0814223
chr4	88607148	88607248	2082529	0	+	0.45	(0.419,0.45]	chr4	212513	7	INTRON	INTRON	HERC3	ENSG00000138641.18	ENST00000431413.5:ENST00000402738.6:ENST00000422770.5:ENST00000407637.5:ENST00000426683.5:ENST00000452979.5:ENST00000264345.7	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	5.04004	5.065685	5.09133	0.0586308	0.0137308	0.155565	0.0814223
chr21	35942460	35942560	7666388	0	-	0.41	(0.39,0.419]	chr21	801118	776	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000475045.6	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.30157	5.0653749999999995	5.82918	0.0496288	0.0186329	0.160725	0.0932878
chr17	39701108	39701208	6731655	0	+	0.53	(0.523,0.58]	chr17	676735	4	INTRON	INTRON	ERBB2	ENSG00000141736.14	ENST00000584601.5:ENST00000578199.5:ENST00000406381.6:ENST00000541774.5:ENST00000445658.6:ENST00000584450.5:ENST00000269571.10:ENST00000582788.5:ENST00000582648.5:ENST00000578373.5:ENST00000584908.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	59	2	4.34118	5.06521	5.78924	0.0372357	0.0147166	0.139793	0.0826843
chr12	50435924	50436024	5228998	0	+	0.47	(0.45,0.485]	chr12	507636	3	SS5_PROX	SS5_PROX:INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1	protein_coding	protein_coding	protein_coding	protein_coding	1	113	2	3.9881	5.0646450000000005	6.14119	0.00917101	0.0026335	0.064285	0.0278798
chr22	20123573	20123667	7686878	0	+	0.62766	(0.58,1]	chr22	804213	5	INTRON	INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000331821.7:ENST00000411892.5:ENST00000423859.5:ENST00000418705.2:ENST00000448394.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	340	2	4.93432	5.0646249999999995	5.19493	4.55617e-4	1.95107e-5	0.0122859	8.25524e-4
chr15	90034626	90034726	6183891	0	+	0.64	(0.58,1]	chr15	608320	274	INTRON	INTRON	ZNF710	ENSG00000140548.10	ENST00000268154.9:ENST00000559419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.62403	5.064500000000001	5.50497	0.0578275	0.00187297	0.154343	0.0219434
chr9	136084709	136084808	4432925	0	-	0.666667	(0.58,1]	chr9	423650	338	INTRON	INTRON	NACC2	ENSG00000148411.8	ENST00000277554.4	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.62403	5.064500000000001	5.50497	0.0578275	0.00187297	0.154343	0.0219434
chr1	42177727	42177826	454947	0	-	0.454545	(0.45,0.485]	chr1	54686	13	UTR3	UTR3:EXON_MRNA	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000372571.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6	protein_coding	protein_coding	protein_coding	protein_coding	8	735	2	3.93108	5.06444	6.1978	1.60929e-4	1.36687e-4	0.00649687	0.00387712
chr3	38358249	38358349	1445610	0	+	0.5	(0.485,0.523]	chr3	154173	12	INTRON	INTRON	XYLB	ENSG00000093217.11	ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	120	2	3.46766	5.064265	6.66087	0.0089247	0.00309962	0.0620271	0.0355173
chr20	58689541	58689640	7498573	0	+	0.494949	(0.485,0.523]	chr20	781977	102	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1:ENST00000413559.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	3	182	2	3.63131	5.06416	6.49701	0.00420849	0.00102788	0.0421454	0.0144471
chr2	232900961	232901061	1383848	0	-	0.5	(0.485,0.523]	chr2	147953	2	SS5_PROX	SS5_PROX:INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000416114.3:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	111	2	4.10606	5.06393	6.0218	0.00985907	0.00177809	0.0670775	0.0212512
chr12	42219562	42219661	5416911	0	-	0.484848	(0.45,0.485]	chr12	530176	67	INTRON	INTRON	YAF2	ENSG00000015153.15	ENST00000534854.7:ENST00000327791.8:ENST00000380790.4:ENST00000552109.5:ENST00000547622.5:ENST00000547351.5:ENST00000551268.5:ENST00000548661.5:ENST00000546726.5:ENST00000547724.1:ENST00000552928.5:ENST00000548917.1:ENST00000547254.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	114	2	4.22618	5.063925	5.90167	0.0137135	0.00140627	0.0799457	0.0180646
chr13	75432980	75433080	5727514	0	-	0.35	(0.33,0.36]	chr13	561722	558	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.70894	5.06387	5.4188	0.0798152	0.00513015	0.176933	0.0435186
chr16	20875163	20875262	6563344	0	-	0.474747	(0.45,0.485]	chr16	654538	63	INTRON	INTRON	ERI2:DCUN1D3	ENSG00000196678.14:ENSG00000188215.10	ENST00000564349.5:ENST00000324344.9	protein_coding	protein_coding	protein_coding	protein_coding	1	113	2	4.0881	5.063855	6.03961	0.0108974	0.00202979	0.0707085	0.0232814
chr1	156096655	156096754	250850	0	+	0.515152	(0.485,0.523]	chr1	29445	25	INTRON	INTRON	LMNA	ENSG00000160789.24	ENST00000502751.5:ENST00000368301.6:ENST00000676385.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	4.33772	5.063695	5.78967	0.03818	0.0146211	0.140822	0.0826064
chr14	68900661	68900761	5999346	0	-	0.56	(0.523,0.58]	chr14	588705	4	SS5_PROX	SS5_PROX:INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	111	2	3.90605	5.06366	6.22127	0.00699217	0.00295607	0.0555241	0.0300958
chr10	47533581	47533680	4680518	0	-	0.525253	(0.523,0.58]	chr10	446443	97	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	3	178	2	3.36676	5.063465	6.76017	0.00258949	0.0021166	0.0321874	0.0239744
chr7	223344	223444	3305888	0	+	0.59	(0.58,1]	chr7	320161	140	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	104	2	4.35759	5.063465	5.76934	0.00849371	5.87814e-4	0.0617717	0.009801
chr5	95905232	95905331	2731302	0	-	0.292929	(0.29,0.33]	chr5	268236	38	INTRON	INTRON	ELL2	ENSG00000118985.16	ENST00000237853.9:ENST00000513343.1	protein_coding	protein_coding	protein_coding	protein_coding	1	134	2	3.79851	5.06314	6.32777	0.0125054	3.99124e-4	0.0761905	0.00744627
chr17	77374266	77374357	6804105	0	+	0.604396	(0.58,1]	chr17	686749	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1:ENST00000423034.6:ENST00000590059.5:ENST00000587514.1:ENST00000590586.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	50	2	4.81862	5.063045000000001	5.30747	0.0196049	0.0102696	0.0955413	0.0678072
chr4	1327226	1327326	1995311	0	+	0.65	(0.58,1]	chr4	203265	2	SS3_PROX	SS3_PROX:INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	50	2	4.81862	5.063045000000001	5.30747	0.0196049	0.0102696	0.0955413	0.0678072
chr1	43557629	43557729	107015	0	+	0.47	(0.45,0.485]	chr1	13192	33	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.83755	5.063005	5.28846	0.06646	0.00612862	0.162385	0.0489549
chr10	1009999	1010080	4437453	0	+	0.481481	(0.45,0.485]	chr10	424698	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GTPBP4	ENSG00000107937.19	ENST00000360803.9:ENST00000491635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.83755	5.063005	5.28846	0.06646	0.00612862	0.162385	0.0489549
chr13	32179533	32179574	5562447	0	+	0.463415	(0.45,0.485]	chr13	548669	1	SS3_PROX	SS3_PROX:INTRON	FRY	ENSG00000073910.23	ENST00000645780.1:ENST00000647500.1:ENST00000642040.1:ENST00000542859.6	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.83755	5.063005	5.28846	0.06646	0.00612862	0.162385	0.0489549
chr7	35775408	35775508	3576393	0	-	0.36	(0.33,0.36]	chr7	344790	111	INTRON	INTRON	SEPTIN7-DT	ENSG00000228878.9	ENST00000437235.7:ENST00000412856.6:ENST00000670426.1:ENST00000665516.1:ENST00000658573.1:ENST00000424194.1	lncRNA	lncRNA	lncRNA	lncRNA	0	52	2	4.8729	5.06291	5.25292	0.0384256	0.0164782	0.131324	0.091341
chr11	9464070	9464170	4795776	0	+	0.38	(0.36,0.39]	chr11	459839	2	SS5_PROX	SS5_PROX:INTRON	ZNF143	ENSG00000166478.10	ENST00000531943.5:ENST00000396604.5:ENST00000530463.5:ENST00000533542.5:ENST00000532577.5:ENST00000396597.7:ENST00000438144.6:ENST00000396602.7:ENST00000496276.5:ENST00000526657.5:ENST00000299606.6:ENST00000534265.5:ENST00000412390.6:ENST00000414370.5:ENST00000417726.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	4.79458	5.06282	5.33106	0.0383628	0.0207145	0.131324	0.102713
chr14	95414437	95414537	6048921	0	-	0.61	(0.58,1]	chr14	593438	73	UTR3	UTR3:EXON_MRNA	SYNE3	ENSG00000176438.13	ENST00000682763.1:ENST00000557275.5	protein_coding	protein_coding	protein_coding	protein_coding	3	164	2	3.45493	5.062695	6.67046	0.00135763	0.00117058	0.0224546	0.0157899
chr7	44455280	44455380	3584747	0	-	0.49	(0.485,0.523]	chr7	345547	272	INTRON	INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000472246.5:ENST00000464812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	151	2	3.8805	5.062675	6.24485	0.00665813	9.65418e-4	0.0540577	0.0138438
chr3	184319506	184319588	1643923	0	+	0.634146	(0.58,1]	chr3	172597	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000444134.5:ENST00000442406.5:ENST00000450424.5:ENST00000421110.5:ENST00000435046.7:ENST00000382330.7:ENST00000413967.5:ENST00000426123.5:ENST00000346169.7:ENST00000350481.9:ENST00000440448.5:ENST00000427141.6:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000456033.5:ENST00000411531.5:ENST00000444861.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	103	2	3.95573	5.06259	6.16945	0.00387582	0.00191878	0.0401256	0.0223755
chr10	79166028	79166128	4533017	0	+	0.57	(0.523,0.58]	chr10	432438	35	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	3	411	2	4.62846	5.06232	5.49618	0.00116595	2.78788e-5	0.0206836	0.00106752
chr6	31651861	31651960	3119041	0	-	0.515152	(0.485,0.523]	chr6	303154	2	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BAG6	ENSG00000204463.14	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.2:ENST00000375976.8:ENST00000362049.10:ENST00000439687.6:ENST00000437771.5:ENST00000435080.5:ENST00000456622.5:ENST00000452994.5:ENST00000434444.5:ENST00000428326.5:ENST00000451898.5:ENST00000433828.5:ENST00000424480.5:ENST00000424176.5:ENST00000441054.5:ENST00000456286.5:ENST00000454165.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	292	2	4.71723	5.062255	5.40728	0.00236637	3.86674e-5	0.0306624	0.00135841
chr11	14763446	14763546	4806217	0	+	0.4	(0.39,0.419]	chr11	460698	627	INTRON	INTRON	PDE3B	ENSG00000152270.9	ENST00000282096.9:ENST00000455098.2:ENST00000534317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	4.76257	5.062060000000001	5.36155	0.0822354	0.00648185	0.179396	0.0503748
chr10	38055460	38055560	4478511	0	+	0.44	(0.419,0.45]	chr10	428212	10	CDS	CDS:EXON_MRNA:INTRON	ZNF33A	ENSG00000189180.16	ENST00000307441.13:ENST00000374618.7:ENST00000628825.2:ENST00000458705.6:ENST00000432900.7:ENST00000469037.2	protein_coding	protein_coding	protein_coding	protein_coding	2	159	2	3.58175	5.06187	6.54199	0.00668959	0.00296557	0.0541558	0.0301816
chr11	70762169	70762269	5061903	0	-	0.41	(0.39,0.419]	chr11	492701	443	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	4.79402	5.061865	5.32971	0.0390381	0.0208208	0.131575	0.102713
chr2	226732397	226732496	1379199	0	-	0.313131	(0.29,0.33]	chr2	147289	12	UTR3	UTR3:EXON_MRNA	IRS1	ENSG00000169047.6	ENST00000305123.6	protein_coding	protein_coding	protein_coding	protein_coding	1	112	2	3.84904	5.061775	6.27451	0.00564709	0.00359491	0.0495171	0.0342681
chr6	88738804	88738904	3199725	0	-	0.36	(0.33,0.36]	chr6	310400	245	INTRON	INTRON	RNGTT	ENSG00000111880.16	ENST00000369485.9:ENST00000369475.7:ENST00000627296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	4.95163	5.0615749999999995	5.17152	0.0583482	0.00887848	0.155373	0.0618231
chr8	96517705	96517805	3868972	0	+	0.35	(0.33,0.36]	chr8	371279	230	INTRON	INTRON	SDC2	ENSG00000169439.12	ENST00000302190.9:ENST00000518385.5:ENST00000519587.1:ENST00000520233.1:ENST00000522911.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.95163	5.0615749999999995	5.17152	0.0583482	0.00887848	0.155373	0.0618231
chr20	10260717	10260817	7523597	0	-	0.35	(0.33,0.36]	chr20	785393	287	INTRON	INTRON	SNAP25-AS1	ENSG00000227906.9	ENST00000421143.6:ENST00000692436.1:ENST00000453544.5	lncRNA	lncRNA	lncRNA	lncRNA	0	51	2	5.00642	5.0614799999999995	5.11654	0.0542065	0.00998589	0.151733	0.0667545
chr1	7480000	7480100	15410	0	+	0.48	(0.45,0.485]	chr1	1895	117	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.50852	5.061415	5.61431	0.0302873	0.0217589	0.126768	0.100615
chr22	20136414	20136513	7686995	0	+	0.606061	(0.58,1]	chr22	804236	40	INTRON	INTRON	ZDHHC8	ENSG00000099904.16	ENST00000436518.5:ENST00000334554.12:ENST00000405930.3:ENST00000320602.11:ENST00000468112.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.95814	5.061335	5.16453	0.0249802	0.0074469	0.10758	0.0553519
chr16	81641364	81641464	6509711	0	+	0.43	(0.419,0.45]	chr16	645926	193	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.63955	5.061325	5.4831	0.0345118	0.0293406	0.126025	0.125102
chr17	66188078	66188177	6956456	0	-	0.424242	(0.419,0.45]	chr17	709449	44	INTRON	INTRON	CEP112	ENSG00000154240.17	ENST00000535342.7:ENST00000392769.6:ENST00000537949.5:ENST00000583358.1:ENST00000580624.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	55	2	4.63955	5.061325	5.4831	0.0345118	0.0293406	0.126025	0.125102
chr5	14696794	14696892	2387656	0	+	0.469388	(0.45,0.485]	chr5	238863	39	UTR3	UTR3:EXON_MRNA	OTULIN	ENSG00000154124.5	ENST00000284274.5	protein_coding	protein_coding	protein_coding	protein_coding	1	137	2	3.49427	5.06128	6.62829	0.0237694	1.90839e-4	0.105296	0.0043642
chr16	85397732	85397832	6517048	0	+	0.6	(0.58,1]	chr16	646391	384	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.49116	5.06117	5.63118	0.0207449	0.0109983	0.102713	0.0708586
chr16	85449211	85449311	6517563	0	+	0.59	(0.58,1]	chr16	646391	899	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.49116	5.06117	5.63118	0.0207449	0.0109983	0.102713	0.0708586
chr16	85515483	85515583	6518226	0	+	0.68	(0.58,1]	chr16	646391	1562	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.49116	5.06117	5.63118	0.0207449	0.0109983	0.102713	0.0708586
chr1	202381315	202381415	317593	0	+	0.42	(0.419,0.45]	chr1	35751	318	INTRON	INTRON	PPP1R12B	ENSG00000077157.22	ENST00000391959.5:ENST00000608999.6:ENST00000480184.5:ENST00000356764.6:ENST00000476364.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.81671	5.061095	5.30548	0.08258	0.00792071	0.179396	0.057762
chr2	231145339	231145439	1048539	0	+	0.45	(0.419,0.45]	chr2	114162	61	INTRON	INTRON	PSMD1	ENSG00000173692.14	ENST00000677180.1:ENST00000677259.1:ENST00000676818.1:ENST00000679034.1:ENST00000677230.1:ENST00000678241.1:ENST00000676740.1:ENST00000678460.1:ENST00000619128.5:ENST00000677000.1:ENST00000678679.1:ENST00000678112.1:ENST00000409643.6:ENST00000677724.1:ENST00000679095.1:ENST00000676739.1:ENST00000678632.1:ENST00000677233.1:ENST00000676506.1:ENST00000431051.6:ENST00000308696.11:ENST00000678140.1:ENST00000373635.9:ENST00000677158.1:ENST00000677195.1:ENST00000677229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	4.81671	5.061095	5.30548	0.08258	0.00792071	0.179396	0.057762
chr6	3402409	3402509	3087515	0	-	0.56	(0.523,0.58]	chr6	299778	246	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	119	2	3.47888	5.061	6.64312	0.00856566	0.00323048	0.0612	0.0362983
chr15	28217789	28217888	6207149	0	-	0.575758	(0.523,0.58]	chr15	611111	16	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.68785	5.060980000000001	5.43411	0.026041	0.0194172	0.109673	0.0994526
chr9	134346620	134346720	4260889	0	+	0.57	(0.523,0.58]	chr9	406311	196	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	53	2	4.68785	5.060980000000001	5.43411	0.026041	0.0194172	0.109673	0.0994526
chr16	85398132	85398232	6517052	0	+	0.51	(0.485,0.523]	chr16	646391	388	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	64	2	4.12717	5.060955	5.99474	0.0545434	0.0103305	0.167824	0.0684871
chr16	81681119	81681218	6510122	0	+	0.565657	(0.523,0.58]	chr16	645979	21	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.71922	5.060735	5.40225	0.0721601	0.00404292	0.168159	0.0371291
chr3	30637546	30637646	1433402	0	+	0.46	(0.45,0.485]	chr3	153006	43	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4:ENST00000673250.1:ENST00000672866.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	216	2	3.53974	5.060645	6.58155	0.00421879	9.91511e-4	0.0421633	0.0141239
chr11	43709894	43709994	4846399	0	+	0.56	(0.523,0.58]	chr11	463519	282	INTRON	INTRON	ENSG00000283341:HSD17B12	ENSG00000283341.3:ENSG00000149084.13	ENST00000532864.6:ENST00000529261.5:ENST00000527433.6:ENST00000531185.5:ENST00000278353.10:ENST00000636007.1:ENST00000395700.4:ENST00000637401.1:ENST00000636722.1:ENST00000638034.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	1	113	2	3.72444	5.060625	6.39681	0.00509616	0.00470358	0.0467496	0.0413976
chr10	116668909	116668995	4765547	0	-	0.546512	(0.523,0.58]	chr10	455709	2	INTRON	INTRON	C10orf82	ENSG00000165863.17	ENST00000369210.7:ENST00000588184.2:ENST00000467153.5:ENST00000588224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	4.60868	5.060575	5.51247	0.0230387	0.0226775	0.108193	0.102982
chr9	123405387	123405486	4396614	0	-	0.565657	(0.523,0.58]	chr9	419589	15	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	4.60868	5.060575	5.51247	0.0230387	0.0226775	0.108193	0.102982
chr7	138000904	138001003	3720712	0	-	0.494949	(0.485,0.523]	chr7	357311	7	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5:ENST00000468127.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	134	2	3.62547	5.06055	6.49563	0.0178931	2.29841e-4	0.0918433	0.00498593
chr7	139665287	139665387	3722798	0	-	0.53	(0.523,0.58]	chr7	357498	332	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	1	134	2	3.51606	5.060535	6.60501	0.0216194	1.58554e-4	0.100615	0.00384084
chr5	176588035	176588134	2596935	0	+	0.434343	(0.419,0.45]	chr5	257747	8	INTRON	INTRON	CDHR2	ENSG00000074276.11	ENST00000510636.5:ENST00000261944.10:ENST00000506348.1:ENST00000513031.5:ENST00000508085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	52	2	4.98054	5.06052	5.1405	0.0550015	0.0154548	0.153337	0.0869771
chr20	17657396	17657496	7532187	0	-	0.52	(0.485,0.523]	chr20	786036	139	INTRON	INTRON	RRBP1	ENSG00000125844.17	ENST00000360807.8:ENST00000377807.6:ENST00000246043.8:ENST00000377813.6:ENST00000455029.3:ENST00000495501.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	150	2	3.40934	5.06047	6.7116	0.00351152	0.00281636	0.0339498	0.0336649
chr1	228143627	228143727	358020	0	+	0.6	(0.58,1]	chr1	40401	14	INTRON	INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	112	2	3.48503	5.05989	6.63475	0.006811	0.00146621	0.0524379	0.023492
chr10	73401257	73401357	4714356	0	-	0.33	(0.29,0.33]	chr10	449385	4	SS3_PROX	SS3_PROX:INTRON	ANXA7	ENSG00000138279.16	ENST00000372921.10:ENST00000372919.8:ENST00000492380.1:ENST00000394847.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.72635	5.059845	5.39334	0.0672935	0.00448059	0.163263	0.0398484
chr1	17682277	17682376	55034	0	+	0.525253	(0.523,0.58]	chr1	5603	173	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.90222	5.0597449999999995	5.21727	0.0361597	0.0125132	0.127853	0.0765738
chr17	57467902	57468001	6761891	0	+	0.555556	(0.523,0.58]	chr17	682137	228	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.90222	5.0597449999999995	5.21727	0.0361597	0.0125132	0.127853	0.0765738
chr17	78698067	78698167	6978461	0	-	0.56	(0.523,0.58]	chr17	712565	4	SS5_PROX	SS5_PROX:INTRON	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000589297.5:ENST00000585509.5:ENST00000591574.5:ENST00000590775.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.90222	5.0597449999999995	5.21727	0.0361597	0.0125132	0.127853	0.0765738
chr2	218783935	218784035	1035228	0	+	0.56	(0.523,0.58]	chr2	112667	11	INTRON	INTRON	CYP27A1	ENSG00000135929.9	ENST00000494263.5:ENST00000258415.9:ENST00000445971.1:ENST00000466602.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	51	2	4.90222	5.0597449999999995	5.21727	0.0361597	0.0125132	0.127853	0.0765738
chr22	45291210	45291308	7738861	0	+	0.530612	(0.523,0.58]	chr22	811371	17	INTRON	INTRON	UPK3A	ENSG00000100373.10	ENST00000216211.9:ENST00000396082.2	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.90222	5.0597449999999995	5.21727	0.0361597	0.0125132	0.127853	0.0765738
chr3	50591681	50591781	1470341	0	+	0.54	(0.523,0.58]	chr3	157761	114	UTR3	UTR3:EXON_MRNA	HEMK1	ENSG00000114735.10	ENST00000434410.5:ENST00000232854.9	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.90222	5.0597449999999995	5.21727	0.0361597	0.0125132	0.127853	0.0765738
chr5	142950179	142950279	2557874	0	+	0.56	(0.523,0.58]	chr5	254071	177	INTRON	INTRON	ARHGAP26	ENSG00000145819.18	ENST00000274498.9:ENST00000645722.2:ENST00000642734.1:ENST00000451259.1:ENST00000469131.6:ENST00000469396.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.90222	5.0597449999999995	5.21727	0.0361597	0.0125132	0.127853	0.0765738
chr7	55068139	55068239	3372037	0	+	0.3	(0.29,0.33]	chr7	325289	242	INTRON	INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000463948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	111	2	4.06424	5.059735	6.05523	0.00839544	0.0020563	0.0616149	0.0235218
chr22	33259319	33259419	7796227	0	-	0.42	(0.419,0.45]	chr22	817501	377	INTRON	INTRON	LARGE1	ENSG00000133424.22	ENST00000608642.6:ENST00000609799.6:ENST00000610186.6	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.7145	5.059635	5.40477	0.0385125	0.0256236	0.131324	0.115966
chr11	70536930	70537030	5059642	0	-	0.49	(0.485,0.523]	chr11	492663	336	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	53	2	4.68434	5.059435	5.43453	0.0258944	0.0200045	0.109555	0.100864
chr7	47366868	47366967	3587460	0	-	0.515152	(0.485,0.523]	chr7	346030	202	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.68434	5.059435	5.43453	0.0258944	0.0200045	0.109555	0.100864
chr17	82003544	82003644	6815332	0	+	0.66	(0.58,1]	chr17	688640	63	INTRON	INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	270	2	3.16141	5.0594	6.95739	8.07245e-4	7.23847e-4	0.0158739	0.0122248
chr15	64259441	64259541	6299796	0	-	0.36	(0.33,0.36]	chr15	620846	2	SS3_PROX	SS3_PROX:INTRON	CSNK1G1:ENSG00000259316	ENSG00000169118.18:ENSG00000259316.12	ENST00000303052.13:ENST00000607537.6:ENST00000561349.6:ENST00000635142.1:ENST00000634654.1:ENST00000634811.1:ENST00000606225.1:ENST00000606793.3:ENST00000634251.1:ENST00000634847.3:ENST00000635324.1:ENST00000635270.1:ENST00000635529.1:ENST00000634318.1:ENST00000635514.1:ENST00000635359.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	5.0592	5.059285	5.05937	0.0504445	0.0112642	0.148216	0.071709
chr6	158324867	158324967	3061770	0	+	0.42	(0.419,0.45]	chr6	297592	102	INTRON	INTRON	ENSG00000274023:TULP4	ENSG00000274023.1:ENSG00000130338.13	ENST00000619713.1:ENST00000367097.8:ENST00000367094.6:ENST00000616856.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	2	199	2	2.89067	5.059115	7.22756	0.0370948	6.01346e-5	0.129974	0.00187442
chr2	135658982	135659081	901820	0	+	0.464646	(0.45,0.485]	chr2	101640	66	INTRON	INTRON	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000410054.5:ENST00000628915.2:ENST00000409606.5:ENST00000429703.6	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.81772	5.058725	5.29973	0.035042	0.0167663	0.12704	0.0917029
chr4	158245248	158245348	2156033	0	+	0.46	(0.45,0.485]	chr4	218463	5	INTRON	INTRON	TMEM144	ENSG00000164124.11	ENST00000296529.11:ENST00000511532.5:ENST00000503404.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	52	2	4.81772	5.058725	5.29973	0.035042	0.0167663	0.12704	0.0917029
chr16	87477895	87477995	6655874	0	-	0.63	(0.58,1]	chr16	665821	174	INTRON	INTRON	ZCCHC14	ENSG00000140948.13	ENST00000268616.9:ENST00000671377.2:ENST00000568020.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	135	2	4.32451	5.05867	5.79283	0.00317254	8.4246e-4	0.0360488	0.0125912
chr2	111404512	111404612	1252681	0	-	0.46	(0.45,0.485]	chr2	134896	262	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1	lncRNA	lncRNA	lncRNA	lncRNA	1	113	2	4.15879	5.058615	5.95844	0.0124835	0.00168387	0.0761905	0.0204246
chr19	18468100	18468199	7347872	0	-	0.474747	(0.45,0.485]	chr19	761486	18	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	165	2	4.47404	5.05842	5.6428	0.00422111	0.00265386	0.0421724	0.027979
chr3	65914569	65914669	1814624	0	-	0.49	(0.485,0.523]	chr3	187310	70	INTRON	INTRON	MAGI1:MAGI1-IT1	ENSG00000151276.24:ENSG00000272610.1	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5:ENST00000460754.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	0	51	2	4.8987	5.0581949999999996	5.21769	0.0359739	0.0129327	0.127853	0.0778105
chr3	197821230	197821330	1668994	0	+	0.37	(0.36,0.39]	chr3	175040	4	INTRON	INTRON	LRCH3	ENSG00000186001.14	ENST00000443727.1:ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8:ENST00000493726.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	117	2	4.16956	5.05797	5.9463800000000004	0.0151971	0.00192895	0.084474	0.0224816
chr10	19382336	19382436	4452658	0	+	0.42	(0.419,0.45]	chr10	426783	297	INTRON	INTRON	MALRD1	ENSG00000204740.11	ENST00000454679.7:ENST00000377266.7	protein_coding	protein_coding	protein_coding	protein_coding	1	144	2	3.56008	5.057665	6.55525	0.0250979	3.84925e-4	0.107672	0.00726694
chr10	18559865	18559965	4642327	0	-	0.42	(0.419,0.45]	chr10	443321	75	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.29342	5.05739	5.82136	0.0526662	0.0210659	0.167062	0.0996078
chr10	79104829	79104929	4532403	0	+	0.42	(0.419,0.45]	chr10	432420	352	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.29342	5.05739	5.82136	0.0526662	0.0210659	0.167062	0.0996078
chr1	12594590	12594689	402549	0	-	0.565657	(0.523,0.58]	chr1	46222	136	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	52	2	4.7629	5.0570699999999995	5.35124	0.0295772	0.0167014	0.116079	0.0917029
chr14	69878620	69878719	5871154	0	+	0.555556	(0.523,0.58]	chr14	573298	141	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000555917.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	52	2	4.7629	5.0570699999999995	5.35124	0.0295772	0.0167014	0.116079	0.0917029
chr16	953674	953763	6531570	0	-	0.573034	(0.523,0.58]	chr16	648705	7	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1:ENST00000566609.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	52	2	4.7629	5.0570699999999995	5.35124	0.0295772	0.0167014	0.116079	0.0917029
chr19	16131521	16131616	7216454	0	+	0.547368	(0.523,0.58]	chr19	737377	16	INTRON	INTRON	RAB8A	ENSG00000167461.12	ENST00000300935.8:ENST00000586682.1:ENST00000592971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	52	2	4.7629	5.0570699999999995	5.35124	0.0295772	0.0167014	0.116079	0.0917029
chr5	119269007	119269107	2516595	0	+	0.54	(0.523,0.58]	chr5	249985	1	SS5_PROX	SS5_PROX:INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.7629	5.0570699999999995	5.35124	0.0295772	0.0167014	0.116079	0.0917029
chr19	36837938	36838027	7371531	0	-	0.516854	(0.485,0.523]	chr19	764190	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ZNF790	ENSG00000197863.9	ENST00000356725.9:ENST00000613249.4:ENST00000614179.4:ENST00000615484.4:ENST00000528994.5:ENST00000586323.5:ENST00000525288.5:ENST00000527645.1	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.581	5.057040000000001	5.53308	0.085711	0.00304306	0.181766	0.0306636
chr21	38808663	38808763	7620629	0	+	0.31	(0.29,0.33]	chr21	796141	4	SS5_PROX	SS5_PROX:INTRON	ETS2	ENSG00000157557.13	ENST00000360214.8:ENST00000665212.1:ENST00000667466.1:ENST00000360938.8:ENST00000432278.5:ENST00000666778.1:ENST00000653642.1	protein_coding	protein_coding	protein_coding	protein_coding	1	142	2	4.14714	5.05698	5.96682	0.0065704	0.00106564	0.0537374	0.0148659
chr8	700295	700394	3932732	0	-	0.747475	(0.58,1]	chr8	376054	73	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000524138.5:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	102	2	4.10248	5.05691	6.01134	0.00531709	0.0012583	0.047841	0.0167083
chr19	2337253	2337333	7189495	0	+	0.7125	(0.58,1]	chr19	731787	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1:ENST00000593243.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	102	2	4.0743	5.056615	6.03893	0.00503456	0.00136577	0.0464858	0.0176851
chr7	96976458	96976557	3646054	0	-	0.474747	(0.45,0.485]	chr7	350894	70	INTRON	INTRON	DLX6-AS1	ENSG00000231764.11	ENST00000430027.3:ENST00000659765.1:ENST00000458352.5:ENST00000656954.1:ENST00000605417.6:ENST00000654988.1:ENST00000658043.1:ENST00000452769.4:ENST00000437331.4:ENST00000430404.7	lncRNA	lncRNA	lncRNA	lncRNA	1	139	2	3.84298	5.05643	6.26988	0.0131965	5.20615e-4	0.0785449	0.00899129
chr6	2491565	2491665	2826858	0	+	0.3	(0.29,0.33]	chr6	277337	21	INTRON	INTRON	GMDS-DT	ENSG00000250903.10	ENST00000659523.1	lncRNA	lncRNA	lncRNA	lncRNA	0	52	2	4.75412	5.056295	5.35847	0.0269557	0.0180435	0.112113	0.0952934
chr14	89246831	89246930	6026566	0	-	0.393939	(0.39,0.419]	chr14	591432	156	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	188	2	3.31113	5.056135	6.80114	0.00368319	0.00318878	0.0389784	0.0316983
chr11	76948164	76948264	4904061	0	+	0.46	(0.45,0.485]	chr11	473169	211	INTRON	INTRON	ACER3	ENSG00000078124.13	ENST00000679754.1:ENST00000534206.5:ENST00000679866.1:ENST00000680842.1:ENST00000681257.1:ENST00000681354.1:ENST00000681732.1:ENST00000680583.1:ENST00000532485.6:ENST00000681375.1:ENST00000681004.1:ENST00000525194.5:ENST00000525861.5:ENST00000530182.6:ENST00000531461.5:ENST00000681955.1:ENST00000681411.1:ENST00000679611.1:ENST00000679924.1:ENST00000526597.5:ENST00000681251.1:ENST00000530334.6:ENST00000533873.1:ENST00000531352.5:ENST00000278544.9:ENST00000680351.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	4.95056	5.056025	5.16149	0.0427653	0.0127826	0.13762	0.0773423
chr19	5815405	5815504	7195540	0	+	0.464646	(0.45,0.485]	chr19	733105	96	INTRON	INTRON	NRTN	ENSG00000171119.3	ENST00000303212.3	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.95056	5.056025	5.16149	0.0427653	0.0127826	0.13762	0.0773423
chr12	6768767	6768862	5165704	0	+	0.568421	(0.523,0.58]	chr12	502315	17	INTRON	INTRON	PTMS	ENSG00000159335.18	ENST00000540667.5:ENST00000309083.8:ENST00000389462.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	55	2	4.5249	5.0558499999999995	5.5868	0.0266135	0.020474	0.118113	0.0979776
chrX	10024359	10024459	7845336	0	+	0.53	(0.523,0.58]	chrX	822539	76	INTRON	INTRON	WWC3	ENSG00000047644.20	ENST00000380861.10	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.5249	5.0558499999999995	5.5868	0.0266135	0.020474	0.118113	0.0979776
chr17	80024101	80024201	6982157	0	-	0.74	(0.58,1]	chr17	713081	101	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7	protein_coding	protein_coding	protein_coding	protein_coding	1	102	2	4.04556	5.055775000000001	6.06599	0.00477081	0.00148416	0.0450109	0.0186585
chr21	44047494	44047594	7626025	0	+	0.49	(0.485,0.523]	chr21	796992	92	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.75939	5.05553	5.35167	0.0294163	0.0172254	0.116079	0.0923809
chr12	53188782	53188881	5235215	0	+	0.393939	(0.39,0.419]	chr12	508673	13	UTR3	UTR3:EXON_MRNA	ZNF740	ENSG00000139651.11	ENST00000416904.5	protein_coding	protein_coding	protein_coding	protein_coding	1	116	2	4.00778	5.055400000000001	6.10302	0.0120635	0.00291522	0.0745226	0.0298627
chr7	6700320	6700420	3542716	0	-	0.39	(0.36,0.39]	chr7	342315	1	SS5_PROX	SS5_PROX:INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000404360.5:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	1	116	2	3.90975	5.0553	6.20085	0.0100561	0.00370144	0.0677306	0.0349217
chr1	43565501	43565601	107094	0	+	0.6	(0.58,1]	chr1	13192	112	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	108	2	3.60807	5.055185	6.5023	0.00495688	0.00194503	0.0425347	0.0275844
chr12	79890719	79890819	5463325	0	-	0.35	(0.33,0.36]	chr12	537312	174	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546369.5:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.99985	5.054985	5.11012	0.04702	0.0127452	0.143232	0.0773423
chr2	3300091	3300191	1081108	0	-	0.34	(0.33,0.36]	chr2	117633	174	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.99985	5.054985	5.11012	0.04702	0.0127452	0.143232	0.0773423
chr12	49513105	49513205	5226642	0	+	0.35	(0.33,0.36]	chr12	507246	2	SS5_PROX	SS5_PROX:INTRON	SPATS2	ENSG00000123352.18	ENST00000549412.5:ENST00000552918.6:ENST00000553127.5:ENST00000321898.10:ENST00000552557.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	114	2	4.04541	5.054445	6.06348	0.0108257	0.00246593	0.0707085	0.0266039
chr15	73689073	73689172	6150522	0	+	0.494949	(0.485,0.523]	chr15	604912	36	INTRON	INTRON	CD276	ENSG00000103855.18	ENST00000567189.5:ENST00000537340.6:ENST00000318424.9:ENST00000318443.10:ENST00000560786.6:ENST00000558689.5:ENST00000561213.5:ENST00000560928.5:ENST00000563584.5:ENST00000561416.5:ENST00000560995.5:ENST00000567582.5:ENST00000561260.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	4.52142	5.054325	5.58723	0.0273555	0.0203514	0.119337	0.0979211
chr2	47502559	47502659	790069	0	+	0.49	(0.485,0.523]	chr2	90266	195	INTRON	INTRON	MSH2	ENSG00000095002.15	ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000644900.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	55	2	4.52142	5.054325	5.58723	0.0273555	0.0203514	0.119337	0.0979211
chr6	36680073	36680173	2906390	0	+	0.6	(0.58,1]	chr6	285236	2	SS3_PROX	SS3_PROX:INTRON	CDKN1A	ENSG00000124762.14	ENST00000615513.4:ENST00000448526.6:ENST00000459970.1:ENST00000405375.5:ENST00000244741.10:ENST00000373711.3:ENST00000478800.1:ENST00000462537.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	136	2	3.75213	5.054295	6.35646	0.00264106	9.51475e-4	0.0325876	0.0136675
chr16	50598397	50598497	6451911	0	+	0.59	(0.58,1]	chr16	639902	398	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	136	2	3.62605	5.0542	6.48235	0.00202884	0.00138924	0.0283135	0.0179324
chr1	206351189	206351289	325139	0	+	0.43	(0.419,0.45]	chr1	36570	78	INTRON	INTRON	SRGAP2	ENSG00000266028.8	ENST00000573034.8:ENST00000419187.6:ENST00000605610.5:ENST00000624873.3:ENST00000605242.5:ENST00000572793.2:ENST00000604133.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	4.7549	5.054035000000001	5.35317	0.0888907	0.00714797	0.183874	0.0541241
chr19	33423233	33423333	7365070	0	-	0.43	(0.419,0.45]	chr19	763415	92	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000590731.6:ENST00000609145.5:ENST00000588719.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	52	2	4.7549	5.054035000000001	5.35317	0.0888907	0.00714797	0.183874	0.0541241
chr14	54428530	54428624	5984339	0	-	0.361702	(0.36,0.39]	chr14	586831	3	INTRON	INTRON	CNIH1	ENSG00000100528.12	ENST00000216416.9:ENST00000395573.8:ENST00000557659.5:ENST00000553660.5:ENST00000557690.5:ENST00000554683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.69932	5.0538050000000005	5.40829	0.0877431	0.00581205	0.183437	0.0472624
chr2	38326206	38326305	1123822	0	-	0.40404	(0.39,0.419]	chr2	123019	68	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	193	2	3.13755	5.0537	6.96985	0.023697	1.07091e-4	0.105175	0.00288045
chr7	103952458	103952557	3663323	0	-	0.313131	(0.29,0.33]	chr7	353511	349	INTRON	INTRON	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1:ENST00000681401.1:ENST00000679689.1:ENST00000681182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	231	2	3.8782	5.05339	6.22858	0.00614258	3.43425e-4	0.0517628	0.00670974
chr7	44430501	44430601	3584499	0	-	0.34	(0.33,0.36]	chr7	345547	24	INTRON	INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000472246.5:ENST00000464812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	114	2	4.06936	5.05338	6.0374	0.0113089	0.00231927	0.0722887	0.0255753
chr6	169651234	169651331	3304376	0	-	0.56701	(0.523,0.58]	chr6	319869	16	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	116	2	3.55341	5.05335	6.55329	0.00716661	0.00382069	0.0541871	0.0398603
chr9	133802492	133802591	4428416	0	-	0.616162	(0.58,1]	chr9	423268	43	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	1	110	2	3.52722	5.053345	6.57947	0.00611467	0.00165065	0.0489549	0.0250898
chr5	14168529	14168629	2383602	0	+	0.43	(0.419,0.45]	chr5	238468	243	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000502816.1:ENST00000505971.5:ENST00000512070.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	4.91849	5.053265	5.18804	0.051668	0.0174488	0.148503	0.0928044
chr7	132963622	132963721	3714665	0	-	0.323232	(0.29,0.33]	chr7	356862	763	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	50	2	4.96914	5.0531500000000005	5.13716	0.0481918	0.00805226	0.144601	0.0582806
chr7	2041118	2041218	3530643	0	-	0.56	(0.523,0.58]	chr7	340995	261	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.905	5.05302	5.20104	0.0563605	0.00648051	0.154188	0.0503748
chr1	7499700	7499800	15607	0	+	0.48	(0.45,0.485]	chr1	1895	314	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	4.32491	5.052935	5.78096	0.0418883	0.0166968	0.149021	0.0884836
chr16	1391194	1391293	6532332	0	-	0.414141	(0.39,0.419]	chr16	648826	1	INTRON	INTRON	UNKL	ENSG00000059145.19	ENST00000389221.9:ENST00000508903.7	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.69798	5.05285	5.40772	0.088901	0.00585126	0.183874	0.0474117
chr20	43571060	43571160	7481184	0	+	0.49	(0.485,0.523]	chr20	779402	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SGK2	ENSG00000101049.18	ENST00000373100.7:ENST00000373077.5:ENST00000648530.1:ENST00000496343.6:ENST00000423407.7:ENST00000412111.6:ENST00000341458.10:ENST00000426287.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	4.96239	5.052435	5.14248	0.0518747	0.00761903	0.148503	0.0561937
chr9	120510161	120510261	4385043	0	-	0.5	(0.485,0.523]	chr9	418390	183	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000690814.1:ENST00000686842.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5:ENST00000690474.1:ENST00000693137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	50	2	4.96239	5.052435	5.14248	0.0518747	0.00761903	0.148503	0.0561937
chr21	31717714	31717814	7649988	0	-	0.34	(0.33,0.36]	chr21	800068	110	INTRON	INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000485790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	52	2	4.64131	5.052429999999999	5.46355	0.0867669	0.00462971	0.182221	0.0408278
chr2	54013266	54013366	795333	0	+	0.51	(0.485,0.523]	chr2	90708	380	INTRON	INTRON	ACYP2	ENSG00000170634.13	ENST00000458030.3:ENST00000422521.2:ENST00000607452.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	111	2	3.83677	5.0522	6.26763	0.00639185	0.00360381	0.0529032	0.0342681
chr4	87138370	87138468	2081153	0	+	0.316327	(0.29,0.33]	chr4	212308	28	UTR3	UTR3:EXON_MRNA	AFF1	ENSG00000172493.23	ENST00000395146.9:ENST00000544085.6:ENST00000307808.10	protein_coding	protein_coding	protein_coding	protein_coding	1	117	2	3.52516	5.052105	6.57905	0.0079683	0.00319145	0.0579377	0.0361193
chr10	103702606	103702706	4757126	0	-	0.63	(0.58,1]	chr10	454791	91	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.89007	5.05192	5.21377	0.0230012	0.00872525	0.102982	0.0612699
chr11	421398	421498	4968156	0	-	0.69	(0.58,1]	chr11	480427	2	SS3_PROX	SS3_PROX:INTRON	ANO9	ENSG00000185101.13	ENST00000526142.5:ENST00000534161.5:ENST00000332826.7:ENST00000532094.5:ENST00000528927.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	4.89007	5.05192	5.21377	0.0230012	0.00872525	0.102982	0.0612699
chr16	85393034	85393134	6517001	0	+	0.62	(0.58,1]	chr16	646391	337	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.89007	5.05192	5.21377	0.0230012	0.00872525	0.102982	0.0612699
chrX	1396840	1396932	7830129	0	+	0.608696	(0.58,1]	chrX	822051	2	SS5_PROX	SS5_PROX:INTRON	LINC00106	ENSG00000236871.7	ENST00000434938.7	lncRNA	lncRNA	lncRNA	lncRNA	0	49	2	4.89007	5.05192	5.21377	0.0230012	0.00872525	0.102982	0.0612699
chr19	18468298	18468397	7347874	0	-	0.585859	(0.58,1]	chr19	761486	20	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	128	2	4.13566	5.0519	5.96814	0.00472191	5.06433e-4	0.0449204	0.00881473
chr16	89435520	89435620	6661189	0	-	0.48	(0.45,0.485]	chr16	666753	38	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	112	2	3.96198	5.051585	6.14119	0.00917101	0.00281669	0.064285	0.0291091
chr1	245798741	245798841	698759	0	-	0.38	(0.36,0.39]	chr1	82352	99	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000490322.1:ENST00000493441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	51	2	4.94194	5.051495	5.16105	0.064883	0.00993384	0.162218	0.0666221
chr6	70729478	70729578	2938092	0	+	0.38	(0.36,0.39]	chr6	289077	604	INTRON	INTRON	SMAP1	ENSG00000112305.15	ENST00000370452.7:ENST00000316999.9:ENST00000370455.8:ENST00000619054.4	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.94194	5.051495	5.16105	0.064883	0.00993384	0.162218	0.0666221
chr15	22964706	22964806	6204159	0	-	0.49	(0.485,0.523]	chr15	610573	163	INTRON	INTRON	CYFIP1	ENSG00000273749.5	ENST00000617928.5:ENST00000610365.4:ENST00000613006.4:ENST00000611832.4:ENST00000619037.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	4.90542	5.051455000000001	5.19749	0.0561086	0.00672953	0.154188	0.0519464
chr16	81545481	81545581	6508748	0	+	0.5	(0.485,0.523]	chr16	645911	496	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.90542	5.051455000000001	5.19749	0.0561086	0.00672953	0.154188	0.0519464
chr6	127276049	127276149	3005062	0	+	0.5	(0.485,0.523]	chr6	293882	86	INTRON	INTRON	RNF146	ENSG00000118518.17	ENST00000476956.5:ENST00000609447.5:ENST00000356799.6:ENST00000495188.2:ENST00000368314.6:ENST00000477776.5:ENST00000609944.5:ENST00000608991.5:ENST00000610153.1:ENST00000489534.5:ENST00000610162.5:ENST00000608340.5:ENST00000480444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	50	2	4.90542	5.051455000000001	5.19749	0.0561086	0.00672953	0.154188	0.0519464
chr3	168052559	168052659	1953054	0	-	0.37	(0.36,0.39]	chr3	198615	38	INTRON	INTRON	GOLIM4	ENSG00000173905.9	ENST00000470487.6:ENST00000309027.4	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.99672	5.0514	5.10608	0.0604395	0.0111429	0.158506	0.071709
chr17	72558921	72559021	6963900	0	-	0.54	(0.523,0.58]	chr17	710389	245	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	3	192	2	3.95319	5.05135	6.14951	0.00793972	3.87651e-4	0.0596361	0.00730116
chr3	194480007	194480107	1979673	0	-	0.35	(0.33,0.36]	chr3	201444	119	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	4.80497	5.051254999999999	5.29754	0.0360263	0.0188359	0.127853	0.0980631
chr1	44511929	44512029	113122	0	+	0.4	(0.39,0.419]	chr1	14018	922	INTRON	INTRON	RNF220	ENSG00000187147.18	ENST00000355387.6:ENST00000361799.7:ENST00000372247.6	protein_coding	protein_coding	protein_coding	protein_coding	1	203	2	4.8375	5.051005	5.26451	0.00800901	0.00257386	0.0580954	0.0321387
chr2	235721388	235721488	1064818	0	+	0.38	(0.36,0.39]	chr2	115681	26	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	54	2	4.64834	5.0509699999999995	5.4536	0.0321864	0.0272056	0.121593	0.119337
chr8	108461276	108461375	3902500	0	+	0.383838	(0.36,0.39]	chr8	372963	50	INTRON	INTRON	EMC2	ENSG00000104412.8	ENST00000220853.8:ENST00000517784.5:ENST00000519642.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	4.64834	5.0509699999999995	5.4536	0.0321864	0.0272056	0.121593	0.119337
chr4	719624	719724	1993824	0	+	0.64	(0.58,1]	chr4	203088	133	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	4.66416	5.05084	5.43752	0.0156166	0.0144381	0.0849828	0.0833845
chr1	7498300	7498400	15593	0	+	0.45	(0.419,0.45]	chr1	1895	300	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12	protein_coding	protein_coding	protein_coding	protein_coding	0	66	2	4.08324	5.05079	6.01834	0.0727147	0.015582500000000001	0.199502	0.0849828
chr12	15289292	15289392	5378162	0	-	0.41	(0.39,0.419]	chr12	527341	680	INTRON	INTRON	RERG	ENSG00000134533.6	ENST00000393736.3	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.99538	5.050445	5.10551	0.0613573	0.0112089	0.158506	0.071709
chr15	50431149	50431248	6103049	0	+	0.414141	(0.39,0.419]	chr15	600995	39	INTRON	INTRON	USP8	ENSG00000138592.14	ENST00000560297.5:ENST00000396444.7:ENST00000560954.5:ENST00000425032.7:ENST00000558892.1:ENST00000307179.9:ENST00000559329.5:ENST00000560885.5:ENST00000560730.5:ENST00000625664.2:ENST00000560982.5:ENST00000561211.5:ENST00000558091.5	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	51	2	4.99538	5.050445	5.10551	0.0613573	0.0112089	0.158506	0.071709
chr2	134237206	134237305	896603	0	+	0.414141	(0.39,0.419]	chr2	101196	1097	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.99538	5.050445	5.10551	0.0613573	0.0112089	0.158506	0.071709
chrX	107099720	107099819	8087168	0	-	0.414141	(0.39,0.419]	chrX	843296	105	INTRON	INTRON	RBM41	ENSG00000089682.17	ENST00000685964.1:ENST00000372487.5:ENST00000495517.5:ENST00000372479.7:ENST00000434854.1:ENST00000475556.1:ENST00000485676.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.99538	5.050445	5.10551	0.0613573	0.0112089	0.158506	0.071709
chr22	50683039	50683139	7755000	0	+	0.47	(0.45,0.485]	chr22	812717	3	SS3_PROX	SS3_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	53	2	4.49786	5.05042	5.60298	0.101311	0.00292492	0.196131	0.029882
chr17	82718243	82718343	6818060	0	+	0.59	(0.58,1]	chr17	689120	4	SS3_PROX	SS3_PROX:INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	267	2	4.91344	5.05014	5.18684	4.64224e-4	1.00604e-4	0.0124316	0.00275314
chr1	12569209	12569304	402287	0	-	0.4	(0.39,0.419]	chr1	46198	4	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.30157	5.050135	5.7987	0.0496288	0.0195328	0.160725	0.0955413
chr10	18557867	18557967	4642307	0	-	0.41	(0.39,0.419]	chr10	443321	55	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.30157	5.050135	5.7987	0.0496288	0.0195328	0.160725	0.0955413
chr12	31710512	31710610	5408984	0	-	0.408163	(0.39,0.419]	chr12	529683	7	INTRON	INTRON	AMN1	ENSG00000151743.11	ENST00000281471.11:ENST00000537562.5:ENST00000541931.5:ENST00000536761.5:ENST00000542781.5:ENST00000535408.5:ENST00000537960.5:ENST00000506446.6:ENST00000457428.6:ENST00000541541.5:ENST00000422146.6:ENST00000509386.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	4.30157	5.050135	5.7987	0.0496288	0.0195328	0.160725	0.0955413
chr6	144322238	144322338	3020230	0	+	0.41	(0.39,0.419]	chr6	295138	300	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.64779	5.050015	5.45224	0.032783	0.0273358	0.122593	0.119337
chr13	113497559	113497653	5658246	0	+	0.553191	(0.523,0.58]	chr13	555678	12	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000473287.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.65157	5.05001	5.44845	0.0787008	0.00361636	0.175203	0.0342681
chr7	940284	940384	3525827	0	-	0.54	(0.523,0.58]	chr7	340522	44	INTRON	INTRON	ADAP1:COX19	ENSG00000105963.15:ENSG00000240230.6	ENST00000265846.10:ENST00000539900.5:ENST00000611167.4:ENST00000649206.1:ENST00000457254.5:ENST00000463358.5:ENST00000477906.5:ENST00000435943.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.65157	5.05001	5.44845	0.0787008	0.00361636	0.175203	0.0342681
chr16	16038392	16038492	6406893	0	+	0.54	(0.523,0.58]	chr16	633041	14	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	50	2	4.84569	5.049860000000001	5.25403	0.0610722	0.00573579	0.158506	0.0467736
chr21	43903890	43903954	7624817	0	+	0.53125	(0.523,0.58]	chr21	796892	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.84569	5.049860000000001	5.25403	0.0610722	0.00573579	0.158506	0.0467736
chr8	27653511	27653610	3781328	0	+	0.393939	(0.39,0.419]	chr8	364266	15	INTRON	INTRON	SCARA3	ENSG00000168077.14	ENST00000337221.8:ENST00000301904.4	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.39622	5.049715	5.70321	0.042449	0.0226065	0.149195	0.102982
chr2	127302132	127302231	1264778	0	-	0.20202	[0,0.29]	chr2	136284	36	UTR3	UTR3:EXON_MRNA	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	5.04518	5.049635	5.05409	0.0318802	0.00813784	0.12158	0.0588114
chr5	134681485	134681581	2537668	0	+	0.270833	[0,0.29]	chr5	251718	14	INTRON	INTRON	SEC24A	ENSG00000113615.13	ENST00000398844.7:ENST00000322887.8:ENST00000513123.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	5.04518	5.049635	5.05409	0.0318802	0.00813784	0.12158	0.0588114
chr11	72756023	72756100	5070494	0	-	0.532468	(0.523,0.58]	chr11	493479	2	SS3_PROX	SS3_PROX:INTRON	ARAP1:STARD10	ENSG00000186635.15:ENSG00000214530.10	ENST00000359373.9:ENST00000334805.11:ENST00000543304.5:ENST00000537351.5:ENST00000538536.5:ENST00000538437.5:ENST00000543089.1:ENST00000545082.5:ENST00000544767.5:ENST00000537947.5:ENST00000536728.5:ENST00000400925.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	50	2	5.02927	5.04942	5.06957	0.0448011	0.0095202	0.140478	0.0650078
chr13	97345706	97345805	5632042	0	+	0.565657	(0.523,0.58]	chr13	553194	21	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	5.02927	5.04942	5.06957	0.0448011	0.0095202	0.140478	0.0650078
chr18	6139893	6139993	7111114	0	-	0.57	(0.523,0.58]	chr18	723852	12	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000400105.6:ENST00000317931.12:ENST00000400104.7	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.02927	5.04942	5.06957	0.0448011	0.0095202	0.140478	0.0650078
chr2	239270185	239270285	1391410	0	-	0.53	(0.523,0.58]	chr2	148740	186	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	50	2	5.02927	5.04942	5.06957	0.0448011	0.0095202	0.140478	0.0650078
chr1	44241814	44241914	459589	0	-	0.41	(0.39,0.419]	chr1	55301	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	117	2	4.21021	5.0492349999999995	5.88826	0.0169925	0.00174477	0.0889149	0.0210473
chr18	76417866	76417966	7179298	0	-	0.36	(0.33,0.36]	chr18	730080	372	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.77355	5.04923	5.32491	0.0735809	0.00634179	0.17026	0.0501889
chr18	75208260	75208360	7178679	0	-	0.63	(0.58,1]	chr18	730049	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZADH2	ENSG00000180011.7	ENST00000322342.4:ENST00000582437.1:ENST00000581620.1	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.58025	5.04919	5.51813	0.0172566	0.013519	0.0923809	0.0792526
chr19	1289586	1289685	7186900	0	+	0.676768	(0.58,1]	chr19	731132	29	INTRON	INTRON	EFNA2	ENSG00000099617.4	ENST00000215368.4	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.58025	5.04919	5.51813	0.0172566	0.013519	0.0923809	0.0792526
chr20	32476429	32476528	7543632	0	-	0.59596	(0.58,1]	chr20	787372	13	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.58025	5.04919	5.51813	0.0172566	0.013519	0.0923809	0.0792526
chr9	131587435	131587535	4418991	0	-	0.64	(0.58,1]	chr9	421910	3	SS5_PROX	SS5_PROX:INTRON	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000372189.7:ENST00000683357.1:ENST00000372190.7	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.58025	5.04919	5.51813	0.0172566	0.013519	0.0923809	0.0792526
chr13	112693145	112693245	5652571	0	+	0.49	(0.485,0.523]	chr13	554894	23	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5	protein_coding	protein_coding	protein_coding	protein_coding	2	290	2	4.58537	5.049165	5.51296	0.00306224	2.76859e-5	0.0352953	0.0010628
chr11	110169379	110169478	4938271	0	+	0.313131	(0.29,0.33]	chr11	476062	38	UTR3	UTR3:EXON_MRNA	ZC3H12C	ENSG00000149289.11	ENST00000278590.8:ENST00000453089.2	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.65868	5.049110000000001	5.43954	0.0735584	0.00401582	0.17026	0.0371286
chr1	248854051	248854145	709833	0	-	0.56383	(0.523,0.58]	chr1	83011	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ZNF692	ENSG00000171163.16	ENST00000463519.5:ENST00000306601.9:ENST00000366471.7:ENST00000533927.5:ENST00000476503.5:ENST00000477070.6:ENST00000412341.6:ENST00000482023.5:ENST00000451251.5:ENST00000470787.6:ENST00000462037.6:ENST00000474351.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	51	2	4.83424	5.048780000000001	5.26332	0.0337698	0.0144272	0.124319	0.0833845
chr10	131917189	131917289	4616188	0	+	0.55	(0.523,0.58]	chr10	441069	42	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.83424	5.048780000000001	5.26332	0.0337698	0.0144272	0.124319	0.0833845
chr11	70788749	70788848	5062169	0	-	0.555556	(0.523,0.58]	chr11	492701	709	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.83424	5.048780000000001	5.26332	0.0337698	0.0144272	0.124319	0.0833845
chr16	67601341	67601441	6472466	0	+	0.53	(0.523,0.58]	chr16	642672	284	INTRON	INTRON	CTCF	ENSG00000102974.16	ENST00000646076.1:ENST00000644852.1:ENST00000264010.10:ENST00000401394.6:ENST00000646771.1:ENST00000642847.1:ENST00000644753.1:ENST00000642819.1:ENST00000645306.1:ENST00000643892.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.83424	5.048780000000001	5.26332	0.0337698	0.0144272	0.124319	0.0833845
chr17	36512709	36512761	6889675	0	-	0.557692	(0.523,0.58]	chr17	699509	2	UTR3	UTR3:EXON_MRNA:INTRON	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000612097.1:ENST00000620413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	51	2	4.83424	5.048780000000001	5.26332	0.0337698	0.0144272	0.124319	0.0833845
chr19	18642237	18642337	7224391	0	+	0.55	(0.523,0.58]	chr19	739306	47	INTRON	INTRON	KLHL26	ENSG00000167487.12	ENST00000595182.5:ENST00000300976.9:ENST00000599006.5:ENST00000600657.5:ENST00000595423.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.83424	5.048780000000001	5.26332	0.0337698	0.0144272	0.124319	0.0833845
chr12	3226147	3226246	5160038	0	+	0.545455	(0.523,0.58]	chr12	501358	104	INTRON	INTRON	TSPAN9	ENSG00000011105.14	ENST00000537971.5:ENST00000444315.6:ENST00000011898.10:ENST00000649909.1:ENST00000640568.1:ENST00000407263.2:ENST00000431374.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	63	2	4.13061	5.048674999999999	5.96674	0.0533354	0.0109075	0.167062	0.0707085
chr22	48704031	48704131	7751308	0	+	0.55	(0.523,0.58]	chr22	812283	103	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	63	2	4.13061	5.048674999999999	5.96674	0.0533354	0.0109075	0.167062	0.0707085
chr1	62136421	62136521	153934	0	+	0.46	(0.45,0.485]	chr1	17527	71	INTRON	INTRON	PATJ	ENSG00000132849.22	ENST00000371158.6:ENST00000642238.2:ENST00000484937.5:ENST00000646453.1:ENST00000635137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	4.67139	5.048629999999999	5.42587	0.0290571	0.0223378	0.116079	0.108193
chr14	58419542	58419641	5989776	0	-	0.414141	(0.39,0.419]	chr14	587526	72	INTRON	INTRON	TIMM9	ENSG00000100575.14	ENST00000395159.7:ENST00000216463.8:ENST00000555593.5:ENST00000556007.6:ENST00000557397.5:ENST00000556367.6:ENST00000555930.6:ENST00000555404.5:ENST00000555097.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.88366	5.0485500000000005	5.21344	0.0707789	0.00893514	0.168159	0.0620271
chr18	48604537	48604637	7057310	0	+	0.41	(0.39,0.419]	chr18	720287	638	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.88366	5.0485500000000005	5.21344	0.0707789	0.00893514	0.168159	0.0620271
chr2	235802491	235802589	1065635	0	+	0.408163	(0.39,0.419]	chr2	115712	26	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.88366	5.0485500000000005	5.21344	0.0707789	0.00893514	0.168159	0.0620271
chr6	80280914	80281014	2946052	0	+	0.4	(0.39,0.419]	chr6	289898	73	INTRON	INTRON	BCKDHB	ENSG00000083123.15	ENST00000356489.9:ENST00000320393.9	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.88366	5.0485500000000005	5.21344	0.0707789	0.00893514	0.168159	0.0620271
chr5	109701935	109702035	2503496	0	+	0.51	(0.485,0.523]	chr5	248829	110	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5	protein_coding	protein_coding	protein_coding	protein_coding	1	111	2	3.80685	5.048455000000001	6.29006	0.00613935	0.00388927	0.0517628	0.0363508
chr13	100232343	100232443	5644417	0	+	0.52	(0.485,0.523]	chr13	554024	225	INTRON	INTRON	PCCA	ENSG00000175198.17	ENST00000376286.8:ENST00000376279.7:ENST00000376285.6:ENST00000647303.1:ENST00000637657.1:ENST00000636366.1:ENST00000636475.1:ENST00000636420.1:ENST00000637358.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.65198	5.048435	5.44489	0.0783889	0.00377098	0.175203	0.0353672
chr1	15052310	15052410	44935	0	+	0.49	(0.485,0.523]	chr1	4408	78	INTRON	INTRON	KAZN	ENSG00000189337.17	ENST00000636203.1:ENST00000376030.7:ENST00000491547.1:ENST00000503743.5:ENST00000361144.9:ENST00000400798.6:ENST00000376028.8:ENST00000400797.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	50	2	4.84611	5.0482949999999995	5.25048	0.0608067	0.0059614	0.158506	0.0479866
chr3	25663528	25663628	1717200	0	-	0.49	(0.485,0.523]	chr3	178230	177	INTRON	INTRON	TOP2B	ENSG00000077097.16	ENST00000264331.9:ENST00000435706.6:ENST00000424225.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.84611	5.0482949999999995	5.25048	0.0608067	0.0059614	0.158506	0.0479866
chr13	77245718	77245816	5733699	0	-	0.408163	(0.39,0.419]	chr13	562243	9	INTRON	INTRON	MYCBP2	ENSG00000005810.20	ENST00000683823.1:ENST00000684354.1:ENST00000682321.1:ENST00000695079.1:ENST00000683697.1:ENST00000357337.11:ENST00000544440.7:ENST00000695080.1:ENST00000695081.1:ENST00000695090.1:ENST00000695091.1:ENST00000695093.1:ENST00000695094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	51	2	5.04815	5.048254999999999	5.04836	0.0572698	0.0126072	0.154343	0.0768036
chr1	3472672	3472768	5838	0	+	0.614583	(0.58,1]	chr1	1237	2	SS3_PROX	SS3_PROX:INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5:ENST00000464620.1:ENST00000418137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	57	2	4.29454	5.04822	5.8019	0.0305531	0.007984	0.126768	0.0596361
chr4	123669228	123669328	2124284	0	+	0.38	(0.36,0.39]	chr4	215844	25	INTRON	INTRON	LINC01091	ENSG00000249464.7	ENST00000664622.1:ENST00000668501.1:ENST00000666490.1:ENST00000688140.1:ENST00000511919.6:ENST00000687307.1:ENST00000688939.1:ENST00000686783.1:ENST00000688429.1:ENST00000660330.1:ENST00000508111.6:ENST00000684936.1:ENST00000669505.1:ENST00000670311.2:ENST00000691879.1:ENST00000657410.1:ENST00000666756.1:ENST00000689676.1:ENST00000668255.1:ENST00000671094.2:ENST00000692159.1:ENST00000670449.1	lncRNA	lncRNA	lncRNA	lncRNA	0	53	2	4.72331	5.04819	5.37307	0.0361409	0.0236929	0.127853	0.111208
chr5	77767205	77767305	2697536	0	-	0.38	(0.36,0.39]	chr5	266385	520	INTRON	INTRON	TBCA	ENSG00000171530.15	ENST00000380377.9:ENST00000306388.10:ENST00000520361.5:ENST00000651106.1:ENST00000518338.6:ENST00000522370.1:ENST00000520039.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.72331	5.04819	5.37307	0.0361409	0.0236929	0.127853	0.111208
chr19	46977492	46977591	7275348	0	+	0.494949	(0.485,0.523]	chr19	747275	397	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	50	2	5.02573	5.04786	5.06999	0.0445854	0.00985879	0.140478	0.0664239
chr6	12074600	12074700	2854765	0	+	0.49	(0.485,0.523]	chr6	278961	355	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.02573	5.04786	5.06999	0.0445854	0.00985879	0.140478	0.0664239
chr15	40107666	40107758	6235235	0	-	0.586957	(0.58,1]	chr15	613047	9	INTRON	INTRON	BMF	ENSG00000104081.14	ENST00000354670.9:ENST00000558774.5:ENST00000559701.5:ENST00000557870.1:ENST00000560430.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.74346	5.0478000000000005	5.35214	0.0181452	0.0121457	0.0921579	0.0754623
chr16	85523779	85523879	6518309	0	+	0.69	(0.58,1]	chr16	646391	1645	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.74346	5.0478000000000005	5.35214	0.0181452	0.0121457	0.0921579	0.0754623
chr2	32503928	32504024	749290	0	+	0.614583	(0.58,1]	chr2	87424	3	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1:ENST00000497023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	50	2	4.74346	5.0478000000000005	5.35214	0.0181452	0.0121457	0.0921579	0.0754623
chr12	133039047	133039147	5354338	0	+	0.25	[0,0.29]	chr12	523869	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF84	ENSG00000198040.11	ENST00000392319.6:ENST00000543758.5:ENST00000438628.6:ENST00000540031.5:ENST00000539098.5:ENST00000539354.6:ENST00000539686.5:ENST00000536123.5:ENST00000327668.11:ENST00000543310.5:ENST00000545299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	4.54275	5.04773	5.55271	0.0681032	0.00239817	0.164448	0.0261006
chr10	18566960	18567060	4642398	0	-	0.38	(0.36,0.39]	chr10	443321	146	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	140	2	3.59342	5.047615	6.50181	0.0221422	3.87323e-4	0.101784	0.00729662
chr10	28559633	28559733	4469681	0	+	0.35	(0.33,0.36]	chr10	427649	212	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	154	2	3.36134	5.04739	6.73344	0.00457936	0.00333555	0.0404399	0.0368376
chr1	26256913	26257004	67241	0	+	0.472527	(0.45,0.485]	chr1	7342	7	INTRON	INTRON	CEP85	ENSG00000130695.16	ENST00000451429.8:ENST00000640292.2:ENST00000252992.8	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.88567	5.047365	5.20906	0.0399616	0.0146126	0.133954	0.0837727
chr5	651692	651791	2378799	0	+	0.616162	(0.58,1]	chr5	237646	34	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	102	2	4.26089	5.04732	5.83375	0.00751249	7.87512e-4	0.0576451	0.0120243
chr16	8711236	8711336	6381502	0	+	0.48	(0.45,0.485]	chr16	631147	278	INTRON	INTRON	ABAT	ENSG00000183044.12	ENST00000564714.5:ENST00000268251.13:ENST00000563992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	116	2	4.4113	5.0473	5.6833	0.0195193	8.48909e-4	0.0955413	0.0126615
chr1	14952335	14952434	43931	0	+	0.50505	(0.485,0.523]	chr1	4388	58	INTRON	INTRON	KAZN	ENSG00000189337.17	ENST00000636203.1:ENST00000376030.7:ENST00000491547.1:ENST00000503743.5:ENST00000361144.9:ENST00000400798.6:ENST00000376028.8:ENST00000400797.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	4.83072	5.047235000000001	5.26375	0.0335928	0.0148956	0.124319	0.0847741
chr2	101032478	101032571	1238897	0	-	0.483871	(0.45,0.485]	chr2	133727	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	TBC1D8	ENSG00000204634.13	ENST00000409318.2:ENST00000376840.8:ENST00000473937.5:ENST00000481317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	112	2	4.13561	5.047025	5.95844	0.0124835	0.0017907	0.0761905	0.0213868
chr17	61397639	61397738	6939776	0	-	0.636364	(0.58,1]	chr17	707563	23	INTRON	INTRON	TBX2-AS1	ENSG00000267280.6	ENST00000591313.6:ENST00000590421.1:ENST00000592009.1:ENST00000589814.5	lncRNA	lncRNA	lncRNA	lncRNA	0	48	2	4.94882	5.046895	5.14497	0.0354433	0.00474658	0.127188	0.0413976
chr3	125357368	125357457	1902599	0	-	0.651685	(0.58,1]	chr3	193000	2	SS5_PROX	SS5_PROX:INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000465763.5:ENST00000471196.1	protein_coding	protein_coding	protein_coding	protein_coding	1	104	2	4.42609	5.046535	5.66698	0.0102927	4.76485e-4	0.0684871	0.008444
chr2	65235053	65235153	820870	0	+	0.32	(0.29,0.33]	chr2	92697	67	INTRON	INTRON	ACTR2	ENSG00000138071.15	ENST00000476840.5:ENST00000260641.10:ENST00000471552.5:ENST00000377982.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	110	2	4.06424	5.046455	6.02867	0.00880071	0.0020563	0.0630883	0.0235218
chr12	95945983	95946080	5296755	0	+	0.360825	(0.36,0.39]	chr12	515477	21	INTRON	INTRON	AMDHD1	ENSG00000139344.8	ENST00000266736.7:ENST00000548310.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	65	2	4.09186	5.046424999999999	6.00099	0.0687088	0.0139273	0.193274	0.0805916
chr21	29494743	29494843	7605608	0	+	0.47	(0.45,0.485]	chr21	794472	1330	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000422809.5:ENST00000468059.1	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.5725	5.046195	5.51989	0.0926859	0.00357389	0.188571	0.0342681
chr9	94914516	94914616	4189126	0	+	0.46	(0.45,0.485]	chr9	398069	1041	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000277198.6:ENST00000297979.9:ENST00000424143.5	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.5725	5.046195	5.51989	0.0926859	0.00357389	0.188571	0.0342681
chr9	124654507	124654607	4404190	0	-	0.47	(0.45,0.485]	chr9	419893	588	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.5725	5.046195	5.51989	0.0926859	0.00357389	0.188571	0.0342681
chr4	2655429	2655529	1999232	0	+	0.48	(0.45,0.485]	chr4	203790	3	SS5_PROX	SS5_PROX:INTRON	FAM193A	ENSG00000125386.16	ENST00000637812.2:ENST00000324666.9:ENST00000382839.7:ENST00000512465.5:ENST00000545951.5:ENST00000502458.5:ENST00000513898.5:ENST00000505311.5:ENST00000513350.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	140	2	3.17691	5.046025	6.91514	0.0393744	8.2790699999999993e-05	0.132578	0.00237398
chr19	33505369	33505468	7365907	0	-	0.666667	(0.58,1]	chr19	763467	40	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000651646.1:ENST00000590408.1:ENST00000593163.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.88945	5.04584	5.20223	0.0388928	0.00411607	0.131324	0.0374453
chr8	143486746	143486846	4096460	0	-	0.59	(0.58,1]	chr8	389272	14	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6:ENST00000528401.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	5.00585	5.0455950000000005	5.08534	0.0323732	0.00549379	0.121593	0.0454065
chr6	63658969	63659069	2934495	0	+	0.28	[0,0.29]	chr6	288800	118	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.82096	5.04549	5.27002	0.0456837	0.0048238	0.142336	0.0417661
chr15	99809163	99809263	6199902	0	+	0.41	(0.39,0.419]	chr15	610055	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000259363	ENSG00000259363.6	ENST00000559714.6:ENST00000653567.1:ENST00000664279.1:ENST00000661885.1:ENST00000670817.1:ENST00000560059.6:ENST00000670627.1:ENST00000668719.1:ENST00000656644.1:ENST00000662069.1:ENST00000660061.1:ENST00000664300.1:ENST00000558188.2:ENST00000665821.1:ENST00000662997.1:ENST00000670236.1	lncRNA	lncRNA	lncRNA	lncRNA	0	65	2	4.09132	5.045475	5.99963	0.0689553	0.0142473	0.193274	0.0817691
chr10	112697865	112697965	4588979	0	+	0.4	(0.39,0.419]	chr10	438722	285	INTRON	INTRON	VTI1A	ENSG00000151532.14	ENST00000393077.3:ENST00000432306.5	protein_coding	protein_coding	protein_coding	protein_coding	1	116	2	4.14584	5.04543	5.94502	0.0155393	0.00205794	0.0849828	0.0235341
chr6	125830671	125830771	3001379	0	+	0.38	(0.36,0.39]	chr6	293588	149	INTRON	INTRON	NCOA7	ENSG00000111912.20	ENST00000368357.7:ENST00000417494.5:ENST00000453302.5:ENST00000392477.7:ENST00000229634.13:ENST00000428318.1:ENST00000419660.1:ENST00000487635.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.82572	5.0454	5.26508	0.0751666	0.00795848	0.172839	0.0578938
chr11	70742983	70743083	5061711	0	-	0.57	(0.523,0.58]	chr11	492701	251	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	60	2	4.23973	5.045299999999999	5.85087	0.0444247	0.0132767	0.153511	0.0787251
chr11	66098272	66098372	4873997	0	+	0.4	(0.39,0.419]	chr11	468991	137	INTRON	INTRON	PACS1	ENSG00000175115.13	ENST00000320580.9:ENST00000527224.1:ENST00000533756.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	116	2	3.80039	5.04515	6.28991	0.00887176	0.00484195	0.0634853	0.0418176
chr22	29982922	29983021	7710362	0	+	0.373737	(0.36,0.39]	chr22	806678	35	INTRON	INTRON	MTMR3	ENSG00000100330.16	ENST00000333027.7:ENST00000401950.7:ENST00000445401.5:ENST00000323630.9:ENST00000351488.7:ENST00000415511.1:ENST00000406629.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.98942	5.04491	5.1004	0.0526991	0.0141427	0.14912	0.0833845
chr16	87124643	87124743	6652482	0	-	0.45	(0.419,0.45]	chr16	665579	404	INTRON	INTRON	C16orf95	ENSG00000260456.7	ENST00000562840.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	52	2	4.69033	5.044835	5.39934	0.0958674	0.00646489	0.189038	0.0503748
chr16	16037995	16038095	6406889	0	+	0.41	(0.39,0.419]	chr16	633041	10	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	4.82439	5.044449999999999	5.26451	0.0762206	0.00800901	0.174484	0.0580954
chr16	11791223	11791323	6549975	0	-	0.58	(0.523,0.58]	chr16	652048	83	INTRON	INTRON	ZC3H7A	ENSG00000122299.12	ENST00000355758.9:ENST00000571198.5:ENST00000575170.1:ENST00000576018.5:ENST00000572781.5:ENST00000574995.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	109	2	3.98894	5.044275	6.09961	0.00866655	0.00237791	0.0623824	0.026
chr16	58161801	58161899	6598358	0	-	0.469388	(0.45,0.485]	chr16	659848	24	EXON_MRNA	EXON_MRNA:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	150	2	3.69998	5.044230000000001	6.38848	0.0059625	0.00174842	0.0506812	0.0210767
chr10	95358501	95358601	4733218	0	-	0.35	(0.33,0.36]	chr10	451905	3	INTRON	INTRON	SORBS1	ENSG00000095637.23	ENST00000371227.8:ENST00000306402.10:ENST00000371249.6:ENST00000371247.7:ENST00000371246.6:ENST00000634504.1:ENST00000607232.5:ENST00000361941.7:ENST00000277982.9:ENST00000371245.7:ENST00000371241.5:ENST00000354106.7:ENST00000371239.5:ENST00000474353.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	4.40703	5.04406	5.68109	0.0390931	0.0201622	0.142605	0.0973366
chr7	47479403	47479503	3588602	0	-	0.62	(0.58,1]	chr7	346123	263	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	121	2	3.79598	5.04402	6.29206	0.00940557	1.89825e-4	0.0653252	0.0043642
chr10	28062524	28062624	4653017	0	-	0.41	(0.39,0.419]	chr10	444361	24	INTRON	INTRON	MPP7	ENSG00000150054.19	ENST00000683449.1:ENST00000375732.5:ENST00000337532.9:ENST00000496637.6:ENST00000375719.7:ENST00000441595.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.98886	5.04396	5.09906	0.0535378	0.0142222	0.150319	0.0833845
chr3	65539359	65539458	1810859	0	-	0.393939	(0.39,0.419]	chr3	187255	66	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5:ENST00000476403.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	51	2	4.98886	5.04396	5.09906	0.0535378	0.0142222	0.150319	0.0833845
chr9	114074390	114074459	4373772	0	-	0.405797	(0.39,0.419]	chr9	418048	3	SS3_PROX	SS3_PROX:INTRON	AMBP	ENSG00000106927.12	ENST00000265132.8:ENST00000540645.5:ENST00000466610.6:ENST00000603230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	155	2	3.61317	5.04396	6.47475	0.00649594	0.0025863	0.0532359	0.0276257
chr5	154859252	154859352	2572971	0	+	0.54	(0.523,0.58]	chr5	255685	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CNOT8	ENSG00000155508.14	ENST00000521174.5:ENST00000523270.1:ENST00000518782.5:ENST00000523698.5:ENST00000517876.5:ENST00000520472.5:ENST00000519211.5:ENST00000522458.5:ENST00000403027.6:ENST00000521450.5:ENST00000519903.5:ENST00000517568.5:ENST00000524105.5:ENST00000519430.5:ENST00000285896.11:ENST00000521583.5:ENST00000520671.5:ENST00000518028.5:ENST00000519404.5:ENST00000521729.5:ENST00000519394.5:ENST00000518775.5:ENST00000522644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	50	2	4.96714	5.04382	5.1205	0.0416463	0.0108948	0.136301	0.0706366
chr13	75408986	75409086	5727274	0	-	0.34	(0.33,0.36]	chr13	561722	318	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	1	116	2	3.66018	5.043585	6.42699	0.00637415	0.00578704	0.0501889	0.0501412
chr16	85393434	85393534	6517005	0	+	0.48	(0.45,0.485]	chr16	646391	341	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.50852	5.0435300000000005	5.57854	0.0302873	0.0230065	0.126768	0.102982
chr2	127496648	127496747	1266281	0	-	0.474747	(0.45,0.485]	chr2	136447	1	INTRON	INTRON	IWS1	ENSG00000163166.15	ENST00000295321.9	protein_coding	protein_coding	protein_coding	protein_coding	2	185	2	3.017	5.0431	7.0692	0.0261458	5.23249e-5	0.110034	0.0016991
chr1	8812895	8812994	395690	0	-	0.292929	(0.29,0.33]	chr1	45089	60	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.95831	5.043005	5.1277	0.0382902	0.0118616	0.131324	0.0746945
chr6	167964754	167964845	3074760	0	+	0.307692	(0.29,0.33]	chr6	298971	6	EXON_MRNA	EXON_MRNA:INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000392112.5:ENST00000400822.7:ENST00000447894.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7:ENST00000507704.5:ENST00000515794.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	50	2	4.95831	5.043005	5.1277	0.0382902	0.0118616	0.131324	0.0746945
chr10	15141272	15141353	4636552	0	-	0.493827	(0.485,0.523]	chr10	443028	4	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NMT2	ENSG00000152465.18	ENST00000378165.9:ENST00000378150.1:ENST00000478580.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.78426	5.042925	5.30159	0.0660335	0.00529578	0.162385	0.044517
chr3	53509218	53509317	1476545	0	+	0.515152	(0.485,0.523]	chr3	158748	71	INTRON	INTRON	CACNA1D	ENSG00000157388.20	ENST00000637424.1:ENST00000288139.11:ENST00000350061.11:ENST00000636938.1:ENST00000636480.1:ENST00000422281.7:ENST00000636570.1:ENST00000640483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	50	2	4.78426	5.042925	5.30159	0.0660335	0.00529578	0.162385	0.044517
chr9	120875580	120875680	4387841	0	-	0.49	(0.485,0.523]	chr9	418714	3	SS5_PROX	SS5_PROX:INTRON	PHF19	ENSG00000119403.15	ENST00000373896.8:ENST00000616568.5:ENST00000436309.5:ENST00000312189.10:ENST00000456291.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.78426	5.042925	5.30159	0.0660335	0.00529578	0.162385	0.044517
chr19	16458415	16458515	7344550	0	-	0.72	(0.58,1]	chr19	760800	158	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5:ENST00000597937.5:ENST00000593760.5:ENST00000596037.5:ENST00000597559.5:ENST00000602151.1:ENST00000595845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	129	2	4.18524	5.042895	5.90055	0.00425781	6.1741e-4	0.0422596	0.0101143
chr22	36146039	36146139	7805891	0	-	0.63	(0.58,1]	chr22	817817	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	APOL3	ENSG00000128284.20	ENST00000424878.4:ENST00000361710.6:ENST00000397287.6:ENST00000349314.6:ENST00000397289.6:ENST00000397293.6:ENST00000422426.5:ENST00000432700.5:ENST00000531195.2:ENST00000487355.5:ENST00000487423.5:ENST00000426939.6:ENST00000534251.1:ENST00000695564.1:ENST00000487783.5:ENST00000525184.1:ENST00000485453.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	53	2	4.49116	5.042815	5.59447	0.0207449	0.0117666	0.102713	0.0737098
chr1	78133305	78133404	165141	0	+	0.424242	(0.419,0.45]	chr1	18816	70	INTRON	INTRON	GIPC2	ENSG00000137960.6	ENST00000370759.4	protein_coding	protein_coding	protein_coding	protein_coding	1	121	2	3.56166	5.042619999999999	6.52358	0.00882182	0.00689831	0.061625	0.0553728
chr14	103684845	103684915	5924682	0	+	0.428571	(0.419,0.45]	chr14	579655	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000380038.7:ENST00000334553.11:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8:ENST00000537046.6:ENST00000553325.5:ENST00000555856.1:ENST00000535194.2:ENST00000553680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	51	2	4.9329	5.04252	5.15214	0.0716557	0.0109324	0.168159	0.0706366
chr16	47609425	47609525	6444409	0	+	0.45	(0.419,0.45]	chr16	639156	115	INTRON	INTRON	PHKB	ENSG00000102893.17	ENST00000566044.5:ENST00000299167.12:ENST00000696809.1:ENST00000323584.10:ENST00000568439.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.9329	5.04252	5.15214	0.0716557	0.0109324	0.168159	0.0706366
chr10	34113452	34113551	4664757	0	-	0.434343	(0.419,0.45]	chr10	445378	15	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.98767	5.042425	5.09718	0.0669167	0.012235	0.16272	0.0757339
chr13	113060292	113060392	5656240	0	+	0.44	(0.419,0.45]	chr13	555190	3	SS3_PROX	SS3_PROX:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.98767	5.042425	5.09718	0.0669167	0.012235	0.16272	0.0757339
chr18	48604737	48604837	7057312	0	+	0.45	(0.419,0.45]	chr18	720287	640	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.98767	5.042425	5.09718	0.0669167	0.012235	0.16272	0.0757339
chr7	212968	213067	3305784	0	+	0.444444	(0.419,0.45]	chr7	320161	36	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.98767	5.042425	5.09718	0.0669167	0.012235	0.16272	0.0757339
chr1	21605468	21605565	419501	0	-	0.618557	(0.58,1]	chr1	48926	12	INTRON	INTRON	RAP1GAP	ENSG00000076864.21	ENST00000374765.9:ENST00000471600.6:ENST00000374761.6:ENST00000374763.6:ENST00000542643.6:ENST00000611549.4:ENST00000495204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.82753	5.04242	5.25731	0.0427798	0.00358178	0.13762	0.0342681
chr12	132538841	132538940	5353004	0	+	0.636364	(0.58,1]	chr12	523670	105	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.82753	5.04242	5.25731	0.0427798	0.00358178	0.13762	0.0342681
chr17	77355496	77355596	6803914	0	+	0.6	(0.58,1]	chr17	686742	313	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	4.82753	5.04242	5.25731	0.0427798	0.00358178	0.13762	0.0342681
chr19	2335619	2335718	7189477	0	+	0.656566	(0.58,1]	chr19	731782	5	INTRON	INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	4.82753	5.04242	5.25731	0.0427798	0.00358178	0.13762	0.0342681
chr22	19816819	19816919	7764392	0	-	0.67	(0.58,1]	chr22	813901	40	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.82753	5.04242	5.25731	0.0427798	0.00358178	0.13762	0.0342681
chr6	169575538	169575638	3303610	0	-	0.59	(0.58,1]	chr6	319808	26	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	4.82753	5.04242	5.25731	0.0427798	0.00358178	0.13762	0.0342681
chr2	239291769	239291869	1391626	0	-	0.54	(0.523,0.58]	chr2	148740	402	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	52	2	4.50593	5.042365	5.5788	0.094303	0.00262418	0.188571	0.0278348
chr10	34811476	34811576	4671773	0	-	0.5	(0.485,0.523]	chr10	445543	1147	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.96361	5.042265	5.12092	0.0414411	0.0112713	0.136301	0.071709
chr14	94309535	94309635	6046268	0	-	0.49	(0.485,0.523]	chr14	593050	4	SS5_PROX	SS5_PROX:INTRON	SERPINA6	ENSG00000170099.6	ENST00000341584.4:ENST00000555056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	4.96361	5.042265	5.12092	0.0414411	0.0112713	0.136301	0.071709
chr17	77349899	77349999	6803858	0	+	0.49	(0.485,0.523]	chr17	686742	257	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	50	2	4.96361	5.042265	5.12092	0.0414411	0.0112713	0.136301	0.071709
chr14	102627912	102628012	5919224	0	+	0.36	(0.33,0.36]	chr14	578976	342	INTRON	INTRON	RCOR1	ENSG00000089902.10	ENST00000262241.7	protein_coding	protein_coding	protein_coding	protein_coding	1	113	2	3.94543	5.042205	6.13898	0.00953039	0.0031765	0.0658012	0.0316024
chr3	190554693	190554793	1659902	0	+	0.44	(0.419,0.45]	chr3	173921	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	IL1RAP	ENSG00000196083.10	ENST00000072516.7:ENST00000439062.6:ENST00000447382.6:ENST00000422625.5:ENST00000422485.5:ENST00000317757.7:ENST00000413869.5:ENST00000342550.6:ENST00000422940.5:ENST00000434491.5:ENST00000461629.1:ENST00000473566.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	54	2	4.63955	5.042009999999999	5.44447	0.0364384	0.0293406	0.128173	0.125102
chr17	72559520	72559619	6963906	0	-	0.585859	(0.58,1]	chr17	710389	251	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	48	2	5.02314	5.041919999999999	5.0607	0.029633	0.00638322	0.116079	0.0501889
chr19	39158543	39158642	7259594	0	+	0.636364	(0.58,1]	chr19	744161	13	INTRON	INTRON	PAK4	ENSG00000130669.17	ENST00000602004.1:ENST00000599470.5:ENST00000360442.8:ENST00000321944.8:ENST00000593480.5:ENST00000358301.7:ENST00000593690.5:ENST00000599386.5:ENST00000599657.5	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	5.02314	5.041919999999999	5.0607	0.029633	0.00638322	0.116079	0.0501889
chr8	725563	725662	3932986	0	-	0.626263	(0.58,1]	chr8	376060	92	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	5.02314	5.041919999999999	5.0607	0.029633	0.00638322	0.116079	0.0501889
chr2	138567258	138567356	904552	0	+	0.397959	(0.39,0.419]	chr2	101982	19	INTRON	INTRON	SPOPL	ENSG00000144228.9	ENST00000280098.9:ENST00000420679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	155	2	3.64804	5.041855	6.43567	0.00694268	0.00236394	0.0553898	0.0259199
chr21	43946729	43946829	7625248	0	+	0.46	(0.45,0.485]	chr21	796903	209	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.9538	5.04159	5.12938	0.0569772	0.00873194	0.154343	0.0612699
chr3	187067600	187067699	1651669	0	+	0.454545	(0.45,0.485]	chr3	173706	26	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000676633.1:ENST00000448044.5:ENST00000416235.6:ENST00000448449.1:ENST00000442023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	4.9538	5.04159	5.12938	0.0569772	0.00873194	0.154343	0.0612699
chr7	112174505	112174605	3692253	0	-	0.34	(0.33,0.36]	chr7	354969	1700	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	117	2	4.36858	5.041485	5.71439	0.0191308	0.00105616	0.0952349	0.0147548
chr13	113589142	113589242	5658891	0	+	0.3	(0.29,0.33]	chr13	555775	29	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	52	2	4.51301	5.04144	5.56987	0.0885563	0.0029307	0.183874	0.0298918
chr14	91157338	91157438	5898906	0	+	0.33	(0.29,0.33]	chr14	576320	3	SS3_PROX	SS3_PROX:INTRON	DGLUCY	ENSG00000133943.21	ENST00000521334.5:ENST00000522837.5:ENST00000518871.5:ENST00000520328.5:ENST00000521081.5:ENST00000524232.5:ENST00000522170.5:ENST00000256324.15:ENST00000519950.5:ENST00000523879.5:ENST00000521077.6:ENST00000518665.6:ENST00000519994.5:ENST00000523837.5:ENST00000518868.5:ENST00000518649.5:ENST00000519019.5:ENST00000523816.5:ENST00000517518.5:ENST00000428926.6:ENST00000517362.5:ENST00000523894.5:ENST00000522322.5:ENST00000523771.5:ENST00000521064.5:ENST00000525393.6:ENST00000412671.6:ENST00000298858.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	52	2	4.51301	5.04144	5.56987	0.0885563	0.0029307	0.183874	0.0298918
chr17	60202387	60202486	6936635	0	-	0.414141	(0.39,0.419]	chr17	707276	36	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000592339.5	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.63037	5.041415000000001	5.45246	0.0963077	0.00529344	0.189169	0.044517
chr11	72772350	72772450	5070665	0	-	0.59	(0.58,1]	chr11	493498	126	INTRON	INTRON	ARAP1:STARD10	ENSG00000186635.15:ENSG00000214530.10	ENST00000359373.9:ENST00000334805.11:ENST00000543304.5:ENST00000538536.5:ENST00000538437.5:ENST00000545082.5:ENST00000537947.5:ENST00000542989.5:ENST00000546314.5:ENST00000535267.1:ENST00000539138.1:ENST00000535054.1:ENST00000536290.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	49	2	4.62403	5.041375	5.45872	0.0578275	0.00211999	0.154343	0.0239744
chr10	102648114	102648214	4576505	0	+	0.63	(0.58,1]	chr10	437280	19	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	101	2	4.15724	5.041259999999999	5.92528	0.0062948	0.00107173	0.0523832	0.0148869
chr1	43562014	43562113	107059	0	+	0.535354	(0.523,0.58]	chr1	13192	77	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	4.60868	5.04125	5.47382	0.0244797	0.0226775	0.108193	0.106683
chr13	112969658	112969758	5655317	0	+	0.57	(0.523,0.58]	chr13	555119	2	SS5_PROX	SS5_PROX:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.60868	5.04125	5.47382	0.0244797	0.0226775	0.108193	0.106683
chr15	78040021	78040121	6336245	0	-	0.56	(0.523,0.58]	chr15	624588	95	INTRON	INTRON	TBC1D2B	ENSG00000167202.12	ENST00000300584.8:ENST00000409931.7:ENST00000435468.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.60868	5.04125	5.47382	0.0244797	0.0226775	0.108193	0.106683
chr2	239338191	239338291	1392092	0	-	0.57	(0.523,0.58]	chr2	148752	137	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	53	2	4.60868	5.04125	5.47382	0.0244797	0.0226775	0.108193	0.106683
chr3	39146922	39147022	1739958	0	-	0.54	(0.523,0.58]	chr3	180187	2	SS3_PROX	SS3_PROX:INTRON	CSRNP1	ENSG00000144655.15	ENST00000273153.10:ENST00000514182.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.60868	5.04125	5.47382	0.0244797	0.0226775	0.108193	0.106683
chr2	69500701	69500801	1175786	0	-	0.39	(0.36,0.39]	chr2	127986	4	SS3_PROX	SS3_PROX:INTRON	AAK1	ENSG00000115977.21	ENST00000409085.9:ENST00000606389.7:ENST00000409068.5:ENST00000623317.3:ENST00000489327.1:ENST00000406297.7:ENST00000624900.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	52	2	4.79458	5.04118	5.28778	0.0407706	0.0207145	0.135868	0.102713
chr11	125657246	125657346	4962397	0	+	0.24	[0,0.29]	chr11	479612	2	INTRON	INTRON	CHEK1	ENSG00000149554.14	ENST00000428830.6:ENST00000524737.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	4.61749	5.04099	5.46449	0.061376	0.00299691	0.158506	0.030427
chrX	124093564	124093655	7948208	0	+	0.285714	[0,0.29]	chrX	831672	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	STAG2	ENSG00000101972.20	ENST00000218089.13:ENST00000469481.1:ENST00000371160.5:ENST00000687852.1:ENST00000371145.8:ENST00000692982.1:ENST00000371157.7:ENST00000691035.1:ENST00000686127.1:ENST00000371144.7:ENST00000693144.1:ENST00000475602.2:ENST00000688971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	50	2	4.61749	5.04099	5.46449	0.061376	0.00299691	0.158506	0.030427
chr1	9294527	9294594	19599	0	+	0.507463	(0.485,0.523]	chr1	2202	1	UTR5	UTR5:EXON_MRNA:INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11:ENST00000450402.1	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.50634	5.040785	5.57523	0.0939553	0.00274261	0.188571	0.028553
chr1	245798141	245798241	698753	0	-	0.6	(0.58,1]	chr1	82352	93	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000490322.1:ENST00000493441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	103	2	3.79235	5.040744999999999	6.28914	0.00303562	0.00302484	0.0350226	0.0305643
chr1	230185290	230185390	360600	0	+	0.48	(0.45,0.485]	chr1	40633	66	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.89685	5.040615	5.18438	0.0614781	0.00773818	0.158506	0.0568726
chr1	16270741	16270841	404436	0	-	0.42	(0.419,0.45]	chr1	46538	136	INTRON	INTRON	FBXO42	ENSG00000037637.11	ENST00000375592.8	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.56048	5.040605	5.52073	0.0337332	0.0327198	0.133139	0.122543
chr8	122786545	122786645	3909701	0	+	0.42	(0.419,0.45]	chr8	373449	42	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.56048	5.040605	5.52073	0.0337332	0.0327198	0.133139	0.122543
chr16	81619282	81619381	6509489	0	+	0.525253	(0.523,0.58]	chr16	645921	84	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	52	2	4.68785	5.04056	5.39327	0.0277354	0.0194172	0.112851	0.0994526
chr6	10588013	10588113	2850427	0	+	0.45	(0.419,0.45]	chr6	278695	7	INTRON	INTRON	GCNT2	ENSG00000111846.20	ENST00000410107.5:ENST00000489225.5:ENST00000397423.7:ENST00000495262.7:ENST00000475577.5:ENST00000489819.5:ENST00000474518.1:ENST00000379597.7:ENST00000485764.1:ENST00000461400.1:ENST00000316170.9:ENST00000459872.1:ENST00000265012.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	51	2	4.87598	5.04053	5.20508	0.0768574	0.00979452	0.174882	0.0664239
chr2	63985516	63985616	1166693	0	-	0.31	(0.29,0.33]	chr2	127344	11	INTRON	INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.59993	5.0405	5.48107	0.0243639	0.0222022	0.113231	0.101857
chr22	37512831	37512929	7808335	0	-	0.326531	(0.29,0.33]	chr22	818439	7	INTRON	INTRON	CARD10	ENSG00000100065.15	ENST00000403299.5:ENST00000251973.10:ENST00000494166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	4.59993	5.0405	5.48107	0.0243639	0.0222022	0.113231	0.101857
chr6	170397374	170397473	3076553	0	+	0.636364	(0.58,1]	chr6	299192	14	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	2	135	2	3.79182	5.04048	6.28914	0.00303562	8.4316e-4	0.0350226	0.0125984
chr16	72174959	72175056	6620878	0	-	0.453608	(0.45,0.485]	chr16	663355	5	INTRON	INTRON	PMFBP1	ENSG00000118557.16	ENST00000540440.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.00859	5.040395	5.0722	0.052901	0.00988295	0.14912	0.0664239
chr2	46332493	46332592	784993	0	+	0.484848	(0.45,0.485]	chr2	89746	342	INTRON	INTRON	EPAS1	ENSG00000116016.14	ENST00000460015.1:ENST00000449347.5:ENST00000263734.5:ENST00000467888.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	5.00859	5.040395	5.0722	0.052901	0.00988295	0.14912	0.0664239
chr3	47955309	47955409	1764611	0	-	0.46	(0.45,0.485]	chr3	181976	266	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000633710.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.00859	5.040395	5.0722	0.052901	0.00988295	0.14912	0.0664239
chr20	33017958	33018058	7457474	0	+	0.48	(0.45,0.485]	chr20	776396	3	SS3_PROX	SS3_PROX:INTRON	BPIFB2	ENSG00000078898.7	ENST00000170150.4	protein_coding	protein_coding	protein_coding	protein_coding	1	113	2	3.73402	5.040285	6.34655	0.00642055	0.0049945	0.0529785	0.0428203
chr2	229819211	229819311	1380842	0	-	0.45	(0.419,0.45]	chr2	147548	3	INTRON	INTRON	TRIP12	ENSG00000153827.14	ENST00000675453.1:ENST00000675903.1:ENST00000283943.9:ENST00000675423.1:ENST00000389044.8:ENST00000389045.7:ENST00000479037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	5.04004	5.040235	5.04043	0.0625897	0.0137308	0.160305	0.0814223
chr5	64970915	64971015	2433800	0	+	0.45	(0.419,0.45]	chr5	242426	4	SS5_PROX	SS5_PROX:INTRON	CWC27	ENSG00000153015.17	ENST00000693303.1:ENST00000381070.8:ENST00000691921.1:ENST00000688318.1:ENST00000693660.1:ENST00000687314.1:ENST00000693121.1:ENST00000692005.1:ENST00000607786.2:ENST00000692572.1:ENST00000687101.1:ENST00000545000.2:ENST00000685147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	51	2	5.04004	5.040235	5.04043	0.0625897	0.0137308	0.160305	0.0814223
chr6	24711075	24711173	3111318	0	-	0.438776	(0.419,0.45]	chr6	301651	18	INTRON	INTRON	C6orf62	ENSG00000112308.13	ENST00000378119.9:ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	5.04004	5.040235	5.04043	0.0625897	0.0137308	0.160305	0.0814223
chr22	46615485	46615585	7744330	0	+	0.63	(0.58,1]	chr22	812034	378	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000447351.5:ENST00000431155.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.81862	5.04	5.26138	0.021217	0.0102696	0.0996078	0.0678072
chr22	46956605	46956705	7746961	0	+	0.64	(0.58,1]	chr22	812232	428	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.81862	5.04	5.26138	0.021217	0.0102696	0.0996078	0.0678072
chr10	48042226	48042326	4680788	0	-	0.56	(0.523,0.58]	chr10	446508	28	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	3	176	2	3.48997	5.039935	6.5899	0.00356891	0.00149918	0.0383188	0.0188303
chr2	121479220	121479319	1262518	0	-	0.323232	(0.29,0.33]	chr2	136083	89	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	136	2	3.99157	5.03968	6.08779	0.00879016	7.71544e-4	0.0630845	0.0118336
chr1	109555837	109555937	202104	0	+	0.45	(0.419,0.45]	chr1	22135	66	INTRON	INTRON	GNAI3	ENSG00000065135.12	ENST00000369851.7	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.7145	5.039225	5.36395	0.0407485	0.0256236	0.135868	0.115966
chr7	5478785	5478884	3536805	0	-	0.676768	(0.58,1]	chr7	341531	31	UTR3	UTR3:EXON_MRNA:INTRON	FBXL18	ENSG00000155034.20	ENST00000415009.5:ENST00000382368.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	102	2	3.85993	5.039225	6.21852	0.00350812	0.00251049	0.0379357	0.026941
chr5	122994029	122994129	2523110	0	+	0.39	(0.36,0.39]	chr5	250444	106	INTRON	INTRON	SNX24	ENSG00000064652.11	ENST00000513613.5:ENST00000511211.5:ENST00000513881.5:ENST00000395451.8:ENST00000261369.9:ENST00000506996.5:ENST00000511545.5:ENST00000502387.5:ENST00000503149.5:ENST00000510914.5:ENST00000507364.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.7639	5.039154999999999	5.31441	0.0811309	0.00715023	0.177951	0.0541241
chr17	46097697	46097797	6916871	0	-	0.49	(0.485,0.523]	chr17	704543	26	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000577114.2:ENST00000638269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	52	2	4.68434	5.039015	5.39369	0.0275819	0.0200045	0.112782	0.100864
chr16	89915832	89915929	6526336	0	+	0.690722	(0.58,1]	chr16	647720	3	INTRON	INTRON	ENSG00000267048:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000555427.1:ENST00000639847.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	1	118	2	4.91344	5.038985	5.16453	0.0249802	1.00604e-4	0.10758	0.00275314
chr9	109051291	109051391	4364267	0	-	0.38	(0.36,0.39]	chr9	416790	2	INTRON	INTRON	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000413712.6:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.92735	5.038465	5.14958	0.0493212	0.0160072	0.146207	0.0894586
chr16	50527238	50527337	6451206	0	+	0.353535	(0.33,0.36]	chr16	639838	3	INTRON	INTRON	ENSG00000260573	ENSG00000260573.4	ENST00000646992.1	lncRNA	lncRNA	lncRNA	lncRNA	1	113	2	4.09291	5.038354999999999	5.9838	0.0123642	0.00218298	0.0758857	0.0244273
chr3	23845485	23845585	1431187	0	+	0.41	(0.39,0.419]	chr3	152792	336	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	51	2	4.76257	5.03821	5.31385	0.0822354	0.0071966	0.179396	0.0543014
chr17	15468019	15468119	6860115	0	-	0.5	(0.485,0.523]	chr17	695071	5	INTRON	INTRON	TVP23C-CDRT4:CDRT4	ENSG00000259024.6:ENSG00000239704.11	ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	109	2	4.08129	5.038015	5.99474	0.0103305	0.00190029	0.0684871	0.0222417
chr10	34696919	34697018	4670627	0	-	0.454545	(0.45,0.485]	chr10	445543	1	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.64346	5.03759	5.43172	0.0850039	0.00440365	0.181766	0.0393688
chr2	152336819	152336919	925479	0	+	0.46	(0.45,0.485]	chr2	103058	7	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.64346	5.03759	5.43172	0.0850039	0.00440365	0.181766	0.0393688
chr7	2041517	2041617	3530647	0	-	0.48	(0.45,0.485]	chr7	340995	265	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.64346	5.03759	5.43172	0.0850039	0.00440365	0.181766	0.0393688
chr17	31341631	31341729	6717352	0	+	0.408163	(0.39,0.419]	chr17	674690	6	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000456735.6:ENST00000687863.1:ENST00000687027.1:ENST00000693617.1:ENST00000684826.1:ENST00000584328.1:ENST00000471572.6:ENST00000581790.5:ENST00000582892.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	51	2	4.92679	5.037509999999999	5.14823	0.0501234	0.0160946	0.147892	0.0896852
chr17	32551633	32551733	6884053	0	-	0.41	(0.39,0.419]	chr17	698835	547	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000577352.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	4.92679	5.037509999999999	5.14823	0.0501234	0.0160946	0.147892	0.0896852
chr2	89554700	89554800	1216639	0	-	0.54	(0.523,0.58]	chr2	131064	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000283196	ENSG00000283196.2	ENST00000636531.1:ENST00000635968.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	54	2	4.5249	5.037509999999999	5.55012	0.0266135	0.0217068	0.118113	0.100615
chr19	2337625	2337702	7189501	0	+	0.727273	(0.58,1]	chr19	731792	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1:ENST00000593243.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	120	2	3.5406	5.03745	6.5343	0.0154024	8.82891e-5	0.0849828	0.00248664
chr20	36316401	36316501	7469151	0	+	0.47	(0.45,0.485]	chr20	777805	95	INTRON	INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.83755	5.03745	5.23735	0.06646	0.00687715	0.162385	0.0526888
chr7	90412144	90412228	3411335	0	+	0.452381	(0.45,0.485]	chr7	329444	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLDN12	ENSG00000157224.16	ENST00000416322.5:ENST00000287916.8:ENST00000462636.5:ENST00000394604.5:ENST00000496677.6:ENST00000394605.2:ENST00000498033.5:ENST00000483862.5:ENST00000427904.1:ENST00000451941.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	50	2	4.83755	5.03745	5.23735	0.06646	0.00687715	0.162385	0.0526888
chr11	71485143	71485242	4887714	0	+	0.575758	(0.523,0.58]	chr11	471504	8	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NADSYN1	ENSG00000172890.13	ENST00000319023.7:ENST00000525200.5:ENST00000529840.5:ENST00000530055.5:ENST00000526039.6:ENST00000531236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	136	2	3.92088	5.037275	6.15367	0.0106834	5.76607e-4	0.0701326	0.00963379
chr16	23072479	23072548	6567074	0	-	0.333333	(0.33,0.36]	chr16	655178	2	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	USP31	ENSG00000103404.15	ENST00000219689.12:ENST00000567975.1	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.73368	5.03725	5.34082	0.0338211	0.0216127	0.124319	0.105648
chr17	963203	963303	6826467	0	-	0.36	(0.33,0.36]	chr17	690074	299	INTRON	INTRON	NXN	ENSG00000167693.17	ENST00000336868.8:ENST00000575171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	52	2	4.73368	5.03725	5.34082	0.0338211	0.0216127	0.124319	0.105648
chr6	43304412	43304480	2919187	0	+	0.352941	(0.33,0.36]	chr6	287082	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC22A7	ENSG00000137204.15	ENST00000372585.10:ENST00000372589.7:ENST00000372574.7	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.73368	5.03725	5.34082	0.0338211	0.0216127	0.124319	0.105648
chr10	75438794	75438894	4520545	0	+	0.46	(0.45,0.485]	chr10	432246	3	SS5_PROX	SS5_PROX:INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.01267	5.037025	5.06138	0.0492008	0.011221	0.146142	0.071709
chr17	81137199	81137299	6982874	0	-	0.46	(0.45,0.485]	chr17	713268	23	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	50	2	5.01267	5.037025	5.06138	0.0492008	0.011221	0.146142	0.071709
chr18	646491	646591	7102535	0	-	0.48	(0.45,0.485]	chr18	723343	41	INTRON	INTRON	TYMSOS	ENSG00000176912.6	ENST00000585033.1	lncRNA	lncRNA	lncRNA	lncRNA	0	50	2	5.01267	5.037025	5.06138	0.0492008	0.011221	0.146142	0.071709
chr9	129340658	129340753	4250344	0	+	0.452632	(0.45,0.485]	chr9	404662	14	INTRON	INTRON	LINC01503	ENSG00000233901.7	ENST00000427109.2:ENST00000654735.1:ENST00000654190.1:ENST00000657886.1:ENST00000661745.1:ENST00000436710.6:ENST00000660635.1:ENST00000657651.1:ENST00000665063.2:ENST00000667257.1:ENST00000690929.1:ENST00000654148.1:ENST00000444125.3:ENST00000666671.1:ENST00000660036.1:ENST00000657393.1:ENST00000659864.1	lncRNA	lncRNA	lncRNA	lncRNA	0	50	2	5.01267	5.037025	5.06138	0.0492008	0.011221	0.146142	0.071709
chr17	43544815	43544915	6739013	0	+	0.59	(0.58,1]	chr17	678631	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	7	751	2	5.00547	5.037005	5.06854	1.43728e-4	2.94162e-6	0.00669515	2.17062e-4
chr13	75392490	75392590	5727109	0	-	0.4	(0.39,0.419]	chr13	561722	153	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	1	115	2	4.10127	5.036925	5.97258	0.0148746	0.00230482	0.0833515	0.0254829
chr6	159712328	159712428	3300589	0	-	0.53	(0.523,0.58]	chr6	319519	191	INTRON	INTRON	SOD2	ENSG00000112096.19	ENST00000546087.5:ENST00000545162.5:ENST00000535561.5:ENST00000537657.5:ENST00000401980.3	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.58058	5.0369	5.49322	0.0860403	0.00324246	0.181766	0.0319521
chr2	3459228	3459317	711025	0	+	0.561798	(0.523,0.58]	chr2	83176	4	INTRON	INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000479955.5:ENST00000497597.5:ENST00000473348.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	146	2	3.7402	5.03683	6.33346	0.00571732	0.00139933	0.0498083	0.0179906
chr14	91221055	91221151	5899567	0	+	0.666667	(0.58,1]	chr14	576435	4	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	4.76284	5.0366	5.31036	0.0471737	0.00312721	0.143232	0.0311915
chr5	62419227	62419327	2429573	0	+	0.44	(0.419,0.45]	chr5	242103	1	SS5_PROX	SS5_PROX:INTRON	IPO11	ENSG00000086200.17	ENST00000514647.5:ENST00000424533.5:ENST00000505902.5:ENST00000325324.11:ENST00000506200.5:ENST00000409296.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.81671	5.036429999999999	5.25615	0.08258	0.00879729	0.179396	0.0615125
chrX	1423236	1423335	7965715	0	-	0.434343	(0.419,0.45]	chrX	834272	10	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.81671	5.036429999999999	5.25615	0.08258	0.00879729	0.179396	0.0615125
chrX	9492695	9492795	7842721	0	+	0.43	(0.419,0.45]	chrX	822398	269	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.81671	5.036429999999999	5.25615	0.08258	0.00879729	0.179396	0.0615125
chr1	93753776	93753871	536019	0	-	0.452632	(0.45,0.485]	chr1	62528	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	BCAR3	ENSG00000137936.18	ENST00000370244.5:ENST00000469315.1:ENST00000433544.1:ENST00000649852.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.81772	5.03641	5.2551	0.0373953	0.0167663	0.130656	0.0917029
chr3	17371074	17371174	1701065	0	-	0.46	(0.45,0.485]	chr3	177678	300	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000429924.6:ENST00000465884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.81772	5.03641	5.2551	0.0373953	0.0167663	0.130656	0.0917029
chr19	15646457	15646551	7215419	0	+	0.425532	(0.419,0.45]	chr19	737145	2	INTRON	INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1:ENST00000609670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	62	2	4.19215	5.036295	5.88044	0.0617113	0.0192645	0.18013	0.0954446
chr4	3178946	3179043	2003657	0	+	0.443299	(0.419,0.45]	chr4	204462	1	INTRON	INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000680291.1:ENST00000510626.5:ENST00000509043.1:ENST00000513326.5:ENST00000513639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	116	2	3.90437	5.036245	6.16812	0.0123115	0.00396391	0.0756356	0.0368027
chr3	126350645	126350744	1907175	0	-	0.494949	(0.485,0.523]	chr3	193539	64	INTRON	INTRON	KLF15	ENSG00000163884.4	ENST00000296233.4	protein_coding	protein_coding	protein_coding	protein_coding	1	113	2	4.4145200000000004	5.036215	5.65791	0.0181582	7.5951e-4	0.0921579	0.011724
chr9	129610473	129610572	4250935	0	+	0.808081	(0.58,1]	chr9	404743	9	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	1	132	2	4.27956	5.036195	5.79283	0.00349053	8.4246e-4	0.0379065	0.0125912
chr1	119646292	119646391	571153	0	-	0.444444	(0.419,0.45]	chr1	65538	198	INTRON	INTRON	ZNF697	ENSG00000143067.5	ENST00000421812.3	protein_coding	protein_coding	protein_coding	protein_coding	1	119	2	3.62473	5.036105	6.44748	0.00782663	0.00764608	0.0592048	0.0563517
chr2	190903811	190903909	975744	0	+	0.316327	(0.29,0.33]	chr2	107416	14	INTRON	INTRON	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000338435.8:ENST00000469774.1:ENST00000417154.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	50	2	4.72635	5.035985	5.34562	0.0672935	0.00501126	0.163263	0.0429092
chr5	82343058	82343154	2474815	0	+	0.489583	(0.485,0.523]	chr5	246880	9	INTRON	INTRON	ATP6AP1L	ENSG00000205464.13	ENST00000508366.5	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript	0	54	2	4.52142	5.03598	5.55054	0.0273555	0.0215787	0.119337	0.100612
chr1	1065251	1065351	1395	0	+	0.72	(0.58,1]	chr1	328	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000217801	ENSG00000217801.11	ENST00000688131.1:ENST00000456409.6:ENST00000692821.1:ENST00000394517.7:ENST00000427998.6:ENST00000685011.1:ENST00000692266.1:ENST00000412397.2:ENST00000433695.1:ENST00000451054.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	48	2	4.95814	5.035845	5.11355	0.0271806	0.0074469	0.112113	0.0553519
chr15	101353747	101353846	6363076	0	-	0.636364	(0.58,1]	chr15	627201	56	INTRON	INTRON	PCSK6	ENSG00000140479.18	ENST00000677364.1:ENST00000676598.1:ENST00000558951.5:ENST00000398185.6:ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000679007.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000559605.1:ENST00000560902.5:ENST00000611967.4:ENST00000615296.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	4.95814	5.035845	5.11355	0.0271806	0.0074469	0.112113	0.0553519
chr7	140048301	140048400	3724197	0	-	0.616162	(0.58,1]	chr7	357570	9	INTRON	INTRON	PARP12	ENSG00000059378.13	ENST00000263549.8:ENST00000473341.5:ENST00000488726.5:ENST00000489809.5:ENST00000491598.5:ENST00000493262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.95814	5.035845	5.11355	0.0271806	0.0074469	0.112113	0.0553519
chr10	48042027	48042127	4680786	0	-	0.55	(0.523,0.58]	chr10	446508	26	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	0	51	2	4.7629	5.035425	5.30795	0.0315825	0.0167014	0.120781	0.0917029
chr10	73708150	73708249	4716787	0	-	0.494949	(0.485,0.523]	chr10	449734	27	INTRON	INTRON	BMS1P4:ENSG00000272140	ENSG00000271816.1:ENSG00000272140.2	ENST00000580790.1:ENST00000415917.2:ENST00000580623.1	lncRNA	lncRNA	lncRNA	lncRNA	0	51	2	4.581	5.03533	5.48966	0.085711	0.0033837199999999998	0.181766	0.0328791
chr11	63872565	63872664	4867139	0	+	0.515152	(0.485,0.523]	chr11	466776	28	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5:ENST00000543674.1:ENST00000540169.5	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.581	5.03533	5.48966	0.085711	0.0033837199999999998	0.181766	0.0328791
chr17	72556427	72556526	6963875	0	-	0.515152	(0.485,0.523]	chr17	710389	220	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	51	2	4.581	5.03533	5.48966	0.085711	0.0033837199999999998	0.181766	0.0328791
chr7	79453789	79453850	3402815	0	+	0.540984	(0.523,0.58]	chr7	328674	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MAGI2-AS3	ENSG00000234456.10	ENST00000616796.4:ENST00000429408.6:ENST00000683943.1:ENST00000426835.6:ENST00000446159.6:ENST00000663669.1:ENST00000661940.1:ENST00000616192.5:ENST00000657546.1:ENST00000655337.2:ENST00000668746.1:ENST00000629211.2:ENST00000613892.4:ENST00000612949.5:ENST00000619135.4:ENST00000655795.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	141	2	4.09486	5.03533	5.9758	0.00778716	9.36996e-4	0.0590114	0.0135546
chr3	194645496	194645579	1980395	0	-	0.506024	(0.485,0.523]	chr3	201562	4	INTRON	INTRON	LSG1	ENSG00000041802.11	ENST00000265245.10:ENST00000475763.5:ENST00000460584.1:ENST00000437613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	50	2	4.71964	5.0352999999999994	5.35096	0.0718646	0.0047171	0.168159	0.0413976
chr2	200360952	200361051	986502	0	+	0.474747	(0.45,0.485]	chr2	108296	93	INTRON	INTRON	SPATS2L	ENSG00000196141.14	ENST00000439084.5:ENST00000409718.5:ENST00000358677.9:ENST00000409988.7:ENST00000409385.5:ENST00000439395.5:ENST00000444012.5:ENST00000451764.6:ENST00000360760.9:ENST00000423749.5:ENST00000457757.5:ENST00000471601.5:ENST00000428692.5:ENST00000453663.5:ENST00000409140.8:ENST00000459656.5:ENST00000471533.5:ENST00000409397.6:ENST00000619961.4:ENST00000409151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	477	2	4.61216	5.035185	5.45821	6.20507e-4	6.16084e-5	0.0146109	0.00191149
chr22	32802921	32803021	7717638	0	+	0.53	(0.523,0.58]	chr22	807776	4	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	0	62	2	4.13061	5.034625	5.93864	0.0533354	0.0114442	0.167062	0.0723462
chr17	38745967	38746067	6895635	0	-	0.58	(0.523,0.58]	chr17	700402	1	SS5_PROX	SS5_PROX:INTRON	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000611883.4:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	1	110	2	4.27978	5.03451	5.78924	0.0147166	0.00107949	0.0826843	0.0149203
chr14	103104914	103104991	5921866	0	+	0.649351	(0.58,1]	chr14	579216	2	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	333	2	5.0238	5.034509999999999	5.04522	6.75292e-4	1.32176e-5	0.0153083	6.28604e-4
chr13	113587646	113587745	5658876	0	+	0.494949	(0.485,0.523]	chr13	555775	14	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	50	2	4.8987	5.034409999999999	5.17012	0.038581	0.0129327	0.131324	0.0778105
chr13	113215361	113215460	5657361	0	+	0.59596	(0.58,1]	chr13	555523	49	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000488558.2:ENST00000375440.9:ENST00000474116.5:ENST00000494985.5:ENST00000463426.5:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	101	2	3.9245	5.034385	6.14427	0.00407804	0.00209574	0.0413652	0.0238576
chr2	11334901	11335001	1089304	0	-	0.3	(0.29,0.33]	chr2	118747	468	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	147	2	3.72733	5.0340549999999995	6.34078	0.00499711	0.00153921	0.0463896	0.0191897
chrX	48465614	48465714	8040344	0	-	0.53	(0.523,0.58]	chrX	838612	2	SS5_PROX	SS5_PROX:INTRON	SLC38A5	ENSG00000017483.16	ENST00000595796.5:ENST00000619100.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5:ENST00000416711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	117	2	4.59411	5.033965	5.47382	0.0244797	4.40994e-4	0.106683	0.00800597
chr2	73268525	73268625	1190614	0	-	0.52	(0.485,0.523]	chr2	129027	4	SS5_PROX	SS5_PROX:INTRON	FBXO41	ENSG00000163013.12	ENST00000295133.9:ENST00000520530.3:ENST00000521871.5	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.75939	5.03388	5.30837	0.0314138	0.0172254	0.12069	0.0923809
chr4	1879820	1879920	1996071	0	+	0.46	(0.45,0.485]	chr4	203459	79	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	135	2	3.69829	5.03323	6.36817	0.0169139	3.97249e-4	0.088829	0.00741985
chr14	103104650	103104737	5921862	0	+	0.770115	(0.58,1]	chr14	579214	4	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	223	2	2.84543	5.033165	7.2209	0.00288624	4.00118e-4	0.029709	0.0114335
chr4	140287873	140287971	2327535	0	-	0.469388	(0.45,0.485]	chr4	233796	43	EXON_LNCRNA	EXON_LNCRNA:INTRON	SCOC-AS1	ENSG00000196951.12	ENST00000512692.7:ENST00000658255.1:ENST00000664103.1	lncRNA	lncRNA	lncRNA	lncRNA	0	60	2	4.22352	5.033049999999999	5.84258	0.0496712	0.0151085	0.160725	0.0841543
chr10	91412565	91412664	4546541	0	+	0.333333	(0.33,0.36]	chr10	433731	16	INTRON	INTRON	HECTD2	ENSG00000165338.17	ENST00000631422.1:ENST00000446394.5:ENST00000298068.10:ENST00000371681.8	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	5.00642	5.032895	5.05937	0.0542065	0.0112642	0.151733	0.071709
chr17	62533282	62533382	6780097	0	+	0.36	(0.33,0.36]	chr17	683593	86	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	50	2	5.00642	5.032895	5.05937	0.0542065	0.0112642	0.151733	0.071709
chr2	179250692	179250792	1328268	0	-	0.36	(0.33,0.36]	chr2	141710	585	INTRON	INTRON	SESTD1	ENSG00000187231.14	ENST00000428443.8:ENST00000440010.5:ENST00000435047.5:ENST00000452991.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	5.00642	5.032895	5.05937	0.0542065	0.0112642	0.151733	0.071709
chr6	110737233	110737333	3233660	0	-	0.36	(0.33,0.36]	chr6	313452	150	INTRON	INTRON	CDK19	ENSG00000155111.15	ENST00000323817.7:ENST00000368911.8:ENST00000413605.6:ENST00000457688.5:ENST00000463016.1:ENST00000460913.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	50	2	5.00642	5.032895	5.05937	0.0542065	0.0112642	0.151733	0.071709
chr10	75729246	75729346	4523456	0	+	0.45	(0.419,0.45]	chr10	432271	813	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	194	2	3.6372	5.0325050000000005	6.42781	0.0080847	0.00144556	0.0602118	0.018413
chr20	25372850	25372949	7539278	0	-	0.474747	(0.45,0.485]	chr20	786928	304	INTRON	INTRON	ABHD12	ENSG00000100997.20	ENST00000376542.8:ENST00000339157.10:ENST00000672406.1:ENST00000672566.1:ENST00000673121.1:ENST00000471287.5:ENST00000461204.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	4.77571	5.032085	5.28846	0.0719884	0.00612862	0.168159	0.0489549
chr7	47472210	47472310	3588530	0	-	0.48	(0.45,0.485]	chr7	346123	191	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.77571	5.032085	5.28846	0.0719884	0.00612862	0.168159	0.0489549
chr16	85376441	85376541	6516835	0	+	0.66	(0.58,1]	chr16	646391	171	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.29454	5.03194	5.76934	0.0305531	0.00849371	0.126768	0.0617717
chr16	85452609	85452709	6517597	0	+	0.59	(0.58,1]	chr16	646391	933	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.3962	5.03159	5.66698	0.0250928	0.0102927	0.114418	0.0684871
chr19	39469747	39469840	7260793	0	+	0.645161	(0.58,1]	chr19	744432	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SUPT5H	ENSG00000196235.14	ENST00000599117.5:ENST00000402194.6:ENST00000432763.7:ENST00000359191.10:ENST00000598725.5:ENST00000599335.5:ENST00000598117.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	4.3962	5.03159	5.66698	0.0250928	0.0102927	0.114418	0.0684871
chr19	47720878	47720977	7278830	0	+	0.515152	(0.485,0.523]	chr19	747648	19	INTRON	INTRON	ENSG00000268746:EHD2	ENSG00000268746.1:ENSG00000024422.12	ENST00000599924.1:ENST00000263277.8:ENST00000538399.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	57	2	4.33772	5.03151	5.7253	0.03818	0.0162644	0.140822	0.0873195
chr16	572026	572121	6368135	0	+	0.473684	(0.45,0.485]	chr16	627950	9	INTRON	INTRON	PIGQ	ENSG00000007541.17	ENST00000293874.2:ENST00000409527.6:ENST00000321878.10:ENST00000439574.1:ENST00000422307.6:ENST00000636657.1:ENST00000026218.9:ENST00000470411.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	4.95056	5.03143	5.1123	0.0458344	0.0127826	0.142336	0.0773423
chr19	2442212	2442312	7309608	0	-	0.46	(0.45,0.485]	chr19	753890	33	INTRON	INTRON	LMNB2	ENSG00000176619.13	ENST00000325327.4	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.95056	5.03143	5.1123	0.0458344	0.0127826	0.142336	0.0773423
chr8	18673177	18673277	3948699	0	-	0.48	(0.45,0.485]	chr8	377197	171	INTRON	INTRON	PSD3	ENSG00000156011.18	ENST00000327040.13:ENST00000440756.4:ENST00000286485.12:ENST00000523619.5:ENST00000428502.6:ENST00000518315.5:ENST00000521878.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	50	2	4.95056	5.03143	5.1123	0.0458344	0.0127826	0.142336	0.0773423
chr11	64146355	64146455	5049041	0	-	0.63	(0.58,1]	chr11	490257	196	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	135	2	3.86807	5.031135	6.1942	0.00368616	6.66992e-4	0.0389784	0.0107349
chr4	886177	886276	2178464	0	-	0.59596	(0.58,1]	chr4	220626	5	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	135	2	3.86807	5.031135	6.1942	0.00368616	6.66992e-4	0.0389784	0.0107349
chr10	18564562	18564662	4642374	0	-	0.45	(0.419,0.45]	chr10	443321	122	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	2	159	2	3.22297	5.030810000000001	6.83865	0.00712864	0.00404244	0.0541241	0.0412991
chr1	8541113	8541213	392956	0	-	0.39	(0.36,0.39]	chr1	45025	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	54	2	4.56926	5.030749999999999	5.49224	0.031369	0.0304242	0.127822	0.11845
chr1	180682711	180682811	296901	0	+	0.39	(0.36,0.39]	chr1	33790	3	SS5_PROX	SS5_PROX:INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.69932	5.030715000000001	5.36211	0.0877431	0.00643924	0.183437	0.0503748
chr5	145832663	145832762	2783793	0	-	0.373737	(0.36,0.39]	chr5	272885	61	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000683046.1:ENST00000334744.8:ENST00000394450.6:ENST00000505416.5:ENST00000511435.1:ENST00000515475.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	61	2	4.20082	5.0306	5.86038	0.0581116	0.0174081	0.175217	0.0901374
chr7	149489215	149489315	3732546	0	-	0.34	(0.33,0.36]	chr7	358621	17	UTR3	UTR3:EXON_MRNA:INTRON	ZNF746	ENSG00000181220.18	ENST00000644635.1:ENST00000340622.8:ENST00000458143.7:ENST00000685153.1:ENST00000461958.2	protein_coding	protein_coding	protein_coding	protein_coding	1	112	2	3.97108	5.030085	6.08909	0.0103694	0.00297798	0.0686683	0.0302932
chr18	77034276	77034376	7180657	0	-	0.56	(0.523,0.58]	chr18	730157	166	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000580402.5:ENST00000580473.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000495162.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	4.23973	5.03006	5.82039	0.0444247	0.0139724	0.153511	0.0805959
chr22	37513422	37513520	7808341	0	-	0.540816	(0.523,0.58]	chr22	818439	13	INTRON	INTRON	CARD10	ENSG00000100065.15	ENST00000403299.5:ENST00000251973.10:ENST00000494166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	59	2	4.23973	5.03006	5.82039	0.0444247	0.0139724	0.153511	0.0805959
chr16	52473938	52474037	6589127	0	-	0.464646	(0.45,0.485]	chr16	658695	50	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	134	2	3.59988	5.030035	6.46019	0.0199597	3.07362e-4	0.0968284	0.00618726
chr2	239343086	239343186	1392141	0	-	0.34	(0.33,0.36]	chr2	148752	186	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	50	2	4.83538	5.02993	5.22448	0.0679743	0.00791583	0.164413	0.057762
chr10	103840312	103840412	4758508	0	-	0.67	(0.58,1]	chr10	454819	386	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.66416	5.0298099999999994	5.39546	0.0168207	0.0144381	0.0884836	0.0833845
chr12	124821305	124821404	5536927	0	-	0.59596	(0.58,1]	chr12	546095	32	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000415380.6:ENST00000681117.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000539320.3:ENST00000545493.1:ENST00000541661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	50	2	4.66416	5.0298099999999994	5.39546	0.0168207	0.0144381	0.0884836	0.0833845
chr22	21676013	21676113	7690784	0	+	0.59	(0.58,1]	chr22	804829	5	INTRON	INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000458567.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000679586.1:ENST00000680094.1:ENST00000484439.5:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000680022.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	50	2	4.66416	5.0298099999999994	5.39546	0.0168207	0.0144381	0.0884836	0.0833845
chr8	28530022	28530119	3783404	0	+	0.371134	(0.36,0.39]	chr8	364526	15	INTRON	INTRON	FZD3	ENSG00000104290.11	ENST00000537916.2:ENST00000240093.8	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.86249	5.0298099999999994	5.19713	0.0462258	0.0181775	0.143138	0.0955836
chr10	18557667	18557767	4642305	0	-	0.41	(0.39,0.419]	chr10	443321	53	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.56871	5.029795	5.49088	0.0315133	0.0309972	0.127889	0.119758
chr21	29047721	29047821	7602497	0	+	0.41	(0.39,0.419]	chr21	794358	4	SS5_PROX	SS5_PROX:INTRON	USP16	ENSG00000156256.15	ENST00000399975.7:ENST00000334352.8:ENST00000474835.5:ENST00000399976.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	4.69798	5.029765	5.36155	0.088901	0.00648185	0.183874	0.0503748
chr17	55090871	55090971	6756271	0	+	0.33	(0.29,0.33]	chr17	681673	93	INTRON	INTRON	STXBP4	ENSG00000166263.13	ENST00000376352.6:ENST00000434978.6	protein_coding	protein_coding	protein_coding	protein_coding	1	111	2	4.29471	5.0297	5.76469	0.0139072	0.00110371	0.0805904	0.0151788
chr11	64136196	64136296	5048939	0	-	0.45	(0.419,0.45]	chr11	490257	94	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	116	2	4.09462	5.029685000000001	5.96475	0.0169309	0.00248506	0.088829	0.0267262
chrX	2284114	2284214	7966682	0	-	0.28	[0,0.29]	chrX	834344	168	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.68855	5.02954	5.37053	0.0554735	0.00378192	0.154188	0.0354402
chr13	102785461	102785551	5749777	0	-	0.355556	(0.33,0.36]	chr13	563558	6	INTRON	INTRON	POGLUT2	ENSG00000134901.13	ENST00000376004.5:ENST00000460338.5:ENST00000484943.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.99985	5.029525	5.0592	0.0504445	0.0127452	0.148216	0.0773423
chr2	172028455	172028555	954888	0	+	0.37	(0.36,0.39]	chr2	104934	62	INTRON	INTRON	METAP1D	ENSG00000172878.14	ENST00000493035.5:ENST00000315796.5:ENST00000493742.1:ENST00000491440.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	156	2	3.25646	5.029485	6.80251	0.00627542	0.00357532	0.0499896	0.0383635
chr13	33588716	33588816	5688458	0	-	0.35	(0.33,0.36]	chr13	558262	640	INTRON	INTRON	ENSG00000230490	ENSG00000230490.4	ENST00000686875.1:ENST00000454681.2	lncRNA	lncRNA	lncRNA	lncRNA	1	139	2	4.94876	5.02944	5.11012	0.04702	2.08992e-4	0.143232	0.00466747
chr11	68342953	68343053	4882387	0	+	0.59	(0.58,1]	chr11	470542	298	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.58025	5.02932	5.47839	0.0172566	0.0145198	0.0923809	0.0823104
chr16	85453709	85453809	6517608	0	+	0.65	(0.58,1]	chr16	646391	944	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.58025	5.02932	5.47839	0.0172566	0.0145198	0.0923809	0.0823104
chr10	96076873	96076972	4739647	0	-	0.333333	(0.33,0.36]	chr10	452332	121	INTRON	INTRON	ENTPD1-AS1	ENSG00000226688.8	ENST00000669711.1:ENST00000416301.5:ENST00000451364.5:ENST00000671323.1:ENST00000656604.1:ENST00000452728.5:ENST00000684888.1:ENST00000454638.5:ENST00000668038.1:ENST00000686747.1:ENST00000693608.1:ENST00000458228.5:ENST00000691417.1:ENST00000427846.1	lncRNA	lncRNA	lncRNA	lncRNA	0	51	2	4.80497	5.028945	5.25292	0.0384256	0.0188359	0.131324	0.0980631
chr3	119667677	119667774	1884215	0	-	0.474227	(0.45,0.485]	chr3	191169	3	INTRON	INTRON	COX17	ENSG00000138495.7	ENST00000490145.1:ENST00000468918.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	53	2	4.59225	5.028915	5.46558	0.0273644	0.0259502	0.116361	0.112372
chr6	33263383	33263483	3121574	0	-	0.51	(0.485,0.523]	chr6	304222	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	VPS52	ENSG00000223501.9	ENST00000478934.5:ENST00000482399.5:ENST00000445902.3:ENST00000495981.5:ENST00000493674.5:ENST00000471309.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	131	2	3.54037	5.028895	6.51742	0.0206875	2.15808e-4	0.0985914	0.00477041
chr8	129281184	129281283	4073797	0	-	0.414141	(0.39,0.419]	chr8	387653	39	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000675388.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000675669.1:ENST00000644194.1:ENST00000675970.1:ENST00000671439.1:ENST00000676129.1:ENST00000657400.1:ENST00000646877.1:ENST00000656242.1:ENST00000676405.1:ENST00000657409.1:ENST00000666317.1:ENST00000654421.1:ENST00000662033.1:ENST00000674893.1:ENST00000670803.1:ENST00000667974.1:ENST00000657046.1:ENST00000662317.1:ENST00000670054.1:ENST00000675449.1:ENST00000675599.1:ENST00000674711.1:ENST00000656316.1:ENST00000662207.1:ENST00000653764.1:ENST00000662908.1:ENST00000664632.1:ENST00000665685.1:ENST00000660109.1:ENST00000666088.1:ENST00000662350.1:ENST00000654987.1:ENST00000676350.1:ENST00000675878.1:ENST00000669940.1:ENST00000664162.1:ENST00000666882.1:ENST00000668777.1:ENST00000666725.1:ENST00000676060.1:ENST00000655629.1:ENST00000668446.1:ENST00000664599.1:ENST00000653401.1:ENST00000671347.1:ENST00000666849.1:ENST00000670148.1:ENST00000664043.1:ENST00000674750.1:ENST00000674940.1:ENST00000660163.1:ENST00000669617.1:ENST00000653363.1:ENST00000670386.1:ENST00000675658.1:ENST00000676238.1:ENST00000675815.1:ENST00000675208.1:ENST00000665348.1	lncRNA	lncRNA	lncRNA	lncRNA	0	51	2	4.86193	5.02886	5.19579	0.0469937	0.0182739	0.143232	0.0958352
chr14	23309060	23309156	5756459	0	+	0.583333	(0.58,1]	chr14	564868	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BCL2L2:BCL2L2-PABPN1	ENSG00000129473.11:ENSG00000258643.6	ENST00000679219.1:ENST00000678311.1:ENST00000678502.1:ENST00000250405.10:ENST00000557579.2:ENST00000553781.5:ENST00000679000.1:ENST00000556100.3:ENST00000557008.2:ENST00000556599.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	137	2	3.33506	5.02874	6.72242	0.00321851	0.00121317	0.0319521	0.0210863
chr10	6092562	6092662	4441292	0	+	0.38	(0.36,0.39]	chr10	425350	22	INTRON	INTRON	RBM17	ENSG00000134453.16	ENST00000379888.9:ENST00000437845.6:ENST00000432931.5:ENST00000446108.5	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.56076	5.0285899999999994	5.49642	0.103289	0.00476539	0.197541	0.0414441
chr1	27344872	27344964	71354	0	+	0.597826	(0.58,1]	chr1	8039	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	SYTL1	ENSG00000142765.18	ENST00000618673.4:ENST00000318074.9:ENST00000616558.5:ENST00000483926.5:ENST00000473280.1:ENST00000543823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	100	2	4.10248	5.02851	5.95454	0.0059453	0.0012583	0.0506158	0.0167083
chr1	1044599	1044660	1173	0	+	0.655738	(0.58,1]	chr1	205	2	SS5_PROX	SS5_PROX:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.6951	5.028315	5.36153	0.0521567	0.00273899	0.148503	0.028553
chr14	104868655	104868755	5925898	0	+	0.7	(0.58,1]	chr14	579941	1	SS5_PROX	SS5_PROX:INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.6951	5.028315	5.36153	0.0521567	0.00273899	0.148503	0.028553
chr17	80876129	80876228	6812232	0	+	0.676768	(0.58,1]	chr17	687891	179	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.6951	5.028315	5.36153	0.0521567	0.00273899	0.148503	0.028553
chr3	179710939	179711015	1637578	0	+	0.592105	(0.58,1]	chr3	171401	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000288698:USP13	ENSG00000288698.1:ENSG00000058056.10	ENST00000680408.1:ENST00000680587.1:ENST00000263966.8:ENST00000681051.1:ENST00000482333.5:ENST00000680008.1:ENST00000496897.5:ENST00000679783.1:ENST00000679694.1:ENST00000680276.1:ENST00000680436.1:ENST00000680651.1:ENST00000680055.1:ENST00000681109.1:ENST00000680502.1:ENST00000681356.1:ENST00000679602.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	4.6951	5.028315	5.36153	0.0521567	0.00273899	0.148503	0.028553
chr4	143336931	143337017	2136940	0	+	0.744186	(0.58,1]	chr4	217042	3	UTR5	UTR5:EXON_MRNA	GAB1	ENSG00000109458.9	ENST00000262995.8:ENST00000262994.9	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.6951	5.028315	5.36153	0.0521567	0.00273899	0.148503	0.028553
chr8	8328661	8328761	3933891	0	-	0.48	(0.45,0.485]	chr8	376126	2	SS3_PROX	SS3_PROX:INTRON	PRAG1	ENSG00000275342.5	ENST00000615670.5:ENST00000622241.1	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.67139	5.02821	5.38503	0.0308908	0.0223378	0.119556	0.108193
chr12	108645606	108645706	5492569	0	-	0.44	(0.419,0.45]	chr12	540315	6	UTR3	UTR3:EXON_MRNA	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6	protein_coding	protein_coding	protein_coding	protein_coding	1	121	2	3.4957	5.02794	6.56018	0.0102234	0.00648928	0.0678072	0.0532359
chr6	8799509	8799609	2844222	0	+	0.51	(0.485,0.523]	chr6	278388	2	SS5_PROX	SS5_PROX:INTRON	HULC	ENSG00000285219.3	ENST00000643788.1:ENST00000643058.1:ENST00000643136.1:ENST00000646073.1:ENST00000646431.1:ENST00000644892.1:ENST00000644654.1:ENST00000644837.1:ENST00000646403.1:ENST00000645474.1:ENST00000645365.1:ENST00000642798.1:ENST00000642357.1:ENST00000645976.1:ENST00000643985.1:ENST00000642760.1:ENST00000646996.1:ENST00000645379.1:ENST00000643431.1:ENST00000647039.1:ENST00000644605.1:ENST00000645747.1:ENST00000646231.1:ENST00000643473.1:ENST00000646868.1	lncRNA	lncRNA	lncRNA	lncRNA	0	55	2	4.43249	5.0277449999999995	5.623	0.0322299	0.0192139	0.12988	0.095424900000000007
chr2	108587617	108587716	871484	0	+	0.393939	(0.39,0.419]	chr2	98292	69	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1:ENST00000695519.1	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.55943	5.027645	5.49586	0.104562	0.00479873	0.19835	0.0416285
chr3	62074163	62074263	1491745	0	+	0.41	(0.39,0.419]	chr3	160104	703	INTRON	INTRON	PTPRG	ENSG00000144724.20	ENST00000474889.6:ENST00000295874.14	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.55943	5.027645	5.49586	0.104562	0.00479873	0.19835	0.0416285
chr19	1173323	1173423	7305786	0	-	0.65	(0.58,1]	chr19	753059	2	SS5_PROX	SS5_PROX:INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	1	100	2	4.01623	5.02758	6.03893	0.00503456	0.00161478	0.0464858	0.0199131
chr1	29237715	29237815	78385	0	+	0.86	(0.58,1]	chr1	8914	6	INTRON	INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2	protein_coding	protein_coding	protein_coding	protein_coding	1	101	2	4.28568	5.0275099999999995	5.76934	0.00849371	7.30957e-4	0.0617717	0.0113963
chr1	228156150	228156249	358148	0	+	0.454545	(0.45,0.485]	chr1	40434	58	INTRON	INTRON	GJC2	ENSG00000198835.4	ENST00000366714.3	protein_coding	protein_coding	protein_coding	protein_coding	1	134	2	3.64005	5.02748	6.41491	0.0186612	0.00034885200000000003	0.0934138	0.00674746
chr11	57303198	57303292	5038248	0	-	0.638298	(0.58,1]	chr11	488041	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1:ENST00000427750.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.89007	5.0273	5.16453	0.0249802	0.00872525	0.10758	0.0612699
chr11	72773348	72773448	5070675	0	-	0.64	(0.58,1]	chr11	493498	136	INTRON	INTRON	ARAP1:STARD10	ENSG00000186635.15:ENSG00000214530.10	ENST00000359373.9:ENST00000334805.11:ENST00000543304.5:ENST00000538536.5:ENST00000538437.5:ENST00000545082.5:ENST00000537947.5:ENST00000542989.5:ENST00000546314.5:ENST00000535267.1:ENST00000539138.1:ENST00000535054.1:ENST00000536290.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	48	2	4.89007	5.0273	5.16453	0.0249802	0.00872525	0.10758	0.0612699
chr19	8397483	8397581	7200632	0	+	0.642857	(0.58,1]	chr19	734267	67	INTRON	INTRON	RAB11B	ENSG00000185236.12	ENST00000600719.5:ENST00000328024.11:ENST00000598706.1:ENST00000601897.1:ENST00000594216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	4.89007	5.0273	5.16453	0.0249802	0.00872525	0.10758	0.0612699
chr2	10162151	10162250	717922	0	+	0.606061	(0.58,1]	chr2	84002	60	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	48	2	4.89007	5.0273	5.16453	0.0249802	0.00872525	0.10758	0.0612699
chr7	226437	226537	3305919	0	+	0.72	(0.58,1]	chr7	320161	171	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.89007	5.0273	5.16453	0.0249802	0.00872525	0.10758	0.0612699
chr5	73703570	73703670	2452466	0	+	0.38	(0.36,0.39]	chr5	244920	183	INTRON	INTRON	ARHGEF28	ENSG00000214944.10	ENST00000545377.5:ENST00000296794.10:ENST00000513042.7:ENST00000509848.5:ENST00000426542.6:ENST00000437974.5	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.72331	5.027184999999999	5.33106	0.0383628	0.0236929	0.131324	0.111208
chr17	17717330	17717430	6689208	0	+	0.62	(0.58,1]	chr17	671338	324	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.54927	5.02712	5.50497	0.0643046	0.00187297	0.161669	0.0219434
chr6	41701470	41701569	3132407	0	-	0.616162	(0.58,1]	chr6	305477	99	INTRON	INTRON	TFEB	ENSG00000112561.19	ENST00000358871.6:ENST00000373033.6:ENST00000230323.8:ENST00000677531.1:ENST00000403298.9:ENST00000420312.6:ENST00000424495.2:ENST00000678831.1:ENST00000419396.6:ENST00000416140.6:ENST00000419574.6:ENST00000445214.2:ENST00000678871.1:ENST00000394283.5:ENST00000679237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	4.54927	5.02712	5.50497	0.0643046	0.00187297	0.161669	0.0219434
chr13	33246273	33246373	5685060	0	-	0.45	(0.419,0.45]	chr13	558196	404	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	117	2	4.20193	5.026565	5.8512	0.0201381	0.00189707	0.0973365	0.0222086
chrX	133937151	133937251	8115539	0	-	0.48	(0.45,0.485]	chrX	845529	1022	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	715	2	4.36158	5.026355000000001	5.69113	3.87308e-4	4.20001e-5	0.0113274	0.00145378
chr10	18555668	18555768	4642285	0	-	0.41	(0.39,0.419]	chr10	443321	33	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.72276	5.026235	5.32971	0.0390381	0.0238104	0.131575	0.111436
chr15	83231159	83231259	6167604	0	+	0.26	[0,0.29]	chr15	607034	452	INTRON	INTRON	ENSG00000259986	ENSG00000259986.1	ENST00000565495.1	lncRNA	lncRNA	lncRNA	lncRNA	0	55	2	4.35679	5.026009999999999	5.69523	0.0332741	0.010611	0.133139	0.0697759
chr10	119393899	119393998	4595188	0	+	0.535354	(0.523,0.58]	chr10	439179	126	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.83424	5.025755	5.21727	0.0361597	0.0144272	0.127853	0.0833845
chr15	52136256	52136330	6261567	0	-	0.554054	(0.523,0.58]	chr15	617064	1	INTRON	INTRON	GNB5	ENSG00000069966.19	ENST00000261837.12:ENST00000396335.8:ENST00000358784.11:ENST00000559348.5:ENST00000558519.5:ENST00000561313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	50	2	4.83424	5.025755	5.21727	0.0361597	0.0144272	0.127853	0.0833845
chr2	24311448	24311533	1104257	0	-	0.529412	(0.523,0.58]	chr2	120586	4	INTRON	INTRON	ITSN2	ENSG00000198399.16	ENST00000355123.9:ENST00000361999.7:ENST00000406921.7:ENST00000412011.5:ENST00000443927.5	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.83424	5.025755	5.21727	0.0361597	0.0144272	0.127853	0.0833845
chr13	21517754	21517853	5667195	0	-	0.545455	(0.523,0.58]	chr13	556632	18	INTRON	INTRON	MICU2	ENSG00000165487.14	ENST00000382374.9:ENST00000469058.1:ENST00000476895.5:ENST00000468222.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.905	5.025510000000001	5.14602	0.0563605	0.00734367	0.154188	0.0550721
chr21	41828633	41828733	7673608	0	-	0.57	(0.523,0.58]	chr21	801977	3	SS3_PROX	SS3_PROX:INTRON	PRDM15	ENSG00000141956.14	ENST00000422911.6:ENST00000441787.5:ENST00000449395.6:ENST00000398548.6:ENST00000447016.6:ENST00000269844.5:ENST00000491486.5:ENST00000489661.5:ENST00000496124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.905	5.025510000000001	5.14602	0.0563605	0.00734367	0.154188	0.0550721
chr10	79162732	79162832	4532984	0	+	0.6	(0.58,1]	chr10	432438	2	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.74346	5.0254650000000005	5.30747	0.0196049	0.0121457	0.0955413	0.0754623
chr15	40107393	40107484	6235232	0	-	0.593407	(0.58,1]	chr15	613047	6	INTRON	INTRON	BMF	ENSG00000104081.14	ENST00000354670.9:ENST00000558774.5:ENST00000559701.5:ENST00000557870.1:ENST00000560430.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.74346	5.0254650000000005	5.30747	0.0196049	0.0121457	0.0955413	0.0754623
chr16	85588031	85588131	6518953	0	+	0.6	(0.58,1]	chr16	646396	313	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.74346	5.0254650000000005	5.30747	0.0196049	0.0121457	0.0955413	0.0754623
chr3	44975832	44975932	1756969	0	-	0.66	(0.58,1]	chr3	181053	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZDHHC3	ENSG00000163812.15	ENST00000339420.7:ENST00000424952.7:ENST00000296127.7:ENST00000342790.8:ENST00000455235.5	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.74346	5.0254650000000005	5.30747	0.0196049	0.0121457	0.0955413	0.0754623
chr15	40106645	40106742	6235224	0	-	0.556701	(0.523,0.58]	chr15	613046	1	SS3_PROX	SS3_PROX:INTRON	BMF	ENSG00000104081.14	ENST00000354670.9:ENST00000558774.5:ENST00000559701.5:ENST00000557870.1:ENST00000560430.1	protein_coding	protein_coding	protein_coding	protein_coding	1	136	2	3.95411	5.0254449999999995	6.09678	0.010063	6.74499e-4	0.0677615	0.0108081
chr17	49016431	49016531	6750213	0	+	0.51	(0.485,0.523]	chr17	680309	20	INTRON	INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2:ENST00000515586.5:ENST00000499130.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	108	2	4.05608	5.02541	5.99474	0.0103305	0.00203265	0.0684871	0.0232814
chr19	309904	310000	7302972	0	-	0.552083	(0.523,0.58]	chr19	752391	6	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.96197	5.025395	5.08882	0.0521137	0.00834774	0.148503	0.0598672
chr1	40374808	40374908	100239	0	+	0.53	(0.523,0.58]	chr1	11927	1	SS5_PROX	SS5_PROX:INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5	protein_coding	protein_coding	protein_coding	protein_coding	1	115	2	3.47888	5.025295	6.57171	0.00856566	0.00369199	0.0612	0.0389784
chr9	123525592	123525692	4397832	0	-	0.46	(0.45,0.485]	chr9	419652	396	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	4.50852	5.02519	5.54186	0.0302873	0.0243502	0.126768	0.106588
chr2	164565214	164565314	1297068	0	-	0.41	(0.39,0.419]	chr2	139154	170	INTRON	INTRON	GRB14	ENSG00000115290.11	ENST00000263915.8:ENST00000488342.5:ENST00000696453.1:ENST00000446413.6:ENST00000469573.1:ENST00000424693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	55	2	4.48504	5.02511	5.56518	0.0364893	0.027797	0.139793	0.112962
chr14	94307879	94307976	6046251	0	-	0.329897	(0.29,0.33]	chr14	593049	13	INTRON	INTRON	SERPINA6	ENSG00000170099.6	ENST00000341584.4:ENST00000555056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	4.82544	5.02496	5.22448	0.0331252	0.0156279	0.123313	0.0877396
chr5	180577071	180577170	2606445	0	+	0.353535	(0.33,0.36]	chr5	259163	30	UTR3	UTR3:EXON_MRNA	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4	protein_coding	protein_coding	protein_coding	protein_coding	2	308	2	5.02422	5.024765	5.02531	0.00151815	1.67953e-4	0.0240441	0.00400497
chr11	68331972	68332072	4882277	0	+	0.59	(0.58,1]	chr11	470542	188	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	111	2	3.39676	5.024735	6.65271	0.0085026	0.00141059	0.0608246	0.0229261
chr2	53982874	53982974	795029	0	+	0.34	(0.33,0.36]	chr2	90708	76	INTRON	INTRON	ACYP2	ENSG00000170634.13	ENST00000458030.3:ENST00000422521.2:ENST00000607452.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	112	2	4.09291	5.02457	5.95623	0.0129408	0.00218298	0.0775979	0.0244273
chr17	17742550	17742650	6689461	0	+	0.35	(0.33,0.36]	chr17	671344	180	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.77355	5.02456	5.27557	0.0735809	0.00707628	0.17026	0.0540197
chr10	75705060	75705160	4523214	0	+	0.33	(0.29,0.33]	chr10	432271	571	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.96914	5.024555	5.07997	0.0481918	0.00913217	0.144601	0.0632458
chr14	75645121	75645219	5887211	0	+	0.479592	(0.45,0.485]	chr14	574978	29	INTRON	INTRON	FLVCR2:TTLL5	ENSG00000119686.10:ENSG00000119685.20	ENST00000238667.9:ENST00000554496.1:ENST00000555385.1:ENST00000539311.5:ENST00000556241.5:ENST00000553587.5:ENST00000556856.1:ENST00000555027.1:ENST00000554132.1:ENST00000556265.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.5725	5.02449	5.47648	0.0926859	0.0039628	0.188571	0.0368027
chr2	44429105	44429205	781146	0	+	0.46	(0.45,0.485]	chr2	89654	281	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000403853.7:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.5725	5.02449	5.47648	0.0926859	0.0039628	0.188571	0.0368027
chr2	25432286	25432385	1106558	0	-	0.464646	(0.45,0.485]	chr2	120838	43	INTRON	INTRON	DTNB	ENSG00000138101.20	ENST00000495466.6:ENST00000496972.6:ENST00000404103.7:ENST00000405222.5:ENST00000407038.7:ENST00000407661.7:ENST00000406818.8:ENST00000398951.6:ENST00000288642.12:ENST00000407186.5:ENST00000356599.9:ENST00000479898.5:ENST00000482145.5:ENST00000481841.5:ENST00000485845.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	50	2	4.7111	5.024455	5.33781	0.0781398	0.0054758	0.175203	0.0454065
chr2	119765979	119766079	883651	0	+	0.44	(0.419,0.45]	chr2	100098	52	INTRON	INTRON	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000460162.1:ENST00000420482.5:ENST00000460289.5:ENST00000488279.6:ENST00000485247.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	115	2	3.97869	5.024355	6.07002	0.0143746	0.00330911	0.0821732	0.0324356
chr16	18364934	18365034	6557602	0	-	0.5	(0.485,0.523]	chr16	653422	3	SS3_PROX	SS3_PROX:INTRON	NPIPA9	ENSG00000233024.7	ENST00000545114.5:ENST00000427999.6:ENST00000531453.6:ENST00000528301.1:ENST00000526166.5:ENST00000546267.5:ENST00000533010.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	50	2	4.83072	5.024205	5.21769	0.0359739	0.0148956	0.127853	0.0847741
chr2	11623473	11623571	721137	0	+	0.510204	(0.485,0.523]	chr2	84248	21	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000234142.9:ENST00000396123.2	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.83072	5.024205	5.21769	0.0359739	0.0148956	0.127853	0.0847741
chr3	52294871	52294967	1473124	0	+	0.489583	(0.485,0.523]	chr3	158245	19	UTR3	UTR3:EXON_MRNA	GLYCTK	ENSG00000168237.18	ENST00000436784.7	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.83072	5.024205	5.21769	0.0359739	0.0148956	0.127853	0.0847741
chr6	35494999	35495098	3125645	0	-	0.494949	(0.485,0.523]	chr6	304825	79	INTRON	INTRON	TEAD3	ENSG00000007866.22	ENST00000338863.13:ENST00000402886.9:ENST00000639578.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	4.83072	5.024205	5.21769	0.0359739	0.0148956	0.127853	0.0847741
chr3	12965300	12965399	1688782	0	-	0.656566	(0.58,1]	chr3	176520	43	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	4.49116	5.023985	5.55681	0.0207449	0.0126042	0.102713	0.0761905
chr3	11680572	11680672	1685153	0	-	0.49	(0.485,0.523]	chr3	176118	88	INTRON	INTRON	VGLL4	ENSG00000144560.16	ENST00000273038.7:ENST00000426568.5:ENST00000445411.5:ENST00000418000.5:ENST00000417206.6:ENST00000417466.5:ENST00000419541.4:ENST00000623028.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.90542	5.02395	5.14248	0.0561086	0.00761903	0.154188	0.0561937
chr7	74965398	74965498	3394091	0	+	0.51	(0.485,0.523]	chr7	327737	3	SS5_PROX	SS5_PROX:INTRON	CASTOR2	ENSG00000274070.2	ENST00000616305.2	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.90542	5.02395	5.14248	0.0561086	0.00761903	0.154188	0.0561937
chr1	174427044	174427144	280671	0	+	0.36	(0.33,0.36]	chr1	32717	325	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.93777	5.023945	5.11012	0.04702	0.0144674	0.143232	0.0833845
chr3	120079869	120079968	1886979	0	-	0.353535	(0.33,0.36]	chr3	191436	52	INTRON	INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000650344.2:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000677128.1:ENST00000677530.1:ENST00000677034.1:ENST00000679131.1:ENST00000676743.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	50	2	4.93777	5.023945	5.11012	0.04702	0.0144674	0.143232	0.0833845
chr18	36254374	36254473	7049266	0	+	0.333333	(0.33,0.36]	chr18	719791	27	INTRON	INTRON	MOCOS	ENSG00000075643.6	ENST00000261326.6	protein_coding	protein_coding	protein_coding	protein_coding	1	114	2	4.26869	5.02372	5.77875	0.0172683	0.00137896	0.0897247	0.0178284
chr10	31450844	31450944	4473071	0	+	0.48	(0.45,0.485]	chr10	427907	608	INTRON	INTRON	ZEB1	ENSG00000148516.23	ENST00000488625.6:ENST00000560196.5:ENST00000542879.5:ENST00000561304.5:ENST00000320985.14:ENST00000560721.6:ENST00000559858.5:ENST00000558440.5:ENST00000437844.6:ENST00000424869.6:ENST00000542815.7:ENST00000558863.5:ENST00000561212.5:ENST00000558655.5:ENST00000561061.5:ENST00000559496.5:ENST00000446923.7:ENST00000557827.5:ENST00000606671.5:ENST00000606161.1:ENST00000493835.5:ENST00000560909.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	50	2	4.88567	5.02358	5.16149	0.0427653	0.0146126	0.13762	0.0837727
chr16	81623697	81623797	6509534	0	+	0.48	(0.45,0.485]	chr16	645926	16	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.88567	5.02358	5.16149	0.0427653	0.0146126	0.13762	0.0837727
chr9	96330243	96330342	4343434	0	-	0.515152	(0.485,0.523]	chr9	414989	57	INTRON	INTRON	SLC35D2	ENSG00000130958.13	ENST00000650065.1:ENST00000253270.13:ENST00000375259.9:ENST00000490599.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	145	2	3.4747	5.02342	6.57214	0.0036605	0.00295385	0.0389784	0.0300958
chr13	113614936	113615036	5659150	0	+	0.53	(0.523,0.58]	chr13	555781	35	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	49	2	4.84569	5.023365	5.20104	0.0610722	0.00648051	0.158506	0.0503748
chr16	87855630	87855730	6657030	0	-	0.57	(0.523,0.58]	chr16	666007	34	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.84569	5.023365	5.20104	0.0610722	0.00648051	0.158506	0.0503748
chr2	239370202	239370302	1392414	0	-	0.56	(0.523,0.58]	chr2	148759	169	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	4.84569	5.023365	5.20104	0.0610722	0.00648051	0.158506	0.0503748
chr20	35010688	35010788	7550434	0	-	0.56	(0.523,0.58]	chr20	788281	4	SS3_PROX	SS3_PROX:INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.84569	5.023365	5.20104	0.0610722	0.00648051	0.158506	0.0503748
chr1	228151596	228151695	358102	0	+	0.646465	(0.58,1]	chr1	40434	12	INTRON	INTRON	GJC2	ENSG00000198835.4	ENST00000366714.3	protein_coding	protein_coding	protein_coding	protein_coding	1	104	2	3.64686	5.023255000000001	6.39965	0.00447535	0.00241374	0.0398484	0.0309229
chr13	40614950	40615050	5692815	0	-	0.47	(0.45,0.485]	chr13	558751	518	INTRON	INTRON	FOXO1	ENSG00000150907.10	ENST00000379561.6:ENST00000655267.1:ENST00000660760.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.74641	5.023070000000001	5.29973	0.035042	0.0193126	0.12704	0.0994526
chr20	49660200	49660300	7575638	0	-	0.47	(0.45,0.485]	chr20	791530	31	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.74641	5.023070000000001	5.29973	0.035042	0.0193126	0.12704	0.0994526
chr5	34952043	34952143	2399920	0	+	0.46	(0.45,0.485]	chr5	239669	17	EXON_LNCRNA	EXON_LNCRNA:INTRON	DNAJC21	ENSG00000168724.17	ENST00000648817.1:ENST00000382021.2:ENST00000642851.1:ENST00000642675.1:ENST00000642285.1:ENST00000646714.1:ENST00000512136.1:ENST00000506762.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	4.74641	5.023070000000001	5.29973	0.035042	0.0193126	0.12704	0.0994526
chr2	224549808	224549908	1378824	0	-	0.4	(0.39,0.419]	chr2	147256	138	INTRON	INTRON	CUL3	ENSG00000036257.14	ENST00000344951.8:ENST00000264414.9:ENST00000409096.5:ENST00000409777.5:ENST00000432260.2:ENST00000436172.1:ENST00000546102.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	50	2	4.9406	5.023054999999999	5.10551	0.0658437	0.0112089	0.162385	0.071709
chr7	6699937	6700033	3542712	0	-	0.395833	(0.39,0.419]	chr7	342314	18	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000404360.5:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.9406	5.023054999999999	5.10551	0.0658437	0.0112089	0.162385	0.071709
chr2	111474962	111475060	1253392	0	-	0.653061	(0.58,1]	chr2	134923	25	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1:ENST00000673878.1:ENST00000439494.1	lncRNA	lncRNA	lncRNA	lncRNA	1	101	2	4.31005	5.023035	5.73602	0.00904546	6.7911e-4	0.0637469	0.0108488
chr17	344117	344217	6821730	0	-	0.39	(0.36,0.39]	chr17	689629	28	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000577079.5:ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.885	5.0230250000000005	5.16105	0.0697729	0.00993384	0.167185	0.0666221
chr1	226945079	226945179	355643	0	+	0.55	(0.523,0.58]	chr1	40145	41	INTRON	INTRON	COQ8A	ENSG00000163050.18	ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000489044.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	5.01677	5.023020000000001	5.02927	0.0482765	0.0095202	0.144601	0.0650078
chr1	235068542	235068640	688910	0	-	0.55102	(0.523,0.58]	chr1	81115	15	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	LINC01348	ENSG00000280587.2	ENST00000690081.1:ENST00000690660.1:ENST00000687678.1:ENST00000628622.1:ENST00000688791.1:ENST00000687433.1:ENST00000687230.1	lncRNA	lncRNA	lncRNA	lncRNA	0	49	2	5.01677	5.023020000000001	5.02927	0.0482765	0.0095202	0.144601	0.0650078
chr16	28463381	28463481	6574284	0	-	0.53	(0.523,0.58]	chr16	656431	3	SS3_PROX	SS3_PROX:INTRON	NPIPB7	ENSG00000233232.7	ENST00000452313.5:ENST00000652214.1:ENST00000435324.3	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	5.01677	5.023020000000001	5.02927	0.0482765	0.0095202	0.144601	0.0650078
chr7	47472410	47472510	3588532	0	-	0.53	(0.523,0.58]	chr7	346123	193	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	5.01677	5.023020000000001	5.02927	0.0482765	0.0095202	0.144601	0.0650078
chr7	139663389	139663489	3722779	0	-	0.55	(0.523,0.58]	chr7	357498	313	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	5.01677	5.023020000000001	5.02927	0.0482765	0.0095202	0.144601	0.0650078
chr8	38381389	38381489	3967576	0	-	0.55	(0.523,0.58]	chr8	379198	4	SS5_PROX	SS5_PROX:INTRON	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5:ENST00000316985.7:ENST00000529223.1:ENST00000534155.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	5.01677	5.023020000000001	5.02927	0.0482765	0.0095202	0.144601	0.0650078
chrX	9530882	9530982	7843104	0	+	0.55	(0.523,0.58]	chrX	822404	287	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	5.01677	5.023020000000001	5.02927	0.0482765	0.0095202	0.144601	0.0650078
chr17	7112534	7112632	6847759	0	-	0.642857	(0.58,1]	chr17	693423	33	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	248	2	4.60513	5.02283	5.44053	0.0017275	1.68875e-5	0.0257605	7.44477e-4
chr12	65842033	65842133	5255615	0	+	0.39	(0.36,0.39]	chr12	512292	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	HMGA2	ENSG00000149948.14	ENST00000354636.7:ENST00000536545.5:ENST00000425208.6:ENST00000537429.5:ENST00000393578.7:ENST00000537275.5:ENST00000403681.7:ENST00000541363.5:ENST00000393577.7:ENST00000539662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	4.99672	5.022825	5.04893	0.0604395	0.0125348	0.158506	0.0765738
chr8	106022290	106022390	4037936	0	-	0.37	(0.36,0.39]	chr8	385453	942	INTRON	INTRON	ZFPM2-AS1	ENSG00000251003.9	ENST00000520433.5:ENST00000524045.6:ENST00000520594.5:ENST00000509144.2:ENST00000520078.5:ENST00000521622.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	50	2	4.99672	5.022825	5.04893	0.0604395	0.0125348	0.158506	0.0765738
chr16	29274112	29274212	6433578	0	+	0.6	(0.58,1]	chr16	636745	220	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	1	101	2	3.82654	5.02253	6.21852	0.00350812	0.00275362	0.0379357	0.0285628
chr7	92825495	92825595	3638858	0	-	0.32	(0.29,0.33]	chr7	350324	503	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.85285	5.022505000000001	5.19216	0.0567079	0.00712176	0.154343	0.0541241
chr12	39389152	39389251	5411569	0	-	0.353535	(0.33,0.36]	chr12	530029	185	INTRON	INTRON	KIF21A	ENSG00000139116.19	ENST00000361418.10:ENST00000361961.7:ENST00000636569.1:ENST00000544797.6:ENST00000541463.6	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.49572	5.022405	5.54909	0.103264	0.00379428	0.197541	0.0355124
chr2	11454750	11454841	1089635	0	-	0.351648	(0.33,0.36]	chr2	118796	6	INTRON	INTRON	E2F6	ENSG00000169016.17	ENST00000307236.8:ENST00000542100.5:ENST00000546212.2:ENST00000381525.8:ENST00000444832.5:ENST00000428221.5:ENST00000455198.5:ENST00000437573.5:ENST00000421117.1:ENST00000468775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	4.49572	5.022405	5.54909	0.103264	0.00379428	0.197541	0.0355124
chr2	134159067	134159167	895821	0	+	0.26	[0,0.29]	chr2	101196	315	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.99924	5.02221	5.04518	0.0347661	0.00813784	0.126529	0.0588114
chr1	149514700	149514789	238717	0	+	0.449438	(0.419,0.45]	chr1	26684	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF19	ENSG00000271383.8	ENST00000651566.2:ENST00000611931.4:ENST00000612881.4:ENST00000369227.7:ENST00000426482.3	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.63955	5.0221599999999995	5.40477	0.0385125	0.0293406	0.131324	0.125102
chr14	94181217	94181317	5901483	0	+	0.41	(0.39,0.419]	chr14	576768	47	INTRON	INTRON	PPP4R4	ENSG00000119698.12	ENST00000556884.5:ENST00000555690.5:ENST00000304338.8:ENST00000328839.3:ENST00000553661.5:ENST00000556470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.88366	5.022069999999999	5.16048	0.0707789	0.00999413	0.168159	0.0667545
chr6	1871927	1872027	3081592	0	-	0.41	(0.39,0.419]	chr6	299482	1290	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	50	2	4.88366	5.022069999999999	5.16048	0.0707789	0.00999413	0.168159	0.0667545
chr11	70534730	70534830	5059620	0	-	0.51	(0.485,0.523]	chr11	492663	314	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	109	2	3.7763	5.021965	6.26763	0.00639185	0.00420211	0.0529032	0.0380601
chr17	7108007	7108095	6847711	0	-	0.636364	(0.58,1]	chr17	693414	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	249	2	4.51752	5.0218799999999995	5.52624	0.00209278	1.25288e-5	0.0287557	6.0222e-4
chr12	132953351	132953451	5542065	0	-	0.41	(0.39,0.419]	chr12	547064	47	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	50	2	4.99538	5.02187	5.04836	0.0613573	0.0126072	0.158506	0.0768036
chr3	126345585	126345684	1907124	0	-	0.656566	(0.58,1]	chr3	193539	13	INTRON	INTRON	KLF15	ENSG00000163884.4	ENST00000296233.4	protein_coding	protein_coding	protein_coding	protein_coding	1	100	2	4.20999	5.02187	5.83375	0.00751249	9.16802e-4	0.0576451	0.0133866
chr16	1607019	1607119	6533947	0	-	0.51	(0.485,0.523]	chr16	649183	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	IFT140	ENSG00000187535.14	ENST00000426508.7:ENST00000397417.6:ENST00000439987.6:ENST00000566052.1:ENST00000569646.5:ENST00000569812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.84611	5.021800000000001	5.19749	0.0608067	0.00672953	0.158506	0.0519464
chr11	72724040	72724139	5070167	0	-	0.434343	(0.419,0.45]	chr11	493450	18	INTRON	INTRON	ARAP1	ENSG00000186635.15	ENST00000359373.9:ENST00000393609.8	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.69033	5.021750000000001	5.35317	0.0958674	0.00714797	0.189038	0.0541241
chr16	85591927	85592027	6518992	0	+	0.42	(0.419,0.45]	chr16	646396	352	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.69033	5.021750000000001	5.35317	0.0958674	0.00714797	0.189038	0.0541241
chr17	61088897	61088997	6775112	0	+	0.44	(0.419,0.45]	chr17	683270	15	INTRON	INTRON	BCAS3	ENSG00000141376.23	ENST00000407086.8:ENST00000589222.5:ENST00000390652.9:ENST00000588462.5:ENST00000408905.7:ENST00000588874.5:ENST00000585744.5:ENST00000585979.5:ENST00000587002.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.69033	5.021750000000001	5.35317	0.0958674	0.00714797	0.189038	0.0541241
chr4	76957017	76957117	2061310	0	+	0.45	(0.419,0.45]	chr4	210881	67	INTRON	INTRON	SEPTIN11	ENSG00000138758.12	ENST00000502584.5:ENST00000264893.11:ENST00000510641.5:ENST00000505788.5:ENST00000512575.5:ENST00000510515.5:ENST00000504637.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.69033	5.021750000000001	5.35317	0.0958674	0.00714797	0.189038	0.0541241
chr6	24186423	24186522	3108605	0	-	0.444444	(0.419,0.45]	chr6	301405	74	INTRON	INTRON	DCDC2	ENSG00000146038.12	ENST00000378454.8:ENST00000378450.6	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.19215	5.021675	5.8512	0.0617113	0.0201381	0.18013	0.0973365
chr6	41586603	41586698	2912917	0	+	0.631579	(0.58,1]	chr6	285787	2	SS3_PROX	SS3_PROX:INTRON	FOXP4	ENSG00000137166.17	ENST00000307972.10:ENST00000373063.7:ENST00000409208.5:ENST00000373057.7	protein_coding	protein_coding	protein_coding	protein_coding	2	134	2	3.46351	5.02149	6.57947	0.0022345	0.00165065	0.0250898	0.024843
chr18	49258793	49258893	7160258	0	-	0.5	(0.485,0.523]	chr18	727884	3	SS3_PROX	SS3_PROX:INTRON	DYM	ENSG00000141627.14	ENST00000675505.1:ENST00000269445.10:ENST00000442713.6	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	5.01719	5.02146	5.02573	0.0480495	0.00985879	0.144601	0.0664239
chr4	708861	708961	1993716	0	+	0.51	(0.485,0.523]	chr4	203088	25	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	5.01719	5.02146	5.02573	0.0480495	0.00985879	0.144601	0.0664239
chr7	131079967	131080067	3712557	0	-	0.49	(0.485,0.523]	chr7	356789	30	INTRON	INTRON	LINC-PINT	ENSG00000231721.7	ENST00000647388.1:ENST00000423414.5:ENST00000433079.5:ENST00000642156.1:ENST00000646429.1:ENST00000451786.5:ENST00000646587.1:ENST00000645248.1:ENST00000642602.1:ENST00000644804.1:ENST00000647288.1:ENST00000643135.1:ENST00000643855.1:ENST00000643874.1:ENST00000644188.1:ENST00000435523.5:ENST00000431189.1:ENST00000642483.1:ENST00000429901.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	49	2	5.01719	5.02146	5.02573	0.0480495	0.00985879	0.144601	0.0664239
chr11	70872907	70873007	5063015	0	-	0.56	(0.523,0.58]	chr11	492726	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000425049.1:ENST00000645599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	4.60868	5.021395	5.43411	0.026041	0.0226775	0.109673	0.108193
chr8	142667116	142667212	4095184	0	-	0.541667	(0.523,0.58]	chr8	389059	2	INTRON	INTRON	JRK	ENSG00000234616.9	ENST00000612905.2:ENST00000615982.4:ENST00000571961.7:ENST00000503272.1:ENST00000591357.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.50593	5.0212900000000005	5.53665	0.094303	0.00291382	0.188571	0.0298557
chr5	38544231	38544331	2641151	0	-	0.45	(0.419,0.45]	chr5	262351	132	INTRON	INTRON	LIFR	ENSG00000113594.10	ENST00000453190.7:ENST00000263409.8:ENST00000503088.1:ENST00000506990.5:ENST00000511561.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.85365	5.020845	5.18804	0.051668	0.0197641	0.148503	0.100774
chr10	18565861	18565961	4642387	0	-	0.46	(0.45,0.485]	chr10	443321	135	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	133	2	3.53745	5.020765	6.50408	0.0221397	2.71658e-4	0.101784	0.00565001
chr8	38771391	38771491	3802269	0	+	0.43	(0.419,0.45]	chr8	365828	136	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	155	2	3.39352	5.02066	6.6478	0.00559992	0.00473168	0.0493906	0.0413976
chr2	36534867	36534966	759446	0	+	0.30303	(0.29,0.33]	chr2	88048	55	INTRON	INTRON	CRIM1	ENSG00000150938.10	ENST00000280527.7	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.59993	5.02064	5.44135	0.0243639	0.0236557	0.113231	0.105002
chr7	158920526	158920622	3523196	0	+	0.552083	(0.523,0.58]	chr7	340299	13	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	61	2	4.13061	5.02029	5.90997	0.0533354	0.012016	0.167062	0.0743424
chr12	23950299	23950368	5388532	0	-	0.434783	(0.419,0.45]	chr12	528204	3	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2:ENST00000536729.2:ENST00000446891.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	123	2	4.48295	5.02017	5.55739	0.0310506	9.16167e-4	0.119758	0.0133855
chr17	242932	243032	6820699	0	-	0.38	(0.36,0.39]	chr17	689558	85	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000570893.5:ENST00000576001.5:ENST00000570954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.6317	5.019995	5.40829	0.0950937	0.00581205	0.189021	0.0472624
chr3	188384313	188384413	1654103	0	+	0.37	(0.36,0.39]	chr3	173766	422	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1:ENST00000494233.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.6317	5.019995	5.40829	0.0950937	0.00581205	0.189021	0.0472624
chr7	105784411	105784511	3670765	0	-	0.38	(0.36,0.39]	chr7	353950	226	INTRON	INTRON	ATXN7L1	ENSG00000146776.15	ENST00000419735.8:ENST00000318724.8:ENST00000478915.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.6317	5.019995	5.40829	0.0950937	0.00581205	0.189021	0.0472624
chr9	4717328	4717426	4269944	0	-	0.367347	(0.36,0.39]	chr9	407900	39	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.6317	5.019995	5.40829	0.0950937	0.00581205	0.189021	0.0472624
chr18	23220240	23220340	7033757	0	+	0.39	(0.36,0.39]	chr18	718325	58	INTRON	INTRON	CABLES1	ENSG00000134508.13	ENST00000579963.5:ENST00000400473.6:ENST00000256925.12:ENST00000585061.1:ENST00000420687.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	50	2	4.82572	5.0198599999999995	5.214	0.0751666	0.00887999	0.172839	0.0618231
chr2	20218507	20218607	1096938	0	-	0.49	(0.485,0.523]	chr2	119640	127	INTRON	INTRON	SDC1	ENSG00000115884.11	ENST00000254351.9:ENST00000381150.5:ENST00000403076.5:ENST00000429035.1:ENST00000482879.5:ENST00000447124.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	52	2	4.60518	5.019855	5.43453	0.0258944	0.0233371	0.110098	0.109555
chr18	32768244	32768344	7143396	0	-	0.4	(0.39,0.419]	chr18	726510	258	INTRON	INTRON	KLHL14	ENSG00000197705.10	ENST00000359358.9:ENST00000358095.4	protein_coding	protein_coding	protein_coding	protein_coding	1	115	2	4.21021	5.0196950000000005	5.82918	0.0186329	0.00174477	0.0932878	0.0210473
chr10	74162529	74162629	4511793	0	+	0.54	(0.523,0.58]	chr10	431901	108	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000478611.2:ENST00000673352.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.68785	5.019545	5.35124	0.0295772	0.0194172	0.116079	0.0994526
chr11	70684609	70684709	5061125	0	-	0.56	(0.523,0.58]	chr11	492688	146	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.68785	5.019545	5.35124	0.0295772	0.0194172	0.116079	0.0994526
chr17	17513939	17514037	6864809	0	-	0.561224	(0.523,0.58]	chr17	695801	9	INTRON	INTRON	PEMT	ENSG00000133027.18	ENST00000255389.10:ENST00000435340.6:ENST00000395783.5:ENST00000395782.5:ENST00000490392.5:ENST00000484838.6:ENST00000395781.6:ENST00000580147.5:ENST00000421096.5:ENST00000472446.1:ENST00000461404.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.68785	5.019545	5.35124	0.0295772	0.0194172	0.116079	0.0994526
chr22	41616554	41616654	7817846	0	-	0.4	(0.39,0.419]	chr22	819943	83	INTRON	INTRON	DESI1	ENSG00000100418.8	ENST00000263256.7	protein_coding	protein_coding	protein_coding	protein_coding	1	116	2	3.6226	5.019165	6.41573	0.0073612	0.00718148	0.056408	0.055174
chr20	34073718	34073735	7460410	0	+	0.411765	(0.39,0.419]	chr20	776612	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000246194.8:ENST00000333552.9:ENST00000442805.1:ENST00000493399.1:ENST00000488227.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.63037	5.019045	5.40772	0.0963077	0.00585126	0.189169	0.0474117
chr4	123133477	123133577	2120715	0	+	0.4	(0.39,0.419]	chr4	215760	313	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.63037	5.019045	5.40772	0.0963077	0.00585126	0.189169	0.0474117
chr6	48007833	48007933	3146026	0	-	0.4	(0.39,0.419]	chr6	306778	1055	INTRON	INTRON	PTCHD4	ENSG00000244694.8	ENST00000339488.9:ENST00000398738.3:ENST00000679966.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.63037	5.019045	5.40772	0.0963077	0.00585126	0.189169	0.0474117
chr7	213367	213467	3305788	0	+	0.53	(0.523,0.58]	chr7	320161	40	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.78384	5.018935	5.25403	0.0663135	0.00573579	0.162385	0.0467736
chr2	156042603	156042703	1285254	0	-	0.4	(0.39,0.419]	chr2	138339	176	INTRON	INTRON	LINC01876	ENSG00000226383.7	ENST00000635799.1:ENST00000662073.1:ENST00000659502.1:ENST00000428651.2:ENST00000661513.1:ENST00000657334.1:ENST00000638047.1:ENST00000637554.1:ENST00000636956.1:ENST00000637665.1:ENST00000637476.1:ENST00000637324.1	lncRNA	lncRNA	lncRNA	lncRNA	0	50	2	4.82439	5.018915	5.21344	0.0762206	0.00893514	0.174484	0.0620271
chr13	36900644	36900743	5690621	0	-	0.363636	(0.36,0.39]	chr13	558430	204	INTRON	INTRON	SMAD9	ENSG00000120693.14	ENST00000379826.5:ENST00000350148.10:ENST00000483941.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.79458	5.0188749999999995	5.24317	0.0433841	0.0207145	0.138813	0.102713
chr9	87632746	87632846	4176778	0	+	0.39	(0.36,0.39]	chr9	397147	272	INTRON	INTRON	DAPK1	ENSG00000196730.13	ENST00000358077.9:ENST00000469640.6:ENST00000472284.5:ENST00000469067.5:ENST00000408954.8:ENST00000622514.4:ENST00000496522.5:ENST00000472344.1:ENST00000491893.5:ENST00000489291.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	4.79458	5.0188749999999995	5.24317	0.0433841	0.0207145	0.138813	0.102713
chr1	245798641	245798741	698758	0	-	0.58	(0.523,0.58]	chr1	82352	98	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000490322.1:ENST00000493441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	53	2	4.5249	5.018685	5.51247	0.0266135	0.0230387	0.118113	0.102982
chr6	45296209	45296309	3142894	0	-	0.37	(0.36,0.39]	chr6	306706	447	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5:ENST00000459689.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	114	2	3.74547	5.018375000000001	6.29128	0.0086512	0.00550271	0.0623824	0.0454065
chr1	2155494	2155594	4179	0	+	0.54	(0.523,0.58]	chr1	984	1	SS3_PROX	SS3_PROX:INTRON	PRKCZ	ENSG00000067606.17	ENST00000378567.8:ENST00000400921.6:ENST00000461106.6:ENST00000486681.5:ENST00000479263.5:ENST00000503672.1:ENST00000478770.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.96714	5.018355	5.06957	0.0448011	0.0108948	0.140478	0.0706366
chr10	132552859	132552959	4616989	0	+	0.54	(0.523,0.58]	chr10	441139	143	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.96714	5.018355	5.06957	0.0448011	0.0108948	0.140478	0.0706366
chr16	16038492	16038591	6406894	0	+	0.535354	(0.523,0.58]	chr16	633041	15	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.96714	5.018355	5.06957	0.0448011	0.0108948	0.140478	0.0706366
chr3	13023495	13023595	1689371	0	-	0.58	(0.523,0.58]	chr3	176542	10	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.96714	5.018355	5.06957	0.0448011	0.0108948	0.140478	0.0706366
chr3	13026693	13026793	1689403	0	-	0.58	(0.523,0.58]	chr3	176542	42	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.96714	5.018355	5.06957	0.0448011	0.0108948	0.140478	0.0706366
chr2	108552549	108552649	871131	0	+	0.44	(0.419,0.45]	chr2	98283	176	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.7145	5.018225	5.32195	0.0431627	0.0256236	0.138403	0.115966
chr14	102795536	102795635	5920448	0	+	0.323232	(0.29,0.33]	chr14	579040	175	INTRON	INTRON	TRAF3	ENSG00000131323.16	ENST00000392745.8:ENST00000560371.5:ENST00000347662.8:ENST00000539721.5:ENST00000560463.5	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.79099	5.01807	5.24515	0.061706	0.00631714	0.158854	0.0501889
chr1	156090370	156090470	250782	0	+	0.51	(0.485,0.523]	chr1	29431	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	LMNA	ENSG00000160789.24	ENST00000502751.5:ENST00000368301.6:ENST00000470835.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.68434	5.0180050000000005	5.35167	0.0294163	0.0200045	0.116079	0.100864
chr10	95502975	95503075	4734697	0	-	0.45	(0.419,0.45]	chr10	452048	99	INTRON	INTRON	SORBS1	ENSG00000095637.23	ENST00000371227.8:ENST00000306402.10:ENST00000371249.6:ENST00000371247.7:ENST00000371246.6:ENST00000607232.5:ENST00000474353.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	151	2	2.81936	5.01795	7.21654	0.0405181	0.00208302	0.145945	0.0287557
chr1	206241933	206242033	324043	0	+	0.41	(0.39,0.419]	chr1	36546	267	INTRON	INTRON	SRGAP2	ENSG00000266028.8	ENST00000573034.8:ENST00000419187.6:ENST00000605610.5:ENST00000624873.3:ENST00000605242.5:ENST00000572793.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.79402	5.01792	5.24182	0.0441194	0.0208208	0.140174	0.102713
chr6	144688635	144688734	3023956	0	+	0.414141	(0.39,0.419]	chr6	295451	97	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000367526.8	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.79402	5.01792	5.24182	0.0441194	0.0208208	0.140174	0.102713
chr1	15065797	15065895	45073	0	+	0.734694	(0.58,1]	chr1	4427	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	KAZN	ENSG00000189337.17	ENST00000636203.1:ENST00000376030.7:ENST00000491547.1:ENST00000361144.9:ENST00000400798.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	101	2	3.79235	5.0174	6.24245	0.00334087	0.00302484	0.0368376	0.0305643
chr11	3839367	3839467	4975289	0	-	0.5	(0.485,0.523]	chr11	481754	16	INTRON	INTRON	RHOG	ENSG00000177105.10	ENST00000351018.5:ENST00000396978.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.78426	5.01737	5.25048	0.0660335	0.0059614	0.162385	0.0479866
chr12	132955343	132955443	5542085	0	-	0.51	(0.485,0.523]	chr12	547064	67	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	49	2	4.78426	5.01737	5.25048	0.0660335	0.0059614	0.162385	0.0479866
chr17	4341861	4341960	6842206	0	-	0.50505	(0.485,0.523]	chr17	692473	62	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1:ENST00000574059.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.78426	5.01737	5.25048	0.0660335	0.0059614	0.162385	0.0479866
chr17	80913952	80914052	6812622	0	+	0.52	(0.485,0.523]	chr17	687941	42	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.78426	5.01737	5.25048	0.0660335	0.0059614	0.162385	0.0479866
chr8	8350608	8350708	3934112	0	-	0.5	(0.485,0.523]	chr8	376133	106	INTRON	INTRON	PRAG1	ENSG00000275342.5	ENST00000615670.5:ENST00000622241.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.78426	5.01737	5.25048	0.0660335	0.0059614	0.162385	0.0479866
chr4	121681515	121681592	2318966	0	-	0.38961	(0.36,0.39]	chr4	232993	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ANXA5	ENSG00000164111.15	ENST00000296511.10:ENST00000501272.6:ENST00000506395.5:ENST00000515017.5:ENST00000511552.5:ENST00000509016.5:ENST00000513428.5:ENST00000513523.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	113	2	4.03367	5.017329999999999	6.00099	0.0139273	0.00272235	0.0805916	0.028553
chr1	6030231	6030330	6738	0	+	0.606061	(0.58,1]	chr1	1420	24	INTRON	INTRON	KCNAB2	ENSG00000069424.16	ENST00000655548.1:ENST00000378111.6:ENST00000378097.6:ENST00000666163.1:ENST00000671676.1:ENST00000658883.1:ENST00000658691.1:ENST00000435937.6:ENST00000445501.6:ENST00000478098.5:ENST00000653262.1:ENST00000668706.1:ENST00000389632.9:ENST00000654144.1:ENST00000341524.6:ENST00000462676.3:ENST00000428161.6:ENST00000352527.6:ENST00000663169.1:ENST00000653635.1:ENST00000661248.1:ENST00000656198.1:ENST00000602612.5:ENST00000481789.2:ENST00000656746.1:ENST00000665338.1:ENST00000666299.1:ENST00000652845.1:ENST00000655703.1:ENST00000669250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.88945	5.01721	5.14497	0.0388928	0.00474658	0.131324	0.0413976
chr11	70817364	70817464	5062457	0	-	0.59	(0.58,1]	chr11	492713	98	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.88945	5.01721	5.14497	0.0388928	0.00474658	0.131324	0.0413976
chr19	7906320	7906413	7199666	0	+	0.623656	(0.58,1]	chr19	734083	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MAP2K7	ENSG00000076984.18	ENST00000397981.7:ENST00000397979.4:ENST00000468058.1:ENST00000397983.7:ENST00000475022.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	4.88945	5.01721	5.14497	0.0388928	0.00474658	0.131324	0.0413976
chr6	52570702	52570802	3148385	0	-	0.63	(0.58,1]	chr6	307028	345	INTRON	INTRON	TRAM2	ENSG00000065308.5	ENST00000182527.4	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.88945	5.01721	5.14497	0.0388928	0.00474658	0.131324	0.0413976
chr1	3892355	3892451	386345	0	-	0.666667	(0.58,1]	chr1	44329	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	C1orf174	ENSG00000198912.12	ENST00000474140.1:ENST00000486765.5:ENST00000361605.4:ENST00000679703.1:ENST00000680054.1:ENST00000680279.1:ENST00000681823.1:ENST00000679946.1:ENST00000680169.1:ENST00000680535.1:ENST00000679929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.94882	5.01708	5.08534	0.0354433	0.00549379	0.127188	0.0454065
chr2	200360454	200360553	986497	0	+	0.585859	(0.58,1]	chr2	108296	88	INTRON	INTRON	SPATS2L	ENSG00000196141.14	ENST00000439084.5:ENST00000409718.5:ENST00000358677.9:ENST00000409988.7:ENST00000409385.5:ENST00000439395.5:ENST00000444012.5:ENST00000451764.6:ENST00000360760.9:ENST00000423749.5:ENST00000457757.5:ENST00000471601.5:ENST00000428692.5:ENST00000453663.5:ENST00000409140.8:ENST00000459656.5:ENST00000471533.5:ENST00000409397.6:ENST00000619961.4:ENST00000409151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	47	2	4.94882	5.01708	5.08534	0.0354433	0.00549379	0.127188	0.0454065
chr2	239276381	239276481	1391472	0	-	0.65	(0.58,1]	chr2	148740	248	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	47	2	4.94882	5.01708	5.08534	0.0354433	0.00549379	0.127188	0.0454065
chr8	143487346	143487446	4096466	0	-	0.62	(0.58,1]	chr8	389272	20	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6:ENST00000528401.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.94882	5.01708	5.08534	0.0354433	0.00549379	0.127188	0.0454065
chr4	145045615	145045715	2332670	0	-	0.36	(0.33,0.36]	chr4	234127	119	INTRON	INTRON	ANAPC10	ENSG00000164162.14	ENST00000641499.1:ENST00000506851.5:ENST00000613466.4:ENST00000507656.6:ENST00000502651.5:ENST00000309439.9:ENST00000451299.6:ENST00000510270.5:ENST00000511466.5:ENST00000514390.5:ENST00000513054.5:ENST00000502562.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.57035	5.01695	5.46355	0.0945416	0.00462971	0.188571	0.0408278
chr1	43596259	43596358	107413	0	+	0.626263	(0.58,1]	chr1	13240	33	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	3	162	2	3.10559	5.016885	6.92818	0.00327864	7.72338e-4	0.0322062	0.0164417
chr20	8187952	8188052	7427139	0	+	0.49	(0.485,0.523]	chr20	773674	372	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	4.96361	5.0168	5.06999	0.0445854	0.0112713	0.140478	0.071709
chr11	70583829	70583929	5060111	0	-	0.68	(0.58,1]	chr11	492663	805	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	102	2	3.72143	5.01668	6.31193	0.00366718	0.00289626	0.0346803	0.03418
chr12	132954746	132954845	5542079	0	-	0.585859	(0.58,1]	chr12	547064	61	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	118	2	3.61485	5.016555	6.41826	0.0133763	1.27804e-4	0.0790342	0.00328053
chr7	158920333	158920429	3523194	0	+	0.572917	(0.523,0.58]	chr7	340299	11	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	56	2	4.34118	5.016375	5.69157	0.0372357	0.0172851	0.139793	0.0897247
chr14	104778940	104779032	6057679	0	-	0.597826	(0.58,1]	chr14	594699	5	INTRON	INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000683722.1:ENST00000555528.5:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000554848.5:ENST00000682269.1:ENST00000555380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	48	2	4.81862	5.016195	5.21377	0.0230012	0.0102696	0.102982	0.0678072
chr9	133855486	133855586	4428953	0	-	0.62	(0.58,1]	chr9	423304	208	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.81862	5.016195	5.21377	0.0230012	0.0102696	0.102982	0.0678072
chr9	134361490	134361590	4261038	0	+	0.59	(0.58,1]	chr9	406311	345	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	4.81862	5.016195	5.21377	0.0230012	0.0102696	0.102982	0.0678072
chr7	97904300	97904400	3646979	0	-	0.41	(0.39,0.419]	chr7	350982	315	INTRON	INTRON	ENSG00000284707	ENSG00000284707.2	ENST00000641784.1:ENST00000641390.1:ENST00000641315.1	lncRNA	lncRNA	lncRNA	lncRNA	0	56	2	4.39622	5.016035	5.63585	0.042449	0.025023	0.149195	0.10758
chr22	28917981	28918080	7705621	0	+	0.464646	(0.45,0.485]	chr22	806321	1	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7:ENST00000402174.5	protein_coding	protein_coding	protein_coding	protein_coding	2	147	2	3.66424	5.015955	6.36767	0.00618594	0.00192579	0.0519442	0.022451
chr10	18568060	18568160	4642409	0	-	0.4	(0.39,0.419]	chr10	443321	157	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	2	189	2	3.20737	5.015805	6.82424	0.0211332	1.6132e-4	0.0996078	0.00387712
chr22	42646140	42646240	7821292	0	-	0.6	(0.58,1]	chr22	820388	1	SS5_PROX	SS5_PROX:INTRON	CYB5R3	ENSG00000100243.22	ENST00000693367.1:ENST00000352397.10:ENST00000361740.9:ENST00000692152.1:ENST00000693363.1:ENST00000689795.1:ENST00000686523.1:ENST00000407332.6:ENST00000687198.1:ENST00000689001.1:ENST00000687183.1:ENST00000691295.1:ENST00000407623.8:ENST00000402438.6:ENST00000690835.1:ENST00000689195.1:ENST00000688244.1:ENST00000690993.1:ENST00000689239.1:ENST00000692344.1:ENST00000438270.2:ENST00000686129.1:ENST00000466276.2:ENST00000693716.1:ENST00000688004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	192	2	4.06347	5.015805	5.96814	0.00213114	5.06433e-4	0.0290277	0.00881473
chr11	71997103	71997202	4889011	0	+	0.515152	(0.485,0.523]	chr11	471679	9	UTR3	UTR3:EXON_MRNA	RNF121	ENSG00000137522.18	ENST00000393713.7:ENST00000361756.8:ENST00000526549.5:ENST00000530137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	111	2	3.61303	5.015395	6.41776	0.00630038	0.00486906	0.0501647	0.0456282
chr19	1496846	1496922	7187814	0	+	0.486842	(0.485,0.523]	chr19	731383	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	REEP6	ENSG00000115255.12	ENST00000233596.8:ENST00000395479.10:ENST00000395484.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	111	2	3.61303	5.015395	6.41776	0.00630038	0.00486906	0.0501647	0.0456282
chr22	50706252	50706352	7755247	0	+	0.59	(0.58,1]	chr22	812776	1	SS5_PROX	SS5_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	55	2	4.29454	5.01528	5.73602	0.0305531	0.00904546	0.126768	0.0637469
chr10	102647317	102647417	4576497	0	+	0.62	(0.58,1]	chr10	437280	11	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	136	2	3.30794	5.01518	6.72242	0.00347194	0.00121317	0.0336158	0.0210863
chr13	97338528	97338627	5631969	0	+	0.40404	(0.39,0.419]	chr13	553188	37	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	188	2	2.97092	5.015135	7.05935	0.0309861	8.30081e-5	0.119758	0.00237656
chr21	41830921	41831020	7673631	0	-	0.676768	(0.58,1]	chr21	801978	22	INTRON	INTRON	PRDM15	ENSG00000141956.14	ENST00000422911.6:ENST00000441787.5:ENST00000449395.6:ENST00000398548.6:ENST00000447016.6:ENST00000269844.5:ENST00000491486.5:ENST00000489661.5:ENST00000496124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.82753	5.01488	5.20223	0.0427798	0.00411607	0.13762	0.0374453
chr7	1939987	1940087	3529624	0	-	0.6	(0.58,1]	chr7	340964	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000450235.5:ENST00000437877.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.82753	5.01488	5.20223	0.0427798	0.00411607	0.13762	0.0374453
chr11	421298	421398	4968155	0	-	0.68	(0.58,1]	chr11	480427	1	SS3_PROX	SS3_PROX:INTRON	ANO9	ENSG00000185101.13	ENST00000526142.5:ENST00000534161.5:ENST00000332826.7:ENST00000532094.5:ENST00000528927.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	5.00585	5.014495	5.02314	0.0323732	0.00638322	0.121593	0.0501889
chr17	28321893	28321993	6705681	0	+	0.47	(0.45,0.485]	chr17	673093	18	INTRON	INTRON	TMEM97	ENSG00000109084.14	ENST00000226230.8:ENST00000583381.5:ENST00000582113.1:ENST00000582384.1:ENST00000336687.6	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.64346	5.014495	5.38553	0.0850039	0.00490471	0.181766	0.0422077
chr17	73310480	73310580	6969816	0	-	0.61	(0.58,1]	chr17	710631	2	SS5_PROX	SS5_PROX:INTRON	CDC42EP4	ENSG00000179604.10	ENST00000335793.4:ENST00000439510.2:ENST00000581014.1:ENST00000580315.1:ENST00000579611.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	5.00585	5.014495	5.02314	0.0323732	0.00638322	0.121593	0.0501889
chr21	41828533	41828633	7673607	0	-	0.63	(0.58,1]	chr21	801977	2	SS3_PROX	SS3_PROX:INTRON	PRDM15	ENSG00000141956.14	ENST00000422911.6:ENST00000441787.5:ENST00000449395.6:ENST00000398548.6:ENST00000447016.6:ENST00000269844.5:ENST00000491486.5:ENST00000489661.5:ENST00000496124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	5.00585	5.014495	5.02314	0.0323732	0.00638322	0.121593	0.0501889
chr21	43957437	43957537	7625358	0	+	0.71	(0.58,1]	chr21	796924	18	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000448845.1:ENST00000422850.5:ENST00000546158.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	5.00585	5.014495	5.02314	0.0323732	0.00638322	0.121593	0.0501889
chr3	188712450	188712548	1657397	0	+	0.479592	(0.45,0.485]	chr3	173818	42	UTR3	UTR3:EXON_MRNA:INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000471917.1:ENST00000415906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.64346	5.014495	5.38553	0.0850039	0.00490471	0.181766	0.0422077
chr7	216260	216360	3305817	0	+	0.69	(0.58,1]	chr7	320161	69	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	5.00585	5.014495	5.02314	0.0323732	0.00638322	0.121593	0.0501889
chr9	137724855	137724955	4265539	0	+	0.6	(0.58,1]	chr9	407352	72	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000460486.3:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	5.00585	5.014495	5.02314	0.0323732	0.00638322	0.121593	0.0501889
chrX	2394171	2394271	7967786	0	-	0.65	(0.58,1]	chrX	834361	13	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	5.00585	5.014495	5.02314	0.0323732	0.00638322	0.121593	0.0501889
chr12	57787462	57787562	5242987	0	+	0.39	(0.36,0.39]	chr12	511081	3	SS5_PROX	SS5_PROX:INTRON	TSFM	ENSG00000123297.20	ENST00000540550.6:ENST00000323833.12:ENST00000651899.1:ENST00000548851.5:ENST00000550559.5:ENST00000652027.2:ENST00000651066.1:ENST00000543727.5:ENST00000434359.5:ENST00000457189.1:ENST00000497617.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	50	2	4.7639	5.01449	5.26508	0.0811309	0.00795848	0.177951	0.0578938
chr5	32158462	32158562	2630499	0	-	0.47	(0.45,0.485]	chr5	261026	142	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	178	2	3.50226	5.0142750000000005	6.52629	0.00466172	0.00162566	0.044542	0.0200325
chr2	168604402	168604502	945663	0	+	0.45	(0.419,0.45]	chr2	103975	210	INTRON	INTRON	CERS6	ENSG00000172292.15	ENST00000392687.4:ENST00000305747.11	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.87598	5.014060000000001	5.15214	0.0768574	0.0109324	0.174882	0.0706366
chr3	57062655	57062755	1789493	0	-	0.44	(0.419,0.45]	chr3	186486	271	INTRON	INTRON	ARHGEF3	ENSG00000163947.12	ENST00000338458.8:ENST00000468727.5:ENST00000477833.5:ENST00000477440.6:ENST00000468466.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	50	2	4.87598	5.014060000000001	5.15214	0.0768574	0.0109324	0.174882	0.0706366
chr9	77793662	77793762	4319468	0	-	0.43	(0.419,0.45]	chr9	412883	646	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.87598	5.014060000000001	5.15214	0.0768574	0.0109324	0.174882	0.0706366
chrX	119690287	119690387	8095656	0	-	0.45	(0.419,0.45]	chrX	843956	143	INTRON	INTRON	SEPTIN6	ENSG00000125354.24	ENST00000360156.11:ENST00000354228.8:ENST00000460411.5:ENST00000489216.5:ENST00000354416.7:ENST00000394610.7:ENST00000343984.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	4.87598	5.014060000000001	5.15214	0.0768574	0.0109324	0.174882	0.0706366
chr6	129595589	129595689	3258761	0	-	0.42	(0.419,0.45]	chr6	315351	111	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3:ENST00000463225.1:ENST00000483367.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.98767	5.0138549999999995	5.04004	0.0669167	0.0137308	0.16272	0.0814223
chr3	197516558	197516658	1991553	0	-	0.62	(0.58,1]	chr3	202753	8	INTRON	INTRON	BDH1	ENSG00000161267.12	ENST00000358186.6:ENST00000392378.6:ENST00000392379.6:ENST00000651856.1:ENST00000441275.5:ENST00000479425.5:ENST00000446746.5:ENST00000477015.5:ENST00000434143.5:ENST00000432819.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	53	2	4.3962	5.01369	5.63118	0.0250928	0.0109983	0.114418	0.0708586
chr2	54219796	54219896	797411	0	+	0.33	(0.29,0.33]	chr2	90756	766	INTRON	INTRON	ACYP2	ENSG00000170634.13	ENST00000607452.6:ENST00000394666.7:ENST00000303536.8:ENST00000494922.6:ENST00000606865.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	4.58769	5.013615	5.43954	0.0806047	0.00401582	0.177452	0.0371286
chr13	51404098	51404198	5715438	0	-	0.6	(0.58,1]	chr13	560749	9	INTRON	INTRON	INTS6	ENSG00000102786.15	ENST00000398119.6:ENST00000311234.9:ENST00000469430.5:ENST00000497989.5:ENST00000486195.6:ENST00000491189.5:ENST00000466784.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	122	2	3.99446	5.013585	6.03271	0.0063152	4.18183e-4	0.0524685	0.00770005
chr7	150687087	150687173	3514865	0	+	0.476744	(0.45,0.485]	chr7	339137	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	GIMAP2	ENSG00000106560.11	ENST00000487388.1:ENST00000223293.10:ENST00000474605.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	50	2	4.81772	5.013389999999999	5.20906	0.0399616	0.0167663	0.133954	0.0917029
chr3	188818935	188819035	1658471	0	+	0.36	(0.33,0.36]	chr3	173846	583	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000459897.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	134	2	3.64781	5.013235	6.37866	0.0187417	4.63001e-4	0.0936297	0.00825119
chr6	158027663	158027762	3059769	0	+	0.59596	(0.58,1]	chr6	297374	4	EXON_MRNA	EXON_MRNA:INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2:ENST00000640569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	118	2	3.70825	5.013225	6.3182	0.0111705	1.74994e-4	0.0716525	0.00410754
chr1	23110448	23110548	422836	0	-	0.47	(0.45,0.485]	chr1	49676	4	INTRON	INTRON	LUZP1	ENSG00000169641.14	ENST00000302291.8:ENST00000314174.5:ENST00000471849.5:ENST00000475164.2	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.89685	5.013115	5.12938	0.0614781	0.00873194	0.158506	0.0612699
chr15	20442838	20442938	6202475	0	-	0.47	(0.45,0.485]	chr15	610288	1	SS5_PROX	SS5_PROX:INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000424611.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	0	49	2	4.89685	5.013115	5.12938	0.0614781	0.00873194	0.158506	0.0612699
chr17	15447143	15447243	6859904	0	-	0.47	(0.45,0.485]	chr17	695058	65	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000519354.1:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	49	2	4.89685	5.013115	5.12938	0.0614781	0.00873194	0.158506	0.0612699
chr13	113506955	113507055	5658346	0	+	0.56	(0.523,0.58]	chr13	555703	10	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000462877.5	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.7629	5.01311	5.26332	0.0337698	0.0167014	0.124319	0.0917029
chr19	47671256	47671356	7278329	0	+	0.53	(0.523,0.58]	chr19	747629	633	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	0	50	2	4.7629	5.01311	5.26332	0.0337698	0.0167014	0.124319	0.0917029
chr5	302977	303077	2377952	0	+	0.55	(0.523,0.58]	chr5	237467	262	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	50	2	4.7629	5.01311	5.26332	0.0337698	0.0167014	0.124319	0.0917029
chr21	45474678	45474777	7631013	0	+	0.666667	(0.58,1]	chr21	797674	3	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	8	840	2	4.70066	5.013059999999999	5.32546	6.61239e-5	7.63671e-6	0.00451657	4.24687e-4
chr22	42986734	42986834	7824000	0	-	0.49	(0.485,0.523]	chr22	820626	270	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	107	2	4.00429	5.013045	6.0218	0.00985907	0.00233191	0.0670775	0.0257012
chr17	43205478	43205577	6738175	0	+	0.454545	(0.45,0.485]	chr17	678434	13	INTRON	INTRON	NBR1	ENSG00000188554.15	ENST00000341165.10:ENST00000542611.5:ENST00000590996.6:ENST00000589872.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.9538	5.013	5.0722	0.0569772	0.00988295	0.154343	0.0664239
chr20	21147844	21147944	7447981	0	+	0.48	(0.45,0.485]	chr20	774958	18	INTRON	INTRON	KIZ	ENSG00000088970.16	ENST00000619574.4:ENST00000620891.4:ENST00000611685.4:ENST00000616848.4:ENST00000619189.5:ENST00000616679.4:ENST00000619179.4	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.9538	5.013	5.0722	0.0569772	0.00988295	0.154343	0.0664239
chr13	112524970	112525068	5752162	0	-	0.5	(0.485,0.523]	chr13	563913	21	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000462580.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	50	2	4.581	5.012945	5.44489	0.085711	0.00377098	0.181766	0.0353672
chr3	195113051	195113150	1981141	0	-	0.494949	(0.485,0.523]	chr3	201655	190	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000437101.5:ENST00000473200.1:ENST00000429994.5:ENST00000356740.5:ENST00000418940.5:ENST00000491138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	50	2	4.581	5.012945	5.44489	0.085711	0.00377098	0.181766	0.0353672
chr14	103106584	103106684	5921885	0	+	0.65	(0.58,1]	chr14	579222	4	SS3_PROX	SS3_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	99	2	4.13012	5.012765	5.89541	0.0066708	0.00116063	0.0540577	0.0157704
chr13	50536357	50536456	5597988	0	+	0.424242	(0.419,0.45]	chr13	551685	26	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1:ENST00000484869.6	lncRNA	lncRNA	lncRNA	lncRNA	1	115	2	3.74317	5.0126100000000005	6.28205	0.0102557	0.00581478	0.0684871	0.047264
chr2	55024186	55024286	1148269	0	-	0.5	(0.485,0.523]	chr2	125466	98	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	2	145	2	3.36406	5.012465	6.66087	0.00395351	0.00309962	0.0368027	0.0355173
chr1	226944579	226944679	355638	0	+	0.55	(0.523,0.58]	chr1	40145	36	INTRON	INTRON	COQ8A	ENSG00000163050.18	ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000489044.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.71922	5.0121850000000006	5.30515	0.0721601	0.00509102	0.168159	0.0433513
chr10	14548768	14548867	4633136	0	-	0.555556	(0.523,0.58]	chr10	442784	2	INTRON	INTRON	FAM107B	ENSG00000065809.14	ENST00000181796.7:ENST00000622567.4:ENST00000468747.5:ENST00000378467.8:ENST00000487335.5:ENST00000378465.7:ENST00000378458.6:ENST00000478076.5:ENST00000378462.5:ENST00000492700.5:ENST00000496330.5:ENST00000479731.5:ENST00000468492.5:ENST00000452706.6:ENST00000494865.5:ENST00000475786.5:ENST00000488576.5:ENST00000474143.5:ENST00000442012.5:ENST00000482277.5:ENST00000472095.5:ENST00000471815.5:ENST00000464952.5:ENST00000495292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.71922	5.0121850000000006	5.30515	0.0721601	0.00509102	0.168159	0.0433513
chr11	64146056	64146156	5049038	0	-	0.55	(0.523,0.58]	chr11	490257	193	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	49	2	4.71922	5.0121850000000006	5.30515	0.0721601	0.00509102	0.168159	0.0433513
chr7	219852	219952	3305853	0	+	0.54	(0.523,0.58]	chr7	320161	105	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.71922	5.0121850000000006	5.30515	0.0721601	0.00509102	0.168159	0.0433513
chr19	36211421	36211520	7367405	0	-	0.454545	(0.45,0.485]	chr19	763868	75	INTRON	INTRON	ZNF565	ENSG00000196357.12	ENST00000304116.10:ENST00000355114.9:ENST00000392173.6:ENST00000591473.1:ENST00000585994.1:ENST00000587803.1:ENST00000586648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	114	2	3.53579	5.012015	6.48824	0.00804225	0.00499158	0.0582806	0.0463896
chr3	99916438	99916538	1856135	0	-	0.49	(0.485,0.523]	chr3	189387	173	INTRON	INTRON	FILIP1L	ENSG00000168386.19	ENST00000477258.2:ENST00000354552.7:ENST00000331335.9:ENST00000398326.2	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.75939	5.01157	5.26375	0.0335928	0.0172254	0.124319	0.0923809
chr9	83261112	83261212	4323142	0	-	0.49	(0.485,0.523]	chr9	413055	122	INTRON	INTRON	FRMD3	ENSG00000172159.16	ENST00000376438.5:ENST00000376434.5:ENST00000328788.5:ENST00000304195.8:ENST00000621208.4:ENST00000465485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.75939	5.01157	5.26375	0.0335928	0.0172254	0.124319	0.0923809
chr19	7416518	7416618	7197893	0	+	0.39	(0.36,0.39]	chr19	733546	209	INTRON	INTRON	ARHGEF18	ENSG00000104880.19	ENST00000668164.2:ENST00000319670.14:ENST00000594665.2:ENST00000617428.4	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.56926	5.01143	5.4536	0.0321864	0.031369	0.127822	0.121593
chr20	8123255	8123355	7426489	0	+	0.38	(0.36,0.39]	chr20	773657	83	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.56926	5.01143	5.4536	0.0321864	0.031369	0.127822	0.121593
chr1	43423316	43423416	106288	0	+	0.56	(0.523,0.58]	chr1	12948	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SZT2	ENSG00000198198.17	ENST00000562955.2:ENST00000634258.3:ENST00000470139.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.90222	5.01136	5.1205	0.0416463	0.0125132	0.136301	0.0765738
chr12	1463645	1463745	5155033	0	+	0.53	(0.523,0.58]	chr12	500925	185	INTRON	INTRON	ERC1	ENSG00000082805.21	ENST00000543086.7:ENST00000360905.9:ENST00000542302.6:ENST00000546231.6:ENST00000347735.10:ENST00000397203.7:ENST00000440394.7:ENST00000545948.5:ENST00000589028.6:ENST00000355446.9:ENST00000588412.5:ENST00000691140.1:ENST00000543151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.90222	5.01136	5.1205	0.0416463	0.0125132	0.136301	0.0765738
chr6	35726515	35726615	3127213	0	-	0.55	(0.523,0.58]	chr6	304903	56	INTRON	INTRON	FKBP5	ENSG00000096060.15	ENST00000536438.5	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.90222	5.01136	5.1205	0.0416463	0.0125132	0.136301	0.0765738
chr19	6678455	6678555	7322501	0	-	0.62	(0.58,1]	chr19	756369	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000599899.5:ENST00000695690.1:ENST00000695691.1:ENST00000695689.1:ENST00000695653.1:ENST00000695654.1:ENST00000602229.1:ENST00000599668.1:ENST00000601008.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	545	2	4.57668	5.011279999999999	5.44588	6.67354e-4	1.29183e-6	0.0152157	1.24117e-4
chr20	62888778	62888875	7585197	0	-	0.536082	(0.523,0.58]	chr20	792848	17	UTR3	UTR3:EXON_MRNA:INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5	protein_coding	protein_coding	protein_coding	protein_coding	1	107	2	4.14168	5.0112000000000005	5.88072	0.0126258	0.00157839	0.0761905	0.0195793
chr2	44205328	44205428	780058	0	+	0.48	(0.45,0.485]	chr2	89570	29	INTRON	INTRON	PPM1B	ENSG00000138032.21	ENST00000419807.5:ENST00000282412.9:ENST00000378540.8:ENST00000378551.6:ENST00000409432.7:ENST00000409486.6:ENST00000345249.8:ENST00000409473.2:ENST00000459690.5:ENST00000487286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	109	2	4.06374	5.01109	5.95844	0.0124835	0.00216361	0.0761905	0.0242699
chr10	63285038	63285138	4698269	0	-	0.46	(0.45,0.485]	chr10	447731	159	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.83755	5.010965000000001	5.18438	0.06646	0.00773818	0.162385	0.0568726
chr12	42219263	42219362	5416908	0	-	0.444444	(0.419,0.45]	chr12	530176	64	INTRON	INTRON	YAF2	ENSG00000015153.15	ENST00000534854.7:ENST00000327791.8:ENST00000380790.4:ENST00000552109.5:ENST00000547622.5:ENST00000547351.5:ENST00000551268.5:ENST00000548661.5:ENST00000546726.5:ENST00000547724.1:ENST00000552928.5:ENST00000548917.1:ENST00000547254.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	50	2	4.81671	5.010895	5.20508	0.08258	0.00979452	0.179396	0.0664239
chr14	23094302	23094388	5939176	0	-	0.44186	(0.419,0.45]	chr14	582244	4	INTRON	INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000262710.5:ENST00000457657.5:ENST00000555053.5	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.81671	5.010895	5.20508	0.08258	0.00979452	0.179396	0.0664239
chr2	236053225	236053325	1068153	0	+	0.45	(0.419,0.45]	chr2	115775	35	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000418654.1:ENST00000466575.5:ENST00000453371.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	50	2	4.81671	5.010895	5.20508	0.08258	0.00979452	0.179396	0.0664239
chr20	38135340	38135439	7560680	0	-	0.434343	(0.419,0.45]	chr20	789688	17	INTRON	INTRON	TGM2	ENSG00000198959.12	ENST00000361475.7	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.81671	5.010895	5.20508	0.08258	0.00979452	0.179396	0.0664239
chr16	16274511	16274575	6408430	0	+	0.375	(0.36,0.39]	chr16	633350	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOMO3	ENSG00000103226.19	ENST00000676846.1:ENST00000399336.9:ENST00000677912.1:ENST00000677777.1:ENST00000678192.1:ENST00000678393.1:ENST00000678538.1:ENST00000679086.1:ENST00000574894.2:ENST00000678080.1:ENST00000677260.1:ENST00000676550.1:ENST00000263012.10:ENST00000575225.5:ENST00000677781.1:ENST00000677163.1:ENST00000678148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	52	2	4.64834	5.010705	5.37307	0.0361409	0.0272056	0.127853	0.119337
chr4	183159006	183159106	2167991	0	+	0.39	(0.36,0.39]	chr4	219488	590	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000508614.5:ENST00000448232.6:ENST00000513834.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.64834	5.010705	5.37307	0.0361409	0.0272056	0.127853	0.119337
chr16	81646379	81646477	6509763	0	+	0.438776	(0.419,0.45]	chr16	645932	2	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8:ENST00000564666.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	58	2	4.29342	5.010680000000001	5.72794	0.0526662	0.0242188	0.167062	0.106588
chr11	11877726	11877825	4799051	0	+	0.444444	(0.419,0.45]	chr11	460294	35	INTRON	INTRON	USP47	ENSG00000170242.19	ENST00000339865.9:ENST00000525257.1:ENST00000527733.7:ENST00000399455.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	117	2	3.59354	5.010675	6.42781	0.00820853	0.0080847	0.0602118	0.0592025
chr16	69799644	69799719	6485841	0	+	0.466667	(0.45,0.485]	chr16	644127	3	SS5_PROX	SS5_PROX:INTRON	WWP2	ENSG00000198373.13	ENST00000569620.5:ENST00000359154.7:ENST00000569174.5:ENST00000544162.5:ENST00000567986.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	5.00859	5.01063	5.01267	0.052901	0.011221	0.14912	0.071709
chr2	3316559	3316659	1081273	0	-	0.47	(0.45,0.485]	chr2	117633	339	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	49	2	5.00859	5.01063	5.01267	0.052901	0.011221	0.14912	0.071709
chr2	3361129	3361229	1081727	0	-	0.5	(0.485,0.523]	chr2	117664	61	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	49	2	4.71964	5.010615	5.30159	0.0718646	0.00529578	0.168159	0.044517
chr16	50622703	50622802	6452156	0	+	0.515152	(0.485,0.523]	chr16	639918	6	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	1	108	2	3.7763	5.010574999999999	6.24485	0.00665813	0.00420211	0.0540577	0.0380601
chr3	119926227	119926327	1885419	0	-	0.42	(0.419,0.45]	chr3	191353	19	INTRON	INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000677502.1:ENST00000676566.1:ENST00000650344.2:ENST00000678181.1:ENST00000678561.1:ENST00000678787.1:ENST00000679066.1:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000677885.1:ENST00000678350.1:ENST00000676775.1:ENST00000677878.1:ENST00000677875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	50	2	4.98054	5.010485	5.04043	0.0625897	0.0154548	0.160305	0.0869771
chr8	118054714	118054814	4049170	0	-	0.43	(0.419,0.45]	chr8	386022	376	INTRON	INTRON	EXT1	ENSG00000182197.13	ENST00000378204.7:ENST00000437196.1:ENST00000436216.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	4.98054	5.010485	5.04043	0.0625897	0.0154548	0.160305	0.0869771
chr6	20544949	20545048	2864040	0	+	0.393939	(0.39,0.419]	chr6	279691	92	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000613575.4	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.56871	5.010475	5.45224	0.032783	0.0315133	0.127889	0.122593
chr16	57377166	57377264	6466036	0	+	0.561224	(0.523,0.58]	chr16	641366	3	UTR5	UTR5:EXON_MRNA:INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1:ENST00000565912.1	protein_coding	protein_coding	protein_coding	protein_coding	1	130	2	3.68393	5.010355000000001	6.33678	0.0162298	3.44853e-4	0.0873195	0.00672121
chr1	14943122	14943222	43838	0	+	0.53	(0.523,0.58]	chr1	4384	127	INTRON	INTRON	KAZN	ENSG00000189337.17	ENST00000636203.1:ENST00000376030.7:ENST00000491547.1:ENST00000503743.5:ENST00000361144.9:ENST00000400798.6:ENST00000376028.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	177	2	3.18943	5.01027	6.83111	0.0183212	8.07247e-5	0.0923288	0.00233145
chr10	102649977	102650076	4576524	0	+	0.626263	(0.58,1]	chr10	437284	3	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1:ENST00000487927.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.76284	5.0100750000000005	5.25731	0.0471737	0.00358178	0.143232	0.0342681
chr19	2333504	2333603	7189454	0	+	0.606061	(0.58,1]	chr19	731774	27	INTRON	INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.76284	5.0100750000000005	5.25731	0.0471737	0.00358178	0.143232	0.0342681
chr19	39155427	39155525	7259562	0	+	0.663265	(0.58,1]	chr19	744157	32	INTRON	INTRON	PAK4	ENSG00000130669.17	ENST00000602004.1:ENST00000599470.5:ENST00000360442.8:ENST00000321944.8:ENST00000593480.5:ENST00000358301.7:ENST00000593690.5:ENST00000599386.5	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.76284	5.0100750000000005	5.25731	0.0471737	0.00358178	0.143232	0.0342681
chr4	1327326	1327426	1995312	0	+	0.7	(0.58,1]	chr4	203265	3	SS3_PROX	SS3_PROX:INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.76284	5.0100750000000005	5.25731	0.0471737	0.00358178	0.143232	0.0342681
chr7	4737638	4737738	3309895	0	+	0.6	(0.58,1]	chr7	320808	544	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.76284	5.0100750000000005	5.25731	0.0471737	0.00358178	0.143232	0.0342681
chr16	29274412	29274512	6433581	0	+	0.44	(0.419,0.45]	chr16	636745	223	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	51	2	4.78575	5.00991	5.23407	0.0486006	0.0224633	0.145074	0.108193
chr22	46648820	46648919	7744666	0	+	0.50505	(0.485,0.523]	chr22	812052	105	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.43249	5.00986	5.58723	0.0322299	0.0203514	0.12988	0.0979211
chr5	68217631	68217714	2439428	0	+	0.506024	(0.485,0.523]	chr5	242971	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	PIK3R1	ENSG00000145675.15	ENST00000521381.6:ENST00000521657.5:ENST00000517643.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.8987	5.00981	5.12092	0.0414411	0.0129327	0.136301	0.0778105
chr7	96975070	96975169	3646040	0	-	0.50505	(0.485,0.523]	chr7	350894	56	INTRON	INTRON	DLX6-AS1	ENSG00000231764.11	ENST00000430027.3:ENST00000659765.1:ENST00000458352.5:ENST00000656954.1:ENST00000605417.6:ENST00000654988.1:ENST00000658043.1:ENST00000452769.4:ENST00000437331.4:ENST00000430404.7	lncRNA	lncRNA	lncRNA	lncRNA	0	49	2	4.8987	5.00981	5.12092	0.0414411	0.0129327	0.136301	0.0778105
chr6	130871573	130871672	3260252	0	-	0.393939	(0.39,0.419]	chr6	315469	8	INTRON	INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000528282.5:ENST00000531410.5:ENST00000392427.7:ENST00000530757.5:ENST00000368128.6:ENST00000527411.5:ENST00000524581.5:ENST00000525271.5:ENST00000529208.5:ENST00000525193.5:ENST00000527659.5:ENST00000527017.6:ENST00000527423.5:ENST00000456097.6:ENST00000525198.1:ENST00000533912.1:ENST00000534166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	52	2	4.64779	5.009755	5.37172	0.0367885	0.0273358	0.129052	0.119337
chr12	45735401	45735500	5215240	0	+	0.444444	(0.419,0.45]	chr12	506503	37	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000427628.5:ENST00000426776.5:ENST00000422737.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	434	2	4.38123	5.009675	5.63812	0.00298677	3.57919e-5	0.0348377	0.00128261
chr16	85594225	85594325	6519015	0	+	0.74	(0.58,1]	chr16	646396	375	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.18518	5.0094650000000005	5.83375	0.0374658	0.00751249	0.139793	0.0576451
chr1	228157041	228157140	358157	0	+	0.707071	(0.58,1]	chr1	40434	67	INTRON	INTRON	GJC2	ENSG00000198835.4	ENST00000366714.3	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.95814	5.00942	5.0607	0.029633	0.0074469	0.116079	0.0553519
chr10	79203380	79203479	4533392	0	+	0.59596	(0.58,1]	chr10	432445	13	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.95814	5.00942	5.0607	0.029633	0.0074469	0.116079	0.0553519
chr16	85593126	85593226	6519004	0	+	0.62	(0.58,1]	chr16	646396	364	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.95814	5.00942	5.0607	0.029633	0.0074469	0.116079	0.0553519
chr19	6229180	6229279	7321303	0	-	0.656566	(0.58,1]	chr19	756087	17	INTRON	INTRON	MLLT1	ENSG00000130382.9	ENST00000252674.9	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.95814	5.00942	5.0607	0.029633	0.0074469	0.116079	0.0553519
chr20	58697185	58697285	7498655	0	+	0.65	(0.58,1]	chr20	782002	22	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	47	2	4.95814	5.00942	5.0607	0.029633	0.0074469	0.116079	0.0553519
chr4	720322	720422	1993831	0	+	0.63	(0.58,1]	chr4	203088	140	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.95814	5.00942	5.0607	0.029633	0.0074469	0.116079	0.0553519
chr5	177089349	177089449	2597781	0	+	0.6	(0.58,1]	chr5	257892	4	SS3_PROX	SS3_PROX:INTRON	FGFR4	ENSG00000160867.15	ENST00000393648.6:ENST00000503708.5:ENST00000502906.5:ENST00000514472.1:ENST00000292408.9:ENST00000507708.1:ENST00000510911.5:ENST00000513166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.95814	5.00942	5.0607	0.029633	0.0074469	0.116079	0.0553519
chrX	119236791	119236891	7943993	0	+	0.73	(0.58,1]	chrX	831204	1	SS5_PROX	SS5_PROX:INTRON	PGRMC1	ENSG00000101856.10	ENST00000535419.2:ENST00000217971.8	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.95814	5.00942	5.0607	0.029633	0.0074469	0.116079	0.0553519
chr2	98660356	98660455	1228127	0	-	0.434343	(0.419,0.45]	chr2	132983	17	INTRON	INTRON	MGAT4A	ENSG00000071073.13	ENST00000393487.6:ENST00000264968.7:ENST00000414521.6:ENST00000409391.1:ENST00000492163.5:ENST00000461884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	115	2	3.71446	5.00913	6.3038	0.00990101	0.00621762	0.0671959	0.0496139
chr13	112539164	112539264	5752307	0	-	0.45	(0.419,0.45]	chr13	563923	113	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000462580.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	114	2	4.02619	5.008995	5.9918	0.0162379	0.00294478	0.0873195	0.0300172
chr1	1044439	1044539	1171	0	+	0.71	(0.58,1]	chr1	204	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.58025	5.008885	5.43752	0.0172566	0.0156166	0.0923809	0.0849828
chr15	73685183	73685283	6150483	0	+	0.66	(0.58,1]	chr15	604911	1	SS5_PROX	SS5_PROX:INTRON	CD276	ENSG00000103855.18	ENST00000567189.5:ENST00000537340.6:ENST00000318424.9:ENST00000318443.10:ENST00000560786.6:ENST00000558689.5:ENST00000561213.5:ENST00000560928.5:ENST00000563584.5:ENST00000561416.5:ENST00000560995.5:ENST00000567582.5:ENST00000561260.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	4.58025	5.008885	5.43752	0.0172566	0.0156166	0.0923809	0.0849828
chr16	953763	953852	6531571	0	-	0.595506	(0.58,1]	chr16	648705	8	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1:ENST00000566609.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	50	2	4.58025	5.008885	5.43752	0.0172566	0.0156166	0.0923809	0.0849828
chr17	77428695	77428794	6804659	0	+	0.656566	(0.58,1]	chr17	686787	11	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	50	2	4.58025	5.008885	5.43752	0.0172566	0.0156166	0.0923809	0.0849828
chr20	43549599	43549696	7481038	0	+	0.670103	(0.58,1]	chr20	779362	15	UTR3	UTR3:EXON_MRNA	L3MBTL1	ENSG00000185513.17	ENST00000649917.1:ENST00000649698.1:ENST00000422861.3:ENST00000648715.1:ENST00000647827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	50	2	4.58025	5.008885	5.43752	0.0172566	0.0156166	0.0923809	0.0849828
chr11	120347271	120347371	4951268	0	+	0.41	(0.39,0.419]	chr11	478349	96	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7	protein_coding	protein_coding	protein_coding	protein_coding	1	113	2	3.77224	5.008825	6.24541	0.00955236	0.00517927	0.0658012	0.043878
chr22	24099363	24099460	7695354	0	+	0.515464	(0.485,0.523]	chr22	805517	7	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	200	2	3.37346	5.008505	6.64355	0.00320229	0.00144115	0.0361639	0.0183596
chr1	162523148	162523248	257042	0	+	0.31	(0.29,0.33]	chr1	30600	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2:ENST00000282169.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	282	2	4.47547	5.00847	5.54147	0.00349012	2.7159e-5	0.0379065	0.00104767
chr1	1032314	1032413	1038	0	+	0.616162	(0.58,1]	chr1	166	95	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.66416	5.0081500000000005	5.35214	0.0181452	0.0144381	0.0921579	0.0833845
chr19	39997369	39997466	7261302	0	+	0.649485	(0.58,1]	chr19	744608	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF546	ENSG00000187187.14	ENST00000597363.5:ENST00000596894.5:ENST00000599504.5:ENST00000651981.1:ENST00000593687.5:ENST00000347077.9:ENST00000601138.5:ENST00000600094.5:ENST00000602253.5:ENST00000595225.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.66416	5.0081500000000005	5.35214	0.0181452	0.0144381	0.0921579	0.0833845
chr3	58019754	58019854	1483151	0	+	0.46	(0.45,0.485]	chr3	159572	105	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	61	2	4.11446	5.008065	5.90167	0.0592571	0.0137135	0.176157	0.0799457
chr19	324034	324134	7303116	0	-	0.47	(0.45,0.485]	chr19	752407	100	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	1	119	2	3.34686	5.008025	6.66919	0.0124121	0.0035963	0.0765738	0.0384878
chr1	248854334	248854428	709836	0	-	0.489362	(0.485,0.523]	chr1	83011	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ZNF692	ENSG00000171163.16	ENST00000463519.5:ENST00000306601.9:ENST00000366471.7:ENST00000533927.5:ENST00000476503.5:ENST00000477070.6:ENST00000412341.6:ENST00000482023.5:ENST00000451251.5:ENST00000470787.6:ENST00000462037.6:ENST00000474351.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	107	2	3.86607	5.008005	6.14994	0.00788098	0.00334297	0.059464500000000003	0.0327065
chr10	79219673	79219773	4533558	0	+	0.48	(0.45,0.485]	chr10	432457	30	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	149	2	3.2476	5.00769	6.76778	0.0056886	0.0029996	0.046716	0.0348875
chr5	32158662	32158762	2630501	0	-	0.4	(0.39,0.419]	chr5	261026	144	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	152	2	3.68208	5.00758	6.33308	0.00825437	0.00216425	0.0609913	0.0242706
chr3	188820534	188820634	1658487	0	+	0.35	(0.33,0.36]	chr3	173846	599	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000459897.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.64131	5.006965	5.37262	0.0867669	0.00569729	0.182221	0.046716
chr9	91349706	91349806	4333940	0	-	0.41	(0.39,0.419]	chr9	414018	61	INTRON	INTRON	AUH	ENSG00000148090.12	ENST00000303617.5:ENST00000375731.9:ENST00000478465.5:ENST00000475023.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	54	2	4.48504	5.006774999999999	5.52851	0.0364893	0.029339	0.139793	0.116079
chr6	35915966	35916066	3128090	0	-	0.28	[0,0.29]	chr6	305002	106	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000508473.5:ENST00000512445.5:ENST00000513367.1:ENST00000507909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	50	2	4.62442	5.00661	5.3888	0.019938	0.0183035	0.100864	0.0922556
chr2	219234556	219234646	1036051	0	+	0.544444	(0.523,0.58]	chr2	112833	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANKZF1	ENSG00000163516.14	ENST00000409849.5:ENST00000323348.10:ENST00000461731.5:ENST00000477479.5:ENST00000496346.5:ENST00000463792.5:ENST00000410034.7:ENST00000465550.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	112	2	3.51663	5.006605	6.49658	0.00782908	0.00424382	0.0574276	0.0422099
chr7	47376915	47377015	3587561	0	-	0.56	(0.523,0.58]	chr7	346036	69	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	129	2	3.58132	5.00658	6.43184	0.0193579	2.62665e-4	0.0954964	0.00552802
chr10	75885024	75885124	4525019	0	+	0.61	(0.58,1]	chr10	432292	11	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	119	2	3.35086	5.00655	6.66224	0.0218816	5.8343e-5	0.101015	0.00183149
chr1	149986168	149986268	585128	0	-	0.46	(0.45,0.485]	chr1	67589	82	INTRON	INTRON	OTUD7B	ENSG00000264522.6	ENST00000581312.6:ENST00000417191.2	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.77571	5.00653	5.23735	0.0719884	0.00687715	0.168159	0.0526888
chr5	32299767	32299867	2631410	0	-	0.48	(0.45,0.485]	chr5	261138	29	INTRON	INTRON	MTMR12	ENSG00000150712.11	ENST00000280285.9:ENST00000382142.8:ENST00000264934.5:ENST00000505419.5:ENST00000513622.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.77571	5.00653	5.23735	0.0719884	0.00687715	0.168159	0.0526888
chr8	11782808	11782906	3760201	0	+	0.479592	(0.45,0.485]	chr8	361116	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NEIL2	ENSG00000154328.16	ENST00000436750.7:ENST00000455213.6:ENST00000403422.7:ENST00000284503.7:ENST00000528323.5:ENST00000528113.5:ENST00000524741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	4.77571	5.00653	5.23735	0.0719884	0.00687715	0.168159	0.0526888
chr8	96663707	96663806	3870112	0	+	0.343434	(0.33,0.36]	chr8	371341	40	INTRON	INTRON	CPQ	ENSG00000104324.16	ENST00000220763.10:ENST00000519900.1:ENST00000517742.1	protein_coding	protein_coding	protein_coding	protein_coding	1	150	2	4.23385	5.00639	5.77893	0.00674063	0.00218403	0.0543666	0.0244273
chr12	3186497	3186597	5159636	0	+	0.48	(0.45,0.485]	chr12	501339	616	INTRON	INTRON	TSPAN9	ENSG00000011105.14	ENST00000537971.5:ENST00000444315.6:ENST00000011898.10:ENST00000649909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	4.50852	5.00637	5.50422	0.0302873	0.0257993	0.126768	0.109555
chr16	85510185	85510285	6518173	0	+	0.47	(0.45,0.485]	chr16	646391	1509	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.50852	5.00637	5.50422	0.0302873	0.0257993	0.126768	0.109555
chr13	39046539	39046639	5576157	0	+	0.39	(0.36,0.39]	chr13	549885	1	SS3_PROX	SS3_PROX:INTRON	NHLRC3	ENSG00000188811.14	ENST00000470258.5:ENST00000379599.6:ENST00000379600.8	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.86249	5.006035000000001	5.14958	0.0493212	0.0181775	0.146207	0.0955836
chr1	120831758	120831849	225900	0	+	0.450549	(0.45,0.485]	chr1	24994	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF26	ENSG00000273136.8	ENST00000620612.5:ENST00000651062.1:ENST00000652444.1:ENST00000619748.4:ENST00000611287.4:ENST00000611702.4:ENST00000617913.4:ENST00000609741.2	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.95056	5.00597	5.06138	0.0492008	0.0127826	0.146142	0.0773423
chr10	118741503	118741603	4772435	0	-	0.46	(0.45,0.485]	chr10	456129	107	INTRON	INTRON	CACUL1	ENSG00000151893.15	ENST00000369151.8:ENST00000493518.5:ENST00000477583.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	4.95056	5.00597	5.06138	0.0492008	0.0127826	0.146142	0.0773423
chr17	72919648	72919748	6967485	0	-	0.46	(0.45,0.485]	chr17	710518	695	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	49	2	4.95056	5.00597	5.06138	0.0492008	0.0127826	0.146142	0.0773423
chrX	72388581	72388681	8062362	0	-	0.46	(0.45,0.485]	chrX	841349	29	INTRON	INTRON	HDAC8	ENSG00000147099.21	ENST00000373583.6:ENST00000373573.9:ENST00000648850.1:ENST00000648452.1:ENST00000649097.1:ENST00000647886.1:ENST00000648855.1:ENST00000647654.1:ENST00000648939.1:ENST00000648504.1:ENST00000648459.1:ENST00000373589.9:ENST00000650604.1:ENST00000647594.1:ENST00000647980.1:ENST00000647859.1:ENST00000650076.1:ENST00000648731.1:ENST00000649181.1:ENST00000649274.1:ENST00000650471.1:ENST00000648276.1:ENST00000470998.2:ENST00000647641.1:ENST00000649543.1:ENST00000373568.7:ENST00000648139.1:ENST00000648834.1:ENST00000648711.1:ENST00000436675.6:ENST00000647606.1:ENST00000415409.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.95056	5.00597	5.06138	0.0492008	0.0127826	0.146142	0.0773423
chr6	97220910	97221010	3206766	0	-	0.41	(0.39,0.419]	chr6	311322	339	INTRON	INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.55943	5.0059450000000005	5.45246	0.104562	0.00529344	0.19835	0.044517
chr9	104798898	104798998	4361085	0	-	0.36	(0.33,0.36]	chr9	416218	3	SS3_PROX	SS3_PROX:INTRON	ABCA1	ENSG00000165029.17	ENST00000374736.8:ENST00000678995.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.80497	5.00592	5.20687	0.041040600000000003	0.0188359	0.136289	0.0980631
chr14	102987978	102988078	6056299	0	-	0.4	(0.39,0.419]	chr14	594475	10	INTRON	INTRON	CDC42BPB	ENSG00000198752.11	ENST00000361246.7:ENST00000558321.5:ENST00000561271.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	50	2	4.69798	5.005915	5.31385	0.088901	0.0071966	0.183874	0.0543014
chr7	78941211	78941311	3621403	0	-	0.4	(0.39,0.419]	chr7	349208	367	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000440555.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.69798	5.005915	5.31385	0.088901	0.0071966	0.183874	0.0543014
chr20	33017602	33017680	7457470	0	+	0.512821	(0.485,0.523]	chr20	776395	1	INTRON	INTRON	BPIFB2	ENSG00000078898.7	ENST00000170150.4	protein_coding	protein_coding	protein_coding	protein_coding	3	389	2	4.57021	5.00572	5.44123	5.47942e-4	1.24421e-4	0.0136476	0.00322977
chr21	35297222	35297322	7659930	0	-	0.58	(0.523,0.58]	chr21	801082	2318	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000475045.6	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.13061	5.0056650000000005	5.88072	0.0533354	0.0126258	0.167062	0.0761905
chr2	163704702	163704802	1296009	0	-	0.36	(0.33,0.36]	chr2	139073	925	INTRON	INTRON	FIGN	ENSG00000182263.14	ENST00000409634.5:ENST00000333129.4:ENST00000482917.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.89468	5.00561	5.11654	0.0629186	0.00998589	0.160778	0.0667545
chr5	123514567	123514667	2523498	0	+	0.43	(0.419,0.45]	chr5	250487	16	INTRON	INTRON	CSNK1G3	ENSG00000151292.18	ENST00000345990.9:ENST00000508708.1:ENST00000512718.7:ENST00000511130.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.7549	5.0055250000000004	5.25615	0.0888907	0.00879729	0.183874	0.0615125
chr17	46199991	46200091	6917904	0	-	0.34	(0.33,0.36]	chr17	704589	62	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000575318.6:ENST00000648792.1:ENST00000639150.1:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	49	2	4.95163	5.0055	5.05937	0.0583482	0.0112642	0.155373	0.071709
chr2	237578249	237578343	1388027	0	-	0.595745	(0.58,1]	chr2	148326	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RAB17	ENSG00000124839.13	ENST00000392001.6:ENST00000264601.8:ENST00000477149.5:ENST00000409576.1:ENST00000414278.1:ENST00000409822.1:ENST00000411462.5:ENST00000430445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	161	2	4.80866	5.005445	5.20223	0.00411607	0.00109911	0.0374453	0.0199966
chr2	160465926	160466026	1293210	0	-	0.3	(0.29,0.33]	chr2	138809	331	INTRON	INTRON	RBMS1	ENSG00000153250.21	ENST00000348849.8:ENST00000474820.5:ENST00000491781.5:ENST00000477486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	144	2	3.41302	5.00513	6.59724	0.00357972	0.00308242	0.0354844	0.0342681
chr9	137779817	137779917	4266107	0	+	0.44	(0.419,0.45]	chr9	407437	1	SS5_PROX	SS5_PROX:INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	4.91849	5.004910000000001	5.09133	0.0586308	0.0174488	0.155565	0.0928044
chr1	156084981	156085080	250728	0	+	0.585859	(0.58,1]	chr1	29429	14	INTRON	INTRON	LMNA	ENSG00000160789.24	ENST00000502751.5:ENST00000368301.6:ENST00000470835.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.49116	5.004645	5.51813	0.0207449	0.013519	0.102713	0.0792526
chr2	239278979	239279079	1391498	0	-	0.54	(0.523,0.58]	chr2	148740	274	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	106	2	4.04167	5.004205	5.96674	0.0109075	0.00206682	0.0707085	0.0235758
chr18	54917712	54917812	7168201	0	-	0.48	(0.45,0.485]	chr18	728599	4	SS5_PROX	SS5_PROX:INTRON	CCDC68	ENSG00000166510.14	ENST00000591504.6:ENST00000432185.5:ENST00000592040.5:ENST00000337363.8	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.32491	5.004105	5.6833	0.0418883	0.0195193	0.149021	0.0955413
chr15	90034726	90034826	6183892	0	+	0.61	(0.58,1]	chr15	608320	275	INTRON	INTRON	ZNF710	ENSG00000140548.10	ENST00000268154.9:ENST00000559419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.54927	5.003995	5.45872	0.0643046	0.00211999	0.161669	0.0239744
chr2	240523782	240523880	1394674	0	-	0.642857	(0.58,1]	chr2	149021	20	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000405523.7:ENST00000405002.5:ENST00000484526.5:ENST00000480230.5:ENST00000459901.5:ENST00000496300.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	4.54927	5.003995	5.45872	0.0643046	0.00211999	0.161669	0.0239744
chr7	47376415	47376515	3587556	0	-	0.56	(0.523,0.58]	chr7	346036	64	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	142	2	3.56966	5.003605	6.43755	0.00473049	0.00224097	0.0449253	0.024843
chr2	42257030	42257130	773921	0	+	0.29	[0,0.29]	chr2	88940	4	SS5_PROX	SS5_PROX:INTRON	EML4	ENSG00000143924.19	ENST00000318522.10:ENST00000402711.6:ENST00000409040.1:ENST00000401738.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	380	2	3.36567	5.003595	6.64152	0.00327806	1.11996e-4	0.0367219	0.00298349
chr22	48703135	48703235	7751299	0	+	0.49	(0.485,0.523]	chr22	812283	94	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	189	2	4.86455	5.003515	5.14248	0.00761903	0.00176802	0.0561937	0.0261429
chr9	114074859	114074959	4373778	0	-	0.46	(0.45,0.485]	chr9	418051	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	AMBP	ENSG00000106927.12	ENST00000265132.8:ENST00000540645.5:ENST00000466610.6:ENST00000603230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	116	2	3.42543	5.00349	6.58155	0.0103881	0.00421879	0.0682598	0.0421633
chr16	89432924	89433024	6661163	0	-	0.5	(0.485,0.523]	chr16	666753	12	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	743	2	4.52986	5.0033	5.47674	9.16517e-4	3.10598e-6	0.0180726	2.25329e-4
chr16	89297573	89297672	6659781	0	-	0.575758	(0.523,0.58]	chr16	666648	54	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	142	2	3.60934	5.003075	6.39681	0.00509616	0.00201082	0.0467496	0.0231133
chr7	11153928	11154028	3321433	0	+	0.47	(0.45,0.485]	chr7	321865	421	INTRON	INTRON	PHF14	ENSG00000106443.17	ENST00000634607.2:ENST00000423760.6:ENST00000470665.5:ENST00000493922.5:ENST00000469407.5:ENST00000473050.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	133	2	3.73584	5.00286	6.26988	0.015867	5.20615e-4	0.0859576	0.00899129
chr16	83920464	83920563	6513129	0	+	0.59596	(0.58,1]	chr16	646141	51	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.6951	5.00273	5.31036	0.0521567	0.00312721	0.148503	0.0311915
chr1	43582721	43582807	107272	0	+	0.686047	(0.58,1]	chr1	13215	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000467464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.74346	5.00242	5.26138	0.021217	0.0121457	0.0996078	0.0754623
chr11	67435246	67435323	4881259	0	+	0.636364	(0.58,1]	chr11	470242	2	UTR3	UTR3:EXON_MRNA	RPS6KB2	ENSG00000175634.15	ENST00000312629.10:ENST00000528964.5:ENST00000525088.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.74346	5.00242	5.26138	0.021217	0.0121457	0.0996078	0.0754623
chr2	232901161	232901261	1383850	0	-	0.59	(0.58,1]	chr2	147953	4	SS5_PROX	SS5_PROX:INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000416114.3:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.74346	5.00242	5.26138	0.021217	0.0121457	0.0996078	0.0754623
chr18	27959955	27960055	7138453	0	-	0.47	(0.45,0.485]	chr18	726058	72	INTRON	INTRON	CDH2	ENSG00000170558.10	ENST00000675173.1:ENST00000675688.1:ENST00000269141.8:ENST00000399380.7:ENST00000674998.1:ENST00000676445.1:ENST00000675708.1:ENST00000430882.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	58	2	4.22352	5.0022400000000005	5.78096	0.0496712	0.0166968	0.160725	0.0884836
chr3	24385307	24385407	1715379	0	-	0.32	(0.29,0.33]	chr3	178004	363	INTRON	INTRON	THRB	ENSG00000151090.20	ENST00000646209.2:ENST00000396671.7:ENST00000356447.9:ENST00000646432.1:ENST00000643772.1:ENST00000645139.1:ENST00000642307.1:ENST00000644321.1:ENST00000646966.1:ENST00000416420.5:ENST00000413780.5:ENST00000447875.5:ENST00000453729.6:ENST00000431815.5:ENST00000447414.5:ENST00000428492.5:ENST00000418247.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.65868	5.00215	5.34562	0.0735584	0.00501126	0.17026	0.0429092
chr6	82003838	82003938	3189996	0	-	0.31	(0.29,0.33]	chr6	309363	344	INTRON	INTRON	LINC02542	ENSG00000226453.3	ENST00000667666.1:ENST00000663543.1:ENST00000668303.1:ENST00000660637.1:ENST00000668266.1:ENST00000666226.1	lncRNA	lncRNA	lncRNA	lncRNA	0	49	2	4.65868	5.00215	5.34562	0.0735584	0.00501126	0.17026	0.0429092
chr2	239085426	239085526	1389529	0	-	0.58	(0.523,0.58]	chr2	148606	2	PRIMIRNA	PRIMIRNA:INTRON	HDAC4:MIR4441	ENSG00000068024.18:ENSG00000264810.1	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000487617.5:ENST00000582623.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	0	49	2	4.83424	5.001965	5.16969	0.0387762	0.0144272	0.131324	0.0833845
chr7	47471411	47471511	3588522	0	-	0.56	(0.523,0.58]	chr7	346123	183	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.83424	5.001965	5.16969	0.0387762	0.0144272	0.131324	0.0833845
chrX	48938937	48939036	8040864	0	-	0.545455	(0.523,0.58]	chrX	838808	22	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.83424	5.001965	5.16969	0.0387762	0.0144272	0.131324	0.0833845
chr1	204083674	204083774	322156	0	+	0.66	(0.58,1]	chr1	36272	51	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1:ENST00000528591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.89007	5.00181	5.11355	0.0271806	0.00872525	0.112113	0.0612699
chr10	131959337	131959436	4616621	0	+	0.606061	(0.58,1]	chr10	441116	35	UTR3	UTR3:EXON_MRNA	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.89007	5.00181	5.11355	0.0271806	0.00872525	0.112113	0.0612699
chr11	70586529	70586629	5060138	0	-	0.64	(0.58,1]	chr11	492663	832	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	4.89007	5.00181	5.11355	0.0271806	0.00872525	0.112113	0.0612699
chr17	40351631	40351720	6734477	0	+	0.629214	(0.58,1]	chr17	677357	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RARA	ENSG00000131759.18	ENST00000254066.10:ENST00000394089.6:ENST00000425707.7:ENST00000394086.7:ENST00000394081.7:ENST00000475125.1:ENST00000420042.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.89007	5.00181	5.11355	0.0271806	0.00872525	0.112113	0.0612699
chr19	1160219	1160318	7305654	0	-	0.69697	(0.58,1]	chr19	753054	52	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5:ENST00000587655.2	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.89007	5.00181	5.11355	0.0271806	0.00872525	0.112113	0.0612699
chr2	27789790	27789890	736712	0	+	0.6	(0.58,1]	chr2	86486	67	INTRON	INTRON	MRPL33	ENSG00000243147.8	ENST00000448427.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	47	2	4.89007	5.00181	5.11355	0.0271806	0.00872525	0.112113	0.0612699
chr2	235504940	235505040	1062645	0	+	0.6	(0.58,1]	chr2	115651	97	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.89007	5.00181	5.11355	0.0271806	0.00872525	0.112113	0.0612699
chr20	33643457	33643554	7459099	0	+	0.587629	(0.58,1]	chr20	776536	26	INTRON	INTRON	CBFA2T2	ENSG00000078699.22	ENST00000342704.11:ENST00000375279.6:ENST00000346541.7:ENST00000397800.5:ENST00000492345.5:ENST00000359606.3:ENST00000543126.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.89007	5.00181	5.11355	0.0271806	0.00872525	0.112113	0.0612699
chr21	46650820	46650917	7634803	0	+	0.628866	(0.58,1]	chr21	798580	7	INTRON	INTRON	PRMT2	ENSG00000160310.19	ENST00000451211.6:ENST00000458387.6:ENST00000397638.6:ENST00000291705.11:ENST00000397637.5:ENST00000334494.8:ENST00000355680.8:ENST00000440086.5:ENST00000482508.5:ENST00000481861.1:ENST00000455177.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	4.89007	5.00181	5.11355	0.0271806	0.00872525	0.112113	0.0612699
chr22	42645104	42645198	7821281	0	-	0.638298	(0.58,1]	chr22	820387	6	INTRON	INTRON	CYB5R3	ENSG00000100243.22	ENST00000693367.1:ENST00000352397.10:ENST00000361740.9:ENST00000692152.1:ENST00000693363.1:ENST00000689795.1:ENST00000686523.1:ENST00000407332.6:ENST00000687198.1:ENST00000689001.1:ENST00000687183.1:ENST00000691295.1:ENST00000407623.8:ENST00000402438.6:ENST00000690835.1:ENST00000689195.1:ENST00000688244.1:ENST00000690993.1:ENST00000689239.1:ENST00000692344.1:ENST00000438270.2:ENST00000686129.1:ENST00000466276.2:ENST00000693716.1:ENST00000688004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.89007	5.00181	5.11355	0.0271806	0.00872525	0.112113	0.0612699
chr7	6701602	6701700	3542729	0	-	0.530612	(0.523,0.58]	chr7	342318	8	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	4	462	2	4.04254	5.00157	5.9606	0.00248532	6.19018e-6	0.0315244	3.66449e-4
chr17	19665845	19665945	6696197	0	+	0.52	(0.485,0.523]	chr17	672344	4	INTRON	INTRON	ALDH3A2	ENSG00000072210.19	ENST00000581518.6:ENST00000673136.1:ENST00000672465.1:ENST00000631291.2:ENST00000672357.1:ENST00000579855.5:ENST00000176643.11:ENST00000339618.8:ENST00000672564.1:ENST00000671878.1:ENST00000582991.6:ENST00000395575.7:ENST00000672487.1:ENST00000630662.2:ENST00000472059.6:ENST00000672567.1:ENST00000672709.1:ENST00000672059.1:ENST00000673472.1:ENST00000672608.1:ENST00000476965.5:ENST00000574078.3:ENST00000673064.1:ENST00000673516.1:ENST00000672591.1:ENST00000571163.2:ENST00000573947.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.65198	5.001469999999999	5.35096	0.0783889	0.0047171	0.175203	0.0413976
chrX	74244194	74244293	8068707	0	-	0.454545	(0.45,0.485]	chrX	841746	14	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1	lncRNA	lncRNA	lncRNA	lncRNA	4	534	2	4.83099	5.001469999999999	5.17195	8.89553e-4	2.23474e-5	0.0177608	9.11401e-4
chr9	129498242	129498338	4250758	0	+	0.614583	(0.58,1]	chr9	404722	8	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	181	2	3.00261	5.001365	7.00012	0.00295851	6.58123e-4	0.0301152	0.0150669
chr14	71068579	71068678	5874859	0	+	0.343434	(0.33,0.36]	chr14	573581	80	INTRON	INTRON	PCNX1	ENSG00000100731.16	ENST00000304743.7:ENST00000439984.7:ENST00000554691.5:ENST00000556849.2	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.49572	5.001340000000001	5.50696	0.103264	0.00418696	0.197541	0.0379935
chr5	32233354	32233437	2630725	0	-	0.337349	(0.33,0.36]	chr5	261045	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MTMR12	ENSG00000150712.11	ENST00000280285.9:ENST00000382142.8:ENST00000264934.5:ENST00000510216.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.49572	5.001340000000001	5.50696	0.103264	0.00418696	0.197541	0.0379935
chr2	239348380	239348480	1392194	0	-	0.53	(0.523,0.58]	chr2	148752	239	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	106	2	3.87732	5.00105	6.12478	0.00829271	0.00318505	0.0610772	0.0316631
chr11	68352599	68352698	4882484	0	+	0.535354	(0.523,0.58]	chr11	470548	40	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.60868	5.000975	5.39327	0.0277354	0.0226775	0.112851	0.108193
chr16	85395933	85396033	6517030	0	+	0.56	(0.523,0.58]	chr16	646391	366	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.60868	5.000975	5.39327	0.0277354	0.0226775	0.112851	0.108193
chr2	10364578	10364678	719045	0	+	0.56	(0.523,0.58]	chr2	84032	98	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.60868	5.000975	5.39327	0.0277354	0.0226775	0.112851	0.108193
chr9	134336839	134336939	4260791	0	+	0.58	(0.523,0.58]	chr9	406311	98	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	4.60868	5.000975	5.39327	0.0277354	0.0226775	0.112851	0.108193
chr1	26927264	26927364	70127	0	+	0.57	(0.523,0.58]	chr1	7863	27	INTRON	INTRON	NUDC	ENSG00000090273.14	ENST00000435827.6:ENST00000321265.10:ENST00000452707.1	protein_coding	protein_coding	protein_coding	protein_coding	3	380	2	4.6788	5.000875	5.32295	7.04378e-4	8.54099e-5	0.0156243	0.00243453
chr5	157307560	157307660	2573891	0	+	0.34	(0.33,0.36]	chr5	255850	4	SS3_PROX	SS3_PROX:INTRON	CYFIP2	ENSG00000055163.20	ENST00000616178.4:ENST00000620254.5:ENST00000435847.6:ENST00000522463.5:ENST00000521420.5:ENST00000617629.4:ENST00000618329.4	protein_coding	protein_coding	protein_coding	protein_coding	0	61	2	4.102	5.000730000000001	5.89946	0.0642879	0.0142052	0.184676	0.0816536
chr10	18560465	18560565	4642333	0	-	0.39	(0.36,0.39]	chr10	443321	81	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	4.20082	5.00044	5.80006	0.0581116	0.0191255	0.175217	0.0952349
chr1	1031916	1032015	1034	0	+	0.555556	(0.523,0.58]	chr1	166	91	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	1	129	2	3.66398	5.00038	6.33678	0.0167995	3.44853e-4	0.0884836	0.00672121
chr3	10192086	10192186	1406799	0	+	0.58	(0.523,0.58]	chr3	151140	137	INTRON	INTRON	IRAK2	ENSG00000134070.5	ENST00000256458.5	protein_coding	protein_coding	protein_coding	protein_coding	1	107	2	3.75634	5.00038	6.24442	0.00670944	0.00434055	0.0541591	0.0390182
chr7	47476106	47476206	3588569	0	-	0.48	(0.45,0.485]	chr7	346123	230	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	2	145	2	3.53167	5.000249999999999	6.46883	0.00516809	0.00274232	0.0472296	0.028553
chr19	58585854	58585954	7301967	0	+	0.46	(0.45,0.485]	chr19	752223	3	SS3_PROX	SS3_PROX:INTRON	CENPBD2P:ENSG00000286104	ENSG00000213753.11:ENSG00000286104.1	ENST00000651608.1:ENST00000487264.5:ENST00000473164.1:ENST00000652551.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:processed_transcript	0	49	2	4.7111	4.9997799999999994	5.28846	0.0781398	0.00612862	0.175203	0.0489549
chr7	101477284	101477384	3433137	0	+	0.47	(0.45,0.485]	chr7	332437	291	INTRON	INTRON	COL26A1	ENSG00000160963.14	ENST00000313669.12:ENST00000613501.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.7111	4.9997799999999994	5.28846	0.0781398	0.00612862	0.175203	0.0489549
chrX	54072149	54072247	8047854	0	-	0.459184	(0.45,0.485]	chrX	840289	40	UTR3	UTR3:EXON_MRNA	FAM120C	ENSG00000184083.12	ENST00000375180.7	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.7111	4.9997799999999994	5.28846	0.0781398	0.00612862	0.175203	0.0489549
chr10	75841382	75841482	4524581	0	+	0.58	(0.523,0.58]	chr10	432282	580	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.50593	4.999575	5.49322	0.094303	0.00324246	0.188571	0.0319521
chr15	41464885	41464985	6084415	0	+	0.39	(0.36,0.39]	chr15	598255	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RTF1	ENSG00000137815.15	ENST00000389629.9	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.39677	4.999535	5.6023	0.0422707	0.0258522	0.149195	0.109555
chr22	28917881	28917981	7705620	0	+	0.49	(0.485,0.523]	chr22	806320	4	SS5_PROX	SS5_PROX:INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7:ENST00000402174.5	protein_coding	protein_coding	protein_coding	protein_coding	1	106	2	3.95058	4.999465	6.04835	0.00941539	0.00268525	0.0653252	0.0282638
chr1	108625724	108625822	199702	0	+	0.489796	(0.485,0.523]	chr1	21631	11	EXON_MRNA	EXON_MRNA:INTRON	FAM102B	ENSG00000162636.16	ENST00000405454.1:ENST00000370035.8:ENST00000483371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	4.60518	4.999435	5.39369	0.0275819	0.0233371	0.112782	0.110098
chr11	68415733	68415827	4883127	0	+	0.489362	(0.485,0.523]	chr11	470616	14	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.60518	4.999435	5.39369	0.0275819	0.0233371	0.112782	0.110098
chr12	121221117	121221215	5341280	0	+	0.489796	(0.485,0.523]	chr12	521600	35	INTRON	INTRON	P2RX4	ENSG00000135124.16	ENST00000359949.11:ENST00000543430.5:ENST00000337233.9:ENST00000543984.5:ENST00000499638.6:ENST00000543318.5:ENST00000540930.5:ENST00000538701.5:ENST00000542067.5:ENST00000541187.5:ENST00000538417.2:ENST00000314442.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	4.60518	4.999435	5.39369	0.0275819	0.0233371	0.112782	0.110098
chr19	8239585	8239685	7200277	0	+	0.51	(0.485,0.523]	chr19	734186	141	INTRON	INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559490.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	51	2	4.60518	4.999435	5.39369	0.0275819	0.0233371	0.112782	0.110098
chr3	47749583	47749683	1763208	0	-	0.5	(0.485,0.523]	chr3	181849	32	INTRON	INTRON	SMARCC1	ENSG00000173473.11	ENST00000254480.10:ENST00000425518.5:ENST00000454240.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.60518	4.999435	5.39369	0.0275819	0.0233371	0.112782	0.110098
chr16	85432218	85432318	6517393	0	+	0.54	(0.523,0.58]	chr16	646391	729	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.5249	4.999359999999999	5.47382	0.0266135	0.0244797	0.118113	0.106683
chr17	7110174	7110272	6847735	0	-	0.612245	(0.58,1]	chr17	693423	9	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	728	2	4.88706	4.9991	5.11114	1.91049e-4	2.51721e-6	0.00779591	1.94522e-4
chr16	85245664	85245764	6515525	0	+	0.48	(0.45,0.485]	chr16	646377	179	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	54	2	4.41963	4.999085	5.57854	0.0355247	0.0230065	0.137983	0.102982
chr16	16037202	16037301	6406881	0	+	0.484848	(0.45,0.485]	chr16	633041	2	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.88567	4.998985	5.1123	0.0458344	0.0146126	0.142336	0.0837727
chr9	104909662	104909762	4362241	0	-	0.5	(0.485,0.523]	chr9	416432	55	INTRON	INTRON	ABCA1	ENSG00000165029.17	ENST00000374736.8:ENST00000678995.1:ENST00000423487.6:ENST00000374733.1	protein_coding	protein_coding	protein_coding	protein_coding	2	179	2	3.37533	4.998495	6.62166	0.0131144	1.59261e-4	0.0783696	0.00385073
chr17	75824515	75824614	6800560	0	+	0.343434	(0.33,0.36]	chr17	686260	2	UTR3	UTR3:EXON_MRNA	UNK	ENSG00000132478.10	ENST00000589666.6	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.93777	4.9984850000000005	5.0592	0.0504445	0.0144674	0.148216	0.0833845
chr2	46332193	46332293	784990	0	+	0.36	(0.33,0.36]	chr2	89746	339	INTRON	INTRON	EPAS1	ENSG00000116016.14	ENST00000460015.1:ENST00000449347.5:ENST00000263734.5:ENST00000467888.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.93777	4.9984850000000005	5.0592	0.0504445	0.0144674	0.148216	0.0833845
chr6	116683246	116683345	2990412	0	+	0.333333	(0.33,0.36]	chr6	292932	13	INTRON	INTRON	KPNA5	ENSG00000196911.11	ENST00000413340.5:ENST00000368564.7:ENST00000356348.6	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.93777	4.9984850000000005	5.0592	0.0504445	0.0144674	0.148216	0.0833845
chr4	128858840	128858938	2132076	0	+	0.5	(0.485,0.523]	chr4	216567	10	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.50634	4.997999999999999	5.48966	0.0939553	0.0033837199999999998	0.188571	0.0328791
chr16	87271123	87271223	6653953	0	-	0.45	(0.419,0.45]	chr16	665597	1297	INTRON	INTRON	C16orf95	ENSG00000260456.7	ENST00000562840.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	50	2	4.69033	4.997905	5.30548	0.0958674	0.00792071	0.189038	0.057762
chr2	65394478	65394578	1171800	0	-	0.43	(0.419,0.45]	chr2	127582	139	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.69033	4.997905	5.30548	0.0958674	0.00792071	0.189038	0.057762
chr10	131919685	131919784	4616213	0	+	0.565657	(0.523,0.58]	chr10	441069	67	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	4.68785	4.9979	5.30795	0.0315825	0.0194172	0.120781	0.0994526
chr3	13205824	13205924	1691200	0	-	0.57	(0.523,0.58]	chr3	176566	413	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.68785	4.9979	5.30795	0.0315825	0.0194172	0.120781	0.0994526
chr12	57754734	57754834	5442150	0	-	0.52	(0.485,0.523]	chr12	535644	24	INTRON	INTRON	CDK4	ENSG00000135446.17	ENST00000552862.1	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.52142	4.997835	5.47425	0.0273555	0.0243396	0.119337	0.106588
chr3	105461053	105461153	1526406	0	+	0.37	(0.36,0.39]	chr3	162334	198	INTRON	INTRON	ALCAM	ENSG00000170017.12	ENST00000306107.9:ENST00000470756.5:ENST00000472644.6:ENST00000481337.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	137	2	3.72409	4.997745	6.2714	0.0179032	7.13729e-4	0.0918791	0.0112151
chr21	44859462	44859562	7678429	0	-	0.46	(0.45,0.485]	chr21	802754	27	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000397886.3:ENST00000474737.5:ENST00000494690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	140	2	4.03598	4.99746	5.95894	0.00940026	0.00119342	0.0653252	0.016037
chr1	161354584	161354683	254316	0	+	0.313131	(0.29,0.33]	chr1	30344	136	INTRON	INTRON	SDHC	ENSG00000143252.16	ENST00000367975.7:ENST00000342751.8:ENST00000432287.6:ENST00000513009.5:ENST00000392169.6:ENST00000504963.5:ENST00000470743.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	4.67908	4.99713	5.31518	0.0288318	0.0209202	0.116067	0.102931
chr9	134042646	134042743	4430464	0	-	0.298969	(0.29,0.33]	chr9	423369	3	INTRON	INTRON	BRD3	ENSG00000169925.17	ENST00000303407.12:ENST00000371834.6	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.67908	4.99713	5.31518	0.0288318	0.0209202	0.116067	0.102931
chr7	129685524	129685624	3478843	0	+	0.44	(0.419,0.45]	chr7	336224	74	INTRON	INTRON	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000454688.5:ENST00000223190.8:ENST00000311967.6:ENST00000393230.6:ENST00000353868.5	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.85365	4.997075000000001	5.1405	0.0550015	0.0197641	0.153337	0.100774
chr2	134217121	134217221	896402	0	+	0.36	(0.33,0.36]	chr2	101196	896	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	148	2	3.36134	4.996945	6.63255	0.00457936	0.0040075	0.0410079	0.0404399
chr17	77449166	77449266	6804865	0	+	0.57	(0.523,0.58]	chr17	686789	21	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.905	4.99691	5.08882	0.0563605	0.00834774	0.154188	0.0598672
chr2	241302823	241302923	1396921	0	-	0.53	(0.523,0.58]	chr2	149481	2	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000310931.10:ENST00000391976.6:ENST00000428482.5:ENST00000441124.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000420451.5:ENST00000417540.5:ENST00000462130.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.905	4.99691	5.08882	0.0563605	0.00834774	0.154188	0.0598672
chr4	152908864	152908964	2150058	0	+	0.38	(0.36,0.39]	chr4	217862	202	INTRON	INTRON	ARFIP1	ENSG00000164144.16	ENST00000451320.6:ENST00000429148.6:ENST00000353617.7:ENST00000405727.6:ENST00000356064.3:ENST00000514499.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.6317	4.996905	5.36211	0.0950937	0.00643924	0.189021	0.0503748
chr8	85239168	85239268	3852652	0	+	0.39	(0.36,0.39]	chr8	369660	9	INTRON	INTRON	CA13	ENSG00000185015.8	ENST00000517831.5:ENST00000517298.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	50	2	4.6317	4.996905	5.36211	0.0950937	0.00643924	0.189021	0.0503748
chr10	100550030	100550130	4569166	0	+	0.46	(0.45,0.485]	chr10	436105	20	UTR3	UTR3:EXON_MRNA	HIF1AN	ENSG00000166135.14	ENST00000299163.7	protein_coding	protein_coding	protein_coding	protein_coding	3	174	2	3.25802	4.996840000000001	6.73566	0.00318291	0.0031481	0.0360488	0.0313422
chr1	225639597	225639697	673871	0	-	0.42	(0.419,0.45]	chr1	79189	595	INTRON	INTRON	ENAH	ENSG00000154380.19	ENST00000366843.7:ENST00000366844.7:ENST00000635051.1:ENST00000284563.7	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.7145	4.996589999999999	5.27868	0.0457732	0.0256236	0.142336	0.115966
chr12	57160696	57160792	5240733	0	+	0.4375	(0.419,0.45]	chr12	510232	3	SS3_PROX	SS3_PROX:INTRON	LRP1	ENSG00000123384.14	ENST00000243077.8	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.7145	4.996589999999999	5.27868	0.0457732	0.0256236	0.142336	0.115966
chr16	85381439	85381539	6516885	0	+	0.44	(0.419,0.45]	chr16	646391	221	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.7145	4.996589999999999	5.27868	0.0457732	0.0256236	0.142336	0.115966
chr18	31499294	31499394	7038272	0	+	0.44	(0.419,0.45]	chr18	718816	6	INTRON	INTRON	DSG2	ENSG00000046604.14	ENST00000261590.13:ENST00000585206.1:ENST00000683654.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.7145	4.996589999999999	5.27868	0.0457732	0.0256236	0.142336	0.115966
chr9	123488919	123489019	4397465	0	-	0.5	(0.485,0.523]	chr9	419652	29	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.68434	4.996354999999999	5.30837	0.0314138	0.0200045	0.12069	0.100864
chr5	857271	857371	2607927	0	-	0.61	(0.58,1]	chr5	259417	63	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	1	135	2	2.79178	4.996345	7.20091	0.0565563	9.5483e-6	0.154343	4.9724e-4
chr11	70557130	70557230	5059844	0	-	0.39	(0.36,0.39]	chr11	492663	538	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	135	2	3.53359	4.996085	6.45858	0.024369	4.35017e-4	0.106628	0.007918
chrX	110116636	110116735	7934769	0	+	0.323232	(0.29,0.33]	chrX	830401	71	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000461715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.91217	4.99607	5.07997	0.0522244	0.00913217	0.148503	0.0632458
chr9	93661636	93661733	4184514	0	+	0.391753	(0.39,0.419]	chr9	397767	7	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.63037	4.99596	5.36155	0.0963077	0.00648185	0.189169	0.0503748
chrY	7276276	7276375	8133967	0	+	0.525253	(0.523,0.58]	chrY	847763	14	INTRON	INTRON	PRKY	ENSG00000099725.14	ENST00000528056.5:ENST00000533551.5	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	0	48	2	4.84569	4.995855000000001	5.14602	0.0610722	0.00734367	0.158506	0.0550721
chr7	217258	217358	3305827	0	+	0.6	(0.58,1]	chr7	320161	79	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	117	2	3.43525	4.995835	6.55642	0.0187495	8.22236e-5	0.0936297	0.00236215
chr17	57349122	57349222	6760696	0	+	0.58	(0.523,0.58]	chr17	682104	384	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	4.96197	4.995620000000001	5.02927	0.0521137	0.0095202	0.148503	0.0650078
chr9	69053360	69053460	4163989	0	+	0.53	(0.523,0.58]	chr9	395732	1	SS5_PROX	SS5_PROX:INTRON	FXN	ENSG00000165060.15	ENST00000644653.1:ENST00000484259.3:ENST00000396366.6:ENST00000377270.8:ENST00000498653.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.96197	4.995620000000001	5.02927	0.0521137	0.0095202	0.148503	0.0650078
chr16	14090724	14090823	6399588	0	+	0.383838	(0.36,0.39]	chr16	632159	110	INTRON	INTRON	MRTFB	ENSG00000186260.17	ENST00000571589.6:ENST00000574998.5:ENST00000572400.5:ENST00000574045.5:ENST00000575537.5:ENST00000318282.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	49	2	4.885	4.99554	5.10608	0.0697729	0.0111429	0.167185	0.071709
chr5	59891767	59891867	2673059	0	-	0.39	(0.36,0.39]	chr5	264372	943	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000502484.6:ENST00000405053.7:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	49	2	4.94194	4.9954350000000005	5.04893	0.064883	0.0125348	0.162218	0.0765738
chr10	100548436	100548535	4569150	0	+	0.494949	(0.485,0.523]	chr10	436105	4	UTR3	UTR3:EXON_MRNA	HIF1AN	ENSG00000166135.14	ENST00000299163.7	protein_coding	protein_coding	protein_coding	protein_coding	2	142	2	3.4747	4.995435	6.51617	0.00406194	0.00295385	0.0413652	0.0300958
chr18	76423461	76423560	7179354	0	-	0.555556	(0.523,0.58]	chr18	730080	428	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	1	128	2	3.4477	4.99509	6.54248	0.0242383	1.90498e-4	0.106588	0.0043642
chr3	124732916	124733016	1555291	0	+	0.37	(0.36,0.39]	chr3	164780	5	PRIMIRNA	PRIMIRNA:INTRON	UMPS:MIR544B	ENSG00000114491.14:ENSG00000265981.1	ENST00000462091.5:ENST00000467167.5:ENST00000232607.7:ENST00000460034.5:ENST00000474588.5:ENST00000479719.5:ENST00000497791.5:ENST00000582372.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	1	136	2	3.66953	4.995025	6.32052	0.0195747	6.27541e-4	0.0955413	0.0102323
chr6	12065711	12065811	2854676	0	+	0.32	(0.29,0.33]	chr6	278961	266	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.85285	4.995005	5.13716	0.0567079	0.00805226	0.154343	0.0582806
chr11	70765366	70765466	5061935	0	-	0.5	(0.485,0.523]	chr11	492701	475	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	107	2	3.74509	4.9949699999999995	6.24485	0.00665813	0.0045454	0.0540577	0.0401487
chr16	85456707	85456807	6517638	0	+	0.68	(0.58,1]	chr16	646391	974	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	135	2	4.39644	4.99484	5.59324	0.00271982	0.0014734	0.0331692	0.0185589
chr10	92351797	92351896	4550032	0	+	0.292929	(0.29,0.33]	chr10	434234	7	UTR3	UTR3:EXON_MRNA	MARCHF5	ENSG00000198060.10	ENST00000358935.3	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.96914	4.99478	5.02042	0.0481918	0.0103902	0.144601	0.0682598
chr4	185735346	185735445	2371552	0	-	0.30303	(0.29,0.33]	chr4	237037	8	INTRON	INTRON	SORBS2	ENSG00000154556.19	ENST00000284776.11:ENST00000695409.1:ENST00000319471.13:ENST00000437304.6:ENST00000449407.6:ENST00000355634.9:ENST00000451974.6:ENST00000393528.7:ENST00000487184.2:ENST00000695410.1:ENST00000319454.10:ENST00000695411.1:ENST00000470685.5:ENST00000445343.5:ENST00000439914.5:ENST00000444771.5:ENST00000450341.5:ENST00000430503.5:ENST00000445115.5:ENST00000457247.5:ENST00000456596.5:ENST00000425679.5:ENST00000439049.5:ENST00000451958.5:ENST00000444781.5:ENST00000414724.5:ENST00000419063.5:ENST00000393523.6:ENST00000420158.5:ENST00000421639.5:ENST00000493709.5:ENST00000457934.5:ENST00000431902.5:ENST00000415274.5:ENST00000435480.5:ENST00000432655.5:ENST00000451701.5:ENST00000428330.5:ENST00000464975.5:ENST00000464819.5:ENST00000478249.5:ENST00000452351.5:ENST00000429056.5:ENST00000463104.5:ENST00000456060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	4.96914	4.99478	5.02042	0.0481918	0.0103902	0.144601	0.0682598
chr3	61783591	61783690	1488837	0	+	0.565657	(0.523,0.58]	chr3	160092	123	INTRON	INTRON	PTPRG	ENSG00000144724.20	ENST00000474889.6:ENST00000295874.14	protein_coding	protein_coding	protein_coding	protein_coding	2	142	2	3.72222	4.9947099999999995	6.2672	0.00644151	0.00147148	0.0530091	0.0185589
chr2	36887026	36887126	1119770	0	-	0.4	(0.39,0.419]	chr2	122385	2	SS3_PROX	SS3_PROX:INTRON	STRN	ENSG00000115808.12	ENST00000263918.9:ENST00000379213.3:ENST00000495595.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	4.88366	4.994585	5.10551	0.0707789	0.0112089	0.168159	0.071709
chr20	33661534	33661634	7546038	0	-	0.41	(0.39,0.419]	chr20	787636	1	SS5_PROX	SS5_PROX:INTRON	NECAB3	ENSG00000125967.17	ENST00000375238.8:ENST00000246190.11:ENST00000488489.5:ENST00000606525.5:ENST00000483813.5:ENST00000485399.5:ENST00000485976.5:ENST00000478237.5:ENST00000494174.5:ENST00000463246.5:ENST00000480994.5:ENST00000606690.5:ENST00000439478.5:ENST00000607805.5:ENST00000498353.5:ENST00000493590.1:ENST00000606106.1:ENST00000606699.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.88366	4.994585	5.10551	0.0707789	0.0112089	0.168159	0.071709
chr9	93662406	93662506	4184522	0	+	0.4	(0.39,0.419]	chr9	397768	1	SS3_PROX	SS3_PROX:INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.88366	4.994585	5.10551	0.0707789	0.0112089	0.168159	0.071709
chr7	47515740	47515840	3588970	0	-	0.4	(0.39,0.419]	chr7	346138	84	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.9406	4.994479999999999	5.04836	0.0658437	0.0126072	0.162385	0.0768036
chr20	20591614	20591714	7535137	0	-	0.44	(0.419,0.45]	chr20	786387	3	SS3_PROX	SS3_PROX:INTRON	RALGAPA2	ENSG00000188559.16	ENST00000202677.12:ENST00000430436.5:ENST00000495793.2	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.29342	4.99441	5.6954	0.0526662	0.0254103	0.167062	0.108573
chr3	195944242	195944342	1985084	0	-	0.52	(0.485,0.523]	chr3	201965	197	INTRON	INTRON	ENSG00000260261	ENSG00000260261.2	ENST00000607976.2:ENST00000641484.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	48	2	4.84611	4.994295	5.14248	0.0608067	0.00761903	0.158506	0.0561937
chr12	421617	421716	5148401	0	+	0.515152	(0.485,0.523]	chr12	500517	26	INTRON	INTRON	CCDC77	ENSG00000120647.10	ENST00000540180.5:ENST00000422000.5:ENST00000543504.5:ENST00000540344.5:ENST00000412006.6:ENST00000239830.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.96239	4.99406	5.02573	0.0518747	0.00985879	0.148503	0.0664239
chr17	672202	672301	6823911	0	-	0.50505	(0.485,0.523]	chr17	689839	10	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000679680.1:ENST00000576019.6:ENST00000679961.1:ENST00000681120.1:ENST00000575207.6:ENST00000680660.1:ENST00000680970.1:ENST00000680241.1:ENST00000681423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	4.96239	4.99406	5.02573	0.0518747	0.00985879	0.148503	0.0664239
chr17	77469654	77469754	6805075	0	+	0.51	(0.485,0.523]	chr17	686810	27	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.96239	4.99406	5.02573	0.0518747	0.00985879	0.148503	0.0664239
chr2	231092576	231092676	1048007	0	+	0.51	(0.485,0.523]	chr2	114152	50	INTRON	INTRON	PSMD1	ENSG00000173692.14	ENST00000677180.1:ENST00000677259.1:ENST00000676818.1:ENST00000679034.1:ENST00000677230.1:ENST00000678241.1:ENST00000676740.1:ENST00000678460.1:ENST00000619128.5:ENST00000677000.1:ENST00000678679.1:ENST00000678112.1:ENST00000409643.6:ENST00000677724.1:ENST00000679095.1:ENST00000676739.1:ENST00000678632.1:ENST00000677233.1:ENST00000676506.1:ENST00000431051.6:ENST00000308696.11:ENST00000678140.1:ENST00000373635.9:ENST00000677158.1:ENST00000677195.1:ENST00000447633.1:ENST00000488354.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	4.96239	4.99406	5.02573	0.0518747	0.00985879	0.148503	0.0664239
chr3	114664552	114664652	1878444	0	-	0.49	(0.485,0.523]	chr3	190891	53	INTRON	INTRON	ZBTB20	ENSG00000181722.17	ENST00000675478.1:ENST00000357258.8:ENST00000462705.5:ENST00000471418.5:ENST00000464560.5:ENST00000479879.5:ENST00000463890.5:ENST00000491500.5:ENST00000480832.5:ENST00000492665.5:ENST00000463497.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.96239	4.99406	5.02573	0.0518747	0.00985879	0.148503	0.0664239
chr9	137569630	137569730	4435760	0	-	0.55	(0.523,0.58]	chr9	424466	41	INTRON	INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000475100.5:ENST00000472113.5:ENST00000485189.5:ENST00000467768.5:ENST00000477690.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	130	2	3.77972	4.99406	6.2084	0.0137305	4.95211e-4	0.0800134	0.00865935
chrX	40080958	40081057	8027859	0	-	0.494949	(0.485,0.523]	chrX	837638	26	INTRON	INTRON	BCOR	ENSG00000183337.18	ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000673391.1:ENST00000406200.4:ENST00000412952.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.96239	4.99406	5.02573	0.0518747	0.00985879	0.148503	0.0664239
chr8	119779205	119779302	4055797	0	-	0.381443	(0.36,0.39]	chr8	386346	7	INTRON	INTRON	TAF2	ENSG00000064313.13	ENST00000378164.7:ENST00000685503.1:ENST00000690808.1:ENST00000692707.1:ENST00000685202.1:ENST00000688645.1:ENST00000685684.1:ENST00000689399.1:ENST00000685876.1:ENST00000689341.1:ENST00000691057.1:ENST00000686098.1:ENST00000690922.1:ENST00000685663.1:ENST00000692518.1:ENST00000688037.1:ENST00000691237.1:ENST00000684862.1:ENST00000685755.1:ENST00000691880.1:ENST00000523904.2:ENST00000689919.1:ENST00000685824.1:ENST00000685993.1:ENST00000692829.1:ENST00000692916.1:ENST00000692711.1:ENST00000529653.2:ENST00000686879.1:ENST00000685235.1:ENST00000690144.1:ENST00000689164.1:ENST00000691847.1:ENST00000523734.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	111	2	3.88364	4.99401	6.10438	0.0117824	0.00394555	0.073726	0.0367806
chr15	67101923	67102023	6139437	0	+	0.48	(0.45,0.485]	chr15	603944	25	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1:ENST00000559092.1:ENST00000560175.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	146	2	3.31829	4.993740000000001	6.66919	0.00476164	0.0035963	0.0414441	0.0384878
chr1	94476902	94476997	187443	0	+	0.389474	(0.36,0.39]	chr1	20333	8	INTRON	INTRON	ABCD3	ENSG00000117528.14	ENST00000370214.9:ENST00000647998.2:ENST00000315713.5	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.98942	4.9930699999999995	4.99672	0.0604395	0.0141427	0.158506	0.0833845
chr3	99872331	99872431	1517670	0	+	0.37	(0.36,0.39]	chr3	161648	539	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	49	2	4.98942	4.9930699999999995	4.99672	0.0604395	0.0141427	0.158506	0.0833845
chr4	152527974	152528074	2355572	0	-	0.37	(0.36,0.39]	chr4	235300	382	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.98942	4.9930699999999995	4.99672	0.0604395	0.0141427	0.158506	0.0833845
chr8	85239068	85239168	3852651	0	+	0.37	(0.36,0.39]	chr8	369660	8	INTRON	INTRON	CA13	ENSG00000185015.8	ENST00000517831.5:ENST00000517298.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	49	2	4.98942	4.9930699999999995	4.99672	0.0604395	0.0141427	0.158506	0.0833845
chr15	82382551	82382650	6165736	0	+	0.353535	(0.33,0.36]	chr15	606819	268	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	187	2	3.45253	4.993065	6.5336	0.0125985	3.03099e-4	0.0761905	0.00611977
chr17	72559719	72559819	6963908	0	-	0.51	(0.485,0.523]	chr17	710389	253	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	2	149	2	4.0184	4.992785	5.96717	0.0108319	0.00064972300000000005	0.0707085	0.0105023
chr2	120278314	120278414	887955	0	+	0.62	(0.58,1]	chr2	100429	3	SS3_PROX	SS3_PROX:INTRON	RALB	ENSG00000144118.14	ENST00000447591.5:ENST00000420510.5:ENST00000431732.5:ENST00000272519.10:ENST00000631312.2:ENST00000470417.1:ENST00000412383.5:ENST00000449649.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.62403	4.99278	5.36153	0.0578275	0.00273899	0.154343	0.028553
chr6	169651429	169651529	3304378	0	-	0.5	(0.485,0.523]	chr6	319870	1	SS5_PROX	SS5_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	142	2	3.67338	4.9927600000000005	6.31214	0.00589975	0.00172431	0.0506158	0.0208204
chr1	26927564	26927664	70130	0	+	0.53	(0.523,0.58]	chr1	7863	30	INTRON	INTRON	NUDC	ENSG00000090273.14	ENST00000435827.6:ENST00000321265.10:ENST00000452707.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.78384	4.99244	5.20104	0.0663135	0.00648051	0.162385	0.0503748
chr14	103503485	103503572	5923323	0	+	0.528736	(0.523,0.58]	chr14	579488	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000303622.13:ENST00000216288.11:ENST00000678091.1:ENST00000676745.1:ENST00000679299.1:ENST00000678661.1:ENST00000677352.1:ENST00000676944.1:ENST00000677023.1:ENST00000678213.1:ENST00000678373.1:ENST00000679005.1:ENST00000556463.5:ENST00000555235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	4.78384	4.99244	5.20104	0.0663135	0.00648051	0.162385	0.0503748
chr17	80633963	80634062	6809794	0	+	0.525253	(0.523,0.58]	chr17	687816	78	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	4.78384	4.99244	5.20104	0.0663135	0.00648051	0.162385	0.0503748
chr21	37368015	37368073	7618979	0	+	0.551724	(0.523,0.58]	chr21	796008	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.78384	4.99244	5.20104	0.0663135	0.00648051	0.162385	0.0503748
chr12	42219661	42219761	5416912	0	-	0.41	(0.39,0.419]	chr12	530176	68	INTRON	INTRON	YAF2	ENSG00000015153.15	ENST00000534854.7:ENST00000327791.8:ENST00000380790.4:ENST00000552109.5:ENST00000547622.5:ENST00000547351.5:ENST00000551268.5:ENST00000548661.5:ENST00000546726.5:ENST00000547724.1:ENST00000552928.5:ENST00000548917.1:ENST00000547254.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	49	2	4.82439	4.992435	5.16048	0.0762206	0.00999413	0.174484	0.0667545
chr2	11814388	11814487	722752	0	+	0.393939	(0.39,0.419]	chr2	84465	89	INTRON	INTRON	LPIN1	ENSG00000134324.12	ENST00000449576.6:ENST00000425416.6:ENST00000396097.5:ENST00000396099.5:ENST00000256720.6:ENST00000674199.1:ENST00000404113.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	49	2	4.82439	4.992435	5.16048	0.0762206	0.00999413	0.174484	0.0667545
chr4	105436156	105436255	2298120	0	-	0.40404	(0.39,0.419]	chr4	231293	115	INTRON	INTRON	PPA2	ENSG00000138777.20	ENST00000341695.10:ENST00000348706.9:ENST00000509031.5:ENST00000351450.10:ENST00000354147.7:ENST00000432483.6:ENST00000515567.5:ENST00000503171.5:ENST00000510015.5:ENST00000509426.5:ENST00000508518.5:ENST00000514209.5:ENST00000506815.5:ENST00000457404.6:ENST00000502833.5:ENST00000504028.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	49	2	4.82439	4.992435	5.16048	0.0762206	0.00999413	0.174484	0.0667545
chr6	10588413	10588513	2850431	0	+	0.41	(0.39,0.419]	chr6	278695	11	INTRON	INTRON	GCNT2	ENSG00000111846.20	ENST00000410107.5:ENST00000489225.5:ENST00000397423.7:ENST00000495262.7:ENST00000475577.5:ENST00000489819.5:ENST00000474518.1:ENST00000379597.7:ENST00000485764.1:ENST00000461400.1:ENST00000316170.9:ENST00000459872.1:ENST00000265012.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	49	2	4.82439	4.992435	5.16048	0.0762206	0.00999413	0.174484	0.0667545
chr6	28282604	28282697	2888964	0	+	0.408602	(0.39,0.419]	chr6	281257	3	INTRON	INTRON	PGBD1	ENSG00000137338.6	ENST00000259883.3:ENST00000682144.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.82439	4.992435	5.16048	0.0762206	0.00999413	0.174484	0.0667545
chr15	62012164	62012264	6293527	0	-	0.36	(0.33,0.36]	chr15	619999	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	VPS13C	ENSG00000129003.19	ENST00000249837.7:ENST00000644861.2:ENST00000645819.1:ENST00000395898.3	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.70894	4.992255	5.27557	0.0798152	0.00707628	0.176933	0.0540197
chr3	172105959	172106059	1628127	0	+	0.34	(0.33,0.36]	chr3	170535	587	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	4.70894	4.992255	5.27557	0.0798152	0.00707628	0.176933	0.0540197
chr7	6692803	6692903	3542638	0	-	0.36	(0.33,0.36]	chr7	342302	1	SS3_PROX	SS3_PROX:INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000404360.5:ENST00000342651.9	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.70894	4.992255	5.27557	0.0798152	0.00707628	0.176933	0.0540197
chr7	66663177	66663277	3382036	0	+	0.34	(0.33,0.36]	chr7	326325	82	INTRON	INTRON	ENSG00000226824	ENSG00000226824.8	ENST00000693151.1:ENST00000656515.2:ENST00000448096.1:ENST00000439360.5:ENST00000657342.1:ENST00000428557.1	lncRNA	lncRNA	lncRNA	lncRNA	0	49	2	4.70894	4.992255	5.27557	0.0798152	0.00707628	0.176933	0.0540197
chr12	12931496	12931596	5173035	0	+	0.41	(0.39,0.419]	chr12	503617	33	INTRON	INTRON	GPRC5D-AS1	ENSG00000247498.11	ENST00000543515.8:ENST00000545914.5:ENST00000660059.1:ENST00000540198.1:ENST00000542078.2:ENST00000536029.1	lncRNA	lncRNA	lncRNA	lncRNA	0	49	2	4.98886	4.99212	4.99538	0.0613573	0.0142222	0.158506	0.0833845
chr14	63605263	63605363	5993072	0	-	0.4	(0.39,0.419]	chr14	587828	49	INTRON	INTRON	WDR89	ENSG00000140006.12	ENST00000620954.2:ENST00000394942.2:ENST00000267522.7:ENST00000554717.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.98886	4.99212	4.99538	0.0613573	0.0142222	0.158506	0.0833845
chr7	47524936	47525036	3589062	0	-	0.4	(0.39,0.419]	chr7	346138	176	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.98886	4.99212	4.99538	0.0613573	0.0142222	0.158506	0.0833845
chr16	57744811	57744911	6467073	0	+	0.61	(0.58,1]	chr16	641648	3	SS5_PROX	SS5_PROX:INTRON	KATNB1	ENSG00000140854.13	ENST00000562592.5:ENST00000379661.8:ENST00000566726.5:ENST00000566611.5:ENST00000569627.1:ENST00000563127.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	125	2	3.02751	4.99204	6.95657	0.0385189	2.19702e-5	0.131324	8.99734e-4
chr20	62888582	62888680	7585195	0	-	0.591837	(0.58,1]	chr20	792848	15	UTR3	UTR3:EXON_MRNA:INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5	protein_coding	protein_coding	protein_coding	protein_coding	5	474	2	4.14968	4.991925	5.83417	7.97356e-4	4.21721e-6	0.0167692	2.80611e-4
chr20	8316862	8316961	7428433	0	+	0.383838	(0.36,0.39]	chr20	773693	101	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	52	2	4.56926	4.99158	5.4139	0.0340874	0.031369	0.127822	0.125059
chr11	72724238	72724337	5070169	0	-	0.59596	(0.58,1]	chr11	493450	20	INTRON	INTRON	ARAP1	ENSG00000186635.15	ENST00000359373.9:ENST00000393609.8	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.81862	4.991575	5.16453	0.0249802	0.0102696	0.10758	0.0678072
chr19	3527438	3527530	7191572	0	+	0.663043	(0.58,1]	chr19	732244	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	47	2	4.81862	4.991575	5.16453	0.0249802	0.0102696	0.10758	0.0678072
chr21	45450226	45450326	7630765	0	+	0.63	(0.58,1]	chr21	797656	444	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.81862	4.991575	5.16453	0.0249802	0.0102696	0.10758	0.0678072
chrX	47571222	47571322	7878266	0	+	0.63	(0.58,1]	chrX	825905	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARAF	ENSG00000078061.14	ENST00000377045.9:ENST00000470206.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.81862	4.991575	5.16453	0.0249802	0.0102696	0.10758	0.0678072
chr2	27338617	27338715	1111828	0	-	0.520408	(0.485,0.523]	chr2	121463	2	INTRON	INTRON	GTF3C2	ENSG00000115207.15	ENST00000359541.6:ENST00000264720.8	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.43249	4.991515	5.55054	0.0322299	0.0215787	0.12988	0.100612
chr3	78757395	78757495	1835077	0	-	0.43	(0.419,0.45]	chr3	188602	101	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	0	59	2	4.19215	4.991515	5.79088	0.0617113	0.022052	0.18013	0.101502
chr5	150503839	150503939	2565048	0	+	0.5	(0.485,0.523]	chr5	254945	52	INTRON	INTRON	NDST1	ENSG00000070614.15	ENST00000522491.1:ENST00000519157.1:ENST00000524161.1:ENST00000523767.5:ENST00000518299.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	4.43249	4.991515	5.55054	0.0322299	0.0215787	0.12988	0.100612
chr5	36951917	36952017	2401507	0	+	0.35	(0.33,0.36]	chr5	239830	744	INTRON	INTRON	NIPBL	ENSG00000164190.19	ENST00000282516.13:ENST00000448238.2:ENST00000652901.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.8729	4.99151	5.11012	0.04702	0.0164782	0.143232	0.091341
chr6	160004712	160004812	3065622	0	+	0.58	(0.523,0.58]	chr6	297914	130	INTRON	INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.58058	4.991415	5.40225	0.0860403	0.00404292	0.181766	0.0371291
chr2	11557467	11557565	720441	0	+	0.418367	(0.39,0.419]	chr2	84105	3	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000628795.2:ENST00000381486.7:ENST00000263834.9:ENST00000389825.7:ENST00000381483.6:ENST00000234142.9:ENST00000470980.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	206	2	2.95415	4.991205	7.02826	0.00562288	0.00245351	0.0462209	0.0312688
chr20	58689640	58689739	7498574	0	+	0.525253	(0.523,0.58]	chr20	781977	103	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1:ENST00000413559.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	1	105	2	4.01555	4.9911449999999995	5.96674	0.0109075	0.00221587	0.0707085	0.0247044
chr12	93433464	93433564	5472824	0	-	0.3	(0.29,0.33]	chr12	538077	87	INTRON	INTRON	UBE2N	ENSG00000177889.10	ENST00000318066.7:ENST00000550657.1:ENST00000549833.1:ENST00000549490.1:ENST00000552442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.95831	4.99113	5.02395	0.0445554	0.0118616	0.140478	0.0746945
chr10	24467784	24467883	4467192	0	+	0.353535	(0.33,0.36]	chr10	427290	6	INTRON	INTRON	KIAA1217	ENSG00000120549.19	ENST00000376462.5:ENST00000376452.7:ENST00000430453.6:ENST00000458595.5:ENST00000376456.8:ENST00000376454.8:ENST00000438429.5:ENST00000696626.1:ENST00000307544.10:ENST00000376451.4:ENST00000396445.5:ENST00000396446.5	protein_coding	protein_coding	protein_coding	protein_coding	1	112	2	3.59568	4.99097	6.38626	0.00741959	0.00621741	0.0553519	0.052147
chr9	137781495	137781593	4266124	0	+	0.489796	(0.485,0.523]	chr9	407438	14	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	107	2	4.22394	4.99089	5.75784	0.0154142	0.00129102	0.0849828	0.0170457
chr2	239080294	239080394	1389473	0	-	0.52	(0.485,0.523]	chr2	148587	110	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000494800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	48	2	4.78426	4.990875	5.19749	0.0660335	0.00672953	0.162385	0.0519464
chr5	80981419	80981519	2468448	0	+	0.49	(0.485,0.523]	chr5	246550	200	INTRON	INTRON	RASGRF2	ENSG00000113319.13	ENST00000265080.9:ENST00000503795.1:ENST00000638442.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.78426	4.990875	5.19749	0.0660335	0.00672953	0.162385	0.0519464
chr6	169698955	169699055	3304884	0	-	0.49	(0.485,0.523]	chr6	319967	35	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1:ENST00000474018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.78426	4.990875	5.19749	0.0660335	0.00672953	0.162385	0.0519464
chr1	225144900	225144976	351640	0	+	0.460526	(0.45,0.485]	chr1	39524	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DNAH14	ENSG00000185842.16	ENST00000445597.6:ENST00000430092.5:ENST00000682510.1:ENST00000439375.6:ENST00000495456.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.64346	4.990635	5.33781	0.0850039	0.0054758	0.181766	0.0454065
chr3	13198926	13199026	1691131	0	-	0.48	(0.45,0.485]	chr3	176566	344	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.64346	4.990635	5.33781	0.0850039	0.0054758	0.181766	0.0454065
chr9	70390600	70390700	4313666	0	-	0.47	(0.45,0.485]	chr9	412398	22	INTRON	INTRON	KLF9	ENSG00000119138.5	ENST00000377126.4	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.64346	4.990635	5.33781	0.0850039	0.0054758	0.181766	0.0454065
chr17	2458696	2458796	6835964	0	-	0.42	(0.419,0.45]	chr17	691367	168	INTRON	INTRON	METTL16	ENSG00000127804.13	ENST00000263092.11:ENST00000571669.6:ENST00000576556.5:ENST00000574752.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	55	2	4.38804	4.990595	5.59315	0.0451818	0.029494	0.154539	0.116079
chr16	72843952	72844052	6625842	0	-	0.49	(0.485,0.523]	chr16	663523	137	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2:ENST00000397992.5:ENST00000268489.10:ENST00000563625.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	106	2	3.80685	4.9905550000000005	6.17426	0.00754939	0.00388927	0.0578091	0.0363508
chr3	24482122	24482222	1716349	0	-	0.3	(0.29,0.33]	chr3	178018	228	INTRON	INTRON	THRB	ENSG00000151090.20	ENST00000646209.2:ENST00000396671.7:ENST00000356447.9:ENST00000646432.1:ENST00000643772.1:ENST00000645139.1:ENST00000642307.1:ENST00000644321.1:ENST00000646966.1:ENST00000416420.5:ENST00000413780.5:ENST00000447875.5:ENST00000453729.6:ENST00000431815.5:ENST00000447414.5:ENST00000428492.5:ENST00000418247.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.58769	4.990515	5.39334	0.0806047	0.00448059	0.177452	0.0398484
chrX	153643701	153643800	7960799	0	+	0.626263	(0.58,1]	chrX	833164	7	INTRON	INTRON	DUSP9	ENSG00000130829.18	ENST00000477033.1:ENST00000370167.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	377	2	4.97509	4.99047	5.00585	2.62614e-4	7.40898e-5	0.00919181	0.00219184
chr2	233204771	233204856	1058688	0	+	0.494118	(0.485,0.523]	chr2	115197	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000417661.1:ENST00000491070.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.96361	4.9904	5.01719	0.0480495	0.0112713	0.144601	0.071709
chr5	74822878	74822978	2692285	0	-	0.51	(0.485,0.523]	chr5	265977	85	INTRON	INTRON	FAM169A	ENSG00000198780.13	ENST00000389156.9:ENST00000510496.5:ENST00000687041.1:ENST00000514215.5:ENST00000510609.5:ENST00000513277.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.96361	4.9904	5.01719	0.0480495	0.0112713	0.144601	0.071709
chr1	17673486	17673586	54946	0	+	0.54	(0.523,0.58]	chr1	5603	85	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	176	2	3.27704	4.9903	6.70356	0.0156954	1.18392e-4	0.0852609	0.00311099
chr10	103715384	103715483	4757254	0	-	0.565657	(0.523,0.58]	chr10	454791	219	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.7629	4.9900850000000005	5.21727	0.0361597	0.0167014	0.127853	0.0917029
chr11	70873321	70873421	5063020	0	-	0.53	(0.523,0.58]	chr11	492728	3	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000645599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.7629	4.9900850000000005	5.21727	0.0361597	0.0167014	0.127853	0.0917029
chr17	2931363	2931463	6669157	0	+	0.58	(0.523,0.58]	chr17	668035	256	INTRON	INTRON	RAP1GAP2	ENSG00000132359.15	ENST00000637138.1:ENST00000540393.6:ENST00000254695.13:ENST00000366401.8:ENST00000542807.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.7629	4.9900850000000005	5.21727	0.0361597	0.0167014	0.127853	0.0917029
chr2	10190903	10191002	718210	0	+	0.555556	(0.523,0.58]	chr2	84002	348	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	49	2	4.7629	4.9900850000000005	5.21727	0.0361597	0.0167014	0.127853	0.0917029
chr3	197766438	197766538	1668469	0	+	0.54	(0.523,0.58]	chr3	174974	24	INTRON	INTRON	FYTTD1	ENSG00000122068.13	ENST00000428738.5:ENST00000494309.5:ENST00000415708.6:ENST00000412924.5:ENST00000241502.9:ENST00000418169.5:ENST00000426031.5:ENST00000424384.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.7629	4.9900850000000005	5.21727	0.0361597	0.0167014	0.127853	0.0917029
chr6	154794320	154794414	3044725	0	+	0.37234	(0.36,0.39]	chr6	296650	10	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000367178.8	protein_coding	protein_coding	protein_coding	protein_coding	1	111	2	4.03367	4.990025	5.9463800000000004	0.0151971	0.00272235	0.084474	0.028553
chr1	1718340	1718437	382891	0	-	0.505155	(0.485,0.523]	chr1	43594	15	INTRON	INTRON	CDK11A:ENSG00000268575	ENSG00000008128.23:ENSG00000268575.1	ENST00000404249.8:ENST00000356200.7:ENST00000598846.1:ENST00000357760.6:ENST00000358779.9:ENST00000378633.5:ENST00000460465.5:ENST00000509982.5:ENST00000378638.6:ENST00000356937.7:ENST00000479362.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	0	49	2	4.581	4.989845000000001	5.39869	0.085711	0.00421243	0.181766	0.0380601
chr11	70534630	70534730	5059619	0	-	0.5	(0.485,0.523]	chr11	492663	313	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	4.581	4.989845000000001	5.39869	0.085711	0.00421243	0.181766	0.0380601
chr12	421716	421816	5148402	0	+	0.5	(0.485,0.523]	chr12	500517	27	INTRON	INTRON	CCDC77	ENSG00000120647.10	ENST00000540180.5:ENST00000422000.5:ENST00000543504.5:ENST00000540344.5:ENST00000412006.6:ENST00000239830.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.581	4.989845000000001	5.39869	0.085711	0.00421243	0.181766	0.0380601
chr5	122801568	122801668	2521243	0	+	0.37	(0.36,0.39]	chr5	250324	3	SS3_PROX	SS3_PROX:INTRON	SNX2	ENSG00000205302.7	ENST00000512394.5:ENST00000379516.7:ENST00000505934.5:ENST00000505854.5:ENST00000514949.1:ENST00000510372.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	4.64834	4.9897	5.33106	0.0383628	0.0272056	0.131324	0.119337
chr16	85589230	85589330	6518965	0	+	0.64	(0.58,1]	chr16	646396	325	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	2	246	2	4.90058	4.989585	5.07859	8.93566e-4	5.81077e-5	0.017813	0.00182855
chr9	114074790	114074859	4373777	0	-	0.550725	(0.523,0.58]	chr9	418050	3	SS5_PROX	SS5_PROX:INTRON	AMBP	ENSG00000106927.12	ENST00000265132.8:ENST00000540645.5:ENST00000466610.6:ENST00000603230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	116	2	3.31719	4.988815000000001	6.66044	0.0124719	0.00312705	0.0765738	0.0356998
chr8	83928924	83929023	3849491	0	+	0.474747	(0.45,0.485]	chr8	369451	157	INTRON	INTRON	ENSG00000254202	ENSG00000254202.2	ENST00000523678.1	lncRNA	lncRNA	lncRNA	lncRNA	0	51	2	4.59225	4.98864	5.38503	0.0308908	0.0259502	0.119556	0.116361
chr9	133887499	133887599	4429275	0	-	0.46	(0.45,0.485]	chr9	423310	257	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.59225	4.98864	5.38503	0.0308908	0.0259502	0.119556	0.116361
chr15	98870519	98870619	6195553	0	+	0.49	(0.485,0.523]	chr15	609677	459	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1:ENST00000557938.5:ENST00000560186.5:ENST00000560277.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	49	2	4.75939	4.98854	5.21769	0.0359739	0.0172254	0.127853	0.0923809
chr1	214460244	214460343	659017	0	-	0.363636	(0.36,0.39]	chr1	77693	79	INTRON	INTRON	PTPN14	ENSG00000152104.12	ENST00000366956.10:ENST00000543945.5	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.92735	4.98842	5.04949	0.0563927	0.0160072	0.154188	0.0894586
chr7	154975495	154975595	3738157	0	-	0.37	(0.36,0.39]	chr7	359357	4	SS5_PROX	SS5_PROX:INTRON	PAXIP1	ENSG00000157212.19	ENST00000457196.5:ENST00000404141.6:ENST00000397192.5:ENST00000473219.5:ENST00000475066.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.92735	4.98842	5.04949	0.0563927	0.0160072	0.154188	0.0894586
chr6	99413423	99413516	3208655	0	-	0.44086	(0.419,0.45]	chr6	311556	3	INTRON	INTRON	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5:ENST00000478777.5:ENST00000492294.5:ENST00000498075.1:ENST00000466057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	141	2	3.79113	4.988265	6.1854	0.0174043	0.00100635	0.0901374	0.0142602
chr3	17496679	17496779	1702332	0	-	0.33	(0.29,0.33]	chr3	177733	678	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	126	2	3.50827	4.988185	6.4681	0.0208279	2.6858e-4	0.0990379	0.00560336
chr21	44811095	44811194	7678244	0	-	0.484848	(0.45,0.485]	chr21	802721	16	INTRON	INTRON	SUMO3	ENSG00000184900.16	ENST00000479153.1:ENST00000411651.6:ENST00000332859.11:ENST00000397898.7:ENST00000397893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	130	2	3.51602	4.988105	6.46019	0.0229356	3.07362e-4	0.102982	0.00618726
chr21	41830125	41830225	7673623	0	-	0.4	(0.39,0.419]	chr21	801978	14	INTRON	INTRON	PRDM15	ENSG00000141956.14	ENST00000422911.6:ENST00000441787.5:ENST00000449395.6:ENST00000398548.6:ENST00000447016.6:ENST00000269844.5:ENST00000491486.5:ENST00000489661.5:ENST00000496124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.76257	4.988005	5.21344	0.0822354	0.00893514	0.179396	0.0620271
chr19	58327713	58327812	7301073	0	+	0.444444	(0.419,0.45]	chr19	752038	2	INTRON	INTRON	ZSCAN22	ENSG00000182318.6	ENST00000329665.5	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.62273	4.98795	5.35317	0.103601	0.00714797	0.197541	0.0541241
chr8	47492931	47493031	3814555	0	+	0.44	(0.419,0.45]	chr8	367313	520	INTRON	INTRON	SPIDR	ENSG00000164808.17	ENST00000541342.2:ENST00000518074.5:ENST00000297423.9:ENST00000521550.5:ENST00000524126.5:ENST00000524141.5:ENST00000519661.5:ENST00000522117.5:ENST00000524033.5:ENST00000524006.5:ENST00000521214.5:ENST00000519401.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	138	2	3.61678	4.987875	6.35897	0.0229694	6.44911e-4	0.102982	0.0104285
chr1	1026145	1026245	976	0	+	0.6	(0.58,1]	chr1	166	33	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.58025	4.987855	5.39546	0.0172566	0.0168207	0.0923809	0.0884836
chr19	1160019	1160119	7305652	0	-	0.74	(0.58,1]	chr19	753054	50	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5:ENST00000587655.2	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.58025	4.987855	5.39546	0.0172566	0.0168207	0.0923809	0.0884836
chr9	134367179	134367279	4261095	0	+	0.64	(0.58,1]	chr9	406311	402	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	4.58025	4.987855	5.39546	0.0172566	0.0168207	0.0923809	0.0884836
chr17	81136899	81136999	6982871	0	-	0.63	(0.58,1]	chr17	713268	20	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	46	2	4.88945	4.987395	5.08534	0.0388928	0.00549379	0.131324	0.0454065
chr16	85434417	85434517	6517415	0	+	0.46	(0.45,0.485]	chr16	646391	751	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.32491	4.987064999999999	5.64922	0.0418883	0.020599	0.149021	0.0982852
chr2	74438451	74438551	1193309	0	-	0.48	(0.45,0.485]	chr2	129604	54	INTRON	INTRON	RTKN	ENSG00000114993.17	ENST00000272430.10:ENST00000305557.9:ENST00000233330.6:ENST00000479256.1:ENST00000472518.1:ENST00000464094.2:ENST00000460968.1:ENST00000484453.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	52	2	4.50852	4.98705	5.46558	0.0302873	0.0273644	0.126768	0.112372
chr11	70886206	70886306	5063149	0	-	0.44	(0.419,0.45]	chr11	492728	132	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000645599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.78575	4.9868950000000005	5.18804	0.051668	0.0224633	0.148503	0.108193
chr5	108964345	108964445	2501040	0	+	0.43	(0.419,0.45]	chr5	248777	46	INTRON	INTRON	FER	ENSG00000151422.14	ENST00000281092.9:ENST00000504143.6:ENST00000438717.6:ENST00000618353.1:ENST00000505323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	50	2	4.78575	4.9868950000000005	5.18804	0.051668	0.0224633	0.148503	0.108193
chr7	24947789	24947889	3555661	0	-	0.44	(0.419,0.45]	chr7	343511	298	INTRON	INTRON	OSBPL3	ENSG00000070882.13	ENST00000313367.7:ENST00000415952.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.78575	4.9868950000000005	5.18804	0.051668	0.0224633	0.148503	0.108193
chr18	77091604	77091703	7181233	0	-	0.50505	(0.485,0.523]	chr18	730167	41	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000580402.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1:ENST00000583798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	133	2	3.93982	4.986890000000001	6.03396	0.0102856	8.35707e-4	0.0684871	0.012554
chr19	6692423	6692523	7322666	0	-	0.51	(0.485,0.523]	chr19	756436	1	SS5_PROX	SS5_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000695653.1:ENST00000695654.1:ENST00000695692.1:ENST00000695652.1:ENST00000695655.1:ENST00000598805.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	141	2	3.59716	4.986795	6.37643	0.0052506	0.00212445	0.0476984	0.0240152
chr22	20986675	20986772	7689378	0	+	0.28866000000000003	[0,0.29]	chr22	804636	9	EXON_MRNA	EXON_MRNA:INTRON	LZTR1	ENSG00000099949.21	ENST00000414985.5:ENST00000646124.2:ENST00000493460.2:ENST00000443265.5:ENST00000645935.1:ENST00000644435.1:ENST00000642151.1:ENST00000480895.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.75627	4.9866399999999995	5.21701	0.050276	0.00547146	0.148161	0.0454065
chr8	129972692	129972792	4079222	0	-	0.55	(0.523,0.58]	chr8	387962	13	INTRON	INTRON	CYRIB	ENSG00000153310.21	ENST00000694912.1:ENST00000523288.5:ENST00000519110.5:ENST00000401979.6:ENST00000523509.5:ENST00000517654.5:ENST00000518879.5:ENST00000522702.5:ENST00000521223.5:ENST00000518283.5:ENST00000523993.5:ENST00000519020.5:ENST00000518167.5:ENST00000522361.1:ENST00000523514.1:ENST00000518285.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	48	2	4.71922	4.986625	5.25403	0.0721601	0.00573579	0.168159	0.0467736
chr1	22069020	22069120	58830	0	+	0.42	(0.419,0.45]	chr1	6111	4	SS3_PROX	SS3_PROX:INTRON	CDC42	ENSG00000070831.18	ENST00000344548.8:ENST00000400259.5:ENST00000667384.2:ENST00000411827.2:ENST00000695858.1:ENST00000695857.1:ENST00000315554.14:ENST00000695859.1:ENST00000498236.1:ENST00000656825.1:ENST00000651171.1:ENST00000652582.1:ENST00000695860.1:ENST00000695796.1:ENST00000695797.1:ENST00000662562.2:ENST00000695798.1:ENST00000695799.1:ENST00000695800.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.87598	4.98658	5.09718	0.0768574	0.012235	0.174882	0.0757339
chr14	63430288	63430388	5991839	0	-	0.42	(0.419,0.45]	chr14	587797	78	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556150.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.87598	4.98658	5.09718	0.0768574	0.012235	0.174882	0.0757339
chr3	97790015	97790114	1514828	0	+	0.444444	(0.419,0.45]	chr3	161377	15	INTRON	INTRON	ARL6	ENSG00000113966.10	ENST00000493990.5:ENST00000335979.6:ENST00000394206.5:ENST00000463745.6:ENST00000496713.1:ENST00000631834.1:ENST00000476753.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	49	2	4.87598	4.98658	5.09718	0.0768574	0.012235	0.174882	0.0757339
chrX	155533316	155533416	8127175	0	-	0.45	(0.419,0.45]	chrX	847254	83	INTRON	INTRON	TMLHE	ENSG00000185973.12	ENST00000334398.8:ENST00000675642.1:ENST00000369439.4:ENST00000487422.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.87598	4.98658	5.09718	0.0768574	0.012235	0.174882	0.0757339
chr4	3323842	3323942	2004671	0	+	0.44	(0.419,0.45]	chr4	204655	54	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000502947.1:ENST00000511805.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.9329	4.986470000000001	5.04004	0.0716557	0.0137308	0.168159	0.0814223
chr11	2698294	2698394	4972294	0	-	0.43	(0.419,0.45]	chr11	481197	901	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	1	112	2	3.95434	4.98634	6.01834	0.015582500000000001	0.0035117	0.0849828	0.0339498
chr14	70930083	70930183	5873436	0	+	0.46	(0.45,0.485]	chr14	573412	217	INTRON	INTRON	PCNX1	ENSG00000100731.16	ENST00000554879.5:ENST00000304743.7:ENST00000554292.1:ENST00000439984.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	107	2	4.01376	4.9861	5.95844	0.0124835	0.0024644	0.0761905	0.0265925
chr20	8492738	8492838	7430195	0	+	0.29	[0,0.29]	chr20	773698	1207	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.91809	4.986090000000001	5.05409	0.0318802	0.0107911	0.12158	0.0704469
chr1	29288888	29288986	78916	0	+	0.602041	(0.58,1]	chr1	8983	37	INTRON	INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2:ENST00000415600.6:ENST00000531385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	46	2	4.94882	4.98598	5.02314	0.0354433	0.00638322	0.127188	0.0501889
chr1	111727831	111727931	561677	0	-	0.61	(0.58,1]	chr1	64442	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	INKA2	ENSG00000197852.12	ENST00000527570.1:ENST00000357260.6:ENST00000534365.1:ENST00000444059.2:ENST00000527621.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.94882	4.98598	5.02314	0.0354433	0.00638322	0.127188	0.0501889
chr12	132543719	132543818	5353053	0	+	0.59596	(0.58,1]	chr12	523670	154	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.94882	4.98598	5.02314	0.0354433	0.00638322	0.127188	0.0501889
chr16	4373988	4374087	6377882	0	+	0.606061	(0.58,1]	chr16	630571	16	INTRON	INTRON	VASN	ENSG00000168140.5	ENST00000304735.4	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.94882	4.98598	5.02314	0.0354433	0.00638322	0.127188	0.0501889
chr4	6300156	6300256	2010603	0	+	0.59	(0.58,1]	chr4	205142	1	SS3_PROX	SS3_PROX:INTRON	WFS1	ENSG00000109501.15	ENST00000673991.1:ENST00000503569.5:ENST00000226760.5:ENST00000682275.1:ENST00000506362.2:ENST00000684087.1:ENST00000683395.1:ENST00000673642.1:ENST00000507765.1:ENST00000513395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.94882	4.98598	5.02314	0.0354433	0.00638322	0.127188	0.0501889
chr8	127876023	127876123	3918607	0	+	0.6	(0.58,1]	chr8	374193	156	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000521122.2:ENST00000520913.2:ENST00000519481.6:ENST00000651568.1:ENST00000669082.1:ENST00000665166.1:ENST00000656948.1:ENST00000671088.1:ENST00000664924.1:ENST00000670204.1:ENST00000652695.1	lncRNA	lncRNA	lncRNA	lncRNA	0	46	2	4.94882	4.98598	5.02314	0.0354433	0.00638322	0.127188	0.0501889
chr1	17666393	17666493	54875	0	+	0.61	(0.58,1]	chr1	5603	14	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	4.66416	4.9858150000000006	5.30747	0.0196049	0.0144381	0.0955413	0.0833845
chr14	23512822	23512873	5757078	0	+	0.588235	(0.58,1]	chr14	564955	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA	ZFHX2-AS1	ENSG00000157306.14	ENST00000556354.5:ENST00000556613.1:ENST00000553985.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	48	2	4.66416	4.9858150000000006	5.30747	0.0196049	0.0144381	0.0955413	0.0833845
chr2	238351552	238351648	1073444	0	+	0.645833	(0.58,1]	chr2	116386	18	INTRON	INTRON	TRAF3IP1	ENSG00000204104.12	ENST00000391993.7:ENST00000373327.5:ENST00000462122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	4.66416	4.9858150000000006	5.30747	0.0196049	0.0144381	0.0955413	0.0833845
chr4	715040	715140	1993778	0	+	0.6	(0.58,1]	chr4	203088	87	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	4.66416	4.9858150000000006	5.30747	0.0196049	0.0144381	0.0955413	0.0833845
chr4	139666177	139666277	2134016	0	+	0.61	(0.58,1]	chr4	216776	1	SS5_PROX	SS5_PROX:INTRON	MGST2	ENSG00000085871.9	ENST00000616265.4:ENST00000265498.6:ENST00000506797.5:ENST00000515137.5:ENST00000502587.1:ENST00000503816.1:ENST00000515067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	150	2	2.82468	4.985725	7.14677	0.0123866	4.73371e-4	0.0765738	0.0125708
chr20	5817433	5817533	7424684	0	+	0.48	(0.45,0.485]	chr20	773468	440	INTRON	INTRON	SHLD1	ENSG00000171984.15	ENST00000303142.11:ENST00000445603.1:ENST00000442185.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.67139	4.9855599999999995	5.29973	0.035042	0.0223378	0.12704	0.108193
chr2	239372101	239372201	1392433	0	-	0.6	(0.58,1]	chr2	148759	188	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	97	2	4.01623	4.985385	5.95454	0.0059453	0.00161478	0.0506158	0.0199131
chr20	51600710	51600810	7577681	0	-	0.37	(0.36,0.39]	chr20	791738	43	UTR3	UTR3:EXON_MRNA	ATP9A	ENSG00000054793.14	ENST00000338821.6:ENST00000311637.9	protein_coding	protein_coding	protein_coding	protein_coding	1	136	2	2.95428	4.98536	7.01644	0.0305895	0.0024343	0.126768	0.0311222
chr16	89435919	89436019	6661193	0	-	0.57	(0.523,0.58]	chr16	666753	42	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	129	2	3.2478	4.985144999999999	6.72249	0.0335771	1.11891e-4	0.124319	0.00298349
chr19	46976792	46976892	7275341	0	+	0.56	(0.523,0.58]	chr19	747275	390	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	107	2	3.65844	4.985075	6.31171	0.00594629	0.00554418	0.0506158	0.0456911
chr1	9294694	9294794	19601	0	+	0.51	(0.485,0.523]	chr1	2204	1	SS5_PROX	SS5_PROX:INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11:ENST00000450402.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.71964	4.98506	5.25048	0.0718646	0.0059614	0.168159	0.0479866
chr16	23466692	23466792	6568565	0	-	0.51	(0.485,0.523]	chr16	655371	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000567339.1:ENST00000568922.1:ENST00000566685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	48	2	4.71964	4.98506	5.25048	0.0718646	0.0059614	0.168159	0.0479866
chr10	103838215	103838315	4758487	0	-	0.61	(0.58,1]	chr10	454819	365	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.49116	4.984775	5.47839	0.0207449	0.0145198	0.102713	0.0823104
chr15	67174102	67174202	6140172	0	+	0.6	(0.58,1]	chr15	603992	31	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000327367.9:ENST00000679624.1:ENST00000540846.6:ENST00000558894.5:ENST00000439724.7:ENST00000681239.1:ENST00000537194.6:ENST00000558827.1:ENST00000558428.5	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.49116	4.984775	5.47839	0.0207449	0.0145198	0.102713	0.0823104
chr4	721916	722016	1993847	0	+	0.66	(0.58,1]	chr4	203088	156	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	50	2	4.49116	4.984775	5.47839	0.0207449	0.0145198	0.102713	0.0823104
chr7	75638023	75638123	3607483	0	-	0.62	(0.58,1]	chr7	348440	263	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.49116	4.984775	5.47839	0.0207449	0.0145198	0.102713	0.0823104
chr13	113537566	113537666	5658657	0	+	0.37	(0.36,0.39]	chr13	555722	24	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.56076	4.984525	5.40829	0.103289	0.00581205	0.197541	0.0472624
chr14	39815291	39815391	5797271	0	+	0.38	(0.36,0.39]	chr14	567746	1028	INTRON	INTRON	ENSG00000258526	ENSG00000258526.8	ENST00000652126.1:ENST00000651829.1:ENST00000650911.1	lncRNA	lncRNA	lncRNA	lncRNA	0	50	2	4.56076	4.984525	5.40829	0.103289	0.00581205	0.197541	0.0472624
chr16	72095838	72095938	6491367	0	+	0.46	(0.45,0.485]	chr16	645123	3	SS3_PROX	SS3_PROX:INTRON	DHX38	ENSG00000140829.12	ENST00000566794.5:ENST00000268482.8:ENST00000579387.5:ENST00000566489.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.89685	4.984525	5.0722	0.0614781	0.00988295	0.158506	0.0664239
chr22	24112074	24112173	7695486	0	+	0.363636	(0.36,0.39]	chr22	805529	89	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	50	2	4.56076	4.984525	5.40829	0.103289	0.00581205	0.197541	0.0472624
chr9	4713596	4713694	4269906	0	-	0.367347	(0.36,0.39]	chr9	407900	1	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.56076	4.984525	5.40829	0.103289	0.00581205	0.197541	0.0472624
chr6	158232503	158232603	3060840	0	+	0.71	(0.58,1]	chr6	297571	2	SS5_PROX	SS5_PROX:INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	116	2	3.73069	4.984505	6.23832	0.0106925	2.24165e-4	0.0701355	0.00490779
chr17	73006615	73006715	6968360	0	-	0.43	(0.419,0.45]	chr17	710532	138	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5:ENST00000582179.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	4.81671	4.984425	5.15214	0.08258	0.0109324	0.179396	0.0706366
chr2	161217437	161217537	938681	0	+	0.42	(0.419,0.45]	chr2	103669	6	INTRON	INTRON	TANK	ENSG00000136560.14	ENST00000259075.6:ENST00000432002.5:ENST00000429217.5:ENST00000406287.5:ENST00000402568.5:ENST00000457887.5:ENST00000392749.7:ENST00000432692.6:ENST00000405852.5:ENST00000456358.5:ENST00000468831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	4.81671	4.984425	5.15214	0.08258	0.0109324	0.179396	0.0706366
chr9	35309103	35309199	4143419	0	+	0.447917	(0.419,0.45]	chr9	394000	3	INTRON	INTRON	UNC13B	ENSG00000198722.15	ENST00000617908.4:ENST00000619578.4:ENST00000396787.5:ENST00000635942.2:ENST00000378495.7:ENST00000634487.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.81671	4.984425	5.15214	0.08258	0.0109324	0.179396	0.0706366
chrX	6916134	6916234	7974342	0	-	0.45	(0.419,0.45]	chrX	834743	1947	INTRON	INTRON	PUDP	ENSG00000130021.15	ENST00000655425.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	49	2	4.81671	4.984425	5.15214	0.08258	0.0109324	0.179396	0.0706366
chr1	89853853	89853953	181029	0	+	0.51	(0.485,0.523]	chr1	19585	68	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	1	127	2	3.47307	4.98435	6.49563	0.0231672	2.29841e-4	0.103245	0.00498593
chr2	45509731	45509831	1138478	0	-	0.5	(0.485,0.523]	chr2	124602	210	INTRON	INTRON	SRBD1	ENSG00000068784.13	ENST00000263736.5:ENST00000475073.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.8987	4.984344999999999	5.06999	0.0445854	0.0129327	0.140478	0.0778105
chr5	162868708	162868808	2802679	0	-	0.49	(0.485,0.523]	chr5	274985	724	INTRON	INTRON	ENSG00000254186	ENSG00000254186.3	ENST00000646617.1:ENST00000660514.1	lncRNA	lncRNA	lncRNA	lncRNA	0	48	2	4.8987	4.984344999999999	5.06999	0.0445854	0.0129327	0.140478	0.0778105
chr6	32974865	32974920	2897719	0	+	0.509091	(0.485,0.523]	chr6	283729	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRD2	ENSG00000204256.14	ENST00000374825.9:ENST00000469132.2:ENST00000679179.1:ENST00000678778.1:ENST00000449085.4:ENST00000677331.1:ENST00000456339.5:ENST00000678250.1:ENST00000677085.1:ENST00000374831.8:ENST00000495733.5:ENST00000482914.5:ENST00000679099.1:ENST00000464592.6:ENST00000607833.5:ENST00000395287.5:ENST00000449025.5:ENST00000463639.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	4.8987	4.984344999999999	5.06999	0.0445854	0.0129327	0.140478	0.0778105
chr7	47376115	47376215	3587553	0	-	0.49	(0.485,0.523]	chr7	346036	61	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.8987	4.984344999999999	5.06999	0.0445854	0.0129327	0.140478	0.0778105
chr22	29828100	29828198	7784838	0	-	0.5	(0.485,0.523]	chr22	816450	1	INTRON	INTRON	ASCC2	ENSG00000100325.15	ENST00000542393.5:ENST00000307790.8:ENST00000458594.5:ENST00000397771.6:ENST00000449900.6:ENST00000431535.5:ENST00000495967.5:ENST00000412689.5:ENST00000465667.6:ENST00000495681.5:ENST00000462454.1:ENST00000453160.5:ENST00000460313.1:ENST00000454854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	127	2	3.54037	4.9843	6.42823	0.0206875	2.78987e-4	0.0985914	0.00577243
chr10	69252946	69253046	4502820	0	+	0.43	(0.419,0.45]	chr10	430755	19	INTRON	INTRON	HKDC1	ENSG00000156510.13	ENST00000354624.6	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.98054	4.984105	4.98767	0.0669167	0.0154548	0.16272	0.0869771
chr14	30899141	30899241	5950706	0	-	0.42	(0.419,0.45]	chr14	583023	30	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.98054	4.984105	4.98767	0.0669167	0.0154548	0.16272	0.0869771
chr16	3879231	3879331	6539929	0	-	0.43	(0.419,0.45]	chr16	650426	279	INTRON	INTRON	CREBBP	ENSG00000005339.15	ENST00000262367.10:ENST00000382070.7	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.98054	4.984105	4.98767	0.0669167	0.0154548	0.16272	0.0869771
chr16	72827085	72827185	6625672	0	-	0.43	(0.419,0.45]	chr16	663517	147	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2:ENST00000397992.5:ENST00000268489.10	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.98054	4.984105	4.98767	0.0669167	0.0154548	0.16272	0.0869771
chr3	51665400	51665499	1472194	0	+	0.424242	(0.419,0.45]	chr3	157989	21	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.98054	4.984105	4.98767	0.0669167	0.0154548	0.16272	0.0869771
chr16	81678628	81678728	6510097	0	+	0.72	(0.58,1]	chr16	645977	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	4	413	2	4.36037	4.983755	5.60714	6.63144e-4	9.43422e-6	0.0151313	4.93382e-4
chr7	143385132	143385228	3510756	0	+	0.520833	(0.485,0.523]	chr7	338486	5	INTRON	INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	127	2	3.44992	4.98367	6.51742	0.0240794	2.15808e-4	0.106575	0.00477041
chr22	33914899	33914999	7802818	0	-	0.47	(0.45,0.485]	chr22	817661	258	INTRON	INTRON	LARGE1	ENSG00000133424.22	ENST00000397394.8:ENST00000413114.6:ENST00000676070.1:ENST00000674543.1:ENST00000676370.1:ENST00000354992.7:ENST00000402320.6:ENST00000674789.1:ENST00000675277.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.83755	4.983465000000001	5.12938	0.06646	0.00873194	0.162385	0.0612699
chr3	12965994	12966093	1688789	0	-	0.474747	(0.45,0.485]	chr3	176520	50	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.83755	4.983465000000001	5.12938	0.06646	0.00873194	0.162385	0.0612699
chr2	239341587	239341687	1392126	0	-	0.38	(0.36,0.39]	chr2	148752	171	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	50	2	4.72331	4.98324	5.24317	0.0433841	0.0236929	0.138813	0.111208
chr16	73037871	73037971	6627788	0	-	0.48	(0.45,0.485]	chr16	663549	319	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2:ENST00000397992.5:ENST00000268489.10	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.9538	4.9832350000000005	5.01267	0.0569772	0.011221	0.154343	0.071709
chr7	23605378	23605477	3329512	0	+	0.353535	(0.33,0.36]	chr7	322407	7	INTRON	INTRON	CCDC126	ENSG00000169193.12	ENST00000307471.8:ENST00000409765.5:ENST00000448353.5:ENST00000485233.1:ENST00000472407.5:ENST00000410069.1:ENST00000486109.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	49	2	4.64131	4.98311	5.32491	0.0867669	0.00634179	0.182221	0.0501889
chr6	158019192	158019291	3059684	0	+	0.50505	(0.485,0.523]	chr6	297373	10	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	1	105	2	3.86607	4.983055	6.10004	0.00860355	0.00334297	0.0623467	0.0327065
chr1	228141929	228142029	358003	0	+	0.59	(0.58,1]	chr1	40400	1	SS5_PROX	SS5_PROX:INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.76284	4.982535	5.20223	0.0471737	0.00411607	0.143232	0.0374453
chr16	81616204	81616303	6509458	0	+	0.616162	(0.58,1]	chr16	645921	53	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.76284	4.982535	5.20223	0.0471737	0.00411607	0.143232	0.0374453
chr17	82909807	82909903	6819993	0	+	0.666667	(0.58,1]	chr17	689431	1	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.76284	4.982535	5.20223	0.0471737	0.00411607	0.143232	0.0374453
chr21	43957138	43957238	7625355	0	+	0.65	(0.58,1]	chr21	796924	15	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000448845.1:ENST00000422850.5:ENST00000546158.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.76284	4.982535	5.20223	0.0471737	0.00411607	0.143232	0.0374453
chr9	129339217	129339317	4250329	0	+	0.59	(0.58,1]	chr9	404661	3	SS5_PROX	SS5_PROX:INTRON	LINC01503	ENSG00000233901.7	ENST00000427109.2:ENST00000654735.1:ENST00000654190.1:ENST00000657886.1:ENST00000661745.1:ENST00000436710.6:ENST00000660635.1:ENST00000657651.1:ENST00000665063.2:ENST00000667257.1:ENST00000690929.1:ENST00000654148.1:ENST00000444125.3:ENST00000666671.1:ENST00000660036.1:ENST00000657393.1:ENST00000659864.1	lncRNA	lncRNA	lncRNA	lncRNA	0	46	2	4.76284	4.982535	5.20223	0.0471737	0.00411607	0.143232	0.0374453
chr2	218583086	218583186	1034173	0	+	0.42	(0.419,0.45]	chr2	112348	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CNOT9	ENSG00000144580.14	ENST00000627282.2:ENST00000542068.5:ENST00000273064.11:ENST00000432877.5:ENST00000295701.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	137	2	3.56008	4.982515	6.40495	0.0250979	5.72149e-4	0.107672	0.00960229
chr19	58208195	58208293	7300142	0	+	0.520408	(0.485,0.523]	chr19	751901	2	EXON_MRNA	EXON_MRNA:INTRON	ZNF274	ENSG00000171606.18	ENST00000424679.6:ENST00000617501.5:ENST00000621145.4:ENST00000345813.7:ENST00000619307.4:ENST00000615675.4:ENST00000326804.8:ENST00000610905.4:ENST00000595146.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	171	2	3.50665	4.98229	6.45793	0.00452302	0.00146526	0.0436138	0.0185589
chr9	4714676	4714774	4269917	0	-	0.377551	(0.36,0.39]	chr9	407900	12	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.69932	4.982200000000001	5.26508	0.0877431	0.00795848	0.183437	0.0578938
chr2	11615875	11615960	721058	0	+	0.6	(0.58,1]	chr2	84230	2	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000234142.9:ENST00000396123.2:ENST00000472040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.95814	4.9819949999999995	5.00585	0.0323732	0.0074469	0.121593	0.0553519
chr20	33660986	33661077	7546032	0	-	0.604396	(0.58,1]	chr20	787635	2	INTRON	INTRON	NECAB3	ENSG00000125967.17	ENST00000375238.8:ENST00000246190.11:ENST00000488489.5:ENST00000606525.5:ENST00000483813.5:ENST00000485399.5:ENST00000485976.5:ENST00000478237.5:ENST00000494174.5:ENST00000463246.5:ENST00000480994.5:ENST00000606690.5:ENST00000439478.5:ENST00000607805.5:ENST00000498353.5:ENST00000493590.1:ENST00000606106.1:ENST00000606699.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.95814	4.9819949999999995	5.00585	0.0323732	0.0074469	0.121593	0.0553519
chr22	21675914	21676013	7690783	0	+	0.59596	(0.58,1]	chr22	804829	4	INTRON	INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000458567.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000679586.1:ENST00000680094.1:ENST00000484439.5:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000680022.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.95814	4.9819949999999995	5.00585	0.0323732	0.0074469	0.121593	0.0553519
chr4	716336	716435	1993791	0	+	0.616162	(0.58,1]	chr4	203088	100	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.95814	4.9819949999999995	5.00585	0.0323732	0.0074469	0.121593	0.0553519
chr7	221049	221149	3305865	0	+	0.68	(0.58,1]	chr7	320161	117	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.95814	4.9819949999999995	5.00585	0.0323732	0.0074469	0.121593	0.0553519
chr8	729245	729345	3933023	0	-	0.64	(0.58,1]	chr8	376060	129	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.95814	4.9819949999999995	5.00585	0.0323732	0.0074469	0.121593	0.0553519
chr16	81625194	81625294	6509549	0	+	0.66	(0.58,1]	chr16	645926	31	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	1	99	2	3.72143	4.98194	6.24245	0.00366718	0.00334087	0.0368376	0.0346803
chr13	33262460	33262560	5685222	0	-	0.37	(0.36,0.39]	chr13	558196	566	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	110	2	3.90975	4.98168	6.05361	0.0127951	0.00370144	0.0769416	0.0349217
chr19	946708	946808	7185313	0	+	0.43	(0.419,0.45]	chr19	730741	136	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	116	2	3.4957	4.9812899999999996	6.46688	0.0102234	0.00757951	0.0678072	0.0579104
chr11	70593829	70593929	5060211	0	-	0.41	(0.39,0.419]	chr11	492663	905	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	4.69798	4.9812449999999995	5.26451	0.088901	0.00800901	0.183874	0.0580954
chr12	110639484	110639583	5328141	0	+	0.414141	(0.39,0.419]	chr12	519584	26	INTRON	INTRON	TCTN1	ENSG00000204852.17	ENST00000551590.5:ENST00000490514.5:ENST00000397656.8:ENST00000495659.6:ENST00000397655.7:ENST00000549123.6:ENST00000552038.6:ENST00000377654.5:ENST00000681851.1:ENST00000547461.3:ENST00000614115.5:ENST00000471804.7:ENST00000680068.1:ENST00000681807.1:ENST00000681604.1:ENST00000680512.1:ENST00000397659.9:ENST00000679713.1:ENST00000679473.1:ENST00000679617.1:ENST00000681395.1:ENST00000464809.5:ENST00000480648.5:ENST00000680445.1:ENST00000680168.1:ENST00000482281.6:ENST00000463313.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	4.69798	4.9812449999999995	5.26451	0.088901	0.00800901	0.183874	0.0580954
chr7	101877731	101877831	3434586	0	+	0.4	(0.39,0.419]	chr7	332510	584	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	49	2	4.69798	4.9812449999999995	5.26451	0.088901	0.00800901	0.183874	0.0580954
chr10	92857717	92857816	4551277	0	+	0.353535	(0.33,0.36]	chr10	434413	87	INTRON	INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1:ENST00000371552.8:ENST00000443748.6:ENST00000371543.5:ENST00000260762.10	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.57958	4.98121	5.38284	0.0317908	0.0288057	0.123764	0.121384
chr11	68422093	68422193	4883191	0	+	0.36	(0.33,0.36]	chr11	470622	52	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	132	2	2.98982	4.98109	6.97236	0.027642	0.0021433	0.120359	0.0291055
chr3	42138770	42138869	1450916	0	+	0.333333	(0.33,0.36]	chr3	154868	128	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2:ENST00000484786.5:ENST00000327628.10	protein_coding	protein_coding	protein_coding	protein_coding	1	132	2	3.70527	4.98105	6.25683	0.0170176	6.42061e-4	0.0889995	0.0104165
chr10	103666136	103666235	4756754	0	-	0.464646	(0.45,0.485]	chr10	454763	46	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000691105.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	4.41963	4.980745	5.54186	0.0355247	0.0243502	0.137983	0.106588
chr11	70773860	70773960	5062020	0	-	0.47	(0.45,0.485]	chr11	492701	560	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	4.41963	4.980745	5.54186	0.0355247	0.0243502	0.137983	0.106588
chr3	129103941	129104041	1910661	0	-	0.47	(0.45,0.485]	chr3	194029	84	INTRON	INTRON	RAB43:ISY1-RAB43	ENSG00000172780.17:ENSG00000261796.1	ENST00000393305.5:ENST00000393307.5:ENST00000393308.5:ENST00000393304.5:ENST00000315150.10:ENST00000418265.1:ENST00000476465.5:ENST00000615093.1:ENST00000457077.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.41963	4.980745	5.54186	0.0355247	0.0243502	0.137983	0.106588
chr9	35832207	35832304	4145604	0	+	0.463918	(0.45,0.485]	chr9	394383	19	INTRON	INTRON	TMEM8B	ENSG00000137103.20	ENST00000377996.5:ENST00000643932.2:ENST00000439587.6:ENST00000377991.9:ENST00000650015.1:ENST00000464519.6:ENST00000377988.6:ENST00000473947.1:ENST00000490199.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	4.41963	4.980745	5.54186	0.0355247	0.0243502	0.137983	0.106588
chr10	75726848	75726948	4523432	0	+	0.38	(0.36,0.39]	chr10	432271	789	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	110	2	3.85704	4.98071	6.10438	0.0117824	0.00420937	0.073726	0.0380601
chr21	45451525	45451625	7630778	0	+	0.54	(0.523,0.58]	chr21	797656	457	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	1	105	2	3.78755	4.98069	6.17383	0.00760615	0.00401039	0.0579698	0.0371192
chr19	53521610	53521705	7290496	0	+	0.589474	(0.58,1]	chr19	750312	8	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	ZNF331	ENSG00000130844.19	ENST00000647573.1:ENST00000648236.1:ENST00000513929.6:ENST00000253144.13:ENST00000649326.1:ENST00000650177.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	133	2	4.3681	4.98067	5.59324	0.00289039	0.0014734	0.03418	0.0185589
chr2	62763367	62763466	814532	0	+	0.242424	[0,0.29]	chr2	92084	156	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000449820.5:ENST00000426940.5:ENST00000413434.5:ENST00000405482.5:ENST00000427809.5:ENST00000494958.1:ENST00000472809.5:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	4.54275	4.9805150000000005	5.41828	0.0681032	0.00336232	0.164448	0.0328612
chr7	97135987	97136087	3422937	0	+	0.27	[0,0.29]	chr7	330494	2	SS3_PROX	SS3_PROX:INTRON	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000489852.1:ENST00000360382.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.54275	4.9805150000000005	5.41828	0.0681032	0.00336232	0.164448	0.0328612
chr8	13085418	13085516	3939338	0	-	0.408163	(0.39,0.419]	chr8	376628	22	UTR3	UTR3:EXON_MRNA	DLC1	ENSG00000164741.15	ENST00000276297.9:ENST00000358919.6	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.86193	4.9804949999999995	5.09906	0.0535378	0.0182739	0.150319	0.0958352
chr12	132541329	132541429	5353029	0	+	0.68	(0.58,1]	chr12	523670	130	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.54927	4.980105	5.41094	0.0643046	0.00240622	0.161669	0.0261006
chr15	65361646	65361745	6303584	0	-	0.616162	(0.58,1]	chr15	621389	54	INTRON	INTRON	IGDCC3	ENSG00000174498.14	ENST00000327987.9	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.54927	4.980105	5.41094	0.0643046	0.00240622	0.161669	0.0261006
chr12	109222206	109222306	5322646	0	+	0.46	(0.45,0.485]	chr12	518616	3	SS3_PROX	SS3_PROX:INTRON	ACACB	ENSG00000076555.16	ENST00000338432.12:ENST00000377848.7:ENST00000377854.9	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.77571	4.9800450000000005	5.18438	0.0719884	0.00773818	0.168159	0.0568726
chr11	68511840	68511940	4883993	0	+	0.42	(0.419,0.45]	chr11	470702	62	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.7549	4.97999	5.20508	0.0888907	0.00979452	0.183874	0.0664239
chr2	235501943	235502042	1062615	0	+	0.434343	(0.419,0.45]	chr2	115651	67	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	4.47684	4.97997	5.4831	0.0389508	0.0345118	0.142578	0.126025
chr3	58270132	58270232	1485082	0	+	0.42	(0.419,0.45]	chr3	159868	3	INTRON	INTRON	ABHD6	ENSG00000163686.15	ENST00000295962.8:ENST00000478253.6:ENST00000463756.5:ENST00000485900.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.47684	4.97997	5.4831	0.0389508	0.0345118	0.142578	0.126025
chr8	22559081	22559178	3771883	0	+	0.525773	(0.523,0.58]	chr8	362926	5	INTRON	INTRON	SORBS3	ENSG00000120896.14	ENST00000240123.12:ENST00000517500.5:ENST00000517535.5:ENST00000523402.5:ENST00000520563.3:ENST00000524057.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	50	2	4.60868	4.97996	5.35124	0.0295772	0.0226775	0.116079	0.108193
chr6	144347600	144347699	3020486	0	+	0.555556	(0.523,0.58]	chr6	295148	29	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1:ENST00000628146.2:ENST00000421035.2	protein_coding	protein_coding	protein_coding	protein_coding	1	130	2	3.83429	4.979895	6.1255	0.012469	6.23263e-4	0.0761905	0.0101764
chr4	122992907	122993007	2119304	0	+	0.35	(0.33,0.36]	chr4	215732	19	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5:ENST00000422835.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.49572	4.979635	5.46355	0.103264	0.00462971	0.197541	0.0408278
chr15	41802208	41802307	6086870	0	+	0.464646	(0.45,0.485]	chr15	598646	19	INTRON	INTRON	MAPKBP1	ENSG00000137802.14	ENST00000512970.5:ENST00000457542.7:ENST00000505373.5:ENST00000456763.6:ENST00000514566.5:ENST00000502292.5:ENST00000510535.1:ENST00000627631.1:ENST00000505061.5:ENST00000507762.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	4.95056	4.9795750000000005	5.00859	0.052901	0.0127826	0.14912	0.0773423
chr16	32772388	32772487	6442271	0	+	0.454545	(0.45,0.485]	chr16	638922	9	INTRON	INTRON	HERC2P5	ENSG00000260644.6	ENST00000562687.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	0	48	2	4.95056	4.9795750000000005	5.00859	0.052901	0.0127826	0.14912	0.0773423
chr16	72974631	72974731	6627154	0	-	0.48	(0.45,0.485]	chr16	663547	9	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2:ENST00000397992.5:ENST00000268489.10	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.95056	4.9795750000000005	5.00859	0.052901	0.0127826	0.14912	0.0773423
chrX	9526193	9526292	7843057	0	+	0.464646	(0.45,0.485]	chrX	822404	240	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.95056	4.9795750000000005	5.00859	0.052901	0.0127826	0.14912	0.0773423
chr11	70778556	70778656	5062067	0	-	0.55	(0.523,0.58]	chr11	492701	607	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.5249	4.979505	5.43411	0.0266135	0.026041	0.118113	0.109673
chr18	49292301	49292401	7160595	0	-	0.56	(0.523,0.58]	chr18	727903	53	INTRON	INTRON	DYM	ENSG00000141627.14	ENST00000675505.1:ENST00000269445.10:ENST00000442713.6:ENST00000584983.5:ENST00000418472.6:ENST00000580615.1:ENST00000583225.5:ENST00000581738.5:ENST00000583280.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.5249	4.979505	5.43411	0.0266135	0.026041	0.118113	0.109673
chr2	233133945	233134045	1057954	0	+	0.53	(0.523,0.58]	chr2	115075	29	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000451407.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	4.5249	4.979505	5.43411	0.0266135	0.026041	0.118113	0.109673
chr2	61226368	61226467	1155176	0	-	0.353535	(0.33,0.36]	chr2	126499	27	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000463046.5:ENST00000472706.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	146	2	3.63606	4.979485	6.32291	0.00694591	0.00226159	0.0553908	0.0250561
chr12	132937534	132937634	5541902	0	-	0.42	(0.419,0.45]	chr12	547052	40	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	49	2	4.91849	4.9794599999999996	5.04043	0.0625897	0.0174488	0.160305	0.0928044
chr7	96977548	96977647	3646065	0	-	0.424242	(0.419,0.45]	chr7	350894	81	INTRON	INTRON	DLX6-AS1	ENSG00000231764.11	ENST00000430027.3:ENST00000659765.1:ENST00000458352.5:ENST00000656954.1:ENST00000605417.6:ENST00000654988.1:ENST00000658043.1:ENST00000452769.4:ENST00000437331.4:ENST00000430404.7	lncRNA	lncRNA	lncRNA	lncRNA	0	49	2	4.91849	4.9794599999999996	5.04043	0.0625897	0.0174488	0.160305	0.0928044
chrX	150877942	150878042	8121692	0	-	0.45	(0.419,0.45]	chrX	846089	463	INTRON	INTRON	CD99L2	ENSG00000102181.21	ENST00000370377.8:ENST00000346693.8:ENST00000437787.6:ENST00000613030.4:ENST00000355149.8:ENST00000466436.5:ENST00000491877.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	49	2	4.91849	4.9794599999999996	5.04043	0.0625897	0.0174488	0.160305	0.0928044
chr21	43725965	43726064	7623853	0	+	0.606061	(0.58,1]	chr21	796696	22	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000438837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	100	2	3.64686	4.979395	6.31193	0.00447535	0.00289626	0.0398484	0.03418
chr20	23634299	23634399	7537525	0	-	0.66	(0.58,1]	chr20	786639	3	SS3_PROX	SS3_PROX:INTRON	CST3	ENSG00000101439.9	ENST00000398411.5:ENST00000398409.1:ENST00000376925.8	protein_coding	protein_coding	protein_coding	protein_coding	2	129	2	3.66931	4.979225	6.28914	0.00303562	0.00122119	0.0350226	0.0163226
chr16	20874963	20875063	6563342	0	-	0.46	(0.45,0.485]	chr16	654538	61	INTRON	INTRON	ERI2:DCUN1D3	ENSG00000196678.14:ENSG00000188215.10	ENST00000564349.5:ENST00000324344.9	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.5725	4.979015	5.38553	0.0926859	0.00490471	0.188571	0.0422077
chr2	135672742	135672841	901960	0	+	0.464646	(0.45,0.485]	chr2	101650	69	INTRON	INTRON	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000410054.5:ENST00000628915.2:ENST00000409606.5:ENST00000429703.6	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.5725	4.979015	5.38553	0.0926859	0.00490471	0.188571	0.0422077
chr3	111818135	111818235	1535132	0	+	0.32	(0.29,0.33]	chr3	162945	398	INTRON	INTRON	PLCXD2:PHLDB2	ENSG00000240891.8:ENSG00000144824.21	ENST00000393934.7:ENST00000477665.2:ENST00000393923.7	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.51618	4.978765	5.44135	0.0285091	0.0236557	0.123012	0.105002
chr14	104778286	104778381	6057672	0	-	0.610526	(0.58,1]	chr14	594698	17	EXON_MRNA	EXON_MRNA:INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000557552.1:ENST00000683722.1:ENST00000555528.5:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000554848.5:ENST00000682269.1:ENST00000555380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	47	2	4.74346	4.978615	5.21377	0.0230012	0.0121457	0.102982	0.0754623
chr19	933341	933441	7185179	0	+	0.69	(0.58,1]	chr19	730741	2	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.74346	4.978615	5.21377	0.0230012	0.0121457	0.102982	0.0754623
chr2	73050299	73050399	1189317	0	-	0.59	(0.58,1]	chr2	128890	4	SS3_PROX	SS3_PROX:INTRON	SFXN5	ENSG00000144040.13	ENST00000272433.7:ENST00000461352.5:ENST00000474528.5:ENST00000411783.5:ENST00000410065.5:ENST00000416579.5:ENST00000450185.5:ENST00000442582.1:ENST00000487508.5:ENST00000497144.5:ENST00000479293.5:ENST00000485057.5:ENST00000475630.5:ENST00000472259.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.74346	4.978615	5.21377	0.0230012	0.0121457	0.102982	0.0754623
chr3	13199226	13199326	1691134	0	-	0.61	(0.58,1]	chr3	176566	347	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.74346	4.978615	5.21377	0.0230012	0.0121457	0.102982	0.0754623
chr4	6664713	6664812	2186184	0	-	0.69697	(0.58,1]	chr4	221877	23	INTRON	INTRON	LINC02482	ENSG00000251580.3	ENST00000647523.2:ENST00000667300.1	lncRNA	lncRNA	lncRNA	lncRNA	0	47	2	4.74346	4.978615	5.21377	0.0230012	0.0121457	0.102982	0.0754623
chr9	134350213	134350313	4260925	0	+	0.7	(0.58,1]	chr9	406311	232	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	4.74346	4.978615	5.21377	0.0230012	0.0121457	0.102982	0.0754623
chr2	235521425	235521525	1062810	0	+	0.28	[0,0.29]	chr2	115651	262	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.85009	4.97851	5.10693	0.0292928	0.0124991	0.116079	0.0765738
chr2	61239073	61239172	1155314	0	-	0.464646	(0.45,0.485]	chr2	126540	23	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000463046.5:ENST00000472706.5:ENST00000453734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	177	2	3.61044	4.978495	6.34655	0.00642055	0.00120342	0.0529785	0.0161623
chr18	76413570	76413670	7179255	0	-	0.5	(0.485,0.523]	chr18	730080	329	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.60518	4.978425	5.35167	0.0294163	0.0233371	0.116079	0.110098
chr9	134341231	134341330	4260835	0	+	0.50505	(0.485,0.523]	chr9	406311	142	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	50	2	4.60518	4.978425	5.35167	0.0294163	0.0233371	0.116079	0.110098
chr2	239381892	239381992	1392531	0	-	0.58	(0.523,0.58]	chr2	148759	286	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	4.65157	4.97836	5.30515	0.0787008	0.00509102	0.175203	0.0433513
chr3	51975404	51975504	1472714	0	+	0.53	(0.523,0.58]	chr3	158082	2	SS5_PROX	SS5_PROX:INTRON	ABHD14A	ENSG00000248487.10	ENST00000497864.5:ENST00000494478.5:ENST00000273596.8:ENST00000474575.1:ENST00000491470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	4.65157	4.97836	5.30515	0.0787008	0.00509102	0.175203	0.0433513
chr7	74500899	74500999	3391836	0	+	0.35	(0.33,0.36]	chr7	327343	464	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.65869	4.978115	5.29754	0.0360263	0.0248983	0.127853	0.114418
chr10	103789510	103789610	4757999	0	-	0.51	(0.485,0.523]	chr10	454813	220	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.52142	4.977975	5.43453	0.0273555	0.0258944	0.119337	0.109555
chr13	113009670	113009770	5655720	0	+	0.48	(0.45,0.485]	chr13	555138	73	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	4.74641	4.977735	5.20906	0.0399616	0.0193126	0.133954	0.0994526
chr10	114434774	114434873	4762111	0	-	0.525253	(0.523,0.58]	chr10	455500	38	UTR3	UTR3:EXON_MRNA	ABLIM1	ENSG00000099204.21	ENST00000533213.7:ENST00000392955.7:ENST00000392952.7	protein_coding	protein_coding	protein_coding	protein_coding	2	290	2	4.86674	4.977705	5.08867	0.00113504	1.96709e-4	0.0203553	0.00447406
chr16	78989711	78989811	6504316	0	+	0.56	(0.523,0.58]	chr16	645717	2094	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	105	2	4.16563	4.977435	5.78924	0.0147166	0.00147865	0.0826843	0.0186157
chr9	133917061	133917161	4429571	0	-	0.56	(0.523,0.58]	chr9	423310	553	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.83424	4.9773700000000005	5.1205	0.0416463	0.0144272	0.136301	0.0833845
chr16	85377841	85377941	6516849	0	+	0.69	(0.58,1]	chr16	646391	185	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.18518	4.977259999999999	5.76934	0.0374658	0.00849371	0.139793	0.0617717
chr12	94997207	94997307	5475517	0	-	0.35	(0.33,0.36]	chr12	538271	1	SS5_ADJ	SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	NDUFA12	ENSG00000184752.14	ENST00000552205.6:ENST00000684171.1:ENST00000547157.1:ENST00000682903.1:ENST00000327772.7:ENST00000684558.1:ENST00000551991.5:ENST00000547986.5:ENST00000546788.1:ENST00000550187.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.89468	4.977025	5.05937	0.0629186	0.0112642	0.160778	0.071709
chr6	159711629	159711729	3300582	0	-	0.49	(0.485,0.523]	chr6	319519	184	INTRON	INTRON	SOD2	ENSG00000112096.19	ENST00000546087.5:ENST00000545162.5:ENST00000535561.5:ENST00000537657.5:ENST00000401980.3	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.65198	4.976785	5.30159	0.0783889	0.00529578	0.175203	0.044517
chr7	47381011	47381111	3587602	0	-	0.5	(0.485,0.523]	chr7	346036	110	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.65198	4.976785	5.30159	0.0783889	0.00529578	0.175203	0.044517
chr4	84908896	84908996	2274267	0	-	0.3	(0.29,0.33]	chr4	229367	115	INTRON	INTRON	WDFY3	ENSG00000163625.16	ENST00000295888.9:ENST00000509172.1:ENST00000502713.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.82544	4.976570000000001	5.1277	0.0382902	0.0156279	0.131324	0.0877396
chr13	113029628	113029727	5655925	0	+	0.707071	(0.58,1]	chr13	555157	27	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486806.1:ENST00000473345.5	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.3962	4.9765049999999995	5.55681	0.0250928	0.0126042	0.114418	0.0761905
chr9	134370472	134370572	4261128	0	+	0.59	(0.58,1]	chr9	406311	435	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	51	2	4.3962	4.9765049999999995	5.55681	0.0250928	0.0126042	0.114418	0.0761905
chr16	81627889	81627989	6509576	0	+	0.67	(0.58,1]	chr16	645926	58	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	2	159	2	3.41854	4.97642	6.5343	0.00841183	8.82891e-5	0.0616845	0.00248664
chrX	133803828	133803928	8114205	0	-	0.27	[0,0.29]	chrX	845523	493	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	120	2	3.29134	4.97642	6.6615	0.0252424	1.05379e-4	0.108073	0.00285635
chr21	15827799	15827896	7592101	0	+	0.309278	(0.29,0.33]	chr21	793797	2	INTRON	INTRON	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9:ENST00000453553.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.51301	4.976275	5.43954	0.0885563	0.00401582	0.183874	0.0371286
chr22	20124917	20125014	7686892	0	+	0.587629	(0.58,1]	chr22	804214	9	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000331821.7:ENST00000411892.5:ENST00000423859.5:ENST00000418705.2:ENST00000448394.2:ENST00000486575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	97	2	3.85993	4.976245	6.09256	0.00452436	0.00251049	0.0436138	0.026941
chr2	240521213	240521304	1394647	0	-	0.615385	(0.58,1]	chr2	149020	3	INTRON	INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000405523.7	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.6951	4.976205	5.25731	0.0521567	0.00358178	0.148503	0.0342681
chr1	155336263	155336363	595434	0	-	0.35	(0.33,0.36]	chr1	69922	11	UTR3	UTR3:EXON_MRNA	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000677992.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.83538	4.97596	5.11654	0.0679743	0.00998589	0.164413	0.0667545
chr17	66213271	66213368	6956512	0	-	0.350515	(0.33,0.36]	chr17	709460	7	INTRON	INTRON	APOH	ENSG00000091583.11	ENST00000205948.11:ENST00000585162.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.83538	4.97596	5.11654	0.0679743	0.00998589	0.164413	0.0667545
chr20	38037661	38037760	7475029	0	+	0.353535	(0.33,0.36]	chr20	778372	32	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000495457.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.83538	4.97596	5.11654	0.0679743	0.00998589	0.164413	0.0667545
chr2	10189705	10189804	718198	0	+	0.494949	(0.485,0.523]	chr2	84002	336	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	48	2	4.83072	4.975820000000001	5.12092	0.0414411	0.0148956	0.136301	0.0847741
chr3	31688110	31688210	1727457	0	-	0.51	(0.485,0.523]	chr3	178975	36	INTRON	INTRON	OSBPL10	ENSG00000144645.15	ENST00000429492.6:ENST00000396556.7:ENST00000438237.6:ENST00000673388.1:ENST00000467598.5:ENST00000472175.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.83072	4.975820000000001	5.12092	0.0414411	0.0148956	0.136301	0.0847741
chr6	16620515	16620615	3103044	0	-	0.39	(0.36,0.39]	chr6	300871	40	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6:ENST00000495178.1:ENST00000646259.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	133	2	3.47116	4.9757549999999995	6.48035	0.0269033	4.10333e-4	0.112113	0.00761562
chr11	9170777	9170874	4989876	0	-	0.350515	(0.33,0.36]	chr11	482976	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DENND5A	ENSG00000184014.9	ENST00000328194.8:ENST00000681203.1:ENST00000530780.2:ENST00000680358.1:ENST00000679999.1:ENST00000679458.1:ENST00000680470.1:ENST00000680599.1:ENST00000680554.1:ENST00000679745.1:ENST00000679926.1:ENST00000680252.1:ENST00000681425.1:ENST00000681158.1:ENST00000679460.1:ENST00000679568.1:ENST00000679446.1:ENST00000680294.1:ENST00000680742.1:ENST00000680885.1:ENST00000680576.1:ENST00000530044.5:ENST00000527700.5:ENST00000526707.5:ENST00000681173.1:ENST00000527896.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	4.95163	4.97574	4.99985	0.0583482	0.0127452	0.155373	0.0773423
chr7	129924579	129924679	3707454	0	-	0.39	(0.36,0.39]	chr7	356230	3	SS5_PROX	SS5_PROX:INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	137	2	3.81067	4.975705	6.14074	0.015515	0.0010006	0.0849828	0.0142243
chr17	72317722	72317822	6961440	0	-	0.52	(0.485,0.523]	chr17	710221	258	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1	lncRNA	lncRNA	lncRNA	lncRNA	0	49	2	4.50634	4.9756149999999995	5.44489	0.0939553	0.00377098	0.188571	0.0353672
chr3	14403247	14403347	1414979	0	+	0.52	(0.485,0.523]	chr3	151900	4	SS5_PROX	SS5_PROX:INTRON	SLC6A6	ENSG00000131389.18	ENST00000613060.4:ENST00000618278.4:ENST00000610642.4:ENST00000622810.4:ENST00000649500.1:ENST00000622186.5:ENST00000621751.4:ENST00000613930.4:ENST00000622176.4:ENST00000615188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.50634	4.9756149999999995	5.44489	0.0939553	0.00377098	0.188571	0.0353672
chr1	14943422	14943522	43841	0	+	0.55	(0.523,0.58]	chr1	4384	130	INTRON	INTRON	KAZN	ENSG00000189337.17	ENST00000636203.1:ENST00000376030.7:ENST00000491547.1:ENST00000503743.5:ENST00000361144.9:ENST00000400798.6:ENST00000376028.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	4.68785	4.975585000000001	5.26332	0.0337698	0.0194172	0.124319	0.0994526
chr2	112056353	112056451	876815	0	+	0.530612	(0.523,0.58]	chr2	99004	2	INTRON	INTRON	TMEM87B	ENSG00000153214.11	ENST00000283206.9:ENST00000650799.1:ENST00000452614.5:ENST00000452029.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.68785	4.975585000000001	5.26332	0.0337698	0.0194172	0.124319	0.0994526
chr9	128808467	128808565	4248036	0	+	0.602041	(0.58,1]	chr9	404080	7	UTR3	UTR3:EXON_MRNA	TBC1D13	ENSG00000107021.16	ENST00000372648.10:ENST00000223865.8	protein_coding	protein_coding	protein_coding	protein_coding	1	115	2	3.68546	4.97545	6.26544	0.0116759	2.06156e-4	0.0735761	0.00461335
chr10	132554457	132554557	4617005	0	+	0.61	(0.58,1]	chr10	441139	159	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.89007	4.975384999999999	5.0607	0.029633	0.00872525	0.116079	0.0612699
chr14	23521801	23521900	5757172	0	+	0.646465	(0.58,1]	chr14	564963	70	INTRON	INTRON	ZFHX2-AS1	ENSG00000157306.14	ENST00000556354.5:ENST00000553985.1:ENST00000554403.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	46	2	4.89007	4.975384999999999	5.0607	0.029633	0.00872525	0.116079	0.0612699
chr2	239276181	239276281	1391470	0	-	0.59	(0.58,1]	chr2	148740	246	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	46	2	4.89007	4.975384999999999	5.0607	0.029633	0.00872525	0.116079	0.0612699
chr17	80025301	80025401	6982169	0	-	0.66	(0.58,1]	chr17	713081	113	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7	protein_coding	protein_coding	protein_coding	protein_coding	1	116	2	3.35086	4.975275	6.59969	0.0218816	7.15008e-5	0.101015	0.00213784
chr14	89335955	89336055	6027462	0	-	0.34	(0.33,0.36]	chr14	591456	23	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	289	2	4.57944	4.975255	5.37107	0.0035621200000000002	6.02869e-5	0.0383188	0.00187763
chr19	35002221	35002321	7244880	0	+	0.53	(0.523,0.58]	chr19	742064	4	SS3_PROX	SS3_PROX:INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	179	2	3.45038	4.97481	6.49924	0.0114883	2.16101e-4	0.0725944	0.00477041
chr2	127496846	127496945	1266283	0	-	0.363636	(0.36,0.39]	chr2	136447	3	INTRON	INTRON	IWS1	ENSG00000163166.15	ENST00000295321.9	protein_coding	protein_coding	protein_coding	protein_coding	1	133	2	3.51307	4.974765	6.43646	0.0251771	4.61522e-4	0.107924	0.00824056
chr3	51499872	51499943	1776518	0	-	0.746479	(0.58,1]	chr3	184541	1	UTR5	UTR5:EXON_MRNA	DCAF1	ENSG00000145041.16	ENST00000504652.5:ENST00000423656.5:ENST00000684031.1	protein_coding	protein_coding	protein_coding	protein_coding	4	437	2	4.80119	4.9746950000000005	5.1482	3.95703e-4	9.1799e-6	0.011372	4.83148e-4
chr1	235320816	235320916	691121	0	-	0.43	(0.419,0.45]	chr1	81362	597	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	114	2	3.56166	4.9746500000000005	6.38764	0.00882182	0.00863623	0.0623824	0.061625
chr8	18727300	18727400	3949242	0	-	0.43	(0.419,0.45]	chr8	377204	433	INTRON	INTRON	PSD3	ENSG00000156011.18	ENST00000327040.13:ENST00000440756.4:ENST00000286485.12:ENST00000523619.5:ENST00000518315.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	4.7145	4.974285	5.23407	0.0486006	0.0256236	0.145074	0.115966
chr16	87124843	87124943	6652484	0	-	0.46	(0.45,0.485]	chr16	665579	406	INTRON	INTRON	C16orf95	ENSG00000260456.7	ENST00000562840.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	48	2	4.7111	4.974225000000001	5.23735	0.0781398	0.00687715	0.175203	0.0526888
chr18	74835213	74835313	7091629	0	+	0.48	(0.45,0.485]	chr18	722438	307	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.7111	4.974225000000001	5.23735	0.0781398	0.00687715	0.175203	0.0526888
chr20	8448448	8448548	7429752	0	+	0.46	(0.45,0.485]	chr20	773698	764	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	4.7111	4.974225000000001	5.23735	0.0781398	0.00687715	0.175203	0.0526888
chr20	18636680	18636780	7443799	0	+	0.47	(0.45,0.485]	chr20	774758	41	INTRON	INTRON	ENSG00000284776:DTD1	ENSG00000284776.1:ENSG00000125821.13	ENST00000618693.4:ENST00000647441.1:ENST00000377452.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.7111	4.974225000000001	5.23735	0.0781398	0.00687715	0.175203	0.0526888
chr3	4340145	4340245	1676552	0	-	0.47	(0.45,0.485]	chr3	175311	2710	INTRON	INTRON	SUMF1	ENSG00000144455.14	ENST00000448413.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	48	2	4.7111	4.974225000000001	5.23735	0.0781398	0.00687715	0.175203	0.0526888
chr1	225879119	225879219	674436	0	-	0.56	(0.523,0.58]	chr1	79332	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TMEM63A	ENSG00000196187.12	ENST00000366835.8	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.43597	4.974220000000001	5.51247	0.0313935	0.0230387	0.127822	0.102982
chr16	85384638	85384738	6516917	0	+	0.57	(0.523,0.58]	chr16	646391	253	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.43597	4.974220000000001	5.51247	0.0313935	0.0230387	0.127822	0.102982
chr22	46614885	46614985	7744324	0	+	0.58	(0.523,0.58]	chr22	812034	372	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000447351.5:ENST00000431155.1	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.43597	4.974220000000001	5.51247	0.0313935	0.0230387	0.127822	0.102982
chr20	62959714	62959810	7508294	0	+	0.65625	(0.58,1]	chr20	783180	18	INTRON	INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	162	2	2.89304	4.974114999999999	7.05519	0.00592504	5.81818e-4	0.047896	0.0141176
chr2	171023329	171023429	1312794	0	-	0.34	(0.33,0.36]	chr2	140574	2	SS3_PROX	SS3_PROX:INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	132	2	3.21861	4.974075	6.72954	0.0374008	1.75295e-4	0.130656	0.00411175
chr13	20456608	20456708	5662403	0	-	0.49	(0.485,0.523]	chr13	556188	165	INTRON	INTRON	CRYL1	ENSG00000165475.15	ENST00000643035.1:ENST00000644593.1:ENST00000298248.12:ENST00000644872.1:ENST00000382812.5:ENST00000643750.1:ENST00000644153.1:ENST00000643887.1:ENST00000644167.1:ENST00000480748.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	49	2	4.68434	4.974045	5.26375	0.0335928	0.0200045	0.124319	0.100864
chr17	29128644	29128744	6876448	0	-	0.5	(0.485,0.523]	chr17	697993	1	SS3_PROX	SS3_PROX:INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000590242.5:ENST00000528564.2:ENST00000528322.6:ENST00000585573.6:ENST00000533420.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.68434	4.974045	5.26375	0.0335928	0.0200045	0.124319	0.100864
chr4	55448542	55448642	2044542	0	+	0.49	(0.485,0.523]	chr4	208977	225	INTRON	INTRON	TMEM165	ENSG00000134851.13	ENST00000608091.1:ENST00000506103.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.68434	4.974045	5.26375	0.0335928	0.0200045	0.124319	0.100864
chr11	70812168	70812267	5062405	0	-	0.464646	(0.45,0.485]	chr11	492713	46	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	129	2	3.57937	4.97377	6.36817	0.0206537	3.97249e-4	0.0984724	0.00741985
chr17	29131282	29131382	6876475	0	-	0.57	(0.523,0.58]	chr17	697996	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000590242.5:ENST00000528564.2:ENST00000528322.6:ENST00000585573.6:ENST00000533420.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	293	2	4.80707	4.97359	5.14011	0.00102277	2.35254e-4	0.0192115	0.00508037
chr2	236078248	236078348	1068404	0	+	0.47	(0.45,0.485]	chr2	115777	58	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000418654.1:ENST00000466575.5:ENST00000453371.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	4.88567	4.973525	5.06138	0.0492008	0.0146126	0.146142	0.0837727
chr6	52413963	52414063	2924966	0	+	0.46	(0.45,0.485]	chr6	288030	4	INTRON	INTRON	EFHC1	ENSG00000096093.16	ENST00000635984.1:ENST00000637849.1:ENST00000635760.1:ENST00000491749.2:ENST00000637315.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.88567	4.973525	5.06138	0.0492008	0.0146126	0.146142	0.0837727
chr9	111466612	111466712	4368992	0	-	0.47	(0.45,0.485]	chr9	417454	147	INTRON	INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5:ENST00000602978.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.88567	4.973525	5.06138	0.0492008	0.0146126	0.146142	0.0837727
chr10	18561464	18561564	4642343	0	-	0.32	(0.29,0.33]	chr10	443321	91	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.42727	4.973495	5.51972	0.0335282	0.0208628	0.133139	0.0991037
chr13	33214199	33214299	5684739	0	-	0.29	[0,0.29]	chr13	558196	83	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	106	2	4.43525	4.973355	5.51146	0.0147753	6.17314e-4	0.0829204	0.0101143
chr9	137570426	137570525	4435768	0	-	0.575758	(0.523,0.58]	chr9	424466	49	INTRON	INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000475100.5:ENST00000472113.5:ENST00000485189.5:ENST00000467768.5:ENST00000477690.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	105	2	4.1892	4.97331	5.75742	0.0155135	0.00138633	0.0849828	0.0179017
chr1	36251399	36251499	92052	0	+	0.42	(0.419,0.45]	chr1	10759	256	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.69033	4.9732400000000005	5.25615	0.0958674	0.00879729	0.189038	0.0615125
chr2	134159267	134159367	895823	0	+	0.44	(0.419,0.45]	chr2	101196	317	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.69033	4.9732400000000005	5.25615	0.0958674	0.00879729	0.189038	0.0615125
chr3	195380808	195380908	1983833	0	-	0.42	(0.419,0.45]	chr3	201872	4	SS5_PROX	SS5_PROX:INTRON	ACAP2	ENSG00000114331.16	ENST00000326793.11:ENST00000635383.1:ENST00000480906.5:ENST00000481463.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	49	2	4.69033	4.9732400000000005	5.25615	0.0958674	0.00879729	0.189038	0.0615125
chr7	47556037	47556137	3589378	0	-	0.42	(0.419,0.45]	chr7	346152	166	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.69033	4.9732400000000005	5.25615	0.0958674	0.00879729	0.189038	0.0615125
chr8	18945046	18945146	3951450	0	-	0.45	(0.419,0.45]	chr8	377308	47	INTRON	INTRON	PSD3	ENSG00000156011.18	ENST00000327040.13:ENST00000440756.4:ENST00000521475.1:ENST00000521841.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.69033	4.9732400000000005	5.25615	0.0958674	0.00879729	0.189038	0.0615125
chr9	101548117	101548216	4204788	0	+	0.363636	(0.36,0.39]	chr9	399240	2	INTRON	INTRON	RNF20	ENSG00000155827.12	ENST00000389120.8	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.6317	4.9730550000000004	5.31441	0.0950937	0.00715023	0.189021	0.0541241
chr10	100228927	100229027	4747971	0	-	0.59	(0.58,1]	chr10	453688	1	SS5_PROX	SS5_PROX:INTRON	CHUK	ENSG00000213341.11	ENST00000370397.8	protein_coding	protein_coding	protein_coding	protein_coding	1	97	2	4.20999	4.973005000000001	5.73602	0.00904546	9.16802e-4	0.0637469	0.0133866
chr7	111090336	111090436	3682967	0	-	0.36	(0.33,0.36]	chr7	354615	1264	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.77355	4.972535000000001	5.17152	0.0735809	0.00887848	0.17026	0.0618231
chr8	103025020	103025119	3888583	0	+	0.333333	(0.33,0.36]	chr8	372312	34	INTRON	INTRON	ATP6V1C1	ENSG00000155097.12	ENST00000395862.7:ENST00000518857.5:ENST00000518738.2:ENST00000521514.5	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.77355	4.972535000000001	5.17152	0.0735809	0.00887848	0.17026	0.0618231
chrX	129839686	129839786	8100606	0	-	0.44	(0.419,0.45]	chrX	844772	102	INTRON	INTRON	ZDHHC9	ENSG00000188706.13	ENST00000357166.11:ENST00000371064.7:ENST00000433917.5:ENST00000406492.2	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.85365	4.9724900000000005	5.09133	0.0586308	0.0197641	0.155565	0.100774
chr21	37101254	37101343	7617710	0	+	0.348315	(0.33,0.36]	chr21	795749	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	TTC3:ENSG00000270116	ENSG00000182670.14:ENSG00000270116.1	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000411496.2:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5:ENST00000602568.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA:processed_transcript	1	114	2	3.42056	4.972315	6.52407	0.0110831	0.00487053	0.071519	0.0456282
chr1	117435136	117435235	220073	0	+	0.393939	(0.39,0.419]	chr1	24287	141	INTRON	INTRON	MAN1A2	ENSG00000198162.12	ENST00000356554.7:ENST00000449370.6	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.63037	4.972110000000001	5.31385	0.0963077	0.0071966	0.189169	0.0543014
chr5	108303408	108303508	2739021	0	-	0.34	(0.33,0.36]	chr5	268863	788	INTRON	INTRON	FBXL17	ENSG00000145743.18	ENST00000542267.7:ENST00000496714.2:ENST00000481160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	4.93777	4.972095	5.00642	0.0542065	0.0144674	0.151733	0.0833845
chr2	38326505	38326605	1123825	0	-	0.37	(0.36,0.39]	chr2	123019	71	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	4.79458	4.97208	5.14958	0.0493212	0.0207145	0.146207	0.102713
chrX	72457991	72458089	8063059	0	-	0.387755	(0.36,0.39]	chrX	841360	7	UTR3	UTR3:EXON_MRNA:INTRON	HDAC8	ENSG00000147099.21	ENST00000373583.6:ENST00000373573.9:ENST00000648850.1:ENST00000648452.1:ENST00000649097.1:ENST00000647886.1:ENST00000648855.1:ENST00000647654.1:ENST00000648939.1:ENST00000648504.1:ENST00000648459.1:ENST00000373589.9:ENST00000650604.1:ENST00000647594.1:ENST00000647980.1:ENST00000647859.1:ENST00000650076.1:ENST00000648731.1:ENST00000649181.1:ENST00000649274.1:ENST00000650471.1:ENST00000648276.1:ENST00000470998.2:ENST00000647641.1:ENST00000649543.1:ENST00000373568.7:ENST00000648139.1:ENST00000648834.1:ENST00000648711.1:ENST00000436675.6:ENST00000647606.1:ENST00000415409.6:ENST00000478743.2:ENST00000648298.1:ENST00000648870.1:ENST00000649116.1:ENST00000649752.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.79458	4.97208	5.14958	0.0493212	0.0207145	0.146207	0.102713
chr14	91221634	91221730	5899573	0	+	0.520833	(0.485,0.523]	chr14	576435	10	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	374	2	4.21548	4.97162	5.72776	0.0026584	1.39296e-5	0.0326974	6.47499e-4
chr6	119242361	119242461	3246210	0	-	0.45	(0.419,0.45]	chr6	314531	371	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	1	111	2	3.79893	4.97157	6.14421	0.0127879	0.00509983	0.0769397	0.0433857
chr5	148392519	148392619	2562854	0	+	0.4	(0.39,0.419]	chr5	254487	26	INTRON	INTRON	FBXO38	ENSG00000145868.17	ENST00000296701.10:ENST00000503613.5:ENST00000340253.10:ENST00000394370.7:ENST00000508326.5:ENST00000509411.5:ENST00000511080.5:ENST00000504971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	110	2	3.74353	4.97151	6.19949	0.0103045	0.00554536	0.0684871	0.0456911
chr2	45482557	45482657	1138206	0	-	0.34	(0.33,0.36]	chr2	124596	51	INTRON	INTRON	SRBD1	ENSG00000068784.13	ENST00000263736.5:ENST00000475073.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.57035	4.971485	5.37262	0.0945416	0.00569729	0.188571	0.046716
chr22	37512733	37512831	7808334	0	-	0.591837	(0.58,1]	chr22	818439	6	INTRON	INTRON	CARD10	ENSG00000100065.15	ENST00000403299.5:ENST00000251973.10:ENST00000494166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	126	2	2.91493	4.97142	7.02791	0.0259506	6.18479e-4	0.116361	0.0145945
chr4	186638650	186638745	2374328	0	-	0.294737	(0.29,0.33]	chr4	237233	14	INTRON	INTRON	FAT1	ENSG00000083857.15	ENST00000441802.7	protein_coding	protein_coding	protein_coding	protein_coding	2	142	2	3.27492	4.971349999999999	6.66778	0.00510923	0.00269181	0.0434253	0.0329086
chr12	1004779	1004879	5150405	0	+	0.38	(0.36,0.39]	chr12	500765	59	INTRON	INTRON	ERC1	ENSG00000082805.21	ENST00000611180.5:ENST00000543086.7:ENST00000360905.9:ENST00000691018.1:ENST00000690948.1:ENST00000542302.6:ENST00000546231.6:ENST00000545318.3:ENST00000347735.10:ENST00000397203.7:ENST00000536573.7:ENST00000690222.1:ENST00000686476.1:ENST00000692909.1:ENST00000592048.5:ENST00000440394.7:ENST00000545948.5:ENST00000589028.6:ENST00000589132.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	4.56926	4.971165	5.37307	0.0361409	0.031369	0.127853	0.127822
chr17	42131306	42131406	6902749	0	-	0.4	(0.39,0.419]	chr17	702051	3	SS5_PROX	SS5_PROX:INTRON	RAB5C	ENSG00000108774.15	ENST00000393860.7:ENST00000346213.9:ENST00000547517.5:ENST00000552162.5:ENST00000546881.1:ENST00000550504.5:ENST00000550406.1:ENST00000550013.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	4.79402	4.971125	5.14823	0.0501234	0.0208208	0.147892	0.102713
chr3	129394095	129394195	1911558	0	-	0.61	(0.58,1]	chr3	194157	3	SS3_PROX	SS3_PROX:INTRON	RPL32P3	ENSG00000251474.7	ENST00000510078.5:ENST00000507287.5:ENST00000687239.1:ENST00000514355.5:ENST00000507238.5:ENST00000515866.5:ENST00000499631.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	96	2	4.04556	4.970485	5.89541	0.0066708	0.00148416	0.0540577	0.0186585
chr14	104873055	104873155	5925942	0	+	0.63	(0.58,1]	chr14	579942	41	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	1	108	2	4.72691	4.97034	5.21377	0.0230012	1.84649e-4	0.102982	0.0042795
chr17	18892561	18892660	6693449	0	+	0.393939	(0.39,0.419]	chr17	672000	23	INTRON	INTRON	PRPSAP2	ENSG00000141127.15	ENST00000610773.4:ENST00000432893.6:ENST00000492129.5:ENST00000419071.6:ENST00000487101.5:ENST00000536323.5:ENST00000412418.5:ENST00000268835.7:ENST00000395656.6:ENST00000455992.6:ENST00000422237.5:ENST00000542013.5:ENST00000574451.5:ENST00000575337.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.56871	4.970215	5.37172	0.0367885	0.0315133	0.129052	0.127889
chrX	135289623	135289721	8116743	0	-	0.408163	(0.39,0.419]	chrX	845606	14	INTRON	INTRON	ZNF75D	ENSG00000186376.15	ENST00000494295.1:ENST00000370766.8:ENST00000370764.1:ENST00000469456.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.56871	4.970215	5.37172	0.0367885	0.0315133	0.129052	0.127889
chr9	129609777	129609876	4250928	0	+	0.707071	(0.58,1]	chr9	404743	2	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	1	98	2	3.72143	4.969975	6.21852	0.00366718	0.00350812	0.0379357	0.0346803
chr3	65448655	65448753	1809942	0	-	0.428571	(0.419,0.45]	chr3	187227	2	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5:ENST00000470990.5:ENST00000479287.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	152	2	3.17699	4.9695800000000006	6.76217	0.00794315	0.00460997	0.0578938	0.0442426
chr2	111475060	111475159	1253393	0	-	0.242424	[0,0.29]	chr2	134923	26	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1:ENST00000673878.1:ENST00000439494.1	lncRNA	lncRNA	lncRNA	lncRNA	0	47	2	4.61749	4.96932	5.32115	0.061376	0.00426525	0.158506	0.0384752
chr20	18686542	18686642	7444298	0	+	0.28	[0,0.29]	chr20	774758	540	INTRON	INTRON	ENSG00000284776:DTD1	ENSG00000284776.1:ENSG00000125821.13	ENST00000618693.4:ENST00000647441.1:ENST00000377452.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.61749	4.96932	5.32115	0.061376	0.00426525	0.158506	0.0384752
chr21	44867626	44867725	7678518	0	-	0.555556	(0.523,0.58]	chr21	802773	16	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	778	2	3.07065	4.9692300000000005	6.86781	0.00253116	2.66118e-5	0.0271264	0.00292888
chr19	2202779	2202879	7188886	0	+	0.63	(0.58,1]	chr19	731579	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	1	105	2	3.39676	4.96908	6.5414	0.0085026	0.00179018	0.0608246	0.0262802
chr9	133854589	133854688	4428944	0	-	0.636364	(0.58,1]	chr9	423304	199	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	1	105	2	3.39676	4.96908	6.5414	0.0085026	0.00179018	0.0608246	0.0262802
chr12	19145145	19145245	5180341	0	+	0.43	(0.419,0.45]	chr12	504123	123	INTRON	INTRON	PLEKHA5	ENSG00000052126.15	ENST00000429027.7:ENST00000540972.5:ENST00000299275.10:ENST00000539256.5:ENST00000538714.5:ENST00000535357.5:ENST00000538034.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	114	2	4.24272	4.969060000000001	5.6954	0.0254103	0.00171002	0.108573	0.0206538
chr11	10098689	10098789	4994546	0	-	0.4	(0.39,0.419]	chr11	483384	542	INTRON	INTRON	SBF2	ENSG00000133812.18	ENST00000692716.1:ENST00000689940.1:ENST00000256190.13:ENST00000689128.1:ENST00000675281.2:ENST00000676387.2:ENST00000676324.2:ENST00000689258.1:ENST00000533770.6:ENST00000688417.1:ENST00000687210.1:ENST00000526353.2:ENST00000693022.1:ENST00000693201.1:ENST00000686079.1:ENST00000688206.1:ENST00000687256.1:ENST00000685217.1:ENST00000693212.1:ENST00000687300.1:ENST00000688739.1:ENST00000690806.1:ENST00000686677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	52	2	4.48504	4.96864	5.45224	0.0364893	0.032783	0.139793	0.122593
chr16	84125108	84125204	6649303	0	-	0.395833	(0.39,0.419]	chr16	665181	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	HSDL1	ENSG00000103160.12	ENST00000219439.9:ENST00000619773.1:ENST00000434463.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	52	2	4.48504	4.96864	5.45224	0.0364893	0.032783	0.139793	0.122593
chr10	131917888	131917988	4616195	0	+	0.56	(0.523,0.58]	chr10	441069	49	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	110	2	3.44013	4.968355	6.49658	0.00938609	0.00424382	0.064735	0.0422099
chr10	103691629	103691729	4757012	0	-	0.49	(0.485,0.523]	chr10	454779	136	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	283	2	4.9543	4.96823	4.98216	0.00139749	1.56524e-4	0.0228636	0.00380429
chr9	71896660	71896760	4315627	0	-	0.38	(0.36,0.39]	chr9	412586	212	INTRON	INTRON	ABHD17B	ENSG00000107362.14	ENST00000377041.6:ENST00000333421.7	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.64834	4.9680599999999995	5.28778	0.0407706	0.0272056	0.135868	0.119337
chr20	35006118	35006210	7550383	0	-	0.673913	(0.58,1]	chr20	788258	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	1	99	2	3.64686	4.968	6.28914	0.00447535	0.00303562	0.0398484	0.0350226
chr16	81551480	81551579	6508808	0	+	0.575758	(0.523,0.58]	chr16	645911	556	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	106	2	3.62427	4.96799	6.31171	0.0060311	0.00594629	0.0506158	0.0484641
chr2	73004273	73004373	1188845	0	-	0.5	(0.485,0.523]	chr2	128846	23	INTRON	INTRON	SFXN5	ENSG00000144040.13	ENST00000272433.7:ENST00000461352.5:ENST00000474528.5:ENST00000411783.5:ENST00000410065.5:ENST00000463277.5:ENST00000416579.5:ENST00000464825.5:ENST00000450185.5:ENST00000442582.1:ENST00000487508.5:ENST00000497144.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	178	2	3.44013	4.96788	6.49563	0.01166	2.29841e-4	0.0735177	0.00498593
chr8	38768395	38768495	3802239	0	+	0.46	(0.45,0.485]	chr8	365828	106	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	106	2	3.79448	4.967835	6.14119	0.00917101	0.00430151	0.064285	0.0387835
chr15	82356973	82357072	6165480	0	+	0.474747	(0.45,0.485]	chr15	606819	12	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	50	2	4.59225	4.96763	5.34301	0.0328801	0.0259502	0.122593	0.116361
chr13	77325973	77326073	5734518	0	-	0.54	(0.523,0.58]	chr13	562331	1	SS5_PROX	SS5_PROX:INTRON	MYCBP2	ENSG00000005810.20	ENST00000683823.1:ENST00000684354.1:ENST00000682321.1:ENST00000695079.1:ENST00000683697.1:ENST00000357337.11:ENST00000544440.7:ENST00000695080.1:ENST00000695081.1:ENST00000695090.1:ENST00000695091.1:ENST00000695094.1:ENST00000695095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	48	2	4.58058	4.96755	5.35452	0.0860403	0.00453096	0.181766	0.0400651
chr2	182732182	182732282	969402	0	+	0.33	(0.29,0.33]	chr2	106399	3	SS3_PROX	SS3_PROX:INTRON	DNAJC10	ENSG00000077232.19	ENST00000679526.1:ENST00000680258.1:ENST00000679491.1:ENST00000680667.1:ENST00000264065.12:ENST00000616986.5:ENST00000680480.1:ENST00000681873.1:ENST00000680060.1:ENST00000681139.1:ENST00000681146.1:ENST00000650903.2:ENST00000680484.1:ENST00000491074.6:ENST00000679884.1:ENST00000537515.5:ENST00000418559.6:ENST00000459930.1:ENST00000444005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	112	2	4.49339	4.96737	5.44135	0.0236557	6.33841e-4	0.105002	0.010303
chr13	112972047	112972147	5655341	0	+	0.37	(0.36,0.39]	chr13	555120	22	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	1	117	2	3.34723	4.967305	6.58738	0.0136148	0.00521906	0.0811697	0.0475638
chr10	75916121	75916221	4525330	0	+	0.57	(0.523,0.58]	chr10	432292	322	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.84569	4.967255	5.08882	0.0610722	0.00834774	0.158506	0.0598672
chr2	131488118	131488214	1272387	0	-	0.541667	(0.523,0.58]	chr2	137287	12	INTRON	INTRON	MZT2A	ENSG00000173272.16	ENST00000427024.5:ENST00000445782.2:ENST00000410036.2:ENST00000309451.7:ENST00000488586.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.84569	4.967255	5.08882	0.0610722	0.00834774	0.158506	0.0598672
chr21	43721691	43721762	7623809	0	+	0.535211	(0.523,0.58]	chr21	796689	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000476084.1:ENST00000470029.5:ENST00000438837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.84569	4.967255	5.08882	0.0610722	0.00834774	0.158506	0.0598672
chr4	6299461	6299560	2010596	0	+	0.575758	(0.523,0.58]	chr4	205141	39	INTRON	INTRON	WFS1	ENSG00000109501.15	ENST00000673991.1:ENST00000503569.5:ENST00000226760.5:ENST00000682275.1:ENST00000506362.2:ENST00000684087.1:ENST00000683395.1:ENST00000673642.1:ENST00000507765.1:ENST00000513395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	4.84569	4.967255	5.08882	0.0610722	0.00834774	0.158506	0.0598672
chr10	18562663	18562763	4642355	0	-	0.42	(0.419,0.45]	chr10	443321	103	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	60	2	4.08324	4.96722	5.8512	0.0727147	0.0201381	0.199502	0.0973365
chr1	1219591	1219689	380382	0	-	0.765306	(0.58,1]	chr1	42840	7	EXON_MRNA	EXON_MRNA:INTRON	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000494748.1:ENST00000478938.1:ENST00000403997.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.62403	4.967195	5.31036	0.0578275	0.00312721	0.154343	0.0311915
chr14	95541573	95541673	5903491	0	+	0.47	(0.45,0.485]	chr14	577056	58	INTRON	INTRON	GLRX5	ENSG00000182512.5	ENST00000553672.1:ENST00000331334.5:ENST00000557731.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.50852	4.967195	5.42587	0.0302873	0.0290571	0.126768	0.116079
chr2	232900861	232900961	1383847	0	-	0.72	(0.58,1]	chr2	147953	1	SS5_PROX	SS5_PROX:INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000416114.3:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.62403	4.967195	5.31036	0.0578275	0.00312721	0.154343	0.0311915
chr9	93618269	93618369	4184072	0	+	0.61	(0.58,1]	chr9	397705	410	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.62403	4.967195	5.31036	0.0578275	0.00312721	0.154343	0.0311915
chr11	70682713	70682813	5061106	0	-	0.58	(0.523,0.58]	chr11	492688	127	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.905	4.967135000000001	5.02927	0.0563605	0.0095202	0.154188	0.0650078
chr3	24161542	24161642	1713132	0	-	0.39	(0.36,0.39]	chr3	177953	87	INTRON	INTRON	THRB	ENSG00000151090.20	ENST00000646209.2:ENST00000396671.7:ENST00000356447.9:ENST00000646432.1:ENST00000643772.1:ENST00000645139.1:ENST00000642307.1:ENST00000644321.1:ENST00000646966.1:ENST00000416420.5:ENST00000280696.9:ENST00000413780.5:ENST00000447875.5:ENST00000453729.6:ENST00000431815.5:ENST00000447414.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.885	4.966965	5.04893	0.0697729	0.0125348	0.167185	0.0765738
chr5	61043623	61043723	2426711	0	+	0.38	(0.36,0.39]	chr5	241902	978	INTRON	INTRON	NDUFAF2	ENSG00000164182.12	ENST00000678452.1:ENST00000677756.1:ENST00000296597.10:ENST00000511107.1:ENST00000677932.1:ENST00000502658.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.885	4.966965	5.04893	0.0697729	0.0125348	0.167185	0.0765738
chr22	28466470	28466570	7779695	0	-	0.36	(0.33,0.36]	chr22	815741	235	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.70894	4.96671	5.22448	0.0798152	0.00791583	0.176933	0.057762
chr3	33088222	33088322	1733037	0	-	0.35	(0.33,0.36]	chr3	179306	106	INTRON	INTRON	GLB1	ENSG00000170266.16	ENST00000399402.7:ENST00000307363.10:ENST00000307377.12:ENST00000482097.5:ENST00000485698.5:ENST00000498537.5:ENST00000415454.1:ENST00000438227.1:ENST00000440656.1:ENST00000464355.1:ENST00000450835.1:ENST00000436768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	4.70894	4.96671	5.22448	0.0798152	0.00791583	0.176933	0.057762
chr6	601021	601121	3078170	0	-	0.32	(0.29,0.33]	chr6	299385	14	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.58769	4.966655	5.34562	0.0806047	0.00501126	0.177452	0.0429092
chr1	17668691	17668791	54898	0	+	0.56	(0.523,0.58]	chr1	5603	37	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	4.7629	4.966295000000001	5.16969	0.0387762	0.0167014	0.131324	0.0917029
chr16	81681716	81681816	6510128	0	+	0.55	(0.523,0.58]	chr16	645979	27	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.7629	4.966295000000001	5.16969	0.0387762	0.0167014	0.131324	0.0917029
chr2	20219506	20219606	1096948	0	-	0.53	(0.523,0.58]	chr2	119640	137	INTRON	INTRON	SDC1	ENSG00000115884.11	ENST00000254351.9:ENST00000381150.5:ENST00000403076.5:ENST00000429035.1:ENST00000482879.5:ENST00000447124.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	4.7629	4.966295000000001	5.16969	0.0387762	0.0167014	0.131324	0.0917029
chr4	3219019	3219113	2004088	0	+	0.553191	(0.523,0.58]	chr4	204561	7	INTRON	INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000510626.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.7629	4.966295000000001	5.16969	0.0387762	0.0167014	0.131324	0.0917029
chr16	85238165	85238265	6515450	0	+	0.61	(0.58,1]	chr16	646377	104	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	48	2	4.58025	4.966195000000001	5.35214	0.0181452	0.0172566	0.0923809	0.0921579
chr9	134355502	134355602	4260978	0	+	0.61	(0.58,1]	chr9	406311	285	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	4.58025	4.966195000000001	5.35214	0.0181452	0.0172566	0.0923809	0.0921579
chr12	15630149	15630248	5378865	0	-	0.434343	(0.419,0.45]	chr12	527374	54	INTRON	INTRON	EPS8	ENSG00000151491.14	ENST00000281172.10:ENST00000543523.5:ENST00000543468.5:ENST00000644374.1:ENST00000646918.1:ENST00000645775.1:ENST00000642939.1:ENST00000646828.1:ENST00000647224.1:ENST00000642278.1:ENST00000646123.1:ENST00000647087.1:ENST00000543612.5:ENST00000540613.5:ENST00000542903.1:ENST00000545610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	305	2	4.59016	4.966195	5.34223	0.00449986	8.4747e-5	0.0436138	0.00242262
chr12	132543619	132543719	5353052	0	+	0.62	(0.58,1]	chr12	523670	153	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.81862	4.966085	5.11355	0.0271806	0.0102696	0.112113	0.0678072
chr19	1999043	1999141	7307784	0	-	0.704082	(0.58,1]	chr19	753493	12	INTRON	INTRON	BTBD2	ENSG00000133243.10	ENST00000255608.9:ENST00000589200.3:ENST00000590646.5:ENST00000587742.5:ENST00000588395.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.81862	4.966085	5.11355	0.0271806	0.0102696	0.112113	0.0678072
chr6	31652393	31652399	3119047	0	-	0.666667	(0.58,1]	chr6	303157	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	BAG6	ENSG00000204463.14	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.2:ENST00000362049.10:ENST00000439687.6:ENST00000437771.5:ENST00000451898.5:ENST00000424480.5:ENST00000441054.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.81862	4.966085	5.11355	0.0271806	0.0102696	0.112113	0.0678072
chr2	36845768	36845867	1119345	0	-	0.414141	(0.39,0.419]	chr2	122323	82	UTR3	UTR3:EXON_MRNA	STRN	ENSG00000115808.12	ENST00000263918.9	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.88366	4.96601	5.04836	0.0707789	0.0126072	0.168159	0.0768036
chr8	133541403	133541501	4085239	0	-	0.5	(0.485,0.523]	chr8	388452	13	INTRON	INTRON	ST3GAL1	ENSG00000008513.16	ENST00000399640.3:ENST00000522652.6:ENST00000521180.5:ENST00000648219.1:ENST00000517668.5:ENST00000518298.5:ENST00000519435.5:ENST00000522873.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.581	4.96598	5.35096	0.085711	0.0047171	0.181766	0.0413976
chr17	12076097	12076196	6680431	0	+	0.464646	(0.45,0.485]	chr17	670598	59	INTRON	INTRON	MAP2K4	ENSG00000065559.15	ENST00000582183.5:ENST00000415385.7:ENST00000602305.5:ENST00000602375.5:ENST00000602811.5:ENST00000353533.10:ENST00000602537.5:ENST00000602686.5:ENST00000538465.7:ENST00000582897.5:ENST00000581941.5:ENST00000579089.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	4.64346	4.96596	5.28846	0.0850039	0.00612862	0.181766	0.0489549
chr9	124894861	124894961	4405593	0	-	0.48	(0.45,0.485]	chr9	419967	40	INTRON	INTRON	GOLGA1	ENSG00000136935.14	ENST00000373555.9:ENST00000475407.5:ENST00000485337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.64346	4.96596	5.28846	0.0850039	0.00612862	0.181766	0.0489549
chr11	8683350	8683436	4794637	0	+	0.360465	(0.36,0.39]	chr11	459611	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL27A	ENSG00000166441.13	ENST00000531978.5:ENST00000530585.5:ENST00000529227.5:ENST00000524496.5:ENST00000314138.11:ENST00000532359.5:ENST00000534599.5:ENST00000530022.5:ENST00000526562.5:ENST00000525981.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.82572	4.9658999999999995	5.10608	0.0751666	0.0111429	0.172839	0.071709
chr20	35343010	35343109	7552864	0	-	0.363636	(0.36,0.39]	chr20	788509	277	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000497717.5:ENST00000443429.5:ENST00000438533.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.82572	4.9658999999999995	5.10608	0.0751666	0.0111429	0.172839	0.071709
chr5	113561981	113562080	2508723	0	+	0.383838	(0.36,0.39]	chr5	249478	4	INTRON	INTRON	YTHDC2	ENSG00000047188.16	ENST00000161863.9	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.82572	4.9658999999999995	5.10608	0.0751666	0.0111429	0.172839	0.071709
chr9	129500527	129500625	4250782	0	+	0.704082	(0.58,1]	chr9	404726	17	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	96	2	3.89258	4.965755	6.03893	0.00503456	0.00229214	0.0464858	0.0253494
chr8	142667598	142667695	4095189	0	-	0.525773	(0.523,0.58]	chr8	389059	7	INTRON	INTRON	JRK	ENSG00000234616.9	ENST00000612905.2:ENST00000615982.4:ENST00000571961.7:ENST00000503272.1:ENST00000591357.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	127	2	3.72301	4.965705	6.2084	0.015164	4.95211e-4	0.0844216	0.00865935
chr14	91220042	91220142	5899556	0	+	0.49	(0.485,0.523]	chr14	576432	2	SS3_PROX	SS3_PROX:INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000522816.1:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.84611	4.965695	5.08528	0.0608067	0.0086528	0.158506	0.0612699
chr20	8452547	8452647	7429793	0	+	0.37	(0.36,0.39]	chr20	773698	805	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	4.94194	4.96568	4.98942	0.064883	0.0141427	0.162218	0.0833845
chr5	107959348	107959448	2735576	0	-	0.37	(0.36,0.39]	chr5	268845	778	INTRON	INTRON	FBXL17	ENSG00000145743.18	ENST00000542267.7:ENST00000496714.2	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.94194	4.96568	4.98942	0.064883	0.0141427	0.162218	0.0833845
chr16	85401831	85401931	6517089	0	+	0.58	(0.523,0.58]	chr16	646391	425	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.23973	4.96565	5.69157	0.0444247	0.0172851	0.153511	0.0897247
chr1	1845679	1845779	384133	0	-	0.5	(0.485,0.523]	chr1	43823	56	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.90542	4.965575	5.02573	0.0561086	0.00985879	0.154188	0.0664239
chr1	226946178	226946278	355654	0	+	0.5	(0.485,0.523]	chr1	40145	52	INTRON	INTRON	COQ8A	ENSG00000163050.18	ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000489044.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.90542	4.965575	5.02573	0.0561086	0.00985879	0.154188	0.0664239
chr1	236844073	236844172	366306	0	+	0.515152	(0.485,0.523]	chr1	41482	51	INTRON	INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1:ENST00000681937.1:ENST00000366576.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	47	2	4.90542	4.965575	5.02573	0.0561086	0.00985879	0.154188	0.0664239
chr15	28217888	28217988	6207150	0	-	0.52	(0.485,0.523]	chr15	611111	17	INTRON	INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.90542	4.965575	5.02573	0.0561086	0.00985879	0.154188	0.0664239
chr22	50711414	50711514	7755299	0	+	0.51	(0.485,0.523]	chr22	812778	4	SS3_PROX	SS3_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.90542	4.965575	5.02573	0.0561086	0.00985879	0.154188	0.0664239
chr3	51665202	51665301	1472192	0	+	0.494949	(0.485,0.523]	chr3	157989	19	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.90542	4.965575	5.02573	0.0561086	0.00985879	0.154188	0.0664239
chrX	9689158	9689254	7844706	0	+	0.510417	(0.485,0.523]	chrX	822468	5	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000645686.1:ENST00000646640.1:ENST00000683056.1:ENST00000647060.1:ENST00000684110.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	4.90542	4.965575	5.02573	0.0561086	0.00985879	0.154188	0.0664239
chr10	79176415	79176514	4533121	0	+	0.565657	(0.523,0.58]	chr10	432438	139	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	129	2	3.83429	4.965535	6.09678	0.012469	6.74499e-4	0.0761905	0.0108081
chr19	4335732	4335831	7312828	0	-	0.474747	(0.45,0.485]	chr19	754660	13	INTRON	INTRON	STAP2	ENSG00000178078.12	ENST00000594605.6:ENST00000600324.5:ENST00000599736.5:ENST00000601482.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.81772	4.9650099999999995	5.1123	0.0458344	0.0167663	0.142336	0.0917029
chr19	48904146	48904246	7280385	0	+	0.46	(0.45,0.485]	chr19	748037	4	SS3_PROX	SS3_PROX:INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000443560.1:ENST00000411700.5:ENST00000451312.5:ENST00000424608.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	4.81772	4.9650099999999995	5.1123	0.0458344	0.0167663	0.142336	0.0917029
chr22	45290426	45290524	7738853	0	+	0.469388	(0.45,0.485]	chr22	811371	9	INTRON	INTRON	UPK3A	ENSG00000100373.10	ENST00000216211.9:ENST00000396082.2	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.81772	4.9650099999999995	5.1123	0.0458344	0.0167663	0.142336	0.0917029
chr1	121539019	121539118	228323	0	+	0.414141	(0.39,0.419]	chr1	25128	2	INTRON	INTRON	EMBP1	ENSG00000231752.7	ENST00000622787.4:ENST00000648011.2:ENST00000618253.1:ENST00000692042.1:ENST00000458200.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	48	2	4.82439	4.96495	5.10551	0.0762206	0.0112089	0.174484	0.071709
chr17	8458428	8458526	6679159	0	+	0.408163	(0.39,0.419]	chr17	670500	32	INTRON	INTRON	NDEL1	ENSG00000166579.16	ENST00000334527.12:ENST00000585098.5:ENST00000380025.8:ENST00000402554.7:ENST00000582277.5:ENST00000581679.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.82439	4.96495	5.10551	0.0762206	0.0112089	0.174484	0.071709
chr3	93971683	93971782	1853159	0	-	0.575758	(0.523,0.58]	chr3	189053	26	INTRON	INTRON	PROS1	ENSG00000184500.16	ENST00000394236.9:ENST00000648853.1:ENST00000650591.1:ENST00000348974.5:ENST00000647936.1:ENST00000407433.6:ENST00000649103.1:ENST00000472684.2:ENST00000648721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.78384	4.96493	5.14602	0.0663135	0.00734367	0.162385	0.0550721
chr7	99381651	99381751	3427413	0	+	0.57	(0.523,0.58]	chr7	331164	38	INTRON	INTRON	ARPC1B	ENSG00000130429.16	ENST00000443222.6:ENST00000414376.6:ENST00000645391.1:ENST00000695607.1:ENST00000455009.6:ENST00000484375.5:ENST00000695608.1:ENST00000418347.6:ENST00000646101.2:ENST00000427217.6:ENST00000451682.5:ENST00000431816.6:ENST00000458033.6:ENST00000417330.6:ENST00000695609.1:ENST00000484600.6:ENST00000429246.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	4.78384	4.96493	5.14602	0.0663135	0.00734367	0.162385	0.0550721
chr17	72554830	72554930	6963859	0	-	0.59	(0.58,1]	chr17	710389	204	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	5	204	2	3.44744	4.964895	6.48235	0.00202884	5.62228e-4	0.0283135	0.00948794
chr12	419632	419731	5148381	0	+	0.474747	(0.45,0.485]	chr12	500517	6	INTRON	INTRON	CCDC77	ENSG00000120647.10	ENST00000540180.5:ENST00000422000.5:ENST00000543504.5:ENST00000540344.5:ENST00000412006.6:ENST00000239830.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.49786	4.964790000000001	5.43172	0.101311	0.00440365	0.196131	0.0393688
chr16	87124543	87124643	6652481	0	-	0.48	(0.45,0.485]	chr16	665579	403	INTRON	INTRON	C16orf95	ENSG00000260456.7	ENST00000562840.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	49	2	4.49786	4.964790000000001	5.43172	0.101311	0.00440365	0.196131	0.0393688
chr2	3290011	3290111	1081007	0	-	0.46	(0.45,0.485]	chr2	117633	73	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	49	2	4.49786	4.964790000000001	5.43172	0.101311	0.00440365	0.196131	0.0393688
chr10	124756945	124757044	4779802	0	-	0.393939	(0.39,0.419]	chr10	456999	8	UTR3	UTR3:EXON_MRNA:INTRON	EEF1AKMT2	ENSG00000203791.15	ENST00000495711.2:ENST00000652548.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.9406	4.964729999999999	4.98886	0.0658437	0.0142222	0.162385	0.0833845
chr22	17672820	17672920	7683799	0	+	0.4	(0.39,0.419]	chr22	803671	166	INTRON	INTRON	BCL2L13	ENSG00000099968.18	ENST00000399781.5:ENST00000399782.5:ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000464649.1:ENST00000493680.5:ENST00000355028.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	4.9406	4.964729999999999	4.98886	0.0658437	0.0142222	0.162385	0.0833845
chrX	139909553	139909653	8119728	0	-	0.4	(0.39,0.419]	chrX	845912	774	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.9406	4.964729999999999	4.98886	0.0658437	0.0142222	0.162385	0.0833845
chr11	70898265	70898365	5063273	0	-	0.29	[0,0.29]	chr11	492740	13	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000618363.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	49	2	4.54061	4.964705	5.3888	0.0235212	0.0183035	0.110758	0.0922556
chr1	204083275	204083375	322152	0	+	0.54	(0.523,0.58]	chr1	36272	47	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1:ENST00000528591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.96197	4.964555	4.96714	0.0521137	0.0108948	0.148503	0.0706366
chr14	19304609	19304705	5928408	0	-	0.53125	(0.523,0.58]	chr14	580404	2	INTRON	INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	47	2	4.96197	4.964555	4.96714	0.0521137	0.0108948	0.148503	0.0706366
chr17	28979785	28979885	6707145	0	+	0.57	(0.523,0.58]	chr17	673570	260	INTRON	INTRON	PIPOX	ENSG00000179761.12	ENST00000580241.5:ENST00000580383.5:ENST00000583215.5:ENST00000578748.6:ENST00000577182.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	47	2	4.96197	4.964555	4.96714	0.0521137	0.0108948	0.148503	0.0706366
chr2	61518417	61518515	1158164	0	-	0.571429	(0.523,0.58]	chr2	126925	36	INTRON	INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000676667.1:ENST00000678263.1:ENST00000678877.1:ENST00000677933.1:ENST00000680228.1:ENST00000677289.1:ENST00000677190.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000476585.5:ENST00000468259.1:ENST00000420673.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.96197	4.964555	4.96714	0.0521137	0.0108948	0.148503	0.0706366
chr2	238352229	238352326	1073451	0	+	0.56701	(0.523,0.58]	chr2	116386	25	INTRON	INTRON	TRAF3IP1	ENSG00000204104.12	ENST00000391993.7:ENST00000373327.5:ENST00000462122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	4.96197	4.964555	4.96714	0.0521137	0.0108948	0.148503	0.0706366
chr5	172947728	172947827	2591584	0	+	0.535354	(0.523,0.58]	chr5	257156	99	INTRON	INTRON	ERGIC1	ENSG00000113719.17	ENST00000393784.8:ENST00000690799.1:ENST00000686615.1:ENST00000684928.1:ENST00000691612.1:ENST00000687901.1:ENST00000689975.1:ENST00000693299.1:ENST00000687702.1:ENST00000685391.1:ENST00000686955.1:ENST00000692557.1:ENST00000686449.1:ENST00000693572.1:ENST00000688069.1:ENST00000523215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.96197	4.964555	4.96714	0.0521137	0.0108948	0.148503	0.0706366
chr14	104721069	104721167	5925637	0	+	0.612245	(0.58,1]	chr14	579884	24	UTR3	UTR3:EXON_MRNA	INF2	ENSG00000203485.14	ENST00000330634.11:ENST00000392634.9:ENST00000675207.1:ENST00000675638.1	protein_coding	protein_coding	protein_coding	protein_coding	1	123	2	4.13566	4.964245	5.79283	0.00472191	8.4246e-4	0.0449204	0.0125912
chr10	132292442	132292542	4782534	0	-	0.45	(0.419,0.45]	chr10	457371	435	INTRON	INTRON	STK32C	ENSG00000165752.17	ENST00000298630.8:ENST00000368622.5:ENST00000368620.2	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.62273	4.964105	5.30548	0.103601	0.00792071	0.197541	0.057762
chr16	85237465	85237565	6515443	0	+	0.58	(0.523,0.58]	chr16	646377	97	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	53	2	4.34118	4.96399	5.5868	0.0372357	0.020474	0.139793	0.0979776
chr5	72242587	72242687	2689356	0	-	0.52	(0.485,0.523]	chr5	265641	5	INTRON	INTRON	MRPS27	ENSG00000113048.18	ENST00000694990.1:ENST00000694989.1:ENST00000522042.2:ENST00000694988.1:ENST00000261413.10:ENST00000513900.6:ENST00000695403.1:ENST00000523654.6:ENST00000694998.1:ENST00000694997.1:ENST00000695298.1:ENST00000694996.1:ENST00000694995.1:ENST00000519143.6:ENST00000694994.1:ENST00000695297.1:ENST00000695296.1:ENST00000694993.1:ENST00000694992.1:ENST00000694991.1:ENST00000694999.1:ENST00000457646.9:ENST00000695404.1:ENST00000508863.6:ENST00000515404.5:ENST00000522404.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	110	2	4.45366	4.963955	5.47425	0.0243396	6.79828e-4	0.106588	0.0108531
chr3	187066606	187066706	1651659	0	+	0.37	(0.36,0.39]	chr3	173706	16	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000676633.1:ENST00000448044.5:ENST00000416235.6:ENST00000448449.1:ENST00000442023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	109	2	3.77418	4.9638	6.15342	0.0108737	0.00513898	0.0707085	0.0435696
chr2	239085131	239085228	1389526	0	-	0.57732000000000006	(0.523,0.58]	chr2	148605	5	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000487617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	103	2	3.98894	4.96379	5.93864	0.0114442	0.00237791	0.0723462	0.026
chr17	82844186	82844286	6819307	0	+	0.54	(0.523,0.58]	chr17	689318	131	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	103	2	3.90605	4.96371	6.02137	0.00992924	0.00295607	0.0671959	0.0300958
chr5	209050	209149	2607672	0	-	0.484848	(0.45,0.485]	chr5	259392	27	INTRON	INTRON	CCDC127	ENSG00000164366.4	ENST00000296824.4:ENST00000441693.2	protein_coding	protein_coding	protein_coding	protein_coding	1	131	2	3.79041	4.963595	6.13678	0.014451	7.46272e-4	0.0823104	0.0115813
chr9	134337238	134337338	4260795	0	+	0.64	(0.58,1]	chr9	406311	102	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	101	2	3.52722	4.9634350000000005	6.39965	0.00611467	0.00241374	0.0489549	0.0309229
chr1	48224895	48224995	120948	0	+	0.63	(0.58,1]	chr1	15164	1	SS5_PROX	SS5_PROX:INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	97	2	3.75733	4.96339	6.16945	0.00387582	0.0033279	0.0401256	0.0325742
chr10	79142274	79142374	4532779	0	+	0.49	(0.485,0.523]	chr10	432432	21	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.78426	4.963369999999999	5.14248	0.0660335	0.00761903	0.162385	0.0561937
chr5	860754	860854	2607962	0	-	0.51	(0.485,0.523]	chr5	259417	98	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	0	47	2	4.78426	4.963369999999999	5.14248	0.0660335	0.00761903	0.162385	0.0561937
chr17	15465960	15466060	6860094	0	-	0.56	(0.523,0.58]	chr17	695067	125	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	166	2	3.30097	4.963285	6.6256	0.00333843	0.0025374	0.0368376	0.0271846
chr10	75493396	75493496	4521092	0	+	0.52	(0.485,0.523]	chr10	432249	418	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	276	2	4.36797	4.963265	5.55856	0.00465099	2.39503e-5	0.0445117	9.57247e-4
chr3	49404116	49404216	1772996	0	-	0.48	(0.45,0.485]	chr3	183715	282	INTRON	INTRON	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1:ENST00000677684.1:ENST00000431929.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	49	2	4.67139	4.963245	5.2551	0.0373953	0.0223378	0.130656	0.108193
chr7	36261124	36261224	3346067	0	+	0.44	(0.419,0.45]	chr7	323698	217	INTRON	INTRON	EEPD1	ENSG00000122547.11	ENST00000242108.9:ENST00000534978.1	protein_coding	protein_coding	protein_coding	protein_coding	4	515	2	4.16363	4.96308	5.76253	0.00305598	2.47847e-5	0.0352301	9.81945e-4
chr1	32767586	32767686	84855	0	+	0.5	(0.485,0.523]	chr1	9827	4	SS3_PROX	SS3_PROX:INTRON	KIAA1522	ENSG00000162522.11	ENST00000401073.7:ENST00000468130.1:ENST00000373481.7:ENST00000294521.7:ENST00000373480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	4.96239	4.963	4.96361	0.0518747	0.0112713	0.148503	0.071709
chr1	157008344	157008444	603829	0	-	0.52	(0.485,0.523]	chr1	71589	218	INTRON	INTRON	ARHGEF11	ENSG00000132694.19	ENST00000368194.8:ENST00000361409.2	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.96239	4.963	4.96361	0.0518747	0.0112713	0.148503	0.071709
chr15	56981859	56981959	6110975	0	+	0.5	(0.485,0.523]	chr15	601587	604	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.96239	4.963	4.96361	0.0518747	0.0112713	0.148503	0.071709
chr19	16874558	16874657	7218131	0	+	0.494949	(0.485,0.523]	chr19	737687	20	INTRON	INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000595541.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.96239	4.963	4.96361	0.0518747	0.0112713	0.148503	0.071709
chr4	8206039	8206123	2014072	0	+	0.5	(0.485,0.523]	chr4	205511	5	UTR3	UTR3:EXON_MRNA:INTRON	SH3TC1	ENSG00000125089.18	ENST00000510763.5:ENST00000508641.2:ENST00000245105.8:ENST00000506360.5:ENST00000502669.5:ENST00000382521.7:ENST00000515682.5:ENST00000457650.7:ENST00000503284.5:ENST00000684698.1:ENST00000684537.1:ENST00000682056.1:ENST00000682862.1:ENST00000507891.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.96239	4.963	4.96361	0.0518747	0.0112713	0.148503	0.071709
chrX	77594143	77594241	8073109	0	-	0.510204	(0.485,0.523]	chrX	842082	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000675732.1:ENST00000623706.3:ENST00000623316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	47	2	4.96239	4.963	4.96361	0.0518747	0.0112713	0.148503	0.071709
chr19	945810	945910	7185304	0	+	0.6	(0.58,1]	chr19	730741	127	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	96	2	3.85993	4.96296	6.06599	0.00477081	0.00251049	0.0450109	0.026941
chr19	33423733	33423833	7365075	0	-	0.29	[0,0.29]	chr19	763415	97	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000590731.6:ENST00000609145.5:ENST00000588719.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	46	2	4.82096	4.96286	5.10476	0.0456837	0.0071055	0.142336	0.0541241
chr16	18519928	18520012	6559082	0	-	0.583333	(0.58,1]	chr16	653699	3	SS3_PROX	SS3_PROX:INTRON	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000381474.7:ENST00000564991.5:ENST00000621364.4:ENST00000622306.5:ENST00000543392.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.29454	4.962859999999999	5.63118	0.0305531	0.0109983	0.126768	0.0708586
chr16	85425621	85425721	6517327	0	+	0.63	(0.58,1]	chr16	646391	663	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.29454	4.962859999999999	5.63118	0.0305531	0.0109983	0.126768	0.0708586
chr1	2160403	2160502	4229	0	+	0.656566	(0.58,1]	chr1	988	38	INTRON	INTRON	PRKCZ	ENSG00000067606.17	ENST00000378567.8:ENST00000400921.6:ENST00000461106.6:ENST00000479263.5:ENST00000478770.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.66416	4.96277	5.26138	0.021217	0.0144381	0.0996078	0.0833845
chr1	109622353	109622453	202630	0	+	0.6	(0.58,1]	chr1	22201	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	AMPD2	ENSG00000116337.20	ENST00000531734.6:ENST00000655992.1:ENST00000474459.6:ENST00000342115.8:ENST00000528667.7:ENST00000667949.2:ENST00000680519.1:ENST00000680192.1:ENST00000531203.6:ENST00000256578.8:ENST00000681246.1:ENST00000525415.2:ENST00000680170.1:ENST00000679880.1:ENST00000679593.1:ENST00000681108.1:ENST00000681132.1:ENST00000679892.1:ENST00000680929.1:ENST00000680531.1:ENST00000680132.1:ENST00000681181.1:ENST00000680820.1:ENST00000680148.1:ENST00000679981.1:ENST00000681496.1:ENST00000681862.1:ENST00000680832.1:ENST00000681834.1:ENST00000681218.1:ENST00000679379.1:ENST00000652975.2:ENST00000486282.7:ENST00000369840.7:ENST00000528270.6:ENST00000663749.1:ENST00000668421.1:ENST00000659122.2:ENST00000358729.9:ENST00000476688.3:ENST00000526301.6:ENST00000527846.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.66416	4.96277	5.26138	0.021217	0.0144381	0.0996078	0.0833845
chr12	132537746	132537845	5352993	0	+	0.585859	(0.58,1]	chr12	523670	94	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.66416	4.96277	5.26138	0.021217	0.0144381	0.0996078	0.0833845
chr19	5818888	5818987	7195575	0	+	0.656566	(0.58,1]	chr19	733105	131	INTRON	INTRON	NRTN	ENSG00000171119.3	ENST00000303212.3	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.66416	4.96277	5.26138	0.021217	0.0144381	0.0996078	0.0833845
chr7	216061	216160	3305815	0	+	0.69697	(0.58,1]	chr7	320161	67	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.66416	4.96277	5.26138	0.021217	0.0144381	0.0996078	0.0833845
chr7	17548857	17548957	3545991	0	-	0.28	[0,0.29]	chr7	342635	248	INTRON	INTRON	LINC02889	ENSG00000236039.3	ENST00000451792.1	lncRNA	lncRNA	lncRNA	lncRNA	0	48	2	4.62442	4.962619999999999	5.30082	0.0212677	0.019938	0.100864	0.0996805
chr13	98330815	98330909	5635545	0	+	0.468085	(0.45,0.485]	chr13	553494	5	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5:ENST00000601361.1:ENST00000595817.5:ENST00000427404.5:ENST00000595380.5:ENST00000596467.5:ENST00000600032.5:ENST00000601853.5:ENST00000596613.5:ENST00000598346.5:ENST00000602171.5:ENST00000602272.5:ENST00000596545.5:ENST00000595366.5:ENST00000601762.5:ENST00000599151.5:ENST00000598698.5:ENST00000601133.5:ENST00000593990.1:ENST00000594657.1:ENST00000457431.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	145	2	3.17326	4.962535	6.75181	0.00683957	0.00308946	0.0525976	0.0354967
chr1	42933263	42933362	457214	0	-	0.515152	(0.485,0.523]	chr1	54976	16	INTRON	INTRON	SLC2A1	ENSG00000117394.24	ENST00000426263.10:ENST00000630287.2:ENST00000675112.1:ENST00000674765.1:ENST00000475162.3:ENST00000625233.2:ENST00000372500.4:ENST00000415851.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	53	2	4.33772	4.9624749999999995	5.58723	0.03818	0.0203514	0.140822	0.0979211
chr16	85434217	85434317	6517413	0	+	0.52	(0.485,0.523]	chr16	646391	749	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.33772	4.9624749999999995	5.58723	0.03818	0.0203514	0.140822	0.0979211
chr21	34964952	34965052	7656601	0	-	0.49	(0.485,0.523]	chr21	801067	716	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000482318.5:ENST00000455571.5:ENST00000475045.6:ENST00000416754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	53	2	4.33772	4.9624749999999995	5.58723	0.03818	0.0203514	0.140822	0.0979211
chr22	46648720	46648820	7744665	0	+	0.5	(0.485,0.523]	chr22	812052	104	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.33772	4.9624749999999995	5.58723	0.03818	0.0203514	0.140822	0.0979211
chr12	132950861	132950961	5542040	0	-	0.42	(0.419,0.45]	chr12	547064	22	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	114	2	4.26269	4.962405	5.66212	0.0266819	0.0016249	0.111563	0.0200276
chr16	81376418	81376518	6507592	0	+	0.45	(0.419,0.45]	chr16	645893	45	INTRON	INTRON	GAN	ENSG00000261609.8	ENST00000648349.2:ENST00000648994.2:ENST00000650388.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.56048	4.9622150000000005	5.36395	0.0407485	0.0337332	0.135868	0.133139
chr1	36249903	36250003	92037	0	+	0.35	(0.33,0.36]	chr1	10759	241	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	1	107	2	3.99628	4.962205	5.92813	0.0135535	0.0027942	0.0793558	0.0289034
chr14	37792714	37792814	5788918	0	+	0.38	(0.36,0.39]	chr14	567176	3	SS5_PROX	SS5_PROX:INTRON	TTC6	ENSG00000139865.17	ENST00000553443.6:ENST00000533625.5:ENST00000476979.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.92735	4.962035	4.99672	0.0604395	0.0160072	0.158506	0.0894586
chr6	48091826	48091926	3146869	0	-	0.53	(0.523,0.58]	chr6	306795	215	INTRON	INTRON	PTCHD4:ENSG00000286811	ENSG00000244694.8:ENSG00000286811.1	ENST00000339488.9:ENST00000398738.3:ENST00000679966.1:ENST00000661865.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	4	191	2	3.24593	4.96174	6.67755	0.00302793	0.0020173	0.0350226	0.023183
chr2	216168043	216168143	1023898	0	+	0.39	(0.36,0.39]	chr2	111645	56	INTRON	INTRON	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	4.56076	4.961435	5.36211	0.103289	0.00643924	0.197541	0.0503748
chr7	17253222	17253322	3326289	0	+	0.38	(0.36,0.39]	chr7	322075	51	INTRON	INTRON	AHR	ENSG00000106546.14	ENST00000642825.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.56076	4.961435	5.36211	0.103289	0.00643924	0.197541	0.0503748
chr3	197515861	197515960	1991546	0	-	0.626263	(0.58,1]	chr3	202753	1	INTRON	INTRON	BDH1	ENSG00000161267.12	ENST00000358186.6:ENST00000392378.6:ENST00000392379.6:ENST00000651856.1:ENST00000441275.5:ENST00000479425.5:ENST00000446746.5:ENST00000477015.5:ENST00000434143.5:ENST00000432819.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	131	2	3.25213	4.961295	6.67046	0.00405239	0.00135763	0.0371518	0.0224546
chr7	17108799	17108899	3324842	0	+	0.41	(0.39,0.419]	chr7	322059	1921	INTRON	INTRON	AHR	ENSG00000106546.14	ENST00000645559.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	48	2	4.92679	4.961085	4.99538	0.0613573	0.0160946	0.158506	0.0896852
chr1	8601902	8602002	393569	0	-	0.51	(0.485,0.523]	chr1	45045	112	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	172	2	3.2216	4.960775	6.69995	0.0172559	1.26446e-4	0.0897247	0.00325863
chr10	18559366	18559466	4642322	0	-	0.42	(0.419,0.45]	chr10	443321	70	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.47684	4.960655	5.44447	0.0389508	0.0364384	0.142578	0.128173
chr2	102127570	102127670	863661	0	+	0.43	(0.419,0.45]	chr2	97787	223	INTRON	INTRON	IL1R1	ENSG00000115594.12	ENST00000452403.5:ENST00000409929.5:ENST00000424272.5:ENST00000409589.5:ENST00000409329.5	protein_coding	protein_coding	protein_coding	protein_coding	1	110	2	3.82602	4.9606	6.09518	0.0138177	0.00478241	0.0803169	0.0415621
chr8	133257163	133257263	4083868	0	-	0.42	(0.419,0.45]	chr8	388265	3	SS3_PROX	SS3_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000517331.5:ENST00000522377.5:ENST00000676444.1:ENST00000676222.1:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	265	2	4.272	4.960520000000001	5.64904	0.00368884	0.00363922	0.0388678	0.0348088
chr19	17146288	17146387	7218909	0	+	0.40404	(0.39,0.419]	chr19	737731	4	INTRON	INTRON	MYO9B	ENSG00000099331.14	ENST00000682292.1:ENST00000595618.5:ENST00000594824.5:ENST00000397274.6:ENST00000595641.5	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.55943	4.96049	5.36155	0.104562	0.00648185	0.19835	0.0503748
chrX	110015452	110015552	7933751	0	+	0.37	(0.36,0.39]	chrX	830380	109	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000471255.5:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.72331	4.96022	5.19713	0.0462258	0.0236929	0.143138	0.111208
chr1	1257908	1258007	380559	0	-	0.535354	(0.523,0.58]	chr1	42886	2	INTRON	INTRON	UBE2J2	ENSG00000160087.21	ENST00000450390.6:ENST00000349431.11:ENST00000347370.6:ENST00000400929.6:ENST00000464036.5:ENST00000360466.6:ENST00000400930.8:ENST00000473215.5:ENST00000435198.5:ENST00000509720.5:ENST00000491779.5:ENST00000466752.5:ENST00000503294.5:ENST00000477894.5:ENST00000471154.1:ENST00000422076.5:ENST00000502382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.71922	4.9601299999999995	5.20104	0.0721601	0.00648051	0.168159	0.0503748
chr17	40031868	40031942	6898941	0	-	0.554054	(0.523,0.58]	chr17	700958	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MED24	ENSG00000008838.21	ENST00000394126.5:ENST00000356271.7:ENST00000394128.7:ENST00000394127.6:ENST00000535508.6:ENST00000501516.7:ENST00000535071.6:ENST00000580885.5:ENST00000578901.1:ENST00000584077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	47	2	4.71922	4.9601299999999995	5.20104	0.0721601	0.00648051	0.168159	0.0503748
chr17	77376598	77376698	6804130	0	+	0.55	(0.523,0.58]	chr17	686756	2	SS5_PROX	SS5_PROX:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1:ENST00000423034.6:ENST00000590059.5:ENST00000587514.1:ENST00000590586.1:ENST00000592407.1:ENST00000427674.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.71922	4.9601299999999995	5.20104	0.0721601	0.00648051	0.168159	0.0503748
chr2	32680521	32680621	751019	0	+	0.54	(0.523,0.58]	chr2	87659	12	INTRON	INTRON	TTC27	ENSG00000018699.13	ENST00000317907.9:ENST00000647819.1:ENST00000454690.1:ENST00000438654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.71922	4.9601299999999995	5.20104	0.0721601	0.00648051	0.168159	0.0503748
chr22	33831843	33831943	7801984	0	-	0.57	(0.523,0.58]	chr22	817639	699	INTRON	INTRON	LARGE1	ENSG00000133424.22	ENST00000397394.8:ENST00000413114.6:ENST00000676070.1:ENST00000674543.1:ENST00000676370.1:ENST00000354992.7:ENST00000402320.6:ENST00000675416.1:ENST00000676132.1:ENST00000674789.1:ENST00000675277.1:ENST00000434071.6:ENST00000432776.6:ENST00000423375.2:ENST00000430220.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.71922	4.9601299999999995	5.20104	0.0721601	0.00648051	0.168159	0.0503748
chr10	18559765	18559865	4642326	0	-	0.42	(0.419,0.45]	chr10	443321	74	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.19215	4.960045	5.72794	0.0617113	0.0242188	0.18013	0.106588
chr13	112871900	112872000	5654391	0	+	0.61	(0.58,1]	chr13	555051	1	SS5_PROX	SS5_PROX:INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000471555.5:ENST00000415301.2:ENST00000419631.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	96	2	4.18386	4.95994	5.73602	0.00904546	9.90719e-4	0.0637469	0.0141138
chr3	10165448	10165548	1406532	0	+	0.35	(0.33,0.36]	chr3	151133	4	SS5_PROX	SS5_PROX:INTRON	IRAK2	ENSG00000134070.5	ENST00000256458.5	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.49588	4.9597750000000005	5.42367	0.033477	0.0299185	0.133139	0.116945
chr2	202655685	202655785	996352	0	+	0.53	(0.523,0.58]	chr2	109362	195	INTRON	INTRON	FAM117B	ENSG00000138439.12	ENST00000392238.3:ENST00000481658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	129	2	3.85203	4.95975	6.06747	0.0120823	7.30845e-4	0.0745767	0.0113963
chr2	91629153	91629253	1217376	0	-	0.45	(0.419,0.45]	chr2	131097	2	SS3_PROX	SS3_PROX:INTRON	LSP1P4	ENSG00000143429.11	ENST00000692025.1:ENST00000423774.3:ENST00000609777.6:ENST00000692653.1:ENST00000608501.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	448	2	4.70451	4.959645	5.21478	0.0016505	1.22138e-4	0.0250898	0.00319013
chr6	144654147	144654247	3023609	0	+	0.39	(0.36,0.39]	chr6	295440	702	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000367526.8	protein_coding	protein_coding	protein_coding	protein_coding	2	146	2	3.54289	4.959625	6.37636	0.00749622	0.00308396	0.0576451	0.0310441
chr7	651836	651936	3524609	0	-	0.57	(0.523,0.58]	chr7	340404	440	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000430040.5:ENST00000414568.5:ENST00000417852.5	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.90222	4.959495	5.01677	0.0482765	0.0125132	0.144601	0.0765738
chr18	32768744	32768844	7143401	0	-	0.46	(0.45,0.485]	chr18	726510	263	INTRON	INTRON	KLHL14	ENSG00000197705.10	ENST00000359358.9:ENST00000358095.4	protein_coding	protein_coding	protein_coding	protein_coding	1	108	2	4.26942	4.95932	5.64922	0.020599	0.00125147	0.0982852	0.0166412
chr16	84125521	84125619	6649308	0	-	0.397959	(0.39,0.419]	chr16	665183	4	INTRON	INTRON	HSDL1	ENSG00000103160.12	ENST00000219439.9:ENST00000434463.7	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.72276	4.959275	5.19579	0.0469937	0.0238104	0.143232	0.111436
chr10	28561131	28561231	4469696	0	+	0.33	(0.29,0.33]	chr10	427649	227	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	47	2	4.72635	4.959255000000001	5.19216	0.0672935	0.00712176	0.163263	0.0541241
chr3	126079231	126079329	1905880	0	-	0.44898	(0.419,0.45]	chr3	193369	3	INTRON	INTRON	SLC41A3	ENSG00000114544.17	ENST00000346785.9:ENST00000360370.9:ENST00000315891.10:ENST00000508835.5:ENST00000507008.5:ENST00000514677.5:ENST00000513723.5:ENST00000514023.5:ENST00000512470.5:ENST00000510651.5:ENST00000514333.5:ENST00000504035.5:ENST00000514891.5:ENST00000509064.5:ENST00000505996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	50	2	4.63955	4.959115	5.27868	0.0457732	0.0293406	0.142336	0.125102
chr11	12814023	12814123	4803042	0	+	0.57	(0.523,0.58]	chr11	460563	492	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.5249	4.959085	5.39327	0.0277354	0.0266135	0.118113	0.112851
chr22	46649118	46649218	7744669	0	+	0.54	(0.523,0.58]	chr22	812052	108	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.5249	4.959085	5.39327	0.0277354	0.0266135	0.118113	0.112851
chr11	70539530	70539630	5059668	0	-	0.58	(0.523,0.58]	chr11	492663	362	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	138	2	3.42151	4.959045	6.49658	0.00424382	0.00333621	0.0422099	0.0326498
chr10	22683834	22683934	4647388	0	-	0.42	(0.419,0.45]	chr10	443564	216	INTRON	INTRON	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000545335.5:ENST00000605011.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	113	2	4.22247	4.958935	5.6954	0.0254103	0.0018006	0.108573	0.0214959
chr16	16088070	16088166	6407401	0	+	0.3125	(0.29,0.33]	chr16	633109	7	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000575422.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	47	2	4.89341	4.95868	5.02395	0.0445554	0.0135896	0.140478	0.0811697
chr4	41033604	41033704	2223596	0	-	0.33	(0.29,0.33]	chr4	224421	3	SS3_PROX	SS3_PROX:INTRON	APBB2	ENSG00000163697.17	ENST00000295974.12:ENST00000508593.6:ENST00000513140.5:ENST00000506352.5:ENST00000509446.5:ENST00000508707.5:ENST00000503264.5:ENST00000508676.5:ENST00000503503.5:ENST00000506999.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.89341	4.95868	5.02395	0.0445554	0.0135896	0.140478	0.0811697
chr6	107176345	107176445	3221998	0	-	0.32	(0.29,0.33]	chr6	312530	212	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.89341	4.95868	5.02395	0.0445554	0.0135896	0.140478	0.0811697
chr17	47124060	47124160	6921673	0	-	0.27	[0,0.29]	chr17	704858	1	SS3_PROX	SS3_PROX:INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000571643.5:ENST00000527547.5:ENST00000526866.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.91809	4.958665	4.99924	0.0347661	0.0107911	0.126529	0.0704469
chr3	195151491	195151590	1981528	0	-	0.252525	[0,0.29]	chr3	201666	46	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000437101.5:ENST00000473200.1:ENST00000429994.5:ENST00000418940.5:ENST00000491138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	46	2	4.91809	4.958665	4.99924	0.0347661	0.0107911	0.126529	0.0704469
chr20	2845125	2845225	7417421	0	+	0.5	(0.485,0.523]	chr20	772627	39	INTRON	INTRON	VPS16	ENSG00000215305.10	ENST00000380469.7:ENST00000380445.8:ENST00000453689.5:ENST00000417508.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.71964	4.958565	5.19749	0.0718646	0.00672953	0.168159	0.0519464
chr6	32165866	32165956	2895744	0	+	0.488889	(0.485,0.523]	chr6	283523	8	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PPT2-EGFL8:EGFL8	ENSG00000258388.7:ENSG00000241404.7	ENST00000428388.6:ENST00000585246.5:ENST00000422437.5:ENST00000453656.6:ENST00000583227.5:ENST00000479001.2:ENST00000421600.2:ENST00000333845.11:ENST00000395512.5:ENST00000432129.1:ENST00000466239.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.71964	4.958565	5.19749	0.0718646	0.00672953	0.168159	0.0519464
chr8	38969872	38969961	3803822	0	+	0.550562	(0.523,0.58]	chr8	366011	2	UTR3	UTR3:EXON_MRNA:INTRON	PLEKHA2	ENSG00000169499.15	ENST00000521746.5:ENST00000616927.4:ENST00000617275.5:ENST00000616834.1:ENST00000518939.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	284	2	4.6117	4.958425	5.30515	0.00509102	0.00120644	0.0433513	0.0210633
chr2	118095818	118095918	882760	0	+	0.37	(0.36,0.39]	chr2	99944	68	INTRON	INTRON	INSIG2	ENSG00000125629.16	ENST00000411929.5:ENST00000245787.9:ENST00000485520.5:ENST00000471186.5:ENST00000467223.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	132	2	2.95428	4.958349999999999	6.96242	0.0305895	0.00268438	0.126768	0.0328854
chr15	78927367	78927436	6336940	0	-	0.536232	(0.523,0.58]	chr15	624692	1	CDS	CDS:UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTSH	ENSG00000103811.18	ENST00000677011.1:ENST00000220166.10:ENST00000676639.1:ENST00000676510.1:ENST00000678727.1:ENST00000679334.1:ENST00000679017.1:ENST00000677810.1:ENST00000676763.1:ENST00000678886.1:ENST00000677921.1:ENST00000676596.1:ENST00000678114.1:ENST00000678487.1:ENST00000649928.2:ENST00000527715.6:ENST00000530010.6:ENST00000676671.1:ENST00000534533.6:ENST00000678283.1:ENST00000678841.1:ENST00000679125.1:ENST00000677316.1:ENST00000678031.1:ENST00000678644.1:ENST00000676808.1:ENST00000677207.1:ENST00000676486.1:ENST00000677238.1:ENST00000678281.1:ENST00000678799.1:ENST00000525807.6:ENST00000676588.1:ENST00000528191.6:ENST00000678817.1:ENST00000676880.1:ENST00000528741.6:ENST00000678415.1:ENST00000679172.1:ENST00000533777.5:ENST00000534237.6:ENST00000677448.1:ENST00000677534.1:ENST00000677367.1:ENST00000678397.1:ENST00000679047.1:ENST00000676865.1:ENST00000677102.1:ENST00000677874.1:ENST00000677254.1:ENST00000677936.1:ENST00000678940.1:ENST00000677789.1:ENST00000615999.5:ENST00000677049.1:ENST00000678033.1:ENST00000679211.1:ENST00000676850.1:ENST00000534268.6:ENST00000529861.6:ENST00000676738.1:ENST00000527138.6:ENST00000677320.1:ENST00000529612.6:ENST00000676668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	49	2	4.60868	4.958315	5.30795	0.0315825	0.0226775	0.120781	0.108193
chr10	68496233	68496333	4704654	0	-	0.45	(0.419,0.45]	chr10	448280	4	SS5_PROX	SS5_PROX:INTRON	SLC25A16	ENSG00000122912.15	ENST00000609923.6:ENST00000265870.7:ENST00000493963.5:ENST00000474927.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	4.87598	4.95801	5.04004	0.0768574	0.0137308	0.174882	0.0814223
chr18	74609512	74609612	7089366	0	+	0.43	(0.419,0.45]	chr18	722412	112	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000582337.5	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.87598	4.95801	5.04004	0.0768574	0.0137308	0.174882	0.0814223
chr19	38033655	38033755	7255534	0	+	0.45	(0.419,0.45]	chr19	743669	41	INTRON	INTRON	SIPA1L3	ENSG00000105738.11	ENST00000222345.11:ENST00000476317.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.87598	4.95801	5.04004	0.0768574	0.0137308	0.174882	0.0814223
chr20	49073493	49073592	7491645	0	+	0.50505	(0.485,0.523]	chr20	781040	4	INTRON	INTRON	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.8987	4.9579450000000005	5.01719	0.0480495	0.0129327	0.144601	0.0778105
chr10	132553758	132553858	4616998	0	+	0.5	(0.485,0.523]	chr10	441139	152	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.52142	4.957555	5.39369	0.0275819	0.0273555	0.119337	0.112782
chr8	97834532	97834632	3876466	0	+	0.49	(0.485,0.523]	chr8	371528	90	INTRON	INTRON	LAPTM4B	ENSG00000104341.17	ENST00000445593.6:ENST00000619747.1:ENST00000521545.7	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.52142	4.957555	5.39369	0.0275819	0.0273555	0.119337	0.112782
chr1	1029130	1029229	1006	0	+	0.666667	(0.58,1]	chr1	166	63	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.3962	4.957165	5.51813	0.0250928	0.013519	0.114418	0.0792526
chr16	85397632	85397732	6517047	0	+	0.71	(0.58,1]	chr16	646391	383	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.3962	4.957165	5.51813	0.0250928	0.013519	0.114418	0.0792526
chr16	85516282	85516382	6518234	0	+	0.64	(0.58,1]	chr16	646391	1570	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.3962	4.957165	5.51813	0.0250928	0.013519	0.114418	0.0792526
chr9	133533070	133533165	4259775	0	+	0.6	(0.58,1]	chr9	406092	1	INTRON	INTRON	ADAMTSL2	ENSG00000197859.11	ENST00000354484.8	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.3962	4.957165	5.51813	0.0250928	0.013519	0.114418	0.0792526
chr5	72178627	72178727	2448158	0	+	0.42	(0.419,0.45]	chr5	244377	618	INTRON	INTRON	MAP1B	ENSG00000131711.15	ENST00000512974.5:ENST00000296755.12:ENST00000513526.6:ENST00000511641.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.81671	4.956944999999999	5.09718	0.08258	0.012235	0.179396	0.0757339
chr7	75477072	75477171	3606082	0	-	0.434343	(0.419,0.45]	chr7	348215	15	INTRON	INTRON	POM121C:ENSG00000242073	ENSG00000272391.6:ENSG00000242073.2	ENST00000615331.5:ENST00000398379.2:ENST00000415277.2	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:transcribed_unprocessed_pseudogene	0	48	2	4.81671	4.956944999999999	5.09718	0.08258	0.012235	0.179396	0.0757339
chr3	197516458	197516558	1991552	0	-	0.52	(0.485,0.523]	chr3	202753	7	INTRON	INTRON	BDH1	ENSG00000161267.12	ENST00000358186.6:ENST00000392378.6:ENST00000392379.6:ENST00000651856.1:ENST00000441275.5:ENST00000479425.5:ENST00000446746.5:ENST00000477015.5:ENST00000434143.5:ENST00000432819.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	4.60518	4.956775	5.30837	0.0314138	0.0233371	0.12069	0.110098
chr12	109450124	109450222	5494355	0	-	0.428571	(0.419,0.45]	chr12	540539	16	UTR3	UTR3:EXON_MRNA	KCTD10	ENSG00000110906.13	ENST00000228495.11:ENST00000540089.5:ENST00000440541.6:ENST00000545759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.9329	4.956720000000001	4.98054	0.0716557	0.0154548	0.168159	0.0869771
chr3	31939571	31939670	1729989	0	-	0.545455	(0.523,0.58]	chr3	179055	202	INTRON	INTRON	OSBPL10	ENSG00000144645.15	ENST00000396556.7:ENST00000438237.6:ENST00000480671.5:ENST00000466604.5:ENST00000479173.1:ENST00000463504.5:ENST00000452791.1:ENST00000465626.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	107	2	3.51663	4.956720000000001	6.39681	0.00782908	0.00509616	0.0574276	0.0467496
chr3	111111909	111112009	1532036	0	+	0.42	(0.419,0.45]	chr3	162838	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NECTIN3	ENSG00000177707.11	ENST00000491525.5:ENST00000461477.5:ENST00000485303.6:ENST00000319792.7:ENST00000486596.5:ENST00000493615.5:ENST00000488016.1:ENST00000470618.1:ENST00000481766.1:ENST00000478327.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.9329	4.956720000000001	4.98054	0.0716557	0.0154548	0.168159	0.0869771
chr2	152490854	152490954	927020	0	+	0.37	(0.36,0.39]	chr2	103058	1548	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.69932	4.95666	5.214	0.0877431	0.00887999	0.183437	0.0618231
chrX	130221577	130221677	8102189	0	-	0.37	(0.36,0.39]	chrX	844940	7	INTRON	INTRON	ZNF280C	ENSG00000056277.16	ENST00000370978.9:ENST00000447817.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.69932	4.95666	5.214	0.0877431	0.00887999	0.183437	0.0618231
chr19	15643706	15643806	7215390	0	+	0.49	(0.485,0.523]	chr19	737134	4	SS3_PROX	SS3_PROX:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	185	2	3.62988	4.956535000000001	6.28319	0.0082163	4.20832e-4	0.0608959	0.00773187
chr21	45479701	45479801	7631071	0	+	0.69	(0.58,1]	chr21	797701	4	SS3_PROX	SS3_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.82753	4.956435000000001	5.08534	0.0427798	0.00549379	0.13762	0.0454065
chr8	727454	727553	3933005	0	-	0.616162	(0.58,1]	chr8	376060	111	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.82753	4.956435000000001	5.08534	0.0427798	0.00549379	0.13762	0.0454065
chr10	79229771	79229871	4533659	0	+	0.59	(0.58,1]	chr10	432457	131	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.88945	4.956295	5.02314	0.0388928	0.00638322	0.131324	0.0501889
chr16	87745213	87745312	6656535	0	-	0.707071	(0.58,1]	chr16	665900	23	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.88945	4.956295	5.02314	0.0388928	0.00638322	0.131324	0.0501889
chr16	89301836	89301936	6659827	0	-	0.67	(0.58,1]	chr16	666657	2	SS3_PROX	SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	131	2	3.95805	4.956295	5.95454	0.0059453	5.0401e-4	0.0506158	0.00880724
chr2	3285221	3285321	1080959	0	-	0.62	(0.58,1]	chr2	117633	25	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.88945	4.956295	5.02314	0.0388928	0.00638322	0.131324	0.0501889
chr2	233167520	233167620	1058301	0	+	0.65	(0.58,1]	chr2	115120	27	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493078.1:ENST00000472517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	45	2	4.88945	4.956295	5.02314	0.0388928	0.00638322	0.131324	0.0501889
chr12	26528851	26528951	5398512	0	-	0.41	(0.39,0.419]	chr12	528527	332	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	2	297	2	4.75303	4.95627	5.15951	0.00300735	1.29063e-4	0.0349316	0.0033047
chr7	11041365	11041456	3320294	0	+	0.362637	(0.36,0.39]	chr7	321831	2	INTRON	INTRON	PHF14	ENSG00000106443.17	ENST00000642461.1:ENST00000634607.2:ENST00000403050.7:ENST00000521747.5:ENST00000423760.6:ENST00000490957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.86249	4.95599	5.04949	0.0563927	0.0181775	0.154188	0.0955836
chr13	113039262	113039361	5656023	0	+	0.343434	(0.33,0.36]	chr13	555163	53	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.65869	4.955805	5.25292	0.0384256	0.0248983	0.131324	0.114418
chr17	242436	242535	6820694	0	-	0.40404	(0.39,0.419]	chr17	689558	80	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000570893.5:ENST00000576001.5:ENST00000570954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.69798	4.95571	5.21344	0.088901	0.00893514	0.183874	0.0620271
chr22	35876671	35876771	7804305	0	-	0.4	(0.39,0.419]	chr22	817785	362	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000359369.8:ENST00000695807.1:ENST00000408983.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.69798	4.95571	5.21344	0.088901	0.00893514	0.183874	0.0620271
chr6	30160229	30160329	3116212	0	-	0.4	(0.39,0.419]	chr6	302316	4	SS5_PROX	SS5_PROX:INTRON	TRIM10	ENSG00000204613.11	ENST00000449742.7:ENST00000376704.3	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.69798	4.95571	5.21344	0.088901	0.00893514	0.183874	0.0620271
chr2	158590639	158590739	936300	0	+	0.24	[0,0.29]	chr2	103407	18	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000421462.5:ENST00000462335.1:ENST00000481115.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	140	2	3.06556	4.95564	6.84572	0.00777136	0.00105248	0.057094	0.0194688
chr3	129845150	129845250	1914284	0	-	0.53	(0.523,0.58]	chr3	194445	57	INTRON	INTRON	TMCC1	ENSG00000172765.18	ENST00000393238.8:ENST00000426664.6:ENST00000648771.1:ENST00000505616.5:ENST00000505924.5:ENST00000513411.5:ENST00000512902.5:ENST00000508869.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	130	2	3.90397	4.95549	6.00701	0.0110124	8.61362e-4	0.0708586	0.0127848
chr9	129502071	129502160	4250798	0	+	0.606742	(0.58,1]	chr9	404729	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1:ENST00000427778.1:ENST00000608669.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	46	2	4.54927	4.9554	5.36153	0.0643046	0.00273899	0.161669	0.028553
chr16	18844829	18844928	6560198	0	-	0.282828	[0,0.29]	chr16	654007	20	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000563448.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	4.70363	4.95538	5.20713	0.0248721	0.0169854	0.10758	0.0923809
chr11	70764967	70765067	5061931	0	-	0.47	(0.45,0.485]	chr11	492701	471	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	132	2	3.86009	4.955345	6.0506	0.0128104	9.38528e-4	0.0770178	0.0135546
chr11	70874420	70874520	5063031	0	-	0.49	(0.485,0.523]	chr11	492728	14	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000645599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	126	2	3.70583	4.955315	6.2048	0.0155717	5.23665e-4	0.0849828	0.0090184
chr4	105797066	105797166	2098125	0	+	0.48	(0.45,0.485]	chr4	213656	353	INTRON	INTRON	GSTCD	ENSG00000138780.15	ENST00000394730.7:ENST00000515279.6:ENST00000515255.5:ENST00000484843.1:ENST00000360505.9:ENST00000394728.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	48	2	4.5725	4.9551549999999995	5.33781	0.0926859	0.0054758	0.188571	0.0454065
chr7	16691878	16691976	3322446	0	+	0.397959	(0.39,0.419]	chr7	321991	16	INTRON	INTRON	BZW2	ENSG00000136261.16	ENST00000415365.5:ENST00000630952.2:ENST00000433922.6:ENST00000437745.5:ENST00000432311.5:ENST00000436868.5:ENST00000258761.8:ENST00000405202.5:ENST00000446596.5:ENST00000407633.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	4.86193	4.95504	5.04815	0.0572698	0.0182739	0.154343	0.0958352
chr16	68319831	68319930	6476840	0	+	0.565657	(0.523,0.58]	chr16	643277	9	INTRON	INTRON	PRMT7	ENSG00000132600.18	ENST00000686904.1:ENST00000562381.7:ENST00000689486.1:ENST00000693200.1:ENST00000685141.1:ENST00000562050.6:ENST00000565745.6:ENST00000685109.1:ENST00000689637.1:ENST00000692867.1:ENST00000693670.1:ENST00000692760.1:ENST00000687654.1:ENST00000441236.3:ENST00000675132.1:ENST00000688470.1:ENST00000691833.1:ENST00000690432.1:ENST00000691804.1:ENST00000691961.1:ENST00000690932.1:ENST00000692632.1:ENST00000687444.1:ENST00000692283.1:ENST00000569571.5:ENST00000692621.1:ENST00000566341.5:ENST00000686053.1:ENST00000692966.1:ENST00000691663.1:ENST00000564050.6:ENST00000449359.7:ENST00000569047.7:ENST00000693309.1:ENST00000690311.1:ENST00000565356.5:ENST00000564441.6:ENST00000563520.5:ENST00000687558.1:ENST00000339507.9:ENST00000688969.1:ENST00000568975.5:ENST00000563562.5:ENST00000561806.5:ENST00000562456.1:ENST00000566430.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	51	2	4.43597	4.9548950000000005	5.47382	0.0313935	0.0244797	0.127822	0.106683
chr6	157429541	157429641	3054325	0	+	0.55	(0.523,0.58]	chr6	297167	469	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.43597	4.9548950000000005	5.47382	0.0313935	0.0244797	0.127822	0.106683
chr17	77482932	77483032	6805211	0	+	0.62	(0.58,1]	chr17	686820	7	EXON_MRNA	EXON_MRNA:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	113	2	3.5406	4.95485	6.3691	0.0154024	1.49225e-4	0.0849828	0.00367368
chr1	1063479	1063566	1372	0	+	0.701149	(0.58,1]	chr1	313	1	EXON_PSEUDO	EXON_PSEUDO:SS5_PROX:INTRON	ENSG00000217801	ENSG00000217801.11	ENST00000688131.1:ENST00000456409.6:ENST00000692821.1:ENST00000394517.7:ENST00000427998.6:ENST00000685011.1:ENST00000692266.1:ENST00000412397.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	155	2	2.91982	4.95465	6.98948	0.0223021	1.96603e-5	0.102226	8.29491e-4
chr2	61536609	61536709	1158361	0	-	0.57	(0.523,0.58]	chr2	126968	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000481214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	147	2	2.98195	4.95439	6.92683	0.010154	0.00188118	0.0677546	0.0270971
chrX	37840751	37840839	8026828	0	-	0.295455	(0.29,0.33]	chrX	837370	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DYNLT3	ENSG00000165169.11	ENST00000378581.7:ENST00000378578.9:ENST00000432389.2	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.42727	4.9541699999999995	5.48107	0.0335282	0.0222022	0.133139	0.101857
chr17	76547203	76547302	6977077	0	-	0.565657	(0.523,0.58]	chr17	712268	9	INTRON	INTRON	CYGB:ENSG00000267546	ENSG00000161544.10:ENSG00000267546.2	ENST00000589145.1:ENST00000589963.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	48	2	4.50593	4.954090000000001	5.40225	0.094303	0.00404292	0.188571	0.0371291
chr1	228150804	228150903	358094	0	+	0.616162	(0.58,1]	chr1	40434	4	INTRON	INTRON	GJC2	ENSG00000198835.4	ENST00000366714.3	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.74346	4.953995	5.16453	0.0249802	0.0121457	0.10758	0.0754623
chr19	1168783	1168874	7305740	0	-	0.67033	(0.58,1]	chr19	753057	2	UTR5	UTR5:EXON_MRNA:INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5:ENST00000587655.2	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.74346	4.953995	5.16453	0.0249802	0.0121457	0.10758	0.0754623
chr2	239289671	239289771	1391605	0	-	0.68	(0.58,1]	chr2	148740	381	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	46	2	4.74346	4.953995	5.16453	0.0249802	0.0121457	0.10758	0.0754623
chr4	143337360	143337460	2136945	0	+	0.65	(0.58,1]	chr4	217045	1	SS5_PROX	SS5_PROX:INTRON	GAB1	ENSG00000109458.9	ENST00000262995.8:ENST00000262994.9:ENST00000514639.5	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.74346	4.953995	5.16453	0.0249802	0.0121457	0.10758	0.0754623
chr16	12943209	12943309	6396044	0	+	0.47	(0.45,0.485]	chr16	632037	260	INTRON	INTRON	SHISA9	ENSG00000237515.9	ENST00000558583.3	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.74641	4.95395	5.16149	0.0427653	0.0193126	0.13762	0.0994526
chr1	2294890	2294990	5161	0	+	0.68	(0.58,1]	chr1	1052	465	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.76284	4.953905	5.14497	0.0471737	0.00474658	0.143232	0.0413976
chr19	33204445	33204541	7240917	0	+	0.677083	(0.58,1]	chr19	741411	7	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	LRP3	ENSG00000130881.14	ENST00000592484.5:ENST00000253193.9:ENST00000590275.1:ENST00000590278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.76284	4.953905	5.14497	0.0471737	0.00474658	0.143232	0.0413976
chr2	240614392	240614492	1075083	0	+	0.59	(0.58,1]	chr2	116637	70	INTRON	INTRON	CAPN10:GPR35	ENSG00000142330.20:ENSG00000178623.13	ENST00000270364.11:ENST00000319838.10:ENST00000403859.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.76284	4.953905	5.14497	0.0471737	0.00474658	0.143232	0.0413976
chr7	65909719	65909819	3378424	0	+	0.59	(0.58,1]	chr7	326095	358	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	1	95	2	3.9245	4.953860000000001	5.98322	0.00562007	0.00209574	0.0493906	0.0238576
chr11	87276552	87276652	4912775	0	+	0.31	(0.29,0.33]	chr11	474136	395	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding	1	103	2	3.93355	4.9537949999999995	5.97404	0.0096909	0.00289464	0.0661757	0.0297681
chr19	37229810	37229908	7252179	0	+	0.44898	(0.419,0.45]	chr19	743320	17	INTRON	INTRON	ZNF383	ENSG00000188283.12	ENST00000586068.5:ENST00000590503.5:ENST00000684119.1:ENST00000589413.5:ENST00000352998.7:ENST00000588371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	4.7549	4.95352	5.15214	0.0888907	0.0109324	0.183874	0.0706366
chr5	55974820	55974920	2662015	0	-	0.44	(0.419,0.45]	chr5	264001	46	INTRON	INTRON	IL6ST	ENSG00000134352.20	ENST00000381298.7:ENST00000336909.9:ENST00000381287.8:ENST00000651614.1:ENST00000503773.6:ENST00000502326.7:ENST00000381294.7:ENST00000381293.6:ENST00000381286.7:ENST00000522633.2:ENST00000577363.1:ENST00000396816.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	4.7549	4.95352	5.15214	0.0888907	0.0109324	0.183874	0.0706366
chr1	228155358	228155457	358140	0	+	0.666667	(0.58,1]	chr1	40434	50	INTRON	INTRON	GJC2	ENSG00000198835.4	ENST00000366714.3	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.94882	4.953480000000001	4.95814	0.0354433	0.0074469	0.127188	0.0553519
chr11	70737088	70737188	5061652	0	-	0.71	(0.58,1]	chr11	492701	192	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.94882	4.953480000000001	4.95814	0.0354433	0.0074469	0.127188	0.0553519
chr17	81577954	81578053	6985074	0	-	0.606061	(0.58,1]	chr17	713759	55	INTRON	INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000374747.9:ENST00000574897.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.94882	4.953480000000001	4.95814	0.0354433	0.0074469	0.127188	0.0553519
chr19	39144619	39144719	7259453	0	+	0.62	(0.58,1]	chr19	744153	183	INTRON	INTRON	PAK4	ENSG00000130669.17	ENST00000602004.1:ENST00000599470.5:ENST00000360442.8:ENST00000321944.8:ENST00000593480.5:ENST00000358301.7:ENST00000597766.1:ENST00000593690.5:ENST00000599386.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.94882	4.953480000000001	4.95814	0.0354433	0.0074469	0.127188	0.0553519
chr21	44810800	44810898	7678241	0	-	0.602041	(0.58,1]	chr21	802721	13	INTRON	INTRON	SUMO3	ENSG00000184900.16	ENST00000479153.1:ENST00000411651.6:ENST00000332859.11:ENST00000397898.7:ENST00000397893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.94882	4.953480000000001	4.95814	0.0354433	0.0074469	0.127188	0.0553519
chr7	2046113	2046213	3530693	0	-	0.7	(0.58,1]	chr7	340995	311	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.94882	4.953480000000001	4.95814	0.0354433	0.0074469	0.127188	0.0553519
chr16	81628188	81628288	6509579	0	+	0.66	(0.58,1]	chr16	645926	61	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	1	113	2	3.61485	4.953455	6.29206	0.0133763	1.89825e-4	0.0790342	0.0043642
chrX	52975456	52975556	8043668	0	-	0.5	(0.485,0.523]	chrX	839375	91	INTRON	INTRON	FAM156A	ENSG00000268350.8	ENST00000611661.4:ENST00000622732.5:ENST00000622323.5:ENST00000612083.5:ENST00000610625.5:ENST00000612915.4:ENST00000615092.4:ENST00000623782.3:ENST00000616592.1:ENST00000619897.4:ENST00000615171.1:ENST00000622430.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.43249	4.95337	5.47425	0.0322299	0.0243396	0.12988	0.106588
chr14	31165598	31165698	5952712	0	-	0.32	(0.29,0.33]	chr14	583296	79	INTRON	INTRON	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000691390.1:ENST00000553957.6:ENST00000687002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	103	2	3.96065	4.95329	5.94593	0.0101801	0.0026983	0.068447	0.0283941
chr22	28445972	28446072	7779490	0	-	0.32	(0.29,0.33]	chr22	815741	30	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	1	103	2	3.96065	4.95329	5.94593	0.0101801	0.0026983	0.068447	0.0283941
chr2	152637281	152637376	928510	0	+	0.526316	(0.523,0.58]	chr2	103186	3	SS3_PROX	SS3_PROX:INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14:ENST00000475377.2	protein_coding	protein_coding	protein_coding	protein_coding	1	103	2	4.11732	4.95328	5.78924	0.0147166	0.00168626	0.0826843	0.0204375
chr7	7746983	7747083	3317000	0	+	0.3	(0.29,0.33]	chr7	321717	77	INTRON	INTRON	UMAD1	ENSG00000219545.12	ENST00000682710.1:ENST00000463725.5:ENST00000638342.1:ENST00000636849.1:ENST00000639343.1:ENST00000639110.1:ENST00000482067.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.51301	4.953175	5.39334	0.0885563	0.00448059	0.183874	0.0398484
chr1	198182374	198182474	310790	0	+	0.47	(0.45,0.485]	chr1	35119	247	INTRON	INTRON	NEK7	ENSG00000151414.15	ENST00000442588.5:ENST00000367385.9:ENST00000538004.5:ENST00000367383.5	protein_coding	protein_coding	protein_coding	protein_coding	1	105	2	4.06374	4.9531600000000005	5.84258	0.0151085	0.00216361	0.0841543	0.0242699
chr15	85686133	85686232	6179291	0	+	0.434343	(0.419,0.45]	chr15	607655	8	INTRON	INTRON	AKAP13	ENSG00000170776.22	ENST00000394518.7:ENST00000361243.6:ENST00000560676.5:ENST00000394510.6:ENST00000560579.5:ENST00000612418.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.91849	4.95308	4.98767	0.0669167	0.0174488	0.16272	0.0928044
chr16	52469868	52469967	6589086	0	-	0.424242	(0.419,0.45]	chr16	658695	9	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.91849	4.95308	4.98767	0.0669167	0.0174488	0.16272	0.0928044
chr11	96244995	96245095	5112586	0	-	0.32	(0.29,0.33]	chr11	496566	1511	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	1	120	2	3.10687	4.953075	6.79928	0.0204009	0.00208507	0.102656	0.0287557
chr17	2329775	2329875	6835103	0	-	0.43	(0.419,0.45]	chr17	691212	3	SS3_PROX	SS3_PROX:INTRON	TSR1	ENSG00000167721.11	ENST00000301364.10:ENST00000575049.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	110	2	3.71446	4.953049999999999	6.19164	0.0118587	0.00621762	0.0740271	0.0496139
chr3	47425080	47425177	1760789	0	-	0.43299	(0.419,0.45]	chr3	181567	2	SS5_PROX	SS5_PROX:INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000648151.1:ENST00000416208.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	134	2	3.50106	4.953005	6.40495	0.0274994	5.72149e-4	0.112782	0.00960229
chr14	104890836	104890932	5926134	0	+	0.53125	(0.523,0.58]	chr14	579999	7	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.68785	4.95256	5.21727	0.0361597	0.0194172	0.127853	0.0994526
chr2	31871943	31872043	1115555	0	-	0.55	(0.523,0.58]	chr2	122032	16	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000422936.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.68785	4.95256	5.21727	0.0361597	0.0194172	0.127853	0.0994526
chr2	237713167	237713265	1070700	0	+	0.561224	(0.523,0.58]	chr2	115988	42	INTRON	INTRON	LRRFIP1	ENSG00000124831.19	ENST00000308482.14:ENST00000465870.5:ENST00000498053.5:ENST00000289175.10:ENST00000244815.9:ENST00000420665.5:ENST00000392000.4:ENST00000473815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	48	2	4.68785	4.95256	5.21727	0.0361597	0.0194172	0.127853	0.0994526
chr10	132554158	132554258	4617002	0	+	0.46	(0.45,0.485]	chr10	441139	156	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.77571	4.952545000000001	5.12938	0.0719884	0.00873194	0.168159	0.0612699
chr2	232899178	232899277	1383830	0	-	0.494949	(0.485,0.523]	chr2	147952	39	INTRON	INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000416114.3:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.50634	4.952515	5.39869	0.0939553	0.00421243	0.188571	0.0380601
chr21	41337280	41337380	7621679	0	+	0.51	(0.485,0.523]	chr21	796323	139	INTRON	INTRON	FAM3B	ENSG00000183844.17	ENST00000479810.6:ENST00000518236.1:ENST00000357985.7:ENST00000398647.7:ENST00000398652.7:ENST00000398646.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.50634	4.952515	5.39869	0.0939553	0.00421243	0.188571	0.0380601
chr12	46436230	46436330	5217549	0	+	0.33	(0.29,0.33]	chr12	506633	236	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000687751.1:ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2:ENST00000666942.1:ENST00000551503.5:ENST00000657145.1	lncRNA	lncRNA	lncRNA	lncRNA	1	105	2	3.63018	4.952345	6.27451	0.00619392	0.00564709	0.0495171	0.0494553
chr19	2335021	2335121	7189471	0	+	0.61	(0.58,1]	chr19	731781	3	SS5_PROX	SS5_PROX:INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	95	2	4.10248	4.95219	5.8019	0.007984	0.0012583	0.0596361	0.0167083
chr12	6338405	6338504	5362091	0	-	0.464646	(0.45,0.485]	chr12	525042	38	INTRON	INTRON	TNFRSF1A	ENSG00000067182.8	ENST00000534885.5:ENST00000162749.7:ENST00000543995.5:ENST00000540022.5:ENST00000539372.5:ENST00000366159.8:ENST00000543048.5:ENST00000440083.6:ENST00000536194.1:ENST00000535958.1:ENST00000538363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.95056	4.95218	4.9538	0.0569772	0.0127826	0.154343	0.0773423
chr3	123218472	123218571	1547649	0	+	0.454545	(0.45,0.485]	chr3	164244	87	INTRON	INTRON	PDIA5:SEC22A	ENSG00000065485.20:ENSG00000121542.12	ENST00000469649.1:ENST00000477063.5:ENST00000466950.5:ENST00000492595.6:ENST00000473494.6:ENST00000481965.6:ENST00000466519.5:ENST00000480631.5:ENST00000491366.5:ENST00000487572.5:ENST00000309934.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.95056	4.95218	4.9538	0.0569772	0.0127826	0.154343	0.0773423
chr16	81625593	81625693	6509553	0	+	0.53	(0.523,0.58]	chr16	645926	35	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	1	126	2	3.72301	4.95215	6.18129	0.015164	5.34061e-4	0.0844216	0.0091384
chr2	175599572	175599672	959342	0	+	0.42	(0.419,0.45]	chr2	105443	46	INTRON	INTRON	ENSG00000289349	ENSG00000289349.1	ENST00000692740.1:ENST00000685522.1	lncRNA	lncRNA	lncRNA	lncRNA	3	432	2	4.38594	4.952135	5.51833	8.27991e-4	3.47458e-4	0.0171182	0.00673552
chr2	121479120	121479220	1262517	0	-	0.39	(0.36,0.39]	chr2	136083	88	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	404	2	4.56363	4.95199	5.34035	9.75252e-4	1.89966e-4	0.0187475	0.0043642
chr3	188825131	188825231	1658533	0	+	0.33	(0.29,0.33]	chr3	173846	645	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000459897.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.65868	4.951915	5.24515	0.0735584	0.00631714	0.17026	0.0501889
chr19	16843443	16843541	7217802	0	+	0.540816	(0.523,0.58]	chr19	737620	11	INTRON	INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000596802.5:ENST00000596638.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.83424	4.951905	5.06957	0.0448011	0.0144272	0.140478	0.0833845
chr5	32157663	32157763	2630491	0	-	0.49	(0.485,0.523]	chr5	261026	134	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	126	2	3.22297	4.9518699999999995	6.68077	0.0348463	1.33825e-4	0.126697	0.00338739
chr8	17968513	17968607	3764928	0	+	0.382979	(0.36,0.39]	chr8	361730	10	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5	protein_coding	protein_coding	protein_coding	protein_coding	1	108	2	3.77418	4.951645	6.12911	0.0113159	0.00513898	0.0722887	0.0435696
chr4	97580512	97580612	2287084	0	-	0.42	(0.419,0.45]	chr4	230052	74	INTRON	INTRON	ENSG00000254044	ENSG00000254044.5	ENST00000521680.5:ENST00000518105.1	lncRNA	lncRNA	lncRNA	lncRNA	0	49	2	4.7145	4.95127	5.18804	0.051668	0.0256236	0.148503	0.115966
chr4	1323198	1323296	1995269	0	+	0.520408	(0.485,0.523]	chr4	203259	3	SS3_PROX	SS3_PROX:INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.65198	4.95123	5.25048	0.0783889	0.0059614	0.175203	0.0479866
chr4	3218924	3219019	2004087	0	+	0.526316	(0.523,0.58]	chr4	204561	6	INTRON	INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000510626.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	124	2	3.49363	4.95114	6.40865	0.0224494	2.80789e-4	0.102751	0.00578259
chr18	74835513	74835613	7091632	0	+	0.32	(0.29,0.33]	chr18	722438	310	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.82544	4.9511	5.07676	0.0412683	0.0156279	0.136301	0.0877396
chr6	70726880	70726980	2938066	0	+	0.33	(0.29,0.33]	chr6	289077	578	INTRON	INTRON	SMAP1	ENSG00000112305.15	ENST00000370452.7:ENST00000316999.9:ENST00000370455.8:ENST00000619054.4	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.82544	4.9511	5.07676	0.0412683	0.0156279	0.136301	0.0877396
chr1	12586137	12586237	402464	0	-	0.56	(0.523,0.58]	chr1	46222	51	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	176	2	3.42503	4.951075	6.47712	0.0120305	2.30436e-4	0.0744167	0.00498593
chr14	68088741	68088841	5861750	0	+	0.49	(0.485,0.523]	chr14	572986	187	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5:ENST00000557045.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	4.68434	4.951015	5.21769	0.0359739	0.0200045	0.127853	0.100864
chr9	97421691	97421791	4194820	0	+	0.52	(0.485,0.523]	chr9	398414	91	INTRON	INTRON	TDRD7	ENSG00000196116.8	ENST00000355295.5	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.68434	4.951015	5.21769	0.0359739	0.0200045	0.127853	0.100864
chr14	68900361	68900461	5999343	0	-	0.58	(0.523,0.58]	chr14	588705	1	SS5_PROX	SS5_PROX:INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	273	2	4.81788	4.950654999999999	5.08343	0.00195151	1.01708e-4	0.0276541	0.00277295
chr16	18844335	18844434	6560193	0	-	0.525253	(0.523,0.58]	chr16	654007	15	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000563448.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	105	2	3.58927	4.95049	6.31171	0.00656975	0.00594629	0.0510026	0.0506158
chr11	70534430	70534530	5059617	0	-	0.51	(0.485,0.523]	chr11	492663	311	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	4.83072	4.950355	5.06999	0.0445854	0.0148956	0.140478	0.0847741
chr17	62537536	62537636	6780141	0	+	0.55	(0.523,0.58]	chr17	683601	8	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	102	2	3.90605	4.95018	5.99431	0.0104033	0.00295607	0.0686837	0.0300958
chr1	147244186	147244285	232456	0	+	0.40404	(0.39,0.419]	chr1	25788	6	INTRON	INTRON	CHD1L	ENSG00000131778.20	ENST00000652587.1:ENST00000652616.1:ENST00000652494.1:ENST00000651207.1:ENST00000650721.1:ENST00000651226.1:ENST00000652161.1:ENST00000651510.1:ENST00000361293.10:ENST00000652278.1:ENST00000369259.4:ENST00000467213.5:ENST00000369258.8:ENST00000622533.4:ENST00000651410.1:ENST00000652486.1:ENST00000652346.1:ENST00000651407.1:ENST00000650828.1:ENST00000651070.1:ENST00000650714.1:ENST00000651420.1:ENST00000652357.1:ENST00000488864.5:ENST00000652188.1:ENST00000651820.1:ENST00000651231.1:ENST00000492728.1:ENST00000651206.1:ENST00000431239.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	145	2	3.46459	4.95013	6.43567	0.00694268	0.00377182	0.0553898	0.0353672
chr12	132521937	132522037	5352833	0	+	0.62	(0.58,1]	chr12	523658	101	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	114	2	3.77454	4.94949	6.12444	0.00981158	3.17437e-4	0.0668871	0.00632787
chr16	89433523	89433623	6661169	0	-	0.59	(0.58,1]	chr16	666753	18	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	95	2	3.85993	4.9494299999999996	6.03893	0.00503456	0.00251049	0.0464858	0.026941
chr10	18573856	18573956	4642467	0	-	0.4	(0.39,0.419]	chr10	443321	215	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.56871	4.949210000000001	5.32971	0.0390381	0.0315133	0.131575	0.127889
chr11	12717222	12717321	4802072	0	+	0.40404	(0.39,0.419]	chr11	460555	413	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000527376.3:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.56871	4.949210000000001	5.32971	0.0390381	0.0315133	0.131575	0.127889
chr13	24181077	24181177	5549223	0	+	0.4	(0.39,0.419]	chr13	547673	182	INTRON	INTRON	SPATA13	ENSG00000182957.16	ENST00000424834.6:ENST00000382108.8:ENST00000466831.2:ENST00000382095.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	50	2	4.56871	4.949210000000001	5.32971	0.0390381	0.0315133	0.131575	0.127889
chr17	80561675	80561775	6809069	0	+	0.56	(0.523,0.58]	chr17	687806	155	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	107	2	4.38556	4.949015	5.51247	0.0230387	8.02365e-4	0.102982	0.0121806
chr2	163728302	163728402	1296245	0	-	0.39	(0.36,0.39]	chr2	139073	1161	INTRON	INTRON	FIGN	ENSG00000182263.14	ENST00000409634.5:ENST00000333129.4:ENST00000482917.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	132	2	3.21593	4.948845	6.68176	0.0398531	2.3726e-4	0.133954	0.0051158
chr10	132711554	132711654	4618583	0	+	0.71	(0.58,1]	chr10	441181	7	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000487614.1:ENST00000498337.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.6951	4.948665	5.20223	0.0521567	0.00411607	0.148503	0.0374453
chr20	36316501	36316601	7469152	0	+	0.65	(0.58,1]	chr20	777805	96	INTRON	INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.6951	4.948665	5.20223	0.0521567	0.00411607	0.148503	0.0374453
chr7	212569	212668	3305780	0	+	0.707071	(0.58,1]	chr7	320161	32	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.6951	4.948665	5.20223	0.0521567	0.00411607	0.148503	0.0374453
chr7	218056	218156	3305835	0	+	0.67	(0.58,1]	chr7	320161	87	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.6951	4.948665	5.20223	0.0521567	0.00411607	0.148503	0.0374453
chr9	124494639	124494738	4402671	0	-	0.666667	(0.58,1]	chr9	419817	11	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.6951	4.948665	5.20223	0.0521567	0.00411607	0.148503	0.0374453
chr9	116607599	116607699	4375692	0	-	0.39	(0.36,0.39]	chr9	418111	1197	INTRON	INTRON	ASTN2	ENSG00000148219.18	ENST00000313400.9:ENST00000361209.6:ENST00000373986.7:ENST00000341734.8:ENST00000288520.9:ENST00000361477.8	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.6317	4.94839	5.26508	0.0950937	0.00795848	0.189021	0.0578938
chr7	105935875	105935975	3444120	0	+	0.29	[0,0.29]	chr7	333440	118	INTRON	INTRON	CDHR3	ENSG00000128536.16	ENST00000470188.5:ENST00000488386.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	99	2	3.83716	4.94822	6.05928	0.00532344	0.00325108	0.0478836	0.03199
chr19	46978091	46978191	7275354	0	+	0.54	(0.523,0.58]	chr19	747275	403	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	107	2	3.47888	4.948105	6.41733	0.00856566	0.00490887	0.0612	0.0457614
chr1	109621603	109621684	202620	0	+	0.580247	(0.58,1]	chr1	22194	2	SS5_PROX	SS5_PROX:INTRON	AMPD2	ENSG00000116337.20	ENST00000531734.6:ENST00000655992.1:ENST00000474459.6:ENST00000342115.8:ENST00000528667.7:ENST00000667949.2:ENST00000680519.1:ENST00000680192.1:ENST00000531203.6:ENST00000256578.8:ENST00000681246.1:ENST00000525415.2:ENST00000680170.1:ENST00000679880.1:ENST00000679593.1:ENST00000681108.1:ENST00000681132.1:ENST00000679892.1:ENST00000680929.1:ENST00000680531.1:ENST00000680132.1:ENST00000681181.1:ENST00000680820.1:ENST00000680148.1:ENST00000679981.1:ENST00000681496.1:ENST00000681862.1:ENST00000680832.1:ENST00000681834.1:ENST00000681218.1:ENST00000679379.1:ENST00000652975.2:ENST00000486282.7:ENST00000369840.7:ENST00000528270.6:ENST00000663749.1:ENST00000668421.1:ENST00000659122.2:ENST00000358729.9:ENST00000476688.3:ENST00000526301.6:ENST00000527846.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.89007	4.94796	5.00585	0.0323732	0.00872525	0.121593	0.0612699
chr11	223065	223163	4967824	0	-	0.622449	(0.58,1]	chr11	480285	8	UTR3	UTR3:EXON_MRNA:INTRON	SIRT3	ENSG00000142082.15	ENST00000382743.9:ENST00000529937.1:ENST00000532837.5:ENST00000525319.5:ENST00000524564.5:ENST00000532956.5:ENST00000529382.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.89007	4.94796	5.00585	0.0323732	0.00872525	0.121593	0.0612699
chr13	113328983	113329082	5753220	0	-	0.656566	(0.58,1]	chr13	564094	25	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.89007	4.94796	5.00585	0.0323732	0.00872525	0.121593	0.0612699
chr15	40108347	40108436	6235243	0	-	0.595506	(0.58,1]	chr15	613050	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BMF	ENSG00000104081.14	ENST00000354670.9:ENST00000558774.5:ENST00000559701.5:ENST00000557870.1:ENST00000560430.1:ENST00000558057.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.89007	4.94796	5.00585	0.0323732	0.00872525	0.121593	0.0612699
chr8	141000779	141000879	4093139	0	-	0.76	(0.58,1]	chr8	388936	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.89007	4.94796	5.00585	0.0323732	0.00872525	0.121593	0.0612699
chr10	96637317	96637416	4740948	0	-	0.454545	(0.45,0.485]	chr10	452496	42	INTRON	INTRON	PIK3AP1	ENSG00000155629.15	ENST00000339364.10:ENST00000371110.6:ENST00000468783.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.7111	4.94774	5.18438	0.0781398	0.00773818	0.175203	0.0568726
chr11	16948681	16948781	5011055	0	-	0.46	(0.45,0.485]	chr11	484333	353	INTRON	INTRON	PLEKHA7	ENSG00000166689.17	ENST00000531066.6:ENST00000355661.7:ENST00000532079.1:ENST00000529213.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.7111	4.94774	5.18438	0.0781398	0.00773818	0.175203	0.0568726
chr15	65456032	65456124	6303899	0	-	0.434783	(0.419,0.45]	chr15	621434	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DPP8	ENSG00000074603.19	ENST00000341861.9:ENST00000300141.11:ENST00000358939.8:ENST00000321147.10:ENST00000558786.5:ENST00000559233.5:ENST00000395652.7:ENST00000558559.1:ENST00000560597.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.69033	4.947705	5.20508	0.0958674	0.00979452	0.189038	0.0664239
chr10	24467685	24467784	4467191	0	+	0.373737	(0.36,0.39]	chr10	427290	5	INTRON	INTRON	KIAA1217	ENSG00000120549.19	ENST00000376462.5:ENST00000376452.7:ENST00000430453.6:ENST00000458595.5:ENST00000376456.8:ENST00000376454.8:ENST00000438429.5:ENST00000696626.1:ENST00000307544.10:ENST00000376451.4:ENST00000396445.5:ENST00000396446.5	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.79458	4.94749	5.1004	0.0526991	0.0207145	0.14912	0.102713
chr10	92566401	92566501	4731277	0	-	0.41	(0.39,0.419]	chr10	451554	68	INTRON	INTRON	IDE	ENSG00000119912.18	ENST00000265986.11:ENST00000679312.1:ENST00000650060.1:ENST00000679089.1:ENST00000677569.1:ENST00000677096.1:ENST00000679222.1:ENST00000676540.1:ENST00000679069.1:ENST00000678977.1:ENST00000679232.1:ENST00000678844.1:ENST00000679174.1:ENST00000678673.1:ENST00000676816.1:ENST00000678715.1:ENST00000677079.1:ENST00000677434.1:ENST00000678248.1:ENST00000478361.6:ENST00000677978.1:ENST00000677196.1:ENST00000677953.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	145	2	3.54079	4.94749	6.35419	0.0079671	0.00311183	0.0596361	0.0311915
chr11	16010156	16010256	5001957	0	-	0.38	(0.36,0.39]	chr11	483980	206	INTRON	INTRON	SOX6	ENSG00000110693.19	ENST00000396356.7:ENST00000655819.1:ENST00000683767.1:ENST00000316399.10:ENST00000528252.5:ENST00000528429.5:ENST00000527619.6:ENST00000527840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.79458	4.94749	5.1004	0.0526991	0.0207145	0.14912	0.102713
chr20	17983279	17983379	7441422	0	+	0.39	(0.36,0.39]	chr20	774379	70	INTRON	INTRON	MGME1	ENSG00000125871.14	ENST00000377710.10:ENST00000377709.1:ENST00000377704.4:ENST00000463219.1:ENST00000467391.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.79458	4.94749	5.1004	0.0526991	0.0207145	0.14912	0.102713
chr3	9468418	9468518	1402842	0	+	0.33	(0.29,0.33]	chr3	150228	13	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000406341.5:ENST00000670063.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000466242.5:ENST00000682236.1:ENST00000421188.1:ENST00000687014.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	173	2	2.66544	4.94749	7.22954	0.0423994	2.78574e-5	0.13762	0.00106743
chr11	72773747	72773847	5070679	0	-	0.41	(0.39,0.419]	chr11	493498	140	INTRON	INTRON	ARAP1:STARD10	ENSG00000186635.15:ENSG00000214530.10	ENST00000359373.9:ENST00000334805.11:ENST00000543304.5:ENST00000538536.5:ENST00000538437.5:ENST00000545082.5:ENST00000537947.5:ENST00000542989.5:ENST00000546314.5:ENST00000535267.1:ENST00000539138.1:ENST00000535054.1:ENST00000536290.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	48	2	4.63037	4.94744	5.26451	0.0963077	0.00800901	0.189169	0.0580954
chr9	105276379	105276479	4205913	0	+	0.36	(0.33,0.36]	chr9	399474	311	INTRON	INTRON	SLC44A1	ENSG00000070214.16	ENST00000374724.1:ENST00000374723.5:ENST00000470972.5:ENST00000374720.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.83538	4.947375	5.05937	0.0679743	0.0112642	0.164413	0.071709
chr2	174208674	174208774	1320541	0	-	0.44	(0.419,0.45]	chr2	141020	663	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	3	182	2	3.52734	4.947235	6.36713	0.00893106	0.00193169	0.0637469	0.0225041
chr1	17597244	17597343	54152	0	+	0.464646	(0.45,0.485]	chr1	5465	84	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.88567	4.94713	5.00859	0.052901	0.0146126	0.14912	0.0837727
chr1	17672187	17672287	54933	0	+	0.47	(0.45,0.485]	chr1	5603	72	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.88567	4.94713	5.00859	0.052901	0.0146126	0.14912	0.0837727
chr10	132756472	132756572	4619037	0	+	0.47	(0.45,0.485]	chr10	441201	26	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.88567	4.94713	5.00859	0.052901	0.0146126	0.14912	0.0837727
chr15	69182342	69182442	6142364	0	+	0.47	(0.45,0.485]	chr15	604176	212	INTRON	INTRON	GLCE	ENSG00000138604.10	ENST00000559798.2:ENST00000261858.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.88567	4.94713	5.00859	0.052901	0.0146126	0.14912	0.0837727
chr9	4715757	4715855	4269928	0	-	0.469388	(0.45,0.485]	chr9	407900	23	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.88567	4.94713	5.00859	0.052901	0.0146126	0.14912	0.0837727
chr19	16679183	16679283	7217537	0	+	0.44	(0.419,0.45]	chr19	737566	175	INTRON	INTRON	TMEM38A	ENSG00000072954.7	ENST00000187762.7:ENST00000595452.1:ENST00000599479.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	4.85365	4.947039999999999	5.04043	0.0625897	0.0197641	0.160305	0.100774
chr2	38365968	38366068	1124226	0	-	0.43	(0.419,0.45]	chr2	123043	65	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000472097.1:ENST00000451483.1:ENST00000416222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.85365	4.947039999999999	5.04043	0.0625897	0.0197641	0.160305	0.100774
chr7	100302122	100302222	3654104	0	-	0.45	(0.419,0.45]	chr7	352085	10	INTRON	INTRON	PMS2P1	ENSG00000078319.11	ENST00000685724.1:ENST00000692351.1:ENST00000685541.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	48	2	4.85365	4.947039999999999	5.04043	0.0625897	0.0197641	0.160305	0.100774
chr13	46575202	46575302	5584126	0	+	0.41	(0.39,0.419]	chr13	550714	211	INTRON	INTRON	LRCH1	ENSG00000136141.15	ENST00000311191.10:ENST00000389797.8:ENST00000443945.6:ENST00000389798.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	4.79402	4.94654	5.09906	0.0535378	0.0208208	0.150319	0.102713
chr13	113052658	113052753	5656162	0	+	0.410526	(0.39,0.419]	chr13	555184	2	UTR3	UTR3:EXON_MRNA:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.79402	4.94654	5.09906	0.0535378	0.0208208	0.150319	0.102713
chr10	103836817	103836916	4758473	0	-	0.474747	(0.45,0.485]	chr10	454819	351	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	1	105	2	4.11205	4.946505	5.78096	0.0166968	0.00190576	0.0884836	0.0222917
chr3	60077626	60077726	1794382	0	-	0.34	(0.33,0.36]	chr3	186802	1	SS3_PROX	SS3_PROX:INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000466788.1:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.73368	4.946495	5.15931	0.043896	0.0216127	0.139792	0.105648
chr4	4438809	4438909	2184979	0	-	0.35	(0.33,0.36]	chr4	221822	3	SS3_PROX	SS3_PROX:INTRON	STX18	ENSG00000168818.10	ENST00000505286.5:ENST00000306200.7:ENST00000503861.5:ENST00000512195.5:ENST00000507908.5:ENST00000512780.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	48	2	4.73368	4.946495	5.15931	0.043896	0.0216127	0.139792	0.105648
chrX	32205025	32205125	8013483	0	-	0.35	(0.33,0.36]	chrX	837040	497	INTRON	INTRON	DMD	ENSG00000198947.18	ENST00000357033.9:ENST00000619831.5:ENST00000378677.6:ENST00000488902.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.73368	4.946495	5.15931	0.043896	0.0216127	0.139792	0.105648
chr4	3366687	3366786	2005103	0	+	0.626263	(0.58,1]	chr4	204663	233	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	154	2	2.91982	4.94647	6.97312	0.0223021	2.07776e-5	0.102226	8.62032e-4
chr6	41721267	41721367	3132606	0	-	0.41	(0.39,0.419]	chr6	305481	155	INTRON	INTRON	TFEB	ENSG00000112561.19	ENST00000358871.6:ENST00000373033.6:ENST00000230323.8:ENST00000677531.1:ENST00000403298.9:ENST00000420312.6:ENST00000424495.2:ENST00000678831.1:ENST00000419396.6:ENST00000416140.6:ENST00000678871.1:ENST00000394283.5:ENST00000679237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	112	2	4.2918	4.946375	5.60095	0.0263614	0.00141198	0.110638	0.0180814
chr1	78133008	78133107	165138	0	+	0.454545	(0.45,0.485]	chr1	18816	67	INTRON	INTRON	GIPC2	ENSG00000137960.6	ENST00000370759.4	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.59225	4.94599	5.29973	0.035042	0.0259502	0.12704	0.116361
chr19	939925	940025	7185245	0	+	0.64	(0.58,1]	chr19	730741	68	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	134	2	3.07041	4.9457249999999995	6.82104	0.00661304	9.78215e-4	0.0512951	0.0187475
chr19	16132011	16132111	7216459	0	+	0.47	(0.45,0.485]	chr19	737378	4	SS3_PROX	SS3_PROX:INTRON	RAB8A	ENSG00000167461.12	ENST00000300935.8:ENST00000586682.1:ENST00000592971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	129	2	3.75426	4.94552	6.13678	0.0153755	7.46272e-4	0.0849828	0.0115813
chr13	113614440	113614539	5659145	0	+	0.59596	(0.58,1]	chr13	555781	30	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	155	2	3.64823	4.94534	6.24245	0.00334087	6.44058e-4	0.0368376	0.0104271
chr17	78121711	78121811	6977933	0	-	0.62	(0.58,1]	chr17	712431	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TMC6	ENSG00000141524.18	ENST00000590602.6:ENST00000592076.5:ENST00000322914.7:ENST00000392467.7:ENST00000306591.11:ENST00000593044.5:ENST00000591436.5:ENST00000589553.5:ENST00000588087.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	109	2	3.20215	4.94507	6.68799	0.0136092	0.00130716	0.0811697	0.0220198
chr3	114467598	114467698	1876468	0	-	0.34	(0.33,0.36]	chr3	190855	129	INTRON	INTRON	ZBTB20	ENSG00000181722.17	ENST00000675478.1:ENST00000357258.8:ENST00000462705.5:ENST00000393785.6:ENST00000471418.5:ENST00000481632.5:ENST00000464560.5:ENST00000676079.1:ENST00000479879.5:ENST00000463890.5:ENST00000486152.6:ENST00000491500.5:ENST00000480832.5:ENST00000492665.5:ENST00000470556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.77355	4.945045	5.11654	0.0735809	0.00998589	0.17026	0.0667545
chr3	136300137	136300235	1574580	0	+	0.336735	(0.33,0.36]	chr3	167002	17	INTRON	INTRON	PCCB	ENSG00000114054.14	ENST00000251654.9:ENST00000490504.5:ENST00000483687.5:ENST00000468777.5:ENST00000462637.5:ENST00000466072.5:ENST00000484181.5:ENST00000482086.5:ENST00000471595.5:ENST00000469217.5:ENST00000478469.5:ENST00000474833.5:ENST00000475214.5:ENST00000473073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.77355	4.945045	5.11654	0.0735809	0.00998589	0.17026	0.0667545
chr6	13659132	13659232	3097566	0	-	0.36	(0.33,0.36]	chr6	300672	3	SS3_PROX	SS3_PROX:INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.77355	4.945045	5.11654	0.0735809	0.00998589	0.17026	0.0667545
chr6	81881145	81881245	3188763	0	-	0.36	(0.33,0.36]	chr6	309343	209	INTRON	INTRON	LINC02542	ENSG00000226453.3	ENST00000667666.1:ENST00000663543.1:ENST00000668303.1:ENST00000660637.1:ENST00000668266.1:ENST00000666226.1:ENST00000418567.2:ENST00000665153.1:ENST00000660534.2:ENST00000684960.1	lncRNA	lncRNA	lncRNA	lncRNA	0	47	2	4.77355	4.945045	5.11654	0.0735809	0.00998589	0.17026	0.0667545
chr15	60493765	60493865	6284444	0	-	0.3	(0.29,0.33]	chr15	619448	56	UTR3	UTR3:EXON_MRNA	RORA	ENSG00000069667.16	ENST00000335670.11	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.33251	4.94494	5.55737	0.0396433	0.0196268	0.143388	0.095549
chr16	85449810	85449910	6517569	0	+	0.41	(0.39,0.419]	chr16	646391	905	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.64779	4.944805	5.24182	0.0441194	0.0273358	0.140174	0.119337
chr18	58318129	58318229	7074212	0	+	0.4	(0.39,0.419]	chr18	721192	17	INTRON	INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000676223.1:ENST00000675147.1:ENST00000592846.5:ENST00000675801.1:ENST00000456986.5:ENST00000675502.1:ENST00000357895.9:ENST00000435432.6:ENST00000586263.5:ENST00000456173.6:ENST00000676251.1:ENST00000676226.1:ENST00000675865.1:ENST00000588494.5:ENST00000675221.1:ENST00000588066.5:ENST00000431212.6:ENST00000586268.5:ENST00000587190.5:ENST00000674636.1:ENST00000674856.1:ENST00000675434.1:ENST00000635997.1:ENST00000674517.1:ENST00000592601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	49	2	4.64779	4.944805	5.24182	0.0441194	0.0273358	0.140174	0.119337
chr9	110169867	110169965	4217881	0	+	0.418367	(0.39,0.419]	chr9	400077	15	UTR3	UTR3:EXON_MRNA	PALM2AKAP2	ENSG00000157654.19	ENST00000374530.7:ENST00000302798.7:ENST00000434623.6:ENST00000374525.5	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.64779	4.944805	5.24182	0.0441194	0.0273358	0.140174	0.119337
chr13	77166954	77167054	5732878	0	-	0.36	(0.33,0.36]	chr13	562096	4	SS3_PROX	SS3_PROX:INTRON	MYCBP2	ENSG00000005810.20	ENST00000683823.1:ENST00000684354.1:ENST00000682321.1:ENST00000695079.1:ENST00000695078.1:ENST00000683697.1:ENST00000357337.11:ENST00000544440.7:ENST00000695080.1:ENST00000695081.1:ENST00000695086.1:ENST00000486679.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	4.93777	4.9447	4.95163	0.0583482	0.0144674	0.155373	0.0833845
chr14	68130829	68130929	5862171	0	+	0.38	(0.36,0.39]	chr14	572986	608	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5:ENST00000557045.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	52	2	4.39677	4.9445049999999995	5.49224	0.0422707	0.0304242	0.149195	0.11845
chr17	339758	339857	6821686	0	-	0.585859	(0.58,1]	chr17	689625	2	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000577079.5:ENST00000573780.5:ENST00000575130.5:ENST00000575634.5	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.29454	4.9445049999999995	5.59447	0.0305531	0.0117666	0.126768	0.0737098
chr18	6130199	6130298	7111016	0	-	0.545455	(0.523,0.58]	chr18	723846	363	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000400105.6:ENST00000317931.12:ENST00000400104.7	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.13061	4.944015	5.75742	0.0533354	0.0155135	0.167062	0.0849828
chr7	75637924	75638023	3607482	0	-	0.545455	(0.523,0.58]	chr7	348440	262	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6	protein_coding	protein_coding	protein_coding	protein_coding	0	56	2	4.13061	4.944015	5.75742	0.0533354	0.0155135	0.167062	0.0849828
chr1	1023956	1024056	954	0	+	0.73	(0.58,1]	chr1	166	11	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.58025	4.943860000000001	5.30747	0.0196049	0.0172566	0.0955413	0.0923809
chr13	112973639	112973739	5655357	0	+	0.68	(0.58,1]	chr13	555120	38	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.58025	4.943860000000001	5.30747	0.0196049	0.0172566	0.0955413	0.0923809
chr19	37012678	37012778	7250862	0	+	0.61	(0.58,1]	chr19	743242	42	INTRON	INTRON	ZNF420	ENSG00000197050.11	ENST00000590332.1:ENST00000587029.5	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.58025	4.943860000000001	5.30747	0.0196049	0.0172566	0.0955413	0.0923809
chr19	39155329	39155427	7259561	0	+	0.653061	(0.58,1]	chr19	744157	31	INTRON	INTRON	PAK4	ENSG00000130669.17	ENST00000602004.1:ENST00000599470.5:ENST00000360442.8:ENST00000321944.8:ENST00000593480.5:ENST00000358301.7:ENST00000593690.5:ENST00000599386.5	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.58025	4.943860000000001	5.30747	0.0196049	0.0172566	0.0955413	0.0923809
chr10	79243738	79243838	4533799	0	+	0.77	(0.58,1]	chr10	432459	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10:ENST00000472035.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	4.18518	4.943545	5.70191	0.0374658	0.00964351	0.139793	0.0659937
chr16	85385438	85385537	6516925	0	+	0.676768	(0.58,1]	chr16	646391	261	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.18518	4.943545	5.70191	0.0374658	0.00964351	0.139793	0.0659937
chr1	27342367	27342467	71327	0	+	0.64	(0.58,1]	chr1	8031	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SYTL1	ENSG00000142765.18	ENST00000618673.4:ENST00000318074.9:ENST00000616558.5:ENST00000483926.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	4.49116	4.94331	5.39546	0.0207449	0.0168207	0.102713	0.0884836
chr17	38874712	38874811	6729618	0	+	0.606061	(0.58,1]	chr17	676433	2	INTRON	INTRON	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000585841.5:ENST00000318008.11:ENST00000443937.7:ENST00000584106.1:ENST00000435347.7:ENST00000419929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.49116	4.94331	5.39546	0.0207449	0.0168207	0.102713	0.0884836
chr21	45431845	45431945	7630581	0	+	0.66	(0.58,1]	chr21	797656	260	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.49116	4.94331	5.39546	0.0207449	0.0168207	0.102713	0.0884836
chr7	47377714	47377814	3587569	0	-	0.6	(0.58,1]	chr7	346036	77	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.49116	4.94331	5.39546	0.0207449	0.0168207	0.102713	0.0884836
chr9	134381456	134381556	4261240	0	+	0.63	(0.58,1]	chr9	406325	9	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2:ENST00000356384.4:ENST00000672570.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	48	2	4.49116	4.94331	5.39546	0.0207449	0.0168207	0.102713	0.0884836
chr10	18557367	18557467	4642302	0	-	0.43	(0.419,0.45]	chr10	443321	50	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.29342	4.9432849999999995	5.59315	0.0526662	0.029494	0.167062	0.116079
chrX	315399	315499	7964849	0	-	0.57	(0.523,0.58]	chrX	834135	1	SS3_PROX	SS3_PROX:INTRON	GTPBP6	ENSG00000178605.13	ENST00000326153.9	protein_coding	protein_coding	protein_coding	protein_coding	2	178	2	2.53372	4.9430250000000004	7.35233	0.0541346	1.60393e-5	0.151733	7.1852e-4
chr22	36010845	36010945	7805650	0	-	0.53	(0.523,0.58]	chr22	817798	493	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.58058	4.942865	5.30515	0.0860403	0.00509102	0.181766	0.0433513
chrX	1417872	1417972	7965658	0	-	0.55	(0.523,0.58]	chrX	834256	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.58058	4.942865	5.30515	0.0860403	0.00509102	0.181766	0.0433513
chr3	13375003	13375103	1692599	0	-	0.22	[0,0.29]	chr3	176731	1	SS5_PROX	SS5_PROX:INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000420141.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.77872	4.942825	5.10693	0.0292928	0.0145383	0.116079	0.0836469
chr19	4338014	4338114	7312851	0	-	0.48	(0.45,0.485]	chr19	754661	4	SS5_PROX	SS5_PROX:INTRON	STAP2	ENSG00000178078.12	ENST00000594605.6:ENST00000600324.5:ENST00000599736.5:ENST00000601482.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.41963	4.942605	5.46558	0.0355247	0.0273644	0.137983	0.112372
chr3	149608227	149608327	1940703	0	-	0.31	(0.29,0.33]	chr3	197491	321	INTRON	INTRON	WWTR1	ENSG00000018408.15	ENST00000465804.5:ENST00000360632.8:ENST00000467467.5:ENST00000479238.1	protein_coding	protein_coding	protein_coding	protein_coding	1	122	2	3.48513	4.942385	6.39964	0.0216689	3.26144e-4	0.100615	0.00644787
chr19	7907264	7907364	7199676	0	+	0.6	(0.58,1]	chr19	734084	3	INTRON	INTRON	MAP2K7	ENSG00000076984.18	ENST00000397981.7:ENST00000397979.4:ENST00000468058.1:ENST00000397983.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	152	2	3.50574	4.94198	6.37822	0.00252415	0.00100226	0.031696	0.0142443
chr10	79245236	79245336	4533814	0	+	0.57	(0.523,0.58]	chr10	432461	11	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10:ENST00000472035.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.7629	4.9417	5.1205	0.0416463	0.0167014	0.136301	0.0917029
chr7	713889	713986	3525238	0	-	0.57732000000000006	(0.523,0.58]	chr7	340440	8	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000537384.6:ENST00000403562.5:ENST00000417852.5:ENST00000488474.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.7629	4.9417	5.1205	0.0416463	0.0167014	0.136301	0.0917029
chr18	49046201	49046301	7158123	0	-	0.46	(0.45,0.485]	chr18	727833	16	INTRON	INTRON	DYM	ENSG00000141627.14	ENST00000675505.1:ENST00000269445.10:ENST00000442713.6:ENST00000577734.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.49786	4.941695	5.38553	0.101311	0.00490471	0.196131	0.0422077
chr22	42946047	42946134	7823590	0	-	0.45977	(0.45,0.485]	chr22	820618	3	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000337959.8:ENST00000263246.8:ENST00000407585.5:ENST00000403744.7:ENST00000402229.5:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5:ENST00000453079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.49786	4.941695	5.38553	0.101311	0.00490471	0.196131	0.0422077
chr6	160060717	160060817	3066210	0	+	0.48	(0.45,0.485]	chr6	298034	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.49786	4.941695	5.38553	0.101311	0.00490471	0.196131	0.0422077
chr16	81624795	81624894	6509545	0	+	0.424242	(0.419,0.45]	chr16	645926	27	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	1	133	2	3.50106	4.941599999999999	6.38214	0.0274994	6.07209e-4	0.112782	0.0100293
chr21	43919815	43919915	7624978	0	+	0.5	(0.485,0.523]	chr21	796899	30	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.581	4.941295	5.30159	0.085711	0.00529578	0.181766	0.044517
chr9	130845890	130845989	4255549	0	+	0.50505	(0.485,0.523]	chr9	405266	100	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4:ENST00000318560.6	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.581	4.941295	5.30159	0.085711	0.00529578	0.181766	0.044517
chr3	9759286	9759384	1403622	0	+	0.438776	(0.419,0.45]	chr3	150411	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	OGG1	ENSG00000114026.22	ENST00000302036.11:ENST00000349503.9:ENST00000449570.6:ENST00000302008.12:ENST00000383826.9:ENST00000426518.5:ENST00000352937.5:ENST00000602976.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	109	2	3.71446	4.94129	6.16812	0.0123115	0.00621762	0.0756356	0.0496139
chr16	89298468	89298568	6659790	0	-	0.66	(0.58,1]	chr16	666648	63	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	154	2	2.87663	4.94114	7.00565	0.0241649	1.8613e-5	0.106588	8.01738e-4
chr14	54648783	54648883	5820261	0	+	0.45	(0.419,0.45]	chr14	569049	803	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	51	2	4.47684	4.940805	5.40477	0.0389508	0.0385125	0.142578	0.131324
chr5	177038825	177038925	2597318	0	+	0.42	(0.419,0.45]	chr5	257833	152	INTRON	INTRON	ZNF346	ENSG00000113761.12	ENST00000512315.5:ENST00000358149.8:ENST00000506693.5:ENST00000503425.5:ENST00000508155.5:ENST00000511834.5:ENST00000503039.1:ENST00000513587.5:ENST00000510933.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	51	2	4.47684	4.940805	5.40477	0.0389508	0.0385125	0.142578	0.131324
chr16	89314772	89314870	6659961	0	-	0.591837	(0.58,1]	chr16	666672	8	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.62403	4.940670000000001	5.25731	0.0578275	0.00358178	0.154343	0.0342681
chr11	378025	378124	4784080	0	+	0.585859	(0.58,1]	chr11	457781	3	INTRON	INTRON	B4GALNT4	ENSG00000182272.12	ENST00000329962.11	protein_coding	protein_coding	protein_coding	protein_coding	1	114	2	3.8171	4.940519999999999	6.06394	0.0090206	3.80904e-4	0.0637469	0.00721291
chr13	98015229	98015329	5633546	0	+	0.48	(0.45,0.485]	chr13	553410	3	SS3_PROX	SS3_PROX:INTRON	IPO5	ENSG00000065150.21	ENST00000651721.2:ENST00000261574.10:ENST00000357602.7:ENST00000490680.5:ENST00000469360.5:ENST00000491555.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	4.64346	4.940405	5.23735	0.0850039	0.00687715	0.181766	0.0526888
chr14	63505726	63505826	5992596	0	-	0.47	(0.45,0.485]	chr14	587804	515	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	47	2	4.64346	4.940405	5.23735	0.0850039	0.00687715	0.181766	0.0526888
chr12	132532071	132532171	5352936	0	+	0.65	(0.58,1]	chr12	523670	37	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	3	155	2	2.96742	4.94039	6.91336	0.00483213	7.98131e-4	0.0418176	0.0167692
chr10	18562963	18563063	4642358	0	-	0.35	(0.33,0.36]	chr10	443321	106	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.102	4.9403749999999995	5.77875	0.0642879	0.0172683	0.184676	0.0897247
chr11	96068298	96068398	5110818	0	-	0.36	(0.33,0.36]	chr11	496560	762	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6:ENST00000618849.1	protein_coding	protein_coding	protein_coding	protein_coding	0	57	2	4.102	4.9403749999999995	5.77875	0.0642879	0.0172683	0.184676	0.0897247
chr9	6923502	6923601	4116613	0	+	0.353535	(0.33,0.36]	chr9	391891	299	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000438023.5:ENST00000381306.7:ENST00000381309.8:ENST00000543771.5:ENST00000496464.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.70894	4.94023	5.17152	0.0798152	0.00887848	0.176933	0.0618231
chr16	89124515	89124614	6523022	0	+	0.484848	(0.45,0.485]	chr16	647012	18	INTRON	INTRON	ACSF3	ENSG00000176715.17	ENST00000317447.9:ENST00000614302.5:ENST00000540697.5:ENST00000406948.7:ENST00000378345.8:ENST00000542688.5:ENST00000649953.1:ENST00000544543.5:ENST00000562204.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	4.67139	4.940225	5.20906	0.0399616	0.0223378	0.133954	0.108193
chr2	73267466	73267561	1190603	0	-	0.463158	(0.45,0.485]	chr2	129026	4	INTRON	INTRON	FBXO41	ENSG00000163013.12	ENST00000295133.9:ENST00000520530.3:ENST00000521871.5	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.67139	4.940225	5.20906	0.0399616	0.0223378	0.133954	0.108193
chr16	57374022	57374120	6466004	0	+	0.489796	(0.485,0.523]	chr16	641365	10	INTRON	INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.75939	4.940155	5.12092	0.0414411	0.0172254	0.136301	0.0923809
chr1	226944179	226944279	355634	0	+	0.64	(0.58,1]	chr1	40145	32	INTRON	INTRON	COQ8A	ENSG00000163050.18	ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000489044.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	112	2	3.61485	4.940145	6.26544	0.0133763	2.06156e-4	0.0790342	0.00461335
chr10	79174917	79175016	4533106	0	+	0.59596	(0.58,1]	chr10	432438	124	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.81862	4.93966	5.0607	0.029633	0.0102696	0.116079	0.0678072
chr10	103719177	103719277	4757292	0	-	0.62	(0.58,1]	chr10	454791	257	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.81862	4.93966	5.0607	0.029633	0.0102696	0.116079	0.0678072
chr11	64271412	64271512	5049352	0	-	0.6	(0.58,1]	chr11	490332	4	SS5_PROX	SS5_PROX:INTRON	BAD	ENSG00000002330.14	ENST00000309032.8:ENST00000394532.7:ENST00000544785.1:ENST00000394531.3:ENST00000493798.1:ENST00000492141.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.81862	4.93966	5.0607	0.029633	0.0102696	0.116079	0.0678072
chr11	111936846	111936945	4940344	0	+	0.656566	(0.58,1]	chr11	476273	66	INTRON	INTRON	DIXDC1	ENSG00000150764.14	ENST00000529225.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.81862	4.93966	5.0607	0.029633	0.0102696	0.116079	0.0678072
chr14	104892775	104892875	5926154	0	+	0.71	(0.58,1]	chr14	580000	4	SS3_PROX	SS3_PROX:INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.81862	4.93966	5.0607	0.029633	0.0102696	0.116079	0.0678072
chr17	17772735	17772835	6689763	0	+	0.59	(0.58,1]	chr17	671344	482	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.81862	4.93966	5.0607	0.029633	0.0102696	0.116079	0.0678072
chr17	80274696	80274795	6807311	0	+	0.666667	(0.58,1]	chr17	687364	9	INTRON	INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000319921.4	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.81862	4.93966	5.0607	0.029633	0.0102696	0.116079	0.0678072
chr19	1288296	1288395	7186887	0	+	0.69697	(0.58,1]	chr19	731132	16	INTRON	INTRON	EFNA2	ENSG00000099617.4	ENST00000215368.4	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.81862	4.93966	5.0607	0.029633	0.0102696	0.116079	0.0678072
chr21	45450925	45451025	7630772	0	+	0.69	(0.58,1]	chr21	797656	451	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.81862	4.93966	5.0607	0.029633	0.0102696	0.116079	0.0678072
chr7	215961	216061	3305814	0	+	0.71	(0.58,1]	chr7	320161	66	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.81862	4.93966	5.0607	0.029633	0.0102696	0.116079	0.0678072
chr3	71412859	71412959	1829577	0	-	0.35	(0.33,0.36]	chr3	188242	522	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000649145.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	106	2	4.06936	4.9396249999999995	5.80989	0.0164265	0.00231927	0.0877406	0.0255753
chr18	2684605	2684705	7001380	0	+	0.28	[0,0.29]	chr18	715609	101	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	4.62442	4.939579999999999	5.25474	0.02298	0.019938	0.102982	0.100864
chr1	43596654	43596753	107417	0	+	0.565657	(0.523,0.58]	chr1	13240	37	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	3	164	2	3.10284	4.93949	6.77614	0.00432553	0.00251197	0.0389438	0.031696
chr11	112228765	112228857	4942139	0	+	0.380435	(0.36,0.39]	chr11	476566	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PTS	ENSG00000150787.8	ENST00000528679.5:ENST00000525645.1:ENST00000531673.5:ENST00000280362.8:ENST00000525803.1:ENST00000524931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	107	2	3.9606	4.93944	5.91828	0.0158902	0.00326569	0.0859576	0.0321244
chr10	75700862	75700962	4523172	0	+	0.42	(0.419,0.45]	chr10	432271	529	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.62273	4.939439999999999	5.25615	0.103601	0.00879729	0.197541	0.0615125
chr5	93588944	93589041	2482665	0	+	0.42268	(0.419,0.45]	chr5	247303	1	INTRON	INTRON	NR2F1	ENSG00000175745.14	ENST00000327111.8:ENST00000615873.1:ENST00000647447.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.62273	4.939439999999999	5.25615	0.103601	0.00879729	0.197541	0.0615125
chr11	102445238	102445338	5114481	0	-	0.28	[0,0.29]	chr11	496626	427	INTRON	INTRON	TMEM123	ENSG00000152558.15	ENST00000361236.7:ENST00000398136.7:ENST00000532161.5:ENST00000528969.5:ENST00000529492.5:ENST00000525577.5:ENST00000531103.5:ENST00000526676.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	102	2	3.52843	4.939075	6.34972	0.00712139	0.00298169	0.0541241	0.0347875
chr16	4374187	4374287	6377884	0	+	0.63	(0.58,1]	chr16	630571	18	INTRON	INTRON	VASN	ENSG00000168140.5	ENST00000304735.4	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.66416	4.938965	5.21377	0.0230012	0.0144381	0.102982	0.0833845
chr16	67966552	67966652	6610215	0	-	0.67	(0.58,1]	chr16	661571	4	SS5_PROX	SS5_PROX:INTRON	SLC12A4	ENSG00000124067.17	ENST00000422611.6:ENST00000316341.8:ENST00000572037.5:ENST00000541864.6:ENST00000570802.5:ENST00000576616.5:ENST00000573023.6:ENST00000576377.1:ENST00000571299.5:ENST00000572010.5:ENST00000576462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.66416	4.938965	5.21377	0.0230012	0.0144381	0.102982	0.0833845
chr18	80033350	80033450	7182843	0	-	0.7	(0.58,1]	chr18	730351	1	SS5_PROX	SS5_PROX:INTRON	TXNL4A	ENSG00000141759.15	ENST00000585474.5:ENST00000592957.1:ENST00000589926.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.66416	4.938965	5.21377	0.0230012	0.0144381	0.102982	0.0833845
chr18	58045921	58046018	7071458	0	+	0.556701	(0.523,0.58]	chr18	721081	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	385	2	4.60608	4.93893	5.27178	0.00122035	5.66681e-5	0.0211739	0.00179875
chr1	1053493	1053579	1300	0	+	0.662791	(0.58,1]	chr1	285	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	176	2	2.80919	4.93891	7.06863	0.00513123	5.64522e-4	0.0435193	0.0138715
chr13	97368950	97369050	5632281	0	+	0.4	(0.39,0.419]	chr13	553226	20	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000449284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	108	2	4.07846	4.93858	5.7987	0.0195328	0.00244164	0.0955413	0.0263656
chr15	82485114	82485214	6340055	0	-	0.36	(0.33,0.36]	chr15	625050	68	INTRON	INTRON	GOLGA2P10	ENSG00000255769.7	ENST00000618004.4:ENST00000614347.4:ENST00000618267.4:ENST00000612379.4:ENST00000619738.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	49	2	4.57958	4.93856	5.29754	0.0360263	0.0288057	0.127853	0.123764
chr9	104829736	104829834	4361424	0	-	0.336735	(0.33,0.36]	chr9	416348	2	INTRON	INTRON	ABCA1	ENSG00000165029.17	ENST00000374736.8:ENST00000678995.1:ENST00000494467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.57958	4.93856	5.29754	0.0360263	0.0288057	0.127853	0.123764
chr19	56645167	56645267	7295370	0	+	0.42	(0.419,0.45]	chr19	751256	2	SS3_PROX	SS3_PROX:INTRON	SMIM17	ENSG00000268182.6	ENST00000598409.6:ENST00000600547.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.78575	4.93854	5.09133	0.0586308	0.0224633	0.155565	0.108193
chr9	101305214	101305314	4204300	0	+	0.45	(0.419,0.45]	chr9	399145	186	INTRON	INTRON	PLPPR1	ENSG00000148123.15	ENST00000374874.8:ENST00000395056.2:ENST00000463206.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.78575	4.93854	5.09133	0.0586308	0.0224633	0.155565	0.108193
chr1	43596062	43596161	107411	0	+	0.535354	(0.523,0.58]	chr1	13240	31	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	1	125	2	3.72301	4.93834	6.15367	0.015164	5.76607e-4	0.0844216	0.00963379
chr7	155714128	155714227	3519227	0	+	0.545455	(0.523,0.58]	chr7	339826	23	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3:ENST00000486747.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	49	2	4.5249	4.93807	5.35124	0.0295772	0.0266135	0.118113	0.116079
chr12	26649092	26649192	5399735	0	-	0.36	(0.33,0.36]	chr12	528625	167	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	4	454	2	4.62825	4.93806	5.24787	9.81442e-4	6.9259e-5	0.0187972	0.00208717
chr12	46757233	46757333	5220767	0	+	0.49	(0.485,0.523]	chr12	506670	1048	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2	lncRNA	lncRNA	lncRNA	lncRNA	1	128	2	3.8717800000000002	4.937595	6.00341	0.0116212	9.07333e-4	0.0732782	0.0132726
chr11	3812023	3812122	4788185	0	+	0.535354	(0.523,0.58]	chr11	458830	2	INTRON	INTRON	PGAP2	ENSG00000148985.20	ENST00000528216.5:ENST00000300730.10:ENST00000396986.6:ENST00000532535.5:ENST00000396993.8:ENST00000465237.6:ENST00000477358.6:ENST00000532523.5:ENST00000459679.5:ENST00000464229.5:ENST00000490830.5:ENST00000464261.5:ENST00000464906.6:ENST00000524661.5:ENST00000485602.5:ENST00000475884.5:ENST00000489571.5:ENST00000464441.5:ENST00000532017.5:ENST00000465307.6:ENST00000493547.6:ENST00000495026.5:ENST00000534498.1:ENST00000396991.6:ENST00000525937.1:ENST00000478773.5:ENST00000278243.9:ENST00000483829.5:ENST00000487112.5:ENST00000463452.6:ENST00000496834.6:ENST00000479072.5:ENST00000469307.4:ENST00000464590.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.84569	4.937480000000001	5.02927	0.0610722	0.0095202	0.158506	0.0650078
chr20	36856183	36856282	7557063	0	-	0.525253	(0.523,0.58]	chr20	789155	164	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.84569	4.937480000000001	5.02927	0.0610722	0.0095202	0.158506	0.0650078
chr3	52238296	52238393	1777961	0	-	0.556701	(0.523,0.58]	chr3	184837	22	INTRON	INTRON	TWF2	ENSG00000247596.10	ENST00000305533.10:ENST00000678838.1:ENST00000679296.1:ENST00000676989.1:ENST00000678549.1:ENST00000678700.1:ENST00000676800.1:ENST00000677127.1:ENST00000678681.1:ENST00000499914.2:ENST00000472755.2:ENST00000678330.1:ENST00000676988.1:ENST00000677058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.84569	4.937480000000001	5.02927	0.0610722	0.0095202	0.158506	0.0650078
chr13	51403800	51403899	5715435	0	-	0.373737	(0.36,0.39]	chr13	560749	6	INTRON	INTRON	INTS6	ENSG00000102786.15	ENST00000398119.6:ENST00000311234.9:ENST00000469430.5:ENST00000497989.5:ENST00000486195.6:ENST00000491189.5:ENST00000466784.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.82572	4.9373249999999995	5.04893	0.0751666	0.0125348	0.172839	0.0765738
chr5	32156864	32156964	2630483	0	-	0.39	(0.36,0.39]	chr5	261026	126	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.82572	4.9373249999999995	5.04893	0.0751666	0.0125348	0.172839	0.0765738
chr6	130867770	130867865	3260211	0	-	0.294737	(0.29,0.33]	chr6	315458	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000528282.5:ENST00000531410.5:ENST00000452150.6:ENST00000392427.7:ENST00000530757.5:ENST00000368128.6:ENST00000527411.5:ENST00000524581.5:ENST00000525271.5:ENST00000529208.5:ENST00000525193.5:ENST00000527659.5:ENST00000527017.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	4.51618	4.9373249999999995	5.35847	0.0285091	0.0269557	0.123012	0.112113
chr19	18468990	18469089	7347881	0	-	0.626263	(0.58,1]	chr19	761486	27	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.3962	4.937295000000001	5.47839	0.0250928	0.0145198	0.114418	0.0823104
chr1	167422264	167422364	265562	0	+	0.38	(0.36,0.39]	chr1	31300	63	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	POU2F1	ENSG00000143190.23	ENST00000367866.7:ENST00000271411.8:ENST00000429375.6:ENST00000367865.5:ENST00000541643.7:ENST00000367862.9:ENST00000443275.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.885	4.93721	4.98942	0.0697729	0.0141427	0.167185	0.0833845
chr19	14715097	14715192	7215076	0	+	0.368421	(0.36,0.39]	chr19	737064	4	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ZNF333	ENSG00000160961.12	ENST00000292530.11:ENST00000597007.5:ENST00000540689.6:ENST00000597301.5:ENST00000598161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	47	2	4.885	4.93721	4.98942	0.0697729	0.0141427	0.167185	0.0833845
chr10	18554969	18555069	4642278	0	-	0.42	(0.419,0.45]	chr10	443321	26	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	58	2	4.08324	4.93706	5.79088	0.0727147	0.022052	0.199502	0.101502
chr3	124086291	124086389	1548747	0	+	0.44898	(0.419,0.45]	chr3	164299	36	INTRON	INTRON	KALRN	ENSG00000160145.16	ENST00000682506.1:ENST00000683571.1:ENST00000682861.1:ENST00000483658.2:ENST00000683592.1:ENST00000477496.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	49	2	4.63955	4.9368099999999995	5.23407	0.0486006	0.0293406	0.145074	0.125102
chr5	139651765	139651865	2549678	0	+	0.5	(0.485,0.523]	chr5	253168	2	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.52142	4.936545000000001	5.35167	0.0294163	0.0273555	0.119337	0.116079
chr1	93459796	93459896	185730	0	+	0.38	(0.36,0.39]	chr1	20160	111	INTRON	INTRON	FNBP1L	ENSG00000137942.18	ENST00000271234.13:ENST00000260506.12:ENST00000370253.6	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.72331	4.936445	5.14958	0.0493212	0.0236929	0.146207	0.111208
chr10	103835518	103835618	4758460	0	-	0.38	(0.36,0.39]	chr10	454819	338	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.72331	4.936445	5.14958	0.0493212	0.0236929	0.146207	0.111208
chr3	197147449	197147549	1989942	0	-	0.39	(0.36,0.39]	chr3	202658	43	INTRON	INTRON	DLG1	ENSG00000075711.21	ENST00000667157.1:ENST00000346964.6:ENST00000656428.1:ENST00000663148.1:ENST00000655488.1:ENST00000357674.9:ENST00000671185.1:ENST00000658701.1:ENST00000667104.1:ENST00000661336.1:ENST00000669565.1:ENST00000670455.1:ENST00000656087.1:ENST00000670366.1:ENST00000653583.1:ENST00000653795.1:ENST00000671246.1:ENST00000661453.1:ENST00000665728.1:ENST00000664564.1:ENST00000653331.1:ENST00000660432.1:ENST00000660898.1:ENST00000657381.1:ENST00000659221.1:ENST00000654737.1:ENST00000669332.1:ENST00000659716.1:ENST00000660553.1:ENST00000664991.1:ENST00000419354.5:ENST00000661440.1:ENST00000667971.1:ENST00000670935.1:ENST00000668578.1:ENST00000666007.1:ENST00000661229.1:ENST00000660237.1:ENST00000657098.1:ENST00000661013.1:ENST00000436682.6:ENST00000452595.5:ENST00000662727.1:ENST00000422288.6:ENST00000448528.6:ENST00000443183.5:ENST00000656944.1:ENST00000392382.6:ENST00000450955.5:ENST00000658155.1:ENST00000669714.1:ENST00000654733.1:ENST00000469073.2:ENST00000419227.5:ENST00000392381.7:ENST00000471733.5:ENST00000419553.6:ENST00000447466.1:ENST00000661808.1:ENST00000453607.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	4.72331	4.936445	5.14958	0.0493212	0.0236929	0.146207	0.111208
chr22	35947983	35948082	7805019	0	-	0.393939	(0.39,0.419]	chr22	817791	87	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000695807.1:ENST00000408983.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.82439	4.936375	5.04836	0.0762206	0.0126072	0.174484	0.0768036
chr7	38216352	38216448	3350254	0	+	0.40625	(0.39,0.419]	chr7	323999	14	EXON_MRNA	EXON_MRNA:INTRON	STARD3NL	ENSG00000010270.14	ENST00000009041.12:ENST00000434197.5:ENST00000471550.1:ENST00000396013.5:ENST00000440144.5:ENST00000453225.5:ENST00000429075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	4.82439	4.936375	5.04836	0.0762206	0.0126072	0.174484	0.0768036
chr12	80880664	80880764	5464667	0	-	0.41	(0.39,0.419]	chr12	537360	320	INTRON	INTRON	LIN7A	ENSG00000111052.8	ENST00000552864.6:ENST00000261203.7:ENST00000549417.5:ENST00000552093.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.88366	4.93626	4.98886	0.0707789	0.0142222	0.168159	0.0833845
chr11	4029571	4029671	4790108	0	+	0.58	(0.523,0.58]	chr11	458934	52	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000530554.5:ENST00000528656.5:ENST00000525055.5:ENST00000532990.1:ENST00000526771.5:ENST00000527484.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.905	4.93607	4.96714	0.0563605	0.0108948	0.154188	0.0706366
chr11	112252981	112253081	4942394	0	+	0.53	(0.523,0.58]	chr11	476600	151	INTRON	INTRON	PTS	ENSG00000150787.8	ENST00000531673.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	46	2	4.905	4.93607	4.96714	0.0563605	0.0108948	0.154188	0.0706366
chr15	40107947	40108042	6235238	0	-	0.536842	(0.523,0.58]	chr15	613048	3	SS5_PROX	SS5_PROX:INTRON	BMF	ENSG00000104081.14	ENST00000354670.9:ENST00000558774.5:ENST00000559701.5:ENST00000557870.1:ENST00000560430.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.905	4.93607	4.96714	0.0563605	0.0108948	0.154188	0.0706366
chr2	239369703	239369803	1392409	0	-	0.58	(0.523,0.58]	chr2	148759	164	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.905	4.93607	4.96714	0.0563605	0.0108948	0.154188	0.0706366
chr22	46929830	46929930	7746693	0	+	0.58	(0.523,0.58]	chr22	812232	160	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.905	4.93607	4.96714	0.0563605	0.0108948	0.154188	0.0706366
chr7	139703344	139703444	3723179	0	-	0.39	(0.36,0.39]	chr7	357498	713	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	1	108	2	4.10321	4.93607	5.76893	0.0200694	0.00228451	0.0971995	0.0252966
chr8	17241992	17242092	3944751	0	-	0.53	(0.523,0.58]	chr8	376801	8	EXON_MRNA	EXON_MRNA:INTRON	CNOT7	ENSG00000198791.12	ENST00000361272.9:ENST00000523917.5:ENST00000519954.5:ENST00000519918.5:ENST00000524358.5:ENST00000519998.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.905	4.93607	4.96714	0.0563605	0.0108948	0.154188	0.0706366
chr9	137782090	137782190	4266130	0	+	0.58	(0.523,0.58]	chr9	407439	4	SS3_PROX	SS3_PROX:INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.905	4.93607	4.96714	0.0563605	0.0108948	0.154188	0.0706366
chr10	18558966	18559066	4642318	0	-	0.39	(0.36,0.39]	chr10	443321	66	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	55	2	4.20082	4.93605	5.67128	0.0581116	0.023302	0.175217	0.103669
chr1	43423816	43423916	106293	0	+	0.57	(0.523,0.58]	chr1	12951	1	SS3_PROX	SS3_PROX:INTRON	SZT2	ENSG00000198198.17	ENST00000562955.2:ENST00000634258.3:ENST00000470139.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.60868	4.936	5.26332	0.0337698	0.0226775	0.124319	0.108193
chr1	111726771	111726869	561666	0	-	0.571429	(0.523,0.58]	chr1	64439	38	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	INKA2	ENSG00000197852.12	ENST00000527570.1:ENST00000357260.6:ENST00000534365.1:ENST00000444059.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.60868	4.936	5.26332	0.0337698	0.0226775	0.124319	0.108193
chr11	70788649	70788749	5062168	0	-	0.56	(0.523,0.58]	chr11	492701	708	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.60868	4.936	5.26332	0.0337698	0.0226775	0.124319	0.108193
chr7	5538683	5538782	3537301	0	-	0.575758	(0.523,0.58]	chr7	341597	82	INTRON	INTRON	ACTB	ENSG00000075624.17	ENST00000675515.1:ENST00000443528.5:ENST00000414620.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.60868	4.936	5.26332	0.0337698	0.0226775	0.124319	0.108193
chr1	21605665	21605765	419503	0	-	0.51	(0.485,0.523]	chr1	48927	2	SS5_PROX	SS5_PROX:INTRON	RAP1GAP	ENSG00000076864.21	ENST00000374765.9:ENST00000471600.6:ENST00000374761.6:ENST00000374763.6:ENST00000542643.6:ENST00000611549.4:ENST00000495204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.84611	4.93592	5.02573	0.0608067	0.00985879	0.158506	0.0664239
chr19	5288033	5288132	7316488	0	-	0.494949	(0.485,0.523]	chr19	755347	14	INTRON	INTRON	PTPRS	ENSG00000105426.18	ENST00000588552.5:ENST00000262963.11:ENST00000591760.5:ENST00000586065.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.84611	4.93592	5.02573	0.0608067	0.00985879	0.158506	0.0664239
chr19	33423333	33423433	7365071	0	-	0.49	(0.485,0.523]	chr19	763415	93	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000590731.6:ENST00000609145.5:ENST00000588719.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	46	2	4.84611	4.93592	5.02573	0.0608067	0.00985879	0.158506	0.0664239
chr21	45208335	45208435	7630024	0	+	0.5	(0.485,0.523]	chr21	797621	32	INTRON	INTRON	ADARB1	ENSG00000197381.17	ENST00000348831.9:ENST00000389861.7:ENST00000389863.8:ENST00000492414.5:ENST00000496664.5:ENST00000437626.5:ENST00000629643.2:ENST00000360697.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	46	2	4.84611	4.93592	5.02573	0.0608067	0.00985879	0.158506	0.0664239
chr7	47518139	47518239	3588994	0	-	0.52	(0.485,0.523]	chr7	346138	108	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.84611	4.93592	5.02573	0.0608067	0.00985879	0.158506	0.0664239
chr3	142790618	142790718	1592274	0	+	0.54	(0.523,0.58]	chr3	168200	2	SS3_PROX	SS3_PROX:INTRON	TRPC1	ENSG00000144935.16	ENST00000476941.6:ENST00000273482.10	protein_coding	protein_coding	protein_coding	protein_coding	1	101	2	3.96183	4.9359	5.90997	0.012016	0.00255427	0.0743424	0.0273114
chr11	61273319	61273416	5041311	0	-	0.670103	(0.58,1]	chr11	488762	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10:ENST00000535710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	193	2	3.29312	4.93567	6.57822	0.00707963	7.66421e-5	0.0558168	0.00224403
chr8	99228884	99228983	3879370	0	+	0.414141	(0.39,0.419]	chr8	371760	355	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1:ENST00000521932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	107	2	3.74353	4.935639999999999	6.12775	0.0115883	0.00554536	0.0731017	0.0456911
chr14	104776770	104776864	6057656	0	-	0.723404	(0.58,1]	chr14	594698	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000557552.1:ENST00000683722.1:ENST00000555528.5:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000544168.5:ENST00000554848.5:ENST00000682269.1:ENST00000555380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	94	2	3.85993	4.9356349999999996	6.01134	0.00531709	0.00251049	0.047841	0.026941
chr22	31180870	31180970	7711666	0	+	0.44	(0.419,0.45]	chr22	806944	202	INTRON	INTRON	RNF185	ENSG00000138942.17	ENST00000326132.11:ENST00000494514.5:ENST00000471384.5:ENST00000518626.5:ENST00000266252.8:ENST00000468921.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	52	2	4.38804	4.93557	5.4831	0.0451818	0.0345118	0.154539	0.126025
chr9	116621442	116621542	4375834	0	-	0.42	(0.419,0.45]	chr9	418128	6	INTRON	INTRON	ASTN2	ENSG00000148219.18	ENST00000313400.9:ENST00000361209.6:ENST00000373986.7:ENST00000341734.8:ENST00000288520.9:ENST00000361477.8:ENST00000358637.4	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.38804	4.93557	5.4831	0.0451818	0.0345118	0.154539	0.126025
chr2	72967947	72968047	1188472	0	-	0.45	(0.419,0.45]	chr2	128799	1	SS5_PROX	SS5_PROX:INTRON	SFXN5	ENSG00000144040.13	ENST00000272433.7:ENST00000461352.5:ENST00000474528.5:ENST00000495208.5:ENST00000482289.5:ENST00000490056.5:ENST00000411783.5:ENST00000410065.5:ENST00000482542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	108	2	3.82602	4.935215	6.04441	0.0149622	0.00478241	0.0835955	0.0415621
chr1	33012891	33012987	439890	0	-	0.375	(0.36,0.39]	chr1	52495	9	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	AK2	ENSG00000004455.18	ENST00000373449.7:ENST00000672715.1:ENST00000695598.1:ENST00000550338.6:ENST00000695599.1:ENST00000354858.11:ENST00000695600.1:ENST00000695601.1:ENST00000491241.2:ENST00000695602.1:ENST00000469238.2:ENST00000695603.1:ENST00000695604.1:ENST00000672308.1:ENST00000548033.5:ENST00000467905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	173	2	3.28283	4.935105	6.58738	0.00521906	0.0034164	0.0475638	0.0331793
chr20	50526081	50526181	7493638	0	+	0.38	(0.36,0.39]	chr20	781416	151	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.7639	4.93499	5.10608	0.0811309	0.0111429	0.177951	0.071709
chr11	63901897	63901997	4867448	0	+	0.49	(0.485,0.523]	chr11	466826	3	SS3_PROX	SS3_PROX:INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000677688.1:ENST00000509502.6:ENST00000408948.7:ENST00000676602.1:ENST00000678482.1:ENST00000678662.1:ENST00000679321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.78426	4.93477	5.08528	0.0660335	0.0086528	0.162385	0.0612699
chr12	52052297	52052373	5233991	0	+	0.5	(0.485,0.523]	chr12	508233	4	SS3_PROX	SS3_PROX:INTRON	NR4A1	ENSG00000123358.20	ENST00000360284.7:ENST00000548977.5:ENST00000546842.5:ENST00000545748.5:ENST00000550082.5:ENST00000549102.1:ENST00000478250.1:ENST00000547206.5:ENST00000243050.5:ENST00000394824.2:ENST00000394825.6:ENST00000550763.1:ENST00000548232.1:ENST00000562373.1:ENST00000548733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	46	2	4.78426	4.93477	5.08528	0.0660335	0.0086528	0.162385	0.0612699
chr7	24712353	24712450	3553651	0	-	0.515464	(0.485,0.523]	chr7	343335	16	INTRON	INTRON	GSDME	ENSG00000105928.16	ENST00000342947.9:ENST00000645220.1:ENST00000409970.6:ENST00000419307.6:ENST00000446822.6:ENST00000415480.5:ENST00000414428.2:ENST00000559637.6:ENST00000411476.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.78426	4.93477	5.08528	0.0660335	0.0086528	0.162385	0.0612699
chr2	39395304	39395404	1128907	0	-	0.36	(0.33,0.36]	chr2	123687	156	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000341681.9:ENST00000429397.5:ENST00000437968.1:ENST00000484274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	144	2	3.15236	4.93473	6.7171	0.00764784	0.00343661	0.0563517	0.0375956
chr10	103699312	103699412	4757093	0	-	0.51	(0.485,0.523]	chr10	454791	58	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.90542	4.934515	4.96361	0.0561086	0.0112713	0.154188	0.071709
chr2	240625479	240625568	1075198	0	+	0.651685	(0.58,1]	chr2	116655	1	UTR5	UTR5:EXON_MRNA:INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2:ENST00000407714.2	protein_coding	protein_coding	protein_coding	protein_coding	2	128	2	3.25213	4.934345	6.61656	0.00405239	0.00152464	0.0371518	0.0240691
chr18	58738719	58738817	7075784	0	+	0.306122	(0.29,0.33]	chr18	721438	4	INTRON	INTRON	MALT1	ENSG00000172175.15	ENST00000649217.2:ENST00000345724.7:ENST00000650045.1:ENST00000648670.1:ENST00000649202.1:ENST00000649125.1:ENST00000649756.1:ENST00000589873.5:ENST00000650355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	50	2	4.42727	4.93431	5.44135	0.0335282	0.0236557	0.133139	0.105002
chr18	62267435	62267528	7078248	0	+	0.354839	(0.33,0.36]	chr18	721714	3	INTRON	INTRON	RELCH	ENSG00000134444.15	ENST00000644646.2:ENST00000256858.10:ENST00000398130.6:ENST00000587725.5:ENST00000588446.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	0	48	2	4.49572	4.93417	5.37262	0.103264	0.00569729	0.197541	0.046716
chr10	4982194	4982293	4438645	0	+	0.474747	(0.45,0.485]	chr10	424890	46	UTR3	UTR3:EXON_MRNA	AKR1C1	ENSG00000187134.14	ENST00000380872.9	protein_coding	protein_coding	protein_coding	protein_coding	1	104	2	3.70282	4.934165	6.16551	0.00879664	0.00539085	0.0630845	0.0450882
chr6	158124736	158124835	3298696	0	-	0.414141	(0.39,0.419]	chr6	319255	38	INTRON	INTRON	SERAC1	ENSG00000122335.17	ENST00000647468.2:ENST00000648111.1:ENST00000646208.1:ENST00000607742.5:ENST00000645172.1:ENST00000645077.1:ENST00000607071.6:ENST00000642244.1:ENST00000646190.1:ENST00000646410.1:ENST00000644972.1:ENST00000606965.5:ENST00000646562.1:ENST00000642903.1:ENST00000367101.5:ENST00000435180.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.92679	4.933695	4.9406	0.0658437	0.0160946	0.162385	0.0896852
chr19	35006520	35006620	7244925	0	+	0.52	(0.485,0.523]	chr19	742073	33	INTRON	INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	50	2	4.43249	4.93351	5.43453	0.0322299	0.0258944	0.12988	0.109555
chr3	114861661	114861761	1880423	0	-	0.5	(0.485,0.523]	chr3	190936	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZBTB20	ENSG00000181722.17	ENST00000675478.1:ENST00000357258.8:ENST00000462705.5:ENST00000479879.5:ENST00000463890.5:ENST00000491500.5:ENST00000480832.5:ENST00000492665.5:ENST00000488663.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.43249	4.93351	5.43453	0.0322299	0.0258944	0.12988	0.109555
chr5	154837162	154837256	2794402	0	-	0.510638	(0.485,0.523]	chr5	274313	10	INTRON	INTRON	FAXDC2	ENSG00000170271.11	ENST00000326080.10:ENST00000423554.5:ENST00000517938.5:ENST00000520581.5:ENST00000521518.5:ENST00000519501.5:ENST00000518651.5:ENST00000520968.5:ENST00000517448.5:ENST00000520461.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	50	2	4.43249	4.93351	5.43453	0.0322299	0.0258944	0.12988	0.109555
chr7	100581195	100581276	3654729	0	-	0.518519	(0.485,0.523]	chr7	352213	5	INTRON	INTRON	LRCH4	ENSG00000077454.17	ENST00000310300.11:ENST00000497245.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.43249	4.93351	5.43453	0.0322299	0.0258944	0.12988	0.109555
chr2	47502460	47502559	790068	0	+	0.464646	(0.45,0.485]	chr2	90266	194	INTRON	INTRON	MSH2	ENSG00000095002.15	ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000644900.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	52	2	4.32491	4.9333849999999995	5.54186	0.0418883	0.0243502	0.149021	0.106588
chr2	238439186	238439285	1074075	0	+	0.434343	(0.419,0.45]	chr2	116441	28	INTRON	INTRON	ASB1	ENSG00000065802.12	ENST00000463352.5:ENST00000264607.9:ENST00000409297.1:ENST00000438264.5:ENST00000491653.1:ENST00000468122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	108	2	3.92957	4.93338	5.93719	0.0176643	0.00372951	0.0909046	0.0351254
chr1	2242124	2242223	4632	0	+	0.555556	(0.523,0.58]	chr1	1048	91	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	168	2	2.87061	4.93318	6.99575	0.0315682	4.88649e-5	0.120781	0.00161739
chr19	1998159	1998257	7307775	0	-	0.55102	(0.523,0.58]	chr19	753493	3	INTRON	INTRON	BTBD2	ENSG00000133243.10	ENST00000255608.9:ENST00000589200.3:ENST00000590646.5:ENST00000587742.5:ENST00000588395.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	111	2	4.55836	4.933155	5.30795	0.0315825	4.89235e-4	0.120781	0.0086136
chr14	34844799	34844899	5957171	0	-	0.21	[0,0.29]	chr14	583933	157	INTRON	INTRON	BAZ1A	ENSG00000198604.11	ENST00000358716.8:ENST00000360310.6:ENST00000382422.6:ENST00000553573.1:ENST00000553853.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.82096	4.933070000000001	5.04518	0.0456837	0.00813784	0.142336	0.0588114
chr16	84757617	84757717	6514408	0	+	0.2	[0,0.29]	chr16	646296	116	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000563892.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.82096	4.933070000000001	5.04518	0.0456837	0.00813784	0.142336	0.0588114
chr1	155490543	155490643	597017	0	-	0.55	(0.523,0.58]	chr1	70084	77	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	101	2	3.8181	4.93301	6.04792	0.00948306	0.0037097	0.0656057	0.0349741
chr2	172027557	172027657	954879	0	+	0.35	(0.33,0.36]	chr2	104934	53	INTRON	INTRON	METAP1D	ENSG00000172878.14	ENST00000493035.5:ENST00000315796.5:ENST00000493742.1:ENST00000491440.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.64131	4.932895	5.22448	0.0867669	0.00791583	0.182221	0.057762
chr14	54721251	54721350	5820996	0	+	0.353535	(0.33,0.36]	chr14	569093	175	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000557013.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	4.65869	4.93278	5.20687	0.041040600000000003	0.0248983	0.136289	0.114418
chr6	149545635	149545735	3287846	0	-	0.55	(0.523,0.58]	chr6	317742	3	SS5_PROX	SS5_PROX:INTRON	PPIL4	ENSG00000131013.4	ENST00000253329.3	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.71922	4.93262	5.14602	0.0721601	0.00734367	0.168159	0.0550721
chr16	58161605	58161703	6598356	0	-	0.397959	(0.39,0.419]	chr16	659848	22	EXON_MRNA	EXON_MRNA:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	240	2	2.62932	4.932595	7.23587	0.00859019	0.00168028	0.0612699	0.0253887
chr3	149656675	149656775	1941191	0	-	0.48	(0.45,0.485]	chr3	197500	4	SS5_PROX	SS5_PROX:INTRON	WWTR1	ENSG00000018408.15	ENST00000465804.5:ENST00000360632.8:ENST00000467467.5:ENST00000479238.1	protein_coding	protein_coding	protein_coding	protein_coding	4	447	2	4.41741	4.93217	5.44693	6.34743e-4	1.1229e-4	0.014808	0.00298538
chr13	113047936	113048035	5656114	0	+	0.525253	(0.523,0.58]	chr13	555180	7	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.90222	4.932095	4.96197	0.0521137	0.0125132	0.148503	0.0765738
chr15	70092733	70092832	6312640	0	-	0.535354	(0.523,0.58]	chr15	622336	162	INTRON	INTRON	TLE3	ENSG00000140332.18	ENST00000558939.5:ENST00000451782.7:ENST00000317509.12:ENST00000557919.5:ENST00000560525.6:ENST00000559929.5:ENST00000560589.5:ENST00000561453.5:ENST00000557997.5:ENST00000560939.5:ENST00000559048.5:ENST00000440567.7:ENST00000558201.5:ENST00000654081.1:ENST00000559191.5:ENST00000557907.5:ENST00000558379.5:ENST00000557984.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	46	2	4.90222	4.932095	4.96197	0.0521137	0.0125132	0.148503	0.0765738
chr2	3330926	3331026	1081421	0	-	0.54	(0.523,0.58]	chr2	117645	105	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	46	2	4.90222	4.932095	4.96197	0.0521137	0.0125132	0.148503	0.0765738
chr7	96976359	96976458	3646053	0	-	0.555556	(0.523,0.58]	chr7	350894	69	INTRON	INTRON	DLX6-AS1	ENSG00000231764.11	ENST00000430027.3:ENST00000659765.1:ENST00000458352.5:ENST00000656954.1:ENST00000605417.6:ENST00000654988.1:ENST00000658043.1:ENST00000452769.4:ENST00000437331.4:ENST00000430404.7	lncRNA	lncRNA	lncRNA	lncRNA	0	46	2	4.90222	4.932095	4.96197	0.0521137	0.0125132	0.148503	0.0765738
chr9	93663126	93663222	4184530	0	+	0.53125	(0.523,0.58]	chr9	397772	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.90222	4.932095	4.96197	0.0521137	0.0125132	0.148503	0.0765738
chr2	63026542	63026642	817192	0	+	0.38	(0.36,0.39]	chr2	92205	294	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000496857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	143	2	3.46668	4.93178	6.39688	0.00723998	0.00373898	0.0565323	0.0352008
chrX	123865118	123865217	7946331	0	+	0.313131	(0.29,0.33]	chrX	831426	42	INTRON	INTRON	XIAP	ENSG00000101966.13	ENST00000422098.5:ENST00000481776.5:ENST00000434753.7:ENST00000497906.5:ENST00000468691.5:ENST00000430625.1:ENST00000371199.8:ENST00000497640.1:ENST00000355640.3:ENST00000468503.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.72635	4.931755	5.13716	0.0672935	0.00805226	0.163263	0.0582806
chr6	2092190	2092290	3083801	0	-	0.43	(0.419,0.45]	chr6	299503	489	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5	protein_coding	protein_coding	protein_coding	protein_coding	1	108	2	3.95434	4.9317150000000005	5.90909	0.0184411	0.0035117	0.0927235	0.0339498
chr20	44407567	44407644	7482994	0	+	0.623377	(0.58,1]	chr20	779655	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	171	2	3.12407	4.9317	6.73933	0.00207036	0.00116939	0.0236119	0.0206836
chr14	35781538	35781637	5961134	0	-	0.313131	(0.29,0.33]	chr14	584374	54	INTRON	INTRON	RALGAPA1	ENSG00000174373.17	ENST00000307138.10:ENST00000389698.7:ENST00000680220.1:ENST00000554259.6:ENST00000637992.1:ENST00000382366.7:ENST00000553892.2	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.89341	4.931275	4.96914	0.0481918	0.0135896	0.144601	0.0811697
chr20	13039952	13040052	7439030	0	+	0.31	(0.29,0.33]	chr20	774133	302	INTRON	INTRON	SPTLC3	ENSG00000172296.13	ENST00000399002.7:ENST00000476791.1:ENST00000434210.5:ENST00000450297.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.89341	4.931275	4.96914	0.0481918	0.0135896	0.144601	0.0811697
chr10	75727247	75727347	4523436	0	+	0.47	(0.45,0.485]	chr10	432271	793	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	662	2	4.11977	4.93127	5.74277	3.48634e-4	8.97683e-5	0.0106878	0.00252158
chr2	9210429	9210529	713118	0	+	0.52	(0.485,0.523]	chr2	83373	28	INTRON	INTRON	ASAP2	ENSG00000151693.11	ENST00000315273.4:ENST00000281419.8	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.71964	4.9310600000000004	5.14248	0.0718646	0.00761903	0.168159	0.0561937
chr22	46917542	46917642	7746570	0	+	0.52	(0.485,0.523]	chr22	812232	37	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.71964	4.9310600000000004	5.14248	0.0718646	0.00761903	0.168159	0.0561937
chr17	57440689	57440739	6761617	0	+	0.54	(0.523,0.58]	chr17	682130	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	101	2	3.78755	4.930775	6.074	0.00906277	0.00401039	0.0637469	0.0371192
chr1	44801932	44802032	114926	0	+	0.5	(0.485,0.523]	chr1	14239	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PLK3	ENSG00000173846.13	ENST00000372201.5:ENST00000465443.5:ENST00000476731.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.8987	4.930545	4.96239	0.0518747	0.0129327	0.148503	0.0778105
chr1	224127075	224127175	348334	0	+	0.49	(0.485,0.523]	chr1	39234	123	INTRON	INTRON	FBXO28	ENSG00000143756.12	ENST00000366862.10:ENST00000424254.6:ENST00000523990.1:ENST00000483773.1:ENST00000519894.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.8987	4.930545	4.96239	0.0518747	0.0129327	0.148503	0.0778105
chr11	3941671	3941770	4789225	0	+	0.494949	(0.485,0.523]	chr11	458908	191	INTRON	INTRON	STIM1	ENSG00000167323.12	ENST00000525403.5:ENST00000526596.2:ENST00000300737.8:ENST00000616714.4:ENST00000527651.5:ENST00000532610.5:ENST00000532919.5:ENST00000530554.5:ENST00000524822.5:ENST00000528656.5:ENST00000525055.5	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.8987	4.930545	4.96239	0.0518747	0.0129327	0.148503	0.0778105
chr19	1835549	1835648	7307276	0	-	0.50505	(0.485,0.523]	chr19	753393	43	INTRON	INTRON	REXO1	ENSG00000079313.15	ENST00000170168.9:ENST00000587524.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.8987	4.930545	4.96239	0.0518747	0.0129327	0.148503	0.0778105
chr7	99125588	99125688	3650221	0	-	0.52	(0.485,0.523]	chr7	351382	40	INTRON	INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1:ENST00000472627.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.8987	4.930545	4.96239	0.0518747	0.0129327	0.148503	0.0778105
chr7	75113929	75114028	3394985	0	+	0.242424	[0,0.29]	chr7	327805	10	INTRON	INTRON	GTF2IRD2B	ENSG00000174428.19	ENST00000651028.1:ENST00000620662.1:ENST00000472837.7:ENST00000619142.4:ENST00000418185.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	4.75627	4.930515	5.10476	0.050276	0.0071055	0.148161	0.0541241
chr2	11789641	11789738	722495	0	+	0.463918	(0.45,0.485]	chr2	84431	8	INTRON	INTRON	LPIN1	ENSG00000134324.12	ENST00000449576.6:ENST00000425416.6:ENST00000396097.5:ENST00000396099.5:ENST00000256720.6:ENST00000674199.1:ENST00000404113.6:ENST00000464953.2:ENST00000454151.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.5725	4.930479999999999	5.28846	0.0926859	0.00612862	0.188571	0.0489549
chr7	101999798	101999898	3435812	0	+	0.47	(0.45,0.485]	chr7	332528	398	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	47	2	4.5725	4.930479999999999	5.28846	0.0926859	0.00612862	0.188571	0.0489549
chr15	60495061	60495161	6284457	0	-	0.31	(0.29,0.33]	chr15	619448	69	UTR3	UTR3:EXON_MRNA	RORA	ENSG00000069667.16	ENST00000335670.11	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.2311	4.93047	5.62984	0.0471437	0.0174273	0.156915	0.0901531
chr1	11023426	11023525	27796	0	+	0.515152	(0.485,0.523]	chr1	3255	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000639083.1:ENST00000639599.1:ENST00000240185.8:ENST00000614757.4:ENST00000473869.5:ENST00000315091.7:ENST00000617172.4:ENST00000611963.4:ENST00000619555.4:ENST00000620632.4:ENST00000610369.4:ENST00000614494.1:ENST00000611136.4:ENST00000477447.6:ENST00000612542.1:ENST00000620505.1:ENST00000621573.1:ENST00000611008.4:ENST00000613177.1:ENST00000622108.1:ENST00000496840.1:ENST00000617757.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	707	2	4.43289	4.93041	5.42793	0.00111917	3.65497e-6	0.0202296	2.54282e-4
chr7	6703569	6703667	3542749	0	-	0.489796	(0.485,0.523]	chr7	342318	28	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	1	101	2	3.86607	4.930405	5.99474	0.0103305	0.00334297	0.0684871	0.0327065
chr11	64149904	64149997	5049077	0	-	0.569892	(0.523,0.58]	chr11	490261	5	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5:ENST00000538595.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	47	2	4.50593	4.930225	5.35452	0.094303	0.00453096	0.188571	0.0400651
chr17	80023602	80023702	6982152	0	-	0.73	(0.58,1]	chr17	713081	96	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.54927	4.929815	5.31036	0.0643046	0.00312721	0.161669	0.0311915
chr20	58697883	58697983	7498662	0	+	0.63	(0.58,1]	chr20	782002	29	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	45	2	4.54927	4.929815	5.31036	0.0643046	0.00312721	0.161669	0.0311915
chr2	36534569	36534669	759443	0	+	0.52	(0.485,0.523]	chr2	88048	52	INTRON	INTRON	CRIM1	ENSG00000150938.10	ENST00000280527.7	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.23628	4.92964	5.623	0.045492200000000003	0.0192139	0.154539	0.095424900000000007
chr10	32055447	32055547	4662333	0	-	0.39	(0.36,0.39]	chr10	445119	2	SS5_PROX	SS5_PROX:INTRON	KIF5B	ENSG00000170759.11	ENST00000302418.5	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.86249	4.9296050000000005	4.99672	0.0604395	0.0181775	0.158506	0.0955836
chr14	103638483	103638582	5924202	0	+	0.363636	(0.36,0.39]	chr14	579587	86	INTRON	INTRON	KLC1	ENSG00000126214.22	ENST00000557172.5:ENST00000348520.10:ENST00000380038.7:ENST00000334553.11:ENST00000555467.1:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	47	2	4.86249	4.9296050000000005	4.99672	0.0604395	0.0181775	0.158506	0.0955836
chr11	118630582	118630644	4948505	0	+	0.467742	(0.45,0.485]	chr11	477794	1	INTRON	INTRON	PHLDB1	ENSG00000019144.20	ENST00000361417.6:ENST00000530994.5:ENST00000600882.6:ENST00000528594.5:ENST00000621027.4:ENST00000356063.9:ENST00000532517.5:ENST00000614369.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.74641	4.929355	5.1123	0.0458344	0.0193126	0.142336	0.0994526
chr16	54074836	54074936	6461281	0	+	0.48	(0.45,0.485]	chr16	640652	19	INTRON	INTRON	FTO	ENSG00000140718.21	ENST00000471389.6:ENST00000636992.1:ENST00000637969.1:ENST00000637845.1:ENST00000637562.1:ENST00000464071.1:ENST00000612285.2:ENST00000431610.6:ENST00000460382.5:ENST00000463855.1:ENST00000635892.1:ENST00000268349.7:ENST00000472835.1:ENST00000636091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.74641	4.929355	5.1123	0.0458344	0.0193126	0.142336	0.0994526
chr7	135408615	135408715	3717904	0	-	0.48	(0.45,0.485]	chr7	357162	100	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000414802.5:ENST00000428680.6:ENST00000315544.6	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.74641	4.929355	5.1123	0.0458344	0.0193126	0.142336	0.0994526
chr7	30160400	30160499	3338874	0	+	0.434343	(0.419,0.45]	chr7	323119	30	UTR3	UTR3:EXON_MRNA	MTURN	ENSG00000180354.16	ENST00000324453.13:ENST00000324489.5	protein_coding	protein_coding	protein_coding	protein_coding	1	108	2	3.71446	4.929335	6.14421	0.0127879	0.00621762	0.0769397	0.0496139
chr20	44405359	44405458	7482969	0	+	0.545455	(0.523,0.58]	chr20	779645	21	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	542	2	4.21221	4.92929	5.64637	3.6069e-4	8.17062e-5	0.0108631	0.00235575
chr12	24921954	24922054	5395799	0	-	0.4	(0.39,0.419]	chr12	528329	190	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000342945.9:ENST00000539780.5:ENST00000546285.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.69798	4.9292300000000004	5.16048	0.088901	0.00999413	0.183874	0.0667545
chr1	43565800	43565900	107097	0	+	0.81	(0.58,1]	chr1	13192	115	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	94	2	3.79235	4.92917	6.06599	0.00477081	0.00302484	0.0450109	0.0305643
chr1	112706994	112707082	563042	0	-	0.715909	(0.58,1]	chr1	64626	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RHOC	ENSG00000155366.17	ENST00000369633.6:ENST00000369642.7:ENST00000339083.12:ENST00000285735.6:ENST00000468093.5:ENST00000369638.6:ENST00000369637.5:ENST00000369636.6:ENST00000484280.6:ENST00000369632.6:ENST00000425265.6:ENST00000436685.6:ENST00000528831.5:ENST00000484054.3:ENST00000478447.1:ENST00000527563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	94	2	3.79235	4.92917	6.06599	0.00477081	0.00302484	0.0450109	0.0305643
chr10	34684365	34684465	4670500	0	-	0.4	(0.39,0.419]	chr10	445537	48	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	2	145	2	3.68208	4.929025	6.17597	0.0107103	0.00216425	0.0701493	0.0242706
chr15	98731921	98732020	6194164	0	+	0.525253	(0.523,0.58]	chr15	609659	235	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	4.68785	4.92877	5.16969	0.0387762	0.0194172	0.131324	0.0994526
chr16	72026874	72026973	6491106	0	+	0.535354	(0.523,0.58]	chr16	645053	28	UTR3	UTR3:EXON_MRNA	DHODH	ENSG00000102967.12	ENST00000572887.5:ENST00000219240.9	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.68785	4.92877	5.16969	0.0387762	0.0194172	0.131324	0.0994526
chr2	27314703	27314799	1111553	0	-	0.541667	(0.523,0.58]	chr2	121367	12	INTRON	INTRON	MPV17	ENSG00000115204.15	ENST00000380044.6:ENST00000402310.5:ENST00000233545.6:ENST00000357186.10:ENST00000402722.5:ENST00000426513.6:ENST00000405983.5:ENST00000405076.5:ENST00000621183.4:ENST00000415514.5:ENST00000403262.6:ENST00000617583.4:ENST00000428910.5:ENST00000621470.4:ENST00000622003.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	47	2	4.68785	4.92877	5.16969	0.0387762	0.0194172	0.131324	0.0994526
chr3	13205724	13205824	1691199	0	-	0.54	(0.523,0.58]	chr3	176566	412	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.68785	4.92877	5.16969	0.0387762	0.0194172	0.131324	0.0994526
chr9	134388280	134388379	4261310	0	+	0.575758	(0.523,0.58]	chr9	406331	15	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2:ENST00000356384.4:ENST00000672570.1:ENST00000649020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	47	2	4.68785	4.92877	5.16969	0.0387762	0.0194172	0.131324	0.0994526
chr19	8240385	8240485	7200285	0	+	0.61	(0.58,1]	chr19	734188	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559490.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	97	2	3.56821	4.928675	6.28914	0.00550024	0.00303562	0.0454065	0.0350226
chr14	68444394	68444494	5865310	0	+	0.41	(0.39,0.419]	chr14	573002	325	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5:ENST00000557045.5:ENST00000554183.1:ENST00000554575.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.86193	4.928655	4.99538	0.0613573	0.0182739	0.158506	0.0958352
chr17	243131	243231	6820701	0	-	0.41	(0.39,0.419]	chr17	689558	87	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000570893.5:ENST00000576001.5:ENST00000570954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.86193	4.928655	4.99538	0.0613573	0.0182739	0.158506	0.0958352
chr6	47501586	47501686	2922657	0	+	0.4	(0.39,0.419]	chr6	287808	126	INTRON	INTRON	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.86193	4.928655	4.99538	0.0613573	0.0182739	0.158506	0.0958352
chr1	15154354	15154454	45626	0	+	0.5	(0.485,0.523]	chr1	4472	4	SS5_PROX	SS5_PROX:INTRON	TMEM51	ENSG00000171729.14	ENST00000428417.5:ENST00000376014.7:ENST00000451326.6:ENST00000400796.7:ENST00000376008.3:ENST00000434578.6	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.50634	4.928649999999999	5.35096	0.0939553	0.0047171	0.188571	0.0413976
chr14	75430765	75430863	5886084	0	+	0.510204	(0.485,0.523]	chr14	574876	18	INTRON	INTRON	JDP2	ENSG00000140044.13	ENST00000419727.6:ENST00000559773.5:ENST00000651602.1:ENST00000559060.5:ENST00000558068.1:ENST00000437176.5:ENST00000435893.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.50634	4.928649999999999	5.35096	0.0939553	0.0047171	0.188571	0.0413976
chrX	1448574	1448673	7965979	0	-	0.515152	(0.485,0.523]	chrX	834314	59	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9:ENST00000474865.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.50634	4.928649999999999	5.35096	0.0939553	0.0047171	0.188571	0.0413976
chr3	40497019	40497119	1448233	0	+	0.38	(0.36,0.39]	chr3	154669	193	INTRON	INTRON	ZNF620	ENSG00000177842.12	ENST00000649142.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	49	2	4.56926	4.92852	5.28778	0.0407706	0.031369	0.135868	0.127822
chr3	100416516	100416616	1521893	0	+	0.39	(0.36,0.39]	chr3	161917	137	INTRON	INTRON	LNP1	ENSG00000206535.8	ENST00000466996.5:ENST00000383693.8:ENST00000489752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.56926	4.92852	5.28778	0.0407706	0.031369	0.135868	0.127822
chr1	1033209	1033309	1047	0	+	0.68	(0.58,1]	chr1	166	104	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.74346	4.9285049999999995	5.11355	0.0271806	0.0121457	0.112113	0.0754623
chr17	83026974	83027073	6990817	0	-	0.656566	(0.58,1]	chr17	715120	121	INTRON	INTRON	B3GNTL1	ENSG00000175711.9	ENST00000320865.4:ENST00000576599.5:ENST00000570947.5:ENST00000571954.5:ENST00000573629.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.74346	4.9285049999999995	5.11355	0.0271806	0.0121457	0.112113	0.0754623
chr2	65430861	65430961	1172164	0	-	0.6	(0.58,1]	chr2	127582	503	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.74346	4.9285049999999995	5.11355	0.0271806	0.0121457	0.112113	0.0754623
chr10	102647915	102648015	4576503	0	+	0.57	(0.523,0.58]	chr10	437280	17	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	135	2	3.58964	4.92842	6.2672	0.00644151	0.00212218	0.0530091	0.0239927
chr10	69264186	69264286	4502936	0	+	0.41	(0.39,0.419]	chr10	430777	25	INTRON	INTRON	HKDC1	ENSG00000156510.13	ENST00000354624.6	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.48504	4.92838	5.37172	0.0367885	0.0364893	0.139793	0.129052
chr12	39338487	39338585	5411044	0	-	0.438776	(0.419,0.45]	chr12	529951	9	INTRON	INTRON	KIF21A	ENSG00000139116.19	ENST00000361418.10:ENST00000361961.7:ENST00000636569.1:ENST00000552961.5:ENST00000544797.6:ENST00000541463.6:ENST00000547108.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.81671	4.928375	5.04004	0.08258	0.0137308	0.179396	0.0814223
chr16	85390435	85390535	6516975	0	+	0.44	(0.419,0.45]	chr16	646391	311	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.81671	4.928375	5.04004	0.08258	0.0137308	0.179396	0.0814223
chr18	12430849	12430949	7020151	0	+	0.45	(0.419,0.45]	chr18	717086	3	SS3_PROX	SS3_PROX:INTRON	PRELID3A	ENSG00000141391.14	ENST00000336990.8:ENST00000590956.5:ENST00000440960.6:ENST00000589565.1:ENST00000592149.5:ENST00000587735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.81671	4.928375	5.04004	0.08258	0.0137308	0.179396	0.0814223
chr2	55007287	55007387	1148097	0	-	0.45	(0.419,0.45]	chr2	125459	192	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.81671	4.928375	5.04004	0.08258	0.0137308	0.179396	0.0814223
chr22	35849883	35849983	7804037	0	-	0.42	(0.419,0.45]	chr22	817785	94	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000359369.8:ENST00000695807.1:ENST00000408983.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.81671	4.928375	5.04004	0.08258	0.0137308	0.179396	0.0814223
chr4	98916922	98917021	2288110	0	-	0.424242	(0.419,0.45]	chr4	230116	66	INTRON	INTRON	EIF4E	ENSG00000151247.13	ENST00000450253.7:ENST00000280892.10:ENST00000515638.5:ENST00000504432.5:ENST00000511644.5:ENST00000505992.1:ENST00000507665.5:ENST00000504472.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.81671	4.928375	5.04004	0.08258	0.0137308	0.179396	0.0814223
chr9	83815501	83815601	4327210	0	-	0.44	(0.419,0.45]	chr9	413286	86	INTRON	INTRON	GKAP1	ENSG00000165113.13	ENST00000376371.7:ENST00000376365.7:ENST00000388782.8:ENST00000485742.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.81671	4.928375	5.04004	0.08258	0.0137308	0.179396	0.0814223
chr17	72560817	72560916	6963919	0	-	0.575758	(0.523,0.58]	chr17	710389	264	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	105	2	4.34417	4.92832	5.51247	0.0230387	9.01636e-4	0.102982	0.0132389
chr12	45791123	45791223	5215799	0	+	0.44	(0.419,0.45]	chr12	506511	149	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000422737.6	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.87598	4.92826	4.98054	0.0768574	0.0154548	0.174882	0.0869771
chr19	4492431	4492527	7193760	0	+	0.447917	(0.419,0.45]	chr19	732770	2	INTRON	INTRON	HDGFL2	ENSG00000167674.15	ENST00000616600.5:ENST00000621835.4:ENST00000589486.5:ENST00000615225.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.87598	4.92826	4.98054	0.0768574	0.0154548	0.174882	0.0869771
chr16	85591028	85591128	6518983	0	+	0.58	(0.523,0.58]	chr16	646396	343	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	1	101	2	3.75634	4.927975	6.09961	0.00866655	0.00434055	0.0623824	0.0390182
chr2	135099380	135099480	899710	0	+	0.39	(0.36,0.39]	chr2	101404	53	INTRON	INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1:ENST00000487003.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	143	2	3.3228	4.92781	6.53282	0.00573632	0.00534106	0.0499133	0.0447342
chr22	25487225	25487325	7701416	0	+	0.53	(0.523,0.58]	chr22	805972	257	INTRON	INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000686640.1:ENST00000509460.3:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	139	2	4.19556	4.927575	5.65959	0.00646345	0.0021416	0.0531182	0.0240825
chr11	711285	711384	4785351	0	+	0.40404	(0.39,0.419]	chr11	458134	4	INTRON	INTRON	EPS8L2	ENSG00000177106.17	ENST00000524763.5:ENST00000533256.5:ENST00000614442.4:ENST00000534755.5:ENST00000529346.5:ENST00000650127.1:ENST00000526909.5:ENST00000318562.13:ENST00000533500.5:ENST00000527807.5:ENST00000531348.5:ENST00000530636.5:ENST00000526198.5:ENST00000530118.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	4.56871	4.92757	5.28643	0.041475	0.0315133	0.136301	0.127889
chr17	17830265	17830365	6865826	0	-	0.42	(0.419,0.45]	chr17	695923	63	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.7145	4.9275	5.1405	0.0550015	0.0256236	0.153337	0.115966
chr22	37661342	37661441	7721023	0	+	0.434343	(0.419,0.45]	chr22	808491	16	INTRON	INTRON	PDXP	ENSG00000241360.2	ENST00000215904.7	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.7145	4.9275	5.1405	0.0550015	0.0256236	0.153337	0.115966
chr15	34893562	34893662	6218941	0	-	0.53	(0.523,0.58]	chr15	612500	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	AQR	ENSG00000021776.11	ENST00000156471.10:ENST00000543879.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	105	2	3.47888	4.927440000000001	6.376	0.00856566	0.00529293	0.0612	0.047841
chr19	44947202	44947256	7269164	0	+	0.5	(0.485,0.523]	chr19	746445	1	UTR5	UTR5:EXON_MRNA:INTRON	APOC4-APOC2:APOC2	ENSG00000224916.9:ENSG00000234906.11	ENST00000585685.5:ENST00000589057.5:ENST00000592257.5:ENST00000252490.7:ENST00000591597.5:ENST00000590360.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.68434	4.92723	5.17012	0.038581	0.0200045	0.131324	0.100864
chr2	233134445	233134545	1057959	0	+	0.49	(0.485,0.523]	chr2	115075	34	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000451407.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	4.68434	4.92723	5.17012	0.038581	0.0200045	0.131324	0.100864
chrX	64201373	64201473	8053013	0	-	0.49	(0.485,0.523]	chrX	840701	76	INTRON	INTRON	AMER1	ENSG00000184675.11	ENST00000374869.8	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.68434	4.92723	5.17012	0.038581	0.0200045	0.131324	0.100864
chr2	62817693	62817792	815077	0	+	0.40404	(0.39,0.419]	chr2	92095	457	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000449820.5:ENST00000426940.5:ENST00000413434.5:ENST00000405482.5:ENST00000494958.1:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	106	2	3.82801	4.927095	6.02618	0.0136549	0.0045308	0.0798074	0.0400651
chr16	85234365	85234465	6515412	0	+	0.58	(0.523,0.58]	chr16	646377	66	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	51	2	4.34118	4.926825	5.51247	0.0372357	0.0230387	0.139793	0.102982
chr2	118109609	118109709	882907	0	+	0.4	(0.39,0.419]	chr2	99978	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	INSIG2	ENSG00000125629.16	ENST00000245787.9:ENST00000485520.5:ENST00000471186.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	1361	2	4.88918	4.926735	4.96429	3.99753e-4	1.87946e-5	0.0114335	8.05842e-4
chr2	190953993	190954083	976268	0	+	0.466667	(0.45,0.485]	chr2	107495	4	SS5_PROX	SS5_PROX:INTRON	GLS	ENSG00000115419.13	ENST00000320717.8:ENST00000457316.5:ENST00000409428.5:ENST00000412247.1	protein_coding	protein_coding	protein_coding	protein_coding	1	107	2	4.3114	4.926629999999999	5.54186	0.0243502	0.00111665	0.106588	0.0152867
chr10	87166898	87166997	4540524	0	+	0.313131	(0.29,0.33]	chr10	433012	84	INTRON	INTRON	SHLD2	ENSG00000122376.12	ENST00000298784.5:ENST00000298786.5	protein_coding	protein_coding	protein_coding	protein_coding	1	102	2	3.69617	4.926495	6.15682	0.0069975	0.00527084	0.0555241	0.044517
chr19	17145791	17145891	7218904	0	+	0.54	(0.523,0.58]	chr19	737730	3	SS5_PROX	SS5_PROX:INTRON	MYO9B	ENSG00000099331.14	ENST00000682292.1:ENST00000595618.5:ENST00000594824.5:ENST00000397274.6:ENST00000595641.5	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.65157	4.926305	5.20104	0.0787008	0.00648051	0.175203	0.0503748
chr6	52552924	52553024	3148207	0	-	0.42	(0.419,0.45]	chr6	307028	167	INTRON	INTRON	TRAM2	ENSG00000065308.5	ENST00000182527.4	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.7549	4.92604	5.09718	0.0888907	0.012235	0.183874	0.0757339
chr10	127429198	127429298	4612240	0	+	0.55	(0.523,0.58]	chr10	440909	28	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2	protein_coding	protein_coding	protein_coding	protein_coding	1	104	2	4.30157	4.925845	5.55012	0.0217068	0.00101591	0.100615	0.0143256
chr1	153982318	153982390	593146	0	-	0.458333	(0.45,0.485]	chr1	69202	3	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAB13	ENSG00000143545.10	ENST00000614713.4:ENST00000368575.5:ENST00000462680.5:ENST00000495720.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.50852	4.925765	5.34301	0.0328801	0.0302873	0.126768	0.122593
chr13	40605452	40605552	5692720	0	-	0.47	(0.45,0.485]	chr13	558751	423	INTRON	INTRON	FOXO1	ENSG00000150907.10	ENST00000379561.6:ENST00000655267.1:ENST00000660760.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.50852	4.925765	5.34301	0.0328801	0.0302873	0.126768	0.122593
chr14	54756487	54756586	5821352	0	+	0.454545	(0.45,0.485]	chr14	569119	12	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555192.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.50852	4.925765	5.34301	0.0328801	0.0302873	0.126768	0.122593
chr16	84087860	84087960	6648966	0	-	0.43	(0.419,0.45]	chr16	665116	4	SS3_PROX	SS3_PROX:INTRON	MBTPS1	ENSG00000140943.18	ENST00000343411.8:ENST00000569770.5:ENST00000563231.5:ENST00000565863.1:ENST00000570012.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.91849	4.925695	4.9329	0.0716557	0.0174488	0.168159	0.0928044
chr18	76437946	76438046	7179499	0	-	0.43	(0.419,0.45]	chr18	730080	573	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.91849	4.925695	4.9329	0.0716557	0.0174488	0.168159	0.0928044
chr21	44317024	44317118	7627896	0	+	0.62766	(0.58,1]	chr21	797349	1	INTRON	INTRON	PFKL	ENSG00000141959.17	ENST00000397961.6:ENST00000349048.9:ENST00000466134.5:ENST00000474114.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	50	2	4.29454	4.925675	5.55681	0.0305531	0.0126042	0.126768	0.0761905
chr16	89433323	89433423	6661167	0	-	0.47	(0.45,0.485]	chr16	666753	16	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	103	2	4.03897	4.925535	5.8121	0.0158765	0.00230814	0.0859576	0.0255029
chr1	52219773	52219873	125564	0	+	0.58	(0.523,0.58]	chr1	15551	29	INTRON	INTRON	ZFYVE9	ENSG00000157077.16	ENST00000287727.8:ENST00000371591.2:ENST00000357206.6:ENST00000361625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.83424	4.925505	5.01677	0.0482765	0.0144272	0.144601	0.0833845
chr11	70625429	70625529	5060527	0	-	0.53	(0.523,0.58]	chr11	492663	1221	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.83424	4.925505	5.01677	0.0482765	0.0144272	0.144601	0.0833845
chr11	70742884	70742983	5061710	0	-	0.525253	(0.523,0.58]	chr11	492701	250	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.83424	4.925505	5.01677	0.0482765	0.0144272	0.144601	0.0833845
chr13	113050517	113050616	5656140	0	+	0.565657	(0.523,0.58]	chr13	555180	33	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.83424	4.925505	5.01677	0.0482765	0.0144272	0.144601	0.0833845
chr16	89439813	89439913	6661232	0	-	0.53	(0.523,0.58]	chr16	666753	81	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.83424	4.925505	5.01677	0.0482765	0.0144272	0.144601	0.0833845
chr22	42575530	42575630	7820554	0	-	0.56	(0.523,0.58]	chr22	820216	2	SS5_PROX	SS5_PROX:INTRON	RRP7BP	ENSG00000182841.13	ENST00000357802.7:ENST00000566851.6:ENST00000692200.1:ENST00000692308.1:ENST00000437211.5:ENST00000458605.6:ENST00000690158.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	46	2	4.83424	4.925505	5.01677	0.0482765	0.0144272	0.144601	0.0833845
chr16	16158693	16158789	6556442	0	-	0.322917	(0.29,0.33]	chr16	653066	5	INTRON	INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.65868	4.925420000000001	5.19216	0.0735584	0.00712176	0.17026	0.0541241
chr4	127947914	127948013	2320887	0	-	0.313131	(0.29,0.33]	chr4	233316	19	INTRON	INTRON	MFSD8	ENSG00000164073.11	ENST00000296468.8:ENST00000641686.2:ENST00000641186.1:ENST00000641774.1:ENST00000641748.1:ENST00000641508.1:ENST00000641690.1:ENST00000641928.1:ENST00000641464.1:ENST00000641092.1:ENST00000641397.1:ENST00000641393.1:ENST00000641025.1:ENST00000641509.1:ENST00000642034.1:ENST00000641178.1:ENST00000641147.1:ENST00000641753.1:ENST00000641434.1:ENST00000641482.1:ENST00000641133.1:ENST00000515130.6:ENST00000641332.1:ENST00000641870.1:ENST00000641949.1:ENST00000641228.1:ENST00000641590.1:ENST00000641843.1:ENST00000642078.1:ENST00000641882.1:ENST00000641742.1:ENST00000641658.1:ENST00000513559.6:ENST00000509826.2:ENST00000642042.1:ENST00000641340.1:ENST00000641538.1:ENST00000641369.1:ENST00000642121.1:ENST00000641243.1:ENST00000505284.6:ENST00000641134.1:ENST00000641695.1:ENST00000641503.1:ENST00000641743.1:ENST00000641776.1:ENST00000641264.1:ENST00000642143.1:ENST00000508441.2:ENST00000641558.1:ENST00000641140.1:ENST00000641447.1:ENST00000641356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.65868	4.925420000000001	5.19216	0.0735584	0.00712176	0.17026	0.0541241
chr2	3289512	3289612	1081002	0	-	0.61	(0.58,1]	chr2	117633	68	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	94	2	4.18386	4.92542	5.66698	0.0102927	9.90719e-4	0.0684871	0.0141138
chr14	68482183	68482283	5865696	0	+	0.44	(0.419,0.45]	chr14	573027	42	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000557045.5:ENST00000554183.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	4.29342	4.925405	5.55739	0.0526662	0.0310506	0.167062	0.119758
chr17	42238227	42238327	6903482	0	-	0.43	(0.419,0.45]	chr17	702203	57	INTRON	INTRON	STAT5B	ENSG00000173757.10	ENST00000293328.8:ENST00000468312.1:ENST00000415845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	53	2	4.29342	4.925405	5.55739	0.0526662	0.0310506	0.167062	0.119758
chr8	9775855	9775953	3754937	0	+	0.438776	(0.419,0.45]	chr8	360888	31	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.29342	4.925405	5.55739	0.0526662	0.0310506	0.167062	0.119758
chr10	102651171	102651270	4576536	0	+	0.616162	(0.58,1]	chr10	437284	15	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1:ENST00000487927.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.82753	4.9253350000000005	5.02314	0.0427798	0.00638322	0.13762	0.0501889
chr10	103703006	103703106	4757130	0	-	0.61	(0.58,1]	chr10	454791	95	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.82753	4.9253350000000005	5.02314	0.0427798	0.00638322	0.13762	0.0501889
chr17	38743700	38743799	6895612	0	-	0.646465	(0.58,1]	chr17	700401	29	INTRON	INTRON	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000611883.4:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.82753	4.9253350000000005	5.02314	0.0427798	0.00638322	0.13762	0.0501889
chr10	59862287	59862387	4694396	0	-	0.49	(0.485,0.523]	chr10	447429	92	INTRON	INTRON	CCDC6	ENSG00000108091.11	ENST00000263102.7	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.33772	4.92531	5.5129	0.03818	0.0229047	0.140822	0.102982
chr16	85424621	85424721	6517317	0	+	0.5	(0.485,0.523]	chr16	646391	653	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.33772	4.92531	5.5129	0.03818	0.0229047	0.140822	0.102982
chr2	69464641	69464738	1175414	0	-	0.463918	(0.45,0.485]	chr2	127947	31	UTR3	UTR3:EXON_MRNA:INTRON	AAK1	ENSG00000115977.21	ENST00000409085.9:ENST00000606389.7:ENST00000409068.5	protein_coding	protein_coding	protein_coding	protein_coding	1	103	2	3.73402	4.9252400000000005	6.11646	0.00956667	0.0049945	0.0658012	0.0428203
chrX	47208180	47208275	7877693	0	+	0.484211	(0.45,0.485]	chrX	825627	14	INTRON	INTRON	UBA1	ENSG00000130985.17	ENST00000377351.8:ENST00000335972.11	protein_coding	protein_coding	protein_coding	protein_coding	1	103	2	3.73402	4.9252400000000005	6.11646	0.00956667	0.0049945	0.0658012	0.0428203
chr19	15642311	15642411	7215376	0	+	0.56	(0.523,0.58]	chr19	737133	3	INTRON	INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	135	2	2.74768	4.924735	7.10179	0.0411359	0.00133774	0.147756	0.0223452
chr2	165892478	165892577	1300577	0	-	0.242424	[0,0.29]	chr2	139463	16	UTR3	UTR3:EXON_MRNA:INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681167.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000680925.1:ENST00000679840.1:ENST00000680448.1:ENST00000681606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.85009	4.924665	4.99924	0.0347661	0.0124991	0.126529	0.0765738
chr20	37506436	37506535	7559832	0	-	0.535354	(0.523,0.58]	chr20	789576	26	INTRON	INTRON	BLCAP	ENSG00000166619.15	ENST00000411780.1:ENST00000467603.1	protein_coding	processed_transcript	protein_coding	processed_transcript	6	225	2	2.63749	4.92453	7.21157	0.0068166	0.00107726	0.0524738	0.0197563
chr10	103170438	103170536	4754360	0	-	0.357143	(0.33,0.36]	chr10	454574	6	INTRON	INTRON	NT5C2	ENSG00000076685.19	ENST00000675164.1:ENST00000343289.9:ENST00000404739.8:ENST00000675020.1:ENST00000674860.1:ENST00000676449.1:ENST00000676428.1:ENST00000674728.1:ENST00000675811.1:ENST00000369857.9:ENST00000675040.1:ENST00000675436.1:ENST00000674696.1:ENST00000675326.1:ENST00000675645.1:ENST00000470299.2:ENST00000452156.5:ENST00000461461.5:ENST00000467380.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	104	2	3.89271	4.9244699999999995	5.95623	0.0129408	0.00362349	0.0775979	0.0343232
chr2	85024502	85024602	843067	0	+	0.41	(0.39,0.419]	chr2	94837	101	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	2	295	2	4.86191	4.924215	4.98652	0.00246021	2.11768e-4	0.0313005	0.00471441
chr10	132711255	132711355	4618580	0	+	0.63	(0.58,1]	chr10	441181	4	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000487614.1:ENST00000498337.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.76284	4.92409	5.08534	0.0471737	0.00549379	0.143232	0.0454065
chr17	38744193	38744292	6895617	0	-	0.59596	(0.58,1]	chr17	700401	34	INTRON	INTRON	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000611883.4:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.76284	4.92409	5.08534	0.0471737	0.00549379	0.143232	0.0454065
chr2	239285174	239285274	1391560	0	-	0.6	(0.58,1]	chr2	148740	336	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	44	2	4.76284	4.92409	5.08534	0.0471737	0.00549379	0.143232	0.0454065
chr9	134371670	134371770	4261140	0	+	0.65	(0.58,1]	chr9	406311	447	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.76284	4.92409	5.08534	0.0471737	0.00549379	0.143232	0.0454065
chr17	7110469	7110567	6847738	0	-	0.571429	(0.523,0.58]	chr17	693423	12	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	600	2	4.59902	4.92401	5.249	8.00262e-4	1.37526e-5	0.016799	6.44262e-4
chr14	91108461	91108561	5898409	0	+	0.49	(0.485,0.523]	chr14	576283	4	SS5_PROX	SS5_PROX:INTRON	DGLUCY	ENSG00000133943.21	ENST00000521334.5:ENST00000522837.5:ENST00000518871.5	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.83072	4.923955	5.01719	0.0480495	0.0148956	0.144601	0.0847741
chr3	46959802	46959902	1758316	0	-	0.49	(0.485,0.523]	chr3	181164	184	INTRON	INTRON	CCDC12	ENSG00000160799.12	ENST00000425441.5:ENST00000683445.1:ENST00000292314.6:ENST00000605358.5:ENST00000488069.5:ENST00000603885.5:ENST00000446836.5:ENST00000494655.5:ENST00000604164.5:ENST00000604181.1:ENST00000605875.1:ENST00000460035.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	46	2	4.83072	4.923955	5.01719	0.0480495	0.0148956	0.144601	0.0847741
chr7	140048102	140048202	3724195	0	-	0.51	(0.485,0.523]	chr7	357570	7	INTRON	INTRON	PARP12	ENSG00000059378.13	ENST00000263549.8:ENST00000473341.5:ENST00000488726.5:ENST00000489809.5:ENST00000491598.5:ENST00000493262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.83072	4.923955	5.01719	0.0480495	0.0148956	0.144601	0.0847741
chr4	66124522	66124622	2049261	0	+	0.47	(0.45,0.485]	chr4	209651	17	INTRON	INTRON	ENSG00000249413	ENSG00000249413.2	ENST00000508572.1	lncRNA	lncRNA	lncRNA	lncRNA	0	46	2	4.77571	4.923954999999999	5.0722	0.0719884	0.00988295	0.168159	0.0664239
chr6	35494400	35494499	3125639	0	-	0.69697	(0.58,1]	chr6	304825	73	INTRON	INTRON	TEAD3	ENSG00000007866.22	ENST00000338863.13:ENST00000402886.9:ENST00000639578.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.88945	4.923795	4.95814	0.0388928	0.0074469	0.131324	0.0553519
chr1	167413114	167413214	265468	0	+	0.46	(0.45,0.485]	chr1	31291	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	POU2F1	ENSG00000143190.23	ENST00000367866.7:ENST00000271411.8:ENST00000429375.6:ENST00000367865.5:ENST00000541643.7:ENST00000648671.1:ENST00000367862.9:ENST00000443275.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	46	2	4.89685	4.923705	4.95056	0.0614781	0.0127826	0.158506	0.0773423
chr3	186084480	186084580	1972019	0	-	0.48	(0.45,0.485]	chr3	200538	2	SS3_PROX	SS3_PROX:INTRON	ETV5	ENSG00000244405.8	ENST00000306376.10:ENST00000434744.5:ENST00000472868.6:ENST00000440773.5:ENST00000421809.5:ENST00000413301.5:ENST00000422039.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.89685	4.923705	4.95056	0.0614781	0.0127826	0.158506	0.0773423
chr15	82209317	82209417	6339360	0	-	0.47	(0.45,0.485]	chr15	624925	435	INTRON	INTRON	EFL1	ENSG00000140598.16	ENST00000359445.8:ENST00000696330.1:ENST00000268206.12:ENST00000696336.1:ENST00000650113.1:ENST00000561389.2:ENST00000696337.1:ENST00000696329.1:ENST00000557939.2:ENST00000561331.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	4.59225	4.923674999999999	5.2551	0.0373953	0.0259502	0.130656	0.116361
chr7	79453471	79453559	3402810	0	+	0.590909	(0.58,1]	chr7	328669	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MAGI2-AS3	ENSG00000234456.10	ENST00000616796.4:ENST00000429408.6:ENST00000683943.1:ENST00000426835.6:ENST00000446159.6	lncRNA	lncRNA	lncRNA	lncRNA	1	112	2	3.75278	4.92364	6.0945	0.01024	3.47472e-4	0.0684871	0.00673552
chr1	11023723	11023822	27799	0	+	0.454545	(0.45,0.485]	chr1	3255	5	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000639599.1:ENST00000240185.8:ENST00000614757.4:ENST00000473869.5:ENST00000315091.7:ENST00000611963.4:ENST00000619555.4:ENST00000620632.4:ENST00000610369.4:ENST00000614494.1:ENST00000611136.4:ENST00000477447.6:ENST00000612542.1:ENST00000620505.1:ENST00000621573.1:ENST00000611008.4:ENST00000613177.1:ENST00000622108.1:ENST00000496840.1:ENST00000617757.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	277	2	4.32183	4.923455000000001	5.52508	0.00559992	3.17615e-5	0.0493906	0.0011739
chr19	8248233	8248333	7200366	0	+	0.53	(0.523,0.58]	chr19	734198	64	INTRON	INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	356	2	4.70651	4.92331	5.14011	0.00102277	7.83023e-5	0.0192115	0.00227715
chr1	30957478	30957578	434859	0	-	0.36	(0.33,0.36]	chr1	51492	31	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000527498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.57035	4.92296	5.27557	0.0945416	0.00707628	0.188571	0.0540197
chr3	134246424	134246524	1920291	0	-	0.38	(0.36,0.39]	chr3	195308	235	INTRON	INTRON	RYK	ENSG00000163785.13	ENST00000623711.4:ENST00000460933.5:ENST00000620660.4	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.6317	4.92285	5.214	0.0950937	0.00887999	0.189021	0.0618231
chr6	158256383	158256483	3061079	0	+	0.38	(0.36,0.39]	chr6	297572	237	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	47	2	4.6317	4.92285	5.214	0.0950937	0.00887999	0.189021	0.0618231
chr13	93285506	93285606	5618367	0	+	0.29	[0,0.29]	chr13	553052	575	INTRON	INTRON	GPC6	ENSG00000183098.11	ENST00000377047.9	protein_coding	protein_coding	protein_coding	protein_coding	1	103	2	4.4147	4.9227799999999995	5.43086	0.0170186	6.55393e-4	0.0889995	0.0105817
chr2	98488671	98488771	855798	0	+	0.48	(0.45,0.485]	chr2	96866	432	INTRON	INTRON	INPP4A	ENSG00000040933.16	ENST00000409016.8:ENST00000409851.8:ENST00000074304.9:ENST00000409463.5:ENST00000409540.7	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.41963	4.92275	5.42587	0.0355247	0.0290571	0.137983	0.116079
chr9	75060864	75060962	4318303	0	-	0.377551	(0.36,0.39]	chr9	412792	4	UTR3	UTR3:EXON_MRNA	NMRK1	ENSG00000106733.21	ENST00000376811.5:ENST00000361092.9	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.64834	4.922734999999999	5.19713	0.0462258	0.0272056	0.143138	0.119337
chr14	103105928	103106017	5921878	0	+	0.606742	(0.58,1]	chr14	579221	5	INTRON	INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	314	2	4.0538	4.922665	5.79153	0.00217711	4.91044e-6	0.0293136	3.11791e-4
chr1	31414153	31414242	80065	0	+	0.696629	(0.58,1]	chr1	9151	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SERINC2	ENSG00000168528.12	ENST00000373710.5:ENST00000536859.5:ENST00000487207.5:ENST00000373709.8:ENST00000536384.2:ENST00000491976.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	297	2	4.89007	4.9222649999999994	4.95446	0.00872525	2.75759e-4	0.0612699	0.00944319
chr1	89874441	89874541	181235	0	+	0.41	(0.39,0.419]	chr1	19585	274	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	3	399	2	3.88113	4.922255	5.96338	0.00661634	1.18277e-5	0.0540289	5.80144e-4
chr5	74824769	74824868	2692304	0	-	0.272727	[0,0.29]	chr5	265977	104	INTRON	INTRON	FAM169A	ENSG00000198780.13	ENST00000389156.9:ENST00000510496.5:ENST00000687041.1:ENST00000514215.5:ENST00000510609.5:ENST00000513277.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	97	2	3.86771	4.92211	5.97651	0.00625072	0.00299961	0.0523832	0.030427
chr2	36411677	36411777	758198	0	+	0.38	(0.36,0.39]	chr2	87976	145	INTRON	INTRON	CRIM1	ENSG00000150938.10	ENST00000280527.7:ENST00000426856.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.79458	4.922034999999999	5.04949	0.0563927	0.0207145	0.154188	0.102713
chr7	127387937	127388036	3704048	0	-	0.383838	(0.36,0.39]	chr7	355803	14	INTRON	INTRON	ZNF800	ENSG00000048405.11	ENST00000265827.8:ENST00000393313.5:ENST00000393312.5:ENST00000434602.5:ENST00000436992.5:ENST00000439506.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.79458	4.922034999999999	5.04949	0.0563927	0.0207145	0.154188	0.102713
chr3	24161642	24161741	1713133	0	-	0.414141	(0.39,0.419]	chr3	177953	88	INTRON	INTRON	THRB	ENSG00000151090.20	ENST00000646209.2:ENST00000396671.7:ENST00000356447.9:ENST00000646432.1:ENST00000643772.1:ENST00000645139.1:ENST00000642307.1:ENST00000644321.1:ENST00000646966.1:ENST00000416420.5:ENST00000280696.9:ENST00000413780.5:ENST00000447875.5:ENST00000453729.6:ENST00000431815.5:ENST00000447414.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.63037	4.921905000000001	5.21344	0.0963077	0.00893514	0.189169	0.0620271
chr9	7083743	7083842	4118237	0	+	0.343434	(0.33,0.36]	chr9	391979	66	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000381306.7:ENST00000381309.8:ENST00000428870.6:ENST00000420847.2:ENST00000495890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.73368	4.9219	5.11012	0.04702	0.0216127	0.143232	0.105648
chr6	21138248	21138348	2869987	0	+	0.4	(0.39,0.419]	chr6	279764	294	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.64779	4.92179	5.19579	0.0469937	0.0273358	0.143232	0.119337
chr13	112979758	112979858	5655419	0	+	0.63	(0.58,1]	chr13	555123	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.49116	4.92165	5.35214	0.0207449	0.0181452	0.102713	0.0921579
chr16	75237098	75237182	6644481	0	-	0.678571	(0.58,1]	chr16	664416	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000566982.1:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10:ENST00000569340.1:ENST00000564170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.49116	4.92165	5.35214	0.0207449	0.0181452	0.102713	0.0921579
chr21	43728038	43728136	7623874	0	+	0.663265	(0.58,1]	chr21	796696	43	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000438837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.49116	4.92165	5.35214	0.0207449	0.0181452	0.102713	0.0921579
chr9	134362289	134362389	4261046	0	+	0.66	(0.58,1]	chr9	406311	353	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	4.49116	4.92165	5.35214	0.0207449	0.0181452	0.102713	0.0921579
chr6	167891329	167891429	3073992	0	+	0.38	(0.36,0.39]	chr6	298835	3	SS5_PROX	SS5_PROX:INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	322	2	4.58055	4.921585	5.26262	0.00113176	6.51031e-4	0.0203069	0.0105193
chr15	52775505	52775605	6267273	0	-	0.42	(0.419,0.45]	chr15	617751	173	INTRON	INTRON	ONECUT1	ENSG00000169856.9	ENST00000305901.7:ENST00000561401.3:ENST00000560699.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	4.08324	4.921495	5.75975	0.0727147	0.0231013	0.199502	0.102982
chr18	77018777	77018877	7180502	0	-	0.43	(0.419,0.45]	chr18	730157	11	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000580402.5:ENST00000580473.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000495162.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	57	2	4.08324	4.921495	5.75975	0.0727147	0.0231013	0.199502	0.102982
chr15	83051857	83051955	6342511	0	-	0.357143	(0.33,0.36]	chr15	625236	13	INTRON	INTRON	BTBD1	ENSG00000064726.10	ENST00000261721.9:ENST00000379403.2:ENST00000559652.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	169	2	3.01489	4.92131	6.82773	0.00632011	0.0028048	0.0501889	0.0336304
chr12	64459395	64459493	5248825	0	+	0.438776	(0.419,0.45]	chr12	511772	10	INTRON	INTRON	TBK1	ENSG00000183735.11	ENST00000676684.1:ENST00000677499.1:ENST00000677641.1:ENST00000676654.1:ENST00000652537.1:ENST00000676809.1:ENST00000650790.1:ENST00000652657.1:ENST00000676912.1:ENST00000677686.1:ENST00000652389.1:ENST00000331710.10:ENST00000651262.1:ENST00000677632.1:ENST00000650997.1:ENST00000676551.1:ENST00000678430.1:ENST00000677545.1:ENST00000678180.1:ENST00000676930.1:ENST00000650762.1:ENST00000651947.1:ENST00000650786.1:ENST00000677831.1:ENST00000651014.1:ENST00000677549.1:ENST00000538890.5:ENST00000651878.1:ENST00000540417.1:ENST00000539810.1:ENST00000676469.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.69033	4.921235	5.15214	0.0958674	0.0109324	0.189038	0.0706366
chr12	132949268	132949367	5542024	0	-	0.434343	(0.419,0.45]	chr12	547064	6	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	47	2	4.69033	4.921235	5.15214	0.0958674	0.0109324	0.189038	0.0706366
chr15	56177861	56177961	6274829	0	-	0.42	(0.419,0.45]	chr15	618428	168	INTRON	INTRON	RFX7	ENSG00000181827.16	ENST00000674082.1:ENST00000559447.8:ENST00000673997.1:ENST00000673948.1:ENST00000560792.4	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.69033	4.921235	5.15214	0.0958674	0.0109324	0.189038	0.0706366
chr16	87741154	87741249	6656493	0	-	0.431579	(0.419,0.45]	chr16	665896	3	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.69033	4.921235	5.15214	0.0958674	0.0109324	0.189038	0.0706366
chr2	168094423	168094523	1308312	0	-	0.42	(0.419,0.45]	chr2	140215	188	INTRON	INTRON	STK39	ENSG00000198648.11	ENST00000487143.5:ENST00000355999.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.69033	4.921235	5.15214	0.0958674	0.0109324	0.189038	0.0706366
chr5	1499078	1499177	2609730	0	-	0.414141	(0.39,0.419]	chr5	259859	38	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000514484.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.79402	4.921085	5.04815	0.0572698	0.0208208	0.154343	0.102713
chr9	34399605	34399702	4296603	0	-	0.402062	(0.39,0.419]	chr9	410635	14	UTR3	UTR3:EXON_MRNA:INTRON	FAM219A	ENSG00000164970.15	ENST00000651358.1:ENST00000379080.5:ENST00000379081.5:ENST00000379084.5:ENST00000379087.5:ENST00000379089.5:ENST00000445726.5:ENST00000297620.8	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.79402	4.921085	5.04815	0.0572698	0.0208208	0.154343	0.102713
chr3	152332612	152332712	1599024	0	+	0.41	(0.39,0.419]	chr3	168984	303	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	1	106	2	3.71423	4.92099	6.12775	0.0115883	0.00594315	0.0731017	0.0479866
chr10	79158955	79159054	4532946	0	+	0.606061	(0.58,1]	chr10	432432	188	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.58025	4.920815	5.26138	0.021217	0.0172566	0.0996078	0.0923809
chr18	77118228	77118328	7181503	0	-	0.65	(0.58,1]	chr18	730186	126	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1:ENST00000583798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.58025	4.920815	5.26138	0.021217	0.0172566	0.0996078	0.0923809
chr2	219572112	219572210	1036512	0	+	0.632653	(0.58,1]	chr2	112995	23	INTRON	INTRON	INHA	ENSG00000123999.5	ENST00000489456.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	46	2	4.58025	4.920815	5.26138	0.021217	0.0172566	0.0996078	0.0923809
chrX	108599370	108599465	7932500	0	+	0.273684	[0,0.29]	chrX	830179	1	INTRON	INTRON	COL4A5	ENSG00000188153.14	ENST00000328300.11:ENST00000361603.7:ENST00000483338.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.54061	4.9207149999999995	5.30082	0.0235212	0.0212677	0.110758	0.0996805
chr17	27491042	27491142	6702698	0	+	0.29	[0,0.29]	chr17	672853	68	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000583370.5:ENST00000398988.7:ENST00000268763.10:ENST00000509603.6:ENST00000582311.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	53	2	4.14609	4.92066	5.69523	0.0482299	0.010611	0.159496	0.0697759
chr20	3544375	3544474	7420297	0	+	0.444444	(0.419,0.45]	chr20	772918	37	INTRON	INTRON	ATRN	ENSG00000088812.18	ENST00000262919.10:ENST00000446916.2	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.85365	4.92066	4.98767	0.0669167	0.0197641	0.16272	0.100774
chr17	12076295	12076394	6680433	0	+	0.40404	(0.39,0.419]	chr17	670598	61	INTRON	INTRON	MAP2K4	ENSG00000065559.15	ENST00000582183.5:ENST00000415385.7:ENST00000602305.5:ENST00000602375.5:ENST00000602811.5:ENST00000353533.10:ENST00000602537.5:ENST00000602686.5:ENST00000538465.7:ENST00000582897.5:ENST00000581941.5:ENST00000579089.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	288	2	4.5173	4.920495	5.32369	0.00461698	8.01033e-5	0.0442497	0.00231989
chr21	17520961	17521061	7599948	0	+	0.42	(0.419,0.45]	chr21	794111	74	INTRON	INTRON	CXADR	ENSG00000154639.19	ENST00000284878.12:ENST00000400166.5:ENST00000400169.1:ENST00000400165.5:ENST00000356275.10	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.47684	4.920395	5.36395	0.0407485	0.0389508	0.142578	0.135868
chr15	73708545	73708617	6150728	0	+	0.472222	(0.45,0.485]	chr15	604958	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CD276	ENSG00000103855.18	ENST00000537340.6:ENST00000318424.9:ENST00000318443.10:ENST00000561213.5:ENST00000560928.5:ENST00000564751.5:ENST00000561176.5:ENST00000557951.1:ENST00000559073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.7111	4.92024	5.12938	0.0781398	0.00873194	0.175203	0.0612699
chr1	39116206	39116306	93783	0	+	0.37	(0.36,0.39]	chr1	11068	101	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000689911.1:ENST00000567887.5:ENST00000372915.8:ENST00000472385.2:ENST00000693209.1:ENST00000524432.5:ENST00000467673.5:ENST00000688212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	147	2	3.81287	4.920205	6.02754	0.0133452	0.00152881	0.0789398	0.0191213
chr1	43564804	43564903	107087	0	+	0.656566	(0.58,1]	chr1	13192	105	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	94	2	3.72143	4.92004	6.11865	0.00429384	0.00366718	0.042386	0.0346803
chr11	72773248	72773348	5070674	0	-	0.6	(0.58,1]	chr11	493498	135	INTRON	INTRON	ARAP1:STARD10	ENSG00000186635.15:ENSG00000214530.10	ENST00000359373.9:ENST00000334805.11:ENST00000543304.5:ENST00000538536.5:ENST00000538437.5:ENST00000545082.5:ENST00000537947.5:ENST00000542989.5:ENST00000546314.5:ENST00000535267.1:ENST00000539138.1:ENST00000535054.1:ENST00000536290.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	44	2	4.6951	4.920035	5.14497	0.0521567	0.00474658	0.148503	0.0413976
chr12	132955942	132956042	5542091	0	-	0.77	(0.58,1]	chr12	547065	3	SS5_PROX	SS5_PROX:INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	44	2	4.6951	4.920035	5.14497	0.0521567	0.00474658	0.148503	0.0413976
chr2	134451037	134451136	898758	0	+	0.50505	(0.485,0.523]	chr2	101298	23	UTR3	UTR3:EXON_MRNA	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	2	142	2	3.95873	4.91994	5.88115	0.012541	7.71874e-4	0.0761905	0.0118365
chr1	61119425	61119525	146474	0	+	0.34	(0.33,0.36]	chr1	17144	72	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	125	2	3.43786	4.91985	6.40184	0.0264583	4.34805e-4	0.111024	0.007918
chr11	64186921	64187021	4867967	0	+	0.48	(0.45,0.485]	chr11	466977	4	SS5_PROX	SS5_PROX:INTRON	STIP1	ENSG00000168439.17	ENST00000358794.9:ENST00000305218.9:ENST00000536973.5:ENST00000538945.5:ENST00000543847.1:ENST00000540736.1:ENST00000540501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.88567	4.919735	4.9538	0.0569772	0.0146126	0.154343	0.0837727
chr8	127173589	127173689	4066722	0	-	0.47	(0.45,0.485]	chr8	387398	41	INTRON	INTRON	CASC19	ENSG00000254166.3	ENST00000642100.1:ENST00000641912.1:ENST00000641421.1:ENST00000641701.1:ENST00000641991.1:ENST00000641588.1:ENST00000642088.1:ENST00000641425.1:ENST00000641706.1:ENST00000641496.1:ENST00000641013.1:ENST00000641262.1:ENST00000641174.1:ENST00000642102.1:ENST00000641615.1:ENST00000641582.1:ENST00000641487.1:ENST00000641321.1:ENST00000641719.1:ENST00000642010.1:ENST00000641578.1:ENST00000641510.1:ENST00000641604.1:ENST00000641056.1:ENST00000641642.1:ENST00000641362.1:ENST00000641365.1:ENST00000642077.1:ENST00000641179.1:ENST00000642126.1:ENST00000641411.1:ENST00000641357.1:ENST00000641746.2:ENST00000641073.1:ENST00000641298.1:ENST00000641001.1:ENST00000641674.2:ENST00000641828.1:ENST00000641029.1:ENST00000641547.1:ENST00000642134.1:ENST00000641696.1:ENST00000641480.1:ENST00000641187.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	46	2	4.88567	4.919735	4.9538	0.0569772	0.0146126	0.154343	0.0837727
chr2	88625313	88625409	1215852	0	-	0.447917	(0.419,0.45]	chr2	131043	5	INTRON	INTRON	EIF2AK3	ENSG00000172071.15	ENST00000303236.9:ENST00000652099.1:ENST00000682892.1:ENST00000652423.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.56048	4.91958	5.27868	0.0457732	0.0337332	0.142336	0.133139
chr5	59214079	59214179	2666265	0	-	0.45	(0.419,0.45]	chr5	264317	202	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000503258.5:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7:ENST00000502575.1:ENST00000621323.4:ENST00000515324.1:ENST00000638939.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	49	2	4.56048	4.91958	5.27868	0.0457732	0.0337332	0.142336	0.133139
chr5	96650660	96650760	2486892	0	+	0.44	(0.419,0.45]	chr5	247637	1043	INTRON	INTRON	CAST	ENSG00000153113.24	ENST00000505143.5	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.56048	4.91958	5.27868	0.0457732	0.0337332	0.142336	0.133139
chrX	8095556	8095656	7839634	0	+	0.43	(0.419,0.45]	chrX	822365	325	INTRON	INTRON	ENSG00000285679	ENSG00000285679.2	ENST00000659022.1:ENST00000649338.1	lncRNA	lncRNA	lncRNA	lncRNA	0	49	2	4.56048	4.91958	5.27868	0.0457732	0.0337332	0.142336	0.133139
chr17	17686649	17686748	6688901	0	+	0.646465	(0.58,1]	chr17	671338	17	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	1	97	2	3.52722	4.919575	6.31193	0.00611467	0.00289626	0.0489549	0.03418
chr9	124258305	124258361	4235497	0	+	0.75	(0.58,1]	chr9	402073	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	NEK6	ENSG00000119408.17	ENST00000373603.5:ENST00000540326.5:ENST00000320246.10:ENST00000373600.7:ENST00000545174.5:ENST00000444973.5:ENST00000454453.5	protein_coding	protein_coding	protein_coding	protein_coding	1	97	2	3.52722	4.919575	6.31193	0.00611467	0.00289626	0.0489549	0.03418
chr12	132538940	132539040	5353005	0	+	0.63	(0.58,1]	chr12	523670	106	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.89007	4.919445	4.94882	0.0354433	0.00872525	0.127188	0.0612699
chr14	68902376	68902476	5999365	0	-	0.66	(0.58,1]	chr14	588711	12	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6:ENST00000683261.1:ENST00000684096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.89007	4.919445	4.94882	0.0354433	0.00872525	0.127188	0.0612699
chr17	17722627	17722727	6689261	0	+	0.65	(0.58,1]	chr17	671338	377	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.89007	4.919445	4.94882	0.0354433	0.00872525	0.127188	0.0612699
chr2	20218407	20218507	1096937	0	-	0.6	(0.58,1]	chr2	119640	126	INTRON	INTRON	SDC1	ENSG00000115884.11	ENST00000254351.9:ENST00000381150.5:ENST00000403076.5:ENST00000429035.1:ENST00000482879.5:ENST00000447124.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.89007	4.919445	4.94882	0.0354433	0.00872525	0.127188	0.0612699
chr3	12966192	12966291	1688791	0	-	0.646465	(0.58,1]	chr3	176520	52	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.89007	4.919445	4.94882	0.0354433	0.00872525	0.127188	0.0612699
chr5	127048315	127048415	2754188	0	-	0.46	(0.45,0.485]	chr5	269863	4	SS3_PROX	SS3_PROX:INTRON	C5orf63	ENSG00000164241.14	ENST00000535381.6:ENST00000508527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	102	2	3.90828	4.91931	5.93034	0.0130794	0.00323103	0.0782396	0.0319521
chr1	1051815	1051892	1279	0	+	0.675325	(0.58,1]	chr1	278	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	1	115	2	3.93773	4.9191400000000005	5.90055	0.00708574	6.1741e-4	0.0558168	0.0101143
chr6	130873038	130873135	3260267	0	-	0.474227	(0.45,0.485]	chr6	315475	1	INTRON	INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000528282.5:ENST00000531410.5:ENST00000392427.7:ENST00000530757.5:ENST00000368128.6:ENST00000527411.5:ENST00000524581.5:ENST00000525271.5:ENST00000529208.5:ENST00000525193.5:ENST00000527659.5:ENST00000527017.6:ENST00000527423.5:ENST00000456097.6:ENST00000525198.1:ENST00000533912.1:ENST00000534166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	197	2	3.78752	4.91906	6.0506	0.00671773	9.38528e-4	0.0541867	0.0135546
chr11	8622216	8622315	4986468	0	-	0.313131	(0.29,0.33]	chr11	482514	4	SS3_PROX	SS3_PROX:INTRON	TRIM66	ENSG00000166436.17	ENST00000402157.7:ENST00000646038.2:ENST00000481014.6:ENST00000530502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	103	2	4.20689	4.918365	5.62984	0.0174273	0.00140294	0.0901531	0.0180301
chr15	51297741	51297841	6258772	0	-	0.41	(0.39,0.419]	chr15	616673	192	INTRON	INTRON	CYP19A1	ENSG00000137869.16	ENST00000396402.6:ENST00000396404.8:ENST00000439712.6:ENST00000557934.5:ENST00000561075.5:ENST00000558328.5:ENST00000453807.6:ENST00000557858.5:ENST00000559980.5:ENST00000405011.6:ENST00000559646.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	0	54	2	4.20027	4.91806	5.63585	0.0583327	0.025023	0.175217	0.10758
chr2	10190603	10190703	718207	0	+	0.5	(0.485,0.523]	chr2	84002	345	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	122	2	3.60466	4.91803	6.2314	0.0185431	4.86354e-4	0.0929479	0.00857996
chr20	62272759	62272808	7506834	0	+	0.55102	(0.523,0.58]	chr20	782705	1	INTRON	INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000642957.1:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	100	2	4.01555	4.91797	5.82039	0.0139724	0.00221587	0.0805959	0.0247044
chr22	42646240	42646340	7821293	0	-	0.68	(0.58,1]	chr22	820388	2	SS5_PROX	SS5_PROX:INTRON	CYB5R3	ENSG00000100243.22	ENST00000693367.1:ENST00000352397.10:ENST00000361740.9:ENST00000692152.1:ENST00000693363.1:ENST00000689795.1:ENST00000686523.1:ENST00000407332.6:ENST00000687198.1:ENST00000689001.1:ENST00000687183.1:ENST00000691295.1:ENST00000407623.8:ENST00000402438.6:ENST00000690835.1:ENST00000689195.1:ENST00000688244.1:ENST00000690993.1:ENST00000689239.1:ENST00000692344.1:ENST00000438270.2:ENST00000686129.1:ENST00000466276.2:ENST00000693716.1:ENST00000688004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	133	2	4.42424	4.917590000000001	5.41094	0.00256182	0.00240622	0.0320805	0.0261006
chr20	381600	381683	7414315	0	+	0.674699	(0.58,1]	chr20	772273	1	SS5_PROX	SS5_PROX:INTRON	TRIB3	ENSG00000101255.12	ENST00000615226.4:ENST00000217233.9:ENST00000449710.5:ENST00000422053.3	protein_coding	protein_coding	protein_coding	protein_coding	2	124	2	3.69046	4.917365	6.14427	0.00407804	0.00114616	0.0413652	0.0156638
chr10	45857691	45857791	4678146	0	-	0.53	(0.523,0.58]	chr10	446183	24	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000610690.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	0	46	2	4.58058	4.917305000000001	5.25403	0.0860403	0.00573579	0.181766	0.0467736
chr3	50624378	50624478	1470526	0	+	0.57	(0.523,0.58]	chr3	157793	62	INTRON	INTRON	MAPKAPK3	ENSG00000114738.11	ENST00000446044.5:ENST00000430409.5:ENST00000621469.5:ENST00000357955.6:ENST00000457064.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.58058	4.917305000000001	5.25403	0.0860403	0.00573579	0.181766	0.0467736
chr8	127911206	127911305	3918965	0	+	0.525253	(0.523,0.58]	chr8	374216	83	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000521122.2:ENST00000520913.2:ENST00000519481.6:ENST00000651568.1:ENST00000669082.1:ENST00000665166.1:ENST00000656948.1:ENST00000671088.1:ENST00000664924.1:ENST00000670204.1:ENST00000652695.1:ENST00000670602.1:ENST00000651664.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1:ENST00000653406.1	lncRNA	lncRNA	lncRNA	lncRNA	0	46	2	4.58058	4.917305000000001	5.25403	0.0860403	0.00573579	0.181766	0.0467736
chr5	172854612	172854710	2590620	0	+	0.704082	(0.58,1]	chr5	257050	8	INTRON	INTRON	ERGIC1	ENSG00000113719.17	ENST00000393784.8:ENST00000690799.1:ENST00000686615.1:ENST00000684928.1:ENST00000519860.3:ENST00000691612.1:ENST00000687901.1:ENST00000689975.1:ENST00000326654.7:ENST00000693299.1:ENST00000687702.1:ENST00000685391.1:ENST00000520326.6:ENST00000520642.5:ENST00000686955.1:ENST00000689977.1:ENST00000523291.5:ENST00000692557.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	48	2	4.3962	4.91686	5.43752	0.0250928	0.0156166	0.114418	0.0849828
chr9	124334699	124334798	4236278	0	+	0.666667	(0.58,1]	chr9	402147	69	INTRON	INTRON	NEK6	ENSG00000119408.17	ENST00000373603.5:ENST00000540326.5:ENST00000320246.10:ENST00000373600.7:ENST00000545174.5:ENST00000444973.5:ENST00000454453.5:ENST00000425237.5:ENST00000546191.5:ENST00000422297.5:ENST00000539416.5:ENST00000394199.6	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.3962	4.91686	5.43752	0.0250928	0.0156166	0.114418	0.0849828
chr9	134369874	134369973	4261122	0	+	0.626263	(0.58,1]	chr9	406311	429	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	4.3962	4.91686	5.43752	0.0250928	0.0156166	0.114418	0.0849828
chr2	11814687	11814787	722755	0	+	0.62	(0.58,1]	chr2	84466	2	SS3_PROX	SS3_PROX:INTRON	LPIN1	ENSG00000134324.12	ENST00000449576.6:ENST00000425416.6:ENST00000396097.5:ENST00000396099.5:ENST00000256720.6:ENST00000674199.1:ENST00000404113.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	110	2	3.51497	4.9165849999999995	6.3182	0.0161632	1.74994e-4	0.0872435	0.00410754
chr18	26080723	26080823	7133219	0	-	0.35	(0.33,0.36]	chr18	725896	3	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	SS18	ENSG00000141380.14	ENST00000415083.7:ENST00000542420.6:ENST00000579640.5:ENST00000269138.9:ENST00000269137.11:ENST00000585121.5:ENST00000539244.6:ENST00000585241.5:ENST00000578954.5:ENST00000579061.5:ENST00000577636.5:ENST00000584083.5:ENST00000578700.5:ENST00000582792.5:ENST00000581021.5:ENST00000577572.5:ENST00000582448.5:ENST00000581570.5:ENST00000577751.5:ENST00000580751.5:ENST00000580642.2:ENST00000578595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	46	2	4.77355	4.916460000000001	5.05937	0.0735809	0.0112642	0.17026	0.071709
chrX	110107979	110108079	7934681	0	+	0.48	(0.45,0.485]	chrX	830394	254	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000461715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.67139	4.91644	5.16149	0.0427653	0.0223378	0.13762	0.108193
chr16	85438515	85438615	6517456	0	+	0.53	(0.523,0.58]	chr16	646391	792	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.5249	4.916425	5.30795	0.0315825	0.0266135	0.120781	0.118113
chr16	85512684	85512784	6518198	0	+	0.57	(0.523,0.58]	chr16	646391	1534	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.5249	4.916425	5.30795	0.0315825	0.0266135	0.120781	0.118113
chr19	48903749	48903846	7280381	0	+	0.536082	(0.523,0.58]	chr19	748036	23	INTRON	INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000443560.1:ENST00000411700.5:ENST00000451312.5:ENST00000424608.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	4.5249	4.916425	5.30795	0.0315825	0.0266135	0.120781	0.118113
chr2	61387903	61388002	1156861	0	-	0.313131	(0.29,0.33]	chr2	126793	42	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.58769	4.9164200000000005	5.24515	0.0806047	0.00631714	0.177452	0.0501889
chr1	226943379	226943479	355626	0	+	0.58	(0.523,0.58]	chr1	40145	24	INTRON	INTRON	COQ8A	ENSG00000163050.18	ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000489044.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.7629	4.916235	5.06957	0.0448011	0.0167014	0.140478	0.0917029
chr19	41318863	41318963	7380987	0	-	0.56	(0.523,0.58]	chr19	765964	158	INTRON	INTRON	TGFB1	ENSG00000105329.11	ENST00000598758.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	46	2	4.7629	4.916235	5.06957	0.0448011	0.0167014	0.140478	0.0917029
chrX	1416491	1416589	7965644	0	-	0.571429	(0.523,0.58]	chrX	834254	33	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.7629	4.916235	5.06957	0.0448011	0.0167014	0.140478	0.0917029
chr11	70793745	70793845	5062219	0	-	0.34	(0.33,0.36]	chr11	492701	759	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.89468	4.916225000000001	4.93777	0.0629186	0.0144674	0.160778	0.0833845
chr18	69841975	69842074	7087606	0	+	0.333333	(0.33,0.36]	chr18	722178	7	UTR3	UTR3:EXON_MRNA	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.89468	4.916225000000001	4.93777	0.0629186	0.0144674	0.160778	0.0833845
chr5	43539435	43539535	2653444	0	-	0.34	(0.33,0.36]	chr5	263403	4	SS3_PROX	SS3_PROX:INTRON	PAIP1	ENSG00000172239.14	ENST00000306846.8:ENST00000436644.6:ENST00000338972.8:ENST00000514514.5:ENST00000504639.5:ENST00000511321.5:ENST00000508537.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.89468	4.916225000000001	4.93777	0.0629186	0.0144674	0.160778	0.0833845
chrX	24200335	24200435	7854831	0	+	0.45	(0.419,0.45]	chrX	823856	202	INTRON	INTRON	ZFX	ENSG00000005889.16	ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000379177.5:ENST00000459724.1:ENST00000338565.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	151	2	2.94973	4.916195	6.8826599999999996	0.0133526	0.00374639	0.0801101	0.0393941
chr18	77033976	77034076	7180654	0	-	0.38	(0.36,0.39]	chr18	730157	163	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000580402.5:ENST00000580473.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000495162.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	4.30212	4.915995000000001	5.52987	0.0494303	0.0287883	0.160725	0.115991
chr13	102814131	102814230	5648461	0	+	0.50505	(0.485,0.523]	chr13	554384	60	INTRON	INTRON	BIVM	ENSG00000134897.14	ENST00000257336.6:ENST00000651008.1:ENST00000651949.1:ENST00000652006.1:ENST00000651855.1:ENST00000651048.1:ENST00000448849.3:ENST00000652766.1:ENST00000652643.1:ENST00000651228.1:ENST00000651808.1:ENST00000474443.2:ENST00000652084.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	46	2	4.581	4.9157399999999996	5.25048	0.085711	0.0059614	0.181766	0.0479866
chr18	76424260	76424360	7179362	0	-	0.52	(0.485,0.523]	chr18	730080	436	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	1	121	2	3.44992	4.915705	6.38149	0.0240794	3.18797e-4	0.106575	0.00634142
chr20	37395169	37395268	7473054	0	+	0.59596	(0.58,1]	chr20	778188	5	INTRON	INTRON	SRC	ENSG00000197122.13	ENST00000692112.1:ENST00000692423.1:ENST00000373578.7:ENST00000373567.6:ENST00000373558.2:ENST00000358208.9:ENST00000489153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	93	2	3.79235	4.91564	6.03893	0.00503456	0.00302484	0.0464858	0.0305643
chr7	105320167	105320267	3667300	0	-	0.37	(0.36,0.39]	chr7	353743	132	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	105	2	3.82995	4.91547	6.00099	0.0139273	0.00449477	0.0805916	0.0399512
chr1	8675705	8675805	394311	0	-	0.31	(0.29,0.33]	chr1	45065	189	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000468247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.75412	4.91544	5.07676	0.0412683	0.0180435	0.136301	0.0952934
chr18	69487227	69487327	7084045	0	+	0.36	(0.33,0.36]	chr18	722115	156	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	1	105	2	4.11609	4.91524	5.71439	0.0191308	0.00205621	0.0952349	0.0235218
chr10	46807105	46807204	4484754	0	+	0.454545	(0.45,0.485]	chr10	428921	48	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000688259.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	138	2	3.66424	4.914875	6.16551	0.00879664	0.00192579	0.0630845	0.022451
chr1	241509571	241509670	695203	0	-	0.50505	(0.485,0.523]	chr1	81965	9	EXON_MRNA	EXON_MRNA:INTRON	FH	ENSG00000091483.8	ENST00000493477.2:ENST00000684483.1:ENST00000684161.1:ENST00000682162.1:ENST00000366560.4:ENST00000682567.1:ENST00000683521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.75939	4.91469	5.06999	0.0445854	0.0172254	0.140478	0.0923809
chr14	91157038	91157138	5898903	0	+	0.51	(0.485,0.523]	chr14	576319	78	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000521334.5:ENST00000522837.5:ENST00000518871.5:ENST00000520328.5:ENST00000521081.5:ENST00000524232.5:ENST00000522170.5:ENST00000256324.15:ENST00000519950.5:ENST00000523879.5:ENST00000521077.6:ENST00000518665.6:ENST00000519994.5:ENST00000523837.5:ENST00000518868.5:ENST00000518649.5:ENST00000519019.5:ENST00000523816.5:ENST00000517518.5:ENST00000428926.6:ENST00000517362.5:ENST00000523894.5:ENST00000522322.5:ENST00000523771.5:ENST00000521064.5:ENST00000525393.6:ENST00000412671.6:ENST00000298858.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	46	2	4.75939	4.91469	5.06999	0.0445854	0.0172254	0.140478	0.0923809
chr16	30991631	30991730	6579797	0	-	0.494949	(0.485,0.523]	chr16	657721	25	UTR3	UTR3:EXON_MRNA	STX1B	ENSG00000099365.11	ENST00000215095.11	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.75939	4.91469	5.06999	0.0445854	0.0172254	0.140478	0.0923809
chr9	133855287	133855387	4428951	0	-	0.52	(0.485,0.523]	chr9	423304	206	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.75939	4.91469	5.06999	0.0445854	0.0172254	0.140478	0.0923809
chr10	72713944	72714039	4506469	0	+	0.526316	(0.523,0.58]	chr10	431184	12	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5:ENST00000604152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.43597	4.91462	5.39327	0.0313935	0.0277354	0.127822	0.112851
chr12	132952654	132952754	5542058	0	-	0.5	(0.485,0.523]	chr12	547064	40	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	134	2	3.51668	4.91441	6.31214	0.00589975	0.00264036	0.0506158	0.0279436
chr1	6544525	6544625	389740	0	-	0.6	(0.58,1]	chr1	44718	3	SS5_PROX	SS5_PROX:INTRON	NOL9	ENSG00000162408.11	ENST00000377705.6:ENST00000464383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.66416	4.914345	5.16453	0.0249802	0.0144381	0.10758	0.0833845
chr17	40351458	40351531	6734475	0	+	0.69863	(0.58,1]	chr17	677355	2	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	RARA	ENSG00000131759.18	ENST00000254066.10:ENST00000394089.6:ENST00000425707.7:ENST00000394086.7:ENST00000394081.7:ENST00000475125.1:ENST00000420042.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.66416	4.914345	5.16453	0.0249802	0.0144381	0.10758	0.0833845
chr10	45856593	45856693	4678135	0	-	0.5	(0.485,0.523]	chr10	446183	13	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000610690.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	1	123	2	3.16729	4.914315	6.66134	0.0380541	1.41724e-4	0.131324	0.00352935
chr13	98259801	98259901	5634829	0	+	0.45	(0.419,0.45]	chr13	553480	146	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	3	433	2	4.23702	4.91395	5.59088	7.2257e-4	5.25039e-4	0.0158739	0.00903907
chr3	13064104	13064204	1689780	0	-	0.48	(0.45,0.485]	chr3	176555	111	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.64346	4.91392	5.18438	0.0850039	0.00773818	0.181766	0.0568726
chr9	93624369	93624469	4184133	0	+	0.42	(0.419,0.45]	chr9	397705	471	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.62273	4.913905	5.20508	0.103601	0.00979452	0.197541	0.0664239
chr16	18520160	18520244	6559085	0	-	0.428571	(0.419,0.45]	chr16	653701	1	SS5_PROX	SS5_PROX:INTRON	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000381474.7:ENST00000564991.5:ENST00000621364.4:ENST00000622306.5:ENST00000543392.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.63955	4.913795	5.18804	0.051668	0.0293406	0.148503	0.125102
chr5	131533033	131533132	2756293	0	-	0.424242	(0.419,0.45]	chr5	270123	1	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	48	2	4.63955	4.913795	5.18804	0.051668	0.0293406	0.148503	0.125102
chr6	1738278	1738377	3080254	0	-	0.363636	(0.36,0.39]	chr6	299476	114	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	129	2	3.16425	4.913545	6.66284	0.0430514	2.49931e-4	0.138389	0.00531531
chr22	37493585	37493685	7808116	0	-	0.54	(0.523,0.58]	chr22	818360	1	SS5_PROX	SS5_PROX:INTRON	CARD10	ENSG00000100065.15	ENST00000403299.5:ENST00000251973.10:ENST00000488141.5:ENST00000467812.1:ENST00000406271.7:ENST00000437756.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	52	2	4.23973	4.913265	5.5868	0.0444247	0.020474	0.153511	0.0979776
chr21	34843599	34843699	7655380	0	-	0.62	(0.58,1]	chr21	801030	86	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000469087.1:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.62403	4.913130000000001	5.20223	0.0578275	0.00411607	0.154343	0.0374453
chr3	134372143	134372243	1920520	0	-	0.59	(0.58,1]	chr3	195369	3	SS3_PROX	SS3_PROX:INTRON	AMOTL2	ENSG00000114019.15	ENST00000249883.10:ENST00000514516.5:ENST00000422605.6:ENST00000513145.1:ENST00000512955.1:ENST00000511759.1:ENST00000510560.1:ENST00000504234.1:ENST00000506107.1:ENST00000515172.1:ENST00000502491.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.62403	4.913130000000001	5.20223	0.0578275	0.00411607	0.154343	0.0374453
chr9	2017605	2017702	4105275	0	+	0.721649	(0.58,1]	chr9	390911	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SMARCA2	ENSG00000080503.24	ENST00000637383.1:ENST00000357248.8:ENST00000450198.6:ENST00000634287.1:ENST00000637103.1:ENST00000349721.8:ENST00000636559.1:ENST00000634536.1:ENST00000636903.1:ENST00000637352.1:ENST00000637097.1:ENST00000457226.2:ENST00000382194.6:ENST00000439732.6:ENST00000634760.1:ENST00000637806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.62403	4.913130000000001	5.20223	0.0578275	0.00411607	0.154343	0.0374453
chr11	70739686	70739786	5061678	0	-	0.43	(0.419,0.45]	chr11	492701	218	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.78575	4.91309	5.04043	0.0625897	0.0224633	0.160305	0.108193
chr15	62504797	62504897	6123872	0	+	0.49	(0.485,0.523]	chr15	602357	285	INTRON	INTRON	TLN2	ENSG00000171914.17	ENST00000636159.2:ENST00000561197.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.43249	4.91309	5.39369	0.0322299	0.0275819	0.12988	0.112782
chr22	21675714	21675814	7690781	0	+	0.57	(0.523,0.58]	chr22	804829	2	INTRON	INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000458567.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000679586.1:ENST00000680094.1:ENST00000484439.5:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000680022.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.60868	4.912974999999999	5.21727	0.0361597	0.0226775	0.127853	0.108193
chr9	123100418	123100510	4235440	0	+	0.565217	(0.523,0.58]	chr9	402054	5	INTRON	INTRON	RABGAP1	ENSG00000011454.18	ENST00000456584.5:ENST00000373647.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.60868	4.912974999999999	5.21727	0.0361597	0.0226775	0.127853	0.108193
chr1	41073519	41073618	453229	0	-	0.373737	(0.36,0.39]	chr1	54615	24	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000372595.5:ENST00000326197.11:ENST00000695336.1:ENST00000456518.3:ENST00000695337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.56076	4.91292	5.26508	0.103289	0.00795848	0.197541	0.0578938
chr10	75497893	75497993	4521137	0	+	0.38	(0.36,0.39]	chr10	432249	463	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.56076	4.91292	5.26508	0.103289	0.00795848	0.197541	0.0578938
chr7	128757287	128757386	3474565	0	+	0.424242	(0.419,0.45]	chr7	335740	22	INTRON	INTRON	CALU	ENSG00000128595.17	ENST00000535011.6:ENST00000542996.6:ENST00000249364.9:ENST00000449187.6:ENST00000479257.5	protein_coding	protein_coding	protein_coding	protein_coding	2	170	2	2.54153	4.912635	7.28374	0.0316792	0.00184728	0.128518	0.0268409
chr3	171732545	171732644	1957773	0	-	0.373737	(0.36,0.39]	chr3	199043	61	INTRON	INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9:ENST00000498278.5:ENST00000475273.6:ENST00000440204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	105	2	3.9354	4.91251	5.88962	0.0166261	0.00347533	0.0884836	0.0336331
chr17	17792332	17792432	6689960	0	+	0.6	(0.58,1]	chr17	671348	98	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2:ENST00000395774.1	protein_coding	protein_coding	protein_coding	protein_coding	2	123	2	3.55862	4.9123	6.26598	0.00318361	0.00169503	0.0360488	0.0204875
chr16	27538955	27539054	6572626	0	-	0.333333	(0.33,0.36]	chr16	656127	2	INTRON	INTRON	GTF3C1	ENSG00000077235.18	ENST00000356183.9:ENST00000561623.5	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.8729	4.912265	4.95163	0.0583482	0.0164782	0.155373	0.091341
chr19	4392383	4392482	7313306	0	-	0.59596	(0.58,1]	chr19	754735	19	INTRON	INTRON	SH3GL1	ENSG00000141985.9	ENST00000269886.7:ENST00000598564.5:ENST00000417295.6:ENST00000598219.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.81862	4.912235	5.00585	0.0323732	0.0102696	0.121593	0.0678072
chr1	11023327	11023426	27795	0	+	0.464646	(0.45,0.485]	chr1	3255	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000639083.1:ENST00000639599.1:ENST00000240185.8:ENST00000614757.4:ENST00000473869.5:ENST00000315091.7:ENST00000616545.4:ENST00000621790.4:ENST00000617172.4:ENST00000611963.4:ENST00000619555.4:ENST00000620632.4:ENST00000610369.4:ENST00000614494.1:ENST00000611136.4:ENST00000477447.6:ENST00000612542.1:ENST00000620505.1:ENST00000621573.1:ENST00000611008.4:ENST00000613177.1:ENST00000622108.1:ENST00000496840.1:ENST00000617757.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	164	2	3.17236	4.91222	6.65208	0.00394416	0.00371059	0.039096	0.0367799
chr11	46097822	46097922	5030599	0	-	0.33	(0.29,0.33]	chr11	486583	52	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000689695.1:ENST00000685188.1:ENST00000532883.5:ENST00000524497.5:ENST00000693122.1:ENST00000529734.5:ENST00000529782.5:ENST00000688222.1:ENST00000690039.1:ENST00000533757.5:ENST00000525438.5:ENST00000692265.1:ENST00000527782.5:ENST00000532010.5:ENST00000528893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.59993	4.912205	5.22448	0.0331252	0.0243639	0.123313	0.113231
chr11	96233997	96234097	5112476	0	-	0.32	(0.29,0.33]	chr11	496566	1401	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.59993	4.912205	5.22448	0.0331252	0.0243639	0.123313	0.113231
chr2	158590441	158590540	936298	0	+	0.333333	(0.33,0.36]	chr2	103407	16	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000421462.5:ENST00000462335.1:ENST00000481115.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	125	2	3.56746	4.912145	6.25683	0.0214172	6.42061e-4	0.100331	0.0104165
chr17	243727	243827	6820707	0	-	0.41	(0.39,0.419]	chr17	689558	93	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000570893.5:ENST00000576001.5:ENST00000570954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.55943	4.91197	5.26451	0.104562	0.00800901	0.19835	0.0580954
chr3	78848251	78848351	1835986	0	-	0.32	(0.29,0.33]	chr3	188602	1010	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	1	100	2	3.84904	4.91154	5.97404	0.0096909	0.00359491	0.0661757	0.0342681
chr1	149487697	149487790	238369	0	+	0.494624	(0.485,0.523]	chr1	26478	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF19	ENSG00000271383.8	ENST00000651566.2:ENST00000611931.4:ENST00000612881.4:ENST00000369227.7	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.60518	4.911435	5.21769	0.0359739	0.0233371	0.127853	0.110098
chr2	239252999	239253098	1391238	0	-	0.50505	(0.485,0.523]	chr2	148740	14	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	47	2	4.60518	4.911435	5.21769	0.0359739	0.0233371	0.127853	0.110098
chr22	39420628	39420728	7725736	0	+	0.52	(0.485,0.523]	chr22	809455	6	INTRON	INTRON	TAB1	ENSG00000100324.14	ENST00000216160.11:ENST00000331454.3	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.60518	4.911435	5.21769	0.0359739	0.0233371	0.127853	0.110098
chr7	155713239	155713338	3519218	0	+	0.494949	(0.485,0.523]	chr7	339826	14	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3:ENST00000486747.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.60518	4.911435	5.21769	0.0359739	0.0233371	0.127853	0.110098
chr9	128755107	128755207	4415544	0	-	0.49	(0.485,0.523]	chr9	421319	3	SS5_PROX	SS5_PROX:INTRON	ZER1	ENSG00000160445.11	ENST00000291900.7:ENST00000494461.1:ENST00000414921.5:ENST00000427848.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.60518	4.911435	5.21769	0.0359739	0.0233371	0.127853	0.110098
chr3	11627215	11627315	1684616	0	-	0.49	(0.485,0.523]	chr3	176100	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	VGLL4	ENSG00000144560.16	ENST00000430365.7:ENST00000273038.7:ENST00000426568.5:ENST00000445411.5:ENST00000418000.5:ENST00000458499.5:ENST00000417206.6:ENST00000417466.5:ENST00000419541.4:ENST00000623028.1:ENST00000480288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	125	2	3.81856	4.910985	6.00341	0.012775	9.07333e-4	0.0769397	0.0132726
chr5	74820490	74820589	2692261	0	-	0.40404	(0.39,0.419]	chr5	265977	61	INTRON	INTRON	FAM169A	ENSG00000198780.13	ENST00000389156.9:ENST00000510496.5:ENST00000687041.1:ENST00000514215.5:ENST00000510609.5:ENST00000513277.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.72276	4.9109099999999994	5.09906	0.0535378	0.0238104	0.150319	0.111436
chr8	38142448	38142547	3800899	0	+	0.393939	(0.39,0.419]	chr8	365655	25	INTRON	INTRON	ASH2L	ENSG00000129691.16	ENST00000521808.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	47	2	4.72276	4.9109099999999994	5.09906	0.0535378	0.0238104	0.150319	0.111436
chr6	155255640	155255739	3297577	0	-	0.383838	(0.36,0.39]	chr6	319132	15	EXON_LNCRNA	EXON_LNCRNA	ENSG00000235381	ENSG00000235381.1	ENST00000435295.1	lncRNA	lncRNA	lncRNA	lncRNA	1	105	2	3.9606	4.91049	5.86038	0.0174081	0.00326569	0.0901374	0.0321244
chr2	121478423	121478523	1262510	0	-	0.51	(0.485,0.523]	chr2	136083	81	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	132	2	4.05168	4.9104849999999995	5.76929	0.00839391	0.00167976	0.0616149	0.0203806
chr21	44867134	44867233	7678513	0	-	0.494949	(0.485,0.523]	chr21	802773	11	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	1072	2	4.75381	4.910069999999999	5.06633	1.89248e-4	3.32313e-5	0.00776158	0.00121702
chr16	85394134	85394234	6517012	0	+	0.67	(0.58,1]	chr16	646391	348	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	98	2	3.44157	4.909895	6.37822	0.00760198	0.00252415	0.0561937	0.031696
chr10	96058017	96058117	4739458	0	-	0.51	(0.485,0.523]	chr10	452328	147	INTRON	INTRON	ENTPD1-AS1	ENSG00000226688.8	ENST00000669711.1:ENST00000416301.5:ENST00000451364.5:ENST00000671323.1:ENST00000656604.1:ENST00000452728.5:ENST00000684888.1:ENST00000454638.5:ENST00000668038.1:ENST00000686747.1:ENST00000693608.1:ENST00000458228.5:ENST00000691417.1:ENST00000427846.1	lncRNA	lncRNA	lncRNA	lncRNA	0	54	2	4.12717	4.909585	5.692	0.0545434	0.0171772	0.167824	0.0895975
chr16	85379240	85379340	6516863	0	+	0.52	(0.485,0.523]	chr16	646391	199	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	54	2	4.12717	4.909585	5.692	0.0545434	0.0171772	0.167824	0.0895975
chr22	40527099	40527199	7814558	0	-	0.36	(0.33,0.36]	chr22	819485	71	INTRON	INTRON	MRTFA	ENSG00000196588.21	ENST00000651595.2:ENST00000396617.7:ENST00000355630.10:ENST00000652095.2:ENST00000402042.7:ENST00000651694.1:ENST00000422851.1:ENST00000463769.7:ENST00000650658.1:ENST00000466278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	47	2	4.65869	4.909	5.15931	0.043896	0.0248983	0.139792	0.114418
chr9	129499159	129499257	4250768	0	+	0.591837	(0.58,1]	chr9	404726	3	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	92	2	3.89258	4.90893	5.92528	0.0062948	0.00229214	0.0523832	0.0253494
chr6	519580	519680	3077336	0	-	0.66	(0.58,1]	chr6	299297	195	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	2	123	2	3.64784	4.908645	6.16945	0.00387582	0.00130204	0.0401256	0.0171306
chr10	75728547	75728647	4523449	0	+	0.41	(0.39,0.419]	chr10	432271	806	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	903	2	4.88607	4.90854	4.93101	0.00101709	1.22904e-5	0.0191524	5.94335e-4
chr6	2209856	2209955	3084982	0	-	0.515152	(0.485,0.523]	chr6	299526	340	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5	protein_coding	protein_coding	protein_coding	protein_coding	4	184	2	3.12187	4.908375	6.69488	0.00290842	0.00290687	0.0342042	0.0298557
chr15	84212399	84212499	6342804	0	-	0.37	(0.36,0.39]	chr15	625266	67	INTRON	INTRON	GOLGA2P7	ENSG00000225151.10	ENST00000400817.7:ENST00000559668.5:ENST00000316967.10:ENST00000559654.5:ENST00000557980.5:ENST00000557881.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	49	2	4.48559	4.908325	5.33106	0.0383628	0.036329	0.139793	0.131324
chr16	22423613	22423713	6566800	0	-	0.42	(0.419,0.45]	chr16	655121	10	INTRON	INTRON	CDR2:RRN3P3	ENSG00000140743.8:ENSG00000257122.5	ENST00000564542.5:ENST00000563573.5:ENST00000569045.1:ENST00000551766.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	3	184	2	3.67203	4.90812	6.14421	0.0127879	0.00131743	0.0769397	0.0172628
chr14	104872955	104873055	5925941	0	+	0.6	(0.58,1]	chr14	579942	40	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	1	100	2	4.55404	4.90771	5.26138	0.021217	3.19972e-4	0.0996078	0.00635576
chr16	84735577	84735675	6514185	0	+	0.387755	(0.36,0.39]	chr16	646283	17	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.82572	4.90757	4.98942	0.0751666	0.0141427	0.172839	0.0833845
chr5	131532961	131533033	2756292	0	-	0.388889	(0.36,0.39]	chr5	270122	1	UTR5	UTR5:EXON_MRNA:INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000514179.5:ENST00000513227.5:ENST00000504575.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.82572	4.90757	4.98942	0.0751666	0.0141427	0.172839	0.0833845
chr20	32477023	32477122	7543638	0	-	0.575758	(0.523,0.58]	chr20	787372	19	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	4.34118	4.9075	5.47382	0.0372357	0.0244797	0.139793	0.106683
chr17	59632024	59632124	6767245	0	+	0.46	(0.45,0.485]	chr17	682607	115	INTRON	INTRON	CLTC	ENSG00000141367.12	ENST00000621829.4:ENST00000393043.5:ENST00000269122.8:ENST00000580081.1:ENST00000579456.5:ENST00000584313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	123	2	3.33209	4.907195	6.4823	0.0308842	2.88849e-4	0.119556	0.00590733
chr16	75236761	75236827	6644476	0	-	0.666667	(0.58,1]	chr16	664412	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000566982.1:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10:ENST00000569340.1:ENST00000564170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	229	2	4.6529	4.907095	5.16129	0.00155479	4.39806e-5	0.0243306	0.00149886
chr2	46301932	46302032	784687	0	+	0.43	(0.419,0.45]	chr2	89746	36	INTRON	INTRON	EPAS1	ENSG00000116016.14	ENST00000460015.1:ENST00000449347.5:ENST00000263734.5:ENST00000467888.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	52	2	4.29342	4.907075000000001	5.52073	0.0526662	0.0327198	0.167062	0.122543
chr14	23094130	23094216	5939174	0	-	0.5	(0.485,0.523]	chr14	582244	2	INTRON	INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000262710.5:ENST00000457657.5:ENST00000555053.5	protein_coding	protein_coding	protein_coding	protein_coding	2	138	2	3.08589	4.907005	6.72812	0.00799823	0.00272951	0.0580954	0.0331786
chr19	945212	945311	7185298	0	+	0.585859	(0.58,1]	chr19	730741	121	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	93	2	3.72143	4.906995	6.09256	0.00452436	0.00366718	0.0436138	0.0346803
chr3	134246324	134246424	1920290	0	-	0.32	(0.29,0.33]	chr3	195308	234	INTRON	INTRON	RYK	ENSG00000163785.13	ENST00000623711.4:ENST00000460933.5:ENST00000620660.4	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.33251	4.90679	5.48107	0.0396433	0.0222022	0.143388	0.101857
chr10	132553059	132553158	4616991	0	+	0.535354	(0.523,0.58]	chr10	441139	145	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.78384	4.906555	5.02927	0.0663135	0.0095202	0.162385	0.0650078
chr10	132555257	132555357	4617013	0	+	0.57	(0.523,0.58]	chr10	441139	167	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.78384	4.906555	5.02927	0.0663135	0.0095202	0.162385	0.0650078
chr16	30990740	30990839	6579788	0	-	0.565657	(0.523,0.58]	chr16	657721	16	UTR3	UTR3:EXON_MRNA	STX1B	ENSG00000099365.11	ENST00000215095.11	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.78384	4.906555	5.02927	0.0663135	0.0095202	0.162385	0.0650078
chr16	78774514	78774614	6502163	0	+	0.56	(0.523,0.58]	chr16	645713	171	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6:ENST00000408984.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.78384	4.906555	5.02927	0.0663135	0.0095202	0.162385	0.0650078
chr4	56436926	56437025	2046036	0	+	0.545455	(0.523,0.58]	chr4	209256	2	INTRON	INTRON	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000505164.5:ENST00000504188.1:ENST00000399688.7:ENST00000510584.1:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.78384	4.906555	5.02927	0.0663135	0.0095202	0.162385	0.0650078
chr6	158340466	158340566	3061926	0	+	0.54	(0.523,0.58]	chr6	297592	258	INTRON	INTRON	ENSG00000274023:TULP4	ENSG00000274023.1:ENSG00000130338.13	ENST00000619713.1:ENST00000367097.8:ENST00000367094.6:ENST00000616856.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	0	45	2	4.78384	4.906555	5.02927	0.0663135	0.0095202	0.162385	0.0650078
chr7	47378014	47378114	3587572	0	-	0.53	(0.523,0.58]	chr7	346036	80	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.78384	4.906555	5.02927	0.0663135	0.0095202	0.162385	0.0650078
chr10	103699212	103699312	4757092	0	-	0.38	(0.36,0.39]	chr10	454791	57	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.7639	4.906415	5.04893	0.0811309	0.0125348	0.177951	0.0765738
chr11	70593529	70593629	5060208	0	-	0.57	(0.523,0.58]	chr11	492663	902	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.84569	4.906415	4.96714	0.0610722	0.0108948	0.158506	0.0706366
chr11	72775443	72775543	5070696	0	-	0.55	(0.523,0.58]	chr11	493498	157	INTRON	INTRON	ARAP1:STARD10	ENSG00000186635.15:ENSG00000214530.10	ENST00000359373.9:ENST00000334805.11:ENST00000543304.5:ENST00000538536.5:ENST00000538437.5:ENST00000545082.5:ENST00000537947.5:ENST00000542989.5:ENST00000546314.5:ENST00000535267.1:ENST00000539138.1:ENST00000535054.1:ENST00000536290.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	45	2	4.84569	4.906415	4.96714	0.0610722	0.0108948	0.158506	0.0706366
chr12	116788699	116788799	5335346	0	+	0.34	(0.33,0.36]	chr12	520777	66	INTRON	INTRON	RNFT2	ENSG00000135119.15	ENST00000407967.7:ENST00000392549.7:ENST00000257575.9:ENST00000547718.5:ENST00000677328.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.64131	4.906415	5.17152	0.0867669	0.00887848	0.182221	0.0618231
chr12	132545809	132545909	5353074	0	+	0.57	(0.523,0.58]	chr12	523670	175	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.84569	4.906415	4.96714	0.0610722	0.0108948	0.158506	0.0706366
chr2	3288614	3288714	1080993	0	-	0.57	(0.523,0.58]	chr2	117633	59	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.84569	4.906415	4.96714	0.0610722	0.0108948	0.158506	0.0706366
chr4	146500554	146500653	2336431	0	-	0.353535	(0.33,0.36]	chr4	234371	219	INTRON	INTRON	SLC10A7	ENSG00000120519.16	ENST00000432059.6:ENST00000335472.12:ENST00000693222.1:ENST00000507030.5:ENST00000511315.2:ENST00000507560.5:ENST00000685433.1:ENST00000394059.8:ENST00000511374.5:ENST00000513583.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	46	2	4.64131	4.906415	5.17152	0.0867669	0.00887848	0.182221	0.0618231
chrX	133549581	133549681	8111650	0	-	0.53	(0.523,0.58]	chrX	845474	129	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000692074.1:ENST00000667662.1:ENST00000666017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.84569	4.906415	4.96714	0.0610722	0.0108948	0.158506	0.0706366
chr1	31580507	31580604	81052	0	+	0.659794	(0.58,1]	chr1	9290	3	INTRON	INTRON	LINC01226:TINAGL1	ENSG00000284543.1:ENSG00000142910.16	ENST00000639839.1:ENST00000640226.1:ENST00000457433.6:ENST00000271064.12:ENST00000461030.5:ENST00000478398.5:ENST00000481165.5:ENST00000537531.2:ENST00000468635.5:ENST00000498429.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	49	2	4.29454	4.906335	5.51813	0.0305531	0.013519	0.126768	0.0792526
chr22	46289999	46290099	7743250	0	+	0.61	(0.58,1]	chr22	811891	1	SS5_PROX	SS5_PROX:INTRON	TTC38	ENSG00000075234.17	ENST00000381031.8:ENST00000451998.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	49	2	4.29454	4.906335	5.51813	0.0305531	0.013519	0.126768	0.0792526
chr22	46650015	46650115	7744678	0	+	0.7	(0.58,1]	chr22	812052	117	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.29454	4.906335	5.51813	0.0305531	0.013519	0.126768	0.0792526
chr9	134332548	134332648	4260748	0	+	0.64	(0.58,1]	chr9	406311	55	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	4.29454	4.906335	5.51813	0.0305531	0.013519	0.126768	0.0792526
chr13	99558668	99558765	5639872	0	+	0.360825	(0.36,0.39]	chr13	553893	27	INTRON	INTRON	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.885	4.906174999999999	4.92735	0.0697729	0.0160072	0.167185	0.0894586
chr2	201193898	201193995	991176	0	+	0.381443	(0.36,0.39]	chr2	108956	9	EXON_MRNA	EXON_MRNA:INTRON	CASP10	ENSG00000003400.16	ENST00000374650.8:ENST00000492363.6:ENST00000696191.1:ENST00000460140.5:ENST00000313728.12:ENST00000272879.9:ENST00000346817.10:ENST00000696199.1:ENST00000286186.11:ENST00000438843.6:ENST00000471191.2:ENST00000448480.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.885	4.906174999999999	4.92735	0.0697729	0.0160072	0.167185	0.0894586
chr6	8047090	8047190	3091805	0	-	0.38	(0.36,0.39]	chr6	300216	53	INTRON	INTRON	BLOC1S5	ENSG00000188428.20	ENST00000397457.7:ENST00000244777.6:ENST00000627748.2:ENST00000543936.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.885	4.906174999999999	4.92735	0.0697729	0.0160072	0.167185	0.0894586
chr1	171514135	171514235	274378	0	+	0.31	(0.29,0.33]	chr1	32006	2	SS3_PROX	SS3_PROX:INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1:ENST00000463586.1:ENST00000426496.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	45	2	4.85285	4.9055800000000005	4.95831	0.0567079	0.0118616	0.154343	0.0746945
chr18	69565393	69565493	7084828	0	+	0.31	(0.29,0.33]	chr18	722121	4	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.85285	4.9055800000000005	4.95831	0.0567079	0.0118616	0.154343	0.0746945
chr7	5748571	5748670	3538862	0	-	0.313131	(0.29,0.33]	chr7	341713	64	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000411812.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.85285	4.9055800000000005	4.95831	0.0567079	0.0118616	0.154343	0.0746945
chr12	101914232	101914332	5308397	0	+	0.47	(0.45,0.485]	chr12	517164	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DRAM1	ENSG00000136048.14	ENST00000258534.13:ENST00000544152.5:ENST00000551403.1:ENST00000549066.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	123	2	3.51602	4.905555	6.29509	0.0229356	4.85904e-4	0.102982	0.00857996
chr12	108856927	108857027	5494272	0	-	0.55	(0.523,0.58]	chr12	540514	1	SS5_PROX	SS5_PROX:INTRON	SSH1	ENSG00000084112.15	ENST00000326495.10:ENST00000551165.5:ENST00000548522.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.50593	4.90554	5.30515	0.094303	0.00509102	0.188571	0.0433513
chr3	51667677	51667776	1472217	0	+	0.535354	(0.523,0.58]	chr3	157989	44	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.50593	4.90554	5.30515	0.094303	0.00509102	0.188571	0.0433513
chr11	70812967	70813067	5062413	0	-	0.48	(0.45,0.485]	chr11	492713	54	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	137	2	3.2476	4.90548	6.56336	0.0056886	0.00436001	0.046716	0.0427656
chr2	32609206	32609303	750380	0	+	0.391753	(0.39,0.419]	chr2	87576	12	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000471232.5:ENST00000465130.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.76257	4.9054649999999995	5.04836	0.0822354	0.0126072	0.179396	0.0768036
chr12	23940875	23940975	5388434	0	-	0.34	(0.33,0.36]	chr12	528193	199	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000537393.5:ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2:ENST00000538083.1:ENST00000536729.2:ENST00000446891.7:ENST00000536850.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	140	2	2.68323	4.905285	7.12734	0.0814187	5.56237e-5	0.178482	0.00177398
chr6	24224088	24224188	3108983	0	-	0.47	(0.45,0.485]	chr6	301412	186	INTRON	INTRON	DCDC2	ENSG00000146038.12	ENST00000378454.8	protein_coding	protein_coding	protein_coding	protein_coding	1	113	2	3.1756	4.9051849999999995	6.63477	0.0180699	0.00382972	0.0953579	0.0399078
chr1	171512497	171512597	274361	0	+	0.35	(0.33,0.36]	chr1	32001	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1:ENST00000463586.1:ENST00000426496.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	126	2	3.68637	4.905060000000001	6.12375	0.0175682	9.1162e-4	0.0906595	0.0133249
chr11	115308753	115308853	5129173	0	-	0.51	(0.485,0.523]	chr11	498106	214	INTRON	INTRON	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000541434.5:ENST00000543249.1:ENST00000540951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.78426	4.9049949999999995	5.02573	0.0660335	0.00985879	0.162385	0.0664239
chr16	4818693	4818793	6544562	0	-	0.5	(0.485,0.523]	chr16	651150	6	INTRON	INTRON	GLYR1	ENSG00000140632.17	ENST00000321919.14:ENST00000436648.9:ENST00000588732.5:ENST00000589389.5:ENST00000591451.5:ENST00000588297.5:ENST00000586095.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	4.78426	4.9049949999999995	5.02573	0.0660335	0.00985879	0.162385	0.0664239
chr22	28916689	28916789	7705608	0	+	0.5	(0.485,0.523]	chr22	806317	323	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.78426	4.9049949999999995	5.02573	0.0660335	0.00985879	0.162385	0.0664239
chr8	38806543	38806643	3802628	0	+	0.51	(0.485,0.523]	chr8	365853	5	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5:ENST00000522544.5:ENST00000524354.5:ENST00000523239.5:ENST00000317827.9:ENST00000276520.12:ENST00000520973.5:ENST00000521528.6:ENST00000521935.5:ENST00000523834.1:ENST00000521154.1:ENST00000524193.1:ENST00000522955.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	45	2	4.78426	4.9049949999999995	5.02573	0.0660335	0.00985879	0.162385	0.0664239
chr11	70737787	70737887	5061659	0	-	0.48	(0.45,0.485]	chr11	492701	199	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.5725	4.904925	5.23735	0.0926859	0.00687715	0.188571	0.0526888
chr16	2166336	2166436	6372966	0	+	0.46	(0.45,0.485]	chr16	629429	4	SS5_PROX	SS5_PROX:INTRON	TRAF7	ENSG00000131653.13	ENST00000565383.5:ENST00000569686.5:ENST00000326181.11:ENST00000567653.5:ENST00000564067.5:ENST00000567645.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.5725	4.904925	5.23735	0.0926859	0.00687715	0.188571	0.0526888
chr16	81544881	81544981	6508742	0	+	0.45	(0.419,0.45]	chr16	645911	490	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	297	2	4.79239	4.90488	5.01737	0.0031404	2.13475e-4	0.0358106	0.00475054
chr5	39424473	39424550	2645426	0	-	0.467532	(0.45,0.485]	chr5	262772	2	SS5_PROX	SS5_PROX:INTRON	DAB2	ENSG00000153071.15	ENST00000545653.5:ENST00000320816.11:ENST00000339788.10:ENST00000507539.5:ENST00000511792.5:ENST00000503513.5:ENST00000515700.5:ENST00000515269.5:ENST00000511536.5:ENST00000509457.1:ENST00000502388.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	105	2	3.46316	4.9048549999999995	6.34655	0.00952494	0.00642055	0.0650078	0.0529785
chrX	153643603	153643701	7960798	0	+	0.72449	(0.58,1]	chrX	833164	6	INTRON	INTRON	DUSP9	ENSG00000130829.18	ENST00000477033.1:ENST00000370167.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	111	2	3.03676	4.904669999999999	6.77258	0.0198789	0.00108768	0.100864	0.0198535
chr15	41481282	41481381	6084601	0	+	0.323232	(0.29,0.33]	chr15	598327	7	UTR3	UTR3:EXON_MRNA	RTF1	ENSG00000137815.15	ENST00000389629.9	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.51301	4.904635000000001	5.29626	0.0885563	0.005619	0.183874	0.0462026
chr4	84908996	84909096	2274268	0	-	0.39	(0.36,0.39]	chr4	229367	116	INTRON	INTRON	WDFY3	ENSG00000163625.16	ENST00000295888.9:ENST00000509172.1:ENST00000502713.1	protein_coding	protein_coding	protein_coding	protein_coding	1	105	2	3.65573	4.9045749999999995	6.15342	0.0108737	0.0067964	0.0707085	0.0524192
chr10	75701062	75701162	4523174	0	+	0.58	(0.523,0.58]	chr10	432271	531	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	120	2	3.40026	4.904455	6.40865	0.0262178	2.80789e-4	0.110264	0.00578259
chr16	16003920	16004019	6406543	0	+	0.535354	(0.523,0.58]	chr16	633005	538	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.68785	4.904175	5.1205	0.0416463	0.0194172	0.136301	0.0994526
chr19	47075612	47075712	7391885	0	-	0.58	(0.523,0.58]	chr19	768018	25	INTRON	INTRON	ZC3H4	ENSG00000130749.10	ENST00000253048.10:ENST00000601973.1:ENST00000594019.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.68785	4.904175	5.1205	0.0416463	0.0194172	0.136301	0.0994526
chr22	46907790	46907889	7746469	0	+	0.565657	(0.523,0.58]	chr22	812218	126	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.68785	4.904175	5.1205	0.0416463	0.0194172	0.136301	0.0994526
chr6	30737003	30737101	3117930	0	-	0.55102	(0.523,0.58]	chr6	302750	7	INTRON	INTRON	FLOT1	ENSG00000137312.15	ENST00000376389.8:ENST00000487376.5:ENST00000413165.5:ENST00000476729.5:ENST00000438162.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.68785	4.904175	5.1205	0.0416463	0.0194172	0.136301	0.0994526
chr2	121473645	121473745	1262462	0	-	0.46	(0.45,0.485]	chr2	136083	33	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	48	2	4.50852	4.9041250000000005	5.29973	0.035042	0.0302873	0.12704	0.126768
chr17	77305844	77305943	6803409	0	+	0.575758	(0.523,0.58]	chr17	686716	106	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.71922	4.90402	5.08882	0.0721601	0.00834774	0.168159	0.0598672
chr20	36312905	36313005	7469116	0	+	0.54	(0.523,0.58]	chr20	777805	60	INTRON	INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.71922	4.90402	5.08882	0.0721601	0.00834774	0.168159	0.0598672
chr1	155561752	155561852	597734	0	-	0.47	(0.45,0.485]	chr1	70101	2	SS5_PROX	SS5_PROX:INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.74641	4.903895	5.06138	0.0492008	0.0193126	0.146142	0.0994526
chr10	119393799	119393899	4595187	0	+	0.46	(0.45,0.485]	chr10	439179	125	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.74641	4.903895	5.06138	0.0492008	0.0193126	0.146142	0.0994526
chr14	34621590	34621690	5956052	0	-	0.48	(0.45,0.485]	chr14	583740	115	INTRON	INTRON	SNX6	ENSG00000129515.20	ENST00000362031.10:ENST00000396526.7:ENST00000652385.1:ENST00000556162.6:ENST00000555416.6:ENST00000557265.6:ENST00000556712.6:ENST00000557341.6:ENST00000556303.1:ENST00000555648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.74641	4.903895	5.06138	0.0492008	0.0193126	0.146142	0.0994526
chr4	3361402	3361501	2005050	0	+	0.545455	(0.523,0.58]	chr4	204663	180	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	120	2	3.37594	4.9038900000000005	6.43184	0.0272868	2.62665e-4	0.112327	0.00552802
chr12	23790392	23790492	5386925	0	-	0.35	(0.33,0.36]	chr12	528175	274	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000537393.5:ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	119	2	4.64843	4.9038699999999995	5.15931	0.043896	4.90394e-4	0.139792	0.00862316
chr2	240623793	240623892	1075181	0	+	0.606061	(0.58,1]	chr2	116654	44	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	2	128	2	3.10233	4.90382	6.70531	0.00607723	0.00125905	0.0487928	0.0215793
chr10	80503431	80503531	4535614	0	+	0.55	(0.523,0.58]	chr10	432713	138	INTRON	INTRON	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000481124.5:ENST00000372158.6:ENST00000372157.6:ENST00000469149.1:ENST00000372164.7:ENST00000341863.10:ENST00000372156.5:ENST00000616406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.90222	4.9036100000000005	4.905	0.0563605	0.0125132	0.154188	0.0765738
chr10	132553158	132553258	4616992	0	+	0.53	(0.523,0.58]	chr10	441139	146	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.90222	4.9036100000000005	4.905	0.0563605	0.0125132	0.154188	0.0765738
chr11	70574729	70574829	5060020	0	-	0.56	(0.523,0.58]	chr11	492663	714	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.90222	4.9036100000000005	4.905	0.0563605	0.0125132	0.154188	0.0765738
chr4	678157	678188	1993632	0	+	0.548387	(0.523,0.58]	chr4	203051	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MYL5	ENSG00000215375.7	ENST00000506838.5:ENST00000505477.5:ENST00000503300.5:ENST00000400159.7:ENST00000511290.5:ENST00000513662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.90222	4.9036100000000005	4.905	0.0563605	0.0125132	0.154188	0.0765738
chr9	93622869	93622969	4184118	0	+	0.58	(0.523,0.58]	chr9	397705	456	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.90222	4.9036100000000005	4.905	0.0563605	0.0125132	0.154188	0.0765738
chr7	651636	651736	3524607	0	-	0.59	(0.58,1]	chr7	340404	438	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000430040.5:ENST00000414568.5:ENST00000417852.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.54927	4.90329	5.25731	0.0643046	0.00358178	0.161669	0.0342681
chr8	143488146	143488246	4096474	0	-	0.6	(0.58,1]	chr8	389272	28	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6:ENST00000528401.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.54927	4.90329	5.25731	0.0643046	0.00358178	0.161669	0.0342681
chr1	147243789	147243888	232452	0	+	0.323232	(0.29,0.33]	chr1	25788	2	INTRON	INTRON	CHD1L	ENSG00000131778.20	ENST00000652587.1:ENST00000652616.1:ENST00000652494.1:ENST00000651207.1:ENST00000650721.1:ENST00000651226.1:ENST00000652161.1:ENST00000651510.1:ENST00000361293.10:ENST00000652278.1:ENST00000369259.4:ENST00000467213.5:ENST00000369258.8:ENST00000622533.4:ENST00000651410.1:ENST00000652486.1:ENST00000652346.1:ENST00000651407.1:ENST00000650828.1:ENST00000651070.1:ENST00000650714.1:ENST00000651420.1:ENST00000652357.1:ENST00000488864.5:ENST00000652188.1:ENST00000651820.1:ENST00000651231.1:ENST00000492728.1:ENST00000651206.1:ENST00000431239.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	4.72635	4.90316	5.07997	0.0672935	0.00913217	0.163263	0.0632458
chr12	1275058	1275158	5153138	0	+	0.31	(0.29,0.33]	chr12	500882	115	INTRON	INTRON	ERC1	ENSG00000082805.21	ENST00000543086.7:ENST00000360905.9:ENST00000690948.1:ENST00000542302.6:ENST00000546231.6:ENST00000347735.10:ENST00000397203.7:ENST00000440394.7:ENST00000545948.5:ENST00000589028.6:ENST00000355446.9:ENST00000538971.6:ENST00000588412.5:ENST00000543263.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.72635	4.90316	5.07997	0.0672935	0.00913217	0.163263	0.0632458
chr4	77898348	77898448	2065312	0	+	0.31	(0.29,0.33]	chr4	211097	37	INTRON	INTRON	MRPL1	ENSG00000169288.18	ENST00000315567.13:ENST00000502384.3:ENST00000506674.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.72635	4.90316	5.07997	0.0672935	0.00913217	0.163263	0.0632458
chr12	23758902	23759001	5386608	0	-	0.353535	(0.33,0.36]	chr12	528170	28	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000537393.5:ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	103	2	3.99628	4.903085	5.80989	0.0164265	0.0027942	0.0877406	0.0289034
chr5	97036614	97036714	2489746	0	+	0.36	(0.33,0.36]	chr5	248102	82	UTR3	UTR3:EXON_MRNA	LNPEP	ENSG00000113441.16	ENST00000231368.10	protein_coding	protein_coding	protein_coding	protein_coding	1	103	2	3.99628	4.903085	5.80989	0.0164265	0.0027942	0.0877406	0.0289034
chr13	40628746	40628846	5692953	0	-	0.51	(0.485,0.523]	chr13	558751	656	INTRON	INTRON	FOXO1	ENSG00000150907.10	ENST00000379561.6:ENST00000655267.1:ENST00000660760.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	106	2	3.34812	4.903025	6.45793	0.0117752	0.00452302	0.0743709	0.0436138
chr1	48228449	48228549	120984	0	+	0.64	(0.58,1]	chr1	15166	2	SS3_PROX	SS3_PROX:INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	109	2	3.5406	4.90302	6.26544	0.0154024	2.06156e-4	0.0849828	0.00461335
chr2	101796041	101796140	861617	0	+	0.434343	(0.419,0.45]	chr2	97534	49	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.7145	4.902915	5.09133	0.0586308	0.0256236	0.155565	0.115966
chr12	132538741	132538841	5353003	0	+	0.33	(0.29,0.33]	chr12	523670	104	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.89341	4.9027899999999995	4.91217	0.0522244	0.0135896	0.148503	0.0811697
chr4	53271325	53271425	2237226	0	-	0.32	(0.29,0.33]	chr4	225494	1254	INTRON	INTRON	SCFD2	ENSG00000184178.17	ENST00000401642.8:ENST00000388940.8	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.89341	4.9027899999999995	4.91217	0.0522244	0.0135896	0.148503	0.0811697
chr12	110639583	110639683	5328142	0	+	0.39	(0.36,0.39]	chr12	519584	27	INTRON	INTRON	TCTN1	ENSG00000204852.17	ENST00000551590.5:ENST00000490514.5:ENST00000397656.8:ENST00000495659.6:ENST00000397655.7:ENST00000549123.6:ENST00000552038.6:ENST00000377654.5:ENST00000681851.1:ENST00000547461.3:ENST00000614115.5:ENST00000471804.7:ENST00000680068.1:ENST00000681807.1:ENST00000681604.1:ENST00000680512.1:ENST00000397659.9:ENST00000679713.1:ENST00000679473.1:ENST00000679617.1:ENST00000681395.1:ENST00000464809.5:ENST00000480648.5:ENST00000680445.1:ENST00000680168.1:ENST00000482281.6:ENST00000463313.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.69932	4.9027	5.10608	0.0877431	0.0111429	0.183437	0.071709
chr2	191303307	191303407	976976	0	+	0.39	(0.36,0.39]	chr2	107540	67	INTRON	INTRON	MYO1B	ENSG00000128641.19	ENST00000418908.5:ENST00000339514.8:ENST00000392318.8:ENST00000304164.8:ENST00000438652.5:ENST00000451437.5:ENST00000471904.1:ENST00000392316.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.69932	4.9027	5.10608	0.0877431	0.0111429	0.183437	0.071709
chr4	56437320	56437419	2046040	0	+	0.373737	(0.36,0.39]	chr4	209256	6	INTRON	INTRON	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000505164.5:ENST00000504188.1:ENST00000399688.7:ENST00000510584.1:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.69932	4.9027	5.10608	0.0877431	0.0111429	0.183437	0.071709
chr4	105443896	105443995	2298198	0	-	0.383838	(0.36,0.39]	chr4	231299	55	INTRON	INTRON	PPA2	ENSG00000138777.20	ENST00000341695.10:ENST00000348706.9:ENST00000509031.5:ENST00000351450.10:ENST00000354147.7:ENST00000432483.6:ENST00000515567.5:ENST00000503171.5:ENST00000510015.5:ENST00000509426.5:ENST00000508518.5:ENST00000514209.5:ENST00000506815.5:ENST00000457404.6:ENST00000502833.5:ENST00000504028.5:ENST00000502596.5:ENST00000513649.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	46	2	4.69932	4.9027	5.10608	0.0877431	0.0111429	0.183437	0.071709
chr16	48635792	48635892	6446688	0	+	0.51	(0.485,0.523]	chr16	639380	118	INTRON	INTRON	ENSG00000260086	ENSG00000260086.4	ENST00000568150.4:ENST00000686696.1:ENST00000564212.1:ENST00000565072.1	lncRNA	lncRNA	lncRNA	lncRNA	0	46	2	4.68434	4.90263	5.12092	0.0414411	0.0200045	0.136301	0.100864
chr19	16837400	16837500	7217740	0	+	0.51	(0.485,0.523]	chr19	737614	54	INTRON	INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000596802.5	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.68434	4.90263	5.12092	0.0414411	0.0200045	0.136301	0.100864
chr7	128087551	128087646	3472617	0	+	0.515789	(0.485,0.523]	chr7	335477	1	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000489417.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.68434	4.90263	5.12092	0.0414411	0.0200045	0.136301	0.100864
chr2	235515231	235515331	1062748	0	+	0.6	(0.58,1]	chr2	115651	200	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	101	2	3.30273	4.902515	6.5023	0.0107069	0.00194503	0.0700635	0.0275844
chr2	25427134	25427234	1106505	0	-	0.51	(0.485,0.523]	chr2	120833	2	SS5_PROX	SS5_PROX:INTRON	DTNB	ENSG00000138101.20	ENST00000495466.6:ENST00000496972.6:ENST00000404103.7:ENST00000405222.5:ENST00000407038.7:ENST00000407661.7:ENST00000406818.8:ENST00000398951.6:ENST00000288642.12:ENST00000407186.5:ENST00000356599.9:ENST00000489949.5:ENST00000479898.5:ENST00000482145.5:ENST00000481841.5:ENST00000485845.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.71964	4.90246	5.08528	0.0718646	0.0086528	0.168159	0.0612699
chr22	45142445	45142544	7824725	0	-	0.50505	(0.485,0.523]	chr22	820747	28	INTRON	INTRON	NUP50-DT	ENSG00000226328.7	ENST00000426282.6:ENST00000609284.2:ENST00000432502.1	lncRNA	lncRNA	lncRNA	lncRNA	0	45	2	4.71964	4.90246	5.08528	0.0718646	0.0086528	0.168159	0.0612699
chr12	57112230	57112329	5439780	0	-	0.484848	(0.45,0.485]	chr12	535339	9	INTRON	INTRON	STAT6	ENSG00000166888.12	ENST00000556155.5:ENST00000553499.5	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.41963	4.90233	5.38503	0.0355247	0.0308908	0.137983	0.119556
chr22	49855487	49855586	7752797	0	+	0.464646	(0.45,0.485]	chr22	812301	11	INTRON	INTRON	ZBED4	ENSG00000100426.7	ENST00000216268.6	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.41963	4.90233	5.38503	0.0355247	0.0308908	0.137983	0.119556
chr11	68491369	68491469	4883787	0	+	0.55	(0.523,0.58]	chr11	470696	302	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	121	2	3.62324	4.902265	6.18129	0.0180195	5.34061e-4	0.0921579	0.0091384
chr14	63603267	63603367	5993052	0	-	0.38	(0.36,0.39]	chr14	587828	29	INTRON	INTRON	WDR89	ENSG00000140006.12	ENST00000620954.2:ENST00000394942.2:ENST00000267522.7:ENST00000554717.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.86249	4.902215	4.94194	0.064883	0.0181775	0.162218	0.0955836
chr3	188593074	188593174	1656201	0	+	0.37	(0.36,0.39]	chr3	173807	82	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000494233.5:ENST00000462758.1:ENST00000471917.1:ENST00000487347.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.86249	4.902215	4.94194	0.064883	0.0181775	0.162218	0.0955836
chr6	104780252	104780352	3214311	0	-	0.37	(0.36,0.39]	chr6	312078	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HACE1	ENSG00000085382.12	ENST00000262903.9:ENST00000369127.8:ENST00000416605.6:ENST00000517995.5:ENST00000369125.6:ENST00000518503.5:ENST00000517424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.86249	4.902215	4.94194	0.064883	0.0181775	0.162218	0.0955836
chr19	41376854	41376954	7263503	0	+	0.61	(0.58,1]	chr19	745092	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TMEM91	ENSG00000142046.15	ENST00000539627.5:ENST00000604123.5:ENST00000413014.6:ENST00000392002.7:ENST00000436170.6:ENST00000447302.6:ENST00000544232.5:ENST00000542945.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.74346	4.90208	5.0607	0.029633	0.0121457	0.116079	0.0754623
chr5	1102112	1102211	2608872	0	-	0.676768	(0.58,1]	chr5	259667	75	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.74346	4.90208	5.0607	0.029633	0.0121457	0.116079	0.0754623
chr1	11808286	11808385	28546	0	+	0.515152	(0.485,0.523]	chr1	3422	7	INTRON	INTRON	CLCN6	ENSG00000011021.23	ENST00000312413.10:ENST00000346436.11:ENST00000376497.7:ENST00000400892.3:ENST00000376496.4:ENST00000376492.3:ENST00000376490.7:ENST00000376491.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.8987	4.9020600000000005	4.90542	0.0561086	0.0129327	0.154188	0.0778105
chr16	81566976	81567076	6508963	0	+	0.5	(0.485,0.523]	chr16	645911	711	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.8987	4.9020600000000005	4.90542	0.0561086	0.0129327	0.154188	0.0778105
chr17	17721927	17722027	6689254	0	+	0.49	(0.485,0.523]	chr17	671338	370	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.8987	4.9020600000000005	4.90542	0.0561086	0.0129327	0.154188	0.0778105
chr18	74915121	74915221	7092433	0	+	0.49	(0.485,0.523]	chr18	722466	93	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.8987	4.9020600000000005	4.90542	0.0561086	0.0129327	0.154188	0.0778105
chr6	10587713	10587813	2850424	0	+	0.5	(0.485,0.523]	chr6	278695	4	INTRON	INTRON	GCNT2	ENSG00000111846.20	ENST00000410107.5:ENST00000489225.5:ENST00000397423.7:ENST00000495262.7:ENST00000475577.5:ENST00000489819.5:ENST00000474518.1:ENST00000379597.7:ENST00000485764.1:ENST00000461400.1:ENST00000316170.9:ENST00000459872.1:ENST00000265012.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	45	2	4.8987	4.9020600000000005	4.90542	0.0561086	0.0129327	0.154188	0.0778105
chr7	6699841	6699937	3542711	0	-	0.28125	[0,0.29]	chr7	342314	17	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000404360.5:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.82096	4.902	4.98304	0.0456837	0.00935344	0.142336	0.0646157
chr15	78039723	78039822	6336242	0	-	0.454545	(0.45,0.485]	chr15	624588	92	INTRON	INTRON	TBC1D2B	ENSG00000167202.12	ENST00000300584.8:ENST00000409931.7:ENST00000435468.1	protein_coding	protein_coding	protein_coding	protein_coding	1	102	2	3.63831	4.90191	6.16551	0.00879664	0.00630258	0.0630845	0.0501656
chr2	179258582	179258682	1328347	0	-	0.46	(0.45,0.485]	chr2	141710	664	INTRON	INTRON	SESTD1	ENSG00000187231.14	ENST00000428443.8:ENST00000440010.5:ENST00000435047.5:ENST00000452991.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	102	2	3.63831	4.90191	6.16551	0.00879664	0.00630258	0.0630845	0.0501656
chr6	87160530	87160629	2950095	0	+	0.292929	(0.29,0.33]	chr6	290360	44	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000392985.3:ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	100	2	4.03903	4.90186	5.76469	0.0139072	0.00219789	0.0805904	0.0245235
chr1	43558327	43558426	107022	0	+	0.666667	(0.58,1]	chr1	13192	40	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	92	2	3.79235	4.901845	6.01134	0.00531709	0.00302484	0.047841	0.0305643
chr9	124492529	124492629	4402649	0	-	0.6	(0.58,1]	chr9	419812	1	SS5_PROX	SS5_PROX:INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	3	304	2	4.86045	4.9018049999999995	4.94316	9.78301e-4	1.89167e-5	0.0187475	8.09425e-4
chr2	190966577	190966676	1348447	0	-	0.40404	(0.39,0.419]	chr2	142938	15	INTRON	INTRON	STAT1	ENSG00000115415.20	ENST00000673816.1:ENST00000673847.1:ENST00000415035.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.69798	4.901745	5.10551	0.088901	0.0112089	0.183874	0.071709
chr3	71422058	71422157	1829669	0	-	0.414141	(0.39,0.419]	chr3	188242	614	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000649145.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.69798	4.901745	5.10551	0.088901	0.0112089	0.183874	0.071709
chr15	98732618	98732718	6194171	0	+	0.48	(0.45,0.485]	chr15	609659	242	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	104	2	3.49993	4.901655	6.30338	0.00874614	0.00692617	0.0613439	0.0553898
chr19	45046068	45046167	7270068	0	+	0.585859	(0.58,1]	chr19	746627	54	INTRON	INTRON	CLASRP	ENSG00000104859.15	ENST00000221455.8:ENST00000391953.8:ENST00000591410.5:ENST00000592056.5:ENST00000391952.7:ENST00000588936.5:ENST00000544944.6:ENST00000587112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	93	2	3.68463	4.9016399999999996	6.11865	0.00429384	0.00404771	0.042386	0.0371291
chr1	2295888	2295988	5171	0	+	0.51	(0.485,0.523]	chr1	1052	475	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	103	2	4.29031	4.901605	5.5129	0.0229047	0.00107516	0.102982	0.0148869
chr17	7176901	7176980	6847842	0	-	0.78481	(0.58,1]	chr17	693462	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1:ENST00000573596.1:ENST00000573083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	415	2	4.40517	4.901495000000001	5.39782	2.83991e-4	3.1634e-5	0.00957277	0.00117125
chr7	55038239	55038339	3371737	0	+	0.5	(0.485,0.523]	chr7	325285	185	INTRON	INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000459688.1:ENST00000463948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	107	2	3.30597	4.90149	6.49701	0.012958	0.00420849	0.0778899	0.0421454
chr4	119213485	119213569	2114298	0	+	0.416667	(0.39,0.419]	chr4	214905	3	SS5_PROX	SS5_PROX:INTRON	USP53	ENSG00000145390.12	ENST00000514665.1:ENST00000692078.1:ENST00000450251.6:ENST00000274030.11:ENST00000507597.5:ENST00000514305.5:ENST00000688980.1:ENST00000510737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	46	2	4.86193	4.901265	4.9406	0.0658437	0.0182739	0.162385	0.0958352
chr5	119334529	119334629	2517252	0	+	0.41	(0.39,0.419]	chr5	249997	5	INTRON	INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5:ENST00000513374.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.86193	4.901265	4.9406	0.0658437	0.0182739	0.162385	0.0958352
chr8	8350409	8350509	3934110	0	-	0.41	(0.39,0.419]	chr8	376133	104	INTRON	INTRON	PRAG1	ENSG00000275342.5	ENST00000615670.5:ENST00000622241.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.86193	4.901265	4.9406	0.0658437	0.0182739	0.162385	0.0958352
chr6	144690825	144690924	3023978	0	+	0.464646	(0.45,0.485]	chr6	295451	119	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000367526.8	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.22352	4.90103	5.57854	0.0496712	0.0230065	0.160725	0.102982
chr1	93460096	93460196	185733	0	+	0.41	(0.39,0.419]	chr1	20160	114	INTRON	INTRON	FNBP1L	ENSG00000137942.18	ENST00000271234.13:ENST00000260506.12:ENST00000370253.6	protein_coding	protein_coding	protein_coding	protein_coding	0	53	2	4.20027	4.90061	5.60095	0.0583327	0.0263614	0.175217	0.110638
chr2	231372715	231372814	1050631	0	+	0.525253	(0.523,0.58]	chr2	114399	13	UTR3	UTR3:EXON_MRNA	ARMC9	ENSG00000135931.19	ENST00000611582.5:ENST00000684075.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	267	2	4.19556	4.900435	5.60531	0.00646345	1.96574e-5	0.0531182	8.29491e-4
chr1	226944779	226944879	355640	0	+	0.51	(0.485,0.523]	chr1	40145	38	INTRON	INTRON	COQ8A	ENSG00000163050.18	ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000489044.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	357	2	4.21548	4.90036	5.58524	0.0026584	2.19978e-5	0.0326974	9.00204e-4
chr10	91415147	91415246	4546567	0	+	0.40404	(0.39,0.419]	chr10	433731	42	INTRON	INTRON	HECTD2	ENSG00000165338.17	ENST00000631422.1:ENST00000446394.5:ENST00000298068.10:ENST00000371681.8	protein_coding	protein_coding	protein_coding	protein_coding	1	104	2	3.80039	4.90001	5.99963	0.0142473	0.00484195	0.0817691	0.0418176
chr20	48933302	48933402	7490268	0	+	0.59	(0.58,1]	chr20	780774	109	INTRON	INTRON	ARFGEF2	ENSG00000124198.10	ENST00000371917.5:ENST00000681399.1:ENST00000679436.1:ENST00000681885.1:ENST00000681021.1:ENST00000680871.1:ENST00000681656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	122	2	3.48788	4.899905	6.31193	0.00289626	0.00208277	0.03418	0.0237357
chr20	34603870	34603969	7547471	0	-	0.50505	(0.485,0.523]	chr20	787882	149	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1:ENST00000480175.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	101	2	3.57804	4.89987	6.2217	0.00693912	0.00685872	0.0553898	0.0526888
chr15	24984716	24984815	6063692	0	+	0.464646	(0.45,0.485]	chr15	595387	24	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	4	496	2	4.699	4.899604999999999	5.10021	0.00115839	2.80108e-5	0.0205878	0.00107208
chr19	19051321	19051421	7225412	0	+	0.54	(0.523,0.58]	chr19	739570	3	SS3_PROX	SS3_PROX:INTRON	ARMC6	ENSG00000105676.14	ENST00000392335.6:ENST00000537263.5:ENST00000535612.6:ENST00000269932.10:ENST00000541725.5:ENST00000546344.5:ENST00000540792.5:ENST00000536098.5:ENST00000541898.5:ENST00000539985.5:ENST00000545091.5:ENST00000535288.1:ENST00000538663.5:ENST00000392336.7:ENST00000535758.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	100	2	4.14168	4.899585	5.65749	0.0182707	0.00157839	0.0921579	0.0195793
chr5	55402678	55402776	2422551	0	+	0.357143	(0.33,0.36]	chr5	241608	19	INTRON	INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	124	2	3.24468	4.899559999999999	6.55444	0.0359208	2.86128e-4	0.127853	0.00586813
chr16	87740123	87740223	6656482	0	-	0.53	(0.523,0.58]	chr16	665892	91	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	99	2	4.04167	4.899545	5.75742	0.0155135	0.00206682	0.0849828	0.0235758
chr19	1172924	1173024	7305782	0	-	0.43	(0.419,0.45]	chr19	753058	39	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.47684	4.899395	5.32195	0.0431627	0.0389508	0.142578	0.138403
chr11	70739086	70739186	5061672	0	-	0.59	(0.58,1]	chr11	492701	212	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.49116	4.899315	5.30747	0.0207449	0.0196049	0.102713	0.0955413
chr12	132546904	132547004	5353085	0	+	0.65	(0.58,1]	chr12	523670	186	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.49116	4.899315	5.30747	0.0207449	0.0196049	0.102713	0.0955413
chr19	1167594	1167694	7305728	0	-	0.65	(0.58,1]	chr19	753054	126	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5:ENST00000587655.2	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.49116	4.899315	5.30747	0.0207449	0.0196049	0.102713	0.0955413
chr9	134337039	134337139	4260793	0	+	0.63	(0.58,1]	chr9	406311	100	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.49116	4.899315	5.30747	0.0207449	0.0196049	0.102713	0.0955413
chr1	112425857	112425957	208427	0	+	0.38	(0.36,0.39]	chr1	23004	92	INTRON	INTRON	CTTNBP2NL	ENSG00000143079.15	ENST00000271277.11:ENST00000441739.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.64834	4.898960000000001	5.14958	0.0493212	0.0272056	0.146207	0.119337
chr12	72166837	72166937	5270506	0	+	0.39	(0.36,0.39]	chr12	513939	38	INTRON	INTRON	TPH2	ENSG00000139287.13	ENST00000547348.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	47	2	4.64834	4.898960000000001	5.14958	0.0493212	0.0272056	0.146207	0.119337
chr9	123885517	123885616	4401449	0	-	0.373737	(0.36,0.39]	chr9	419733	61	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.64834	4.898960000000001	5.14958	0.0493212	0.0272056	0.146207	0.119337
chr2	111420209	111420309	1252838	0	-	0.56	(0.523,0.58]	chr2	134896	419	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1	lncRNA	lncRNA	lncRNA	lncRNA	0	45	2	4.65157	4.898795	5.14602	0.0787008	0.00734367	0.175203	0.0550721
chr17	80560576	80560676	6809058	0	+	0.63	(0.58,1]	chr17	687806	144	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	92	2	4.13012	4.89855	5.66698	0.0102927	0.00116063	0.0684871	0.0157704
chr10	96519789	96519888	4739800	0	-	0.323232	(0.29,0.33]	chr10	452337	18	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	141	2	2.95137	4.898515	6.84566	0.0113	0.00190387	0.0718399	0.0273003
chr20	62958368	62958464	7508280	0	+	0.645833	(0.58,1]	chr20	783180	4	INTRON	INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	111	2	3.79598	4.898385	6.00079	0.00940557	4.59827e-4	0.0653252	0.00821903
chr1	31580702	31580799	81054	0	+	0.371134	(0.36,0.39]	chr1	9290	5	INTRON	INTRON	LINC01226:TINAGL1	ENSG00000284543.1:ENSG00000142910.16	ENST00000639839.1:ENST00000640226.1:ENST00000457433.6:ENST00000271064.12:ENST00000461030.5:ENST00000478398.5:ENST00000481165.5:ENST00000537531.2:ENST00000468635.5:ENST00000498429.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	55	2	4.09186	4.898215	5.70457	0.0687088	0.022152	0.193274	0.101784
chr1	61119326	61119425	146473	0	+	0.272727	[0,0.29]	chr1	17144	71	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	99	2	4.28488	4.89817	5.51146	0.0147753	9.52569e-4	0.0829204	0.0136805
chr2	99386618	99386718	858086	0	+	0.57	(0.523,0.58]	chr2	97211	33	INTRON	INTRON	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.83424	4.898105	4.96197	0.0521137	0.0144272	0.148503	0.0833845
chr9	137569332	137569431	4435757	0	-	0.545455	(0.523,0.58]	chr9	424466	38	INTRON	INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000475100.5:ENST00000472113.5:ENST00000485189.5:ENST00000467768.5:ENST00000477690.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.83424	4.898105	4.96197	0.0521137	0.0144272	0.148503	0.0833845
chr12	121220234	121220332	5341271	0	+	0.418367	(0.39,0.419]	chr12	521600	26	INTRON	INTRON	P2RX4	ENSG00000135124.16	ENST00000359949.11:ENST00000543430.5:ENST00000337233.9:ENST00000543984.5:ENST00000499638.6:ENST00000543318.5:ENST00000540930.5:ENST00000538701.5:ENST00000542067.5:ENST00000541187.5:ENST00000538417.2:ENST00000314442.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.64779	4.898009999999999	5.14823	0.0501234	0.0273358	0.147892	0.119337
chr3	48425433	48425533	1766688	0	-	0.69	(0.58,1]	chr3	182282	1	SS3_PROX	SS3_PROX:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	540	2	3.96011	4.897955	5.8358	1.00378e-4	6.52063e-5	0.00560072	0.00199329
chr11	68463522	68463622	4883508	0	+	0.3	(0.29,0.33]	chr11	470696	23	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.65868	4.89792	5.13716	0.0735584	0.00805226	0.17026	0.0582806
chr2	158496992	158497092	935350	0	+	0.32	(0.29,0.33]	chr2	103367	383	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.65868	4.89792	5.13716	0.0735584	0.00805226	0.17026	0.0582806
chr9	14837256	14837356	4280087	0	-	0.55	(0.523,0.58]	chr9	408973	119	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	224	2	2.46011	4.89771	7.33531	0.0107619	8.42028e-4	0.0703303	0.0172456
chr13	75480769	75480869	5727992	0	-	0.55	(0.523,0.58]	chr13	561723	1	SS5_PROX	SS5_PROX:INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	3	349	2	4.79971	4.897675	4.99564	0.00202295	3.12505e-5	0.0283135	0.00116064
chr3	37306627	37306727	1442040	0	+	0.26	[0,0.29]	chr3	153834	39	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000437131.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.54061	4.897675	5.25474	0.0235212	0.02298	0.110758	0.102982
chr16	81545781	81545881	6508751	0	+	0.61	(0.58,1]	chr16	645911	499	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	4	167	2	3.05592	4.897625	6.73933	0.00253207	0.00116939	0.0271327	0.0206836
chr10	102647516	102647616	4576499	0	+	0.6	(0.58,1]	chr10	437280	13	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	122	2	3.43872	4.89759	6.35646	0.00264106	0.00239935	0.0325876	0.0261006
chr19	56645267	56645367	7295371	0	+	0.45	(0.419,0.45]	chr19	751256	3	SS3_PROX	SS3_PROX:INTRON	SMIM17	ENSG00000268182.6	ENST00000598409.6:ENST00000600547.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.7549	4.89747	5.04004	0.0888907	0.0137308	0.183874	0.0814223
chr4	113617891	113617990	2312996	0	-	0.343434	(0.33,0.36]	chr4	232464	83	INTRON	INTRON	CAMK2D	ENSG00000145349.18	ENST00000683023.1:ENST00000296402.9:ENST00000511664.6:ENST00000394524.7:ENST00000342666.9:ENST00000514328.5:ENST00000515496.5:ENST00000394522.7:ENST00000505990.5:ENST00000379773.6:ENST00000508738.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.57035	4.8974150000000005	5.22448	0.0945416	0.00791583	0.188571	0.057762
chr14	89335256	89335356	6027455	0	-	0.43	(0.419,0.45]	chr14	591456	16	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	4.56048	4.8972750000000005	5.23407	0.0486006	0.0337332	0.145074	0.133139
chr3	195710473	195710572	1665023	0	+	0.494949	(0.485,0.523]	chr3	174623	10	INTRON	INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000420851.6:ENST00000431767.5:ENST00000451228.5:ENST00000438608.5:ENST00000445707.3:ENST00000630874.2:ENST00000432194.7:ENST00000420459.5:ENST00000424730.5:ENST00000417704.5:ENST00000595086.5:ENST00000600197.1:ENST00000594446.5:ENST00000629537.2:ENST00000627035.2:ENST00000631359.2:ENST00000629721.2:ENST00000597662.5:ENST00000599566.5:ENST00000600288.5:ENST00000626872.2:ENST00000630197.2:ENST00000594976.5:ENST00000612098.4:ENST00000615212.4:ENST00000594101.3:ENST00000628439.2:ENST00000631352.2:ENST00000626904.2:ENST00000600382.5:ENST00000627863.2:ENST00000628668.2:ENST00000628053.2:ENST00000625971.2:ENST00000630675.2:ENST00000597982.5:ENST00000630387.2:ENST00000626585.2:ENST00000595382.5:ENST00000627016.2:ENST00000626566.2:ENST00000625383.2:ENST00000626979.2:ENST00000628392.2:ENST00000627471.2:ENST00000625531.2:ENST00000626852.2:ENST00000593988.2:ENST00000626233.2:ENST00000628508.2:ENST00000628003.2:ENST00000631263.2:ENST00000629511.2:ENST00000627356.2:ENST00000631345.2:ENST00000631037.2:ENST00000626346.2:ENST00000628567.2:ENST00000432601.3:ENST00000627689.2:ENST00000628754.2:ENST00000629807.2:ENST00000628125.2:ENST00000630415.2:ENST00000627609.1:ENST00000627993.2:ENST00000628982.1:ENST00000597871.1:ENST00000455807.2:ENST00000627297.2:ENST00000625665.1:ENST00000626093.1	lncRNA	lncRNA	lncRNA	lncRNA	0	45	2	4.65198	4.89723	5.14248	0.0783889	0.00761903	0.175203	0.0561937
chr18	37192094	37192194	7053105	0	+	0.38	(0.36,0.39]	chr18	719915	187	INTRON	INTRON	KIAA1328	ENSG00000150477.15	ENST00000592611.5:ENST00000280020.10:ENST00000590617.5:ENST00000587139.5:ENST00000591619.5:ENST00000586135.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	51	2	4.30212	4.8971800000000005	5.49224	0.0494303	0.0304242	0.160725	0.11845
chr13	48406136	48406236	5587469	0	+	0.36	(0.33,0.36]	chr13	551019	243	INTRON	INTRON	RB1	ENSG00000139687.16	ENST00000650461.1:ENST00000267163.6:ENST00000643064.1	protein_coding	protein_coding	protein_coding	protein_coding	1	102	2	3.838	4.897114999999999	5.95623	0.0129408	0.00414833	0.0775979	0.0377122
chr3	9469070	9469169	1402849	0	+	0.484848	(0.45,0.485]	chr3	150230	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000406341.5:ENST00000670063.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000466242.5:ENST00000682236.1:ENST00000421188.1:ENST00000687014.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	101	2	3.70282	4.89706	6.0913	0.00998516	0.00539085	0.0673647	0.0450882
chr11	70812667	70812767	5062410	0	-	0.7	(0.58,1]	chr11	492713	51	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.58025	4.89701	5.21377	0.0230012	0.0172566	0.102982	0.0923809
chr16	85375242	85375342	6516823	0	+	0.68	(0.58,1]	chr16	646391	159	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.58025	4.89701	5.21377	0.0230012	0.0172566	0.102982	0.0923809
chr17	82717096	82717196	6818048	0	+	0.63	(0.58,1]	chr17	689118	2	SS5_PROX	SS5_PROX:INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.58025	4.89701	5.21377	0.0230012	0.0172566	0.102982	0.0923809
chr22	17103677	17103777	7683229	0	+	0.64	(0.58,1]	chr22	803623	1	SS5_PROX	SS5_PROX:INTRON	IL17RA	ENSG00000177663.15	ENST00000319363.11:ENST00000612619.2:ENST00000694951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.58025	4.89701	5.21377	0.0230012	0.0172566	0.102982	0.0923809
chr13	113048234	113048333	5656117	0	+	0.282828	[0,0.29]	chr13	555180	10	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.68855	4.896655	5.10476	0.0554735	0.0071055	0.154188	0.0541241
chr8	9773020	9773118	3754908	0	+	0.255102	[0,0.29]	chr8	360888	2	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.68855	4.896655	5.10476	0.0554735	0.0071055	0.154188	0.0541241
chr1	243481143	243481242	370446	0	+	0.50505	(0.485,0.523]	chr1	41881	49	INTRON	INTRON	SDCCAG8	ENSG00000054282.16	ENST00000366541.8:ENST00000435549.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.83072	4.896555	4.96239	0.0518747	0.0148956	0.148503	0.0847741
chr17	38741631	38741730	6895591	0	-	0.50505	(0.485,0.523]	chr17	700401	8	INTRON	INTRON	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000611883.4:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.83072	4.896555	4.96239	0.0518747	0.0148956	0.148503	0.0847741
chr20	50525981	50526081	7493637	0	+	0.49	(0.485,0.523]	chr20	781416	150	INTRON	INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.83072	4.896555	4.96239	0.0518747	0.0148956	0.148503	0.0847741
chr4	885682	885782	2178459	0	-	0.49	(0.485,0.523]	chr4	220625	12	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.83072	4.896555	4.96239	0.0518747	0.0148956	0.148503	0.0847741
chr3	99929419	99929519	1518241	0	+	0.37	(0.36,0.39]	chr3	161648	1110	INTRON	INTRON	CMSS1	ENSG00000184220.12	ENST00000463526.1:ENST00000421999.8:ENST00000491299.5:ENST00000496116.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	46	2	4.6317	4.896375000000001	5.16105	0.0950937	0.00993384	0.189021	0.0666221
chr14	68900461	68900561	5999344	0	-	0.55	(0.523,0.58]	chr14	588705	2	SS5_PROX	SS5_PROX:INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	262	2	4.73426	4.89616	5.05806	0.00230167	1.09958e-4	0.0302623	0.00294529
chr16	22424213	22424312	6566806	0	-	0.555556	(0.523,0.58]	chr16	655121	16	INTRON	INTRON	CDR2:RRN3P3	ENSG00000140743.8:ENSG00000257122.5	ENST00000564542.5:ENST00000563573.5:ENST00000569045.1:ENST00000551766.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	1	107	2	4.4841	4.896025	5.30795	0.0315825	6.06023e-4	0.120781	0.0100269
chr3	13199526	13199626	1691137	0	-	0.65	(0.58,1]	chr3	176566	350	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	2	227	2	4.47828	4.895985	5.31369	0.00227919	2.61641e-5	0.0301641	0.00101763
chr1	822210	822310	379732	0	-	0.59	(0.58,1]	chr1	42663	437	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000634337.2:ENST00000635509.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	47	2	4.3962	4.89583	5.39546	0.0250928	0.0168207	0.114418	0.0884836
chr16	85510685	85510785	6518178	0	+	0.65	(0.58,1]	chr16	646391	1514	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.3962	4.89583	5.39546	0.0250928	0.0168207	0.114418	0.0884836
chr22	46617185	46617285	7744347	0	+	0.59	(0.58,1]	chr22	812034	395	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000447351.5:ENST00000431155.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.3962	4.89583	5.39546	0.0250928	0.0168207	0.114418	0.0884836
chr3	32819531	32819631	1438887	0	+	0.53	(0.523,0.58]	chr3	153401	2	INTRON	INTRON	TRIM71	ENSG00000206557.6	ENST00000383763.6	protein_coding	protein_coding	protein_coding	protein_coding	1	99	2	3.69181	4.89571	6.09961	0.00866655	0.00510333	0.0623824	0.0433857
chr18	76423361	76423461	7179353	0	-	0.45	(0.419,0.45]	chr18	730080	427	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	1	130	2	3.13761	4.89569	6.65377	0.0472779	2.95666e-4	0.143504	0.00601525
chr17	32821438	32821537	6886791	0	-	0.373737	(0.36,0.39]	chr17	698996	268	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000579584.5:ENST00000583621.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.79458	4.89565	4.99672	0.0604395	0.0207145	0.158506	0.102713
chr2	239344384	239344484	1392154	0	-	0.37	(0.36,0.39]	chr2	148752	199	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.79458	4.89565	4.99672	0.0604395	0.0207145	0.158506	0.102713
chr6	117585846	117585946	3242215	0	-	0.37	(0.36,0.39]	chr6	314277	64	INTRON	INTRON	GOPC	ENSG00000047932.14	ENST00000052569.10:ENST00000368498.7:ENST00000535237.2	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.79458	4.89565	4.99672	0.0604395	0.0207145	0.158506	0.102713
chr13	26606266	26606366	5553203	0	+	0.41	(0.39,0.419]	chr13	547991	481	INTRON	INTRON	WASF3	ENSG00000132970.14	ENST00000335327.6:ENST00000361042.8:ENST00000671038.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.63037	4.8954249999999995	5.16048	0.0963077	0.00999413	0.189169	0.0667545
chr19	16131238	16131332	7216451	0	+	0.404255	(0.39,0.419]	chr19	737377	13	INTRON	INTRON	RAB8A	ENSG00000167461.12	ENST00000300935.8:ENST00000586682.1:ENST00000592971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.63037	4.8954249999999995	5.16048	0.0963077	0.00999413	0.189169	0.0667545
chr1	17674085	17674185	54952	0	+	0.47	(0.45,0.485]	chr1	5603	91	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	109	2	3.26377	4.89503	6.52629	0.0149252	0.00466172	0.0848525	0.044542
chr16	85373243	85373343	6516803	0	+	0.58	(0.523,0.58]	chr16	646391	139	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.23973	4.894925	5.55012	0.0444247	0.0217068	0.153511	0.100615
chr17	40826459	40826558	6734821	0	+	0.414141	(0.39,0.419]	chr17	677416	68	INTRON	INTRON	KRT10-AS1	ENSG00000167920.11	ENST00000436612.5:ENST00000301665.8:ENST00000668620.1:ENST00000692645.1:ENST00000666187.1:ENST00000654043.1:ENST00000662074.1	lncRNA	lncRNA	lncRNA	lncRNA	0	46	2	4.79402	4.8947	4.99538	0.0613573	0.0208208	0.158506	0.102713
chr17	17829371	17829471	6865817	0	-	0.45	(0.419,0.45]	chr17	695923	54	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	2	298	2	4.85658	4.89462	4.93266	0.00279823	2.70433e-4	0.0335787	0.0056322
chr22	32818397	32818497	7717793	0	+	0.55	(0.523,0.58]	chr22	807776	159	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	2	202	2	3.94536	4.894545	5.84373	0.00453339	0.00133116	0.0436911	0.0173248
chr13	30274872	30274972	5679576	0	-	0.54	(0.523,0.58]	chr13	557737	189	INTRON	INTRON	KATNAL1	ENSG00000102781.14	ENST00000380615.8:ENST00000380617.7:ENST00000414289.5:ENST00000441394.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.5249	4.8941099999999995	5.26332	0.0337698	0.0266135	0.124319	0.118113
chr17	29140721	29140821	6876578	0	-	0.55	(0.523,0.58]	chr17	698022	4	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000585573.6:ENST00000590565.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.5249	4.8941099999999995	5.26332	0.0337698	0.0266135	0.124319	0.118113
chr19	7270195	7270295	7324978	0	-	0.54	(0.523,0.58]	chr19	756833	19	INTRON	INTRON	INSR	ENSG00000171105.14	ENST00000341500.9:ENST00000302850.10:ENST00000598216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	4.5249	4.8941099999999995	5.26332	0.0337698	0.0266135	0.124319	0.118113
chr21	43725866	43725965	7623852	0	+	0.555556	(0.523,0.58]	chr21	796696	21	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000438837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.5249	4.8941099999999995	5.26332	0.0337698	0.0266135	0.124319	0.118113
chr3	194728538	194728634	1663455	0	+	0.572917	(0.523,0.58]	chr3	174391	10	INTRON	INTRON	LINC01968	ENSG00000237222.4	ENST00000654487.1:ENST00000423318.1:ENST00000668747.1:ENST00000669157.1:ENST00000658471.1:ENST00000667646.1:ENST00000670468.1:ENST00000664066.1:ENST00000669045.1:ENST00000670809.1	lncRNA	lncRNA	lncRNA	lncRNA	0	47	2	4.5249	4.8941099999999995	5.26332	0.0337698	0.0266135	0.124319	0.118113
chr5	168415749	168415845	2588971	0	+	0.552083	(0.523,0.58]	chr5	256707	13	EXON_MRNA	EXON_MRNA:INTRON	WWC1	ENSG00000113645.15	ENST00000265293.9:ENST00000521089.5:ENST00000393895.7:ENST00000517425.5:ENST00000524228.5:ENST00000624315.1:ENST00000518334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:TEC:processed_transcript	0	47	2	4.5249	4.8941099999999995	5.26332	0.0337698	0.0266135	0.124319	0.118113
chr6	26365352	26365452	2887029	0	+	0.56	(0.523,0.58]	chr6	280809	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	BTN3A2	ENSG00000186470.14	ENST00000396934.7:ENST00000508906.6:ENST00000532865.5:ENST00000527417.5:ENST00000530653.5:ENST00000377708.7:ENST00000524682.5:ENST00000528222.1:ENST00000532627.5:ENST00000524459.5:ENST00000356386.6:ENST00000527422.5:ENST00000528541.1:ENST00000396948.5:ENST00000532994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.5249	4.8941099999999995	5.26332	0.0337698	0.0266135	0.124319	0.118113
chr9	133850399	133850499	4428902	0	-	0.55	(0.523,0.58]	chr9	423304	157	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.5249	4.8941099999999995	5.26332	0.0337698	0.0266135	0.124319	0.118113
chr2	239275681	239275781	1391465	0	-	0.64	(0.58,1]	chr2	148740	241	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	91	2	3.9863	4.8941	5.8019	0.007984	0.0017591	0.0596361	0.0211077
chr1	230669931	230670030	361872	0	+	0.474747	(0.45,0.485]	chr1	40762	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	COG2	ENSG00000135775.14	ENST00000366669.9:ENST00000494371.5:ENST00000468893.6:ENST00000366668.7:ENST00000534989.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	4.83755	4.894055	4.95056	0.06646	0.0127826	0.162385	0.0773423
chr11	70765566	70765666	5061937	0	-	0.46	(0.45,0.485]	chr11	492701	477	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.83755	4.894055	4.95056	0.06646	0.0127826	0.162385	0.0773423
chr11	71067658	71067758	5064970	0	-	0.48	(0.45,0.485]	chr11	492754	107	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000618363.4:ENST00000458632.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	45	2	4.83755	4.894055	4.95056	0.06646	0.0127826	0.162385	0.0773423
chr12	419930	420029	5148384	0	+	0.474747	(0.45,0.485]	chr12	500517	9	INTRON	INTRON	CCDC77	ENSG00000120647.10	ENST00000540180.5:ENST00000422000.5:ENST00000543504.5:ENST00000540344.5:ENST00000412006.6:ENST00000239830.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.83755	4.894055	4.95056	0.06646	0.0127826	0.162385	0.0773423
chr18	49292401	49292501	7160596	0	-	0.47	(0.45,0.485]	chr18	727903	54	INTRON	INTRON	DYM	ENSG00000141627.14	ENST00000675505.1:ENST00000269445.10:ENST00000442713.6:ENST00000584983.5:ENST00000418472.6:ENST00000580615.1:ENST00000583225.5:ENST00000581738.5:ENST00000583280.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.83755	4.894055	4.95056	0.06646	0.0127826	0.162385	0.0773423
chr2	48353648	48353748	793243	0	+	0.31	(0.29,0.33]	chr2	90414	65	INTRON	INTRON	FOXN2	ENSG00000170802.17	ENST00000413569.5:ENST00000340553.8	protein_coding	protein_coding	protein_coding	protein_coding	1	99	2	3.75928	4.893975	6.02867	0.00880071	0.0045073	0.0630883	0.0400499
chr1	173444095	173444195	619034	0	-	0.43	(0.419,0.45]	chr1	73247	16	INTRON	INTRON	PRDX6-AS1	ENSG00000203739.5	ENST00000669220.1:ENST00000661267.1:ENST00000660739.1:ENST00000367716.3:ENST00000659863.1	lncRNA	lncRNA	lncRNA	lncRNA	0	46	2	4.69033	4.8937550000000005	5.09718	0.0958674	0.012235	0.189038	0.0757339
chr1	246074855	246074955	701530	0	-	0.44	(0.419,0.45]	chr1	82406	214	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000464398.1:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.69033	4.8937550000000005	5.09718	0.0958674	0.012235	0.189038	0.0757339
chr5	76427006	76427106	2457367	0	+	0.43	(0.419,0.45]	chr5	245476	221	INTRON	INTRON	IQGAP2	ENSG00000145703.17	ENST00000274364.11:ENST00000692467.1:ENST00000514350.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.69033	4.8937550000000005	5.09718	0.0958674	0.012235	0.189038	0.0757339
chr5	76505251	76505350	2458152	0	+	0.444444	(0.419,0.45]	chr5	245482	423	INTRON	INTRON	IQGAP2	ENSG00000145703.17	ENST00000274364.11:ENST00000514350.5	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.69033	4.8937550000000005	5.09718	0.0958674	0.012235	0.189038	0.0757339
chr6	154452056	154452156	3296963	0	-	0.45	(0.419,0.45]	chr6	319119	14	INTRON	INTRON	CNKSR3	ENSG00000153721.19	ENST00000607772.6:ENST00000479339.5	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.69033	4.8937550000000005	5.09718	0.0958674	0.012235	0.189038	0.0757339
chr1	821711	821810	379727	0	-	0.535354	(0.523,0.58]	chr1	42663	432	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000634337.2:ENST00000635509.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	48	2	4.43597	4.893605	5.35124	0.0313935	0.0295772	0.127822	0.116079
chr11	77789752	77789852	5085137	0	-	0.58	(0.523,0.58]	chr11	494797	247	INTRON	INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	4.43597	4.893605	5.35124	0.0313935	0.0295772	0.127822	0.116079
chr16	85459306	85459406	6517664	0	+	0.54	(0.523,0.58]	chr16	646391	1000	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.43597	4.893605	5.35124	0.0313935	0.0295772	0.127822	0.116079
chr18	77033876	77033976	7180653	0	-	0.53	(0.523,0.58]	chr18	730157	162	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000580402.5:ENST00000580473.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000495162.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.43597	4.893605	5.35124	0.0313935	0.0295772	0.127822	0.116079
chr2	235047805	235047904	1062453	0	+	0.525253	(0.523,0.58]	chr2	115634	42	INTRON	INTRON	SH3BP4	ENSG00000130147.16	ENST00000392011.7:ENST00000409212.5:ENST00000344528.8	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.43597	4.893605	5.35124	0.0313935	0.0295772	0.127822	0.116079
chr8	38771791	38771890	3802273	0	+	0.555556	(0.523,0.58]	chr8	365828	140	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.43597	4.893605	5.35124	0.0313935	0.0295772	0.127822	0.116079
chr7	47534904	47535003	3589163	0	-	0.494949	(0.485,0.523]	chr7	346144	54	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	101	2	3.54218	4.893515	6.24485	0.00747698	0.00665813	0.0555092	0.0540577
chr11	46973726	46973826	4852774	0	+	0.45	(0.419,0.45]	chr11	464420	252	INTRON	INTRON	C11orf49	ENSG00000149179.14	ENST00000533124.5:ENST00000528488.5:ENST00000525279.5:ENST00000522712.6:ENST00000527234.5:ENST00000531648.5:ENST00000378618.6:ENST00000532840.5:ENST00000278460.12:ENST00000395460.6:ENST00000378615.7:ENST00000532633.5:ENST00000525895.5:ENST00000526424.5:ENST00000527784.5:ENST00000527667.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.85365	4.893275	4.9329	0.0716557	0.0197641	0.168159	0.100774
chr16	72624539	72624639	6624816	0	-	0.43	(0.419,0.45]	chr16	663482	66	INTRON	INTRON	LINC01572	ENSG00000261008.8	ENST00000624829.4:ENST00000561611.2:ENST00000656218.1:ENST00000666555.2:ENST00000664155.1:ENST00000657725.1:ENST00000563770.5:ENST00000668081.1:ENST00000570152.2:ENST00000662171.1:ENST00000691892.1:ENST00000659470.1:ENST00000655530.1:ENST00000570035.5:ENST00000563823.6	lncRNA	lncRNA	lncRNA	lncRNA	0	46	2	4.85365	4.893275	4.9329	0.0716557	0.0197641	0.168159	0.100774
chr7	78741268	78741368	3619398	0	-	0.43	(0.419,0.45]	chr7	349188	1137	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000629359.2:ENST00000637441.1:ENST00000626691.2:ENST00000522391.3:ENST00000637486.1:ENST00000630991.2:ENST00000628781.1:ENST00000636717.1:ENST00000636993.1:ENST00000676103.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.85365	4.893275	4.9329	0.0716557	0.0197641	0.168159	0.100774
chr1	81891924	81892024	171071	0	+	0.35	(0.33,0.36]	chr1	18909	545	INTRON	INTRON	ADGRL2	ENSG00000117114.21	ENST00000370728.5:ENST00000370730.5:ENST00000370721.5:ENST00000370723.5:ENST00000370725.5:ENST00000370727.5:ENST00000469377.6:ENST00000359929.7:ENST00000674419.1:ENST00000674442.1:ENST00000674489.1:ENST00000674209.1:ENST00000674307.1:ENST00000674168.1:ENST00000674407.1:ENST00000370717.6:ENST00000627151.2:ENST00000319517.10:ENST00000370713.5:ENST00000370715.5:ENST00000674492.1:ENST00000674373.1:ENST00000674410.1:ENST00000674367.1:ENST00000686636.1:ENST00000674333.1:ENST00000674393.1:ENST00000674208.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.57958	4.893225	5.20687	0.041040600000000003	0.0288057	0.136289	0.123764
chr17	17728157	17728257	6689317	0	+	0.55	(0.523,0.58]	chr17	671344	36	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	2	135	2	3.12569	4.893065	6.66044	0.00713962	0.00312705	0.0541241	0.0356998
chr11	70815765	70815865	5062441	0	-	0.59	(0.58,1]	chr11	492713	82	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.76284	4.892989999999999	5.02314	0.0471737	0.00638322	0.143232	0.0501889
chr17	1073977	1074077	6827375	0	-	0.65	(0.58,1]	chr17	690201	3	SS3_PROX	SS3_PROX:INTRON	ABR	ENSG00000159842.16	ENST00000574139.7:ENST00000302538.10:ENST00000544583.6:ENST00000574437.5:ENST00000291107.6:ENST00000536794.6:ENST00000576964.5:ENST00000571945.5:ENST00000573667.1:ENST00000570441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	43	2	4.76284	4.892989999999999	5.02314	0.0471737	0.00638322	0.143232	0.0501889
chr17	80273904	80274003	6807303	0	+	0.626263	(0.58,1]	chr17	687364	1	INTRON	INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000319921.4	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.76284	4.892989999999999	5.02314	0.0471737	0.00638322	0.143232	0.0501889
chr8	143487546	143487646	4096468	0	-	0.62	(0.58,1]	chr8	389272	22	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6:ENST00000528401.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.76284	4.892989999999999	5.02314	0.0471737	0.00638322	0.143232	0.0501889
chr16	20685075	20685175	6416309	0	+	0.58	(0.523,0.58]	chr16	634386	30	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	183	2	3.23248	4.892885	6.55329	0.00382069	0.0020948300000000002	0.0398603	0.0238576
chr11	70817164	70817264	5062455	0	-	0.59	(0.58,1]	chr11	492713	96	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.82753	4.892835	4.95814	0.0427798	0.0074469	0.13762	0.0553519
chr17	61398137	61398237	6939781	0	-	0.59	(0.58,1]	chr17	707563	28	INTRON	INTRON	TBX2-AS1	ENSG00000267280.6	ENST00000591313.6:ENST00000590421.1:ENST00000592009.1:ENST00000589814.5	lncRNA	lncRNA	lncRNA	lncRNA	0	43	2	4.82753	4.892835	4.95814	0.0427798	0.0074469	0.13762	0.0553519
chr10	79441015	79441114	4720810	0	-	0.555556	(0.523,0.58]	chr10	450462	79	INTRON	INTRON	ZCCHC24	ENSG00000165424.7	ENST00000372336.4:ENST00000372333.3	protein_coding	protein_coding	protein_coding	protein_coding	1	131	2	4.04945	4.8927700000000005	5.73609	0.00846308	0.0017613	0.0617717	0.0211077
chr2	241641555	241641655	1077926	0	+	0.43	(0.419,0.45]	chr2	117137	28	INTRON	INTRON	ATG4B	ENSG00000168397.17	ENST00000405546.7:ENST00000402096.5:ENST00000625810.2:ENST00000491867.5:ENST00000400772.6:ENST00000494465.5:ENST00000483778.5:ENST00000404914.8:ENST00000465399.5:ENST00000419606.5:ENST00000475195.5:ENST00000479554.5:ENST00000468018.5:ENST00000482507.5:ENST00000493618.5:ENST00000425239.5:ENST00000400771.7:ENST00000415107.5:ENST00000430617.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	53	2	4.19215	4.89265	5.59315	0.0617113	0.029494	0.18013	0.116079
chr1	156085280	156085380	250731	0	+	0.52	(0.485,0.523]	chr1	29429	17	INTRON	INTRON	LMNA	ENSG00000160789.24	ENST00000502751.5:ENST00000368301.6:ENST00000470835.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.52142	4.892585	5.26375	0.0335928	0.0273555	0.124319	0.119337
chr16	81644458	81644558	6509742	0	+	0.49	(0.485,0.523]	chr16	645926	224	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.52142	4.892585	5.26375	0.0335928	0.0273555	0.124319	0.119337
chr12	6338999	6339098	5362097	0	-	0.444444	(0.419,0.45]	chr12	525042	44	INTRON	INTRON	TNFRSF1A	ENSG00000067182.8	ENST00000534885.5:ENST00000162749.7:ENST00000543995.5:ENST00000540022.5:ENST00000539372.5:ENST00000366159.8:ENST00000543048.5:ENST00000440083.6:ENST00000536194.1:ENST00000535958.1:ENST00000538363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	105	2	3.90437	4.892405	5.88044	0.0192645	0.00396391	0.0954446	0.0368027
chr22	24286999	24287099	7696335	0	+	0.52	(0.485,0.523]	chr22	805626	98	INTRON	INTRON	SPECC1L:SPECC1L-ADORA2A	ENSG00000100014.20:ENSG00000258555.6	ENST00000437398.5:ENST00000421374.5:ENST00000314328.14:ENST00000651059.1:ENST00000541492.1:ENST00000416735.5:ENST00000358654.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	48	2	4.43249	4.89208	5.35167	0.0322299	0.0294163	0.12988	0.116079
chr17	77351398	77351498	6803873	0	+	0.56	(0.523,0.58]	chr17	686742	272	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	158	2	3.14095	4.892035	6.64312	0.00390973	0.00323048	0.0365257	0.0362983
chr2	102736029	102736129	1242158	0	-	0.47	(0.45,0.485]	chr2	133933	1	SS5_PROX	SS5_PROX:INTRON	MFSD9	ENSG00000135953.11	ENST00000258436.10:ENST00000438943.5:ENST00000437075.6:ENST00000411991.5:ENST00000421966.1:ENST00000462099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.67139	4.891845	5.1123	0.0458344	0.0223378	0.142336	0.108193
chr1	44802259	44802345	114930	0	+	0.476744	(0.45,0.485]	chr1	14241	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PLK3	ENSG00000173846.13	ENST00000372201.5:ENST00000465443.5:ENST00000476731.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.7111	4.89165	5.0722	0.0781398	0.00988295	0.175203	0.0664239
chr5	74839350	74839450	2692451	0	-	0.47	(0.45,0.485]	chr5	265988	3	SS3_PROX	SS3_PROX:INTRON	FAM169A	ENSG00000198780.13	ENST00000389156.9:ENST00000510496.5:ENST00000687041.1:ENST00000514215.5:ENST00000510609.5:ENST00000513277.5:ENST00000506954.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.7111	4.89165	5.0722	0.0781398	0.00988295	0.175203	0.0664239
chr17	17821320	17821420	6865734	0	-	0.59	(0.58,1]	chr17	695915	4	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	123	2	3.2803	4.8913	6.5023	0.00374905	0.00194503	0.0352817	0.0275844
chr1	10514237	10514336	26490	0	+	0.484848	(0.45,0.485]	chr1	3148	186	INTRON	INTRON	PEX14	ENSG00000142655.13	ENST00000472851.1:ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.88567	4.89126	4.89685	0.0614781	0.0146126	0.158506	0.0837727
chr2	72988648	72988748	1188684	0	-	0.46	(0.45,0.485]	chr2	128824	3	SS3_PROX	SS3_PROX:INTRON	SFXN5	ENSG00000144040.13	ENST00000272433.7:ENST00000461352.5:ENST00000474528.5:ENST00000411783.5:ENST00000410065.5:ENST00000482542.5:ENST00000463277.5:ENST00000416579.5:ENST00000464825.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.88567	4.89126	4.89685	0.0614781	0.0146126	0.158506	0.0837727
chr5	139160064	139160164	2772309	0	-	0.47	(0.45,0.485]	chr5	272014	47	INTRON	INTRON	SIL1	ENSG00000120725.13	ENST00000394817.7:ENST00000265195.9:ENST00000509534.5:ENST00000508639.5:ENST00000507002.5:ENST00000505830.5:ENST00000504666.5:ENST00000509400.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.88567	4.89126	4.89685	0.0614781	0.0146126	0.158506	0.0837727
chr11	70806302	70806401	5062346	0	-	0.555556	(0.523,0.58]	chr11	492707	74	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5:ENST00000460048.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.58058	4.89081	5.20104	0.0860403	0.00648051	0.181766	0.0503748
chr12	113839978	113840077	5509268	0	-	0.565657	(0.523,0.58]	chr12	542458	163	INTRON	INTRON	RBM19	ENSG00000122965.11	ENST00000545145.6:ENST00000392561.7:ENST00000261741.10:ENST00000552384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.58058	4.89081	5.20104	0.0860403	0.00648051	0.181766	0.0503748
chr16	1728439	1728538	6371220	0	+	0.545455	(0.523,0.58]	chr16	628837	34	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000685565.1:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	45	2	4.58058	4.89081	5.20104	0.0860403	0.00648051	0.181766	0.0503748
chr2	134143979	134144079	895670	0	+	0.56	(0.523,0.58]	chr2	101196	164	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	121	2	3.68393	4.890355	6.09678	0.0162298	6.74499e-4	0.0873195	0.0108081
chr17	82801396	82801496	6818873	0	+	0.65	(0.58,1]	chr17	689287	4	SS5_PROX	SS5_PROX:INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000682107.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.6951	4.89022	5.08534	0.0521567	0.00549379	0.148503	0.0454065
chr3	13025794	13025894	1689394	0	-	0.59	(0.58,1]	chr3	176542	33	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	1	108	2	3.51497	4.890205	6.26544	0.0161632	2.06156e-4	0.0872435	0.00461335
chr2	74863840	74863940	837327	0	+	0.44	(0.419,0.45]	chr2	94613	90	INTRON	INTRON	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1:ENST00000472302.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	47	2	4.63955	4.890025	5.1405	0.0550015	0.0293406	0.153337	0.125102
chr1	21651584	21651681	419985	0	-	0.608247	(0.58,1]	chr1	49027	3	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	RAP1GAP	ENSG00000076864.21	ENST00000374765.9:ENST00000471600.6:ENST00000542643.6:ENST00000611549.4:ENST00000495204.5:ENST00000374757.7:ENST00000317967.11:ENST00000447293.5:ENST00000482984.5:ENST00000464457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	109	2	3.68546	4.8899799999999995	6.0945	0.0116759	3.47472e-4	0.0735761	0.00673552
chr17	55277383	55277483	6757232	0	+	0.34	(0.33,0.36]	chr17	681704	89	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	439	2	4.54496	4.889945	5.23493	0.00100684	8.91196e-5	0.0191096	0.00250876
chr2	158590540	158590639	936299	0	+	0.292929	(0.29,0.33]	chr2	103407	17	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000421462.5:ENST00000462335.1:ENST00000481115.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.58769	4.889925	5.19216	0.0806047	0.00712176	0.177452	0.0541241
chr21	15794860	15794960	7591761	0	+	0.33	(0.29,0.33]	chr21	793743	28	INTRON	INTRON	USP25	ENSG00000155313.16	ENST00000400183.7:ENST00000285681.6:ENST00000285679.10:ENST00000351097.9:ENST00000547201.5:ENST00000549362.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.58769	4.889925	5.19216	0.0806047	0.00712176	0.177452	0.0541241
chr16	50621201	50621301	6452140	0	+	0.58	(0.523,0.58]	chr16	639913	2	SS3_PROX	SS3_PROX:INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	2	164	2	2.7533	4.889915	7.02653	0.0382579	4.44459e-5	0.131324	0.00150854
chr17	15481414	15481513	6860250	0	-	0.565657	(0.523,0.58]	chr17	695075	58	INTRON	INTRON	TVP23C-CDRT4:CDRT4	ENSG00000259024.6:ENSG00000239704.11	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.7629	4.889835	5.01677	0.0482765	0.0167014	0.144601	0.0917029
chr16	952475	952574	6531557	0	-	0.646465	(0.58,1]	chr16	648701	50	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	4.18518	4.889825	5.59447	0.0374658	0.0117666	0.139793	0.0737098
chr1	43983803	43983897	111000	0	+	0.670213	(0.58,1]	chr1	13827	5	INTRON	INTRON	B4GALT2	ENSG00000117411.18	ENST00000434555.7:ENST00000372324.6:ENST00000481924.2:ENST00000497866.6:ENST00000485678.6:ENST00000356836.10:ENST00000309519.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.88945	4.88976	4.89007	0.0388928	0.00872525	0.131324	0.0612699
chr14	104892875	104892975	5926155	0	+	0.67	(0.58,1]	chr14	580001	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.88945	4.88976	4.89007	0.0388928	0.00872525	0.131324	0.0612699
chr21	43957238	43957337	7625356	0	+	0.686869	(0.58,1]	chr21	796924	16	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000448845.1:ENST00000422850.5:ENST00000546158.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.88945	4.88976	4.89007	0.0388928	0.00872525	0.131324	0.0612699
chr21	44978831	44978919	7628644	0	+	0.704545	(0.58,1]	chr21	797500	1	EXON_LNCRNA	EXON_LNCRNA	ENSG00000276529	ENSG00000276529.1	ENST00000616815.1	lncRNA	lncRNA	lncRNA	lncRNA	0	43	2	4.88945	4.88976	4.89007	0.0388928	0.00872525	0.131324	0.0612699
chr17	60388182	60388282	6938529	0	-	0.27	[0,0.29]	chr17	707435	422	INTRON	INTRON	USP32	ENSG00000170832.13	ENST00000300896.9:ENST00000590133.5:ENST00000589335.5:ENST00000393003.7:ENST00000588898.1:ENST00000589761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.61749	4.889735	5.16198	0.061376	0.00622515	0.158506	0.0496245
chr17	80023702	80023802	6982153	0	-	0.74	(0.58,1]	chr17	713081	97	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7	protein_coding	protein_coding	protein_coding	protein_coding	1	93	2	4.26089	4.88951	5.51813	0.013519	7.87512e-4	0.0792526	0.0120243
chr16	3713936	3714035	6538298	0	-	0.424242	(0.419,0.45]	chr16	650227	31	INTRON	INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5:ENST00000571011.1:ENST00000570403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	55	2	4.08324	4.88932	5.6954	0.0727147	0.0254103	0.199502	0.108573
chr3	13024594	13024694	1689382	0	-	0.55	(0.523,0.58]	chr3	176542	21	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	2	259	2	4.6455	4.8891849999999994	5.13287	0.00273885	8.7318e-5	0.0332418	0.00247172
chr9	133926627	133926727	4429668	0	-	0.55	(0.523,0.58]	chr9	423317	3	SS3_PROX	SS3_PROX:INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1:ENST00000472905.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.60868	4.8891849999999994	5.16969	0.0387762	0.0226775	0.131324	0.108193
chr13	99215976	99216076	5636995	0	+	0.3	(0.29,0.33]	chr13	553688	101	INTRON	INTRON	UBAC2	ENSG00000134882.16	ENST00000355700.9:ENST00000403766.8:ENST00000468067.5:ENST00000473091.5:ENST00000376440.6:ENST00000457666.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.75412	4.889035	5.02395	0.0445554	0.0180435	0.140478	0.0952934
chr1	43592701	43592801	107377	0	+	0.66	(0.58,1]	chr1	13239	1	SS5_PROX	SS5_PROX:INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.66416	4.8888549999999995	5.11355	0.0271806	0.0144381	0.112113	0.0833845
chr13	32750754	32750852	5566250	0	+	0.591837	(0.58,1]	chr13	549221	43	INTRON	INTRON	PDS5B	ENSG00000083642.19	ENST00000315596.15:ENST00000450460.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.66416	4.8888549999999995	5.11355	0.0271806	0.0144381	0.112113	0.0833845
chr16	16182930	16183030	6556700	0	-	0.6	(0.58,1]	chr16	653130	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.66416	4.8888549999999995	5.11355	0.0271806	0.0144381	0.112113	0.0833845
chr17	82919759	82919858	6820099	0	+	0.606061	(0.58,1]	chr17	689447	58	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000576760.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.66416	4.8888549999999995	5.11355	0.0271806	0.0144381	0.112113	0.0833845
chr5	139651077	139651166	2549671	0	+	0.629214	(0.58,1]	chr5	253165	2	UTR5	UTR5:EXON_MRNA:INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.66416	4.8888549999999995	5.11355	0.0271806	0.0144381	0.112113	0.0833845
chr2	127387538	127387625	1265651	0	-	0.850575	(0.58,1]	chr2	136377	2	UTR5	UTR5:EXON_MRNA:INTRON	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5	protein_coding	protein_coding	protein_coding	protein_coding	1	93	2	3.60807	4.88876	6.16945	0.00495688	0.00387582	0.0425347	0.0401256
chr17	36512022	36512089	6889667	0	-	0.61194	(0.58,1]	chr17	699506	2	INTRON	INTRON	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000612097.1:ENST00000620413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	92	2	3.68463	4.888595	6.09256	0.00452436	0.00404771	0.0436138	0.0371291
chr17	29140821	29140921	6876579	0	-	0.49	(0.485,0.523]	chr17	698022	5	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000585573.6:ENST00000590565.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.75939	4.88829	5.01719	0.0480495	0.0172254	0.144601	0.0923809
chr22	50681965	50682062	7754989	0	+	0.494845	(0.485,0.523]	chr22	812716	22	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.75939	4.88829	5.01719	0.0480495	0.0172254	0.144601	0.0923809
chr6	30160946	30161034	3116220	0	-	0.5	(0.485,0.523]	chr6	302320	2	UTR5	UTR5:EXON_MRNA	TRIM10	ENSG00000204613.11	ENST00000449742.7	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.75939	4.88829	5.01719	0.0480495	0.0172254	0.144601	0.0923809
chr17	77214508	77214605	6803119	0	+	0.57732000000000006	(0.523,0.58]	chr17	686684	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	1	103	2	3.4003	4.88815	6.376	0.0103016	0.00529293	0.0678983	0.047841
chr2	73401941	73402041	830753	0	+	0.43	(0.419,0.45]	chr2	93921	154	INTRON	INTRON	ALMS1	ENSG00000116127.20	ENST00000484298.5:ENST00000613296.6:ENST00000614410.4:ENST00000682889.1:ENST00000682675.1:ENST00000684148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	133	2	3.7579	4.887925	6.01795	0.0183594	0.00152916	0.0925006	0.0191213
chr19	35002644	35002744	7244886	0	+	0.6	(0.58,1]	chr19	742069	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	127	2	3.07041	4.88786	6.70531	0.00661304	0.00125905	0.0512951	0.0215793
chr3	59787520	59787620	1791476	0	-	0.36	(0.33,0.36]	chr3	186773	348	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000466788.1:ENST00000468189.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.31234	4.88786	5.46338	0.0458858	0.0281891	0.154743	0.114124
chr12	116839466	116839566	5335859	0	+	0.51	(0.485,0.523]	chr12	520799	28	INTRON	INTRON	RNFT2	ENSG00000135119.15	ENST00000407967.7:ENST00000392549.7:ENST00000257575.9:ENST00000547718.5:ENST00000551251.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	46	2	4.60518	4.88765	5.17012	0.038581	0.0233371	0.131324	0.110098
chr12	57754635	57754734	5442149	0	-	0.535354	(0.523,0.58]	chr12	535644	23	INTRON	INTRON	CDK4	ENSG00000135446.17	ENST00000552862.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.34118	4.887645	5.43411	0.0372357	0.026041	0.139793	0.109673
chr19	6720087	6720180	7322988	0	-	0.44086	(0.419,0.45]	chr19	756567	3	SS5_PROX	SS5_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695652.1:ENST00000594936.2:ENST00000695693.1:ENST00000600744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	170	2	3.2329	4.887445	6.54199	0.00668959	0.00410797	0.0541558	0.0374453
chr12	53586676	53586776	5431435	0	-	0.42	(0.419,0.45]	chr12	533278	337	INTRON	INTRON	ATF7	ENSG00000170653.19	ENST00000548446.6:ENST00000420353.7:ENST00000456903.8:ENST00000588232.5:ENST00000551480.2:ENST00000588078.5:ENST00000591397.1:ENST00000548118.6	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.62273	4.887435	5.15214	0.103601	0.0109324	0.197541	0.0706366
chr2	239962284	239962384	1393439	0	-	0.45	(0.419,0.45]	chr2	148811	7	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000471378.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.62273	4.887435	5.15214	0.103601	0.0109324	0.197541	0.0706366
chr21	41829529	41829628	7673617	0	-	0.434343	(0.419,0.45]	chr21	801978	8	INTRON	INTRON	PRDM15	ENSG00000141956.14	ENST00000422911.6:ENST00000441787.5:ENST00000449395.6:ENST00000398548.6:ENST00000447016.6:ENST00000269844.5:ENST00000491486.5:ENST00000489661.5:ENST00000496124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.62273	4.887435	5.15214	0.103601	0.0109324	0.197541	0.0706366
chr7	156679586	156679686	3738896	0	-	0.42	(0.419,0.45]	chr7	359430	19	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	LMBR1	ENSG00000105983.23	ENST00000430825.3:ENST00000353442.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.62273	4.887435	5.15214	0.103601	0.0109324	0.197541	0.0706366
chr11	62569002	62569099	5044716	0	-	0.371134	(0.36,0.39]	chr11	489358	11	INTRON	INTRON	EEF1G	ENSG00000254772.10	ENST00000329251.5:ENST00000525340.5:ENST00000524420.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	46	2	4.56076	4.88738	5.214	0.103289	0.00887999	0.197541	0.0618231
chr3	186795962	186796060	1977150	0	-	0.377551	(0.36,0.39]	chr3	201012	8	INTRON	INTRON	RFC4	ENSG00000163918.12	ENST00000433496.5:ENST00000392481.6:ENST00000296273.7:ENST00000494047.5:ENST00000418288.5:ENST00000449502.5:ENST00000489028.1:ENST00000427785.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.56076	4.88738	5.214	0.103289	0.00887999	0.197541	0.0618231
chr4	128859726	128859824	2132085	0	+	0.377551	(0.36,0.39]	chr4	216567	19	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.56076	4.88738	5.214	0.103289	0.00887999	0.197541	0.0618231
chr12	48003341	48003441	5421214	0	-	0.59	(0.58,1]	chr12	531091	3	SS3_PROX	SS3_PROX:INTRON	COL2A1	ENSG00000139219.19	ENST00000380518.8:ENST00000337299.7:ENST00000474996.6:ENST00000490609.2:ENST00000465743.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	95	2	3.48503	4.887085	6.28914	0.006811	0.00303562	0.0524379	0.0350226
chr17	6908887	6908987	6675760	0	+	0.59	(0.58,1]	chr17	669364	68	INTRON	INTRON	ALOX12P2	ENSG00000262943.8	ENST00000574183.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	95	2	3.48503	4.887085	6.28914	0.006811	0.00303562	0.0524379	0.0350226
chr12	50642448	50642548	5230834	0	+	0.42	(0.419,0.45]	chr12	507719	12	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5:ENST00000546719.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.78575	4.88671	4.98767	0.0669167	0.0224633	0.16272	0.108193
chr13	19985864	19985964	5543068	0	+	0.42	(0.419,0.45]	chr13	547198	154	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382881.7:ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000620447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.78575	4.88671	4.98767	0.0669167	0.0224633	0.16272	0.108193
chr16	81458816	81458916	6507879	0	+	0.43	(0.419,0.45]	chr16	645906	129	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.78575	4.88671	4.98767	0.0669167	0.0224633	0.16272	0.108193
chr2	235895743	235895843	1066571	0	+	0.44	(0.419,0.45]	chr2	115730	119	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.78575	4.88671	4.98767	0.0669167	0.0224633	0.16272	0.108193
chr1	113472735	113472835	212017	0	+	0.34	(0.33,0.36]	chr1	23359	684	INTRON	INTRON	MAGI3	ENSG00000081026.19	ENST00000307546.14:ENST00000369617.8:ENST00000369615.5:ENST00000369611.4:ENST00000486456.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.77355	4.8867	4.99985	0.0735809	0.0127452	0.17026	0.0773423
chr10	75728946	75729046	4523453	0	+	0.51	(0.485,0.523]	chr10	432271	810	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	158	2	3.21949	4.88661	6.55373	0.00378829	0.00323132	0.0396337	0.0319521
chr1	2241726	2241825	4628	0	+	0.343434	(0.33,0.36]	chr1	1048	87	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.83538	4.886575000000001	4.93777	0.0679743	0.0144674	0.164413	0.0833845
chr13	26258068	26258168	5551227	0	+	0.35	(0.33,0.36]	chr13	547916	29	INTRON	INTRON	CDK8	ENSG00000132964.12	ENST00000536792.5:ENST00000381527.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.83538	4.886575000000001	4.93777	0.0679743	0.0144674	0.164413	0.0833845
chr17	49006152	49006251	6750109	0	+	0.343434	(0.33,0.36]	chr17	680305	14	INTRON	INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2:ENST00000515586.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.83538	4.886575000000001	4.93777	0.0679743	0.0144674	0.164413	0.0833845
chr14	103104563	103104650	5921861	0	+	0.643678	(0.58,1]	chr14	579214	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	108	2	3.59052	4.88651	6.1825	0.014012	2.66047e-4	0.0807513	0.00556524
chr16	85236465	85236565	6515433	0	+	0.59	(0.58,1]	chr16	646377	87	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	48	2	4.29454	4.886464999999999	5.47839	0.0305531	0.0145198	0.126768	0.0823104
chr16	85398332	85398432	6517054	0	+	0.64	(0.58,1]	chr16	646391	390	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.29454	4.886464999999999	5.47839	0.0305531	0.0145198	0.126768	0.0823104
chr20	36858774	36858873	7557089	0	-	0.474747	(0.45,0.485]	chr20	789155	190	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.64346	4.88642	5.12938	0.0850039	0.00873194	0.181766	0.0612699
chr10	79221972	79222072	4533581	0	+	0.57	(0.523,0.58]	chr10	432457	53	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	98	2	3.72444	4.88618	6.04792	0.00948306	0.00470358	0.0656057	0.0413976
chr1	223824993	223825090	669719	0	-	0.474227	(0.45,0.485]	chr1	78651	33	INTRON	INTRON	TP53BP2	ENSG00000143514.17	ENST00000343537.12:ENST00000391878.6:ENST00000473135.5:ENST00000465119.1:ENST00000472180.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.81772	4.885759999999999	4.9538	0.0569772	0.0167663	0.154343	0.0917029
chr15	98770132	98770232	6194547	0	+	0.46	(0.45,0.485]	chr15	609663	350	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1:ENST00000557938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	45	2	4.81772	4.885759999999999	4.9538	0.0569772	0.0167663	0.154343	0.0917029
chr5	10699171	10699271	2612028	0	-	0.41	(0.39,0.419]	chr5	260254	152	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	48	2	4.48504	4.885735	5.28643	0.041475	0.0364893	0.139793	0.136301
chr16	54105772	54105872	6461591	0	+	0.4	(0.39,0.419]	chr16	640652	329	INTRON	INTRON	FTO	ENSG00000140718.21	ENST00000471389.6:ENST00000636992.1:ENST00000637969.1:ENST00000637845.1:ENST00000637562.1:ENST00000464071.1:ENST00000612285.2:ENST00000431610.6:ENST00000460382.5:ENST00000463855.1:ENST00000635892.1:ENST00000268349.7:ENST00000472835.1:ENST00000636091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	46	2	4.72276	4.885455	5.04815	0.0572698	0.0238104	0.154343	0.111436
chr3	15037200	15037299	1417006	0	+	0.40404	(0.39,0.419]	chr3	152151	20	INTRON	INTRON	NR2C2	ENSG00000177463.16	ENST00000425241.6:ENST00000323373.10:ENST00000475707.5:ENST00000393102.7:ENST00000617312.4:ENST00000406272.6:ENST00000478572.1:ENST00000439011.5:ENST00000495282.1:ENST00000413194.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	46	2	4.72276	4.885455	5.04815	0.0572698	0.0238104	0.154343	0.111436
chr3	187733332	187733432	1978178	0	-	0.46	(0.45,0.485]	chr3	201202	4	SS5_PROX	SS5_PROX:INTRON	BCL6	ENSG00000113916.18	ENST00000621333.4:ENST00000406870.7:ENST00000419510.6:ENST00000232014.8:ENST00000450123.6:ENST00000430339.5:ENST00000480458.5:ENST00000438077.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	101	2	3.60494	4.885225	6.16551	0.00879664	0.00682726	0.0630845	0.0525149
chr19	18468397	18468495	7347875	0	-	0.530612	(0.523,0.58]	chr19	761486	21	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	130	2	4.03399	4.88504	5.73609	0.00870536	0.0017613	0.0626162	0.0211077
chr13	113053324	113053419	5656169	0	+	0.389474	(0.36,0.39]	chr13	555185	7	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.39677	4.88492	5.37307	0.0422707	0.0361409	0.149195	0.127853
chr2	235513932	235514032	1062735	0	+	0.4	(0.39,0.419]	chr2	115651	187	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	103	2	3.74353	4.884855	6.02618	0.0136549	0.00554536	0.0798074	0.0456911
chr6	154454054	154454154	3296983	0	-	0.46	(0.45,0.485]	chr6	319119	34	INTRON	INTRON	CNKSR3	ENSG00000153721.19	ENST00000607772.6:ENST00000479339.5	protein_coding	protein_coding	protein_coding	protein_coding	1	123	2	3.12123	4.88461	6.64799	0.0428769	1.80357e-4	0.137868	0.00419938
chr22	38087659	38087758	7808776	0	-	0.59596	(0.58,1]	chr22	818555	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	BAIAP2L2	ENSG00000128298.18	ENST00000332536.10:ENST00000681084.1:ENST00000381669.8:ENST00000428572.1:ENST00000679603.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.62403	4.8845	5.14497	0.0578275	0.00474658	0.154343	0.0413976
chr8	42302999	42303098	3808263	0	+	0.59596	(0.58,1]	chr8	366561	91	INTRON	INTRON	IKBKB	ENSG00000104365.16	ENST00000520810.6:ENST00000629753.2:ENST00000517890.5:ENST00000520835.7:ENST00000523105.5:ENST00000519735.5:ENST00000519733.5:ENST00000518679.5:ENST00000517917.5:ENST00000342222.6:ENST00000520201.5:ENST00000518647.5:ENST00000517388.5:ENST00000521661.5:ENST00000520655.5:ENST00000517812.5:ENST00000522147.4:ENST00000523517.5:ENST00000416505.7:ENST00000649612.3:ENST00000648136.2:ENST00000676525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.62403	4.8845	5.14497	0.0578275	0.00474658	0.154343	0.0413976
chr15	57447731	57447830	6115001	0	+	0.393939	(0.39,0.419]	chr15	601831	49	INTRON	INTRON	CGNL1	ENSG00000128849.11	ENST00000281282.6	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.39622	4.88397	5.37172	0.042449	0.0367885	0.149195	0.129052
chr19	1288395	1288494	7186888	0	+	0.707071	(0.58,1]	chr19	731132	17	INTRON	INTRON	EFNA2	ENSG00000099617.4	ENST00000215368.4	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.81862	4.88372	4.94882	0.0354433	0.0102696	0.127188	0.0678072
chr19	2333206	2333305	7189451	0	+	0.727273	(0.58,1]	chr19	731774	24	INTRON	INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.81862	4.88372	4.94882	0.0354433	0.0102696	0.127188	0.0678072
chr19	36605364	36605455	7248622	0	+	0.659341	(0.58,1]	chr19	743031	7	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ZNF382	ENSG00000161298.19	ENST00000423582.5:ENST00000292928.7:ENST00000460670.5:ENST00000460384.1:ENST00000463910.1:ENST00000439428.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.81862	4.88372	4.94882	0.0354433	0.0102696	0.127188	0.0678072
chr21	45452024	45452124	7630783	0	+	0.63	(0.58,1]	chr21	797656	462	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.81862	4.88372	4.94882	0.0354433	0.0102696	0.127188	0.0678072
chr7	1016126	1016226	3526384	0	-	0.66	(0.58,1]	chr7	340572	56	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.81862	4.88372	4.94882	0.0354433	0.0102696	0.127188	0.0678072
chr8	38770592	38770692	3802261	0	+	0.52	(0.485,0.523]	chr8	365828	128	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	119	2	3.25002	4.88372	6.51742	0.033374	2.15808e-4	0.124113	0.00477041
chr9	127877322	127877422	4412826	0	-	0.61	(0.58,1]	chr9	420604	3	SS5_PROX	SS5_PROX:INTRON	AK1:ENSG00000257524	ENSG00000106992.19:ENSG00000257524.6	ENST00000644144.2:ENST00000643029.1:ENST00000643338.1:ENST00000646171.1:ENST00000476274.7:ENST00000645007.1:ENST00000550992.1:ENST00000548587.1:ENST00000642314.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.81862	4.88372	4.94882	0.0354433	0.0102696	0.127188	0.0678072
chr9	133734998	133735096	4427933	0	-	0.622449	(0.58,1]	chr9	423136	4	INTRON	INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000427237.6:ENST00000298628.6	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.81862	4.88372	4.94882	0.0354433	0.0102696	0.127188	0.0678072
chr9	137775843	137775934	4266065	0	+	0.582418	(0.58,1]	chr9	407420	2	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000638071.1:ENST00000640639.1:ENST00000462942.3:ENST00000465566.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.81862	4.88372	4.94882	0.0354433	0.0102696	0.127188	0.0678072
chr16	75234699	75234788	6644454	0	-	0.606742	(0.58,1]	chr16	664407	4	SS5_PROX	SS5_PROX:INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000566982.1:ENST00000563038.5:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	92	2	4.20999	4.8834	5.55681	0.0126042	9.16802e-4	0.0761905	0.0133866
chr4	87116791	87116891	2080924	0	+	0.4	(0.39,0.419]	chr4	212261	11	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000395146.9:ENST00000674009.1:ENST00000544085.6:ENST00000307808.10:ENST00000503369.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	144	2	2.9811	4.88339	6.78568	0.0120015	0.00378521	0.0754623	0.0396337
chr1	93454001	93454100	185672	0	+	0.454545	(0.45,0.485]	chr1	20160	53	INTRON	INTRON	FNBP1L	ENSG00000137942.18	ENST00000271234.13:ENST00000260506.12:ENST00000370253.6	protein_coding	protein_coding	protein_coding	protein_coding	1	103	2	3.46316	4.8832699999999996	6.30338	0.00952494	0.00692617	0.0650078	0.0553898
chr14	37442020	37442120	5785539	0	+	0.39	(0.36,0.39]	chr14	566994	39	INTRON	INTRON	MIPOL1	ENSG00000151338.20	ENST00000694961.1:ENST00000396294.6:ENST00000537471.6:ENST00000554114.2:ENST00000695502.1:ENST00000684589.1:ENST00000327441.11:ENST00000694962.1:ENST00000539062.6:ENST00000556451.5:ENST00000694963.1:ENST00000555870.5:ENST00000694964.1:ENST00000694965.1:ENST00000695406.1:ENST00000695407.1:ENST00000695408.1:ENST00000694968.1:ENST00000694967.1:ENST00000694966.1:ENST00000694969.1:ENST00000694970.1:ENST00000694971.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.56926	4.883195	5.19713	0.0462258	0.031369	0.143138	0.127822
chr1	17677182	17677282	54983	0	+	0.5	(0.485,0.523]	chr1	5603	122	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	351	2	4.56021	4.883055	5.2059	8.88487e-4	1.28316e-4	0.0177608	0.00328964
chr10	103837116	103837216	4758476	0	-	0.39	(0.36,0.39]	chr10	454819	354	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	2	143	2	3.01029	4.8829649999999996	6.75564	0.0112005	0.00388535	0.071709	0.0401823
chr2	3269080	3269179	1080796	0	-	0.50505	(0.485,0.523]	chr2	117623	66	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	162	2	3.52105	4.882949999999999	6.24485	0.00665813	0.00140695	0.0540577	0.0180659
chr15	20441740	20441840	6202464	0	-	0.43	(0.419,0.45]	chr15	610287	7	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000424611.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	2	292	2	4.26314	4.882545	5.50195	0.0079416	5.33352e-5	0.0596361	0.00172258
chr11	71200319	71200419	5066306	0	-	0.41	(0.39,0.419]	chr11	492802	251	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000482659.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.56871	4.88225	5.19579	0.0469937	0.0315133	0.143232	0.127889
chr8	66668992	66669091	3836793	0	+	0.373737	(0.36,0.39]	chr8	368383	9	INTRON	INTRON	C8orf44	ENSG00000288596.2	ENST00000521113.1:ENST00000661636.1:ENST00000521889.5	lncRNA	lncRNA	lncRNA	lncRNA	1	127	2	3.65088	4.8820049999999995	6.11313	0.0201778	0.00107374	0.0973964	0.0148869
chr7	22336008	22336108	3549983	0	-	0.46	(0.45,0.485]	chr7	342998	176	INTRON	INTRON	RAPGEF5	ENSG00000136237.19	ENST00000665637.1:ENST00000344041.10:ENST00000405243.1:ENST00000471484.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.50852	4.88181	5.2551	0.0373953	0.0302873	0.130656	0.126768
chr13	93285706	93285806	5618369	0	+	0.29	[0,0.29]	chr13	553052	577	INTRON	INTRON	GPC6	ENSG00000183098.11	ENST00000377047.9	protein_coding	protein_coding	protein_coding	protein_coding	2	153	2	4.37467	4.881735	5.3888	0.0183035	1.87924e-4	0.0922556	0.00434308
chr2	120277414	120277514	887946	0	+	0.45	(0.419,0.45]	chr2	100428	233	INTRON	INTRON	RALB	ENSG00000144118.14	ENST00000447591.5:ENST00000420510.5:ENST00000431732.5:ENST00000272519.10:ENST00000631312.2:ENST00000470417.1:ENST00000412383.5:ENST00000449649.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	109	2	4.24272	4.881725	5.52073	0.0327198	0.00171002	0.122543	0.0206538
chr7	117011094	117011193	3452390	0	+	0.434343	(0.419,0.45]	chr7	334380	427	INTRON	INTRON	ST7:ENSG00000288635:ST7-OT4	ENSG00000004866.22:ENSG00000288635.1:ENSG00000214188.9	ENST00000393446.6:ENST00000265437.9:ENST00000393451.7:ENST00000438863.5:ENST00000393449.5:ENST00000443979.5:ENST00000323984.8:ENST00000417919.5:ENST00000446490.5:ENST00000421345.5:ENST00000471110.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	1	109	2	4.24272	4.881725	5.52073	0.0327198	0.00171002	0.122543	0.0206538
chr16	29268314	29268414	6433520	0	+	0.64	(0.58,1]	chr16	636745	162	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	1	102	2	3.20215	4.881355	6.56056	0.0136092	0.00171861	0.0811697	0.025659
chr10	18574055	18574155	4642469	0	-	0.48	(0.45,0.485]	chr10	443321	217	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.41963	4.88132	5.34301	0.0355247	0.0328801	0.137983	0.122593
chr22	28326934	28327034	7778299	0	-	0.42	(0.419,0.45]	chr22	815737	199	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7:ENST00000490475.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	105	2	3.59354	4.88083	6.16812	0.0123115	0.00820853	0.0756356	0.0592025
chr14	89270952	89271052	6026808	0	-	0.52	(0.485,0.523]	chr14	591436	65	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	348	2	4.61921	4.880775	5.14234	0.00101118	1.06938e-4	0.0191342	0.00288045
chr22	31624531	31624623	7788310	0	-	0.48913	(0.485,0.523]	chr22	817184	3	INTRON	INTRON	PISD	ENSG00000241878.12	ENST00000460723.5:ENST00000439502.7:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5:ENST00000474017.5:ENST00000478893.5:ENST00000491342.1:ENST00000422020.5:ENST00000442379.1:ENST00000429683.1:ENST00000431201.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	98	2	3.7132	4.880775	6.04835	0.00941539	0.00492265	0.0653252	0.0423296
chr20	62921958	62922057	7585554	0	-	0.222222	[0,0.29]	chr20	792927	72	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8	protein_coding	protein_coding	protein_coding	protein_coding	1	100	2	4.37271	4.880755	5.3888	0.0183035	7.40257e-4	0.0922556	0.0115221
chr2	131067663	131067763	1271884	0	-	0.52	(0.485,0.523]	chr2	137243	116	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	2	171	2	3.45275	4.880575	6.3084	0.0113948	3.92049e-4	0.0723462	0.00735595
chr6	36679795	36679884	2906387	0	+	0.730337	(0.58,1]	chr6	285235	5	INTRON	INTRON	CDKN1A	ENSG00000124762.14	ENST00000615513.4:ENST00000448526.6:ENST00000459970.1:ENST00000405375.5:ENST00000244741.10:ENST00000373711.3:ENST00000478800.1:ENST00000462537.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	226	2	4.35371	4.88037	5.40703	0.00298077	1.89666e-5	0.0347875	8.10733e-4
chr8	133296129	133296212	4084288	0	-	0.590361	(0.58,1]	chr8	388363	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	413	2	4.16727	4.880255	5.59324	0.0014734	6.22927e-4	0.0185589	0.0146602
chr10	127427705	127427805	4612225	0	+	0.54	(0.523,0.58]	chr10	440909	13	INTRON	INTRON	DOCK1	ENSG00000150760.13	ENST00000280333.9:ENST00000623213.2	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.50593	4.87998	5.25403	0.094303	0.00573579	0.188571	0.0467736
chr11	45881204	45881302	4850365	0	+	0.571429	(0.523,0.58]	chr11	463885	4	UTR3	UTR3:EXON_MRNA	CRY2	ENSG00000121671.12	ENST00000417225.6:ENST00000616623.4:ENST00000443527.6:ENST00000616080.2	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.50593	4.87998	5.25403	0.094303	0.00573579	0.188571	0.0467736
chr7	214464	214564	3305799	0	+	0.58	(0.523,0.58]	chr7	320161	51	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.50593	4.87998	5.25403	0.094303	0.00573579	0.188571	0.0467736
chr10	32940623	32940723	4664046	0	-	0.4	(0.39,0.419]	chr10	445320	15	INTRON	INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000474568.6:ENST00000676460.1:ENST00000475184.6:ENST00000484088.5:ENST00000480226.5:ENST00000534049.5:ENST00000528877.5:ENST00000414670.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	125	2	3.25813	4.87968	6.50123	0.0377191	3.91245e-4	0.131324	0.00735482
chr12	93385662	93385761	5290344	0	+	0.434343	(0.419,0.45]	chr12	514887	1	INTRON	INTRON	NUDT4	ENSG00000173598.14	ENST00000337179.9:ENST00000415493.7:ENST00000549992.5:ENST00000550056.5:ENST00000547014.5:ENST00000548662.5:ENST00000546925.1	protein_coding	protein_coding	protein_coding	protein_coding	1	128	2	3.16321	4.87934	6.59547	0.0455634	3.45753e-4	0.142336	0.00672667
chr16	16124193	16124288	6407774	0	+	0.357895	(0.33,0.36]	chr16	633164	17	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000676806.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.64131	4.878925	5.11654	0.0867669	0.00998589	0.182221	0.0667545
chr16	28727543	28727610	6431211	0	+	0.358209	(0.33,0.36]	chr16	636439	1	SS5_PROX	SS5_PROX:INTRON	EIF3C	ENSG00000184110.15	ENST00000566501.5:ENST00000395587.5:ENST00000331666.11:ENST00000564243.5:ENST00000566866.5:ENST00000565932.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.64131	4.878925	5.11654	0.0867669	0.00998589	0.182221	0.0667545
chr4	25410191	25410291	2020325	0	+	0.36	(0.33,0.36]	chr4	206593	4	SS5_PROX	SS5_PROX:INTRON	ANAPC4	ENSG00000053900.11	ENST00000315368.8:ENST00000510092.5:ENST00000505842.5:ENST00000504256.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.64131	4.878925	5.11654	0.0867669	0.00998589	0.182221	0.0667545
chr12	113686232	113686332	5508147	0	-	0.56	(0.523,0.58]	chr12	542404	61	INTRON	INTRON	LINC01234	ENSG00000249550.8	ENST00000661760.1:ENST00000550905.5	lncRNA	lncRNA	lncRNA	lncRNA	0	45	2	4.68785	4.87871	5.06957	0.0448011	0.0194172	0.140478	0.0994526
chr1	91780716	91780815	526761	0	-	0.50505	(0.485,0.523]	chr1	61906	94	INTRON	INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.50634	4.87841	5.25048	0.0939553	0.0059614	0.188571	0.0479866
chr10	12103465	12103564	4443504	0	+	0.494949	(0.485,0.523]	chr10	425753	19	INTRON	INTRON	DHTKD1	ENSG00000181192.12	ENST00000263035.9:ENST00000448829.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.50634	4.87841	5.25048	0.0939553	0.0059614	0.188571	0.0479866
chr5	98869569	98869661	2732793	0	-	0.48913	(0.485,0.523]	chr5	268505	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7:ENST00000514344.5:ENST00000511067.2:ENST00000508756.2:ENST00000414220.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.50634	4.87841	5.25048	0.0939553	0.0059614	0.188571	0.0479866
chr6	170383890	170383990	3076415	0	+	0.52	(0.485,0.523]	chr6	299174	252	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.50634	4.87841	5.25048	0.0939553	0.0059614	0.188571	0.0479866
chr10	119894944	119895044	4597227	0	+	0.34	(0.33,0.36]	chr10	439450	16	INTRON	INTRON	SEC23IP	ENSG00000107651.14	ENST00000369075.8:ENST00000470478.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.80497	4.878299999999999	4.95163	0.0583482	0.0188359	0.155373	0.0980631
chr17	43572697	43572797	6739292	0	+	0.35	(0.33,0.36]	chr17	678633	275	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	45	2	4.80497	4.878299999999999	4.95163	0.0583482	0.0188359	0.155373	0.0980631
chr3	30636846	30636946	1433395	0	+	0.49	(0.485,0.523]	chr3	153006	36	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4:ENST00000673250.1:ENST00000672866.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	157	2	3.16553	4.87793	6.59033	0.00373279	0.00353829	0.0381878	0.0351464
chr2	226741848	226741948	1379294	0	-	0.31	(0.29,0.33]	chr2	147292	52	INTRON	INTRON	IRS1	ENSG00000169047.6	ENST00000305123.6	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.67908	4.87792	5.07676	0.0412683	0.0209202	0.136301	0.102931
chr10	18558466	18558566	4642313	0	-	0.37	(0.36,0.39]	chr10	443321	61	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.30212	4.87786	5.4536	0.0494303	0.0321864	0.160725	0.121593
chr3	13023395	13023495	1689370	0	-	0.62	(0.58,1]	chr3	176542	9	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	1	90	2	3.9863	4.87782	5.76934	0.00849371	0.0017591	0.0617717	0.0211077
chr7	38756246	38756337	3579829	0	-	0.428571	(0.419,0.45]	chr7	345078	10	INTRON	INTRON	VPS41	ENSG00000006715.16	ENST00000310301.9:ENST00000395969.6	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.47684	4.87776	5.27868	0.0457732	0.0389508	0.142578	0.142336
chr7	135928737	135928836	3718949	0	-	0.333333	(0.33,0.36]	chr7	357211	21	UTR3	UTR3:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4	protein_coding	protein_coding	protein_coding	protein_coding	1	101	2	3.94543	4.8776600000000006	5.80989	0.0164265	0.0031765	0.0877406	0.0316024
chr17	40148688	40148787	6732941	0	+	0.454545	(0.45,0.485]	chr17	677136	67	INTRON	INTRON	CASC3	ENSG00000108349.17	ENST00000418132.7:ENST00000264645.12:ENST00000581849.1:ENST00000584997.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.74641	4.8774999999999995	5.00859	0.052901	0.0193126	0.14912	0.0994526
chr19	16458815	16458915	7344554	0	-	0.48	(0.45,0.485]	chr19	760800	162	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5:ENST00000597937.5:ENST00000593760.5:ENST00000596037.5:ENST00000597559.5:ENST00000602151.1:ENST00000595845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	4.74641	4.8774999999999995	5.00859	0.052901	0.0193126	0.14912	0.0994526
chr20	34565157	34565257	7547079	0	-	0.47	(0.45,0.485]	chr20	787854	38	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.74641	4.8774999999999995	5.00859	0.052901	0.0193126	0.14912	0.0994526
chr7	74528138	74528237	3392115	0	+	0.464646	(0.45,0.485]	chr7	327389	36	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6:ENST00000476977.5:ENST00000489094.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.74641	4.8774999999999995	5.00859	0.052901	0.0193126	0.14912	0.0994526
chr5	62452632	62452732	2429917	0	+	0.42	(0.419,0.45]	chr5	242137	3	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7:ENST00000506905.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.7145	4.877465	5.04043	0.0625897	0.0256236	0.160305	0.115966
chr7	29203882	29203982	3334382	0	+	0.3	(0.29,0.33]	chr7	322843	55	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5:ENST00000222792.11:ENST00000409350.5:ENST00000409964.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	159	2	2.97142	4.877454999999999	6.78349	0.00635547	0.00215044	0.0501889	0.02913
chr16	81563976	81564076	6508933	0	+	0.51	(0.485,0.523]	chr16	645911	681	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.68434	4.877165	5.06999	0.0445854	0.0200045	0.140478	0.100864
chr16	85588431	85588531	6518957	0	+	0.52	(0.485,0.523]	chr16	646396	317	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.68434	4.877165	5.06999	0.0445854	0.0200045	0.140478	0.100864
chr17	15446845	15446944	6859901	0	-	0.383838	(0.36,0.39]	chr17	695058	62	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000519354.1:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	103	2	3.98537	4.87715	5.76893	0.0200694	0.00307113	0.0971995	0.0309223
chr17	81074871	81074970	6813769	0	+	0.525253	(0.523,0.58]	chr17	688114	107	INTRON	INTRON	BAIAP2	ENSG00000175866.16	ENST00000321280.11:ENST00000576470.5:ENST00000575750.5:ENST00000428708.7:ENST00000572329.5:ENST00000575989.5:ENST00000570913.5:ENST00000575712.5:ENST00000575245.5:ENST00000321300.10:ENST00000435091.7:ENST00000573894.5:ENST00000571530.5:ENST00000572918.5:ENST00000573017.5:ENST00000575958.5:ENST00000573659.5:ENST00000572073.5:ENST00000573677.5:ENST00000574804.5:ENST00000576364.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	97	2	3.78755	4.877145	5.96674	0.0109075	0.00401039	0.0707085	0.0371192
chr16	84735282	84735380	6514182	0	+	0.418367	(0.39,0.419]	chr16	646283	14	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	138	2	3.29893	4.877135	6.45534	0.00671435	0.00567902	0.0541693	0.0466642
chr5	73783238	73783337	2453266	0	+	0.454545	(0.45,0.485]	chr5	244950	21	INTRON	INTRON	ARHGEF28	ENSG00000214944.10	ENST00000545377.5:ENST00000296794.10:ENST00000513042.7:ENST00000426542.6:ENST00000437974.5	protein_coding	protein_coding	protein_coding	protein_coding	1	99	2	3.82378	4.87706	5.93034	0.0130794	0.0039984	0.0782396	0.0370532
chr21	43726656	43726755	7623860	0	+	0.50505	(0.485,0.523]	chr21	796696	29	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000438837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	132	2	3.21901	4.87704	6.53507	0.00573866	0.00392199	0.0467925	0.0404814
chr16	32771894	32771993	6442266	0	+	0.484848	(0.45,0.485]	chr16	638922	4	INTRON	INTRON	HERC2P5	ENSG00000260644.6	ENST00000562687.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	0	46	2	4.59225	4.87687	5.16149	0.0427653	0.0259502	0.13762	0.116361
chr6	111568462	111568561	2987955	0	+	0.484848	(0.45,0.485]	chr6	292725	28	INTRON	INTRON	TRAF3IP2-AS1	ENSG00000231889.8	ENST00000449449.7:ENST00000685477.1:ENST00000687951.1:ENST00000438298.7:ENST00000442928.6:ENST00000532353.1:ENST00000456352.2:ENST00000440395.1:ENST00000606892.1	lncRNA	lncRNA	lncRNA	lncRNA	0	46	2	4.59225	4.87687	5.16149	0.0427653	0.0259502	0.13762	0.116361
chr8	67337563	67337663	3992177	0	-	0.47	(0.45,0.485]	chr8	382089	347	INTRON	INTRON	ARFGEF1	ENSG00000066777.9	ENST00000262215.8:ENST00000519436.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.59225	4.87687	5.16149	0.0427653	0.0259502	0.13762	0.116361
chr16	50620102	50620202	6452129	0	+	0.49	(0.485,0.523]	chr16	639912	41	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	1	118	2	3.30265	4.87685	6.45105	0.0306642	2.61322e-4	0.119264	0.00551565
chr19	7081159	7081259	7197129	0	+	0.39	(0.36,0.39]	chr19	733466	4	SS3_PROX	SS3_PROX:INTRON	ZNF557	ENSG00000130544.12	ENST00000252840.11:ENST00000414706.2	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.7639	4.876659999999999	4.98942	0.0811309	0.0141427	0.177951	0.0833845
chr2	200332767	200332867	986218	0	+	0.33	(0.29,0.33]	chr2	108291	29	INTRON	INTRON	SPATS2L	ENSG00000196141.14	ENST00000439084.5:ENST00000409718.5:ENST00000358677.9:ENST00000409988.7:ENST00000409385.5:ENST00000439395.5:ENST00000444012.5:ENST00000451764.6:ENST00000360760.9:ENST00000423749.5:ENST00000457757.5:ENST00000471601.5:ENST00000428692.5:ENST00000453663.5:ENST00000409140.8:ENST00000459656.5:ENST00000471533.5:ENST00000409397.6:ENST00000619961.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	255	2	4.49878	4.8766	5.25442	0.00333398	6.64402e-5	0.0368376	0.00202291
chr10	42826275	42826374	4481948	0	+	0.363636	(0.36,0.39]	chr10	428486	21	INTRON	INTRON	BMS1	ENSG00000165733.8	ENST00000374518.6	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.82572	4.876535	4.92735	0.0751666	0.0160072	0.172839	0.0894586
chr7	55068339	55068438	3372039	0	+	0.363636	(0.36,0.39]	chr7	325289	244	INTRON	INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000463948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.82572	4.876535	4.92735	0.0751666	0.0160072	0.172839	0.0894586
chr17	13016232	13016332	6856161	0	-	0.45	(0.419,0.45]	chr17	694903	4	SS3_PROX	SS3_PROX:INTRON	ELAC2	ENSG00000006744.19	ENST00000338034.9:ENST00000484122.5:ENST00000395962.6:ENST00000426905.7:ENST00000609345.1:ENST00000609101.5:ENST00000580504.5:ENST00000581499.6:ENST00000609757.5:ENST00000583371.5:ENST00000578071.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	114	2	4.43095	4.87645	5.32195	0.0431627	0.00105051	0.138403	0.0146865
chr1	1023558	1023658	950	0	+	0.62	(0.58,1]	chr1	166	7	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.49116	4.87627	5.26138	0.021217	0.0207449	0.102713	0.0996078
chr10	79108225	79108325	4532437	0	+	0.63	(0.58,1]	chr10	432420	386	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.49116	4.87627	5.26138	0.021217	0.0207449	0.102713	0.0996078
chr3	39151261	39151360	1740002	0	-	0.59596	(0.58,1]	chr3	180188	42	INTRON	INTRON	CSRNP1	ENSG00000144655.15	ENST00000273153.10:ENST00000514182.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.49116	4.87627	5.26138	0.021217	0.0207449	0.102713	0.0996078
chr6	43782577	43782675	2921045	0	+	0.581633	(0.58,1]	chr6	287445	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	VEGFA	ENSG00000112715.26	ENST00000672860.3:ENST00000372067.8:ENST00000425836.8:ENST00000372064.9:ENST00000482630.7:ENST00000372055.9:ENST00000413642.8:ENST00000324450.11:ENST00000417285.7:ENST00000372077.8:ENST00000519767.5:ENST00000520948.5:ENST00000523950.5:ENST00000523873.5:ENST00000518824.5:ENST00000457104.6:ENST00000518689.5:ENST00000523125.5:ENST00000230480.10:ENST00000480614.1:ENST00000520265.1:ENST00000497139.5:ENST00000493786.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.49116	4.87627	5.26138	0.021217	0.0207449	0.102713	0.0996078
chr7	47380212	47380312	3587594	0	-	0.67	(0.58,1]	chr7	346036	102	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.49116	4.87627	5.26138	0.021217	0.0207449	0.102713	0.0996078
chr1	243480545	243480645	370440	0	+	0.57	(0.523,0.58]	chr1	41881	43	INTRON	INTRON	SDCCAG8	ENSG00000054282.16	ENST00000366541.8:ENST00000435549.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.23973	4.8761	5.51247	0.0444247	0.0230387	0.153511	0.102982
chr9	133917660	133917760	4429577	0	-	0.55	(0.523,0.58]	chr9	423310	559	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	50	2	4.23973	4.8761	5.51247	0.0444247	0.0230387	0.153511	0.102982
chr16	85390535	85390635	6516976	0	+	0.45	(0.419,0.45]	chr16	646391	312	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.38804	4.875995	5.36395	0.0451818	0.0407485	0.154539	0.135868
chr16	22443629	22443729	6422238	0	+	0.26	[0,0.29]	chr16	635236	55	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000446662.5:ENST00000381231.5:ENST00000309865.11:ENST00000691795.1:ENST00000308347.10:ENST00000687936.1:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	323	2	4.33395	4.8757850000000005	5.41762	0.00126744	2.93658e-5	0.0216912	0.00110779
chr16	87745706	87745805	6656540	0	-	0.616162	(0.58,1]	chr16	665900	28	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.54927	4.87575	5.20223	0.0643046	0.00411607	0.161669	0.0374453
chr17	957205	957305	6826407	0	-	0.59	(0.58,1]	chr17	690074	239	INTRON	INTRON	NXN	ENSG00000167693.17	ENST00000336868.8:ENST00000575171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.54927	4.87575	5.20223	0.0643046	0.00411607	0.161669	0.0374453
chr3	13200525	13200625	1691147	0	-	0.6	(0.58,1]	chr3	176566	360	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.54927	4.87575	5.20223	0.0643046	0.00411607	0.161669	0.0374453
chr7	47350539	47350639	3587296	0	-	0.62	(0.58,1]	chr7	346030	38	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.54927	4.87575	5.20223	0.0643046	0.00411607	0.161669	0.0374453
chr17	43539979	43540079	6909568	0	-	0.4	(0.39,0.419]	chr17	703271	31	INTRON	INTRON	ETV4	ENSG00000175832.13	ENST00000538265.5:ENST00000319349.10:ENST00000393664.6:ENST00000545954.5:ENST00000545089.5:ENST00000591713.5:ENST00000590236.5:ENST00000585508.5:ENST00000587151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.76257	4.875715	4.98886	0.0822354	0.0142222	0.179396	0.0833845
chr3	131006622	131006721	1570241	0	+	0.40404	(0.39,0.419]	chr3	166230	36	INTRON	INTRON	ATP2C1	ENSG00000017260.20	ENST00000504381.5:ENST00000507488.6:ENST00000533801.6:ENST00000513801.5:ENST00000328560.12:ENST00000422190.6:ENST00000359644.7:ENST00000504612.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.76257	4.875715	4.98886	0.0822354	0.0142222	0.179396	0.0833845
chrX	2880159	2880257	7831337	0	+	0.408163	(0.39,0.419]	chrX	822236	25	INTRON	INTRON	GYG2	ENSG00000056998.20	ENST00000381163.7:ENST00000381161.5:ENST00000398806.8:ENST00000353656.10:ENST00000639373.1:ENST00000381157.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.76257	4.875715	4.98886	0.0822354	0.0142222	0.179396	0.0833845
chr2	54578677	54578777	799501	0	+	0.41	(0.39,0.419]	chr2	90800	194	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7:ENST00000333896.5	protein_coding	protein_coding	protein_coding	protein_coding	4	451	2	4.49647	4.875695	5.25492	0.00117639	1.18453e-4	0.0207381	0.00311099
chr16	16037698	16037797	6406886	0	+	0.555556	(0.523,0.58]	chr16	633041	7	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.78384	4.875489999999999	4.96714	0.0663135	0.0108948	0.162385	0.0706366
chr17	38403399	38403499	6729060	0	+	0.58	(0.523,0.58]	chr17	676274	40	UTR3	UTR3:EXON_MRNA	SOCS7	ENSG00000274211.6	ENST00000612932.6:ENST00000665913.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.78384	4.875489999999999	4.96714	0.0663135	0.0108948	0.162385	0.0706366
chr22	46617285	46617385	7744348	0	+	0.56	(0.523,0.58]	chr22	812034	396	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000447351.5:ENST00000431155.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.78384	4.875489999999999	4.96714	0.0663135	0.0108948	0.162385	0.0706366
chr7	1068786	1068885	3526915	0	-	0.525253	(0.523,0.58]	chr7	340585	136	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.78384	4.875489999999999	4.96714	0.0663135	0.0108948	0.162385	0.0706366
chr11	70778257	70778356	5062064	0	-	0.515152	(0.485,0.523]	chr11	492701	604	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	100	2	3.5054	4.875125	6.24485	0.00816275	0.00665813	0.0589533	0.0540577
chr17	82909507	82909607	6819990	0	+	0.65	(0.58,1]	chr17	689430	2	SS5_PROX	SS5_PROX:INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	144	2	3.17001	4.87474	6.57947	0.00272556	0.00165065	0.028553	0.0250898
chr9	136008726	136008826	4432159	0	-	0.63	(0.58,1]	chr9	423617	23	UTR3	UTR3:EXON_MRNA	NACC2	ENSG00000148411.8	ENST00000277554.4:ENST00000371753.5	protein_coding	protein_coding	protein_coding	protein_coding	3	144	2	3.17001	4.87474	6.57947	0.00272556	0.00165065	0.028553	0.0250898
chr11	68348543	68348643	4882443	0	+	0.61	(0.58,1]	chr11	470547	3	SS5_PROX	SS5_PROX:INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.74346	4.874655	5.00585	0.0323732	0.0121457	0.121593	0.0754623
chr11	70762768	70762868	5061909	0	-	0.62	(0.58,1]	chr11	492701	449	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.74346	4.874655	5.00585	0.0323732	0.0121457	0.121593	0.0754623
chr11	70813067	70813167	5062414	0	-	0.62	(0.58,1]	chr11	492713	55	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.74346	4.874655	5.00585	0.0323732	0.0121457	0.121593	0.0754623
chr12	132545610	132545710	5353072	0	+	0.65	(0.58,1]	chr12	523670	173	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.74346	4.874655	5.00585	0.0323732	0.0121457	0.121593	0.0754623
chr14	101824753	101824837	5914045	0	+	0.654762	(0.58,1]	chr14	578219	2	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000328724.9:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556493.1:ENST00000553842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.74346	4.874655	5.00585	0.0323732	0.0121457	0.121593	0.0754623
chr3	13207324	13207424	1691215	0	-	0.66	(0.58,1]	chr3	176566	428	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.74346	4.874655	5.00585	0.0323732	0.0121457	0.121593	0.0754623
chr3	125357546	125357635	1902601	0	-	0.707865	(0.58,1]	chr3	193000	4	SS5_PROX	SS5_PROX:INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000465763.5:ENST00000471196.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.74346	4.874655	5.00585	0.0323732	0.0121457	0.121593	0.0754623
chr4	1244495	1244594	2180125	0	-	0.666667	(0.58,1]	chr4	220970	26	INTRON	INTRON	CTBP1	ENSG00000159692.16	ENST00000382952.8:ENST00000290921.10:ENST00000506180.5:ENST00000514210.5:ENST00000514495.1:ENST00000515399.5:ENST00000513420.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.74346	4.874655	5.00585	0.0323732	0.0121457	0.121593	0.0754623
chr19	8248034	8248133	7200364	0	+	0.525253	(0.523,0.58]	chr19	734198	62	INTRON	INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	121	2	3.74217	4.87459	6.00701	0.0146653	8.61362e-4	0.0826843	0.0127848
chr10	103822435	103822535	4758329	0	-	0.54	(0.523,0.58]	chr10	454819	207	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	2	142	2	2.82229	4.87456	6.92683	0.014802	0.00188118	0.0847481	0.0270971
chr2	27344473	27344572	1111891	0	-	0.383838	(0.36,0.39]	chr2	121479	5	INTRON	INTRON	GTF3C2	ENSG00000115207.15	ENST00000359541.6:ENST00000264720.8:ENST00000457748.1:ENST00000423998.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.64834	4.87437	5.1004	0.0526991	0.0272056	0.14912	0.119337
chr14	35745328	35745426	5960760	0	-	0.387755	(0.36,0.39]	chr14	584322	24	INTRON	INTRON	RALGAPA1	ENSG00000174373.17	ENST00000307138.10:ENST00000389698.7:ENST00000680220.1:ENST00000554259.6:ENST00000637992.1:ENST00000382366.7:ENST00000553892.2:ENST00000554652.5:ENST00000554704.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	168	2	3.37233	4.874345	6.37636	0.00749622	0.0027115	0.0576451	0.0285293
chr10	21883238	21883338	4644664	0	-	0.42	(0.419,0.45]	chr10	443436	4	INTRON	INTRON	DNAJC1	ENSG00000136770.11	ENST00000376980.8	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.56048	4.87426	5.18804	0.051668	0.0337332	0.148503	0.133139
chr5	80442922	80443022	2465552	0	+	0.42	(0.419,0.45]	chr5	246298	4	SS3_PROX	SS3_PROX:INTRON	ZFYVE16	ENSG00000039319.17	ENST00000338008.9:ENST00000510158.5:ENST00000512558.5:ENST00000505560.5:ENST00000511050.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	47	2	4.56048	4.87426	5.18804	0.051668	0.0337332	0.148503	0.133139
chr11	115481795	115481895	5130908	0	-	0.54	(0.523,0.58]	chr11	498122	356	INTRON	INTRON	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000541434.5:ENST00000543249.1:ENST00000540951.1:ENST00000536781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.71922	4.874245	5.02927	0.0721601	0.0095202	0.168159	0.0650078
chr13	113497183	113497277	5658242	0	+	0.531915	(0.523,0.58]	chr13	555678	8	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000473287.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.71922	4.874245	5.02927	0.0721601	0.0095202	0.168159	0.0650078
chr17	82146469	82146569	6987838	0	-	0.53	(0.523,0.58]	chr17	714577	107	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000419322.6:ENST00000392346.6:ENST00000582040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.71922	4.874245	5.02927	0.0721601	0.0095202	0.168159	0.0650078
chr1	3471623	3471657	5826	0	+	0.705882	(0.58,1]	chr1	1231	1	UTR5	UTR5:EXON_MRNA:INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5:ENST00000464620.1:ENST00000418137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.3962	4.87417	5.35214	0.0250928	0.0181452	0.114418	0.0921579
chr1	156089870	156089970	250777	0	+	0.62	(0.58,1]	chr1	29429	63	INTRON	INTRON	LMNA	ENSG00000160789.24	ENST00000502751.5:ENST00000368301.6:ENST00000470835.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.3962	4.87417	5.35214	0.0250928	0.0181452	0.114418	0.0921579
chr11	70801934	70802034	5062302	0	-	0.6	(0.58,1]	chr11	492707	30	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5:ENST00000460048.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.3962	4.87417	5.35214	0.0250928	0.0181452	0.114418	0.0921579
chr20	340919	341019	7511852	0	-	0.58	(0.523,0.58]	chr20	783986	158	INTRON	INTRON	NRSN2-AS1	ENSG00000225377.6	ENST00000442637.2:ENST00000662580.1	lncRNA	lncRNA	lncRNA	lncRNA	0	44	2	4.84569	4.8739550000000005	4.90222	0.0610722	0.0125132	0.158506	0.0765738
chr6	166332898	166332997	3301402	0	-	0.565657	(0.523,0.58]	chr6	319660	11	INTRON	INTRON	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000478705.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.84569	4.8739550000000005	4.90222	0.0610722	0.0125132	0.158506	0.0765738
chr7	756381	756481	3306577	0	+	0.58	(0.523,0.58]	chr7	320231	2	SS3_PROX	SS3_PROX:INTRON	DNAAF5	ENSG00000164818.16	ENST00000297440.11:ENST00000437419.5:ENST00000440747.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.84569	4.8739550000000005	4.90222	0.0610722	0.0125132	0.158506	0.0765738
chr7	26863962	26864062	3558402	0	-	0.5	(0.485,0.523]	chr7	343686	2	SS5_PROX	SS5_PROX:INTRON	SKAP2	ENSG00000005020.13	ENST00000345317.7:ENST00000432747.1:ENST00000497511.5:ENST00000481204.5:ENST00000487720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.78426	4.8739349999999995	4.96361	0.0660335	0.0112713	0.162385	0.071709
chr12	12990113	12990212	5375496	0	-	0.373737	(0.36,0.39]	chr12	527156	3	INTRON	INTRON	HEBP1	ENSG00000013583.10	ENST00000014930.9:ENST00000647702.1:ENST00000536942.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.86249	4.8737449999999995	4.885	0.0697729	0.0181775	0.167185	0.0955836
chr4	83277954	83278053	2270553	0	-	0.373737	(0.36,0.39]	chr4	228760	40	INTRON	INTRON	COQ2	ENSG00000173085.15	ENST00000503391.5:ENST00000647002.2:ENST00000503915.5:ENST00000311469.9:ENST00000311461.7:ENST00000514935.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.86249	4.8737449999999995	4.885	0.0697729	0.0181775	0.167185	0.0955836
chr8	22063937	22064036	3769011	0	+	0.373737	(0.36,0.39]	chr8	362410	41	INTRON	INTRON	DMTN	ENSG00000158856.19	ENST00000522148.5:ENST00000523300.5:ENST00000519959.1:ENST00000381470.7:ENST00000519850.5:ENST00000432128.6:ENST00000443491.6:ENST00000517305.5:ENST00000518816.5:ENST00000517600.5:ENST00000523782.6:ENST00000520856.1:ENST00000523623.5:ENST00000358242.6:ENST00000520174.5:ENST00000517804.5:ENST00000265800.9:ENST00000517418.5:ENST00000523266.5:ENST00000519907.5:ENST00000415253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	113	2	3.14223	4.873675	6.60512	0.0209989	0.00506051	0.103249	0.0465519
chr15	68808677	68808776	6312040	0	-	0.494949	(0.485,0.523]	chr15	622245	64	INTRON	INTRON	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6:ENST00000267918.9:ENST00000560303.1:ENST00000495420.5:ENST00000495764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	97	2	3.86607	4.87361	5.88115	0.012541	0.00334297	0.0761905	0.0327065
chr11	17368466	17368566	4810816	0	+	0.5	(0.485,0.523]	chr11	461035	2	SS3_PROX	SS3_PROX:INTRON	NCR3LG1	ENSG00000188211.9	ENST00000338965.9:ENST00000530403.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	97	2	3.83677	4.873585	5.9104	0.0119344	0.00360381	0.0741726	0.0342681
chr10	35404961	35405061	4476359	0	+	0.4	(0.39,0.419]	chr10	428113	97	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.64779	4.873424999999999	5.09906	0.0535378	0.0273358	0.150319	0.119337
chr13	19997491	19997591	5543186	0	+	0.33	(0.29,0.33]	chr13	547206	32	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382881.7:ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000620447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.72635	4.873385	5.02042	0.0672935	0.0103902	0.163263	0.0682598
chr14	61036858	61036958	5836251	0	+	0.3	(0.29,0.33]	chr14	570819	4	SS3_PROX	SS3_PROX:INTRON	SLC38A6	ENSG00000139974.16	ENST00000354886.6:ENST00000525723.6:ENST00000267488.9:ENST00000491344.7:ENST00000451406.5:ENST00000527591.5:ENST00000529345.6:ENST00000524402.6:ENST00000526105.5:ENST00000533744.6:ENST00000528350.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.72635	4.873385	5.02042	0.0672935	0.0103902	0.163263	0.0682598
chr16	84777998	84778097	6514624	0	+	0.292929	(0.29,0.33]	chr16	646345	24	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569925.1:ENST00000567526.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.72635	4.873385	5.02042	0.0672935	0.0103902	0.163263	0.0682598
chr20	16354435	16354534	7529504	0	-	0.323232	(0.29,0.33]	chr20	785775	181	INTRON	INTRON	KIF16B	ENSG00000089177.19	ENST00000354981.7:ENST00000636835.1:ENST00000355755.7	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.72635	4.873385	5.02042	0.0672935	0.0103902	0.163263	0.0682598
chr2	175149767	175149866	1322244	0	-	0.393939	(0.39,0.419]	chr2	141214	14	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000435231.6:ENST00000437522.5:ENST00000409833.5:ENST00000413123.5:ENST00000445349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.69798	4.87317	5.04836	0.088901	0.0126072	0.183874	0.0768036
chr12	132528088	132528188	5352896	0	+	0.62	(0.58,1]	chr12	523669	1	SS5_PROX	SS5_PROX:INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	93	2	3.52722	4.87287	6.21852	0.00611467	0.00350812	0.0489549	0.0379357
chr3	126345486	126345585	1907123	0	-	0.464646	(0.45,0.485]	chr3	193539	12	INTRON	INTRON	KLF15	ENSG00000163884.4	ENST00000296233.4	protein_coding	protein_coding	protein_coding	protein_coding	1	124	2	3.00299	4.872815	6.74264	0.0512051	1.37232e-4	0.148503	0.00346319
chr12	89677902	89678002	5470530	0	-	0.4	(0.39,0.419]	chr12	537853	214	INTRON	INTRON	ATP2B1	ENSG00000070961.16	ENST00000428670.8:ENST00000551310.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.86193	4.872795	4.88366	0.0707789	0.0182739	0.168159	0.0958352
chr7	17861428	17861528	3546817	0	-	0.41	(0.39,0.419]	chr7	342732	101	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.86193	4.872795	4.88366	0.0707789	0.0182739	0.168159	0.0958352
chr5	168371933	168372033	2588521	0	+	0.5	(0.485,0.523]	chr5	256656	4	SS5_PROX	SS5_PROX:INTRON	WWC1	ENSG00000113645.15	ENST00000265293.9:ENST00000521089.5:ENST00000523043.5:ENST00000519859.1:ENST00000393895.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.71964	4.872685000000001	5.02573	0.0718646	0.00985879	0.168159	0.0664239
chr6	169622251	169622351	3304079	0	-	0.52	(0.485,0.523]	chr6	319826	82	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.71964	4.872685000000001	5.02573	0.0718646	0.00985879	0.168159	0.0664239
chr21	45499844	45499944	7631303	0	+	0.41	(0.39,0.419]	chr21	797812	18	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	1	126	2	3.60514	4.872655	6.14017	0.0219642	0.00100955	0.101375	0.0142887
chr6	31734763	31734862	3119433	0	-	0.575758	(0.523,0.58]	chr6	303332	1	INTRON	INTRON	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000616760.1:ENST00000375784.8	protein_coding	protein_coding	protein_coding	protein_coding	4	184	2	2.61834	4.872624999999999	7.12691	0.0106498	0.00127326	0.0698448	0.0217367
chr7	47517839	47517939	3588991	0	-	0.52	(0.485,0.523]	chr7	346138	105	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.84611	4.8724050000000005	4.8987	0.0608067	0.0129327	0.158506	0.0778105
chr9	93662506	93662606	4184523	0	+	0.49	(0.485,0.523]	chr9	397768	2	SS3_PROX	SS3_PROX:INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.84611	4.8724050000000005	4.8987	0.0608067	0.0129327	0.158506	0.0778105
chr1	1305929	1306020	380905	0	-	0.67033	(0.58,1]	chr1	43018	1	INTRON	INTRON	ACAP3	ENSG00000131584.19	ENST00000354700.10:ENST00000472541.5:ENST00000354980.7:ENST00000479108.5:ENST00000438966.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.58025	4.87239	5.16453	0.0249802	0.0172566	0.10758	0.0923809
chr10	79204271	79204370	4533401	0	+	0.59596	(0.58,1]	chr10	432445	22	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.58025	4.87239	5.16453	0.0249802	0.0172566	0.10758	0.0923809
chr14	104778476	104778571	6057674	0	-	0.652632	(0.58,1]	chr14	594698	19	EXON_MRNA	EXON_MRNA:INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000557552.1:ENST00000683722.1:ENST00000555528.5:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000554848.5:ENST00000682269.1:ENST00000555380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	44	2	4.58025	4.87239	5.16453	0.0249802	0.0172566	0.10758	0.0923809
chr19	952493	952593	7185371	0	+	0.63	(0.58,1]	chr19	730741	194	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.58025	4.87239	5.16453	0.0249802	0.0172566	0.10758	0.0923809
chr19	17483881	17483961	7220771	0	+	0.65	(0.58,1]	chr19	738262	1	UTR5	UTR5:EXON_MRNA:INTRON	SLC27A1	ENSG00000130304.17	ENST00000600277.5:ENST00000598424.5:ENST00000252595.12:ENST00000599380.5:ENST00000600297.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.58025	4.87239	5.16453	0.0249802	0.0172566	0.10758	0.0923809
chr9	134341530	134341630	4260838	0	+	0.7	(0.58,1]	chr9	406311	145	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.58025	4.87239	5.16453	0.0249802	0.0172566	0.10758	0.0923809
chr16	50341082	50341181	6587923	0	-	0.434343	(0.419,0.45]	chr16	658565	6	INTRON	INTRON	BRD7	ENSG00000166164.16	ENST00000394688.8:ENST00000394689.2:ENST00000475877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	106	2	4.1167299999999996	4.872389999999999	5.62805	0.0280406	0.00235149	0.113651	0.0258525
chr8	22560930	22560990	3771902	0	+	0.55	(0.523,0.58]	chr8	362928	1	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	SORBS3	ENSG00000120896.14	ENST00000240123.12:ENST00000517500.5:ENST00000517535.5:ENST00000523402.5:ENST00000520563.3:ENST00000524057.3:ENST00000518512.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	106	2	3.229	4.87237	6.51574	0.0152072	0.00409625	0.0861813	0.0413652
chr1	112705255	112705342	563021	0	-	0.505747	(0.485,0.523]	chr1	64619	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RHOC	ENSG00000155366.17	ENST00000369633.6:ENST00000369642.7:ENST00000339083.12:ENST00000285735.6:ENST00000468093.5:ENST00000369638.6:ENST00000369637.5:ENST00000369636.6:ENST00000484280.6:ENST00000369632.6:ENST00000425265.6:ENST00000436685.6:ENST00000528831.5:ENST00000484054.3:ENST00000478447.1:ENST00000527563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	102	2	3.38908	4.872199999999999	6.35532	0.0107186	0.00545609	0.0700744	0.0486984
chr6	41586409	41586508	2912915	0	+	0.616162	(0.58,1]	chr6	285786	5	INTRON	INTRON	FOXP4	ENSG00000137166.17	ENST00000307972.10:ENST00000373063.7:ENST00000409208.5:ENST00000373057.7	protein_coding	protein_coding	protein_coding	protein_coding	2	223	2	4.51752	4.87214	5.22676	0.00209278	3.52186e-5	0.0287557	0.00126754
chr10	79184704	79184804	4533204	0	+	0.56	(0.523,0.58]	chr10	432438	222	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.43597	4.87196	5.30795	0.0315825	0.0313935	0.127822	0.120781
chr14	54569011	54569111	5819463	0	+	0.54	(0.523,0.58]	chr14	569049	5	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.43597	4.87196	5.30795	0.0315825	0.0313935	0.127822	0.120781
chr19	5288232	5288332	7316490	0	-	0.5	(0.485,0.523]	chr19	755347	16	INTRON	INTRON	PTPRS	ENSG00000105426.18	ENST00000588552.5:ENST00000262963.11:ENST00000591760.5:ENST00000586065.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	97	2	3.92296	4.871885	5.82081	0.0138807	0.00288574	0.0804838	0.0297057
chr20	36859573	36859673	7557097	0	-	0.5	(0.485,0.523]	chr20	789158	1	UTR5	UTR5:EXON_MRNA:INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	2	130	2	3.40934	4.871615	6.33389	0.00567224	0.00351152	0.0496143	0.0339498
chr12	120983466	120983565	5340965	0	+	0.363636	(0.36,0.39]	chr12	521546	40	INTRON	INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000400024.6:ENST00000560968.5:ENST00000402929.5:ENST00000535955.5:ENST00000538626.2:ENST00000538646.5:ENST00000541924.5:ENST00000544574.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	129	2	3.77666	4.871595	5.96653	0.0164162	0.00155347	0.0877406	0.0193429
chr20	44401800	44401900	7482930	0	+	0.63	(0.58,1]	chr20	779633	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000682427.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	356	2	4.589	4.871505000000001	5.15401	5.00792e-4	2.8122e-5	0.0129939	0.00107401
chr19	40089665	40089748	7379226	0	-	0.457831	(0.45,0.485]	chr19	765586	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF780A	ENSG00000197782.15	ENST00000450241.6:ENST00000414720.6:ENST00000455521.5:ENST00000340963.9:ENST00000683561.1:ENST00000595687.6:ENST00000594395.5:ENST00000595773.5:ENST00000599368.5:ENST00000601715.5:ENST00000601688.5:ENST00000599972.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	1	99	2	3.70282	4.871214999999999	6.03961	0.0108974	0.00539085	0.0707085	0.0450882
chr6	28350171	28350271	2889176	0	+	0.63	(0.58,1]	chr6	281299	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZKSCAN3	ENSG00000189298.14	ENST00000252211.7:ENST00000377255.3:ENST00000341464.9	protein_coding	protein_coding	protein_coding	protein_coding	2	121	2	3.2803	4.87121	6.46212	0.00374905	0.00211728	0.0352817	0.028892
chr11	70631829	70631929	5060591	0	-	0.55	(0.523,0.58]	chr11	492663	1285	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.5249	4.871085	5.21727	0.0361597	0.0266135	0.127853	0.118113
chr12	121514689	121514787	5527594	0	-	0.561224	(0.523,0.58]	chr12	544601	9	INTRON	INTRON	KDM2B	ENSG00000089094.20	ENST00000377071.9:ENST00000377069.8:ENST00000611216.4:ENST00000538503.5:ENST00000543025.5:ENST00000538046.6:ENST00000446152.6:ENST00000542030.5:ENST00000538379.5:ENST00000545022.5:ENST00000541318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.5249	4.871085	5.21727	0.0361597	0.0266135	0.127853	0.118113
chr16	29299191	29299291	6433830	0	+	0.55	(0.523,0.58]	chr16	636749	185	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1	lncRNA	lncRNA	lncRNA	lncRNA	0	46	2	4.5249	4.871085	5.21727	0.0361597	0.0266135	0.127853	0.118113
chr16	57768526	57768620	6597101	0	-	0.542553	(0.523,0.58]	chr16	659685	12	INTRON	INTRON	KIFC3	ENSG00000140859.16	ENST00000379655.8:ENST00000445690.7:ENST00000465878.6:ENST00000421376.6:ENST00000541240.5:ENST00000540079.6:ENST00000543930.5:ENST00000562903.5:ENST00000564136.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.5249	4.871085	5.21727	0.0361597	0.0266135	0.127853	0.118113
chr17	2083543	2083642	6832782	0	-	0.545455	(0.523,0.58]	chr17	691062	12	INTRON	INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11:ENST00000573166.5:ENST00000354901.8:ENST00000536871.6:ENST00000575454.1:ENST00000575338.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.5249	4.871085	5.21727	0.0361597	0.0266135	0.127853	0.118113
chr1	3471991	3472091	5831	0	+	0.7	(0.58,1]	chr1	1235	2	SS5_PROX	SS5_PROX:INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5:ENST00000464620.1:ENST00000418137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	49	2	4.18518	4.870995	5.55681	0.0374658	0.0126042	0.139793	0.0761905
chr16	85457207	85457307	6517643	0	+	0.59	(0.58,1]	chr16	646391	979	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.18518	4.870995	5.55681	0.0374658	0.0126042	0.139793	0.0761905
chr19	15645790	15645863	7215412	0	+	0.616438	(0.58,1]	chr19	737142	2	CDS	CDS:EXON_MRNA:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1:ENST00000609670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	49	2	4.18518	4.870995	5.55681	0.0374658	0.0126042	0.139793	0.0761905
chr13	98365737	98365837	5635907	0	+	0.38	(0.36,0.39]	chr13	553531	3	SS5_PROX	SS5_PROX:INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5:ENST00000595817.5:ENST00000595380.5:ENST00000596467.5:ENST00000600032.5:ENST00000601853.5:ENST00000596613.5:ENST00000599040.5:ENST00000602263.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	120	2	2.95428	4.870665	6.78705	0.0305895	0.00367488	0.126768	0.0389784
chr7	139688061	139688161	3723026	0	-	0.62	(0.58,1]	chr7	357498	560	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	2	145	2	3.09963	4.87066	6.64169	0.0158502	6.2385e-5	0.0859576	0.00192539
chr1	227767158	227767253	357644	0	+	0.610526	(0.58,1]	chr1	40317	3	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SNAP47	ENSG00000143740.15	ENST00000681827.1:ENST00000679575.1:ENST00000680854.1:ENST00000681006.1:ENST00000366760.5:ENST00000681447.1:ENST00000680992.1:ENST00000680695.1:ENST00000366759.9:ENST00000315781.10:ENST00000681685.1:ENST00000681678.1:ENST00000681242.1:ENST00000681149.1:ENST00000418653.6:ENST00000617596.5:ENST00000681929.1:ENST00000478768.3:ENST00000426344.6:ENST00000680202.1:ENST00000679561.1:ENST00000681465.1:ENST00000491439.2:ENST00000681554.1:ENST00000681252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	90	2	4.0743	4.87064	5.66698	0.0102927	0.00136577	0.0684871	0.0176851
chr19	1165601	1165701	7305708	0	-	0.58	(0.523,0.58]	chr19	753054	106	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5:ENST00000587655.2	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.65157	4.870195000000001	5.08882	0.0787008	0.00834774	0.175203	0.0598672
chr6	149704856	149704955	3288885	0	-	0.353535	(0.33,0.36]	chr6	317860	22	INTRON	INTRON	LATS1	ENSG00000131023.13	ENST00000543571.6:ENST00000441107.5:ENST00000392273.7:ENST00000458696.2:ENST00000542720.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.73368	4.87005	5.00642	0.0542065	0.0216127	0.151733	0.105648
chr10	102653460	102653559	4576559	0	+	0.555556	(0.523,0.58]	chr10	437285	1	EXON_MRNA	EXON_MRNA:INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1:ENST00000487927.6:ENST00000644979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.83424	4.86962	4.905	0.0563605	0.0144272	0.154188	0.0833845
chr11	75512329	75512428	5080439	0	-	0.535354	(0.523,0.58]	chr11	494392	30	INTRON	INTRON	GDPD5	ENSG00000158555.15	ENST00000336898.8:ENST00000532435.5:ENST00000529095.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.83424	4.86962	4.905	0.0563605	0.0144272	0.154188	0.0833845
chr15	22557292	22557392	6059847	0	+	0.57	(0.523,0.58]	chr15	594970	2	SS5_PROX	SS5_PROX:INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	44	2	4.83424	4.86962	4.905	0.0563605	0.0144272	0.154188	0.0833845
chr16	81622499	81622599	6509522	0	+	0.54	(0.523,0.58]	chr16	645926	4	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.83424	4.86962	4.905	0.0563605	0.0144272	0.154188	0.0833845
chr19	16379630	16379729	7343727	0	-	0.525253	(0.523,0.58]	chr19	760674	20	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.83424	4.86962	4.905	0.0563605	0.0144272	0.154188	0.0833845
chr20	4991109	4991209	7518472	0	-	0.53	(0.523,0.58]	chr20	784906	198	INTRON	INTRON	SLC23A2	ENSG00000089057.15	ENST00000379333.5:ENST00000338244.6:ENST00000468355.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.83424	4.86962	4.905	0.0563605	0.0144272	0.154188	0.0833845
chr21	8809968	8810068	7637415	0	-	0.58	(0.523,0.58]	chr21	798930	24	INTRON	INTRON	ENSG00000286033	ENSG00000286033.1	ENST00000651312.1	lncRNA	lncRNA	lncRNA	lncRNA	0	44	2	4.83424	4.86962	4.905	0.0563605	0.0144272	0.154188	0.0833845
chr7	127975772	127975872	3471485	0	+	0.58	(0.523,0.58]	chr7	335423	262	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.83424	4.86962	4.905	0.0563605	0.0144272	0.154188	0.0833845
chr9	123404987	123405087	4396610	0	-	0.56	(0.523,0.58]	chr9	419589	11	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.83424	4.86962	4.905	0.0563605	0.0144272	0.154188	0.0833845
chr11	70765167	70765266	5061933	0	-	0.545455	(0.523,0.58]	chr11	492701	473	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	98	2	3.58927	4.86939	6.14951	0.00793972	0.00656975	0.0596361	0.0510026
chr10	18553470	18553570	4642263	0	-	0.45	(0.419,0.45]	chr10	443321	11	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.29342	4.868945	5.44447	0.0526662	0.0364384	0.167062	0.128173
chr10	79161652	79161752	4532973	0	+	0.43	(0.419,0.45]	chr10	432433	2	SS3_PROX	SS3_PROX:INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.29342	4.868945	5.44447	0.0526662	0.0364384	0.167062	0.128173
chr9	41925959	41926057	4310219	0	-	0.44898	(0.419,0.45]	chr9	412119	15	INTRON	INTRON	CNTNAP3B	ENSG00000154529.15	ENST00000612828.4:ENST00000377561.7:ENST00000619138.4:ENST00000618777.4:ENST00000479351.5:ENST00000489789.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	50	2	4.29342	4.868945	5.44447	0.0526662	0.0364384	0.167062	0.128173
chr13	100524511	100524610	5647363	0	+	0.383838	(0.36,0.39]	chr13	554135	86	INTRON	INTRON	PCCA	ENSG00000175198.17	ENST00000376286.8:ENST00000376279.7:ENST00000376285.6:ENST00000647303.1:ENST00000637657.1:ENST00000636366.1:ENST00000636475.1:ENST00000458283.5:ENST00000428969.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.6317	4.86889	5.10608	0.0950937	0.0111429	0.189021	0.071709
chr2	111244630	111244729	1251069	0	-	0.363636	(0.36,0.39]	chr2	134822	43	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000673962.1:ENST00000674132.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000662889.1:ENST00000665096.1:ENST00000674092.1:ENST00000673958.1:ENST00000673770.1:ENST00000673961.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000656303.1:ENST00000666367.1:ENST00000666652.1:ENST00000669050.1:ENST00000667218.1:ENST00000656067.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000673700.1:ENST00000443467.6:ENST00000451884.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000655573.1	lncRNA	lncRNA	lncRNA	lncRNA	0	45	2	4.6317	4.86889	5.10608	0.0950937	0.0111429	0.189021	0.071709
chr13	32171770	32171869	5562366	0	+	0.323232	(0.29,0.33]	chr13	548646	1	INTRON	INTRON	FRY	ENSG00000073910.23	ENST00000645780.1:ENST00000647500.1:ENST00000642040.1:ENST00000542859.6	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.82544	4.868805	4.91217	0.0522244	0.0156279	0.148503	0.0877396
chr19	19051021	19051121	7225409	0	+	0.44	(0.419,0.45]	chr19	739569	66	INTRON	INTRON	ARMC6	ENSG00000105676.14	ENST00000392335.6:ENST00000537263.5:ENST00000535612.6:ENST00000269932.10:ENST00000541725.5:ENST00000546344.5:ENST00000540792.5:ENST00000536098.5:ENST00000541898.5:ENST00000539985.5:ENST00000545091.5:ENST00000535288.1:ENST00000538663.5:ENST00000392336.7:ENST00000535758.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	118	2	4.54948	4.86876	5.18804	0.051668	7.67962e-4	0.148503	0.0118316
chr9	132071450	132071550	4422743	0	-	0.48	(0.45,0.485]	chr9	422092	389	INTRON	INTRON	MED27	ENSG00000160563.14	ENST00000651950.1:ENST00000357028.6:ENST00000292035.10:ENST00000651555.1:ENST00000650776.1:ENST00000444872.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	104	2	4.3114	4.868634999999999	5.42587	0.0290571	0.00111665	0.116079	0.0152867
chr13	113588144	113588244	5658881	0	+	0.47	(0.45,0.485]	chr13	555775	19	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	99	2	3.9881	4.868615	5.74913	0.017574	0.0026335	0.0906595	0.0278798
chr16	85227466	85227566	6515343	0	+	0.57	(0.523,0.58]	chr16	646376	1	SS5_PROX	SS5_PROX:INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	123	2	2.80981	4.86832	6.92683	0.0364868	0.00188118	0.139793	0.0270971
chr3	152357906	152358006	1599279	0	+	0.4	(0.39,0.419]	chr3	168991	223	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	1	102	2	3.68433	4.86829	6.05225	0.0130948	0.00637588	0.0782739	0.0501889
chr1	161019909	161020009	606375	0	-	0.37	(0.36,0.39]	chr1	72054	169	INTRON	INTRON	F11R:ENSG00000270149	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7:ENST00000537746.1:ENST00000470694.1:ENST00000335772.3:ENST00000602966.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.79458	4.868259999999999	4.94194	0.064883	0.0207145	0.162218	0.102713
chr3	60728669	60728769	1800897	0	-	0.38	(0.36,0.39]	chr3	186816	381	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5:ENST00000490952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.79458	4.868259999999999	4.94194	0.064883	0.0207145	0.162218	0.102713
chr4	163117554	163117654	2358953	0	-	0.39	(0.36,0.39]	chr4	235660	69	INTRON	INTRON	NAF1	ENSG00000145414.9	ENST00000509434.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.79458	4.868259999999999	4.94194	0.064883	0.0207145	0.162218	0.102713
chrX	2224528	2224628	7966083	0	-	0.37	(0.36,0.39]	chrX	834328	29	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.79458	4.868259999999999	4.94194	0.064883	0.0207145	0.162218	0.102713
chr1	148538237	148538327	582001	0	-	0.5	(0.485,0.523]	chr1	66874	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF14	ENSG00000270629.7	ENST00000619423.4:ENST00000614999.4:ENST00000621066.4:ENST00000611826.4:ENST00000616120.4:ENST00000621070.4	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.83072	4.86807	4.90542	0.0561086	0.0148956	0.154188	0.0847741
chrX	2383759	2383859	7967681	0	-	0.49	(0.485,0.523]	chrX	834355	454	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.83072	4.86807	4.90542	0.0561086	0.0148956	0.154188	0.0847741
chr1	44247239	44247338	459645	0	-	0.393939	(0.39,0.419]	chr1	55307	48	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.63037	4.86794	5.10551	0.0963077	0.0112089	0.189169	0.071709
chr1	220028411	220028509	665907	0	-	0.408163	(0.39,0.419]	chr1	78039	28	INTRON	INTRON	EPRS1	ENSG00000136628.18	ENST00000366923.8:ENST00000609181.5:ENST00000477030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.63037	4.86794	5.10551	0.0963077	0.0112089	0.189169	0.071709
chr17	43547013	43547113	6739035	0	+	0.41	(0.39,0.419]	chr17	678633	18	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	45	2	4.63037	4.86794	5.10551	0.0963077	0.0112089	0.189169	0.071709
chr4	39113917	39114009	2032435	0	+	0.391304	(0.39,0.419]	chr4	207469	3	INTRON	INTRON	KLHL5	ENSG00000109790.18	ENST00000261425.7:ENST00000508137.6:ENST00000504108.7:ENST00000261426.10:ENST00000381930.8:ENST00000515612.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.63037	4.86794	5.10551	0.0963077	0.0112089	0.189169	0.071709
chr12	57163183	57163283	5240762	0	+	0.42	(0.419,0.45]	chr12	510246	2	SS5_PROX	SS5_PROX:INTRON	LRP1	ENSG00000123384.14	ENST00000243077.8	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.7549	4.86772	4.98054	0.0888907	0.0154548	0.183874	0.0869771
chr4	109757562	109757662	2307828	0	-	0.44	(0.419,0.45]	chr4	232048	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000285330:CFI	ENSG00000285330.1:ENSG00000205403.15	ENST00000645635.1:ENST00000695844.1:ENST00000695845.1:ENST00000504853.3:ENST00000394634.7:ENST00000394635.8:ENST00000512148.5:ENST00000695846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	45	2	4.81671	4.8675999999999995	4.91849	0.08258	0.0174488	0.179396	0.0928044
chr7	77709236	77709336	3400435	0	+	0.42	(0.419,0.45]	chr7	328497	115	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.81671	4.8675999999999995	4.91849	0.08258	0.0174488	0.179396	0.0928044
chr9	94846742	94846842	4188448	0	+	0.44	(0.419,0.45]	chr9	398069	363	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000277198.6:ENST00000297979.9:ENST00000424143.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.81671	4.8675999999999995	4.91849	0.08258	0.0174488	0.179396	0.0928044
chr13	50091844	50091944	5593510	0	+	0.44	(0.419,0.45]	chr13	551518	80	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000469754.3:ENST00000655550.1:ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000659280.2	lncRNA	lncRNA	lncRNA	lncRNA	1	103	2	3.82602	4.867555	5.90909	0.0184411	0.00478241	0.0927235	0.0415621
chr5	54236408	54236508	2657657	0	-	0.4	(0.39,0.419]	chr5	263534	641	INTRON	INTRON	ARL15	ENSG00000185305.12	ENST00000504924.6:ENST00000502271.5:ENST00000510591.6:ENST00000507646.2:ENST00000505630.5:ENST00000505383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	45	2	4.79402	4.86731	4.9406	0.0658437	0.0208208	0.162385	0.102713
chr2	20675779	20675878	725050	0	+	0.535354	(0.523,0.58]	chr2	84775	45	UTR3	UTR3:EXON_MRNA	GDF7	ENSG00000143869.7	ENST00000272224.5	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.34118	4.8672249999999995	5.39327	0.0372357	0.0277354	0.139793	0.112851
chr5	80440806	80440897	2465530	0	+	0.417582	(0.39,0.419]	chr5	246293	4	INTRON	INTRON	ZFYVE16	ENSG00000039319.17	ENST00000338008.9:ENST00000510158.5:ENST00000512558.5:ENST00000505560.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	103	2	3.55811	4.86704	6.17597	0.0107103	0.00853617	0.0701493	0.0610387
chr6	119242062	119242162	3246207	0	-	0.44	(0.419,0.45]	chr6	314531	368	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	3	210	2	2.72713	4.86695	7.00677	0.0355767	1.1216e-4	0.127529	0.00298349
chr11	96166306	96166406	5111799	0	-	0.28	[0,0.29]	chr11	496566	724	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.14609	4.866944999999999	5.5878	0.0482299	0.0128957	0.159496	0.0773953
chr11	28122380	28122480	4823537	0	+	0.23	[0,0.29]	chr11	461830	2	SS5_PROX	SS5_PROX:INTRON	METTL15	ENSG00000169519.21	ENST00000406787.7:ENST00000403099.5:ENST00000451385.6:ENST00000407364.8:ENST00000532947.2:ENST00000634627.1:ENST00000634973.1:ENST00000303459.10:ENST00000634721.1:ENST00000634762.1:ENST00000437814.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	94	2	4.03858	4.866904999999999	5.69523	0.010611	0.00189492	0.0697759	0.0221912
chr1	235217306	235217405	690071	0	-	0.353535	(0.33,0.36]	chr1	81281	29	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000471257.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	100	2	3.89271	4.8665400000000005	5.84037	0.0156381	0.00362349	0.0850479	0.0343232
chr1	236844769	236844868	366313	0	+	0.454545	(0.45,0.485]	chr1	41482	58	INTRON	INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1:ENST00000681937.1:ENST00000366576.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	4.67139	4.866384999999999	5.06138	0.0492008	0.0223378	0.146142	0.108193
chr16	89437117	89437217	6661205	0	-	0.48	(0.45,0.485]	chr16	666753	54	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.67139	4.866384999999999	5.06138	0.0492008	0.0223378	0.146142	0.108193
chr17	78718322	78718421	6978673	0	-	0.474747	(0.45,0.485]	chr17	712611	14	INTRON	INTRON	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000589297.5:ENST00000591574.5:ENST00000590775.5:ENST00000589768.5:ENST00000586043.5:ENST00000587308.5:ENST00000590300.1:ENST00000591095.1:ENST00000592497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.67139	4.866384999999999	5.06138	0.0492008	0.0223378	0.146142	0.108193
chr6	144664161	144664260	3023710	0	+	0.454545	(0.45,0.485]	chr6	295445	35	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000367526.8:ENST00000367525.3	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.67139	4.866384999999999	5.06138	0.0492008	0.0223378	0.146142	0.108193
chr1	44031087	44031177	459366	0	-	0.6	(0.58,1]	chr1	55275	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SLC6A9	ENSG00000196517.13	ENST00000372306.7:ENST00000372310.8:ENST00000673836.1:ENST00000475075.6:ENST00000492434.6:ENST00000489764.1:ENST00000466926.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	102	2	4.67156	4.86613	5.0607	0.029633	2.20504e-4	0.116079	0.00485102
chr10	79109624	79109724	4532451	0	+	0.59	(0.58,1]	chr10	432420	400	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.29454	4.86603	5.43752	0.0305531	0.0156166	0.126768	0.0849828
chr16	85393334	85393434	6517004	0	+	0.62	(0.58,1]	chr16	646391	340	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.29454	4.86603	5.43752	0.0305531	0.0156166	0.126768	0.0849828
chrX	47220290	47220388	7877806	0	+	0.510204	(0.485,0.523]	chrX	825683	8	INTRON	INTRON	CDK16	ENSG00000102225.17	ENST00000517997.5:ENST00000517479.1:ENST00000457458.6:ENST00000522883.1:ENST00000520295.5:ENST00000357227.9:ENST00000519758.5:ENST00000520893.5:ENST00000517426.5:ENST00000522234.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	130	2	3.55748	4.86587	6.17426	0.00754939	0.00236572	0.0578091	0.0259199
chr9	134413187	134413286	4261565	0	+	0.616162	(0.58,1]	chr9	406352	37	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000481739.2:ENST00000356384.4:ENST00000672570.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	243	2	4.59428	4.865795	5.13731	5.20448e-4	2.81862e-4	0.0132625	0.00579621
chr16	85456008	85456108	6517631	0	+	0.51	(0.485,0.523]	chr16	646391	967	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.33772	4.865705	5.39369	0.03818	0.0275819	0.140822	0.112782
chr19	5817495	5817594	7195561	0	+	0.50505	(0.485,0.523]	chr19	733105	117	INTRON	INTRON	NRTN	ENSG00000171119.3	ENST00000303212.3	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.33772	4.865705	5.39369	0.03818	0.0275819	0.140822	0.112782
chr19	15646651	15646751	7215421	0	+	0.5	(0.485,0.523]	chr19	737146	2	SS3_PROX	SS3_PROX:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1:ENST00000609670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.33772	4.865705	5.39369	0.03818	0.0275819	0.140822	0.112782
chr1	52448861	52448961	484146	0	-	0.42	(0.419,0.45]	chr1	57516	18	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000469810.1:ENST00000528642.5:ENST00000497120.1:ENST00000484723.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.63955	4.8654399999999995	5.09133	0.0586308	0.0293406	0.155565	0.125102
chr13	77056025	77056125	5615985	0	+	0.44	(0.419,0.45]	chr13	552914	370	INTRON	INTRON	ENSG00000283208	ENSG00000283208.2	ENST00000638147.2:ENST00000637192.1:ENST00000635838.1:ENST00000638101.1:ENST00000461131.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.63955	4.8654399999999995	5.09133	0.0586308	0.0293406	0.155565	0.125102
chr3	13206724	13206824	1691209	0	-	0.45	(0.419,0.45]	chr3	176566	422	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.63955	4.8654399999999995	5.09133	0.0586308	0.0293406	0.155565	0.125102
chr3	52235606	52235675	1777933	0	-	0.434783	(0.419,0.45]	chr3	184833	1	INTRON	INTRON	TWF2	ENSG00000247596.10	ENST00000305533.10:ENST00000678838.1:ENST00000679296.1:ENST00000676989.1:ENST00000678549.1:ENST00000678882.1:ENST00000678700.1:ENST00000676800.1:ENST00000677127.1:ENST00000678681.1:ENST00000499914.2:ENST00000472755.2:ENST00000678330.1:ENST00000676988.1:ENST00000677058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.63955	4.8654399999999995	5.09133	0.0586308	0.0293406	0.155565	0.125102
chr4	98274941	98275041	2089995	0	+	0.42	(0.419,0.45]	chr4	213026	130	INTRON	INTRON	RAP1GDS1	ENSG00000138698.15	ENST00000408927.8:ENST00000509011.5:ENST00000503667.5:ENST00000380158.8:ENST00000508490.5:ENST00000264572.11:ENST00000505378.5:ENST00000508213.5:ENST00000512857.5:ENST00000511379.5:ENST00000514122.5:ENST00000453712.6:ENST00000515187.5:ENST00000511212.5:ENST00000510870.5:ENST00000507303.5:ENST00000408900.7:ENST00000339360.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.63955	4.8654399999999995	5.09133	0.0586308	0.0293406	0.155565	0.125102
chr5	76508947	76509047	2458189	0	+	0.45	(0.419,0.45]	chr5	245482	460	INTRON	INTRON	IQGAP2	ENSG00000145703.17	ENST00000274364.11:ENST00000514350.5	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.63955	4.8654399999999995	5.09133	0.0586308	0.0293406	0.155565	0.125102
chr3	188760382	188760482	1657885	0	+	0.42	(0.419,0.45]	chr3	173845	1	SS5_PROX	SS5_PROX:INTRON	LPP	ENSG00000145012.14	ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000459897.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	106	2	3.42658	4.86519	6.3038	0.0119035	0.00990101	0.0749304	0.0671959
chr16	1473053	1473153	6532912	0	-	0.44	(0.419,0.45]	chr16	649008	12	INTRON	INTRON	CLCN7	ENSG00000103249.18	ENST00000382745.9:ENST00000448525.5:ENST00000262318.12:ENST00000561665.5:ENST00000567139.1:ENST00000564568.1:ENST00000566812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	45	2	4.69033	4.865185	5.04004	0.0958674	0.0137308	0.189038	0.0814223
chr17	32552532	32552632	6884062	0	-	0.43	(0.419,0.45]	chr17	698835	556	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000577352.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.69033	4.865185	5.04004	0.0958674	0.0137308	0.189038	0.0814223
chr2	128117911	128118008	889874	0	+	0.42268	(0.419,0.45]	chr2	100638	12	INTRON	INTRON	UGGT1	ENSG00000136731.13	ENST00000259253.11:ENST00000438277.5:ENST00000376723.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.69033	4.865185	5.04004	0.0958674	0.0137308	0.189038	0.0814223
chr3	136299159	136299256	1574570	0	+	0.298969	(0.29,0.33]	chr3	167002	7	INTRON	INTRON	PCCB	ENSG00000114054.14	ENST00000251654.9:ENST00000490504.5:ENST00000483687.5:ENST00000468777.5:ENST00000462637.5:ENST00000466072.5:ENST00000484181.5:ENST00000482086.5:ENST00000471595.5:ENST00000469217.5:ENST00000478469.5:ENST00000474833.5:ENST00000475214.5:ENST00000473073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	97	2	3.93355	4.865035	5.79652	0.0131751	0.00289464	0.0785398	0.0297681
chr2	171015744	171015843	1312716	0	-	0.434343	(0.419,0.45]	chr2	140568	4	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.85365	4.864815	4.87598	0.0768574	0.0197641	0.174882	0.100774
chr4	10101813	10101912	2195668	0	-	0.444444	(0.419,0.45]	chr4	222412	23	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.85365	4.864815	4.87598	0.0768574	0.0197641	0.174882	0.100774
chr9	111470601	111470700	4369032	0	-	0.494949	(0.485,0.523]	chr9	417454	187	INTRON	INTRON	ECPAS	ENSG00000136813.15	ENST00000684092.1:ENST00000338205.9:ENST00000259335.8:ENST00000602447.5:ENST00000602978.1	protein_coding	protein_coding	protein_coding	protein_coding	1	97	2	4.00429	4.864795	5.7253	0.0162644	0.00233191	0.0873195	0.0257012
chr3	13024894	13024994	1689385	0	-	0.44	(0.419,0.45]	chr3	176542	24	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	3	167	2	3.1693	4.864739999999999	6.56018	0.00648928	0.00481279	0.0532359	0.0417203
chr19	34386596	34386696	7243216	0	+	0.58	(0.523,0.58]	chr19	741718	46	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	132	2	4.10968	4.86472	5.61976	0.0075776	0.00236826	0.0579104	0.0259199
chrX	9543185	9543267	7843231	0	+	0.573171	(0.523,0.58]	chrX	822416	2	UTR5	UTR5:EXON_MRNA:INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.60868	4.86459	5.1205	0.0416463	0.0226775	0.136301	0.108193
chr10	18559166	18559266	4642320	0	-	0.4	(0.39,0.419]	chr10	443321	68	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.20027	4.86439	5.52851	0.0583327	0.029339	0.175217	0.116079
chr8	9773802	9773900	3754916	0	+	0.367347	(0.36,0.39]	chr8	360888	10	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.48559	4.864380000000001	5.24317	0.0433841	0.036329	0.139793	0.138813
chr6	43429395	43429490	2919227	0	+	0.536842	(0.523,0.58]	chr6	287099	9	INTRON	INTRON	ABCC10	ENSG00000124574.15	ENST00000372515.8:ENST00000372530.9:ENST00000502549.1:ENST00000443426.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	96	2	3.87732	4.864095	5.85087	0.0132767	0.00318505	0.0787251	0.0316631
chr16	81623597	81623697	6509533	0	+	0.39	(0.36,0.39]	chr16	645926	15	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.39677	4.863915	5.33106	0.0422707	0.0383628	0.149195	0.131324
chr8	25426192	25426292	3956460	0	-	0.38	(0.36,0.39]	chr8	377727	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000253476	ENSG00000253476.1	ENST00000523840.1	lncRNA	lncRNA	lncRNA	lncRNA	0	48	2	4.39677	4.863915	5.33106	0.0422707	0.0383628	0.149195	0.131324
chr1	153816072	153816172	591559	0	-	0.5	(0.485,0.523]	chr1	68901	4	SS5_PROX	SS5_PROX:INTRON	GATAD2B	ENSG00000143614.10	ENST00000368655.5:ENST00000634544.1:ENST00000634408.1:ENST00000634564.1	protein_coding	protein_coding	protein_coding	protein_coding	2	261	2	4.8291	4.863875	4.89865	0.00189708	1.85073e-4	0.0272161	0.00428663
chr12	3110591	3110690	5158876	0	+	0.474747	(0.45,0.485]	chr12	501337	265	INTRON	INTRON	TSPAN9	ENSG00000011105.14	ENST00000537971.5:ENST00000444315.6:ENST00000011898.10:ENST00000649909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	4.22352	4.86387	5.50422	0.0496712	0.0257993	0.160725	0.109555
chr3	78981515	78981615	1837321	0	-	0.31	(0.29,0.33]	chr3	188611	422	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.59993	4.863815	5.1277	0.0382902	0.0243639	0.131324	0.113231
chr11	28865190	28865290	4829234	0	+	0.31	(0.29,0.33]	chr11	461942	1229	INTRON	INTRON	LINC02742	ENSG00000249867.6	ENST00000662190.1:ENST00000513853.5	lncRNA	lncRNA	lncRNA	lncRNA	1	119	2	3.76046	4.86364	5.96682	0.0133892	0.00106564	0.0791055	0.0148659
chr12	42219462	42219562	5416910	0	-	0.41	(0.39,0.419]	chr12	530176	66	INTRON	INTRON	YAF2	ENSG00000015153.15	ENST00000534854.7:ENST00000327791.8:ENST00000380790.4:ENST00000552109.5:ENST00000547622.5:ENST00000547351.5:ENST00000551268.5:ENST00000548661.5:ENST00000546726.5:ENST00000547724.1:ENST00000552928.5:ENST00000548917.1:ENST00000547254.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.48504	4.863429999999999	5.24182	0.0441194	0.0364893	0.140174	0.139793
chr8	38765399	38765499	3802209	0	+	0.4	(0.39,0.419]	chr8	365828	76	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.48504	4.863429999999999	5.24182	0.0441194	0.0364893	0.140174	0.139793
chr1	48228250	48228349	120982	0	+	0.525253	(0.523,0.58]	chr1	15165	31	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	155	2	3.24957	4.86337	6.47717	0.00439843	0.00291932	0.0429852	0.029882
chr2	232898386	232898485	1383822	0	-	0.555556	(0.523,0.58]	chr2	147952	31	INTRON	INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000416114.3:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.58058	4.863300000000001	5.14602	0.0860403	0.00734367	0.181766	0.0550721
chr3	93956414	93956514	1853004	0	-	0.54	(0.523,0.58]	chr3	189045	273	INTRON	INTRON	PROS1	ENSG00000184500.16	ENST00000394236.9:ENST00000648381.1:ENST00000648853.1:ENST00000650591.1:ENST00000348974.5:ENST00000647936.1:ENST00000407433.6:ENST00000649103.1:ENST00000472684.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.58058	4.863300000000001	5.14602	0.0860403	0.00734367	0.181766	0.0550721
chr1	204082576	204082676	322145	0	+	0.57	(0.523,0.58]	chr1	36272	40	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1:ENST00000528591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	96	2	3.90605	4.86322	5.82039	0.0139724	0.00295607	0.0805959	0.0300958
chr22	15818373	15818473	7682907	0	+	0.6	(0.58,1]	chr22	803565	4	SS3_PROX	SS3_PROX:INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000383038.7:ENST00000447898.5	lncRNA	lncRNA	lncRNA	lncRNA	4	163	2	3.05592	4.86319	6.67046	0.00253207	0.00135763	0.0271327	0.0224546
chr10	91412764	91412863	4546543	0	+	0.464646	(0.45,0.485]	chr10	433731	18	INTRON	INTRON	HECTD2	ENSG00000165338.17	ENST00000631422.1:ENST00000446394.5:ENST00000298068.10:ENST00000371681.8	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.77571	4.863135	4.95056	0.0719884	0.0127826	0.168159	0.0773423
chr14	23512771	23512822	5757077	0	+	0.45098	(0.45,0.485]	chr14	564955	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ZFHX2-AS1	ENSG00000157306.14	ENST00000556354.5:ENST00000556613.1:ENST00000553985.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	44	2	4.77571	4.863135	4.95056	0.0719884	0.0127826	0.168159	0.0773423
chr7	5768235	5768334	3539063	0	-	0.484848	(0.45,0.485]	chr7	341737	9	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000411812.1:ENST00000416985.5:ENST00000476345.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.77571	4.863135	4.95056	0.0719884	0.0127826	0.168159	0.0773423
chr7	47360297	47360396	3587394	0	-	0.484848	(0.45,0.485]	chr7	346030	136	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.77571	4.863135	4.95056	0.0719884	0.0127826	0.168159	0.0773423
chr17	32362114	32362214	6721223	0	+	0.41	(0.39,0.419]	chr17	675149	2	INTRON	INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000581531.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	124	2	3.18264	4.862925000000001	6.54321	0.042233	3.49364e-4	0.13762	0.00675348
chr10	72400841	72400941	4709507	0	-	0.39	(0.36,0.39]	chr10	448923	209	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000476605.7:ENST00000642044.1:ENST00000635239.1:ENST00000418483.6:ENST00000398763.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	126	2	3.66953	4.862895	6.05626	0.0195747	0.00124043	0.0955413	0.0165207
chr17	15466260	15466360	6860097	0	-	0.62	(0.58,1]	chr17	695067	128	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	119	2	3.58144	4.862855	6.14427	0.00407804	0.00158507	0.0413652	0.0196418
chr9	7127065	7127165	4118673	0	+	0.42	(0.419,0.45]	chr9	391994	212	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000381306.7:ENST00000381309.8:ENST00000428870.6:ENST00000420847.2:ENST00000490806.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	103	2	3.65526	4.862640000000001	6.07002	0.0143746	0.00712959	0.0821732	0.0541241
chr3	32829529	32829629	1438987	0	+	0.37	(0.36,0.39]	chr3	153401	102	INTRON	INTRON	TRIM71	ENSG00000206557.6	ENST00000383763.6	protein_coding	protein_coding	protein_coding	protein_coding	5	528	2	3.95082	4.862615	5.77441	4.20172e-4	3.80706e-4	0.011772	0.00721291
chr13	113521729	113521828	5658496	0	+	0.393939	(0.39,0.419]	chr13	555716	6	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	103	2	4.05528	4.8626000000000005	5.66992	0.0237738	0.00258839	0.105296	0.027634
chr10	119394597	119394697	4595195	0	+	0.56	(0.523,0.58]	chr10	439179	133	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.7629	4.862435	4.96197	0.0521137	0.0167014	0.148503	0.0917029
chr11	7576998	7577096	4792570	0	+	0.530612	(0.523,0.58]	chr11	459336	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	PPFIBP2	ENSG00000166387.14	ENST00000684123.1:ENST00000299492.9:ENST00000527790.5:ENST00000524548.5:ENST00000529575.5:ENST00000533792.5:ENST00000532926.5:ENST00000684215.1:ENST00000650027.1:ENST00000525597.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.7629	4.862435	4.96197	0.0521137	0.0167014	0.148503	0.0917029
chr19	53521041	53521136	7290490	0	+	0.578947	(0.523,0.58]	chr19	750312	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ZNF331	ENSG00000130844.19	ENST00000647573.1:ENST00000648236.1:ENST00000513929.6:ENST00000253144.13	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.7629	4.862435	4.96197	0.0521137	0.0167014	0.148503	0.0917029
chr6	34909683	34909783	2900716	0	+	0.53	(0.523,0.58]	chr6	284492	197	INTRON	INTRON	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1:ENST00000650178.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.7629	4.862435	4.96197	0.0521137	0.0167014	0.148503	0.0917029
chr14	89203535	89203635	6026130	0	-	0.61	(0.58,1]	chr14	591423	127	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000555010.1:ENST00000557718.5:ENST00000553353.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.66416	4.86243	5.0607	0.029633	0.0144381	0.116079	0.0833845
chr16	960852	960952	6531644	0	-	0.6	(0.58,1]	chr16	648714	58	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1:ENST00000566609.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.66416	4.86243	5.0607	0.029633	0.0144381	0.116079	0.0833845
chr19	4493502	4493602	7193771	0	+	0.7	(0.58,1]	chr19	732771	4	SS3_PROX	SS3_PROX:INTRON	HDGFL2	ENSG00000167674.15	ENST00000616600.5:ENST00000621835.4:ENST00000589486.5:ENST00000615225.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.66416	4.86243	5.0607	0.029633	0.0144381	0.116079	0.0833845
chr2	73266682	73266743	1190594	0	-	0.672131	(0.58,1]	chr2	129024	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	FBXO41	ENSG00000163013.12	ENST00000295133.9:ENST00000520530.3:ENST00000521871.5:ENST00000519873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.66416	4.86243	5.0607	0.029633	0.0144381	0.116079	0.0833845
chr7	756281	756381	3306576	0	+	0.61	(0.58,1]	chr7	320231	1	SS3_PROX	SS3_PROX:INTRON	DNAAF5	ENSG00000164818.16	ENST00000297440.11:ENST00000437419.5:ENST00000440747.5	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.66416	4.86243	5.0607	0.029633	0.0144381	0.116079	0.0833845
chr7	76999708	76999808	3398797	0	+	0.61	(0.58,1]	chr7	328286	90	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	43	2	4.66416	4.86243	5.0607	0.029633	0.0144381	0.116079	0.0833845
chr17	35073854	35073954	6888044	0	-	0.32	(0.29,0.33]	chr17	699071	38	INTRON	INTRON	RFFL	ENSG00000092871.17	ENST00000315249.11:ENST00000584655.5:ENST00000447669.6:ENST00000584541.1:ENST00000414419.6:ENST00000581265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.58769	4.862425	5.13716	0.0806047	0.00805226	0.177452	0.0582806
chr3	128899561	128899661	1564897	0	+	0.33	(0.29,0.33]	chr3	165469	1	SS5_PROX	SS5_PROX:INTRON	ACAD9	ENSG00000177646.20	ENST00000681583.1:ENST00000681367.1:ENST00000679613.1:ENST00000680636.1:ENST00000511325.2:ENST00000681319.1:ENST00000681585.1:ENST00000681784.1:ENST00000308982.12:ENST00000679399.1:ENST00000681552.1:ENST00000511227.5:ENST00000505192.5:ENST00000679990.1:ENST00000681886.1:ENST00000679431.1:ENST00000680764.1:ENST00000505867.5:ENST00000680744.1:ENST00000679824.1:ENST00000681589.1:ENST00000679715.1:ENST00000511526.5:ENST00000508971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.58769	4.862425	5.13716	0.0806047	0.00805226	0.177452	0.0582806
chr5	171914142	171914242	2809375	0	-	0.3	(0.29,0.33]	chr5	275170	4	SS5_PROX	SS5_PROX:INTRON	FBXW11	ENSG00000072803.18	ENST00000296933.10:ENST00000517395.6:ENST00000265094.9:ENST00000393802.6:ENST00000523843.5:ENST00000519693.5:ENST00000520376.1:ENST00000518752.1:ENST00000522507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.58769	4.862425	5.13716	0.0806047	0.00805226	0.177452	0.0582806
chr20	8263711	8263811	7427899	0	+	0.26	[0,0.29]	chr20	773686	69	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	94	2	3.63885	4.862345	6.08584	0.00541375	0.00505376	0.0465263	0.045264
chr1	174534043	174534143	281741	0	+	0.46	(0.45,0.485]	chr1	32717	1395	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	119	2	3.38032	4.8622700000000005	6.34422	0.0285946	4.24458e-4	0.115498	0.00777807
chr11	14334501	14334601	4999192	0	-	0.34	(0.33,0.36]	chr11	483723	258	INTRON	INTRON	RRAS2	ENSG00000133818.14	ENST00000256196.9:ENST00000537760.5:ENST00000529237.5:ENST00000534746.5:ENST00000526063.5:ENST00000532814.5:ENST00000531807.5:ENST00000532950.5:ENST00000531421.5:ENST00000526717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	134	2	3.31744	4.862105	6.40677	0.00599713	0.00510929	0.0509222	0.0434253
chr7	47350838	47350938	3587299	0	-	0.4	(0.39,0.419]	chr7	346030	41	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	107	2	4.27183	4.862035	5.45224	0.032783	0.00148741	0.122593	0.0186923
chr11	71201118	71201218	5066314	0	-	0.47	(0.45,0.485]	chr11	492802	259	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000482659.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.7111	4.861885	5.01267	0.0781398	0.011221	0.175203	0.071709
chr1	154607591	154607691	594189	0	-	0.5	(0.485,0.523]	chr1	69507	2	SS5_PROX	SS5_PROX:INTRON	ADAR	ENSG00000160710.18	ENST00000681056.1:ENST00000680270.1:ENST00000679375.1:ENST00000679899.1:ENST00000681901.1:ENST00000648714.2:ENST00000681235.1:ENST00000647682.2:ENST00000368474.9:ENST00000680305.1:ENST00000368471.8:ENST00000648231.2:ENST00000649022.2:ENST00000681786.1:ENST00000679465.1:ENST00000679805.1:ENST00000649408.2:ENST00000649042.1:ENST00000649724.1:ENST00000648311.1:ENST00000649749.1:ENST00000649021.1:ENST00000529168.2:ENST00000681683.1:ENST00000648871.1:ENST00000463920.5:ENST00000680472.1:ENST00000471068.2:ENST00000494866.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.581	4.86174	5.14248	0.085711	0.00761903	0.181766	0.0561937
chr16	85586133	85586233	6518934	0	+	0.49	(0.485,0.523]	chr16	646396	294	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.581	4.86174	5.14248	0.085711	0.00761903	0.181766	0.0561937
chr16	89427558	89427658	6661109	0	-	0.5	(0.485,0.523]	chr16	666747	88	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.581	4.86174	5.14248	0.085711	0.00761903	0.181766	0.0561937
chr2	152337919	152338019	925490	0	+	0.49	(0.485,0.523]	chr2	103058	18	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.581	4.86174	5.14248	0.085711	0.00761903	0.181766	0.0561937
chr2	239086126	239086226	1389536	0	-	0.52	(0.485,0.523]	chr2	148608	3	PRIMIRNA	PRIMIRNA:INTRON	HDAC4:MIR4441	ENSG00000068024.18:ENSG00000264810.1	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000487617.5:ENST00000582623.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	0	44	2	4.581	4.86174	5.14248	0.085711	0.00761903	0.181766	0.0561937
chr6	43429301	43429395	2919226	0	+	0.319149	(0.29,0.33]	chr6	287099	8	INTRON	INTRON	ABCC10	ENSG00000124574.15	ENST00000372515.8:ENST00000372530.9:ENST00000502549.1:ENST00000443426.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.75412	4.86163	4.96914	0.0481918	0.0180435	0.144601	0.0952934
chr1	43815795	43815892	109419	0	+	0.474227	(0.45,0.485]	chr1	13533	4	INTRON	INTRON	ST3GAL3	ENSG00000126091.21	ENST00000646096.1:ENST00000532911.6:ENST00000643597.1:ENST00000643886.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000646109.1:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000479383.6:ENST00000647482.1:ENST00000645394.1:ENST00000647128.1:ENST00000461066.6:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1:ENST00000642194.1:ENST00000372368.7:ENST00000646686.1:ENST00000372366.6:ENST00000361812.9:ENST00000469715.6:ENST00000372369.5:ENST00000372367.5:ENST00000372365.5:ENST00000528371.5:ENST00000533212.5:ENST00000530581.5:ENST00000531816.1:ENST00000531993.6:ENST00000490541.6:ENST00000372362.6:ENST00000531451.5:ENST00000646416.1:ENST00000645117.1:ENST00000533933.6:ENST00000332628.11:ENST00000643813.1:ENST00000644922.1:ENST00000644287.1:ENST00000647503.1:ENST00000461375.2:ENST00000642780.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.83755	4.861610000000001	4.88567	0.06646	0.0146126	0.162385	0.0837727
chr1	145793654	145793753	578410	0	-	0.474747	(0.45,0.485]	chr1	66337	43	INTRON	INTRON	RNF115	ENSG00000265491.5	ENST00000582693.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.83755	4.861610000000001	4.88567	0.06646	0.0146126	0.162385	0.0837727
chr11	71069458	71069558	5064988	0	-	0.47	(0.45,0.485]	chr11	492754	125	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000618363.4:ENST00000458632.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	44	2	4.83755	4.861610000000001	4.88567	0.06646	0.0146126	0.162385	0.0837727
chr14	93057310	93057409	6043105	0	-	0.484848	(0.45,0.485]	chr14	592713	205	INTRON	INTRON	ITPK1	ENSG00000100605.17	ENST00000267615.11:ENST00000354313.7:ENST00000556603.6:ENST00000555495.5:ENST00000554999.5:ENST00000556185.5:ENST00000555553.5:ENST00000557309.1:ENST00000553452.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.83755	4.861610000000001	4.88567	0.06646	0.0146126	0.162385	0.0837727
chr2	164683066	164683165	1297930	0	-	0.343434	(0.33,0.36]	chr2	139182	30	UTR3	UTR3:EXON_MRNA:INTRON	COBLL1	ENSG00000082438.18	ENST00000495084.1:ENST00000652658.2:ENST00000375458.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	103	2	4.18348	4.86157	5.53966	0.0251076	0.00172571	0.107672	0.0208328
chr15	70097782	70097880	6312703	0	-	0.581633	(0.58,1]	chr15	622362	11	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	TLE3	ENSG00000140332.18	ENST00000558939.5:ENST00000451782.7:ENST00000317509.12:ENST00000561453.5:ENST00000557997.5:ENST00000559191.5:ENST00000559574.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	106	2	3.5406	4.86155	6.1825	0.0154024	2.66047e-4	0.0849828	0.00556524
chr5	1464335	1464430	2609366	0	-	0.652632	(0.58,1]	chr5	259790	1	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000503252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	123	2	4.26426	4.86149	5.45872	0.00360545	0.00211999	0.0385302	0.0239744
chr20	49634231	49634330	7575366	0	-	0.494949	(0.485,0.523]	chr20	791483	14	UTR3	UTR3:EXON_MRNA	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	4	409	2	4.4421	4.8610299999999995	5.27996	7.63669e-4	8.93805e-5	0.0163574	0.002514
chr1	23393778	23393878	424253	0	-	0.62	(0.58,1]	chr1	49809	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TCEA3	ENSG00000204219.11	ENST00000450454.7:ENST00000476978.2	protein_coding	protein_coding	protein_coding	protein_coding	1	89	2	3.82654	4.860975	5.89541	0.0066708	0.00275362	0.0540577	0.0285628
chr17	72529623	72529722	6963603	0	-	0.40404	(0.39,0.419]	chr17	710377	27	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	106	2	4.23104	4.86096	5.49088	0.0309972	0.0016534	0.119758	0.0202545
chr15	41482075	41482174	6084609	0	+	0.373737	(0.36,0.39]	chr15	598327	15	UTR3	UTR3:EXON_MRNA	RTF1	ENSG00000137815.15	ENST00000389629.9	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.56076	4.860905000000001	5.16105	0.103289	0.00993384	0.197541	0.0666221
chr4	39943052	39943151	2218810	0	-	0.383838	(0.36,0.39]	chr4	224238	145	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.56076	4.860905000000001	5.16105	0.103289	0.00993384	0.197541	0.0666221
chr14	104889858	104889958	5926124	0	+	0.51	(0.485,0.523]	chr14	579998	1	SS5_PROX	SS5_PROX:INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.75939	4.8608899999999995	4.96239	0.0518747	0.0172254	0.148503	0.0923809
chr16	85431018	85431118	6517381	0	+	0.52	(0.485,0.523]	chr16	646391	717	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.75939	4.8608899999999995	4.96239	0.0518747	0.0172254	0.148503	0.0923809
chr5	59892867	59892967	2673070	0	-	0.52	(0.485,0.523]	chr5	264373	3	SS5_PROX	SS5_PROX:INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000502484.6:ENST00000405053.7:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	44	2	4.75939	4.8608899999999995	4.96239	0.0518747	0.0172254	0.148503	0.0923809
chrX	1396500	1396574	7830125	0	+	0.594595	(0.58,1]	chrX	822049	2	EXON_LNCRNA	EXON_LNCRNA	LINC00106	ENSG00000236871.7	ENST00000434938.7	lncRNA	lncRNA	lncRNA	lncRNA	3	297	2	4.61836	4.860844999999999	5.10333	5.62789e-4	5.80112e-5	0.013871	0.00182637
chr8	9770854	9770946	3754884	0	+	0.391304	(0.39,0.419]	chr8	360881	2	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	2	171	2	3.13755	4.860775	6.584	0.023697	3.12789e-4	0.105175	0.00625974
chr1	42177628	42177727	454946	0	-	0.494949	(0.485,0.523]	chr1	54686	12	UTR3	UTR3:EXON_MRNA	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000372571.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6	protein_coding	protein_coding	protein_coding	protein_coding	2	129	2	3.40934	4.86074	6.31214	0.00589975	0.00351152	0.0506158	0.0339498
chr10	28677973	28678073	4470343	0	+	0.76	(0.58,1]	chr10	427718	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	BAMBI	ENSG00000095739.11	ENST00000497699.1:ENST00000375533.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.76284	4.86049	4.95814	0.0471737	0.0074469	0.143232	0.0553519
chr14	91220142	91220242	5899557	0	+	0.65	(0.58,1]	chr14	576432	3	SS3_PROX	SS3_PROX:INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000522816.1:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.76284	4.86049	4.95814	0.0471737	0.0074469	0.143232	0.0553519
chr17	81075069	81075168	6813771	0	+	0.59596	(0.58,1]	chr17	688114	109	INTRON	INTRON	BAIAP2	ENSG00000175866.16	ENST00000321280.11:ENST00000576470.5:ENST00000575750.5:ENST00000428708.7:ENST00000572329.5:ENST00000575989.5:ENST00000570913.5:ENST00000575712.5:ENST00000575245.5:ENST00000321300.10:ENST00000435091.7:ENST00000573894.5:ENST00000571530.5:ENST00000572918.5:ENST00000573017.5:ENST00000575958.5:ENST00000573659.5:ENST00000572073.5:ENST00000573677.5:ENST00000574804.5:ENST00000576364.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.76284	4.86049	4.95814	0.0471737	0.0074469	0.143232	0.0553519
chr20	36858973	36859073	7557091	0	-	0.59	(0.58,1]	chr20	789155	192	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.76284	4.86049	4.95814	0.0471737	0.0074469	0.143232	0.0553519
chr3	13057315	13057415	1689712	0	-	0.59	(0.58,1]	chr3	176555	43	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.76284	4.86049	4.95814	0.0471737	0.0074469	0.143232	0.0553519
chr9	134334045	134334145	4260763	0	+	0.63	(0.58,1]	chr9	406311	70	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.76284	4.86049	4.95814	0.0471737	0.0074469	0.143232	0.0553519
chr16	81668064	81668162	6509987	0	+	0.489796	(0.485,0.523]	chr16	645961	9	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	2	131	2	3.16723	4.86048	6.55373	0.00653736	0.00378829	0.0507851	0.0396337
chr4	39719850	39719950	2035646	0	+	0.35	(0.33,0.36]	chr4	207881	211	INTRON	INTRON	UBE2K	ENSG00000078140.14	ENST00000510934.5:ENST00000261427.10:ENST00000438068.6:ENST00000513231.5:ENST00000503368.5:ENST00000445950.2:ENST00000510719.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.49572	4.8601	5.22448	0.103264	0.00791583	0.197541	0.057762
chr15	56179603	56179703	6274849	0	-	0.37	(0.36,0.39]	chr15	618437	3	SS3_PROX	SS3_PROX:INTRON	RFX7	ENSG00000181827.16	ENST00000674082.1:ENST00000559447.8:ENST00000673997.1:ENST00000673948.1:ENST00000560792.4	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.72331	4.860015	4.99672	0.0604395	0.0236929	0.158506	0.111208
chr2	86760837	86760936	846253	0	+	0.363636	(0.36,0.39]	chr2	95479	69	INTRON	INTRON	RMND5A	ENSG00000153561.13	ENST00000283632.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.72331	4.860015	4.99672	0.0604395	0.0236929	0.158506	0.111208
chr3	59988481	59988581	1793487	0	-	0.37	(0.36,0.39]	chr3	186785	657	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000466788.1:ENST00000468189.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.72331	4.860015	4.99672	0.0604395	0.0236929	0.158506	0.111208
chr12	122275627	122275725	5529735	0	-	0.428571	(0.419,0.45]	chr12	545009	16	EXON_MRNA	EXON_MRNA:INTRON	CLIP1	ENSG00000130779.22	ENST00000361654.8:ENST00000358808.6:ENST00000302528.11:ENST00000545889.6:ENST00000620786.5:ENST00000537178.5:ENST00000501271.2:ENST00000536634.6:ENST00000648993.1:ENST00000540539.5:ENST00000538120.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.62273	4.859954999999999	5.09718	0.103601	0.012235	0.197541	0.0757339
chr22	35849383	35849483	7804032	0	-	0.42	(0.419,0.45]	chr22	817785	89	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000359369.8:ENST00000695807.1:ENST00000408983.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.62273	4.859954999999999	5.09718	0.103601	0.012235	0.197541	0.0757339
chr3	6493036	6493135	1399367	0	+	0.40404	(0.39,0.419]	chr3	149923	17	INTRON	INTRON	ENSG00000189229	ENSG00000189229.12	ENST00000660158.1:ENST00000433639.1:ENST00000655754.1:ENST00000653839.1:ENST00000662846.1:ENST00000659876.1:ENST00000414438.2:ENST00000658468.1:ENST00000414603.1	lncRNA	lncRNA	lncRNA	lncRNA	0	45	2	4.55943	4.859954999999999	5.16048	0.104562	0.00999413	0.19835	0.0667545
chrX	44924584	44924684	7872187	0	+	0.46	(0.45,0.485]	chrX	825082	502	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	262	2	4.58109	4.859895	5.1387	0.0034512	1.03499e-4	0.037649	0.00280721
chr10	116726226	116726326	4766139	0	-	0.46	(0.45,0.485]	chr10	455790	181	INTRON	INTRON	HSPA12A	ENSG00000165868.16	ENST00000635765.1:ENST00000369209.8:ENST00000674197.1:ENST00000674401.1:ENST00000674505.1:ENST00000674167.1:ENST00000674205.1:ENST00000674394.1:ENST00000674347.1:ENST00000674459.1:ENST00000674344.1:ENST00000674491.1:ENST00000674372.1:ENST00000674375.1:ENST00000481291.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.41963	4.85968	5.29973	0.0355247	0.035042	0.137983	0.12704
chr2	3459050	3459139	711023	0	+	0.516854	(0.485,0.523]	chr2	83176	2	INTRON	INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000479955.5:ENST00000497597.5:ENST00000473348.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	155	2	3.14709	4.859615	6.57214	0.00392018	0.0036605	0.0389784	0.0366152
chr16	81645981	81646081	6509759	0	+	0.42	(0.419,0.45]	chr16	645931	2	SS5_PROX	SS5_PROX:INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8:ENST00000564666.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	127	2	3.56008	4.85944	6.1588	0.0250979	0.00107628	0.107672	0.0148869
chr13	46577602	46577702	5584150	0	+	0.37	(0.36,0.39]	chr13	550714	235	INTRON	INTRON	LRCH1	ENSG00000136141.15	ENST00000311191.10:ENST00000389797.8:ENST00000443945.6:ENST00000389798.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.56926	4.85942	5.14958	0.0493212	0.031369	0.146207	0.127822
chr1	31937254	31937354	437546	0	-	0.45	(0.419,0.45]	chr1	52119	1	SS5_PROX	SS5_PROX:INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.78575	4.859325	4.9329	0.0716557	0.0224633	0.168159	0.108193
chr7	78243226	78243326	3614390	0	-	0.43	(0.419,0.45]	chr7	349083	417	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000628980.2:ENST00000419488.5:ENST00000629359.2:ENST00000535697.5:ENST00000637441.1:ENST00000626691.2:ENST00000522391.3:ENST00000637282.1:ENST00000637486.1:ENST00000519748.5:ENST00000636178.1:ENST00000520379.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	4.78575	4.859325	4.9329	0.0716557	0.0224633	0.168159	0.108193
chr6	34596882	34596981	3124275	0	-	0.464646	(0.45,0.485]	chr6	304704	59	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	1	128	2	3.92656	4.859235	5.79191	0.0114063	0.00183113	0.0723462	0.0216571
chr10	79292962	79293062	4534298	0	+	0.67	(0.58,1]	chr10	432487	2	SS3_PROX	SS3_PROX:INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10:ENST00000478357.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.6951	4.85912	5.02314	0.0521567	0.00638322	0.148503	0.0501889
chr10	131917289	131917389	4616189	0	+	0.59	(0.58,1]	chr10	441069	43	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.6951	4.85912	5.02314	0.0521567	0.00638322	0.148503	0.0501889
chr19	1168293	1168393	7305735	0	-	0.65	(0.58,1]	chr19	753055	2	SS5_PROX	SS5_PROX:INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5:ENST00000587655.2	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.6951	4.85912	5.02314	0.0521567	0.00638322	0.148503	0.0501889
chr7	207503	207602	3305729	0	+	0.686869	(0.58,1]	chr7	320155	101	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6:ENST00000477004.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.6951	4.85912	5.02314	0.0521567	0.00638322	0.148503	0.0501889
chr7	242501	242601	3306080	0	+	0.71	(0.58,1]	chr7	320161	332	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.6951	4.85912	5.02314	0.0521567	0.00638322	0.148503	0.0501889
chr7	4770943	4771042	3310238	0	+	0.40404	(0.39,0.419]	chr7	320850	86	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.72276	4.85907	4.99538	0.0613573	0.0238104	0.158506	0.111436
chr8	38771191	38771291	3802267	0	+	0.54	(0.523,0.58]	chr8	365828	134	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	155	2	3.02348	4.8589649999999995	6.69445	0.00532616	0.00293287	0.0446495	0.0343709
chr2	165892080	165892180	1300573	0	-	0.36	(0.33,0.36]	chr2	139463	12	UTR3	UTR3:EXON_MRNA:INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681167.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000680925.1:ENST00000679840.1:ENST00000680448.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.65869	4.858945	5.0592	0.0504445	0.0248983	0.148216	0.114418
chr4	185261154	185261253	2171507	0	+	0.353535	(0.33,0.36]	chr4	219954	17	INTRON	INTRON	SNX25	ENSG00000109762.17	ENST00000504273.5:ENST00000618785.4:ENST00000652585.2:ENST00000264694.13:ENST00000506896.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.65869	4.858945	5.0592	0.0504445	0.0248983	0.148216	0.114418
chr20	57398228	57398328	7496757	0	+	0.62	(0.58,1]	chr20	781791	45	INTRON	INTRON	RBM38	ENSG00000132819.17	ENST00000356208.10:ENST00000440234.6:ENST00000342690.4:ENST00000344785.10:ENST00000371219.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	89	2	3.79235	4.858815	5.92528	0.0062948	0.00302484	0.0523832	0.0305643
chr16	1726561	1726659	6371201	0	+	0.602041	(0.58,1]	chr16	628837	15	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000685565.1:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	42	2	4.82753	4.8588000000000005	4.89007	0.0427798	0.00872525	0.13762	0.0612699
chr19	1167893	1167993	7305731	0	-	0.62	(0.58,1]	chr19	753054	129	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5:ENST00000587655.2	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.82753	4.8588000000000005	4.89007	0.0427798	0.00872525	0.13762	0.0612699
chr22	19823871	19823971	7764466	0	-	0.65	(0.58,1]	chr22	813913	21	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.82753	4.8588000000000005	4.89007	0.0427798	0.00872525	0.13762	0.0612699
chr6	36679973	36680073	2906389	0	+	0.78	(0.58,1]	chr6	285236	1	SS3_PROX	SS3_PROX:INTRON	CDKN1A	ENSG00000124762.14	ENST00000615513.4:ENST00000448526.6:ENST00000459970.1:ENST00000405375.5:ENST00000244741.10:ENST00000373711.3:ENST00000478800.1:ENST00000462537.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.82753	4.8588000000000005	4.89007	0.0427798	0.00872525	0.13762	0.0612699
chr17	72526659	72526753	6963573	0	-	0.393617	(0.39,0.419]	chr17	710376	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1:ENST00000650510.1	lncRNA	lncRNA	lncRNA	lncRNA	1	105	2	4.18907	4.85879	5.52851	0.029339	0.00184231	0.116079	0.0217471
chr6	7165570	7165670	2838657	0	+	0.47	(0.45,0.485]	chr6	277928	244	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.50852	4.85879	5.20906	0.0399616	0.0302873	0.133954	0.126768
chr6	7110399	7110499	2838103	0	+	0.4	(0.39,0.419]	chr6	277918	13	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	279	2	4.71781	4.858264999999999	4.99872	0.00320804	2.04553e-4	0.0362105	0.00460754
chr6	154747912	154748012	3044257	0	+	0.32	(0.29,0.33]	chr6	296626	55	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	252	2	4.4398	4.8579799999999995	5.27616	0.00374266	6.21332e-5	0.0393941	0.00192539
chr1	1719080	1719165	382899	0	-	0.482353	(0.45,0.485]	chr1	43595	4	SS5_PROX	SS5_PROX:INTRON	CDK11A:ENSG00000268575	ENSG00000008128.23:ENSG00000268575.1	ENST00000404249.8:ENST00000356200.7:ENST00000598846.1:ENST00000357760.6:ENST00000358779.9:ENST00000378633.5:ENST00000460465.5:ENST00000509982.5:ENST00000378638.6:ENST00000356937.7:ENST00000479362.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	0	44	2	4.64346	4.85783	5.0722	0.0850039	0.00988295	0.181766	0.0664239
chr11	70702462	70702562	5061305	0	-	0.47	(0.45,0.485]	chr11	492696	33	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.64346	4.85783	5.0722	0.0850039	0.00988295	0.181766	0.0664239
chr17	9414218	9414318	6853393	0	-	0.47	(0.45,0.485]	chr17	694499	352	INTRON	INTRON	STX8	ENSG00000170310.15	ENST00000306357.9:ENST00000575858.5:ENST00000570583.5:ENST00000574431.5:ENST00000575294.6:ENST00000574775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.64346	4.85783	5.0722	0.0850039	0.00988295	0.181766	0.0664239
chr22	24303733	24303828	7696504	0	+	0.452632	(0.45,0.485]	chr22	805634	10	INTRON	INTRON	SPECC1L:SPECC1L-ADORA2A	ENSG00000100014.20:ENSG00000258555.6	ENST00000437398.5:ENST00000421374.5:ENST00000314328.14:ENST00000651059.1:ENST00000541492.1:ENST00000416735.5:ENST00000358654.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.64346	4.85783	5.0722	0.0850039	0.00988295	0.181766	0.0664239
chr3	51666984	51667083	1472210	0	+	0.484848	(0.45,0.485]	chr3	157989	37	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.64346	4.85783	5.0722	0.0850039	0.00988295	0.181766	0.0664239
chrX	9493094	9493194	7842725	0	+	0.46	(0.45,0.485]	chrX	822398	273	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.64346	4.85783	5.0722	0.0850039	0.00988295	0.181766	0.0664239
chr4	10102703	10102801	2195677	0	-	0.612245	(0.58,1]	chr4	222412	32	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	106	2	3.3216	4.8577449999999995	6.39389	0.0230709	1.38027e-4	0.102982	0.00347229
chr14	89336953	89337053	6027472	0	-	0.35	(0.33,0.36]	chr14	591456	33	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	161	2	3.01489	4.857735	6.70058	0.00632011	0.00354175	0.0501889	0.0382067
chr3	129595987	129596086	1912190	0	-	0.494949	(0.485,0.523]	chr3	194387	61	INTRON	INTRON	PLXND1	ENSG00000004399.13	ENST00000324093.9	protein_coding	protein_coding	protein_coding	protein_coding	1	128	2	4.02059	4.85768	5.69477	0.0088843599999999991	0.00203227	0.0635397	0.0232814
chr9	724979	725078	4104671	0	+	0.424242	(0.419,0.45]	chr9	390844	109	INTRON	INTRON	KANK1	ENSG00000107104.21	ENST00000382303.5:ENST00000691319.1:ENST00000382297.7:ENST00000674102.1:ENST00000689926.1:ENST00000489369.5:ENST00000619269.5:ENST00000689779.1:ENST00000692130.1:ENST00000354485.5:ENST00000685947.1:ENST00000382289.7:ENST00000690372.1:ENST00000693656.1:ENST00000687796.1:ENST00000685481.1:ENST00000382286.3:ENST00000692757.1:ENST00000690348.1:ENST00000688039.1:ENST00000692345.1:ENST00000685380.1:ENST00000689214.1:ENST00000691645.1:ENST00000693143.1:ENST00000685590.1:ENST00000693021.1:ENST00000687662.1:ENST00000693088.1:ENST00000688567.1:ENST00000686846.1:ENST00000382293.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	135	2	3.88645	4.8574649999999995	5.82848	0.0149102	0.00242141	0.083462	0.0261589
chr3	72400319	72400419	1831593	0	-	0.46	(0.45,0.485]	chr3	188303	198	INTRON	INTRON	RYBP	ENSG00000163602.12	ENST00000477973.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.81772	4.857284999999999	4.89685	0.0614781	0.0167663	0.158506	0.0917029
chr7	66151620	66151707	3379514	0	+	0.45977	(0.45,0.485]	chr7	326211	3	INTRON	INTRON	CRCP	ENSG00000241258.7	ENST00000360415.7:ENST00000431089.6:ENST00000398684.6:ENST00000395326.8:ENST00000338592.5:ENST00000492264.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.81772	4.857284999999999	4.89685	0.0614781	0.0167663	0.158506	0.0917029
chr19	944314	944414	7185289	0	+	0.65	(0.58,1]	chr19	730741	112	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	1184	2	4.73412	4.85724	4.98036	7.57212e-5	5.11289e-6	0.00485974	3.21345e-4
chr3	111750489	111750588	1534455	0	+	0.414141	(0.39,0.419]	chr3	162941	174	INTRON	INTRON	PLCXD2:PHLDB2	ENSG00000240891.8:ENSG00000144824.21	ENST00000393934.7:ENST00000477665.2:ENST00000474484.1:ENST00000393923.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.30157	4.857055	5.41254	0.0496288	0.0347088	0.160725	0.12648
chr4	185356081	185356180	2172472	0	+	0.575758	(0.523,0.58]	chr4	220033	21	INTRON	INTRON	SNX25	ENSG00000109762.17	ENST00000504273.5:ENST00000618785.4:ENST00000652585.2:ENST00000264694.13:ENST00000512853.5:ENST00000504959.5:ENST00000513433.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	102	2	3.31719	4.857	6.39681	0.0124719	0.00509616	0.0765738	0.0467496
chr7	47478903	47479003	3588597	0	-	0.5	(0.485,0.523]	chr7	346123	258	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	2	159	2	3.0328	4.856785	6.68077	0.0239561	1.33825e-4	0.106076	0.00338739
chr12	3226246	3226346	5160039	0	+	0.43	(0.419,0.45]	chr12	501358	105	INTRON	INTRON	TSPAN9	ENSG00000011105.14	ENST00000537971.5:ENST00000444315.6:ENST00000011898.10:ENST00000649909.1:ENST00000640568.1:ENST00000407263.2:ENST00000431374.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	51	2	4.19215	4.85644	5.52073	0.0617113	0.0327198	0.18013	0.122543
chr20	41044725	41044825	7478592	0	+	0.45	(0.419,0.45]	chr20	778843	149	INTRON	INTRON	TOP1	ENSG00000198900.7	ENST00000361337.3:ENST00000681113.1:ENST00000681058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	288	2	4.76757	4.85632	4.94507	0.0032832	2.61255e-4	0.0367517	0.00551565
chr5	1103007	1103107	2608881	0	-	0.6	(0.58,1]	chr5	259667	84	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	3.56821	4.85624	6.14427	0.00550024	0.00407804	0.0454065	0.0413652
chr10	96145541	96145640	4560243	0	+	0.393939	(0.39,0.419]	chr10	435112	99	INTRON	INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	142	2	3.7953	4.85611	5.91692	0.0162442	0.00160854	0.0873195	0.0198638
chr22	50710519	50710618	7755290	0	+	0.535354	(0.523,0.58]	chr22	812777	40	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	100	2	3.4003	4.856005	6.31171	0.0103016	0.00594629	0.0678983	0.0506158
chr16	8682160	8682260	6381211	0	+	0.45	(0.419,0.45]	chr16	631145	71	INTRON	INTRON	ABAT	ENSG00000183044.12	ENST00000564714.5:ENST00000268251.13:ENST00000563992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	141	2	3.6674	4.855905	6.04441	0.0149622	0.00238608	0.0835955	0.0260605
chr10	75709457	75709557	4523258	0	+	0.43	(0.419,0.45]	chr10	432271	615	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	294	2	4.07361	4.855865	5.63812	0.0109421	3.57919e-5	0.0708586	0.00128261
chr17	60521308	60521408	6939677	0	-	0.34	(0.33,0.36]	chr17	707541	205	INTRON	INTRON	APPBP2	ENSG00000062725.10	ENST00000083182.8:ENST00000589341.5:ENST00000590244.1:ENST00000588668.5:ENST00000585368.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.77355	4.85566	4.93777	0.0735809	0.0144674	0.17026	0.0833845
chr17	46436156	46436256	6744027	0	+	0.48	(0.45,0.485]	chr17	679254	101	INTRON	INTRON	NSFP1	ENSG00000260075.1	ENST00000570034.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	98	2	3.96198	4.855555	5.74913	0.017574	0.00281669	0.0906595	0.0291091
chr21	34894862	34894962	7655900	0	-	0.43	(0.419,0.45]	chr21	801067	15	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000482318.5:ENST00000455571.5:ENST00000475045.6:ENST00000416754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	47	2	4.47684	4.855455	5.23407	0.0486006	0.0389508	0.145074	0.142578
chr3	12302639	12302736	1412003	0	+	0.42268	(0.419,0.45]	chr3	151507	4	INTRON	INTRON	PPARG	ENSG00000132170.24	ENST00000397010.7:ENST00000397029.8:ENST00000309576.11:ENST00000681966.1:ENST00000397015.7:ENST00000643888.2:ENST00000643197.2:ENST00000644622.2:ENST00000455517.6:ENST00000681982.1:ENST00000652098.1:ENST00000652431.1:ENST00000652522.1:ENST00000651735.1:ENST00000397026.7:ENST00000497594.5:ENST00000682446.1:ENST00000683586.1:ENST00000684065.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	47	2	4.47684	4.855455	5.23407	0.0486006	0.0389508	0.145074	0.142578
chr5	35083075	35083174	2635353	0	-	0.434343	(0.419,0.45]	chr5	261485	100	INTRON	INTRON	PRLR	ENSG00000113494.17	ENST00000231423.7:ENST00000513753.5:ENST00000514088.5:ENST00000542609.5:ENST00000509140.5:ENST00000397391.7:ENST00000348262.7:ENST00000618625.4:ENST00000620785.4:ENST00000618457.5:ENST00000508107.5:ENST00000619676.4:ENST00000511486.5:ENST00000310101.9:ENST00000509934.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.47684	4.855455	5.23407	0.0486006	0.0389508	0.145074	0.142578
chr13	50518781	50518881	5597811	0	+	0.51	(0.485,0.523]	chr13	551677	60	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000485007.5:ENST00000470726.7:ENST00000479420.5:ENST00000474630.6:ENST00000491482.5:ENST00000647700.1:ENST00000484869.6:ENST00000469095.6:ENST00000462427.2:ENST00000470593.5:ENST00000460525.6	lncRNA	lncRNA	lncRNA	lncRNA	0	49	2	4.23628	4.855264999999999	5.47425	0.045492200000000003	0.0243396	0.154539	0.106588
chr2	165938064	165938163	1301064	0	-	0.363636	(0.36,0.39]	chr2	139566	5	INTRON	INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000679840.1:ENST00000680448.1:ENST00000681606.1:ENST00000679671.1:ENST00000464374.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	193	2	3.2731	4.8550699999999996	6.43704	0.00676148	0.00246685	0.0544904	0.0266104
chr6	147320483	147320583	3028057	0	+	0.47	(0.45,0.485]	chr6	295783	37	INTRON	INTRON	STXBP5	ENSG00000164506.15	ENST00000321680.11:ENST00000367481.7:ENST00000367480.7	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.32491	4.85497	5.38503	0.0418883	0.0308908	0.149021	0.119556
chr2	160464029	160464129	1293191	0	-	0.46	(0.45,0.485]	chr2	138809	312	INTRON	INTRON	RBMS1	ENSG00000153250.21	ENST00000348849.8:ENST00000474820.5:ENST00000491781.5:ENST00000477486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	163	2	3.08125	4.85477	6.62829	0.0234805	1.90839e-4	0.104385	0.0043642
chr1	9294794	9294894	19602	0	+	0.67	(0.58,1]	chr1	2204	2	SS5_PROX	SS5_PROX:INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11:ENST00000450402.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.62403	4.854685	5.08534	0.0578275	0.00549379	0.154343	0.0454065
chr9	135839658	135839758	4431143	0	-	0.63	(0.58,1]	chr9	423507	117	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.62403	4.854685	5.08534	0.0578275	0.00549379	0.154343	0.0454065
chr2	152605238	152605338	928171	0	+	0.53	(0.523,0.58]	chr2	103106	238	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14:ENST00000492942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	116	2	3.4477	4.8544149999999995	6.26113	0.0242383	4.27166e-4	0.106588	0.00779962
chr10	116882965	116883065	4767407	0	-	0.34	(0.33,0.36]	chr10	455830	16	UTR3	UTR3:EXON_MRNA	SHTN1	ENSG00000187164.20	ENST00000355371.9:ENST00000615301.4	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.70894	4.854395	4.99985	0.0798152	0.0127452	0.176933	0.0773423
chr7	111461353	111461452	3686682	0	-	0.333333	(0.33,0.36]	chr7	354630	686	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000452895.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.70894	4.854395	4.99985	0.0798152	0.0127452	0.176933	0.0773423
chr10	24467883	24467981	4467193	0	+	0.357143	(0.33,0.36]	chr10	427290	7	INTRON	INTRON	KIAA1217	ENSG00000120549.19	ENST00000376462.5:ENST00000376452.7:ENST00000430453.6:ENST00000458595.5:ENST00000376456.8:ENST00000376454.8:ENST00000438429.5:ENST00000696626.1:ENST00000307544.10:ENST00000376451.4:ENST00000396445.5:ENST00000396446.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.83538	4.854139999999999	4.8729	0.0679743	0.0164782	0.164413	0.091341
chr1	1032712	1032811	1042	0	+	0.626263	(0.58,1]	chr1	166	99	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.81862	4.854035	4.88945	0.0388928	0.0102696	0.131324	0.0678072
chr11	70744582	70744682	5061727	0	-	0.64	(0.58,1]	chr11	492701	267	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.81862	4.854035	4.88945	0.0388928	0.0102696	0.131324	0.0678072
chr17	77351998	77352098	6803879	0	+	0.63	(0.58,1]	chr17	686742	278	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.81862	4.854035	4.88945	0.0388928	0.0102696	0.131324	0.0678072
chr2	239308786	239308886	1391797	0	-	0.59	(0.58,1]	chr2	148745	3	SS5_PROX	SS5_PROX:INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	42	2	4.81862	4.854035	4.88945	0.0388928	0.0102696	0.131324	0.0678072
chr4	6300256	6300356	2010604	0	+	0.63	(0.58,1]	chr4	205142	2	SS3_PROX	SS3_PROX:INTRON	WFS1	ENSG00000109501.15	ENST00000673991.1:ENST00000503569.5:ENST00000226760.5:ENST00000682275.1:ENST00000506362.2:ENST00000684087.1:ENST00000683395.1:ENST00000673642.1:ENST00000507765.1:ENST00000513395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.81862	4.854035	4.88945	0.0388928	0.0102696	0.131324	0.0678072
chr7	2046912	2047012	3530701	0	-	0.6	(0.58,1]	chr7	340995	319	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.81862	4.854035	4.88945	0.0388928	0.0102696	0.131324	0.0678072
chr8	143488346	143488446	4096476	0	-	0.6	(0.58,1]	chr8	389272	30	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6:ENST00000528401.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.81862	4.854035	4.88945	0.0388928	0.0102696	0.131324	0.0678072
chr18	59333601	59333691	7171538	0	-	0.422222	(0.419,0.45]	chr18	729070	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	LMAN1	ENSG00000074695.6	ENST00000251047.6:ENST00000587918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	102	2	3.74317	4.853960000000001	5.96475	0.0169309	0.00581478	0.088829	0.047264
chr19	33422134	33422234	7365059	0	-	0.56	(0.523,0.58]	chr19	763415	81	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000590731.6:ENST00000609145.5:ENST00000588719.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	96	2	4.01555	4.85356	5.69157	0.0172851	0.00221587	0.0897247	0.0247044
chr7	220351	220451	3305858	0	+	0.57	(0.523,0.58]	chr7	320161	110	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.50593	4.853485	5.20104	0.094303	0.00648051	0.188571	0.0503748
chr3	187067699	187067799	1651670	0	+	0.46	(0.45,0.485]	chr3	173706	27	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000676633.1:ENST00000448044.5:ENST00000416235.6:ENST00000448449.1:ENST00000442023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	101	2	3.42543	4.853365	6.2813	0.0103881	0.00719875	0.0682598	0.056408
chr9	96610003	96610103	4345539	0	-	0.26	[0,0.29]	chr9	415195	429	INTRON	INTRON	CDC14B	ENSG00000081377.17	ENST00000474602.5:ENST00000412285.6:ENST00000375241.6:ENST00000375240.7:ENST00000463569.5:ENST00000415608.1:ENST00000496750.5:ENST00000463547.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.45163	4.853185	5.25474	0.0278965	0.02298	0.12105	0.102982
chr3	10886993	10887093	1408402	0	+	0.53	(0.523,0.58]	chr3	151278	115	INTRON	INTRON	SLC6A11	ENSG00000132164.10	ENST00000254488.7	protein_coding	protein_coding	protein_coding	protein_coding	2	151	2	4.27222	4.853165000000001	5.43411	0.026041	2.97843e-4	0.109673	0.00604717
chr2	25811231	25811331	1109787	0	-	0.27	[0,0.29]	chr2	121025	45	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000497092.1	protein_coding	protein_coding	protein_coding	protein_coding	1	93	2	3.67385	4.85303	6.03221	0.00561175	0.00495574	0.0493906	0.0425347
chr17	40135741	40135839	6732839	0	+	0.377551	(0.36,0.39]	chr17	677123	15	UTR3	UTR3:EXON_MRNA	MSL1	ENSG00000188895.12	ENST00000398532.9:ENST00000339569.9:ENST00000580086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	106	2	3.30849	4.852685	6.39688	0.0148029	0.00723998	0.0847481	0.0565323
chr7	133821839	133821939	3490863	0	+	0.33	(0.29,0.33]	chr7	336715	39	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.51301	4.852585	5.19216	0.0885563	0.00712176	0.183874	0.0541241
chr16	962149	962249	6531657	0	-	0.59	(0.58,1]	chr16	648714	71	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1:ENST00000566609.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.49116	4.8524650000000005	5.21377	0.0230012	0.0207449	0.102982	0.102713
chr20	62048404	62048504	7583632	0	-	0.65	(0.58,1]	chr20	792369	333	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000252996.9:ENST00000608887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.49116	4.8524650000000005	5.21377	0.0230012	0.0207449	0.102982	0.102713
chr2	163652404	163652504	1295486	0	-	0.25	[0,0.29]	chr2	139073	402	INTRON	INTRON	FIGN	ENSG00000182263.14	ENST00000409634.5:ENST00000333129.4:ENST00000482917.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.54275	4.852365	5.16198	0.0681032	0.00622515	0.164448	0.0496245
chr1	12591606	12591706	402519	0	-	0.57	(0.523,0.58]	chr1	46222	106	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.68785	4.85231	5.01677	0.0482765	0.0194172	0.144601	0.0994526
chr1	65153886	65153985	158509	0	+	0.525253	(0.523,0.58]	chr1	18050	44	INTRON	INTRON	AK4	ENSG00000162433.15	ENST00000545314.5:ENST00000497030.5:ENST00000470888.6:ENST00000546702.5:ENST00000395334.6:ENST00000327299.8:ENST00000474968.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.68785	4.85231	5.01677	0.0482765	0.0194172	0.144601	0.0994526
chr11	70630629	70630729	5060579	0	-	0.56	(0.523,0.58]	chr11	492663	1273	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.68785	4.85231	5.01677	0.0482765	0.0194172	0.144601	0.0994526
chr16	21621055	21621154	6419392	0	+	0.525253	(0.523,0.58]	chr16	634864	26	INTRON	INTRON	METTL9	ENSG00000197006.15	ENST00000567404.5:ENST00000396014.8:ENST00000358154.8:ENST00000562379.1:ENST00000562961.1:ENST00000568826.1:ENST00000569290.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.68785	4.85231	5.01677	0.0482765	0.0194172	0.144601	0.0994526
chr16	48606195	48606294	6587491	0	-	0.565657	(0.523,0.58]	chr16	658491	26	INTRON	INTRON	N4BP1	ENSG00000102921.8	ENST00000262384.4:ENST00000564124.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.68785	4.85231	5.01677	0.0482765	0.0194172	0.144601	0.0994526
chr19	57396163	57396259	7296617	0	+	0.572917	(0.523,0.58]	chr19	751442	16	INTRON	INTRON	ZNF548:ENSG00000268533	ENSG00000188785.12:ENSG00000268533.1	ENST00000366197.9:ENST00000336128.12:ENST00000597400.5:ENST00000596282.5:ENST00000598895.5:ENST00000602086.5:ENST00000597047.1:ENST00000600442.5:ENST00000594693.5:ENST00000594668.5:ENST00000600927.1:ENST00000597410.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.68785	4.85231	5.01677	0.0482765	0.0194172	0.144601	0.0994526
chr9	124895458	124895558	4405599	0	-	0.54	(0.523,0.58]	chr9	419967	46	INTRON	INTRON	GOLGA1	ENSG00000136935.14	ENST00000373555.9:ENST00000475407.5:ENST00000485337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.68785	4.85231	5.01677	0.0482765	0.0194172	0.144601	0.0994526
chr11	12814922	12815022	4803051	0	+	0.47	(0.45,0.485]	chr11	460563	501	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.59225	4.852275000000001	5.1123	0.0458344	0.0259502	0.142336	0.116361
chr12	132511952	132512051	5352733	0	+	0.454545	(0.45,0.485]	chr12	523658	1	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.59225	4.852275000000001	5.1123	0.0458344	0.0259502	0.142336	0.116361
chr9	124491995	124492084	4402643	0	-	0.674157	(0.58,1]	chr9	419811	4	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	2	220	2	4.5431	4.852195	5.16129	0.00197916	4.39806e-5	0.0279351	0.00149886
chr17	72529026	72529125	6963597	0	-	0.323232	(0.29,0.33]	chr17	710377	21	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	2	135	2	3.84588	4.852015	5.85815	0.011855	0.00110683	0.0740271	0.0152193
chr14	100502999	100503099	5911466	0	+	0.52	(0.485,0.523]	chr14	577796	185	INTRON	INTRON	WDR25	ENSG00000176473.14	ENST00000555775.5:ENST00000554998.5:ENST00000402312.8:ENST00000335290.10:ENST00000554492.5:ENST00000557710.5:ENST00000542471.2:ENST00000555865.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.50634	4.851915	5.19749	0.0939553	0.00672953	0.188571	0.0519464
chr9	20620253	20620353	4286615	0	-	0.49	(0.485,0.523]	chr9	409536	2	SS5_PROX	SS5_PROX:INTRON	MLLT3	ENSG00000171843.17	ENST00000380338.9:ENST00000630269.2:ENST00000475957.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.50634	4.851915	5.19749	0.0939553	0.00672953	0.188571	0.0519464
chr3	129172667	129172766	1911314	0	-	0.474747	(0.45,0.485]	chr3	194134	5	INTRON	INTRON	CNBP	ENSG00000169714.17	ENST00000422453.7:ENST00000502976.5:ENST00000451728.6:ENST00000446936.6:ENST00000504813.5:ENST00000500450.6:ENST00000441626.6:ENST00000502372.1:ENST00000512338.1:ENST00000507573.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	197	2	2.80502	4.851905	6.89879	0.0268773	8.68871e-5	0.112113	0.00246367
chr1	1023260	1023359	947	0	+	0.626263	(0.58,1]	chr1	166	4	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.3962	4.851835	5.30747	0.0250928	0.0196049	0.114418	0.0955413
chr11	70747280	70747380	5061754	0	-	0.6	(0.58,1]	chr11	492701	294	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.3962	4.851835	5.30747	0.0250928	0.0196049	0.114418	0.0955413
chr19	1166598	1166697	7305718	0	-	0.50505	(0.485,0.523]	chr19	753054	116	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5:ENST00000587655.2	protein_coding	protein_coding	protein_coding	protein_coding	1	120	2	3.76329	4.8518	5.94031	0.0140831	0.00107389	0.08114	0.0148869
chr2	231041509	231041609	1047539	0	+	0.59	(0.58,1]	chr2	114050	1	SS5_PROX	SS5_PROX:INTRON	C2orf72	ENSG00000204128.6	ENST00000373640.5:ENST00000477463.1:ENST00000463834.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	48	2	4.18518	4.851655	5.51813	0.0374658	0.013519	0.139793	0.0792526
chr3	66499689	66499789	1817111	0	-	0.49	(0.485,0.523]	chr3	187448	1	SS5_PROX	SS5_PROX:INTRON	LRIG1	ENSG00000144749.14	ENST00000273261.8:ENST00000383703.3:ENST00000498287.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	97	2	3.57804	4.851625	6.12521	0.00823189	0.00685872	0.0608959	0.0526888
chr6	98920605	98920705	3207941	0	-	0.3	(0.29,0.33]	chr6	311438	25	INTRON	INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.67908	4.851515	5.02395	0.0445554	0.0209202	0.140478	0.102931
chr2	61388697	61388796	1156869	0	-	0.434343	(0.419,0.45]	chr2	126793	50	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000453133.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.7145	4.851084999999999	4.98767	0.0669167	0.0256236	0.16272	0.115966
chr20	44357549	44357649	7482483	0	+	0.45	(0.419,0.45]	chr20	779618	13	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.7145	4.851084999999999	4.98767	0.0669167	0.0256236	0.16272	0.115966
chr8	65718198	65718297	3987801	0	-	0.353535	(0.33,0.36]	chr8	381575	40	UTR3	UTR3:EXON_MRNA	PDE7A	ENSG00000205268.11	ENST00000401827.8	protein_coding	protein_coding	protein_coding	protein_coding	1	100	2	4.02105	4.85107	5.68109	0.0201622	0.0026239	0.0973366	0.0278348
chr1	93105941	93106040	183981	0	+	0.454545	(0.45,0.485]	chr1	19867	246	INTRON	INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000474314.6:ENST00000370298.9:ENST00000473430.5:ENST00000494963.5:ENST00000471953.5:ENST00000370303.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.5725	4.85094	5.12938	0.0926859	0.00873194	0.188571	0.0612699
chr1	228177992	228178091	358314	0	+	0.464646	(0.45,0.485]	chr1	40459	26	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	IBA57	ENSG00000181873.13	ENST00000366711.4:ENST00000484749.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.5725	4.85094	5.12938	0.0926859	0.00873194	0.188571	0.0612699
chr20	26010952	26011049	7452333	0	+	0.484536	(0.45,0.485]	chr20	775551	13	EXON_LNCRNA	EXON_LNCRNA	ENSG00000287569	ENSG00000287569.1	ENST00000668826.1	lncRNA	lncRNA	lncRNA	lncRNA	0	44	2	4.5725	4.85094	5.12938	0.0926859	0.00873194	0.188571	0.0612699
chr11	70594329	70594429	5060216	0	-	0.51	(0.485,0.523]	chr11	492663	910	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.68434	4.850765	5.01719	0.0480495	0.0200045	0.144601	0.100864
chr14	89322814	89322914	6027329	0	-	0.5	(0.485,0.523]	chr14	591449	379	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.68434	4.850765	5.01719	0.0480495	0.0200045	0.144601	0.100864
chr3	48073381	48073481	1765799	0	-	0.51	(0.485,0.523]	chr3	182011	571	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.68434	4.850765	5.01719	0.0480495	0.0200045	0.144601	0.100864
chr11	70793645	70793745	5062218	0	-	0.42	(0.419,0.45]	chr11	492701	758	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.56048	4.850490000000001	5.1405	0.0550015	0.0337332	0.153337	0.133139
chr4	146266423	146266522	2334078	0	-	0.444444	(0.419,0.45]	chr4	234325	72	INTRON	INTRON	SLC10A7	ENSG00000120519.16	ENST00000432059.6:ENST00000335472.12:ENST00000693222.1:ENST00000507030.5	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.56048	4.850490000000001	5.1405	0.0550015	0.0337332	0.153337	0.133139
chr10	96135589	96135689	4560143	0	+	0.35	(0.33,0.36]	chr10	435111	3	SS5_PROX	SS5_PROX:INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.64131	4.85034	5.05937	0.0867669	0.0112642	0.182221	0.071709
chr2	70511862	70511961	1180931	0	-	0.454545	(0.45,0.485]	chr2	128541	458	INTRON	INTRON	TGFA	ENSG00000163235.16	ENST00000295400.11:ENST00000445399.5:ENST00000418333.6:ENST00000450929.5:ENST00000444975.5:ENST00000394241.3:ENST00000460808.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.74641	4.850105	4.9538	0.0569772	0.0193126	0.154343	0.0994526
chr3	13027093	13027193	1689407	0	-	0.47	(0.45,0.485]	chr3	176542	46	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.74641	4.850105	4.9538	0.0569772	0.0193126	0.154343	0.0994526
chr3	32819931	32820031	1438891	0	+	0.48	(0.45,0.485]	chr3	153401	6	INTRON	INTRON	TRIM71	ENSG00000206557.6	ENST00000383763.6	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.74641	4.850105	4.9538	0.0569772	0.0193126	0.154343	0.0994526
chr5	59131588	59131688	2665431	0	-	0.46	(0.45,0.485]	chr5	264274	401	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000503258.5:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.74641	4.850105	4.9538	0.0569772	0.0193126	0.154343	0.0994526
chr1	8785309	8785408	395410	0	-	0.343434	(0.33,0.36]	chr1	45073	316	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	4	183	2	2.85722	4.85004	6.84286	0.00673597	0.00272744	0.0519937	0.0331786
chr1	44812895	44812995	115032	0	+	0.62	(0.58,1]	chr1	14300	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BTBD19	ENSG00000222009.9	ENST00000450269.6:ENST00000409335.6:ENST00000439563.2:ENST00000485668.5:ENST00000482715.5:ENST00000475105.5:ENST00000495433.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	118	2	3.38782	4.849875	6.31193	0.00289626	0.00277379	0.03418	0.0287134
chr16	81627989	81628089	6509577	0	+	0.62	(0.58,1]	chr16	645926	59	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	1	105	2	3.40767	4.849865	6.29206	0.0197265	1.89825e-4	0.0958249	0.0043642
chr12	79891019	79891119	5463328	0	-	0.36	(0.33,0.36]	chr12	537312	177	INTRON	INTRON	PPP1R12A	ENSG00000058272.19	ENST00000261207.9:ENST00000450142.7:ENST00000437004.6:ENST00000546369.5:ENST00000550107.5:ENST00000547330.5:ENST00000550510.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.80497	4.849825	4.89468	0.0629186	0.0188359	0.160778	0.0980631
chr11	70874120	70874220	5063028	0	-	0.36	(0.33,0.36]	chr11	492728	11	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000645599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	102	2	3.42056	4.84982	6.27908	0.0110831	0.00749528	0.071519	0.0576451
chr20	44403084	44403178	7482945	0	+	0.638298	(0.58,1]	chr20	779642	2	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000682427.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	298	2	4.04407	4.849785	5.6555	0.00222435	7.9562e-6	0.0296718	4.36503e-4
chr16	85521480	85521580	6518286	0	+	0.55	(0.523,0.58]	chr16	646391	1622	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.43597	4.849645000000001	5.26332	0.0337698	0.0313935	0.127822	0.124319
chr17	2066678	2066778	6832610	0	-	0.55	(0.523,0.58]	chr17	691043	6	INTRON	INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11:ENST00000573166.5:ENST00000354901.8:ENST00000570756.5:ENST00000576218.5:ENST00000536871.6:ENST00000573827.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.43597	4.849645000000001	5.26332	0.0337698	0.0313935	0.127822	0.124319
chr22	50676421	50676521	7754928	0	+	0.56	(0.523,0.58]	chr22	812696	4	SS3_PROX	SS3_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	46	2	4.43597	4.849645000000001	5.26332	0.0337698	0.0313935	0.127822	0.124319
chr1	40374708	40374808	100238	0	+	0.42	(0.419,0.45]	chr1	11926	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8:ENST00000372708.5	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.29342	4.849095	5.40477	0.0526662	0.0385125	0.167062	0.131324
chr1	174534143	174534243	281742	0	+	0.35	(0.33,0.36]	chr1	32717	1396	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	99	2	3.91931	4.84903	5.77875	0.0172683	0.00339115	0.0897247	0.0329437
chr10	103718578	103718678	4757286	0	-	0.38	(0.36,0.39]	chr10	454791	251	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	104	2	3.38495	4.848985	6.31302	0.0125396	0.00834137	0.0765784	0.0613342
chr1	176054008	176054108	622708	0	-	0.37	(0.36,0.39]	chr1	73582	73	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000459744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	4.64834	4.848915	5.04949	0.0563927	0.0272056	0.154188	0.119337
chr10	46806510	46806609	4484748	0	+	0.575758	(0.523,0.58]	chr10	428921	42	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000688259.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	95	2	3.87732	4.848855	5.82039	0.0139724	0.00318505	0.0805959	0.0316631
chr2	239085926	239086026	1389534	0	-	0.51	(0.485,0.523]	chr2	148608	1	PRIMIRNA	PRIMIRNA:INTRON	HDAC4:MIR4441	ENSG00000068024.18:ENSG00000264810.1	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000487617.5:ENST00000582623.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	0	46	2	4.43249	4.84812	5.26375	0.0335928	0.0322299	0.12988	0.124319
chr17	4341564	4341663	6842203	0	-	0.474747	(0.45,0.485]	chr17	692473	59	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1:ENST00000574059.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	97	2	3.82378	4.848105	5.87243	0.0143887	0.0039984	0.0821732	0.0370532
chr13	19975868	19975968	5542968	0	+	0.4	(0.39,0.419]	chr13	547198	54	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382881.7:ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000620447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.64779	4.84797	5.04815	0.0572698	0.0273358	0.154343	0.119337
chr20	50113780	50113877	7576517	0	-	0.402062	(0.39,0.419]	chr20	791586	7	INTRON	INTRON	PEDS1-UBE2V1:UBE2V1	ENSG00000124208.16:ENSG00000244687.13	ENST00000341698.2:ENST00000340309.7:ENST00000371677.7:ENST00000415862.6:ENST00000483534.5:ENST00000492371.6:ENST00000462217.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.64779	4.84797	5.04815	0.0572698	0.0273358	0.154343	0.119337
chr8	99229482	99229582	3879376	0	+	0.4	(0.39,0.419]	chr8	371760	361	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1:ENST00000521932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.64779	4.84797	5.04815	0.0572698	0.0273358	0.154343	0.119337
chr11	17910004	17910104	5014337	0	-	0.54	(0.523,0.58]	chr11	484610	314	INTRON	INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528369.5:ENST00000528200.5:ENST00000529440.5:ENST00000529151.5:ENST00000532546.5:ENST00000525920.5:ENST00000532265.5:ENST00000533241.1:ENST00000525168.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	95	2	3.90605	4.847645	5.78924	0.0147166	0.00295607	0.0826843	0.0300958
chr16	87740523	87740623	6656486	0	-	0.58	(0.523,0.58]	chr16	665893	3	SS5_PROX	SS5_PROX:INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	95	2	3.75634	4.8474900000000005	5.93864	0.0114442	0.00434055	0.0723462	0.0390182
chr15	40108436	40108525	6235244	0	-	0.651685	(0.58,1]	chr15	613050	3	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BMF	ENSG00000104081.14	ENST00000354670.9:ENST00000558774.5:ENST00000559701.5:ENST00000557870.1:ENST00000560430.1:ENST00000558057.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	97	2	3.25332	4.847455	6.44159	0.0120565	0.00221069	0.0754623	0.0295736
chr16	89426259	89426359	6661096	0	-	0.46	(0.45,0.485]	chr16	666747	75	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	97	2	3.76457	4.847455	5.93034	0.0130794	0.00463252	0.0782396	0.0408278
chr17	46947173	46947272	6746955	0	+	0.575758	(0.523,0.58]	chr17	679541	53	INTRON	INTRON	GOSR2	ENSG00000108433.17	ENST00000640792.1:ENST00000640358.1:ENST00000573224.2:ENST00000639985.1:ENST00000639199.1:ENST00000639365.1:ENST00000638579.1:ENST00000638189.1:ENST00000639066.1:ENST00000638219.1:ENST00000639388.1:ENST00000572403.5:ENST00000640723.1:ENST00000638468.1:ENST00000639713.1:ENST00000640866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.5249	4.847295	5.16969	0.0387762	0.0266135	0.131324	0.118113
chr22	37493785	37493885	7808118	0	-	0.55	(0.523,0.58]	chr22	818360	3	SS5_PROX	SS5_PROX:INTRON	CARD10	ENSG00000100065.15	ENST00000403299.5:ENST00000251973.10:ENST00000488141.5:ENST00000467812.1:ENST00000406271.7:ENST00000437756.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.5249	4.847295	5.16969	0.0387762	0.0266135	0.131324	0.118113
chr9	88408906	88409006	4177867	0	+	0.57	(0.523,0.58]	chr9	397315	191	INTRON	INTRON	SPIN1	ENSG00000106723.17	ENST00000485804.5:ENST00000469017.6:ENST00000375859.4:ENST00000462844.5:ENST00000485565.6:ENST00000483785.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.5249	4.847295	5.16969	0.0387762	0.0266135	0.131324	0.118113
chr2	138567062	138567160	904550	0	+	0.418367	(0.39,0.419]	chr2	101982	17	INTRON	INTRON	SPOPL	ENSG00000144228.9	ENST00000280098.9:ENST00000420679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	135	2	3.40467	4.84729	6.28991	0.00887176	0.00437979	0.0634853	0.0393058
chr2	232838266	232838364	1056741	0	+	0.387755	(0.36,0.39]	chr2	114952	48	INTRON	INTRON	GIGYF2	ENSG00000204120.16	ENST00000629305.2:ENST00000409480.5:ENST00000373563.9:ENST00000409547.5:ENST00000409196.7:ENST00000409451.7:ENST00000677591.1:ENST00000678230.1:ENST00000678339.1:ENST00000677450.1:ENST00000678466.1:ENST00000678885.1:ENST00000676848.1:ENST00000474312.5:ENST00000469843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	102	2	4.05723	4.847215	5.6372	0.024533	0.00256597	0.106796	0.0274214
chr10	80502437	80502537	4535604	0	+	0.61	(0.58,1]	chr10	432713	128	INTRON	INTRON	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000481124.5:ENST00000372158.6:ENST00000372157.6:ENST00000469149.1:ENST00000372164.7:ENST00000341863.10:ENST00000372156.5:ENST00000616406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.54927	4.84712	5.14497	0.0643046	0.00474658	0.161669	0.0413976
chr10	18563263	18563363	4642361	0	-	0.37	(0.36,0.39]	chr10	443321	109	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.09186	4.84708	5.6023	0.0687088	0.0258522	0.193274	0.109555
chr1	27343372	27343472	71338	0	+	0.69	(0.58,1]	chr1	8036	1	SS5_PROX	SS5_PROX:INTRON	SYTL1	ENSG00000142765.18	ENST00000618673.4:ENST00000318074.9:ENST00000616558.5:ENST00000483926.5:ENST00000473280.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.58025	4.8469	5.11355	0.0271806	0.0172566	0.112113	0.0923809
chr17	17568186	17568285	6865355	0	-	0.636364	(0.58,1]	chr17	695822	25	INTRON	INTRON	PEMT	ENSG00000133027.18	ENST00000255389.10:ENST00000435340.6:ENST00000395783.5:ENST00000395782.5:ENST00000395781.6:ENST00000580147.5:ENST00000421096.5:ENST00000472446.1:ENST00000461404.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.58025	4.8469	5.11355	0.0271806	0.0172566	0.112113	0.0923809
chr17	17725158	17725258	6689287	0	+	0.67	(0.58,1]	chr17	671344	6	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.58025	4.8469	5.11355	0.0271806	0.0172566	0.112113	0.0923809
chr18	3005528	3005628	7106757	0	-	0.59	(0.58,1]	chr18	723735	228	INTRON	INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.58025	4.8469	5.11355	0.0271806	0.0172566	0.112113	0.0923809
chr21	8798717	8798817	7637302	0	-	0.61	(0.58,1]	chr21	798924	350	INTRON	INTRON	ENSG00000286033	ENSG00000286033.1	ENST00000651312.1	lncRNA	lncRNA	lncRNA	lncRNA	0	43	2	4.58025	4.8469	5.11355	0.0271806	0.0172566	0.112113	0.0923809
chr16	85401531	85401631	6517086	0	+	0.71	(0.58,1]	chr16	646391	422	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	134	2	4.49147	4.84685	5.20223	0.00411607	0.0022148	0.0374453	0.0295806
chr2	239343785	239343885	1392148	0	-	0.56	(0.523,0.58]	chr2	148752	193	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	101	2	3.31719	4.846595000000001	6.376	0.0124719	0.00529293	0.0765738	0.047841
chr3	105847735	105847835	1862763	0	-	0.33	(0.29,0.33]	chr3	189853	79	INTRON	INTRON	CBLB	ENSG00000114423.23	ENST00000645759.1:ENST00000394030.8:ENST00000646499.1:ENST00000645425.1:ENST00000646825.1:ENST00000643322.1:ENST00000403724.5:ENST00000405772.5:ENST00000447441.6:ENST00000643403.1:ENST00000438603.6:ENST00000443752.2:ENST00000643192.1:ENST00000642907.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.51618	4.84654	5.1769	0.035586	0.0285091	0.127529	0.123012
chr11	68799017	68799117	5057809	0	-	0.46	(0.45,0.485]	chr11	492462	4	SS5_PROX	SS5_PROX:INTRON	CPT1A	ENSG00000110090.13	ENST00000540367.5:ENST00000376618.6:ENST00000265641.10:ENST00000539743.5:ENST00000538994.1	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.11446	4.846500000000001	5.57854	0.0592571	0.0230065	0.176157	0.102982
chr15	51971287	51971387	6261341	0	-	0.52	(0.485,0.523]	chr15	617019	2	SS5_PROX	SS5_PROX:INTRON	LEO1	ENSG00000166477.13	ENST00000299601.10:ENST00000315141.5	protein_coding	protein_coding	protein_coding	protein_coding	1	121	2	3.81856	4.8464350000000005	5.87431	0.012775	0.00127835	0.0769397	0.0168904
chr20	21243049	21243148	7448946	0	+	0.525253	(0.523,0.58]	chr20	775009	99	INTRON	INTRON	KIZ	ENSG00000088970.16	ENST00000619574.4:ENST00000620891.4:ENST00000611685.4:ENST00000616848.4:ENST00000619189.5:ENST00000616679.4:ENST00000619179.4:ENST00000621366.1:ENST00000451772.5:ENST00000419359.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	112	2	2.98158	4.84637	6.71116	0.0258432	0.00284169	0.116361	0.033773
chr11	70792446	70792546	5062206	0	-	0.48	(0.45,0.485]	chr11	492701	746	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	97	2	3.73402	4.84623	5.95844	0.0124835	0.0049945	0.0761905	0.0428203
chr1	1229737	1229835	380490	0	-	0.612245	(0.58,1]	chr1	42863	4	INTRON	INTRON	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000459994.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.74346	4.84614	4.94882	0.0354433	0.0121457	0.127188	0.0754623
chr1	17669790	17669889	54909	0	+	0.616162	(0.58,1]	chr1	5603	48	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.74346	4.84614	4.94882	0.0354433	0.0121457	0.127188	0.0754623
chr21	45434443	45434543	7630607	0	+	0.65	(0.58,1]	chr21	797656	286	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.74346	4.84614	4.94882	0.0354433	0.0121457	0.127188	0.0754623
chr9	134414377	134414476	4261577	0	+	0.676768	(0.58,1]	chr9	406352	49	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000481739.2:ENST00000356384.4:ENST00000672570.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.74346	4.84614	4.94882	0.0354433	0.0121457	0.127188	0.0754623
chr7	138550562	138550662	3502914	0	+	0.47	(0.45,0.485]	chr7	337535	1	SS3_PROX	SS3_PROX:INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	259	2	4.48511	4.84606	5.20701	0.00413452	8.42234e-5	0.0415963	0.00241012
chr14	54759660	54759760	5821384	0	+	0.52	(0.485,0.523]	chr14	569120	1	SS3_PROX	SS3_PROX:INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555192.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.52142	4.84577	5.17012	0.038581	0.0273555	0.131324	0.119337
chr9	120711957	120712057	4386883	0	-	0.5	(0.485,0.523]	chr9	418511	520	INTRON	INTRON	MEGF9	ENSG00000106780.9	ENST00000373930.4	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.52142	4.84577	5.17012	0.038581	0.0273555	0.131324	0.119337
chr9	133849502	133849602	4428893	0	-	0.5	(0.485,0.523]	chr9	423304	148	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.52142	4.84577	5.17012	0.038581	0.0273555	0.131324	0.119337
chr13	29590358	29590457	5677921	0	-	0.414141	(0.39,0.419]	chr13	557663	37	INTRON	INTRON	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	1	122	2	3.23341	4.845705000000001	6.458	0.0391493	4.39359e-4	0.13192	0.00798319
chr12	112226547	112226642	5503305	0	-	0.368421	(0.36,0.39]	chr12	541896	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550968.5:ENST00000547519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.7639	4.845625	4.92735	0.0811309	0.0160072	0.177951	0.0894586
chr1	1032612	1032712	1041	0	+	0.69	(0.58,1]	chr1	166	98	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.29454	4.845	5.39546	0.0305531	0.0168207	0.126768	0.0884836
chr1	19647770	19647870	57443	0	+	0.59	(0.58,1]	chr1	5810	1	SS5_PROX	SS5_PROX:INTRON	NBL1	ENSG00000158747.15	ENST00000602662.1:ENST00000428975.5:ENST00000289749.6:ENST00000622566.4:ENST00000451758.5:ENST00000621723.4:ENST00000439664.5:ENST00000375136.8:ENST00000618761.4:ENST00000425400.5:ENST00000615215.4:ENST00000439278.5:ENST00000548815.2:ENST00000427894.5	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.29454	4.845	5.39546	0.0305531	0.0168207	0.126768	0.0884836
chr3	197517754	197517854	1991565	0	-	0.6	(0.58,1]	chr3	202753	20	INTRON	INTRON	BDH1	ENSG00000161267.12	ENST00000358186.6:ENST00000392378.6:ENST00000392379.6:ENST00000651856.1:ENST00000441275.5:ENST00000479425.5:ENST00000446746.5:ENST00000477015.5:ENST00000434143.5:ENST00000432819.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.29454	4.845	5.39546	0.0305531	0.0168207	0.126768	0.0884836
chr8	25410897	25410995	3776414	0	+	0.581633	(0.58,1]	chr8	363771	3	SS3_PROX	SS3_PROX:INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000467709.6:ENST00000521405.1:ENST00000479547.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.29454	4.845	5.39546	0.0305531	0.0168207	0.126768	0.0884836
chr2	3299493	3299592	1081102	0	-	0.313131	(0.29,0.33]	chr2	117633	168	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	114	2	3.33785	4.84499	6.35213	0.0277625	3.72808e-4	0.112951	0.00708918
chr7	47366470	47366569	3587456	0	-	0.50505	(0.485,0.523]	chr7	346030	198	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	132	2	3.02901	4.84494	6.66087	0.00918957	0.00309962	0.0635962	0.0355173
chr9	109063683	109063780	4364393	0	-	0.443299	(0.419,0.45]	chr9	416802	29	INTRON	INTRON	TMEM245	ENSG00000106771.13	ENST00000374586.8:ENST00000413712.6:ENST00000491854.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	124	2	3.28483	4.84489	6.40495	0.038131	5.72149e-4	0.131324	0.00960229
chr11	70686804	70686904	5061147	0	-	0.6	(0.58,1]	chr11	492688	168	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	104	2	3.03676	4.844735	6.65271	0.0198789	0.00141059	0.100864	0.0229261
chr1	173444195	173444295	619035	0	-	0.52	(0.485,0.523]	chr1	73247	17	INTRON	INTRON	PRDX6-AS1	ENSG00000203739.5	ENST00000669220.1:ENST00000661267.1:ENST00000660739.1:ENST00000367716.3:ENST00000659863.1	lncRNA	lncRNA	lncRNA	lncRNA	1	98	2	3.46766	4.84468	6.2217	0.0089247	0.00693912	0.0620271	0.0553898
chr2	88625025	88625121	1215849	0	-	0.40625	(0.39,0.419]	chr2	131043	2	INTRON	INTRON	EIF2AK3	ENSG00000172071.15	ENST00000303236.9:ENST00000652099.1:ENST00000682892.1:ENST00000652423.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.76257	4.84468	4.92679	0.0822354	0.0160946	0.179396	0.0896852
chr5	118846900	118846998	2749034	0	-	0.418367	(0.39,0.419]	chr5	269455	55	INTRON	INTRON	DTWD2	ENSG00000169570.10	ENST00000510708.6:ENST00000304058.8:ENST00000515439.7:ENST00000506980.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.76257	4.84468	4.92679	0.0822354	0.0160946	0.179396	0.0896852
chr12	132742953	132743053	5539930	0	-	0.43	(0.419,0.45]	chr12	546703	4	SS5_PROX	SS5_PROX:INTRON	ANKLE2	ENSG00000176915.15	ENST00000357997.10:ENST00000539605.5:ENST00000538591.5:ENST00000535036.5:ENST00000545623.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	171	2	3.01641	4.84455	6.67269	0.030547499999999998	2.80959e-4	0.118898	0.00578259
chr3	61828976	61829076	1489291	0	+	0.43	(0.419,0.45]	chr3	160092	577	INTRON	INTRON	PTPRG	ENSG00000144724.20	ENST00000474889.6:ENST00000295874.14	protein_coding	protein_coding	protein_coding	protein_coding	1	119	2	4.59744	4.844385	5.09133	0.0586308	6.75612e-4	0.155565	0.0108135
chr11	16926383	16926483	5010832	0	-	0.38	(0.36,0.39]	chr11	484333	130	INTRON	INTRON	PLEKHA7	ENSG00000166689.17	ENST00000531066.6:ENST00000355661.7:ENST00000532079.1:ENST00000529213.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.69932	4.84437	4.98942	0.0877431	0.0141427	0.183437	0.0833845
chr15	25434765	25434865	6205969	0	-	0.39	(0.36,0.39]	chr15	610832	73	INTRON	INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000625681.2:ENST00000627018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	44	2	4.82572	4.844105	4.86249	0.0751666	0.0181775	0.172839	0.0955836
chr15	97755042	97755142	6359594	0	-	0.39	(0.36,0.39]	chr15	626828	16	INTRON	INTRON	LINC00923	ENSG00000251209.9	ENST00000647870.1:ENST00000614972.4:ENST00000671187.1:ENST00000503768.6:ENST00000503874.3	lncRNA	lncRNA	lncRNA	lncRNA	0	44	2	4.82572	4.844105	4.86249	0.0751666	0.0181775	0.172839	0.0955836
chrX	72468707	72468805	8063174	0	-	0.367347	(0.36,0.39]	chrX	841379	3	INTRON	INTRON	HDAC8	ENSG00000147099.21	ENST00000373583.6:ENST00000373573.9:ENST00000648850.1:ENST00000648452.1:ENST00000649097.1:ENST00000647886.1:ENST00000648855.1:ENST00000647654.1:ENST00000648939.1:ENST00000648504.1:ENST00000648459.1:ENST00000373589.9:ENST00000650604.1:ENST00000647594.1:ENST00000647980.1:ENST00000647859.1:ENST00000650076.1:ENST00000648731.1:ENST00000649181.1:ENST00000649274.1:ENST00000650471.1:ENST00000647641.1:ENST00000649543.1:ENST00000373568.7:ENST00000648139.1:ENST00000648834.1:ENST00000648711.1:ENST00000436675.6:ENST00000647606.1:ENST00000415409.6:ENST00000478743.2:ENST00000648298.1:ENST00000648870.1:ENST00000649116.1:ENST00000649752.1:ENST00000647718.1:ENST00000649242.1:ENST00000649518.1:ENST00000648285.1:ENST00000412342.6:ENST00000373571.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.82572	4.844105	4.86249	0.0751666	0.0181775	0.172839	0.0955836
chr11	47518668	47518768	5036060	0	-	0.49	(0.485,0.523]	chr11	487589	39	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1	protein_coding	protein_coding	protein_coding	protein_coding	1	95	2	3.83677	4.844035	5.8513	0.0131886	0.00360381	0.0785398	0.0342681
chr12	101923514	101923612	5308493	0	+	0.306122	(0.29,0.33]	chr12	517177	24	UTR3	UTR3:EXON_MRNA:INTRON	DRAM1	ENSG00000136048.14	ENST00000258534.13:ENST00000549066.1	protein_coding	protein_coding	protein_coding	protein_coding	1	99	2	4.20689	4.84398	5.48107	0.0222022	0.00140294	0.101857	0.0180301
chr11	70876318	70876418	5063050	0	-	0.51	(0.485,0.523]	chr11	492728	33	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000645599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	105	2	3.17158	4.843875	6.51617	0.017456	0.00406194	0.0928044	0.0413652
chr2	8740274	8740364	1083289	0	-	0.533333	(0.523,0.58]	chr2	117890	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KIDINS220	ENSG00000134313.17	ENST00000569008.2:ENST00000689369.1:ENST00000693394.1:ENST00000689852.1:ENST00000693597.1:ENST00000693432.1:ENST00000496383.5:ENST00000256707.8:ENST00000687912.1:ENST00000685097.1:ENST00000473731.5:ENST00000687894.1:ENST00000691030.1:ENST00000686383.1:ENST00000686906.1:ENST00000488729.5:ENST00000489024.5:ENST00000638224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	115	2	3.32604	4.84359	6.36114	0.0296013	3.21725e-4	0.116079	0.0063695
chr2	3457987	3458084	711010	0	+	0.721649	(0.58,1]	chr2	83170	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000441099.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000479955.5:ENST00000497597.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	122	2	3.07041	4.843484999999999	6.61656	0.00661304	0.00152464	0.0512951	0.0240691
chrX	2841108	2841207	7830933	0	+	0.353535	(0.33,0.36]	chrX	822184	106	INTRON	INTRON	GYG2	ENSG00000056998.20	ENST00000381163.7:ENST00000381161.5:ENST00000398806.8:ENST00000520904.3:ENST00000469234.6:ENST00000353656.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.57035	4.843445	5.11654	0.0945416	0.00998589	0.188571	0.0667545
chr13	113350148	113350248	5753434	0	-	0.6	(0.58,1]	chr13	564102	48	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	1	90	2	3.56821	4.84343	6.11865	0.00550024	0.00429384	0.0454065	0.042386
chr11	96295888	96295988	5113095	0	-	0.41	(0.39,0.419]	chr11	496566	2020	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	3	455	2	4.71796	4.843385	4.96881	8.67163e-4	4.4925e-4	0.0175702	0.00812774
chr19	8397087	8397186	7200628	0	+	0.565657	(0.523,0.58]	chr19	734267	63	INTRON	INTRON	RAB11B	ENSG00000185236.12	ENST00000600719.5:ENST00000328024.11:ENST00000598706.1:ENST00000601897.1:ENST00000594216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.71922	4.84318	4.96714	0.0721601	0.0108948	0.168159	0.0706366
chr4	716635	716734	1993794	0	+	0.575758	(0.523,0.58]	chr4	203088	103	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.71922	4.84318	4.96714	0.0721601	0.0108948	0.168159	0.0706366
chr9	124895757	124895857	4405602	0	-	0.53	(0.523,0.58]	chr9	419967	49	INTRON	INTRON	GOLGA1	ENSG00000136935.14	ENST00000373555.9:ENST00000475407.5:ENST00000485337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.71922	4.84318	4.96714	0.0721601	0.0108948	0.168159	0.0706366
chr4	94570353	94570453	2088849	0	+	0.4	(0.39,0.419]	chr4	212913	205	INTRON	INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000318007.9:ENST00000380180.7:ENST00000514830.5:ENST00000509333.5:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000508216.5:ENST00000510099.5:ENST00000509357.5:ENST00000513341.5:ENST00000508531.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.82439	4.84316	4.86193	0.0762206	0.0182739	0.174484	0.0958352
chr5	60117585	60117685	2675320	0	-	0.4	(0.39,0.419]	chr5	264383	1285	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000502484.6:ENST00000509368.6:ENST00000509355.5:ENST00000506024.5:ENST00000506510.6:ENST00000511382.1:ENST00000505507.6:ENST00000514552.5:ENST00000515835.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.82439	4.84316	4.86193	0.0762206	0.0182739	0.174484	0.0958352
chr7	36260924	36261024	3346065	0	+	0.29	[0,0.29]	chr7	323698	215	INTRON	INTRON	EEPD1	ENSG00000122547.11	ENST00000242108.9:ENST00000534978.1	protein_coding	protein_coding	protein_coding	protein_coding	2	126	2	3.09487	4.843125	6.59138	0.0072184	0.00180872	0.0544219	0.026458
chr16	89300326	89300423	6659809	0	-	0.628866	(0.58,1]	chr16	666649	16	UTR3	UTR3:EXON_MRNA:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	118	2	3.30794	4.84308	6.37822	0.00347194	0.00252415	0.0336158	0.031696
chr10	102992563	102992663	4579065	0	+	0.54	(0.523,0.58]	chr10	437563	651	INTRON	INTRON	CNNM2	ENSG00000148842.18	ENST00000369878.9:ENST00000433628.2	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.78384	4.84303	4.90222	0.0663135	0.0125132	0.162385	0.0765738
chr14	63508024	63508124	5992619	0	-	0.53	(0.523,0.58]	chr14	587806	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	43	2	4.78384	4.84303	4.90222	0.0663135	0.0125132	0.162385	0.0765738
chr8	144306813	144306912	3929572	0	+	0.525253	(0.523,0.58]	chr8	375502	129	INTRON	INTRON	HSF1	ENSG00000185122.11	ENST00000400780.8:ENST00000528838.6:ENST00000528988.1:ENST00000533240.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.78384	4.84303	4.90222	0.0663135	0.0125132	0.162385	0.0765738
chr8	23043543	23043643	3954751	0	-	0.35	(0.33,0.36]	chr8	377508	3	SS3_PROX	SS3_PROX:INTRON	TNFRSF10B	ENSG00000120889.13	ENST00000276431.9:ENST00000347739.3:ENST00000523504.5:ENST00000519910.1:ENST00000519028.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	102	2	4.18348	4.842755	5.50203	0.0265895	0.00172571	0.111433	0.0208328
chr13	113329979	113330079	5753230	0	-	0.65	(0.58,1]	chr13	564094	35	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	2	119	2	3.22338	4.84275	6.46212	0.00438486	0.00211728	0.0393407	0.028892
chr16	72346967	72347067	6622023	0	-	0.36	(0.33,0.36]	chr16	663407	552	INTRON	INTRON	LINC01572	ENSG00000261008.8	ENST00000624829.4	lncRNA	lncRNA	lncRNA	lncRNA	0	44	2	4.73368	4.842655	4.95163	0.0583482	0.0216127	0.155373	0.105648
chr17	4330973	4331073	6842094	0	-	0.37	(0.36,0.39]	chr17	692461	235	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1:ENST00000571953.5:ENST00000574059.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	125	2	3.68795	4.84251	5.99707	0.0189953	0.00143949	0.0947671	0.0183435
chr3	51665499	51665598	1472195	0	+	0.313131	(0.29,0.33]	chr3	157989	22	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.72635	4.8423300000000005	4.95831	0.0672935	0.0118616	0.163263	0.0746945
chr17	316232	316332	6821438	0	-	0.58	(0.523,0.58]	chr17	689582	97	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	98	2	3.44013	4.842275	6.24442	0.00938609	0.00670944	0.064735	0.0541591
chr7	123688941	123689041	3701902	0	-	0.39	(0.36,0.39]	chr7	355565	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	WASL	ENSG00000106299.8	ENST00000223023.5	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.39677	4.842275	5.28778	0.0422707	0.0407706	0.149195	0.135868
chr19	8240751	8240840	7200289	0	+	0.617977	(0.58,1]	chr19	734191	2	SS5_PROX	SS5_PROX:INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559490.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	114	2	4.04904	4.8422350000000005	5.63543	0.0056478	0.00131165	0.0495171	0.0171898
chr4	67795797	67795897	2050480	0	+	0.33	(0.29,0.33]	chr4	209728	49	INTRON	INTRON	UBA6-DT	ENSG00000248049.8	ENST00000500538.7:ENST00000667140.1:ENST00000663060.1	lncRNA	lncRNA	lncRNA	lncRNA	0	43	2	4.79099	4.8422	4.89341	0.061706	0.0135896	0.158854	0.0811697
chr17	76356225	76356324	6975580	0	-	0.50505	(0.485,0.523]	chr17	712063	14	INTRON	INTRON	PRPSAP1	ENSG00000161542.17	ENST00000423915.1:ENST00000442767.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.71964	4.8416250000000005	4.96361	0.0718646	0.0112713	0.168159	0.071709
chr9	61969638	61969732	4158022	0	+	0.5	(0.485,0.523]	chr9	395241	7	INTRON	INTRON	FAM27C	ENSG00000231527.7	ENST00000653087.1:ENST00000660875.1:ENST00000670686.1:ENST00000443347.6:ENST00000668789.1:ENST00000657353.1:ENST00000669747.1:ENST00000662964.1:ENST00000650759.1:ENST00000656926.1:ENST00000655025.1:ENST00000655049.1:ENST00000659299.1:ENST00000651201.1:ENST00000651799.1	lncRNA	lncRNA	lncRNA	lncRNA	0	43	2	4.71964	4.8416250000000005	4.96361	0.0718646	0.0112713	0.168159	0.071709
chr20	44402376	44402453	7482937	0	+	0.558442	(0.523,0.58]	chr20	779636	2	SS3_PROX	SS3_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000682427.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	547	2	4.6505	4.841615	5.03273	0.00111469	1.27787e-5	0.0201895	6.12982e-4
chr2	152337119	152337219	925482	0	+	0.54	(0.523,0.58]	chr2	103058	10	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	4	181	2	3.34928	4.8413699999999995	6.33346	0.00571732	0.00150592	0.0498083	0.018891
chr2	64099100	64099200	1167100	0	-	0.37	(0.36,0.39]	chr2	127361	21	INTRON	INTRON	PELI1	ENSG00000197329.12	ENST00000358912.5	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.48559	4.84136	5.19713	0.0462258	0.036329	0.143138	0.139793
chr10	61958102	61958202	4491142	0	+	0.48	(0.45,0.485]	chr10	429664	173	INTRON	INTRON	ARID5B	ENSG00000150347.17	ENST00000644638.1:ENST00000681100.1:ENST00000279873.12	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.49786	4.84112	5.18438	0.101311	0.00773818	0.196131	0.0568726
chr20	41559626	41559726	7564234	0	-	0.43	(0.419,0.45]	chr20	790090	79	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	102	2	3.56166	4.8407800000000005	6.1199	0.0132894	0.00882182	0.0787251	0.061625
chr17	19665147	19665247	6696190	0	+	0.55	(0.523,0.58]	chr17	672343	1	SS5_PROX	SS5_PROX:INTRON	ALDH3A2	ENSG00000072210.19	ENST00000581518.6:ENST00000673136.1:ENST00000672465.1:ENST00000631291.2:ENST00000672357.1:ENST00000579855.5:ENST00000176643.11:ENST00000339618.8:ENST00000672564.1:ENST00000671878.1:ENST00000582991.6:ENST00000395575.7:ENST00000672487.1:ENST00000630662.2:ENST00000472059.6:ENST00000672567.1:ENST00000672709.1:ENST00000672059.1:ENST00000673472.1:ENST00000672608.1:ENST00000476965.5:ENST00000574078.3:ENST00000673064.1:ENST00000673516.1:ENST00000672591.1:ENST00000571163.2:ENST00000573947.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.65157	4.84042	5.02927	0.0787008	0.0095202	0.175203	0.0650078
chr17	56893017	56893113	6931128	0	-	0.552083	(0.523,0.58]	chr17	706271	4	INTRON	INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000574234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.65157	4.84042	5.02927	0.0787008	0.0095202	0.175203	0.0650078
chr2	239339290	239339389	1392103	0	-	0.545455	(0.523,0.58]	chr2	148752	148	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.65157	4.84042	5.02927	0.0787008	0.0095202	0.175203	0.0650078
chr9	129142344	129142444	4250185	0	+	0.54	(0.523,0.58]	chr9	404629	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PTPA	ENSG00000119383.21	ENST00000358994.9:ENST00000357197.8:ENST00000348141.9:ENST00000347048.8:ENST00000337738.6:ENST00000355007.7:ENST00000393370.7:ENST00000452489.6:ENST00000411917.1:ENST00000423100.5:ENST00000414510.5:ENST00000436883.5:ENST00000432124.5:ENST00000435305.1:ENST00000419582.5:ENST00000432651.5:ENST00000435132.5:ENST00000434095.2	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.65157	4.84042	5.02927	0.0787008	0.0095202	0.175203	0.0650078
chr6	167964479	167964570	3074757	0	+	0.395604	(0.39,0.419]	chr6	298971	3	EXON_MRNA	EXON_MRNA:INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000392112.5:ENST00000400822.7:ENST00000447894.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7:ENST00000507704.5:ENST00000515794.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	138	2	3.00819	4.840389999999999	6.67259	0.0112824	0.00461678	0.0717359	0.0442497
chr15	67050707	67050806	6307997	0	-	0.545455	(0.523,0.58]	chr15	621983	484	INTRON	INTRON	ENSG00000259347	ENSG00000259347.8	ENST00000692307.1:ENST00000558071.2	lncRNA	lncRNA	lncRNA	lncRNA	0	50	2	4.13061	4.840365	5.55012	0.0533354	0.0217068	0.167062	0.100615
chr12	111894853	111894952	5330956	0	+	0.373737	(0.36,0.39]	chr12	520018	19	UTR3	UTR3:EXON_MRNA:INTRON	MAPKAPK5	ENSG00000089022.14	ENST00000550735.7:ENST00000547915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.6317	4.840315	5.04893	0.0950937	0.0125348	0.189021	0.0765738
chr2	11362311	11362411	1089489	0	-	0.37	(0.36,0.39]	chr2	118760	39	INTRON	INTRON	ENSG00000230952	ENSG00000230952.1	ENST00000430897.1	lncRNA	lncRNA	lncRNA	lncRNA	0	44	2	4.6317	4.840315	5.04893	0.0950937	0.0125348	0.189021	0.0765738
chr4	10103395	10103495	2195684	0	-	0.43	(0.419,0.45]	chr4	222413	1	SS5_PROX	SS5_PROX:INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	209	2	2.65999	4.84018	7.02037	0.00973837	0.00294696	0.066382	0.0344907
chr10	19463479	19463579	4453472	0	+	0.47	(0.45,0.485]	chr10	426803	126	INTRON	INTRON	MALRD1	ENSG00000204740.11	ENST00000454679.7:ENST00000377266.7	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.67139	4.83999	5.00859	0.052901	0.0223378	0.14912	0.108193
chr16	87736531	87736631	6656446	0	-	0.42	(0.419,0.45]	chr16	665892	55	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.63955	4.83999	5.04043	0.0625897	0.0293406	0.160305	0.125102
chr18	7800955	7801055	7007271	0	+	0.48	(0.45,0.485]	chr18	716113	263	INTRON	INTRON	PTPRM	ENSG00000173482.17	ENST00000332175.12:ENST00000580170.6:ENST00000400053.8:ENST00000400060.8	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.67139	4.83999	5.00859	0.052901	0.0223378	0.14912	0.108193
chr8	42955307	42955406	3809850	0	+	0.454545	(0.45,0.485]	chr8	366870	45	INTRON	INTRON	HOOK3	ENSG00000168172.9	ENST00000527306.1:ENST00000307602.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.67139	4.83999	5.00859	0.052901	0.0223378	0.14912	0.108193
chrX	109714667	109714766	8091282	0	-	0.434343	(0.419,0.45]	chrX	843713	181	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000508092.5:ENST00000504383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	45	2	4.63955	4.83999	5.04043	0.0625897	0.0293406	0.160305	0.125102
chr11	70597229	70597329	5060245	0	-	0.57	(0.523,0.58]	chr11	492663	939	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.83424	4.839965	4.84569	0.0610722	0.0144272	0.158506	0.0833845
chr11	129977258	129977358	5146037	0	-	0.55	(0.523,0.58]	chr11	500193	158	INTRON	INTRON	PRDM10	ENSG00000170325.16	ENST00000358825.9:ENST00000360871.8:ENST00000528746.5:ENST00000527581.5:ENST00000531431.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.83424	4.839965	4.84569	0.0610722	0.0144272	0.158506	0.0833845
chr17	64796371	64796469	6949537	0	-	0.55102	(0.523,0.58]	chr17	709067	35	INTRON	INTRON	PLEKHM1P1	ENSG00000214176.10	ENST00000578036.5:ENST00000582986.5:ENST00000582201.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	43	2	4.83424	4.839965	4.84569	0.0610722	0.0144272	0.158506	0.0833845
chr2	238439483	238439582	1074078	0	+	0.555556	(0.523,0.58]	chr2	116441	31	INTRON	INTRON	ASB1	ENSG00000065802.12	ENST00000463352.5:ENST00000264607.9:ENST00000409297.1:ENST00000438264.5:ENST00000491653.1:ENST00000468122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.83424	4.839965	4.84569	0.0610722	0.0144272	0.158506	0.0833845
chr7	47480102	47480202	3588609	0	-	0.56	(0.523,0.58]	chr7	346123	270	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.83424	4.839965	4.84569	0.0610722	0.0144272	0.158506	0.0833845
chr17	15467359	15467459	6860108	0	-	0.54	(0.523,0.58]	chr17	695069	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	115	2	3.47085	4.839625	6.2084	0.0233215	4.95211e-4	0.103725	0.00865935
chr4	17628647	17628746	2017164	0	+	0.585859	(0.58,1]	chr4	206143	31	UTR3	UTR3:EXON_MRNA	MED28	ENSG00000118579.13	ENST00000237380.12	protein_coding	protein_coding	protein_coding	protein_coding	2	219	2	4.62921	4.83957	5.04993	0.00163826	6.39597e-5	0.0250898	0.00196197
chr7	121386497	121386597	3694942	0	-	0.36	(0.33,0.36]	chr7	355171	31	INTRON	INTRON	FAM3C	ENSG00000196937.11	ENST00000359943.8:ENST00000412653.5:ENST00000426156.1	protein_coding	protein_coding	protein_coding	protein_coding	1	124	2	2.89559	4.8395399999999995	6.78349	0.0605295	1.50436e-4	0.158506	0.00368673
chr2	138419984	138420084	1277668	0	-	0.41	(0.39,0.419]	chr2	137676	11	INTRON	INTRON	SPOPL-DT	ENSG00000228043.5	ENST00000431985.5	lncRNA	lncRNA	lncRNA	lncRNA	0	44	2	4.63037	4.839365	5.04836	0.0963077	0.0126072	0.189169	0.0768036
chr7	133845314	133845414	3491098	0	+	0.29	[0,0.29]	chr7	336715	274	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.62442	4.839255	5.05409	0.0318802	0.019938	0.12158	0.100864
chr12	28264520	28264620	5195328	0	+	0.31	(0.29,0.33]	chr12	505416	47	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000543534.5:ENST00000543809.5:ENST00000545737.5:ENST00000381259.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.82544	4.839145	4.85285	0.0567079	0.0156279	0.154343	0.0877396
chr9	112432438	112432538	4219774	0	+	0.3	(0.29,0.33]	chr9	400265	131	INTRON	INTRON	HSDL2	ENSG00000119471.15	ENST00000398803.1:ENST00000488101.5:ENST00000398805.8:ENST00000467434.5:ENST00000480881.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.82544	4.839145	4.85285	0.0567079	0.0156279	0.154343	0.0877396
chr1	43562412	43562512	107063	0	+	0.55	(0.523,0.58]	chr1	13192	81	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.60868	4.839124999999999	5.06957	0.0448011	0.0226775	0.140478	0.108193
chr10	79104330	79104430	4532398	0	+	0.57	(0.523,0.58]	chr10	432420	347	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.60868	4.839124999999999	5.06957	0.0448011	0.0226775	0.140478	0.108193
chr15	34555052	34555151	6218169	0	-	0.555556	(0.523,0.58]	chr15	612407	7	INTRON	INTRON	GOLGA8B	ENSG00000215252.12	ENST00000683415.1:ENST00000569100.5:ENST00000484716.5:ENST00000564575.5:ENST00000566091.5:ENST00000566258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	44	2	4.60868	4.839124999999999	5.06957	0.0448011	0.0226775	0.140478	0.108193
chr9	134371470	134371570	4261138	0	+	0.57	(0.523,0.58]	chr9	406311	445	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.60868	4.839124999999999	5.06957	0.0448011	0.0226775	0.140478	0.108193
chrX	119237091	119237191	7943996	0	+	0.58	(0.523,0.58]	chrX	831204	4	SS5_PROX	SS5_PROX:INTRON	PGRMC1	ENSG00000101856.10	ENST00000535419.2:ENST00000217971.8	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.60868	4.839124999999999	5.06957	0.0448011	0.0226775	0.140478	0.108193
chr13	97334940	97335039	5631933	0	+	0.494949	(0.485,0.523]	chr13	553188	1	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.65198	4.838855000000001	5.02573	0.0783889	0.00985879	0.175203	0.0664239
chr17	49018228	49018328	6750231	0	+	0.49	(0.485,0.523]	chr17	680309	38	INTRON	INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2:ENST00000515586.5:ENST00000499130.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.65198	4.838855000000001	5.02573	0.0783889	0.00985879	0.175203	0.0664239
chr2	100903932	100904032	859251	0	+	0.51	(0.485,0.523]	chr2	97321	569	INTRON	INTRON	NPAS2	ENSG00000170485.17	ENST00000335681.10:ENST00000427413.5	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.65198	4.838855000000001	5.02573	0.0783889	0.00985879	0.175203	0.0664239
chr2	102106171	102106271	863447	0	+	0.5	(0.485,0.523]	chr2	97787	9	INTRON	INTRON	IL1R1	ENSG00000115594.12	ENST00000452403.5:ENST00000409929.5:ENST00000424272.5:ENST00000409589.5:ENST00000409329.5	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.65198	4.838855000000001	5.02573	0.0783889	0.00985879	0.175203	0.0664239
chr22	50682547	50682644	7754995	0	+	0.515464	(0.485,0.523]	chr22	812716	28	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.65198	4.838855000000001	5.02573	0.0783889	0.00985879	0.175203	0.0664239
chr7	30160499	30160597	3338875	0	+	0.418367	(0.39,0.419]	chr7	323119	31	UTR3	UTR3:EXON_MRNA	MTURN	ENSG00000180354.16	ENST00000324453.13:ENST00000324489.5	protein_coding	protein_coding	protein_coding	protein_coding	1	101	2	4.00778	4.838850000000001	5.66992	0.0237738	0.00291522	0.105296	0.0298627
chr5	104274377	104274477	2497533	0	+	0.41	(0.39,0.419]	chr5	248658	1691	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	0	44	2	4.79402	4.838839999999999	4.88366	0.0707789	0.0208208	0.168159	0.102713
chrX	19872827	19872927	7992773	0	-	0.4	(0.39,0.419]	chrX	836083	362	INTRON	INTRON	SH3KBP1	ENSG00000147010.18	ENST00000397821.8:ENST00000379697.7	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.79402	4.838839999999999	4.88366	0.0707789	0.0208208	0.168159	0.102713
chr1	111726477	111726575	561663	0	-	0.510204	(0.485,0.523]	chr1	64439	35	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	INKA2	ENSG00000197852.12	ENST00000527570.1:ENST00000357260.6:ENST00000534365.1:ENST00000444059.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.83072	4.838415	4.84611	0.0608067	0.0148956	0.158506	0.0847741
chr12	94996312	94996403	5475506	0	-	0.505495	(0.485,0.523]	chr12	538264	8	INTRON	INTRON	NDUFA12	ENSG00000184752.14	ENST00000552205.6:ENST00000684171.1:ENST00000547157.1:ENST00000682903.1:ENST00000327772.7:ENST00000684558.1:ENST00000551991.5:ENST00000547986.5:ENST00000546788.1:ENST00000550187.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.83072	4.838415	4.84611	0.0608067	0.0148956	0.158506	0.0847741
chr12	132537547	132537646	5352991	0	+	0.50505	(0.485,0.523]	chr12	523670	92	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.83072	4.838415	4.84611	0.0608067	0.0148956	0.158506	0.0847741
chr13	33263959	33264059	5685237	0	-	0.49	(0.485,0.523]	chr13	558196	581	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.83072	4.838415	4.84611	0.0608067	0.0148956	0.158506	0.0847741
chr14	65677079	65677179	5849083	0	+	0.49	(0.485,0.523]	chr14	572343	72	INTRON	INTRON	FUT8	ENSG00000033170.17	ENST00000360689.9:ENST00000394586.6:ENST00000342677.10:ENST00000557164.5:ENST00000673929.1:ENST00000674118.1:ENST00000358307.6:ENST00000557536.5:ENST00000554765.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.83072	4.838415	4.84611	0.0608067	0.0148956	0.158506	0.0847741
chr15	64478217	64478317	6131115	0	+	0.51	(0.485,0.523]	chr15	603258	170	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000416172.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.83072	4.838415	4.84611	0.0608067	0.0148956	0.158506	0.0847741
chr18	2605226	2605324	7000965	0	+	0.5	(0.485,0.523]	chr18	715551	34	INTRON	INTRON	NDC80	ENSG00000080986.13	ENST00000261597.9	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.83072	4.838415	4.84611	0.0608067	0.0148956	0.158506	0.0847741
chr2	239270285	239270385	1391411	0	-	0.51	(0.485,0.523]	chr2	148740	187	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	43	2	4.83072	4.838415	4.84611	0.0608067	0.0148956	0.158506	0.0847741
chr7	75236892	75236992	3605452	0	-	0.51	(0.485,0.523]	chr7	348136	2	SS5_PROX	SS5_PROX:INTRON	GTF2IP1	ENSG00000277053.4	ENST00000622829.4:ENST00000616377.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	43	2	4.83072	4.838415	4.84611	0.0608067	0.0148956	0.158506	0.0847741
chr15	60798244	60798344	6287515	0	-	0.32	(0.29,0.33]	chr15	619558	920	INTRON	INTRON	RORA	ENSG00000069667.16	ENST00000335670.11:ENST00000551975.5:ENST00000557822.5:ENST00000559145.1:ENST00000561093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.59993	4.838345	5.07676	0.0412683	0.0243639	0.136301	0.113231
chr5	32157364	32157464	2630488	0	-	0.4	(0.39,0.419]	chr5	261026	131	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	273	2	4.34333	4.838345	5.33336	0.00629788	7.78695e-5	0.0523832	0.00227427
chr9	14843459	14843559	4280152	0	-	0.38	(0.36,0.39]	chr9	408985	4	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	137	2	4.05725	4.83827	5.61929	0.0102209	0.00359045	0.0684871	0.0342681
chr13	113039164	113039262	5656022	0	+	0.44898	(0.419,0.45]	chr13	555163	52	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5	protein_coding	protein_coding	protein_coding	protein_coding	0	52	2	4.08324	4.838195	5.59315	0.0727147	0.029494	0.199502	0.116079
chr9	110131970	110132069	4217496	0	+	0.434343	(0.419,0.45]	chr9	400048	36	INTRON	INTRON	PALM2AKAP2	ENSG00000157654.19	ENST00000374530.7:ENST00000413420.5:ENST00000302798.7:ENST00000434623.6:ENST00000374525.5:ENST00000495980.1:ENST00000480388.1:ENST00000259318.7:ENST00000471798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	52	2	4.08324	4.838195	5.59315	0.0727147	0.029494	0.199502	0.116079
chr10	79114718	79114818	4532502	0	+	0.48	(0.45,0.485]	chr10	432420	451	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	121	2	3.71719	4.838065	5.95894	0.0163795	0.00119342	0.0875785	0.016037
chr16	81680920	81681019	6510120	0	+	0.50505	(0.485,0.523]	chr16	645979	19	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	1	95	2	3.68058	4.83766	5.99474	0.0103305	0.0053378	0.0684871	0.0447225
chr17	343718	343818	6821726	0	-	0.51	(0.485,0.523]	chr17	689629	24	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000577079.5:ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.60518	4.837585	5.06999	0.0445854	0.0233371	0.140478	0.110098
chr2	235521025	235521125	1062806	0	+	0.49	(0.485,0.523]	chr2	115651	258	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.60518	4.837585	5.06999	0.0445854	0.0233371	0.140478	0.110098
chr9	35728801	35728900	4298432	0	-	0.515152	(0.485,0.523]	chr9	411216	27	INTRON	INTRON	TLN1	ENSG00000137076.21	ENST00000314888.10:ENST00000378192.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.60518	4.837585	5.06999	0.0445854	0.0233371	0.140478	0.110098
chr19	7623069	7623169	7325313	0	-	0.47	(0.45,0.485]	chr19	756877	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XAB2	ENSG00000076924.12	ENST00000358368.5:ENST00000595288.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.41963	4.837365	5.2551	0.0373953	0.0355247	0.137983	0.130656
chr22	37493002	37493102	7808110	0	-	0.47	(0.45,0.485]	chr22	818358	2	SS3_PROX	SS3_PROX:INTRON	CARD10	ENSG00000100065.15	ENST00000403299.5:ENST00000251973.10:ENST00000488141.5:ENST00000467812.1:ENST00000406271.7:ENST00000437756.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.41963	4.837365	5.2551	0.0373953	0.0355247	0.137983	0.130656
chr16	81564976	81565076	6508943	0	+	0.63	(0.58,1]	chr16	645911	691	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	96	2	3.25332	4.83705	6.42078	0.0120565	0.00230938	0.0754623	0.0302623
chr16	68097098	68097198	6474830	0	+	0.44	(0.419,0.45]	chr16	643049	75	INTRON	INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5:ENST00000563796.5:ENST00000567152.5:ENST00000563288.5:ENST00000535127.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	0	44	2	4.7549	4.836695000000001	4.91849	0.0888907	0.0174488	0.183874	0.0928044
chr6	156855706	156855805	3050237	0	+	0.383838	(0.36,0.39]	chr6	296993	259	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000636748.1:ENST00000494260.2:ENST00000636607.1:ENST00000414678.7:ENST00000638000.1:ENST00000636205.1:ENST00000637532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	100	2	3.9354	4.836255	5.73711	0.0210765	0.00347533	0.0996078	0.0336331
chr11	70789048	70789148	5062172	0	-	0.55	(0.523,0.58]	chr11	492701	712	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	100	2	3.31719	4.836040000000001	6.35489	0.0124719	0.00549977	0.0765738	0.0489559
chr6	97245878	97245978	3207020	0	-	0.21	[0,0.29]	chr6	311339	115	INTRON	INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6:ENST00000509383.5:ENST00000510018.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.82096	4.8355250000000005	4.85009	0.0456837	0.0124991	0.142336	0.0765738
chr11	126422221	126422321	4964588	0	+	0.43	(0.419,0.45]	chr11	479892	77	INTRON	INTRON	ST3GAL4	ENSG00000110080.20	ENST00000524834.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	44	2	4.69033	4.835435	4.98054	0.0958674	0.0154548	0.189038	0.0869771
chr16	29820047	29820144	6434931	0	+	0.42268	(0.419,0.45]	chr16	637001	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PAGR1:ENSG00000281348	ENSG00000280789.2:ENSG00000281348.1	ENST00000320330.8:ENST00000562285.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.69033	4.835435	4.98054	0.0958674	0.0154548	0.189038	0.0869771
chr16	89221991	89222091	6523482	0	+	0.45	(0.419,0.45]	chr16	647076	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZNF778	ENSG00000170100.14	ENST00000433976.7:ENST00000620195.4:ENST00000564906.5:ENST00000567651.5:ENST00000306502.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.69033	4.835435	4.98054	0.0958674	0.0154548	0.189038	0.0869771
chr6	5172620	5172719	3089432	0	-	0.434343	(0.419,0.45]	chr6	300021	280	INTRON	INTRON	LYRM4	ENSG00000214113.11	ENST00000330636.9:ENST00000468929.5:ENST00000464010.5:ENST00000463032.5:ENST00000480566.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.69033	4.835435	4.98054	0.0958674	0.0154548	0.189038	0.0869771
chr9	123710452	123710552	4399692	0	-	0.42	(0.419,0.45]	chr9	419704	333	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1:ENST00000474676.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.69033	4.835435	4.98054	0.0958674	0.0154548	0.189038	0.0869771
chr11	70767365	70767465	5061955	0	-	0.51	(0.485,0.523]	chr11	492701	495	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.23628	4.835405	5.43453	0.045492200000000003	0.0258944	0.154539	0.109555
chr16	85427320	85427420	6517344	0	+	0.49	(0.485,0.523]	chr16	646391	680	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.23628	4.835405	5.43453	0.045492200000000003	0.0258944	0.154539	0.109555
chr16	16007115	16007215	6406575	0	+	0.43	(0.419,0.45]	chr16	633005	570	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.81671	4.835179999999999	4.85365	0.08258	0.0197641	0.179396	0.100774
chrX	48939531	48939630	8040870	0	-	0.444444	(0.419,0.45]	chrX	838808	28	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.81671	4.835179999999999	4.85365	0.08258	0.0197641	0.179396	0.100774
chr19	1998454	1998552	7307778	0	-	0.653061	(0.58,1]	chr19	753493	6	INTRON	INTRON	BTBD2	ENSG00000133243.10	ENST00000255608.9:ENST00000589200.3:ENST00000590646.5:ENST00000587742.5:ENST00000588395.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.66416	4.835005	5.00585	0.0323732	0.0144381	0.121593	0.0833845
chr19	5899950	5900048	7318270	0	-	0.612245	(0.58,1]	chr19	755741	26	INTRON	INTRON	NDUFA11	ENSG00000174886.14	ENST00000418389.6:ENST00000308961.5:ENST00000592634.5:ENST00000593233.1:ENST00000650663.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.66416	4.835005	5.00585	0.0323732	0.0144381	0.121593	0.0833845
chr2	10163349	10163448	717934	0	+	0.686869	(0.58,1]	chr2	84002	72	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	42	2	4.66416	4.835005	5.00585	0.0323732	0.0144381	0.121593	0.0833845
chr2	74430929	74431011	1193231	0	-	0.597561	(0.58,1]	chr2	129596	1	SS3_PROX	SS3_PROX:INTRON	RTKN	ENSG00000114993.17	ENST00000272430.10:ENST00000305557.9:ENST00000233330.6:ENST00000479256.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.66416	4.835005	5.00585	0.0323732	0.0144381	0.121593	0.0833845
chr20	25560972	25561072	7540571	0	-	0.61	(0.58,1]	chr20	787074	340	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.66416	4.835005	5.00585	0.0323732	0.0144381	0.121593	0.0833845
chr22	17104225	17104325	7683235	0	+	0.65	(0.58,1]	chr22	803625	1	SS3_PROX	SS3_PROX:INTRON	IL17RA	ENSG00000177663.15	ENST00000319363.11:ENST00000612619.2:ENST00000694951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.66416	4.835005	5.00585	0.0323732	0.0144381	0.121593	0.0833845
chr9	133803289	133803388	4428424	0	-	0.636364	(0.58,1]	chr9	423268	51	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.66416	4.835005	5.00585	0.0323732	0.0144381	0.121593	0.0833845
chr12	65174510	65174610	5252529	0	+	0.39	(0.36,0.39]	chr12	512136	27	INTRON	INTRON	LEMD3	ENSG00000174106.3	ENST00000308330.3:ENST00000541171.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.56926	4.83483	5.1004	0.0526991	0.031369	0.14912	0.127822
chrX	72467191	72467290	8063158	0	-	0.383838	(0.36,0.39]	chrX	841375	6	UTR3	UTR3:EXON_MRNA:INTRON	HDAC8	ENSG00000147099.21	ENST00000373583.6:ENST00000373573.9:ENST00000648850.1:ENST00000648452.1:ENST00000649097.1:ENST00000647886.1:ENST00000648855.1:ENST00000647654.1:ENST00000648939.1:ENST00000648504.1:ENST00000648459.1:ENST00000373589.9:ENST00000650604.1:ENST00000647594.1:ENST00000647980.1:ENST00000647859.1:ENST00000650076.1:ENST00000648731.1:ENST00000649181.1:ENST00000649274.1:ENST00000650471.1:ENST00000647641.1:ENST00000649543.1:ENST00000373568.7:ENST00000648139.1:ENST00000648834.1:ENST00000648711.1:ENST00000436675.6:ENST00000647606.1:ENST00000415409.6:ENST00000478743.2:ENST00000648298.1:ENST00000648870.1:ENST00000649116.1:ENST00000649752.1:ENST00000647718.1:ENST00000649242.1:ENST00000649518.1:ENST00000648285.1:ENST00000412342.6:ENST00000373571.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.56926	4.83483	5.1004	0.0526991	0.031369	0.14912	0.127822
chr10	112694369	112694469	4588944	0	+	0.44	(0.419,0.45]	chr10	438722	250	INTRON	INTRON	VTI1A	ENSG00000151532.14	ENST00000393077.3:ENST00000432306.5	protein_coding	protein_coding	protein_coding	protein_coding	1	101	2	3.87872	4.8347999999999995	5.79088	0.022052	0.00421639	0.101502	0.0380856
chr1	44802107	44802183	114928	0	+	0.552632	(0.523,0.58]	chr1	14240	2	SS5_PROX	SS5_PROX:INTRON	PLK3	ENSG00000173846.13	ENST00000372201.5:ENST00000465443.5:ENST00000476731.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.58058	4.8347	5.08882	0.0860403	0.00834774	0.181766	0.0598672
chrX	1424428	1424527	7965727	0	-	0.565657	(0.523,0.58]	chrX	834272	22	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.58058	4.8347	5.08882	0.0860403	0.00834774	0.181766	0.0598672
chrX	153451200	153451300	8122225	0	-	0.53	(0.523,0.58]	chrX	846175	29	INTRON	INTRON	HAUS7	ENSG00000213397.12	ENST00000370211.10:ENST00000484394.5:ENST00000435662.1:ENST00000460898.5:ENST00000437046.6:ENST00000491286.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.58058	4.8347	5.08882	0.0860403	0.00834774	0.181766	0.0598672
chr7	131472465	131472564	3484903	0	+	0.353535	(0.33,0.36]	chr7	336594	3	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5:ENST00000498778.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	118	2	3.43786	4.83452	6.23118	0.0264583	6.87319e-4	0.111024	0.0109073
chr8	17904696	17904795	3946852	0	-	0.434343	(0.419,0.45]	chr8	377064	79	INTRON	INTRON	FGL1	ENSG00000104760.17	ENST00000398056.6	protein_coding	protein_coding	protein_coding	protein_coding	11	1285	2	4.70878	4.834205	4.95963	5.47374e-4	2.37631e-5	0.0136476	9.54764e-4
chr13	20856661	20856760	5664429	0	-	0.535354	(0.523,0.58]	chr13	556376	5	INTRON	INTRON	XPO4	ENSG00000132953.18	ENST00000255305.11:ENST00000490513.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	94	2	3.78755	4.834135	5.88072	0.0126258	0.00401039	0.0761905	0.0371192
chr12	31283767	31283866	5405631	0	-	0.353535	(0.33,0.36]	chr12	529415	5	INTRON	INTRON	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000448582.6:ENST00000454658.6:ENST00000544921.5:ENST00000542983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	99	2	4.02105	4.834035	5.64702	0.0212683	0.0026239	0.0996805	0.0278348
chr1	44244959	44245058	459622	0	-	0.545455	(0.523,0.58]	chr1	55307	25	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.7629	4.83395	4.905	0.0563605	0.0167014	0.154188	0.0917029
chr16	25138181	25138281	6426860	0	+	0.54	(0.523,0.58]	chr16	635895	53	INTRON	INTRON	LCMT1	ENSG00000205629.12	ENST00000380962.9:ENST00000564011.5:ENST00000380966.8:ENST00000399069.8:ENST00000577157.1:ENST00000570981.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.7629	4.83395	4.905	0.0563605	0.0167014	0.154188	0.0917029
chr16	85585833	85585933	6518931	0	+	0.55	(0.523,0.58]	chr16	646396	291	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.7629	4.83395	4.905	0.0563605	0.0167014	0.154188	0.0917029
chr22	45290818	45290916	7738857	0	+	0.55102	(0.523,0.58]	chr22	811371	13	INTRON	INTRON	UPK3A	ENSG00000100373.10	ENST00000216211.9:ENST00000396082.2	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.7629	4.83395	4.905	0.0563605	0.0167014	0.154188	0.0917029
chr7	47328573	47328673	3587074	0	-	0.57	(0.523,0.58]	chr7	346016	232	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.7629	4.83395	4.905	0.0563605	0.0167014	0.154188	0.0917029
chr7	139704743	139704842	3723193	0	-	0.646465	(0.58,1]	chr7	357498	727	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	4	394	2	4.59011	4.833905	5.0777	6.46954e-4	1.17856e-5	0.0149571	5.78758e-4
chr17	57549498	57549598	6762710	0	+	0.41	(0.39,0.419]	chr17	682152	194	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1:ENST00000674898.1:ENST00000674574.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.56871	4.833885	5.09906	0.0535378	0.0315133	0.150319	0.127889
chr8	10329972	10330071	3757775	0	+	0.393939	(0.39,0.419]	chr8	360944	30	INTRON	INTRON	MSRA	ENSG00000175806.15	ENST00000317173.9:ENST00000441698.6:ENST00000518255.5:ENST00000528246.5:ENST00000382490.9:ENST00000521686.1:ENST00000517594.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.56871	4.833885	5.09906	0.0535378	0.0315133	0.150319	0.127889
chr19	44946375	44946475	7269155	0	+	0.5	(0.485,0.523]	chr19	746443	3	SS5_PROX	SS5_PROX:INTRON	APOC4-APOC2:APOC2	ENSG00000224916.9:ENSG00000234906.11	ENST00000585685.5:ENST00000589057.5:ENST00000592257.5:ENST00000252490.7:ENST00000591597.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	96	2	3.54218	4.8336950000000005	6.12521	0.00823189	0.00747698	0.0608959	0.0555092
chr2	78150526	78150626	1208955	0	-	0.31	(0.29,0.33]	chr2	130071	2103	INTRON	INTRON	ENSG00000227088	ENSG00000227088.2	ENST00000667782.1	lncRNA	lncRNA	lncRNA	lncRNA	3	153	2	3.18274	4.83362	6.4845	0.00381896	0.0036728	0.0398603	0.0347315
chr22	25156629	25156729	7700601	0	+	0.35	(0.33,0.36]	chr22	805914	438	INTRON	INTRON	KIAA1671	ENSG00000197077.14	ENST00000358431.8:ENST00000406486.8:ENST00000494730.2:ENST00000401395.1:ENST00000637069.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.49572	4.83362	5.17152	0.103264	0.00887848	0.197541	0.0618231
chrX	2393672	2393772	7967781	0	-	0.64	(0.58,1]	chrX	834361	8	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	218	2	4.61722	4.833575	5.04993	0.00168213	6.39597e-5	0.0254081	0.00196197
chr20	37189445	37189545	7471703	0	+	0.38	(0.36,0.39]	chr20	777984	47	INTRON	INTRON	RPN2	ENSG00000118705.17	ENST00000456102.5:ENST00000373622.9:ENST00000373632.8:ENST00000237530.11:ENST00000462163.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.56076	4.83342	5.10608	0.103289	0.0111429	0.197541	0.071709
chr17	61397738	61397838	6939777	0	-	0.46	(0.45,0.485]	chr17	707563	24	INTRON	INTRON	TBX2-AS1	ENSG00000267280.6	ENST00000591313.6:ENST00000590421.1:ENST00000592009.1:ENST00000589814.5	lncRNA	lncRNA	lncRNA	lncRNA	1	98	2	4.0881	4.8333200000000005	5.57854	0.0230065	0.00202979	0.102982	0.0232814
chr13	113215560	113215659	5657363	0	+	0.575758	(0.523,0.58]	chr13	555523	51	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000488558.2:ENST00000375440.9:ENST00000474116.5:ENST00000494985.5:ENST00000463426.5:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	94	2	3.87732	4.83328	5.78924	0.0147166	0.00318505	0.0826843	0.0316631
chr14	39275039	39275137	5792252	0	+	0.306122	(0.29,0.33]	chr14	567494	72	INTRON	INTRON	MIA2	ENSG00000150527.18	ENST00000553728.1:ENST00000640607.2:ENST00000554392.5:ENST00000555716.5:ENST00000341749.7:ENST00000557038.5:ENST00000396165.8:ENST00000556990.1:ENST00000396158.6:ENST00000280083.7:ENST00000341502.9:ENST00000556148.5:ENST00000348007.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	113	2	3.38863	4.8332049999999995	6.27778	0.0255093	4.58752e-4	0.108923	0.00821903
chrX	133655734	133655834	8112713	0	-	0.32	(0.29,0.33]	chrX	845480	588	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000692074.1:ENST00000667662.1:ENST00000666017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.75412	4.833145	4.91217	0.0522244	0.0180435	0.148503	0.0952934
chr2	239394880	239394980	1392661	0	-	0.49	(0.485,0.523]	chr2	148759	416	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.581	4.83314	5.08528	0.085711	0.0086528	0.181766	0.0612699
chr6	11043228	11043328	3093175	0	-	0.49	(0.485,0.523]	chr6	300390	321	INTRON	INTRON	ELOVL2	ENSG00000197977.4	ENST00000354666.4	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.581	4.83314	5.08528	0.085711	0.0086528	0.181766	0.0612699
chr13	26362360	26362460	5552273	0	+	0.48	(0.45,0.485]	chr13	547934	81	INTRON	INTRON	CDK8	ENSG00000132964.12	ENST00000536792.5:ENST00000381527.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	96	2	3.76457	4.83312	5.90167	0.0137135	0.00463252	0.0799457	0.0408278
chr2	105765670	105765770	868775	0	+	0.32	(0.29,0.33]	chr2	98078	194	INTRON	INTRON	NCK2	ENSG00000071051.14	ENST00000233154.9:ENST00000451463.6:ENST00000393348.6	protein_coding	protein_coding	protein_coding	protein_coding	1	95	2	3.66355	4.83258	6.00161	0.00923185	0.00571018	0.0644666	0.0467736
chr3	186314131	186314230	1974354	0	-	0.343434	(0.33,0.36]	chr3	200718	68	INTRON	INTRON	DGKG	ENSG00000058866.15	ENST00000265022.8:ENST00000344484.8:ENST00000382164.8:ENST00000480809.5:ENST00000466466.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.65869	4.832555	5.00642	0.0542065	0.0248983	0.151733	0.114418
chr1	156265186	156265280	600881	0	-	0.404255	(0.39,0.419]	chr1	70829	13	INTRON	INTRON	SMG5	ENSG00000198952.8	ENST00000361813.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.55943	4.83247	5.10551	0.104562	0.0112089	0.19835	0.071709
chr11	47508677	47508776	5035957	0	-	0.393939	(0.39,0.419]	chr11	487581	14	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.55943	4.83247	5.10551	0.104562	0.0112089	0.19835	0.071709
chr2	232582772	232582869	1055269	0	+	0.412371	(0.39,0.419]	chr2	114733	18	UTR3	UTR3:EXON_MRNA	EIF4E2	ENSG00000135930.15	ENST00000687222.1:ENST00000690794.1:ENST00000409098.5:ENST00000409514.5:ENST00000459714.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.55943	4.83247	5.10551	0.104562	0.0112089	0.19835	0.071709
chr20	47351409	47351509	7570845	0	-	0.4	(0.39,0.419]	chr20	791099	3	SS5_PROX	SS5_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.55943	4.83247	5.10551	0.104562	0.0112089	0.19835	0.071709
chrX	19773368	19773467	7991776	0	-	0.40404	(0.39,0.419]	chrX	836072	258	INTRON	INTRON	SH3KBP1	ENSG00000147010.18	ENST00000397821.8:ENST00000379698.8:ENST00000379697.7	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.55943	4.83247	5.10551	0.104562	0.0112089	0.19835	0.071709
chr19	48903265	48903362	7280376	0	+	0.494845	(0.485,0.523]	chr19	748036	18	INTRON	INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000443560.1:ENST00000411700.5:ENST00000451312.5:ENST00000424608.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.75939	4.832405	4.90542	0.0561086	0.0172254	0.154188	0.0923809
chr2	241303522	241303622	1396928	0	-	0.5	(0.485,0.523]	chr2	149481	9	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000310931.10:ENST00000391976.6:ENST00000428482.5:ENST00000441124.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000420451.5:ENST00000417540.5:ENST00000462130.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.75939	4.832405	4.90542	0.0561086	0.0172254	0.154188	0.0923809
chr21	45444132	45444232	7630704	0	+	0.52	(0.485,0.523]	chr21	797656	383	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.75939	4.832405	4.90542	0.0561086	0.0172254	0.154188	0.0923809
chr3	186103705	186103805	1972212	0	-	0.41	(0.39,0.419]	chr3	200543	80	INTRON	INTRON	ETV5	ENSG00000244405.8	ENST00000306376.10:ENST00000434744.5:ENST00000472868.6:ENST00000440773.5:ENST00000421809.5:ENST00000413301.5:ENST00000422039.1:ENST00000476890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	139	2	3.74786	4.83239	5.91692	0.0162442	0.00182261	0.0873195	0.021657
chr1	61171724	61171824	146999	0	+	0.44	(0.419,0.45]	chr1	17147	388	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	102	2	4.00263	4.832375	5.66212	0.0266819	0.00312051	0.111563	0.0311915
chr7	139304736	139304836	3504701	0	+	0.33	(0.29,0.33]	chr7	337822	70	UTR3	UTR3:EXON_MRNA	UBN2	ENSG00000157741.15	ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	2	129	2	3.1222	4.832085	6.54197	0.00748511	0.00342504	0.0555671	0.0375105
chr3	53237496	53237596	1783975	0	-	0.38	(0.36,0.39]	chr3	185954	3	SS5_PROX	SS5_PROX:INTRON	TKT	ENSG00000163931.17	ENST00000462138.6:ENST00000423525.6:ENST00000423516.5:ENST00000450814.6:ENST00000469678.1:ENST00000472528.5:ENST00000487660.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	99	2	3.77418	4.8319	5.88962	0.0166261	0.00513898	0.0884836	0.0435696
chr14	99562637	99562737	6052498	0	-	0.6	(0.58,1]	chr14	593891	262	INTRON	INTRON	CCDC85C	ENSG00000205476.9	ENST00000380243.9:ENST00000554996.5:ENST00000554877.1:ENST00000556348.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.18518	4.831785	5.47839	0.0374658	0.0145198	0.139793	0.0823104
chr17	38875306	38875405	6729624	0	+	0.616162	(0.58,1]	chr17	676433	8	INTRON	INTRON	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000585841.5:ENST00000318008.11:ENST00000443937.7:ENST00000584106.1:ENST00000435347.7:ENST00000419929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	47	2	4.18518	4.831785	5.47839	0.0374658	0.0145198	0.139793	0.0823104
chr19	34382597	34382697	7243176	0	+	0.64	(0.58,1]	chr19	741718	6	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	47	2	4.18518	4.831785	5.47839	0.0374658	0.0145198	0.139793	0.0823104
chr12	45804419	45804519	5215932	0	+	0.41	(0.39,0.419]	chr12	506511	282	INTRON	INTRON	ARID2	ENSG00000189079.17	ENST00000334344.11:ENST00000422737.6	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.72276	4.83168	4.9406	0.0658437	0.0238104	0.162385	0.111436
chr7	128325417	128325517	3704920	0	-	0.4	(0.39,0.419]	chr7	355896	2	SS5_PROX	SS5_PROX:INTRON	RBM28	ENSG00000106344.8	ENST00000223073.6:ENST00000415472.6:ENST00000487602.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.72276	4.83168	4.9406	0.0658437	0.0238104	0.162385	0.111436
chr7	129940910	129941009	3707620	0	-	0.40404	(0.39,0.419]	chr7	356243	33	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.72276	4.83168	4.9406	0.0658437	0.0238104	0.162385	0.111436
chrY	14526135	14526235	8140696	0	+	0.4	(0.39,0.419]	chrY	848284	8	INTRON	INTRON	NLGN4Y	ENSG00000165246.15	ENST00000643089.1:ENST00000471252.1:ENST00000382872.5:ENST00000355905.6:ENST00000382868.5:ENST00000476359.1:ENST00000645399.1:ENST00000684976.1:ENST00000481089.1:ENST00000339174.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.72276	4.83168	4.9406	0.0658437	0.0238104	0.162385	0.111436
chr19	17146189	17146288	7218908	0	+	0.464646	(0.45,0.485]	chr19	737731	3	INTRON	INTRON	MYO9B	ENSG00000099331.14	ENST00000682292.1:ENST00000595618.5:ENST00000594824.5:ENST00000397274.6:ENST00000595641.5	protein_coding	protein_coding	protein_coding	protein_coding	1	121	2	3.73584	4.831445	5.92705	0.015867	0.00129636	0.0859576	0.0170746
chr14	54756586	54756685	5821353	0	+	0.464646	(0.45,0.485]	chr14	569119	13	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555192.1	protein_coding	protein_coding	protein_coding	protein_coding	2	129	2	3.29511	4.831390000000001	6.36767	0.00618594	0.00504904	0.0519442	0.0432173
chr11	70536730	70536830	5059640	0	-	0.45	(0.419,0.45]	chr11	492663	334	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.62273	4.831385	5.04004	0.103601	0.0137308	0.197541	0.0814223
chr16	58162780	58162878	6598368	0	-	0.438776	(0.419,0.45]	chr16	659848	34	EXON_MRNA	EXON_MRNA:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	44	2	4.62273	4.831385	5.04004	0.103601	0.0137308	0.197541	0.0814223
chr2	32629831	32629926	750498	0	+	0.431579	(0.419,0.45]	chr2	87592	11	INTRON	INTRON	TTC27	ENSG00000018699.13	ENST00000448773.5:ENST00000317907.9:ENST00000647819.1:ENST00000454690.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.62273	4.831385	5.04004	0.103601	0.0137308	0.197541	0.0814223
chr2	43454550	43454650	1133862	0	-	0.45	(0.419,0.45]	chr2	123988	239	INTRON	INTRON	THADA	ENSG00000115970.19	ENST00000405975.7:ENST00000407351.5:ENST00000398653.5:ENST00000405006.8:ENST00000408045.7:ENST00000402796.5:ENST00000485353.5:ENST00000469323.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.62273	4.831385	5.04004	0.103601	0.0137308	0.197541	0.0814223
chr3	152357506	152357606	1599275	0	+	0.44	(0.419,0.45]	chr3	168991	219	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.62273	4.831385	5.04004	0.103601	0.0137308	0.197541	0.0814223
chr4	152849546	152849646	2149457	0	+	0.43	(0.419,0.45]	chr4	217819	195	INTRON	INTRON	ARFIP1	ENSG00000164144.16	ENST00000451320.6:ENST00000429148.6:ENST00000353617.7:ENST00000405727.6:ENST00000356064.3	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.62273	4.831385	5.04004	0.103601	0.0137308	0.197541	0.0814223
chr10	32906009	32906100	4663674	0	-	0.263736	[0,0.29]	chr10	445221	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000494395.1:ENST00000474568.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.61749	4.831335	5.04518	0.061376	0.00813784	0.158506	0.0588114
chr7	55067639	55067739	3372032	0	+	0.24	[0,0.29]	chr7	325289	237	INTRON	INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000463948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	107	2	3.60849	4.831105	6.05372	0.0141527	6.26327e-4	0.0814781	0.0102225
chr8	28891019	28891119	3785487	0	+	0.47	(0.45,0.485]	chr8	364663	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000558662.5:ENST00000519662.5:ENST00000397358.7:ENST00000560599.5:ENST00000523613.5:ENST00000560357.5:ENST00000521516.5:ENST00000519047.5:ENST00000560269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	97	2	3.57078	4.83104	6.0913	0.00998516	0.00740503	0.0673647	0.0553519
chr19	16559406	16559505	7344794	0	-	0.434343	(0.419,0.45]	chr19	760825	24	INTRON	INTRON	SLC35E1	ENSG00000127526.15	ENST00000595753.6:ENST00000409648.8:ENST00000436553.6:ENST00000600356.1:ENST00000470077.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.78575	4.830865	4.87598	0.0768574	0.0224633	0.174882	0.108193
chr2	235519027	235519127	1062786	0	+	0.42	(0.419,0.45]	chr2	115651	238	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.78575	4.830865	4.87598	0.0768574	0.0224633	0.174882	0.108193
chr6	499444	499544	3077134	0	-	0.45	(0.419,0.45]	chr6	299292	4	SS5_PROX	SS5_PROX:INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.78575	4.830865	4.87598	0.0768574	0.0224633	0.174882	0.108193
chr10	34672334	34672434	4670377	0	-	0.47	(0.45,0.485]	chr10	445529	1548	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.7111	4.830830000000001	4.95056	0.0781398	0.0127826	0.175203	0.0773423
chr12	2986840	2986940	5157952	0	+	0.46	(0.45,0.485]	chr12	501258	261	INTRON	INTRON	TEAD4	ENSG00000197905.10	ENST00000358409.7:ENST00000359864.8:ENST00000540314.2:ENST00000536826.2:ENST00000543035.6:ENST00000397122.6:ENST00000443986.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.7111	4.830830000000001	4.95056	0.0781398	0.0127826	0.175203	0.0773423
chr2	232838364	232838463	1056742	0	+	0.474747	(0.45,0.485]	chr2	114952	49	INTRON	INTRON	GIGYF2	ENSG00000204120.16	ENST00000629305.2:ENST00000409480.5:ENST00000373563.9:ENST00000409547.5:ENST00000409196.7:ENST00000409451.7:ENST00000677591.1:ENST00000678230.1:ENST00000678339.1:ENST00000677450.1:ENST00000678466.1:ENST00000678885.1:ENST00000676848.1:ENST00000474312.5:ENST00000469843.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	43	2	4.7111	4.830830000000001	4.95056	0.0781398	0.0127826	0.175203	0.0773423
chr9	6942546	6942634	4116807	0	+	0.477273	(0.45,0.485]	chr9	391904	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000438023.5:ENST00000381306.7:ENST00000381309.8:ENST00000543771.5:ENST00000496464.1:ENST00000428870.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.7111	4.830830000000001	4.95056	0.0781398	0.0127826	0.175203	0.0773423
chr6	137869226	137869325	3010379	0	+	0.484848	(0.45,0.485]	chr6	294494	11	INTRON	INTRON	TNFAIP3	ENSG00000118503.16	ENST00000421450.1:ENST00000612899.5:ENST00000420009.5:ENST00000237289.8:ENST00000433680.1	protein_coding	protein_coding	protein_coding	protein_coding	1	99	2	3.42543	4.83076	6.23609	0.0103881	0.00778782	0.0682598	0.0590114
chr14	94307105	94307202	6046243	0	-	0.463918	(0.45,0.485]	chr14	593049	5	INTRON	INTRON	SERPINA6	ENSG00000170099.6	ENST00000341584.4:ENST00000555056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.77571	4.830690000000001	4.88567	0.0719884	0.0146126	0.168159	0.0837727
chr16	8857174	8857270	6546169	0	-	0.5	(0.485,0.523]	chr16	651451	15	INTRON	INTRON	CARHSP1	ENSG00000153048.11	ENST00000396593.6:ENST00000611932.4:ENST00000618335.4:ENST00000619881.4:ENST00000610831.4:ENST00000614449.4:ENST00000311052.10:ENST00000561530.5:ENST00000567554.5:ENST00000565287.5:ENST00000567908.5:ENST00000570125.5:ENST00000568117.5:ENST00000568968.1	protein_coding	protein_coding	protein_coding	protein_coding	1	95	2	3.61303	4.830690000000001	6.04835	0.00941539	0.00630038	0.0653252	0.0501647
chr6	148537868	148537967	3034572	0	+	0.474747	(0.45,0.485]	chr6	296005	26	INTRON	INTRON	SASH1	ENSG00000111961.19	ENST00000367467.8	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.77571	4.830690000000001	4.88567	0.0719884	0.0146126	0.168159	0.0837727
chrX	2225627	2225727	7966094	0	-	0.48	(0.45,0.485]	chrX	834328	40	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.77571	4.830690000000001	4.88567	0.0719884	0.0146126	0.168159	0.0837727
chr17	82566287	82566384	6817244	0	+	0.608247	(0.58,1]	chr17	689051	24	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1:ENST00000531030.5:ENST00000526383.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	87	2	3.82654	4.830145	5.83375	0.00751249	0.00275362	0.0576451	0.0285628
chr10	79292862	79292962	4534297	0	+	0.64	(0.58,1]	chr10	432487	1	SS3_PROX	SS3_PROX:INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10:ENST00000478357.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	91	2	3.44157	4.830045	6.21852	0.00760198	0.00350812	0.0561937	0.0379357
chr19	34390595	34390695	7243256	0	+	0.5	(0.485,0.523]	chr19	741718	86	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	113	2	2.91537	4.82991	6.74445	0.0298565	0.00264613	0.126732	0.032596
chr7	47475807	47475906	3588566	0	-	0.535354	(0.523,0.58]	chr7	346123	227	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	114	2	3.42417	4.829585	6.235	0.0252027	4.59688e-4	0.108002	0.00821903
chr5	73783537	73783636	2453269	0	+	0.555556	(0.523,0.58]	chr5	244950	24	INTRON	INTRON	ARHGEF28	ENSG00000214944.10	ENST00000545377.5:ENST00000296794.10:ENST00000513042.7:ENST00000426542.6:ENST00000437974.5	protein_coding	protein_coding	protein_coding	protein_coding	1	94	2	3.93421	4.82954	5.72487	0.0163679	0.00274644	0.0875379	0.028553
chr10	75728047	75728147	4523444	0	+	0.46	(0.45,0.485]	chr10	432271	801	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	134	2	3.78564	4.829034999999999	5.87243	0.0143887	0.00138394	0.0821732	0.0178817
chr7	23371151	23371250	3552209	0	-	0.494949	(0.485,0.523]	chr7	343200	81	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	252	2	4.71723	4.8289100000000005	4.94059	0.00236637	1.63137e-4	0.0306624	0.00391234
chr17	6921679	6921779	6675888	0	+	0.59	(0.58,1]	chr17	669364	196	INTRON	INTRON	ALOX12P2	ENSG00000262943.8	ENST00000574183.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	44	2	4.3962	4.82879	5.26138	0.0250928	0.021217	0.114418	0.0996078
chr19	437465	437559	7303562	0	-	0.648936	(0.58,1]	chr19	752509	4	INTRON	INTRON	SHC2	ENSG00000129946.11	ENST00000264554.11:ENST00000590222.5:ENST00000590113.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.3962	4.82879	5.26138	0.0250928	0.021217	0.114418	0.0996078
chr22	42648410	42648506	7821316	0	-	0.614583	(0.58,1]	chr22	820391	15	INTRON	INTRON	CYB5R3	ENSG00000100243.22	ENST00000693367.1:ENST00000352397.10:ENST00000361740.9:ENST00000692152.1:ENST00000693363.1:ENST00000689795.1:ENST00000686523.1:ENST00000407332.6:ENST00000687183.1:ENST00000691295.1:ENST00000690835.1:ENST00000689195.1:ENST00000688244.1:ENST00000690993.1:ENST00000689239.1:ENST00000692344.1:ENST00000686129.1:ENST00000466276.2:ENST00000693716.1:ENST00000688004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.3962	4.82879	5.26138	0.0250928	0.021217	0.114418	0.0996078
chr9	134358995	134359095	4261013	0	+	0.66	(0.58,1]	chr9	406311	320	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.3962	4.82879	5.26138	0.0250928	0.021217	0.114418	0.0996078
chr7	23410467	23410566	3552605	0	-	0.50505	(0.485,0.523]	chr7	343215	50	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	127	2	3.55748	4.82876	6.10004	0.00860355	0.00236572	0.0623467	0.0259199
chr16	11077919	11078019	6386656	0	+	0.44	(0.419,0.45]	chr16	631735	165	INTRON	INTRON	CLEC16A	ENSG00000038532.16	ENST00000409790.6:ENST00000409552.4:ENST00000465491.5:ENST00000646363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	101	2	3.92957	4.828755	5.72794	0.0242188	0.00372951	0.106588	0.0351254
chr10	100549931	100550030	4569165	0	+	0.414141	(0.39,0.419]	chr10	436105	19	UTR3	UTR3:EXON_MRNA	HIF1AN	ENSG00000166135.14	ENST00000299163.7	protein_coding	protein_coding	protein_coding	protein_coding	3	365	2	4.7267	4.8286999999999995	4.9307	0.00315623	6.5254e-5	0.035937	0.00199402
chr15	66428330	66428429	6137106	0	+	0.434343	(0.419,0.45]	chr15	603713	260	INTRON	INTRON	MAP2K1	ENSG00000169032.11	ENST00000425818.2:ENST00000689951.1:ENST00000685763.1:ENST00000307102.10:ENST00000691576.1:ENST00000686347.1:ENST00000691077.1:ENST00000687191.1:ENST00000691937.1:ENST00000692487.1:ENST00000685172.1:ENST00000692683.1:ENST00000684779.1:ENST00000693150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	48	2	4.29342	4.828685	5.36395	0.0526662	0.0407485	0.167062	0.135868
chr1	7498600	7498700	15596	0	+	0.4	(0.39,0.419]	chr1	1895	303	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.09132	4.82825	5.56518	0.0689553	0.027797	0.193274	0.112962
chr10	18558067	18558167	4642309	0	-	0.4	(0.39,0.419]	chr10	443321	57	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	51	2	4.09132	4.82825	5.56518	0.0689553	0.027797	0.193274	0.112962
chr2	88625121	88625217	1215850	0	-	0.46875	(0.45,0.485]	chr2	131043	3	INTRON	INTRON	EIF2AK3	ENSG00000172071.15	ENST00000303236.9:ENST00000652099.1:ENST00000682892.1:ENST00000652423.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	50	2	4.11446	4.8281600000000005	5.54186	0.0592571	0.0243502	0.176157	0.106588
chr5	32298968	32299068	2631402	0	-	0.48	(0.45,0.485]	chr5	261138	21	INTRON	INTRON	MTMR12	ENSG00000150712.11	ENST00000280285.9:ENST00000382142.8:ENST00000264934.5:ENST00000505419.5:ENST00000513622.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.64346	4.8280650000000005	5.01267	0.0850039	0.011221	0.181766	0.071709
chr8	130428101	130428200	4083483	0	-	0.474747	(0.45,0.485]	chr8	388192	4	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000524299.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.64346	4.8280650000000005	5.01267	0.0850039	0.011221	0.181766	0.071709
chr5	80440532	80440623	2465527	0	+	0.285714	[0,0.29]	chr5	246293	1	INTRON	INTRON	ZFYVE16	ENSG00000039319.17	ENST00000338008.9:ENST00000510158.5:ENST00000512558.5:ENST00000505560.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	91	2	3.70802	4.827925	5.94783	0.00660506	0.0045429	0.0539418	0.0401487
chr12	132521238	132521338	5352826	0	+	0.66	(0.58,1]	chr12	523658	94	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.49116	4.827845	5.16453	0.0249802	0.0207449	0.10758	0.102713
chr18	77119821	77119920	7181519	0	-	0.59596	(0.58,1]	chr18	730186	142	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1:ENST00000583798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.49116	4.827845	5.16453	0.0249802	0.0207449	0.10758	0.102713
chr5	139651266	139651366	2549673	0	+	0.61	(0.58,1]	chr5	253167	1	SS5_PROX	SS5_PROX:INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.49116	4.827845	5.16453	0.0249802	0.0207449	0.10758	0.102713
chr5	150511916	150512016	2565130	0	+	0.65	(0.58,1]	chr5	254953	33	INTRON	INTRON	NDST1	ENSG00000070614.15	ENST00000522491.1:ENST00000519157.1:ENST00000524161.1:ENST00000523767.5:ENST00000518299.1:ENST00000518346.1:ENST00000261797.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.49116	4.827845	5.16453	0.0249802	0.0207449	0.10758	0.102713
chrX	1597115	1597213	7830215	0	+	0.602041	(0.58,1]	chrX	822080	12	INTRON	INTRON	AKAP17A	ENSG00000197976.12	ENST00000313871.9:ENST00000474361.6:ENST00000381261.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.49116	4.827845	5.16453	0.0249802	0.0207449	0.10758	0.102713
chr2	15496085	15496185	1093314	0	-	0.36	(0.33,0.36]	chr2	119088	67	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000427792.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.49588	4.827595	5.15931	0.043896	0.033477	0.139792	0.133139
chr1	94919783	94919882	539032	0	-	0.585859	(0.58,1]	chr1	62841	159	INTRON	INTRON	CNN3	ENSG00000117519.16	ENST00000394202.8:ENST00000545882.5:ENST00000370206.9:ENST00000415017.1:ENST00000474409.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.6951	4.82662	4.95814	0.0521567	0.0074469	0.148503	0.0553519
chr1	228152190	228152289	358108	0	+	0.646465	(0.58,1]	chr1	40434	18	INTRON	INTRON	GJC2	ENSG00000198835.4	ENST00000366714.3	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.6951	4.82662	4.95814	0.0521567	0.0074469	0.148503	0.0553519
chr12	121514984	121515082	5527597	0	-	0.622449	(0.58,1]	chr12	544601	12	INTRON	INTRON	KDM2B	ENSG00000089094.20	ENST00000377071.9:ENST00000377069.8:ENST00000611216.4:ENST00000538503.5:ENST00000543025.5:ENST00000538046.6:ENST00000446152.6:ENST00000542030.5:ENST00000538379.5:ENST00000545022.5:ENST00000541318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.6951	4.82662	4.95814	0.0521567	0.0074469	0.148503	0.0553519
chr19	2333404	2333504	7189453	0	+	0.63	(0.58,1]	chr19	731774	26	INTRON	INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.6951	4.82662	4.95814	0.0521567	0.0074469	0.148503	0.0553519
chr19	33202547	33202647	7240896	0	+	0.6	(0.58,1]	chr19	741404	3	SS3_PROX	SS3_PROX:INTRON	LRP3	ENSG00000130881.14	ENST00000592484.5:ENST00000253193.9:ENST00000590275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.6951	4.82662	4.95814	0.0521567	0.0074469	0.148503	0.0553519
chr6	36679339	36679439	2906382	0	+	0.65	(0.58,1]	chr6	285234	4	SS5_PROX	SS5_PROX:INTRON	CDKN1A	ENSG00000124762.14	ENST00000615513.4:ENST00000448526.6:ENST00000459970.1:ENST00000405375.5:ENST00000244741.10:ENST00000373711.3:ENST00000478800.1:ENST00000462537.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.6951	4.82662	4.95814	0.0521567	0.0074469	0.148503	0.0553519
chr13	113506856	113506955	5658345	0	+	0.585859	(0.58,1]	chr13	555703	9	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000462877.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.76284	4.826454999999999	4.89007	0.0471737	0.00872525	0.143232	0.0612699
chr16	8640630	8640730	6381026	0	+	0.6	(0.58,1]	chr16	631104	1	SS3_PROX	SS3_PROX:INTRON	METTL22	ENSG00000067365.15	ENST00000163678.11:ENST00000381920.8:ENST00000561758.5:ENST00000568967.5:ENST00000572956.5:ENST00000561993.5:ENST00000563501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.76284	4.826454999999999	4.89007	0.0471737	0.00872525	0.143232	0.0612699
chr19	1170239	1170339	7305755	0	-	0.7	(0.58,1]	chr19	753058	12	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.76284	4.826454999999999	4.89007	0.0471737	0.00872525	0.143232	0.0612699
chr7	47522337	47522437	3589036	0	-	0.62	(0.58,1]	chr7	346138	150	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.76284	4.826454999999999	4.89007	0.0471737	0.00872525	0.143232	0.0612699
chr9	133470265	133470362	4259759	0	+	0.649485	(0.58,1]	chr9	406088	17	UTR3	UTR3:EXON_MRNA	CACFD1	ENSG00000160325.15	ENST00000540581.5:ENST00000542192.5:ENST00000291722.11:ENST00000316948.9	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.76284	4.826454999999999	4.89007	0.0471737	0.00872525	0.143232	0.0612699
chr3	75457486	75457585	1503706	0	+	0.393939	(0.39,0.419]	chr3	160881	1	INTRON	INTRON	LINC02018	ENSG00000272690.6	ENST00000652894.1	lncRNA	lncRNA	lncRNA	lncRNA	0	49	2	4.20027	4.826255	5.45224	0.0583327	0.032783	0.175217	0.122593
chr19	18467704	18467803	7347868	0	-	0.545455	(0.523,0.58]	chr19	761486	14	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	137	2	4.25009	4.82617	5.40225	0.00583753	0.00404292	0.0505443	0.0371291
chr2	119766079	119766179	883652	0	+	0.5	(0.485,0.523]	chr2	100098	53	INTRON	INTRON	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000460162.1:ENST00000420482.5:ENST00000460289.5:ENST00000488279.6:ENST00000485247.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	94	2	3.7132	4.82613	5.93906	0.0113657	0.00492265	0.0723462	0.0423296
chr18	62253254	62253347	7078098	0	+	0.333333	(0.33,0.36]	chr18	721672	1	INTRON	INTRON	RELCH	ENSG00000134444.15	ENST00000644646.2:ENST00000256858.10:ENST00000398130.6:ENST00000587725.5:ENST00000591227.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	1	98	2	3.97108	4.826085	5.68109	0.0201622	0.00297798	0.0973366	0.0302932
chr2	232901061	232901161	1383849	0	-	0.55	(0.523,0.58]	chr2	147953	3	SS5_PROX	SS5_PROX:INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000416114.3:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.50593	4.825975	5.14602	0.094303	0.00734367	0.188571	0.0550721
chr21	43632191	43632286	7677395	0	-	0.568421	(0.523,0.58]	chr21	802574	14	INTRON	INTRON	HSF2BP	ENSG00000160207.9	ENST00000291560.7:ENST00000443485.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.50593	4.825975	5.14602	0.094303	0.00734367	0.188571	0.0550721
chr6	41705546	41705646	3132448	0	-	0.54	(0.523,0.58]	chr6	305479	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TFEB	ENSG00000112561.19	ENST00000358871.6:ENST00000373033.6:ENST00000230323.8:ENST00000677531.1:ENST00000403298.9:ENST00000420312.6:ENST00000424495.2:ENST00000678831.1:ENST00000419396.6:ENST00000416140.6:ENST00000419574.6:ENST00000445214.2:ENST00000678871.1:ENST00000394283.5:ENST00000679237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.50593	4.825975	5.14602	0.094303	0.00734367	0.188571	0.0550721
chr6	170327652	170327751	3075847	0	+	0.545455	(0.523,0.58]	chr6	299152	40	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.50593	4.825975	5.14602	0.094303	0.00734367	0.188571	0.0550721
chr7	74527540	74527640	3392109	0	+	0.54	(0.523,0.58]	chr7	327389	30	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6:ENST00000476977.5:ENST00000489094.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.50593	4.825975	5.14602	0.094303	0.00734367	0.188571	0.0550721
chr9	129339703	129339798	4250334	0	+	0.536842	(0.523,0.58]	chr9	404662	4	INTRON	INTRON	LINC01503	ENSG00000233901.7	ENST00000427109.2:ENST00000654735.1:ENST00000654190.1:ENST00000657886.1:ENST00000661745.1:ENST00000436710.6:ENST00000660635.1:ENST00000657651.1:ENST00000665063.2:ENST00000667257.1:ENST00000690929.1:ENST00000654148.1:ENST00000444125.3:ENST00000666671.1:ENST00000660036.1:ENST00000657393.1:ENST00000659864.1	lncRNA	lncRNA	lncRNA	lncRNA	0	43	2	4.50593	4.825975	5.14602	0.094303	0.00734367	0.188571	0.0550721
chr12	125121044	125121142	5349512	0	+	0.642857	(0.58,1]	chr12	523174	13	EXON_MRNA	EXON_MRNA:INTRON	AACS	ENSG00000081760.17	ENST00000316519.11:ENST00000441247.6:ENST00000316543.14:ENST00000539251.5:ENST00000538851.5:ENST00000545511.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	216	2	4.43794	4.82592	5.2139	0.00248717	3.67936e-5	0.0315244	0.00131168
chr2	216001754	216001854	1369301	0	-	0.45	(0.419,0.45]	chr2	145845	49	INTRON	INTRON	MREG:PECR	ENSG00000118242.16:ENSG00000115425.14	ENST00000263268.11:ENST00000620139.4:ENST00000439791.5:ENST00000424992.5:ENST00000420348.1:ENST00000442122.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.56048	4.8259050000000006	5.09133	0.0586308	0.0337332	0.155565	0.133139
chr1	236007830	236007930	693166	0	-	0.35	(0.33,0.36]	chr1	81538	136	INTRON	INTRON	NID1	ENSG00000116962.15	ENST00000366595.7:ENST00000264187.7	protein_coding	protein_coding	protein_coding	protein_coding	1	97	2	3.78113	4.825675	5.87022	0.0148989	0.00476732	0.0834354	0.0414524
chr17	17821520	17821619	6865736	0	-	0.535354	(0.523,0.58]	chr17	695915	6	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	128	2	3.09806	4.8256749999999995	6.55329	0.00764666	0.00382069	0.0563517	0.0398603
chr8	11853103	11853195	3936629	0	-	0.532609	(0.523,0.58]	chr8	376317	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000676952.1:ENST00000679121.1:ENST00000677283.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000524654.2:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6:ENST00000525315.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	104	2	3.13506	4.8254	6.51574	0.0186841	0.00409625	0.0976296	0.0413652
chr20	32478408	32478507	7543652	0	-	0.515152	(0.485,0.523]	chr20	787372	33	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.43249	4.825089999999999	5.21769	0.0359739	0.0322299	0.12988	0.127853
chr5	139651566	139651666	2549676	0	+	0.51	(0.485,0.523]	chr5	253167	4	SS5_PROX	SS5_PROX:INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.43249	4.825089999999999	5.21769	0.0359739	0.0322299	0.12988	0.127853
chr2	38576568	38576666	1124498	0	-	0.316327	(0.29,0.33]	chr2	123083	28	INTRON	INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000272249.7:ENST00000409328.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.51301	4.825085	5.13716	0.0885563	0.00805226	0.183874	0.0582806
chr18	69604995	69605095	7085225	0	+	0.42	(0.419,0.45]	chr18	722127	51	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	1	100	2	3.79893	4.825065	5.8512	0.0201381	0.00509983	0.0973365	0.0433857
chr1	155972545	155972644	599906	0	-	0.535354	(0.523,0.58]	chr1	70603	3	INTRON	INTRON	ARHGEF2	ENSG00000116584.22	ENST00000313695.11:ENST00000361247.9:ENST00000477754.2:ENST00000673475.1:ENST00000462460.6:ENST00000313667.8:ENST00000471589.5:ENST00000476273.1:ENST00000497907.5:ENST00000465079.1:ENST00000495070.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	43	2	4.68785	4.82491	4.96197	0.0521137	0.0194172	0.148503	0.0994526
chr13	25274985	25275084	5673327	0	-	0.535354	(0.523,0.58]	chr13	557343	4	INTRON	INTRON	MTMR6	ENSG00000139505.12	ENST00000381801.6	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.68785	4.82491	4.96197	0.0521137	0.0194172	0.148503	0.0994526
chr19	23323976	23324076	7358023	0	-	0.54	(0.523,0.58]	chr19	762771	135	INTRON	INTRON	ZNF91	ENSG00000167232.14	ENST00000596528.1:ENST00000596989.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	43	2	4.68785	4.82491	4.96197	0.0521137	0.0194172	0.148503	0.0994526
chr6	34588577	34588677	3124191	0	-	0.58	(0.523,0.58]	chr6	304700	14	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.68785	4.82491	4.96197	0.0521137	0.0194172	0.148503	0.0994526
chr16	50527337	50527436	6451207	0	+	0.464646	(0.45,0.485]	chr16	639838	4	INTRON	INTRON	ENSG00000260573	ENSG00000260573.4	ENST00000646992.1	lncRNA	lncRNA	lncRNA	lncRNA	4	177	2	3.01496	4.824865	6.63477	0.00418525	0.00382972	0.0399078	0.0379935
chr11	7576920	7576998	4792569	0	+	0.564103	(0.523,0.58]	chr11	459335	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	PPFIBP2	ENSG00000166387.14	ENST00000684123.1:ENST00000299492.9:ENST00000527790.5:ENST00000524548.5:ENST00000529575.5:ENST00000533792.5:ENST00000532926.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.34118	4.824565	5.30795	0.0372357	0.0315825	0.139793	0.120781
chr16	81687689	81687789	6510188	0	+	0.55	(0.523,0.58]	chr16	645979	87	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.34118	4.824565	5.30795	0.0372357	0.0315825	0.139793	0.120781
chr16	85402031	85402130	6517091	0	+	0.555556	(0.523,0.58]	chr16	646391	427	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.34118	4.824565	5.30795	0.0372357	0.0315825	0.139793	0.120781
chr17	77486024	77486124	6805242	0	+	0.55	(0.523,0.58]	chr17	686821	20	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.34118	4.824565	5.30795	0.0372357	0.0315825	0.139793	0.120781
chr12	121220332	121220430	5341272	0	+	0.489796	(0.485,0.523]	chr12	521600	27	INTRON	INTRON	P2RX4	ENSG00000135124.16	ENST00000359949.11:ENST00000543430.5:ENST00000337233.9:ENST00000543984.5:ENST00000499638.6:ENST00000543318.5:ENST00000540930.5:ENST00000538701.5:ENST00000542067.5:ENST00000541187.5:ENST00000538417.2:ENST00000314442.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.50634	4.82441	5.14248	0.0939553	0.00761903	0.188571	0.0561937
chr21	45473694	45473794	7631003	0	+	0.67	(0.58,1]	chr21	797669	4	SS3_PROX	SS3_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	4.13012	4.824125	5.51813	0.013519	0.00116063	0.0792526	0.0157704
chr17	314640	314740	6821422	0	-	0.54	(0.523,0.58]	chr17	689582	81	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	117	2	3.7036	4.823745	5.94389	0.0156851	0.0010207	0.0852152	0.0143498
chr3	45536946	45537045	1459521	0	+	0.434343	(0.419,0.45]	chr3	155820	125	INTRON	INTRON	LARS2	ENSG00000011376.12	ENST00000650792.2:ENST00000414984.5:ENST00000265537.8:ENST00000645846.2:ENST00000651549.1:ENST00000652135.1:ENST00000642274.1:ENST00000467936.5:ENST00000485461.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.7145	4.8237000000000005	4.9329	0.0716557	0.0256236	0.168159	0.115966
chr3	52871617	52871717	1781652	0	-	0.43	(0.419,0.45]	chr3	185677	158	INTRON	INTRON	STIMATE	ENSG00000213533.13	ENST00000355083.11:ENST00000467979.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.7145	4.8237000000000005	4.9329	0.0716557	0.0256236	0.168159	0.115966
chr8	98147937	98148031	3876994	0	+	0.43617	(0.419,0.45]	chr8	371602	9	INTRON	INTRON	POP1	ENSG00000104356.11	ENST00000401707.7:ENST00000349693.3	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.7145	4.8237000000000005	4.9329	0.0716557	0.0256236	0.168159	0.115966
chr16	85582637	85582736	6518899	0	+	0.646465	(0.58,1]	chr16	646396	259	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.62403	4.823585	5.02314	0.0578275	0.00638322	0.154343	0.0501889
chr16	87855034	87855133	6657024	0	-	0.59596	(0.58,1]	chr16	666007	28	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.62403	4.823585	5.02314	0.0578275	0.00638322	0.154343	0.0501889
chr17	81075168	81075268	6813772	0	+	0.61	(0.58,1]	chr17	688114	110	INTRON	INTRON	BAIAP2	ENSG00000175866.16	ENST00000321280.11:ENST00000576470.5:ENST00000575750.5:ENST00000428708.7:ENST00000572329.5:ENST00000575989.5:ENST00000570913.5:ENST00000575712.5:ENST00000575245.5:ENST00000321300.10:ENST00000435091.7:ENST00000573894.5:ENST00000571530.5:ENST00000572918.5:ENST00000573017.5:ENST00000575958.5:ENST00000573659.5:ENST00000572073.5:ENST00000573677.5:ENST00000574804.5:ENST00000576364.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.62403	4.823585	5.02314	0.0578275	0.00638322	0.154343	0.0501889
chr7	1009249	1009349	3526315	0	-	0.6	(0.58,1]	chr7	340566	83	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.62403	4.823585	5.02314	0.0578275	0.00638322	0.154343	0.0501889
chr8	143487046	143487146	4096463	0	-	0.63	(0.58,1]	chr8	389272	17	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6:ENST00000528401.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.62403	4.823585	5.02314	0.0578275	0.00638322	0.154343	0.0501889
chr9	133916661	133916761	4429567	0	-	0.61	(0.58,1]	chr9	423310	549	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.62403	4.823585	5.02314	0.0578275	0.00638322	0.154343	0.0501889
chr6	144434335	144434435	3021360	0	+	0.5	(0.485,0.523]	chr6	295188	42	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.68434	4.823365	4.96239	0.0518747	0.0200045	0.148503	0.100864
chr5	73699673	73699773	2452427	0	+	0.35	(0.33,0.36]	chr5	244920	144	INTRON	INTRON	ARHGEF28	ENSG00000214944.10	ENST00000545377.5:ENST00000296794.10:ENST00000513042.7:ENST00000509848.5:ENST00000426542.6:ENST00000437974.5	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.70894	4.823355	4.93777	0.0798152	0.0144674	0.176933	0.0833845
chr6	167892107	167892203	3074000	0	+	0.354167	(0.33,0.36]	chr6	298836	7	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.70894	4.823355	4.93777	0.0798152	0.0144674	0.176933	0.0833845
chr8	38765499	38765599	3802210	0	+	0.36	(0.33,0.36]	chr8	365828	77	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.70894	4.823355	4.93777	0.0798152	0.0144674	0.176933	0.0833845
chr1	52914930	52915030	485581	0	-	0.48	(0.45,0.485]	chr1	57727	4	SS5_PROX	SS5_PROX:INTRON	ECHDC2	ENSG00000121310.17	ENST00000536120.5:ENST00000371522.9:ENST00000460612.5:ENST00000371520.5:ENST00000358358.9:ENST00000476477.6:ENST00000467988.2:ENST00000488268.5:ENST00000544365.5:ENST00000495920.5:ENST00000544531.5:ENST00000480312.6:ENST00000542552.1:ENST00000474789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	170	2	3.42861	4.823354999999999	6.2181	0.0128788	5.99406e-4	0.0773302	0.00993857
chr10	79116216	79116316	4532517	0	+	0.6	(0.58,1]	chr10	432420	466	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.29454	4.82334	5.35214	0.0305531	0.0181452	0.126768	0.0921579
chr16	81687092	81687192	6510182	0	+	0.62	(0.58,1]	chr16	645979	81	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.29454	4.82334	5.35214	0.0305531	0.0181452	0.126768	0.0921579
chr16	85383638	85383738	6516907	0	+	0.6	(0.58,1]	chr16	646391	243	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.29454	4.82334	5.35214	0.0305531	0.0181452	0.126768	0.0921579
chr5	1057296	1057383	2608396	0	-	0.643678	(0.58,1]	chr5	259546	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10:ENST00000634447.1:ENST00000514994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.29454	4.82334	5.35214	0.0305531	0.0181452	0.126768	0.0921579
chr9	134347119	134347219	4260894	0	+	0.66	(0.58,1]	chr9	406311	201	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.29454	4.82334	5.35214	0.0305531	0.0181452	0.126768	0.0921579
chr15	64343483	64343582	6300643	0	-	0.353535	(0.33,0.36]	chr15	620884	4	INTRON	INTRON	CSNK1G1:ENSG00000259316	ENSG00000169118.18:ENSG00000259316.12	ENST00000303052.13:ENST00000607537.6:ENST00000634654.1:ENST00000634811.1:ENST00000606793.3:ENST00000634251.1:ENST00000634847.3:ENST00000635529.1:ENST00000634318.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2:ENST00000635413.1:ENST00000634538.1:ENST00000635320.1:ENST00000558783.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.77355	4.823225	4.8729	0.0735809	0.0164782	0.17026	0.091341
chr20	45026129	45026229	7485762	0	+	0.36	(0.33,0.36]	chr20	780008	6	INTRON	INTRON	STK4	ENSG00000101109.12	ENST00000499879.6:ENST00000372806.8:ENST00000372801.5	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.77355	4.823225	4.8729	0.0735809	0.0164782	0.17026	0.091341
chr8	31107927	31108027	3791225	0	+	0.34	(0.33,0.36]	chr8	365162	66	INTRON	INTRON	WRN	ENSG00000165392.11	ENST00000650667.1:ENST00000298139.7:ENST00000521620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.77355	4.823225	4.8729	0.0735809	0.0164782	0.17026	0.091341
chr10	79115317	79115417	4532508	0	+	0.54	(0.523,0.58]	chr10	432420	457	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	101	2	3.229	4.8231649999999995	6.41733	0.0152072	0.00490887	0.0861813	0.0457614
chr1	228151992	228152091	358106	0	+	0.636364	(0.58,1]	chr1	40434	16	INTRON	INTRON	GJC2	ENSG00000198835.4	ENST00000366714.3	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.81862	4.823075	4.82753	0.0427798	0.0102696	0.13762	0.0678072
chr12	132542026	132542126	5353036	0	+	0.65	(0.58,1]	chr12	523670	137	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.81862	4.823075	4.82753	0.0427798	0.0102696	0.13762	0.0678072
chr17	17721828	17721927	6689253	0	+	0.606061	(0.58,1]	chr17	671338	369	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.81862	4.823075	4.82753	0.0427798	0.0102696	0.13762	0.0678072
chr17	17738352	17738452	6689419	0	+	0.72	(0.58,1]	chr17	671344	138	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.81862	4.823075	4.82753	0.0427798	0.0102696	0.13762	0.0678072
chr7	651736	651836	3524608	0	-	0.59	(0.58,1]	chr7	340404	439	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000430040.5:ENST00000414568.5:ENST00000417852.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.81862	4.823075	4.82753	0.0427798	0.0102696	0.13762	0.0678072
chr7	77321603	77321703	3610683	0	-	0.6	(0.58,1]	chr7	348789	2	SS3_PROX	SS3_PROX:INTRON	GSAP	ENSG00000186088.16	ENST00000257626.12:ENST00000449779.5:ENST00000491796.5:ENST00000441833.6:ENST00000440473.5:ENST00000415112.2:ENST00000426477.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	41	2	4.81862	4.823075	4.82753	0.0427798	0.0102696	0.13762	0.0678072
chr9	134364684	134364784	4261070	0	+	0.66	(0.58,1]	chr9	406311	377	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.81862	4.823075	4.82753	0.0427798	0.0102696	0.13762	0.0678072
chr15	62741966	62742066	6126284	0	+	0.5	(0.485,0.523]	chr15	602552	8	INTRON	INTRON	TLN2	ENSG00000171914.17	ENST00000636159.2:ENST00000561311.5:ENST00000494733.5:ENST00000489129.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.33772	4.8230450000000005	5.30837	0.03818	0.0314138	0.140822	0.12069
chr16	85460506	85460606	6517676	0	+	0.49	(0.485,0.523]	chr16	646391	1012	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.33772	4.8230450000000005	5.30837	0.03818	0.0314138	0.140822	0.12069
chr2	73089815	73089914	1189729	0	-	0.515152	(0.485,0.523]	chr2	128944	1	INTRON	INTRON	RAB11FIP5	ENSG00000135631.17	ENST00000258098.6:ENST00000486777.7:ENST00000475951.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.33772	4.8230450000000005	5.30837	0.03818	0.0314138	0.140822	0.12069
chr15	82382451	82382551	6165735	0	+	0.46	(0.45,0.485]	chr15	606819	267	INTRON	INTRON	UBE2Q2P2	ENSG00000259429.5	ENST00000618775.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	126	2	3.92656	4.82292	5.71928	0.0114063	0.00219685	0.0723462	0.0245167
chr10	119894544	119894644	4597223	0	+	0.36	(0.33,0.36]	chr10	439450	12	INTRON	INTRON	SEC23IP	ENSG00000107651.14	ENST00000369075.8:ENST00000470478.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	99	2	4.06936	4.82285	5.57634	0.0237329	0.00231927	0.10525	0.0255753
chr16	4359777	4359863	6542317	0	-	0.55814	(0.523,0.58]	chr16	650666	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CORO7	ENSG00000262246.6	ENST00000251166.9:ENST00000571227.5:ENST00000537233.6:ENST00000574025.5:ENST00000575531.5:ENST00000575714.5:ENST00000572666.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.5249	4.822699999999999	5.1205	0.0416463	0.0266135	0.136301	0.118113
chr20	32475242	32475340	7543620	0	-	0.561224	(0.523,0.58]	chr20	787372	1	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.5249	4.822699999999999	5.1205	0.0416463	0.0266135	0.136301	0.118113
chr22	50729079	50729177	7755482	0	+	0.561224	(0.523,0.58]	chr22	812807	46	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.5249	4.822699999999999	5.1205	0.0416463	0.0266135	0.136301	0.118113
chr9	34202154	34202254	4140957	0	+	0.54	(0.523,0.58]	chr9	393819	104	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.5249	4.822699999999999	5.1205	0.0416463	0.0266135	0.136301	0.118113
chr9	134340831	134340931	4260831	0	+	0.57	(0.523,0.58]	chr9	406311	138	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.5249	4.822699999999999	5.1205	0.0416463	0.0266135	0.136301	0.118113
chr10	18552171	18552271	4642250	0	-	0.37	(0.36,0.39]	chr10	443320	2	SS3_PROX	SS3_PROX:INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.64834	4.82253	4.99672	0.0604395	0.0272056	0.158506	0.119337
chr12	64630902	64631002	5250569	0	+	0.39	(0.36,0.39]	chr12	511993	79	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.64834	4.82253	4.99672	0.0604395	0.0272056	0.158506	0.119337
chr2	202655585	202655685	996351	0	+	0.39	(0.36,0.39]	chr2	109362	194	INTRON	INTRON	FAM117B	ENSG00000138439.12	ENST00000392238.3:ENST00000481658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.64834	4.82253	4.99672	0.0604395	0.0272056	0.158506	0.119337
chr7	74495109	74495208	3391778	0	+	0.646465	(0.58,1]	chr7	327343	406	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	1	103	2	3.46232	4.82241	6.1825	0.0178328	2.66047e-4	0.0915706	0.00556524
chr16	81550480	81550580	6508798	0	+	0.54	(0.523,0.58]	chr16	645911	546	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	97	2	3.4003	4.82236	6.24442	0.0103016	0.00670944	0.0678983	0.0541591
chr1	6033096	6033195	6767	0	+	0.454545	(0.45,0.485]	chr1	1420	53	INTRON	INTRON	KCNAB2	ENSG00000069424.16	ENST00000655548.1:ENST00000378111.6:ENST00000378097.6:ENST00000666163.1:ENST00000671676.1:ENST00000658883.1:ENST00000658691.1:ENST00000435937.6:ENST00000445501.6:ENST00000478098.5:ENST00000653262.1:ENST00000668706.1:ENST00000389632.9:ENST00000654144.1:ENST00000341524.6:ENST00000462676.3:ENST00000428161.6:ENST00000352527.6:ENST00000663169.1:ENST00000653635.1:ENST00000661248.1:ENST00000656198.1:ENST00000602612.5:ENST00000481789.2:ENST00000656746.1:ENST00000665338.1:ENST00000666299.1:ENST00000652845.1:ENST00000655703.1:ENST00000669250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.5725	4.82235	5.0722	0.0926859	0.00988295	0.188571	0.0664239
chr16	87124943	87125042	6652485	0	-	0.474747	(0.45,0.485]	chr16	665579	407	INTRON	INTRON	C16orf95	ENSG00000260456.7	ENST00000562840.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	43	2	4.5725	4.82235	5.0722	0.0926859	0.00988295	0.188571	0.0664239
chr8	60807916	60808016	3822229	0	+	0.47	(0.45,0.485]	chr8	367932	3	SS3_PROX	SS3_PROX:INTRON	CHD7	ENSG00000171316.13	ENST00000423902.7:ENST00000695853.1:ENST00000695849.1:ENST00000695848.1:ENST00000524602.5:ENST00000525508.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.5725	4.82235	5.0722	0.0926859	0.00988295	0.188571	0.0664239
chr9	93624469	93624569	4184134	0	+	0.46	(0.45,0.485]	chr9	397705	472	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.5725	4.82235	5.0722	0.0926859	0.00988295	0.188571	0.0664239
chr6	170400362	170400462	3076583	0	+	0.47	(0.45,0.485]	chr6	299192	44	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	2	128	2	3.34111	4.822245	6.30338	0.00692617	0.00449358	0.0553898	0.0399491
chr7	47363383	47363483	3587425	0	-	0.42	(0.419,0.45]	chr7	346030	167	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	135	2	3.45261	4.822125	6.19164	0.0118587	0.00409282	0.0740271	0.0374453
chr19	34392673	34392768	7243277	0	+	0.568421	(0.523,0.58]	chr19	741719	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000589985.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	139	2	4.28968	4.8221	5.35452	0.00541927	0.00453096	0.048574	0.0400651
chr3	32889859	32889959	1439592	0	+	0.4	(0.39,0.419]	chr3	153414	1	SS3_PROX	SS3_PROX:INTRON	TRIM71	ENSG00000206557.6	ENST00000383763.6	protein_coding	protein_coding	protein_coding	protein_coding	1	120	2	3.20824	4.822065	6.43589	0.0406523	4.66094e-4	0.135868	0.00828434
chr11	129058184	129058284	5142614	0	-	0.31	(0.29,0.33]	chr11	499842	168	INTRON	INTRON	ARHGAP32	ENSG00000134909.19	ENST00000682385.1:ENST00000310343.13:ENST00000524655.5:ENST00000533509.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.51618	4.82194	5.1277	0.0382902	0.0285091	0.131324	0.123012
chr5	104274277	104274377	2497532	0	+	0.3	(0.29,0.33]	chr5	248658	1690	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	0	44	2	4.51618	4.82194	5.1277	0.0382902	0.0285091	0.131324	0.123012
chr8	128039563	128039646	3920276	0	+	0.518072	(0.485,0.523]	chr8	374317	2	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1	lncRNA	lncRNA	lncRNA	lncRNA	1	96	2	4.13042	4.82166	5.5129	0.0229047	0.00166514	0.102982	0.0203119
chr7	127975473	127975573	3471482	0	+	0.49	(0.485,0.523]	chr7	335423	259	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	95	2	4.05608	4.821655	5.58723	0.0203514	0.00203265	0.0979211	0.0232814
chr12	2961152	2961252	5157695	0	+	0.46	(0.45,0.485]	chr12	501258	4	INTRON	INTRON	TEAD4	ENSG00000197905.10	ENST00000358409.7:ENST00000359864.8:ENST00000540314.2:ENST00000536826.2:ENST00000543035.6:ENST00000397122.6:ENST00000443986.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.74641	4.82163	4.89685	0.0614781	0.0193126	0.158506	0.0994526
chr17	61285140	61285240	6777077	0	+	0.47	(0.45,0.485]	chr17	683282	394	INTRON	INTRON	BCAS3	ENSG00000141376.23	ENST00000407086.8:ENST00000589222.5:ENST00000390652.9:ENST00000588462.5:ENST00000408905.7:ENST00000588874.5:ENST00000585744.5:ENST00000585979.5:ENST00000587002.1:ENST00000585812.5:ENST00000587294.5:ENST00000592702.5:ENST00000588569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.74641	4.82163	4.89685	0.0614781	0.0193126	0.158506	0.0994526
chr12	31285351	31285450	5405647	0	-	0.40404	(0.39,0.419]	chr12	529415	21	INTRON	INTRON	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000448582.6:ENST00000454658.6:ENST00000544921.5:ENST00000542983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.64779	4.821585	4.99538	0.0613573	0.0273358	0.158506	0.119337
chr17	44040955	44041055	6910326	0	-	0.4	(0.39,0.419]	chr17	703395	3	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.64779	4.821585	4.99538	0.0613573	0.0273358	0.158506	0.119337
chr19	947306	947406	7185319	0	+	0.6	(0.58,1]	chr19	730741	142	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	105	2	3.70825	4.821495	5.93474	0.0111705	5.58693e-4	0.0716525	0.00944382
chr1	52915198	52915266	485584	0	-	0.514706	(0.485,0.523]	chr1	57729	2	UTR3	UTR3:EXON_MRNA:INTRON	ECHDC2	ENSG00000121310.17	ENST00000536120.5:ENST00000371522.9:ENST00000460612.5:ENST00000371520.5:ENST00000358358.9:ENST00000476477.6:ENST00000467988.2:ENST00000488268.5:ENST00000544365.5:ENST00000495920.5:ENST00000544531.5:ENST00000480312.6:ENST00000542552.1:ENST00000474789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.52142	4.82117	5.12092	0.0414411	0.0273555	0.136301	0.119337
chr6	2268509	2268607	2824609	0	+	0.622449	(0.58,1]	chr6	277256	23	INTRON	INTRON	GMDS-DT	ENSG00000250903.10	ENST00000657072.1:ENST00000529893.6:ENST00000659523.1:ENST00000659643.1:ENST00000660978.1:ENST00000691004.1:ENST00000664738.1:ENST00000532124.6:ENST00000691547.1:ENST00000663428.1:ENST00000654526.1:ENST00000670895.1:ENST00000532564.8:ENST00000685772.1:ENST00000687264.1:ENST00000660533.1:ENST00000531092.6:ENST00000524770.6:ENST00000657589.1:ENST00000607519.2:ENST00000456943.6:ENST00000525811.5:ENST00000534441.5:ENST00000533653.5:ENST00000534468.1:ENST00000530346.6:ENST00000662000.1:ENST00000665610.1:ENST00000654970.1	lncRNA	lncRNA	lncRNA	lncRNA	2	140	2	3.04215	4.82092	6.59969	0.0177015	7.15008e-5	0.0910644	0.00213784
chr19	7640597	7640697	7199322	0	+	0.58	(0.523,0.58]	chr19	733973	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	STXBP2	ENSG00000076944.17	ENST00000593535.5:ENST00000595950.5:ENST00000221283.10:ENST00000441779.6:ENST00000597068.5:ENST00000414284.6:ENST00000599737.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	246	2	4.47281	4.820845	5.16888	0.00382597	7.81032e-5	0.0399078	0.00227541
chr16	10579648	10579748	6547750	0	-	0.47	(0.45,0.485]	chr16	651717	206	INTRON	INTRON	EMP2	ENSG00000213853.10	ENST00000359543.8:ENST00000342147.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	124	2	2.69444	4.820615	6.94679	0.0471378	0.00214762	0.156915	0.0291055
chr7	72717679	72717778	3599750	0	-	0.343434	(0.33,0.36]	chr7	347162	35	INTRON	INTRON	TYW1B	ENSG00000277149.5	ENST00000612372.4:ENST00000620995.5	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.64131	4.82058	4.99985	0.0867669	0.0127452	0.182221	0.0773423
chr1	40626318	40626417	452320	0	-	0.585859	(0.58,1]	chr1	54512	58	UTR3	UTR3:EXON_MRNA	RIMS3	ENSG00000117016.10	ENST00000372684.8:ENST00000372683.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.58025	4.820475	5.0607	0.029633	0.0172566	0.116079	0.0923809
chr3	13025994	13026094	1689396	0	-	0.71	(0.58,1]	chr3	176542	35	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.58025	4.820475	5.0607	0.029633	0.0172566	0.116079	0.0923809
chr4	8218144	8218244	2014206	0	+	0.61	(0.58,1]	chr4	205553	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SH3TC1	ENSG00000125089.18	ENST00000508641.2:ENST00000245105.8:ENST00000506360.5:ENST00000502669.5:ENST00000515682.5:ENST00000457650.7:ENST00000684698.1:ENST00000684537.1:ENST00000682056.1:ENST00000682862.1:ENST00000507891.2:ENST00000512100.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.58025	4.820475	5.0607	0.029633	0.0172566	0.116079	0.0923809
chr7	143387787	143387887	3510784	0	+	0.64	(0.58,1]	chr7	338490	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.58025	4.820475	5.0607	0.029633	0.0172566	0.116079	0.0923809
chr9	133690727	133690827	4427470	0	-	0.59	(0.58,1]	chr9	423044	2	SS3_PROX	SS3_PROX:INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000371868.5	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.58025	4.820475	5.0607	0.029633	0.0172566	0.116079	0.0923809
chr10	87754289	87754388	4725117	0	-	0.434343	(0.419,0.45]	chr10	450968	29	UTR3	UTR3:EXON_MRNA	ATAD1	ENSG00000138138.14	ENST00000680024.1:ENST00000308448.11:ENST00000681308.1:ENST00000328142.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	101	2	3.97869	4.820405	5.66212	0.0266819	0.00330911	0.111563	0.0324356
chr16	81614515	81614615	6509441	0	+	0.51	(0.485,0.523]	chr16	645921	36	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	247	2	4.53126	4.820325	5.10939	0.00340083	9.76199e-5	0.0373142	0.00268525
chr16	85402330	85402430	6517094	0	+	0.61	(0.58,1]	chr16	646391	430	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	122	2	2.97017	4.820315	6.67046	0.00858469	0.00135763	0.0612699	0.0224546
chr11	118623790	118623888	4948431	0	+	0.520408	(0.485,0.523]	chr11	477774	19	INTRON	INTRON	PHLDB1	ENSG00000019144.20	ENST00000361417.6:ENST00000530994.5:ENST00000600882.6:ENST00000528594.5:ENST00000621027.4:ENST00000356063.9:ENST00000532639.3:ENST00000527259.5:ENST00000526374.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	49	2	4.12717	4.820035	5.5129	0.0545434	0.0229047	0.167824	0.102982
chr11	121478343	121478443	4953916	0	+	0.51	(0.485,0.523]	chr11	478663	1	SS5_PROX	SS5_PROX:INTRON	SORL1	ENSG00000137642.13	ENST00000260197.12:ENST00000532451.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.12717	4.820035	5.5129	0.0545434	0.0229047	0.167824	0.102982
chr1	43654595	43654694	107772	0	+	0.383838	(0.36,0.39]	chr1	13366	4	INTRON	INTRON	KDM4A	ENSG00000066135.13	ENST00000372396.4:ENST00000463151.5:ENST00000485249.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.39677	4.81997	5.24317	0.0433841	0.0422707	0.149195	0.138813
chr2	186638565	186638665	972831	0	+	0.37	(0.36,0.39]	chr2	106896	1	SS5_PROX	SS5_PROX:INTRON	ITGAV	ENSG00000138448.12	ENST00000261023.8:ENST00000374907.7:ENST00000433736.6	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.39677	4.81997	5.24317	0.0433841	0.0422707	0.149195	0.138813
chr15	85384967	85385067	6176247	0	+	0.41	(0.39,0.419]	chr15	607519	29	INTRON	INTRON	AKAP13	ENSG00000170776.22	ENST00000559362.5:ENST00000394518.7:ENST00000560302.5:ENST00000361243.6:ENST00000560256.1	protein_coding	protein_coding	protein_coding	protein_coding	1	121	2	3.07541	4.81958	6.56375	0.0494381	3.30465e-4	0.146515	0.00649658
chr18	10998352	10998452	7118420	0	-	0.35	(0.33,0.36]	chr18	724484	183	INTRON	INTRON	PIEZO2	ENSG00000154864.14	ENST00000302079.10:ENST00000674853.1:ENST00000383408.7:ENST00000503781.7:ENST00000580640.5:ENST00000582913.5:ENST00000686869.1:ENST00000688929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.57958	4.81939	5.0592	0.0504445	0.0288057	0.148216	0.123764
chr3	9413706	9413805	1402241	0	+	0.343434	(0.33,0.36]	chr3	150072	154	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.57958	4.81939	5.0592	0.0504445	0.0288057	0.148216	0.123764
chr10	31928582	31928682	4661833	0	-	0.78	(0.58,1]	chr10	444987	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9	protein_coding	protein_coding	protein_coding	protein_coding	2	116	2	3.62605	4.818695	6.01134	0.00531709	0.00138924	0.047841	0.0179324
chr2	240623397	240623496	1075177	0	+	0.606061	(0.58,1]	chr2	116654	40	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	1	93	2	3.30273	4.81855	6.33437	0.0107069	0.00276493	0.0700635	0.0332418
chr7	66087247	66087333	3379050	0	+	0.593023	(0.58,1]	chr7	326137	6	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASL	ENSG00000126522.17	ENST00000672586.1:ENST00000304874.14:ENST00000673518.1:ENST00000672498.1:ENST00000673350.1:ENST00000380839.9:ENST00000395332.8:ENST00000672676.1:ENST00000362000.10:ENST00000395331.4:ENST00000671817.1:ENST00000673594.1:ENST00000673149.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	301	2	4.39728	4.81839	5.2395	0.00100721	3.37223e-5	0.0191125	0.0012296
chr2	147881521	147881621	912846	0	+	0.35	(0.33,0.36]	chr2	102444	41	INTRON	INTRON	ACVR2A	ENSG00000121989.15	ENST00000535787.5:ENST00000487959.5:ENST00000462659.1:ENST00000404590.1:ENST00000241416.12:ENST00000465329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	164	2	2.62342	4.81824	7.01306	0.0160626	0.00198573	0.0896852	0.0279914
chr7	137999258	137999358	3720695	0	-	0.35	(0.33,0.36]	chr7	357307	655	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5	protein_coding	protein_coding	protein_coding	protein_coding	3	356	2	4.19029	4.818225	5.44616	0.00323479	4.81066e-5	0.0363264	0.00160081
chr19	35003624	35003724	7244896	0	+	0.57	(0.523,0.58]	chr19	742073	4	INTRON	INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	123	2	3.93759	4.817965	5.69834	0.0103671	0.00194036	0.0686683	0.0225083
chr1	61148126	61148226	146763	0	+	0.43	(0.419,0.45]	chr1	17147	152	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	162	2	2.92164	4.81795	6.71426	0.00876484	0.0050028	0.0614673	0.0463896
chr6	47268878	47268978	3144095	0	-	0.34	(0.33,0.36]	chr6	306750	150	INTRON	INTRON	TNFRSF21	ENSG00000146072.6	ENST00000296861.2	protein_coding	protein_coding	protein_coding	protein_coding	1	120	2	4.7408	4.817740000000001	4.89468	0.0629186	3.78399e-4	0.160778	0.00719141
chr8	30544967	30545065	3789780	0	+	0.530612	(0.523,0.58]	chr8	364946	3	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBPMS	ENSG00000157110.16	ENST00000320203.8:ENST00000339877.8:ENST00000287771.9:ENST00000397323.9:ENST00000517860.5:ENST00000520161.5:ENST00000519647.5:ENST00000520191.5:ENST00000519359.5:ENST00000522694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	181	2	3.7242	4.817735	5.91127	0.00691375	0.00111349	0.0553898	0.0152496
chr10	133350386	133350486	4783438	0	-	0.65	(0.58,1]	chr10	457517	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000226699	ENSG00000226699.1	ENST00000452591.1	lncRNA	lncRNA	lncRNA	lncRNA	1	99	2	3.09402	4.81771	6.5414	0.0174733	0.00179018	0.0928044	0.0262802
chr20	49148988	49149087	7572606	0	-	0.555556	(0.523,0.58]	chr20	791289	127	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	1	113	2	3.40026	4.81763	6.235	0.0262178	4.59688e-4	0.110264	0.00821903
chr17	78737865	78737965	6978874	0	-	0.28	[0,0.29]	chr17	712629	10	INTRON	INTRON	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000591574.5:ENST00000592497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	91	2	3.60297	4.81759	6.03221	0.00592276	0.00561175	0.0493906	0.047889
chr22	46208879	46208978	7742658	0	+	0.373737	(0.36,0.39]	chr22	811777	99	INTRON	INTRON	PPARA	ENSG00000186951.17	ENST00000407236.6:ENST00000420804.5:ENST00000402126.1:ENST00000493286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.48559	4.817585	5.14958	0.0493212	0.036329	0.146207	0.139793
chr5	172866893	172866993	2590744	0	+	0.39	(0.36,0.39]	chr5	257056	102	INTRON	INTRON	ERGIC1	ENSG00000113719.17	ENST00000393784.8:ENST00000690799.1:ENST00000686615.1:ENST00000684928.1:ENST00000519860.3:ENST00000691612.1:ENST00000687901.1:ENST00000689975.1:ENST00000326654.7:ENST00000693299.1:ENST00000687702.1:ENST00000685391.1:ENST00000520326.6:ENST00000520642.5:ENST00000686955.1:ENST00000689977.1:ENST00000523291.5:ENST00000692557.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.48559	4.817585	5.14958	0.0493212	0.036329	0.146207	0.139793
chrX	69676464	69676564	7896909	0	+	0.46	(0.45,0.485]	chrX	827356	58	INTRON	INTRON	EDA	ENSG00000158813.18	ENST00000374553.6:ENST00000374548.5:ENST00000502251.5:ENST00000533317.5:ENST00000525810.5:ENST00000527388.5:ENST00000374552.9:ENST00000524573.5:ENST00000503592.5:ENST00000510681.2:ENST00000530321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	108	2	4.52271	4.817505000000001	5.1123	0.0458344	6.22398e-4	0.142336	0.0101764
chrX	78122534	78122634	7912478	0	+	0.31	(0.29,0.33]	chrX	828894	3	SS3_PROX	SS3_PROX:INTRON	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000491291.1:ENST00000373316.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	261	2	3.90757	4.817355	5.72714	0.00295606	0.00198096	0.0345926	0.0229039
chr2	239284075	239284175	1391549	0	-	0.62	(0.58,1]	chr2	148740	325	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	41	2	4.54927	4.817305	5.08534	0.0643046	0.00549379	0.161669	0.0454065
chr21	43957038	43957138	7625354	0	+	0.59	(0.58,1]	chr21	796924	14	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000448845.1:ENST00000422850.5:ENST00000546158.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.54927	4.817305	5.08534	0.0643046	0.00549379	0.161669	0.0454065
chr1	44031205	44031305	459368	0	-	0.74	(0.58,1]	chr1	55277	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SLC6A9	ENSG00000196517.13	ENST00000372306.7:ENST00000372310.8:ENST00000475075.6:ENST00000492434.6:ENST00000489764.1:ENST00000466926.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	94	2	4.47001	4.817270000000001	5.16453	0.0249802	4.15967e-4	0.10758	0.00768537
chr12	46757533	46757633	5220770	0	+	0.49	(0.485,0.523]	chr12	506670	1051	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2	lncRNA	lncRNA	lncRNA	lncRNA	1	97	2	3.38908	4.816965	6.24485	0.0107186	0.00665813	0.0700744	0.0540577
chr18	13537711	13537810	7025965	0	+	0.393939	(0.39,0.419]	chr18	717626	112	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000677744.1:ENST00000593236.1:ENST00000678400.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.48504	4.816635	5.14823	0.0501234	0.0364893	0.147892	0.139793
chr13	113046603	113046687	5656100	0	+	0.559524	(0.523,0.58]	chr13	555178	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000480321.1:ENST00000397021.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.23973	4.8165	5.39327	0.0444247	0.0277354	0.153511	0.112851
chr7	94657583	94657681	3418649	0	+	0.55102	(0.523,0.58]	chr7	330326	6	INTRON	INTRON	PEG10	ENSG00000242265.6	ENST00000482108.1:ENST00000493935.1:ENST00000488574.5:ENST00000612748.1:ENST00000613043.1:ENST00000617526.4:ENST00000615790.5:ENST00000612941.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.23973	4.8165	5.39327	0.0444247	0.0277354	0.153511	0.112851
chr1	183472931	183472990	301134	0	+	0.694915	(0.58,1]	chr1	34234	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.74346	4.8164549999999995	4.88945	0.0388928	0.0121457	0.131324	0.0754623
chr6	41586017	41586115	2912911	0	+	0.653061	(0.58,1]	chr6	285786	1	INTRON	INTRON	FOXP4	ENSG00000137166.17	ENST00000307972.10:ENST00000373063.7:ENST00000409208.5:ENST00000373057.7	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.74346	4.8164549999999995	4.88945	0.0388928	0.0121457	0.131324	0.0754623
chr9	133733542	133733642	4427917	0	-	0.62	(0.58,1]	chr9	423128	3	SS5_PROX	SS5_PROX:INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000427237.6:ENST00000371867.5:ENST00000298628.6	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.74346	4.8164549999999995	4.88945	0.0388928	0.0121457	0.131324	0.0754623
chr12	50562809	50562908	5230034	0	+	0.383838	(0.36,0.39]	chr12	507705	572	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	119	2	3.24109	4.816145000000001	6.3912	0.0383717	5.20645e-4	0.131324	0.00899129
chr6	160067948	160068048	3066293	0	+	0.3	(0.29,0.33]	chr6	298069	3	SS3_PROX	SS3_PROX:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	95	2	3.52516	4.81604	6.10692	0.0079683	0.00765507	0.0582978	0.0579377
chr10	79218073	79218173	4533542	0	+	0.52	(0.485,0.523]	chr10	432457	14	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	126	2	3.55748	4.815955000000001	6.07443	0.00899749	0.00236572	0.0637469	0.0259199
chr17	315536	315635	6821431	0	-	0.575758	(0.523,0.58]	chr17	689582	90	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	195	2	3.04726	4.815865	6.58447	0.0165446	1.68436e-4	0.0882444	0.00400681
chr7	131026656	131026756	3712019	0	-	0.38	(0.36,0.39]	chr7	356767	165	INTRON	INTRON	LINC-PINT	ENSG00000231721.7	ENST00000647388.1:ENST00000423414.5:ENST00000433079.5:ENST00000642156.1:ENST00000646429.1:ENST00000451786.5:ENST00000646587.1:ENST00000645248.1:ENST00000642602.1:ENST00000644804.1:ENST00000647288.1:ENST00000643373.1:ENST00000643135.1:ENST00000643855.1:ENST00000643874.1:ENST00000644188.1:ENST00000435523.5:ENST00000431189.1:ENST00000642483.1	lncRNA	lncRNA	lncRNA	lncRNA	1	101	2	3.38495	4.81586	6.24677	0.0125396	0.00931845	0.0765784	0.0649153
chr16	89432624	89432724	6661160	0	-	0.38	(0.36,0.39]	chr16	666753	9	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	360	2	4.7344	4.815675000000001	4.89695	0.0030522	7.15826e-5	0.035191	0.00213915
chr14	89468484	89468584	6028795	0	-	0.4	(0.39,0.419]	chr14	591484	514	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000555353.5:ENST00000555855.5:ENST00000555034.5:ENST00000553904.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.30157	4.81564	5.32971	0.0496288	0.0390381	0.160725	0.131575
chr3	65993442	65993542	1815414	0	-	0.39	(0.36,0.39]	chr3	187314	390	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	99	2	3.52669	4.815535	6.10438	0.0117824	0.00914333	0.073726	0.063297
chr5	1103803	1103903	2608889	0	-	0.64	(0.58,1]	chr5	259667	92	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	1	104	2	3.66231	4.815225	5.96814	0.0122106	5.06433e-4	0.0752279	0.00881473
chr1	1272552	1272652	380718	0	-	0.62	(0.58,1]	chr1	42929	3	SS5_PROX	SS5_PROX:INTRON	UBE2J2	ENSG00000160087.21	ENST00000450390.6:ENST00000349431.11:ENST00000347370.6:ENST00000400929.6:ENST00000464036.5:ENST00000360466.6:ENST00000400930.8:ENST00000473215.5:ENST00000435198.5:ENST00000509720.5:ENST00000491779.5:ENST00000466752.5:ENST00000503294.5:ENST00000477894.5:ENST00000422076.5:ENST00000502382.1:ENST00000461142.3:ENST00000488418.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	115	2	3.38782	4.815135	6.24245	0.00334087	0.00277379	0.0368376	0.0287134
chr17	19665646	19665746	6696195	0	+	0.47	(0.45,0.485]	chr17	672344	2	INTRON	INTRON	ALDH3A2	ENSG00000072210.19	ENST00000581518.6:ENST00000673136.1:ENST00000672465.1:ENST00000631291.2:ENST00000672357.1:ENST00000579855.5:ENST00000176643.11:ENST00000339618.8:ENST00000672564.1:ENST00000671878.1:ENST00000582991.6:ENST00000395575.7:ENST00000672487.1:ENST00000630662.2:ENST00000472059.6:ENST00000672567.1:ENST00000672709.1:ENST00000672059.1:ENST00000673472.1:ENST00000672608.1:ENST00000476965.5:ENST00000574078.3:ENST00000673064.1:ENST00000673516.1:ENST00000672591.1:ENST00000571163.2:ENST00000573947.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	95	2	3.88066	4.814895	5.74913	0.017574	0.00346544	0.0906595	0.0335664
chr3	119930115	119930214	1885458	0	-	0.292929	(0.29,0.33]	chr3	191353	58	INTRON	INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000677502.1:ENST00000676566.1:ENST00000650344.2:ENST00000678181.1:ENST00000678561.1:ENST00000678787.1:ENST00000679066.1:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000677885.1:ENST00000678350.1:ENST00000676775.1:ENST00000677878.1:ENST00000677875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	99	2	3.28897	4.814875	6.34078	0.0137233	0.00499711	0.0814223	0.0463896
chr2	55007787	55007886	1148102	0	-	0.343434	(0.33,0.36]	chr2	125459	197	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.57035	4.81486	5.05937	0.0945416	0.0112642	0.188571	0.071709
chr2	135099480	135099580	899711	0	+	0.36	(0.33,0.36]	chr2	101404	54	INTRON	INTRON	RAB3GAP1	ENSG00000115839.19	ENST00000539493.3:ENST00000688088.1:ENST00000693554.1:ENST00000690785.1:ENST00000689880.1:ENST00000264158.13:ENST00000690208.1:ENST00000691478.1:ENST00000686114.1:ENST00000685967.1:ENST00000442034.5:ENST00000687199.1:ENST00000691339.1:ENST00000688182.1:ENST00000487003.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.57035	4.81486	5.05937	0.0945416	0.0112642	0.188571	0.071709
chr13	40628546	40628646	5692951	0	-	0.44	(0.419,0.45]	chr13	558751	654	INTRON	INTRON	FOXO1	ENSG00000150907.10	ENST00000379561.6:ENST00000655267.1:ENST00000660760.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	101	2	3.46155	4.814835	6.16812	0.0123115	0.0110249	0.0756356	0.0711736
chrX	47220682	47220780	7877810	0	+	0.5	(0.485,0.523]	chrX	825683	12	INTRON	INTRON	CDK16	ENSG00000102225.17	ENST00000517997.5:ENST00000517479.1:ENST00000457458.6:ENST00000522883.1:ENST00000520295.5:ENST00000357227.9:ENST00000519758.5:ENST00000520893.5:ENST00000517426.5:ENST00000522234.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	154	2	2.89164	4.8146	6.73756	0.0304031	1.13097e-4	0.11845	0.0030016
chr1	43561914	43562014	107058	0	+	0.58	(0.523,0.58]	chr1	13192	76	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	113	2	3.4477	4.814495	6.18129	0.0242383	5.34061e-4	0.106588	0.0091384
chr20	41316761	41316861	7562596	0	-	0.47	(0.45,0.485]	chr20	789869	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZHX3	ENSG00000174306.22	ENST00000683867.1:ENST00000559234.5:ENST00000558993.1:ENST00000559296.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.41963	4.814344999999999	5.20906	0.0399616	0.0355247	0.137983	0.133954
chr20	44359843	44359942	7482506	0	+	0.464646	(0.45,0.485]	chr20	779618	36	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.41963	4.814344999999999	5.20906	0.0399616	0.0355247	0.137983	0.133954
chr1	119088431	119088531	570354	0	-	0.34	(0.33,0.36]	chr1	65519	60	INTRON	INTRON	WARS2	ENSG00000116874.12	ENST00000235521.5:ENST00000369426.9:ENST00000495746.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.73368	4.81418	4.89468	0.0629186	0.0216127	0.160778	0.105648
chr20	3350022	3350122	7516288	0	-	0.46	(0.45,0.485]	chr20	784726	10	INTRON	INTRON	DNAAF9	ENSG00000088854.13	ENST00000252032.10	protein_coding	protein_coding	protein_coding	protein_coding	1	99	2	3.34686	4.81408	6.2813	0.0124121	0.00719875	0.0765738	0.056408
chr14	64994656	64994756	5845696	0	+	0.48	(0.45,0.485]	chr14	572172	67	INTRON	INTRON	FNTB	ENSG00000257365.8	ENST00000246166.3:ENST00000555372.5:ENST00000555742.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	96	2	4.01376	4.8140350000000005	5.61431	0.0217589	0.0024644	0.100615	0.0265925
chr1	174274521	174274617	279138	0	+	0.354167	(0.33,0.36]	chr1	32678	17	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding	1	123	2	3.81375	4.81383	5.81391	0.0141497	0.00200357	0.0814658	0.0230381
chr17	2377497	2377568	6666389	0	+	0.450704	(0.45,0.485]	chr17	667870	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SGSM2	ENSG00000141258.13	ENST00000268989.8:ENST00000426855.6:ENST00000574563.5:ENST00000572841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.49786	4.81362	5.12938	0.101311	0.00873194	0.196131	0.0612699
chrX	23740456	23740555	7995859	0	-	0.484848	(0.45,0.485]	chrX	836471	41	INTRON	INTRON	ACOT9	ENSG00000123130.17	ENST00000379303.10:ENST00000336430.11:ENST00000379295.5:ENST00000494361.5:ENST00000492081.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.49786	4.81362	5.12938	0.101311	0.00873194	0.196131	0.0612699
chr16	29274312	29274412	6433580	0	+	0.43	(0.419,0.45]	chr16	636745	222	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	44	2	4.63955	4.81361	4.98767	0.0669167	0.0293406	0.16272	0.125102
chr22	50348345	50348445	7753714	0	+	0.45	(0.419,0.45]	chr22	812476	44	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.63955	4.81361	4.98767	0.0669167	0.0293406	0.16272	0.125102
chr6	167042718	167042818	3071847	0	+	0.43	(0.419,0.45]	chr6	298688	27	UTR3	UTR3:EXON_MRNA:INTRON	CEP43:ENSG00000272980	ENSG00000213066.13:ENSG00000272980.4	ENST00000366847.9:ENST00000609590.1:ENST00000646989.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:processed_transcript	0	44	2	4.63955	4.81361	4.98767	0.0669167	0.0293406	0.16272	0.125102
chr2	96717135	96717235	1221979	0	-	0.39	(0.36,0.39]	chr2	132122	36	INTRON	INTRON	LMAN2L	ENSG00000114988.12	ENST00000264963.9:ENST00000434524.5:ENST00000377079.8:ENST00000446780.5:ENST00000434865.5:ENST00000440610.5:ENST00000449221.5:ENST00000480869.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.69932	4.813335	4.92735	0.0877431	0.0160072	0.183437	0.0894586
chr13	50037859	50037958	5714016	0	-	0.373737	(0.36,0.39]	chr13	560609	58	INTRON	INTRON	DLEU2	ENSG00000231607.14	ENST00000621282.4:ENST00000688690.1:ENST00000668305.1:ENST00000425586.5:ENST00000686946.1	lncRNA	lncRNA	lncRNA	lncRNA	0	43	2	4.7639	4.813195	4.86249	0.0811309	0.0181775	0.177951	0.0955836
chr8	38771691	38771791	3802272	0	+	0.37	(0.36,0.39]	chr8	365828	139	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	98	2	3.85704	4.812985	5.76893	0.0200694	0.00420937	0.0971995	0.0380601
chr6	82052638	82052738	3190484	0	-	0.38	(0.36,0.39]	chr6	309363	832	INTRON	INTRON	LINC02542	ENSG00000226453.3	ENST00000667666.1:ENST00000663543.1:ENST00000668303.1:ENST00000660637.1:ENST00000668266.1:ENST00000666226.1	lncRNA	lncRNA	lncRNA	lncRNA	1	98	2	3.62454	4.812765	6.00099	0.0139273	0.00730728	0.0805916	0.0550647
chr17	948607	948707	6826321	0	-	0.57	(0.523,0.58]	chr17	690074	153	INTRON	INTRON	NXN	ENSG00000167693.17	ENST00000336868.8:ENST00000575171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.60868	4.812725	5.01677	0.0482765	0.0226775	0.144601	0.108193
chr10	119253434	119253534	4593781	0	+	0.47	(0.45,0.485]	chr10	439167	404	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.67139	4.812595	4.9538	0.0569772	0.0223378	0.154343	0.108193
chr20	43550083	43550180	7481043	0	+	0.463918	(0.45,0.485]	chr20	779362	20	UTR3	UTR3:EXON_MRNA	L3MBTL1	ENSG00000185513.17	ENST00000649917.1:ENST00000649698.1:ENST00000422861.3:ENST00000648715.1:ENST00000647827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.67139	4.812595	4.9538	0.0569772	0.0223378	0.154343	0.108193
chr8	66828903	66829003	3838143	0	+	0.47	(0.45,0.485]	chr8	368472	2	SS5_PROX	SS5_PROX:INTRON	SGK3	ENSG00000104205.16	ENST00000521198.7:ENST00000396596.2:ENST00000521960.5:ENST00000522398.5:ENST00000522629.5:ENST00000520976.5:ENST00000345714.8:ENST00000519396.5:ENST00000521152.5	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.67139	4.812595	4.9538	0.0569772	0.0223378	0.154343	0.108193
chr12	19467982	19468081	5183354	0	+	0.393939	(0.39,0.419]	chr12	504355	49	INTRON	INTRON	AEBP2	ENSG00000139154.16	ENST00000538425.5:ENST00000541908.5:ENST00000266508.14:ENST00000398864.7:ENST00000673644.1:ENST00000360995.8:ENST00000673824.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.69798	4.812385	4.92679	0.088901	0.0160946	0.183874	0.0896852
chr17	19546234	19546334	6695633	0	+	0.41	(0.39,0.419]	chr17	672196	4	SS3_PROX	SS3_PROX:INTRON	SLC47A1	ENSG00000142494.13	ENST00000584348.5:ENST00000571335.5:ENST00000436810.6:ENST00000270570.8:ENST00000575023.5:ENST00000576095.5:ENST00000497548.5:ENST00000395585.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	43	2	4.69798	4.812385	4.92679	0.088901	0.0160946	0.183874	0.0896852
chr3	194645579	194645663	1980396	0	-	0.404762	(0.39,0.419]	chr3	201562	5	INTRON	INTRON	LSG1	ENSG00000041802.11	ENST00000265245.10:ENST00000475763.5:ENST00000460584.1:ENST00000437613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.69798	4.812385	4.92679	0.088901	0.0160946	0.183874	0.0896852
chr4	77898248	77898348	2065311	0	+	0.4	(0.39,0.419]	chr4	211097	36	INTRON	INTRON	MRPL1	ENSG00000169288.18	ENST00000315567.13:ENST00000502384.3:ENST00000506674.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.69798	4.812385	4.92679	0.088901	0.0160946	0.183874	0.0896852
chr17	3824186	3824280	6838728	0	-	0.297872	(0.29,0.33]	chr17	691919	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NCBP3	ENSG00000074356.17	ENST00000389005.6:ENST00000574911.5:ENST00000575815.5:ENST00000577169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	245	2	4.32715	4.81236	5.29757	0.00465828	5.81562e-5	0.044542	0.00182973
chr16	67229388	67229470	6607472	0	-	0.414634	(0.39,0.419]	chr16	660982	1	UTR3	UTR3:EXON_MRNA	FHOD1	ENSG00000135723.14	ENST00000569085.1:ENST00000258201.9:ENST00000567752.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.76257	4.812250000000001	4.86193	0.0822354	0.0182739	0.179396	0.0958352
chr22	25086188	25086287	7699895	0	+	0.414141	(0.39,0.419]	chr22	805908	154	INTRON	INTRON	KIAA1671	ENSG00000197077.14	ENST00000358431.8:ENST00000406486.8:ENST00000494730.2:ENST00000401395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.76257	4.812250000000001	4.86193	0.0822354	0.0182739	0.179396	0.0958352
chr5	60390895	60390995	2678064	0	-	0.34	(0.33,0.36]	chr5	264432	183	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000502484.6:ENST00000509355.5:ENST00000506024.5:ENST00000506510.6:ENST00000511382.1:ENST00000505507.6:ENST00000515835.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	100	2	3.34409	4.811585	6.27908	0.0131368	0.00749528	0.0788915	0.0576451
chr21	43920015	43920115	7624980	0	+	0.63	(0.58,1]	chr21	796899	32	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	3.95573	4.811355	5.66698	0.0102927	0.00191878	0.0684871	0.0223755
chr13	113031598	113031696	5655945	0	+	0.642857	(0.58,1]	chr13	555157	47	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486806.1:ENST00000473345.5	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.18518	4.81135	5.43752	0.0374658	0.0156166	0.139793	0.0849828
chr16	85421922	85422022	6517290	0	+	0.6	(0.58,1]	chr16	646391	626	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.18518	4.81135	5.43752	0.0374658	0.0156166	0.139793	0.0849828
chr19	952294	952394	7185369	0	+	0.6	(0.58,1]	chr19	730741	192	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.18518	4.81135	5.43752	0.0374658	0.0156166	0.139793	0.0849828
chr9	134370672	134370772	4261130	0	+	0.7	(0.58,1]	chr9	406311	437	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	46	2	4.18518	4.81135	5.43752	0.0374658	0.0156166	0.139793	0.0849828
chr9	135939472	135939572	4431902	0	-	0.61	(0.58,1]	chr9	423567	4	SS5_PROX	SS5_PROX:INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.18518	4.81135	5.43752	0.0374658	0.0156166	0.139793	0.0849828
chr2	54570881	54570981	799423	0	+	0.37	(0.36,0.39]	chr2	90800	116	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7:ENST00000333896.5	protein_coding	protein_coding	protein_coding	protein_coding	1	99	2	3.98537	4.811285	5.6372	0.024533	0.00307113	0.106796	0.0309223
chr2	138567650	138567748	904556	0	+	0.377551	(0.36,0.39]	chr2	101982	23	INTRON	INTRON	SPOPL	ENSG00000144228.9	ENST00000280098.9:ENST00000420679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	99	2	3.98537	4.811285	5.6372	0.024533	0.00307113	0.106796	0.0309223
chr3	136172217	136172317	1920891	0	-	0.43	(0.419,0.45]	chr3	195416	191	INTRON	INTRON	MSL2	ENSG00000174579.4	ENST00000309993.3:ENST00000434835.2:ENST00000481989.1:ENST00000491050.1:ENST00000473093.1	protein_coding	protein_coding	protein_coding	protein_coding	1	99	2	3.77132	4.81126	5.8512	0.0201381	0.00544312	0.0973365	0.0454065
chr1	32389788	32389888	438268	0	-	0.49	(0.485,0.523]	chr1	52264	25	INTRON	INTRON	BSDC1	ENSG00000160058.19	ENST00000455895.7:ENST00000444377.5:ENST00000341071.11:ENST00000526031.5:ENST00000419121.6:ENST00000446293.6:ENST00000373520.8:ENST00000527513.5:ENST00000527163.5:ENST00000530485.1:ENST00000474414.5:ENST00000530876.5:ENST00000530753.1:ENST00000533084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.60518	4.811185	5.01719	0.0480495	0.0233371	0.144601	0.110098
chrX	135306223	135306323	8116917	0	-	0.49	(0.485,0.523]	chrX	845635	98	INTRON	INTRON	ZNF75D	ENSG00000186376.15	ENST00000494295.1:ENST00000370766.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.60518	4.811185	5.01719	0.0480495	0.0233371	0.144601	0.110098
chr9	124492351	124492440	4402647	0	-	0.606742	(0.58,1]	chr9	419811	8	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	3.75733	4.81112	5.86491	0.00707578	0.0033279	0.0558168	0.0325742
chr14	39065193	39065293	5967462	0	-	0.42	(0.419,0.45]	chr14	584619	2	SS3_PROX	SS3_PROX:INTRON	SEC23A	ENSG00000100934.15	ENST00000307712.11:ENST00000537403.5:ENST00000545328.6:ENST00000553925.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.38804	4.811055	5.23407	0.0486006	0.0451818	0.154539	0.145074
chr1	17669190	17669290	54903	0	+	0.53	(0.523,0.58]	chr1	5603	42	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.71922	4.81072	4.90222	0.0721601	0.0125132	0.168159	0.0765738
chr16	68233681	68233767	6610372	0	-	0.523256	(0.523,0.58]	chr16	661631	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ESRP2	ENSG00000103067.14	ENST00000473183.7:ENST00000565858.5:ENST00000251366.7:ENST00000562738.5:ENST00000562567.6:ENST00000569964.5:ENST00000564465.1:ENST00000563159.5:ENST00000564382.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.71922	4.81072	4.90222	0.0721601	0.0125132	0.168159	0.0765738
chr7	98242214	98242308	3647990	0	-	0.56383	(0.523,0.58]	chr7	351148	6	INTRON	INTRON	TECPR1	ENSG00000205356.10	ENST00000447648.7:ENST00000471397.1:ENST00000463648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	42	2	4.71922	4.81072	4.90222	0.0721601	0.0125132	0.168159	0.0765738
chr9	129338917	129339017	4250326	0	+	0.54	(0.523,0.58]	chr9	404660	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LINC01503	ENSG00000233901.7	ENST00000427109.2:ENST00000654735.1:ENST00000654190.1:ENST00000657886.1:ENST00000661745.1:ENST00000436710.6:ENST00000660635.1:ENST00000657651.1:ENST00000665063.2:ENST00000667257.1:ENST00000690929.1:ENST00000654148.1:ENST00000444125.3:ENST00000666671.1:ENST00000660036.1:ENST00000657393.1:ENST00000659864.1	lncRNA	lncRNA	lncRNA	lncRNA	0	42	2	4.71922	4.81072	4.90222	0.0721601	0.0125132	0.168159	0.0765738
chr2	183211913	183212013	971071	0	+	0.4	(0.39,0.419]	chr2	106626	228	INTRON	INTRON	ENSG00000272800	ENSG00000272800.3	ENST00000661621.1:ENST00000608537.2	lncRNA	lncRNA	lncRNA	lncRNA	1	104	2	3.22582	4.810665	6.39551	0.0176855	0.00743138	0.093839	0.057548
chr18	49046500	49046600	7158126	0	-	0.38	(0.36,0.39]	chr18	727833	19	INTRON	INTRON	DYM	ENSG00000141627.14	ENST00000675505.1:ENST00000269445.10:ENST00000442713.6:ENST00000577734.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.6317	4.810560000000001	4.98942	0.0950937	0.0141427	0.189021	0.0833845
chr2	151868777	151868876	1281286	0	-	0.363636	(0.36,0.39]	chr2	138001	31	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	CACNB4	ENSG00000182389.20	ENST00000539935.7:ENST00000637547.1:ENST00000636901.1:ENST00000635738.1:ENST00000636130.1:ENST00000637217.1:ENST00000637309.1:ENST00000636350.1:ENST00000636598.1:ENST00000636831.1:ENST00000636617.1:ENST00000638005.1:ENST00000636507.1:ENST00000637232.1:ENST00000635930.1:ENST00000636442.1:ENST00000636785.1:ENST00000638091.1:ENST00000636773.1:ENST00000637132.1:ENST00000637762.1:ENST00000637550.1:ENST00000637312.1:ENST00000637436.1:ENST00000635803.1:ENST00000636762.1:ENST00000534999.6:ENST00000637913.1:ENST00000637284.1:ENST00000439467.6:ENST00000637319.1:ENST00000637418.1:ENST00000397327.7:ENST00000637330.1:ENST00000638040.1:ENST00000427385.6:ENST00000636721.1:ENST00000636664.1:ENST00000637779.1:ENST00000636380.1:ENST00000636108.1:ENST00000637535.1:ENST00000637491.1:ENST00000360283.11:ENST00000636810.1:ENST00000637530.1:ENST00000635904.1:ENST00000638150.1:ENST00000637514.1:ENST00000637956.1:ENST00000637007.1:ENST00000637828.1:ENST00000637765.1:ENST00000201943.10:ENST00000637773.1:ENST00000637216.1:ENST00000636390.1:ENST00000636834.1:ENST00000637622.1:ENST00000636947.1:ENST00000637884.1:ENST00000470066.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.6317	4.810560000000001	4.98942	0.0950937	0.0141427	0.189021	0.0833845
chr7	129226138	129226238	3475460	0	+	0.39	(0.36,0.39]	chr7	335957	3	INTRON	INTRON	AHCYL2	ENSG00000158467.17	ENST00000325006.8:ENST00000446544.6	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.6317	4.810560000000001	4.98942	0.0950937	0.0141427	0.189021	0.0833845
chr19	35000686	35000786	7244863	0	+	0.78	(0.58,1]	chr19	742058	2	SS5_PROX	SS5_PROX:INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	201	2	3.58815	4.81043	6.03271	0.00377613	4.18183e-4	0.0396337	0.00770005
chr19	38310441	38310541	7375822	0	-	0.46	(0.45,0.485]	chr19	764695	4	INTRON	INTRON	YIF1B	ENSG00000167645.17	ENST00000339413.11:ENST00000592694.5:ENST00000337679.12:ENST00000591784.5:ENST00000329420.12:ENST00000591755.5:ENST00000589644.1:ENST00000585563.5:ENST00000589247.1:ENST00000587361.1:ENST00000587039.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	44	2	4.50852	4.81041	5.1123	0.0458344	0.0302873	0.142336	0.126768
chr6	3147935	3148034	2828618	0	+	0.484848	(0.45,0.485]	chr6	277604	71	INTRON	INTRON	BPHL	ENSG00000137274.13	ENST00000434640.5:ENST00000430655.6:ENST00000424847.6:ENST00000433912.5:ENST00000380379.10:ENST00000490918.5:ENST00000380375.4:ENST00000488487.2:ENST00000423798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.50852	4.81041	5.1123	0.0458344	0.0302873	0.142336	0.126768
chr15	49627791	49627890	6101956	0	+	0.383838	(0.36,0.39]	chr15	600880	5	INTRON	INTRON	DTWD1	ENSG00000104047.15	ENST00000557968.5:ENST00000559223.5:ENST00000403028.8:ENST00000558653.5:ENST00000557988.5:ENST00000559164.5:ENST00000560735.5:ENST00000560632.5:ENST00000559405.5:ENST00000251250.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.79458	4.81015	4.82572	0.0751666	0.0207145	0.172839	0.102713
chr17	17741950	17742050	6689455	0	+	0.38	(0.36,0.39]	chr17	671344	174	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.79458	4.81015	4.82572	0.0751666	0.0207145	0.172839	0.102713
chr6	170396477	170396577	3076544	0	+	0.39	(0.36,0.39]	chr6	299192	5	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.79458	4.81015	4.82572	0.0751666	0.0207145	0.172839	0.102713
chr7	29461614	29461714	3336977	0	+	0.39	(0.36,0.39]	chr7	322914	604	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000474070.5:ENST00000222792.11:ENST00000446446.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.79458	4.81015	4.82572	0.0751666	0.0207145	0.172839	0.102713
chr3	58102540	58102640	1483992	0	+	0.4	(0.39,0.419]	chr3	159631	2	SS5_PROX	SS5_PROX:INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1:ENST00000493452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	50	2	4.09132	4.809915	5.52851	0.0689553	0.029339	0.193274	0.116079
chr20	38992625	38992725	7477939	0	+	0.32	(0.29,0.33]	chr20	778740	2	SS5_PROX	SS5_PROX:INTRON	DHX35	ENSG00000101452.15	ENST00000373325.6:ENST00000252011.8:ENST00000373323.8:ENST00000652169.1:ENST00000484417.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.72635	4.80988	4.89341	0.0672935	0.0135896	0.163263	0.0811697
chr16	87281616	87281716	6654058	0	-	0.4	(0.39,0.419]	chr16	665597	1402	INTRON	INTRON	C16orf95	ENSG00000260456.7	ENST00000562840.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	43	2	4.63037	4.809615	4.98886	0.0963077	0.0142222	0.189169	0.0833845
chr16	68319533	68319632	6476837	0	+	0.373737	(0.36,0.39]	chr16	643277	6	INTRON	INTRON	PRMT7	ENSG00000132600.18	ENST00000686904.1:ENST00000562381.7:ENST00000689486.1:ENST00000693200.1:ENST00000685141.1:ENST00000562050.6:ENST00000565745.6:ENST00000685109.1:ENST00000689637.1:ENST00000692867.1:ENST00000693670.1:ENST00000692760.1:ENST00000687654.1:ENST00000441236.3:ENST00000675132.1:ENST00000688470.1:ENST00000691833.1:ENST00000690432.1:ENST00000691804.1:ENST00000691961.1:ENST00000690932.1:ENST00000692632.1:ENST00000687444.1:ENST00000692283.1:ENST00000569571.5:ENST00000692621.1:ENST00000566341.5:ENST00000686053.1:ENST00000692966.1:ENST00000691663.1:ENST00000564050.6:ENST00000449359.7:ENST00000569047.7:ENST00000693309.1:ENST00000690311.1:ENST00000565356.5:ENST00000564441.6:ENST00000563520.5:ENST00000687558.1:ENST00000339507.9:ENST00000688969.1:ENST00000568975.5:ENST00000563562.5:ENST00000561806.5:ENST00000562456.1:ENST00000566430.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.56926	4.809374999999999	5.04949	0.0563927	0.031369	0.154188	0.127822
chr21	44811194	44811292	7678245	0	-	0.387755	(0.36,0.39]	chr21	802721	17	INTRON	INTRON	SUMO3	ENSG00000184900.16	ENST00000479153.1:ENST00000411651.6:ENST00000332859.11:ENST00000397898.7:ENST00000397893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.56926	4.809374999999999	5.04949	0.0563927	0.031369	0.154188	0.127822
chr7	105072521	105072621	3442677	0	+	0.39	(0.36,0.39]	chr7	333183	36	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000495267.5:ENST00000476671.5:ENST00000667857.1:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.56926	4.809374999999999	5.04949	0.0563927	0.031369	0.154188	0.127822
chrX	2233724	2233824	7966175	0	-	0.38	(0.36,0.39]	chrX	834328	121	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.56926	4.809374999999999	5.04949	0.0563927	0.031369	0.154188	0.127822
chr4	913758	913848	2178758	0	-	0.577778	(0.523,0.58]	chr4	220688	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000512325.3:ENST00000510022.5:ENST00000511229.5:ENST00000511983.5:ENST00000507124.1:ENST00000628912.1:ENST00000513935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.65157	4.809355	4.96714	0.0787008	0.0108948	0.175203	0.0706366
chr16	85391635	85391735	6516987	0	+	0.46	(0.45,0.485]	chr16	646391	323	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.11446	4.809340000000001	5.50422	0.0592571	0.0257993	0.176157	0.109555
chr18	6118308	6118408	7110897	0	-	0.47	(0.45,0.485]	chr18	723846	244	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000400105.6:ENST00000317931.12:ENST00000400104.7	protein_coding	protein_coding	protein_coding	protein_coding	0	49	2	4.11446	4.809340000000001	5.50422	0.0592571	0.0257993	0.176157	0.109555
chr18	77029776	77029876	7180612	0	-	0.48	(0.45,0.485]	chr18	730157	121	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000580402.5:ENST00000580473.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000495162.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	49	2	4.11446	4.809340000000001	5.50422	0.0592571	0.0257993	0.176157	0.109555
chr8	18991388	18991488	3951914	0	-	0.58	(0.523,0.58]	chr8	377308	511	INTRON	INTRON	PSD3	ENSG00000156011.18	ENST00000327040.13:ENST00000440756.4:ENST00000521475.1:ENST00000521841.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	93	2	3.62427	4.80929	5.99431	0.0104033	0.0060311	0.0686837	0.0484641
chr16	14595949	14596048	6553826	0	-	0.40404	(0.39,0.419]	chr16	652381	22	INTRON	INTRON	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11:ENST00000539279.5:ENST00000651049.1:ENST00000650960.1:ENST00000651634.1:ENST00000564113.6:ENST00000652411.1:ENST00000652501.1:ENST00000651027.1:ENST00000651913.1:ENST00000563641.6:ENST00000569444.5:ENST00000651241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.79402	4.809205	4.82439	0.0762206	0.0208208	0.174484	0.102713
chr15	44832014	44832108	6249563	0	-	0.5	(0.485,0.523]	chr15	615523	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SORD2P	ENSG00000259479.6	ENST00000561384.3:ENST00000558556.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	42	2	4.71964	4.80917	4.8987	0.0718646	0.0129327	0.168159	0.0778105
chr3	105490536	105490636	1526701	0	+	0.41	(0.39,0.419]	chr3	162334	493	INTRON	INTRON	ALCAM	ENSG00000170017.12	ENST00000306107.9:ENST00000470756.5:ENST00000472644.6:ENST00000481337.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	102	2	3.30655	4.809105	6.31166	0.0148983	0.00855563	0.0847741	0.0621561
chr10	80201127	80201227	4721383	0	-	0.55	(0.523,0.58]	chr10	450577	49	INTRON	INTRON	ANXA11	ENSG00000122359.18	ENST00000372231.7:ENST00000438331.5:ENST00000422982.8:ENST00000463657.1:ENST00000474545.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.78384	4.8090399999999995	4.83424	0.0663135	0.0144272	0.162385	0.0833845
chr11	71109640	71109740	5065393	0	-	0.53	(0.523,0.58]	chr11	492773	3	SS5_PROX	SS5_PROX:INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.78384	4.8090399999999995	4.83424	0.0663135	0.0144272	0.162385	0.0833845
chr7	47477305	47477405	3588581	0	-	0.58	(0.523,0.58]	chr7	346123	242	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.78384	4.8090399999999995	4.83424	0.0663135	0.0144272	0.162385	0.0833845
chr17	39672068	39672155	6898419	0	-	0.655172	(0.58,1]	chr17	700784	1	CDS	CDS:UTR3:EXON_MRNA	PGAP3	ENSG00000161395.14	ENST00000579146.5:ENST00000300658.9:ENST00000378011.8:ENST00000309862.10:ENST00000619169.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	102	2	3.43525	4.8088750000000005	6.1825	0.0187495	2.66047e-4	0.0936297	0.00556524
chr12	112217295	112217395	5503209	0	-	0.42	(0.419,0.45]	chr12	541886	1	SS3_PROX	SS3_PROX:INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000651701.1:ENST00000550968.5:ENST00000552437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	4.47684	4.80867	5.1405	0.0550015	0.0389508	0.153337	0.142578
chr21	6113651	6113749	7588909	0	+	0.428571	(0.419,0.45]	chr21	793465	4	INTRON	INTRON	ENSG00000275993	ENSG00000275993.3	ENST00000613488.3	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.47684	4.80867	5.1405	0.0550015	0.0389508	0.153337	0.142578
chr8	124660614	124660714	4064263	0	-	0.47	(0.45,0.485]	chr8	387128	413	INTRON	INTRON	MTSS1	ENSG00000170873.19	ENST00000518547.6:ENST00000378017.7:ENST00000325064.9:ENST00000522162.1:ENST00000529463.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	121	2	3.79041	4.808655	5.8269	0.014451	0.00167585	0.0823104	0.0203806
chr2	149594734	149594834	919893	0	+	0.32	(0.29,0.33]	chr2	102788	3	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	2	153	2	4.30207	4.808624999999999	5.31518	0.0288318	2.95725e-4	0.116067	0.00601573
chr8	22064233	22064331	3769014	0	+	0.397959	(0.39,0.419]	chr8	362410	44	INTRON	INTRON	DMTN	ENSG00000158856.19	ENST00000522148.5:ENST00000523300.5:ENST00000519959.1:ENST00000381470.7:ENST00000519850.5:ENST00000432128.6:ENST00000443491.6:ENST00000517305.5:ENST00000518816.5:ENST00000517600.5:ENST00000523782.6:ENST00000520856.1:ENST00000523623.5:ENST00000358242.6:ENST00000520174.5:ENST00000517804.5:ENST00000265800.9:ENST00000517418.5:ENST00000523266.5:ENST00000519907.5:ENST00000415253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.56871	4.8084299999999995	5.04815	0.0572698	0.0315133	0.154343	0.127889
chr6	158021385	158021484	3059706	0	+	0.585859	(0.58,1]	chr6	297373	32	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	3.72143	4.80842	5.89541	0.0066708	0.00366718	0.0540577	0.0346803
chr17	44859681	44859742	6913156	0	-	0.491803	(0.485,0.523]	chr17	703949	1	SS5_PROX	SS5_PROX:INTRON	EFTUD2	ENSG00000108883.13	ENST00000426333.7:ENST00000586276.5:ENST00000592576.5:ENST00000591382.5:ENST00000590367.5:ENST00000402521.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	94	2	3.54218	4.808305000000001	6.07443	0.00899749	0.00747698	0.0637469	0.0555092
chr10	75493896	75493996	4521097	0	+	0.44	(0.419,0.45]	chr10	432249	423	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	1	99	2	3.62473	4.808265	5.9918	0.0162379	0.00764608	0.0873195	0.0563517
chr7	103924779	103924879	3663046	0	-	0.32	(0.29,0.33]	chr7	353511	72	INTRON	INTRON	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1:ENST00000681401.1:ENST00000679689.1:ENST00000681182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	116	2	4.76342	4.808135	4.85285	0.0567079	2.9105e-4	0.154343	0.00593644
chr14	69099280	69099380	6000647	0	-	0.45	(0.419,0.45]	chr14	588817	70	INTRON	INTRON	DCAF5	ENSG00000139990.18	ENST00000341516.10:ENST00000554215.5:ENST00000556847.5:ENST00000557386.5:ENST00000553293.5:ENST00000556111.1:ENST00000389997.10:ENST00000554681.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	100	2	3.4957	4.8078	6.1199	0.0132894	0.0102234	0.0787251	0.0678072
chr14	105342028	105342127	5926621	0	+	0.515152	(0.485,0.523]	chr14	580042	50	INTRON	INTRON	PACS2	ENSG00000179364.15	ENST00000430725.6:ENST00000325438.12:ENST00000447393.6:ENST00000685365.1:ENST00000686173.1:ENST00000547217.5:ENST00000686461.1:ENST00000548265.1:ENST00000689240.1:ENST00000546915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.65198	4.8077950000000005	4.96361	0.0783889	0.0112713	0.175203	0.071709
chr20	5822531	5822631	7424735	0	+	0.5	(0.485,0.523]	chr20	773468	491	INTRON	INTRON	SHLD1	ENSG00000171984.15	ENST00000303142.11:ENST00000445603.1:ENST00000442185.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.65198	4.8077950000000005	4.96361	0.0783889	0.0112713	0.175203	0.071709
chr10	46807998	46808098	4484763	0	+	0.5	(0.485,0.523]	chr10	428921	57	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000688259.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	42	2	4.78426	4.80749	4.83072	0.0660335	0.0148956	0.162385	0.0847741
chr2	239269986	239270086	1391408	0	-	0.52	(0.485,0.523]	chr2	148740	184	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	42	2	4.78426	4.80749	4.83072	0.0660335	0.0148956	0.162385	0.0847741
chr5	97036515	97036614	2489745	0	+	0.494949	(0.485,0.523]	chr5	248102	81	UTR3	UTR3:EXON_MRNA	LNPEP	ENSG00000113441.16	ENST00000231368.10	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.78426	4.80749	4.83072	0.0660335	0.0148956	0.162385	0.0847741
chr2	239283475	239283575	1391543	0	-	0.63	(0.58,1]	chr2	148740	319	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	115	2	3.2803	4.807335	6.33437	0.00374905	0.00276493	0.0352817	0.0332418
chr7	130911409	130911509	3711090	0	-	0.38	(0.36,0.39]	chr7	356708	267	INTRON	INTRON	ENSG00000226380	ENSG00000226380.9	ENST00000432045.6:ENST00000447307.5:ENST00000418546.1	lncRNA	lncRNA	lncRNA	lncRNA	3	169	2	3.58696	4.80725	6.02754	0.0133452	0.00153776	0.0789398	0.0191731
chr9	128987031	128987088	4249126	0	+	0.438596	(0.419,0.45]	chr9	404309	2	SS5_PROX	SS5_PROX:INTRON	NUP188	ENSG00000095319.14	ENST00000372577.2:ENST00000477069.5:ENST00000491502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	133	2	3.3319	4.8069749999999996	6.28205	0.0102557	0.00549523	0.0684871	0.0454065
chr11	74625773	74625873	4894180	0	+	0.34	(0.33,0.36]	chr11	472427	2	SS5_PROX	SS5_PROX:INTRON	POLD3	ENSG00000077514.9	ENST00000263681.7:ENST00000527458.5:ENST00000532497.5:ENST00000524752.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.40703	4.8069500000000005	5.20687	0.041040600000000003	0.0390931	0.142605	0.136289
chr12	79637618	79637717	5461568	0	-	0.333333	(0.33,0.36]	chr12	537126	16	INTRON	INTRON	PAWR	ENSG00000177425.11	ENST00000328827.9:ENST00000551712.1:ENST00000550006.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.40703	4.8069500000000005	5.20687	0.041040600000000003	0.0390931	0.142605	0.136289
chr5	61182837	61182936	2428041	0	+	0.353535	(0.33,0.36]	chr5	241961	20	INTRON	INTRON	SMIM15-AS1	ENSG00000251279.2	ENST00000506902.1	lncRNA	lncRNA	lncRNA	lncRNA	0	45	2	4.40703	4.8069500000000005	5.20687	0.041040600000000003	0.0390931	0.142605	0.136289
chr17	81139597	81139697	6982898	0	-	0.61	(0.58,1]	chr17	713268	47	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.66416	4.80649	4.94882	0.0354433	0.0144381	0.127188	0.0833845
chr8	143952735	143952833	4098648	0	-	0.744898	(0.58,1]	chr8	389857	20	INTRON	INTRON	PLEC	ENSG00000178209.17	ENST00000436759.6:ENST00000527303.2:ENST00000356346.7:ENST00000354958.6:ENST00000528025.6:ENST00000527096.5:ENST00000685198.1:ENST00000532346.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.66416	4.80649	4.94882	0.0354433	0.0144381	0.127188	0.0833845
chr9	133931464	133931564	4429717	0	-	0.6	(0.58,1]	chr9	423324	32	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1:ENST00000472905.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.66416	4.80649	4.94882	0.0354433	0.0144381	0.127188	0.0833845
chr17	15467621	15467720	6860111	0	-	0.575758	(0.523,0.58]	chr17	695071	1	INTRON	INTRON	TVP23C-CDRT4:CDRT4	ENSG00000259024.6:ENSG00000239704.11	ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	112	2	3.35121	4.80617	6.26113	0.0284134	4.27166e-4	0.114906	0.00779962
chr11	116990535	116990635	5133170	0	-	0.35	(0.33,0.36]	chr11	498440	331	INTRON	INTRON	SIK3	ENSG00000160584.17	ENST00000445177.6:ENST00000375300.6:ENST00000446921.6:ENST00000415541.5:ENST00000485363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.49572	4.80613	5.11654	0.103264	0.00998589	0.197541	0.0667545
chr21	43931944	43932044	7625100	0	+	0.36	(0.33,0.36]	chr21	796903	61	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.49572	4.80613	5.11654	0.103264	0.00998589	0.197541	0.0667545
chr2	11335001	11335101	1089305	0	-	0.3	(0.29,0.33]	chr2	118747	469	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	325	2	4.72086	4.8059449999999995	4.89103	0.00151969	8.28785e-5	0.0240549	0.00237609
chr14	104778191	104778286	6057671	0	-	0.705263	(0.58,1]	chr14	594698	16	EXON_MRNA	EXON_MRNA:INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000557552.1:ENST00000683722.1:ENST00000555528.5:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000554848.5:ENST00000682269.1:ENST00000555380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	110	2	3.97579	4.80561	5.63543	0.00655968	0.00131165	0.0536645	0.0171898
chr1	150007049	150007149	585337	0	-	0.45	(0.419,0.45]	chr1	67589	291	INTRON	INTRON	OTUD7B	ENSG00000264522.6	ENST00000581312.6:ENST00000417191.2	protein_coding	protein_coding	protein_coding	protein_coding	2	150	2	2.57738	4.80541	7.03344	0.0294759	0.00288012	0.125644	0.0341432
chr1	12586734	12586833	402470	0	-	0.50505	(0.485,0.523]	chr1	46222	57	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	96	2	3.38908	4.80539	6.2217	0.0107186	0.00693912	0.0700744	0.0553898
chr2	175599772	175599872	959344	0	+	0.49	(0.485,0.523]	chr2	105443	48	INTRON	INTRON	ENSG00000289349	ENSG00000289349.1	ENST00000692740.1:ENST00000685522.1	lncRNA	lncRNA	lncRNA	lncRNA	1	96	2	3.38908	4.80539	6.2217	0.0107186	0.00693912	0.0700744	0.0553898
chr1	31937754	31937785	437551	0	-	0.645161	(0.58,1]	chr1	52121	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.3962	4.804985	5.21377	0.0250928	0.0230012	0.114418	0.102982
chr22	46615885	46615985	7744334	0	+	0.61	(0.58,1]	chr22	812034	382	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000447351.5:ENST00000431155.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.3962	4.804985	5.21377	0.0250928	0.0230012	0.114418	0.102982
chr20	53500013	53500113	7581411	0	-	0.34	(0.33,0.36]	chr20	792011	381	INTRON	INTRON	ENSG00000259723	ENSG00000259723.1	ENST00000558738.1	lncRNA	lncRNA	lncRNA	lncRNA	0	46	2	4.31234	4.80494	5.29754	0.0458858	0.0360263	0.154743	0.127853
chr12	57822309	57822409	5442238	0	-	0.54	(0.523,0.58]	chr12	535683	25	UTR3	UTR3:EXON_MRNA	CTDSP2	ENSG00000175215.11	ENST00000398073.7	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.58058	4.804925000000001	5.02927	0.0860403	0.0095202	0.181766	0.0650078
chr16	50068011	50068111	6447972	0	+	0.53	(0.523,0.58]	chr16	639462	3	SS5_PROX	SS5_PROX:INTRON	HEATR3	ENSG00000155393.14	ENST00000690683.1:ENST00000299192.8:ENST00000685571.1:ENST00000561819.1:ENST00000692328.1:ENST00000691604.1:ENST00000693352.1:ENST00000689598.1:ENST00000693599.1:ENST00000691270.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.58058	4.804925000000001	5.02927	0.0860403	0.0095202	0.181766	0.0650078
chr22	37512339	37512437	7808330	0	-	0.520408	(0.485,0.523]	chr22	818439	2	INTRON	INTRON	CARD10	ENSG00000100065.15	ENST00000403299.5:ENST00000251973.10:ENST00000494166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	136	2	2.74097	4.804914999999999	6.86886	0.0180255	0.00208565	0.0952934	0.0287557
chr15	57513279	57513379	6115661	0	+	0.39	(0.36,0.39]	chr15	601853	510	INTRON	INTRON	CGNL1	ENSG00000128849.11	ENST00000281282.6	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.56076	4.804845	5.04893	0.103289	0.0125348	0.197541	0.0765738
chr3	24273147	24273247	1714253	0	-	0.38	(0.36,0.39]	chr3	177980	347	INTRON	INTRON	THRB	ENSG00000151090.20	ENST00000646209.2:ENST00000396671.7:ENST00000356447.9:ENST00000646432.1:ENST00000643772.1:ENST00000645139.1:ENST00000642307.1:ENST00000644321.1:ENST00000646966.1:ENST00000416420.5:ENST00000413780.5:ENST00000447875.5:ENST00000453729.6:ENST00000431815.5:ENST00000447414.5:ENST00000428492.5:ENST00000418247.1:ENST00000646300.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.56076	4.804845	5.04893	0.103289	0.0125348	0.197541	0.0765738
chr19	324534	324634	7303121	0	-	0.47	(0.45,0.485]	chr19	752407	105	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	1	99	2	3.30591	4.804645	6.30338	0.0135996	0.00692617	0.0811697	0.0553898
chr11	70701962	70702062	5061300	0	-	0.43	(0.419,0.45]	chr11	492696	28	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.69033	4.804410000000001	4.91849	0.0958674	0.0174488	0.189038	0.0928044
chr11	70743483	70743583	5061716	0	-	0.44	(0.419,0.45]	chr11	492701	256	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.69033	4.804410000000001	4.91849	0.0958674	0.0174488	0.189038	0.0928044
chr17	55786965	55787065	6758091	0	+	0.44	(0.419,0.45]	chr17	681774	97	INTRON	INTRON	PCTP	ENSG00000141179.14	ENST00000573500.5:ENST00000576221.1:ENST00000572536.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.69033	4.804410000000001	4.91849	0.0958674	0.0174488	0.189038	0.0928044
chr19	23323478	23323578	7358018	0	-	0.42	(0.419,0.45]	chr19	762771	130	INTRON	INTRON	ZNF91	ENSG00000167232.14	ENST00000596528.1:ENST00000596989.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	43	2	4.69033	4.804410000000001	4.91849	0.0958674	0.0174488	0.189038	0.0928044
chr8	108459199	108459298	3902479	0	+	0.444444	(0.419,0.45]	chr8	372963	29	INTRON	INTRON	EMC2	ENSG00000104412.8	ENST00000220853.8:ENST00000517784.5:ENST00000519642.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.69033	4.804410000000001	4.91849	0.0958674	0.0174488	0.189038	0.0928044
chr1	9876912	9877010	398498	0	-	0.571429	(0.523,0.58]	chr1	45374	45	INTRON	INTRON	CTNNBIP1	ENSG00000178585.15	ENST00000377263.6:ENST00000400904.7:ENST00000377258.5:ENST00000377256.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.7629	4.804295	4.84569	0.0610722	0.0167014	0.158506	0.0917029
chr11	12813923	12814023	4803041	0	+	0.53	(0.523,0.58]	chr11	460563	491	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.7629	4.804295	4.84569	0.0610722	0.0167014	0.158506	0.0917029
chr18	58205558	58205657	7073074	0	+	0.424242	(0.419,0.45]	chr18	721147	73	INTRON	INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000676223.1:ENST00000675147.1:ENST00000591989.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5:ENST00000588516.5:ENST00000456986.5:ENST00000675502.1:ENST00000675137.1:ENST00000357895.9:ENST00000435432.6:ENST00000586263.5:ENST00000456173.6:ENST00000676251.1:ENST00000676226.1:ENST00000675865.1:ENST00000588494.5:ENST00000675221.1:ENST00000588066.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.7549	4.8042750000000005	4.85365	0.0888907	0.0197641	0.183874	0.100774
chr2	36982889	36982988	1120720	0	-	0.454545	(0.45,0.485]	chr2	122439	7	INTRON	INTRON	HEATR5B	ENSG00000008869.12	ENST00000425467.5:ENST00000233099.6	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.22352	4.8042750000000005	5.38503	0.0496712	0.0308908	0.160725	0.119556
chr2	75554983	75555083	1194729	0	-	0.45	(0.419,0.45]	chr2	129875	284	INTRON	INTRON	EVA1A	ENSG00000115363.14	ENST00000485891.1:ENST00000490746.5:ENST00000233712.5:ENST00000393913.8:ENST00000410113.5:ENST00000410071.5:ENST00000432649.5:ENST00000486696.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.7549	4.8042750000000005	4.85365	0.0888907	0.0197641	0.183874	0.100774
chr3	119926426	119926526	1885421	0	-	0.44	(0.419,0.45]	chr3	191353	21	INTRON	INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000677502.1:ENST00000676566.1:ENST00000650344.2:ENST00000678181.1:ENST00000678561.1:ENST00000678787.1:ENST00000679066.1:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000677885.1:ENST00000678350.1:ENST00000676775.1:ENST00000677878.1:ENST00000677875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.7549	4.8042750000000005	4.85365	0.0888907	0.0197641	0.183874	0.100774
chr9	123901806	123901906	4401612	0	-	0.48	(0.45,0.485]	chr9	419733	224	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.22352	4.8042750000000005	5.38503	0.0496712	0.0308908	0.160725	0.119556
chr4	128858150	128858249	2132069	0	+	0.434343	(0.419,0.45]	chr4	216567	3	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	2	136	2	3.61662	4.804209999999999	5.9918	0.0162379	0.0027153	0.0873195	0.028553
chr10	34683868	34683967	4670495	0	-	0.383838	(0.36,0.39]	chr10	445537	43	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.72331	4.804155	4.885	0.0697729	0.0236929	0.167185	0.111208
chr9	129485913	129486011	4250629	0	+	0.377551	(0.36,0.39]	chr9	404695	19	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5	lncRNA	lncRNA	lncRNA	lncRNA	0	43	2	4.72331	4.804155	4.885	0.0697729	0.0236929	0.167185	0.111208
chr22	28283202	28283302	7777858	0	-	0.31	(0.29,0.33]	chr22	815718	505	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7:ENST00000612946.4	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.58769	4.804055	5.02042	0.0806047	0.0103902	0.177452	0.0682598
chr3	71413659	71413759	1829585	0	-	0.31	(0.29,0.33]	chr3	188242	530	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000649145.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.58769	4.804055	5.02042	0.0806047	0.0103902	0.177452	0.0682598
chr7	40532603	40532703	3357848	0	+	0.32	(0.29,0.33]	chr7	324373	332	INTRON	INTRON	SUGCT	ENSG00000175600.16	ENST00000335693.9:ENST00000401647.7:ENST00000628514.3	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.58769	4.804055	5.02042	0.0806047	0.0103902	0.177452	0.0682598
chr7	139706640	139706740	3723212	0	-	0.56	(0.523,0.58]	chr7	357498	746	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	1	92	2	3.78755	4.80397	5.82039	0.0139724	0.00401039	0.0805959	0.0371192
chr9	4828222	4828320	4109472	0	+	0.418367	(0.39,0.419]	chr9	391326	8	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.55943	4.803895	5.04836	0.104562	0.0126072	0.19835	0.0768036
chr8	38772490	38772589	3802280	0	+	0.50505	(0.485,0.523]	chr8	365828	147	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	93	2	3.61303	4.803885	5.99474	0.0103305	0.00630038	0.0684871	0.0501647
chr16	53170627	53170727	6455252	0	+	0.3	(0.29,0.33]	chr16	640128	127	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000565832.5:ENST00000564845.5:ENST00000398510.7:ENST00000564255.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.75412	4.803485	4.85285	0.0567079	0.0180435	0.154343	0.0952934
chr20	13616062	13616160	7527723	0	-	0.316327	(0.29,0.33]	chr20	785645	8	INTRON	INTRON	TASP1	ENSG00000089123.16	ENST00000480436.5:ENST00000337743.9:ENST00000465381.5:ENST00000455532.5:ENST00000476108.5:ENST00000483898.1:ENST00000434275.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.75412	4.803485	4.85285	0.0567079	0.0180435	0.154343	0.0952934
chr10	75884424	75884524	4525013	0	+	0.43	(0.419,0.45]	chr10	432292	5	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	100	2	3.97869	4.80337	5.62805	0.0280406	0.00330911	0.113651	0.0324356
chr15	101360120	101360220	6363140	0	-	0.51	(0.485,0.523]	chr15	627205	37	INTRON	INTRON	PCSK6	ENSG00000140479.18	ENST00000677364.1:ENST00000676598.1:ENST00000558951.5:ENST00000398185.6:ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000679007.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000559605.1:ENST00000560902.5:ENST00000611967.4:ENST00000615296.4:ENST00000676494.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.581	4.803365	5.02573	0.085711	0.00985879	0.181766	0.0664239
chr17	72534776	72534876	6963658	0	-	0.52	(0.485,0.523]	chr17	710389	3	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	0	42	2	4.581	4.803365	5.02573	0.085711	0.00985879	0.181766	0.0664239
chr22	24092095	24092178	7695279	0	+	0.506024	(0.485,0.523]	chr22	805503	2	SS5_PROX	SS5_PROX:INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.581	4.803365	5.02573	0.085711	0.00985879	0.181766	0.0664239
chr3	47443147	47443224	1760984	0	-	0.506494	(0.485,0.523]	chr3	181606	3	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000648151.1:ENST00000416208.5:ENST00000416847.5:ENST00000495603.2:ENST00000448217.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.581	4.803365	5.02573	0.085711	0.00985879	0.181766	0.0664239
chr2	152593343	152593443	928052	0	+	0.28	[0,0.29]	chr2	103106	119	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14:ENST00000492942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.68855	4.80332	4.91809	0.0554735	0.0107911	0.154188	0.0704469
chr16	16124488	16124588	6407777	0	+	0.41	(0.39,0.419]	chr16	633165	3	SS3_PROX	SS3_PROX:INTRON	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000676806.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.72276	4.80321	4.88366	0.0707789	0.0238104	0.168159	0.111436
chr21	45476980	45477062	7631040	0	+	0.414634	(0.39,0.419]	chr21	797687	1	SS3_PROX	SS3_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.72276	4.80321	4.88366	0.0707789	0.0238104	0.168159	0.111436
chr12	106957549	106957649	5320080	0	+	0.34	(0.33,0.36]	chr12	518156	4	SS5_PROX	SS5_PROX:INTRON	TMEM263	ENSG00000151135.10	ENST00000548125.5:ENST00000547242.5:ENST00000551489.5:ENST00000550344.5:ENST00000280756.9:ENST00000547081.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.49588	4.803	5.11012	0.04702	0.033477	0.143232	0.133139
chr20	38992525	38992625	7477938	0	+	0.34	(0.33,0.36]	chr20	778740	1	SS5_PROX	SS5_PROX:INTRON	DHX35	ENSG00000101452.15	ENST00000373325.6:ENST00000252011.8:ENST00000373323.8:ENST00000652169.1:ENST00000484417.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.49588	4.803	5.11012	0.04702	0.033477	0.143232	0.133139
chr1	36293650	36293750	92483	0	+	0.36	(0.33,0.36]	chr1	10798	4	SS3_PROX	SS3_PROX:INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10:ENST00000466743.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	266	2	4.05386	4.8028949999999995	5.55193	0.00930731	3.49301e-5	0.0649153	0.00126213
chr14	68610805	68610905	5866989	0	+	0.41	(0.39,0.419]	chr14	573052	4	SS3_PROX	SS3_PROX:INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000488612.5:ENST00000553595.5:ENST00000554244.5:ENST00000478014.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	126	2	3.80298	4.80287	5.80276	0.0159069	0.00233691	0.0860271	0.0257208
chr1	44496336	44496436	112966	0	+	0.37	(0.36,0.39]	chr1	14018	766	INTRON	INTRON	RNF220	ENSG00000187147.18	ENST00000355387.6:ENST00000361799.7:ENST00000372247.6	protein_coding	protein_coding	protein_coding	protein_coding	1	184	2	4.74323	4.80286	4.86249	0.0181775	0.00300291	0.0955836	0.0348982
chr15	28652979	28653078	6068888	0	+	0.444444	(0.419,0.45]	chr15	596168	10	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	2	276	2	4.19029	4.802849999999999	5.41541	0.00899007	6.85922e-5	0.0637469	0.00207079
chr7	47572195	47572294	3589541	0	-	0.565657	(0.523,0.58]	chr7	346159	147	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.43597	4.80283	5.16969	0.0387762	0.0313935	0.131324	0.127822
chr16	50611255	50611355	6452040	0	+	0.51	(0.485,0.523]	chr16	639908	25	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.75939	4.80275	4.84611	0.0608067	0.0172254	0.158506	0.0923809
chr20	37503078	37503178	7559798	0	-	0.52	(0.485,0.523]	chr20	789575	33	EXON_LNCRNA	EXON_LNCRNA:INTRON	BLCAP	ENSG00000166619.15	ENST00000411780.1:ENST00000613961.1:ENST00000467603.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	42	2	4.75939	4.80275	4.84611	0.0608067	0.0172254	0.158506	0.0923809
chr3	66021597	66021697	1815698	0	-	0.52	(0.485,0.523]	chr3	187318	125	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.75939	4.80275	4.84611	0.0608067	0.0172254	0.158506	0.0923809
chr16	81686296	81686395	6510174	0	+	0.59596	(0.58,1]	chr16	645979	73	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.49116	4.802355	5.11355	0.0271806	0.0207449	0.112113	0.102713
chr2	241669752	241669846	1078229	0	+	0.595745	(0.58,1]	chr2	117195	7	INTRON	INTRON	ATG4B	ENSG00000168397.17	ENST00000405546.7:ENST00000402096.5:ENST00000494465.5:ENST00000404914.8:ENST00000482507.5:ENST00000344376.9:ENST00000428861.1:ENST00000460211.5:ENST00000475693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.49116	4.802355	5.11355	0.0271806	0.0207449	0.112113	0.102713
chr22	37493885	37493985	7808119	0	-	0.61	(0.58,1]	chr22	818360	4	SS5_PROX	SS5_PROX:INTRON	CARD10	ENSG00000100065.15	ENST00000403299.5:ENST00000251973.10:ENST00000488141.5:ENST00000467812.1:ENST00000406271.7:ENST00000437756.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.49116	4.802355	5.11355	0.0271806	0.0207449	0.112113	0.102713
chr19	39156950	39157050	7259578	0	+	0.58	(0.523,0.58]	chr19	744160	1	SS5_PROX	SS5_PROX:INTRON	PAK4	ENSG00000130669.17	ENST00000602004.1:ENST00000599470.5:ENST00000360442.8:ENST00000321944.8:ENST00000593480.5:ENST00000358301.7:ENST00000593690.5:ENST00000599386.5:ENST00000599657.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.34118	4.80225	5.26332	0.0372357	0.0337698	0.139793	0.124319
chr16	85374842	85374942	6516819	0	+	0.57	(0.523,0.58]	chr16	646391	155	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	48	2	4.13061	4.802215	5.47382	0.0533354	0.0244797	0.167062	0.106683
chr15	58791626	58791725	6118646	0	+	0.313131	(0.29,0.33]	chr15	602067	33	INTRON	INTRON	MINDY2	ENSG00000128923.11	ENST00000316848.9:ENST00000560289.5:ENST00000559228.6:ENST00000450403.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.42727	4.802085	5.1769	0.035586	0.0335282	0.133139	0.127529
chr7	24854031	24854131	3554709	0	-	0.3	(0.29,0.33]	chr7	343456	10	INTRON	INTRON	OSBPL3	ENSG00000070882.13	ENST00000313367.7:ENST00000409863.5:ENST00000396431.5:ENST00000409452.5:ENST00000409759.5:ENST00000409555.5:ENST00000396429.5:ENST00000409069.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.42727	4.802085	5.1769	0.035586	0.0335282	0.133139	0.127529
chr22	50296172	50296272	7827796	0	-	0.42	(0.419,0.45]	chr22	821465	10	INTRON	INTRON	PLXNB2	ENSG00000196576.16	ENST00000359337.9:ENST00000449103.5:ENST00000432455.5:ENST00000425954.1	protein_coding	protein_coding	protein_coding	protein_coding	0	50	2	4.08324	4.801985	5.52073	0.0727147	0.0327198	0.199502	0.122543
chr15	51901592	51901691	6108249	0	+	0.434343	(0.419,0.45]	chr15	601342	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMOD3	ENSG00000138594.14	ENST00000308580.12:ENST00000560549.5:ENST00000561438.5:ENST00000560725.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.62273	4.801635	4.98054	0.103601	0.0154548	0.197541	0.0869771
chr3	43326197	43326296	1453783	0	+	0.444444	(0.419,0.45]	chr3	155160	111	INTRON	INTRON	SNRK	ENSG00000163788.14	ENST00000454177.5:ENST00000429705.6:ENST00000296088.12:ENST00000437827.1:ENST00000462810.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.62273	4.801635	4.98054	0.103601	0.0154548	0.197541	0.0869771
chr5	883152	883251	2608208	0	-	0.454545	(0.45,0.485]	chr5	259476	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	353	2	4.40578	4.80148	5.19718	0.00479422	2.0636e-5	0.0452223	8.58491e-4
chr22	33768456	33768556	7801350	0	-	0.49	(0.485,0.523]	chr22	817639	65	INTRON	INTRON	LARGE1	ENSG00000133424.22	ENST00000397394.8:ENST00000413114.6:ENST00000676070.1:ENST00000674543.1:ENST00000676370.1:ENST00000354992.7:ENST00000402320.6:ENST00000675416.1:ENST00000676132.1:ENST00000674789.1:ENST00000675277.1:ENST00000434071.6:ENST00000432776.6:ENST00000423375.2:ENST00000430220.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.43249	4.801304999999999	5.17012	0.038581	0.0322299	0.131324	0.12988
chr1	226943979	226944079	355632	0	+	0.65	(0.58,1]	chr1	40145	30	INTRON	INTRON	COQ8A	ENSG00000163050.18	ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000489044.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	139	2	3.13672	4.80126	6.4658	0.0147505	1.09908e-4	0.0828332	0.00294443
chr1	148538148	148538237	582000	0	-	0.449438	(0.419,0.45]	chr1	66874	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF14	ENSG00000270629.7	ENST00000619423.4:ENST00000614999.4:ENST00000621066.4:ENST00000611826.4:ENST00000616120.4:ENST00000621070.4	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.78575	4.80123	4.81671	0.08258	0.0224633	0.179396	0.108193
chr11	70766066	70766166	5061942	0	-	0.42	(0.419,0.45]	chr11	492701	482	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.78575	4.80123	4.81671	0.08258	0.0224633	0.179396	0.108193
chr14	64709703	64709803	5844880	0	+	0.42	(0.419,0.45]	chr14	572049	46	INTRON	INTRON	PLEKHG3	ENSG00000126822.18	ENST00000555982.5:ENST00000247226.13:ENST00000394691.7	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.78575	4.80123	4.81671	0.08258	0.0224633	0.179396	0.108193
chr2	168507005	168507105	944686	0	+	0.42	(0.419,0.45]	chr2	103959	500	INTRON	INTRON	CERS6	ENSG00000172292.15	ENST00000392687.4:ENST00000305747.11	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.78575	4.80123	4.81671	0.08258	0.0224633	0.179396	0.108193
chr20	44361139	44361239	7482519	0	+	0.43	(0.419,0.45]	chr20	779618	49	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.78575	4.80123	4.81671	0.08258	0.0224633	0.179396	0.108193
chr2	152338019	152338119	925491	0	+	0.31	(0.29,0.33]	chr2	103058	19	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	1	96	2	4.16089	4.80112	5.44135	0.0236557	0.00158862	0.105002	0.019683
chr14	103102584	103102678	5921837	0	+	0.702128	(0.58,1]	chr14	579203	6	CDS	CDS:EXON_MRNA:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000559116.1:ENST00000560925.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.29454	4.801005	5.30747	0.0305531	0.0196049	0.126768	0.0955413
chr19	40090553	40090649	7379236	0	-	0.645833	(0.58,1]	chr19	765590	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF780A	ENSG00000197782.15	ENST00000450241.6:ENST00000414720.6:ENST00000455521.5:ENST00000340963.9:ENST00000683561.1:ENST00000595687.6:ENST00000595773.5:ENST00000601688.5:ENST00000599972.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	0	44	2	4.29454	4.801005	5.30747	0.0305531	0.0196049	0.126768	0.0955413
chr2	240624091	240624190	1075184	0	+	0.656566	(0.58,1]	chr2	116654	47	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.29454	4.801005	5.30747	0.0305531	0.0196049	0.126768	0.0955413
chr7	76996431	76996530	3398764	0	+	0.747475	(0.58,1]	chr7	328286	57	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	44	2	4.29454	4.801005	5.30747	0.0305531	0.0196049	0.126768	0.0955413
chr9	134363187	134363287	4261055	0	+	0.59	(0.58,1]	chr9	406311	362	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.29454	4.801005	5.30747	0.0305531	0.0196049	0.126768	0.0955413
chr7	47347652	47347752	3587267	0	-	0.55	(0.523,0.58]	chr7	346030	9	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	92	2	3.69181	4.80089	5.90997	0.012016	0.00510333	0.0743424	0.0433857
chr1	148557083	148557176	582237	0	-	0.505376	(0.485,0.523]	chr1	67010	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF14	ENSG00000270629.7	ENST00000619423.4:ENST00000614999.4:ENST00000621066.4:ENST00000611826.4:ENST00000616120.4:ENST00000621070.4	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.33772	4.8007349999999995	5.26375	0.03818	0.0335928	0.140822	0.124319
chr17	29129044	29129140	6876452	0	-	0.520833	(0.485,0.523]	chr17	697994	1	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000590242.5:ENST00000528564.2:ENST00000528322.6:ENST00000585573.6:ENST00000533420.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.33772	4.8007349999999995	5.26375	0.03818	0.0335928	0.140822	0.124319
chr22	45594812	45594912	7740234	0	+	0.52	(0.485,0.523]	chr22	811612	165	INTRON	INTRON	FBLN1	ENSG00000077942.19	ENST00000327858.11	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.33772	4.8007349999999995	5.26375	0.03818	0.0335928	0.140822	0.124319
chr3	172182345	172182444	1628897	0	+	0.515152	(0.485,0.523]	chr3	170559	334	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	45	2	4.33772	4.8007349999999995	5.26375	0.03818	0.0335928	0.140822	0.124319
chr4	68329202	68329301	2245683	0	-	0.515152	(0.485,0.523]	chr4	226374	46	INTRON	INTRON	YTHDC1	ENSG00000083896.13	ENST00000344157.9:ENST00000355665.7:ENST00000579690.5:ENST00000506175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.33772	4.8007349999999995	5.26375	0.03818	0.0335928	0.140822	0.124319
chr15	42897838	42897938	6243839	0	-	0.49	(0.485,0.523]	chr15	614391	188	INTRON	INTRON	TTBK2	ENSG00000128881.18	ENST00000267890.11:ENST00000567840.5:ENST00000567274.5:ENST00000564431.5:ENST00000562880.5:ENST00000566931.1:ENST00000567485.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.12717	4.80071	5.47425	0.0545434	0.0243396	0.167824	0.106588
chr13	50560119	50560219	5598226	0	+	0.46	(0.45,0.485]	chr13	551685	264	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1:ENST00000484869.6	lncRNA	lncRNA	lncRNA	lncRNA	1	94	2	3.67093	4.800635	5.93034	0.0130794	0.00582542	0.0782396	0.0473208
chr7	713791	713889	3525237	0	-	0.602041	(0.58,1]	chr7	340440	7	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000537384.6:ENST00000403562.5:ENST00000417852.5:ENST00000488474.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	114	2	3.33506	4.80052	6.26598	0.00321851	0.00318361	0.0360488	0.0319521
chr4	184460741	184460841	2366898	0	-	0.43	(0.419,0.45]	chr4	236383	43	INTRON	INTRON	IRF2	ENSG00000168310.12	ENST00000696840.1:ENST00000393593.8:ENST00000696846.1:ENST00000696845.1:ENST00000696844.1:ENST00000502750.2:ENST00000696843.1:ENST00000696842.1:ENST00000696852.1:ENST00000696853.1:ENST00000696851.1:ENST00000696850.1:ENST00000696849.1:ENST00000510814.6:ENST00000505067.6:ENST00000504340.2:ENST00000507523.5:ENST00000512020.5:ENST00000506230.5:ENST00000509274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.56048	4.8004549999999995	5.04043	0.0625897	0.0337332	0.160305	0.133139
chr9	105481047	105481145	4207901	0	+	0.44898	(0.419,0.45]	chr9	399620	13	INTRON	INTRON	FSD1L	ENSG00000106701.13	ENST00000495708.5:ENST00000481272.6:ENST00000394926.7:ENST00000484973.5:ENST00000480279.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.56048	4.8004549999999995	5.04043	0.0625897	0.0337332	0.160305	0.133139
chr9	129340085	129340180	4250338	0	+	0.431579	(0.419,0.45]	chr9	404662	8	INTRON	INTRON	LINC01503	ENSG00000233901.7	ENST00000427109.2:ENST00000654735.1:ENST00000654190.1:ENST00000657886.1:ENST00000661745.1:ENST00000436710.6:ENST00000660635.1:ENST00000657651.1:ENST00000665063.2:ENST00000667257.1:ENST00000690929.1:ENST00000654148.1:ENST00000444125.3:ENST00000666671.1:ENST00000660036.1:ENST00000657393.1:ENST00000659864.1	lncRNA	lncRNA	lncRNA	lncRNA	0	44	2	4.56048	4.8004549999999995	5.04043	0.0625897	0.0337332	0.160305	0.133139
chr19	7081059	7081159	7197128	0	+	0.48	(0.45,0.485]	chr19	733466	3	SS3_PROX	SS3_PROX:INTRON	ZNF557	ENSG00000130544.12	ENST00000252840.11:ENST00000414706.2	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.59225	4.80042	5.00859	0.052901	0.0259502	0.14912	0.116361
chr3	63862903	63863003	1808808	0	-	0.47	(0.45,0.485]	chr3	187066	83	INTRON	INTRON	THOC7	ENSG00000163634.12	ENST00000295899.10:ENST00000469584.5:ENST00000498422.5:ENST00000464327.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.59225	4.80042	5.00859	0.052901	0.0259502	0.14912	0.116361
chr13	40894565	40894665	5693919	0	-	0.27	[0,0.29]	chr13	558820	112	INTRON	INTRON	SUGT1P3	ENSG00000239827.8	ENST00000633814.1:ENST00000632487.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	41	2	4.61749	4.800265	4.98304	0.061376	0.00935344	0.158506	0.0646157
chr3	172305366	172305466	1630136	0	+	0.36	(0.33,0.36]	chr3	170608	62	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	96	2	3.91931	4.8002	5.68109	0.0201622	0.00339115	0.0973366	0.0329437
chr11	70874220	70874320	5063029	0	-	0.29	[0,0.29]	chr11	492728	12	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000645599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.77872	4.79984	4.82096	0.0456837	0.0145383	0.142336	0.0836469
chr16	52473838	52473938	6589126	0	-	0.23	[0,0.29]	chr16	658695	49	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.77872	4.79984	4.82096	0.0456837	0.0145383	0.142336	0.0836469
chr2	151486956	151487056	925241	0	+	0.28	[0,0.29]	chr2	103016	2	SS5_PROX	SS5_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000454583.6:ENST00000457745.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	41	2	4.77872	4.79984	4.82096	0.0456837	0.0145383	0.142336	0.0836469
chr1	12585839	12585939	402461	0	-	0.63	(0.58,1]	chr1	46222	48	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	222	2	4.70869	4.79967	4.89065	9.13847e-4	1.95782e-4	0.0180518	0.00445752
chr13	35044543	35044641	5569143	0	+	0.44898	(0.419,0.45]	chr13	549362	2	SS3_PROX	SS3_PROX:INTRON	NBEA	ENSG00000172915.20	ENST00000400445.8:ENST00000379939.7:ENST00000686320.1:ENST00000691351.1:ENST00000686972.1:ENST00000692628.1:ENST00000685717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	125	2	3.67133	4.798825	5.92632	0.021076	0.00191339	0.0996078	0.0223437
chr11	65443942	65444042	4871781	0	+	0.5	(0.485,0.523]	chr11	468177	213	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	65	6707	2	4.76168	4.798705	4.83573	1.70389e-4	2.41874e-6	0.00729818	1.89733e-4
chrX	2382361	2382461	7967667	0	-	0.36	(0.33,0.36]	chrX	834355	440	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	115	2	3.21861	4.798635	6.37866	0.0374008	4.63001e-4	0.130656	0.00825119
chr1	1307256	1307336	380919	0	-	0.625	(0.58,1]	chr1	43023	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACAP3	ENSG00000131584.19	ENST00000354700.10:ENST00000472541.5:ENST00000354980.7:ENST00000479108.5:ENST00000438966.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	103	2	3.66231	4.798525	5.93474	0.0122106	5.58693e-4	0.0752279	0.00944382
chr13	98144091	98144191	5633666	0	+	0.45	(0.419,0.45]	chr13	553452	2	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000600648.1:ENST00000596580.2:ENST00000376581.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.19215	4.79846	5.40477	0.0617113	0.0385125	0.18013	0.131324
chr22	48697861	48697961	7751246	0	+	0.42	(0.419,0.45]	chr22	812283	41	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	48	2	4.19215	4.79846	5.40477	0.0617113	0.0385125	0.18013	0.131324
chr18	62888367	62888467	7081773	0	+	0.48	(0.45,0.485]	chr18	721998	274	INTRON	INTRON	PHLPP1	ENSG00000081913.14	ENST00000262719.10:ENST00000588452.5:ENST00000487409.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.7111	4.798385	4.88567	0.0781398	0.0146126	0.175203	0.0837727
chr2	232072609	232072709	1052181	0	+	0.47	(0.45,0.485]	chr2	114547	422	INTRON	INTRON	DIS3L2	ENSG00000144535.20	ENST00000273009.10:ENST00000390005.9:ENST00000409401.7:ENST00000445090.5:ENST00000441279.5:ENST00000325385.12:ENST00000433430.5:ENST00000464554.5:ENST00000470087.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.7111	4.798385	4.88567	0.0781398	0.0146126	0.175203	0.0837727
chr2	235520826	235520926	1062804	0	+	0.47	(0.45,0.485]	chr2	115651	256	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.7111	4.798385	4.88567	0.0781398	0.0146126	0.175203	0.0837727
chr3	71320413	71320513	1828649	0	-	0.47	(0.45,0.485]	chr3	188221	13	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000648783.1:ENST00000650156.1:ENST00000649133.1:ENST00000493010.2:ENST00000649145.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.7111	4.798385	4.88567	0.0781398	0.0146126	0.175203	0.0837727
chr3	188827729	188827828	1658559	0	+	0.464646	(0.45,0.485]	chr3	173846	671	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000459897.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.7111	4.798385	4.88567	0.0781398	0.0146126	0.175203	0.0837727
chr5	32159461	32159561	2630509	0	-	0.47	(0.45,0.485]	chr5	261026	152	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.7111	4.798385	4.88567	0.0781398	0.0146126	0.175203	0.0837727
chr7	74498503	74498603	3391812	0	+	0.47	(0.45,0.485]	chr7	327343	440	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.7111	4.798385	4.88567	0.0781398	0.0146126	0.175203	0.0837727
chr9	6612145	6612244	4275130	0	-	0.424242	(0.419,0.45]	chr9	408387	14	INTRON	INTRON	GLDC	ENSG00000178445.10	ENST00000321612.8:ENST00000639364.1:ENST00000639954.1:ENST00000640592.1:ENST00000639840.1:ENST00000639020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	272	2	4.53238	4.798005	5.06363	0.00498128	1.87458e-4	0.046383	0.00433408
chr3	50013111	50013211	1467822	0	+	0.48	(0.45,0.485]	chr3	157166	132	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	114	2	3.20396	4.797845	6.39173	0.0377633	3.72107e-4	0.131324	0.00707906
chr14	104891800	104891896	5926144	0	+	0.604167	(0.58,1]	chr14	579999	17	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	2	116	2	3.13356	4.79784	6.46212	0.00559148	0.00211728	0.0460395	0.028892
chr5	112897299	112897398	2747148	0	-	0.393939	(0.39,0.419]	chr5	269242	41	INTRON	INTRON	REEP5	ENSG00000129625.13	ENST00000379638.9:ENST00000513339.5:ENST00000497856.6:ENST00000511865.6:ENST00000261482.8:ENST00000504247.1:ENST00000474542.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	97	2	3.82801	4.79779	5.76757	0.0204917	0.0045308	0.0979776	0.0400651
chr6	169706580	169706670	3304946	0	-	0.4	(0.39,0.419]	chr6	319985	5	INTRON	INTRON	PHF10	ENSG00000130024.15	ENST00000339209.9:ENST00000366780.8:ENST00000621772.4	protein_coding	protein_coding	protein_coding	protein_coding	1	97	2	3.82801	4.79779	5.76757	0.0204917	0.0045308	0.0979776	0.0400651
chr11	102186885	102186984	4930515	0	+	0.343434	(0.33,0.36]	chr11	475106	3	INTRON	INTRON	YAP1	ENSG00000137693.14	ENST00000282441.10:ENST00000537274.5:ENST00000345877.6:ENST00000615667.4:ENST00000526343.5:ENST00000531439.5:ENST00000629586.2:ENST00000524575.5:ENST00000529029.1	protein_coding	protein_coding	protein_coding	protein_coding	1	98	2	4.09291	4.797470000000001	5.50203	0.0265895	0.00218298	0.111433	0.0244273
chr9	135839857	135839957	4431145	0	-	0.54	(0.523,0.58]	chr9	423507	119	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.50593	4.797375000000001	5.08882	0.094303	0.00834774	0.188571	0.0598672
chr8	9772623	9772723	3754904	0	+	0.28	[0,0.29]	chr8	360887	2	SS5_PROX	SS5_PROX:INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.54061	4.79735	5.05409	0.0318802	0.0235212	0.12158	0.110758
chr7	139705142	139705242	3723197	0	-	0.52	(0.485,0.523]	chr7	357498	731	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	1	92	2	3.83677	4.797305	5.75784	0.0154142	0.00360381	0.0849828	0.0342681
chr10	24500080	24500180	4467519	0	+	0.55	(0.523,0.58]	chr10	427307	45	INTRON	INTRON	KIAA1217	ENSG00000120549.19	ENST00000376462.5:ENST00000376452.7:ENST00000430453.6:ENST00000458595.5:ENST00000376456.8:ENST00000376454.8:ENST00000438429.5:ENST00000696626.1:ENST00000307544.10:ENST00000376451.4:ENST00000396445.5:ENST00000396446.5:ENST00000460373.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.5249	4.797235	5.06957	0.0448011	0.0266135	0.140478	0.118113
chr17	44110228	44110328	6910968	0	-	0.53	(0.523,0.58]	chr17	703518	1	SS5_PROX	SS5_PROX:INTRON	HDAC5	ENSG00000108840.16	ENST00000225983.10:ENST00000682912.1:ENST00000336057.9:ENST00000586802.5:ENST00000588703.5:ENST00000587135.1:ENST00000591714.5	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.5249	4.797235	5.06957	0.0448011	0.0266135	0.140478	0.118113
chr2	11796678	11796777	722570	0	+	0.545455	(0.523,0.58]	chr2	84447	8	INTRON	INTRON	LPIN1	ENSG00000134324.12	ENST00000449576.6:ENST00000425416.6:ENST00000396097.5:ENST00000396099.5:ENST00000256720.6:ENST00000674199.1:ENST00000404113.6:ENST00000454151.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.5249	4.797235	5.06957	0.0448011	0.0266135	0.140478	0.118113
chr17	15446547	15446646	6859898	0	-	0.464646	(0.45,0.485]	chr17	695058	59	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000519354.1:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.64346	4.79701	4.95056	0.0850039	0.0127826	0.181766	0.0773423
chr2	239369803	239369903	1392410	0	-	0.48	(0.45,0.485]	chr2	148759	165	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.64346	4.79701	4.95056	0.0850039	0.0127826	0.181766	0.0773423
chr20	34563865	34563964	7547066	0	-	0.464646	(0.45,0.485]	chr20	787854	25	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.64346	4.79701	4.95056	0.0850039	0.0127826	0.181766	0.0773423
chr13	72971108	72971208	5611675	0	+	0.39	(0.36,0.39]	chr13	552587	4	SS5_PROX	SS5_PROX:INTRON	PIBF1	ENSG00000083535.16	ENST00000326291.11:ENST00000617689.4:ENST00000615625.1:ENST00000489922.5:ENST00000469712.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.39677	4.79695	5.19713	0.0462258	0.0422707	0.149195	0.143138
chr11	35251992	35252090	5026541	0	-	0.459184	(0.45,0.485]	chr11	486160	9	UTR3	UTR3:EXON_MRNA	SLC1A2	ENSG00000110436.13	ENST00000278379.9:ENST00000642769.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.77571	4.796715	4.81772	0.0719884	0.0167663	0.168159	0.0917029
chr11	59770213	59770313	4860010	0	+	0.46	(0.45,0.485]	chr11	465484	142	INTRON	INTRON	STX3	ENSG00000166900.17	ENST00000641815.1:ENST00000337979.9:ENST00000533637.5:ENST00000633708.1:ENST00000529177.5:ENST00000530498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.77571	4.796715	4.81772	0.0719884	0.0167663	0.168159	0.0917029
chr3	177111087	177111187	1960538	0	-	0.47	(0.45,0.485]	chr3	199311	2	SS3_PROX	SS3_PROX:INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	42	2	4.77571	4.796715	4.81772	0.0719884	0.0167663	0.168159	0.0917029
chr8	108206677	108206776	4038765	0	-	0.484848	(0.45,0.485]	chr8	385490	28	INTRON	INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000677524.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000677317.1:ENST00000676530.1:ENST00000677696.1:ENST00000519517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.77571	4.796715	4.81772	0.0719884	0.0167663	0.168159	0.0917029
chr9	124894961	124895060	4405594	0	-	0.484848	(0.45,0.485]	chr9	419967	41	INTRON	INTRON	GOLGA1	ENSG00000136935.14	ENST00000373555.9:ENST00000475407.5:ENST00000485337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.77571	4.796715	4.81772	0.0719884	0.0167663	0.168159	0.0917029
chr18	48602537	48602637	7057290	0	+	0.33	(0.29,0.33]	chr18	720287	618	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.51301	4.79649	5.07997	0.0885563	0.00913217	0.183874	0.0632458
chr21	33577727	33577824	7652923	0	-	0.319588	(0.29,0.33]	chr21	800732	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DONSON	ENSG00000159147.18	ENST00000439593.1:ENST00000303113.10:ENST00000453626.5:ENST00000303071.10:ENST00000457359.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.51301	4.79649	5.07997	0.0885563	0.00913217	0.183874	0.0632458
chr17	1560998	1561098	6830759	0	-	0.6	(0.58,1]	chr17	690604	4	SS5_PROX	SS5_PROX:INTRON	PITPNA	ENSG00000174238.16	ENST00000313486.12:ENST00000575288.5:ENST00000576722.5:ENST00000576761.5:ENST00000576010.6:ENST00000573231.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	90	2	3.35051	4.79648	6.24245	0.00953058	0.00334087	0.0650078	0.0368376
chr19	5814509	5814609	7195531	0	+	0.61	(0.58,1]	chr19	733105	87	INTRON	INTRON	NRTN	ENSG00000171119.3	ENST00000303212.3	protein_coding	protein_coding	protein_coding	protein_coding	1	90	2	3.35051	4.79648	6.24245	0.00953058	0.00334087	0.0650078	0.0368376
chr1	12433886	12433985	32160	0	+	0.545455	(0.523,0.58]	chr1	4249	167	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4:ENST00000011700.10:ENST00000646411.1:ENST00000543710.5:ENST00000645371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.68785	4.796425	4.905	0.0563605	0.0194172	0.154188	0.0994526
chr1	248851546	248851645	709807	0	-	0.575758	(0.523,0.58]	chr1	83007	2	INTRON	INTRON	ZNF692	ENSG00000171163.16	ENST00000463519.5:ENST00000306601.9:ENST00000366471.7:ENST00000533927.5:ENST00000476503.5:ENST00000477070.6:ENST00000412341.6:ENST00000482023.5:ENST00000451251.5:ENST00000470787.6:ENST00000462037.6:ENST00000474351.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.68785	4.796425	4.905	0.0563605	0.0194172	0.154188	0.0994526
chr4	3369479	3369578	2005131	0	+	0.535354	(0.523,0.58]	chr4	204663	261	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.68785	4.796425	4.905	0.0563605	0.0194172	0.154188	0.0994526
chr7	98242496	98242590	3647993	0	-	0.574468	(0.523,0.58]	chr7	351148	9	INTRON	INTRON	TECPR1	ENSG00000205356.10	ENST00000447648.7:ENST00000471397.1:ENST00000463648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	42	2	4.68785	4.796425	4.905	0.0563605	0.0194172	0.154188	0.0994526
chr13	75390590	75390690	5727090	0	-	0.43	(0.419,0.45]	chr13	561722	134	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	1	121	2	3.05795	4.796335	6.53472	0.0529681	4.06527e-4	0.149208	0.00755833
chr2	235512433	235512533	1062720	0	+	0.55	(0.523,0.58]	chr2	115651	172	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	101	2	3.13506	4.796279999999999	6.4575	0.0186841	0.0045605	0.0976296	0.0438198
chr3	79008108	79008208	1837587	0	-	0.4	(0.39,0.419]	chr3	188611	688	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.39622	4.796004999999999	5.19579	0.0469937	0.042449	0.149195	0.143232
chr16	8711436	8711536	6381504	0	+	0.43	(0.419,0.45]	chr16	631147	280	INTRON	INTRON	ABAT	ENSG00000183044.12	ENST00000564714.5:ENST00000268251.13:ENST00000563992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	302	2	3.741	4.79596	5.85092	0.0188635	1.90582e-5	0.0941462	8.14232e-4
chr10	47533980	47534080	4680522	0	-	0.54	(0.523,0.58]	chr10	446443	101	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	1	92	2	3.93421	4.79585	5.65749	0.0182707	0.00274644	0.0921579	0.028553
chr1	16970967	16971067	52967	0	+	0.51	(0.485,0.523]	chr1	5336	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CROCC	ENSG00000058453.17	ENST00000375541.10	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.50634	4.7958099999999995	5.08528	0.0939553	0.0086528	0.188571	0.0612699
chr12	15781321	15781420	5380414	0	-	0.494949	(0.485,0.523]	chr12	527517	7	INTRON	INTRON	EPS8	ENSG00000151491.14	ENST00000281172.10:ENST00000543523.5:ENST00000543468.5:ENST00000644374.1:ENST00000646918.1:ENST00000645775.1:ENST00000642939.1:ENST00000646828.1:ENST00000647224.1:ENST00000642278.1:ENST00000646123.1:ENST00000647087.1:ENST00000536956.5:ENST00000535752.5:ENST00000536793.5:ENST00000544064.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.50634	4.7958099999999995	5.08528	0.0939553	0.0086528	0.188571	0.0612699
chr15	55835748	55835844	6272299	0	-	0.489583	(0.485,0.523]	chr15	618219	11	INTRON	INTRON	NEDD4	ENSG00000069869.17	ENST00000435532.8:ENST00000338963.6:ENST00000508342.5:ENST00000503468.5:ENST00000508871.5:ENST00000648451.1:ENST00000506154.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.50634	4.7958099999999995	5.08528	0.0939553	0.0086528	0.188571	0.0612699
chr16	18377858	18377958	6557742	0	-	0.5	(0.485,0.523]	chr16	653466	2	SS3_PROX	SS3_PROX:INTRON	NPIPA9:PKD1P5	ENSG00000233024.7:ENSG00000254681.6	ENST00000546267.5:ENST00000532415.5	protein_coding	processed_transcript	protein_coding:transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	42	2	4.50634	4.7958099999999995	5.08528	0.0939553	0.0086528	0.188571	0.0612699
chr20	382332	382432	7414324	0	+	0.66	(0.58,1]	chr20	772276	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TRIB3	ENSG00000101255.12	ENST00000615226.4:ENST00000217233.9:ENST00000449710.5:ENST00000422053.3	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	3.9245	4.79574	5.66698	0.0102927	0.00209574	0.0684871	0.0238576
chr15	64863526	64863623	6133429	0	+	0.515464	(0.485,0.523]	chr15	603347	16	INTRON	INTRON	PLEKHO2	ENSG00000241839.10	ENST00000616065.4:ENST00000323544.5	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.52142	4.795705	5.06999	0.0445854	0.0273555	0.140478	0.119337
chr17	43544784	43544815	6739012	0	+	0.516129	(0.485,0.523]	chr17	678630	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	43	2	4.52142	4.795705	5.06999	0.0445854	0.0273555	0.140478	0.119337
chr21	37100431	37100527	7617701	0	+	0.510417	(0.485,0.523]	chr21	795748	15	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000411496.2:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.52142	4.795705	5.06999	0.0445854	0.0273555	0.140478	0.119337
chr21	43604969	43605068	7677120	0	-	0.515152	(0.485,0.523]	chr21	802562	123	INTRON	INTRON	HSF2BP	ENSG00000160207.9	ENST00000291560.7	protein_coding	protein_coding	protein_coding	protein_coding	1	92	2	3.86607	4.795685	5.7253	0.0162644	0.00334297	0.0873195	0.0327065
chr11	129191682	129191782	5143961	0	-	0.33	(0.29,0.33]	chr11	499898	2	SS5_PROX	SS5_PROX:INTRON	ARHGAP32	ENSG00000134909.19	ENST00000682385.1:ENST00000310343.13:ENST00000525234.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.67908	4.795624999999999	4.91217	0.0522244	0.0209202	0.148503	0.102931
chr3	78960821	78960921	1837114	0	-	0.31	(0.29,0.33]	chr3	188611	215	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.67908	4.795624999999999	4.91217	0.0522244	0.0209202	0.148503	0.102931
chr10	79219273	79219373	4533554	0	+	0.53	(0.523,0.58]	chr10	432457	26	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	92	2	3.62427	4.795505	5.96674	0.0109075	0.0060311	0.0707085	0.0484641
chr11	96243495	96243595	5112571	0	-	0.54	(0.523,0.58]	chr11	496566	1496	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.23973	4.795484999999999	5.35124	0.0444247	0.0295772	0.153511	0.116079
chr15	38310143	38310243	6077309	0	+	0.56	(0.523,0.58]	chr15	596955	102	INTRON	INTRON	SPRED1	ENSG00000166068.13	ENST00000299084.9:ENST00000561205.1:ENST00000561317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.23973	4.795484999999999	5.35124	0.0444247	0.0295772	0.153511	0.116079
chr18	80151263	80151363	7101518	0	+	0.44	(0.419,0.45]	chr18	723199	21	INTRON	INTRON	PARD6G-AS1	ENSG00000267270.7	ENST00000587254.5:ENST00000586421.1:ENST00000589574.1:ENST00000585422.1:ENST00000662611.1	lncRNA	lncRNA	lncRNA	lncRNA	1	99	2	3.4957	4.79544	6.09518	0.0138177	0.0102234	0.0803169	0.0678072
chr11	70659027	70659127	5060865	0	-	0.44	(0.419,0.45]	chr11	492672	42	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	43	2	4.7145	4.79524	4.87598	0.0768574	0.0256236	0.174882	0.115966
chr4	709958	710057	1993727	0	+	0.444444	(0.419,0.45]	chr4	203088	36	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.7145	4.79524	4.87598	0.0768574	0.0256236	0.174882	0.115966
chr16	87740323	87740423	6656484	0	-	0.62	(0.58,1]	chr16	665893	1	SS5_PROX	SS5_PROX:INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	101	2	3.40767	4.795085	6.1825	0.0197265	2.66047e-4	0.0958249	0.00556524
chr12	89486935	89487035	5469205	0	-	0.37	(0.36,0.39]	chr12	537710	12	INTRON	INTRON	POC1B	ENSG00000139323.14	ENST00000313546.8:ENST00000393179.8:ENST00000549035.1:ENST00000547496.5:ENST00000548715.5:ENST00000549504.1:ENST00000539190.6:ENST00000552563.1:ENST00000547274.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.30212	4.79495	5.28778	0.0494303	0.0407706	0.160725	0.135868
chr15	52777800	52777900	6267296	0	-	0.38	(0.36,0.39]	chr15	617751	196	INTRON	INTRON	ONECUT1	ENSG00000169856.9	ENST00000305901.7:ENST00000561401.3:ENST00000560699.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.30212	4.79495	5.28778	0.0494303	0.0407706	0.160725	0.135868
chrX	102864853	102864941	7927232	0	+	0.386364	(0.36,0.39]	chrX	829563	3	SS3_PROX	SS3_PROX:INTRON	LINC00630	ENSG00000223546.8	ENST00000431616.5:ENST00000440496.5:ENST00000658813.1:ENST00000656628.1:ENST00000416381.1:ENST00000658880.1	lncRNA	lncRNA	lncRNA	lncRNA	0	46	2	4.30212	4.79495	5.28778	0.0494303	0.0407706	0.160725	0.135868
chr10	28559833	28559933	4469683	0	+	0.44	(0.419,0.45]	chr10	427649	214	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	98	2	3.79893	4.794905	5.79088	0.022052	0.00509983	0.101502	0.0433857
chr1	40691371	40691470	452733	0	-	0.494949	(0.485,0.523]	chr1	54557	11	EXON_LNCRNA	EXON_LNCRNA	NFYC-AS1	ENSG00000272145.1	ENST00000606277.1	lncRNA	lncRNA	lncRNA	lncRNA	0	42	2	4.68434	4.79488	4.90542	0.0561086	0.0200045	0.154188	0.100864
chr1	43568590	43568690	107125	0	+	0.51	(0.485,0.523]	chr1	13192	143	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.68434	4.79488	4.90542	0.0561086	0.0200045	0.154188	0.100864
chr15	98870619	98870719	6195554	0	+	0.51	(0.485,0.523]	chr15	609677	460	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1:ENST00000557938.5:ENST00000560186.5:ENST00000560277.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	42	2	4.68434	4.79488	4.90542	0.0561086	0.0200045	0.154188	0.100864
chr16	81563576	81563676	6508929	0	+	0.5	(0.485,0.523]	chr16	645911	677	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.68434	4.79488	4.90542	0.0561086	0.0200045	0.154188	0.100864
chr19	4392285	4392383	7313305	0	-	0.489796	(0.485,0.523]	chr19	754735	18	INTRON	INTRON	SH3GL1	ENSG00000141985.9	ENST00000269886.7:ENST00000598564.5:ENST00000417295.6:ENST00000598219.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.68434	4.79488	4.90542	0.0561086	0.0200045	0.154188	0.100864
chr21	45445032	45445131	7630713	0	+	0.494949	(0.485,0.523]	chr21	797656	392	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.68434	4.79488	4.90542	0.0561086	0.0200045	0.154188	0.100864
chr22	29827276	29827376	7784829	0	-	0.52	(0.485,0.523]	chr22	816444	4	SS5_PROX	SS5_PROX:INTRON	ASCC2	ENSG00000100325.15	ENST00000542393.5:ENST00000307790.8:ENST00000458594.5:ENST00000397771.6:ENST00000449900.6:ENST00000431535.5:ENST00000495967.5:ENST00000412689.5:ENST00000465667.6:ENST00000495681.5:ENST00000462454.1:ENST00000453160.5:ENST00000460313.1:ENST00000454854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.68434	4.79488	4.90542	0.0561086	0.0200045	0.154188	0.100864
chr5	126778765	126778865	2526230	0	+	0.49	(0.485,0.523]	chr5	250720	5	INTRON	INTRON	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000492190.5:ENST00000395354.1:ENST00000463908.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.68434	4.79488	4.90542	0.0561086	0.0200045	0.154188	0.100864
chr7	40089026	40089123	3353742	0	+	0.505155	(0.485,0.523]	chr7	324272	3	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000646039.1:ENST00000643859.1:ENST00000643915.1:ENST00000478563.2:ENST00000644221.1:ENST00000644561.1:ENST00000645826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	42	2	4.68434	4.79488	4.90542	0.0561086	0.0200045	0.154188	0.100864
chr10	72485890	72485989	4710362	0	-	0.40404	(0.39,0.419]	chr10	448960	79	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000476605.7:ENST00000642044.1:ENST00000635239.1:ENST00000418483.6:ENST00000398763.8:ENST00000489666.2:ENST00000604238.2:ENST00000603011.5:ENST00000604529.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.64779	4.794195	4.9406	0.0658437	0.0273358	0.162385	0.119337
chr13	113046855	113046952	5656103	0	+	0.402062	(0.39,0.419]	chr13	555179	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000480321.1:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.64779	4.794195	4.9406	0.0658437	0.0273358	0.162385	0.119337
chr17	55315026	55315126	6757614	0	+	0.4	(0.39,0.419]	chr17	681719	4	SS3_PROX	SS3_PROX:INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.64779	4.794195	4.9406	0.0658437	0.0273358	0.162385	0.119337
chr10	103839213	103839313	4758497	0	-	0.5	(0.485,0.523]	chr10	454819	375	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.23628	4.793975	5.35167	0.045492200000000003	0.0294163	0.154539	0.116079
chr18	69769025	69769124	7086873	0	+	0.252525	[0,0.29]	chr18	722163	108	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10:ENST00000577609.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.54275	4.793965	5.04518	0.0681032	0.00813784	0.164448	0.0588114
chr3	171786668	171786767	1958323	0	-	0.222222	[0,0.29]	chr3	199081	154	INTRON	INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9:ENST00000498278.5:ENST00000440204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.54275	4.793965	5.04518	0.0681032	0.00813784	0.164448	0.0588114
chr7	45889774	45889865	3370031	0	+	0.527473	(0.523,0.58]	chr7	325160	4	INTRON	INTRON	IGFBP1	ENSG00000146678.10	ENST00000457280.5:ENST00000275525.8:ENST00000468955.1	protein_coding	protein_coding	protein_coding	protein_coding	3	216	2	3.43407	4.79387	6.15367	0.00811699	5.76607e-4	0.0602911	0.00963379
chr22	19422324	19422424	7763479	0	-	0.53	(0.523,0.58]	chr22	813787	112	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	96	2	4.2352	4.79322	5.35124	0.0295772	0.00122149	0.116079	0.0163228
chr1	1028135	1028235	996	0	+	0.65	(0.58,1]	chr1	166	53	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.58025	4.79305	5.00585	0.0323732	0.0172566	0.121593	0.0923809
chr11	70809170	70809269	5062375	0	-	0.626263	(0.58,1]	chr11	492713	16	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.58025	4.79305	5.00585	0.0323732	0.0172566	0.121593	0.0923809
chr19	1290082	1290181	7186905	0	+	0.707071	(0.58,1]	chr19	731132	34	INTRON	INTRON	EFNA2	ENSG00000099617.4	ENST00000215368.4	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.58025	4.79305	5.00585	0.0323732	0.0172566	0.121593	0.0923809
chr22	50236814	50236914	7827229	0	-	0.67	(0.58,1]	chr22	821200	29	INTRON	INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.58025	4.79305	5.00585	0.0323732	0.0172566	0.121593	0.0923809
chr6	3145956	3146055	2828598	0	+	0.646465	(0.58,1]	chr6	277604	51	INTRON	INTRON	BPHL	ENSG00000137274.13	ENST00000434640.5:ENST00000430655.6:ENST00000424847.6:ENST00000433912.5:ENST00000380379.10:ENST00000490918.5:ENST00000380375.4:ENST00000488487.2:ENST00000423798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.58025	4.79305	5.00585	0.0323732	0.0172566	0.121593	0.0923809
chr7	157340956	157341056	3521749	0	+	0.62	(0.58,1]	chr7	340131	5	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000439402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.58025	4.79305	5.00585	0.0323732	0.0172566	0.121593	0.0923809
chr9	129495190	129495290	4250726	0	+	0.63	(0.58,1]	chr9	404714	12	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	41	2	4.58025	4.79305	5.00585	0.0323732	0.0172566	0.121593	0.0923809
chr3	188462578	188462678	1654888	0	+	0.34	(0.33,0.36]	chr3	173774	559	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000618621.4:ENST00000640853.1:ENST00000494233.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.57958	4.793	5.00642	0.0542065	0.0288057	0.151733	0.123764
chr8	124661114	124661213	4064268	0	-	0.343434	(0.33,0.36]	chr8	387128	418	INTRON	INTRON	MTSS1	ENSG00000170873.19	ENST00000518547.6:ENST00000378017.7:ENST00000325064.9:ENST00000522162.1:ENST00000529463.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.57958	4.793	5.00642	0.0542065	0.0288057	0.151733	0.123764
chr17	60645404	60645503	6770739	0	+	0.363636	(0.36,0.39]	chr17	683045	111	INTRON	INTRON	PPM1D	ENSG00000170836.13	ENST00000305921.8:ENST00000693102.1:ENST00000685212.1:ENST00000693196.1:ENST00000392995.7:ENST00000688505.1:ENST00000629650.3:ENST00000687355.1:ENST00000686064.1:ENST00000689445.1:ENST00000692386.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.48559	4.7929949999999995	5.1004	0.0526991	0.036329	0.14912	0.139793
chr19	12618727	12618826	7211504	0	+	0.383838	(0.36,0.39]	chr19	736132	60	INTRON	INTRON	ZNF791	ENSG00000173875.14	ENST00000446165.2:ENST00000343325.9:ENST00000598225.5:ENST00000597691.5:ENST00000600752.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	44	2	4.48559	4.7929949999999995	5.1004	0.0526991	0.036329	0.14912	0.139793
chr16	85442413	85442513	6517495	0	+	0.44	(0.419,0.45]	chr16	646391	831	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	177	2	3.37447	4.79299	6.21151	0.017196	9.41863e-4	0.0896906	0.0135546
chr17	19665447	19665547	6696193	0	+	0.49	(0.485,0.523]	chr17	672343	4	SS5_PROX	SS5_PROX:INTRON	ALDH3A2	ENSG00000072210.19	ENST00000581518.6:ENST00000673136.1:ENST00000672465.1:ENST00000631291.2:ENST00000672357.1:ENST00000579855.5:ENST00000176643.11:ENST00000339618.8:ENST00000672564.1:ENST00000671878.1:ENST00000582991.6:ENST00000395575.7:ENST00000672487.1:ENST00000630662.2:ENST00000472059.6:ENST00000672567.1:ENST00000672709.1:ENST00000672059.1:ENST00000673472.1:ENST00000672608.1:ENST00000476965.5:ENST00000574078.3:ENST00000673064.1:ENST00000673516.1:ENST00000672591.1:ENST00000571163.2:ENST00000573947.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	111	2	3.30265	4.7929200000000005	6.28319	0.0306642	4.20832e-4	0.119264	0.00773187
chr11	70789748	70789848	5062179	0	-	0.55	(0.523,0.58]	chr11	492701	719	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	97	2	3.27377	4.79274	6.31171	0.0137592	0.00594629	0.0814923	0.0506158
chr10	72809962	72810062	4507435	0	+	0.48	(0.45,0.485]	chr10	431210	489	INTRON	INTRON	MCU	ENSG00000156026.15	ENST00000373053.8:ENST00000357157.10:ENST00000604679.5:ENST00000604372.5:ENST00000603649.5:ENST00000605597.5:ENST00000536019.5:ENST00000604152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.5725	4.792585	5.01267	0.0926859	0.011221	0.188571	0.071709
chr18	13262644	13262744	7023187	0	+	0.68	(0.58,1]	chr18	717514	433	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000590371.5:ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000590115.1:ENST00000677055.1:ENST00000399848.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	40	2	4.6951	4.792585	4.89007	0.0521567	0.00872525	0.148503	0.0612699
chr2	10303780	10303861	718433	0	+	0.654321	(0.58,1]	chr2	84015	2	UTR5	UTR5:EXON_MRNA:INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.6951	4.792585	4.89007	0.0521567	0.00872525	0.148503	0.0612699
chr8	143488446	143488546	4096477	0	-	0.61	(0.58,1]	chr8	389272	31	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6:ENST00000528401.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.6951	4.792585	4.89007	0.0521567	0.00872525	0.148503	0.0612699
chr9	120875880	120875972	4387844	0	-	0.630435	(0.58,1]	chr9	418716	1	UTR5	UTR5:EXON_MRNA:INTRON	PHF19	ENSG00000119403.15	ENST00000373896.8:ENST00000616568.5:ENST00000436309.5:ENST00000312189.10:ENST00000456291.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.6951	4.792585	4.89007	0.0521567	0.00872525	0.148503	0.0612699
chr17	80224736	80224836	6806866	0	+	0.57	(0.523,0.58]	chr17	687275	10	INTRON	INTRON	SLC26A11	ENSG00000181045.15	ENST00000361193.8:ENST00000546047.6:ENST00000411502.7:ENST00000571888.5:ENST00000576126.5:ENST00000572725.5:ENST00000571564.5:ENST00000571176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	111	2	3.37594	4.7921700000000005	6.2084	0.0272868	4.95211e-4	0.112327	0.00865935
chr11	18012201	18012301	5015381	0	-	0.41	(0.39,0.419]	chr11	484705	3	SS5_PROX	SS5_PROX:INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528200.5:ENST00000532265.5:ENST00000529728.5:ENST00000530613.5:ENST00000532389.5:ENST00000530925.5:ENST00000533328.5:ENST00000532212.5:ENST00000524716.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.48504	4.79205	5.09906	0.0535378	0.0364893	0.150319	0.139793
chr11	117069746	117069846	5133963	0	-	0.4	(0.39,0.419]	chr11	498442	338	INTRON	INTRON	SIK3	ENSG00000160584.17	ENST00000445177.6:ENST00000375300.6:ENST00000446921.6:ENST00000415541.5:ENST00000485363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.48504	4.79205	5.09906	0.0535378	0.0364893	0.150319	0.139793
chr6	53540600	53540700	3150834	0	-	0.39	(0.36,0.39]	chr6	307405	168	INTRON	INTRON	GCLC	ENSG00000001084.13	ENST00000650454.1:ENST00000616923.5:ENST00000643939.1:ENST00000513939.6:ENST00000504525.1:ENST00000514004.5:ENST00000505197.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	130	2	3.40677	4.79205	6.17733	0.0104543	0.00434251	0.0688771	0.0390338
chr10	46807800	46807899	4484761	0	+	0.323232	(0.29,0.33]	chr10	428921	55	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000688259.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	94	2	4.06424	4.791980000000001	5.51972	0.0208628	0.0020563	0.0991037	0.0235218
chr3	88109026	88109125	1512521	0	+	0.454545	(0.45,0.485]	chr3	161123	223	INTRON	INTRON	ZNF654	ENSG00000175105.8	ENST00000636215.2:ENST00000473136.4:ENST00000623596.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.74641	4.791980000000001	4.83755	0.06646	0.0193126	0.162385	0.0994526
chr20	18140134	18140233	7441535	0	+	0.555556	(0.523,0.58]	chr20	774399	12	INTRON	INTRON	KAT14:PET117	ENSG00000149474.15:ENSG00000232838.4	ENST00000677174.1:ENST00000677573.1:ENST00000377681.8:ENST00000676992.1:ENST00000678777.1:ENST00000688188.1:ENST00000432901.4:ENST00000677266.1:ENST00000677610.1:ENST00000676935.1:ENST00000435364.8:ENST00000464792.2:ENST00000678772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	92	2	3.58927	4.79179	5.99431	0.0104033	0.00656975	0.0686837	0.0510026
chr20	381849	381932	7414318	0	+	0.710843	(0.58,1]	chr20	772273	4	SS5_PROX	SS5_PROX:INTRON	TRIB3	ENSG00000101255.12	ENST00000615226.4:ENST00000217233.9:ENST00000449710.5:ENST00000422053.3	protein_coding	protein_coding	protein_coding	protein_coding	6	190	2	2.91273	4.791595	6.67046	0.00236285	0.00135763	0.0259199	0.0224546
chr22	28918580	28918680	7705627	0	+	0.43	(0.419,0.45]	chr22	806321	7	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7:ENST00000402174.5	protein_coding	protein_coding	protein_coding	protein_coding	4	437	2	4.53523	4.791320000000001	5.04741	0.00197953	1.17784e-4	0.0279359	0.00310645
chr17	80023402	80023502	6982150	0	-	0.66	(0.58,1]	chr17	713081	94	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.62403	4.791085000000001	4.95814	0.0578275	0.0074469	0.154343	0.0553519
chr21	45453722	45453822	7630800	0	+	0.68	(0.58,1]	chr21	797656	479	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.62403	4.791085000000001	4.95814	0.0578275	0.0074469	0.154343	0.0553519
chr21	45454222	45454322	7630805	0	+	0.65	(0.58,1]	chr21	797656	484	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.62403	4.791085000000001	4.95814	0.0578275	0.0074469	0.154343	0.0553519
chr5	651791	651891	2378800	0	+	0.65	(0.58,1]	chr5	237646	35	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.62403	4.791085000000001	4.95814	0.0578275	0.0074469	0.154343	0.0553519
chr9	93618969	93619069	4184079	0	+	0.59	(0.58,1]	chr9	397705	417	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.62403	4.791085000000001	4.95814	0.0578275	0.0074469	0.154343	0.0553519
chr9	134366081	134366181	4261084	0	+	0.65	(0.58,1]	chr9	406311	391	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.62403	4.791085000000001	4.95814	0.0578275	0.0074469	0.154343	0.0553519
chrX	130222374	130222473	8102197	0	-	0.353535	(0.33,0.36]	chrX	844940	15	INTRON	INTRON	ZNF280C	ENSG00000056277.16	ENST00000370978.9:ENST00000447817.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.70894	4.79092	4.8729	0.0798152	0.0164782	0.176933	0.091341
chr6	158039638	158039738	3059894	0	+	0.56	(0.523,0.58]	chr6	297390	56	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	123	2	3.20552	4.790760000000001	6.376	0.00584144	0.00529293	0.047841	0.0474117
chr10	103698015	103698114	4757080	0	-	0.606061	(0.58,1]	chr10	454791	45	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.76284	4.79073	4.81862	0.0471737	0.0102696	0.143232	0.0678072
chr11	70876817	70876917	5063055	0	-	0.61	(0.58,1]	chr11	492728	38	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000645599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.76284	4.79073	4.81862	0.0471737	0.0102696	0.143232	0.0678072
chr16	8832146	8832246	6382715	0	+	0.59	(0.58,1]	chr16	631333	30	INTRON	INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000683435.1:ENST00000683094.1:ENST00000566604.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000567697.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.76284	4.79073	4.81862	0.0471737	0.0102696	0.143232	0.0678072
chr19	1288494	1288594	7186889	0	+	0.65	(0.58,1]	chr19	731132	18	INTRON	INTRON	EFNA2	ENSG00000099617.4	ENST00000215368.4	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.76284	4.79073	4.81862	0.0471737	0.0102696	0.143232	0.0678072
chr9	134413782	134413881	4261571	0	+	0.676768	(0.58,1]	chr9	406352	43	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000481739.2:ENST00000356384.4:ENST00000672570.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.76284	4.79073	4.81862	0.0471737	0.0102696	0.143232	0.0678072
chr1	15052211	15052310	44934	0	+	0.474747	(0.45,0.485]	chr1	4408	77	INTRON	INTRON	KAZN	ENSG00000189337.17	ENST00000636203.1:ENST00000376030.7:ENST00000491547.1:ENST00000503743.5:ENST00000361144.9:ENST00000400798.6:ENST00000376028.8:ENST00000400797.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.41963	4.790559999999999	5.16149	0.0427653	0.0355247	0.137983	0.13762
chr1	54601068	54601168	131706	0	+	0.46	(0.45,0.485]	chr1	16211	4	SS3_PROX	SS3_PROX:INTRON	ACOT11	ENSG00000162390.18	ENST00000481208.5:ENST00000371316.3:ENST00000343744.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.41963	4.790559999999999	5.16149	0.0427653	0.0355247	0.137983	0.13762
chr7	47357509	47357608	3587366	0	-	0.474747	(0.45,0.485]	chr7	346030	108	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.41963	4.790559999999999	5.16149	0.0427653	0.0355247	0.137983	0.13762
chr9	69160933	69161033	4164657	0	+	0.47	(0.45,0.485]	chr9	395769	88	INTRON	INTRON	TJP2	ENSG00000119139.21	ENST00000643713.1:ENST00000606364.5:ENST00000648087.1:ENST00000423935.6:ENST00000647986.1:ENST00000636438.1:ENST00000377259.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.41963	4.790559999999999	5.16149	0.0427653	0.0355247	0.137983	0.13762
chr7	102047141	102047241	3436286	0	+	0.48	(0.45,0.485]	chr7	332534	186	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	95	2	4.03897	4.790414999999999	5.54186	0.0243502	0.00230814	0.106588	0.0255029
chr17	83025180	83025280	6990799	0	-	0.59	(0.58,1]	chr17	715120	103	INTRON	INTRON	B3GNTL1	ENSG00000175711.9	ENST00000320865.4:ENST00000576599.5:ENST00000570947.5:ENST00000571954.5:ENST00000573629.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	85	2	3.9863	4.790385000000001	5.59447	0.0117666	0.0017591	0.0737098	0.0211077
chr7	76995636	76995735	3398756	0	+	0.636364	(0.58,1]	chr7	328286	49	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	45	2	4.18518	4.7903199999999995	5.39546	0.0374658	0.0168207	0.139793	0.0884836
chr6	138499132	138499232	3274135	0	-	0.42	(0.419,0.45]	chr6	316921	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NHSL1	ENSG00000135540.12	ENST00000427025.6:ENST00000343505.10:ENST00000342260.9:ENST00000426841.6:ENST00000491526.6:ENST00000533765.1:ENST00000479393.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	106	2	4.30181	4.790245	5.27868	0.0457732	0.00146956	0.142336	0.0185589
chr4	716236	716336	1993790	0	+	0.61	(0.58,1]	chr4	203088	99	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	93	2	3.20215	4.790185	6.37822	0.0136092	0.00252415	0.0811697	0.031696
chr8	38767196	38767296	3802227	0	+	0.51	(0.485,0.523]	chr8	365828	94	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	111	2	3.40249	4.790095	6.1777	0.0260491	5.64449e-4	0.109673	0.00950156
chr14	24435359	24435456	5759961	0	+	0.474227	(0.45,0.485]	chr14	565628	20	INTRON	INTRON	KHNYN	ENSG00000100441.10	ENST00000251343.9:ENST00000556842.5:ENST00000553935.6:ENST00000554268.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.32491	4.790005	5.2551	0.0418883	0.0373953	0.149021	0.130656
chr17	29084610	29084709	6875946	0	-	0.474747	(0.45,0.485]	chr17	697789	18	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000529578.5:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000546105.5:ENST00000527312.5:ENST00000531438.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	45	2	4.32491	4.790005	5.2551	0.0418883	0.0373953	0.149021	0.130656
chr2	43455448	43455548	1133871	0	-	0.47	(0.45,0.485]	chr2	123988	248	INTRON	INTRON	THADA	ENSG00000115970.19	ENST00000405975.7:ENST00000407351.5:ENST00000398653.5:ENST00000405006.8:ENST00000408045.7:ENST00000402796.5:ENST00000485353.5:ENST00000469323.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	111	2	4.62613	4.7899650000000005	4.9538	0.0569772	4.64649e-4	0.154343	0.00826915
chr16	81483270	81483370	6508124	0	+	0.48	(0.45,0.485]	chr16	645906	374	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	1	116	2	3.62011	4.789525	5.95894	0.0192961	0.00119342	0.0954446	0.016037
chr7	23415178	23415274	3552653	0	-	0.604167	(0.58,1]	chr7	343216	21	EXON_MRNA	EXON_MRNA:INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	172	2	2.82254	4.789295	6.75605	0.0037822	0.00112759	0.0354408	0.0202727
chr13	113634702	113634802	5659356	0	+	0.49	(0.485,0.523]	chr13	555810	1	SS5_PROX	SS5_PROX:INTRON	TFDP1	ENSG00000198176.13	ENST00000375370.10:ENST00000544902.5:ENST00000408980.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	97	2	4.26852	4.788444999999999	5.30837	0.0314138	0.00114195	0.12069	0.0156089
chr1	45096331	45096431	463480	0	-	0.43	(0.419,0.45]	chr1	55667	77	INTRON	INTRON	ZSWIM5	ENSG00000162415.7	ENST00000359600.6:ENST00000464588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.38804	4.7880400000000005	5.18804	0.051668	0.0451818	0.154539	0.148503
chr1	245814915	245815014	698921	0	-	0.434343	(0.419,0.45]	chr1	82358	1	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000493441.5:ENST00000488153.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	45	2	4.38804	4.7880400000000005	5.18804	0.051668	0.0451818	0.154539	0.148503
chr10	18558167	18558266	4642310	0	-	0.434343	(0.419,0.45]	chr10	443321	58	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.38804	4.7880400000000005	5.18804	0.051668	0.0451818	0.154539	0.148503
chr2	138529383	138529483	904161	0	+	0.37	(0.36,0.39]	chr2	101929	269	INTRON	INTRON	SPOPL	ENSG00000144228.9	ENST00000280098.9:ENST00000430968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	96	2	3.74547	4.788005	5.83054	0.0182399	0.00550271	0.0921579	0.0454065
chr10	76353346	76353446	4529710	0	+	0.41	(0.39,0.419]	chr10	432328	64	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593699.5:ENST00000372499.5:ENST00000496424.2:ENST00000598708.1:ENST00000488655.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	100	2	4.12373	4.787985	5.45224	0.032783	0.00217716	0.122593	0.0243974
chr9	114193108	114193207	4226081	0	+	0.585859	(0.58,1]	chr9	400764	97	INTRON	INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8:ENST00000451716.5:ENST00000494090.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	136	2	3.30999	4.787985	6.26598	0.00318361	0.00180937	0.0360488	0.02155
chr8	43100368	43100468	3811234	0	+	0.54	(0.523,0.58]	chr8	367069	1	SS5_PROX	SS5_PROX:INTRON	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000331373.10:ENST00000674727.1:ENST00000518991.6:ENST00000676163.1:ENST00000675129.1:ENST00000675791.1:ENST00000675013.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	112	2	3.53814	4.78785	6.03756	0.020829	7.92905e-4	0.0990379	0.0120621
chr17	340453	340552	6821693	0	-	0.707071	(0.58,1]	chr17	689625	9	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000577079.5:ENST00000573780.5:ENST00000575130.5:ENST00000575634.5	protein_coding	protein_coding	protein_coding	protein_coding	1	100	2	2.97713	4.78763	6.59813	0.0226795	0.00158605	0.108193	0.0245893
chr2	240619828	240619927	1075141	0	+	0.646465	(0.58,1]	chr2	116654	4	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	1	100	2	2.97713	4.78763	6.59813	0.0226795	0.00158605	0.108193	0.0245893
chr12	4528870	4528969	5361858	0	-	0.383838	(0.36,0.39]	chr12	524975	29	INTRON	INTRON	C12orf4	ENSG00000047621.12	ENST00000261250.8:ENST00000545746.5:ENST00000541014.5:ENST00000544697.1:ENST00000535887.1:ENST00000542080.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	96	2	3.77418	4.78712	5.80006	0.0191255	0.00513898	0.0952349	0.0435696
chr16	29272013	29272113	6433557	0	+	0.58	(0.523,0.58]	chr16	636745	199	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	1	94	2	3.4003	4.787065	6.17383	0.0103016	0.00760615	0.0678983	0.0579698
chr8	38770892	38770992	3802264	0	+	0.59	(0.58,1]	chr8	365828	131	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	212	2	4.62921	4.78706	4.94491	0.00163826	9.06847e-5	0.0250898	0.00254217
chr1	228142528	228142628	358009	0	+	0.63	(0.58,1]	chr1	40401	3	INTRON	INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	108	2	3.93773	4.786580000000001	5.63543	0.00708574	0.00131165	0.0558168	0.0171898
chr1	29237815	29237915	78386	0	+	0.88	(0.58,1]	chr1	8914	7	INTRON	INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	4.01623	4.786519999999999	5.55681	0.0126042	0.00161478	0.0761905	0.0199131
chr6	131586631	131586731	3262327	0	-	0.55	(0.523,0.58]	chr6	315611	120	INTRON	INTRON	MED23	ENSG00000112282.18	ENST00000354577.8	protein_coding	protein_coding	protein_coding	protein_coding	1	100	2	3.13506	4.7863050000000005	6.43755	0.0186841	0.00473049	0.0976296	0.0449253
chr22	29828592	29828690	7784843	0	-	0.55102	(0.523,0.58]	chr22	816450	6	INTRON	INTRON	ASCC2	ENSG00000100325.15	ENST00000542393.5:ENST00000307790.8:ENST00000458594.5:ENST00000397771.6:ENST00000449900.6:ENST00000431535.5:ENST00000495967.5:ENST00000412689.5:ENST00000465667.6:ENST00000495681.5:ENST00000462454.1:ENST00000453160.5:ENST00000460313.1:ENST00000454854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	91	2	3.69181	4.786265	5.88072	0.0126258	0.00510333	0.0761905	0.0433857
chr3	66324057	66324157	1497494	0	+	0.44	(0.419,0.45]	chr3	160479	182	INTRON	INTRON	SLC25A26	ENSG00000144741.19	ENST00000676754.1:ENST00000686511.1:ENST00000690634.1:ENST00000689520.1:ENST00000686445.1:ENST00000691582.1:ENST00000691166.1:ENST00000691461.1:ENST00000354883.11:ENST00000693385.1:ENST00000688696.1:ENST00000691525.1:ENST00000690560.1:ENST00000336733.10:ENST00000464350.6:ENST00000691603.1:ENST00000483224.5:ENST00000413054.5:ENST00000484768.1:ENST00000685460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.63955	4.786225	4.9329	0.0716557	0.0293406	0.168159	0.125102
chr7	143384545	143384645	3510750	0	+	0.42	(0.419,0.45]	chr7	338485	3	SS5_PROX	SS5_PROX:INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.63955	4.786225	4.9329	0.0716557	0.0293406	0.168159	0.125102
chr16	1507500	1507600	6370019	0	+	0.72	(0.58,1]	chr16	628647	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TELO2	ENSG00000100726.15	ENST00000262319.11:ENST00000568240.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.54927	4.786205	5.02314	0.0643046	0.00638322	0.161669	0.0501889
chr17	82801792	82801891	6818877	0	+	0.686869	(0.58,1]	chr17	689288	4	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000682107.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.54927	4.786205	5.02314	0.0643046	0.00638322	0.161669	0.0501889
chr19	16370050	16370149	7343630	0	-	0.616162	(0.58,1]	chr19	760668	77	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.54927	4.786205	5.02314	0.0643046	0.00638322	0.161669	0.0501889
chr7	143387261	143387361	3510778	0	+	0.59	(0.58,1]	chr7	338487	1	SS3_PROX	SS3_PROX:INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.54927	4.786205	5.02314	0.0643046	0.00638322	0.161669	0.0501889
chr8	18997681	18997780	3951977	0	-	0.59596	(0.58,1]	chr8	377308	574	INTRON	INTRON	PSD3	ENSG00000156011.18	ENST00000327040.13:ENST00000440756.4:ENST00000521475.1:ENST00000521841.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.54927	4.786205	5.02314	0.0643046	0.00638322	0.161669	0.0501889
chr9	128808271	128808369	4248034	0	+	0.602041	(0.58,1]	chr9	404080	5	UTR3	UTR3:EXON_MRNA	TBC1D13	ENSG00000107021.16	ENST00000372648.10:ENST00000223865.8	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.54927	4.786205	5.02314	0.0643046	0.00638322	0.161669	0.0501889
chr9	129493995	129494095	4250714	0	+	0.63	(0.58,1]	chr9	404713	4	SS5_PROX	SS5_PROX:INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	40	2	4.54927	4.786205	5.02314	0.0643046	0.00638322	0.161669	0.0501889
chr16	84746571	84746670	6514297	0	+	0.474747	(0.45,0.485]	chr16	646296	5	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000563892.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	155	2	2.70667	4.7860949999999995	6.86552	0.0431872	9.58344e-5	0.138441	0.00264329
chr2	63000763	63000863	816934	0	+	0.37	(0.36,0.39]	chr2	92205	36	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000496857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	97	2	3.49254	4.785880000000001	6.07922	0.0122748	0.00987589	0.0755611	0.0664239
chr6	2082099	2082199	3083700	0	-	0.39	(0.36,0.39]	chr6	299503	388	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5	protein_coding	protein_coding	protein_coding	protein_coding	2	130	2	3.46668	4.78553	6.10438	0.0117824	0.00373898	0.073726	0.0352008
chr13	113506062	113506161	5658337	0	+	0.585859	(0.58,1]	chr13	555703	1	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000462877.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.74346	4.785495	4.82753	0.0427798	0.0121457	0.13762	0.0754623
chr15	90034526	90034626	6183890	0	+	0.61	(0.58,1]	chr15	608320	273	INTRON	INTRON	ZNF710	ENSG00000140548.10	ENST00000268154.9:ENST00000559419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.74346	4.785495	4.82753	0.0427798	0.0121457	0.13762	0.0754623
chr2	3277202	3277302	1080878	0	-	0.71	(0.58,1]	chr2	117629	24	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.74346	4.785495	4.82753	0.0427798	0.0121457	0.13762	0.0754623
chr21	45479601	45479701	7631070	0	+	0.59	(0.58,1]	chr21	797701	3	SS3_PROX	SS3_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.74346	4.785495	4.82753	0.0427798	0.0121457	0.13762	0.0754623
chr7	139702445	139702545	3723170	0	-	0.6	(0.58,1]	chr7	357498	704	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.74346	4.785495	4.82753	0.0427798	0.0121457	0.13762	0.0754623
chr6	154748012	154748112	3044258	0	+	0.31	(0.29,0.33]	chr6	296626	56	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	92	2	3.90593	4.78534	5.66475	0.0164475	0.00310829	0.0877632	0.0311915
chr1	822609	822709	379736	0	-	0.53	(0.523,0.58]	chr1	42663	441	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000634337.2:ENST00000635509.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	42	2	4.60868	4.785325	4.96197	0.0521137	0.0226775	0.148503	0.108193
chr14	23521302	23521401	5757167	0	+	0.545455	(0.523,0.58]	chr14	564963	65	INTRON	INTRON	ZFHX2-AS1	ENSG00000157306.14	ENST00000556354.5:ENST00000553985.1:ENST00000554403.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	42	2	4.60868	4.785325	4.96197	0.0521137	0.0226775	0.148503	0.108193
chr17	9414018	9414118	6853391	0	-	0.53	(0.523,0.58]	chr17	694499	350	INTRON	INTRON	STX8	ENSG00000170310.15	ENST00000306357.9:ENST00000575858.5:ENST00000570583.5:ENST00000574431.5:ENST00000575294.6:ENST00000574775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.60868	4.785325	4.96197	0.0521137	0.0226775	0.148503	0.108193
chr3	9769140	9769235	1682430	0	-	0.578947	(0.523,0.58]	chr3	175743	10	INTRON	INTRON	CAMK1	ENSG00000134072.11	ENST00000256460.8:ENST00000397277.6:ENST00000411972.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.60868	4.785325	4.96197	0.0521137	0.0226775	0.148503	0.108193
chr17	7112632	7112731	6847760	0	-	0.636364	(0.58,1]	chr17	693423	34	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	818	2	4.51418	4.785209999999999	5.05624	1.27158e-4	9.15416e-6	0.00624469	4.8209e-4
chr14	37200770	37200870	5783090	0	+	0.36	(0.33,0.36]	chr14	566826	21	INTRON	INTRON	MIPOL1	ENSG00000151338.20	ENST00000694961.1:ENST00000396294.6:ENST00000537471.6:ENST00000556615.5:ENST00000554114.2:ENST00000695502.1:ENST00000695405.1:ENST00000695503.1:ENST00000684589.1:ENST00000327441.11:ENST00000694962.1:ENST00000539062.6:ENST00000554930.5:ENST00000556451.5:ENST00000694963.1:ENST00000555870.5:ENST00000694964.1:ENST00000556753.5:ENST00000694965.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.57035	4.7851	4.99985	0.0945416	0.0127452	0.188571	0.0773423
chr5	109105318	109105418	2502455	0	+	0.34	(0.33,0.36]	chr5	248802	44	INTRON	INTRON	FER	ENSG00000151422.14	ENST00000281092.9:ENST00000504143.6:ENST00000438717.6:ENST00000618353.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.57035	4.7851	4.99985	0.0945416	0.0127452	0.188571	0.0773423
chr3	9681107	9681205	1403290	0	+	0.479592	(0.45,0.485]	chr3	150318	27	INTRON	INTRON	MTMR14	ENSG00000163719.20	ENST00000353332.9:ENST00000420925.5:ENST00000447144.5:ENST00000296003.9:ENST00000430020.5:ENST00000351233.9:ENST00000416864.5:ENST00000414996.1:ENST00000431250.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.49786	4.78503	5.0722	0.101311	0.00988295	0.196131	0.0664239
chr6	41508791	41508891	3131816	0	-	0.47	(0.45,0.485]	chr6	305424	135	INTRON	INTRON	FOXP4-AS1	ENSG00000234753.6	ENST00000691406.1:ENST00000440194.1	lncRNA	lncRNA	lncRNA	lncRNA	0	42	2	4.49786	4.78503	5.0722	0.101311	0.00988295	0.196131	0.0664239
chr9	114192909	114193009	4226079	0	+	0.48	(0.45,0.485]	chr9	400764	95	INTRON	INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8:ENST00000451716.5:ENST00000494090.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.49786	4.78503	5.0722	0.101311	0.00988295	0.196131	0.0664239
chr7	91941647	91941746	3412369	0	+	0.464646	(0.45,0.485]	chr7	329504	1	INTRON	INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000394564.5:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.50852	4.78495	5.06138	0.0492008	0.0302873	0.146142	0.126768
chr9	133850998	133851098	4428908	0	-	0.48	(0.45,0.485]	chr9	423304	163	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.50852	4.78495	5.06138	0.0492008	0.0302873	0.146142	0.126768
chr9	134350013	134350113	4260923	0	+	0.62	(0.58,1]	chr9	406311	230	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	119	2	2.93515	4.78495	6.63475	0.00938921	0.00146621	0.064735	0.023492
chr4	2825696	2825785	2000375	0	+	0.606742	(0.58,1]	chr4	203974	1	INTRON	INTRON	SH3BP2	ENSG00000087266.17	ENST00000503393.8:ENST00000504294.5:ENST00000508385.5:ENST00000511663.5:ENST00000512014.5:ENST00000435136.8:ENST00000511185.5:ENST00000511747.6:ENST00000356331.9:ENST00000515737.5:ENST00000515183.5:ENST00000505941.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	141	2	3.58663	4.784925	5.98322	0.00562007	7.80685e-4	0.0493906	0.01194
chr10	117342300	117342400	4770525	0	-	0.4	(0.39,0.419]	chr10	455983	8	INTRON	INTRON	PDZD8	ENSG00000165650.12	ENST00000334464.7:ENST00000489491.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	97	2	3.93346	4.784655	5.63585	0.025023	0.00350435	0.10758	0.0339021
chr3	172397063	172397163	1631075	0	+	0.33	(0.29,0.33]	chr3	170701	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000336824.8:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.59993	4.784535	4.96914	0.0481918	0.0243639	0.144601	0.113231
chr11	64145260	64145359	5049030	0	-	0.616162	(0.58,1]	chr11	490257	185	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	135	2	3.12738	4.784485	6.44159	0.00308082	0.00221069	0.0310143	0.0295736
chr12	49374982	49375081	5225243	0	+	0.414141	(0.39,0.419]	chr12	507159	33	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549538.5:ENST00000549412.5:ENST00000550643.5:ENST00000548654.5:ENST00000548710.5:ENST00000549179.5:ENST00000548377.5:ENST00000549298.5:ENST00000552918.6:ENST00000549375.5:ENST00000553127.5:ENST00000321898.10:ENST00000551540.5:ENST00000548777.5:ENST00000552171.1:ENST00000547865.5:ENST00000548388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	97	2	3.49059	4.784225	6.07786	0.012565	0.00994485	0.0761905	0.0666719
chr11	46420043	46420143	5031082	0	-	0.47	(0.45,0.485]	chr11	486630	16	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.67139	4.78412	4.89685	0.0614781	0.0223378	0.158506	0.108193
chr11	68332871	68332970	4882286	0	+	0.454545	(0.45,0.485]	chr11	470542	197	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.67139	4.78412	4.89685	0.0614781	0.0223378	0.158506	0.108193
chr13	20496193	20496293	5662802	0	-	0.47	(0.45,0.485]	chr13	556208	63	INTRON	INTRON	CRYL1	ENSG00000165475.15	ENST00000643035.1:ENST00000644593.1:ENST00000298248.12:ENST00000644872.1:ENST00000382812.5:ENST00000643750.1:ENST00000644153.1:ENST00000643887.1:ENST00000644167.1:ENST00000646414.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.67139	4.78412	4.89685	0.0614781	0.0223378	0.158506	0.108193
chr16	305926	306024	6529566	0	-	0.438776	(0.419,0.45]	chr16	648369	11	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	44	2	4.47684	4.784085	5.09133	0.0586308	0.0389508	0.155565	0.142578
chr10	131918687	131918786	4616203	0	+	0.545455	(0.523,0.58]	chr10	441069	57	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	111	2	3.47085	4.783815	6.09678	0.0233215	6.74499e-4	0.103725	0.0108081
chr2	38326106	38326206	1123821	0	-	0.4	(0.39,0.419]	chr2	123019	67	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	96	2	3.6226	4.78381	5.94502	0.0155393	0.0073612	0.0849828	0.055174
chr11	70947009	70947108	5063761	0	-	0.50505	(0.485,0.523]	chr11	492740	501	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000618363.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	42	2	4.60518	4.783785	4.96239	0.0518747	0.0233371	0.148503	0.110098
chr2	36597182	36597279	1118773	0	-	0.505155	(0.485,0.523]	chr2	122313	28	INTRON	INTRON	FEZ2	ENSG00000171055.15	ENST00000379245.8:ENST00000405912.8:ENST00000451623.5:ENST00000357996.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.60518	4.783785	4.96239	0.0518747	0.0233371	0.148503	0.110098
chr5	80251185	80251285	2712111	0	-	0.49	(0.485,0.523]	chr5	267075	478	INTRON	INTRON	SERINC5	ENSG00000164300.17	ENST00000509193.5:ENST00000632581.1:ENST00000512972.6:ENST00000507668.7:ENST00000513907.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.60518	4.783785	4.96239	0.0518747	0.0233371	0.148503	0.110098
chr5	119269407	119269506	2516599	0	+	0.50505	(0.485,0.523]	chr5	249986	1	INTRON	INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.60518	4.783785	4.96239	0.0518747	0.0233371	0.148503	0.110098
chr5	157837438	157837538	2796558	0	-	0.28	[0,0.29]	chr5	274645	195	INTRON	INTRON	CLINT1	ENSG00000113282.14	ENST00000523094.5:ENST00000411809.7:ENST00000530742.5:ENST00000523908.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.62442	4.783325	4.94223	0.0379936	0.019938	0.131324	0.100864
chr8	66668893	66668992	3836792	0	+	0.282828	[0,0.29]	chr8	368383	8	INTRON	INTRON	C8orf44	ENSG00000288596.2	ENST00000521113.1:ENST00000661636.1:ENST00000521889.5	lncRNA	lncRNA	lncRNA	lncRNA	0	41	2	4.62442	4.783325	4.94223	0.0379936	0.019938	0.131324	0.100864
chr11	70765766	70765866	5061939	0	-	0.37	(0.36,0.39]	chr11	492701	479	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	96	2	3.59265	4.7833000000000006	5.97395	0.0145438	0.00786519	0.0823572	0.0576321
chr7	32615103	32615203	3566390	0	-	0.38	(0.36,0.39]	chr7	344205	214	INTRON	INTRON	DPY19L1P1	ENSG00000229358.3	ENST00000417811.2	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	96	2	3.59265	4.7833000000000006	5.97395	0.0145438	0.00786519	0.0823572	0.0576321
chr7	138510402	138510502	3502505	0	+	0.42	(0.419,0.45]	chr7	337502	56	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	98	2	3.4957	4.78286	6.07002	0.0143746	0.0102234	0.0821732	0.0678072
chr1	12584447	12584546	402447	0	-	0.585859	(0.58,1]	chr1	46222	34	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	646	2	4.60916	4.78279	4.95642	1.61744e-4	1.54116e-5	0.00713466	6.98728e-4
chr2	237578721	237578815	1388032	0	-	0.638298	(0.58,1]	chr2	148326	7	EXON_MRNA	EXON_MRNA:INTRON	RAB17	ENSG00000124839.13	ENST00000392001.6:ENST00000264601.8:ENST00000477149.5:ENST00000409576.1:ENST00000414278.1:ENST00000409822.1:ENST00000411462.5:ENST00000430445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	1118	2	4.07586	4.78237	5.48888	9.84461e-5	2.54013e-5	0.00288101	0.0027029
chr16	4840505	4840605	6544790	0	-	0.42	(0.419,0.45]	chr16	651184	72	INTRON	INTRON	GLYR1	ENSG00000140632.17	ENST00000321919.14:ENST00000436648.9:ENST00000588732.5:ENST00000589389.5:ENST00000591451.5:ENST00000588297.5:ENST00000587875.1:ENST00000591159.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	97	2	3.74317	4.782265000000001	5.82136	0.0210659	0.00581478	0.0996078	0.047264
chr13	98260701	98260801	5634838	0	+	0.47	(0.45,0.485]	chr13	553480	155	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	1	120	2	3.80814	4.782095	5.75605	0.014016	0.002004	0.0807693	0.0230381
chr10	119592696	119592796	4773709	0	-	0.42	(0.419,0.45]	chr10	456435	4	SS3_PROX	SS3_PROX:INTRON	TIAL1	ENSG00000151923.18	ENST00000369093.6:ENST00000436547.7:ENST00000489822.5:ENST00000497671.5:ENST00000470781.5:ENST00000462373.1:ENST00000479729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	133	2	3.00342	4.7818000000000005	6.56018	0.0118386	0.00648928	0.0746945	0.0532359
chr3	129785611	129785711	1913683	0	-	0.33	(0.29,0.33]	chr3	194421	970	INTRON	INTRON	TMCC1	ENSG00000172765.18	ENST00000393238.8:ENST00000426664.6:ENST00000648771.1:ENST00000505616.5	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.12201	4.78168	5.44135	0.0564091	0.0236557	0.171933	0.105002
chr3	10165348	10165448	1406531	0	+	0.61	(0.58,1]	chr3	151133	3	SS5_PROX	SS5_PROX:INTRON	IRAK2	ENSG00000134070.5	ENST00000256458.5	protein_coding	protein_coding	protein_coding	protein_coding	1	115	2	4.15237	4.781655000000001	5.41094	0.00456039	0.00240622	0.0438198	0.0261006
chr20	47350188	47350288	7570832	0	-	0.4	(0.39,0.419]	chr20	791097	2	SS3_PROX	SS3_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5	protein_coding	protein_coding	protein_coding	protein_coding	2	129	2	3.3633	4.781395	6.19949	0.0103045	0.00485133	0.0684871	0.0418836
chr3	60524209	60524309	1798849	0	-	0.37	(0.36,0.39]	chr3	186807	4435	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	1	101	2	3.22776	4.781105	6.33445	0.0175762	0.00804615	0.0933129	0.0600099
chr17	19665547	19665646	6696194	0	+	0.434343	(0.419,0.45]	chr17	672344	1	INTRON	INTRON	ALDH3A2	ENSG00000072210.19	ENST00000581518.6:ENST00000673136.1:ENST00000672465.1:ENST00000631291.2:ENST00000672357.1:ENST00000579855.5:ENST00000176643.11:ENST00000339618.8:ENST00000672564.1:ENST00000671878.1:ENST00000582991.6:ENST00000395575.7:ENST00000672487.1:ENST00000630662.2:ENST00000472059.6:ENST00000672567.1:ENST00000672709.1:ENST00000672059.1:ENST00000673472.1:ENST00000672608.1:ENST00000476965.5:ENST00000574078.3:ENST00000673064.1:ENST00000673516.1:ENST00000672591.1:ENST00000571163.2:ENST00000573947.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	97	2	3.62473	4.78096	5.93719	0.0176643	0.00764608	0.0909046	0.0563517
chr1	183473809	183473898	301145	0	+	0.370787	(0.36,0.39]	chr1	34240	2	UTR5	UTR5:EXON_MRNA:INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.69932	4.780905000000001	4.86249	0.0877431	0.0181775	0.183437	0.0955836
chr12	112425114	112425214	5331536	0	+	0.37	(0.36,0.39]	chr12	520142	56	INTRON	INTRON	PTPN11	ENSG00000179295.19	ENST00000688597.1:ENST00000692624.1:ENST00000685487.1:ENST00000690210.1:ENST00000639857.2:ENST00000392597.5:ENST00000687906.1:ENST00000351677.7:ENST00000635625.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.69932	4.780905000000001	4.86249	0.0877431	0.0181775	0.183437	0.0955836
chrX	97330019	97330119	7921218	0	+	0.38	(0.36,0.39]	chrX	829190	818	INTRON	INTRON	DIAPH2	ENSG00000147202.19	ENST00000373049.8:ENST00000324765.13	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.69932	4.780905000000001	4.86249	0.0877431	0.0181775	0.183437	0.0955836
chr10	15149042	15149141	4636631	0	-	0.515152	(0.485,0.523]	chr10	443033	71	INTRON	INTRON	NMT2	ENSG00000152465.18	ENST00000378165.9:ENST00000378150.1	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.12717	4.780849999999999	5.43453	0.0545434	0.0258944	0.167824	0.109555
chr7	1023703	1023803	3526460	0	-	0.61	(0.58,1]	chr7	340572	132	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	84	2	3.79235	4.780844999999999	5.76934	0.00849371	0.00302484	0.0617717	0.0305643
chr16	68319234	68319334	6476834	0	+	0.53	(0.523,0.58]	chr16	643277	3	INTRON	INTRON	PRMT7	ENSG00000132600.18	ENST00000686904.1:ENST00000562381.7:ENST00000689486.1:ENST00000693200.1:ENST00000685141.1:ENST00000562050.6:ENST00000565745.6:ENST00000685109.1:ENST00000689637.1:ENST00000692867.1:ENST00000693670.1:ENST00000692760.1:ENST00000687654.1:ENST00000441236.3:ENST00000675132.1:ENST00000688470.1:ENST00000691833.1:ENST00000690432.1:ENST00000691804.1:ENST00000691961.1:ENST00000690932.1:ENST00000692632.1:ENST00000687444.1:ENST00000692283.1:ENST00000569571.5:ENST00000692621.1:ENST00000566341.5:ENST00000686053.1:ENST00000692966.1:ENST00000691663.1:ENST00000564050.6:ENST00000449359.7:ENST00000569047.7:ENST00000693309.1:ENST00000690311.1:ENST00000565356.5:ENST00000564441.6:ENST00000563520.5:ENST00000687558.1:ENST00000339507.9:ENST00000688969.1:ENST00000568975.5:ENST00000563562.5:ENST00000561806.5:ENST00000562456.1:ENST00000566430.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	95	2	3.31719	4.780805	6.24442	0.0124719	0.00670944	0.0765738	0.0541591
chr1	1027837	1027936	993	0	+	0.69697	(0.58,1]	chr1	166	50	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.3962	4.780365	5.16453	0.0250928	0.0249802	0.114418	0.10758
chr1	228155556	228155655	358142	0	+	0.636364	(0.58,1]	chr1	40434	52	INTRON	INTRON	GJC2	ENSG00000198835.4	ENST00000366714.3	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.3962	4.780365	5.16453	0.0250928	0.0249802	0.114418	0.10758
chr13	113060092	113060192	5656238	0	+	0.67	(0.58,1]	chr13	555190	1	SS3_PROX	SS3_PROX:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.3962	4.780365	5.16453	0.0250928	0.0249802	0.114418	0.10758
chr17	78795452	78795551	6979403	0	-	0.59596	(0.58,1]	chr17	712641	30	INTRON	INTRON	USP36	ENSG00000055483.20	ENST00000588130.5:ENST00000587010.5:ENST00000591052.5:ENST00000589225.5:ENST00000587379.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.3962	4.780365	5.16453	0.0250928	0.0249802	0.114418	0.10758
chr2	127387887	127387975	1265655	0	-	0.761364	(0.58,1]	chr2	136377	6	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.3962	4.780365	5.16453	0.0250928	0.0249802	0.114418	0.10758
chr2	152718037	152718135	928647	0	+	0.581633	(0.58,1]	chr2	103216	5	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ARL6IP6	ENSG00000177917.12	ENST00000690727.1:ENST00000685752.1:ENST00000688293.1:ENST00000690119.1:ENST00000686839.1:ENST00000689155.1:ENST00000690703.1:ENST00000691702.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.3962	4.780365	5.16453	0.0250928	0.0249802	0.114418	0.10758
chr2	232902457	232902556	1383864	0	-	0.59596	(0.58,1]	chr2	147956	11	INTRON	INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.3962	4.780365	5.16453	0.0250928	0.0249802	0.114418	0.10758
chr2	239158557	239158656	1390282	0	-	0.686869	(0.58,1]	chr2	148698	14	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.3962	4.780365	5.16453	0.0250928	0.0249802	0.114418	0.10758
chr5	1105396	1105495	2608905	0	-	0.707071	(0.58,1]	chr5	259667	108	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.3962	4.780365	5.16453	0.0250928	0.0249802	0.114418	0.10758
chr7	76996828	76996927	3398768	0	+	0.616162	(0.58,1]	chr7	328286	61	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	42	2	4.3962	4.780365	5.16453	0.0250928	0.0249802	0.114418	0.10758
chr7	158920236	158920333	3523193	0	+	0.587629	(0.58,1]	chr7	340299	10	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.3962	4.780365	5.16453	0.0250928	0.0249802	0.114418	0.10758
chr9	134336141	134336240	4260784	0	+	0.69697	(0.58,1]	chr9	406311	91	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.3962	4.780365	5.16453	0.0250928	0.0249802	0.114418	0.10758
chr3	66035595	66035695	1815838	0	-	0.39	(0.36,0.39]	chr3	187318	265	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	356	2	4.5654	4.78028	4.99516	0.00415783	5.34421e-5	0.0417647	0.0017251
chr22	42889393	42889489	7823018	0	-	0.416667	(0.39,0.419]	chr22	820589	2	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000337959.8:ENST00000263246.8:ENST00000407585.5:ENST00000403744.7:ENST00000402229.5:ENST00000634914.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.69798	4.779955	4.86193	0.088901	0.0182739	0.183874	0.0958352
chr19	15643906	15643978	7215392	0	+	0.652778	(0.58,1]	chr19	737136	1	CDS	CDS:EXON_MRNA:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	146	2	2.32693	4.77991	7.23289	0.038688	3.89345e-4	0.142489	0.0113333
chr20	44424379	44424465	7483172	0	+	0.511628	(0.485,0.523]	chr20	779690	1	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000619550.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	111	2	3.49585	4.779865	6.06388	0.0222996	7.70737e-4	0.102226	0.0118331
chr22	28601554	28601654	7781046	0	-	0.38	(0.36,0.39]	chr22	815741	1586	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.6317	4.779525	4.92735	0.0950937	0.0160072	0.189021	0.0894586
chr2	162004625	162004724	1293621	0	-	0.282828	[0,0.29]	chr2	138833	46	INTRON	INTRON	DPP4	ENSG00000197635.11	ENST00000676810.1:ENST00000360534.8:ENST00000678566.1:ENST00000678668.1:ENST00000677015.1:ENST00000678583.1:ENST00000676624.1:ENST00000679104.1:ENST00000676479.1:ENST00000676996.1:ENST00000677212.1:ENST00000678740.1:ENST00000678522.1:ENST00000434918.6:ENST00000676768.1:ENST00000491591.5:ENST00000490286.5:ENST00000416189.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.45163	4.77928	5.10693	0.0292928	0.0278965	0.12105	0.116079
chr2	102800692	102800792	864858	0	+	0.37	(0.36,0.39]	chr2	97913	23	INTRON	INTRON	TMEM182	ENSG00000170417.16	ENST00000639249.1:ENST00000409528.5:ENST00000409173.5:ENST00000488134.5:ENST00000640575.2:ENST00000412401.3:ENST00000486293.1:ENST00000484094.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.7639	4.77924	4.79458	0.0811309	0.0207145	0.177951	0.102713
chr4	150470731	150470829	2344763	0	-	0.367347	(0.36,0.39]	chr4	234698	26	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000503716.5:ENST00000509835.5:ENST00000648823.1:ENST00000648626.1:ENST00000651695.1:ENST00000648878.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.7639	4.77924	4.79458	0.0811309	0.0207145	0.177951	0.102713
chr8	70603279	70603379	3995572	0	-	0.37	(0.36,0.39]	chr8	382313	28	INTRON	INTRON	TRAM1	ENSG00000067167.8	ENST00000262213.7:ENST00000521425.5:ENST00000521049.5:ENST00000520700.1:ENST00000518678.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.7639	4.77924	4.79458	0.0811309	0.0207145	0.177951	0.102713
chr11	57303577	57303675	5038252	0	-	0.602041	(0.58,1]	chr11	488042	2	INTRON	INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	209	2	4.43794	4.779235	5.12053	0.00248717	5.04672e-5	0.0315244	0.00165834
chr8	122848189	122848288	3910326	0	+	0.575758	(0.523,0.58]	chr8	373483	318	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.34118	4.779225	5.21727	0.0372357	0.0361597	0.139793	0.127853
chr13	97345109	97345208	5632036	0	+	0.40404	(0.39,0.419]	chr13	553194	15	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.63037	4.77858	4.92679	0.0963077	0.0160946	0.189169	0.0896852
chr3	158148393	158148493	1607356	0	+	0.41	(0.39,0.419]	chr3	169356	116	INTRON	INTRON	RSRC1	ENSG00000174891.14	ENST00000480820.5:ENST00000494002.5:ENST00000295930.7:ENST00000471994.5:ENST00000683733.1:ENST00000682221.1:ENST00000683831.1:ENST00000683516.1:ENST00000482822.3:ENST00000476899.6:ENST00000464171.5:ENST00000611884.5:ENST00000682164.1:ENST00000684604.1:ENST00000683899.1:ENST00000682500.1:ENST00000684683.1:ENST00000684512.1:ENST00000683394.1:ENST00000684156.1:ENST00000312179.10:ENST00000475278.6:ENST00000480119.5:ENST00000471911.5:ENST00000683137.1:ENST00000477788.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.63037	4.77858	4.92679	0.0963077	0.0160946	0.189169	0.0896852
chr7	67193774	67193873	3385972	0	+	0.40404	(0.39,0.419]	chr7	326607	102	INTRON	INTRON	TYW1	ENSG00000198874.14	ENST00000359626.10:ENST00000361660.8:ENST00000495971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.63037	4.77858	4.92679	0.0963077	0.0160946	0.189169	0.0896852
chr1	23038217	23038316	60408	0	+	0.323232	(0.29,0.33]	chr1	6284	72	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.33251	4.7784949999999995	5.22448	0.0396433	0.0331252	0.143388	0.123313
chr13	113212278	113212377	5657330	0	+	0.30303	(0.29,0.33]	chr13	555523	18	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000488558.2:ENST00000375440.9:ENST00000474116.5:ENST00000494985.5:ENST00000463426.5:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.33251	4.7784949999999995	5.22448	0.0396433	0.0331252	0.143388	0.123313
chr15	36681998	36682098	6075427	0	+	0.4	(0.39,0.419]	chr15	596875	134	INTRON	INTRON	CDIN1	ENSG00000186073.14	ENST00000566621.6:ENST00000570265.6:ENST00000564586.5:ENST00000569302.6:ENST00000642817.1:ENST00000646533.1:ENST00000646657.1:ENST00000437989.6:ENST00000566807.5:ENST00000643612.1:ENST00000567389.5:ENST00000562877.5:ENST00000338183.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.76257	4.778295	4.79402	0.0822354	0.0208208	0.179396	0.102713
chr20	23388355	23388454	7537107	0	-	0.40404	(0.39,0.419]	chr20	786591	67	INTRON	INTRON	NAPB	ENSG00000125814.17	ENST00000398425.7:ENST00000432543.6:ENST00000617876.4:ENST00000377026.4:ENST00000472855.5:ENST00000468128.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.76257	4.778295	4.79402	0.0822354	0.0208208	0.179396	0.102713
chr7	138550263	138550362	3502911	0	+	0.454545	(0.45,0.485]	chr7	337534	111	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	410	2	3.83188	4.778285	5.72469	0.0041946	1.70199e-5	0.0420914	7.48669e-4
chr1	820612	820712	379716	0	-	0.55	(0.523,0.58]	chr1	42663	421	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000634337.2:ENST00000635509.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	43	2	4.43597	4.7782350000000005	5.1205	0.0416463	0.0313935	0.136301	0.127822
chr10	79114118	79114218	4532496	0	+	0.58	(0.523,0.58]	chr10	432420	445	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.43597	4.7782350000000005	5.1205	0.0416463	0.0313935	0.136301	0.127822
chr10	119765665	119765765	4596538	0	+	0.53	(0.523,0.58]	chr10	439320	52	INTRON	INTRON	INPP5F	ENSG00000198825.15	ENST00000649297.1:ENST00000648621.1:ENST00000650623.2:ENST00000649251.1:ENST00000649742.1:ENST00000647933.1:ENST00000650305.1:ENST00000369081.3:ENST00000648661.1:ENST00000648262.1:ENST00000648515.1:ENST00000649454.1:ENST00000649957.1:ENST00000647699.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.43597	4.7782350000000005	5.1205	0.0416463	0.0313935	0.136301	0.127822
chr16	74629537	74629630	6642284	0	-	0.548387	(0.523,0.58]	chr16	664036	5	INTRON	INTRON	RFWD3	ENSG00000168411.14	ENST00000361070.9:ENST00000571750.5:ENST00000575154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.43597	4.7782350000000005	5.1205	0.0416463	0.0313935	0.136301	0.127822
chr16	85238265	85238365	6515451	0	+	0.58	(0.523,0.58]	chr16	646377	105	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	43	2	4.43597	4.7782350000000005	5.1205	0.0416463	0.0313935	0.136301	0.127822
chr20	34561279	34561379	7547040	0	-	0.55	(0.523,0.58]	chr20	787853	3	SS3_PROX	SS3_PROX:INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.43597	4.7782350000000005	5.1205	0.0416463	0.0313935	0.136301	0.127822
chr11	68264066	68264166	5057260	0	-	0.45	(0.419,0.45]	chr11	492360	2	SS3_PROX	SS3_PROX:INTRON	C11orf24	ENSG00000171067.11	ENST00000304271.11:ENST00000533310.5:ENST00000530166.5:ENST00000527280.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.19215	4.77805	5.36395	0.0617113	0.0407485	0.18013	0.135868
chr7	47366768	47366868	3587459	0	-	0.56	(0.523,0.58]	chr7	346030	201	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	3.58927	4.778005	5.96674	0.0109075	0.00656975	0.0707085	0.0510026
chr7	76999908	77000008	3398799	0	+	0.63	(0.58,1]	chr7	328287	2	SS3_PROX	SS3_PROX:INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	43	2	4.29454	4.77796	5.26138	0.0305531	0.021217	0.126768	0.0996078
chr9	134342428	134342528	4260847	0	+	0.65	(0.58,1]	chr9	406311	154	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.29454	4.77796	5.26138	0.0305531	0.021217	0.126768	0.0996078
chr17	5227248	5227348	6843810	0	-	0.49	(0.485,0.523]	chr17	692865	34	INTRON	INTRON	SCIMP	ENSG00000161929.15	ENST00000574081.6:ENST00000399600.8:ENST00000571800.5:ENST00000574297.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.33772	4.777705	5.21769	0.03818	0.0359739	0.140822	0.127853
chr16	69688356	69688455	6485276	0	+	0.363636	(0.36,0.39]	chr16	644053	24	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6:ENST00000562429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	99	2	3.30849	4.77763	6.24677	0.0148029	0.00931845	0.0847481	0.0649153
chr12	23863892	23863992	5387661	0	-	0.35	(0.33,0.36]	chr12	528181	173	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000537393.5:ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2:ENST00000538083.1:ENST00000536729.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.49572	4.777545	5.05937	0.103264	0.0112642	0.197541	0.071709
chr13	38351892	38351989	5575943	0	+	0.350515	(0.33,0.36]	chr13	549839	13	INTRON	INTRON	UFM1	ENSG00000120686.12	ENST00000494372.1:ENST00000239878.9:ENST00000379649.5:ENST00000464423.1:ENST00000437952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.49572	4.777545	5.05937	0.103264	0.0112642	0.197541	0.071709
chr2	72423619	72423719	1184162	0	-	0.34	(0.33,0.36]	chr2	128669	434	INTRON	INTRON	EXOC6B	ENSG00000144036.16	ENST00000272427.11:ENST00000634650.1:ENST00000464347.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.49572	4.777545	5.05937	0.103264	0.0112642	0.197541	0.071709
chr9	34088054	34088152	4295285	0	-	0.295918	(0.29,0.33]	chr9	410476	18	UTR3	UTR3:EXON_MRNA	DCAF12	ENSG00000198876.13	ENST00000361264.9	protein_coding	protein_coding	protein_coding	protein_coding	1	111	2	3.02123	4.777345	6.53346	0.0461219	2.22768e-4	0.143055	0.00489571
chr1	43561017	43561117	107049	0	+	0.62	(0.58,1]	chr1	13192	67	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	283	2	4.44249	4.777195000000001	5.1119	5.51806e-4	1.04901e-4	0.0136798	0.00284431
chr6	147741754	147741854	3029586	0	+	0.46	(0.45,0.485]	chr6	295875	43	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	2	124	2	3.31829	4.77719	6.23609	0.00778782	0.00476164	0.0590114	0.0414441
chr2	216030790	216030889	1369592	0	-	0.424242	(0.419,0.45]	chr2	145850	173	INTRON	INTRON	MREG:PECR	ENSG00000118242.16:ENSG00000115425.14	ENST00000439791.5:ENST00000424992.5:ENST00000420348.1:ENST00000442122.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	111	2	2.92337	4.777035	6.6307	0.0333415	0.00576404	0.133139	0.0500197
chr10	5647976	5648075	4622421	0	-	0.545455	(0.523,0.58]	chr10	441815	51	INTRON	INTRON	ASB13	ENSG00000196372.13	ENST00000357700.11:ENST00000479033.1:ENST00000459912.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.65157	4.776895	4.90222	0.0787008	0.0125132	0.175203	0.0765738
chr16	16038690	16038789	6406896	0	+	0.555556	(0.523,0.58]	chr16	633041	17	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.65157	4.776895	4.90222	0.0787008	0.0125132	0.175203	0.0765738
chr16	30991532	30991631	6579796	0	-	0.565657	(0.523,0.58]	chr16	657721	24	UTR3	UTR3:EXON_MRNA	STX1B	ENSG00000099365.11	ENST00000215095.11	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.65157	4.776895	4.90222	0.0787008	0.0125132	0.175203	0.0765738
chr2	3460013	3460096	711034	0	+	0.566265	(0.523,0.58]	chr2	83178	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000479955.5:ENST00000497597.5:ENST00000473348.5:ENST00000461577.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.65157	4.776895	4.90222	0.0787008	0.0125132	0.175203	0.0765738
chr3	13206024	13206124	1691202	0	-	0.57	(0.523,0.58]	chr3	176566	415	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.65157	4.776895	4.90222	0.0787008	0.0125132	0.175203	0.0765738
chrX	1443511	1443611	7965928	0	-	0.56	(0.523,0.58]	chrX	834314	8	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9:ENST00000474865.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.65157	4.776895	4.90222	0.0787008	0.0125132	0.175203	0.0765738
chr1	228156546	228156645	358152	0	+	0.676768	(0.58,1]	chr1	40434	62	INTRON	INTRON	GJC2	ENSG00000198835.4	ENST00000366714.3	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.66416	4.7768049999999995	4.88945	0.0388928	0.0144381	0.131324	0.0833845
chr11	72235015	72235115	4889426	0	+	0.66	(0.58,1]	chr11	471842	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	INPPL1	ENSG00000165458.15	ENST00000298229.7:ENST00000538751.5:ENST00000541303.5:ENST00000545355.5:ENST00000535985.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.66416	4.7768049999999995	4.88945	0.0388928	0.0144381	0.131324	0.0833845
chr16	16274659	16274743	6408432	0	+	0.583333	(0.58,1]	chr16	633351	2	SS3_PROX	SS3_PROX:INTRON	NOMO3	ENSG00000103226.19	ENST00000676846.1:ENST00000399336.9:ENST00000677912.1:ENST00000677777.1:ENST00000678192.1:ENST00000678393.1:ENST00000678538.1:ENST00000679086.1:ENST00000574894.2:ENST00000678080.1:ENST00000677260.1:ENST00000676550.1:ENST00000263012.10:ENST00000575225.5:ENST00000677781.1:ENST00000677163.1:ENST00000678148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.66416	4.7768049999999995	4.88945	0.0388928	0.0144381	0.131324	0.0833845
chr19	1168693	1168783	7305739	0	-	0.677778	(0.58,1]	chr19	753057	1	UTR5	UTR5:EXON_MRNA:INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5:ENST00000587655.2	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.66416	4.7768049999999995	4.88945	0.0388928	0.0144381	0.131324	0.0833845
chr22	50732212	50732312	7755515	0	+	0.59	(0.58,1]	chr22	812817	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.66416	4.7768049999999995	4.88945	0.0388928	0.0144381	0.131324	0.0833845
chr7	5295034	5295134	3312057	0	+	0.6	(0.58,1]	chr7	321118	1	SS5_PROX	SS5_PROX:INTRON	SLC29A4	ENSG00000164638.11	ENST00000396872.8:ENST00000297195.8:ENST00000406453.3	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.66416	4.7768049999999995	4.88945	0.0388928	0.0144381	0.131324	0.0833845
chr2	3240217	3240317	1080503	0	-	0.54	(0.523,0.58]	chr2	117609	256	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000482570.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.71922	4.776730000000001	4.83424	0.0721601	0.0144272	0.168159	0.0833845
chr20	32132512	32132612	7454399	0	+	0.55	(0.523,0.58]	chr20	775906	1	SS3_PROX	SS3_PROX:INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000442842.5:ENST00000450829.5:ENST00000217315.9:ENST00000417389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.71922	4.776730000000001	4.83424	0.0721601	0.0144272	0.168159	0.0833845
chr16	85560659	85560759	6518679	0	+	0.51	(0.485,0.523]	chr16	646396	39	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.43249	4.776705	5.12092	0.0414411	0.0322299	0.136301	0.12988
chr17	81139398	81139498	6982896	0	-	0.49	(0.485,0.523]	chr17	713268	45	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.43249	4.776705	5.12092	0.0414411	0.0322299	0.136301	0.12988
chr2	215425884	215425984	1368571	0	-	0.5	(0.485,0.523]	chr2	145780	2	INTRON	INTRON	FN1	ENSG00000115414.21	ENST00000421182.5:ENST00000323926.10:ENST00000336916.8:ENST00000357867.8:ENST00000359671.5:ENST00000443816.5:ENST00000446046.5:ENST00000354785.11:ENST00000432072.6:ENST00000356005.8:ENST00000426059.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.43249	4.776705	5.12092	0.0414411	0.0322299	0.136301	0.12988
chr1	17678880	17678980	55000	0	+	0.36	(0.33,0.36]	chr1	5603	139	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.65869	4.7766850000000005	4.89468	0.0629186	0.0248983	0.160778	0.114418
chr17	59801114	59801213	6768899	0	+	0.343434	(0.33,0.36]	chr17	682833	269	INTRON	INTRON	VMP1	ENSG00000062716.13	ENST00000262291.9:ENST00000592619.5:ENST00000591877.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.65869	4.7766850000000005	4.89468	0.0629186	0.0248983	0.160778	0.114418
chr20	3491996	3492096	7419771	0	+	0.34	(0.33,0.36]	chr20	772906	201	INTRON	INTRON	ATRN	ENSG00000088812.18	ENST00000262919.10:ENST00000446916.2	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.65869	4.7766850000000005	4.89468	0.0629186	0.0248983	0.160778	0.114418
chr4	23780460	23780560	2208491	0	-	0.34	(0.33,0.36]	chr4	223243	149	INTRON	INTRON	PPARGC1A	ENSG00000109819.9	ENST00000509702.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	42	2	4.65869	4.7766850000000005	4.89468	0.0629186	0.0248983	0.160778	0.114418
chr7	40617376	40617476	3358696	0	+	0.32	(0.29,0.33]	chr7	324373	1180	INTRON	INTRON	SUGCT	ENSG00000175600.16	ENST00000335693.9:ENST00000401647.7:ENST00000628514.3	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.65868	4.776045	4.89341	0.0735584	0.0135896	0.17026	0.0811697
chr7	99124991	99125090	3650215	0	-	0.292929	(0.29,0.33]	chr7	351382	34	INTRON	INTRON	SMURF1	ENSG00000198742.10	ENST00000361368.7:ENST00000361125.1:ENST00000472627.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.65868	4.776045	4.89341	0.0735584	0.0135896	0.17026	0.0811697
chr3	39147222	39147320	1739961	0	-	0.622449	(0.58,1]	chr3	180188	1	INTRON	INTRON	CSRNP1	ENSG00000144655.15	ENST00000273153.10:ENST00000514182.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.49116	4.77593	5.0607	0.029633	0.0207449	0.116079	0.102713
chr4	3414844	3414944	2005596	0	+	0.61	(0.58,1]	chr4	204696	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000513784.7:ENST00000338806.4:ENST00000506998.5:ENST00000508158.5:ENST00000504194.5:ENST00000512266.5:ENST00000513991.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.49116	4.77593	5.0607	0.029633	0.0207449	0.116079	0.102713
chr7	47509643	47509743	3588909	0	-	0.65	(0.58,1]	chr7	346138	23	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.49116	4.77593	5.0607	0.029633	0.0207449	0.116079	0.102713
chr9	133470750	133470848	4259764	0	+	0.642857	(0.58,1]	chr9	406088	22	UTR3	UTR3:EXON_MRNA	CACFD1	ENSG00000160325.15	ENST00000540581.5:ENST00000542192.5:ENST00000291722.11:ENST00000316948.9	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.49116	4.77593	5.0607	0.029633	0.0207449	0.116079	0.102713
chr8	99288848	99288948	3879974	0	+	0.36	(0.33,0.36]	chr8	371782	132	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000522802.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	46	2	4.211	4.77591	5.34082	0.0541541	0.0338211	0.167824	0.124319
chr9	96368705	96368805	4343832	0	-	0.31	(0.29,0.33]	chr9	415050	4	SS3_PROX	SS3_PROX:INTRON	SLC35D2	ENSG00000130958.13	ENST00000253270.13:ENST00000375259.9:ENST00000482643.2:ENST00000375257.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.72635	4.775895	4.82544	0.0672935	0.0156279	0.163263	0.0877396
chr17	82005442	82005541	6815351	0	+	0.656566	(0.58,1]	chr17	688641	12	EXON_MRNA	EXON_MRNA:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	225	2	3.85844	4.775745000000001	5.69305	0.00830865	6.9672e-6	0.061139	3.99493e-4
chr1	213990281	213990380	339378	0	+	0.454545	(0.45,0.485]	chr1	38089	1	INTRON	INTRON	PROX1	ENSG00000117707.16	ENST00000471129.1:ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2:ENST00000607425.1	protein_coding	protein_coding	protein_coding	protein_coding	2	132	2	3.83469	4.77564	5.71659	0.018513	0.00120886	0.0928429	0.0162302
chr2	233396596	233396696	1060044	0	+	0.52	(0.485,0.523]	chr2	115358	43	INTRON	INTRON	DGKD	ENSG00000077044.11	ENST00000264057.7:ENST00000427930.5:ENST00000447484.5:ENST00000409813.7	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.65198	4.77534	4.8987	0.0783889	0.0129327	0.175203	0.0778105
chr22	20569131	20569229	7688043	0	+	0.520408	(0.485,0.523]	chr22	804399	1	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000433831.5:ENST00000292733.11:ENST00000263205.11:ENST00000406969.5:ENST00000382974.6:ENST00000492381.5:ENST00000478831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.65198	4.77534	4.8987	0.0783889	0.0129327	0.175203	0.0778105
chr4	3343553	3343652	2004871	0	+	0.515152	(0.485,0.523]	chr4	204663	1	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.65198	4.77534	4.8987	0.0783889	0.0129327	0.175203	0.0778105
chr1	43597547	43597647	107426	0	+	0.64	(0.58,1]	chr1	13241	4	SS3_PROX	SS3_PROX:INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	3	288	2	4.26115	4.775265	5.28938	0.00137101	2.84381e-5	0.0226056	0.00108203
chr13	113586847	113586947	5658868	0	+	0.52	(0.485,0.523]	chr13	555775	6	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.71964	4.775180000000001	4.83072	0.0718646	0.0148956	0.168159	0.0847741
chr16	46918120	46918220	6442769	0	+	0.49	(0.485,0.523]	chr16	639025	1	SS3_PROX	SS3_PROX:INTRON	GPT2	ENSG00000166123.14	ENST00000340124.9:ENST00000440783.2:ENST00000562801.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.71964	4.775180000000001	4.83072	0.0718646	0.0148956	0.168159	0.0847741
chr16	50602995	50603095	6451957	0	+	0.51	(0.485,0.523]	chr16	639902	444	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.71964	4.775180000000001	4.83072	0.0718646	0.0148956	0.168159	0.0847741
chr16	75096150	75096250	6492887	0	+	0.52	(0.485,0.523]	chr16	645364	4	SS5_PROX	SS5_PROX:INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1:ENST00000579084.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.71964	4.775180000000001	4.83072	0.0718646	0.0148956	0.168159	0.0847741
chr3	37864077	37864177	1443284	0	+	0.5	(0.485,0.523]	chr3	153956	14	INTRON	INTRON	CTDSPL	ENSG00000144677.15	ENST00000273179.10:ENST00000443503.6:ENST00000435525.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.71964	4.775180000000001	4.83072	0.0718646	0.0148956	0.168159	0.0847741
chr7	229231	229331	3305947	0	+	0.51	(0.485,0.523]	chr7	320161	199	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.71964	4.775180000000001	4.83072	0.0718646	0.0148956	0.168159	0.0847741
chr17	81074176	81074276	6813762	0	+	0.53	(0.523,0.58]	chr17	688114	100	INTRON	INTRON	BAIAP2	ENSG00000175866.16	ENST00000321280.11:ENST00000576470.5:ENST00000575750.5:ENST00000428708.7:ENST00000572329.5:ENST00000575989.5:ENST00000570913.5:ENST00000575712.5:ENST00000575245.5:ENST00000321300.10:ENST00000435091.7:ENST00000573894.5:ENST00000571530.5:ENST00000572918.5:ENST00000573017.5:ENST00000575958.5:ENST00000573659.5:ENST00000572073.5:ENST00000573677.5:ENST00000574804.5:ENST00000576364.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	121	2	3.37623	4.77503	6.17383	0.00760615	0.00375949	0.0579698	0.0353672
chr11	14676544	14676644	4805346	0	+	0.37	(0.36,0.39]	chr11	460690	311	INTRON	INTRON	PDE3B	ENSG00000152270.9	ENST00000282096.9:ENST00000455098.2:ENST00000534317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.72331	4.774514999999999	4.82572	0.0751666	0.0236929	0.172839	0.111208
chr6	63659069	63659168	2934496	0	+	0.40404	(0.39,0.419]	chr6	288800	119	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.55943	4.774145	4.98886	0.104562	0.0142222	0.19835	0.0833845
chr6	80248811	80248911	2945730	0	+	0.4	(0.39,0.419]	chr6	289886	452	INTRON	INTRON	BCKDHB	ENSG00000083123.15	ENST00000356489.9:ENST00000320393.9:ENST00000468520.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.55943	4.774145	4.98886	0.104562	0.0142222	0.19835	0.0833845
chr6	99486816	99486914	3209340	0	-	0.408163	(0.39,0.419]	chr6	311647	36	INTRON	INTRON	USP45	ENSG00000123552.18	ENST00000500704.7:ENST00000496518.6:ENST00000327681.10:ENST00000369233.6:ENST00000506871.5:ENST00000507717.5:ENST00000329966.10:ENST00000472914.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.55943	4.774145	4.98886	0.104562	0.0142222	0.19835	0.0833845
chr17	15463865	15463964	6860073	0	-	0.585859	(0.58,1]	chr17	695067	104	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	100	2	3.23007	4.774135	6.3182	0.0271644	1.74994e-4	0.112113	0.00410754
chr12	50435724	50435824	5228996	0	+	0.43	(0.419,0.45]	chr12	507636	1	SS5_PROX	SS5_PROX:INTRON	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1	protein_coding	protein_coding	protein_coding	protein_coding	2	130	2	3.22297	4.774095	6.32522	0.00956261	0.00712864	0.0658012	0.0541241
chr17	49750249	49750349	6926298	0	-	0.43	(0.419,0.45]	chr17	705614	31	INTRON	INTRON	FAM117A	ENSG00000121104.8	ENST00000240364.7:ENST00000513602.5:ENST00000503855.5:ENST00000514018.5:ENST00000505159.5:ENST00000506156.1:ENST00000509347.5:ENST00000503720.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.56048	4.774075	4.98767	0.0669167	0.0337332	0.16272	0.133139
chr4	150396463	150396563	2344015	0	-	0.42	(0.419,0.45]	chr4	234674	422	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000503716.5:ENST00000509835.5:ENST00000648823.1:ENST00000648626.1:ENST00000651695.1:ENST00000648878.1:ENST00000651035.1:ENST00000507224.5:ENST00000649874.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.56048	4.774075	4.98767	0.0669167	0.0337332	0.16272	0.133139
chr11	71997202	71997301	4889012	0	+	0.50505	(0.485,0.523]	chr11	471679	10	UTR3	UTR3:EXON_MRNA	RNF121	ENSG00000137522.18	ENST00000393713.7:ENST00000361756.8:ENST00000526549.5:ENST00000530137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	320	2	4.7649	4.773944999999999	4.78299	0.0021542	6.4158e-5	0.0291415	0.00196733
chr13	112553257	112553356	5752452	0	-	0.555556	(0.523,0.58]	chr13	563939	47	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000464139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	91	2	3.55341	4.77386	5.99431	0.0104033	0.00716661	0.0686837	0.0541871
chr15	22557691	22557791	6059851	0	+	0.56	(0.523,0.58]	chr15	594971	2	INTRON	INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	41	2	4.58058	4.77386	4.96714	0.0860403	0.0108948	0.181766	0.0706366
chr17	66508869	66508969	6785494	0	+	0.53	(0.523,0.58]	chr17	684238	122	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.58058	4.77386	4.96714	0.0860403	0.0108948	0.181766	0.0706366
chr2	47006913	47007003	787899	0	+	0.544444	(0.523,0.58]	chr2	90018	2	SS5_PROX	SS5_PROX:INTRON	TTC7A	ENSG00000068724.17	ENST00000409245.5:ENST00000319190.11:ENST00000461601.5:ENST00000394850.6:ENST00000441914.5:ENST00000409825.5:ENST00000491786.5:ENST00000484061.5:ENST00000440051.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.58058	4.77386	4.96714	0.0860403	0.0108948	0.181766	0.0706366
chr22	31624349	31624440	7788308	0	-	0.538462	(0.523,0.58]	chr22	817184	1	INTRON	INTRON	PISD	ENSG00000241878.12	ENST00000460723.5:ENST00000439502.7:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5:ENST00000474017.5:ENST00000478893.5:ENST00000491342.1:ENST00000422020.5:ENST00000442379.1:ENST00000429683.1:ENST00000431201.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.58058	4.77386	4.96714	0.0860403	0.0108948	0.181766	0.0706366
chr3	195710276	195710375	1665021	0	+	0.525253	(0.523,0.58]	chr3	174623	8	INTRON	INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000420851.6:ENST00000431767.5:ENST00000451228.5:ENST00000438608.5:ENST00000445707.3:ENST00000630874.2:ENST00000432194.7:ENST00000420459.5:ENST00000424730.5:ENST00000417704.5:ENST00000595086.5:ENST00000600197.1:ENST00000594446.5:ENST00000629537.2:ENST00000627035.2:ENST00000631359.2:ENST00000629721.2:ENST00000597662.5:ENST00000599566.5:ENST00000600288.5:ENST00000626872.2:ENST00000630197.2:ENST00000594976.5:ENST00000612098.4:ENST00000615212.4:ENST00000594101.3:ENST00000628439.2:ENST00000631352.2:ENST00000626904.2:ENST00000600382.5:ENST00000627863.2:ENST00000628668.2:ENST00000628053.2:ENST00000625971.2:ENST00000630675.2:ENST00000597982.5:ENST00000630387.2:ENST00000626585.2:ENST00000595382.5:ENST00000627016.2:ENST00000626566.2:ENST00000625383.2:ENST00000626979.2:ENST00000628392.2:ENST00000627471.2:ENST00000625531.2:ENST00000626852.2:ENST00000593988.2:ENST00000626233.2:ENST00000628508.2:ENST00000628003.2:ENST00000631263.2:ENST00000629511.2:ENST00000627356.2:ENST00000631345.2:ENST00000631037.2:ENST00000626346.2:ENST00000628567.2:ENST00000432601.3:ENST00000627689.2:ENST00000628754.2:ENST00000629807.2:ENST00000628125.2:ENST00000630415.2:ENST00000627609.1:ENST00000627993.2:ENST00000628982.1:ENST00000597871.1:ENST00000455807.2:ENST00000627297.2:ENST00000625665.1:ENST00000626093.1	lncRNA	lncRNA	lncRNA	lncRNA	0	41	2	4.58058	4.77386	4.96714	0.0860403	0.0108948	0.181766	0.0706366
chr4	3365191	3365291	2005088	0	+	0.58	(0.523,0.58]	chr4	204663	218	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.58058	4.77386	4.96714	0.0860403	0.0108948	0.181766	0.0706366
chr7	229530	229630	3305950	0	+	0.57	(0.523,0.58]	chr7	320161	202	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.58058	4.77386	4.96714	0.0860403	0.0108948	0.181766	0.0706366
chr7	99380952	99381052	3427406	0	+	0.57	(0.523,0.58]	chr7	331164	31	INTRON	INTRON	ARPC1B	ENSG00000130429.16	ENST00000443222.6:ENST00000414376.6:ENST00000645391.1:ENST00000695607.1:ENST00000455009.6:ENST00000484375.5:ENST00000695608.1:ENST00000418347.6:ENST00000646101.2:ENST00000427217.6:ENST00000451682.5:ENST00000431816.6:ENST00000458033.6:ENST00000417330.6:ENST00000695609.1:ENST00000484600.6:ENST00000429246.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.58058	4.77386	4.96714	0.0860403	0.0108948	0.181766	0.0706366
chr8	140530944	140531044	4088555	0	-	0.55	(0.523,0.58]	chr8	388514	109	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.58058	4.77386	4.96714	0.0860403	0.0108948	0.181766	0.0706366
chr1	821511	821611	379725	0	-	0.54	(0.523,0.58]	chr1	42663	430	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000634337.2:ENST00000635509.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	45	2	4.23973	4.77384	5.30795	0.0444247	0.0315825	0.153511	0.120781
chr22	46615385	46615485	7744329	0	+	0.58	(0.523,0.58]	chr22	812034	377	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000447351.5:ENST00000431155.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.23973	4.77384	5.30795	0.0444247	0.0315825	0.153511	0.120781
chr7	74527142	74527242	3392105	0	+	0.53	(0.523,0.58]	chr7	327389	26	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6:ENST00000476977.5:ENST00000489094.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.23973	4.77384	5.30795	0.0444247	0.0315825	0.153511	0.120781
chr9	134353307	134353406	4260956	0	+	0.575758	(0.523,0.58]	chr9	406311	263	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.23973	4.77384	5.30795	0.0444247	0.0315825	0.153511	0.120781
chr20	32540962	32541061	7544293	0	-	0.575758	(0.523,0.58]	chr20	787427	47	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000201961.6	protein_coding	protein_coding	protein_coding	protein_coding	2	496	2	3.18279	4.773515	6.36424	0.0168396	7.88906e-5	0.0919482	0.00494046
chr11	70948107	70948207	5063772	0	-	0.57	(0.523,0.58]	chr11	492740	512	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000618363.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	41	2	4.7629	4.77337	4.78384	0.0663135	0.0167014	0.162385	0.0917029
chr17	77469554	77469654	6805074	0	+	0.58	(0.523,0.58]	chr17	686810	26	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.7629	4.77337	4.78384	0.0663135	0.0167014	0.162385	0.0917029
chr18	48936010	48936109	7157865	0	-	0.545455	(0.523,0.58]	chr18	727804	24	INTRON	INTRON	SMAD7	ENSG00000101665.10	ENST00000262158.8:ENST00000545051.2:ENST00000591805.5:ENST00000589634.1:ENST00000585986.1:ENST00000586093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	41	2	4.7629	4.77337	4.78384	0.0663135	0.0167014	0.162385	0.0917029
chr19	58576088	58576187	7301868	0	+	0.535354	(0.523,0.58]	chr19	752218	1	INTRON	INTRON	CENPBD2P:ENSG00000286104	ENSG00000213753.11:ENSG00000286104.1	ENST00000479047.1:ENST00000651608.1:ENST00000487264.5:ENST00000473164.1:ENST00000493504.1	lncRNA	lncRNA	lncRNA:transcribed_processed_pseudogene	lncRNA:processed_transcript	0	41	2	4.7629	4.77337	4.78384	0.0663135	0.0167014	0.162385	0.0917029
chr22	19899568	19899667	7765039	0	-	0.545455	(0.523,0.58]	chr22	813988	1	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.7629	4.77337	4.78384	0.0663135	0.0167014	0.162385	0.0917029
chr6	53840909	53841009	2928040	0	+	0.55	(0.523,0.58]	chr6	288340	451	INTRON	INTRON	LRRC1	ENSG00000137269.15	ENST00000487251.5:ENST00000370888.6:ENST00000370882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.7629	4.77337	4.78384	0.0663135	0.0167014	0.162385	0.0917029
chr7	214764	214863	3305802	0	+	0.575758	(0.523,0.58]	chr7	320161	54	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.7629	4.77337	4.78384	0.0663135	0.0167014	0.162385	0.0917029
chr3	152330015	152330115	1598998	0	+	0.36	(0.33,0.36]	chr3	168984	277	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	1	94	2	3.86561	4.773350000000001	5.68109	0.0201622	0.00387524	0.0973366	0.0362399
chr22	20136612	20136711	7686997	0	+	0.535354	(0.523,0.58]	chr22	804236	42	INTRON	INTRON	ZDHHC8	ENSG00000099904.16	ENST00000436518.5:ENST00000334554.12:ENST00000405930.3:ENST00000320602.11:ENST00000468112.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	124	2	3.01186	4.77325	6.53464	0.00944557	0.00395533	0.0650078	0.0406092
chr2	30557247	30557347	744901	0	+	0.43	(0.419,0.45]	chr2	86882	42	INTRON	INTRON	LCLAT1	ENSG00000172954.14	ENST00000465200.5:ENST00000319406.8:ENST00000379509.8:ENST00000491680.6:ENST00000309052.8:ENST00000478015.5:ENST00000476038.5:ENST00000476535.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	98	2	3.42658	4.77324	6.1199	0.0132894	0.0119035	0.0787251	0.0749304
chr22	35877971	35878071	7804318	0	-	0.36	(0.33,0.36]	chr22	817785	375	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000359369.8:ENST00000695807.1:ENST00000408983.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	95	2	3.45733	4.77321	6.08909	0.0103694	0.0102015	0.0686683	0.0678072
chr12	30754035	30754125	5404065	0	-	0.366667	(0.36,0.39]	chr12	529346	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CAPRIN2	ENSG00000110888.19	ENST00000695402.1:ENST00000298892.9:ENST00000454014.6:ENST00000687797.1:ENST00000395805.6:ENST00000690126.1:ENST00000684863.1:ENST00000695370.1:ENST00000695369.1:ENST00000542550.6:ENST00000686317.1:ENST00000695371.1:ENST00000695328.1:ENST00000695400.1:ENST00000695329.1:ENST00000540436.6:ENST00000695398.1:ENST00000694880.1:ENST00000688163.1:ENST00000692932.1:ENST00000540584.2:ENST00000695330.1:ENST00000690233.1:ENST00000695372.1:ENST00000695374.1:ENST00000417045.5:ENST00000537108.5:ENST00000689016.1:ENST00000690097.1:ENST00000534897.5:ENST00000541765.5:ENST00000546129.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	44	2	4.39677	4.773175	5.14958	0.0493212	0.0422707	0.149195	0.146207
chr2	48333801	48333901	793043	0	+	0.39	(0.36,0.39]	chr2	90406	47	INTRON	INTRON	FOXN2	ENSG00000170802.17	ENST00000413569.5:ENST00000340553.8	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.39677	4.773175	5.14958	0.0493212	0.0422707	0.149195	0.146207
chr7	138578439	138578527	3503202	0	+	0.375	(0.36,0.39]	chr7	337582	5	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.39677	4.773175	5.14958	0.0493212	0.0422707	0.149195	0.146207
chr9	19356771	19356871	4130269	0	+	0.39	(0.36,0.39]	chr9	392647	4	SS3_PROX	SS3_PROX:INTRON	DENND4C	ENSG00000137145.21	ENST00000602925.5:ENST00000434457.7:ENST00000380437.8:ENST00000494124.2:ENST00000380427.5:ENST00000361024.6:ENST00000380424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.39677	4.773175	5.14958	0.0493212	0.0422707	0.149195	0.146207
chr7	47358903	47359002	3587380	0	-	0.515152	(0.485,0.523]	chr7	346030	122	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	94	2	3.34812	4.773145	6.19817	0.0117752	0.00723584	0.0743709	0.0565323
chr5	104099373	104099473	2495781	0	+	0.33	(0.29,0.33]	chr5	248648	169	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000514769.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	0	45	2	4.2311	4.77314	5.31518	0.0471437	0.0288318	0.156915	0.116067
chr1	148542862	148542953	582059	0	-	0.450549	(0.45,0.485]	chr1	66908	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF14	ENSG00000270629.7	ENST00000619423.4:ENST00000614999.4:ENST00000621066.4:ENST00000611826.4:ENST00000616120.4:ENST00000621070.4	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.59225	4.7730250000000005	4.9538	0.0569772	0.0259502	0.154343	0.116361
chr13	113587047	113587147	5658870	0	+	0.48	(0.45,0.485]	chr13	555775	8	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.59225	4.7730250000000005	4.9538	0.0569772	0.0259502	0.154343	0.116361
chr8	124662212	124662312	4064279	0	-	0.48	(0.45,0.485]	chr8	387128	429	INTRON	INTRON	MTSS1	ENSG00000170873.19	ENST00000518547.6:ENST00000378017.7:ENST00000325064.9:ENST00000522162.1:ENST00000529463.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.59225	4.7730250000000005	4.9538	0.0569772	0.0259502	0.154343	0.116361
chr14	19277964	19278064	5928138	0	-	0.33	(0.29,0.33]	chr14	580392	82	INTRON	INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	41	2	4.58769	4.773	4.95831	0.0806047	0.0118616	0.177452	0.0746945
chr15	51050475	51050575	6105080	0	+	0.32	(0.29,0.33]	chr15	601269	124	INTRON	INTRON	MIR4713HG	ENSG00000259240.1	ENST00000559909.1	lncRNA	lncRNA	lncRNA	lncRNA	0	41	2	4.58769	4.773	4.95831	0.0806047	0.0118616	0.177452	0.0746945
chr6	101697260	101697360	2962756	0	+	0.33	(0.29,0.33]	chr6	291088	105	INTRON	INTRON	GRIK2	ENSG00000164418.22	ENST00000683774.1:ENST00000421544.6:ENST00000682090.1:ENST00000683215.1:ENST00000369134.9:ENST00000681975.1:ENST00000683903.1:ENST00000682115.1:ENST00000683208.1:ENST00000682222.1:ENST00000684068.1:ENST00000682716.1:ENST00000684279.1:ENST00000682052.1:ENST00000436862.2:ENST00000684027.1:ENST00000682823.1:ENST00000684518.1:ENST00000369138.5:ENST00000413795.5:ENST00000358361.7:ENST00000369137.8:ENST00000683806.1:ENST00000455610.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.58769	4.773	4.95831	0.0806047	0.0118616	0.177452	0.0746945
chrX	52974958	52975057	8043663	0	-	0.50505	(0.485,0.523]	chrX	839375	86	INTRON	INTRON	FAM156A	ENSG00000268350.8	ENST00000611661.4:ENST00000622732.5:ENST00000622323.5:ENST00000612083.5:ENST00000610625.5:ENST00000612915.4:ENST00000615092.4:ENST00000623782.3:ENST00000616592.1:ENST00000619897.4:ENST00000615171.1:ENST00000622430.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	471	2	4.57797	4.772925	4.96788	8.29685e-4	1.5023e-4	0.0171232	0.0036849
chr9	123516099	123516199	4397737	0	-	0.44	(0.419,0.45]	chr9	419652	301	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	133	2	2.94973	4.7728	6.59587	0.0133526	0.00611222	0.0801101	0.0517172
chr12	100578286	100578386	5305866	0	+	0.39	(0.36,0.39]	chr12	516633	3	SS3_PROX	SS3_PROX:INTRON	GAS2L3	ENSG00000139354.11	ENST00000266754.9:ENST00000547754.6:ENST00000547739.1:ENST00000550295.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.30212	4.772645000000001	5.24317	0.0494303	0.0433841	0.160725	0.138813
chr19	34382397	34382497	7243174	0	+	0.39	(0.36,0.39]	chr19	741718	4	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.30212	4.772645000000001	5.24317	0.0494303	0.0433841	0.160725	0.138813
chr8	99216509	99216609	3879246	0	+	0.33	(0.29,0.33]	chr8	371760	231	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000684308.1:ENST00000521932.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.75412	4.7725550000000005	4.79099	0.061706	0.0180435	0.158854	0.0952934
chr16	11008001	11008101	6385943	0	+	0.51	(0.485,0.523]	chr16	631680	43	INTRON	INTRON	CLEC16A	ENSG00000038532.16	ENST00000409790.6:ENST00000409552.4:ENST00000494853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.581	4.772305	4.96361	0.085711	0.0112713	0.181766	0.071709
chr19	56238084	56238184	7408725	0	-	0.49	(0.485,0.523]	chr19	771520	99	INTRON	INTRON	ZSCAN5A	ENSG00000131848.10	ENST00000683990.1:ENST00000587340.5:ENST00000587492.5:ENST00000593106.5:ENST00000592509.5:ENST00000588955.5:ENST00000588442.5:ENST00000592679.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.581	4.772305	4.96361	0.085711	0.0112713	0.181766	0.071709
chr4	73419280	73419367	2057001	0	+	0.402299	(0.39,0.419]	chr4	210280	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ALB	ENSG00000163631.17	ENST00000621628.4:ENST00000295897.9:ENST00000415165.6:ENST00000621085.4:ENST00000503124.5:ENST00000476441.6:ENST00000509063.5:ENST00000401494.7:ENST00000505649.5:ENST00000511370.1:ENST00000486939.1:ENST00000508932.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.39622	4.772225	5.14823	0.0501234	0.042449	0.149195	0.147892
chr10	75493196	75493296	4521090	0	+	0.42	(0.419,0.45]	chr10	432249	416	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	130	2	3.17699	4.77206	6.36713	0.00893106	0.00794315	0.0637469	0.0578938
chr19	15299345	15299445	7342044	0	-	0.44	(0.419,0.45]	chr19	760397	190	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.69033	4.771990000000001	4.85365	0.0958674	0.0197641	0.189038	0.100774
chr4	3361302	3361402	2005049	0	+	0.42	(0.419,0.45]	chr4	204663	179	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.69033	4.771990000000001	4.85365	0.0958674	0.0197641	0.189038	0.100774
chr7	74527441	74527540	3392108	0	+	0.434343	(0.419,0.45]	chr7	327389	29	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6:ENST00000476977.5:ENST00000489094.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.69033	4.771990000000001	4.85365	0.0958674	0.0197641	0.189038	0.100774
chr7	75935107	75935207	3396806	0	+	0.6	(0.58,1]	chr7	328054	118	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000449920.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	114	2	3.10233	4.77196	6.44159	0.00607723	0.00221069	0.0487928	0.0295736
chr10	79240368	79240468	4533765	0	+	0.5	(0.485,0.523]	chr10	432457	237	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.75939	4.771825	4.78426	0.0660335	0.0172254	0.162385	0.0923809
chr13	113329082	113329182	5753221	0	-	0.52	(0.485,0.523]	chr13	564094	26	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.75939	4.771825	4.78426	0.0660335	0.0172254	0.162385	0.0923809
chr4	4549029	4549126	2006785	0	+	0.515464	(0.485,0.523]	chr4	204900	38	INTRON	INTRON	STX18-AS1	ENSG00000247708.8	ENST00000664571.1:ENST00000670162.1:ENST00000656969.1:ENST00000664283.1:ENST00000507244.6:ENST00000663324.1:ENST00000608184.2:ENST00000659678.1:ENST00000653097.1:ENST00000499430.7:ENST00000512438.6:ENST00000610009.5:ENST00000670249.1:ENST00000502693.1:ENST00000665126.1:ENST00000669065.1:ENST00000667824.1:ENST00000655855.1	lncRNA	lncRNA	lncRNA	lncRNA	0	41	2	4.75939	4.771825	4.78426	0.0660335	0.0172254	0.162385	0.0923809
chr6	158034477	158034577	3059842	0	+	0.5	(0.485,0.523]	chr6	297390	4	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.75939	4.771825	4.78426	0.0660335	0.0172254	0.162385	0.0923809
chr7	101483984	101484084	3433204	0	+	0.52	(0.485,0.523]	chr7	332437	358	INTRON	INTRON	COL26A1	ENSG00000160963.14	ENST00000313669.12:ENST00000613501.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.75939	4.771825	4.78426	0.0660335	0.0172254	0.162385	0.0923809
chrX	1447879	1447978	7965972	0	-	0.50505	(0.485,0.523]	chrX	834314	52	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9:ENST00000474865.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.75939	4.771825	4.78426	0.0660335	0.0172254	0.162385	0.0923809
chr13	113333069	113333169	5753261	0	-	0.62	(0.58,1]	chr13	564094	66	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	1	84	2	3.9863	4.771554999999999	5.55681	0.0126042	0.0017591	0.0761905	0.0211077
chr8	118027229	118027329	4048895	0	-	0.38	(0.36,0.39]	chr8	386022	101	INTRON	INTRON	EXT1	ENSG00000182197.13	ENST00000378204.7:ENST00000437196.1:ENST00000436216.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	100	2	4.16956	4.7713149999999995	5.37307	0.0361409	0.00192895	0.127853	0.0224816
chr20	33009183	33009278	7457380	0	+	0.536842	(0.523,0.58]	chr20	776365	1	INTRON	INTRON	BPIFB2	ENSG00000078898.7	ENST00000170150.4	protein_coding	protein_coding	protein_coding	protein_coding	3	333	2	4.29234	4.7709399999999995	5.24954	0.00229541	6.07521e-5	0.0302623	0.00188701
chr19	15644051	15644151	7215394	0	+	0.57	(0.523,0.58]	chr19	737137	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	134	2	4.23665	4.7709	5.30515	0.0059863	0.00509102	0.0508545	0.0433513
chr13	113013064	113013163	5655754	0	+	0.535354	(0.523,0.58]	chr13	555138	107	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.5249	4.770835	5.01677	0.0482765	0.0266135	0.144601	0.118113
chr14	69099180	69099280	6000646	0	-	0.57	(0.523,0.58]	chr14	588817	69	INTRON	INTRON	DCAF5	ENSG00000139990.18	ENST00000341516.10:ENST00000554215.5:ENST00000556847.5:ENST00000557386.5:ENST00000553293.5:ENST00000556111.1:ENST00000389997.10:ENST00000554681.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.5249	4.770835	5.01677	0.0482765	0.0266135	0.144601	0.118113
chr16	19708417	19708516	6561425	0	-	0.555556	(0.523,0.58]	chr16	654285	8	INTRON	INTRON	KNOP1	ENSG00000103550.14	ENST00000219837.12:ENST00000568230.5:ENST00000567367.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.5249	4.770835	5.01677	0.0482765	0.0266135	0.144601	0.118113
chr22	50680510	50680607	7754974	0	+	0.525773	(0.523,0.58]	chr22	812716	7	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.5249	4.770835	5.01677	0.0482765	0.0266135	0.144601	0.118113
chr5	150028782	150028879	2564136	0	+	0.536082	(0.523,0.58]	chr5	254732	13	INTRON	INTRON	HMGXB3	ENSG00000113716.13	ENST00000613459.4:ENST00000503427.5:ENST00000502717.6:ENST00000514469.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.5249	4.770835	5.01677	0.0482765	0.0266135	0.144601	0.118113
chr9	133856584	133856683	4428964	0	-	0.535354	(0.523,0.58]	chr9	423304	219	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.5249	4.770835	5.01677	0.0482765	0.0266135	0.144601	0.118113
chr15	60393540	60393640	6283666	0	-	0.45	(0.419,0.45]	chr15	619324	1	SS3_PROX	SS3_PROX:INTRON	ANXA2	ENSG00000182718.18	ENST00000396024.7:ENST00000559818.6:ENST00000679109.1:ENST00000676687.1:ENST00000558169.6:ENST00000557906.6:ENST00000558558.6:ENST00000559113.6:ENST00000559780.6:ENST00000559956.6:ENST00000560468.6:ENST00000678870.1:ENST00000678061.1:ENST00000678450.1:ENST00000677968.1:ENST00000451270.7:ENST00000558985.6:ENST00000678796.1:ENST00000559647.2:ENST00000332680.8:ENST00000421017.6:ENST00000560466.5:ENST00000558132.5:ENST00000561022.5:ENST00000560367.6:ENST00000558503.6:ENST00000558998.5:ENST00000559559.5:ENST00000560165.5:ENST00000559725.5:ENST00000677258.1:ENST00000559467.5:ENST00000561445.5:ENST00000557937.5:ENST00000557904.5:ENST00000559370.5:ENST00000560546.5:ENST00000557986.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	101	2	3.23773	4.770765	6.3038	0.0178095	0.00990101	0.0943752	0.0671959
chr11	14302130	14302229	4998867	0	-	0.434343	(0.419,0.45]	chr11	483716	59	INTRON	INTRON	RRAS2	ENSG00000133818.14	ENST00000256196.9:ENST00000537760.5:ENST00000529237.5:ENST00000534746.5:ENST00000526063.5:ENST00000532814.5:ENST00000531807.5:ENST00000532950.5:ENST00000531421.5:ENST00000526717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.62273	4.77061	4.91849	0.103601	0.0174488	0.197541	0.0928044
chr18	12430559	12430649	7020148	0	+	0.433333	(0.419,0.45]	chr18	717085	8	INTRON	INTRON	PRELID3A	ENSG00000141391.14	ENST00000336990.8:ENST00000590956.5:ENST00000440960.6:ENST00000589565.1:ENST00000592149.5:ENST00000587735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.62273	4.77061	4.91849	0.103601	0.0174488	0.197541	0.0928044
chr19	19074407	19074507	7225613	0	+	0.43	(0.419,0.45]	chr19	739606	99	INTRON	INTRON	SLC25A42	ENSG00000181035.14	ENST00000318596.8:ENST00000597661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.62273	4.77061	4.91849	0.103601	0.0174488	0.197541	0.0928044
chr6	133966065	133966164	3009135	0	+	0.424242	(0.419,0.45]	chr6	294363	123	INTRON	INTRON	TBPL1	ENSG00000028839.10	ENST00000613034.4:ENST00000416965.5:ENST00000457715.1:ENST00000367871.5:ENST00000237264.9:ENST00000367869.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.62273	4.77061	4.91849	0.103601	0.0174488	0.197541	0.0928044
chr17	57097360	57097458	6759483	0	+	0.357143	(0.33,0.36]	chr17	681961	2	INTRON	INTRON	AKAP1	ENSG00000121057.13	ENST00000575322.1:ENST00000337714.8:ENST00000571629.5:ENST00000621116.4:ENST00000575186.5:ENST00000570423.5:ENST00000573085.1:ENST00000572814.1:ENST00000574683.1:ENST00000572557.5:ENST00000481416.5:ENST00000539273.5:ENST00000576591.1:ENST00000314126.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	119	2	2.79331	4.77053	6.74775	0.0699642	1.66494e-4	0.167594	0.00397356
chr16	18844730	18844829	6560197	0	-	0.424242	(0.419,0.45]	chr16	654007	19	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000563448.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.7549	4.770325	4.78575	0.0888907	0.0224633	0.183874	0.108193
chr8	18997880	18997980	3951979	0	-	0.42	(0.419,0.45]	chr8	377308	576	INTRON	INTRON	PSD3	ENSG00000156011.18	ENST00000327040.13:ENST00000440756.4:ENST00000521475.1:ENST00000521841.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.7549	4.770325	4.78575	0.0888907	0.0224633	0.183874	0.108193
chr18	76391292	76391392	7179032	0	-	0.46	(0.45,0.485]	chr18	730080	106	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	47	2	4.11446	4.770165	5.42587	0.0592571	0.0290571	0.176157	0.116079
chr12	46783229	46783329	5221027	0	+	0.31	(0.29,0.33]	chr12	506670	1308	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2	lncRNA	lncRNA	lncRNA	lncRNA	0	42	2	4.51618	4.770065000000001	5.02395	0.0445554	0.0285091	0.140478	0.123012
chr9	123566955	123567055	4398247	0	-	0.33	(0.29,0.33]	chr9	419658	89	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.51618	4.770065000000001	5.02395	0.0445554	0.0285091	0.140478	0.123012
chr14	31167597	31167697	5952732	0	-	0.43	(0.419,0.45]	chr14	583296	99	INTRON	INTRON	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000691390.1:ENST00000553957.6:ENST00000687002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	97	2	3.4957	4.770055	6.04441	0.0149622	0.0102234	0.0835955	0.0678072
chr3	188422902	188423002	1654491	0	+	0.42	(0.419,0.45]	chr3	173774	162	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000618621.4:ENST00000640853.1:ENST00000494233.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	97	2	3.4957	4.770055	6.04441	0.0149622	0.0102234	0.0835955	0.0678072
chr4	152527774	152527874	2355570	0	-	0.24	[0,0.29]	chr4	235300	380	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	4	163	2	2.63255	4.769575	6.9066	0.00964363	9.22557e-4	0.065748	0.0181216
chr10	47533481	47533581	4680517	0	-	0.53	(0.523,0.58]	chr10	446443	96	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	1	110	2	3.10715	4.769495	6.43184	0.0418959	2.62665e-4	0.136901	0.00552802
chr1	8757734	8757834	395134	0	-	0.34	(0.33,0.36]	chr1	45073	40	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	1	113	2	3.41508	4.769415	6.12375	0.0274458	9.1162e-4	0.112665	0.0133249
chr1	1028334	1028434	998	0	+	0.68	(0.58,1]	chr1	166	55	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	3.52722	4.76928	6.01134	0.00611467	0.00531709	0.0489549	0.047841
chr8	73479457	73479557	3996640	0	-	0.41	(0.39,0.419]	chr8	382414	208	INTRON	INTRON	STAU2	ENSG00000040341.18	ENST00000524300.6:ENST00000522695.5:ENST00000523558.5:ENST00000521210.5	protein_coding	protein_coding	protein_coding	protein_coding	1	116	2	3.39822	4.769195	6.14017	0.0304458	0.00100955	0.118523	0.0142887
chr21	37457806	37457906	7619888	0	+	0.46	(0.45,0.485]	chr21	796063	11	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	2	126	2	3.01201	4.76915	6.52629	0.0100974	0.00466172	0.0674202	0.044542
chr19	7613663	7613760	7199190	0	+	0.556701	(0.523,0.58]	chr19	733913	1	INTRON	INTRON	CAMSAP3	ENSG00000076826.10	ENST00000160298.9:ENST00000446248.4	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	3.51663	4.769	6.02137	0.00992924	0.00782908	0.0671959	0.0574276
chr3	195112652	195112751	1981137	0	-	0.616162	(0.58,1]	chr3	201655	186	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000437101.5:ENST00000473200.1:ENST00000429994.5:ENST00000356740.5:ENST00000418940.5:ENST00000491138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	283	2	4.51752	4.76895	5.02038	0.00209278	1.44267e-5	0.0287557	6.62903e-4
chr7	141699855	141699955	3729410	0	-	0.42	(0.419,0.45]	chr7	358148	128	INTRON	INTRON	DENND11	ENSG00000257093.7	ENST00000536163.6:ENST00000482493.1	protein_coding	protein_coding	protein_coding	protein_coding	1	100	2	3.27753	4.768755	6.25998	0.0163857	0.0106277	0.0910838	0.0698136
chr17	14400470	14400569	6683541	0	+	0.30303	(0.29,0.33]	chr17	670768	29	INTRON	INTRON	ENSG00000230647	ENSG00000230647.2	ENST00000436469.1:ENST00000655690.1	lncRNA	lncRNA	lncRNA	lncRNA	3	320	2	4.48022	4.768715	5.05721	0.00108097	1.73226e-4	0.0198009	0.00409583
chr3	197517256	197517355	1991560	0	-	0.616162	(0.58,1]	chr3	202753	15	INTRON	INTRON	BDH1	ENSG00000161267.12	ENST00000358186.6:ENST00000392378.6:ENST00000392379.6:ENST00000651856.1:ENST00000441275.5:ENST00000479425.5:ENST00000446746.5:ENST00000477015.5:ENST00000434143.5:ENST00000432819.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	44	2	4.18518	4.768660000000001	5.35214	0.0374658	0.0181452	0.139793	0.0921579
chr17	76547400	76547499	6977079	0	-	0.636364	(0.58,1]	chr17	712268	11	INTRON	INTRON	CYGB:ENSG00000267546	ENSG00000161544.10:ENSG00000267546.2	ENST00000589145.1:ENST00000589963.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	86	2	4.18386	4.768000000000001	5.35214	0.0181452	9.90719e-4	0.0921579	0.0141138
chr6	47905034	47905134	3144998	0	-	0.43	(0.419,0.45]	chr6	306778	27	INTRON	INTRON	PTCHD4	ENSG00000244694.8	ENST00000339488.9:ENST00000398738.3:ENST00000679966.1	protein_coding	protein_coding	protein_coding	protein_coding	2	266	2	4.4722	4.767915	5.06363	0.00553452	1.87458e-4	0.0491917	0.00433408
chr17	17736353	17736453	6689399	0	+	0.57	(0.523,0.58]	chr17	671344	118	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.50593	4.7676	5.02927	0.094303	0.0095202	0.188571	0.0650078
chr12	12525759	12525859	5374951	0	-	0.38	(0.36,0.39]	chr12	527102	39	INTRON	INTRON	DUSP16	ENSG00000111266.9	ENST00000298573.9:ENST00000228862.3:ENST00000539940.1:ENST00000541207.1:ENST00000536236.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.48559	4.76754	5.04949	0.0563927	0.036329	0.154188	0.139793
chr12	14473289	14473389	5175687	0	+	0.39	(0.36,0.39]	chr12	503844	63	INTRON	INTRON	ATF7IP	ENSG00000171681.13	ENST00000537653.5:ENST00000261168.9:ENST00000543189.5:ENST00000536444.5:ENST00000544627.5:ENST00000540793.5:ENST00000535179.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.48559	4.76754	5.04949	0.0563927	0.036329	0.154188	0.139793
chr12	121220038	121220136	5341269	0	+	0.377551	(0.36,0.39]	chr12	521600	24	INTRON	INTRON	P2RX4	ENSG00000135124.16	ENST00000359949.11:ENST00000543430.5:ENST00000337233.9:ENST00000543984.5:ENST00000499638.6:ENST00000543318.5:ENST00000540930.5:ENST00000538701.5:ENST00000542067.5:ENST00000541187.5:ENST00000538417.2:ENST00000314442.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.48559	4.76754	5.04949	0.0563927	0.036329	0.154188	0.139793
chr21	43751919	43752017	7624136	0	+	0.571429	(0.523,0.58]	chr21	796773	10	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000498040.5:ENST00000481512.5:ENST00000490666.5:ENST00000467908.1:ENST00000343528.10:ENST00000398078.7:ENST00000468392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	239	2	4.58314	4.7675	4.95186	0.00309221	1.5208e-4	0.0355173	0.00371617
chr13	33916802	33916902	5567617	0	+	0.29	[0,0.29]	chr13	549341	661	INTRON	INTRON	RFC3	ENSG00000133119.13	ENST00000434425.5:ENST00000616236.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.75627	4.767495	4.77872	0.050276	0.0145383	0.148161	0.0836469
chr11	70797042	70797142	5062252	0	-	0.56	(0.523,0.58]	chr11	492701	792	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.68785	4.76677	4.84569	0.0610722	0.0194172	0.158506	0.0994526
chr16	16191646	16191744	6556791	0	-	0.530612	(0.523,0.58]	chr16	653156	9	INTRON	INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.68785	4.76677	4.84569	0.0610722	0.0194172	0.158506	0.0994526
chr11	70763468	70763568	5061916	0	-	0.61	(0.58,1]	chr11	492701	456	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	104	2	3.8171	4.7666900000000005	5.71628	0.0090206	0.00104668	0.0637469	0.0146403
chr5	172373489	172373589	2813044	0	-	0.39	(0.36,0.39]	chr5	275407	3	SS5_PROX	SS5_PROX:INTRON	SH3PXD2B	ENSG00000174705.13	ENST00000636523.1:ENST00000519643.5:ENST00000311601.6	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.64834	4.7666699999999995	4.885	0.0697729	0.0272056	0.167185	0.119337
chr6	82082368	82082468	3190782	0	-	0.39	(0.36,0.39]	chr6	309375	223	INTRON	INTRON	LINC02542	ENSG00000226453.3	ENST00000667666.1:ENST00000663543.1:ENST00000668303.1:ENST00000660637.1:ENST00000668266.1:ENST00000666226.1	lncRNA	lncRNA	lncRNA	lncRNA	0	42	2	4.64834	4.7666699999999995	4.885	0.0697729	0.0272056	0.167185	0.119337
chr6	18446808	18446907	2862772	0	+	0.393939	(0.39,0.419]	chr6	279601	67	INTRON	INTRON	RNF144B	ENSG00000137393.10	ENST00000259939.4	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.48504	4.766595	5.04815	0.0572698	0.0364893	0.154343	0.139793
chr13	113469152	113469252	5753722	0	-	0.49	(0.485,0.523]	chr13	564152	59	INTRON	INTRON	DCUN1D2	ENSG00000150401.15	ENST00000478244.6:ENST00000332592.7:ENST00000375403.6:ENST00000438545.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	112	2	3.62547	4.766579999999999	5.90769	0.0178931	0.0011708	0.0918433	0.0157899
chr21	45479401	45479501	7631068	0	+	0.5	(0.485,0.523]	chr21	797701	1	SS3_PROX	SS3_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	1	109	2	3.32827	4.766534999999999	6.2048	0.0294165	5.23665e-4	0.116079	0.0090184
chr2	55023787	55023887	1148265	0	-	0.42	(0.419,0.45]	chr2	125466	94	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	2	130	2	3.10514	4.766475	6.42781	0.00938681	0.0080847	0.064735	0.0602118
chr7	23381121	23381221	3552309	0	-	0.43	(0.419,0.45]	chr7	343200	181	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	97	2	3.90437	4.76621	5.62805	0.0280406	0.00396391	0.113651	0.0368027
chr10	119324715	119324815	4594494	0	+	0.51	(0.485,0.523]	chr10	439167	1117	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.50634	4.7660350000000005	5.02573	0.0939553	0.00985879	0.188571	0.0664239
chr12	109964437	109964535	5495529	0	-	0.5	(0.485,0.523]	chr12	540752	24	INTRON	INTRON	GIT2	ENSG00000139436.22	ENST00000355312.8:ENST00000361006.9:ENST00000457474.6:ENST00000553118.5:ENST00000551209.5:ENST00000550186.5:ENST00000547815.5:ENST00000320063.10:ENST00000551455.5:ENST00000551721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.50634	4.7660350000000005	5.02573	0.0939553	0.00985879	0.188571	0.0664239
chr10	103822635	103822735	4758331	0	-	0.46	(0.45,0.485]	chr10	454819	209	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.41963	4.765965	5.1123	0.0458344	0.0355247	0.142336	0.137983
chr2	144806410	144806510	907851	0	+	0.33	(0.29,0.33]	chr2	102183	54	INTRON	INTRON	TEX41	ENSG00000226674.11	ENST00000654442.1:ENST00000653533.1:ENST00000661187.1:ENST00000654298.1:ENST00000670681.1:ENST00000667984.1:ENST00000666890.1:ENST00000597655.6:ENST00000598659.5:ENST00000659773.1:ENST00000660169.1:ENST00000668424.1:ENST00000631271.3:ENST00000671290.1:ENST00000670099.1:ENST00000671637.1:ENST00000666650.1:ENST00000626325.3:ENST00000656353.1:ENST00000656881.1:ENST00000668319.1:ENST00000668441.1:ENST00000670869.1:ENST00000661327.1:ENST00000600679.5:ENST00000601277.5:ENST00000625887.2:ENST00000628688.2:ENST00000629613.3:ENST00000628985.2:ENST00000665226.1:ENST00000660660.1:ENST00000665824.1:ENST00000666917.1:ENST00000658352.1:ENST00000659810.1:ENST00000662271.1:ENST00000666949.1:ENST00000653910.1:ENST00000653630.1:ENST00000657732.1:ENST00000652981.1:ENST00000661482.1:ENST00000655187.1:ENST00000625651.2:ENST00000599072.6:ENST00000599187.6:ENST00000628136.3:ENST00000631167.3:ENST00000656317.1:ENST00000656937.1:ENST00000661920.1:ENST00000665244.1:ENST00000669172.1:ENST00000625362.3:ENST00000594471.5:ENST00000597469.5:ENST00000598248.5:ENST00000596230.5:ENST00000596540.5:ENST00000445791.5:ENST00000654410.1:ENST00000664679.1:ENST00000451027.5:ENST00000666980.1:ENST00000666180.1:ENST00000659777.1:ENST00000660827.1:ENST00000431734.5:ENST00000595686.5:ENST00000657187.1:ENST00000663282.1:ENST00000670002.1:ENST00000626197.2:ENST00000653186.1:ENST00000657526.1:ENST00000629631.2:ENST00000666675.1:ENST00000627991.3:ENST00000657684.1:ENST00000662863.1:ENST00000664258.1:ENST00000664937.1:ENST00000665081.1:ENST00000667704.1:ENST00000667781.1:ENST00000667905.1:ENST00000668187.1:ENST00000669646.1:ENST00000597670.5:ENST00000600064.5:ENST00000660009.1:ENST00000654361.1:ENST00000657624.1:ENST00000655563.1:ENST00000661697.1:ENST00000669793.1:ENST00000653941.1:ENST00000670125.1:ENST00000664649.1:ENST00000660904.1:ENST00000627675.2:ENST00000414256.5:ENST00000451774.5:ENST00000630651.2:ENST00000627195.2:ENST00000630122.2:ENST00000630691.2:ENST00000626411.2:ENST00000626133.2:ENST00000627757.2:ENST00000596589.5:ENST00000597893.5:ENST00000630709.2:ENST00000630246.2:ENST00000594626.5:ENST00000628213.2:ENST00000625671.2	lncRNA	lncRNA	lncRNA	lncRNA	0	41	2	4.67908	4.765965	4.85285	0.0567079	0.0209202	0.154343	0.102931
chr6	34909583	34909683	2900715	0	+	0.47	(0.45,0.485]	chr6	284492	196	INTRON	INTRON	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1:ENST00000650178.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.41963	4.765965	5.1123	0.0458344	0.0355247	0.142336	0.137983
chr5	59829110	59829210	2672432	0	-	0.41	(0.39,0.419]	chr5	264372	316	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000502484.6:ENST00000405053.7:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	42	2	4.64779	4.765725	4.88366	0.0707789	0.0273358	0.168159	0.119337
chr1	157013537	157013637	603881	0	-	0.42	(0.419,0.45]	chr1	71589	270	INTRON	INTRON	ARHGEF11	ENSG00000132694.19	ENST00000368194.8:ENST00000361409.2	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.7145	4.765605	4.81671	0.08258	0.0256236	0.179396	0.115966
chr10	122953418	122953514	4778016	0	-	0.447917	(0.419,0.45]	chr10	456843	4	SS3_PROX	SS3_PROX:INTRON	C10orf88	ENSG00000119965.13	ENST00000481909.2:ENST00000368891.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.7145	4.765605	4.81671	0.08258	0.0256236	0.179396	0.115966
chr16	29275211	29275311	6433589	0	+	0.42	(0.419,0.45]	chr16	636745	231	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	42	2	4.7145	4.765605	4.81671	0.08258	0.0256236	0.179396	0.115966
chr20	3540735	3540835	7420260	0	+	0.35	(0.33,0.36]	chr20	772917	4	SS5_PROX	SS5_PROX:INTRON	ATRN	ENSG00000088812.18	ENST00000262919.10:ENST00000446916.2	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.57958	4.765605	4.95163	0.0583482	0.0288057	0.155373	0.123764
chr3	58335122	58335222	1485569	0	+	0.43	(0.419,0.45]	chr3	159950	11	INTRON	INTRON	PXK	ENSG00000168297.16	ENST00000302779.9:ENST00000468776.5:ENST00000383716.7:ENST00000356151.7:ENST00000463280.5:ENST00000383715.8:ENST00000484288.5:ENST00000479241.5:ENST00000477308.5:ENST00000491164.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.7145	4.765605	4.81671	0.08258	0.0256236	0.179396	0.115966
chr4	84875208	84875308	2273928	0	-	0.54	(0.523,0.58]	chr4	229353	142	INTRON	INTRON	WDFY3	ENSG00000163625.16	ENST00000295888.9:ENST00000426414.6:ENST00000509172.1:ENST00000502713.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	110	2	3.49363	4.765595	6.03756	0.0224494	7.92905e-4	0.102751	0.0120621
chr7	6701307	6701405	3542726	0	-	0.44898	(0.419,0.45]	chr7	342318	5	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	1	96	2	3.77132	4.765535	5.75975	0.0231013	0.00544312	0.102982	0.0454065
chr8	38768195	38768295	3802237	0	+	0.51	(0.485,0.523]	chr8	365828	104	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	110	2	3.07952	4.765285	6.45105	0.0436257	2.61322e-4	0.139286	0.00551565
chr14	68901978	68902077	5999361	0	-	0.50505	(0.485,0.523]	chr14	588711	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6:ENST00000683261.1:ENST00000684096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.68434	4.765225	4.84611	0.0608067	0.0200045	0.158506	0.100864
chr16	16003121	16003221	6406535	0	+	0.5	(0.485,0.523]	chr16	633005	530	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.68434	4.765225	4.84611	0.0608067	0.0200045	0.158506	0.100864
chr2	239336992	239337092	1392080	0	-	0.5	(0.485,0.523]	chr2	148752	125	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.68434	4.765225	4.84611	0.0608067	0.0200045	0.158506	0.100864
chr6	20645095	20645195	2865047	0	+	0.52	(0.485,0.523]	chr6	279710	856	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.68434	4.765225	4.84611	0.0608067	0.0200045	0.158506	0.100864
chr8	67337463	67337563	3992176	0	-	0.49	(0.485,0.523]	chr8	382089	346	INTRON	INTRON	ARFGEF1	ENSG00000066777.9	ENST00000262215.8:ENST00000519436.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.68434	4.765225	4.84611	0.0608067	0.0200045	0.158506	0.100864
chr20	46649010	46649110	7568982	0	-	0.47	(0.45,0.485]	chr20	790913	349	INTRON	INTRON	SLC13A3	ENSG00000158296.14	ENST00000290317.9:ENST00000279027.9:ENST00000472148.5:ENST00000413164.6:ENST00000468915.5:ENST00000372121.5:ENST00000417157.2	protein_coding	protein_coding	protein_coding	protein_coding	1	93	2	3.9881	4.7649799999999995	5.54186	0.0243502	0.0026335	0.106588	0.0278798
chr1	27489585	27489685	431247	0	-	0.5	(0.485,0.523]	chr1	50974	2	SS5_PROX	SS5_PROX:INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	1	96	2	3.21778	4.76496	6.31214	0.0157761	0.00589975	0.0884237	0.0506158
chr13	29552262	29552362	5677539	0	-	0.31	(0.29,0.33]	chr13	557653	157	INTRON	INTRON	SLC7A1	ENSG00000139514.13	ENST00000380752.10:ENST00000450494.1	protein_coding	protein_coding	protein_coding	protein_coding	2	236	2	4.48717	4.76481	5.04245	0.00341089	1.26845e-4	0.0374152	0.00326785
chr2	26245341	26245441	731882	0	+	0.53	(0.523,0.58]	chr2	85248	7	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	HADHB	ENSG00000138029.14	ENST00000448743.5:ENST00000537713.5:ENST00000479347.1:ENST00000405867.7:ENST00000317799.10:ENST00000425035.5:ENST00000412805.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	109	2	3.37594	4.764805	6.15367	0.0272868	5.76607e-4	0.112327	0.00963379
chr1	213990480	213990580	339380	0	+	0.57	(0.523,0.58]	chr1	38089	3	INTRON	INTRON	PROX1	ENSG00000117707.16	ENST00000471129.1:ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2:ENST00000607425.1	protein_coding	protein_coding	protein_coding	protein_coding	2	121	2	3.50802	4.764695	6.02137	0.00992924	0.00264792	0.0671959	0.027979
chr14	103105072	103105172	5921869	0	+	0.79	(0.58,1]	chr14	579219	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	331	2	4.53295	4.764614999999999	4.99628	7.19051e-4	3.41825e-5	0.0158237	0.00124341
chr17	15498771	15498871	6860424	0	-	0.48	(0.45,0.485]	chr17	695075	232	INTRON	INTRON	TVP23C-CDRT4:CDRT4	ENSG00000259024.6:ENSG00000239704.11	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.64346	4.764565	4.88567	0.0850039	0.0146126	0.181766	0.0837727
chr3	13195726	13195826	1691099	0	-	0.47	(0.45,0.485]	chr3	176566	312	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.64346	4.764565	4.88567	0.0850039	0.0146126	0.181766	0.0837727
chr9	36216255	36216355	4146215	0	+	0.46	(0.45,0.485]	chr9	394483	43	INTRON	INTRON	CLTA	ENSG00000122705.17	ENST00000464497.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	41	2	4.64346	4.764565	4.88567	0.0850039	0.0146126	0.181766	0.0837727
chr12	53006896	53006996	5234221	0	+	0.69	(0.58,1]	chr12	508316	4	SS5_PROX	SS5_PROX:INTRON	EIF4B	ENSG00000063046.18	ENST00000551527.5:ENST00000549077.5:ENST00000549645.5:ENST00000262056.14:ENST00000420463.7:ENST00000551002.5:ENST00000416762.7:ENST00000550704.5:ENST00000549481.5:ENST00000552490.5:ENST00000550390.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.58025	4.764535	4.94882	0.0354433	0.0172566	0.127188	0.0923809
chr21	43904618	43904718	7624825	0	+	0.69	(0.58,1]	chr21	796895	2	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.58025	4.764535	4.94882	0.0354433	0.0172566	0.127188	0.0923809
chr6	117582356	117582455	3242180	0	-	0.50505	(0.485,0.523]	chr6	314277	29	INTRON	INTRON	GOPC	ENSG00000047932.14	ENST00000052569.10:ENST00000368498.7:ENST00000535237.2	protein_coding	protein_coding	protein_coding	protein_coding	1	92	2	3.4289	4.76447	6.10004	0.00977282	0.00860355	0.0664239	0.0623467
chr12	110381651	110381751	5496442	0	-	0.48	(0.45,0.485]	chr12	540890	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ANAPC7	ENSG00000196510.14	ENST00000455511.9:ENST00000552087.1:ENST00000450008.3:ENST00000471602.6:ENST00000548234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.7111	4.76441	4.81772	0.0781398	0.0167663	0.175203	0.0917029
chr15	40163053	40163153	6079434	0	+	0.47	(0.45,0.485]	chr15	597350	14	INTRON	INTRON	BUB1B	ENSG00000156970.13	ENST00000560120.5:ENST00000559414.5:ENST00000412359.7:ENST00000558715.5:ENST00000287598.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.7111	4.76441	4.81772	0.0781398	0.0167663	0.175203	0.0917029
chr15	98770632	98770732	6194552	0	+	0.46	(0.45,0.485]	chr15	609663	355	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1:ENST00000557938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	41	2	4.7111	4.76441	4.81772	0.0781398	0.0167663	0.175203	0.0917029
chr12	132538044	132538144	5352996	0	+	0.71	(0.58,1]	chr12	523670	97	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	83	2	3.79235	4.7641849999999994	5.73602	0.00904546	0.00302484	0.0637469	0.0305643
chr1	8680795	8680895	394362	0	-	0.45	(0.419,0.45]	chr1	45065	240	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000468247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.29342	4.763745	5.23407	0.0526662	0.0486006	0.167062	0.145074
chr17	42237129	42237228	6903471	0	-	0.434343	(0.419,0.45]	chr17	702203	46	INTRON	INTRON	STAT5B	ENSG00000173757.10	ENST00000293328.8:ENST00000468312.1:ENST00000415845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	45	2	4.29342	4.763745	5.23407	0.0526662	0.0486006	0.167062	0.145074
chr9	6899426	6899526	4116372	0	+	0.42	(0.419,0.45]	chr9	391891	58	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000438023.5:ENST00000381306.7:ENST00000381309.8:ENST00000543771.5:ENST00000496464.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.29342	4.763745	5.23407	0.0526662	0.0486006	0.167062	0.145074
chr6	36680569	36680665	2906395	0	+	0.729167	(0.58,1]	chr6	285238	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	CDKN1A	ENSG00000124762.14	ENST00000615513.4:ENST00000448526.6:ENST00000459970.1:ENST00000405375.5:ENST00000244741.10:ENST00000373711.3:ENST00000478800.1:ENST00000462537.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	111	2	3.48788	4.763405	6.03893	0.00503456	0.00208277	0.0464858	0.0237357
chr22	46290864	46290957	7743259	0	+	0.537634	(0.523,0.58]	chr22	811892	6	INTRON	INTRON	TTC38	ENSG00000075234.17	ENST00000381031.8:ENST00000451998.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	723	2	3.91742	4.763395	5.60937	2.06592e-4	1.49971e-4	0.00681825	0.00462247
chr14	35314953	35315053	5780584	0	+	0.43	(0.419,0.45]	chr14	566696	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ENSG00000258790:PSMA6	ENSG00000258790.1:ENSG00000100902.11	ENST00000557565.1:ENST00000540871.5:ENST00000622405.4:ENST00000554541.5:ENST00000261479.9:ENST00000554961.5:ENST00000553809.5:ENST00000555764.5:ENST00000556506.1:ENST00000556221.1:ENST00000554457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	129	2	3.22297	4.7633849999999995	6.3038	0.00990101	0.00712864	0.0671959	0.0541241
chr8	102382803	102382903	4031890	0	-	0.42	(0.419,0.45]	chr8	385211	208	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	1	96	2	3.56166	4.763205	5.96475	0.0169309	0.00882182	0.088829	0.061625
chr6	140784333	140784433	3279574	0	-	0.29	[0,0.29]	chr6	317145	1205	INTRON	INTRON	ENSG00000234147	ENSG00000234147.3	ENST00000650553.2	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.54275	4.762895	4.98304	0.0681032	0.00935344	0.164448	0.0646157
chr22	46920040	46920140	7746595	0	+	0.36	(0.33,0.36]	chr22	812232	62	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	151	2	3.15975	4.7626	6.36545	0.00644852	0.00438789	0.0530227	0.0393658
chr6	35885224	35885324	3127773	0	-	0.39	(0.36,0.39]	chr6	304964	105	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	115	2	3.11066	4.762335	6.41401	0.0465988	4.90006e-4	0.143232	0.00861813
chr3	172091581	172091681	1627983	0	+	0.34	(0.33,0.36]	chr3	170535	443	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	706	2	3.82401	4.7623	5.70059	0.00296268	5.15789e-6	0.0346628	3.22865e-4
chr22	31450760	31450860	7787772	0	-	0.28	[0,0.29]	chr22	817089	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EIF4ENIF1	ENSG00000184708.18	ENST00000344710.9:ENST00000495101.5:ENST00000330125.10:ENST00000397525.5:ENST00000397523.5:ENST00000418321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.70363	4.762295	4.82096	0.0456837	0.0169854	0.142336	0.0923809
chr8	73646970	73647070	3998331	0	-	0.29	[0,0.29]	chr8	382473	292	INTRON	INTRON	STAU2	ENSG00000040341.18	ENST00000524300.6:ENST00000522695.5:ENST00000523558.5:ENST00000521210.5:ENST00000355780.9:ENST00000519961.5:ENST00000521727.5:ENST00000521451.5:ENST00000522509.5:ENST00000517542.5:ENST00000518981.5:ENST00000518767.5:ENST00000518502.5:ENST00000521293.5:ENST00000521447.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.70363	4.762295	4.82096	0.0456837	0.0169854	0.142336	0.0923809
chr1	21342638	21342738	419319	0	-	0.55	(0.523,0.58]	chr1	48854	438	INTRON	INTRON	ECE1	ENSG00000117298.16	ENST00000415912.6:ENST00000649812.1:ENST00000463334.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	46	2	4.13061	4.76194	5.39327	0.0533354	0.0277354	0.167062	0.112851
chr8	130276741	130276841	4081961	0	-	0.43	(0.419,0.45]	chr8	388157	298	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000521075.5:ENST00000524367.5:ENST00000520927.5:ENST00000524299.1:ENST00000521426.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	117	2	3.18837	4.761895	6.33542	0.0439311	6.85495e-4	0.139875	0.0108846
chr16	75241871	75241969	6644533	0	-	0.632653	(0.58,1]	chr16	664425	34	INTRON	INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10:ENST00000569340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	83	2	3.72143	4.761665	5.8019	0.007984	0.00366718	0.0596361	0.0346803
chr2	239370502	239370602	1392417	0	-	0.62	(0.58,1]	chr2	148759	172	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	83	2	3.72143	4.761665	5.8019	0.007984	0.00366718	0.0596361	0.0346803
chr7	22138454	22138552	3547980	0	-	0.479592	(0.45,0.485]	chr7	342865	11	INTRON	INTRON	RAPGEF5	ENSG00000136237.19	ENST00000665637.1:ENST00000401957.6:ENST00000344041.10:ENST00000620335.4	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.22352	4.761625	5.29973	0.0496712	0.035042	0.160725	0.12704
chr9	123884517	123884617	4401439	0	-	0.46	(0.45,0.485]	chr9	419733	51	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.22352	4.761625	5.29973	0.0496712	0.035042	0.160725	0.12704
chr5	176460498	176460598	2595939	0	+	0.46	(0.45,0.485]	chr5	257577	64	INTRON	INTRON	FAF2	ENSG00000113194.13	ENST00000510730.5:ENST00000261942.7:ENST00000510446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	152	2	2.91492	4.76162	6.60832	0.0309395	2.02062e-4	0.119739	0.00457229
chr21	34842699	34842799	7655371	0	-	0.47	(0.45,0.485]	chr21	801030	77	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000469087.1:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.5725	4.7615300000000005	4.95056	0.0926859	0.0127826	0.188571	0.0773423
chr3	171609384	171609483	1956507	0	-	0.393939	(0.39,0.419]	chr3	198911	36	INTRON	INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9	protein_coding	protein_coding	protein_coding	protein_coding	1	96	2	3.41977	4.761395	6.10302	0.0120635	0.0116434	0.0745226	0.0736274
chr8	141000179	141000279	4093133	0	-	0.6	(0.58,1]	chr8	388934	157	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	84	2	3.56821	4.761375	5.95454	0.0059453	0.00550024	0.0506158	0.0454065
chr7	90412228	90412312	3411336	0	+	0.440476	(0.419,0.45]	chr7	329444	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLDN12	ENSG00000157224.16	ENST00000416322.5:ENST00000287916.8:ENST00000462636.5:ENST00000394604.5:ENST00000496677.6:ENST00000394605.2:ENST00000498033.5:ENST00000483862.5:ENST00000427904.1:ENST00000451941.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	109	2	4.43095	4.76114	5.09133	0.0586308	0.00105051	0.155565	0.0146865
chr5	76404531	76404631	2457142	0	+	0.48	(0.45,0.485]	chr5	245474	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	IQGAP2	ENSG00000145703.17	ENST00000274364.11:ENST00000692467.1:ENST00000514350.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.74641	4.7610600000000005	4.77571	0.0719884	0.0193126	0.168159	0.0994526
chr3	30636646	30636746	1433393	0	+	0.43	(0.419,0.45]	chr3	153006	34	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4:ENST00000673250.1:ENST00000672866.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	988	2	4.17588	4.761035	5.34619	4.93489e-4	9.30806e-5	0.0128976	0.0025959
chr1	101021765	101021863	552586	0	-	0.418367	(0.39,0.419]	chr1	63437	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DPH5	ENSG00000117543.22	ENST00000370109.8:ENST00000370105.7:ENST00000427040.3:ENST00000690716.1:ENST00000488789.5:ENST00000481871.5:ENST00000464270.5:ENST00000342173.11:ENST00000466807.5:ENST00000477293.5:ENST00000498372.5:ENST00000488176.1:ENST00000490732.5:ENST00000476507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	346	2	4.70919	4.760935	4.81268	0.00269463	1.25308e-4	0.0329385	0.00324328
chr12	50643046	50643146	5230840	0	+	0.28	[0,0.29]	chr12	507719	18	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5:ENST00000546719.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	87	2	3.60297	4.76077	5.91857	0.00698542	0.00592276	0.0555241	0.047889
chr17	17749846	17749946	6689534	0	+	0.42	(0.419,0.45]	chr17	671344	253	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	1	96	2	3.52905	4.760425	5.9918	0.0162379	0.00949141	0.0873195	0.0650078
chr19	4335534	4335633	7312826	0	-	0.484848	(0.45,0.485]	chr19	754660	11	INTRON	INTRON	STAP2	ENSG00000178078.12	ENST00000594605.6:ENST00000600324.5:ENST00000599736.5:ENST00000601482.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	115	2	3.65973	4.760395	5.86106	0.0180534	0.00153611	0.0921579	0.0191553
chr15	78450453	78450553	6158241	0	+	0.56	(0.523,0.58]	chr15	606043	102	INTRON	INTRON	IREB2	ENSG00000136381.13	ENST00000560840.5:ENST00000559215.5:ENST00000258886.13:ENST00000558525.5:ENST00000560440.5:ENST00000558570.5:ENST00000560454.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	90	2	3.55341	4.760075	5.96674	0.0109075	0.00716661	0.0707085	0.0541871
chr4	856295	856393	2178147	0	-	0.622449	(0.58,1]	chr4	220550	26	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5:ENST00000511980.5:ENST00000510799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	83	2	3.9245	4.759485	5.59447	0.0117666	0.00209574	0.0737098	0.0238576
chr11	47806447	47806515	5037734	0	-	0.308824	(0.29,0.33]	chr11	487897	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NUP160	ENSG00000030066.14	ENST00000694866.1:ENST00000378460.7:ENST00000530326.5:ENST00000528071.5:ENST00000526569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	91	2	3.96065	4.75901	5.55737	0.0196268	0.0026983	0.095549	0.0283941
chr12	120689122	120689222	5340479	0	+	0.44	(0.419,0.45]	chr12	521449	12	INTRON	INTRON	MLEC	ENSG00000110917.8	ENST00000228506.8:ENST00000412616.2	protein_coding	protein_coding	protein_coding	protein_coding	2	132	2	2.92212	4.758995	6.59587	0.0141969	0.00611222	0.0833845	0.0517172
chr4	3367983	3368083	2005116	0	+	0.51	(0.485,0.523]	chr4	204663	246	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	90	2	3.8948	4.758900000000001	5.623	0.0192139	0.00310434	0.095424900000000007	0.0311614
chr14	105342127	105342227	5926622	0	+	0.45	(0.419,0.45]	chr14	580042	51	INTRON	INTRON	PACS2	ENSG00000179364.15	ENST00000430725.6:ENST00000325438.12:ENST00000447393.6:ENST00000685365.1:ENST00000686173.1:ENST00000547217.5:ENST00000686461.1:ENST00000548265.1:ENST00000689240.1:ENST00000546915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.47684	4.758635	5.04043	0.0625897	0.0389508	0.160305	0.142578
chr3	196904277	196904360	1667843	0	+	0.421687	(0.419,0.45]	chr3	174897	3	INTRON	INTRON	SENP5	ENSG00000119231.11	ENST00000445299.6:ENST00000323460.10:ENST00000419026.5:ENST00000489744.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.47684	4.758635	5.04043	0.0625897	0.0389508	0.160305	0.142578
chr7	7778238	7778337	3317313	0	+	0.444444	(0.419,0.45]	chr7	321721	54	INTRON	INTRON	UMAD1	ENSG00000219545.12	ENST00000682710.1:ENST00000463725.5:ENST00000638342.1:ENST00000636849.1:ENST00000639343.1:ENST00000639110.1:ENST00000482067.3:ENST00000406829.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.47684	4.758635	5.04043	0.0625897	0.0389508	0.160305	0.142578
chr15	38310043	38310143	6077308	0	+	0.35	(0.33,0.36]	chr15	596955	101	INTRON	INTRON	SPRED1	ENSG00000166068.13	ENST00000299084.9:ENST00000561205.1:ENST00000561317.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.40703	4.7585750000000004	5.11012	0.04702	0.0390931	0.143232	0.142605
chr11	70876617	70876717	5063053	0	-	0.46	(0.45,0.485]	chr11	492728	36	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000645599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.50852	4.758554999999999	5.00859	0.052901	0.0302873	0.14912	0.126768
chr14	31162800	31162899	5952684	0	-	0.484848	(0.45,0.485]	chr14	583296	51	INTRON	INTRON	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000691390.1:ENST00000553957.6:ENST00000687002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.50852	4.758554999999999	5.00859	0.052901	0.0302873	0.14912	0.126768
chr18	79358953	79359053	7099875	0	+	0.47	(0.45,0.485]	chr18	722964	2	SS3_PROX	SS3_PROX:INTRON	ATP9B	ENSG00000166377.21	ENST00000426216.6:ENST00000307671.12:ENST00000490210.6:ENST00000590477.5:ENST00000589951.5:ENST00000588921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.50852	4.758554999999999	5.00859	0.052901	0.0302873	0.14912	0.126768
chr2	233173224	233173323	1058365	0	+	0.484848	(0.45,0.485]	chr2	115144	17	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493632.5:ENST00000465281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.50852	4.758554999999999	5.00859	0.052901	0.0302873	0.14912	0.126768
chr3	187059928	187060027	1651592	0	+	0.474747	(0.45,0.485]	chr3	173700	82	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000676633.1:ENST00000448044.5:ENST00000416235.6:ENST00000448449.1:ENST00000442023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.50852	4.758554999999999	5.00859	0.052901	0.0302873	0.14912	0.126768
chr17	38403599	38403698	6729062	0	+	0.494949	(0.485,0.523]	chr17	676274	42	UTR3	UTR3:EXON_MRNA	SOCS7	ENSG00000274211.6	ENST00000612932.6:ENST00000665913.1	protein_coding	protein_coding	protein_coding	protein_coding	1	90	2	3.57804	4.75855	5.93906	0.0113657	0.00685872	0.0723462	0.0526888
chr8	28891484	28891584	3785493	0	+	0.52	(0.485,0.523]	chr8	364667	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000558662.5:ENST00000519662.5:ENST00000397358.7:ENST00000560599.5:ENST00000523613.5:ENST00000560357.5:ENST00000521516.5:ENST00000519047.5:ENST00000560269.1:ENST00000355231.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	90	2	3.57804	4.75855	5.93906	0.0113657	0.00685872	0.0723462	0.0526888
chr20	25494684	25494783	7539900	0	-	0.636364	(0.58,1]	chr20	787018	28	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5:ENST00000461642.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	136	2	3.17288	4.758375	6.34387	0.0137455	1.61506e-4	0.0800798	0.00387712
chr12	26769058	26769158	5400960	0	-	0.53	(0.523,0.58]	chr12	528735	429	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000545235.1:ENST00000242737.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	148	2	2.85171	4.75833	6.66495	0.032571	1.32802e-4	0.122289	0.00337193
chr3	60222330	60222430	1795830	0	-	0.44	(0.419,0.45]	chr3	186807	1416	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	1	99	2	4.07217	4.758319999999999	5.44447	0.0364384	0.00262794	0.128173	0.027842
chr1	91744926	91745026	526398	0	-	0.42	(0.419,0.45]	chr1	61884	96	INTRON	INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000468996.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	104	2	4.28238	4.7582249999999995	5.23407	0.0486006	0.00154487	0.145074	0.0192502
chr1	235380149	235380249	364670	0	+	0.43	(0.419,0.45]	chr1	41197	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TBCE	ENSG00000285053.1:ENSG00000284770.2	ENST00000644055.1:ENST00000645655.1:ENST00000647428.1:ENST00000643418.1:ENST00000646624.1:ENST00000647186.1:ENST00000646528.1:ENST00000645351.1:ENST00000643410.1:ENST00000645205.1:ENST00000645836.1:ENST00000642503.1:ENST00000646281.1:ENST00000645069.1:ENST00000644680.1:ENST00000643758.1:ENST00000645578.1:ENST00000642431.1:ENST00000644604.1:ENST00000651186.1:ENST00000643125.1:ENST00000406207.5:ENST00000642463.1:ENST00000645899.1:ENST00000647233.1:ENST00000642926.1:ENST00000644578.1:ENST00000647418.1:ENST00000645372.1:ENST00000645582.1:ENST00000643994.1:ENST00000647407.1:ENST00000642610.2:ENST00000644037.1:ENST00000646463.1:ENST00000366601.8:ENST00000643524.1:ENST00000646536.1:ENST00000643142.1:ENST00000644838.1:ENST00000646286.1:ENST00000646186.1:ENST00000643615.1:ENST00000543662.4:ENST00000646848.1:ENST00000647332.1:ENST00000647489.1:ENST00000644625.1:ENST00000646384.1:ENST00000645551.1:ENST00000646821.1:ENST00000472011.6:ENST00000643238.1:ENST00000646104.1:ENST00000645662.1:ENST00000643993.1:ENST00000645964.1:ENST00000642339.1:ENST00000644217.1:ENST00000642372.1:ENST00000646929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.63955	4.757765	4.87598	0.0768574	0.0293406	0.174882	0.125102
chr2	239085326	239085426	1389528	0	-	0.45	(0.419,0.45]	chr2	148606	1	PRIMIRNA	PRIMIRNA:INTRON	HDAC4:MIR4441	ENSG00000068024.18:ENSG00000264810.1	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000487617.5:ENST00000582623.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	0	42	2	4.63955	4.757765	4.87598	0.0768574	0.0293406	0.174882	0.125102
chr22	36512847	36512929	7807797	0	-	0.439024	(0.419,0.45]	chr22	818255	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EIF3D	ENSG00000100353.18	ENST00000216190.13:ENST00000462641.1:ENST00000405442.5:ENST00000426531.5:ENST00000458572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.63955	4.757765	4.87598	0.0768574	0.0293406	0.174882	0.125102
chr8	18579081	18579181	3947756	0	-	0.45	(0.419,0.45]	chr8	377179	34	INTRON	INTRON	PSD3	ENSG00000156011.18	ENST00000327040.13:ENST00000440756.4:ENST00000286485.12:ENST00000523619.5:ENST00000428502.6:ENST00000518315.5:ENST00000521878.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.63955	4.757765	4.87598	0.0768574	0.0293406	0.174882	0.125102
chr8	73626028	73626128	3998121	0	-	0.43	(0.419,0.45]	chr8	382473	82	INTRON	INTRON	STAU2	ENSG00000040341.18	ENST00000524300.6:ENST00000522695.5:ENST00000523558.5:ENST00000521210.5:ENST00000355780.9:ENST00000519961.5:ENST00000521727.5:ENST00000521451.5:ENST00000522509.5:ENST00000517542.5:ENST00000518981.5:ENST00000518767.5:ENST00000518502.5:ENST00000521293.5:ENST00000521447.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.63955	4.757765	4.87598	0.0768574	0.0293406	0.174882	0.125102
chr3	30612666	30612766	1433152	0	+	0.4	(0.39,0.419]	chr3	152992	53	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4	protein_coding	protein_coding	protein_coding	protein_coding	2	134	2	3.74786	4.757715	5.76757	0.0204917	0.00182261	0.0979776	0.021657
chr17	38728695	38728795	6729370	0	+	0.63	(0.58,1]	chr17	676371	32	UTR3	UTR3:EXON_MRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5	protein_coding	protein_coding	protein_coding	protein_coding	5	455	2	4.34412	4.7575400000000005	5.17096	6.88665e-4	8.46637e-6	0.0154526	4.56613e-4
chr11	2973465	2973563	4972622	0	-	0.479592	(0.45,0.485]	chr11	481274	8	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	3.73402	4.757490000000001	5.78096	0.0166968	0.0049945	0.0884836	0.0428203
chr2	239291169	239291269	1391620	0	-	0.57	(0.523,0.58]	chr2	148740	396	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	110	2	3.01567	4.757455	6.49924	0.0482042	2.16101e-4	0.144601	0.00477041
chr3	37927620	37927720	1443920	0	+	0.26	[0,0.29]	chr3	153963	154	INTRON	INTRON	CTDSPL	ENSG00000144677.15	ENST00000273179.10:ENST00000443503.6:ENST00000435525.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.35679	4.757345	5.1579	0.0332741	0.0269673	0.133139	0.112113
chr1	32075822	32075922	81662	0	+	0.44	(0.419,0.45]	chr1	9395	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TMEM39B	ENSG00000121775.18	ENST00000487305.5:ENST00000438825.5:ENST00000336294.10:ENST00000441402.5:ENST00000472503.5:ENST00000468135.5:ENST00000466321.5:ENST00000476968.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	46	2	4.19215	4.75705	5.32195	0.0617113	0.0431627	0.18013	0.138403
chr16	50623199	50623298	6452161	0	+	0.585859	(0.58,1]	chr16	639918	11	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.62403	4.75705	4.89007	0.0578275	0.00872525	0.154343	0.0612699
chr17	80274003	80274102	6807304	0	+	0.585859	(0.58,1]	chr17	687364	2	INTRON	INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000319921.4	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.62403	4.75705	4.89007	0.0578275	0.00872525	0.154343	0.0612699
chr17	82844385	82844485	6819309	0	+	0.65	(0.58,1]	chr17	689318	133	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.62403	4.75705	4.89007	0.0578275	0.00872525	0.154343	0.0612699
chr19	15646063	15646163	7215415	0	+	0.44	(0.419,0.45]	chr19	737144	2	SS5_PROX	SS5_PROX:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1:ENST00000609670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	46	2	4.19215	4.75705	5.32195	0.0617113	0.0431627	0.18013	0.138403
chr3	13208424	13208524	1691226	0	-	0.6	(0.58,1]	chr3	176566	439	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.62403	4.75705	4.89007	0.0578275	0.00872525	0.154343	0.0612699
chr7	1072081	1072181	3526948	0	-	0.6	(0.58,1]	chr7	340585	169	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.62403	4.75705	4.89007	0.0578275	0.00872525	0.154343	0.0612699
chr7	47536986	47537086	3589184	0	-	0.8	(0.58,1]	chr7	346144	75	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.62403	4.75705	4.89007	0.0578275	0.00872525	0.154343	0.0612699
chrX	31201087	31201186	8003398	0	-	0.585859	(0.58,1]	chrX	836856	51	INTRON	INTRON	DMD	ENSG00000198947.18	ENST00000378723.7:ENST00000681989.1:ENST00000358062.6:ENST00000357033.9:ENST00000619831.5:ENST00000378677.6:ENST00000359836.5:ENST00000378707.7:ENST00000541735.5:ENST00000343523.7:ENST00000684130.1:ENST00000680961.1:ENST00000682238.1:ENST00000683675.1:ENST00000680355.1:ENST00000682322.1:ENST00000682600.1:ENST00000680162.2:ENST00000679641.1:ENST00000680557.1:ENST00000620040.5:ENST00000680768.2:ENST00000683709.1:ENST00000682769.1:ENST00000378702.8:ENST00000474231.5:ENST00000361471.8:ENST00000683509.1:ENST00000378680.6:ENST00000681153.1:ENST00000683957.1:ENST00000378705.3:ENST00000681654.1:ENST00000681334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.62403	4.75705	4.89007	0.0578275	0.00872525	0.154343	0.0612699
chr2	152637090	152637185	928508	0	+	0.484211	(0.45,0.485]	chr2	103186	1	SS3_PROX	SS3_PROX:INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14:ENST00000475377.2	protein_coding	protein_coding	protein_coding	protein_coding	1	92	2	3.93538	4.75696	5.57854	0.0230065	0.00301535	0.102982	0.0305643
chr9	83317130	83317230	4323713	0	-	0.35	(0.33,0.36]	chr9	413110	30	INTRON	INTRON	FRMD3	ENSG00000172159.16	ENST00000376438.5:ENST00000376434.5:ENST00000304195.8:ENST00000621208.4	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.70894	4.756955	4.80497	0.0798152	0.0188359	0.176933	0.0980631
chr16	89432524	89432624	6661159	0	-	0.39	(0.36,0.39]	chr16	666753	8	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	175	2	2.92652	4.75695	6.58738	0.00600467	0.00521906	0.0483141	0.0475638
chr8	127849441	127849540	3918337	0	+	0.414141	(0.39,0.419]	chr8	374180	28	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000655594.1	lncRNA	lncRNA	lncRNA	lncRNA	1	98	2	4.10127	4.756905	5.41254	0.0347088	0.00230482	0.12648	0.0254829
chr1	2269734	2269833	4909	0	+	0.676768	(0.58,1]	chr1	1052	213	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.6951	4.75686	4.81862	0.0521567	0.0102696	0.148503	0.0678072
chr14	95408560	95408659	6048862	0	-	0.585859	(0.58,1]	chr14	593438	14	UTR3	UTR3:EXON_MRNA	SYNE3	ENSG00000176438.13	ENST00000682763.1:ENST00000557275.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.6951	4.75686	4.81862	0.0521567	0.0102696	0.148503	0.0678072
chr17	81207739	81207837	6983386	0	-	0.642857	(0.58,1]	chr17	713387	1	INTRON	INTRON	CEP131	ENSG00000141577.14	ENST00000374782.7:ENST00000269392.8:ENST00000450824.7:ENST00000575907.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.6951	4.75686	4.81862	0.0521567	0.0102696	0.148503	0.0678072
chr19	5900441	5900539	7318275	0	-	0.581633	(0.58,1]	chr19	755741	31	INTRON	INTRON	NDUFA11	ENSG00000174886.14	ENST00000418389.6:ENST00000308961.5:ENST00000592634.5:ENST00000593233.1:ENST00000650663.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.6951	4.75686	4.81862	0.0521567	0.0102696	0.148503	0.0678072
chr3	13204625	13204725	1691188	0	-	0.63	(0.58,1]	chr3	176566	401	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.6951	4.75686	4.81862	0.0521567	0.0102696	0.148503	0.0678072
chr9	129610373	129610473	4250934	0	+	0.65	(0.58,1]	chr9	404743	8	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.6951	4.75686	4.81862	0.0521567	0.0102696	0.148503	0.0678072
chr12	26773458	26773558	5401004	0	-	0.48	(0.45,0.485]	chr12	528735	473	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000545235.1:ENST00000242737.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	91	2	3.76457	4.75685	5.74913	0.017574	0.00463252	0.0906595	0.0408278
chr13	113040441	113040535	5656035	0	+	0.542553	(0.523,0.58]	chr13	555164	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000480321.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.60868	4.75684	4.905	0.0563605	0.0226775	0.154188	0.108193
chr14	94307008	94307105	6046242	0	-	0.57732000000000006	(0.523,0.58]	chr14	593049	4	INTRON	INTRON	SERPINA6	ENSG00000170099.6	ENST00000341584.4:ENST00000555056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.60868	4.75684	4.905	0.0563605	0.0226775	0.154188	0.108193
chr21	45455021	45455121	7630813	0	+	0.55	(0.523,0.58]	chr21	797656	492	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.60868	4.75684	4.905	0.0563605	0.0226775	0.154188	0.108193
chr8	124672696	124672796	4064384	0	-	0.55	(0.523,0.58]	chr8	387129	1	SS5_PROX	SS5_PROX:INTRON	MTSS1	ENSG00000170873.19	ENST00000518547.6:ENST00000378017.7:ENST00000325064.9:ENST00000522162.1:ENST00000529463.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.60868	4.75684	4.905	0.0563605	0.0226775	0.154188	0.108193
chr15	68182452	68182549	6141792	0	+	0.505155	(0.485,0.523]	chr15	604134	7	INTRON	INTRON	PIAS1	ENSG00000033800.14	ENST00000249636.11:ENST00000545237.1:ENST00000563996.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	237	2	4.53126	4.756295	4.98133	0.00340083	1.44235e-4	0.0373142	0.00358393
chr7	213267	213367	3305787	0	+	0.53	(0.523,0.58]	chr7	320161	39	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	89	2	3.78755	4.75621	5.72487	0.0163679	0.00401039	0.0875379	0.0371192
chr7	1024201	1024301	3526465	0	-	0.6	(0.58,1]	chr7	340572	137	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	112	2	3.13356	4.75589	6.37822	0.00559148	0.00252415	0.0460395	0.031696
chr12	1393562	1393662	5154325	0	+	0.39	(0.36,0.39]	chr12	500894	212	INTRON	INTRON	ERC1	ENSG00000082805.21	ENST00000543086.7:ENST00000360905.9:ENST00000690948.1:ENST00000542302.6:ENST00000546231.6:ENST00000347735.10:ENST00000397203.7:ENST00000440394.7:ENST00000545948.5:ENST00000589028.6:ENST00000355446.9:ENST00000538971.6:ENST00000588412.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.56926	4.755599999999999	4.94194	0.064883	0.031369	0.162218	0.127822
chr15	63813332	63813432	6296636	0	-	0.37	(0.36,0.39]	chr15	620554	324	INTRON	INTRON	HERC1	ENSG00000103657.14	ENST00000443617.7:ENST00000561400.1:ENST00000559886.1:ENST00000558532.1:ENST00000560462.1:ENST00000560316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.56926	4.755599999999999	4.94194	0.064883	0.031369	0.162218	0.127822
chr3	37265044	37265144	1441614	0	+	0.38	(0.36,0.39]	chr3	153768	132	INTRON	INTRON	GOLGA4	ENSG00000144674.17	ENST00000435830.6:ENST00000444882.5:ENST00000356847.8:ENST00000450863.6:ENST00000361924.7:ENST00000429018.5:ENST00000431105.1:ENST00000419177.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.56926	4.755599999999999	4.94194	0.064883	0.031369	0.162218	0.127822
chr3	114959665	114959765	1881408	0	-	0.38	(0.36,0.39]	chr3	190959	549	INTRON	INTRON	ZBTB20	ENSG00000181722.17	ENST00000675478.1:ENST00000357258.8:ENST00000462705.5:ENST00000463890.5:ENST00000492665.5:ENST00000488663.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.56926	4.755599999999999	4.94194	0.064883	0.031369	0.162218	0.127822
chr11	96166006	96166106	5111796	0	-	0.41	(0.39,0.419]	chr11	496566	721	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	2	171	2	3.39858	4.7555700000000005	6.11256	0.015351	0.00108325	0.0849828	0.0149525
chr1	2182708	2182806	4463	0	+	0.561224	(0.523,0.58]	chr1	1030	4	INTRON	INTRON	PRKCZ	ENSG00000067606.17	ENST00000378567.8:ENST00000400921.6:ENST00000461106.6:ENST00000479263.5:ENST00000478770.6:ENST00000505322.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.34118	4.755435	5.16969	0.0387762	0.0372357	0.139793	0.131324
chr10	119287325	119287425	4594120	0	+	0.57	(0.523,0.58]	chr10	439167	743	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.34118	4.755435	5.16969	0.0387762	0.0372357	0.139793	0.131324
chr11	70743383	70743483	5061715	0	-	0.58	(0.523,0.58]	chr11	492701	255	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.34118	4.755435	5.16969	0.0387762	0.0372357	0.139793	0.131324
chr14	54634388	54634488	5820117	0	+	0.54	(0.523,0.58]	chr14	569049	659	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.34118	4.755435	5.16969	0.0387762	0.0372357	0.139793	0.131324
chr16	74470273	74470373	6640809	0	-	0.54	(0.523,0.58]	chr16	663918	2	SS3_PROX	SS3_PROX:INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000563432.5:ENST00000566601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.34118	4.755435	5.16969	0.0387762	0.0372357	0.139793	0.131324
chr6	167941432	167941531	3074515	0	+	0.555556	(0.523,0.58]	chr6	298923	83	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7:ENST00000507679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	43	2	4.34118	4.755435	5.16969	0.0387762	0.0372357	0.139793	0.131324
chr1	44244662	44244761	459619	0	-	0.50505	(0.485,0.523]	chr1	55307	22	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.60518	4.7553	4.90542	0.0561086	0.0233371	0.154188	0.110098
chr17	3017860	3017960	6670040	0	+	0.49	(0.485,0.523]	chr17	668117	4	SS3_PROX	SS3_PROX:INTRON	RAP1GAP2	ENSG00000132359.15	ENST00000637138.1:ENST00000540393.6:ENST00000254695.13:ENST00000366401.8:ENST00000542807.1:ENST00000575979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.60518	4.7553	4.90542	0.0561086	0.0233371	0.154188	0.110098
chr1	43965193	43965286	110813	0	+	0.526882	(0.523,0.58]	chr1	13723	5	INTRON	INTRON	IPO13	ENSG00000117408.11	ENST00000372343.8	protein_coding	protein_coding	protein_coding	protein_coding	1	92	2	4.11732	4.755295	5.39327	0.0277354	0.00168626	0.112851	0.0204375
chr6	601918	602018	3078179	0	-	0.53	(0.523,0.58]	chr6	299385	23	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	1	92	2	4.11732	4.755295	5.39327	0.0277354	0.00168626	0.112851	0.0204375
chr1	235991158	235991258	692998	0	-	0.47	(0.45,0.485]	chr1	81531	1	SS3_PROX	SS3_PROX:INTRON	NID1	ENSG00000116962.15	ENST00000366595.7:ENST00000264187.7	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.49786	4.755265	5.01267	0.101311	0.011221	0.196131	0.071709
chr10	96873907	96874007	4561273	0	+	0.47	(0.45,0.485]	chr10	435167	151	INTRON	INTRON	LCOR	ENSG00000196233.14	ENST00000676067.1:ENST00000676257.1:ENST00000676187.1:ENST00000675151.1:ENST00000675687.1:ENST00000675251.1:ENST00000676123.1:ENST00000371103.8:ENST00000675471.1:ENST00000421806.4:ENST00000675902.1:ENST00000540664.6:ENST00000676414.1:ENST00000675537.1:ENST00000675117.1:ENST00000675125.1:ENST00000356016.7:ENST00000371097.8:ENST00000676381.1:ENST00000674796.1:ENST00000674725.1:ENST00000675971.1:ENST00000676373.1:ENST00000676314.1:ENST00000675915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.49786	4.755265	5.01267	0.101311	0.011221	0.196131	0.071709
chr13	100523716	100523815	5647355	0	+	0.484848	(0.45,0.485]	chr13	554135	78	INTRON	INTRON	PCCA	ENSG00000175198.17	ENST00000376286.8:ENST00000376279.7:ENST00000376285.6:ENST00000647303.1:ENST00000637657.1:ENST00000636366.1:ENST00000636475.1:ENST00000458283.5:ENST00000428969.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.49786	4.755265	5.01267	0.101311	0.011221	0.196131	0.071709
chr18	76437247	76437347	7179492	0	-	0.59	(0.58,1]	chr18	730080	566	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	1	84	2	3.52722	4.75522	5.98322	0.00611467	0.00562007	0.0493906	0.0489549
chr7	73602091	73602191	3602878	0	-	0.56	(0.523,0.58]	chr7	347634	20	INTRON	INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1:ENST00000488212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	221	2	2.13221	4.755005	7.3778	0.021323	7.7332e-4	0.104646	0.0164417
chr14	104892475	104892575	5926151	0	+	0.61	(0.58,1]	chr14	580000	1	SS3_PROX	SS3_PROX:INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.3962	4.754875	5.11355	0.0271806	0.0250928	0.114418	0.112113
chr2	239272684	239272783	1391435	0	-	0.656566	(0.58,1]	chr2	148740	211	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	41	2	4.3962	4.754875	5.11355	0.0271806	0.0250928	0.114418	0.112113
chr21	33236247	33236347	7609131	0	+	0.62	(0.58,1]	chr21	794612	53	INTRON	INTRON	IFNAR2	ENSG00000159110.21	ENST00000683941.1:ENST00000382264.7:ENST00000342136.9:ENST00000404220.7:ENST00000420068.1:ENST00000342101.7:ENST00000382238.6:ENST00000413881.5:ENST00000443073.5:ENST00000447980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.3962	4.754875	5.11355	0.0271806	0.0250928	0.114418	0.112113
chr7	240905	241005	3306064	0	+	0.62	(0.58,1]	chr7	320161	316	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.3962	4.754875	5.11355	0.0271806	0.0250928	0.114418	0.112113
chr6	16760056	16760102	3104454	0	-	0.804348	(0.58,1]	chr6	300920	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000675689.1:ENST00000473388.6:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1:ENST00000676138.1:ENST00000467008.5:ENST00000498374.1:ENST00000492857.1:ENST00000479680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	134	2	2.89304	4.7547999999999995	6.61656	0.00592504	0.00152464	0.047896	0.0240691
chr20	8454747	8454847	7429815	0	+	0.31	(0.29,0.33]	chr20	773698	827	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.33251	4.7547049999999995	5.1769	0.0396433	0.035586	0.143388	0.127529
chr11	70696781	70696880	5061247	0	-	0.393939	(0.39,0.419]	chr11	492688	268	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.56871	4.754655	4.9406	0.0658437	0.0315133	0.162385	0.127889
chr2	101821527	101821627	861874	0	+	0.4	(0.39,0.419]	chr2	97540	215	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5:ENST00000627726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.56871	4.754655	4.9406	0.0658437	0.0315133	0.162385	0.127889
chr4	885084	885184	2178453	0	-	0.54	(0.523,0.58]	chr4	220625	6	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5	protein_coding	protein_coding	protein_coding	protein_coding	1	112	2	2.88392	4.754595	6.62527	0.0586821	1.49357e-4	0.155604	0.00367368
chr16	87859608	87859707	6657070	0	-	0.535354	(0.523,0.58]	chr16	666007	74	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	1	109	2	3.0773	4.75457	6.43184	0.0438724	2.62665e-4	0.139792	0.00552802
chr11	12840311	12840411	4803306	0	+	0.46	(0.45,0.485]	chr11	460567	116	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6:ENST00000525312.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.67139	4.7544699999999995	4.83755	0.06646	0.0223378	0.162385	0.108193
chr7	112204301	112204401	3692551	0	-	0.47	(0.45,0.485]	chr7	354969	1998	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	41	2	4.67139	4.7544699999999995	4.83755	0.06646	0.0223378	0.162385	0.108193
chr17	305715	305815	6821332	0	-	0.56	(0.523,0.58]	chr17	689578	235	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000570954.1:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	92	2	3.35934	4.754425	6.14951	0.0113252	0.00793972	0.071894	0.0596361
chr3	73004641	73004741	1502806	0	+	0.5	(0.485,0.523]	chr3	160766	61	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000495566.1:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	144	2	3.03119	4.754395	6.4776	0.00531215	0.00436205	0.0446153	0.0427656
chr2	38325906	38326006	1123819	0	-	0.39	(0.36,0.39]	chr2	123019	65	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	114	2	3.16425	4.75436	6.34447	0.0430514	5.89187e-4	0.138389	0.00981079
chr18	6384289	6384389	7113572	0	-	0.34	(0.33,0.36]	chr18	723940	95	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000317931.12:ENST00000400104.7:ENST00000583809.5:ENST00000581231.5:ENST00000580162.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.211	4.75427	5.29754	0.0541541	0.0360263	0.167824	0.127853
chr16	67967938	67968038	6610231	0	-	0.63	(0.58,1]	chr16	661576	1	SS5_PROX	SS5_PROX:INTRON	SLC12A4	ENSG00000124067.17	ENST00000422611.6:ENST00000316341.8:ENST00000572037.5:ENST00000570802.5:ENST00000576616.5:ENST00000573023.6:ENST00000576377.1:ENST00000571299.5:ENST00000572010.5:ENST00000576462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.29454	4.754155	5.21377	0.0305531	0.0230012	0.126768	0.102982
chr22	50729177	50729275	7755483	0	+	0.591837	(0.58,1]	chr22	812807	47	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.29454	4.754155	5.21377	0.0305531	0.0230012	0.126768	0.102982
chr4	716734	716834	1993795	0	+	0.6	(0.58,1]	chr4	203088	104	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.29454	4.754155	5.21377	0.0305531	0.0230012	0.126768	0.102982
chr9	134335941	134336041	4260782	0	+	0.64	(0.58,1]	chr9	406311	89	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.29454	4.754155	5.21377	0.0305531	0.0230012	0.126768	0.102982
chr2	27840368	27840468	1113788	0	-	0.51	(0.485,0.523]	chr2	121905	72	INTRON	INTRON	RBKS	ENSG00000171174.15	ENST00000302188.8:ENST00000449378.1:ENST00000458185.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.33772	4.75392	5.17012	0.038581	0.03818	0.140822	0.131324
chr6	75776653	75776752	2941627	0	+	0.494949	(0.485,0.523]	chr6	289430	182	INTRON	INTRON	MYO6	ENSG00000196586.17	ENST00000663400.1:ENST00000662184.1:ENST00000671923.1:ENST00000653917.1:ENST00000369975.6:ENST00000664209.1:ENST00000627432.3:ENST00000369985.9:ENST00000369977.8:ENST00000664640.1:ENST00000662603.1:ENST00000660420.1:ENST00000653423.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.33772	4.75392	5.17012	0.038581	0.03818	0.140822	0.131324
chr19	34386696	34386796	7243217	0	+	0.49	(0.485,0.523]	chr19	741718	47	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	137	2	2.55201	4.753805	6.9556	0.0272692	0.00176368	0.119337	0.0260917
chr1	43557231	43557330	107011	0	+	0.59596	(0.58,1]	chr1	13192	29	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.54927	4.753705	4.95814	0.0643046	0.0074469	0.161669	0.0553519
chr1	201398768	201398868	642209	0	-	0.66	(0.58,1]	chr1	75865	1	SS5_PROX	SS5_PROX:INTRON	LAD1	ENSG00000159166.15	ENST00000391967.7:ENST00000367313.4:ENST00000631576.1:ENST00000633953.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.54927	4.753705	4.95814	0.0643046	0.0074469	0.161669	0.0553519
chr17	77487552	77487652	6805260	0	+	0.68	(0.58,1]	chr17	686827	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.54927	4.753705	4.95814	0.0643046	0.0074469	0.161669	0.0553519
chr19	2332410	2332510	7189443	0	+	0.59	(0.58,1]	chr19	731774	16	INTRON	INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.54927	4.753705	4.95814	0.0643046	0.0074469	0.161669	0.0553519
chr19	47228431	47228446	7392365	0	-	0.866667	(0.58,1]	chr19	768103	1	CDS	CDS:UTR5:EXON_MRNA:INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.54927	4.753705	4.95814	0.0643046	0.0074469	0.161669	0.0553519
chr21	37368132	37368232	7618981	0	+	0.78	(0.58,1]	chr21	796009	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.54927	4.753705	4.95814	0.0643046	0.0074469	0.161669	0.0553519
chr3	23842287	23842387	1431155	0	+	0.61	(0.58,1]	chr3	152792	304	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.54927	4.753705	4.95814	0.0643046	0.0074469	0.161669	0.0553519
chr7	220950	221049	3305864	0	+	0.656566	(0.58,1]	chr7	320161	116	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.54927	4.753705	4.95814	0.0643046	0.0074469	0.161669	0.0553519
chr7	231725	231825	3305972	0	+	0.59	(0.58,1]	chr7	320161	224	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.54927	4.753705	4.95814	0.0643046	0.0074469	0.161669	0.0553519
chr11	27451831	27451931	5019701	0	-	0.25	[0,0.29]	chr11	485493	386	INTRON	INTRON	LGR4	ENSG00000205213.14	ENST00000379214.9:ENST00000389858.4:ENST00000480977.2	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.62442	4.75364	4.88286	0.041613	0.019938	0.136301	0.100864
chr10	86823973	86824073	4538681	0	+	0.35	(0.33,0.36]	chr10	432895	667	INTRON	INTRON	BMPR1A	ENSG00000107779.14	ENST00000638429.1:ENST00000372037.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.73368	4.753615	4.77355	0.0735809	0.0216127	0.17026	0.105648
chr16	20674922	20675022	6416206	0	+	0.57	(0.523,0.58]	chr16	634381	1	SS5_PROX	SS5_PROX:INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000614721.1:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	153	2	2.43559	4.75355	7.07151	0.0628646	3.86786e-5	0.160778	0.00135841
chr17	80876826	80876925	6812239	0	+	0.646465	(0.58,1]	chr17	687891	186	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.74346	4.75315	4.76284	0.0471737	0.0121457	0.143232	0.0754623
chr2	239349579	239349679	1392206	0	-	0.71	(0.58,1]	chr2	148752	251	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.74346	4.75315	4.76284	0.0471737	0.0121457	0.143232	0.0754623
chr21	45429947	45430047	7630562	0	+	0.65	(0.58,1]	chr21	797656	241	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.74346	4.75315	4.76284	0.0471737	0.0121457	0.143232	0.0754623
chr6	158022581	158022680	3059718	0	+	0.585859	(0.58,1]	chr6	297373	44	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.74346	4.75315	4.76284	0.0471737	0.0121457	0.143232	0.0754623
chr7	77000008	77000108	3398800	0	+	0.67	(0.58,1]	chr7	328287	3	SS3_PROX	SS3_PROX:INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.74346	4.75315	4.76284	0.0471737	0.0121457	0.143232	0.0754623
chr11	64306846	64306946	4868822	0	+	0.65	(0.58,1]	chr11	467349	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ESRRA	ENSG00000173153.17	ENST00000406310.6:ENST00000000442.11:ENST00000677967.1:ENST00000539594.5:ENST00000405666.5:ENST00000468670.2	protein_coding	protein_coding	protein_coding	protein_coding	2	110	2	3.41349	4.753025	6.09256	0.00452436	0.00257862	0.0436138	0.0275472
chr16	89426759	89426859	6661101	0	-	0.5	(0.485,0.523]	chr16	666747	80	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	93	2	4.15438	4.753025	5.35167	0.0294163	0.00156066	0.116079	0.0194067
chr1	204082477	204082576	322144	0	+	0.606061	(0.58,1]	chr1	36272	39	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1:ENST00000528591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	111	2	3.19406	4.752995	6.31193	0.00474968	0.00289626	0.0413976	0.03418
chr13	98337609	98337708	5635620	0	+	0.383838	(0.36,0.39]	chr13	553508	34	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5:ENST00000601361.1:ENST00000595817.5:ENST00000595380.5:ENST00000596467.5:ENST00000600032.5:ENST00000601853.5:ENST00000596613.5:ENST00000598346.5:ENST00000602171.5:ENST00000602272.5:ENST00000601133.5:ENST00000599040.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	47	2	4.09186	4.752879999999999	5.4139	0.0687088	0.0340874	0.193274	0.125059
chr9	14781503	14781602	4279515	0	-	0.222222	[0,0.29]	chr9	408888	21	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7:ENST00000485068.5:ENST00000466679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.45163	4.75286	5.05409	0.0318802	0.0278965	0.12158	0.12105
chr1	7480100	7480200	15411	0	+	0.54	(0.523,0.58]	chr1	1895	118	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.43597	4.75277	5.06957	0.0448011	0.0313935	0.140478	0.127822
chr11	70788549	70788649	5062167	0	-	0.54	(0.523,0.58]	chr11	492701	707	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.43597	4.75277	5.06957	0.0448011	0.0313935	0.140478	0.127822
chr13	24891557	24891654	5672225	0	-	0.56701	(0.523,0.58]	chr13	557125	18	INTRON	INTRON	CENPJ	ENSG00000151849.16	ENST00000381884.9:ENST00000616936.4:ENST00000545981.6:ENST00000418179.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.43597	4.75277	5.06957	0.0448011	0.0313935	0.140478	0.127822
chr16	85440214	85440314	6517473	0	+	0.54	(0.523,0.58]	chr16	646391	809	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.43597	4.75277	5.06957	0.0448011	0.0313935	0.140478	0.127822
chr2	239086226	239086326	1389537	0	-	0.54	(0.523,0.58]	chr2	148608	4	PRIMIRNA	PRIMIRNA:INTRON	HDAC4:MIR4441	ENSG00000068024.18:ENSG00000264810.1	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000487617.5:ENST00000582623.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	0	42	2	4.43597	4.75277	5.06957	0.0448011	0.0313935	0.140478	0.127822
chr9	135839358	135839458	4431140	0	-	0.55	(0.523,0.58]	chr9	423507	114	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	1	89	2	3.84801	4.75275	5.65749	0.0182707	0.00343547	0.0921579	0.0333396
chr15	92971464	92971564	6190543	0	+	0.34	(0.33,0.36]	chr15	609439	3	SS3_PROX	SS3_PROX:INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000625990.3:ENST00000637572.1:ENST00000636881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	93	2	3.89271	4.75241	5.61211	0.022456	0.00362349	0.102751	0.0343232
chr19	2337780	2337857	7189503	0	+	0.662338	(0.58,1]	chr19	731792	3	EXON_MRNA	EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1:ENST00000593243.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	110	2	3.43872	4.752355	6.06599	0.00477081	0.00239935	0.0450109	0.0261006
chr5	78166072	78166172	2700242	0	-	0.52	(0.485,0.523]	chr5	266534	4	SS3_PROX	SS3_PROX:INTRON	AP3B1	ENSG00000132842.15	ENST00000519295.6:ENST00000255194.11:ENST00000695515.1:ENST00000695454.1:ENST00000695511.1:ENST00000695453.1:ENST00000695455.1:ENST00000695513.1:ENST00000695488.1:ENST00000695450.1:ENST00000695507.1:ENST00000695512.1:ENST00000695510.1:ENST00000695451.1:ENST00000695447.1:ENST00000695505.1:ENST00000519888.6:ENST00000695514.1:ENST00000517940.2:ENST00000517561.2:ENST00000695452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	93	2	3.30597	4.75207	6.19817	0.012958	0.00723584	0.0778899	0.0565323
chr5	168549491	168549591	2808524	0	-	0.23	[0,0.29]	chr5	275053	11	UTR3	UTR3:EXON_MRNA	PANK3	ENSG00000120137.7	ENST00000239231.7	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	3.74141	4.752025	5.76264	0.00936955	0.00417019	0.0652356	0.0378966
chr18	77019177	77019277	7180506	0	-	0.4	(0.39,0.419]	chr18	730157	15	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000580402.5:ENST00000580473.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000495162.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	47	2	4.09132	4.75193	5.41254	0.0689553	0.0347088	0.193274	0.12648
chr5	172947926	172948025	2591586	0	+	0.393939	(0.39,0.419]	chr5	257156	101	INTRON	INTRON	ERGIC1	ENSG00000113719.17	ENST00000393784.8:ENST00000690799.1:ENST00000686615.1:ENST00000684928.1:ENST00000691612.1:ENST00000687901.1:ENST00000689975.1:ENST00000693299.1:ENST00000687702.1:ENST00000685391.1:ENST00000686955.1:ENST00000692557.1:ENST00000686449.1:ENST00000693572.1:ENST00000688069.1:ENST00000523215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	47	2	4.09132	4.75193	5.41254	0.0689553	0.0347088	0.193274	0.12648
chr11	70574829	70574929	5060021	0	-	0.5	(0.485,0.523]	chr11	492663	715	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	91	2	3.4289	4.751665	6.07443	0.00977282	0.00899749	0.0664239	0.0637469
chr17	355396	355496	6821847	0	-	0.57	(0.523,0.58]	chr17	689641	24	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.23973	4.751525	5.26332	0.0444247	0.0337698	0.153511	0.124319
chr5	150516901	150517000	2565180	0	+	0.535354	(0.523,0.58]	chr5	254953	83	INTRON	INTRON	NDST1	ENSG00000070614.15	ENST00000522491.1:ENST00000519157.1:ENST00000524161.1:ENST00000523767.5:ENST00000518299.1:ENST00000518346.1:ENST00000261797.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.23973	4.751525	5.26332	0.0444247	0.0337698	0.153511	0.124319
chr9	134344724	134344823	4260870	0	+	0.575758	(0.523,0.58]	chr9	406311	177	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	44	2	4.23973	4.751525	5.26332	0.0444247	0.0337698	0.153511	0.124319
chr4	3178446	3178546	2003652	0	+	0.5	(0.485,0.523]	chr4	204460	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000680291.1:ENST00000510626.5:ENST00000509043.1:ENST00000513326.5:ENST00000513639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.43249	4.751239999999999	5.06999	0.0445854	0.0322299	0.140478	0.12988
chr1	246234523	246234623	703130	0	-	0.42	(0.419,0.45]	chr1	82422	409	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	100	2	4.13851	4.75123	5.36395	0.0407485	0.00222652	0.135868	0.0248148
chr7	29225482	29225582	3334598	0	+	0.35	(0.33,0.36]	chr7	322843	271	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5:ENST00000222792.11:ENST00000409350.5:ENST00000409964.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.49588	4.75115	5.00642	0.0542065	0.033477	0.151733	0.133139
chr20	26010371	26010468	7452327	0	+	0.463918	(0.45,0.485]	chr20	775551	7	EXON_LNCRNA	EXON_LNCRNA	ENSG00000287569	ENSG00000287569.1	ENST00000668826.1	lncRNA	lncRNA	lncRNA	lncRNA	3	325	2	4.73713	4.751015	4.7649	0.00243108	8.63664e-5	0.0311119	0.00245611
chr6	24225686	24225786	3108999	0	-	0.3	(0.29,0.33]	chr6	301412	202	INTRON	INTRON	DCDC2	ENSG00000146038.12	ENST00000378454.8	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.2311	4.750819999999999	5.27054	0.0471437	0.0308815	0.156915	0.119556
chr20	58695391	58695490	7498637	0	+	0.545455	(0.523,0.58]	chr20	782002	4	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	90	2	3.98894	4.750705	5.51247	0.0230387	0.00237791	0.102982	0.026
chr15	28217988	28218088	6207151	0	-	0.47	(0.45,0.485]	chr15	611112	1	SS5_PROX	SS5_PROX:INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	3.57078	4.75056	5.93034	0.0130794	0.00740503	0.0782396	0.0553519
chr15	67077187	67077287	6139188	0	+	0.36	(0.33,0.36]	chr15	603934	89	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1	protein_coding	protein_coding	protein_coding	protein_coding	1	107	2	2.88577	4.750395	6.61502	0.0339073	0.00413645	0.133585	0.0416015
chr6	20424124	20424224	2863223	0	+	0.31	(0.29,0.33]	chr6	279635	199	INTRON	INTRON	E2F3	ENSG00000112242.16	ENST00000346618.8:ENST00000535432.2	protein_coding	protein_coding	protein_coding	protein_coding	4	168	2	3.11699	4.75016	6.38333	0.00461717	0.00304379	0.0442497	0.0306691
chr6	129668680	129668780	3259502	0	-	0.54	(0.523,0.58]	chr6	315424	263	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	1	90	2	3.47888	4.750125000000001	6.02137	0.00992924	0.00856566	0.0671959	0.0612
chr5	59794066	59794166	2672081	0	-	0.49	(0.485,0.523]	chr5	264366	256	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000502484.6:ENST00000405053.7:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	44	2	4.23628	4.750014999999999	5.26375	0.045492200000000003	0.0335928	0.154539	0.124319
chr10	102650872	102650972	4576533	0	+	0.56	(0.523,0.58]	chr10	437284	12	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1:ENST00000487927.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	91	2	3.4003	4.749955	6.09961	0.0103016	0.00866655	0.0678983	0.0623824
chr10	103700211	103700311	4757102	0	-	0.42	(0.419,0.45]	chr10	454791	67	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	116	2	3.23741	4.74988	6.26235	0.0408938	8.27298e-4	0.136191	0.0124589
chr19	44947888	44947965	7269172	0	+	0.467532	(0.45,0.485]	chr19	746448	2	INTRON	INTRON	APOC4-APOC2:APOC2	ENSG00000224916.9:ENSG00000234906.11	ENST00000585685.5:ENST00000589057.5:ENST00000592257.5:ENST00000252490.7:ENST00000591597.5:ENST00000590360.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.11446	4.749745000000001	5.38503	0.0592571	0.0308908	0.176157	0.119556
chr11	64143467	64143566	5049012	0	-	0.707071	(0.58,1]	chr11	490257	167	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	87	2	4.28568	4.749725	5.21377	0.0230012	7.30957e-4	0.102982	0.0113963
chr2	239278079	239278179	1391489	0	-	0.5	(0.485,0.523]	chr2	148740	265	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	109	2	3.49585	4.74963	6.00341	0.0222996	9.07333e-4	0.102226	0.0132726
chr10	18555269	18555368	4642281	0	-	0.383838	(0.36,0.39]	chr10	443321	29	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.30212	4.749625	5.19713	0.0494303	0.0462258	0.160725	0.143138
chr14	34994719	34994816	5777545	0	+	0.371134	(0.36,0.39]	chr14	566416	9	INTRON	INTRON	SRP54	ENSG00000100883.13	ENST00000556994.5:ENST00000678836.1:ENST00000546080.6:ENST00000554803.5:ENST00000555746.6:ENST00000678963.1:ENST00000677561.1:ENST00000678477.1:ENST00000677621.1:ENST00000553923.2:ENST00000679045.1:ENST00000678519.1:ENST00000553544.1:ENST00000678627.1:ENST00000216774.11:ENST00000555317.5:ENST00000555557.5:ENST00000678274.1:ENST00000556380.3:ENST00000555535.1:ENST00000677647.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.30212	4.749625	5.19713	0.0494303	0.0462258	0.160725	0.143138
chr16	3026250	3026288	6376238	0	+	0.605263	(0.58,1]	chr16	630262	1	CDS	CDS:EXON_MRNA	THOC6	ENSG00000131652.14	ENST00000576143.5:ENST00000574957.1:ENST00000326266.13:ENST00000574549.5:ENST00000571057.5:ENST00000575576.5:ENST00000574498.5:ENST00000573704.5:ENST00000253952.9:ENST00000571046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	98	2	4.67156	4.749545	4.82753	0.0427798	2.20504e-4	0.13762	0.00485102
chr3	58019954	58020054	1483153	0	+	0.58	(0.523,0.58]	chr3	159572	107	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	361	2	4.66139	4.749305	4.83722	0.00109017	2.14954e-4	0.0198839	0.00476765
chr13	75403987	75404087	5727224	0	-	0.35	(0.33,0.36]	chr13	561722	268	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	2	129	2	3.68869	4.74929	5.80989	0.0164265	0.00196826	0.0877406	0.0227769
chr3	51665697	51665796	1472197	0	+	0.525253	(0.523,0.58]	chr3	157989	24	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	2	119	2	3.23118	4.7491900000000005	6.2672	0.00644151	0.00547248	0.0530091	0.0454065
chr15	22964507	22964606	6204157	0	-	0.707071	(0.58,1]	chr15	610573	161	INTRON	INTRON	CYFIP1	ENSG00000273749.5	ENST00000617928.5:ENST00000610365.4:ENST00000613006.4:ENST00000611832.4:ENST00000619037.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	84	2	4.10248	4.74897	5.39546	0.0168207	0.0012583	0.0884836	0.0167083
chr11	70657730	70657830	5060852	0	-	0.4	(0.39,0.419]	chr11	492672	29	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	94	2	3.52474	4.74866	5.97258	0.0148746	0.00920811	0.0833515	0.0637008
chr21	37458105	37458205	7619891	0	+	0.4	(0.39,0.419]	chr21	796063	14	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000455097.6:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2	protein_coding	protein_coding	protein_coding	protein_coding	1	94	2	3.52474	4.74866	5.97258	0.0148746	0.00920811	0.0833515	0.0637008
chr11	10166958	10167058	4995229	0	-	0.38	(0.36,0.39]	chr11	483384	1225	INTRON	INTRON	SBF2	ENSG00000133812.18	ENST00000692716.1:ENST00000689940.1:ENST00000256190.13:ENST00000689128.1:ENST00000675281.2:ENST00000676387.2:ENST00000676324.2:ENST00000689258.1:ENST00000533770.6:ENST00000688417.1:ENST00000687210.1:ENST00000526353.2:ENST00000693022.1:ENST00000693201.1:ENST00000686079.1:ENST00000688206.1:ENST00000687256.1:ENST00000685217.1:ENST00000693212.1:ENST00000687300.1:ENST00000688739.1:ENST00000690806.1:ENST00000686677.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.39677	4.748585	5.1004	0.0526991	0.0422707	0.149195	0.14912
chr17	38238003	38238103	6895232	0	-	0.39	(0.36,0.39]	chr17	700332	185	INTRON	INTRON	NPEPPSP1	ENSG00000274487.3	ENST00000649858.2:ENST00000685611.1:ENST00000692748.1:ENST00000685092.1:ENST00000620148.2:ENST00000685084.1:ENST00000690513.1:ENST00000684912.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	43	2	4.39677	4.748585	5.1004	0.0526991	0.0422707	0.149195	0.14912
chr1	1025648	1025747	971	0	+	0.727273	(0.58,1]	chr1	166	28	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.49116	4.748505	5.00585	0.0323732	0.0207449	0.121593	0.102713
chr1	31937785	31937818	437552	0	-	0.606061	(0.58,1]	chr1	52122	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000468531.1:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.49116	4.748505	5.00585	0.0323732	0.0207449	0.121593	0.102713
chr12	132521837	132521937	5352832	0	+	0.7	(0.58,1]	chr12	523658	100	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.49116	4.748505	5.00585	0.0323732	0.0207449	0.121593	0.102713
chr12	26649291	26649391	5399737	0	-	0.31	(0.29,0.33]	chr12	528625	169	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	3	184	2	3.00612	4.74817	6.49022	0.0168065	2.52154e-4	0.0884836	0.00535512
chr9	104829438	104829538	4361421	0	-	0.35	(0.33,0.36]	chr9	416347	3	SS3_PROX	SS3_PROX:INTRON	ABCA1	ENSG00000165029.17	ENST00000374736.8:ENST00000678995.1:ENST00000494467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.49572	4.747785	4.99985	0.103264	0.0127452	0.197541	0.0773423
chr5	145528612	145528712	2780740	0	-	0.4	(0.39,0.419]	chr5	272831	549	INTRON	INTRON	PRELID2	ENSG00000186314.12	ENST00000510259.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	43	2	4.39622	4.74764	5.09906	0.0535378	0.042449	0.150319	0.149195
chr3	13026294	13026394	1689399	0	-	0.59	(0.58,1]	chr3	176542	38	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	1	82	2	3.79235	4.74713	5.70191	0.00964351	0.00302484	0.0659937	0.0305643
chr1	81867938	81868038	170831	0	+	0.38	(0.36,0.39]	chr1	18909	305	INTRON	INTRON	ADGRL2	ENSG00000117114.21	ENST00000370728.5:ENST00000370730.5:ENST00000370721.5:ENST00000370723.5:ENST00000370725.5:ENST00000370727.5:ENST00000469377.6:ENST00000359929.7:ENST00000674419.1:ENST00000674442.1:ENST00000674489.1:ENST00000674209.1:ENST00000674307.1:ENST00000674168.1:ENST00000674407.1:ENST00000370717.6:ENST00000627151.2:ENST00000319517.10:ENST00000370713.5:ENST00000370715.5:ENST00000674492.1:ENST00000674373.1:ENST00000674410.1:ENST00000674367.1:ENST00000686636.1:ENST00000674333.1:ENST00000674393.1:ENST00000674208.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.6317	4.747095	4.86249	0.0950937	0.0181775	0.189021	0.0955836
chr15	98717773	98717872	6194022	0	+	0.363636	(0.36,0.39]	chr15	609659	93	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.6317	4.747095	4.86249	0.0950937	0.0181775	0.189021	0.0955836
chr5	90471143	90471243	2721377	0	-	0.39	(0.36,0.39]	chr5	267630	92	INTRON	INTRON	MBLAC2	ENSG00000176055.10	ENST00000316610.7	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.6317	4.747095	4.86249	0.0950937	0.0181775	0.189021	0.0955836
chr7	143383989	143384089	3510744	0	+	0.38	(0.36,0.39]	chr7	338481	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.6317	4.747095	4.86249	0.0950937	0.0181775	0.189021	0.0955836
chr8	25259148	25259248	3774830	0	+	0.39	(0.36,0.39]	chr8	363472	150	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000410074.5:ENST00000481100.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.6317	4.747095	4.86249	0.0950937	0.0181775	0.189021	0.0955836
chr20	38037562	38037661	7475028	0	+	0.454545	(0.45,0.485]	chr20	778372	31	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000495457.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	122	2	3.14761	4.7470799999999995	6.34655	0.00728373	0.00642055	0.0548996	0.0529785
chr15	74862837	74862937	6320596	0	-	0.35	(0.33,0.36]	chr15	623432	78	INTRON	INTRON	SCAMP2	ENSG00000140497.16	ENST00000268099.13:ENST00000563663.5:ENST00000563829.5:ENST00000569904.5:ENST00000565345.5:ENST00000562363.5:ENST00000564529.1:ENST00000566557.5:ENST00000569124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.65869	4.747035	4.83538	0.0679743	0.0248983	0.164413	0.114418
chr2	38324509	38324609	1123805	0	-	0.37	(0.36,0.39]	chr2	123019	51	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.69932	4.74695	4.79458	0.0877431	0.0207145	0.183437	0.102713
chr2	235998510	235998610	1067601	0	+	0.37	(0.36,0.39]	chr2	115748	295	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5:ENST00000418654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.69932	4.74695	4.79458	0.0877431	0.0207145	0.183437	0.102713
chr20	37082429	37082529	7558686	0	-	0.37	(0.36,0.39]	chr20	789399	4	SS3_PROX	SS3_PROX:INTRON	RBL1	ENSG00000080839.12	ENST00000373664.8:ENST00000344359.7:ENST00000527999.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.69932	4.74695	4.79458	0.0877431	0.0207145	0.183437	0.102713
chr7	22190228	22190328	3548510	0	-	0.41	(0.39,0.419]	chr7	342927	227	INTRON	INTRON	RAPGEF5	ENSG00000136237.19	ENST00000665637.1:ENST00000401957.6:ENST00000344041.10:ENST00000620335.4:ENST00000458533.5:ENST00000451559.1:ENST00000420196.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	124	2	3.8362	4.746824999999999	5.65745	0.0150537	0.00330348	0.0840434	0.0323993
chr10	103811050	103811150	4758215	0	-	0.6	(0.58,1]	chr10	454819	93	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	1	83	2	3.56821	4.746745	5.92528	0.0062948	0.00550024	0.0523832	0.0454065
chr16	81628687	81628787	6509584	0	+	0.62	(0.58,1]	chr16	645926	66	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	1	83	2	3.56821	4.746745	5.92528	0.0062948	0.00550024	0.0523832	0.0454065
chr16	72827185	72827285	6625673	0	-	0.42	(0.419,0.45]	chr16	663517	148	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2:ENST00000397992.5:ENST00000268489.10	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.56048	4.74669	4.9329	0.0716557	0.0337332	0.168159	0.133139
chr17	9469353	9469452	6853945	0	-	0.424242	(0.419,0.45]	chr17	694503	316	INTRON	INTRON	STX8	ENSG00000170310.15	ENST00000306357.9:ENST00000575858.5:ENST00000574431.5:ENST00000575294.6:ENST00000574775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.56048	4.74669	4.9329	0.0716557	0.0337332	0.168159	0.133139
chr3	10192186	10192286	1406800	0	+	0.42	(0.419,0.45]	chr3	151140	138	INTRON	INTRON	IRAK2	ENSG00000134070.5	ENST00000256458.5	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.56048	4.74669	4.9329	0.0716557	0.0337332	0.168159	0.133139
chr16	85386037	85386137	6516931	0	+	0.64	(0.58,1]	chr16	646391	267	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.18518	4.746325000000001	5.30747	0.0374658	0.0196049	0.139793	0.0955413
chr16	85396233	85396333	6517033	0	+	0.62	(0.58,1]	chr16	646391	369	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.18518	4.746325000000001	5.30747	0.0374658	0.0196049	0.139793	0.0955413
chr17	17686249	17686349	6688897	0	+	0.65	(0.58,1]	chr17	671338	13	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.18518	4.746325000000001	5.30747	0.0374658	0.0196049	0.139793	0.0955413
chr11	70741884	70741984	5061700	0	-	0.56	(0.523,0.58]	chr11	492701	240	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	110	2	3.58132	4.746295	5.91127	0.0193579	0.00111349	0.0954964	0.0152496
chr10	103691230	103691330	4757008	0	-	0.4	(0.39,0.419]	chr10	454779	132	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.63037	4.74615	4.86193	0.0963077	0.0182739	0.189169	0.0958352
chr3	130174187	130174287	1568364	0	+	0.4	(0.39,0.419]	chr3	166045	175	INTRON	INTRON	LINC02021	ENSG00000249846.7	ENST00000670900.1	lncRNA	lncRNA	lncRNA	lncRNA	0	41	2	4.63037	4.74615	4.86193	0.0963077	0.0182739	0.189169	0.0958352
chr6	506893	506993	3077209	0	-	0.41	(0.39,0.419]	chr6	299297	68	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.63037	4.74615	4.86193	0.0963077	0.0182739	0.189169	0.0958352
chr12	50135365	50135465	5228246	0	+	0.4	(0.39,0.419]	chr12	507568	117	INTRON	INTRON	ENSG00000272368	ENSG00000272368.2	ENST00000548468.2	lncRNA	lncRNA	lncRNA	lncRNA	0	41	2	4.69798	4.746	4.79402	0.088901	0.0208208	0.183874	0.102713
chr5	90470543	90470643	2721371	0	-	0.4	(0.39,0.419]	chr5	267630	86	INTRON	INTRON	MBLAC2	ENSG00000176055.10	ENST00000316610.7	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.69798	4.746	4.79402	0.088901	0.0208208	0.183874	0.102713
chr1	15053105	15053205	44943	0	+	0.59	(0.58,1]	chr1	4408	86	INTRON	INTRON	KAZN	ENSG00000189337.17	ENST00000636203.1:ENST00000376030.7:ENST00000491547.1:ENST00000503743.5:ENST00000361144.9:ENST00000400798.6:ENST00000376028.8:ENST00000400797.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.66416	4.745845	4.82753	0.0427798	0.0144381	0.13762	0.0833845
chr1	228156843	228156942	358155	0	+	0.606061	(0.58,1]	chr1	40434	65	INTRON	INTRON	GJC2	ENSG00000198835.4	ENST00000366714.3	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.66416	4.745845	4.82753	0.0427798	0.0144381	0.13762	0.0833845
chr17	29133293	29133393	6876496	0	-	0.6	(0.58,1]	chr17	698001	1	SS5_PROX	SS5_PROX:INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000590242.5:ENST00000528564.2:ENST00000528322.6:ENST00000585573.6:ENST00000533420.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.66416	4.745845	4.82753	0.0427798	0.0144381	0.13762	0.0833845
chr17	82801496	82801594	6818874	0	+	0.673469	(0.58,1]	chr17	689288	1	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000682107.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.66416	4.745845	4.82753	0.0427798	0.0144381	0.13762	0.0833845
chr18	76432352	76432452	7179443	0	-	0.61	(0.58,1]	chr18	730080	517	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.66416	4.745845	4.82753	0.0427798	0.0144381	0.13762	0.0833845
chr19	1160318	1160418	7305655	0	-	0.65	(0.58,1]	chr19	753054	53	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5:ENST00000587655.2	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.66416	4.745845	4.82753	0.0427798	0.0144381	0.13762	0.0833845
chr19	45265010	45265110	7272252	0	+	0.6	(0.58,1]	chr19	746868	1	SS5_PROX	SS5_PROX:INTRON	MARK4	ENSG00000007047.16	ENST00000587566.5:ENST00000262891.9:ENST00000300843.8:ENST00000592762.5:ENST00000590909.1:ENST00000588533.5:ENST00000588621.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.66416	4.745845	4.82753	0.0427798	0.0144381	0.13762	0.0833845
chr2	3286618	3286718	1080973	0	-	0.67	(0.58,1]	chr2	117633	39	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.66416	4.745845	4.82753	0.0427798	0.0144381	0.13762	0.0833845
chr21	43632286	43632381	7677396	0	-	0.6	(0.58,1]	chr21	802574	15	INTRON	INTRON	HSF2BP	ENSG00000160207.9	ENST00000291560.7:ENST00000443485.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.66416	4.745845	4.82753	0.0427798	0.0144381	0.13762	0.0833845
chr21	43750545	43750645	7624122	0	+	0.66	(0.58,1]	chr21	796771	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000498040.5:ENST00000481512.5:ENST00000490666.5:ENST00000467908.1:ENST00000343528.10:ENST00000398078.7:ENST00000468392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.66416	4.745845	4.82753	0.0427798	0.0144381	0.13762	0.0833845
chrX	1443114	1443214	7965924	0	-	0.63	(0.58,1]	chrX	834314	4	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9:ENST00000474865.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.66416	4.745845	4.82753	0.0427798	0.0144381	0.13762	0.0833845
chr2	226781939	226782039	1379695	0	-	0.22	[0,0.29]	chr2	147292	453	INTRON	INTRON	IRS1	ENSG00000169047.6	ENST00000305123.6	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.14609	4.745785	5.34548	0.0482299	0.0197148	0.159496	0.0958249
chr11	61703449	61703549	4862034	0	+	0.62	(0.58,1]	chr11	465896	226	INTRON	INTRON	DAGLA	ENSG00000134780.10	ENST00000257215.10:ENST00000540717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	85	2	4.18386	4.745665000000001	5.30747	0.0196049	9.90719e-4	0.0955413	0.0141138
chr2	24058514	24058613	725968	0	+	0.313131	(0.29,0.33]	chr2	84850	35	INTRON	INTRON	FKBP1B	ENSG00000119782.14	ENST00000380991.8:ENST00000438630.5:ENST00000380986.9:ENST00000496149.5:ENST00000452109.1:ENST00000421839.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	89	2	3.66355	4.74561	5.82767	0.0124924	0.00571018	0.0761905	0.0467736
chr16	18374731	18374831	6557706	0	-	0.64	(0.58,1]	chr16	653450	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NPIPA9:PKD1P5	ENSG00000233024.7:ENSG00000254681.6	ENST00000545114.5:ENST00000427999.6:ENST00000546267.5:ENST00000533010.6:ENST00000532415.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	1	82	2	3.85993	4.7455549999999995	5.63118	0.0109983	0.00251049	0.0708586	0.026941
chr17	77469155	77469255	6805070	0	+	0.58	(0.523,0.58]	chr17	686810	22	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	119	2	3.1794	4.7455549999999995	6.31171	0.00624033	0.00594629	0.0506158	0.0497314
chr13	113330278	113330378	5753233	0	-	0.61	(0.58,1]	chr13	564094	38	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	1	82	2	3.72143	4.745385	5.76934	0.00849371	0.00366718	0.0617717	0.0346803
chr1	44802183	44802259	114929	0	+	0.513158	(0.485,0.523]	chr1	14240	3	SS5_PROX	SS5_PROX:INTRON	PLK3	ENSG00000173846.13	ENST00000372201.5:ENST00000465443.5:ENST00000476731.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	108	2	3.4264	4.74514	6.06388	0.025039	7.70737e-4	0.10758	0.0118331
chr19	6692623	6692723	7322668	0	-	0.45	(0.419,0.45]	chr19	756436	3	SS5_PROX	SS5_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000695653.1:ENST00000695654.1:ENST00000695692.1:ENST00000695652.1:ENST00000695655.1:ENST00000598805.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	136	2	2.71246	4.74513	6.7778	0.0223142	0.00448826	0.108193	0.0436138
chr6	37922798	37922898	2909873	0	+	0.45	(0.419,0.45]	chr6	285645	72	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	1	116	2	3.08499	4.74497	6.40495	0.0509743	5.72149e-4	0.148503	0.00960229
chr14	89336454	89336554	6027467	0	-	0.49	(0.485,0.523]	chr14	591456	28	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	91	2	3.38908	4.74456	6.10004	0.0107186	0.00860355	0.0700744	0.0623467
chr12	50531925	50532025	5229725	0	+	0.46	(0.45,0.485]	chr12	507705	263	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.59225	4.74455	4.89685	0.0614781	0.0259502	0.158506	0.116361
chr19	16369353	16369452	7343623	0	-	0.474747	(0.45,0.485]	chr19	760668	70	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.59225	4.74455	4.89685	0.0614781	0.0259502	0.158506	0.116361
chrX	133655335	133655435	8112709	0	-	0.35	(0.33,0.36]	chrX	845480	584	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000692074.1:ENST00000667662.1:ENST00000666017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	125	2	3.50523	4.744515	5.9838	0.0123642	0.00317804	0.0758857	0.031614
chr2	65401874	65401974	1171874	0	-	0.44	(0.419,0.45]	chr2	127582	213	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	2	128	2	3.39352	4.74435	6.09518	0.0138177	0.00473168	0.0803169	0.0413976
chr10	18555069	18555169	4642279	0	-	0.38	(0.36,0.39]	chr10	443321	27	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.20082	4.7443	5.28778	0.0581116	0.0407706	0.175217	0.135868
chr16	81645057	81645157	6509748	0	+	0.39	(0.36,0.39]	chr16	645926	230	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.20082	4.7443	5.28778	0.0581116	0.0407706	0.175217	0.135868
chr13	98575294	98575394	5748274	0	-	0.27	[0,0.29]	chr13	563357	534	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	116	2	3.54064	4.744235	5.94783	0.00660506	0.00221307	0.0539418	0.0246879
chr12	12170664	12170763	5373197	0	-	0.383838	(0.36,0.39]	chr12	526986	50	INTRON	INTRON	LRP6	ENSG00000070018.9	ENST00000261349.9:ENST00000538239.5:ENST00000543091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.56076	4.7440549999999995	4.92735	0.103289	0.0160072	0.197541	0.0894586
chr2	72699810	72699910	1186938	0	-	0.38	(0.36,0.39]	chr2	128741	1238	INTRON	INTRON	EXOC6B	ENSG00000144036.16	ENST00000272427.11:ENST00000634650.1:ENST00000410104.1:ENST00000410112.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.56076	4.7440549999999995	4.92735	0.103289	0.0160072	0.197541	0.0894586
chr4	56437419	56437517	2046041	0	+	0.387755	(0.36,0.39]	chr4	209256	7	INTRON	INTRON	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000505164.5:ENST00000504188.1:ENST00000399688.7:ENST00000510584.1:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.56076	4.7440549999999995	4.92735	0.103289	0.0160072	0.197541	0.0894586
chr4	150470535	150470633	2344761	0	-	0.387755	(0.36,0.39]	chr4	234698	24	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000503716.5:ENST00000509835.5:ENST00000648823.1:ENST00000648626.1:ENST00000651695.1:ENST00000648878.1:ENST00000651035.1:ENST00000507224.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.56076	4.7440549999999995	4.92735	0.103289	0.0160072	0.197541	0.0894586
chrX	139909453	139909553	8119727	0	-	0.39	(0.36,0.39]	chrX	845912	773	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.56076	4.7440549999999995	4.92735	0.103289	0.0160072	0.197541	0.0894586
chr22	28887459	28887558	7705315	0	+	0.343434	(0.33,0.36]	chr22	806317	30	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7	protein_coding	protein_coding	protein_coding	protein_coding	1	111	2	3.10933	4.743995	6.37866	0.0441902	4.63001e-4	0.140379	0.00825119
chr20	49149386	49149486	7572610	0	-	0.4	(0.39,0.419]	chr20	791289	131	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	4	173	2	2.79845	4.743875	6.6893	0.00825348	0.00448396	0.0595165	0.0436138
chr15	34408934	34409034	6217547	0	-	0.37	(0.36,0.39]	chr15	612287	8	INTRON	INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000569781.1:ENST00000565885.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.72331	4.743605	4.7639	0.0811309	0.0236929	0.177951	0.111208
chr15	41482174	41482273	6084610	0	+	0.373737	(0.36,0.39]	chr15	598327	16	UTR3	UTR3:EXON_MRNA	RTF1	ENSG00000137815.15	ENST00000389629.9	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.72331	4.743605	4.7639	0.0811309	0.0236929	0.177951	0.111208
chr16	18520096	18520160	6559084	0	-	0.375	(0.36,0.39]	chr16	653700	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000381474.7:ENST00000564991.5:ENST00000621364.4:ENST00000622306.5:ENST00000543392.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.72331	4.743605	4.7639	0.0811309	0.0236929	0.177951	0.111208
chr16	78989111	78989211	6504310	0	+	0.38	(0.36,0.39]	chr16	645717	2088	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.72331	4.743605	4.7639	0.0811309	0.0236929	0.177951	0.111208
chr16	81001834	81001933	6647681	0	-	0.373737	(0.36,0.39]	chr16	664903	1	INTRON	INTRON	CMC2	ENSG00000103121.9	ENST00000219400.8:ENST00000486645.5:ENST00000570195.5:ENST00000569187.5:ENST00000570086.5:ENST00000565650.5:ENST00000567593.5:ENST00000568228.5:ENST00000565914.5:ENST00000565108.5:ENST00000565925.5:ENST00000564174.5:ENST00000565613.5:ENST00000562713.3:ENST00000562828.5:ENST00000630396.1:ENST00000565514.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.72331	4.743605	4.7639	0.0811309	0.0236929	0.177951	0.111208
chr5	14819841	14819941	2613819	0	-	0.38	(0.36,0.39]	chr5	260341	318	INTRON	INTRON	ANKH	ENSG00000154122.14	ENST00000284268.8:ENST00000513115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.72331	4.743605	4.7639	0.0811309	0.0236929	0.177951	0.111208
chr5	61153940	61154038	2427825	0	+	0.377551	(0.36,0.39]	chr5	241949	11	UTR3	UTR3:EXON_MRNA	NDUFAF2	ENSG00000164182.12	ENST00000678452.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	41	2	4.72331	4.743605	4.7639	0.0811309	0.0236929	0.177951	0.111208
chr6	36066507	36066606	2904686	0	+	0.363636	(0.36,0.39]	chr6	284907	68	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000622903.4:ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5:ENST00000472333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.72331	4.743605	4.7639	0.0811309	0.0236929	0.177951	0.111208
chr7	143386390	143386486	3510769	0	+	0.677083	(0.58,1]	chr7	338486	18	INTRON	INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	204	2	4.33918	4.743505	5.14783	0.00307476	4.60275e-5	0.03541	0.0015485
chr1	17683875	17683975	55050	0	+	0.58	(0.523,0.58]	chr1	5603	189	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.5249	4.743435	4.96197	0.0521137	0.0266135	0.148503	0.118113
chr14	104791109	104791207	6057803	0	-	0.561224	(0.523,0.58]	chr14	594709	49	INTRON	INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000683722.1:ENST00000555528.5:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000554848.5:ENST00000682269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.5249	4.743435	4.96197	0.0521137	0.0266135	0.148503	0.118113
chr17	4841132	4841231	6671964	0	+	0.555556	(0.523,0.58]	chr17	668609	71	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.5249	4.743435	4.96197	0.0521137	0.0266135	0.148503	0.118113
chr18	6139793	6139893	7111113	0	-	0.58	(0.523,0.58]	chr18	723852	11	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000400105.6:ENST00000317931.12:ENST00000400104.7	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.5249	4.743435	4.96197	0.0521137	0.0266135	0.148503	0.118113
chr2	239342986	239343086	1392140	0	-	0.54	(0.523,0.58]	chr2	148752	185	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.5249	4.743435	4.96197	0.0521137	0.0266135	0.148503	0.118113
chr2	3297696	3297796	1081084	0	-	0.48	(0.45,0.485]	chr2	117633	150	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	112	2	2.94003	4.743355	6.54668	0.0561701	2.40818e-4	0.154188	0.00517788
chr1	45017376	45017474	462677	0	-	0.408163	(0.39,0.419]	chr1	55594	11	UTR3	UTR3:EXON_MRNA	ZSWIM5	ENSG00000162415.7	ENST00000359600.6	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.20027	4.7433499999999995	5.28643	0.0583327	0.041475	0.175217	0.136301
chr10	18558866	18558966	4642317	0	-	0.4	(0.39,0.419]	chr10	443321	65	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.20027	4.7433499999999995	5.28643	0.0583327	0.041475	0.175217	0.136301
chr22	32817698	32817798	7717786	0	+	0.4	(0.39,0.419]	chr22	807776	152	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.20027	4.7433499999999995	5.28643	0.0583327	0.041475	0.175217	0.136301
chr1	120464139	120464227	224747	0	+	0.465909	(0.45,0.485]	chr1	24841	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF8	ENSG00000270231.4	ENST00000652355.1:ENST00000583271.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	43	2	4.32491	4.7432	5.16149	0.0427653	0.0418883	0.149021	0.13762
chr2	65366389	65366489	1171512	0	-	0.46	(0.45,0.485]	chr2	127555	4	SS5_PROX	SS5_PROX:INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000443619.6:ENST00000452315.5:ENST00000474228.1:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.32491	4.7432	5.16149	0.0427653	0.0418883	0.149021	0.13762
chr7	92683524	92683624	3637434	0	-	0.48	(0.45,0.485]	chr7	350310	116	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000473078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.32491	4.7432	5.16149	0.0427653	0.0418883	0.149021	0.13762
chr14	54626191	54626291	5820035	0	+	0.37	(0.36,0.39]	chr14	569049	577	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	113	2	3.26582	4.743185	6.22055	0.0369624	8.14665e-4	0.129594	0.0123172
chr20	62273706	62273806	7506845	0	+	0.37	(0.36,0.39]	chr20	782711	3	SS5_PROX	SS5_PROX:INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	93	2	3.65573	4.7431350000000005	5.83054	0.0182399	0.0067964	0.0921579	0.0524192
chr16	12235759	12235859	6392226	0	+	0.4	(0.39,0.419]	chr16	631965	357	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.55943	4.74311	4.92679	0.104562	0.0160946	0.19835	0.0896852
chr20	17657895	17657995	7532192	0	-	0.5	(0.485,0.523]	chr20	786036	144	INTRON	INTRON	RRBP1	ENSG00000125844.17	ENST00000360807.8:ENST00000377807.6:ENST00000246043.8:ENST00000377813.6:ENST00000455029.3:ENST00000495501.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	143	2	3.10948	4.742955	6.37643	0.0052506	0.00432966	0.0476984	0.0389538
chr5	10708571	10708671	2612122	0	-	0.44	(0.419,0.45]	chr5	260254	246	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	96	2	3.39073	4.742955	6.09518	0.0138177	0.0128682	0.0803169	0.0778066
chr16	11114114	11114214	6387018	0	+	0.55	(0.523,0.58]	chr16	631735	527	INTRON	INTRON	CLEC16A	ENSG00000038532.16	ENST00000409790.6:ENST00000409552.4:ENST00000465491.5:ENST00000646363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.65157	4.742905	4.83424	0.0787008	0.0144272	0.175203	0.0833845
chr17	38727496	38727596	6729358	0	+	0.56	(0.523,0.58]	chr17	676371	20	UTR3	UTR3:EXON_MRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.65157	4.742905	4.83424	0.0787008	0.0144272	0.175203	0.0833845
chr17	82565995	82566092	6817241	0	+	0.57732000000000006	(0.523,0.58]	chr17	689051	21	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1:ENST00000531030.5:ENST00000526383.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.65157	4.742905	4.83424	0.0787008	0.0144272	0.175203	0.0833845
chr19	5814609	5814708	7195532	0	+	0.545455	(0.523,0.58]	chr19	733105	88	INTRON	INTRON	NRTN	ENSG00000171119.3	ENST00000303212.3	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.65157	4.742905	4.83424	0.0787008	0.0144272	0.175203	0.0833845
chr20	44400939	44401038	7482919	0	+	0.525253	(0.523,0.58]	chr20	779625	99	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.65157	4.742905	4.83424	0.0787008	0.0144272	0.175203	0.0833845
chr4	139730370	139730467	2134666	0	+	0.536082	(0.523,0.58]	chr4	216817	2	UTR3	UTR3:EXON_MRNA:INTRON	MGST2	ENSG00000085871.9	ENST00000616265.4:ENST00000515137.5:ENST00000503816.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.65157	4.742905	4.83424	0.0787008	0.0144272	0.175203	0.0833845
chr13	32172068	32172168	5562369	0	+	0.4	(0.39,0.419]	chr13	548646	4	INTRON	INTRON	FRY	ENSG00000073910.23	ENST00000645780.1:ENST00000647500.1:ENST00000642040.1:ENST00000542859.6	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.72276	4.742665000000001	4.76257	0.0822354	0.0238104	0.179396	0.111436
chr3	60221730	60221830	1795824	0	-	0.41	(0.39,0.419]	chr3	186807	1410	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.72276	4.742665000000001	4.76257	0.0822354	0.0238104	0.179396	0.111436
chr3	60785846	60785946	1801470	0	-	0.41	(0.39,0.419]	chr3	186822	199	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5:ENST00000490952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.72276	4.742665000000001	4.76257	0.0822354	0.0238104	0.179396	0.111436
chr20	49074185	49074284	7491652	0	+	0.353535	(0.33,0.36]	chr20	781040	11	INTRON	INTRON	CSE1L	ENSG00000124207.17	ENST00000396192.7:ENST00000262982.3	protein_coding	protein_coding	protein_coding	protein_coding	1	93	2	3.94543	4.742545	5.53966	0.0251076	0.0031765	0.107672	0.0316024
chr20	20591714	20591814	7535138	0	-	0.35	(0.33,0.36]	chr20	786387	4	SS3_PROX	SS3_PROX:INTRON	RALGAPA2	ENSG00000188559.16	ENST00000202677.12:ENST00000430436.5:ENST00000495793.2	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.102	4.74242	5.38284	0.0642879	0.0317908	0.184676	0.121384
chr12	24011226	24011326	5389143	0	-	0.36	(0.33,0.36]	chr12	528209	603	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000646273.1:ENST00000659413.1:ENST00000536729.2:ENST00000446891.7	protein_coding	protein_coding	protein_coding	protein_coding	1	108	2	4.53261	4.74212	4.95163	0.0583482	6.75978e-4	0.155373	0.0108163
chr12	64631402	64631502	5250574	0	+	0.52	(0.485,0.523]	chr12	511993	84	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.52142	4.741905	4.96239	0.0518747	0.0273555	0.148503	0.119337
chr15	67058939	67059039	6308081	0	-	0.45	(0.419,0.45]	chr15	621988	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000259347	ENSG00000259347.8	ENST00000692307.1:ENST00000558071.2:ENST00000636067.1	lncRNA	lncRNA	lncRNA	lncRNA	1	107	2	2.92337	4.741775	6.56018	0.0333415	0.00648928	0.133139	0.0532359
chr8	22388060	22388159	3770229	0	+	0.424242	(0.419,0.45]	chr8	362727	82	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	5	203	2	3.03601	4.741745	6.44748	0.00782663	0.00383765	0.0592048	0.0359003
chr11	70876517	70876617	5063052	0	-	0.43	(0.419,0.45]	chr11	492728	35	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000645599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	123	2	3.72389	4.741625	5.75936	0.0193862	0.00285253	0.0955413	0.0294017
chr20	33017758	33017858	7457472	0	+	0.47	(0.45,0.485]	chr20	776396	1	SS3_PROX	SS3_PROX:INTRON	BPIFB2	ENSG00000078898.7	ENST00000170150.4	protein_coding	protein_coding	protein_coding	protein_coding	3	323	2	4.63004	4.74151	4.85298	0.00205133	1.19663e-4	0.0284183	0.00313621
chr2	134452132	134452231	898769	0	+	0.575758	(0.523,0.58]	chr2	101298	34	UTR3	UTR3:EXON_MRNA	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	6	207	2	3.0254	4.7414499999999995	6.4575	0.0045605	0.00237098	0.0438198	0.0259479
chr10	132711355	132711454	4618581	0	+	0.545455	(0.523,0.58]	chr10	441181	5	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000487614.1:ENST00000498337.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.58058	4.7414000000000005	4.90222	0.0860403	0.0125132	0.181766	0.0765738
chr17	38746067	38746167	6895636	0	-	0.55	(0.523,0.58]	chr17	700402	2	SS5_PROX	SS5_PROX:INTRON	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000611883.4:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	1	107	2	3.2478	4.7414000000000005	6.235	0.0335771	4.59688e-4	0.124319	0.00821903
chr17	82910000	82910097	6819995	0	+	0.556701	(0.523,0.58]	chr17	689431	3	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.58058	4.7414000000000005	4.90222	0.0860403	0.0125132	0.181766	0.0765738
chr2	239988496	239988591	1393710	0	-	0.547368	(0.523,0.58]	chr2	148851	7	UTR3	UTR3:EXON_MRNA:INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.58058	4.7414000000000005	4.90222	0.0860403	0.0125132	0.181766	0.0765738
chr2	239988612	239988705	1393712	0	-	0.526882	(0.523,0.58]	chr2	148853	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5:ENST00000444548.6:ENST00000448880.6:ENST00000677490.1:ENST00000307300.8:ENST00000678898.1:ENST00000677368.1:ENST00000677263.1:ENST00000678289.1:ENST00000676784.1:ENST00000414580.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.58058	4.7414000000000005	4.90222	0.0860403	0.0125132	0.181766	0.0765738
chr4	1337945	1338040	1995424	0	+	0.578947	(0.523,0.58]	chr4	203283	11	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000514708.5:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1:ENST00000512289.5:ENST00000506530.5:ENST00000503162.1:ENST00000515766.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.58058	4.7414000000000005	4.90222	0.0860403	0.0125132	0.181766	0.0765738
chr7	1062395	1062495	3526851	0	-	0.53	(0.523,0.58]	chr7	340585	72	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.58058	4.7414000000000005	4.90222	0.0860403	0.0125132	0.181766	0.0765738
chr7	2046713	2046813	3530699	0	-	0.55	(0.523,0.58]	chr7	340995	317	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.58058	4.7414000000000005	4.90222	0.0860403	0.0125132	0.181766	0.0765738
chr7	139700647	139700747	3723152	0	-	0.53	(0.523,0.58]	chr7	357498	686	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.58058	4.7414000000000005	4.90222	0.0860403	0.0125132	0.181766	0.0765738
chr8	22005986	22006086	3768700	0	+	0.57	(0.523,0.58]	chr8	362335	10	UTR3	UTR3:EXON_MRNA	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000433566.8	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.58058	4.7414000000000005	4.90222	0.0860403	0.0125132	0.181766	0.0765738
chrX	31201285	31201384	8003400	0	-	0.525253	(0.523,0.58]	chrX	836856	53	INTRON	INTRON	DMD	ENSG00000198947.18	ENST00000378723.7:ENST00000681989.1:ENST00000358062.6:ENST00000357033.9:ENST00000619831.5:ENST00000378677.6:ENST00000359836.5:ENST00000378707.7:ENST00000541735.5:ENST00000343523.7:ENST00000684130.1:ENST00000680961.1:ENST00000682238.1:ENST00000683675.1:ENST00000680355.1:ENST00000682322.1:ENST00000682600.1:ENST00000680162.2:ENST00000679641.1:ENST00000680557.1:ENST00000620040.5:ENST00000680768.2:ENST00000683709.1:ENST00000682769.1:ENST00000378702.8:ENST00000474231.5:ENST00000361471.8:ENST00000683509.1:ENST00000378680.6:ENST00000681153.1:ENST00000683957.1:ENST00000378705.3:ENST00000681654.1:ENST00000681334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.58058	4.7414000000000005	4.90222	0.0860403	0.0125132	0.181766	0.0765738
chr12	26713234	26713331	5400391	0	-	0.515464	(0.485,0.523]	chr12	528698	16	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000540791.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.65198	4.741350000000001	4.83072	0.0783889	0.0148956	0.175203	0.0847741
chr15	79339819	79339919	6160741	0	+	0.49	(0.485,0.523]	chr15	606406	171	INTRON	INTRON	TMED3	ENSG00000166557.14	ENST00000424155.6:ENST00000536821.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.65198	4.741350000000001	4.83072	0.0783889	0.0148956	0.175203	0.0847741
chr18	36015291	36015391	7145076	0	-	0.52	(0.485,0.523]	chr18	726770	216	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.65198	4.741350000000001	4.83072	0.0783889	0.0148956	0.175203	0.0847741
chr19	38680522	38680622	7258169	0	+	0.49	(0.485,0.523]	chr19	743980	319	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	40	2	4.65198	4.741350000000001	4.83072	0.0783889	0.0148956	0.175203	0.0847741
chr2	239086516	239086606	1389540	0	-	0.511111	(0.485,0.523]	chr2	148609	2	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000487617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.65198	4.741350000000001	4.83072	0.0783889	0.0148956	0.175203	0.0847741
chr3	130099954	130100050	1914803	0	-	0.5	(0.485,0.523]	chr3	194498	2	INTRON	INTRON	FAM86HP	ENSG00000253540.6	ENST00000693359.1:ENST00000691477.1:ENST00000692815.1:ENST00000689862.1:ENST00000690856.1:ENST00000687597.1:ENST00000689096.1:ENST00000689836.1:ENST00000691189.1:ENST00000515245.6:ENST00000689626.1:ENST00000500074.3:ENST00000686686.1:ENST00000691825.1:ENST00000688071.1:ENST00000687284.1:ENST00000511564.5:ENST00000513466.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	40	2	4.65198	4.741350000000001	4.83072	0.0783889	0.0148956	0.175203	0.0847741
chr8	38381089	38381189	3967573	0	-	0.49	(0.485,0.523]	chr8	379198	1	SS5_PROX	SS5_PROX:INTRON	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5:ENST00000316985.7:ENST00000529223.1:ENST00000534155.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.65198	4.741350000000001	4.83072	0.0783889	0.0148956	0.175203	0.0847741
chr9	116572999	116573099	4375346	0	-	0.49	(0.485,0.523]	chr9	418111	851	INTRON	INTRON	ASTN2	ENSG00000148219.18	ENST00000313400.9:ENST00000361209.6:ENST00000373986.7:ENST00000341734.8:ENST00000288520.9:ENST00000361477.8	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.65198	4.741350000000001	4.83072	0.0783889	0.0148956	0.175203	0.0847741
chr10	24239637	24239737	4464904	0	+	0.39	(0.36,0.39]	chr10	427245	3	SS5_PROX	SS5_PROX:INTRON	KIAA1217	ENSG00000120549.19	ENST00000376462.5:ENST00000376452.7:ENST00000430453.6:ENST00000458595.5:ENST00000376456.8:ENST00000376454.8:ENST00000635504.1:ENST00000438429.5	protein_coding	protein_coding	protein_coding	protein_coding	1	93	2	3.74547	4.74129	5.73711	0.0210765	0.00550271	0.0996078	0.0454065
chr2	3297397	3297497	1081081	0	-	0.45	(0.419,0.45]	chr2	117633	147	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	127	2	3.26754	4.74116	6.21478	0.011428	0.00641295	0.0723462	0.0503748
chr6	107319004	107319104	3223431	0	-	0.37	(0.36,0.39]	chr6	312569	444	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9:ENST00000369031.4	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.48559	4.741155	4.99672	0.0604395	0.036329	0.158506	0.139793
chr9	100124085	100124185	4198199	0	+	0.37	(0.36,0.39]	chr9	398909	191	INTRON	INTRON	INVS	ENSG00000119509.13	ENST00000262457.7:ENST00000496467.5:ENST00000262456.6:ENST00000374921.3:ENST00000466647.5:ENST00000460636.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.48559	4.741155	4.99672	0.0604395	0.036329	0.158506	0.139793
chr20	8455846	8455946	7429826	0	+	0.43	(0.419,0.45]	chr20	773698	838	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	130	2	2.92212	4.74115	6.56018	0.0141969	0.00648928	0.0833845	0.0532359
chr12	6767250	6767344	5165688	0	+	0.553191	(0.523,0.58]	chr12	502315	1	INTRON	INTRON	PTMS	ENSG00000159335.18	ENST00000540667.5:ENST00000309083.8:ENST00000389462.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.71922	4.74106	4.7629	0.0721601	0.0167014	0.168159	0.0917029
chr19	46744858	46744957	7391420	0	-	0.545455	(0.523,0.58]	chr19	767888	42	INTRON	INTRON	STRN4	ENSG00000090372.15	ENST00000391910.7:ENST00000263280.11:ENST00000539396.5:ENST00000435164.6:ENST00000594704.5:ENST00000593979.6:ENST00000597063.6:ENST00000596012.2:ENST00000600710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.71922	4.74106	4.7629	0.0721601	0.0167014	0.168159	0.0917029
chr2	72967623	72967723	1188468	0	-	0.56	(0.523,0.58]	chr2	128797	3	SS3_PROX	SS3_PROX:INTRON	SFXN5	ENSG00000144040.13	ENST00000272433.7:ENST00000461352.5:ENST00000474528.5:ENST00000495208.5:ENST00000482289.5:ENST00000490056.5:ENST00000411783.5:ENST00000410065.5:ENST00000482542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.71922	4.74106	4.7629	0.0721601	0.0167014	0.168159	0.0917029
chr7	2045214	2045314	3530684	0	-	0.58	(0.523,0.58]	chr7	340995	302	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.71922	4.74106	4.7629	0.0721601	0.0167014	0.168159	0.0917029
chr16	89302234	89302333	6659831	0	-	0.494949	(0.485,0.523]	chr16	666658	2	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	92	2	4.13042	4.741045	5.35167	0.0294163	0.00166514	0.116079	0.0203119
chr11	68264756	68264854	5057267	0	-	0.479592	(0.45,0.485]	chr11	492361	5	INTRON	INTRON	C11orf24	ENSG00000171067.11	ENST00000304271.11:ENST00000533310.5:ENST00000530166.5:ENST00000527280.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	125	2	4.00556	4.74102	5.47648	0.00992252	0.0039628	0.0671959	0.0368027
chr11	121479442	121479541	4953927	0	+	0.545455	(0.523,0.58]	chr11	478664	8	INTRON	INTRON	SORL1	ENSG00000137642.13	ENST00000260197.12:ENST00000532451.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.13061	4.740925	5.35124	0.0533354	0.0295772	0.167062	0.116079
chr14	54678720	54678820	5820562	0	+	0.57	(0.523,0.58]	chr14	569059	95	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1:ENST00000555091.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.13061	4.740925	5.35124	0.0533354	0.0295772	0.167062	0.116079
chr17	4853218	4853318	6672085	0	+	0.58	(0.523,0.58]	chr17	668609	192	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	45	2	4.13061	4.740925	5.35124	0.0533354	0.0295772	0.167062	0.116079
chr9	83246618	83246718	4322997	0	-	0.4	(0.39,0.419]	chr9	413050	21	UTR3	UTR3:EXON_MRNA:INTRON	FRMD3	ENSG00000172159.16	ENST00000376438.5:ENST00000376434.5:ENST00000328788.5:ENST00000304195.8:ENST00000621208.4	protein_coding	protein_coding	protein_coding	protein_coding	2	254	2	4.38883	4.740805	5.09278	0.00580971	1.56373e-4	0.0503279	0.00380116
chr15	98788098	98788198	6194727	0	+	0.42	(0.419,0.45]	chr15	609667	32	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1:ENST00000557938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	161	2	2.47479	4.74078	7.00677	0.068283	1.1216e-4	0.164651	0.00298349
chr3	49743219	49743319	1773609	0	-	0.43	(0.419,0.45]	chr3	183894	44	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000479464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.29342	4.74073	5.18804	0.0526662	0.051668	0.167062	0.148503
chr8	80044508	80044608	4004816	0	-	0.43	(0.419,0.45]	chr8	382807	3	SS3_PROX	SS3_PROX:INTRON	TPD52	ENSG00000076554.16	ENST00000518937.6:ENST00000379096.9:ENST00000448733.3:ENST00000520527.5:ENST00000517427.5:ENST00000517462.6:ENST00000379097.7:ENST00000519303.6:ENST00000523395.5:ENST00000523193.5:ENST00000523319.6:ENST00000521354.5:ENST00000520877.5:ENST00000518517.5:ENST00000524194.5:ENST00000521241.6:ENST00000517445.5:ENST00000523753.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	44	2	4.29342	4.74073	5.18804	0.0526662	0.051668	0.167062	0.148503
chr9	116861182	116861282	4378241	0	-	0.45	(0.419,0.45]	chr9	418172	400	INTRON	INTRON	ASTN2	ENSG00000148219.18	ENST00000313400.9:ENST00000361209.6:ENST00000373986.7:ENST00000361477.8	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.29342	4.74073	5.18804	0.0526662	0.051668	0.167062	0.148503
chr17	51106170	51106270	6929069	0	-	0.49	(0.485,0.523]	chr17	706046	261	INTRON	INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000505279.5:ENST00000357122.8	protein_coding	protein_coding	protein_coding	protein_coding	1	99	2	3.02337	4.7406500000000005	6.45793	0.023933	0.00452302	0.111785	0.0436138
chr2	20795994	20796094	1100140	0	-	0.33	(0.29,0.33]	chr2	119914	52	INTRON	INTRON	LDAH	ENSG00000118961.15	ENST00000619656.4:ENST00000541941.5:ENST00000440866.6:ENST00000435420.6:ENST00000403006.6:ENST00000237822.8:ENST00000381090.7:ENST00000626491.2:ENST00000432947.1:ENST00000412261.5:ENST00000402479.6:ENST00000419825.2	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.58769	4.740550000000001	4.89341	0.0806047	0.0135896	0.177452	0.0811697
chr16	29299092	29299191	6433829	0	+	0.484848	(0.45,0.485]	chr16	636749	184	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1	lncRNA	lncRNA	lncRNA	lncRNA	0	42	2	4.41963	4.740505	5.06138	0.0492008	0.0355247	0.146142	0.137983
chr9	105355916	105356014	4206714	0	+	0.459184	(0.45,0.485]	chr9	399508	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SLC44A1	ENSG00000070214.16	ENST00000374724.1:ENST00000374723.5:ENST00000470972.5:ENST00000374720.8:ENST00000607701.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.41963	4.740505	5.06138	0.0492008	0.0355247	0.146142	0.137983
chr16	81631283	81631382	6509610	0	+	0.585859	(0.58,1]	chr16	645926	92	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	1	82	2	3.64686	4.740305	5.83375	0.00751249	0.00447535	0.0576451	0.0398484
chr12	89431458	89431558	5468636	0	-	0.33	(0.29,0.33]	chr12	537656	21	INTRON	INTRON	POC1B	ENSG00000139323.14	ENST00000313546.8:ENST00000393179.8:ENST00000546740.5:ENST00000549035.1:ENST00000547496.5:ENST00000548715.5:ENST00000549504.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.72635	4.740235	4.75412	0.0672935	0.0180435	0.163263	0.0952934
chr15	52777700	52777800	6267295	0	-	0.39	(0.36,0.39]	chr15	617751	195	INTRON	INTRON	ONECUT1	ENSG00000169856.9	ENST00000305901.7:ENST00000561401.3:ENST00000560699.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	160	2	3.15995	4.740235	6.32052	0.0225967	6.27541e-4	0.102982	0.0102323
chr10	86824073	86824173	4538682	0	+	0.41	(0.39,0.419]	chr10	432895	668	INTRON	INTRON	BMPR1A	ENSG00000107779.14	ENST00000638429.1:ENST00000372037.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.48504	4.740209999999999	4.99538	0.0613573	0.0364893	0.158506	0.139793
chr21	35744636	35744735	7664409	0	-	0.393939	(0.39,0.419]	chr21	801112	894	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000475045.6	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.48504	4.740209999999999	4.99538	0.0613573	0.0364893	0.158506	0.139793
chr4	39068384	39068484	2031970	0	+	0.41	(0.39,0.419]	chr4	207419	42	INTRON	INTRON	KLHL5	ENSG00000109790.18	ENST00000261425.7:ENST00000508137.6:ENST00000504108.7:ENST00000261426.10:ENST00000381930.8:ENST00000514399.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.48504	4.740209999999999	4.99538	0.0613573	0.0364893	0.158506	0.139793
chr8	130417048	130417148	4083372	0	-	0.42	(0.419,0.45]	chr8	388188	147	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000520927.5:ENST00000524299.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	105	2	4.3399	4.7402	5.1405	0.0550015	0.00133187	0.153337	0.0173276
chr22	33831943	33832043	7801985	0	-	0.5	(0.485,0.523]	chr22	817639	700	INTRON	INTRON	LARGE1	ENSG00000133424.22	ENST00000397394.8:ENST00000413114.6:ENST00000676070.1:ENST00000674543.1:ENST00000676370.1:ENST00000354992.7:ENST00000402320.6:ENST00000675416.1:ENST00000676132.1:ENST00000674789.1:ENST00000675277.1:ENST00000434071.6:ENST00000432776.6:ENST00000423375.2:ENST00000430220.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.581	4.739850000000001	4.8987	0.085711	0.0129327	0.181766	0.0778105
chr6	2835755	2835855	3085377	0	-	0.49	(0.485,0.523]	chr6	299539	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SERPINB1	ENSG00000021355.13	ENST00000380739.6:ENST00000468511.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.581	4.739850000000001	4.8987	0.085711	0.0129327	0.181766	0.0778105
chr2	134450937	134451037	898757	0	+	0.58	(0.523,0.58]	chr2	101298	22	UTR3	UTR3:EXON_MRNA	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	2	120	2	3.56966	4.739815	5.90997	0.012016	0.00224097	0.0743424	0.024843
chr17	1560798	1560898	6830757	0	-	0.45	(0.419,0.45]	chr17	690604	2	SS5_PROX	SS5_PROX:INTRON	PITPNA	ENSG00000174238.16	ENST00000313486.12:ENST00000575288.5:ENST00000576722.5:ENST00000576761.5:ENST00000576010.6:ENST00000573231.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.38804	4.739685	5.09133	0.0586308	0.0451818	0.155565	0.154539
chr21	39207454	39207551	7671287	0	-	0.42268	(0.419,0.45]	chr21	801525	8	INTRON	INTRON	BRWD1	ENSG00000185658.14	ENST00000333229.6:ENST00000342449.8:ENST00000446924.5:ENST00000380800.7:ENST00000424441.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.38804	4.739685	5.09133	0.0586308	0.0451818	0.155565	0.154539
chr1	43538477	43538577	106819	0	+	0.51	(0.485,0.523]	chr1	13174	2	SS5_PROX	SS5_PROX:INTRON	PTPRF	ENSG00000142949.17	ENST00000496043.5:ENST00000481019.5:ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.71964	4.739515	4.75939	0.0718646	0.0172254	0.168159	0.0923809
chr2	20003060	20003160	1096460	0	-	0.51	(0.485,0.523]	chr2	119569	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MATN3	ENSG00000132031.13	ENST00000407540.8:ENST00000421259.2	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.71964	4.739515	4.75939	0.0718646	0.0172254	0.168159	0.0923809
chr7	212668	212768	3305781	0	+	0.51	(0.485,0.523]	chr7	320161	33	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.71964	4.739515	4.75939	0.0718646	0.0172254	0.168159	0.0923809
chrX	1448276	1448375	7965976	0	-	0.515152	(0.485,0.523]	chrX	834314	56	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9:ENST00000474865.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.71964	4.739515	4.75939	0.0718646	0.0172254	0.168159	0.0923809
chr16	81643859	81643959	6509736	0	+	0.51	(0.485,0.523]	chr16	645926	218	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.12717	4.73942	5.35167	0.0545434	0.0294163	0.167824	0.116079
chr21	34965152	34965252	7656603	0	-	0.51	(0.485,0.523]	chr21	801067	718	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000482318.5:ENST00000455571.5:ENST00000475045.6:ENST00000416754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.12717	4.73942	5.35167	0.0545434	0.0294163	0.167824	0.116079
chr10	103724661	103724761	4757347	0	-	0.47	(0.45,0.485]	chr10	454796	3	SS3_PROX	SS3_PROX:INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	44	2	4.22352	4.73931	5.2551	0.0496712	0.0373953	0.160725	0.130656
chr14	101825122	101825222	5914049	0	+	0.42	(0.419,0.45]	chr14	578222	2	SS5_PROX	SS5_PROX:INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000554442.5:ENST00000328724.9:ENST00000553890.1:ENST00000350249.7:ENST00000557621.5:ENST00000556946.1:ENST00000556307.5:ENST00000553730.5:ENST00000557714.1:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000556493.1:ENST00000553842.1:ENST00000556373.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	120	2	3.61678	4.73931	5.86184	0.0229694	0.00223565	0.102982	0.024843
chr9	137689026	137689125	4265177	0	+	0.515152	(0.485,0.523]	chr9	407335	33	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000630754.2:ENST00000460843.6:ENST00000626216.2:ENST00000629335.2:ENST00000637335.1:ENST00000636376.1:ENST00000637655.1:ENST00000636027.1:ENST00000492232.5:ENST00000460486.3:ENST00000636081.1:ENST00000637161.1:ENST00000629417.1:ENST00000637662.1:ENST00000636186.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	90	2	4.00429	4.739269999999999	5.47425	0.0243396	0.00233191	0.106588	0.0257012
chr20	44203574	44203670	7564905	0	-	0.375	(0.36,0.39]	chr20	790118	1	INTRON	INTRON	OSER1	ENSG00000132823.11	ENST00000255174.3:ENST00000372970.6	protein_coding	protein_coding	protein_coding	protein_coding	2	127	2	2.98319	4.73923	6.49527	0.0119153	0.00611969	0.0749795	0.0517362
chr3	12964210	12964309	1688771	0	-	0.393939	(0.39,0.419]	chr3	176520	32	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	113	2	3.18264	4.73912	6.2956	0.042233	6.75278e-4	0.13762	0.010811
chr8	38767496	38767596	3802230	0	+	0.45	(0.419,0.45]	chr8	365828	97	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	261	2	4.4722	4.738885	5.00557	0.00553452	2.20651e-4	0.0491917	0.00485236
chr17	15466659	15466759	6860101	0	-	0.47	(0.45,0.485]	chr17	695067	132	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	90	2	3.60494	4.738685	5.87243	0.0143887	0.00682726	0.0821732	0.0525149
chr7	79453752	79453789	3402814	0	+	0.540541	(0.523,0.58]	chr7	328673	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MAGI2-AS3	ENSG00000234456.10	ENST00000616796.4:ENST00000429408.6:ENST00000683943.1:ENST00000426835.6:ENST00000446159.6:ENST00000663669.1:ENST00000661940.1:ENST00000616192.5:ENST00000657546.1:ENST00000655337.2:ENST00000668746.1:ENST00000629211.2:ENST00000613892.4:ENST00000612949.5:ENST00000619135.4:ENST00000655795.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	112	2	3.7036	4.7382349999999995	5.77287	0.0156851	0.00160162	0.0852152	0.0197827
chr15	90663728	90663828	6349606	0	-	0.43	(0.419,0.45]	chr15	626292	221	INTRON	INTRON	CRTC3-AS1	ENSG00000259736.1	ENST00000559531.1	lncRNA	lncRNA	lncRNA	lncRNA	0	41	2	4.62273	4.7381899999999995	4.85365	0.103601	0.0197641	0.197541	0.100774
chr2	235521125	235521225	1062807	0	+	0.42	(0.419,0.45]	chr2	115651	259	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.62273	4.7381899999999995	4.85365	0.103601	0.0197641	0.197541	0.100774
chr6	16509355	16509455	3101930	0	-	0.45	(0.419,0.45]	chr6	300855	229	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.62273	4.7381899999999995	4.85365	0.103601	0.0197641	0.197541	0.100774
chr2	240521304	240521394	1394648	0	-	0.611111	(0.58,1]	chr2	149020	4	INTRON	INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000405523.7	protein_coding	protein_coding	protein_coding	protein_coding	2	118	2	3.95805	4.73809	5.51813	0.013519	5.0401e-4	0.0792526	0.00880724
chr22	40242115	40242215	7728141	0	+	0.45	(0.419,0.45]	chr22	809605	636	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000402203.5:ENST00000454349.7:ENST00000489500.1:ENST00000335727.13	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.69033	4.73804	4.78575	0.0958674	0.0224633	0.189038	0.108193
chr5	60444240	60444339	2678598	0	-	0.444444	(0.419,0.45]	chr5	264432	717	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000502484.6:ENST00000509355.5:ENST00000506024.5:ENST00000506510.6:ENST00000511382.1:ENST00000505507.6:ENST00000515835.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.69033	4.73804	4.78575	0.0958674	0.0224633	0.189038	0.108193
chr16	8858259	8858345	6546181	0	-	0.686047	(0.58,1]	chr16	651453	3	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CARHSP1	ENSG00000153048.11	ENST00000396593.6:ENST00000611932.4:ENST00000618335.4:ENST00000619881.4:ENST00000610831.4:ENST00000614449.4:ENST00000311052.10:ENST00000561530.5:ENST00000567554.5:ENST00000565287.5:ENST00000567908.5:ENST00000570125.5:ENST00000568117.5:ENST00000568968.1:ENST00000563815.5:ENST00000562843.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	97	2	3.3216	4.73768	6.15376	0.0230709	2.90409e-4	0.102982	0.0059241
chr16	81680422	81680521	6510115	0	+	0.606061	(0.58,1]	chr16	645979	14	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	1	98	2	3.5406	4.73767	5.93474	0.0154024	5.58693e-4	0.0849828	0.00944382
chr2	11579224	11579322	720665	0	+	0.622449	(0.58,1]	chr2	84132	4	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000263834.9:ENST00000389825.7:ENST00000381483.6:ENST00000234142.9	protein_coding	protein_coding	protein_coding	protein_coding	1	97	2	3.35086	4.73765	6.12444	0.0218816	3.17437e-4	0.101015	0.00632787
chr5	883350	883450	2608210	0	-	0.52	(0.485,0.523]	chr5	259477	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	119	2	3.45324	4.73752	6.0218	0.00985907	0.00312715	0.0670775	0.0311915
chr7	158910850	158910949	3523094	0	+	0.646465	(0.58,1]	chr7	340275	44	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	128	2	4.45151	4.737325	5.02314	0.00638322	0.00241527	0.0501889	0.0309229
chr11	70817064	70817164	5062454	0	-	0.58	(0.523,0.58]	chr11	492713	95	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	90	2	3.4003	4.73715	6.074	0.0103016	0.00906277	0.0678983	0.0637469
chr15	60538923	60539023	6284908	0	-	0.34	(0.33,0.36]	chr15	619503	67	INTRON	INTRON	RORA	ENSG00000069667.16	ENST00000335670.11:ENST00000261523.9:ENST00000309157.8:ENST00000449337.6:ENST00000551975.5:ENST00000560004.5:ENST00000559343.1:ENST00000558234.1:ENST00000557822.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.57958	4.7371300000000005	4.89468	0.0629186	0.0288057	0.160778	0.123764
chr19	58325861	58325953	7412923	0	-	0.380435	(0.36,0.39]	chr19	772005	1	INTRON	INTRON	ENSG00000283103	ENSG00000283103.4	ENST00000664481.1:ENST00000634676.2:ENST00000659246.1:ENST00000671228.1:ENST00000658331.1:ENST00000669883.1:ENST00000651375.3:ENST00000669440.2:ENST00000666049.1:ENST00000687313.1	lncRNA	lncRNA	lncRNA	lncRNA	0	41	2	4.64834	4.73703	4.82572	0.0751666	0.0272056	0.172839	0.119337
chr4	67478575	67478675	2243867	0	-	0.38	(0.36,0.39]	chr4	226043	32	INTRON	INTRON	CENPC	ENSG00000145241.11	ENST00000273853.11:ENST00000513216.5:ENST00000506882.5:ENST00000515140.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.64834	4.73703	4.82572	0.0751666	0.0272056	0.172839	0.119337
chr6	53862207	53862307	2928254	0	+	0.37	(0.36,0.39]	chr6	288346	196	INTRON	INTRON	LRRC1	ENSG00000137269.15	ENST00000487251.5:ENST00000370888.6:ENST00000370882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.64834	4.73703	4.82572	0.0751666	0.0272056	0.172839	0.119337
chr9	114072624	114072724	4373751	0	-	0.44	(0.419,0.45]	chr9	418038	3	SS5_PROX	SS5_PROX:INTRON	AMBP	ENSG00000106927.12	ENST00000265132.8:ENST00000540645.5:ENST00000466610.6:ENST00000603230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	94	2	3.59354	4.7369900000000005	5.88044	0.0192645	0.00820853	0.0954446	0.0592025
chr13	40627947	40628047	5692945	0	-	0.45	(0.419,0.45]	chr13	558751	648	INTRON	INTRON	FOXO1	ENSG00000150907.10	ENST00000379561.6:ENST00000655267.1:ENST00000660760.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	96	2	3.35398	4.736940000000001	6.1199	0.0139289	0.0132894	0.0824192	0.0787251
chr5	1055681	1055781	2608377	0	-	0.55	(0.523,0.58]	chr5	259538	18	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10:ENST00000634447.1	protein_coding	protein_coding	protein_coding	protein_coding	1	93	2	3.229	4.73671	6.24442	0.0152072	0.00670944	0.0861813	0.0541591
chr19	3530291	3530391	7191601	0	+	0.63	(0.58,1]	chr19	732250	1	SS3_PROX	SS3_PROX:INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	103	2	3.83792	4.736675	5.63543	0.00865536	0.00131165	0.0623824	0.0171898
chr10	79165329	79165429	4533010	0	+	0.6	(0.58,1]	chr10	432438	28	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	134	2	3.15491	4.736555	6.3182	0.0142368	1.74994e-4	0.0817691	0.00410754
chr9	135835068	135835168	4431097	0	-	0.53	(0.523,0.58]	chr9	423507	71	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.50593	4.736535	4.96714	0.094303	0.0108948	0.188571	0.0706366
chr17	72376570	72376669	6962047	0	-	0.444444	(0.419,0.45]	chr17	710285	173	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000648907.1:ENST00000650482.1	lncRNA	lncRNA	lncRNA	lncRNA	1	116	2	3.39699	4.73647	6.07595	0.0322355	0.00132452	0.121593	0.0173138
chr9	130771154	130771254	4254801	0	+	0.41	(0.39,0.419]	chr9	405261	563	INTRON	INTRON	ABL1	ENSG00000097007.19	ENST00000372348.7:ENST00000393293.4	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.64779	4.73609	4.82439	0.0762206	0.0273358	0.174484	0.119337
chr19	15641713	15641813	7215370	0	+	0.55	(0.523,0.58]	chr19	737132	1	SS5_PROX	SS5_PROX:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	98	2	3.03457	4.73606	6.43755	0.0231444	0.00473049	0.109883	0.0449253
chr17	17820778	17820864	6865728	0	-	0.616279	(0.58,1]	chr17	695913	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000395751.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	104	2	3.87867	4.735955	5.59324	0.00797934	0.0014734	0.0596361	0.0185589
chr7	138508404	138508504	3502485	0	+	0.31	(0.29,0.33]	chr7	337502	36	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	92	2	4.11338	4.735925	5.35847	0.0269557	0.00180446	0.112113	0.0215053
chr10	79173818	79173918	4533095	0	+	0.54	(0.523,0.58]	chr10	432438	113	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.68785	4.735844999999999	4.78384	0.0663135	0.0194172	0.162385	0.0994526
chr17	38743996	38744094	6895615	0	-	0.571429	(0.523,0.58]	chr17	700401	32	INTRON	INTRON	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000611883.4:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.68785	4.735844999999999	4.78384	0.0663135	0.0194172	0.162385	0.0994526
chr22	38180024	38180124	7809760	0	-	0.53	(0.523,0.58]	chr22	818776	3	SS5_PROX	SS5_PROX:INTRON	PLA2G6	ENSG00000184381.20	ENST00000332509.8:ENST00000663895.1:ENST00000335539.7:ENST00000402064.5:ENST00000668499.1:ENST00000664587.1:ENST00000655142.1:ENST00000660610.1:ENST00000665987.1:ENST00000667521.1:ENST00000673413.1:ENST00000668949.1:ENST00000436218.6:ENST00000668208.1:ENST00000471636.5:ENST00000430886.5:ENST00000447598.6:ENST00000435484.5:ENST00000417303.6:ENST00000455341.2:ENST00000420435.5:ENST00000426674.1:ENST00000594306.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.68785	4.735844999999999	4.78384	0.0663135	0.0194172	0.162385	0.0994526
chr9	100124185	100124285	4198200	0	+	0.34	(0.33,0.36]	chr9	398909	192	INTRON	INTRON	INVS	ENSG00000119509.13	ENST00000262457.7:ENST00000496467.5:ENST00000262456.6:ENST00000374921.3:ENST00000466647.5:ENST00000460636.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.31234	4.735825	5.15931	0.0458858	0.043896	0.154743	0.139792
chr1	42237852	42237952	455561	0	-	0.32	(0.29,0.33]	chr1	54738	95	INTRON	INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6:ENST00000445886.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.51301	4.73566	4.95831	0.0885563	0.0118616	0.183874	0.0746945
chr3	149836634	149836734	1595542	0	+	0.31	(0.29,0.33]	chr3	168720	137	INTRON	INTRON	RNF13	ENSG00000082996.20	ENST00000344229.7:ENST00000470151.5:ENST00000466478.5:ENST00000491086.5:ENST00000392894.8:ENST00000467977.5:ENST00000474348.5:ENST00000467996.1:ENST00000468648.5:ENST00000459632.5:ENST00000466795.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.51301	4.73566	4.95831	0.0885563	0.0118616	0.183874	0.0746945
chr17	57526277	57526376	6762477	0	+	0.515152	(0.485,0.523]	chr17	682146	15	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1:ENST00000674898.1:ENST00000676345.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	125	2	2.81013	4.7355	6.66087	0.0154038	0.00309962	0.0869771	0.0355173
chr13	113529671	113529771	5658576	0	+	0.5	(0.485,0.523]	chr13	555716	86	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.50634	4.734975	4.96361	0.0939553	0.0112713	0.188571	0.071709
chr16	50593000	50593100	6451857	0	+	0.52	(0.485,0.523]	chr16	639902	344	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.50634	4.734975	4.96361	0.0939553	0.0112713	0.188571	0.071709
chr22	35659596	35659694	7719711	0	+	0.489796	(0.485,0.523]	chr22	808125	1	UTR3	UTR3:EXON_MRNA	APOL6	ENSG00000221963.6	ENST00000409652.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.50634	4.734975	4.96361	0.0939553	0.0112713	0.188571	0.071709
chr5	76549245	76549345	2458593	0	+	0.52	(0.485,0.523]	chr5	245486	14	INTRON	INTRON	IQGAP2	ENSG00000145703.17	ENST00000274364.11:ENST00000514350.5:ENST00000379730.7	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.50634	4.734975	4.96361	0.0939553	0.0112713	0.188571	0.071709
chr17	15463765	15463865	6860072	0	-	0.6	(0.58,1]	chr17	695067	103	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	99	2	3.02751	4.734865	6.44222	0.0385189	1.18459e-4	0.131324	0.00311099
chr1	1035922	1036021	1077	0	+	0.616162	(0.58,1]	chr1	176	2	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000469403.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.58025	4.73485	4.88945	0.0388928	0.0172566	0.131324	0.0923809
chr13	113029136	113029234	5655920	0	+	0.632653	(0.58,1]	chr13	555157	22	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486806.1:ENST00000473345.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.58025	4.73485	4.88945	0.0388928	0.0172566	0.131324	0.0923809
chr16	85370444	85370544	6516775	0	+	0.63	(0.58,1]	chr16	646391	111	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.58025	4.73485	4.88945	0.0388928	0.0172566	0.131324	0.0923809
chr17	81149191	81149291	6982994	0	-	0.69	(0.58,1]	chr17	713268	143	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.58025	4.73485	4.88945	0.0388928	0.0172566	0.131324	0.0923809
chr2	239284574	239284674	1391554	0	-	0.6	(0.58,1]	chr2	148740	330	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.58025	4.73485	4.88945	0.0388928	0.0172566	0.131324	0.0923809
chr22	48794099	48794199	7752211	0	+	0.66	(0.58,1]	chr22	812294	423	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000336769.9	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.58025	4.73485	4.88945	0.0388928	0.0172566	0.131324	0.0923809
chr3	197518451	197518551	1991572	0	-	0.64	(0.58,1]	chr3	202753	27	INTRON	INTRON	BDH1	ENSG00000161267.12	ENST00000358186.6:ENST00000392378.6:ENST00000392379.6:ENST00000651856.1:ENST00000441275.5:ENST00000479425.5:ENST00000446746.5:ENST00000477015.5:ENST00000434143.5:ENST00000432819.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.58025	4.73485	4.88945	0.0388928	0.0172566	0.131324	0.0923809
chr9	133913166	133913266	4429532	0	-	0.6	(0.58,1]	chr9	423310	514	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.58025	4.73485	4.88945	0.0388928	0.0172566	0.131324	0.0923809
chr9	137781890	137781990	4266128	0	+	0.68	(0.58,1]	chr9	407439	2	SS3_PROX	SS3_PROX:INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.58025	4.73485	4.88945	0.0388928	0.0172566	0.131324	0.0923809
chr11	33308609	33308709	4838001	0	+	0.43	(0.419,0.45]	chr11	462597	207	INTRON	INTRON	HIPK3	ENSG00000110422.12	ENST00000525975.5:ENST00000303296.9:ENST00000379016.7:ENST00000456517.2	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.7145	4.7347	4.7549	0.0888907	0.0256236	0.183874	0.115966
chr16	14876090	14876174	6402507	0	+	0.428571	(0.419,0.45]	chr16	632482	3	SS3_PROX	SS3_PROX:INTRON	NOMO1	ENSG00000103512.16	ENST00000287667.12	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.7145	4.7347	4.7549	0.0888907	0.0256236	0.183874	0.115966
chr18	56754183	56754283	7067700	0	+	0.45	(0.419,0.45]	chr18	720926	222	INTRON	INTRON	WDR7	ENSG00000091157.15	ENST00000589935.1:ENST00000254442.8:ENST00000357574.7:ENST00000587403.5:ENST00000590557.5:ENST00000585824.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.7145	4.7347	4.7549	0.0888907	0.0256236	0.183874	0.115966
chr17	315237	315337	6821428	0	-	0.62	(0.58,1]	chr17	689582	87	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	101	2	3.75278	4.73453	5.71628	0.01024	0.00104668	0.0684871	0.0146403
chr13	97363335	97363435	5632224	0	+	0.48	(0.45,0.485]	chr13	553214	53	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000449284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	396	2	3.59648	4.734355	5.87223	0.0065488	1.0677e-5	0.05361	5.39197e-4
chr1	21656876	21656975	420041	0	-	0.515152	(0.485,0.523]	chr1	49035	37	INTRON	INTRON	RAP1GAP	ENSG00000076864.21	ENST00000374765.9:ENST00000542643.6:ENST00000611549.4:ENST00000317967.11:ENST00000482984.5:ENST00000464457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	40	2	4.68434	4.734299999999999	4.78426	0.0660335	0.0200045	0.162385	0.100864
chr17	527088	527188	6822414	0	-	0.52	(0.485,0.523]	chr17	689687	7	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681050.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000681600.1:ENST00000576149.5:ENST00000681917.1:ENST00000681103.1:ENST00000681858.1:ENST00000570771.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.68434	4.734299999999999	4.78426	0.0660335	0.0200045	0.162385	0.100864
chr17	957704	957804	6826412	0	-	0.5	(0.485,0.523]	chr17	690074	244	INTRON	INTRON	NXN	ENSG00000167693.17	ENST00000336868.8:ENST00000575171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.68434	4.734299999999999	4.78426	0.0660335	0.0200045	0.162385	0.100864
chr4	88607048	88607148	2082528	0	+	0.49	(0.485,0.523]	chr4	212513	6	INTRON	INTRON	HERC3	ENSG00000138641.18	ENST00000431413.5:ENST00000402738.6:ENST00000422770.5:ENST00000407637.5:ENST00000426683.5:ENST00000452979.5:ENST00000264345.7	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.68434	4.734299999999999	4.78426	0.0660335	0.0200045	0.162385	0.100864
chr9	134044596	134044694	4430484	0	-	0.5	(0.485,0.523]	chr9	423369	23	INTRON	INTRON	BRD3	ENSG00000169925.17	ENST00000303407.12:ENST00000371834.6	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.68434	4.734299999999999	4.78426	0.0660335	0.0200045	0.162385	0.100864
chr18	13444459	13444557	7025020	0	+	0.367347	(0.36,0.39]	chr18	717583	2	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000610087.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	101	2	3.05132	4.73421	6.4171	0.0252548	0.00699528	0.114966	0.0555241
chr17	82315874	82315962	6988961	0	-	0.659091	(0.58,1]	chr17	714793	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CD7	ENSG00000173762.8	ENST00000584284.5:ENST00000312648.8:ENST00000583376.1	protein_coding	protein_coding	protein_coding	protein_coding	1	97	2	3.23007	4.734195	6.23832	0.0271644	2.24165e-4	0.112113	0.00490779
chr7	98317856	98317950	3648376	0	-	0.62766	(0.58,1]	chr7	351235	1	INTRON	INTRON	BAIAP2L1	ENSG00000006453.14	ENST00000005260.9:ENST00000462558.5:ENST00000473569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	88	2	3.20215	4.734065	6.26598	0.0136092	0.00318361	0.0811697	0.0360488
chr7	55553610	55553710	3592450	0	-	0.56	(0.523,0.58]	chr7	346472	4	SS5_PROX	SS5_PROX:INTRON	VOPP1	ENSG00000154978.13	ENST00000462326.5:ENST00000285279.10:ENST00000428648.5:ENST00000454227.5:ENST00000427700.1:ENST00000452832.5:ENST00000453112.5:ENST00000471168.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	107	2	3.40026	4.733865	6.06747	0.0262178	7.30845e-4	0.110264	0.0113963
chr20	48932903	48933003	7490264	0	+	0.54	(0.523,0.58]	chr20	780774	105	INTRON	INTRON	ARFGEF2	ENSG00000124198.10	ENST00000371917.5:ENST00000681399.1:ENST00000679436.1:ENST00000681885.1:ENST00000681021.1:ENST00000680871.1:ENST00000681656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	142	2	3.17807	4.73385	6.28963	0.00618741	0.00354058	0.0519442	0.0342231
chr7	47363881	47363981	3587430	0	-	0.52	(0.485,0.523]	chr7	346030	172	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	118	2	3.29336	4.73381	6.17426	0.00754939	0.00474748	0.0578091	0.0413976
chrX	52975357	52975456	8043667	0	-	0.515152	(0.485,0.523]	chrX	839375	90	INTRON	INTRON	FAM156A	ENSG00000268350.8	ENST00000611661.4:ENST00000622732.5:ENST00000622323.5:ENST00000612083.5:ENST00000610625.5:ENST00000612915.4:ENST00000615092.4:ENST00000623782.3:ENST00000616592.1:ENST00000619897.4:ENST00000615171.1:ENST00000622430.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	100	2	2.97038	4.733695	6.49701	0.0267011	0.00420849	0.118343	0.0421454
chr2	3292806	3292906	1081035	0	-	0.28	[0,0.29]	chr2	117633	101	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.68855	4.733635	4.77872	0.0554735	0.0145383	0.154188	0.0836469
chr2	65395378	65395478	1171809	0	-	0.57	(0.523,0.58]	chr2	127582	148	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	3	144	2	2.75524	4.7332	6.71116	0.0104905	0.00284169	0.0688973	0.033773
chr11	96254094	96254194	5112677	0	-	0.35	(0.33,0.36]	chr11	496566	1602	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.40703	4.733115	5.0592	0.0504445	0.0390931	0.148216	0.142605
chr14	70024346	70024446	5872626	0	+	0.36	(0.33,0.36]	chr14	573363	5	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.40703	4.733115	5.0592	0.0504445	0.0390931	0.148216	0.142605
chr16	73037971	73038071	6627789	0	-	0.36	(0.33,0.36]	chr16	663549	320	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2:ENST00000397992.5:ENST00000268489.10	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	3.75183	4.73311	5.71439	0.0191308	0.00511828	0.0952349	0.0434952
chr10	75727047	75727147	4523434	0	+	0.46	(0.45,0.485]	chr10	432271	791	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	91	2	3.96198	4.7331	5.50422	0.0257993	0.00281669	0.109555	0.0291091
chr6	36065314	36065413	2904674	0	+	0.454545	(0.45,0.485]	chr6	284907	56	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000622903.4:ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5:ENST00000472333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	109	2	3.35641	4.732515	6.10862	0.0297105	8.0459e-4	0.116341	0.012189
chr16	89295483	89295583	6659760	0	-	0.67	(0.58,1]	chr16	666648	33	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	149	2	3.00261	4.732365	6.46212	0.00295851	0.00211728	0.0301152	0.028892
chr3	188736668	188736768	1657641	0	+	0.32	(0.29,0.33]	chr3	173823	108	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000471917.1:ENST00000415906.1:ENST00000483938.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	120	2	3.51879	4.73236	5.94593	0.0101801	0.00270853	0.068447	0.0284999
chr11	96148609	96148709	5111622	0	-	0.43	(0.419,0.45]	chr11	496566	547	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	1	123	2	3.741	4.732255	5.72351	0.0188635	0.00310292	0.0941462	0.0311614
chr2	63429945	63430045	1161732	0	-	0.43	(0.419,0.45]	chr2	127114	249	INTRON	INTRON	WDPCP	ENSG00000143951.16	ENST00000272321.12:ENST00000409354.6:ENST00000409199.5:ENST00000409120.5:ENST00000398544.7:ENST00000409562.7:ENST00000409835.5:ENST00000417238.5:ENST00000493315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	42	2	4.47684	4.732255	4.98767	0.0669167	0.0389508	0.16272	0.142578
chr22	28590955	28591055	7780940	0	-	0.44	(0.419,0.45]	chr22	815741	1480	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.47684	4.732255	4.98767	0.0669167	0.0389508	0.16272	0.142578
chr22	50420459	50420559	7754446	0	+	0.45	(0.419,0.45]	chr22	812530	6	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9:ENST00000401672.7	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.47684	4.732255	4.98767	0.0669167	0.0389508	0.16272	0.142578
chr9	134042743	134042841	4430465	0	-	0.27551	[0,0.29]	chr9	423369	4	INTRON	INTRON	BRD3	ENSG00000169925.17	ENST00000303407.12:ENST00000371834.6	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.35679	4.73186	5.10693	0.0332741	0.0292928	0.133139	0.116079
chr14	103103440	103103495	5921846	0	+	0.672727	(0.58,1]	chr14	579207	1	SS3_PROX	SS3_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000559116.1:ENST00000560925.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	82	2	3.56821	4.73181	5.89541	0.0066708	0.00550024	0.0540577	0.0454065
chr21	45495939	45496037	7678863	0	-	0.408163	(0.39,0.419]	chr21	802845	25	UTR3	UTR3:EXON_MRNA	SLC19A1	ENSG00000173638.19	ENST00000417954.5	protein_coding	protein_coding	protein_coding	protein_coding	0	46	2	4.09132	4.73152	5.37172	0.0689553	0.0367885	0.193274	0.129052
chr2	149613532	149613632	920081	0	+	0.29	[0,0.29]	chr2	102788	191	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	1	88	2	4.11698	4.73123	5.34548	0.0197148	0.0015272	0.0958249	0.0191213
chr17	77412919	77413019	6804500	0	+	0.32	(0.29,0.33]	chr17	686779	74	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	89	2	3.48839	4.731215	5.97404	0.0096909	0.00869049	0.0661757	0.0612699
chr15	85110023	85110121	6175892	0	+	0.459184	(0.45,0.485]	chr15	607455	5	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000560789.5:ENST00000557819.6:ENST00000558543.5:ENST00000557954.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.50852	4.73116	4.9538	0.0569772	0.0302873	0.154343	0.126768
chr18	49978662	49978760	7164413	0	-	0.479592	(0.45,0.485]	chr18	728322	37	INTRON	INTRON	MYO5B	ENSG00000167306.20	ENST00000285039.12	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.50852	4.73116	4.9538	0.0569772	0.0302873	0.154343	0.126768
chr6	166333691	166333790	3301410	0	-	0.50505	(0.485,0.523]	chr6	319660	19	INTRON	INTRON	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000478705.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	144	2	2.76707	4.730975	6.69488	0.0103354	0.00290687	0.0681131	0.0342042
chr1	822110	822210	379731	0	-	0.54	(0.523,0.58]	chr1	42663	436	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000634337.2:ENST00000635509.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	42	2	4.34118	4.73084	5.1205	0.0416463	0.0372357	0.139793	0.136301
chr1	9105217	9105301	396323	0	-	0.571429	(0.523,0.58]	chr1	45205	2	SS5_PROX	SS5_PROX:INTRON	GPR157	ENSG00000180758.12	ENST00000377411.5:ENST00000465853.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.34118	4.73084	5.1205	0.0416463	0.0372357	0.139793	0.136301
chr12	132565392	132565491	5353272	0	+	0.535354	(0.523,0.58]	chr12	523680	48	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1:ENST00000539264.5:ENST00000543360.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.34118	4.73084	5.1205	0.0416463	0.0372357	0.139793	0.136301
chr16	85230565	85230665	6515374	0	+	0.54	(0.523,0.58]	chr16	646377	28	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	42	2	4.34118	4.73084	5.1205	0.0416463	0.0372357	0.139793	0.136301
chr2	235970822	235970922	1067324	0	+	0.53	(0.523,0.58]	chr2	115748	18	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5:ENST00000418654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.34118	4.73084	5.1205	0.0416463	0.0372357	0.139793	0.136301
chr5	150510420	150510520	2565115	0	+	0.54	(0.523,0.58]	chr5	254953	18	INTRON	INTRON	NDST1	ENSG00000070614.15	ENST00000522491.1:ENST00000519157.1:ENST00000524161.1:ENST00000523767.5:ENST00000518299.1:ENST00000518346.1:ENST00000261797.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.34118	4.73084	5.1205	0.0416463	0.0372357	0.139793	0.136301
chr9	7040274	7040374	4117798	0	+	0.54	(0.523,0.58]	chr9	391962	240	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000381306.7:ENST00000381309.8:ENST00000543771.5:ENST00000428870.6:ENST00000420847.2	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.34118	4.73084	5.1205	0.0416463	0.0372357	0.139793	0.136301
chr17	343519	343618	6821724	0	-	0.484848	(0.45,0.485]	chr17	689629	22	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000577079.5:ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.64346	4.730589999999999	4.81772	0.0850039	0.0167663	0.181766	0.0917029
chr2	239327002	239327102	1391980	0	-	0.47	(0.45,0.485]	chr2	148752	25	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.64346	4.730589999999999	4.81772	0.0850039	0.0167663	0.181766	0.0917029
chr9	136008826	136008925	4432160	0	-	0.464646	(0.45,0.485]	chr9	423617	24	UTR3	UTR3:EXON_MRNA	NACC2	ENSG00000148411.8	ENST00000277554.4:ENST00000371753.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.64346	4.730589999999999	4.81772	0.0850039	0.0167663	0.181766	0.0917029
chr5	59890268	59890368	2673044	0	-	0.33	(0.29,0.33]	chr5	264372	928	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000502484.6:ENST00000405053.7:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	42	2	4.33251	4.730105	5.1277	0.0396433	0.0382902	0.143388	0.131324
chr9	123531687	123531787	4397893	0	-	0.31	(0.29,0.33]	chr9	419652	457	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	88	2	3.66355	4.730035	5.79652	0.0131751	0.00571018	0.0785398	0.0467736
chr6	602417	602517	3078184	0	-	0.49	(0.485,0.523]	chr6	299385	28	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	1	113	2	2.74113	4.730005	6.71888	0.0719691	1.19549e-4	0.168159	0.00313373
chr16	16183130	16183230	6556702	0	-	0.51	(0.485,0.523]	chr16	653131	2	SS3_PROX	SS3_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	515	2	4.24201	4.72992	5.21783	0.00165272	1.60093e-5	0.0251171	7.1852e-4
chr1	86922396	86922496	176222	0	+	0.37	(0.36,0.39]	chr1	19293	62	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	93	2	3.85704	4.72967	5.6023	0.0258522	0.00420937	0.109555	0.0380601
chr11	75493182	75493282	5080243	0	-	0.49	(0.485,0.523]	chr11	494373	3	INTRON	INTRON	GDPD5	ENSG00000158555.15	ENST00000336898.8:ENST00000532435.5:ENST00000529095.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	88	2	3.57804	4.729595	5.88115	0.012541	0.00685872	0.0761905	0.0526888
chr12	94997141	94997207	5475516	0	-	0.5	(0.485,0.523]	chr12	538270	2	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	NDUFA12	ENSG00000184752.14	ENST00000552205.6:ENST00000684171.1:ENST00000547157.1:ENST00000682903.1:ENST00000327772.7:ENST00000684558.1:ENST00000551991.5:ENST00000547986.5:ENST00000546788.1:ENST00000550187.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	88	2	3.57804	4.729595	5.88115	0.012541	0.00685872	0.0761905	0.0526888
chr6	31735162	31735262	3119437	0	-	0.55	(0.523,0.58]	chr6	303332	5	INTRON	INTRON	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000616760.1:ENST00000375784.8	protein_coding	protein_coding	protein_coding	protein_coding	2	120	2	2.98195	4.72956	6.47717	0.010154	0.00439843	0.0677546	0.0429852
chr10	133348191	133348291	4783416	0	-	0.67	(0.58,1]	chr10	457516	20	INTRON	INTRON	ENSG00000226699	ENSG00000226699.1	ENST00000452591.1	lncRNA	lncRNA	lncRNA	lncRNA	0	41	2	4.29454	4.729535	5.16453	0.0305531	0.0249802	0.126768	0.10758
chr12	132546008	132546108	5353076	0	+	0.65	(0.58,1]	chr12	523670	177	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.29454	4.729535	5.16453	0.0305531	0.0249802	0.126768	0.10758
chr22	50240103	50240203	7827262	0	-	0.63	(0.58,1]	chr22	821202	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.29454	4.729535	5.16453	0.0305531	0.0249802	0.126768	0.10758
chr20	58689838	58689938	7498576	0	+	0.41	(0.39,0.419]	chr20	781977	105	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1:ENST00000413559.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	2	262	2	3.96195	4.7295300000000005	5.49711	0.0121905	4.80736e-5	0.0751822	0.00160016
chr4	17625264	17625361	2017129	0	+	0.412371	(0.39,0.419]	chr4	206141	16	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	MED28	ENSG00000118579.13	ENST00000237380.12:ENST00000503945.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	172	2	2.64233	4.72938	6.81643	0.0119845	0.0035848	0.0754036	0.0384108
chr1	149524121	149524209	238838	0	+	0.488636	(0.485,0.523]	chr1	26756	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF19	ENSG00000271383.8	ENST00000651566.2:ENST00000611931.4:ENST00000612881.4:ENST00000369227.7:ENST00000426482.3	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.33772	4.7293199999999995	5.12092	0.0414411	0.03818	0.140822	0.136301
chr10	79217673	79217773	4533538	0	+	0.5	(0.485,0.523]	chr10	432457	10	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.33772	4.7293199999999995	5.12092	0.0414411	0.03818	0.140822	0.136301
chr13	113013563	113013663	5655759	0	+	0.5	(0.485,0.523]	chr13	555138	112	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.33772	4.7293199999999995	5.12092	0.0414411	0.03818	0.140822	0.136301
chr16	29261417	29261517	6433451	0	+	0.5	(0.485,0.523]	chr16	636745	93	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	42	2	4.33772	4.7293199999999995	5.12092	0.0414411	0.03818	0.140822	0.136301
chr9	134337438	134337538	4260797	0	+	0.51	(0.485,0.523]	chr9	406311	104	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.33772	4.7293199999999995	5.12092	0.0414411	0.03818	0.140822	0.136301
chr2	111473286	111473385	1253375	0	-	0.484848	(0.45,0.485]	chr2	134923	8	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1:ENST00000673878.1:ENST00000439494.1	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.5725	4.7290849999999995	4.88567	0.0926859	0.0146126	0.188571	0.0837727
chr8	105871417	105871517	4036424	0	-	0.48	(0.45,0.485]	chr8	385441	726	INTRON	INTRON	ZFPM2-AS1	ENSG00000251003.9	ENST00000520433.5:ENST00000524045.6:ENST00000520594.5:ENST00000518932.5:ENST00000659633.1:ENST00000509144.2:ENST00000520078.5:ENST00000521622.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	40	2	4.5725	4.7290849999999995	4.88567	0.0926859	0.0146126	0.188571	0.0837727
chr18	21577961	21578060	7128468	0	-	0.373737	(0.36,0.39]	chr18	725442	18	INTRON	INTRON	ESCO1	ENSG00000141446.11	ENST00000269214.10:ENST00000383276.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	112	2	3.29013	4.728985	6.16784	0.0356209	9.334e-4	0.127588	0.0135546
chr2	25237105	25237205	1104898	0	-	0.52	(0.485,0.523]	chr2	120666	1	SS3_PROX	SS3_PROX:INTRON	DNMT3A	ENSG00000119772.19	ENST00000264709.7:ENST00000321117.10:ENST00000380746.8:ENST00000380756.7:ENST00000683760.1:ENST00000683393.1:ENST00000402667.1:ENST00000474887.6:ENST00000482935.5:ENST00000491288.5:ENST00000466601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	91	2	4.10606	4.728865000000001	5.35167	0.0294163	0.00177809	0.116079	0.0212512
chr12	3235539	3235639	5160132	0	+	0.47	(0.45,0.485]	chr12	501358	198	INTRON	INTRON	TSPAN9	ENSG00000011105.14	ENST00000537971.5:ENST00000444315.6:ENST00000011898.10:ENST00000649909.1:ENST00000640568.1:ENST00000407263.2:ENST00000431374.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	45	2	4.11446	4.728735	5.34301	0.0592571	0.0328801	0.176157	0.122593
chr19	47227254	47227334	7392352	0	-	0.75	(0.58,1]	chr19	768098	1	INTRON	INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	1	81	2	3.72143	4.728725	5.73602	0.00904546	0.00366718	0.0637469	0.0346803
chr16	52509512	52509612	6589484	0	-	0.37	(0.36,0.39]	chr16	658702	335	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	154	2	3.32828	4.728695	6.12911	0.0113159	0.00303942	0.0722887	0.0306636
chr1	46609170	46609266	471127	0	-	0.552083	(0.523,0.58]	chr1	56375	16	UTR3	UTR3:EXON_MRNA:INTRON	MKNK1:MOB3C	ENSG00000079277.22:ENSG00000142961.16	ENST00000531769.6:ENST00000319928.9:ENST00000271139.13:ENST00000371940.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.23973	4.7285	5.21727	0.0444247	0.0361597	0.153511	0.127853
chr10	79253022	79253122	4533892	0	+	0.56	(0.523,0.58]	chr10	432461	89	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10:ENST00000472035.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.23973	4.7285	5.21727	0.0444247	0.0361597	0.153511	0.127853
chr5	172373589	172373689	2813045	0	-	0.58	(0.523,0.58]	chr5	275407	4	SS5_PROX	SS5_PROX:INTRON	SH3PXD2B	ENSG00000174705.13	ENST00000636523.1:ENST00000519643.5:ENST00000311601.6	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.23973	4.7285	5.21727	0.0444247	0.0361597	0.153511	0.127853
chr11	70746081	70746181	5061742	0	-	0.59	(0.58,1]	chr11	492701	282	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.3962	4.7284500000000005	5.0607	0.029633	0.0250928	0.116079	0.114418
chr11	70761869	70761969	5061900	0	-	0.59	(0.58,1]	chr11	492701	440	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.3962	4.7284500000000005	5.0607	0.029633	0.0250928	0.116079	0.114418
chr16	977556	977656	6531814	0	-	0.71	(0.58,1]	chr16	648726	67	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000545827.6:ENST00000570014.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.3962	4.7284500000000005	5.0607	0.029633	0.0250928	0.116079	0.114418
chr19	18469980	18470079	7347891	0	-	0.606061	(0.58,1]	chr19	761486	37	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.3962	4.7284500000000005	5.0607	0.029633	0.0250928	0.116079	0.114418
chr2	238352132	238352229	1073450	0	+	0.608247	(0.58,1]	chr2	116386	24	INTRON	INTRON	TRAF3IP1	ENSG00000204104.12	ENST00000391993.7:ENST00000373327.5:ENST00000462122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.3962	4.7284500000000005	5.0607	0.029633	0.0250928	0.116079	0.114418
chr20	34561179	34561279	7547039	0	-	0.66	(0.58,1]	chr20	787853	2	SS3_PROX	SS3_PROX:INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.3962	4.7284500000000005	5.0607	0.029633	0.0250928	0.116079	0.114418
chr20	34567941	34568041	7547107	0	-	0.61	(0.58,1]	chr20	787854	66	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.3962	4.7284500000000005	5.0607	0.029633	0.0250928	0.116079	0.114418
chr11	57552181	57552269	5038981	0	-	0.443182	(0.419,0.45]	chr11	488259	7	UTR3	UTR3:EXON_MRNA	UBE2L6	ENSG00000156587.16	ENST00000340573.8:ENST00000287156.9	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.63955	4.72813	4.81671	0.08258	0.0293406	0.179396	0.125102
chr6	30160129	30160229	3116211	0	-	0.43	(0.419,0.45]	chr6	302316	3	SS5_PROX	SS5_PROX:INTRON	TRIM10	ENSG00000204613.11	ENST00000449742.7:ENST00000376704.3	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.63955	4.72813	4.81671	0.08258	0.0293406	0.179396	0.125102
chr6	36065016	36065115	2904671	0	+	0.444444	(0.419,0.45]	chr6	284907	53	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000622903.4:ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5:ENST00000472333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.63955	4.72813	4.81671	0.08258	0.0293406	0.179396	0.125102
chr20	62959522	62959618	7508292	0	+	0.65625	(0.58,1]	chr20	783180	16	INTRON	INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	99	2	3.66231	4.72757	5.79283	0.0122106	8.4246e-4	0.0752279	0.0125912
chr18	32739631	32739731	7143109	0	-	0.34	(0.33,0.36]	chr18	726504	50	INTRON	INTRON	KLHL14	ENSG00000197705.10	ENST00000359358.9:ENST00000358095.4	protein_coding	protein_coding	protein_coding	protein_coding	1	98	2	4.24785	4.72736	5.20687	0.041040600000000003	0.00145711	0.136289	0.0184991
chr20	381932	382000	7414319	0	+	0.632353	(0.58,1]	chr20	772274	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TRIB3	ENSG00000101255.12	ENST00000615226.4:ENST00000217233.9:ENST00000449710.5:ENST00000422053.3	protein_coding	protein_coding	protein_coding	protein_coding	1	83	2	4.10248	4.72731	5.35214	0.0181452	0.0012583	0.0921579	0.0167083
chr2	44488758	44488858	781744	0	+	0.31	(0.29,0.33]	chr2	89659	316	INTRON	INTRON	CAMKMT	ENSG00000143919.15	ENST00000378494.8:ENST00000402247.5:ENST00000407131.5:ENST00000428993.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	118	2	3.32244	4.727265	6.13209	0.00731667	0.00452552	0.0568523	0.0400651
chr13	113536773	113536872	5658649	0	+	0.545455	(0.523,0.58]	chr13	555722	16	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.60868	4.727185	4.84569	0.0610722	0.0226775	0.158506	0.108193
chr17	77298386	77298485	6803334	0	+	0.565657	(0.523,0.58]	chr17	686716	31	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.60868	4.727185	4.84569	0.0610722	0.0226775	0.158506	0.108193
chr3	129859561	129859659	1914432	0	-	0.540816	(0.523,0.58]	chr3	194458	18	INTRON	INTRON	TMCC1	ENSG00000172765.18	ENST00000393238.8:ENST00000426664.6:ENST00000648771.1:ENST00000505616.5:ENST00000505924.5:ENST00000513411.5:ENST00000512902.5:ENST00000508869.5:ENST00000503256.5:ENST00000515024.5:ENST00000508729.5:ENST00000509440.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	40	2	4.60868	4.727185	4.84569	0.0610722	0.0226775	0.158506	0.108193
chr5	168357443	168357543	2588375	0	+	0.58	(0.523,0.58]	chr5	256651	403	INTRON	INTRON	WWC1	ENSG00000113645.15	ENST00000265293.9:ENST00000521089.5:ENST00000523043.5:ENST00000519859.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.60868	4.727185	4.84569	0.0610722	0.0226775	0.158506	0.108193
chr6	3445712	3445812	3087955	0	-	0.53	(0.523,0.58]	chr6	299812	8	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000485307.5:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.60868	4.727185	4.84569	0.0610722	0.0226775	0.158506	0.108193
chr1	193163090	193163190	309363	0	+	0.37	(0.36,0.39]	chr1	34997	15	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.56926	4.72713	4.885	0.0697729	0.031369	0.167185	0.127822
chr13	32073441	32073541	5561365	0	+	0.39	(0.36,0.39]	chr13	548552	119	INTRON	INTRON	FRY	ENSG00000073910.23	ENST00000645780.1:ENST00000647500.1:ENST00000642040.1:ENST00000542859.6:ENST00000436046.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.56926	4.72713	4.885	0.0697729	0.031369	0.167185	0.127822
chr8	23155775	23155874	3955220	0	-	0.383838	(0.36,0.39]	chr8	377560	4	INTRON	INTRON	TNFRSF10D	ENSG00000173530.6	ENST00000312584.4	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.56926	4.72713	4.885	0.0697729	0.031369	0.167185	0.127822
chr9	123548575	123548675	4398062	0	-	0.39	(0.36,0.39]	chr9	419652	626	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.56926	4.72713	4.885	0.0697729	0.031369	0.167185	0.127822
chr10	50754936	50755034	4488251	0	+	0.428571	(0.419,0.45]	chr10	429413	3	UTR3	UTR3:EXON_MRNA:INTRON	ASAH2B	ENSG00000204147.11	ENST00000374007.5:ENST00000645350.1:ENST00000647317.2:ENST00000643505.1:ENST00000643851.1:ENST00000483649.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	94	2	3.82602	4.727035	5.62805	0.0280406	0.00478241	0.113651	0.0415621
chr4	151260990	151261090	2351893	0	-	0.46	(0.45,0.485]	chr4	235107	331	INTRON	INTRON	SH3D19	ENSG00000109686.19	ENST00000604030.7:ENST00000604440.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	146	2	2.76749	4.726795	6.6861	0.0108929	0.00348661	0.0706366	0.0379065
chr13	113053419	113053515	5656170	0	+	0.65625	(0.58,1]	chr13	555185	8	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	83	2	3.44157	4.726455	6.01134	0.00760198	0.00531709	0.0561937	0.047841
chr17	1561281	1561381	6830762	0	-	0.56	(0.523,0.58]	chr17	690607	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PITPNA	ENSG00000174238.16	ENST00000313486.12:ENST00000575288.5:ENST00000576722.5:ENST00000576761.5:ENST00000576010.6:ENST00000573231.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.43597	4.72637	5.01677	0.0482765	0.0313935	0.144601	0.127822
chr18	49820839	49820939	7060386	0	+	0.58	(0.523,0.58]	chr18	720434	64	INTRON	INTRON	SNHG22	ENSG00000267322.3	ENST00000589499.1	lncRNA	lncRNA	lncRNA	lncRNA	0	41	2	4.43597	4.72637	5.01677	0.0482765	0.0313935	0.144601	0.127822
chr3	64002388	64002486	1495437	0	+	0.418367	(0.39,0.419]	chr3	160390	30	UTR3	UTR3:EXON_MRNA	ATXN7	ENSG00000163635.20	ENST00000674280.1:ENST00000295900.10	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.56871	4.726185	4.88366	0.0707789	0.0315133	0.168159	0.127889
chr18	13713725	13713823	7125317	0	-	0.479592	(0.45,0.485]	chr18	725110	34	INTRON	INTRON	FAM210A	ENSG00000177150.13	ENST00000322247.7:ENST00000651643.1:ENST00000402563.5:ENST00000585785.1:ENST00000588475.1:ENST00000592976.5:ENST00000591269.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	113	2	3.65973	4.72582	5.79191	0.0180534	0.00183113	0.0921579	0.0216571
chr1	246739184	246739281	374096	0	+	0.494845	(0.485,0.523]	chr1	42112	28	INTRON	INTRON	SCCPDH	ENSG00000143653.10	ENST00000366510.4	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.60518	4.725645	4.84611	0.0608067	0.0233371	0.158506	0.110098
chr10	119895344	119895444	4597231	0	+	0.49	(0.485,0.523]	chr10	439450	20	INTRON	INTRON	SEC23IP	ENSG00000107651.14	ENST00000369075.8:ENST00000470478.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.60518	4.725645	4.84611	0.0608067	0.0233371	0.158506	0.110098
chr19	18362890	18362990	7223697	0	+	0.5	(0.485,0.523]	chr19	739110	1	SS3_PROX	SS3_PROX:INTRON	PGPEP1	ENSG00000130517.14	ENST00000269919.11:ENST00000604499.6:ENST00000252813.5:ENST00000596962.5:ENST00000600283.6:ENST00000597431.2:ENST00000597663.2:ENST00000595552.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.60518	4.725645	4.84611	0.0608067	0.0233371	0.158506	0.110098
chr22	25459779	25459877	7701140	0	+	0.5	(0.485,0.523]	chr22	805970	2	SS5_PROX	SS5_PROX:INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000382734.10:ENST00000686640.1:ENST00000509460.3:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	40	2	4.60518	4.725645	4.84611	0.0608067	0.0233371	0.158506	0.110098
chr7	29988544	29988643	3564845	0	-	0.494949	(0.485,0.523]	chr7	344002	188	INTRON	INTRON	SCRN1	ENSG00000136193.17	ENST00000426154.5:ENST00000242059.10:ENST00000425819.6:ENST00000434476.6:ENST00000421434.5:ENST00000494620.1:ENST00000409570.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.60518	4.725645	4.84611	0.0608067	0.0233371	0.158506	0.110098
chr11	70748579	70748679	5061767	0	-	0.33	(0.29,0.33]	chr11	492701	307	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.42727	4.72561	5.02395	0.0445554	0.0335282	0.140478	0.133139
chr17	75976454	75976553	6973999	0	-	0.313131	(0.29,0.33]	chr17	711682	23	INTRON	INTRON	ACOX1	ENSG00000161533.12	ENST00000293217.10:ENST00000572047.5:ENST00000573078.5:ENST00000301608.8:ENST00000591857.5:ENST00000588176.5:ENST00000589301.1:ENST00000576743.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.42727	4.72561	5.02395	0.0445554	0.0335282	0.140478	0.133139
chr11	18011611	18011709	5015375	0	-	0.387755	(0.36,0.39]	chr11	484704	11	INTRON	INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528200.5:ENST00000532265.5:ENST00000529728.5:ENST00000530613.5:ENST00000532389.5:ENST00000530925.5:ENST00000533328.5:ENST00000532212.5:ENST00000524716.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	258	2	4.71657	4.72558	4.73459	0.00315404	4.2669e-4	0.0359193	0.00779962
chr1	149528860	149528953	238897	0	+	0.516129	(0.485,0.523]	chr1	26790	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF19	ENSG00000271383.8	ENST00000651566.2:ENST00000611931.4:ENST00000612881.4:ENST00000369227.7	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.43249	4.72484	5.01719	0.0480495	0.0322299	0.144601	0.12988
chr1	169471479	169471578	614694	0	-	0.494949	(0.485,0.523]	chr1	72751	9	INTRON	INTRON	SLC19A2	ENSG00000117479.15	ENST00000236137.10:ENST00000367804.4:ENST00000646596.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.43249	4.72484	5.01719	0.0480495	0.0322299	0.144601	0.12988
chr8	505786	505886	3931462	0	-	0.49	(0.485,0.523]	chr8	375980	108	INTRON	INTRON	TDRP	ENSG00000180190.13	ENST00000523656.5:ENST00000324079.11	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.43249	4.72484	5.01719	0.0480495	0.0322299	0.144601	0.12988
chr8	23063967	23064067	3954957	0	-	0.53	(0.523,0.58]	chr8	377513	142	INTRON	INTRON	TNFRSF10B	ENSG00000120889.13	ENST00000276431.9:ENST00000347739.3:ENST00000523504.5:ENST00000519028.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	119	2	3.01186	4.724705	6.43755	0.00944557	0.00473049	0.0650078	0.0449253
chr4	709061	709160	1993718	0	+	0.555556	(0.523,0.58]	chr4	203088	27	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	147	2	3.06366	4.724375	6.38509	0.0227901	3.00426e-4	0.102982	0.00607383
chr19	15331035	15331135	7342361	0	-	0.52	(0.485,0.523]	chr19	760397	507	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	141	2	2.9904	4.724165	6.45793	0.00590204	0.00452302	0.0477399	0.0436138
chr14	94308073	94308170	6046253	0	-	0.536082	(0.523,0.58]	chr14	593049	15	INTRON	INTRON	SERPINA6	ENSG00000170099.6	ENST00000341584.4:ENST00000555056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	244	2	4.59411	4.723825	4.85354	0.00181824	4.40994e-4	0.0265421	0.00800597
chr13	98402229	98402328	5636288	0	+	0.515152	(0.485,0.523]	chr13	553598	59	UTR3	UTR3:EXON_MRNA:INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2	protein_coding	protein_coding	protein_coding	protein_coding	2	166	2	3.57322	4.723765	5.87431	0.00912974	0.00127835	0.0641926	0.0168904
chr22	48697662	48697762	7751244	0	+	0.35	(0.33,0.36]	chr22	812283	39	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.49588	4.723755	4.95163	0.0583482	0.033477	0.155373	0.133139
chr16	46902181	46902280	6442605	0	+	0.545455	(0.523,0.58]	chr16	639007	10	INTRON	INTRON	GPT2	ENSG00000166123.14	ENST00000340124.9:ENST00000562132.5:ENST00000440783.2	protein_coding	protein_coding	protein_coding	protein_coding	3	142	2	3.24957	4.723655	6.19774	0.0072907	0.00291932	0.0567247	0.029882
chr2	235528438	235528538	1062882	0	+	0.43	(0.419,0.45]	chr2	115656	35	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	46	2	4.08324	4.7235949999999995	5.36395	0.0727147	0.0407485	0.199502	0.135868
chr12	7137610	7137691	5167704	0	+	0.45679	(0.45,0.485]	chr12	502870	1	SS3_PROX	SS3_PROX:INTRON	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000537408.1:ENST00000535668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	40	2	4.67139	4.7235499999999995	4.77571	0.0719884	0.0223378	0.168159	0.108193
chr16	81686694	81686793	6510178	0	+	0.474747	(0.45,0.485]	chr16	645979	77	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.67139	4.7235499999999995	4.77571	0.0719884	0.0223378	0.168159	0.108193
chr2	179141097	179141197	1327161	0	-	0.46	(0.45,0.485]	chr2	141652	83	INTRON	INTRON	SESTD1	ENSG00000187231.14	ENST00000428443.8:ENST00000335289.5:ENST00000426988.1:ENST00000489901.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.67139	4.7235499999999995	4.77571	0.0719884	0.0223378	0.168159	0.108193
chr3	136172517	136172617	1920894	0	-	0.46	(0.45,0.485]	chr3	195416	194	INTRON	INTRON	MSL2	ENSG00000174579.4	ENST00000309993.3:ENST00000434835.2:ENST00000481989.1:ENST00000491050.1:ENST00000473093.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.67139	4.7235499999999995	4.77571	0.0719884	0.0223378	0.168159	0.108193
chr8	124660215	124660315	4064259	0	-	0.48	(0.45,0.485]	chr8	387128	409	INTRON	INTRON	MTSS1	ENSG00000170873.19	ENST00000518547.6:ENST00000378017.7:ENST00000325064.9:ENST00000522162.1:ENST00000529463.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.67139	4.7235499999999995	4.77571	0.0719884	0.0223378	0.168159	0.108193
chr3	65538762	65538862	1810853	0	-	0.34	(0.33,0.36]	chr3	187255	60	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5:ENST00000476403.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	102	2	4.38776	4.72348	5.0592	0.0504445	0.00100301	0.148216	0.0142502
chr7	30056730	30056829	3337862	0	+	0.282828	[0,0.29]	chr7	323044	10	INTRON	INTRON	PLEKHA8	ENSG00000106086.20	ENST00000622102.4:ENST00000258679.11:ENST00000649443.1:ENST00000449726.6:ENST00000396257.6:ENST00000396259.5:ENST00000440706.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.14609	4.7234549999999995	5.30082	0.0482299	0.0212677	0.159496	0.0996805
chr10	79109524	79109624	4532450	0	+	0.63	(0.58,1]	chr10	432420	399	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.18518	4.72328	5.26138	0.0374658	0.021217	0.139793	0.0996078
chr12	132511104	132511199	5352724	0	+	0.705263	(0.58,1]	chr12	523657	8	UTR3	UTR3:EXON_MRNA:INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1:ENST00000542061.2	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.18518	4.72328	5.26138	0.0374658	0.021217	0.139793	0.0996078
chr17	4853018	4853118	6672083	0	+	0.63	(0.58,1]	chr17	668609	190	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.18518	4.72328	5.26138	0.0374658	0.021217	0.139793	0.0996078
chr22	48752231	48752331	7751792	0	+	0.67	(0.58,1]	chr22	812294	4	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000336769.9	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.18518	4.72328	5.26138	0.0374658	0.021217	0.139793	0.0996078
chr7	2640346	2640445	3309073	0	+	0.666667	(0.58,1]	chr7	320721	77	INTRON	INTRON	TTYH3	ENSG00000136295.15	ENST00000258796.12:ENST00000407643.5	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.18518	4.72328	5.26138	0.0374658	0.021217	0.139793	0.0996078
chr10	35371851	35371951	4476027	0	+	0.41	(0.39,0.419]	chr10	428107	343	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	92	2	3.55811	4.723185	5.88826	0.0169925	0.00853617	0.0889149	0.0610387
chr19	8462919	8462996	7201160	0	+	0.350649	(0.33,0.36]	chr19	734342	4	SS5_PROX	SS5_PROX:INTRON	HNRNPM	ENSG00000099783.12	ENST00000348943.7:ENST00000597813.5:ENST00000600092.5:ENST00000325495.9:ENST00000600806.5:ENST00000620401.4:ENST00000594907.5:ENST00000596984.5:ENST00000601645.5:ENST00000593293.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.64131	4.72314	4.80497	0.0867669	0.0188359	0.182221	0.0980631
chr11	108492066	108492166	5120048	0	-	0.39	(0.36,0.39]	chr11	497222	5	INTRON	INTRON	POGLUT3	ENSG00000178202.13	ENST00000323468.10	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.39677	4.723129999999999	5.04949	0.0563927	0.0422707	0.154188	0.149195
chr6	26941318	26941418	3112955	0	-	0.38	(0.36,0.39]	chr6	301909	157	INTRON	INTRON	GUSBP2	ENSG00000241549.8	ENST00000479900.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	42	2	4.39677	4.723129999999999	5.04949	0.0563927	0.0422707	0.154188	0.149195
chr16	85234465	85234565	6515413	0	+	0.6	(0.58,1]	chr16	646377	67	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	112	2	4.13566	4.72301	5.31036	0.00472191	0.00312721	0.0449204	0.0311915
chr22	20937337	20937437	7688964	0	+	0.53	(0.523,0.58]	chr22	804526	27	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	88	2	3.47888	4.72281	5.96674	0.0109075	0.00856566	0.0707085	0.0612
chr6	169698357	169698457	3304878	0	-	0.56	(0.523,0.58]	chr6	319967	29	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1:ENST00000474018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	230	2	4.4262	4.72267	5.01914	0.00418313	1.23884e-4	0.0419889	0.00321822
chr10	18556468	18556568	4642293	0	-	0.39	(0.36,0.39]	chr10	443321	41	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.20082	4.721995	5.24317	0.0581116	0.0433841	0.175217	0.138813
chr9	14807639	14807739	4279784	0	-	0.42	(0.419,0.45]	chr9	408932	3	SS5_PROX	SS5_PROX:INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	366	2	4.17988	4.721965	5.26405	0.00132941	6.1411e-4	0.0222813	0.0101036
chr20	382083	382166	7414321	0	+	0.638554	(0.58,1]	chr20	772275	2	SS3_PROX	SS3_PROX:INTRON	TRIB3	ENSG00000101255.12	ENST00000615226.4:ENST00000217233.9:ENST00000449710.5:ENST00000422053.3	protein_coding	protein_coding	protein_coding	protein_coding	5	435	2	4.59011	4.721925000000001	4.85374	6.46954e-4	1.10564e-5	0.0149571	5.52474e-4
chr16	85374942	85375042	6516820	0	+	0.62	(0.58,1]	chr16	646391	156	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	105	2	3.93773	4.72135	5.50497	0.00708574	0.00187297	0.0558168	0.0219434
chr16	978552	978652	6531824	0	-	0.61	(0.58,1]	chr16	648726	77	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000545827.6:ENST00000570014.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.62403	4.721325	4.81862	0.0578275	0.0102696	0.154343	0.0678072
chr17	77355197	77355297	6803911	0	+	0.62	(0.58,1]	chr17	686742	310	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.62403	4.721325	4.81862	0.0578275	0.0102696	0.154343	0.0678072
chr7	219453	219553	3305849	0	+	0.68	(0.58,1]	chr7	320161	101	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.62403	4.721325	4.81862	0.0578275	0.0102696	0.154343	0.0678072
chr7	2102731	2102831	3531262	0	-	0.62	(0.58,1]	chr7	341009	136	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000444373.6:ENST00000421113.5:ENST00000464742.5:ENST00000491858.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.62403	4.721325	4.81862	0.0578275	0.0102696	0.154343	0.0678072
chr9	93670807	93670906	4184612	0	+	0.666667	(0.58,1]	chr9	397793	32	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.62403	4.721325	4.81862	0.0578275	0.0102696	0.154343	0.0678072
chr9	133690927	133691027	4427472	0	-	0.64	(0.58,1]	chr9	423044	4	SS3_PROX	SS3_PROX:INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000371868.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.62403	4.721325	4.81862	0.0578275	0.0102696	0.154343	0.0678072
chr6	79065201	79065301	3184754	0	-	0.34	(0.33,0.36]	chr6	309201	40	INTRON	INTRON	PHIP	ENSG00000146247.14	ENST00000275034.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.70894	4.72131	4.73368	0.0798152	0.0216127	0.176933	0.105648
chr8	17799997	17800097	3946419	0	-	0.36	(0.33,0.36]	chr8	376998	192	INTRON	INTRON	MTUS1	ENSG00000129422.15	ENST00000381869.5:ENST00000693296.1:ENST00000262102.10:ENST00000523718.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.70894	4.72131	4.73368	0.0798152	0.0216127	0.176933	0.105648
chr3	60221530	60221630	1795822	0	-	0.41	(0.39,0.419]	chr3	186807	1408	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.20027	4.721045	5.24182	0.0583327	0.0441194	0.175217	0.140174
chr3	13023695	13023795	1689373	0	-	0.51	(0.485,0.523]	chr3	176542	12	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	2	118	2	3.4747	4.720935	5.96717	0.0108319	0.00295385	0.0707085	0.0300958
chr11	70815465	70815565	5062438	0	-	0.62	(0.58,1]	chr11	492713	79	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	99	2	3.68546	4.72026	5.75506	0.0116759	9.38062e-4	0.0735761	0.0135546
chr1	2160800	2160900	4233	0	+	0.67	(0.58,1]	chr1	988	42	INTRON	INTRON	PRKCZ	ENSG00000067606.17	ENST00000378567.8:ENST00000400921.6:ENST00000461106.6:ENST00000479263.5:ENST00000478770.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.49116	4.71999	4.94882	0.0354433	0.0207449	0.127188	0.102713
chr14	105216554	105216652	6058163	0	-	0.704082	(0.58,1]	chr14	594783	33	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000392557.8:ENST00000446501.6:ENST00000635152.1:ENST00000547374.5:ENST00000551787.5:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.49116	4.71999	4.94882	0.0354433	0.0207449	0.127188	0.102713
chr7	1063094	1063194	3526858	0	-	0.61	(0.58,1]	chr7	340585	79	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.49116	4.71999	4.94882	0.0354433	0.0207449	0.127188	0.102713
chr6	140779933	140780033	3279530	0	-	0.45	(0.419,0.45]	chr6	317145	1161	INTRON	INTRON	ENSG00000234147	ENSG00000234147.3	ENST00000650553.2	lncRNA	lncRNA	lncRNA	lncRNA	1	114	2	3.30797	4.71984	6.13171	0.0368429	0.00115219	0.129203	0.0157112
chr1	1225531	1225627	380444	0	-	0.708333	(0.58,1]	chr1	42851	12	INTRON	INTRON	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000403997.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.54927	4.71967	4.89007	0.0643046	0.00872525	0.161669	0.0612699
chr13	112714325	112714424	5652784	0	+	0.585859	(0.58,1]	chr13	554902	106	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000419448.1:ENST00000466946.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.54927	4.71967	4.89007	0.0643046	0.00872525	0.161669	0.0612699
chr17	38746547	38746628	6895641	0	-	0.62963	(0.58,1]	chr17	700404	2	UTR5	UTR5:EXON_MRNA:INTRON	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000611883.4:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.54927	4.71967	4.89007	0.0643046	0.00872525	0.161669	0.0612699
chr19	2334401	2334501	7189463	0	+	0.6	(0.58,1]	chr19	731775	4	SS3_PROX	SS3_PROX:INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.54927	4.71967	4.89007	0.0643046	0.00872525	0.161669	0.0612699
chr19	47227857	47227957	7392359	0	-	0.64	(0.58,1]	chr19	768099	3	SS5_PROX	SS5_PROX:INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.54927	4.71967	4.89007	0.0643046	0.00872525	0.161669	0.0612699
chr22	31625480	31625580	7788320	0	-	0.63	(0.58,1]	chr22	817186	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PISD	ENSG00000241878.12	ENST00000460723.5:ENST00000439502.7:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5:ENST00000474017.5:ENST00000478893.5:ENST00000491342.1:ENST00000422020.5:ENST00000442379.1:ENST00000429683.1:ENST00000431201.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.54927	4.71967	4.89007	0.0643046	0.00872525	0.161669	0.0612699
chr7	100231218	100231318	3653672	0	-	0.6	(0.58,1]	chr7	352068	68	INTRON	INTRON	CASTOR3	ENSG00000239521.10	ENST00000649671.1:ENST00000543273.5:ENST00000328453.9:ENST00000454084.5:ENST00000435519.6:ENST00000414739.3:ENST00000647868.1:ENST00000538588.2:ENST00000689058.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	38	2	4.54927	4.71967	4.89007	0.0643046	0.00872525	0.161669	0.0612699
chr9	124489583	124489683	4402618	0	-	0.67	(0.58,1]	chr9	419805	62	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.54927	4.71967	4.89007	0.0643046	0.00872525	0.161669	0.0612699
chr1	43596161	43596259	107412	0	+	0.642857	(0.58,1]	chr1	13240	32	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	3	129	2	3.06099	4.719605	6.37822	0.00372067	0.00252415	0.0350519	0.031696
chr8	127849341	127849441	3918336	0	+	0.52	(0.485,0.523]	chr8	374180	27	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000655594.1	lncRNA	lncRNA	lncRNA	lncRNA	2	138	2	4.13081	4.71959	5.30837	0.0314138	4.67935e-4	0.12069	0.00831353
chrX	71543666	71543766	7905785	0	+	0.38	(0.36,0.39]	chrX	828347	52	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000498566.3:ENST00000444774.3:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	92	2	3.49254	4.71946	5.9463800000000004	0.0151971	0.00987589	0.084474	0.0664239
chr1	23394033	23394133	424256	0	-	0.63	(0.58,1]	chr1	49811	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TCEA3	ENSG00000204219.11	ENST00000450454.7:ENST00000476978.2	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.6951	4.7192799999999995	4.74346	0.0521567	0.0121457	0.148503	0.0754623
chr1	228156645	228156744	358153	0	+	0.717172	(0.58,1]	chr1	40434	63	INTRON	INTRON	GJC2	ENSG00000198835.4	ENST00000366714.3	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.6951	4.7192799999999995	4.74346	0.0521567	0.0121457	0.148503	0.0754623
chr1	245798841	245798941	698760	0	-	0.62	(0.58,1]	chr1	82352	100	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000490322.1:ENST00000493441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.6951	4.7192799999999995	4.74346	0.0521567	0.0121457	0.148503	0.0754623
chr13	113028545	113028643	5655914	0	+	0.612245	(0.58,1]	chr13	555157	16	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486806.1:ENST00000473345.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.6951	4.7192799999999995	4.74346	0.0521567	0.0121457	0.148503	0.0754623
chr13	113350848	113350910	5753441	0	-	0.580645	(0.58,1]	chr13	564105	1	CDS	CDS:EXON_MRNA	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.6951	4.7192799999999995	4.74346	0.0521567	0.0121457	0.148503	0.0754623
chr14	70027942	70028042	5872662	0	+	0.67	(0.58,1]	chr14	573363	41	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.6951	4.7192799999999995	4.74346	0.0521567	0.0121457	0.148503	0.0754623
chr16	81639967	81640066	6509697	0	+	0.616162	(0.58,1]	chr16	645926	179	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.6951	4.7192799999999995	4.74346	0.0521567	0.0121457	0.148503	0.0754623
chr16	83920563	83920663	6513130	0	+	0.65	(0.58,1]	chr16	646141	52	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.6951	4.7192799999999995	4.74346	0.0521567	0.0121457	0.148503	0.0754623
chr19	41327731	41327831	7381076	0	-	0.72	(0.58,1]	chr19	765964	247	INTRON	INTRON	TGFB1	ENSG00000105329.11	ENST00000598758.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	38	2	4.6951	4.7192799999999995	4.74346	0.0521567	0.0121457	0.148503	0.0754623
chr2	9306235	9306335	714078	0	+	0.62	(0.58,1]	chr2	83385	84	INTRON	INTRON	ASAP2	ENSG00000151693.11	ENST00000315273.4:ENST00000281419.8	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.6951	4.7192799999999995	4.74346	0.0521567	0.0121457	0.148503	0.0754623
chr7	242401	242501	3306079	0	+	0.66	(0.58,1]	chr7	320161	331	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.6951	4.7192799999999995	4.74346	0.0521567	0.0121457	0.148503	0.0754623
chr9	133732322	133732422	4427904	0	-	0.71	(0.58,1]	chr9	423123	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000427237.6:ENST00000371867.5:ENST00000298628.6	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.6951	4.7192799999999995	4.74346	0.0521567	0.0121457	0.148503	0.0754623
chr9	134344125	134344225	4260864	0	+	0.65	(0.58,1]	chr9	406311	171	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.6951	4.7192799999999995	4.74346	0.0521567	0.0121457	0.148503	0.0754623
chr6	53539702	53539801	3150825	0	-	0.484848	(0.45,0.485]	chr6	307405	159	INTRON	INTRON	GCLC	ENSG00000001084.13	ENST00000650454.1:ENST00000616923.5:ENST00000643939.1:ENST00000513939.6:ENST00000504525.1:ENST00000514004.5:ENST00000505197.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	89	2	3.82378	4.7190449999999995	5.61431	0.0217589	0.0039984	0.100615	0.0370532
chr1	27488885	27488985	431240	0	-	0.4	(0.39,0.419]	chr1	50973	596	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	1	112	2	3.04731	4.71897	6.39063	0.0514906	5.25726e-4	0.148503	0.00903907
chr17	17821420	17821520	6865735	0	-	0.6	(0.58,1]	chr17	695915	5	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	206	2	4.7104799999999996	4.718695	4.72691	0.00136852	1.84649e-4	0.0226011	0.0042795
chr10	100552921	100553020	4569195	0	+	0.484848	(0.45,0.485]	chr10	436105	49	UTR3	UTR3:EXON_MRNA	HIF1AN	ENSG00000166135.14	ENST00000299163.7	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.32491	4.718605	5.1123	0.0458344	0.0418883	0.149021	0.142336
chr11	7577195	7577294	4792572	0	+	0.434343	(0.419,0.45]	chr11	459336	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PPFIBP2	ENSG00000166387.14	ENST00000684123.1:ENST00000299492.9:ENST00000527790.5:ENST00000524548.5:ENST00000529575.5:ENST00000533792.5:ENST00000532926.5:ENST00000684215.1:ENST00000650027.1:ENST00000525597.5:ENST00000529021.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.56048	4.71823	4.87598	0.0768574	0.0337332	0.174882	0.133139
chr5	119350883	119350982	2517416	0	+	0.434343	(0.419,0.45]	chr5	249997	169	INTRON	INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5:ENST00000513374.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.56048	4.71823	4.87598	0.0768574	0.0337332	0.174882	0.133139
chr14	70025145	70025245	5872634	0	+	0.45	(0.419,0.45]	chr14	573363	13	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	1	115	2	3.41842	4.718185	6.01795	0.0312055	0.00152916	0.120236	0.0191213
chr9	69161132	69161232	4164659	0	+	0.51	(0.485,0.523]	chr9	395769	90	INTRON	INTRON	TJP2	ENSG00000119139.21	ENST00000643713.1:ENST00000606364.5:ENST00000648087.1:ENST00000423935.6:ENST00000647986.1:ENST00000636438.1:ENST00000377259.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	123	2	2.81013	4.7180800000000005	6.62603	0.0154038	0.00330946	0.0869771	0.0368376
chr3	65418538	65418638	1809635	0	-	0.42	(0.419,0.45]	chr3	187193	167	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5	protein_coding	protein_coding	protein_coding	protein_coding	2	125	2	3.26754	4.71783	6.16812	0.0123115	0.00641295	0.0756356	0.0503748
chr1	77625249	77625349	515350	0	-	0.37	(0.36,0.39]	chr1	60797	402	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	111	2	3.16425	4.7178249999999995	6.2714	0.0430514	7.13729e-4	0.138389	0.0112151
chr15	84228154	84228254	6342962	0	-	0.49	(0.485,0.523]	chr15	625266	225	INTRON	INTRON	GOLGA2P7	ENSG00000225151.10	ENST00000400817.7:ENST00000559668.5:ENST00000316967.10:ENST00000559654.5:ENST00000557980.5:ENST00000557881.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	44	2	4.12717	4.71777	5.30837	0.0545434	0.0314138	0.167824	0.12069
chr18	75029362	75029462	7093577	0	+	0.49	(0.485,0.523]	chr18	722473	1083	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.12717	4.71777	5.30837	0.0545434	0.0314138	0.167824	0.12069
chr4	26962520	26962620	2025254	0	+	0.44	(0.419,0.45]	chr4	206914	44	INTRON	INTRON	STIM2	ENSG00000109689.19	ENST00000477474.3:ENST00000494628.6:ENST00000463501.5:ENST00000467011.6:ENST00000467087.7:ENST00000465503.6:ENST00000478049.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	94	2	3.39073	4.71757	6.04441	0.0149622	0.0128682	0.0835955	0.0778066
chr10	96142157	96142257	4560209	0	+	0.3	(0.29,0.33]	chr10	435112	65	INTRON	INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	141	2	2.95058	4.71754	6.4845	0.00670022	0.00381896	0.0519182	0.0398603
chrX	316413	316513	7964860	0	-	0.63	(0.58,1]	chrX	834137	1	SS5_PROX	SS5_PROX:INTRON	GTPBP6	ENSG00000178605.13	ENST00000326153.9	protein_coding	protein_coding	protein_coding	protein_coding	1	81	2	3.95573	4.71706	5.47839	0.0145198	0.00191878	0.0823104	0.0223755
chr17	66351145	66351245	6783916	0	+	0.45	(0.419,0.45]	chr17	684230	112	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	162	2	2.31264	4.717015	7.12139	0.0853623	8.12764e-5	0.181766	0.00234456
chr2	65235153	65235253	820871	0	+	0.36	(0.33,0.36]	chr2	92697	68	INTRON	INTRON	ACTR2	ENSG00000138071.15	ENST00000476840.5:ENST00000260641.10:ENST00000471552.5:ENST00000377982.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	121	2	3.29499	4.716985	6.13898	0.00953039	0.00540177	0.0658012	0.0451706
chr1	214373537	214373636	658138	0	-	0.434343	(0.419,0.45]	chr1	77614	3	INTRON	INTRON	PTPN14	ENSG00000152104.12	ENST00000366956.10:ENST00000543945.5:ENST00000473261.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.29342	4.71696	5.1405	0.0550015	0.0526662	0.167062	0.153337
chr17	55413457	55413553	6930467	0	-	0.333333	(0.33,0.36]	chr17	706224	17	INTRON	INTRON	MMD	ENSG00000108960.9	ENST00000262065.8:ENST00000649377.1:ENST00000571578.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.49572	4.716745	4.93777	0.103264	0.0144674	0.197541	0.0833845
chr4	8206907	8207005	2014081	0	+	0.346939	(0.33,0.36]	chr4	205512	9	INTRON	INTRON	SH3TC1	ENSG00000125089.18	ENST00000510763.5:ENST00000508641.2:ENST00000245105.8:ENST00000506360.5:ENST00000502669.5:ENST00000515682.5:ENST00000457650.7:ENST00000503284.5:ENST00000684698.1:ENST00000684537.1:ENST00000682056.1:ENST00000682862.1:ENST00000507891.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.49572	4.716745	4.93777	0.103264	0.0144674	0.197541	0.0833845
chr5	10743206	10743305	2612469	0	-	0.333333	(0.33,0.36]	chr5	260258	86	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5:ENST00000510546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	40	2	4.49572	4.716745	4.93777	0.103264	0.0144674	0.197541	0.0833845
chr6	109275494	109275594	2979377	0	+	0.36	(0.33,0.36]	chr6	291993	46	INTRON	INTRON	CCDC162P	ENSG00000203799.14	ENST00000368966.10	transcribed_unitary_pseudogene	transcribed_unitary_pseudogene	transcribed_unitary_pseudogene	transcribed_unitary_pseudogene	0	40	2	4.49572	4.716745	4.93777	0.103264	0.0144674	0.197541	0.0833845
chr10	63511943	63512043	4700542	0	-	0.42	(0.419,0.45]	chr10	447747	461	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000633035.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	93	2	3.77132	4.71672	5.66212	0.0266819	0.00544312	0.111563	0.0454065
chr1	120460938	120461031	224708	0	+	0.483871	(0.45,0.485]	chr1	24819	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF8	ENSG00000270231.4	ENST00000652355.1:ENST00000583271.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	43	2	4.22352	4.71629	5.20906	0.0496712	0.0399616	0.160725	0.133954
chr13	113045551	113045646	5656088	0	+	0.484211	(0.45,0.485]	chr13	555176	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000480321.1:ENST00000397021.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.22352	4.71629	5.20906	0.0496712	0.0399616	0.160725	0.133954
chr2	37299461	37299561	1123216	0	-	0.47	(0.45,0.485]	chr2	122929	58	INTRON	INTRON	PRKD3	ENSG00000115825.11	ENST00000234179.8:ENST00000379066.5:ENST00000494667.5:ENST00000443187.1:ENST00000464552.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.22352	4.71629	5.20906	0.0496712	0.0399616	0.160725	0.133954
chr2	174211173	174211273	1320566	0	-	0.42	(0.419,0.45]	chr2	141020	688	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	5	474	2	4.19756	4.71586	5.23416	0.0014049	2.0769e-4	0.0229261	0.00464072
chr2	63026042	63026142	817187	0	+	0.32	(0.29,0.33]	chr2	92205	289	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000496857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	117	2	3.25057	4.715855	6.18114	0.00669623	0.00543459	0.0541591	0.0454065
chr11	711085	711185	4785349	0	+	0.69	(0.58,1]	chr11	458134	2	INTRON	INTRON	EPS8L2	ENSG00000177106.17	ENST00000524763.5:ENST00000533256.5:ENST00000614442.4:ENST00000534755.5:ENST00000529346.5:ENST00000650127.1:ENST00000526909.5:ENST00000318562.13:ENST00000533500.5:ENST00000527807.5:ENST00000531348.5:ENST00000530636.5:ENST00000526198.5:ENST00000530118.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	223	2	4.38079	4.715795	5.0508	6.34858e-4	5.47609e-4	0.014808	0.0093303
chr10	119442861	119442952	4595685	0	+	0.527473	(0.523,0.58]	chr10	439227	4	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	2	124	2	2.75313	4.71534	6.67755	0.0173428	0.00302793	0.0927775	0.0350226
chr1	26855208	26855306	69811	0	+	0.55102	(0.523,0.58]	chr1	7824	15	UTR3	UTR3:EXON_MRNA:INTRON	ZDHHC18	ENSG00000204160.12	ENST00000374142.9:ENST00000488397.3	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.5249	4.71495	4.905	0.0563605	0.0266135	0.154188	0.118113
chr1	204083375	204083474	322153	0	+	0.555556	(0.523,0.58]	chr1	36272	48	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1:ENST00000528591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.5249	4.71495	4.905	0.0563605	0.0266135	0.154188	0.118113
chr2	121655705	121655805	888193	0	+	0.56	(0.523,0.58]	chr2	100466	28	INTRON	INTRON	NIFK-AS1	ENSG00000236859.8	ENST00000667483.1:ENST00000662168.1:ENST00000654001.1:ENST00000659307.1:ENST00000419902.3:ENST00000690074.1:ENST00000666647.1	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.5249	4.71495	4.905	0.0563605	0.0266135	0.154188	0.118113
chr2	239337791	239337891	1392088	0	-	0.55	(0.523,0.58]	chr2	148752	133	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.5249	4.71495	4.905	0.0563605	0.0266135	0.154188	0.118113
chr21	8811266	8811366	7637428	0	-	0.56	(0.523,0.58]	chr21	798930	37	INTRON	INTRON	ENSG00000286033	ENSG00000286033.1	ENST00000651312.1	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.5249	4.71495	4.905	0.0563605	0.0266135	0.154188	0.118113
chr3	48408542	48408637	1766471	0	-	0.526316	(0.523,0.58]	chr3	182156	11	INTRON	INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000485535.5:ENST00000456774.5:ENST00000497627.1:ENST00000483676.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.5249	4.71495	4.905	0.0563605	0.0266135	0.154188	0.118113
chr9	135839458	135839558	4431141	0	-	0.57	(0.523,0.58]	chr9	423507	115	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.5249	4.71495	4.905	0.0563605	0.0266135	0.154188	0.118113
chr16	83921658	83921757	6513141	0	+	0.474747	(0.45,0.485]	chr16	646141	63	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.59225	4.7149	4.83755	0.06646	0.0259502	0.162385	0.116361
chr21	46289860	46289957	7632097	0	+	0.453608	(0.45,0.485]	chr21	798050	24	INTRON	INTRON	YBEY	ENSG00000182362.14	ENST00000397701.9:ENST00000468924.5:ENST00000329319.7:ENST00000339195.10:ENST00000397692.5:ENST00000397694.5:ENST00000492864.1:ENST00000397691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.59225	4.7149	4.83755	0.06646	0.0259502	0.162385	0.116361
chr22	29628157	29628257	7708599	0	+	0.47	(0.45,0.485]	chr22	806536	1	SS3_PROX	SS3_PROX:INTRON	NF2	ENSG00000186575.19	ENST00000413209.6:ENST00000672805.1:ENST00000403435.5:ENST00000672461.1:ENST00000361452.8:ENST00000338641.10:ENST00000672896.1:ENST00000403999.7:ENST00000334961.11:ENST00000353887.8:ENST00000432151.5:ENST00000361676.8:ENST00000397789.3:ENST00000673312.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.59225	4.7149	4.83755	0.06646	0.0259502	0.162385	0.116361
chr5	96966461	96966561	2489021	0	+	0.46	(0.45,0.485]	chr5	248004	73	INTRON	INTRON	LNPEP	ENSG00000113441.16	ENST00000231368.10:ENST00000395770.3	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.59225	4.7149	4.83755	0.06646	0.0259502	0.162385	0.116361
chr7	47534804	47534904	3589162	0	-	0.46	(0.45,0.485]	chr7	346144	53	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.59225	4.7149	4.83755	0.06646	0.0259502	0.162385	0.116361
chr11	70584729	70584829	5060120	0	-	0.47	(0.45,0.485]	chr11	492663	814	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	92	2	3.26377	4.71464	6.16551	0.0149252	0.00879664	0.0848525	0.0630845
chr17	77350099	77350199	6803860	0	+	0.59	(0.58,1]	chr17	686742	259	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	132	2	3.13672	4.71439	6.29206	0.0147505	1.89825e-4	0.0828332	0.0043642
chr10	79203281	79203380	4533391	0	+	0.444444	(0.419,0.45]	chr10	432445	12	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.38804	4.714235	5.04043	0.0625897	0.0451818	0.160305	0.154539
chr20	62272559	62272659	7506832	0	+	0.61	(0.58,1]	chr20	782704	3	SS5_PROX	SS5_PROX:INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000642957.1:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	103	2	3.87867	4.714225	5.54978	0.00797934	0.00165911	0.0596361	0.0202545
chr1	19145407	19145502	409428	0	-	0.305263	(0.29,0.33]	chr1	47630	1	SS5_PROX	SS5_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1:ENST00000465036.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.51618	4.714175	4.91217	0.0522244	0.0285091	0.148503	0.123012
chr10	97545332	97545432	4563218	0	+	0.46	(0.45,0.485]	chr10	435334	457	INTRON	INTRON	UBTD1	ENSG00000165886.5	ENST00000370664.4	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.41963	4.71411	5.00859	0.052901	0.0355247	0.14912	0.137983
chr15	74895612	74895702	6152701	0	+	0.466667	(0.45,0.485]	chr15	605240	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MPI	ENSG00000178802.18	ENST00000569931.5:ENST00000566377.5:ENST00000352410.9:ENST00000323744.10:ENST00000535694.5:ENST00000563786.5:ENST00000562800.5:ENST00000564003.5:ENST00000563422.5:ENST00000561470.5:ENST00000562606.5:ENST00000567177.1:ENST00000566556.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.41963	4.71411	5.00859	0.052901	0.0355247	0.14912	0.137983
chr2	91628760	91628856	1217372	0	-	0.479167	(0.45,0.485]	chr2	131095	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	LSP1P4	ENSG00000143429.11	ENST00000692025.1:ENST00000423774.3:ENST00000609777.6:ENST00000692653.1:ENST00000608501.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	41	2	4.41963	4.71411	5.00859	0.052901	0.0355247	0.14912	0.137983
chr2	235047013	235047112	1062445	0	+	0.474747	(0.45,0.485]	chr2	115634	34	INTRON	INTRON	SH3BP4	ENSG00000130147.16	ENST00000392011.7:ENST00000409212.5:ENST00000344528.8	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.41963	4.71411	5.00859	0.052901	0.0355247	0.14912	0.137983
chr7	133845215	133845314	3491097	0	+	0.464646	(0.45,0.485]	chr7	336715	273	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.41963	4.71411	5.00859	0.052901	0.0355247	0.14912	0.137983
chr19	40084898	40084998	7379176	0	-	0.56	(0.523,0.58]	chr19	765578	1	SS3_PROX	SS3_PROX:INTRON	ZNF780A	ENSG00000197782.15	ENST00000450241.6:ENST00000414720.6:ENST00000455521.5:ENST00000340963.9:ENST00000683561.1:ENST00000595687.6:ENST00000594395.5:ENST00000595773.5:ENST00000599368.5:ENST00000601715.5:ENST00000601688.5:ENST00000599972.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	1	105	2	3.19317	4.714085	6.235	0.0366207	4.59688e-4	0.128697	0.00821903
chr15	85217006	85217106	6344706	0	-	0.38	(0.36,0.39]	chr15	625513	67	INTRON	INTRON	ENSG00000229212	ENSG00000229212.8	ENST00000648573.1:ENST00000560756.5:ENST00000560811.5:ENST00000560405.5:ENST00000558470.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	41	2	4.48559	4.713765	4.94194	0.064883	0.036329	0.162218	0.139793
chr22	30571000	30571099	7786385	0	-	0.363636	(0.36,0.39]	chr22	816745	50	INTRON	INTRON	GAL3ST1	ENSG00000128242.13	ENST00000406361.6:ENST00000402369.5:ENST00000431313.5:ENST00000416358.5:ENST00000443136.5:ENST00000423371.5:ENST00000426220.5:ENST00000411821.5:ENST00000445645.5:ENST00000448604.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.48559	4.713765	4.94194	0.064883	0.036329	0.162218	0.139793
chr1	8633377	8633477	393886	0	-	0.56	(0.523,0.58]	chr1	45057	86	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	107	2	3.51606	4.713665	5.91127	0.0216194	0.00111349	0.100615	0.0152496
chr16	3534341	3534440	6377812	0	+	0.626263	(0.58,1]	chr16	630564	13	UTR3	UTR3:EXON_MRNA:INTRON	CLUAP1	ENSG00000103351.13	ENST00000576634.6:ENST00000341633.9:ENST00000571025.5:ENST00000572600.5:ENST00000572632.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.66416	4.7135	4.76284	0.0471737	0.0144381	0.143232	0.0833845
chr17	17771036	17771136	6689746	0	+	0.63	(0.58,1]	chr17	671344	465	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.66416	4.7135	4.76284	0.0471737	0.0144381	0.143232	0.0833845
chr18	80033550	80033650	7182845	0	-	0.7	(0.58,1]	chr18	730351	3	SS5_PROX	SS5_PROX:INTRON	TXNL4A	ENSG00000141759.15	ENST00000585474.5:ENST00000592957.1:ENST00000589926.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.66416	4.7135	4.76284	0.0471737	0.0144381	0.143232	0.0833845
chr19	36215792	36215888	7248156	0	+	0.447917	(0.419,0.45]	chr19	742979	2	INTRON	INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	93	2	3.79893	4.71349	5.62805	0.0280406	0.00509983	0.113651	0.0433857
chr1	148571270	148571359	582414	0	-	0.494382	(0.485,0.523]	chr1	67112	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF14	ENSG00000270629.7	ENST00000619423.4:ENST00000614999.4:ENST00000621066.4:ENST00000611826.4:ENST00000616120.4:ENST00000621070.4	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.52142	4.71342	4.90542	0.0561086	0.0273555	0.154188	0.119337
chr12	80976332	80976432	5281994	0	+	0.49	(0.485,0.523]	chr12	514436	254	INTRON	INTRON	ACSS3	ENSG00000111058.8	ENST00000549175.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.52142	4.71342	4.90542	0.0561086	0.0273555	0.154188	0.119337
chr19	12482065	12482165	7335632	0	-	0.5	(0.485,0.523]	chr19	758950	149	INTRON	INTRON	ZNF709	ENSG00000242852.7	ENST00000397732.8:ENST00000455490.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.52142	4.71342	4.90542	0.0561086	0.0273555	0.154188	0.119337
chr19	18642337	18642437	7224392	0	+	0.51	(0.485,0.523]	chr19	739306	48	INTRON	INTRON	KLHL26	ENSG00000167487.12	ENST00000595182.5:ENST00000300976.9:ENST00000599006.5:ENST00000600657.5:ENST00000595423.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.52142	4.71342	4.90542	0.0561086	0.0273555	0.154188	0.119337
chrX	119690387	119690486	8095657	0	-	0.515152	(0.485,0.523]	chrX	843956	144	INTRON	INTRON	SEPTIN6	ENSG00000125354.24	ENST00000360156.11:ENST00000354228.8:ENST00000460411.5:ENST00000489216.5:ENST00000354416.7:ENST00000394610.7:ENST00000343984.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.52142	4.71342	4.90542	0.0561086	0.0273555	0.154188	0.119337
chr1	17669989	17670089	54911	0	+	0.56	(0.523,0.58]	chr1	5603	50	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	87	2	3.51663	4.7133	5.90997	0.012016	0.00782908	0.0743424	0.0574276
chr6	131646227	131646327	3006978	0	+	0.39	(0.36,0.39]	chr6	294028	43	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000423831.5:ENST00000470930.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.6317	4.71314	4.79458	0.0950937	0.0207145	0.189021	0.102713
chr14	54648983	54649083	5820263	0	+	0.43	(0.419,0.45]	chr14	569049	805	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	131	2	2.74434	4.71288	6.68142	0.0208637	0.00529005	0.102883	0.047841
chrX	77538178	77538278	8072543	0	-	0.4	(0.39,0.419]	chrX	842041	144	INTRON	INTRON	ATRX	ENSG00000085224.23	ENST00000373344.11:ENST00000395603.7:ENST00000480283.5:ENST00000675732.1:ENST00000623706.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.48504	4.71282	4.9406	0.0658437	0.0364893	0.162385	0.139793
chr2	203358113	203358213	1000701	0	+	0.46	(0.45,0.485]	chr2	109857	24	INTRON	INTRON	ABI2	ENSG00000138443.17	ENST00000261017.9:ENST00000447762.5:ENST00000416001.5:ENST00000430418.5:ENST00000295851.10:ENST00000261018.12:ENST00000425253.1:ENST00000424558.5:ENST00000413635.5:ENST00000431886.5:ENST00000444584.1:ENST00000417864.5:ENST00000494215.1:ENST00000376135.5:ENST00000422511.6:ENST00000261016.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	119	2	3.12149	4.712435	6.30338	0.00776276	0.00692617	0.0570408	0.0553898
chr7	6700720	6700820	3542720	0	-	0.45	(0.419,0.45]	chr7	342316	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000404360.5:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	1	113	2	3.2131	4.712305	6.21151	0.0423761	9.41863e-4	0.13762	0.0135546
chr20	25493995	25494093	7539893	0	-	0.653061	(0.58,1]	chr20	787018	21	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5:ENST00000461642.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	272	2	4.06347	4.712294999999999	5.36112	0.00213114	2.22261e-5	0.0290277	9.06675e-4
chr1	183473490	183473555	301141	0	+	0.415385	(0.39,0.419]	chr1	34238	1	SS3_PROX	SS3_PROX:INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.63037	4.7121949999999995	4.79402	0.0963077	0.0208208	0.189169	0.102713
chr14	39272765	39272864	5792229	0	+	0.393939	(0.39,0.419]	chr14	567494	49	INTRON	INTRON	MIA2	ENSG00000150527.18	ENST00000553728.1:ENST00000640607.2:ENST00000554392.5:ENST00000555716.5:ENST00000341749.7:ENST00000557038.5:ENST00000396165.8:ENST00000556990.1:ENST00000396158.6:ENST00000280083.7:ENST00000341502.9:ENST00000556148.5:ENST00000348007.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.63037	4.7121949999999995	4.79402	0.0963077	0.0208208	0.189169	0.102713
chr6	127309480	127309580	3251236	0	-	0.41	(0.39,0.419]	chr6	314921	149	INTRON	INTRON	ECHDC1	ENSG00000093144.19	ENST00000454859.8:ENST00000531967.5:ENST00000474289.6:ENST00000368295.8:ENST00000454591.6:ENST00000528402.5:ENST00000479525.6:ENST00000368291.6:ENST00000475319.1:ENST00000430841.6:ENST00000368289.6:ENST00000417628.6:ENST00000368292.10:ENST00000436638.5:ENST00000460558.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.63037	4.7121949999999995	4.79402	0.0963077	0.0208208	0.189169	0.102713
chr6	160069014	160069114	3066306	0	+	0.52	(0.485,0.523]	chr6	298077	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	88	2	3.4289	4.71182	5.99474	0.0103305	0.00977282	0.0684871	0.0664239
chr14	104870555	104870655	5925917	0	+	0.68	(0.58,1]	chr14	579942	16	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	4.31005	4.7118	5.11355	0.0271806	6.7911e-4	0.112113	0.0108488
chr12	57152030	57152129	5240640	0	+	0.565657	(0.523,0.58]	chr12	510200	21	INTRON	INTRON	LRP1	ENSG00000123384.14	ENST00000243077.8:ENST00000554174.1	protein_coding	protein_coding	protein_coding	protein_coding	1	90	2	3.27377	4.71164	6.14951	0.0137592	0.00793972	0.0814923	0.0596361
chr17	44041454	44041554	6910331	0	-	0.39	(0.36,0.39]	chr17	703395	8	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.56076	4.711625	4.86249	0.103289	0.0181775	0.197541	0.0955836
chr18	32756346	32756446	7143277	0	-	0.38	(0.36,0.39]	chr18	726510	139	INTRON	INTRON	KLHL14	ENSG00000197705.10	ENST00000359358.9:ENST00000358095.4	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.56076	4.711625	4.86249	0.103289	0.0181775	0.197541	0.0955836
chr5	10694871	10694971	2611985	0	-	0.38	(0.36,0.39]	chr5	260254	109	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.56076	4.711625	4.86249	0.103289	0.0181775	0.197541	0.0955836
chr6	97206344	97206444	3206620	0	-	0.38	(0.36,0.39]	chr6	311322	193	INTRON	INTRON	MMS22L	ENSG00000146263.12	ENST00000683635.1:ENST00000275053.8:ENST00000369251.6	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.56076	4.711625	4.86249	0.103289	0.0181775	0.197541	0.0955836
chr12	62354042	62354140	5245875	0	+	0.408163	(0.39,0.419]	chr12	511251	44	INTRON	INTRON	USP15	ENSG00000135655.16	ENST00000353364.7:ENST00000550632.5:ENST00000280377.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	93	2	3.34529	4.711575	6.07786	0.0137041	0.012565	0.0814223	0.0761905
chr22	29828296	29828395	7784840	0	-	0.444444	(0.419,0.45]	chr22	816450	3	INTRON	INTRON	ASCC2	ENSG00000100325.15	ENST00000542393.5:ENST00000307790.8:ENST00000458594.5:ENST00000397771.6:ENST00000449900.6:ENST00000431535.5:ENST00000495967.5:ENST00000412689.5:ENST00000465667.6:ENST00000495681.5:ENST00000462454.1:ENST00000453160.5:ENST00000460313.1:ENST00000454854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	151	2	2.75834	4.711525	6.66471	0.0128076	0.00544202	0.0774877	0.0486855
chr3	136300235	136300333	1574581	0	+	0.540816	(0.523,0.58]	chr3	167002	18	INTRON	INTRON	PCCB	ENSG00000114054.14	ENST00000251654.9:ENST00000490504.5:ENST00000483687.5:ENST00000468777.5:ENST00000462637.5:ENST00000466072.5:ENST00000484181.5:ENST00000482086.5:ENST00000471595.5:ENST00000469217.5:ENST00000478469.5:ENST00000474833.5:ENST00000475214.5:ENST00000473073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	88	2	3.98894	4.711525	5.43411	0.026041	0.00237791	0.109673	0.026
chr6	169660262	169660362	3304474	0	-	0.64	(0.58,1]	chr6	319897	2	SS5_PROX	SS5_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2:ENST00000467418.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	108	2	3.13356	4.7113499999999995	6.28914	0.00559148	0.00303562	0.0460395	0.0350226
chr1	113799533	113799633	565174	0	-	0.39	(0.36,0.39]	chr1	64830	11	INTRON	INTRON	RSBN1	ENSG00000081019.14	ENST00000261441.9:ENST00000612242.4:ENST00000476412.5:ENST00000615321.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.69932	4.711315	4.72331	0.0877431	0.0236929	0.183437	0.111208
chr3	15236825	15236923	1417501	0	+	0.5	(0.485,0.523]	chr3	152255	13	INTRON	INTRON	CAPN7	ENSG00000131375.10	ENST00000253693.7:ENST00000415565.1	protein_coding	protein_coding	protein_coding	protein_coding	1	89	2	3.34812	4.7112750000000005	6.07443	0.0117752	0.00899749	0.0743709	0.0637469
chr8	108457419	108457518	3902461	0	+	0.40404	(0.39,0.419]	chr8	372963	11	INTRON	INTRON	EMC2	ENSG00000104412.8	ENST00000220853.8:ENST00000517784.5:ENST00000519642.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.55943	4.71068	4.86193	0.104562	0.0182739	0.19835	0.0958352
chr3	120629713	120629811	1887404	0	-	0.397959	(0.39,0.419]	chr3	191478	8	INTRON	INTRON	HGD	ENSG00000113924.12	ENST00000283871.10:ENST00000492108.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	45	2	4.09132	4.710515	5.32971	0.0689553	0.0390381	0.193274	0.131575
chr6	28123611	28123711	3114582	0	-	0.4	(0.39,0.419]	chr6	302031	4	SS3_PROX	SS3_PROX:INTRON	ZSCAN16-AS1	ENSG00000269293.4	ENST00000660873.1:ENST00000667674.1:ENST00000600652.1:ENST00000602810.2	lncRNA	lncRNA	lncRNA	lncRNA	0	45	2	4.09132	4.710515	5.32971	0.0689553	0.0390381	0.193274	0.131575
chr8	134321918	134322018	4086866	0	-	0.4	(0.39,0.419]	chr8	388485	1229	INTRON	INTRON	ENSG00000288067	ENSG00000288067.1	ENST00000661266.1	lncRNA	lncRNA	lncRNA	lncRNA	0	45	2	4.09132	4.710515	5.32971	0.0689553	0.0390381	0.193274	0.131575
chr12	116054087	116054186	5511721	0	-	0.393939	(0.39,0.419]	chr12	542755	311	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000648737.1:ENST00000548743.2:ENST00000647567.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.69798	4.71037	4.72276	0.088901	0.0238104	0.183874	0.111436
chr20	31794648	31794748	7454091	0	+	0.4	(0.39,0.419]	chr20	775879	1	SS5_PROX	SS5_PROX:INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.69798	4.71037	4.72276	0.088901	0.0238104	0.183874	0.111436
chr3	9465120	9465214	1402808	0	+	0.414894	(0.39,0.419]	chr3	150226	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000406341.5:ENST00000670063.1:ENST00000684055.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000691988.1:ENST00000466242.5:ENST00000682236.1:ENST00000421188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.69798	4.71037	4.72276	0.088901	0.0238104	0.183874	0.111436
chr5	163395217	163395317	2807950	0	-	0.4	(0.39,0.419]	chr5	275015	1379	INTRON	INTRON	ENSG00000254186	ENSG00000254186.3	ENST00000646617.1:ENST00000503504.1	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.69798	4.71037	4.72276	0.088901	0.0238104	0.183874	0.111436
chr1	43557729	43557828	107016	0	+	0.646465	(0.58,1]	chr1	13192	34	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	132	2	3.15491	4.710175	6.26544	0.0142368	2.06156e-4	0.0817691	0.00461335
chr10	124936259	124936359	4605609	0	+	0.4	(0.39,0.419]	chr10	440370	186	INTRON	INTRON	ENSG00000249456	ENSG00000249456.1	ENST00000508096.1	lncRNA	lncRNA	lncRNA	lncRNA	1	92	2	3.8551	4.71014	5.56518	0.027797	0.00424346	0.112962	0.0383199
chr3	171733043	171733143	1957778	0	-	0.36	(0.33,0.36]	chr3	199044	2	SS5_PROX	SS5_PROX:INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9:ENST00000498278.5:ENST00000475273.6:ENST00000440204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	91	2	3.38283	4.710115	6.0374	0.0120576	0.0113089	0.0754623	0.0722887
chr7	141767855	141767954	3510009	0	+	0.414141	(0.39,0.419]	chr7	338351	171	INTRON	INTRON	SSBP1	ENSG00000106028.11	ENST00000465582.5	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	3.59071	4.709945	5.82918	0.0186329	0.00792247	0.0932878	0.057762
chr6	48067555	48067655	3146624	0	-	0.45	(0.419,0.45]	chr6	306785	1	SS5_PROX	SS5_PROX:INTRON	PTCHD4	ENSG00000244694.8	ENST00000339488.9:ENST00000398738.3:ENST00000679966.1	protein_coding	protein_coding	protein_coding	protein_coding	5	481	2	4.47901	4.709709999999999	4.94041	0.00240485	9.16614e-5	0.0309229	0.00256057
chr4	70722485	70722573	2054549	0	+	0.454545	(0.45,0.485]	chr4	209968	7	UTR5	UTR5:EXON_MRNA:INTRON	RUFY3	ENSG00000018189.13	ENST00000503876.5:ENST00000417478.6:ENST00000381006.8:ENST00000226328.8	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	3.63831	4.7096350000000005	5.78096	0.0166968	0.00630258	0.0884836	0.0501656
chr6	131698015	131698115	3007513	0	+	0.35	(0.33,0.36]	chr6	294103	40	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000414305.5:ENST00000357639.8:ENST00000358229.6	protein_coding	protein_coding	protein_coding	protein_coding	2	270	2	4.34915	4.7094450000000005	5.06974	0.00139224	0.00111275	0.022808	0.0152496
chr3	65419936	65420035	1809649	0	-	0.515152	(0.485,0.523]	chr3	187193	181	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5	protein_coding	protein_coding	protein_coding	protein_coding	2	118	2	2.9997	4.70873	6.41776	0.00986385	0.00486906	0.0664239	0.0456282
chr15	57275159	57275258	6113940	0	+	0.40404	(0.39,0.419]	chr15	601729	15	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000543579.5:ENST00000537840.5:ENST00000343827.7:ENST00000559710.5:ENST00000559703.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	91	2	3.71423	4.7087200000000005	5.70321	0.0226065	0.00594315	0.102982	0.0479866
chr17	3642161	3642261	6670314	0	+	0.45	(0.419,0.45]	chr17	668175	15	INTRON	INTRON	CTNS	ENSG00000040531.16	ENST00000381870.8:ENST00000673965.1:ENST00000452111.5:ENST00000673669.1:ENST00000574776.6:ENST00000488623.6:ENST00000495445.5:ENST00000467663.5:ENST00000046640.9:ENST00000574218.1:ENST00000399306.7:ENST00000576979.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	98	2	4.13851	4.708595	5.27868	0.0457732	0.00222652	0.142336	0.0248148
chr2	11289235	11289335	1088847	0	-	0.41	(0.39,0.419]	chr2	118747	11	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	91	2	3.55811	4.708565	5.85902	0.0177874	0.00853617	0.0914273	0.0610387
chr16	81542482	81542582	6508718	0	+	0.46	(0.45,0.485]	chr16	645911	466	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	3.60494	4.70852	5.8121	0.0158765	0.00682726	0.0859576	0.0525149
chr8	629237	629337	3932012	0	-	0.56	(0.523,0.58]	chr8	376005	16	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	109	2	3.64376	4.708315	5.77287	0.0173955	0.00160162	0.0901374	0.0197827
chr6	117582156	117582256	3242178	0	-	0.43	(0.419,0.45]	chr6	314277	27	INTRON	INTRON	GOPC	ENSG00000047932.14	ENST00000052569.10:ENST00000368498.7:ENST00000535237.2	protein_coding	protein_coding	protein_coding	protein_coding	1	114	2	2.94439	4.70784	6.47129	0.062072	4.80774e-4	0.15958	0.00851282
chr12	89348195	89348291	5468467	0	-	0.364583	(0.36,0.39]	chr12	537628	11	UTR3	UTR3:EXON_MRNA	DUSP6	ENSG00000139318.8	ENST00000279488.8	protein_coding	protein_coding	protein_coding	protein_coding	3	148	2	2.79277	4.707705	6.62264	0.0113592	0.00490832	0.0720467	0.0457614
chr5	59427195	59427295	2668405	0	-	0.35	(0.33,0.36]	chr5	264339	704	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.57958	4.70748	4.83538	0.0679743	0.0288057	0.164413	0.123764
chr7	55553510	55553610	3592449	0	-	0.35	(0.33,0.36]	chr7	346472	3	SS5_PROX	SS5_PROX:INTRON	VOPP1	ENSG00000154978.13	ENST00000462326.5:ENST00000285279.10:ENST00000428648.5:ENST00000454227.5:ENST00000427700.1:ENST00000452832.5:ENST00000453112.5:ENST00000471168.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.57958	4.70748	4.83538	0.0679743	0.0288057	0.164413	0.123764
chr12	132542823	132542922	5353044	0	+	0.535354	(0.523,0.58]	chr12	523670	145	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.58058	4.70741	4.83424	0.0860403	0.0144272	0.181766	0.0833845
chr17	80927769	80927868	6812766	0	+	0.575758	(0.523,0.58]	chr17	687960	19	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.58058	4.70741	4.83424	0.0860403	0.0144272	0.181766	0.0833845
chr19	16873163	16873263	7218117	0	+	0.56	(0.523,0.58]	chr19	737687	6	INTRON	INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000595541.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.58058	4.70741	4.83424	0.0860403	0.0144272	0.181766	0.0833845
chr7	151112183	151112244	3515661	0	+	0.540984	(0.523,0.58]	chr7	339362	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	AGAP3	ENSG00000133612.19	ENST00000490097.5:ENST00000463381.5:ENST00000397238.7:ENST00000622464.4:ENST00000479901.5:ENST00000473312.5:ENST00000469901.5:ENST00000476375.5:ENST00000492234.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.58058	4.70741	4.83424	0.0860403	0.0144272	0.181766	0.0833845
chr11	64143566	64143666	5049013	0	-	0.55	(0.523,0.58]	chr11	490257	168	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	147	2	3.50466	4.707315	5.90997	0.012016	0.00143815	0.0743424	0.0183435
chr12	122239024	122239124	5529395	0	-	0.54	(0.523,0.58]	chr12	544926	3	SS3_PROX	SS3_PROX:INTRON	VPS33A	ENSG00000139719.11	ENST00000267199.9:ENST00000544349.6:ENST00000643696.1:ENST00000543633.5:ENST00000541169.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.65157	4.707235000000001	4.7629	0.0787008	0.0167014	0.175203	0.0917029
chr15	34408834	34408934	6217546	0	-	0.54	(0.523,0.58]	chr15	612287	7	INTRON	INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000569781.1:ENST00000565885.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.65157	4.707235000000001	4.7629	0.0787008	0.0167014	0.175203	0.0917029
chr19	16370548	16370647	7343635	0	-	0.535354	(0.523,0.58]	chr19	760668	82	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.65157	4.707235000000001	4.7629	0.0787008	0.0167014	0.175203	0.0917029
chr21	41830722	41830821	7673629	0	-	0.535354	(0.523,0.58]	chr21	801978	20	INTRON	INTRON	PRDM15	ENSG00000141956.14	ENST00000422911.6:ENST00000441787.5:ENST00000449395.6:ENST00000398548.6:ENST00000447016.6:ENST00000269844.5:ENST00000491486.5:ENST00000489661.5:ENST00000496124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.65157	4.707235000000001	4.7629	0.0787008	0.0167014	0.175203	0.0917029
chr22	20522555	20522654	7687553	0	+	0.565657	(0.523,0.58]	chr22	804334	32	INTRON	INTRON	MED15	ENSG00000099917.17	ENST00000445987.5:ENST00000444094.5:ENST00000414658.5:ENST00000486656.5:ENST00000433831.5:ENST00000432052.5:ENST00000292733.11:ENST00000263205.11:ENST00000477824.5:ENST00000406969.5:ENST00000382974.6:ENST00000441501.5:ENST00000438962.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.65157	4.707235000000001	4.7629	0.0787008	0.0167014	0.175203	0.0917029
chr22	35850482	35850582	7804043	0	-	0.53	(0.523,0.58]	chr22	817785	100	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000359369.8:ENST00000695807.1:ENST00000408983.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.65157	4.707235000000001	4.7629	0.0787008	0.0167014	0.175203	0.0917029
chr3	113087723	113087823	1538101	0	+	0.53	(0.523,0.58]	chr3	163239	254	INTRON	INTRON	NEPRO-AS1	ENSG00000240057.7	ENST00000655310.1:ENST00000686071.1:ENST00000470313.6:ENST00000496389.5:ENST00000467342.1:ENST00000460707.1	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.65157	4.707235000000001	4.7629	0.0787008	0.0167014	0.175203	0.0917029
chr8	142396093	142396193	4095013	0	-	0.57	(0.523,0.58]	chr8	389043	297	INTRON	INTRON	TSNARE1	ENSG00000171045.16	ENST00000524325.6:ENST00000307180.4:ENST00000519651.5:ENST00000520462.5:ENST00000518720.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.65157	4.707235000000001	4.7629	0.0787008	0.0167014	0.175203	0.0917029
chrX	1423633	1423732	7965719	0	-	0.555556	(0.523,0.58]	chrX	834272	14	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.65157	4.707235000000001	4.7629	0.0787008	0.0167014	0.175203	0.0917029
chr5	76509047	76509147	2458190	0	+	0.34	(0.33,0.36]	chr5	245482	461	INTRON	INTRON	IQGAP2	ENSG00000145703.17	ENST00000274364.11:ENST00000514350.5	protein_coding	protein_coding	protein_coding	protein_coding	1	90	2	3.838	4.70717	5.57634	0.0237329	0.00414833	0.10525	0.0377122
chr7	27802511	27802608	3333372	0	+	0.350515	(0.33,0.36]	chr7	322783	21	INTRON	INTRON	TAX1BP1	ENSG00000106052.14	ENST00000543117.5:ENST00000433216.6:ENST00000265393.10:ENST00000409980.5:ENST00000416801.6:ENST00000396319.7:ENST00000457186.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	90	2	3.838	4.70717	5.57634	0.0237329	0.00414833	0.10525	0.0377122
chr11	61774462	61774562	4862721	0	+	0.46	(0.45,0.485]	chr11	466036	3	SS5_PROX	SS5_PROX:INTRON	MYRF	ENSG00000124920.14	ENST00000278836.10:ENST00000265460.9:ENST00000675319.1	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.11446	4.707095000000001	5.29973	0.0592571	0.035042	0.176157	0.12704
chr8	503688	503788	3931441	0	-	0.56	(0.523,0.58]	chr8	375980	87	INTRON	INTRON	TDRP	ENSG00000180190.13	ENST00000523656.5:ENST00000324079.11	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	3.75634	4.706915	5.65749	0.0182707	0.00434055	0.0921579	0.0390182
chr19	35000886	35000986	7244865	0	+	0.78	(0.58,1]	chr19	742058	4	SS5_PROX	SS5_PROX:INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	217	2	3.31888	4.70669	6.0945	0.00513401	3.47472e-4	0.0470726	0.00673552
chr15	92971364	92971464	6190542	0	+	0.31	(0.29,0.33]	chr15	609439	2	SS3_PROX	SS3_PROX:INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000625990.3:ENST00000637572.1:ENST00000636881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.58769	4.706565	4.82544	0.0806047	0.0156279	0.177452	0.0877396
chr2	186127709	186127809	1338580	0	-	0.3	(0.29,0.33]	chr2	142311	88	INTRON	INTRON	LINC01473	ENSG00000237877.7	ENST00000658984.1:ENST00000658990.1:ENST00000655126.1:ENST00000667839.1:ENST00000670612.1:ENST00000668985.1:ENST00000661574.1:ENST00000666677.1:ENST00000665629.1:ENST00000671116.1:ENST00000419719.2:ENST00000667056.1:ENST00000671599.1	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.58769	4.706565	4.82544	0.0806047	0.0156279	0.177452	0.0877396
chr1	27461207	27461307	430963	0	-	0.33	(0.29,0.33]	chr1	50973	319	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.65868	4.7064	4.75412	0.0735584	0.0180435	0.17026	0.0952934
chr2	47336518	47336618	1141971	0	-	0.5	(0.485,0.523]	chr2	124898	31	INTRON	INTRON	EPCAM-DT	ENSG00000234690.7	ENST00000448713.5:ENST00000441997.5:ENST00000419035.1:ENST00000450550.5:ENST00000413185.2	lncRNA	lncRNA	lncRNA	lncRNA	1	90	2	3.26255	4.706245	6.14994	0.0142848	0.00788098	0.0833845	0.059464500000000003
chr1	12272306	12272404	30480	0	+	0.387755	(0.36,0.39]	chr1	3951	8	INTRON	INTRON	VPS13D	ENSG00000048707.15	ENST00000620676.6:ENST00000613099.4	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.64834	4.70612	4.7639	0.0811309	0.0272056	0.177951	0.119337
chr1	77595053	77595153	515048	0	-	0.38	(0.36,0.39]	chr1	60797	100	INTRON	INTRON	ZZZ3	ENSG00000036549.13	ENST00000370801.8:ENST00000481346.5:ENST00000476275.5:ENST00000370798.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.64834	4.70612	4.7639	0.0811309	0.0272056	0.177951	0.119337
chr17	243231	243330	6820702	0	-	0.373737	(0.36,0.39]	chr17	689558	88	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000570893.5:ENST00000576001.5:ENST00000570954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.64834	4.70612	4.7639	0.0811309	0.0272056	0.177951	0.119337
chr7	94936207	94936307	3419071	0	+	0.38	(0.36,0.39]	chr7	330364	243	INTRON	INTRON	PPP1R9A	ENSG00000158528.12	ENST00000433360.6:ENST00000340694.8:ENST00000424654.5:ENST00000433881.5:ENST00000456331.6:ENST00000289495.7	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.64834	4.70612	4.7639	0.0811309	0.0272056	0.177951	0.119337
chr16	50568713	50568813	6451614	0	+	0.51	(0.485,0.523]	chr16	639902	101	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.581	4.70586	4.83072	0.085711	0.0148956	0.181766	0.0847741
chr16	85592327	85592427	6518996	0	+	0.51	(0.485,0.523]	chr16	646396	356	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.581	4.70586	4.83072	0.085711	0.0148956	0.181766	0.0847741
chr6	12078895	12078995	2854808	0	+	0.52	(0.485,0.523]	chr6	278961	398	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.581	4.70586	4.83072	0.085711	0.0148956	0.181766	0.0847741
chr8	140552825	140552924	4088785	0	-	0.50505	(0.485,0.523]	chr8	388568	10	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.581	4.70586	4.83072	0.085711	0.0148956	0.181766	0.0847741
chr15	45068468	45068561	6096694	0	+	0.505376	(0.485,0.523]	chr15	600192	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SORD	ENSG00000140263.15	ENST00000674405.1:ENST00000558789.5:ENST00000267814.14:ENST00000559230.5:ENST00000674368.1:ENST00000674387.1:ENST00000558580.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.65198	4.705685	4.75939	0.0783889	0.0172254	0.175203	0.0923809
chr8	127204213	127204312	4067049	0	-	0.353535	(0.33,0.36]	chr8	387456	6	INTRON	INTRON	CASC19	ENSG00000254166.3	ENST00000641912.1:ENST00000641991.1:ENST00000641425.1:ENST00000641496.1:ENST00000641013.1:ENST00000641174.1:ENST00000641487.1:ENST00000641321.1:ENST00000641719.1:ENST00000642010.1:ENST00000641056.1:ENST00000641642.1:ENST00000641362.1:ENST00000641365.1:ENST00000642077.1:ENST00000641179.1:ENST00000642126.1:ENST00000641411.1:ENST00000641298.1:ENST00000641001.1:ENST00000641674.2:ENST00000641828.1:ENST00000641029.1:ENST00000641547.1:ENST00000642134.1:ENST00000641696.1:ENST00000641480.1:ENST00000641187.1:ENST00000641934.1:ENST00000641681.1:ENST00000641867.1:ENST00000641418.1:ENST00000641414.2:ENST00000641733.1:ENST00000642142.1:ENST00000641964.1:ENST00000641880.1:ENST00000641171.1:ENST00000641625.1:ENST00000642118.2:ENST00000642018.2:ENST00000641309.2:ENST00000641704.2:ENST00000641106.2:ENST00000663628.1:ENST00000641153.2:ENST00000641218.2:ENST00000641488.2:ENST00000641786.1:ENST00000641523.2:ENST00000641060.1	lncRNA	lncRNA	lncRNA	lncRNA	2	120	2	3.27217	4.705575	6.13898	0.00953039	0.00571458	0.0658012	0.0467736
chr17	38208162	38208258	6894932	0	-	0.260417	[0,0.29]	chr17	700323	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	NPEPPSP1	ENSG00000274487.3	ENST00000649858.2:ENST00000685611.1:ENST00000692748.1:ENST00000685092.1:ENST00000620148.2:ENST00000685084.1:ENST00000690513.1:ENST00000684912.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	40	2	4.35679	4.70544	5.05409	0.0332741	0.0318802	0.133139	0.12158
chr16	31069258	31069357	6580090	0	-	0.545455	(0.523,0.58]	chr16	657784	42	INTRON	INTRON	ZNF668	ENSG00000167394.13	ENST00000300849.5:ENST00000538906.5:ENST00000394983.6:ENST00000414399.1:ENST00000417935.1:ENST00000564456.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.34118	4.705375	5.06957	0.0448011	0.0372357	0.140478	0.139793
chr1	44521824	44521924	113221	0	+	0.36	(0.33,0.36]	chr1	14018	1021	INTRON	INTRON	RNF220	ENSG00000187147.18	ENST00000355387.6:ENST00000361799.7:ENST00000372247.6	protein_coding	protein_coding	protein_coding	protein_coding	3	255	2	3.78009	4.704965	5.62984	0.00476141	0.00313405	0.0450109	0.0312116
chr14	89306018	89306118	6027161	0	-	0.43	(0.419,0.45]	chr14	591449	211	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.47684	4.70487	4.9329	0.0716557	0.0389508	0.168159	0.142578
chr17	29638476	29638574	6877803	0	-	0.438776	(0.419,0.45]	chr17	698177	13	INTRON	INTRON	SSH2	ENSG00000141298.19	ENST00000540801.6:ENST00000269033.7:ENST00000649863.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.47684	4.70487	4.9329	0.0716557	0.0389508	0.168159	0.142578
chr9	104909163	104909263	4362236	0	-	0.45	(0.419,0.45]	chr9	416432	50	INTRON	INTRON	ABCA1	ENSG00000165029.17	ENST00000374736.8:ENST00000678995.1:ENST00000423487.6:ENST00000374733.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.47684	4.70487	4.9329	0.0716557	0.0389508	0.168159	0.142578
chr12	64631202	64631302	5250572	0	+	0.53	(0.523,0.58]	chr12	511993	82	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.23973	4.70471	5.16969	0.0444247	0.0387762	0.153511	0.131324
chr18	74960181	74960281	7092885	0	+	0.57	(0.523,0.58]	chr18	722473	391	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.23973	4.70471	5.16969	0.0444247	0.0387762	0.153511	0.131324
chr5	69261508	69261606	2441450	0	+	0.530612	(0.523,0.58]	chr5	243329	12	INTRON	INTRON	CDK7	ENSG00000134058.12	ENST00000629350.2:ENST00000506563.5:ENST00000515391.5:ENST00000256443.8:ENST00000506789.5:ENST00000510106.5:ENST00000514676.5:ENST00000504147.5:ENST00000508726.5:ENST00000502604.5:ENST00000513629.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.23973	4.70471	5.16969	0.0444247	0.0387762	0.153511	0.131324
chr9	133733001	133733101	4427911	0	-	0.56	(0.523,0.58]	chr9	423126	4	SS3_PROX	SS3_PROX:INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000427237.6:ENST00000371867.5:ENST00000298628.6	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.23973	4.70471	5.16969	0.0444247	0.0387762	0.153511	0.131324
chr16	20706072	20706172	6416519	0	+	0.3	(0.29,0.33]	chr16	634386	240	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	124	2	3.77933	4.704585	5.62984	0.0174273	0.00133288	0.0901531	0.0173394
chr13	113614738	113614837	5659148	0	+	0.626263	(0.58,1]	chr13	555781	33	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	99	2	2.87471	4.704505	6.5343	0.0495478	8.82891e-5	0.146562	0.00248664
chr2	127496747	127496846	1266282	0	-	0.545455	(0.523,0.58]	chr2	136447	2	INTRON	INTRON	IWS1	ENSG00000163166.15	ENST00000295321.9	protein_coding	protein_coding	protein_coding	protein_coding	2	117	2	3.01186	4.704335	6.39681	0.00944557	0.00509616	0.0650078	0.0467496
chr11	95888461	95888561	5109519	0	-	0.42	(0.419,0.45]	chr11	496499	2	SS3_PROX	SS3_PROX:INTRON	MTMR2	ENSG00000087053.20	ENST00000675896.1:ENST00000346299.10:ENST00000675495.1:ENST00000676272.1:ENST00000675910.1:ENST00000393223.8:ENST00000676177.1:ENST00000675022.1:ENST00000675362.1:ENST00000674974.1:ENST00000675320.1:ENST00000675174.1:ENST00000674950.1:ENST00000674989.1:ENST00000675030.1:ENST00000676388.1:ENST00000675848.1:ENST00000675652.1:ENST00000676146.1:ENST00000675922.1:ENST00000676268.1:ENST00000675024.1:ENST00000675767.1:ENST00000676432.1:ENST00000676027.1:ENST00000675196.1:ENST00000675957.1:ENST00000675981.1:ENST00000674924.1:ENST00000676166.1:ENST00000676440.1:ENST00000675454.1:ENST00000674968.1:ENST00000676378.1:ENST00000675288.1:ENST00000675636.1:ENST00000675237.1:ENST00000674528.1:ENST00000675477.1:ENST00000674901.1:ENST00000675034.1:ENST00000676393.1:ENST00000675413.1:ENST00000675933.1:ENST00000675660.1:ENST00000674610.1:ENST00000409459.5:ENST00000352297.11:ENST00000675807.1:ENST00000675489.1:ENST00000676261.1:ENST00000481642.6:ENST00000495134.6:ENST00000484818.6:ENST00000470293.6:ENST00000497683.6:ENST00000444541.7:ENST00000470011.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.62273	4.70424	4.78575	0.103601	0.0224633	0.197541	0.108193
chr2	72423719	72423819	1184163	0	-	0.42	(0.419,0.45]	chr2	128669	435	INTRON	INTRON	EXOC6B	ENSG00000144036.16	ENST00000272427.11:ENST00000634650.1:ENST00000464347.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.62273	4.70424	4.78575	0.103601	0.0224633	0.197541	0.108193
chr7	72622713	72622812	3598798	0	-	0.444444	(0.419,0.45]	chr7	347144	55	INTRON	INTRON	TYW1B	ENSG00000277149.5	ENST00000612372.4:ENST00000620995.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.62273	4.70424	4.78575	0.103601	0.0224633	0.197541	0.108193
chr2	239277780	239277880	1391486	0	-	0.55	(0.523,0.58]	chr2	148740	262	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	145	2	3.04714	4.70414	6.36114	0.0234449	3.21725e-4	0.104248	0.0063695
chr11	115322139	115322239	5129307	0	-	0.42	(0.419,0.45]	chr11	498106	348	INTRON	INTRON	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000541434.5:ENST00000543249.1:ENST00000540951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	115	2	2.85295	4.7041	6.55525	0.0703179	3.84925e-4	0.168159	0.00726694
chr1	44238638	44238737	459557	0	-	0.565657	(0.523,0.58]	chr1	55299	59	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.50593	4.704075	4.90222	0.094303	0.0125132	0.188571	0.0765738
chr20	63898011	63898110	7509808	0	+	0.545455	(0.523,0.58]	chr20	783627	23	INTRON	INTRON	DNAJC5	ENSG00000101152.11	ENST00000360864.9:ENST00000470551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.50593	4.704075	4.90222	0.094303	0.0125132	0.188571	0.0765738
chr7	1009649	1009749	3526319	0	-	0.57	(0.523,0.58]	chr7	340567	3	SS5_PROX	SS5_PROX:INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.50593	4.704075	4.90222	0.094303	0.0125132	0.188571	0.0765738
chr1	112706577	112706631	563037	0	-	0.740741	(0.58,1]	chr1	64624	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RHOC	ENSG00000155366.17	ENST00000369633.6:ENST00000369642.7:ENST00000339083.12:ENST00000285735.6:ENST00000468093.5:ENST00000369638.6:ENST00000369637.5:ENST00000369636.6:ENST00000484280.6:ENST00000369632.6:ENST00000425265.6:ENST00000436685.6:ENST00000528831.5:ENST00000484054.3:ENST00000478447.1:ENST00000527563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.29454	4.704045	5.11355	0.0305531	0.0271806	0.126768	0.112113
chr10	79243838	79243938	4533800	0	+	0.69	(0.58,1]	chr10	432460	1	SS5_PROX	SS5_PROX:INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10:ENST00000472035.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.29454	4.704045	5.11355	0.0305531	0.0271806	0.126768	0.112113
chr11	70785951	70786051	5062141	0	-	0.61	(0.58,1]	chr11	492701	681	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.29454	4.704045	5.11355	0.0305531	0.0271806	0.126768	0.112113
chr17	55414332	55414432	6930476	0	-	0.41	(0.39,0.419]	chr17	706229	1	SS3_PROX	SS3_PROX:INTRON	MMD	ENSG00000108960.9	ENST00000262065.8:ENST00000649377.1:ENST00000571578.1	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	3.77224	4.704045	5.63585	0.025023	0.00517927	0.10758	0.043878
chr22	46615785	46615885	7744333	0	+	0.61	(0.58,1]	chr22	812034	381	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000447351.5:ENST00000431155.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.29454	4.704045	5.11355	0.0305531	0.0271806	0.126768	0.112113
chr9	129619814	129619913	4251029	0	+	0.616162	(0.58,1]	chr9	404743	103	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.29454	4.704045	5.11355	0.0305531	0.0271806	0.126768	0.112113
chr10	18565961	18566061	4642388	0	-	0.4	(0.39,0.419]	chr10	443321	136	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	112	2	3.44204	4.704	5.96596	0.0284392	0.00156652	0.114979	0.0194594
chr11	57315657	57315755	5038378	0	-	0.612245	(0.58,1]	chr11	488060	14	INTRON	INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.58025	4.70389	4.82753	0.0427798	0.0172566	0.13762	0.0923809
chr14	105216359	105216456	6058161	0	-	0.628866	(0.58,1]	chr14	594783	31	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000392557.8:ENST00000446501.6:ENST00000635152.1:ENST00000547374.5:ENST00000551787.5:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.58025	4.70389	4.82753	0.0427798	0.0172566	0.13762	0.0923809
chr16	29265215	29265315	6433489	0	+	0.6	(0.58,1]	chr16	636745	131	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.58025	4.70389	4.82753	0.0427798	0.0172566	0.13762	0.0923809
chr19	1999141	1999239	7307785	0	-	0.653061	(0.58,1]	chr19	753493	13	INTRON	INTRON	BTBD2	ENSG00000133243.10	ENST00000255608.9:ENST00000589200.3:ENST00000590646.5:ENST00000587742.5:ENST00000588395.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.58025	4.70389	4.82753	0.0427798	0.0172566	0.13762	0.0923809
chr19	4011634	4011732	7192338	0	+	0.612245	(0.58,1]	chr19	732461	35	INTRON	INTRON	PIAS4	ENSG00000105229.7	ENST00000262971.3:ENST00000599999.5:ENST00000600566.5:ENST00000593518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.58025	4.70389	4.82753	0.0427798	0.0172566	0.13762	0.0923809
chr3	50330380	50330480	1775227	0	-	0.62	(0.58,1]	chr3	184321	7	UTR3	UTR3:EXON_MRNA	RASSF1	ENSG00000068028.18	ENST00000327761.7:ENST00000616212.4:ENST00000482447.1:ENST00000357043.6:ENST00000395117.6:ENST00000359365.9:ENST00000395126.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.58025	4.70389	4.82753	0.0427798	0.0172566	0.13762	0.0923809
chr9	127548260	127548360	4411986	0	-	0.59	(0.58,1]	chr9	420485	161	INTRON	INTRON	NIBAN2	ENSG00000136830.12	ENST00000373314.7:ENST00000373312.4:ENST00000478917.1:ENST00000468379.1:ENST00000484348.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.58025	4.70389	4.82753	0.0427798	0.0172566	0.13762	0.0923809
chr9	133850100	133850200	4428899	0	-	0.59	(0.58,1]	chr9	423304	154	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.58025	4.70389	4.82753	0.0427798	0.0172566	0.13762	0.0923809
chrX	2228926	2229026	7966127	0	-	0.62	(0.58,1]	chrX	834328	73	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.58025	4.70389	4.82753	0.0427798	0.0172566	0.13762	0.0923809
chr1	8684787	8684887	394402	0	-	0.4	(0.39,0.419]	chr1	45065	280	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000468247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	333	2	4.56153	4.70361	4.84569	0.00253521	1.92362e-4	0.0317786	0.00439784
chr4	3367385	3367484	2005110	0	+	0.656566	(0.58,1]	chr4	204663	240	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	96	2	3.06331	4.70359	6.34387	0.036259	1.61506e-4	0.127941	0.00387712
chr11	65534536	65534631	4872117	0	+	0.526316	(0.523,0.58]	chr11	468235	14	INTRON	INTRON	SCYL1	ENSG00000142186.18	ENST00000525364.5:ENST00000270176.10:ENST00000420247.6:ENST00000533862.5:ENST00000524944.5:ENST00000527009.5:ENST00000531601.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.68785	4.7035350000000005	4.71922	0.0721601	0.0194172	0.168159	0.0994526
chr16	81618488	81618587	6509481	0	+	0.575758	(0.523,0.58]	chr16	645921	76	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.68785	4.7035350000000005	4.71922	0.0721601	0.0194172	0.168159	0.0994526
chr1	183477489	183477589	301182	0	+	0.31	(0.29,0.33]	chr1	34243	32	INTRON	INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.51301	4.70321	4.89341	0.0885563	0.0135896	0.183874	0.0811697
chr17	29773208	29773308	6879169	0	-	0.32	(0.29,0.33]	chr17	698253	119	INTRON	INTRON	SSH2	ENSG00000141298.19	ENST00000540801.6:ENST00000269033.7:ENST00000394848.5:ENST00000579040.5:ENST00000577483.1:ENST00000592397.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.51301	4.70321	4.89341	0.0885563	0.0135896	0.183874	0.0811697
chr6	131717472	131717572	3007708	0	+	0.33	(0.29,0.33]	chr6	294103	235	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000414305.5:ENST00000357639.8:ENST00000358229.6	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.51301	4.70321	4.89341	0.0885563	0.0135896	0.183874	0.0811697
chr12	51248411	51248509	5429184	0	-	0.489796	(0.485,0.523]	chr12	532877	12	INTRON	INTRON	SMAGP	ENSG00000170545.17	ENST00000603798.6:ENST00000398453.7:ENST00000380103.4:ENST00000603864.5:ENST00000605627.1:ENST00000605426.5:ENST00000603838.5:ENST00000604188.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.23628	4.7032	5.17012	0.045492200000000003	0.038581	0.154539	0.131324
chr15	55836037	55836133	6272302	0	-	0.520833	(0.485,0.523]	chr15	618219	14	INTRON	INTRON	NEDD4	ENSG00000069869.17	ENST00000435532.8:ENST00000338963.6:ENST00000508342.5:ENST00000503468.5:ENST00000508871.5:ENST00000648451.1:ENST00000506154.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.23628	4.7032	5.17012	0.045492200000000003	0.038581	0.154539	0.131324
chr16	85331269	85331369	6516382	0	+	0.49	(0.485,0.523]	chr16	646381	222	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.23628	4.7032	5.17012	0.045492200000000003	0.038581	0.154539	0.131324
chr2	47502659	47502759	790070	0	+	0.51	(0.485,0.523]	chr2	90266	196	INTRON	INTRON	MSH2	ENSG00000095002.15	ENST00000644092.1:ENST00000645339.1:ENST00000646415.1:ENST00000645506.1:ENST00000406134.5:ENST00000644900.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.23628	4.7032	5.17012	0.045492200000000003	0.038581	0.154539	0.131324
chr3	10192885	10192984	1406807	0	+	0.50505	(0.485,0.523]	chr3	151140	145	INTRON	INTRON	IRAK2	ENSG00000134070.5	ENST00000256458.5	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.23628	4.7032	5.17012	0.045492200000000003	0.038581	0.154539	0.131324
chr6	26877522	26877621	3112309	0	-	0.494949	(0.485,0.523]	chr6	301874	49	INTRON	INTRON	GUSBP2	ENSG00000241549.8	ENST00000479900.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	89	2	3.30597	4.703005	6.10004	0.012958	0.00860355	0.0778899	0.0623467
chr1	30934342	30934442	434617	0	-	0.47	(0.45,0.485]	chr1	51446	6	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000530669.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.50852	4.702685	4.89685	0.0614781	0.0302873	0.158506	0.126768
chr13	50456304	50456404	5597179	0	+	0.48	(0.45,0.485]	chr13	551641	224	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000485007.5:ENST00000475913.5:ENST00000470726.7:ENST00000479420.5:ENST00000474630.6:ENST00000491482.5:ENST00000647700.1:ENST00000484869.6:ENST00000469095.6:ENST00000462427.2:ENST00000470593.5:ENST00000472136.5:ENST00000498557.5:ENST00000460525.6	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.50852	4.702685	4.89685	0.0614781	0.0302873	0.158506	0.126768
chr17	78714529	78714629	6978635	0	-	0.48	(0.45,0.485]	chr17	712607	44	INTRON	INTRON	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000589297.5:ENST00000585509.5:ENST00000591574.5:ENST00000590775.5:ENST00000589768.5:ENST00000586043.5:ENST00000587308.5:ENST00000590300.1:ENST00000591095.1:ENST00000592497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.50852	4.702685	4.89685	0.0614781	0.0302873	0.158506	0.126768
chr20	34567345	34567444	7547101	0	-	0.474747	(0.45,0.485]	chr20	787854	60	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.50852	4.702685	4.89685	0.0614781	0.0302873	0.158506	0.126768
chr3	32028893	32028993	1730886	0	-	0.47	(0.45,0.485]	chr3	179070	477	INTRON	INTRON	OSBPL10	ENSG00000144645.15	ENST00000479173.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	40	2	4.50852	4.702685	4.89685	0.0614781	0.0302873	0.158506	0.126768
chr7	34663926	34664026	3572264	0	-	0.46	(0.45,0.485]	chr7	344517	202	INTRON	INTRON	NPSR1-AS1	ENSG00000197085.11	ENST00000419766.5:ENST00000539747.5:ENST00000439852.5:ENST00000358772.8:ENST00000431669.5	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.50852	4.702685	4.89685	0.0614781	0.0302873	0.158506	0.126768
chr5	180573195	180573292	2606405	0	+	0.546392	(0.523,0.58]	chr5	259158	14	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4	protein_coding	protein_coding	protein_coding	protein_coding	3	140	2	2.7796	4.7026	6.6256	0.00988091	0.00333843	0.0664239	0.0368376
chr1	7498500	7498600	15595	0	+	0.42	(0.419,0.45]	chr1	1895	302	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12	protein_coding	protein_coding	protein_coding	protein_coding	0	45	2	4.08324	4.7025950000000005	5.32195	0.0727147	0.0431627	0.199502	0.138403
chr11	43397873	43397973	4844076	0	+	0.45	(0.419,0.45]	chr11	463359	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TTC17	ENSG00000052841.15	ENST00000039989.9:ENST00000299240.10:ENST00000526774.5:ENST00000524936.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	45	2	4.08324	4.7025950000000005	5.32195	0.0727147	0.0431627	0.199502	0.138403
chr22	48697762	48697861	7751245	0	+	0.434343	(0.419,0.45]	chr22	812283	40	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	45	2	4.08324	4.7025950000000005	5.32195	0.0727147	0.0431627	0.199502	0.138403
chr1	167760466	167760566	266811	0	+	0.51	(0.485,0.523]	chr1	31382	379	INTRON	INTRON	MPZL1	ENSG00000197965.12	ENST00000464954.1:ENST00000359523.7:ENST00000448405.5:ENST00000392121.7:ENST00000465787.5:ENST00000474859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.50634	4.70252	4.8987	0.0939553	0.0129327	0.188571	0.0778105
chr22	46850275	46850375	7745891	0	+	0.49	(0.485,0.523]	chr22	812199	523	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.50634	4.70252	4.8987	0.0939553	0.0129327	0.188571	0.0778105
chr7	152838972	152839071	3518326	0	+	0.50505	(0.485,0.523]	chr7	339750	135	INTRON	INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2:ENST00000479402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.50634	4.70252	4.8987	0.0939553	0.0129327	0.188571	0.0778105
chr11	70803820	70803920	5062321	0	-	0.43	(0.419,0.45]	chr11	492707	49	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5:ENST00000460048.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.69033	4.702415	4.7145	0.0958674	0.0256236	0.189038	0.115966
chr13	33206205	33206305	5684659	0	-	0.45	(0.419,0.45]	chr13	558196	3	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.69033	4.702415	4.7145	0.0958674	0.0256236	0.189038	0.115966
chr14	101886525	101886623	5914672	0	+	0.428571	(0.419,0.45]	chr14	578258	26	INTRON	INTRON	PPP2R5C	ENSG00000078304.20	ENST00000694906.1:ENST00000422945.6:ENST00000328724.9:ENST00000350249.7:ENST00000557621.5:ENST00000334743.9:ENST00000445439.7:ENST00000557095.5:ENST00000554137.5:ENST00000556218.5:ENST00000557534.1:ENST00000557716.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.69033	4.702415	4.7145	0.0958674	0.0256236	0.189038	0.115966
chr2	156197583	156197683	1286805	0	-	0.43	(0.419,0.45]	chr2	138345	466	INTRON	INTRON	LINC01876	ENSG00000226383.7	ENST00000635799.1:ENST00000662073.1:ENST00000659502.1:ENST00000428651.2:ENST00000661513.1:ENST00000657334.1:ENST00000638047.1:ENST00000637554.1:ENST00000636956.1:ENST00000637665.1:ENST00000637476.1:ENST00000637324.1	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.69033	4.702415	4.7145	0.0958674	0.0256236	0.189038	0.115966
chr7	105936275	105936375	3444124	0	+	0.42	(0.419,0.45]	chr7	333440	122	INTRON	INTRON	CDHR3	ENSG00000128536.16	ENST00000470188.5:ENST00000488386.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	40	2	4.69033	4.702415	4.7145	0.0958674	0.0256236	0.189038	0.115966
chr9	112715161	112715261	4372572	0	-	0.43	(0.419,0.45]	chr9	417789	129	INTRON	INTRON	INIP	ENSG00000148153.14	ENST00000374242.9:ENST00000497712.6:ENST00000374236.5:ENST00000481146.6:ENST00000374234.1:ENST00000476599.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.69033	4.702415	4.7145	0.0958674	0.0256236	0.189038	0.115966
chr17	66349946	66350046	6783904	0	+	0.49	(0.485,0.523]	chr17	684230	100	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.68434	4.70199	4.71964	0.0718646	0.0200045	0.168159	0.100864
chr20	35010788	35010883	7550435	0	-	0.494737	(0.485,0.523]	chr20	788282	1	INTRON	INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.68434	4.70199	4.71964	0.0718646	0.0200045	0.168159	0.100864
chr7	112204101	112204201	3692549	0	-	0.5	(0.485,0.523]	chr7	354969	1996	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.68434	4.70199	4.71964	0.0718646	0.0200045	0.168159	0.100864
chr7	23455181	23455281	3553056	0	-	0.54	(0.523,0.58]	chr7	343233	240	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	116	2	3.0699	4.70168	6.33346	0.00819703	0.00571732	0.0591729	0.0498083
chr1	1219005	1219102	380376	0	-	0.659794	(0.58,1]	chr1	42840	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000494748.1:ENST00000478938.1:ENST00000403997.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	80	2	3.9245	4.701445	5.47839	0.0145198	0.00209574	0.0823104	0.0238576
chr5	60493590	60493689	2679094	0	-	0.383838	(0.36,0.39]	chr5	264441	56	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000506510.6	protein_coding	retained_intron	protein_coding	retained_intron	0	42	2	4.30212	4.7012599999999996	5.1004	0.0526991	0.0494303	0.160725	0.14912
chr10	75493596	75493696	4521094	0	+	0.48	(0.45,0.485]	chr10	432249	420	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	3.82378	4.70116	5.57854	0.0230065	0.0039984	0.102982	0.0370532
chr17	72560916	72561016	6963920	0	-	0.56	(0.523,0.58]	chr17	710389	265	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	4	161	2	3.09054	4.701124999999999	6.31171	0.00594629	0.00310263	0.0506158	0.0311614
chr1	26542319	26542418	68080	0	+	0.59596	(0.58,1]	chr1	7507	50	INTRON	INTRON	RPS6KA1	ENSG00000117676.14	ENST00000374168.7:ENST00000526040.6:ENST00000525525.5:ENST00000524436.5:ENST00000374166.8:ENST00000526792.5:ENST00000529454.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.3962	4.701025	5.00585	0.0323732	0.0250928	0.121593	0.114418
chr12	52052147	52052222	5233989	0	+	0.586667	(0.58,1]	chr12	508233	2	SS3_PROX	SS3_PROX:INTRON	NR4A1	ENSG00000123358.20	ENST00000360284.7:ENST00000548977.5:ENST00000546842.5:ENST00000545748.5:ENST00000550082.5:ENST00000549102.1:ENST00000478250.1:ENST00000547206.5:ENST00000243050.5:ENST00000394824.2:ENST00000394825.6:ENST00000550763.1:ENST00000548232.1:ENST00000562373.1:ENST00000548733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.3962	4.701025	5.00585	0.0323732	0.0250928	0.121593	0.114418
chr19	17146983	17147082	7218916	0	+	0.59596	(0.58,1]	chr19	737731	11	INTRON	INTRON	MYO9B	ENSG00000099331.14	ENST00000682292.1:ENST00000595618.5:ENST00000594824.5:ENST00000397274.6:ENST00000595641.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.3962	4.701025	5.00585	0.0323732	0.0250928	0.121593	0.114418
chr20	36861958	36862057	7557121	0	-	0.59596	(0.58,1]	chr20	789159	22	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.3962	4.701025	5.00585	0.0323732	0.0250928	0.121593	0.114418
chr22	50675251	50675351	7754916	0	+	0.68	(0.58,1]	chr22	812693	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.3962	4.701025	5.00585	0.0323732	0.0250928	0.121593	0.114418
chr2	239277380	239277480	1391482	0	-	0.62	(0.58,1]	chr2	148740	258	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	80	2	3.56821	4.70098	5.83375	0.00751249	0.00550024	0.0576451	0.0454065
chr6	7573685	7573785	2840186	0	+	0.44	(0.419,0.45]	chr6	278168	2	SS3_PROX	SS3_PROX:INTRON	DSP	ENSG00000096696.15	ENST00000418664.2:ENST00000379802.8:ENST00000684395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	128	2	2.80607	4.70097	6.59587	0.0182888	0.00611222	0.0958973	0.0517172
chr13	112973540	112973639	5655356	0	+	0.626263	(0.58,1]	chr13	555120	37	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.18518	4.699475	5.21377	0.0374658	0.0230012	0.139793	0.102982
chr16	85229365	85229465	6515362	0	+	0.68	(0.58,1]	chr16	646377	16	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	41	2	4.18518	4.699475	5.21377	0.0374658	0.0230012	0.139793	0.102982
chr16	85379540	85379640	6516866	0	+	0.59	(0.58,1]	chr16	646391	202	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.18518	4.699475	5.21377	0.0374658	0.0230012	0.139793	0.102982
chr16	85515283	85515383	6518224	0	+	0.72	(0.58,1]	chr16	646391	1560	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.18518	4.699475	5.21377	0.0374658	0.0230012	0.139793	0.102982
chr20	32476924	32477023	7543637	0	-	0.646465	(0.58,1]	chr20	787372	18	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.18518	4.699475	5.21377	0.0374658	0.0230012	0.139793	0.102982
chr4	3368083	3368182	2005117	0	+	0.666667	(0.58,1]	chr4	204663	247	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	106	2	3.2803	4.699475	6.11865	0.00429384	0.00374905	0.042386	0.0352817
chr3	71413759	71413859	1829586	0	-	0.36	(0.33,0.36]	chr3	188242	531	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000649145.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	89	2	3.75183	4.699425	5.64702	0.0212683	0.00511828	0.0996805	0.0434952
chr10	44969364	44969464	4483222	0	+	0.49	(0.485,0.523]	chr10	428600	91	INTRON	INTRON	RASSF4	ENSG00000107551.21	ENST00000489171.5:ENST00000340258.10:ENST00000427758.5:ENST00000483709.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	105	2	3.4264	4.699305	5.97221	0.025039	9.86421e-4	0.10758	0.0140716
chr19	33806067	33806165	7241205	0	+	0.55102	(0.523,0.58]	chr19	741479	44	INTRON	INTRON	KCTD15	ENSG00000153885.15	ENST00000587658.5:ENST00000587559.5:ENST00000588637.5:ENST00000284006.10:ENST00000589786.5:ENST00000683859.1:ENST00000588881.5:ENST00000430256.3	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	3.84801	4.699065	5.55012	0.0217068	0.00343547	0.100615	0.0333396
chr1	17679180	17679280	55003	0	+	0.56	(0.523,0.58]	chr1	5603	142	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.43597	4.69897	4.96197	0.0521137	0.0313935	0.148503	0.127822
chr1	248851347	248851447	709805	0	-	0.58	(0.523,0.58]	chr1	83006	4	SS3_PROX	SS3_PROX:INTRON	ZNF692	ENSG00000171163.16	ENST00000463519.5:ENST00000306601.9:ENST00000366471.7:ENST00000533927.5:ENST00000476503.5:ENST00000477070.6:ENST00000412341.6:ENST00000482023.5:ENST00000451251.5:ENST00000470787.6:ENST00000462037.6:ENST00000474351.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.43597	4.69897	4.96197	0.0521137	0.0313935	0.148503	0.127822
chr19	41376968	41377046	7263505	0	+	0.538462	(0.523,0.58]	chr19	745094	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	TMEM91	ENSG00000142046.15	ENST00000539627.5:ENST00000604123.5:ENST00000413014.6:ENST00000392002.7:ENST00000436170.6:ENST00000447302.6:ENST00000544232.5:ENST00000542945.5:ENST00000537354.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.43597	4.69897	4.96197	0.0521137	0.0313935	0.148503	0.127822
chr20	25464520	25464619	7539586	0	-	0.575758	(0.523,0.58]	chr20	786966	16	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5:ENST00000336104.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.43597	4.69897	4.96197	0.0521137	0.0313935	0.148503	0.127822
chr19	7906134	7906227	7199664	0	+	0.623656	(0.58,1]	chr19	734083	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MAP2K7	ENSG00000076984.18	ENST00000397981.7:ENST00000397979.4:ENST00000468058.1:ENST00000397983.7:ENST00000475022.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	95	2	3.13234	4.6988900000000005	6.26544	0.0322188	2.06156e-4	0.121593	0.00461335
chr16	85227666	85227766	6515345	0	+	0.63	(0.58,1]	chr16	646376	3	SS5_PROX	SS5_PROX:INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	93	2	2.91493	4.69864	6.48235	0.0259506	0.00202884	0.116361	0.0283135
chr12	46783329	46783429	5221028	0	+	0.33	(0.29,0.33]	chr12	506670	1309	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.42727	4.698205	4.96914	0.0481918	0.0335282	0.144601	0.133139
chr3	119522705	119522805	1541349	0	+	0.31	(0.29,0.33]	chr3	163598	50	INTRON	INTRON	TIMMDC1	ENSG00000113845.10	ENST00000494664.6:ENST00000493694.1:ENST00000264244.7:ENST00000492164.5:ENST00000463927.6:ENST00000498399.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.42727	4.698205	4.96914	0.0481918	0.0335282	0.144601	0.133139
chr16	85442613	85442713	6517497	0	+	0.62	(0.58,1]	chr16	646391	833	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	3.20215	4.698175	6.1942	0.0136092	0.00368616	0.0811697	0.0389784
chr7	47394000	47394100	3587732	0	-	0.51	(0.485,0.523]	chr7	346036	240	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	87	2	3.4289	4.698035	5.96717	0.0108319	0.00977282	0.0707085	0.0664239
chr12	89521645	89521743	5469557	0	-	0.397959	(0.39,0.419]	chr12	537728	24	UTR3	UTR3:EXON_MRNA:INTRON	POC1B:GALNT4	ENSG00000139323.14:ENSG00000257594.4	ENST00000313546.8:ENST00000393179.8:ENST00000549035.1:ENST00000547496.5:ENST00000548715.5:ENST00000549504.1:ENST00000539190.6:ENST00000552563.1:ENST00000547274.5:ENST00000546830.1:ENST00000529983.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	93	2	3.98343	4.697985	5.41254	0.0347088	0.00309726	0.12648	0.0311614
chr20	38427129	38427218	7561097	0	-	0.449438	(0.419,0.45]	chr20	789769	8	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000671309.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	419	2	4.69619	4.6976949999999995	4.6992	0.00370929	7.35903e-5	0.039096	0.00218322
chr15	58794296	58794395	6118673	0	+	0.383838	(0.36,0.39]	chr15	602067	60	INTRON	INTRON	MINDY2	ENSG00000128923.11	ENST00000316848.9:ENST00000560289.5:ENST00000559228.6:ENST00000450403.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.56926	4.69749	4.82572	0.0751666	0.031369	0.172839	0.127822
chr2	202448815	202448915	994940	0	+	0.38	(0.36,0.39]	chr2	109280	709	INTRON	INTRON	BMPR2	ENSG00000204217.16	ENST00000374580.10:ENST00000374574.2	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.56926	4.69749	4.82572	0.0751666	0.031369	0.172839	0.127822
chr11	70720601	70720700	5061487	0	-	0.494949	(0.485,0.523]	chr11	492701	27	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.43249	4.69744	4.96239	0.0518747	0.0322299	0.148503	0.12988
chr2	74040188	74040288	834401	0	+	0.5	(0.485,0.523]	chr2	94249	367	INTRON	INTRON	TET3	ENSG00000187605.16	ENST00000409262.8:ENST00000305799.8	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.43249	4.69744	4.96239	0.0518747	0.0322299	0.148503	0.12988
chr2	175607870	175607970	959425	0	+	0.52	(0.485,0.523]	chr2	105443	129	INTRON	INTRON	ENSG00000289349	ENSG00000289349.1	ENST00000692740.1:ENST00000685522.1	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.43249	4.69744	4.96239	0.0518747	0.0322299	0.148503	0.12988
chr2	239369903	239370003	1392411	0	-	0.51	(0.485,0.523]	chr2	148759	166	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.43249	4.69744	4.96239	0.0518747	0.0322299	0.148503	0.12988
chr22	20790192	20790292	7767834	0	-	0.49	(0.485,0.523]	chr22	814548	241	INTRON	INTRON	PI4KA	ENSG00000241973.11	ENST00000255882.11:ENST00000466162.5:ENST00000484220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	40	2	4.43249	4.69744	4.96239	0.0518747	0.0322299	0.148503	0.12988
chr22	48697961	48698060	7751247	0	+	0.494949	(0.485,0.523]	chr22	812283	42	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.43249	4.69744	4.96239	0.0518747	0.0322299	0.148503	0.12988
chr5	59224214	59224314	2666371	0	-	0.49	(0.485,0.523]	chr5	264329	75	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000636120.1:ENST00000507116.5:ENST00000360047.9:ENST00000503258.5:ENST00000405755.6:ENST00000502484.6:ENST00000309641.10:ENST00000505453.1:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.43249	4.69744	4.96239	0.0518747	0.0322299	0.148503	0.12988
chr13	75391790	75391890	5727102	0	-	0.57	(0.523,0.58]	chr13	561722	146	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	2	123	2	2.71726	4.697405	6.67755	0.0188054	0.00302793	0.0980631	0.0350226
chr8	30545065	30545163	3789781	0	+	0.418367	(0.39,0.419]	chr8	364946	4	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBPMS	ENSG00000157110.16	ENST00000320203.8:ENST00000339877.8:ENST00000287771.9:ENST00000397323.9:ENST00000517860.5:ENST00000520161.5:ENST00000519647.5:ENST00000520191.5:ENST00000519359.5:ENST00000522694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	93	2	3.26675	4.69725	6.12775	0.01622	0.0115883	0.0902823	0.0731017
chr3	131005928	131006027	1570234	0	+	0.444444	(0.419,0.45]	chr3	166230	29	INTRON	INTRON	ATP2C1	ENSG00000017260.20	ENST00000504381.5:ENST00000507488.6:ENST00000533801.6:ENST00000513801.5:ENST00000328560.12:ENST00000422190.6:ENST00000359644.7:ENST00000504612.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.63955	4.6972249999999995	4.7549	0.0888907	0.0293406	0.183874	0.125102
chr4	163161820	163161920	2359408	0	-	0.43	(0.419,0.45]	chr4	235717	31	INTRON	INTRON	NAF1	ENSG00000145414.9	ENST00000422287.6:ENST00000274054.3:ENST00000509232.5:ENST00000502973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.63955	4.6972249999999995	4.7549	0.0888907	0.0293406	0.183874	0.125102
chr7	105935775	105935875	3444119	0	+	0.44	(0.419,0.45]	chr7	333440	117	INTRON	INTRON	CDHR3	ENSG00000128536.16	ENST00000470188.5:ENST00000488386.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	40	2	4.63955	4.6972249999999995	4.7549	0.0888907	0.0293406	0.183874	0.125102
chrX	155089351	155089451	7963251	0	+	0.42	(0.419,0.45]	chrX	833938	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	BRCC3	ENSG00000185515.16	ENST00000340647.8:ENST00000369459.6:ENST00000369462.5:ENST00000330045.12:ENST00000411985.5:ENST00000453705.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.63955	4.6972249999999995	4.7549	0.0888907	0.0293406	0.183874	0.125102
chr2	25744976	25745074	1109110	0	-	0.479592	(0.45,0.485]	chr2	120954	1	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000404843.5:ENST00000673455.1:ENST00000672666.1	protein_coding	protein_coding	protein_coding	protein_coding	3	322	2	4.09039	4.6970849999999995	5.30378	0.00380149	6.27673e-5	0.0397531	0.0019321
chr1	17668791	17668891	54899	0	+	0.54	(0.523,0.58]	chr1	5603	38	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.13061	4.6969650000000005	5.26332	0.0533354	0.0337698	0.167062	0.124319
chr11	70783453	70783552	5062116	0	-	0.555556	(0.523,0.58]	chr11	492701	656	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.13061	4.6969650000000005	5.26332	0.0533354	0.0337698	0.167062	0.124319
chr21	37095049	37095149	7617641	0	+	0.56	(0.523,0.58]	chr21	795730	3	SS3_PROX	SS3_PROX:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5:ENST00000460328.5:ENST00000491952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	43	2	4.13061	4.6969650000000005	5.26332	0.0533354	0.0337698	0.167062	0.124319
chr9	134330252	134330352	4260725	0	+	0.53	(0.523,0.58]	chr9	406311	32	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.13061	4.6969650000000005	5.26332	0.0533354	0.0337698	0.167062	0.124319
chr16	14091023	14091123	6399591	0	+	0.48	(0.45,0.485]	chr16	632159	113	INTRON	INTRON	MRTFB	ENSG00000186260.17	ENST00000571589.6:ENST00000574998.5:ENST00000572400.5:ENST00000574045.5:ENST00000575537.5:ENST00000318282.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	106	2	3.14934	4.69678	6.24422	0.0410767	5.58345e-4	0.136301	0.00944382
chr15	60542011	60542110	6284939	0	-	0.373737	(0.36,0.39]	chr15	619503	98	INTRON	INTRON	RORA	ENSG00000069667.16	ENST00000335670.11:ENST00000261523.9:ENST00000309157.8:ENST00000449337.6:ENST00000551975.5:ENST00000560004.5:ENST00000559343.1:ENST00000558234.1:ENST00000557822.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.39677	4.696745	4.99672	0.0604395	0.0422707	0.158506	0.149195
chr17	31263048	31263147	6716540	0	+	0.373737	(0.36,0.39]	chr17	674598	8	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000456735.6:ENST00000493220.5:ENST00000687863.1:ENST00000696140.1:ENST00000696141.1:ENST00000581113.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	41	2	4.39677	4.696745	4.99672	0.0604395	0.0422707	0.158506	0.149195
chr2	240623892	240623992	1075182	0	+	0.72	(0.58,1]	chr2	116654	45	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	2	208	2	4.5743	4.6967300000000005	4.81916	0.00107349	3.00208e-4	0.0197319	0.00607383
chr9	124491328	124491428	4402636	0	-	0.71	(0.58,1]	chr9	419810	1	SS3_PROX	SS3_PROX:INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	3.95573	4.696625	5.43752	0.0156166	0.00191878	0.0849828	0.0223755
chr14	89326114	89326214	6027362	0	-	0.53	(0.523,0.58]	chr14	591449	412	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.60868	4.69626	4.78384	0.0663135	0.0226775	0.162385	0.108193
chr6	5172520	5172620	3089431	0	-	0.56	(0.523,0.58]	chr6	300021	279	INTRON	INTRON	LYRM4	ENSG00000214113.11	ENST00000330636.9:ENST00000468929.5:ENST00000464010.5:ENST00000463032.5:ENST00000480566.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.60868	4.69626	4.78384	0.0663135	0.0226775	0.162385	0.108193
chr11	85968836	85968935	5103474	0	-	0.272727	[0,0.29]	chr11	495700	77	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000530692.5:ENST00000526548.3:ENST00000630913.2:ENST00000529760.5:ENST00000528398.5:ENST00000532603.5:ENST00000356360.9:ENST00000529016.5:ENST00000526961.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.68855	4.69609	4.70363	0.0554735	0.0169854	0.154188	0.0923809
chr4	10100923	10101022	2195659	0	-	0.626263	(0.58,1]	chr4	222412	14	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	80	2	3.52722	4.696065	5.86491	0.00707578	0.00611467	0.0558168	0.0489549
chr11	70742584	70742684	5061707	0	-	0.59	(0.58,1]	chr11	492701	247	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	86	2	3.1491	4.695774999999999	6.24245	0.0154006	0.00334087	0.0869771	0.0368376
chr10	38367126	38367226	4481368	0	+	0.39	(0.36,0.39]	chr10	428351	11	INTRON	INTRON	HSD17B7P2	ENSG00000099251.14	ENST00000494540.5:ENST00000471365.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	134	2	4.1264	4.695740000000001	5.26508	0.00907014	0.00795848	0.063783	0.0578938
chr12	132535456	132535556	5352970	0	+	0.66	(0.58,1]	chr12	523670	71	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	2	199	2	4.5431	4.695735	4.84837	0.00197916	1.2454e-4	0.0279351	0.00322977
chr10	59862487	59862587	4694398	0	-	0.31	(0.29,0.33]	chr10	447429	94	INTRON	INTRON	CCDC6	ENSG00000108091.11	ENST00000263102.7	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.59993	4.69546	4.79099	0.061706	0.0243639	0.158854	0.113231
chr16	85452209	85452309	6517593	0	+	0.5	(0.485,0.523]	chr16	646391	929	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.12717	4.69546	5.26375	0.0545434	0.0335928	0.167824	0.124319
chr19	23325172	23325272	7358035	0	-	0.51	(0.485,0.523]	chr19	762771	147	INTRON	INTRON	ZNF91	ENSG00000167232.14	ENST00000596528.1:ENST00000596989.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	43	2	4.12717	4.69546	5.26375	0.0545434	0.0335928	0.167824	0.124319
chr8	96665300	96665400	3870128	0	+	0.33	(0.29,0.33]	chr8	371341	56	INTRON	INTRON	CPQ	ENSG00000104324.16	ENST00000220763.10:ENST00000519900.1:ENST00000517742.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.59993	4.69546	4.79099	0.061706	0.0243639	0.158854	0.113231
chr5	1326348	1326436	2609078	0	-	0.511364	(0.485,0.523]	chr5	259718	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000507195.5:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	318	2	4.29191	4.6952	5.09849	0.00537132	2.35312e-5	0.0481897	9.46353e-4
chr1	10535712	10535799	26706	0	+	0.471264	(0.45,0.485]	chr1	3155	1	SS3_PROX	SS3_PROX:INTRON	PEX14	ENSG00000142655.13	ENST00000472851.1:ENST00000356607.9:ENST00000491661.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.5725	4.69511	4.81772	0.0926859	0.0167663	0.188571	0.0917029
chr10	74342639	74342739	4513602	0	+	0.46	(0.45,0.485]	chr10	431944	30	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.5725	4.69511	4.81772	0.0926859	0.0167663	0.188571	0.0917029
chr11	46419844	46419944	5031080	0	-	0.47	(0.45,0.485]	chr11	486630	14	INTRON	INTRON	AMBRA1	ENSG00000110497.15	ENST00000683756.1:ENST00000534300.5:ENST00000533727.5:ENST00000314845.7:ENST00000458649.6:ENST00000528950.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.5725	4.69511	4.81772	0.0926859	0.0167663	0.188571	0.0917029
chr16	89439713	89439813	6661231	0	-	0.47	(0.45,0.485]	chr16	666753	80	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.5725	4.69511	4.81772	0.0926859	0.0167663	0.188571	0.0917029
chr20	62047804	62047904	7583626	0	-	0.47	(0.45,0.485]	chr20	792369	327	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000252996.9:ENST00000608887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.5725	4.69511	4.81772	0.0926859	0.0167663	0.188571	0.0917029
chr5	172913866	172913965	2591226	0	+	0.474747	(0.45,0.485]	chr5	257100	35	INTRON	INTRON	ERGIC1	ENSG00000113719.17	ENST00000393784.8:ENST00000690799.1:ENST00000686615.1:ENST00000684928.1:ENST00000691612.1:ENST00000687901.1:ENST00000689975.1:ENST00000326654.7:ENST00000693299.1:ENST00000687702.1:ENST00000685391.1:ENST00000520326.6:ENST00000520642.5:ENST00000686955.1:ENST00000523291.5:ENST00000692557.1:ENST00000686449.1:ENST00000693572.1:ENST00000518247.5:ENST00000690977.1:ENST00000519567.5:ENST00000519796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	97	2	2.98123	4.69511	6.40899	0.0270875	0.00574958	0.119337	0.0499659
chr6	41520390	41520490	3131932	0	-	0.48	(0.45,0.485]	chr6	305424	251	INTRON	INTRON	FOXP4-AS1	ENSG00000234753.6	ENST00000691406.1:ENST00000440194.1	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.5725	4.69511	4.81772	0.0926859	0.0167663	0.188571	0.0917029
chr11	90672600	90672700	4918169	0	+	0.46	(0.45,0.485]	chr11	474339	693	INTRON	INTRON	DISC1FP1	ENSG00000261645.7	ENST00000649150.1:ENST00000562245.5:ENST00000561596.5:ENST00000562678.5:ENST00000563681.1:ENST00000670926.1	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.64346	4.694935	4.74641	0.0850039	0.0193126	0.181766	0.0994526
chr3	4227045	4227145	1675421	0	-	0.46	(0.45,0.485]	chr3	175311	1579	INTRON	INTRON	SUMF1	ENSG00000144455.14	ENST00000448413.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	39	2	4.64346	4.694935	4.74641	0.0850039	0.0193126	0.181766	0.0994526
chr6	32974920	32975020	2897720	0	+	0.47	(0.45,0.485]	chr6	283730	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRD2	ENSG00000204256.14	ENST00000374825.9:ENST00000469132.2:ENST00000679179.1:ENST00000678778.1:ENST00000449085.4:ENST00000677331.1:ENST00000456339.5:ENST00000678250.1:ENST00000677085.1:ENST00000374831.8:ENST00000495733.5:ENST00000482914.5:ENST00000679099.1:ENST00000464592.6:ENST00000607833.5:ENST00000395287.5:ENST00000449025.5:ENST00000463639.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.64346	4.694935	4.74641	0.0850039	0.0193126	0.181766	0.0994526
chrX	8201142	8201242	7840691	0	+	0.49	(0.485,0.523]	chrX	822371	1026	INTRON	INTRON	ENSG00000285679	ENSG00000285679.2	ENST00000659022.1:ENST00000649338.1	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.60518	4.69472	4.78426	0.0660335	0.0233371	0.162385	0.110098
chr4	856591	856689	2178150	0	-	0.602041	(0.58,1]	chr4	220550	29	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5:ENST00000511980.5:ENST00000510799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	79	2	3.72143	4.694205	5.66698	0.0102927	0.00366718	0.0684871	0.0346803
chrX	123638433	123638528	8098449	0	-	0.463158	(0.45,0.485]	chrX	844483	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	1	89	2	3.96198	4.693925	5.42587	0.0290571	0.00281669	0.116079	0.0291091
chr7	129832295	129832393	3706516	0	-	0.520408	(0.485,0.523]	chr7	356184	17	UTR3	UTR3:EXON_MRNA	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1	protein_coding	protein_coding	protein_coding	protein_coding	1	119	2	3.98883	4.69376	5.39869	0.00941294	0.00421243	0.0653252	0.0380601
chr3	105861731	105861830	1862904	0	-	0.313131	(0.29,0.33]	chr3	189859	77	INTRON	INTRON	CBLB	ENSG00000114423.23	ENST00000645759.1:ENST00000394030.8:ENST00000646499.1:ENST00000645425.1:ENST00000646825.1:ENST00000643322.1:ENST00000403724.5:ENST00000405772.5:ENST00000447441.6:ENST00000438603.6:ENST00000443752.2:ENST00000643192.1:ENST00000642907.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	111	2	3.81717	4.6935199999999995	5.56987	0.0120918	0.0029307	0.0746305	0.0298918
chr1	43984364	43984464	111006	0	+	0.5	(0.485,0.523]	chr1	13828	1	SS3_PROX	SS3_PROX:INTRON	B4GALT2	ENSG00000117411.18	ENST00000434555.7:ENST00000372324.6:ENST00000481924.2:ENST00000497866.6:ENST00000485678.6:ENST00000356836.10:ENST00000309519.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	86	2	3.5054	4.693275	5.88115	0.012541	0.00816275	0.0761905	0.0589533
chr19	42328523	42328622	7265030	0	+	0.50505	(0.485,0.523]	chr19	745520	17	INTRON	INTRON	MEGF8	ENSG00000105429.13	ENST00000334370.8:ENST00000378073.5:ENST00000251268.11	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	3.5054	4.693275	5.88115	0.012541	0.00816275	0.0761905	0.0589533
chr16	1728637	1728737	6371222	0	+	0.62	(0.58,1]	chr16	628838	1	SS3_PROX	SS3_PROX:INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000685565.1:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	79	2	3.68463	4.69327	5.70191	0.00964351	0.00404771	0.0659937	0.0371291
chr7	74495608	74495708	3391783	0	+	0.64	(0.58,1]	chr7	327343	411	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	3.68463	4.69327	5.70191	0.00964351	0.00404771	0.0659937	0.0371291
chr17	17820864	17820942	6865729	0	-	0.461538	(0.45,0.485]	chr17	695914	1	SS3_PROX	SS3_PROX:INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	518	2	4.17684	4.69324	5.20964	0.00214832	1.98394e-5	0.0291106	8.35075e-4
chr16	85403430	85403530	6517105	0	+	0.47	(0.45,0.485]	chr16	646391	441	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.32491	4.6931449999999995	5.06138	0.0492008	0.0418883	0.149021	0.146142
chr6	52574796	52574896	3148426	0	-	0.47	(0.45,0.485]	chr6	307028	386	INTRON	INTRON	TRAM2	ENSG00000065308.5	ENST00000182527.4	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.32491	4.6931449999999995	5.06138	0.0492008	0.0418883	0.149021	0.146142
chr7	137985165	137985265	3720554	0	-	0.46	(0.45,0.485]	chr7	357307	514	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.32491	4.6931449999999995	5.06138	0.0492008	0.0418883	0.149021	0.146142
chr5	109702434	109702534	2503501	0	+	0.41	(0.39,0.419]	chr5	248829	115	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5	protein_coding	protein_coding	protein_coding	protein_coding	1	96	2	3.09555	4.69273	6.28991	0.0231436	0.00887176	0.109883	0.0634853
chr12	95492060	95492160	5296016	0	+	0.47	(0.45,0.485]	chr12	515391	57	INTRON	INTRON	METAP2	ENSG00000111142.14	ENST00000535095.5:ENST00000546753.5:ENST00000261220.13:ENST00000323666.10:ENST00000553151.5:ENST00000550777.5:ENST00000551840.5:ENST00000549808.1:ENST00000546478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.22352	4.692505	5.16149	0.0496712	0.0427653	0.160725	0.13762
chr10	75712556	75712656	4523289	0	+	0.48	(0.45,0.485]	chr10	432271	646	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	88	2	3.88066	4.69244	5.50422	0.0257993	0.00346544	0.109555	0.0335664
chr1	149524209	149524298	238839	0	+	0.449438	(0.419,0.45]	chr1	26756	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF19	ENSG00000271383.8	ENST00000651566.2:ENST00000611931.4:ENST00000612881.4:ENST00000369227.7:ENST00000426482.3	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.29342	4.692375	5.09133	0.0586308	0.0526662	0.167062	0.155565
chr13	113013163	113013263	5655755	0	+	0.44	(0.419,0.45]	chr13	555138	108	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	42	2	4.29342	4.692375	5.09133	0.0586308	0.0526662	0.167062	0.155565
chr13	19696682	19696782	5660574	0	-	0.4	(0.39,0.419]	chr13	556035	177	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	122	2	3.38413	4.691879999999999	5.99963	0.0142473	0.00460829	0.0817691	0.0406889
chr18	7677979	7678079	7006037	0	+	0.48	(0.45,0.485]	chr18	716101	1097	INTRON	INTRON	PTPRM	ENSG00000173482.17	ENST00000332175.12:ENST00000580170.6	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.49786	4.691765	4.88567	0.101311	0.0146126	0.196131	0.0837727
chr2	121757934	121758025	889140	0	+	0.472527	(0.45,0.485]	chr2	100495	1	INTRON	INTRON	TSN	ENSG00000211460.12	ENST00000455432.5:ENST00000536142.5:ENST00000389682.8:ENST00000467324.5:ENST00000498545.5:ENST00000478165.5:ENST00000490717.5:ENST00000490104.5:ENST00000495112.1:ENST00000409193.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.49786	4.691765	4.88567	0.101311	0.0146126	0.196131	0.0837727
chr11	70744083	70744183	5061722	0	-	0.62	(0.58,1]	chr11	492701	262	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	87	2	3.09402	4.69158	6.28914	0.0174733	0.00303562	0.0928044	0.0350226
chr16	85227566	85227666	6515344	0	+	0.62	(0.58,1]	chr16	646376	2	SS5_PROX	SS5_PROX:INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	87	2	3.09402	4.69158	6.28914	0.0174733	0.00303562	0.0928044	0.0350226
chr9	100152946	100153046	4198490	0	+	0.38	(0.36,0.39]	chr9	398926	206	INTRON	INTRON	INVS	ENSG00000119509.13	ENST00000262457.7:ENST00000496467.5:ENST00000262456.6:ENST00000466647.5:ENST00000460636.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	90	2	3.74547	4.6913350000000005	5.6372	0.024533	0.00550271	0.106796	0.0454065
chr15	101347529	101347625	6363013	0	-	0.479167	(0.45,0.485]	chr15	627197	13	UTR3	UTR3:EXON_MRNA:INTRON	PCSK6	ENSG00000140479.18	ENST00000677364.1:ENST00000676598.1:ENST00000558951.5:ENST00000398185.6:ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000679007.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000559605.1:ENST00000560902.5:ENST00000611967.4:ENST00000615296.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.67139	4.691245	4.7111	0.0781398	0.0223378	0.175203	0.108193
chr2	47007003	47007049	787900	0	+	0.456522	(0.45,0.485]	chr2	90019	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	TTC7A	ENSG00000068724.17	ENST00000409245.5:ENST00000319190.11:ENST00000461601.5:ENST00000394850.6:ENST00000441914.5:ENST00000409825.5:ENST00000491786.5:ENST00000484061.5:ENST00000440051.1:ENST00000652236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.67139	4.691245	4.7111	0.0781398	0.0223378	0.175203	0.108193
chr4	23795723	23795821	2208645	0	-	0.479592	(0.45,0.485]	chr4	223244	39	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PPARGC1A	ENSG00000109819.9	ENST00000509702.5:ENST00000264867.7:ENST00000613098.4:ENST00000506055.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.67139	4.691245	4.7111	0.0781398	0.0223378	0.175203	0.108193
chrX	133782049	133782149	8113987	0	-	0.46	(0.45,0.485]	chrX	845523	275	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.67139	4.691245	4.7111	0.0781398	0.0223378	0.175203	0.108193
chr1	28760148	28760247	75903	0	+	0.282828	[0,0.29]	chr1	8722	158	INTRON	INTRON	YTHDF2	ENSG00000198492.16	ENST00000542507.5:ENST00000373812.8:ENST00000541996.5:ENST00000478283.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.62442	4.690345	4.75627	0.050276	0.019938	0.148161	0.100864
chr10	103696917	103697016	4757069	0	-	0.616162	(0.58,1]	chr10	454791	34	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.49116	4.690305	4.88945	0.0388928	0.0207449	0.131324	0.102713
chr11	45882080	45882177	4850374	0	+	0.587629	(0.58,1]	chr11	463885	13	UTR3	UTR3:EXON_MRNA	CRY2	ENSG00000121671.12	ENST00000616623.4:ENST00000443527.6:ENST00000616080.2	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.49116	4.690305	4.88945	0.0388928	0.0207449	0.131324	0.102713
chr16	30992423	30992522	6579805	0	-	0.616162	(0.58,1]	chr16	657721	33	UTR3	UTR3:EXON_MRNA	STX1B	ENSG00000099365.11	ENST00000215095.11	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.49116	4.690305	4.88945	0.0388928	0.0207449	0.131324	0.102713
chr17	17716131	17716231	6689196	0	+	0.63	(0.58,1]	chr17	671338	312	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.49116	4.690305	4.88945	0.0388928	0.0207449	0.131324	0.102713
chr17	81149791	81149891	6983000	0	-	0.64	(0.58,1]	chr17	713268	149	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.49116	4.690305	4.88945	0.0388928	0.0207449	0.131324	0.102713
chr9	93619269	93619369	4184082	0	+	0.59	(0.58,1]	chr9	397705	420	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.49116	4.690305	4.88945	0.0388928	0.0207449	0.131324	0.102713
chr9	137722561	137722660	4265516	0	+	0.686869	(0.58,1]	chr9	407352	49	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000460486.3:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.49116	4.690305	4.88945	0.0388928	0.0207449	0.131324	0.102713
chr15	76406578	76406678	6326883	0	-	0.43	(0.419,0.45]	chr15	624207	15	INTRON	INTRON	SCAPER	ENSG00000140386.13	ENST00000563290.6:ENST00000538941.6:ENST00000324767.11:ENST00000303521.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.19215	4.6900949999999995	5.18804	0.0617113	0.051668	0.18013	0.148503
chr1	179035751	179035851	292570	0	+	0.37	(0.36,0.39]	chr1	33191	93	INTRON	INTRON	FAM20B	ENSG00000116199.12	ENST00000440702.5:ENST00000263733.5	protein_coding	protein_coding	protein_coding	protein_coding	2	122	2	2.98319	4.690035	6.39688	0.0119153	0.00723998	0.0749795	0.0565323
chr13	50574097	50574197	5598366	0	+	0.32	(0.29,0.33]	chr13	551685	404	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1:ENST00000484869.6	lncRNA	lncRNA	lncRNA	lncRNA	1	104	2	2.95538	4.6891	6.42282	0.0510239	3.05448e-4	0.148503	0.00616054
chr2	3362229	3362329	1081738	0	-	0.63	(0.58,1]	chr2	117664	72	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	79	2	3.85993	4.68903	5.51813	0.013519	0.00251049	0.0792526	0.026941
chr7	75935705	75935805	3396812	0	+	0.45	(0.419,0.45]	chr7	328054	124	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000449920.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	171	2	2.49524	4.68895	6.8826599999999996	0.0174296	0.00374639	0.0928044	0.0393941
chr11	70798242	70798342	5062264	0	-	0.44	(0.419,0.45]	chr11	492702	4	SS5_PROX	SS5_PROX:INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.56048	4.688594999999999	4.81671	0.08258	0.0337332	0.179396	0.133139
chr2	9593910	9594009	1085350	0	-	0.424242	(0.419,0.45]	chr2	118253	20	INTRON	INTRON	YWHAQ	ENSG00000134308.14	ENST00000238081.8:ENST00000381844.8:ENST00000474715.1:ENST00000446619.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.56048	4.688594999999999	4.81671	0.08258	0.0337332	0.179396	0.133139
chr22	17722385	17722485	7684305	0	+	0.44	(0.419,0.45]	chr22	803705	152	INTRON	INTRON	BCL2L13	ENSG00000099968.18	ENST00000337612.9:ENST00000418951.6:ENST00000538149.5:ENST00000543133.5:ENST00000611738.4:ENST00000616863.4:ENST00000618481.4:ENST00000498133.5:ENST00000317582.10:ENST00000355028.4:ENST00000399777.1:ENST00000485631.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.56048	4.688594999999999	4.81671	0.08258	0.0337332	0.179396	0.133139
chr9	94888226	94888326	4188863	0	+	0.43	(0.419,0.45]	chr9	398069	778	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000277198.6:ENST00000297979.9:ENST00000424143.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.56048	4.688594999999999	4.81671	0.08258	0.0337332	0.179396	0.133139
chr7	1008549	1008649	3526308	0	-	0.6	(0.58,1]	chr7	340566	76	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	94	2	3.16566	4.6881699999999995	6.21068	0.0304114	2.44053e-4	0.11845	0.00522003
chr11	846869	846969	4786133	0	+	0.55	(0.523,0.58]	chr11	458423	3	SS3_PROX	SS3_PROX:INTRON	TSPAN4	ENSG00000214063.12	ENST00000397411.6:ENST00000397396.5:ENST00000397397.7:ENST00000397408.5:ENST00000530404.5:ENST00000525334.5:ENST00000397406.5:ENST00000409543.6:ENST00000525201.5:ENST00000397404.5	protein_coding	protein_coding	protein_coding	protein_coding	1	104	2	3.40026	4.6880299999999995	5.9758	0.0262178	9.36996e-4	0.110264	0.0135546
chr4	3365689	3365789	2005093	0	+	0.39	(0.36,0.39]	chr4	204663	223	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	91	2	3.88364	4.68794	5.49224	0.0304242	0.00394555	0.11845	0.0367806
chr6	45251336	45251436	3142445	0	-	0.39	(0.36,0.39]	chr6	306705	2	SS3_PROX	SS3_PROX:INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5:ENST00000459689.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	123	2	3.48612	4.68787	5.88962	0.0166261	0.00356064	0.0884836	0.0342681
chr1	39419974	39420074	96912	0	+	0.43	(0.419,0.45]	chr1	11400	51	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000567887.5:ENST00000372915.8:ENST00000564288.6:ENST00000671089.2:ENST00000372925.6:ENST00000289893.8:ENST00000686067.1:ENST00000687997.1:ENST00000673980.1:ENST00000530275.3:ENST00000683517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.38804	4.687855	4.98767	0.0669167	0.0451818	0.16272	0.154539
chr1	75446618	75446718	510906	0	-	0.43	(0.419,0.45]	chr1	60648	478	INTRON	INTRON	SLC44A5	ENSG00000137968.17	ENST00000370859.8:ENST00000370855.5:ENST00000469525.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.38804	4.687855	4.98767	0.0669167	0.0451818	0.16272	0.154539
chr10	124413250	124413341	4778393	0	-	0.351648	(0.33,0.36]	chr10	456942	7	INTRON	INTRON	OAT	ENSG00000065154.12	ENST00000539214.5:ENST00000368845.6:ENST00000476917.5:ENST00000490096.5:ENST00000492376.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.57035	4.68766	4.80497	0.0945416	0.0188359	0.188571	0.0980631
chr6	156987940	156988040	3051571	0	+	0.34	(0.33,0.36]	chr6	297029	24	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.57035	4.68766	4.80497	0.0945416	0.0188359	0.188571	0.0980631
chr3	149656775	149656875	1941192	0	-	0.57	(0.523,0.58]	chr3	197501	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	WWTR1	ENSG00000018408.15	ENST00000465804.5:ENST00000360632.8:ENST00000467467.5:ENST00000479238.1	protein_coding	protein_coding	protein_coding	protein_coding	4	397	2	3.73387	4.687575	5.64128	7.43131e-4	3.64542e-4	0.0115657	0.0109532
chr8	38455957	38456057	3968183	0	-	0.49	(0.485,0.523]	chr8	379315	121	INTRON	INTRON	FGFR1	ENSG00000077782.22	ENST00000649678.1:ENST00000397091.9:ENST00000619564.3:ENST00000447712.7:ENST00000341462.9:ENST00000532791.5:ENST00000674380.1:ENST00000674189.1:ENST00000683765.1:ENST00000425967.8:ENST00000683948.1:ENST00000397113.6:ENST00000356207.9:ENST00000335922.9:ENST00000683815.1:ENST00000684654.1:ENST00000326324.10:ENST00000674474.1:ENST00000397103.5:ENST00000397108.8:ENST00000487647.5:ENST00000530701.1:ENST00000470826.5:ENST00000683276.1:ENST00000683795.1:ENST00000496296.5:ENST00000527203.5:ENST00000533668.5:ENST00000525001.5:ENST00000526742.5:ENST00000529552.5:ENST00000484370.5:ENST00000530568.5:ENST00000434187.5:ENST00000397090.4:ENST00000413133.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	101	2	4.52889	4.6875	4.84611	0.0608067	5.4844e-4	0.158506	0.00933876
chr3	114789988	114790088	1879704	0	-	0.34	(0.33,0.36]	chr3	190923	309	INTRON	INTRON	ZBTB20	ENSG00000181722.17	ENST00000675478.1:ENST00000357258.8:ENST00000462705.5:ENST00000479879.5:ENST00000463890.5:ENST00000491500.5:ENST00000480832.5:ENST00000492665.5:ENST00000488663.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.64131	4.687495	4.73368	0.0867669	0.0216127	0.182221	0.105648
chr4	13375745	13375845	2195975	0	-	0.35	(0.33,0.36]	chr4	222461	35	INTRON	INTRON	RAB28	ENSG00000157869.16	ENST00000511649.5:ENST00000330852.10:ENST00000288723.9:ENST00000508274.5:ENST00000338176.8:ENST00000630951.1:ENST00000504644.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.64131	4.687495	4.73368	0.0867669	0.0216127	0.182221	0.105648
chr4	106209249	106209349	2302351	0	-	0.35	(0.33,0.36]	chr4	231472	141	INTRON	INTRON	TBCK	ENSG00000145348.17	ENST00000273980.10:ENST00000394708.7:ENST00000510927.5:ENST00000361687.8:ENST00000394706.7:ENST00000467183.6:ENST00000514689.5:ENST00000515705.5:ENST00000511011.5:ENST00000506615.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.64131	4.687495	4.73368	0.0867669	0.0216127	0.182221	0.105648
chr7	101853651	101853751	3434345	0	+	0.53	(0.523,0.58]	chr7	332510	343	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	85	2	3.78755	4.687175	5.5868	0.020474	0.00401039	0.0979776	0.0371192
chr16	25137983	25138082	6426858	0	+	0.474747	(0.45,0.485]	chr16	635895	51	INTRON	INTRON	LCMT1	ENSG00000205629.12	ENST00000380962.9:ENST00000564011.5:ENST00000380966.8:ENST00000399069.8:ENST00000577157.1:ENST00000570981.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.41963	4.6867149999999995	4.9538	0.0569772	0.0355247	0.154343	0.137983
chr4	10109981	10110080	2195752	0	-	0.474747	(0.45,0.485]	chr4	222428	12	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000505851.5:ENST00000514319.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.41963	4.6867149999999995	4.9538	0.0569772	0.0355247	0.154343	0.137983
chr1	31414777	31414877	80072	0	+	0.66	(0.58,1]	chr1	9152	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SERINC2	ENSG00000168528.12	ENST00000373710.5:ENST00000536859.5:ENST00000487207.5:ENST00000373709.8:ENST00000536384.2:ENST00000491976.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	239	2	4.62968	4.68657	4.74346	0.0121457	5.90321e-4	0.0754623	0.0142463
chr8	39073616	39073714	3804656	0	+	0.336735	(0.33,0.36]	chr8	366115	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	ADAM9	ENSG00000168615.13	ENST00000678474.1:ENST00000676765.1:ENST00000676936.1:ENST00000677908.1:ENST00000677004.1:ENST00000677165.1:ENST00000481058.2:ENST00000676643.1:ENST00000676669.1:ENST00000679268.1:ENST00000677582.1:ENST00000676617.1:ENST00000677137.1:ENST00000678540.1:ENST00000677359.1:ENST00000678730.1:ENST00000487273.7:ENST00000678253.1:ENST00000676489.1:ENST00000379917.7:ENST00000468065.5:ENST00000481873.7:ENST00000676919.1:ENST00000678863.1:ENST00000484143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	88	2	3.69138	4.686235	5.68109	0.0201622	0.00591814	0.0973366	0.0478563
chr7	112205701	112205801	3692565	0	-	0.55	(0.523,0.58]	chr7	354970	2	SS5_PROX	SS5_PROX:INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	160	2	2.48853	4.6858900000000006	6.88325	0.0146238	0.00204616	0.0838343	0.0283511
chr11	9463970	9464070	4795775	0	+	0.34	(0.33,0.36]	chr11	459839	1	SS5_PROX	SS5_PROX:INTRON	ZNF143	ENSG00000166478.10	ENST00000531943.5:ENST00000396604.5:ENST00000530463.5:ENST00000533542.5:ENST00000532577.5:ENST00000396597.7:ENST00000438144.6:ENST00000396602.7:ENST00000496276.5:ENST00000526657.5:ENST00000299606.6:ENST00000534265.5:ENST00000412390.6:ENST00000414370.5:ENST00000417726.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.31234	4.68577	5.0592	0.0504445	0.0458858	0.154743	0.148216
chr4	140709300	140709400	2329720	0	-	0.35	(0.33,0.36]	chr4	234026	73	INTRON	INTRON	TBC1D9	ENSG00000109436.8	ENST00000442267.3	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.31234	4.68577	5.0592	0.0504445	0.0458858	0.154743	0.148216
chr13	113214764	113214864	5657355	0	+	0.56	(0.523,0.58]	chr13	555523	43	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000488558.2:ENST00000375440.9:ENST00000474116.5:ENST00000494985.5:ENST00000463426.5:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	103	2	3.1364	4.685700000000001	6.235	0.0400336	4.59688e-4	0.134064	0.00821903
chr3	51667875	51667974	1472219	0	+	0.525253	(0.523,0.58]	chr3	157989	46	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	1	103	2	3.1364	4.685700000000001	6.235	0.0400336	4.59688e-4	0.134064	0.00821903
chr10	75504689	75504789	4521205	0	+	0.51	(0.485,0.523]	chr10	432249	531	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	3.7132	4.685555	5.65791	0.0181582	0.00492265	0.0921579	0.0423296
chr16	87739923	87740023	6656480	0	-	0.4	(0.39,0.419]	chr16	665892	89	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	99	2	4.27183	4.685445	5.09906	0.0535378	0.00148741	0.150319	0.0186923
chr10	100972328	100972428	4569846	0	+	0.52	(0.485,0.523]	chr10	436227	4	SS3_PROX	SS3_PROX:INTRON	SEMA4G	ENSG00000095539.15	ENST00000519649.5:ENST00000521006.5:ENST00000518124.5:ENST00000518244.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	85	2	3.61303	4.685435	5.75784	0.0154142	0.00630038	0.0849828	0.0501647
chr16	29298992	29299092	6433828	0	+	0.56	(0.523,0.58]	chr16	636749	183	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.5249	4.685295	4.84569	0.0610722	0.0266135	0.158506	0.118113
chr2	239378894	239378994	1392501	0	-	0.57	(0.523,0.58]	chr2	148759	256	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.5249	4.685295	4.84569	0.0610722	0.0266135	0.158506	0.118113
chr20	35886765	35886864	7465813	0	+	0.565657	(0.523,0.58]	chr20	777429	82	INTRON	INTRON	PHF20	ENSG00000025293.17	ENST00000374012.8:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5:ENST00000495338.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.5249	4.685295	4.84569	0.0610722	0.0266135	0.158506	0.118113
chr7	40328646	40328746	3355803	0	+	0.37	(0.36,0.39]	chr7	324345	114	INTRON	INTRON	SUGCT	ENSG00000175600.16	ENST00000335693.9:ENST00000401647.7:ENST00000628514.3:ENST00000416370.2:ENST00000488110.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.48559	4.685295	4.885	0.0697729	0.036329	0.167185	0.139793
chr7	47376315	47376415	3587555	0	-	0.53	(0.523,0.58]	chr7	346036	63	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.5249	4.685295	4.84569	0.0610722	0.0266135	0.158506	0.118113
chrX	46494322	46494422	7874598	0	+	0.54	(0.523,0.58]	chrX	825279	198	INTRON	INTRON	KRBOX4	ENSG00000147121.16	ENST00000478600.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.5249	4.685295	4.84569	0.0610722	0.0266135	0.158506	0.118113
chr7	47353725	47353825	3587328	0	-	0.63	(0.58,1]	chr7	346030	70	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	4	329	2	3.95214	4.68521	5.41828	0.00168842	1.82418e-5	0.0254427	7.88986e-4
chrX	2383260	2383360	7967676	0	-	0.39	(0.36,0.39]	chrX	834355	449	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	245	2	4.48343	4.685195	4.88696	0.0048224	2.78875e-4	0.0453395	0.00577243
chr2	3298295	3298395	1081090	0	-	0.45	(0.419,0.45]	chr2	117633	156	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	124	2	3.43318	4.685185000000001	5.93719	0.0176643	0.00429346	0.0909046	0.0387256
chr20	36859673	36859773	7557098	0	-	0.6	(0.58,1]	chr20	789158	2	UTR5	UTR5:EXON_MRNA:INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	3.56821	4.685055	5.8019	0.007984	0.00550024	0.0596361	0.0454065
chr2	121338969	121339068	1261067	0	-	0.424242	(0.419,0.45]	chr2	135874	13	UTR3	UTR3:EXON_MRNA	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8	protein_coding	protein_coding	protein_coding	protein_coding	2	124	2	2.92212	4.6848	6.44748	0.0141969	0.00782663	0.0833845	0.0592048
chr12	26646503	26646602	5399709	0	-	0.484848	(0.45,0.485]	chr12	528625	141	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	0	43	2	4.11446	4.68478	5.2551	0.0592571	0.0373953	0.176157	0.130656
chr10	65667397	65667497	4494841	0	+	0.31	(0.29,0.33]	chr10	429847	67	INTRON	INTRON	LINC01515	ENSG00000228065.12	ENST00000433152.8:ENST00000669518.1:ENST00000653705.1:ENST00000666779.1:ENST00000659321.1:ENST00000666619.1:ENST00000661052.1:ENST00000600848.2:ENST00000659135.1:ENST00000663281.1:ENST00000598092.3:ENST00000601888.4:ENST00000687614.1:ENST00000671055.1:ENST00000659962.1:ENST00000660014.1:ENST00000659814.1:ENST00000691510.1:ENST00000666706.1:ENST00000660324.1:ENST00000595269.5:ENST00000618687.4:ENST00000626907.2:ENST00000626101.2:ENST00000629716.2:ENST00000594054.5	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.51618	4.684515	4.85285	0.0567079	0.0285091	0.154343	0.123012
chr7	77915891	77915991	3402374	0	+	0.31	(0.29,0.33]	chr7	328603	51	INTRON	INTRON	PHTF2	ENSG00000006576.17	ENST00000422959.7:ENST00000416283.6:ENST00000307305.12:ENST00000424760.5:ENST00000415251.6:ENST00000275575.11:ENST00000450574.5:ENST00000248550.7:ENST00000454592.5:ENST00000479515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.51618	4.684515	4.85285	0.0567079	0.0285091	0.154343	0.123012
chr7	47355916	47356015	3587350	0	-	0.555556	(0.523,0.58]	chr7	346030	92	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	104	2	2.98385	4.68447	6.38509	0.0505794	3.00426e-4	0.148456	0.00607383
chr12	62692946	62693043	5444969	0	-	0.412371	(0.39,0.419]	chr12	535880	28	INTRON	INTRON	PPM1H	ENSG00000111110.12	ENST00000228705.7:ENST00000551214.5:ENST00000551519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	113	2	3.56606	4.68441	5.80276	0.023382	0.00233691	0.103984	0.0257208
chr13	20074233	20074333	5543982	0	+	0.56	(0.523,0.58]	chr13	547321	60	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000382883.7:ENST00000382870.7:ENST00000494061.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	116	2	2.9514	4.684365	6.41733	0.0109262	0.00490887	0.0706366	0.0457614
chr9	96603511	96603611	4345474	0	-	0.41	(0.39,0.419]	chr9	415195	364	INTRON	INTRON	CDC14B	ENSG00000081377.17	ENST00000474602.5:ENST00000412285.6:ENST00000375241.6:ENST00000375240.7:ENST00000463569.5:ENST00000415608.1:ENST00000496750.5:ENST00000463547.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.48504	4.68435	4.88366	0.0707789	0.0364893	0.168159	0.139793
chr10	74487262	74487362	4515052	0	+	0.34	(0.33,0.36]	chr10	431960	883	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.49572	4.68431	4.8729	0.103264	0.0164782	0.197541	0.091341
chr18	35586549	35586649	7046686	0	+	0.36	(0.33,0.36]	chr18	719462	43	INTRON	INTRON	GALNT1	ENSG00000141429.14	ENST00000586725.1:ENST00000269195.6:ENST00000591924.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.49572	4.68431	4.8729	0.103264	0.0164782	0.197541	0.091341
chr20	13465935	13466035	7526213	0	-	0.36	(0.33,0.36]	chr20	785591	304	INTRON	INTRON	TASP1	ENSG00000089123.16	ENST00000480436.5:ENST00000337743.9:ENST00000465381.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.49572	4.68431	4.8729	0.103264	0.0164782	0.197541	0.091341
chr5	141936033	141936128	2555189	0	+	0.357895	(0.33,0.36]	chr5	253849	11	INTRON	INTRON	DELE1	ENSG00000081791.9	ENST00000194118.8:ENST00000432126.7:ENST00000507481.2	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.49572	4.68431	4.8729	0.103264	0.0164782	0.197541	0.091341
chr6	31734663	31734763	3119432	0	-	0.57	(0.523,0.58]	chr6	303331	4	SS3_PROX	SS3_PROX:INTRON	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000616760.1:ENST00000375784.8	protein_coding	protein_coding	protein_coding	protein_coding	1	106	2	3.55989	4.68431	5.80873	0.0200759	0.00145893	0.0972041	0.0184991
chr7	39697710	39697810	3351603	0	+	0.34	(0.33,0.36]	chr7	324082	2	SS5_PROX	SS5_PROX:INTRON	RALA	ENSG00000006451.8	ENST00000468201.1:ENST00000005257.7:ENST00000434466.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.49572	4.68431	4.8729	0.103264	0.0164782	0.197541	0.091341
chr17	57477680	57477780	6761989	0	+	0.56	(0.523,0.58]	chr17	682137	326	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	86	2	3.93421	4.68416	5.43411	0.026041	0.00274644	0.109673	0.028553
chr10	74267310	74267410	4512847	0	+	0.48	(0.45,0.485]	chr10	431931	239	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.59225	4.68398	4.77571	0.0719884	0.0259502	0.168159	0.116361
chr10	119593147	119593247	4773714	0	-	0.47	(0.45,0.485]	chr10	456437	3	SS5_PROX	SS5_PROX:INTRON	TIAL1	ENSG00000151923.18	ENST00000369093.6:ENST00000436547.7:ENST00000489822.5:ENST00000497671.5:ENST00000470781.5:ENST00000462373.1:ENST00000479729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.59225	4.68398	4.77571	0.0719884	0.0259502	0.168159	0.116361
chr15	41759497	41759588	6086441	0	+	0.483516	(0.45,0.485]	chr15	598599	1	EXON_MRNA	EXON_MRNA:INTRON	MGA	ENSG00000174197.18	ENST00000545763.6:ENST00000570161.6:ENST00000566586.6:ENST00000219905.13:ENST00000564190.1:ENST00000568255.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.59225	4.68398	4.77571	0.0719884	0.0259502	0.168159	0.116361
chr19	322636	322735	7303102	0	-	0.464646	(0.45,0.485]	chr19	752407	86	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.59225	4.68398	4.77571	0.0719884	0.0259502	0.168159	0.116361
chr19	34277078	34277178	7242118	0	+	0.48	(0.45,0.485]	chr19	741568	111	INTRON	INTRON	GARRE1	ENSG00000166398.14	ENST00000588470.5:ENST00000299505.8:ENST00000589583.5:ENST00000588338.6:ENST00000592124.1:ENST00000585833.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.59225	4.68398	4.77571	0.0719884	0.0259502	0.168159	0.116361
chr7	42925097	42925197	3581882	0	-	0.46	(0.45,0.485]	chr7	345257	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000256646:PSMA2	ENSG00000256646.8:ENSG00000106588.12	ENST00000442788.5:ENST00000677234.1:ENST00000677660.1:ENST00000676779.1:ENST00000431882.4:ENST00000677768.1:ENST00000433579.1:ENST00000679247.1:ENST00000677581.1:ENST00000223321.9:ENST00000457444.6:ENST00000436986.5:ENST00000678407.1:ENST00000677578.1:ENST00000677139.1:ENST00000678034.1:ENST00000445517.1:ENST00000411875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.59225	4.68398	4.77571	0.0719884	0.0259502	0.168159	0.116361
chr16	8856981	8857077	6546167	0	-	0.65625	(0.58,1]	chr16	651451	13	INTRON	INTRON	CARHSP1	ENSG00000153048.11	ENST00000396593.6:ENST00000611932.4:ENST00000618335.4:ENST00000619881.4:ENST00000610831.4:ENST00000614449.4:ENST00000311052.10:ENST00000561530.5:ENST00000567554.5:ENST00000565287.5:ENST00000567908.5:ENST00000570125.5:ENST00000568117.5:ENST00000568968.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.54927	4.683945	4.81862	0.0643046	0.0102696	0.161669	0.0678072
chr2	241721930	241722014	1078637	0	+	0.595238	(0.58,1]	chr2	117261	1	INTRON	INTRON	ING5	ENSG00000168395.16	ENST00000313552.11:ENST00000406941.5:ENST00000445620.5:ENST00000493578.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.54927	4.683945	4.81862	0.0643046	0.0102696	0.161669	0.0678072
chr1	20998231	20998330	416221	0	-	0.343434	(0.33,0.36]	chr1	48657	2	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000264211.13:ENST00000686579.1:ENST00000688741.1:ENST00000684485.1:ENST00000681717.1:ENST00000681767.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000356916.7:ENST00000682284.1:ENST00000438975.5:ENST00000411888.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.65869	4.683815	4.70894	0.0798152	0.0248983	0.176933	0.114418
chr20	45020388	45020488	7485704	0	+	0.35	(0.33,0.36]	chr20	780002	161	INTRON	INTRON	STK4	ENSG00000101109.12	ENST00000499879.6:ENST00000372806.8:ENST00000372801.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.65869	4.683815	4.70894	0.0798152	0.0248983	0.176933	0.114418
chr21	33711638	33711738	7612121	0	+	0.36	(0.33,0.36]	chr21	794967	219	INTRON	INTRON	ITSN1	ENSG00000205726.15	ENST00000399353.5:ENST00000444491.5:ENST00000470742.5:ENST00000381285.8:ENST00000381291.8:ENST00000399367.7:ENST00000399352.5:ENST00000399349.5:ENST00000399355.6:ENST00000381318.8:ENST00000451686.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.65869	4.683815	4.70894	0.0798152	0.0248983	0.176933	0.114418
chr7	128593317	128593417	3473808	0	+	0.34	(0.33,0.36]	chr7	335610	9	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	0	39	2	4.65869	4.683815	4.70894	0.0798152	0.0248983	0.176933	0.114418
chr19	34384597	34384697	7243196	0	+	0.51	(0.485,0.523]	chr19	741718	26	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	95	2	2.97038	4.68381	6.39724	0.0267011	0.00505512	0.118343	0.0465263
chr7	139702146	139702245	3723167	0	-	0.575758	(0.523,0.58]	chr7	357498	701	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	2	115	2	3.48688	4.6838	5.88072	0.0126258	0.00280274	0.0761905	0.0289791
chr1	52071727	52071827	124589	0	+	0.51	(0.485,0.523]	chr1	15518	4	SS5_PROX	SS5_PROX:INTRON	BTF3L4	ENSG00000134717.18	ENST00000477828.6:ENST00000489308.6:ENST00000526132.5:ENST00000313334.13:ENST00000472944.6:ENST00000484036.1:ENST00000533836.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.52142	4.683765	4.84611	0.0608067	0.0273555	0.158506	0.119337
chr10	119360150	119360250	4594849	0	+	0.51	(0.485,0.523]	chr10	439173	332	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.52142	4.683765	4.84611	0.0608067	0.0273555	0.158506	0.119337
chr17	4835038	4835138	6671903	0	+	0.51	(0.485,0.523]	chr17	668609	10	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.52142	4.683765	4.84611	0.0608067	0.0273555	0.158506	0.119337
chr2	235728179	235728278	1064886	0	+	0.50505	(0.485,0.523]	chr2	115681	94	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.52142	4.683765	4.84611	0.0608067	0.0273555	0.158506	0.119337
chr22	35850382	35850482	7804042	0	-	0.52	(0.485,0.523]	chr22	817785	99	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000359369.8:ENST00000695807.1:ENST00000408983.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.52142	4.683765	4.84611	0.0608067	0.0273555	0.158506	0.119337
chr3	195711065	195711165	1665029	0	+	0.5	(0.485,0.523]	chr3	174624	1	SS3_PROX	SS3_PROX:INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000420851.6:ENST00000431767.5:ENST00000451228.5:ENST00000438608.5:ENST00000445707.3:ENST00000630874.2:ENST00000432194.7:ENST00000420459.5:ENST00000424730.5:ENST00000417704.5:ENST00000595086.5:ENST00000600197.1:ENST00000594446.5:ENST00000629537.2:ENST00000627035.2:ENST00000631359.2:ENST00000629721.2:ENST00000597662.5:ENST00000599566.5:ENST00000600288.5:ENST00000626872.2:ENST00000630197.2:ENST00000594976.5:ENST00000612098.4:ENST00000615212.4:ENST00000594101.3:ENST00000628439.2:ENST00000631352.2:ENST00000626904.2:ENST00000600382.5:ENST00000627863.2:ENST00000628668.2:ENST00000628053.2:ENST00000625971.2:ENST00000630675.2:ENST00000597982.5:ENST00000630387.2:ENST00000626585.2:ENST00000595382.5:ENST00000627016.2:ENST00000626566.2:ENST00000625383.2:ENST00000626979.2:ENST00000628392.2:ENST00000627471.2:ENST00000625531.2:ENST00000626852.2:ENST00000593988.2:ENST00000626233.2:ENST00000628508.2:ENST00000628003.2:ENST00000631263.2:ENST00000629511.2:ENST00000627356.2:ENST00000631345.2:ENST00000631037.2:ENST00000626346.2:ENST00000628567.2:ENST00000432601.3:ENST00000627689.2:ENST00000628754.2:ENST00000629807.2:ENST00000628125.2:ENST00000630415.2:ENST00000627609.1:ENST00000627993.2:ENST00000628982.1:ENST00000597871.1:ENST00000455807.2:ENST00000627297.2:ENST00000625665.1:ENST00000626093.1	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.52142	4.683765	4.84611	0.0608067	0.0273555	0.158506	0.119337
chr12	120998967	120999067	5341128	0	+	0.6	(0.58,1]	chr12	521577	3	SS3_PROX	SS3_PROX:INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000560968.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.62403	4.683745	4.74346	0.0578275	0.0121457	0.154343	0.0754623
chr19	1169543	1169643	7305748	0	-	0.68	(0.58,1]	chr19	753058	5	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.62403	4.683745	4.74346	0.0578275	0.0121457	0.154343	0.0754623
chr9	114211922	114212021	4226279	0	+	0.606061	(0.58,1]	chr9	400807	5	INTRON	INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8:ENST00000451716.5:ENST00000494090.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.62403	4.683745	4.74346	0.0578275	0.0121457	0.154343	0.0754623
chr9	133972690	133972790	4430132	0	-	0.64	(0.58,1]	chr9	423331	331	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.62403	4.683745	4.74346	0.0578275	0.0121457	0.154343	0.0754623
chr6	137869424	137869523	3010381	0	+	0.424242	(0.419,0.45]	chr6	294494	13	INTRON	INTRON	TNFAIP3	ENSG00000118503.16	ENST00000421450.1:ENST00000612899.5:ENST00000420009.5:ENST00000237289.8:ENST00000433680.1	protein_coding	protein_coding	protein_coding	protein_coding	2	252	2	4.4722	4.68349	4.89478	0.00553452	3.00412e-4	0.0491917	0.00607383
chr5	139653862	139653962	2549699	0	+	0.62	(0.58,1]	chr5	253168	23	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	3.44157	4.683425	5.92528	0.00760198	0.0062948	0.0561937	0.0523832
chr21	33237146	33237246	7609140	0	+	0.46	(0.45,0.485]	chr21	794612	62	INTRON	INTRON	IFNAR2	ENSG00000159110.21	ENST00000683941.1:ENST00000382264.7:ENST00000342136.9:ENST00000404220.7:ENST00000420068.1:ENST00000342101.7:ENST00000382238.6:ENST00000413881.5:ENST00000443073.5:ENST00000447980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	107	2	3.47219	4.68331	5.89443	0.0246436	0.00141013	0.107246	0.0180659
chr13	75392290	75392390	5727107	0	-	0.36	(0.33,0.36]	chr13	561722	151	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	2	236	2	4.24681	4.6829350000000005	5.11906	0.00658411	1.27314e-4	0.0538298	0.00327695
chr9	123637854	123637954	4398960	0	-	0.45	(0.419,0.45]	chr9	419680	70	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1:ENST00000474676.1:ENST00000475615.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	113	2	3.43953	4.682925	5.92632	0.0302191	0.00191339	0.118034	0.0223437
chr21	45476580	45476662	7631035	0	+	0.414634	(0.39,0.419]	chr21	797685	1	SS5_PROX	SS5_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	1	110	2	2.92909	4.68249	6.43589	0.0609293	4.66094e-4	0.158506	0.00828434
chr7	24581260	24581360	3330232	0	+	0.47	(0.45,0.485]	chr7	322481	66	INTRON	INTRON	PALS2	ENSG00000105926.16	ENST00000432190.5:ENST00000409761.5:ENST00000222644.10:ENST00000396475.6:ENST00000430180.5	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	3.46316	4.682415	5.90167	0.0137135	0.00952494	0.0799457	0.0650078
chr2	240625568	240625668	1075199	0	+	0.7	(0.58,1]	chr2	116656	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2:ENST00000407714.2	protein_coding	protein_coding	protein_coding	protein_coding	2	110	2	2.86246	4.68238	6.5023	0.0112778	0.00194503	0.0717097	0.0275844
chr5	651990	652089	2378802	0	+	0.59596	(0.58,1]	chr5	237646	37	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	94	2	3.09824	4.68184	6.26544	0.0341637	2.06156e-4	0.125129	0.00461335
chr5	1326174	1326255	2609075	0	-	0.62963	(0.58,1]	chr5	259716	3	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000506641.5:ENST00000507195.5:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	94	2	3.09824	4.68184	6.26544	0.0341637	2.06156e-4	0.125129	0.00461335
chr20	33521771	33521871	7457862	0	+	0.38	(0.36,0.39]	chr20	776442	311	INTRON	INTRON	CBFA2T2	ENSG00000078699.22	ENST00000471007.1:ENST00000342704.11:ENST00000375279.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	93	2	3.18563	4.6814800000000005	6.17733	0.0191961	0.0104543	0.0994526	0.0688771
chr2	235046815	235046914	1062443	0	+	0.474747	(0.45,0.485]	chr2	115634	32	INTRON	INTRON	SH3BP4	ENSG00000130147.16	ENST00000392011.7:ENST00000409212.5:ENST00000344528.8	protein_coding	protein_coding	protein_coding	protein_coding	1	116	2	3.84298	4.6814350000000005	5.51989	0.0131965	0.00357389	0.0785449	0.0342681
chr8	25220204	25220303	3774440	0	+	0.444444	(0.419,0.45]	chr8	363466	349	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000410074.5:ENST00000481100.5	protein_coding	protein_coding	protein_coding	protein_coding	0	44	2	4.08324	4.68096	5.27868	0.0727147	0.0457732	0.199502	0.142336
chr3	65903503	65903601	1814512	0	-	0.428571	(0.419,0.45]	chr3	187306	3	INTRON	INTRON	MAGI1:MAGI1-IT1	ENSG00000151276.24:ENSG00000272610.1	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5:ENST00000460754.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:processed_transcript	1	111	2	3.00229	4.68063	6.35897	0.0572793	6.44911e-4	0.154343	0.0104285
chr21	42845958	42846057	7675431	0	-	0.525253	(0.523,0.58]	chr21	802287	23	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	1	111	2	2.6197	4.680435	6.74117	0.0853454	1.05811e-4	0.181766	0.00286061
chr17	15467920	15468019	6860114	0	-	0.474747	(0.45,0.485]	chr17	695071	4	INTRON	INTRON	TVP23C-CDRT4:CDRT4	ENSG00000259024.6:ENSG00000239704.11	ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	116	2	3.29511	4.680400000000001	6.06569	0.0104281	0.00504904	0.0687558	0.0432173
chrX	133654236	133654336	8112698	0	-	0.31	(0.29,0.33]	chrX	845480	573	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000692074.1:ENST00000667662.1:ENST00000666017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	95	2	4.3367000000000004	4.680325	5.02395	0.0445554	9.82971e-4	0.140478	0.0140583
chr19	7269595	7269695	7324972	0	-	0.57	(0.523,0.58]	chr19	756833	13	INTRON	INTRON	INSR	ENSG00000171105.14	ENST00000341500.9:ENST00000302850.10:ENST00000598216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.23973	4.680115	5.1205	0.0444247	0.0416463	0.153511	0.136301
chr2	113196407	113196507	879515	0	+	0.55	(0.523,0.58]	chr2	99504	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PSD4	ENSG00000125637.16	ENST00000245796.11:ENST00000418251.6:ENST00000441564.7:ENST00000409656.5:ENST00000493329.1:ENST00000487574.1:ENST00000409378.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.23973	4.680115	5.1205	0.0444247	0.0416463	0.153511	0.136301
chr22	46616585	46616685	7744341	0	+	0.58	(0.523,0.58]	chr22	812034	389	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000447351.5:ENST00000431155.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.23973	4.680115	5.1205	0.0444247	0.0416463	0.153511	0.136301
chr6	16619516	16619616	3103034	0	-	0.34	(0.33,0.36]	chr6	300871	30	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6:ENST00000495178.1:ENST00000646259.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	119	2	3.40393	4.68008	5.95623	0.0129408	0.0041141	0.0775979	0.0374453
chr9	130479215	130479315	4253218	0	+	0.67	(0.58,1]	chr9	405055	1	SS3_PROX	SS3_PROX:INTRON	ASS1	ENSG00000130707.18	ENST00000352480.10:ENST00000372394.5:ENST00000372393.7:ENST00000467695.5:ENST00000493984.6:ENST00000492400.5:ENST00000470849.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	89	2	4.47001	4.67973	4.88945	0.0388928	4.15967e-4	0.131324	0.00768537
chr10	44969764	44969864	4483226	0	+	0.63	(0.58,1]	chr10	428601	2	SS3_PROX	SS3_PROX:INTRON	RASSF4	ENSG00000107551.21	ENST00000489171.5:ENST00000340258.10:ENST00000427758.5:ENST00000483709.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.66416	4.6796299999999995	4.6951	0.0521567	0.0144381	0.148503	0.0833845
chr10	79230470	79230570	4533666	0	+	0.59	(0.58,1]	chr10	432457	138	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.66416	4.6796299999999995	4.6951	0.0521567	0.0144381	0.148503	0.0833845
chr11	70760870	70760970	5061890	0	-	0.62	(0.58,1]	chr11	492701	430	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.66416	4.6796299999999995	4.6951	0.0521567	0.0144381	0.148503	0.0833845
chr16	88579222	88579322	6521591	0	+	0.59	(0.58,1]	chr16	646718	11	INTRON	INTRON	ZC3H18	ENSG00000158545.16	ENST00000301011.10:ENST00000452588.6:ENST00000569435.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.66416	4.6796299999999995	4.6951	0.0521567	0.0144381	0.148503	0.0833845
chr2	151410527	151410627	924433	0	+	0.59	(0.58,1]	chr2	102817	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RIF1	ENSG00000080345.18	ENST00000453091.6:ENST00000428287.6:ENST00000494333.1:ENST00000444746.7:ENST00000243326.9:ENST00000414861.6:ENST00000430328.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.66416	4.6796299999999995	4.6951	0.0521567	0.0144381	0.148503	0.0833845
chr21	45434243	45434343	7630605	0	+	0.67	(0.58,1]	chr21	797656	284	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.66416	4.6796299999999995	4.6951	0.0521567	0.0144381	0.148503	0.0833845
chr22	31624049	31624149	7788305	0	-	0.67	(0.58,1]	chr22	817183	2	SS3_PROX	SS3_PROX:INTRON	PISD	ENSG00000241878.12	ENST00000460723.5:ENST00000439502.7:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5:ENST00000474017.5:ENST00000478893.5:ENST00000491342.1:ENST00000422020.5:ENST00000442379.1:ENST00000429683.1:ENST00000431201.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.66416	4.6796299999999995	4.6951	0.0521567	0.0144381	0.148503	0.0833845
chr8	143486946	143487046	4096462	0	-	0.6	(0.58,1]	chr8	389272	16	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6:ENST00000528401.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.66416	4.6796299999999995	4.6951	0.0521567	0.0144381	0.148503	0.0833845
chr11	18011417	18011514	5015373	0	-	0.556701	(0.523,0.58]	chr11	484704	9	INTRON	INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528200.5:ENST00000532265.5:ENST00000529728.5:ENST00000530613.5:ENST00000532389.5:ENST00000530925.5:ENST00000533328.5:ENST00000532212.5:ENST00000524716.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	104	2	3.4477	4.679485	5.91127	0.0242383	0.00111349	0.106588	0.0152496
chr6	138465451	138465551	3273795	0	-	0.44	(0.419,0.45]	chr6	316903	179	INTRON	INTRON	NHSL1	ENSG00000135540.12	ENST00000427025.6:ENST00000343505.10:ENST00000342260.9:ENST00000426841.6:ENST00000491526.6:ENST00000533765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	108	2	4.48295	4.679465	4.87598	0.0768574	9.16167e-4	0.174882	0.0133855
chr6	107176445	107176545	3221999	0	-	0.32	(0.29,0.33]	chr6	312530	213	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.2311	4.679399999999999	5.1277	0.0471437	0.0382902	0.156915	0.131324
chr1	59701793	59701892	142174	0	+	0.353535	(0.33,0.36]	chr1	16921	25	INTRON	INTRON	FGGY	ENSG00000172456.18	ENST00000634606.1:ENST00000371218.8:ENST00000634364.1:ENST00000303721.12:ENST00000635297.1:ENST00000634399.1:ENST00000424725.2:ENST00000635156.1:ENST00000371212.5:ENST00000371210.1:ENST00000493891.5:ENST00000476939.5:ENST00000472783.5:ENST00000471169.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.40703	4.67933	4.95163	0.0583482	0.0390931	0.155373	0.142605
chr22	24101928	24102019	7695381	0	+	0.582418	(0.58,1]	chr22	805520	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CABIN1:ENSG00000232545	ENSG00000099991.18:ENSG00000232545.1	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1:ENST00000444093.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	4	147	2	3.18914	4.679295	6.16945	0.00387582	0.00170421	0.0401256	0.0205925
chr1	17673386	17673486	54945	0	+	0.54	(0.523,0.58]	chr1	5603	84	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	103	2	3.35121	4.67911	6.00701	0.0284134	8.61362e-4	0.114906	0.0127848
chr1	174833258	174833358	284753	0	+	0.53	(0.523,0.58]	chr1	32787	209	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000251507.8:ENST00000681986.1:ENST00000529145.6:ENST00000325589.9:ENST00000469553.6:ENST00000367687.5:ENST00000347255.6:ENST00000489615.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.34118	4.678974999999999	5.01677	0.0482765	0.0372357	0.144601	0.139793
chr9	131164144	131164225	4256673	0	+	0.555556	(0.523,0.58]	chr9	405498	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NUP214	ENSG00000126883.19	ENST00000695497.1:ENST00000695498.1:ENST00000695496.1:ENST00000695495.1:ENST00000359428.10:ENST00000411637.6:ENST00000652454.1:ENST00000525980.5:ENST00000489260.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.34118	4.678974999999999	5.01677	0.0482765	0.0372357	0.144601	0.139793
chr8	30446742	30446842	3788790	0	+	0.53	(0.523,0.58]	chr8	364900	4	SS3_PROX	SS3_PROX:INTRON	RBPMS	ENSG00000157110.16	ENST00000320203.8:ENST00000339877.8:ENST00000287771.9:ENST00000397323.9:ENST00000517860.5:ENST00000520161.5:ENST00000523115.5:ENST00000519647.5:ENST00000521816.1:ENST00000520191.5:ENST00000523717.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	136	2	4.32821	4.67874	5.02927	0.0095202	0.00503935	0.0650078	0.0464868
chr22	50729907	50730007	7755491	0	+	0.63	(0.58,1]	chr22	812811	2	SS5_PROX	SS5_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2:ENST00000659388.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	102	2	3.89863	4.678675	5.45872	0.00766639	0.00211999	0.0583292	0.0239744
chr19	34389495	34389595	7243245	0	+	0.49	(0.485,0.523]	chr19	741718	75	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.23628	4.678599999999999	5.12092	0.045492200000000003	0.0414411	0.154539	0.136301
chr8	22557208	22557308	3771863	0	+	0.51	(0.485,0.523]	chr8	362919	3	SS5_PROX	SS5_PROX:INTRON	SORBS3	ENSG00000120896.14	ENST00000240123.12:ENST00000517500.5:ENST00000517535.5:ENST00000523402.5:ENST00000520563.3:ENST00000524057.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.23628	4.678599999999999	5.12092	0.045492200000000003	0.0414411	0.154539	0.136301
chr7	72947807	72947905	3387839	0	+	0.520408	(0.485,0.523]	chr7	326777	17	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	POM121	ENSG00000196313.13	ENST00000627934.3:ENST00000395270.5:ENST00000434423.5	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	3.5054	4.67835	5.8513	0.0131886	0.00816275	0.0785398	0.0589533
chr11	20118946	20119044	4820229	0	+	0.510204	(0.485,0.523]	chr11	461632	8	UTR3	UTR3:EXON_MRNA	NAV2	ENSG00000166833.23	ENST00000360655.8:ENST00000396085.6:ENST00000349880.9	protein_coding	protein_coding	protein_coding	protein_coding	2	144	2	3.09852	4.678025	6.25753	0.021396	4.52177e-4	0.100242	0.00816702
chr6	48067655	48067755	3146625	0	-	0.42	(0.419,0.45]	chr6	306785	2	SS5_PROX	SS5_PROX:INTRON	PTCHD4	ENSG00000244694.8	ENST00000339488.9:ENST00000398738.3:ENST00000679966.1	protein_coding	protein_coding	protein_coding	protein_coding	1	115	2	2.72124	4.6779150000000005	6.63459	0.0837482	3.11318e-4	0.181508	0.00624487
chr19	1412067	1412166	7187467	0	+	0.616162	(0.58,1]	chr19	731286	16	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	145	2	2.63329	4.677855	6.72242	0.00829614	0.00121317	0.0597702	0.0210863
chr12	132542424	132542524	5353040	0	+	0.61	(0.58,1]	chr12	523670	141	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	93	2	3.29173	4.677835	6.06394	0.0243429	3.80904e-4	0.106588	0.00721291
chr7	44454981	44455081	3584744	0	-	0.38	(0.36,0.39]	chr7	345547	269	INTRON	INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000472246.5:ENST00000464812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.56076	4.67767	4.79458	0.103289	0.0207145	0.197541	0.102713
chr14	105216749	105216847	6058165	0	-	0.602041	(0.58,1]	chr14	594783	35	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000392557.8:ENST00000446501.6:ENST00000635152.1:ENST00000547374.5:ENST00000551787.5:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.29454	4.677619999999999	5.0607	0.0305531	0.029633	0.126768	0.116079
chr16	85513084	85513184	6518202	0	+	0.65	(0.58,1]	chr16	646391	1538	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.29454	4.677619999999999	5.0607	0.0305531	0.029633	0.126768	0.116079
chr2	219571718	219571816	1036508	0	+	0.683673	(0.58,1]	chr2	112995	19	INTRON	INTRON	INHA	ENSG00000123999.5	ENST00000489456.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	39	2	4.29454	4.677619999999999	5.0607	0.0305531	0.029633	0.126768	0.116079
chr21	44317307	44317402	7627899	0	+	0.663158	(0.58,1]	chr21	797349	4	INTRON	INTRON	PFKL	ENSG00000141959.17	ENST00000397961.6:ENST00000349048.9:ENST00000466134.5:ENST00000474114.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.29454	4.677619999999999	5.0607	0.0305531	0.029633	0.126768	0.116079
chr22	31631590	31631682	7788394	0	-	0.652174	(0.58,1]	chr22	817215	9	INTRON	INTRON	PISD	ENSG00000241878.12	ENST00000460723.5:ENST00000439502.7:ENST00000437808.5:ENST00000435900.5:ENST00000474017.5:ENST00000491342.1:ENST00000429683.1:ENST00000431201.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.29454	4.677619999999999	5.0607	0.0305531	0.029633	0.126768	0.116079
chrX	1443809	1443908	7965931	0	-	0.59596	(0.58,1]	chrX	834314	11	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9:ENST00000474865.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.29454	4.677619999999999	5.0607	0.0305531	0.029633	0.126768	0.116079
chr10	76063582	76063682	4526809	0	+	0.41	(0.39,0.419]	chr10	432311	44	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	92	2	3.98343	4.677575	5.37172	0.0367885	0.00309726	0.129052	0.0311614
chr1	28963244	28963344	76766	0	+	0.39	(0.36,0.39]	chr1	8738	481	INTRON	INTRON	EPB41	ENSG00000159023.22	ENST00000647103.1:ENST00000642937.2:ENST00000647918.1:ENST00000646800.1:ENST00000644342.1:ENST00000646189.1:ENST00000482464.6:ENST00000649717.1:ENST00000373800.7:ENST00000643155.1:ENST00000347529.7:ENST00000646260.1:ENST00000373798.5:ENST00000644600.1:ENST00000649674.1:ENST00000643173.1:ENST00000343067.9:ENST00000644780.1:ENST00000650265.1:ENST00000648181.1:ENST00000643604.1:ENST00000648891.1:ENST00000373797.2:ENST00000349460.9:ENST00000645184.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.6317	4.677505	4.72331	0.0950937	0.0236929	0.189021	0.111208
chr8	70380330	70380430	3995018	0	-	0.4	(0.39,0.419]	chr8	382245	832	INTRON	INTRON	NCOA2	ENSG00000140396.13	ENST00000452400.7:ENST00000518287.6:ENST00000520416.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	327	2	4.65402	4.677465	4.70091	0.00360447	1.28374e-4	0.0385302	0.00329058
chr6	167843397	167843497	3073505	0	+	0.36	(0.33,0.36]	chr6	298792	151	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000400825.8:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400824.8:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.102	4.67746	5.25292	0.0642879	0.0384256	0.184676	0.131324
chr16	16003520	16003620	6406539	0	+	0.51	(0.485,0.523]	chr16	633005	534	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.33772	4.677455	5.01719	0.0480495	0.03818	0.144601	0.140822
chr22	25486427	25486527	7701408	0	+	0.49	(0.485,0.523]	chr22	805972	249	INTRON	INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000686640.1:ENST00000509460.3:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	40	2	4.33772	4.677455	5.01719	0.0480495	0.03818	0.144601	0.140822
chr6	144464361	144464460	3021677	0	+	0.40404	(0.39,0.419]	chr6	295268	11	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8	protein_coding	protein_coding	protein_coding	protein_coding	1	111	2	3.48458	4.6774249999999995	5.87027	0.0266046	0.00198333	0.111446	0.0229039
chr21	43931844	43931944	7625099	0	+	0.44	(0.419,0.45]	chr21	796903	60	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6	protein_coding	protein_coding	protein_coding	protein_coding	1	115	2	3.56008	4.677205000000001	5.79433	0.0250979	0.00262626	0.107672	0.0278348
chr7	141766357	141766457	3509994	0	+	0.35	(0.33,0.36]	chr7	338351	156	INTRON	INTRON	SSBP1	ENSG00000106028.11	ENST00000465582.5	protein_coding	protein_coding	protein_coding	protein_coding	3	338	2	3.40355	4.67699	5.95043	0.0137334	1.02522e-5	0.0800253	5.23031e-4
chr1	243480744	243480844	370442	0	+	0.56	(0.523,0.58]	chr1	41881	45	INTRON	INTRON	SDCCAG8	ENSG00000054282.16	ENST00000366541.8:ENST00000435549.1	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	3.35934	4.676825	5.99431	0.0113252	0.0104033	0.071894	0.0686837
chr1	89852254	89852354	181013	0	+	0.41	(0.39,0.419]	chr1	19585	52	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.55943	4.676724999999999	4.79402	0.104562	0.0208208	0.19835	0.102713
chr11	115416693	115416793	5130256	0	-	0.41	(0.39,0.419]	chr11	498116	168	INTRON	INTRON	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000541434.5:ENST00000543249.1:ENST00000540951.1:ENST00000536781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.55943	4.676724999999999	4.79402	0.104562	0.0208208	0.19835	0.102713
chr2	101802734	101802834	861686	0	+	0.4	(0.39,0.419]	chr2	97540	27	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5:ENST00000627726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.55943	4.676724999999999	4.79402	0.104562	0.0208208	0.19835	0.102713
chr7	105205425	105205520	3666145	0	-	0.4	(0.39,0.419]	chr7	353713	13	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000357311.7:ENST00000489828.5:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.55943	4.676724999999999	4.79402	0.104562	0.0208208	0.19835	0.102713
chrX	72468903	72469001	8063176	0	-	0.397959	(0.39,0.419]	chrX	841379	5	INTRON	INTRON	HDAC8	ENSG00000147099.21	ENST00000373583.6:ENST00000373573.9:ENST00000648850.1:ENST00000648452.1:ENST00000649097.1:ENST00000647886.1:ENST00000648855.1:ENST00000647654.1:ENST00000648939.1:ENST00000648504.1:ENST00000648459.1:ENST00000373589.9:ENST00000650604.1:ENST00000647594.1:ENST00000647980.1:ENST00000647859.1:ENST00000650076.1:ENST00000648731.1:ENST00000649181.1:ENST00000649274.1:ENST00000650471.1:ENST00000647641.1:ENST00000649543.1:ENST00000373568.7:ENST00000648139.1:ENST00000648834.1:ENST00000648711.1:ENST00000436675.6:ENST00000647606.1:ENST00000415409.6:ENST00000478743.2:ENST00000648298.1:ENST00000648870.1:ENST00000649116.1:ENST00000649752.1:ENST00000647718.1:ENST00000649242.1:ENST00000649518.1:ENST00000648285.1:ENST00000412342.6:ENST00000373571.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.55943	4.676724999999999	4.79402	0.104562	0.0208208	0.19835	0.102713
chr17	15534982	15535082	6860792	0	-	0.37	(0.36,0.39]	chr17	695094	40	INTRON	INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	89	2	3.71617	4.676685	5.6372	0.024533	0.00589796	0.106796	0.0477093
chr1	148661273	148661373	583354	0	-	0.4	(0.39,0.419]	chr1	67263	208	INTRON	INTRON	NBPF14	ENSG00000270629.7	ENST00000606877.2	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.63037	4.676565	4.72276	0.0963077	0.0238104	0.189169	0.111436
chr1	157014136	157014236	603887	0	-	0.41	(0.39,0.419]	chr1	71589	276	INTRON	INTRON	ARHGEF11	ENSG00000132694.19	ENST00000368194.8:ENST00000361409.2	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.63037	4.676565	4.72276	0.0963077	0.0238104	0.189169	0.111436
chr14	69102577	69102677	6000680	0	-	0.41	(0.39,0.419]	chr14	588817	103	INTRON	INTRON	DCAF5	ENSG00000139990.18	ENST00000341516.10:ENST00000554215.5:ENST00000556847.5:ENST00000557386.5:ENST00000553293.5:ENST00000556111.1:ENST00000389997.10:ENST00000554681.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.63037	4.676565	4.72276	0.0963077	0.0238104	0.189169	0.111436
chr2	119785970	119786070	883852	0	+	0.36	(0.33,0.36]	chr2	100104	140	INTRON	INTRON	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000460162.1:ENST00000420482.5:ENST00000460289.5:ENST00000488279.6:ENST00000485247.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.57958	4.676565	4.77355	0.0735809	0.0288057	0.17026	0.123764
chr9	123460829	123460926	4397182	0	-	0.412371	(0.39,0.419]	chr9	419644	26	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1:ENST00000479305.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.63037	4.676565	4.72276	0.0963077	0.0238104	0.189169	0.111436
chr11	66628746	66628845	4876901	0	+	0.434343	(0.419,0.45]	chr11	469583	22	UTR3	UTR3:EXON_MRNA:INTRON	RBM14-RBM4:RBM14	ENSG00000248643.5:ENSG00000239306.5	ENST00000412278.2:ENST00000511114.1:ENST00000310137.5:ENST00000421355.1:ENST00000500635.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.47684	4.676410000000001	4.87598	0.0768574	0.0389508	0.174882	0.142578
chr12	4713165	4713265	5163465	0	+	0.45	(0.419,0.45]	chr12	501758	190	INTRON	INTRON	ENSG00000255639	ENSG00000255639.3	ENST00000648836.1:ENST00000543979.1:ENST00000544741.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.47684	4.676410000000001	4.87598	0.0768574	0.0389508	0.174882	0.142578
chr15	34092237	34092336	6215139	0	-	0.444444	(0.419,0.45]	chr15	611862	14	INTRON	INTRON	EMC7	ENSG00000134153.10	ENST00000256545.9:ENST00000527822.5:ENST00000528949.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.47684	4.676410000000001	4.87598	0.0768574	0.0389508	0.174882	0.142578
chr16	57802934	57802985	6597476	0	-	0.431373	(0.419,0.45]	chr16	659785	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KIFC3	ENSG00000140859.16	ENST00000541240.5:ENST00000562984.5:ENST00000567204.5:ENST00000566648.5:ENST00000565684.5:ENST00000567059.5:ENST00000563028.1:ENST00000564891.1:ENST00000565871.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.47684	4.676410000000001	4.87598	0.0768574	0.0389508	0.174882	0.142578
chr3	71422757	71422857	1829676	0	-	0.42	(0.419,0.45]	chr3	188242	621	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000649145.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	90	2	3.62473	4.676335	5.72794	0.0242188	0.00764608	0.106588	0.0563517
chr1	228144667	228144752	358031	0	+	0.6	(0.58,1]	chr1	40402	5	UTR5	UTR5:EXON_MRNA:INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5:ENST00000366718.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	78	2	3.75733	4.6759	5.59447	0.0117666	0.0033279	0.0737098	0.0325742
chr20	381330	381415	7414312	0	+	0.729412	(0.58,1]	chr20	772271	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	TRIB3	ENSG00000101255.12	ENST00000615226.4:ENST00000217233.9:ENST00000449710.5:ENST00000422053.3	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	3.75733	4.6759	5.59447	0.0117666	0.0033279	0.0737098	0.0325742
chr3	13204025	13204125	1691182	0	-	0.66	(0.58,1]	chr3	176566	395	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	3.75733	4.6759	5.59447	0.0117666	0.0033279	0.0737098	0.0325742
chr12	120983069	120983168	5340961	0	+	0.555556	(0.523,0.58]	chr12	521546	36	INTRON	INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000400024.6:ENST00000560968.5:ENST00000402929.5:ENST00000535955.5:ENST00000538626.2:ENST00000538646.5:ENST00000541924.5:ENST00000544574.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	103	2	3.37594	4.67587	5.9758	0.0272868	9.36996e-4	0.112327	0.0135546
chr5	1498087	1498187	2609720	0	-	0.38	(0.36,0.39]	chr5	259859	28	INTRON	INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000514484.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	41	2	4.30212	4.675805	5.04949	0.0563927	0.0494303	0.160725	0.154188
chr9	133734203	133734303	4427925	0	-	0.62	(0.58,1]	chr9	423134	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000427237.6:ENST00000298628.6	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	3.68463	4.6758049999999995	5.66698	0.0102927	0.00404771	0.0684871	0.0371291
chr18	28139884	28139983	7140273	0	-	0.454545	(0.45,0.485]	chr18	726157	423	INTRON	INTRON	CDH2	ENSG00000170558.10	ENST00000269141.8:ENST00000676445.1:ENST00000675708.1:ENST00000430882.6:ENST00000413878.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	108	2	3.55856	4.675235	5.79191	0.0213798	0.00183113	0.100177	0.0216571
chr7	152055505	152055605	3516814	0	+	0.37	(0.36,0.39]	chr7	339618	274	INTRON	INTRON	GALNT11	ENSG00000178234.13	ENST00000430044.7:ENST00000482812.1:ENST00000431668.1:ENST00000446096.5:ENST00000447778.5:ENST00000423337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	42	2	4.20082	4.6752	5.14958	0.0581116	0.0493212	0.175217	0.146207
chr9	78297670	78297770	4172937	0	+	0.53	(0.523,0.58]	chr9	396767	4	SS5_PROX	SS5_PROX:INTRON	PSAT1	ENSG00000135069.14	ENST00000376588.4:ENST00000347159.6	protein_coding	protein_coding	protein_coding	protein_coding	3	186	2	4.18058	4.675135	5.16969	0.0387762	1.94001e-4	0.131324	0.00442806
chr6	36679139	36679239	2906380	0	+	0.69	(0.58,1]	chr6	285234	2	SS5_PROX	SS5_PROX:INTRON	CDKN1A	ENSG00000124762.14	ENST00000615513.4:ENST00000448526.6:ENST00000459970.1:ENST00000405375.5:ENST00000244741.10:ENST00000373711.3:ENST00000478800.1:ENST00000462537.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	125	2	3.06099	4.675065	6.28914	0.00372067	0.00303562	0.0350519	0.0350226
chr16	85399432	85399532	6517065	0	+	0.56	(0.523,0.58]	chr16	646391	401	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	3.44013	4.675050000000001	5.90997	0.012016	0.00938609	0.0743424	0.064735
chr9	88396908	88397008	4177747	0	+	0.4	(0.39,0.419]	chr9	397315	71	INTRON	INTRON	SPIN1	ENSG00000106723.17	ENST00000485804.5:ENST00000469017.6:ENST00000375859.4:ENST00000462844.5:ENST00000485565.6:ENST00000483785.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	89	2	3.71423	4.67504	5.63585	0.025023	0.00594315	0.10758	0.0479866
chr15	85132747	85132847	6176133	0	+	0.41	(0.39,0.419]	chr15	607499	60	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000560789.5:ENST00000561024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.30157	4.67486	5.04815	0.0572698	0.0496288	0.160725	0.154343
chr8	36136457	36136557	3799213	0	+	0.4	(0.39,0.419]	chr8	365408	916	INTRON	INTRON	ENSG00000253452	ENSG00000253452.6	ENST00000662333.1:ENST00000659919.1	lncRNA	lncRNA	lncRNA	lncRNA	0	41	2	4.30157	4.67486	5.04815	0.0572698	0.0496288	0.160725	0.154343
chr1	2160602	2160701	4231	0	+	0.636364	(0.58,1]	chr1	988	40	INTRON	INTRON	PRKCZ	ENSG00000067606.17	ENST00000378567.8:ENST00000400921.6:ENST00000461106.6:ENST00000479263.5:ENST00000478770.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.18518	4.674855	5.16453	0.0374658	0.0249802	0.139793	0.10758
chr16	920062	920162	6531224	0	-	0.64	(0.58,1]	chr16	648677	86	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000566627.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.18518	4.674855	5.16453	0.0374658	0.0249802	0.139793	0.10758
chr17	43569000	43569099	6739255	0	+	0.545455	(0.523,0.58]	chr17	678633	238	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	84	2	3.69181	4.67465	5.65749	0.0182707	0.00510333	0.0921579	0.0433857
chr2	24325860	24325960	1104406	0	-	0.38	(0.36,0.39]	chr2	120613	36	INTRON	INTRON	ITSN2	ENSG00000198399.16	ENST00000355123.9:ENST00000361999.7:ENST00000406921.7:ENST00000412011.5:ENST00000443927.5:ENST00000407704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	90	2	3.85704	4.67464	5.49224	0.0304242	0.00420937	0.11845	0.0380601
chr10	45857192	45857292	4678141	0	-	0.58	(0.523,0.58]	chr10	446183	19	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000610690.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	1	84	2	3.62427	4.67457	5.72487	0.0163679	0.0060311	0.0875379	0.0484641
chr16	58161409	58161507	6598354	0	-	0.336735	(0.33,0.36]	chr16	659848	20	EXON_MRNA	EXON_MRNA:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	315	2	4.64943	4.67446	4.69949	0.00312227	1.12783e-4	0.0356998	0.00299754
chr20	36855585	36855685	7557057	0	-	0.61	(0.58,1]	chr20	789155	158	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	3.64686	4.674385	5.70191	0.00964351	0.00447535	0.0659937	0.0398484
chr22	32803320	32803420	7717642	0	+	0.68	(0.58,1]	chr22	807776	8	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	2	162	2	3.88969	4.674205	5.45872	0.00311807	0.00211999	0.0356998	0.0239744
chr10	79112520	79112620	4532480	0	+	0.56	(0.523,0.58]	chr10	432420	429	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.13061	4.67394	5.21727	0.0533354	0.0361597	0.167062	0.127853
chr11	12748392	12748492	4802384	0	+	0.56	(0.523,0.58]	chr11	460555	725	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000527376.3:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.13061	4.67394	5.21727	0.0533354	0.0361597	0.167062	0.127853
chr13	98532397	98532497	5747845	0	-	0.58	(0.523,0.58]	chr13	563357	105	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.13061	4.67394	5.21727	0.0533354	0.0361597	0.167062	0.127853
chr2	113197194	113197286	879524	0	+	0.543478	(0.523,0.58]	chr2	99508	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PSD4	ENSG00000125637.16	ENST00000245796.11:ENST00000418251.6:ENST00000441564.7:ENST00000409656.5:ENST00000487574.1:ENST00000409378.1:ENST00000460725.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	42	2	4.13061	4.67394	5.21727	0.0533354	0.0361597	0.167062	0.127853
chr3	133763781	133763881	1572367	0	+	0.55	(0.523,0.58]	chr3	166740	2	SS3_PROX	SS3_PROX:INTRON	TF	ENSG00000091513.16	ENST00000402696.9	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.13061	4.67394	5.21727	0.0533354	0.0361597	0.167062	0.127853
chr2	11585565	11585661	720734	0	+	0.5	(0.485,0.523]	chr2	84146	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000263834.9:ENST00000381483.6:ENST00000234142.9	protein_coding	protein_coding	protein_coding	protein_coding	2	114	2	3.05773	4.673895	6.29006	0.00856934	0.00613935	0.0612055	0.0517628
chr1	165898304	165898404	263192	0	+	0.38	(0.36,0.39]	chr1	31080	3	SS5_PROX	SS5_PROX:INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1:ENST00000462329.5:ENST00000464197.5:ENST00000469256.6:ENST00000470820.1:ENST00000463772.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.64834	4.673830000000001	4.69932	0.0877431	0.0272056	0.183437	0.119337
chr5	60322508	60322608	2677378	0	-	0.39	(0.36,0.39]	chr5	264422	185	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000502484.6:ENST00000509355.5:ENST00000506024.5:ENST00000506510.6:ENST00000511382.1:ENST00000505507.6:ENST00000514552.5:ENST00000515835.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.64834	4.673830000000001	4.69932	0.0877431	0.0272056	0.183437	0.119337
chr5	150029074	150029171	2564139	0	+	0.360825	(0.36,0.39]	chr5	254732	16	INTRON	INTRON	HMGXB3	ENSG00000113716.13	ENST00000613459.4:ENST00000503427.5:ENST00000502717.6:ENST00000514469.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.64834	4.673830000000001	4.69932	0.0877431	0.0272056	0.183437	0.119337
chr1	214007059	214007158	339549	0	+	0.424242	(0.419,0.45]	chr1	38103	14	INTRON	INTRON	PROX1	ENSG00000117707.16	ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2	protein_coding	protein_coding	protein_coding	protein_coding	3	146	2	2.95973	4.673685	6.38764	0.00863623	0.00800763	0.0623824	0.0580954
chr8	128058412	128058511	3920471	0	+	0.272727	[0,0.29]	chr8	374338	83	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1:ENST00000660781.1:ENST00000660912.1:ENST00000650930.1:ENST00000663715.1:ENST00000652883.1:ENST00000657844.1:ENST00000660659.1:ENST00000661391.1:ENST00000660146.1:ENST00000671587.1:ENST00000658018.1:ENST00000666878.1:ENST00000652993.1:ENST00000658305.1:ENST00000656077.1:ENST00000666039.1:ENST00000668619.1:ENST00000668479.1:ENST00000660069.1:ENST00000658158.1:ENST00000652728.1:ENST00000653608.1:ENST00000669509.1:ENST00000522414.2:ENST00000670535.1:ENST00000670009.1:ENST00000668215.1:ENST00000668351.1:ENST00000657682.1:ENST00000657945.1:ENST00000658065.1:ENST00000655148.1:ENST00000666223.1:ENST00000666105.1:ENST00000668480.1	lncRNA	lncRNA	lncRNA	lncRNA	1	105	2	2.62751	4.673665	6.71982	0.0743497	8.81406e-5	0.171851	0.00248664
chr9	37971126	37971226	4302797	0	-	0.54	(0.523,0.58]	chr9	411604	147	INTRON	INTRON	SHB	ENSG00000107338.10	ENST00000377707.4	protein_coding	protein_coding	protein_coding	protein_coding	2	113	2	3.12569	4.67348	6.22127	0.00713962	0.00699217	0.0555241	0.0541241
chr3	12642685	12642784	1687780	0	-	0.575758	(0.523,0.58]	chr3	176403	131	INTRON	INTRON	RAF1	ENSG00000132155.14	ENST00000688543.1:ENST00000685348.1:ENST00000251849.9:ENST00000442415.7:ENST00000688444.1:ENST00000692093.1:ENST00000691724.1:ENST00000423275.6:ENST00000687326.1:ENST00000688803.1:ENST00000689876.1:ENST00000686455.1:ENST00000684903.1:ENST00000693312.1:ENST00000690460.1:ENST00000692773.1:ENST00000688625.1:ENST00000693664.1:ENST00000686762.1:ENST00000692311.1:ENST00000692558.1:ENST00000691779.1:ENST00000685738.1:ENST00000690397.1:ENST00000687923.1:ENST00000688269.1:ENST00000693705.1:ENST00000689097.1:ENST00000691899.1:ENST00000689914.1:ENST00000690625.1:ENST00000689389.1:ENST00000687257.1:ENST00000686409.1:ENST00000685653.1:ENST00000689540.1:ENST00000691396.1:ENST00000685437.1:ENST00000689418.1:ENST00000687940.1:ENST00000689481.1:ENST00000491290.2:ENST00000686479.1:ENST00000689033.1:ENST00000692777.1:ENST00000689226.1:ENST00000691718.1:ENST00000692959.1:ENST00000685740.1:ENST00000688753.1:ENST00000688779.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	105	2	3.53814	4.673435	5.80873	0.020829	0.00145893	0.0990379	0.0184991
chr16	16155682	16155776	6556408	0	-	0.414894	(0.39,0.419]	chr16	653054	8	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6:ENST00000576204.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	144	2	2.99201	4.6731	6.35419	0.0079671	0.00708733	0.0596361	0.0540942
chr5	59901923	59902023	2673162	0	-	0.46	(0.45,0.485]	chr5	264378	83	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000502484.6:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.50852	4.6730350000000005	4.83755	0.06646	0.0302873	0.162385	0.126768
chr5	73869194	73869287	2454146	0	+	0.473118	(0.45,0.485]	chr5	245036	6	INTRON	INTRON	ARHGEF28	ENSG00000214944.10	ENST00000545377.5:ENST00000296794.10:ENST00000513042.7:ENST00000426542.6:ENST00000437974.5:ENST00000296799.8	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.50852	4.6730350000000005	4.83755	0.06646	0.0302873	0.162385	0.126768
chr10	116725926	116726026	4766136	0	-	0.41	(0.39,0.419]	chr10	455790	178	INTRON	INTRON	HSPA12A	ENSG00000165868.16	ENST00000635765.1:ENST00000369209.8:ENST00000674197.1:ENST00000674401.1:ENST00000674505.1:ENST00000674167.1:ENST00000674205.1:ENST00000674394.1:ENST00000674347.1:ENST00000674459.1:ENST00000674344.1:ENST00000674491.1:ENST00000674372.1:ENST00000674375.1:ENST00000481291.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.64779	4.672885	4.69798	0.088901	0.0273358	0.183874	0.119337
chr7	47366171	47366270	3587453	0	-	0.40404	(0.39,0.419]	chr7	346030	195	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.64779	4.672885	4.69798	0.088901	0.0273358	0.183874	0.119337
chr18	76436648	76436747	7179486	0	-	0.59596	(0.58,1]	chr18	730080	560	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	2	196	2	4.53036	4.67253	4.8147	0.00203497	1.38991e-4	0.0283511	0.00348143
chr10	79157756	79157856	4532934	0	+	0.59	(0.58,1]	chr10	432432	176	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.3962	4.672510000000001	4.94882	0.0354433	0.0250928	0.127188	0.114418
chr11	70630029	70630129	5060573	0	-	0.61	(0.58,1]	chr11	492663	1267	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.3962	4.672510000000001	4.94882	0.0354433	0.0250928	0.127188	0.114418
chr5	1104002	1104102	2608891	0	-	0.74	(0.58,1]	chr5	259667	94	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.3962	4.672510000000001	4.94882	0.0354433	0.0250928	0.127188	0.114418
chr8	43100268	43100368	3811233	0	+	0.6	(0.58,1]	chr8	367068	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000331373.10:ENST00000674727.1:ENST00000518991.6:ENST00000676163.1:ENST00000675129.1:ENST00000675791.1:ENST00000675013.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.3962	4.672510000000001	4.94882	0.0354433	0.0250928	0.127188	0.114418
chr9	131584896	131584996	4418965	0	-	0.61	(0.58,1]	chr9	421908	3	SS3_PROX	SS3_PROX:INTRON	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000372189.7:ENST00000683357.1:ENST00000372190.7	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.3962	4.672510000000001	4.94882	0.0354433	0.0250928	0.127188	0.114418
chr11	68558287	68558380	4884472	0	+	0.483871	(0.45,0.485]	chr11	470762	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	PPP6R3	ENSG00000110075.15	ENST00000534534.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000531432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	239	2	4.62613	4.67244	4.71875	0.00265601	4.64649e-4	0.0326771	0.00826915
chr8	30446642	30446742	3788789	0	+	0.51	(0.485,0.523]	chr8	364900	3	SS3_PROX	SS3_PROX:INTRON	RBPMS	ENSG00000157110.16	ENST00000320203.8:ENST00000339877.8:ENST00000287771.9:ENST00000397323.9:ENST00000517860.5:ENST00000520161.5:ENST00000523115.5:ENST00000519647.5:ENST00000521816.1:ENST00000520191.5:ENST00000523717.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	102	2	2.7365	4.672395	6.60829	0.0423471	0.00342137	0.149195	0.0374749
chr16	12170316	12170416	6391571	0	+	0.59	(0.58,1]	chr16	631959	347	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	3.60807	4.672045	5.73602	0.00904546	0.00495688	0.0637469	0.0425347
chr6	31670460	31670558	2893770	0	+	0.602041	(0.58,1]	chr6	282714	4	UTR5	UTR5:EXON_MRNA	LY6G5B	ENSG00000240053.8	ENST00000375864.4:ENST00000409525.1	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	3.60807	4.672045	5.73602	0.00904546	0.00495688	0.0637469	0.0425347
chr1	6030330	6030428	6739	0	+	0.561224	(0.523,0.58]	chr1	1420	25	INTRON	INTRON	KCNAB2	ENSG00000069424.16	ENST00000655548.1:ENST00000378111.6:ENST00000378097.6:ENST00000666163.1:ENST00000671676.1:ENST00000658883.1:ENST00000658691.1:ENST00000435937.6:ENST00000445501.6:ENST00000478098.5:ENST00000653262.1:ENST00000668706.1:ENST00000389632.9:ENST00000654144.1:ENST00000341524.6:ENST00000462676.3:ENST00000428161.6:ENST00000352527.6:ENST00000663169.1:ENST00000653635.1:ENST00000661248.1:ENST00000656198.1:ENST00000602612.5:ENST00000481789.2:ENST00000656746.1:ENST00000665338.1:ENST00000666299.1:ENST00000652845.1:ENST00000655703.1:ENST00000669250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.58058	4.67174	4.7629	0.0860403	0.0167014	0.181766	0.0917029
chr19	23323279	23323378	7358016	0	-	0.555556	(0.523,0.58]	chr19	762771	128	INTRON	INTRON	ZNF91	ENSG00000167232.14	ENST00000596528.1:ENST00000596989.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	38	2	4.58058	4.67174	4.7629	0.0860403	0.0167014	0.181766	0.0917029
chrX	2383959	2384059	7967683	0	-	0.53	(0.523,0.58]	chrX	834355	456	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.58058	4.67174	4.7629	0.0860403	0.0167014	0.181766	0.0917029
chr12	132546108	132546207	5353077	0	+	0.585859	(0.58,1]	chr12	523670	178	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.58025	4.671545	4.76284	0.0471737	0.0172566	0.143232	0.0923809
chr13	113328285	113328385	5753213	0	-	0.64	(0.58,1]	chr13	564094	18	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.58025	4.671545	4.76284	0.0471737	0.0172566	0.143232	0.0923809
chr16	73023802	73023902	6627647	0	-	0.6	(0.58,1]	chr16	663549	178	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2:ENST00000397992.5:ENST00000268489.10	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.58025	4.671545	4.76284	0.0471737	0.0172566	0.143232	0.0923809
chr2	10188906	10189006	718190	0	+	0.63	(0.58,1]	chr2	84002	328	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	37	2	4.58025	4.671545	4.76284	0.0471737	0.0172566	0.143232	0.0923809
chr21	45457779	45457879	7630842	0	+	0.63	(0.58,1]	chr21	797662	5	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.58025	4.671545	4.76284	0.0471737	0.0172566	0.143232	0.0923809
chr7	30160794	30160892	3338878	0	+	0.632653	(0.58,1]	chr7	323119	34	UTR3	UTR3:EXON_MRNA	MTURN	ENSG00000180354.16	ENST00000324453.13:ENST00000324489.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.58025	4.671545	4.76284	0.0471737	0.0172566	0.143232	0.0923809
chr9	133849402	133849502	4428892	0	-	0.72	(0.58,1]	chr9	423304	147	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.58025	4.671545	4.76284	0.0471737	0.0172566	0.143232	0.0923809
chr9	134370572	134370672	4261129	0	+	0.63	(0.58,1]	chr9	406311	436	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.58025	4.671545	4.76284	0.0471737	0.0172566	0.143232	0.0923809
chr9	134413683	134413782	4261570	0	+	0.656566	(0.58,1]	chr9	406352	42	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000481739.2:ENST00000356384.4:ENST00000672570.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.58025	4.671545	4.76284	0.0471737	0.0172566	0.143232	0.0923809
chr20	319613	319712	7511636	0	-	0.383838	(0.36,0.39]	chr20	783975	29	EXON_LNCRNA	EXON_LNCRNA	NRSN2-AS1	ENSG00000225377.6	ENST00000657126.1:ENST00000414676.6	lncRNA	lncRNA	lncRNA	lncRNA	1	93	2	3.14223	4.67154	6.20085	0.0209989	0.0100561	0.103249	0.0677306
chr10	18568859	18568959	4642417	0	-	0.4	(0.39,0.419]	chr10	443321	165	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	108	2	3.25813	4.67127	6.08441	0.0377191	0.00116356	0.131324	0.0157899
chr22	15818173	15818273	7682905	0	+	0.55	(0.523,0.58]	chr22	803565	2	SS3_PROX	SS3_PROX:INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000383038.7:ENST00000447898.5	lncRNA	lncRNA	lncRNA	lncRNA	2	113	2	3.09806	4.67124	6.24442	0.00764666	0.00670944	0.0563517	0.0541591
chr11	70789148	70789248	5062173	0	-	0.49	(0.485,0.523]	chr11	492701	713	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	108	2	3.68616	4.671085	5.65601	0.0161133	0.00224147	0.0870535	0.024843
chr21	33236946	33237046	7609138	0	+	0.4	(0.39,0.419]	chr21	794612	60	INTRON	INTRON	IFNAR2	ENSG00000159110.21	ENST00000683941.1:ENST00000382264.7:ENST00000342136.9:ENST00000404220.7:ENST00000420068.1:ENST00000342101.7:ENST00000382238.6:ENST00000413881.5:ENST00000443073.5:ENST00000447980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	148	2	2.55645	4.6710650000000005	6.78568	0.019458	0.00378521	0.099646	0.0396337
chr1	25244993	25245092	427676	0	-	0.313131	(0.29,0.33]	chr1	50554	6	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RSRP1	ENSG00000117616.18	ENST00000243189.12:ENST00000498238.1:ENST00000568254.5:ENST00000565733.5:ENST00000566395.5:ENST00000473314.6:ENST00000570063.5:ENST00000475766.2:ENST00000491378.1:ENST00000431849.3:ENST00000568212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.58769	4.670905	4.75412	0.0806047	0.0180435	0.177452	0.0952934
chr12	11056004	11056103	5371460	0	-	0.313131	(0.29,0.33]	chr12	526854	69	INTRON	INTRON	ENSG00000275778:PRH1:TAS2R14	ENSG00000275778.2:ENSG00000231887.8:ENSG00000212127.6	ENST00000536668.2:ENST00000535024.6:ENST00000541977.5:ENST00000381852.4:ENST00000546265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.58769	4.670905	4.75412	0.0806047	0.0180435	0.177452	0.0952934
chr6	131015528	131015623	3261718	0	-	0.326316	(0.29,0.33]	chr6	315596	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000392427.7:ENST00000368128.6:ENST00000527411.5:ENST00000525271.5:ENST00000528179.5:ENST00000526333.1:ENST00000526983.1:ENST00000530707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.58769	4.670905	4.75412	0.0806047	0.0180435	0.177452	0.0952934
chr22	46649318	46649417	7744671	0	+	0.676768	(0.58,1]	chr22	812052	110	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	1	81	2	3.30273	4.67083	6.03893	0.0107069	0.00503456	0.0700635	0.0464858
chr1	61441180	61441277	149712	0	+	0.350515	(0.33,0.36]	chr1	17241	13	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000407417.7:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1:ENST00000657234.1:ENST00000655770.1:ENST00000357977.5:ENST00000493627.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	91	2	3.1778	4.6705499999999995	6.1633	0.0187975	0.00914439	0.0980631	0.0642449
chr19	39157150	39157250	7259580	0	+	0.58	(0.523,0.58]	chr19	744160	3	SS5_PROX	SS5_PROX:INTRON	PAK4	ENSG00000130669.17	ENST00000602004.1:ENST00000599470.5:ENST00000360442.8:ENST00000321944.8:ENST00000593480.5:ENST00000358301.7:ENST00000593690.5:ENST00000599386.5:ENST00000599657.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.43597	4.670485	4.905	0.0563605	0.0313935	0.154188	0.127822
chr20	58689442	58689541	7498572	0	+	0.545455	(0.523,0.58]	chr20	781977	101	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1:ENST00000413559.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	0	39	2	4.43597	4.670485	4.905	0.0563605	0.0313935	0.154188	0.127822
chr20	63210974	63211074	7585874	0	-	0.56	(0.523,0.58]	chr20	792947	68	INTRON	INTRON	YTHDF1	ENSG00000149658.18	ENST00000370339.8:ENST00000370334.4	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.43597	4.670485	4.905	0.0563605	0.0313935	0.154188	0.127822
chr9	134358396	134358496	4261007	0	+	0.58	(0.523,0.58]	chr9	406311	314	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.43597	4.670485	4.905	0.0563605	0.0313935	0.154188	0.127822
chr16	32772585	32772684	6442273	0	+	0.50505	(0.485,0.523]	chr16	638922	11	INTRON	INTRON	HERC2P5	ENSG00000260644.6	ENST00000562687.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	0	38	2	4.581	4.670195	4.75939	0.085711	0.0172254	0.181766	0.0923809
chr2	232899376	232899475	1383832	0	-	0.515152	(0.485,0.523]	chr2	147952	41	INTRON	INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000416114.3:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.581	4.670195	4.75939	0.085711	0.0172254	0.181766	0.0923809
chr6	668346	668446	3078850	0	-	0.49	(0.485,0.523]	chr6	299429	107	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9:ENST00000443083.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.581	4.670195	4.75939	0.085711	0.0172254	0.181766	0.0923809
chr9	124895658	124895757	4405601	0	-	0.515152	(0.485,0.523]	chr9	419967	48	INTRON	INTRON	GOLGA1	ENSG00000136935.14	ENST00000373555.9:ENST00000475407.5:ENST00000485337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.581	4.670195	4.75939	0.085711	0.0172254	0.181766	0.0923809
chrX	1448177	1448276	7965975	0	-	0.50505	(0.485,0.523]	chrX	834314	55	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9:ENST00000474865.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.581	4.670195	4.75939	0.085711	0.0172254	0.181766	0.0923809
chr13	97338029	97338129	5631964	0	+	0.41	(0.39,0.419]	chr13	553188	32	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	99	2	4.2918	4.669975	5.04815	0.0572698	0.00141198	0.154343	0.0180814
chr12	3109392	3109492	5158864	0	+	0.45	(0.419,0.45]	chr12	501337	253	INTRON	INTRON	TSPAN9	ENSG00000011105.14	ENST00000537971.5:ENST00000444315.6:ENST00000011898.10:ENST00000649909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	164	2	2.18148	4.669765	7.15805	0.043587	0.0023114	0.152811	0.0302623
chr10	69237264	69237363	4502653	0	+	0.313131	(0.29,0.33]	chr10	430711	38	INTRON	INTRON	HKDC1	ENSG00000156510.13	ENST00000354624.6	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.42727	4.66972	4.91217	0.0522244	0.0335282	0.148503	0.133139
chr14	54757280	54757379	5821360	0	+	0.323232	(0.29,0.33]	chr14	569119	20	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555192.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.42727	4.66972	4.91217	0.0522244	0.0335282	0.148503	0.133139
chr3	60699707	60699807	1800607	0	-	0.32	(0.29,0.33]	chr3	186816	91	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5:ENST00000490952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.42727	4.66972	4.91217	0.0522244	0.0335282	0.148503	0.133139
chr7	129832686	129832784	3706520	0	-	0.306122	(0.29,0.33]	chr7	356184	21	UTR3	UTR3:EXON_MRNA	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.42727	4.66972	4.91217	0.0522244	0.0335282	0.148503	0.133139
chr14	71006154	71006253	5874211	0	+	0.525253	(0.523,0.58]	chr14	573469	99	INTRON	INTRON	PCNX1	ENSG00000100731.16	ENST00000554879.5:ENST00000304743.7:ENST00000439984.7:ENST00000556846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.65157	4.66971	4.68785	0.0787008	0.0194172	0.175203	0.0994526
chr17	44429578	44429678	6912111	0	-	0.54	(0.523,0.58]	chr17	703814	47	INTRON	INTRON	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000335500.8:ENST00000635257.1:ENST00000587228.5:ENST00000585614.1:ENST00000590041.5:ENST00000586265.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.65157	4.66971	4.68785	0.0787008	0.0194172	0.175203	0.0994526
chr2	216089977	216090076	1023138	0	+	0.535354	(0.523,0.58]	chr2	111522	74	INTRON	INTRON	TMEM169	ENSG00000163449.11	ENST00000454545.5:ENST00000433112.5:ENST00000295658.8:ENST00000437356.7:ENST00000406027.2:ENST00000455479.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.65157	4.66971	4.68785	0.0787008	0.0194172	0.175203	0.0994526
chr9	123677089	123677189	4399358	0	-	0.53	(0.523,0.58]	chr9	419703	3	SS3_PROX	SS3_PROX:INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1:ENST00000474676.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.65157	4.66971	4.68785	0.0787008	0.0194172	0.175203	0.0994526
chr9	134327957	134328057	4260702	0	+	0.56	(0.523,0.58]	chr9	406311	9	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.65157	4.66971	4.68785	0.0787008	0.0194172	0.175203	0.0994526
chr11	70945810	70945910	5063749	0	-	0.52	(0.485,0.523]	chr11	492740	489	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000618363.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	85	2	3.4289	4.66965	5.9104	0.0119344	0.00977282	0.0741726	0.0664239
chr3	146080447	146080546	1936176	0	-	0.373737	(0.36,0.39]	chr3	196963	8	INTRON	INTRON	PLOD2	ENSG00000152952.12	ENST00000282903.10:ENST00000461497.5:ENST00000360060.7:ENST00000494950.5:ENST00000478436.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.39677	4.6693549999999995	4.94194	0.064883	0.0422707	0.162218	0.149195
chr16	89436718	89436818	6661201	0	-	0.3	(0.29,0.33]	chr16	666753	50	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.51301	4.669225000000001	4.82544	0.0885563	0.0156279	0.183874	0.0877396
chr14	104776959	104777054	6057658	0	-	0.610526	(0.58,1]	chr14	594698	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000557552.1:ENST00000683722.1:ENST00000555528.5:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000544168.5:ENST00000554848.5:ENST00000682269.1:ENST00000555380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	78	2	3.85993	4.66916	5.47839	0.0145198	0.00251049	0.0823104	0.026941
chr16	89298867	89298964	6659794	0	-	0.412371	(0.39,0.419]	chr16	666649	1	UTR3	UTR3:EXON_MRNA:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	134	2	3.88573	4.668985	5.45224	0.032783	0.00126463	0.122593	0.0167725
chr1	78134793	78134892	165156	0	+	0.494949	(0.485,0.523]	chr1	18816	85	INTRON	INTRON	GIPC2	ENSG00000137960.6	ENST00000370759.4	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.43249	4.668955	4.90542	0.0561086	0.0322299	0.154188	0.12988
chr10	100998410	100998510	4570105	0	+	0.52	(0.485,0.523]	chr10	436336	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LZTS2	ENSG00000107816.17	ENST00000426584.5:ENST00000370223.7:ENST00000489526.1:ENST00000429732.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.43249	4.668955	4.90542	0.0561086	0.0322299	0.154188	0.12988
chr16	72974331	72974431	6627151	0	-	0.49	(0.485,0.523]	chr16	663547	6	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2:ENST00000397992.5:ENST00000268489.10	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.43249	4.668955	4.90542	0.0561086	0.0322299	0.154188	0.12988
chr18	13051356	13051452	7021954	0	+	0.510417	(0.485,0.523]	chr18	717342	11	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5:ENST00000511820.6:ENST00000510237.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.43249	4.668955	4.90542	0.0561086	0.0322299	0.154188	0.12988
chr2	158518084	158518184	935561	0	+	0.51	(0.485,0.523]	chr2	103367	594	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.43249	4.668955	4.90542	0.0561086	0.0322299	0.154188	0.12988
chr17	17821919	17822019	6865740	0	-	0.48	(0.45,0.485]	chr17	695915	10	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	119	2	2.83043	4.66891	6.50739	0.0153861	0.00482293	0.0869771	0.0453395
chr12	772860	772960	5148828	0	+	0.33	(0.29,0.33]	chr12	500570	182	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.65868	4.66888	4.67908	0.0735584	0.0209202	0.17026	0.102931
chr12	118332936	118333036	5518305	0	-	0.32	(0.29,0.33]	chr12	543278	354	INTRON	INTRON	TAOK3	ENSG00000135090.14	ENST00000392533.8:ENST00000419821.6:ENST00000541186.5:ENST00000541878.5:ENST00000542902.5:ENST00000542532.5:ENST00000541786.5:ENST00000539872.5:ENST00000542692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.65868	4.66888	4.67908	0.0735584	0.0209202	0.17026	0.102931
chr3	28278238	28278338	1432614	0	+	0.31	(0.29,0.33]	chr3	152954	145	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2:ENST00000396610.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.65868	4.66888	4.67908	0.0735584	0.0209202	0.17026	0.102931
chr6	142313938	142314038	3011997	0	+	0.33	(0.29,0.33]	chr6	294688	39	INTRON	INTRON	ADGRG6	ENSG00000112414.15	ENST00000230173.10:ENST00000367608.6:ENST00000415128.6:ENST00000296932.13:ENST00000367609.8:ENST00000541199.5:ENST00000545477.1:ENST00000435011.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.65868	4.66888	4.67908	0.0735584	0.0209202	0.17026	0.102931
chr6	159680105	159680204	3300259	0	-	0.292929	(0.29,0.33]	chr6	319489	112	UTR3	UTR3:EXON_MRNA:INTRON	SOD2	ENSG00000112096.19	ENST00000538183.7:ENST00000546260.5:ENST00000367055.8:ENST00000367054.6:ENST00000546087.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.65868	4.66888	4.67908	0.0735584	0.0209202	0.17026	0.102931
chr7	47350639	47350738	3587297	0	-	0.545455	(0.523,0.58]	chr7	346030	39	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	84	2	3.78755	4.668835	5.55012	0.0217068	0.00401039	0.100615	0.0371192
chr20	25511140	25511240	7540070	0	-	0.52	(0.485,0.523]	chr20	787053	4	SS3_PROX	SS3_PROX:INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5	protein_coding	protein_coding	protein_coding	protein_coding	2	115	2	3.51668	4.6687449999999995	5.82081	0.0138807	0.00264036	0.0804838	0.0279436
chr11	129191582	129191682	5143960	0	-	0.45	(0.419,0.45]	chr11	499898	1	SS5_PROX	SS5_PROX:INTRON	ARHGAP32	ENSG00000134909.19	ENST00000682385.1:ENST00000310343.13:ENST00000525234.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.62273	4.668615	4.7145	0.103601	0.0256236	0.197541	0.115966
chr15	28245480	28245580	6207441	0	-	0.43	(0.419,0.45]	chr15	611181	2	SS5_PROX	SS5_PROX:INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.62273	4.668615	4.7145	0.103601	0.0256236	0.197541	0.115966
chr2	161217239	161217338	938679	0	+	0.444444	(0.419,0.45]	chr2	103669	4	INTRON	INTRON	TANK	ENSG00000136560.14	ENST00000259075.6:ENST00000432002.5:ENST00000429217.5:ENST00000406287.5:ENST00000402568.5:ENST00000457887.5:ENST00000392749.7:ENST00000432692.6:ENST00000405852.5:ENST00000456358.5:ENST00000468831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.62273	4.668615	4.7145	0.103601	0.0256236	0.197541	0.115966
chr22	40084269	40084369	7726557	0	+	0.42	(0.419,0.45]	chr22	809581	383	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000441751.5:ENST00000402203.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.62273	4.668615	4.7145	0.103601	0.0256236	0.197541	0.115966
chr7	137889689	137889789	3719590	0	-	0.42	(0.419,0.45]	chr7	357252	38	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.62273	4.668615	4.7145	0.103601	0.0256236	0.197541	0.115966
chr8	18912732	18912832	3951124	0	-	0.42	(0.419,0.45]	chr8	377294	258	INTRON	INTRON	PSD3	ENSG00000156011.18	ENST00000327040.13:ENST00000440756.4	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.62273	4.668615	4.7145	0.103601	0.0256236	0.197541	0.115966
chr13	97337531	97337631	5631959	0	+	0.5	(0.485,0.523]	chr13	553188	27	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.50634	4.6685300000000005	4.83072	0.0939553	0.0148956	0.188571	0.0847741
chr17	17717930	17718030	6689214	0	+	0.49	(0.485,0.523]	chr17	671338	330	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.50634	4.6685300000000005	4.83072	0.0939553	0.0148956	0.188571	0.0847741
chr19	5613265	5613364	7317523	0	-	0.515152	(0.485,0.523]	chr19	755472	3	SS5_PROX	SS5_PROX:INTRON	SAFB2	ENSG00000130254.12	ENST00000252542.9:ENST00000591123.5:ENST00000591120.1:ENST00000590262.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.50634	4.6685300000000005	4.83072	0.0939553	0.0148956	0.188571	0.0847741
chr3	179570741	179570837	1636281	0	+	0.510417	(0.485,0.523]	chr3	171215	1	INTRON	INTRON	ACTL6A	ENSG00000136518.17	ENST00000450518.6:ENST00000392662.5:ENST00000468767.6:ENST00000429709.7:ENST00000494843.5:ENST00000487978.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.50634	4.6685300000000005	4.83072	0.0939553	0.0148956	0.188571	0.0847741
chr7	47536590	47536689	3589180	0	-	0.50505	(0.485,0.523]	chr7	346144	71	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.50634	4.6685300000000005	4.83072	0.0939553	0.0148956	0.188571	0.0847741
chr7	158917262	158917360	3523162	0	+	0.5	(0.485,0.523]	chr7	340293	26	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.50634	4.6685300000000005	4.83072	0.0939553	0.0148956	0.188571	0.0847741
chr9	69054258	69054358	4163998	0	+	0.52	(0.485,0.523]	chr9	395733	6	INTRON	INTRON	FXN	ENSG00000165060.15	ENST00000644653.1:ENST00000484259.3:ENST00000396366.6:ENST00000377270.8:ENST00000498653.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.50634	4.6685300000000005	4.83072	0.0939553	0.0148956	0.188571	0.0847741
chr3	188284544	188284644	1653104	0	+	0.47	(0.45,0.485]	chr3	173754	440	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	1	104	2	3.09257	4.668395	6.24422	0.0447818	5.58345e-4	0.140478	0.00944382
chr5	177451477	177451576	2600320	0	+	0.636364	(0.58,1]	chr5	258321	27	INTRON	INTRON	PRR7	ENSG00000131188.12	ENST00000507881.5:ENST00000323249.8:ENST00000502922.5:ENST00000510492.1	protein_coding	protein_coding	protein_coding	protein_coding	1	93	2	3.09824	4.66828	6.23832	0.0341637	2.24165e-4	0.125129	0.00490779
chr13	112694539	112694639	5652585	0	+	0.52	(0.485,0.523]	chr13	554894	37	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.65198	4.66816	4.68434	0.0783889	0.0200045	0.175203	0.100864
chr22	45291112	45291210	7738860	0	+	0.5	(0.485,0.523]	chr22	811371	16	INTRON	INTRON	UPK3A	ENSG00000100373.10	ENST00000216211.9:ENST00000396082.2	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.65198	4.66816	4.68434	0.0783889	0.0200045	0.175203	0.100864
chr1	43558127	43558227	107020	0	+	0.59	(0.58,1]	chr1	13192	38	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	195	2	4.50455	4.668089999999999	4.83163	0.00215269	1.31533e-4	0.02913	0.00335491
chr16	52539247	52539347	6589782	0	-	0.34	(0.33,0.36]	chr16	658709	193	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	440	2	3.83476	4.668075	5.50139	5.92918e-4	4.77244e-4	0.0142974	0.00845656
chr16	85389636	85389736	6516967	0	+	0.47	(0.45,0.485]	chr16	646391	303	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.22352	4.66791	5.1123	0.0496712	0.0458344	0.160725	0.142336
chr7	17548757	17548857	3545990	0	-	0.46	(0.45,0.485]	chr7	342635	247	INTRON	INTRON	LINC02889	ENSG00000236039.3	ENST00000451792.1	lncRNA	lncRNA	lncRNA	lncRNA	0	41	2	4.22352	4.66791	5.1123	0.0496712	0.0458344	0.160725	0.142336
chr7	102397698	102397798	3439039	0	+	0.46	(0.45,0.485]	chr7	332753	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PRKRIP1	ENSG00000128563.13	ENST00000477886.5:ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000482465.5:ENST00000462601.5:ENST00000397912.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.22352	4.66791	5.1123	0.0496712	0.0458344	0.160725	0.142336
chr3	73004441	73004541	1502804	0	+	0.4	(0.39,0.419]	chr3	160766	59	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000495566.1:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	92	2	3.18369	4.6678749999999996	6.15206	0.0193131	0.0111378	0.0994526	0.0715198
chr2	200309190	200309290	985981	0	+	0.38	(0.36,0.39]	chr2	108284	1	SS5_PROX	SS5_PROX:INTRON	SPATS2L	ENSG00000196141.14	ENST00000439084.5:ENST00000409718.5:ENST00000358677.9:ENST00000409988.7:ENST00000409385.5:ENST00000439395.5:ENST00000444012.5:ENST00000451764.6:ENST00000360760.9:ENST00000423749.5:ENST00000457757.5:ENST00000471601.5:ENST00000428692.5:ENST00000453663.5:ENST00000409140.8:ENST00000459656.5:ENST00000471533.5:ENST00000409397.6:ENST00000619961.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	119	2	3.25646	4.66784	6.07922	0.0122748	0.00627542	0.0755611	0.0499896
chr14	95408360	95408460	6048860	0	-	0.45	(0.419,0.45]	chr14	593438	12	UTR3	UTR3:EXON_MRNA	SYNE3	ENSG00000176438.13	ENST00000682763.1:ENST00000557275.5	protein_coding	protein_coding	protein_coding	protein_coding	1	90	2	3.42658	4.667835	5.90909	0.0184411	0.0119035	0.0927235	0.0749304
chr17	47453143	47453241	6922384	0	-	0.316327	(0.29,0.33]	chr17	704974	19	INTRON	INTRON	MRPL45P2	ENSG00000228782.8	ENST00000425159.7	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	118	2	3.63625	4.667545	5.69884	0.0155382	0.0019748500000000002	0.0849828	0.0228469
chrX	154415479	154415578	7961674	0	+	0.373737	(0.36,0.39]	chrX	833426	9	INTRON	INTRON	TAFAZZIN	ENSG00000102125.16	ENST00000613634.4:ENST00000601016.6:ENST00000612460.5:ENST00000613002.4:ENST00000652682.1:ENST00000475699.6:ENST00000615986.4:ENST00000617701.5:ENST00000620808.4:ENST00000615658.5:ENST00000614595.2:ENST00000612012.5:ENST00000652476.1:ENST00000369776.8:ENST00000652685.1:ENST00000439735.2:ENST00000616020.5:ENST00000652358.1:ENST00000652390.1:ENST00000483674.3:ENST00000426231.5:ENST00000483780.5:ENST00000476679.5:ENST00000652354.1:ENST00000470127.2:ENST00000652644.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	43	2	4.09186	4.667515	5.24317	0.0687088	0.0433841	0.193274	0.138813
chr10	38115094	38115194	4478827	0	+	0.45	(0.419,0.45]	chr10	428248	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF37A:PLD5P1	ENSG00000075407.19:ENSG00000283930.1	ENST00000638053.1:ENST00000351773.7:ENST00000685332.1:ENST00000361085.9:ENST00000479469.5:ENST00000640275.1:ENST00000477790.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	92	2	3.92957	4.6671700000000005	5.40477	0.0385125	0.00372951	0.131324	0.0351254
chr7	5387171	5387271	3535936	0	-	0.45	(0.419,0.45]	chr7	341476	1	SS5_PROX	SS5_PROX:INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000413081.1	protein_coding	protein_coding	protein_coding	protein_coding	1	92	2	3.92957	4.6671700000000005	5.40477	0.0385125	0.00372951	0.131324	0.0351254
chr6	36679039	36679139	2906379	0	+	0.66	(0.58,1]	chr6	285234	1	SS5_PROX	SS5_PROX:INTRON	CDKN1A	ENSG00000124762.14	ENST00000615513.4:ENST00000448526.6:ENST00000459970.1:ENST00000405375.5:ENST00000244741.10:ENST00000373711.3:ENST00000478800.1:ENST00000462537.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	104	2	3.43872	4.667065	5.89541	0.0066708	0.00239935	0.0540577	0.0261006
chr3	98741183	98741283	1516298	0	+	0.33	(0.29,0.33]	chr3	161540	72	INTRON	INTRON	ST3GAL6	ENSG00000064225.13	ENST00000489112.5:ENST00000265261.11:ENST00000460774.5:ENST00000469105.5:ENST00000466482.5:ENST00000462152.5:ENST00000486249.5:ENST00000497008.5:ENST00000486334.6:ENST00000394162.5:ENST00000613264.5:ENST00000480133.1:ENST00000465004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	86	2	3.93355	4.66703	5.40051	0.0252356	0.00289464	0.108065	0.0297681
chr2	138568435	138568535	904564	0	+	0.34	(0.33,0.36]	chr2	101983	1	SS3_PROX	SS3_PROX:INTRON	SPOPL	ENSG00000144228.9	ENST00000280098.9:ENST00000420679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	87	2	3.72192	4.667015	5.61211	0.022456	0.00550077	0.102751	0.0454065
chr3	60911387	60911487	1802727	0	-	0.44	(0.419,0.45]	chr3	186830	549	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5:ENST00000490952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.29342	4.666925	5.04043	0.0625897	0.0526662	0.167062	0.160305
chr7	137986064	137986164	3720563	0	-	0.45	(0.419,0.45]	chr7	357307	523	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.29342	4.666925	5.04043	0.0625897	0.0526662	0.167062	0.160305
chr10	75468513	75468613	4520843	0	+	0.47	(0.45,0.485]	chr10	432249	169	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.32491	4.66675	5.00859	0.052901	0.0418883	0.14912	0.149021
chr13	113051608	113051708	5656151	0	+	0.46	(0.45,0.485]	chr13	555180	44	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.32491	4.66675	5.00859	0.052901	0.0418883	0.14912	0.149021
chr5	93866394	93866494	2726845	0	-	0.46	(0.45,0.485]	chr5	267864	418	INTRON	INTRON	FAM172A	ENSG00000113391.19	ENST00000395965.8:ENST00000505869.5:ENST00000509739.5:ENST00000509163.5:ENST00000502503.1:ENST00000510445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.32491	4.66675	5.00859	0.052901	0.0418883	0.14912	0.149021
chr8	53765429	53765528	3980139	0	-	0.454545	(0.45,0.485]	chr8	380652	84	INTRON	INTRON	ATP6V1H	ENSG00000047249.18	ENST00000359530.7:ENST00000355221.7:ENST00000520188.5:ENST00000523343.1:ENST00000523899.5:ENST00000396774.6:ENST00000524164.5:ENST00000523426.1:ENST00000521707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.32491	4.66675	5.00859	0.052901	0.0418883	0.14912	0.149021
chr1	169998432	169998531	616892	0	-	0.383838	(0.36,0.39]	chr1	73066	58	INTRON	INTRON	KIFAP3	ENSG00000075945.13	ENST00000367767.5:ENST00000367765.5:ENST00000361580.7:ENST00000538366.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.56926	4.66658	4.7639	0.0811309	0.031369	0.177951	0.127822
chr6	31628975	31629059	2893528	0	+	0.369048	(0.36,0.39]	chr6	282598	5	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PRRC2A	ENSG00000204469.13	ENST00000376033.3:ENST00000376007.8:ENST00000483470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.56926	4.66658	4.7639	0.0811309	0.031369	0.177951	0.127822
chr12	94376714	94376812	5473634	0	-	0.408163	(0.39,0.419]	chr12	538155	3	INTRON	INTRON	CEP83	ENSG00000173588.16	ENST00000397809.10:ENST00000339839.9:ENST00000547232.5:ENST00000547575.5:ENST00000549352.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	43	2	4.09132	4.66657	5.24182	0.0689553	0.0441194	0.193274	0.140174
chr19	7281293	7281393	7325089	0	-	0.41	(0.39,0.419]	chr19	756833	130	INTRON	INTRON	INSR	ENSG00000171105.14	ENST00000341500.9:ENST00000302850.10:ENST00000598216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	43	2	4.09132	4.66657	5.24182	0.0689553	0.0441194	0.193274	0.140174
chr6	56728935	56729035	3155020	0	-	0.41	(0.39,0.419]	chr6	307992	242	INTRON	INTRON	DST	ENSG00000151914.22	ENST00000312431.10:ENST00000421834.6:ENST00000680361.1:ENST00000370788.6:ENST00000520645.6:ENST00000361203.7:ENST00000523967.5:ENST00000449297.6:ENST00000521821.1:ENST00000650917.1:ENST00000522538.5:ENST00000523817.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	43	2	4.09132	4.66657	5.24182	0.0689553	0.0441194	0.193274	0.140174
chr6	87339225	87339322	2951334	0	+	0.463918	(0.45,0.485]	chr6	290444	17	INTRON	INTRON	SMIM8	ENSG00000111850.11	ENST00000608353.5:ENST00000392863.6:ENST00000229570.9:ENST00000448282.6:ENST00000608525.5:ENST00000369572.3:ENST00000608868.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	87	2	3.34686	4.666435	5.98601	0.0124121	0.0119228	0.0765738	0.0741726
chr22	38834580	38834679	7813011	0	-	0.525253	(0.523,0.58]	chr22	819306	57	INTRON	INTRON	NPTXR	ENSG00000221890.6	ENST00000333039.4	protein_coding	protein_coding	protein_coding	protein_coding	1	89	2	3.13506	4.666399999999999	6.19774	0.0186841	0.0072907	0.0976296	0.0567247
chr1	148571181	148571270	582413	0	-	0.449438	(0.419,0.45]	chr1	67112	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF14	ENSG00000270629.7	ENST00000619423.4:ENST00000614999.4:ENST00000621066.4:ENST00000611826.4:ENST00000616120.4:ENST00000621070.4	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.19215	4.6663250000000005	5.1405	0.0617113	0.0550015	0.18013	0.153337
chr15	40106840	40106938	6235226	0	-	0.55102	(0.523,0.58]	chr15	613046	3	SS3_PROX	SS3_PROX:INTRON	BMF	ENSG00000104081.14	ENST00000354670.9:ENST00000558774.5:ENST00000559701.5:ENST00000557870.1:ENST00000560430.1	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	3.18279	4.66615	6.14951	0.0168396	0.00793972	0.0919482	0.0596361
chr10	79176015	79176115	4533117	0	+	0.64	(0.58,1]	chr10	432438	135	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	205	2	4.51264	4.665900000000001	4.81916	0.00107349	3.64278e-4	0.0197319	0.00699922
chr1	160322930	160323030	605895	0	-	0.4	(0.39,0.419]	chr1	71977	1	SS5_PROX	SS5_PROX:INTRON	COPA	ENSG00000122218.17	ENST00000241704.8:ENST00000696204.1:ENST00000696203.1:ENST00000696202.1:ENST00000649963.1:ENST00000696208.1:ENST00000696207.1:ENST00000696206.1:ENST00000649676.1:ENST00000368069.7:ENST00000647693.1:ENST00000649787.1:ENST00000650154.1:ENST00000647799.1:ENST00000648805.1:ENST00000647683.1:ENST00000649231.1:ENST00000648501.1:ENST00000696209.1:ENST00000696210.1:ENST00000696211.1:ENST00000647899.1:ENST00000696212.1:ENST00000696214.1:ENST00000696213.1:ENST00000696215.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.56871	4.66564	4.76257	0.0822354	0.0315133	0.179396	0.127889
chr22	33464955	33465055	7798301	0	-	0.4	(0.39,0.419]	chr22	817588	265	INTRON	INTRON	LARGE1	ENSG00000133424.22	ENST00000608642.6:ENST00000609799.6:ENST00000610186.6:ENST00000397394.8:ENST00000413114.6:ENST00000676070.1:ENST00000674543.1:ENST00000676370.1:ENST00000354992.7:ENST00000402320.6:ENST00000675416.1:ENST00000676132.1:ENST00000676126.1:ENST00000675382.1:ENST00000676031.1:ENST00000674668.1:ENST00000674999.1:ENST00000674708.1:ENST00000674780.1:ENST00000674789.1:ENST00000675277.1:ENST00000421768.2:ENST00000434071.6:ENST00000432776.6:ENST00000423375.2:ENST00000430220.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.56871	4.66564	4.76257	0.0822354	0.0315133	0.179396	0.127889
chr3	10238047	10238147	1407268	0	+	0.4	(0.39,0.419]	chr3	151190	30	INTRON	INTRON	IRAK2	ENSG00000134070.5	ENST00000256458.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.56871	4.66564	4.76257	0.0822354	0.0315133	0.179396	0.127889
chr19	23324574	23324674	7358029	0	-	0.36	(0.33,0.36]	chr19	762771	141	INTRON	INTRON	ZNF91	ENSG00000167232.14	ENST00000596528.1:ENST00000596989.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	39	2	4.49588	4.66563	4.83538	0.0679743	0.033477	0.164413	0.133139
chr20	26010855	26010952	7452332	0	+	0.546392	(0.523,0.58]	chr20	775551	12	EXON_LNCRNA	EXON_LNCRNA	ENSG00000287569	ENSG00000287569.1	ENST00000668826.1	lncRNA	lncRNA	lncRNA	lncRNA	2	112	2	3.23118	4.665395	6.09961	0.00866655	0.00547248	0.0623824	0.0454065
chr21	45450626	45450726	7630769	0	+	0.65	(0.58,1]	chr21	797656	448	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	3.89258	4.66505	5.43752	0.0156166	0.00229214	0.0849828	0.0253494
chr3	15802770	15802870	1698250	0	-	0.43	(0.419,0.45]	chr3	177574	47	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.63955	4.66494	4.69033	0.0958674	0.0293406	0.189038	0.125102
chr7	102047041	102047141	3436285	0	+	0.44	(0.419,0.45]	chr7	332534	185	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.63955	4.66494	4.69033	0.0958674	0.0293406	0.189038	0.125102
chrX	2840414	2840513	7830926	0	+	0.434343	(0.419,0.45]	chrX	822184	99	INTRON	INTRON	GYG2	ENSG00000056998.20	ENST00000381163.7:ENST00000381161.5:ENST00000398806.8:ENST00000520904.3:ENST00000469234.6:ENST00000353656.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.63955	4.66494	4.69033	0.0958674	0.0293406	0.189038	0.125102
chrX	65515952	65516048	8055033	0	-	0.4375	(0.419,0.45]	chrX	840752	6	INTRON	INTRON	LAS1L	ENSG00000001497.18	ENST00000677056.1:ENST00000677969.1:ENST00000374811.8:ENST00000374807.9:ENST00000677834.1:ENST00000484069.1:ENST00000374804.9:ENST00000677986.1:ENST00000677087.1:ENST00000679056.1:ENST00000679261.1:ENST00000678074.1:ENST00000678705.1:ENST00000679277.1:ENST00000677154.1:ENST00000678547.1:ENST00000678956.1:ENST00000679116.1:ENST00000678848.1:ENST00000678173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.63955	4.66494	4.69033	0.0958674	0.0293406	0.189038	0.125102
chr12	46708341	46708441	5220278	0	+	0.47	(0.45,0.485]	chr12	506670	559	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2	lncRNA	lncRNA	lncRNA	lncRNA	1	107	2	3.53745	4.66468	5.79191	0.0221397	0.00183113	0.101784	0.0216571
chr3	65419237	65419337	1809642	0	-	0.37	(0.36,0.39]	chr3	187193	174	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5	protein_coding	protein_coding	protein_coding	protein_coding	2	250	2	4.6127	4.6646350000000005	4.71657	0.00315404	5.96463e-4	0.0359193	0.00990739
chr20	36855983	36856083	7557061	0	-	0.6	(0.58,1]	chr20	789155	162	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	3.52722	4.66456	5.8019	0.007984	0.00611467	0.0596361	0.0489549
chr3	133773524	133773621	1572469	0	+	0.298969	(0.29,0.33]	chr3	166768	9	EXON_MRNA	EXON_MRNA:INTRON	TF	ENSG00000091513.16	ENST00000402696.9:ENST00000461695.1:ENST00000467842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	236	2	4.45578	4.664545	4.87331	0.0015755	7.04866e-4	0.0245719	0.0111395
chr15	58469045	58469145	6117419	0	+	0.38	(0.36,0.39]	chr15	602003	128	INTRON	INTRON	LIPC	ENSG00000166035.11	ENST00000356113.10:ENST00000414170.7:ENST00000299022.10:ENST00000433326.2:ENST00000559845.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	107	2	3.21593	4.66453	6.11313	0.0398531	0.00107374	0.133954	0.0148869
chr10	119895643	119895743	4597234	0	+	0.42	(0.419,0.45]	chr10	439450	23	INTRON	INTRON	SEC23IP	ENSG00000107651.14	ENST00000369075.8:ENST00000470478.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	90	2	3.77132	4.664355	5.55739	0.0310506	0.00544312	0.119758	0.0454065
chr15	85601510	85601610	6178428	0	+	0.33	(0.29,0.33]	chr15	607582	153	INTRON	INTRON	AKAP13	ENSG00000170776.22	ENST00000559362.5:ENST00000394518.7:ENST00000361243.6:ENST00000560340.5	protein_coding	protein_coding	protein_coding	protein_coding	1	84	2	3.59602	4.66408	5.73214	0.0146933	0.00672736	0.0826843	0.0519464
chr1	2155694	2155794	4181	0	+	0.53	(0.523,0.58]	chr1	984	3	SS3_PROX	SS3_PROX:INTRON	PRKCZ	ENSG00000067606.17	ENST00000378567.8:ENST00000400921.6:ENST00000461106.6:ENST00000486681.5:ENST00000479263.5:ENST00000503672.1:ENST00000478770.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.60868	4.66395	4.71922	0.0721601	0.0226775	0.168159	0.108193
chr10	79430560	79430660	4720704	0	-	0.57	(0.523,0.58]	chr10	450456	358	INTRON	INTRON	ZCCHC24	ENSG00000165424.7	ENST00000372336.4:ENST00000372333.3	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.60868	4.66395	4.71922	0.0721601	0.0226775	0.168159	0.108193
chr6	158026668	158026767	3059759	0	+	0.525253	(0.523,0.58]	chr6	297373	85	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.60868	4.66395	4.71922	0.0721601	0.0226775	0.168159	0.108193
chr9	38065428	38065528	4303742	0	-	0.58	(0.523,0.58]	chr9	411616	489	INTRON	INTRON	SHB	ENSG00000107338.10	ENST00000377707.4	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.60868	4.66395	4.71922	0.0721601	0.0226775	0.168159	0.108193
chr7	47362188	47362288	3587413	0	-	0.49	(0.485,0.523]	chr7	346030	155	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	139	2	2.85408	4.663795	6.47351	0.0323592	2.44978e-4	0.121593	0.00523316
chr5	66065686	66065786	2438774	0	+	0.34	(0.33,0.36]	chr5	242864	102	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1:ENST00000511671.5:ENST00000503913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	87	2	3.45733	4.663774999999999	5.87022	0.0148989	0.0102015	0.0834354	0.0678072
chr2	63970380	63970479	1166537	0	-	0.383838	(0.36,0.39]	chr2	127319	10	INTRON	INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9:ENST00000354504.7	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	3.52669	4.663375	5.80006	0.0191255	0.00914333	0.0952349	0.063297
chr7	47476606	47476706	3588574	0	-	0.49	(0.485,0.523]	chr7	346123	235	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	2	145	2	3.17666	4.663365000000001	6.15007	0.0186746	6.0909e-4	0.0934336	0.0100377
chr16	29269114	29269214	6433528	0	+	0.65	(0.58,1]	chr16	636745	170	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	3	299	2	4.63617	4.663205	4.69024	5.81502e-4	2.07711e-4	0.0141176	0.00464072
chr2	235998010	235998110	1067596	0	+	0.3	(0.29,0.33]	chr2	115748	290	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5:ENST00000418654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.59993	4.66314	4.72635	0.0672935	0.0243639	0.163263	0.113231
chr3	17496579	17496679	1702331	0	-	0.33	(0.29,0.33]	chr3	177733	677	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.59993	4.66314	4.72635	0.0672935	0.0243639	0.163263	0.113231
chr9	96548426	96548525	4344916	0	-	0.323232	(0.29,0.33]	chr9	415167	62	INTRON	INTRON	CDC14B	ENSG00000081377.17	ENST00000474602.5:ENST00000412285.6:ENST00000375241.6:ENST00000375240.7:ENST00000375242.7:ENST00000463569.5:ENST00000452280.5:ENST00000415608.1:ENST00000480920.5:ENST00000496750.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.59993	4.66314	4.72635	0.0672935	0.0243639	0.163263	0.113231
chrX	120543533	120543626	8097348	0	-	0.290323	(0.29,0.33]	chrX	844247	1	SS5_PROX	SS5_PROX:INTRON	CUL4B	ENSG00000158290.19	ENST00000680673.1:ENST00000681253.1:ENST00000679927.1:ENST00000371322.11:ENST00000681189.1:ENST00000681080.1:ENST00000680918.1:ENST00000336592.11:ENST00000681333.1:ENST00000679405.1:ENST00000371323.3:ENST00000681206.1:ENST00000680577.1:ENST00000680324.1:ENST00000674137.11:ENST00000680165.1:ENST00000673919.1:ENST00000680457.1:ENST00000681090.1:ENST00000674073.2:ENST00000679844.1:ENST00000681908.1:ENST00000681652.1:ENST00000679432.1:ENST00000680474.1:ENST00000681864.1:ENST00000404115.8:ENST00000681869.1:ENST00000681224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	38	2	4.59993	4.66314	4.72635	0.0672935	0.0243639	0.163263	0.113231
chr1	11812760	11812859	28591	0	+	0.515152	(0.485,0.523]	chr1	3422	52	INTRON	INTRON	CLCN6	ENSG00000011021.23	ENST00000312413.10:ENST00000346436.11:ENST00000376497.7:ENST00000400892.3:ENST00000376496.4:ENST00000376492.3:ENST00000376490.7:ENST00000376491.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.60518	4.6624099999999995	4.71964	0.0718646	0.0233371	0.168159	0.110098
chr15	78926784	78926868	6336932	0	-	0.488095	(0.485,0.523]	chr15	624688	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	CTSH	ENSG00000103811.18	ENST00000677011.1:ENST00000220166.10:ENST00000676639.1:ENST00000676510.1:ENST00000678727.1:ENST00000679334.1:ENST00000679017.1:ENST00000677810.1:ENST00000676763.1:ENST00000678886.1:ENST00000677921.1:ENST00000676596.1:ENST00000678114.1:ENST00000678487.1:ENST00000649928.2:ENST00000527715.6:ENST00000530010.6:ENST00000676671.1:ENST00000534533.6:ENST00000678283.1:ENST00000678841.1:ENST00000679125.1:ENST00000677316.1:ENST00000678031.1:ENST00000678644.1:ENST00000676808.1:ENST00000677207.1:ENST00000676486.1:ENST00000677238.1:ENST00000678281.1:ENST00000678799.1:ENST00000525807.6:ENST00000676588.1:ENST00000528191.6:ENST00000678817.1:ENST00000676880.1:ENST00000528741.6:ENST00000678415.1:ENST00000679172.1:ENST00000533777.5:ENST00000534237.6:ENST00000677448.1:ENST00000677534.1:ENST00000677367.1:ENST00000678397.1:ENST00000679047.1:ENST00000676865.1:ENST00000677102.1:ENST00000677874.1:ENST00000677254.1:ENST00000677936.1:ENST00000678940.1:ENST00000677789.1:ENST00000615999.5:ENST00000677049.1:ENST00000678033.1:ENST00000679211.1:ENST00000676850.1:ENST00000534268.6:ENST00000529861.6:ENST00000676738.1:ENST00000527138.6:ENST00000677320.1:ENST00000529612.6:ENST00000676668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	0	38	2	4.60518	4.6624099999999995	4.71964	0.0718646	0.0233371	0.168159	0.110098
chr17	78736719	78736804	6978862	0	-	0.517647	(0.485,0.523]	chr17	712627	1	UTR5	UTR5:EXON_MRNA:INTRON	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000591574.5:ENST00000589768.5:ENST00000591095.1:ENST00000592497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.60518	4.6624099999999995	4.71964	0.0718646	0.0233371	0.168159	0.110098
chr19	44946664	44946754	7269158	0	+	0.5	(0.485,0.523]	chr19	746444	2	INTRON	INTRON	APOC4-APOC2:APOC2	ENSG00000224916.9:ENSG00000234906.11	ENST00000585685.5:ENST00000589057.5:ENST00000592257.5:ENST00000252490.7:ENST00000591597.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.60518	4.6624099999999995	4.71964	0.0718646	0.0233371	0.168159	0.110098
chr2	3286518	3286618	1080972	0	-	0.51	(0.485,0.523]	chr2	117633	38	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.60518	4.6624099999999995	4.71964	0.0718646	0.0233371	0.168159	0.110098
chr2	70063491	70063591	1178620	0	-	0.52	(0.485,0.523]	chr2	128233	2	SS5_PROX	SS5_PROX:INTRON	PCBP1-AS1	ENSG00000179818.16	ENST00000419542.5:ENST00000682294.1:ENST00000684630.1:ENST00000630975.3:ENST00000435880.6:ENST00000629339.3:ENST00000667874.1:ENST00000628659.2:ENST00000628308.2:ENST00000626515.2:ENST00000625447.2:ENST00000628305.2:ENST00000625625.2:ENST00000625864.2:ENST00000630522.2:ENST00000629084.2:ENST00000629603.2:ENST00000625215.2:ENST00000627189.2:ENST00000629836.2:ENST00000626898.2:ENST00000628883.2:ENST00000629533.2:ENST00000627181.2:ENST00000630214.2:ENST00000627918.2:ENST00000628374.2:ENST00000627327.2:ENST00000626495.2:ENST00000629605.2:ENST00000626370.2:ENST00000626842.2:ENST00000630457.2:ENST00000629184.2:ENST00000628551.2:ENST00000630746.2:ENST00000627398.2:ENST00000457076.5:ENST00000625783.2:ENST00000625490.2:ENST00000627050.2:ENST00000630759.2:ENST00000628667.2:ENST00000626632.2:ENST00000631110.2:ENST00000626609.2:ENST00000629506.2:ENST00000630985.2:ENST00000413436.5:ENST00000628147.2:ENST00000631107.2:ENST00000629415.2:ENST00000418564.5:ENST00000415222.5:ENST00000628322.2:ENST00000665708.1:ENST00000655086.1:ENST00000420309.6:ENST00000627487.3:ENST00000670036.1:ENST00000655096.1:ENST00000685127.1:ENST00000684907.1:ENST00000685079.1:ENST00000687866.1:ENST00000692564.1:ENST00000686517.1:ENST00000689138.1:ENST00000688056.1:ENST00000692333.1:ENST00000688045.1:ENST00000657291.1:ENST00000691987.1:ENST00000664483.1:ENST00000601431.6:ENST00000685803.1:ENST00000690200.1:ENST00000686800.1:ENST00000684857.1:ENST00000627037.2:ENST00000688473.1:ENST00000456161.5:ENST00000627074.2:ENST00000419963.5:ENST00000625227.2:ENST00000599673.5:ENST00000629407.2:ENST00000418308.5:ENST00000630283.2:ENST00000629178.2:ENST00000627542.2:ENST00000626574.2:ENST00000596028.5:ENST00000629485.2:ENST00000630685.2:ENST00000452431.5:ENST00000629374.2:ENST00000423402.5:ENST00000411429.5:ENST00000629188.2:ENST00000434781.5:ENST00000626162.2:ENST00000654878.1:ENST00000659586.1:ENST00000457770.6:ENST00000415742.5:ENST00000627540.2:ENST00000628263.2:ENST00000657575.2:ENST00000689275.1:ENST00000687961.1:ENST00000416395.6:ENST00000692733.1:ENST00000654336.1:ENST00000686055.1:ENST00000626509.3:ENST00000425601.6:ENST00000653064.1:ENST00000656326.1:ENST00000668711.1:ENST00000665172.1:ENST00000630520.3:ENST00000663209.1:ENST00000659305.1:ENST00000654601.1:ENST00000663375.1:ENST00000654958.1:ENST00000665838.1:ENST00000653606.1:ENST00000659941.1:ENST00000669583.1:ENST00000660903.1:ENST00000653596.1:ENST00000656308.1:ENST00000449178.6:ENST00000625955.3:ENST00000655140.1:ENST00000661989.1:ENST00000664419.1:ENST00000670785.1:ENST00000661703.1:ENST00000658454.1:ENST00000664049.1:ENST00000655058.1:ENST00000366234.7:ENST00000597318.5:ENST00000625518.2:ENST00000425333.5:ENST00000429599.6:ENST00000432604.5:ENST00000421843.5:ENST00000458686.5:ENST00000421255.5:ENST00000413069.5:ENST00000685037.1:ENST00000458698.6:ENST00000670786.1:ENST00000657164.1:ENST00000665264.1:ENST00000413791.5:ENST00000690464.1:ENST00000690924.1:ENST00000688311.1:ENST00000691287.1:ENST00000655481.1:ENST00000655420.1:ENST00000612202.5:ENST00000666167.1:ENST00000664958.1:ENST00000416068.6:ENST00000653289.1:ENST00000653811.1:ENST00000661863.1:ENST00000659531.1:ENST00000667307.1:ENST00000437019.2:ENST00000666074.1:ENST00000654716.1:ENST00000439670.6:ENST00000669812.1:ENST00000660404.2:ENST00000656852.1:ENST00000670845.1:ENST00000669570.1:ENST00000422515.6:ENST00000653114.1:ENST00000667952.1:ENST00000662224.1:ENST00000664533.1:ENST00000670313.1:ENST00000626558.3:ENST00000670974.1:ENST00000664014.1:ENST00000668191.1:ENST00000609543.6:ENST00000664754.1:ENST00000662103.1:ENST00000669896.1:ENST00000629943.3:ENST00000625788.3:ENST00000663033.1:ENST00000442040.5:ENST00000627155.2:ENST00000601396.5:ENST00000629825.2:ENST00000444410.5:ENST00000444320.5:ENST00000630377.2:ENST00000662425.1:ENST00000688278.1:ENST00000596573.5:ENST00000594548.5:ENST00000601395.1:ENST00000437456.5:ENST00000595459.5:ENST00000415060.6:ENST00000596665.5:ENST00000625257.2:ENST00000627528.2:ENST00000630206.2:ENST00000628102.2:ENST00000439892.6:ENST00000609075.5:ENST00000628757.2	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.60518	4.6624099999999995	4.71964	0.0718646	0.0233371	0.168159	0.110098
chr4	118784708	118784808	2315088	0	-	0.49	(0.485,0.523]	chr4	232604	150	INTRON	INTRON	SEC24D	ENSG00000150961.15	ENST00000280551.11:ENST00000514561.5:ENST00000419654.6:ENST00000509818.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.60518	4.6624099999999995	4.71964	0.0718646	0.0233371	0.168159	0.110098
chr7	1983033	1983133	3530059	0	-	0.49	(0.485,0.523]	chr7	340981	21	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.60518	4.6624099999999995	4.71964	0.0718646	0.0233371	0.168159	0.110098
chr14	35741478	35741575	5960721	0	-	0.43299	(0.419,0.45]	chr14	584316	25	INTRON	INTRON	RALGAPA1	ENSG00000174373.17	ENST00000307138.10:ENST00000389698.7:ENST00000680220.1:ENST00000554259.6:ENST00000637992.1:ENST00000382366.7:ENST00000553892.2:ENST00000554652.5:ENST00000554704.5:ENST00000557069.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	93	2	4.00263	4.6622900000000005	5.32195	0.0431627	0.00312051	0.138403	0.0311915
chr3	13204125	13204225	1691183	0	-	0.74	(0.58,1]	chr3	176566	396	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	1	92	2	3.29173	4.66222	6.03271	0.0243429	4.18183e-4	0.106588	0.00770005
chr19	7119583	7119683	7323445	0	-	0.51	(0.485,0.523]	chr19	756714	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	INSR	ENSG00000171105.14	ENST00000341500.9:ENST00000302850.10	protein_coding	protein_coding	protein_coding	protein_coding	1	103	2	3.44992	4.662115	5.87431	0.0240794	0.00127835	0.106575	0.0168904
chr10	100548735	100548834	4569153	0	+	0.494949	(0.485,0.523]	chr10	436105	7	UTR3	UTR3:EXON_MRNA	HIF1AN	ENSG00000166135.14	ENST00000299163.7	protein_coding	protein_coding	protein_coding	protein_coding	3	135	2	2.92695	4.662095	6.39724	0.00693985	0.00505512	0.05314	0.0465263
chr17	72527035	72527134	6963577	0	-	0.40404	(0.39,0.419]	chr17	710377	1	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	6	222	2	3.1246	4.662045	6.19949	0.0103045	0.0024078	0.0684871	0.0261086
chr19	33806263	33806362	7241207	0	+	0.515152	(0.485,0.523]	chr19	741479	46	INTRON	INTRON	KCTD15	ENSG00000153885.15	ENST00000587658.5:ENST00000587559.5:ENST00000588637.5:ENST00000284006.10:ENST00000589786.5:ENST00000683859.1:ENST00000588881.5:ENST00000430256.3	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	4.10606	4.661875	5.21769	0.0359739	0.00177809	0.127853	0.0212512
chr17	43543679	43543779	6909605	0	-	0.55	(0.523,0.58]	chr17	703272	4	SS5_PROX	SS5_PROX:INTRON	ETV4	ENSG00000175832.13	ENST00000538265.5:ENST00000319349.10:ENST00000393664.6:ENST00000545954.5:ENST00000545089.5:ENST00000591713.5:ENST00000590236.5:ENST00000585508.5:ENST00000587151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	406	2	4.03174	4.66127	5.2908	7.52359e-4	1.96837e-4	0.0162125	0.00447577
chr10	79143772	79143872	4532794	0	+	0.64	(0.58,1]	chr10	432432	36	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	3.39676	4.66102	5.92528	0.0085026	0.0062948	0.0608246	0.0523832
chr13	50236139	50236238	5594959	0	+	0.444444	(0.419,0.45]	chr13	551540	114	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000485007.5:ENST00000475913.5:ENST00000484529.5:ENST00000473075.3:ENST00000483444.5	lncRNA	lncRNA	lncRNA	lncRNA	1	91	2	3.27753	4.66097	6.04441	0.0163857	0.0149622	0.0910838	0.0835955
chrX	9531488	9531588	7843111	0	+	0.29	[0,0.29]	chrX	822407	4	SS5_PROX	SS5_PROX:INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.54275	4.660735	4.77872	0.0681032	0.0145383	0.164448	0.0836469
chr11	129845835	129845935	4965073	0	+	0.45	(0.419,0.45]	chr11	479911	172	INTRON	INTRON	TMEM45B	ENSG00000151715.8	ENST00000281441.8:ENST00000527754.1:ENST00000529381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.38804	4.66047	4.9329	0.0716557	0.0451818	0.168159	0.154539
chr8	13266963	13267063	3941180	0	-	0.44	(0.419,0.45]	chr8	376723	518	INTRON	INTRON	DLC1	ENSG00000164741.15	ENST00000276297.9:ENST00000512044.6:ENST00000509922.5:ENST00000503161.6:ENST00000506171.1:ENST00000316609.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.38804	4.66047	4.9329	0.0716557	0.0451818	0.168159	0.154539
chr12	120998300	120998393	5341121	0	+	0.462366	(0.45,0.485]	chr12	521576	1	INTRON	INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000560968.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	87	2	3.93538	4.660205	5.38503	0.0308908	0.00301535	0.119556	0.0305643
chr10	132565348	132565448	4617114	0	+	0.46	(0.45,0.485]	chr10	441139	268	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	3.67093	4.660075	5.64922	0.020599	0.00582542	0.0982852	0.0473208
chr10	92692093	92692184	4550923	0	+	0.483516	(0.45,0.485]	chr10	434378	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HHEX	ENSG00000152804.11	ENST00000282728.10:ENST00000551454.1:ENST00000472590.6:ENST00000492654.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	305	2	4.63928	4.66001	4.68074	0.00285609	1.16359e-4	0.033917	0.00307796
chr3	177156482	177156581	1960998	0	-	0.262626	[0,0.29]	chr3	199326	204	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1:ENST00000636912.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	87	2	3.08401	4.659865	6.23572	0.0199046	0.00375427	0.100864	0.0394676
chr13	113587147	113587246	5658871	0	+	0.606061	(0.58,1]	chr13	555775	9	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	92	2	3.16566	4.6597100000000005	6.15376	0.0304114	2.90409e-4	0.11845	0.0059241
chr22	42945584	42945684	7823585	0	-	0.49	(0.485,0.523]	chr22	820615	4	SS5_PROX	SS5_PROX:INTRON	PACSIN2	ENSG00000100266.19	ENST00000337959.8:ENST00000263246.8:ENST00000407585.5:ENST00000403744.7:ENST00000402229.5:ENST00000453643.5:ENST00000422336.5:ENST00000418133.5:ENST00000445706.5:ENST00000453079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	84	2	3.46766	4.65948	5.8513	0.0131886	0.0089247	0.0785398	0.0620271
chr1	43593792	43593890	107388	0	+	0.479592	(0.45,0.485]	chr1	13240	8	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.5725	4.6594549999999995	4.74641	0.0926859	0.0193126	0.188571	0.0994526
chr14	63486648	63486747	5992405	0	-	0.484848	(0.45,0.485]	chr14	587804	324	INTRON	INTRON	PPP2R5E	ENSG00000154001.14	ENST00000337537.8:ENST00000422769.6:ENST00000555899.1:ENST00000556484.5:ENST00000553266.5:ENST00000556878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.5725	4.6594549999999995	4.74641	0.0926859	0.0193126	0.188571	0.0994526
chr19	16874458	16874558	7218130	0	+	0.46	(0.45,0.485]	chr19	737687	19	INTRON	INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000595541.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.5725	4.6594549999999995	4.74641	0.0926859	0.0193126	0.188571	0.0994526
chr2	239275282	239275381	1391461	0	-	0.484848	(0.45,0.485]	chr2	148740	237	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.5725	4.6594549999999995	4.74641	0.0926859	0.0193126	0.188571	0.0994526
chr20	10664514	10664613	7525331	0	-	0.464646	(0.45,0.485]	chr20	785558	1	INTRON	INTRON	JAG1	ENSG00000101384.12	ENST00000254958.10	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.5725	4.6594549999999995	4.74641	0.0926859	0.0193126	0.188571	0.0994526
chr19	1496922	1496997	7187815	0	+	0.586667	(0.58,1]	chr19	731383	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	REEP6	ENSG00000115255.12	ENST00000233596.8:ENST00000395479.10:ENST00000395484.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	78	2	3.48503	4.65939	5.83375	0.00751249	0.006811	0.0576451	0.0524379
chr12	48212646	48212745	5223046	0	+	0.626263	(0.58,1]	chr12	506947	78	INTRON	INTRON	ENSG00000269514	ENSG00000269514.3	ENST00000647575.1	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.49116	4.659345	4.82753	0.0427798	0.0207449	0.13762	0.102713
chr12	132549028	132549127	5353107	0	+	0.626263	(0.58,1]	chr12	523676	6	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.49116	4.659345	4.82753	0.0427798	0.0207449	0.13762	0.102713
chr16	75236912	75236998	6644478	0	-	0.616279	(0.58,1]	chr16	664413	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000566982.1:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10:ENST00000569340.1:ENST00000564170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.49116	4.659345	4.82753	0.0427798	0.0207449	0.13762	0.102713
chr21	45475850	45475942	7631026	0	+	0.663043	(0.58,1]	chr21	797680	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.49116	4.659345	4.82753	0.0427798	0.0207449	0.13762	0.102713
chr4	720222	720322	1993830	0	+	0.73	(0.58,1]	chr4	203088	139	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.49116	4.659345	4.82753	0.0427798	0.0207449	0.13762	0.102713
chr7	143387888	143387970	3510786	0	+	0.658537	(0.58,1]	chr7	338492	1	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1:ENST00000497119.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.49116	4.659345	4.82753	0.0427798	0.0207449	0.13762	0.102713
chr9	134413584	134413683	4261569	0	+	0.666667	(0.58,1]	chr9	406352	41	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000481739.2:ENST00000356384.4:ENST00000672570.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.49116	4.659345	4.82753	0.0427798	0.0207449	0.13762	0.102713
chr7	127908510	127908610	3470808	0	+	0.45	(0.419,0.45]	chr7	335407	33	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	92	2	3.95434	4.6591450000000005	5.36395	0.0407485	0.0035117	0.135868	0.0339498
chr1	227243779	227243879	679042	0	-	0.44	(0.419,0.45]	chr1	79881	240	INTRON	INTRON	CDC42BPA	ENSG00000143776.20	ENST00000366766.8:ENST00000366769.7:ENST00000334218.9:ENST00000366767.7:ENST00000366764.8:ENST00000478573.6:ENST00000682551.1:ENST00000462553.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	43	2	4.08324	4.6586549999999995	5.23407	0.0727147	0.0486006	0.199502	0.145074
chr11	117174099	117174196	4944232	0	+	0.42268	(0.419,0.45]	chr11	476928	20	INTRON	INTRON	PAFAH1B2	ENSG00000168092.14	ENST00000419197.6:ENST00000529887.6:ENST00000526888.1:ENST00000530272.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	43	2	4.08324	4.6586549999999995	5.23407	0.0727147	0.0486006	0.199502	0.145074
chr15	66718039	66718139	6138400	0	+	0.45	(0.419,0.45]	chr15	603915	5	INTRON	INTRON	SMAD6	ENSG00000137834.15	ENST00000288840.10:ENST00000557916.5:ENST00000559931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.08324	4.6586549999999995	5.23407	0.0727147	0.0486006	0.199502	0.145074
chr5	78382758	78382858	2462031	0	+	0.45	(0.419,0.45]	chr5	245930	116	INTRON	INTRON	SCAMP1	ENSG00000085365.18	ENST00000614488.4:ENST00000618166.4:ENST00000621999.5:ENST00000511551.2:ENST00000510030.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	43	2	4.08324	4.6586549999999995	5.23407	0.0727147	0.0486006	0.199502	0.145074
chr7	111320285	111320385	3685267	0	-	0.42	(0.419,0.45]	chr7	354615	3564	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	89	2	3.4957	4.65853	5.82136	0.0210659	0.0102234	0.0996078	0.0678072
chr6	158019092	158019192	3059683	0	+	0.48	(0.45,0.485]	chr6	297373	9	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	3.53579	4.658375	5.78096	0.0166968	0.00804225	0.0884836	0.0582806
chr17	27491242	27491342	6702700	0	+	0.48	(0.45,0.485]	chr17	672853	70	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000583370.5:ENST00000398988.7:ENST00000268763.10:ENST00000509603.6:ENST00000582311.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.41963	4.658239999999999	4.89685	0.0614781	0.0355247	0.158506	0.137983
chr2	168460917	168461017	944225	0	+	0.46	(0.45,0.485]	chr2	103959	39	INTRON	INTRON	CERS6	ENSG00000172292.15	ENST00000392687.4:ENST00000305747.11	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.41963	4.658239999999999	4.89685	0.0614781	0.0355247	0.158506	0.137983
chr7	6702684	6702782	3542740	0	-	0.469388	(0.45,0.485]	chr7	342318	19	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.41963	4.658239999999999	4.89685	0.0614781	0.0355247	0.158506	0.137983
chr10	75841282	75841382	4524580	0	+	0.39	(0.36,0.39]	chr10	432282	579	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	91	2	3.98537	4.658215	5.33106	0.0383628	0.00307113	0.131324	0.0309223
chr20	4991709	4991809	7518478	0	-	0.41	(0.39,0.419]	chr20	784906	204	INTRON	INTRON	SLC23A2	ENSG00000089057.15	ENST00000379333.5:ENST00000338244.6:ENST00000468355.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	254	2	4.52899	4.658205000000001	4.78742	0.00282307	7.5236e-4	0.0337044	0.0116694
chr8	118027429	118027529	4048897	0	-	0.47	(0.45,0.485]	chr8	386022	103	INTRON	INTRON	EXT1	ENSG00000182197.13	ENST00000378204.7:ENST00000437196.1:ENST00000436216.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	107	2	2.76944	4.65806	6.54668	0.0716626	2.40818e-4	0.168159	0.00517788
chr12	24936739	24936839	5395947	0	-	0.47	(0.45,0.485]	chr12	528329	338	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000342945.9:ENST00000539780.5:ENST00000546285.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.49786	4.65779	4.81772	0.101311	0.0167663	0.196131	0.0917029
chr10	103698614	103698713	4757086	0	-	0.444444	(0.419,0.45]	chr10	454791	51	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.56048	4.6576900000000006	4.7549	0.0888907	0.0337332	0.183874	0.133139
chr20	3578872	3578972	7420653	0	+	0.45	(0.419,0.45]	chr20	772989	1	SS5_PROX	SS5_PROX:INTRON	ATRN	ENSG00000088812.18	ENST00000262919.10:ENST00000446916.2	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.56048	4.6576900000000006	4.7549	0.0888907	0.0337332	0.183874	0.133139
chr3	27407558	27407657	1721018	0	-	0.434343	(0.419,0.45]	chr3	178659	22	INTRON	INTRON	SLC4A7	ENSG00000033867.17	ENST00000425128.6:ENST00000454389.6:ENST00000295736.9:ENST00000428386.5:ENST00000419036.5:ENST00000445684.5:ENST00000437179.5:ENST00000438530.5:ENST00000440156.5:ENST00000446700.5:ENST00000455077.5:ENST00000457377.5:ENST00000437266.5:ENST00000428179.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.56048	4.6576900000000006	4.7549	0.0888907	0.0337332	0.183874	0.133139
chr4	152782224	152782324	2148778	0	+	0.43	(0.419,0.45]	chr4	217798	16	INTRON	INTRON	ARFIP1	ENSG00000164144.16	ENST00000451320.6:ENST00000429148.6:ENST00000353617.7:ENST00000405727.6:ENST00000356064.3:ENST00000510831.5:ENST00000509413.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.56048	4.6576900000000006	4.7549	0.0888907	0.0337332	0.183874	0.133139
chr14	56583812	56583911	5825837	0	+	0.393939	(0.39,0.419]	chr14	569604	34	INTRON	INTRON	TMEM260	ENSG00000070269.14	ENST00000556810.5:ENST00000556422.5:ENST00000261556.11:ENST00000557657.5:ENST00000555497.5:ENST00000556975.5:ENST00000557626.5:ENST00000539559.6:ENST00000538838.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	88	2	3.71423	4.65759	5.60095	0.0263614	0.00594315	0.110638	0.0479866
chr1	819813	819913	379708	0	-	0.47	(0.45,0.485]	chr1	42663	413	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000634337.2:ENST00000635509.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	38	2	4.64346	4.657425	4.67139	0.0850039	0.0223378	0.181766	0.108193
chr13	33261961	33262061	5685217	0	-	0.47	(0.45,0.485]	chr13	558196	561	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.64346	4.657425	4.67139	0.0850039	0.0223378	0.181766	0.108193
chr15	28651687	28651787	6068875	0	+	0.47	(0.45,0.485]	chr15	596167	1	SS5_PROX	SS5_PROX:INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	0	38	2	4.64346	4.657425	4.67139	0.0850039	0.0223378	0.181766	0.108193
chr17	17737552	17737652	6689411	0	+	0.47	(0.45,0.485]	chr17	671344	130	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.64346	4.657425	4.67139	0.0850039	0.0223378	0.181766	0.108193
chr22	25457058	25457158	7701111	0	+	0.46	(0.45,0.485]	chr22	805960	4	SS3_PROX	SS3_PROX:INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000382734.10:ENST00000686640.1:ENST00000509460.3:ENST00000415709.6:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	38	2	4.64346	4.657425	4.67139	0.0850039	0.0223378	0.181766	0.108193
chr3	50102687	50102786	1468760	0	+	0.454545	(0.45,0.485]	chr3	157305	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RBM5	ENSG00000003756.17	ENST00000347869.8:ENST00000404526.6:ENST00000464087.6:ENST00000395174.6:ENST00000496179.5:ENST00000462025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.64346	4.657425	4.67139	0.0850039	0.0223378	0.181766	0.108193
chr8	125348981	125349081	4065670	0	-	0.46	(0.45,0.485]	chr8	387320	1	SS3_PROX	SS3_PROX:INTRON	ENSG00000254431	ENSG00000254431.1	ENST00000526947.1	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.64346	4.657425	4.67139	0.0850039	0.0223378	0.181766	0.108193
chr10	131919385	131919485	4616210	0	+	0.55	(0.523,0.58]	chr10	441069	64	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	103	2	3.47085	4.65729	5.84373	0.0233215	0.00133116	0.103725	0.0173248
chr10	102646520	102646619	4576489	0	+	0.565657	(0.523,0.58]	chr10	437280	3	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	83	2	3.69181	4.657195	5.62258	0.0193313	0.00510333	0.0954446	0.0433857
chr8	86414154	86414253	3853838	0	+	0.353535	(0.33,0.36]	chr8	369757	19	INTRON	INTRON	WWP1	ENSG00000123124.14	ENST00000517970.6:ENST00000265428.4:ENST00000518683.5:ENST00000520374.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	105	2	3.36841	4.65717	5.94593	0.0295712	0.00143977	0.116079	0.0183435
chr8	38767596	38767696	3802231	0	+	0.57	(0.523,0.58]	chr8	365828	98	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	112	2	3.0699	4.65716	6.24442	0.00819703	0.00670944	0.0591729	0.0541591
chr10	3779144	3779242	4621641	0	-	0.377551	(0.36,0.39]	chr10	441655	33	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	KLF6	ENSG00000067082.15	ENST00000497571.6:ENST00000461124.1:ENST00000542957.1:ENST00000173785.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	527	2	4.54961	4.656885000000001	4.76416	0.0018892	5.30201e-5	0.0271118	0.00171703
chr9	78328784	78328880	4173256	0	+	0.479167	(0.45,0.485]	chr9	396811	2	SS3_PROX	SS3_PROX:INTRON	PSAT1	ENSG00000135069.14	ENST00000376588.4:ENST00000347159.6	protein_coding	protein_coding	protein_coding	protein_coding	2	120	2	3.66424	4.65673	5.64922	0.020599	0.00192579	0.0982852	0.022451
chr8	130428699	130428799	4083489	0	-	0.43	(0.419,0.45]	chr8	388192	10	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000524299.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	89	2	3.68516	4.656605	5.62805	0.0280406	0.00665473	0.113651	0.0515847
chr19	39179071	39179170	7259819	0	+	0.646465	(0.58,1]	chr19	744220	6	UTR3	UTR3:EXON_MRNA	PAK4	ENSG00000130669.17	ENST00000360442.8:ENST00000321944.8:ENST00000358301.7:ENST00000593690.5:ENST00000599386.5	protein_coding	protein_coding	protein_coding	protein_coding	2	103	2	3.38782	4.65655	5.92528	0.0062948	0.00277379	0.0523832	0.0287134
chr5	98869661	98869753	2732794	0	-	0.271739	[0,0.29]	chr5	268505	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CHD1	ENSG00000153922.11	ENST00000614616.5:ENST00000284049.7:ENST00000514344.5:ENST00000511067.2:ENST00000508756.2:ENST00000414220.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.62442	4.656485	4.68855	0.0554735	0.019938	0.154188	0.100864
chr11	68349731	68349830	4882455	0	+	0.606061	(0.58,1]	chr11	470548	11	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	84	2	3.09402	4.65627	6.21852	0.0174733	0.00350812	0.0928044	0.0379357
chr16	81545981	81546081	6508753	0	+	0.57	(0.523,0.58]	chr16	645911	501	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	101	2	3.27435	4.6559550000000005	6.03756	0.0321785	7.92905e-4	0.121593	0.0120621
chr1	36161783	36161883	91559	0	+	0.47	(0.45,0.485]	chr1	10674	41	INTRON	INTRON	MAP7D1	ENSG00000116871.16	ENST00000429533.6:ENST00000316156.8:ENST00000474796.2:ENST00000527764.1:ENST00000373150.8:ENST00000373151.6:ENST00000530729.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	88	2	3.22036	4.65583	6.0913	0.016408	0.00998516	0.0911382	0.0673647
chr17	340852	340952	6821697	0	-	0.69	(0.58,1]	chr17	689626	3	SS5_PROX	SS5_PROX:INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000577079.5:ENST00000573780.5:ENST00000575130.5:ENST00000575634.5	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	2.97713	4.655749999999999	6.33437	0.0226795	0.00276493	0.108193	0.0332418
chr2	222909523	222909615	1038195	0	+	0.380435	(0.36,0.39]	chr2	113222	4	SS5_PROX	SS5_PROX:INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000542810.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.48559	4.655654999999999	4.82572	0.0751666	0.036329	0.172839	0.139793
chr2	3298594	3298694	1081093	0	-	0.48	(0.45,0.485]	chr2	117633	159	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	137	2	2.92245	4.655465	6.38848	0.00745901	0.0059625	0.0554346	0.0506812
chr1	201397509	201397606	642196	0	-	0.525773	(0.523,0.58]	chr1	75864	3	INTRON	INTRON	LAD1	ENSG00000159166.15	ENST00000391967.7:ENST00000367313.4:ENST00000631576.1:ENST00000633953.1	protein_coding	protein_coding	protein_coding	protein_coding	1	83	2	3.55341	4.655415	5.75742	0.0155135	0.00716661	0.0849828	0.0541871
chr4	2755152	2755250	2183517	0	-	0.540816	(0.523,0.58]	chr4	221459	69	INTRON	INTRON	TNIP2	ENSG00000168884.15	ENST00000315423.12:ENST00000510267.5:ENST00000503235.1:ENST00000507686.1:ENST00000511352.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	83	2	3.55341	4.655415	5.75742	0.0155135	0.00716661	0.0849828	0.0541871
chr10	889341	889441	4620667	0	-	0.56	(0.523,0.58]	chr10	441455	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LARP4B	ENSG00000107929.16	ENST00000316157.8:ENST00000690516.1:ENST00000476529.5:ENST00000406525.6:ENST00000481118.1:ENST00000412411.1:ENST00000693234.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	141	2	3.42968	4.6552	5.88072	0.0126258	0.0017763	0.0761905	0.021242
chr2	73765533	73765632	1190921	0	-	0.525253	(0.523,0.58]	chr2	129094	23	INTRON	INTRON	DUSP11	ENSG00000144048.11	ENST00000696050.1:ENST00000696051.1:ENST00000272444.8:ENST00000696052.1:ENST00000696053.1:ENST00000696054.1:ENST00000696055.1:ENST00000696056.1:ENST00000480948.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	322	2	4.40034	4.655135	4.90993	0.00184972	1.72685e-4	0.0268565	0.00408359
chr4	914812	914904	2178770	0	-	0.663043	(0.58,1]	chr4	220690	8	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000512325.3:ENST00000510022.5:ENST00000511229.5:ENST00000511983.5:ENST00000628912.1:ENST00000513935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	77	2	3.60807	4.65499	5.70191	0.00964351	0.00495688	0.0659937	0.0425347
chr1	167259605	167259704	263900	0	+	0.393939	(0.39,0.419]	chr1	31153	13	INTRON	INTRON	POU2F1	ENSG00000143190.23	ENST00000559038.5:ENST00000367866.7:ENST00000557909.5:ENST00000271411.8:ENST00000429375.6:ENST00000560232.6:ENST00000442313.5:ENST00000367865.5:ENST00000492850.5:ENST00000541643.7:ENST00000648671.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.48504	4.6547149999999995	4.82439	0.0762206	0.0364893	0.174484	0.139793
chr17	48776962	48777061	6923453	0	-	0.40404	(0.39,0.419]	chr17	705144	65	INTRON	INTRON	TTLL6	ENSG00000170703.16	ENST00000393382.8:ENST00000433608.6:ENST00000490027.5:ENST00000416950.5:ENST00000376681.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.48504	4.6547149999999995	4.82439	0.0762206	0.0364893	0.174484	0.139793
chr7	91941746	91941846	3412370	0	+	0.4	(0.39,0.419]	chr7	329504	2	INTRON	INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000394564.5:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.48504	4.6547149999999995	4.82439	0.0762206	0.0364893	0.174484	0.139793
chr8	30100807	30100905	3787308	0	+	0.418367	(0.39,0.419]	chr8	364777	46	INTRON	INTRON	LEPROTL1	ENSG00000104660.19	ENST00000321250.13:ENST00000518001.1:ENST00000650149.1:ENST00000520682.5:ENST00000442880.6:ENST00000523116.5:ENST00000520739.5:ENST00000518192.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.48504	4.6547149999999995	4.82439	0.0762206	0.0364893	0.174484	0.139793
chr2	108610054	108610154	871714	0	+	0.54	(0.523,0.58]	chr2	98313	24	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1:ENST00000695519.1:ENST00000332345.10:ENST00000695520.1:ENST00000393310.5:ENST00000695521.1:ENST00000410093.5	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.23973	4.65465	5.06957	0.0448011	0.0444247	0.153511	0.140478
chr3	15097918	15098018	1694731	0	-	0.56	(0.523,0.58]	chr3	177100	4	SS5_PROX	SS5_PROX:INTRON	RBSN	ENSG00000131381.12	ENST00000253699.7:ENST00000476527.6:ENST00000449964.6:ENST00000441057.5:ENST00000449050.5:ENST00000507357.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	40	2	4.23973	4.65465	5.06957	0.0448011	0.0444247	0.153511	0.140478
chr6	157642845	157642944	3056468	0	+	0.565657	(0.523,0.58]	chr6	297194	96	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10:ENST00000518214.5:ENST00000341375.12:ENST00000340347.7:ENST00000523706.5:ENST00000517432.5:ENST00000422910.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.23973	4.65465	5.06957	0.0448011	0.0444247	0.153511	0.140478
chr10	75729046	75729146	4523454	0	+	0.47	(0.45,0.485]	chr10	432271	811	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	142	2	3.32306	4.654535	5.98601	0.0119228	0.00264681	0.0741726	0.027979
chr17	72528030	72528130	6963587	0	-	0.6	(0.58,1]	chr17	710377	11	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	92	2	3.09824	4.65446	6.21068	0.0341637	2.44053e-4	0.125129	0.00522003
chr2	203358014	203358113	1000700	0	+	0.555556	(0.523,0.58]	chr2	109857	23	INTRON	INTRON	ABI2	ENSG00000138443.17	ENST00000261017.9:ENST00000447762.5:ENST00000416001.5:ENST00000430418.5:ENST00000295851.10:ENST00000261018.12:ENST00000425253.1:ENST00000424558.5:ENST00000413635.5:ENST00000431886.5:ENST00000444584.1:ENST00000417864.5:ENST00000494215.1:ENST00000376135.5:ENST00000422511.6:ENST00000261016.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	88	2	3.13506	4.654445	6.17383	0.0186841	0.00760615	0.0976296	0.0579698
chr5	74824570	74824669	2692302	0	-	0.242424	[0,0.29]	chr5	265977	102	INTRON	INTRON	FAM169A	ENSG00000198780.13	ENST00000389156.9:ENST00000510496.5:ENST00000687041.1:ENST00000514215.5:ENST00000510609.5:ENST00000513277.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	81	2	3.83716	4.65444	5.47172	0.0158465	0.00325108	0.0859576	0.03199
chr16	82036388	82036488	6510470	0	+	0.34	(0.33,0.36]	chr16	646054	3	INTRON	INTRON	HSD17B2	ENSG00000086696.11	ENST00000563491.5:ENST00000199936.9:ENST00000566213.1:ENST00000569351.2	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.102	4.654435	5.20687	0.0642879	0.041040600000000003	0.184676	0.136289
chr11	65429762	65429862	4871639	0	+	0.41	(0.39,0.419]	chr11	468177	71	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	55	6134	2	4.19657	4.654375	5.11218	1.53089e-4	3.89973e-5	0.00689544	0.0013666
chr1	229293969	229294067	358845	0	+	0.571429	(0.523,0.58]	chr1	40523	48	INTRON	INTRON	RAB4A	ENSG00000168118.12	ENST00000618010.4:ENST00000366690.5:ENST00000473894.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.5249	4.65437	4.78384	0.0663135	0.0266135	0.162385	0.118113
chr12	6768672	6768767	5165703	0	+	0.547368	(0.523,0.58]	chr12	502315	16	INTRON	INTRON	PTMS	ENSG00000159335.18	ENST00000540667.5:ENST00000309083.8:ENST00000389462.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.5249	4.65437	4.78384	0.0663135	0.0266135	0.162385	0.118113
chr13	75814865	75814965	5614830	0	+	0.58	(0.523,0.58]	chr13	552751	53	INTRON	INTRON	LMO7	ENSG00000136153.20	ENST00000341547.8:ENST00000357063.7:ENST00000377499.9:ENST00000377534.8:ENST00000321797.12:ENST00000526202.5:ENST00000465261.6:ENST00000497947.6:ENST00000489941.6:ENST00000525373.5:ENST00000447038.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.5249	4.65437	4.78384	0.0663135	0.0266135	0.162385	0.118113
chr17	17568087	17568186	6865354	0	-	0.535354	(0.523,0.58]	chr17	695822	24	INTRON	INTRON	PEMT	ENSG00000133027.18	ENST00000255389.10:ENST00000435340.6:ENST00000395783.5:ENST00000395782.5:ENST00000395781.6:ENST00000580147.5:ENST00000421096.5:ENST00000472446.1:ENST00000461404.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.5249	4.65437	4.78384	0.0663135	0.0266135	0.162385	0.118113
chr19	16378247	16378346	7343713	0	-	0.555556	(0.523,0.58]	chr19	760674	6	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.5249	4.65437	4.78384	0.0663135	0.0266135	0.162385	0.118113
chr4	23775976	23776076	2208446	0	-	0.39	(0.36,0.39]	chr4	223243	104	INTRON	INTRON	PPARGC1A	ENSG00000109819.9	ENST00000509702.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	112	2	3.61283	4.654285	5.69574	0.0214602	0.00299965	0.100496	0.030427
chr2	25329518	25329617	1105859	0	-	0.616162	(0.58,1]	chr2	120785	4	INTRON	INTRON	DNMT3A	ENSG00000119772.19	ENST00000264709.7:ENST00000321117.10:ENST00000380756.7:ENST00000406659.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	78	2	3.95573	4.653935000000001	5.35214	0.0181452	0.00191878	0.0921579	0.0223755
chr10	122421033	122421132	4602240	0	+	0.323232	(0.29,0.33]	chr10	440067	32	EXON_MRNA	EXON_MRNA:INTRON	PLEKHA1	ENSG00000107679.15	ENST00000368990.8:ENST00000368989.6:ENST00000392799.7:ENST00000368988.5:ENST00000433307.2:ENST00000481451.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.2311	4.65393	5.07676	0.0471437	0.0412683	0.156915	0.136301
chr7	91982157	91982257	3412782	0	+	0.33	(0.29,0.33]	chr7	329534	8	INTRON	INTRON	AKAP9	ENSG00000127914.19	ENST00000680534.1:ENST00000680513.1:ENST00000680072.1:ENST00000679821.1:ENST00000679554.1:ENST00000356239.8:ENST00000679521.1:ENST00000680181.1:ENST00000681722.1:ENST00000680766.1:ENST00000679448.1:ENST00000681412.1:ENST00000680047.1:ENST00000679474.1:ENST00000680952.1:ENST00000679457.1:ENST00000679722.1:ENST00000680074.1:ENST00000493453.1:ENST00000394564.5:ENST00000674381.2:ENST00000359028.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.2311	4.65393	5.07676	0.0471437	0.0412683	0.156915	0.136301
chr2	239349180	239349279	1392202	0	-	0.69697	(0.58,1]	chr2	148752	247	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	93	2	3.51497	4.6539	5.79283	0.0161632	8.4246e-4	0.0872435	0.0125912
chr1	246116305	246116404	701945	0	-	0.323232	(0.29,0.33]	chr1	82410	200	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.51618	4.653585	4.79099	0.061706	0.0285091	0.158854	0.123012
chr13	98533697	98533797	5747858	0	-	0.49	(0.485,0.523]	chr13	563357	118	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.23628	4.653135	5.06999	0.045492200000000003	0.0445854	0.154539	0.140478
chr17	4854416	4854516	6672097	0	+	0.49	(0.485,0.523]	chr17	668609	204	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.23628	4.653135	5.06999	0.045492200000000003	0.0445854	0.154539	0.140478
chr4	23775677	23775777	2208443	0	-	0.5	(0.485,0.523]	chr4	223243	101	INTRON	INTRON	PPARGC1A	ENSG00000109819.9	ENST00000509702.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	40	2	4.23628	4.653135	5.06999	0.045492200000000003	0.0445854	0.154539	0.140478
chr6	2264287	2264385	2824566	0	+	0.489796	(0.485,0.523]	chr6	277255	8	EXON_LNCRNA	EXON_LNCRNA:INTRON	GMDS-DT	ENSG00000250903.10	ENST00000657072.1:ENST00000529893.6:ENST00000659523.1:ENST00000659643.1:ENST00000660978.1:ENST00000691004.1:ENST00000664738.1:ENST00000532124.6:ENST00000691547.1:ENST00000663428.1:ENST00000654526.1:ENST00000670895.1:ENST00000532564.8:ENST00000685772.1:ENST00000687264.1:ENST00000660533.1:ENST00000531092.6:ENST00000524770.6:ENST00000657589.1:ENST00000607519.2:ENST00000456943.6:ENST00000530833.6:ENST00000525811.5:ENST00000534441.5:ENST00000533653.5:ENST00000534468.1:ENST00000530346.6:ENST00000662000.1:ENST00000665610.1:ENST00000654970.1	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.23628	4.653135	5.06999	0.045492200000000003	0.0445854	0.154539	0.140478
chr11	70631629	70631729	5060589	0	-	0.56	(0.523,0.58]	chr11	492663	1283	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	83	2	3.51663	4.652935	5.78924	0.0147166	0.00782908	0.0826843	0.0574276
chr14	99509561	99509661	6051957	0	-	0.49	(0.485,0.523]	chr14	593858	95	UTR3	UTR3:EXON_MRNA	CCDC85C	ENSG00000205476.9	ENST00000380243.9	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.52142	4.652839999999999	4.78426	0.0660335	0.0273555	0.162385	0.119337
chr2	121479916	121480016	1262525	0	-	0.49	(0.485,0.523]	chr2	136083	96	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.52142	4.652839999999999	4.78426	0.0660335	0.0273555	0.162385	0.119337
chr5	60882974	60883074	2681539	0	-	0.49	(0.485,0.523]	chr5	264612	79	INTRON	INTRON	ERCC8	ENSG00000049167.16	ENST00000676185.1:ENST00000682217.1:ENST00000675042.2:ENST00000381118.7:ENST00000675378.1:ENST00000643034.1:ENST00000462279.5:ENST00000647431.2:ENST00000682375.1:ENST00000683216.1:ENST00000439176.6:ENST00000683052.1:ENST00000643708.1:ENST00000265038.10:ENST00000675452.2:ENST00000683460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.52142	4.652839999999999	4.78426	0.0660335	0.0273555	0.162385	0.119337
chr13	93940335	93940435	5624917	0	+	0.46	(0.45,0.485]	chr13	553064	1094	INTRON	INTRON	GPC6	ENSG00000183098.11	ENST00000377047.9	protein_coding	protein_coding	protein_coding	protein_coding	1	100	2	4.46808	4.652815	4.83755	0.06646	7.25143e-4	0.162385	0.0113618
chr17	15464264	15464364	6860077	0	-	0.55	(0.523,0.58]	chr17	695067	108	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	111	2	3.23118	4.65259	6.074	0.00906277	0.00547248	0.0637469	0.0454065
chr18	6118208	6118308	7110896	0	-	0.48	(0.45,0.485]	chr18	723846	243	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000400105.6:ENST00000317931.12:ENST00000400104.7	protein_coding	protein_coding	protein_coding	protein_coding	1	98	2	2.81608	4.65216	6.48824	0.0375071	0.00499158	0.139823	0.0463896
chr1	204124957	204125057	322589	0	+	0.53	(0.523,0.58]	chr1	36332	1	SS5_PROX	SS5_PROX:INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000618875.4:ENST00000272193.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	111	2	3.25639	4.6521550000000005	6.04792	0.00948306	0.00513089	0.0656057	0.0435186
chr8	66667901	66668001	3836782	0	+	0.36	(0.33,0.36]	chr8	368382	2	SS5_PROX	SS5_PROX:INTRON	C8orf44	ENSG00000288596.2	ENST00000521113.1:ENST00000661636.1:ENST00000521889.5	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.57035	4.6520150000000005	4.73368	0.0945416	0.0216127	0.188571	0.105648
chr13	20046558	20046657	5543692	0	+	0.222222	[0,0.29]	chr13	547265	93	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000382883.7:ENST00000382870.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	40	2	4.14609	4.651994999999999	5.1579	0.0482299	0.0269673	0.159496	0.112113
chr17	7110764	7110862	6847741	0	-	0.428571	(0.419,0.45]	chr17	693423	15	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	245	2	4.26314	4.651915	5.04069	0.0079416	1.99954e-4	0.0596361	0.00453435
chr2	26091963	26092063	731399	0	+	0.5	(0.485,0.523]	chr2	85215	493	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	113	2	2.96979	4.65184	6.33389	0.0105977	0.00567224	0.069518	0.0496143
chr17	66512465	66512565	6785530	0	+	0.49	(0.485,0.523]	chr17	684238	158	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	83	2	3.68058	4.65179	5.623	0.0192139	0.0053378	0.095424900000000007	0.0447225
chr20	21329800	21329890	7449253	0	+	0.388889	(0.36,0.39]	chr20	775034	8	INTRON	INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	4	162	2	2.716	4.65169	6.58738	0.0100379	0.00521906	0.0670367	0.0475638
chr1	146154463	146154561	579288	0	-	0.479592	(0.45,0.485]	chr1	66467	64	INTRON	INTRON	NOTCH2NLA	ENSG00000264343.7	ENST00000579793.6	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.59225	4.651675	4.7111	0.0781398	0.0259502	0.175203	0.116361
chr10	79163032	79163132	4532987	0	+	0.48	(0.45,0.485]	chr10	432438	5	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.59225	4.651675	4.7111	0.0781398	0.0259502	0.175203	0.116361
chr16	12403147	12403247	6393904	0	+	0.46	(0.45,0.485]	chr16	631984	3	SS3_PROX	SS3_PROX:INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5:ENST00000562510.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.59225	4.651675	4.7111	0.0781398	0.0259502	0.175203	0.116361
chr10	31387266	31387366	4472433	0	+	0.53	(0.523,0.58]	chr10	427895	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZEB1	ENSG00000148516.23	ENST00000488625.6:ENST00000560196.5:ENST00000542879.5:ENST00000561304.5:ENST00000320985.14:ENST00000560721.6:ENST00000559858.5:ENST00000558440.5:ENST00000437844.6:ENST00000424869.6:ENST00000542815.7:ENST00000558863.5:ENST00000561212.5:ENST00000558655.5:ENST00000561061.5:ENST00000559496.5:ENST00000446923.7:ENST00000557827.5:ENST00000606671.5:ENST00000606161.1:ENST00000493835.5:ENST00000560909.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.34118	4.651574999999999	4.96197	0.0521137	0.0372357	0.148503	0.139793
chr12	109120484	109120584	5321598	0	+	0.53	(0.523,0.58]	chr12	518475	34	INTRON	INTRON	ENSG00000256139:ACACB	ENSG00000256139.2:ENSG00000076555.16	ENST00000541704.2:ENST00000338432.12	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	39	2	4.34118	4.651574999999999	4.96197	0.0521137	0.0372357	0.148503	0.139793
chr22	25488423	25488523	7701428	0	+	0.57	(0.523,0.58]	chr22	805972	269	INTRON	INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000686640.1:ENST00000509460.3:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	39	2	4.34118	4.651574999999999	4.96197	0.0521137	0.0372357	0.148503	0.139793
chr7	102467038	102467138	3439606	0	+	0.56	(0.523,0.58]	chr7	332820	3	SS3_PROX	SS3_PROX:INTRON	LRWD1	ENSG00000161036.13	ENST00000463739.5:ENST00000292616.10:ENST00000464107.5:ENST00000473880.5:ENST00000485808.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.34118	4.651574999999999	4.96197	0.0521137	0.0372357	0.148503	0.139793
chr9	134365582	134365682	4261079	0	+	0.6	(0.58,1]	chr9	406311	386	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	85	2	3.03676	4.65137	6.26598	0.0198789	0.00318361	0.100864	0.0360488
chr7	138507006	138507105	3502471	0	+	0.393939	(0.39,0.419]	chr7	337502	22	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	108	2	2.86613	4.651009999999999	6.43589	0.0665161	4.66094e-4	0.162469	0.00828434
chr4	128171886	128171985	2131025	0	+	0.343434	(0.33,0.36]	chr4	216440	92	INTRON	INTRON	LARP1B	ENSG00000138709.19	ENST00000326639.11:ENST00000508819.5:ENST00000649983.1:ENST00000507259.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.40703	4.650855	4.89468	0.0629186	0.0390931	0.160778	0.142605
chr17	32735105	32735205	6885904	0	-	0.31	(0.29,0.33]	chr17	698896	2	SS3_PROX	SS3_PROX:INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000579584.5:ENST00000577252.5:ENST00000580538.5:ENST00000584232.5:ENST00000583611.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.33251	4.650825	4.96914	0.0481918	0.0396433	0.144601	0.143388
chr15	92971264	92971364	6190541	0	+	0.35	(0.33,0.36]	chr15	609439	1	SS3_PROX	SS3_PROX:INTRON	CHD2	ENSG00000173575.22	ENST00000626874.2:ENST00000394196.9:ENST00000635856.1:ENST00000625990.3:ENST00000637572.1:ENST00000636881.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.49572	4.650345	4.80497	0.103264	0.0188359	0.197541	0.0980631
chr2	156178791	156178891	1286617	0	-	0.36	(0.33,0.36]	chr2	138345	278	INTRON	INTRON	LINC01876	ENSG00000226383.7	ENST00000635799.1:ENST00000662073.1:ENST00000659502.1:ENST00000428651.2:ENST00000661513.1:ENST00000657334.1:ENST00000638047.1:ENST00000637554.1:ENST00000636956.1:ENST00000637665.1:ENST00000637476.1:ENST00000637324.1	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.49572	4.650345	4.80497	0.103264	0.0188359	0.197541	0.0980631
chr6	128329306	128329406	3255257	0	-	0.35	(0.33,0.36]	chr6	315209	66	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000531050.5:ENST00000524534.5:ENST00000495748.5:ENST00000525459.1:ENST00000392449.4:ENST00000532751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.49572	4.650345	4.80497	0.103264	0.0188359	0.197541	0.0980631
chr16	77193861	77193946	6495081	0	+	0.623529	(0.58,1]	chr16	645520	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MON1B	ENSG00000103111.15	ENST00000569610.5:ENST00000567291.5:ENST00000566963.1:ENST00000564006.5:ENST00000248248.8:ENST00000439557.6:ENST00000545553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.29454	4.650195	5.00585	0.0323732	0.0305531	0.126768	0.121593
chr16	85430419	85430518	6517375	0	+	0.656566	(0.58,1]	chr16	646391	711	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.29454	4.650195	5.00585	0.0323732	0.0305531	0.126768	0.121593
chr16	85591528	85591627	6518988	0	+	0.69697	(0.58,1]	chr16	646396	348	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.29454	4.650195	5.00585	0.0323732	0.0305531	0.126768	0.121593
chr19	1835947	1836047	7307280	0	-	0.61	(0.58,1]	chr19	753393	47	INTRON	INTRON	REXO1	ENSG00000079313.15	ENST00000170168.9:ENST00000587524.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.29454	4.650195	5.00585	0.0323732	0.0305531	0.126768	0.121593
chr20	3799512	3799603	7421526	0	+	0.659341	(0.58,1]	chr20	773102	7	INTRON	INTRON	CDC25B	ENSG00000101224.18	ENST00000344256.10:ENST00000379598.9:ENST00000467519.5:ENST00000439880.6:ENST00000245960.10:ENST00000340833.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.29454	4.650195	5.00585	0.0323732	0.0305531	0.126768	0.121593
chr21	43720071	43720166	7623792	0	+	0.652632	(0.58,1]	chr21	796688	3	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000476084.1:ENST00000470029.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.29454	4.650195	5.00585	0.0323732	0.0305531	0.126768	0.121593
chr4	715837	715937	1993786	0	+	0.6	(0.58,1]	chr4	203088	95	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.29454	4.650195	5.00585	0.0323732	0.0305531	0.126768	0.121593
chr5	138799840	138799940	2546219	0	+	0.36	(0.33,0.36]	chr5	252819	84	INTRON	INTRON	CTNNA1	ENSG00000044115.21	ENST00000517980.5:ENST00000522227.5:ENST00000523912.5:ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518910.5:ENST00000519309.5:ENST00000519113.5:ENST00000520158.5:ENST00000518825.5:ENST00000518585.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	87	2	3.34409	4.65016	5.95623	0.0131368	0.0129408	0.0788915	0.0775979
chr13	113334265	113334365	5753273	0	-	0.57	(0.523,0.58]	chr13	564094	78	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.13061	4.65015	5.16969	0.0533354	0.0387762	0.167062	0.131324
chr9	124333308	124333408	4236264	0	+	0.58	(0.523,0.58]	chr9	402147	55	INTRON	INTRON	NEK6	ENSG00000119408.17	ENST00000373603.5:ENST00000540326.5:ENST00000320246.10:ENST00000373600.7:ENST00000545174.5:ENST00000444973.5:ENST00000454453.5:ENST00000425237.5:ENST00000546191.5:ENST00000422297.5:ENST00000539416.5:ENST00000394199.6	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.13061	4.65015	5.16969	0.0533354	0.0387762	0.167062	0.131324
chr9	134353107	134353207	4260954	0	+	0.55	(0.523,0.58]	chr9	406311	261	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.13061	4.65015	5.16969	0.0533354	0.0387762	0.167062	0.131324
chr1	43567395	43567494	107113	0	+	0.515152	(0.485,0.523]	chr1	13192	131	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.33772	4.650055	4.96239	0.0518747	0.03818	0.148503	0.140822
chr1	235585034	235585132	692173	0	-	0.489796	(0.485,0.523]	chr1	81475	8	INTRON	INTRON	GNG4	ENSG00000168243.11	ENST00000391854.7:ENST00000450593.5:ENST00000366598.8:ENST00000366597.5:ENST00000484517.2	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.33772	4.650055	4.96239	0.0518747	0.03818	0.148503	0.140822
chr13	113030121	113030219	5655930	0	+	0.520408	(0.485,0.523]	chr13	555157	32	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486806.1:ENST00000473345.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.33772	4.650055	4.96239	0.0518747	0.03818	0.148503	0.140822
chr13	113045836	113045931	5656091	0	+	0.505263	(0.485,0.523]	chr13	555176	6	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000480321.1:ENST00000397021.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.33772	4.650055	4.96239	0.0518747	0.03818	0.148503	0.140822
chr5	139658855	139658954	2549749	0	+	0.494949	(0.485,0.523]	chr5	253168	73	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.33772	4.650055	4.96239	0.0518747	0.03818	0.148503	0.140822
chr17	17727757	17727857	6689313	0	+	0.58	(0.523,0.58]	chr17	671344	32	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	1	83	2	3.78755	4.65001	5.51247	0.0230387	0.00401039	0.102982	0.0371192
chr14	50800016	50800116	5978090	0	-	0.35	(0.33,0.36]	chr14	586172	51	INTRON	INTRON	NIN	ENSG00000100503.26	ENST00000530997.7:ENST00000476352.5:ENST00000674030.1:ENST00000673657.1:ENST00000382043.8:ENST00000324330.13:ENST00000382041.7:ENST00000453196.6:ENST00000453401.6:ENST00000486950.5:ENST00000673852.1:ENST00000674061.1:ENST00000496749.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.64131	4.65	4.65869	0.0867669	0.0248983	0.182221	0.114418
chr17	15464463	15464563	6860079	0	-	0.52	(0.485,0.523]	chr17	695067	110	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	219	2	4.26564	4.649785	5.03393	0.00564361	1.22943e-4	0.0495171	0.00320768
chr4	140287082	140287181	2327527	0	-	0.393939	(0.39,0.419]	chr4	233796	35	EXON_LNCRNA	EXON_LNCRNA:INTRON	SCOC-AS1	ENSG00000196951.12	ENST00000512692.7:ENST00000658255.1:ENST00000664103.1	lncRNA	lncRNA	lncRNA	lncRNA	0	41	2	4.20027	4.649665	5.09906	0.0583327	0.0535378	0.175217	0.150319
chr20	58688946	58689045	7498567	0	+	0.565657	(0.523,0.58]	chr20	781977	96	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1:ENST00000413559.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	1	84	2	3.90605	4.64966	5.39327	0.0277354	0.00295607	0.112851	0.0300958
chr14	54402277	54402377	5818928	0	+	0.38	(0.36,0.39]	chr14	568946	3	INTRON	INTRON	CDKN3	ENSG00000100526.21	ENST00000555837.5:ENST00000543789.6:ENST00000442975.6:ENST00000458126.6:ENST00000556102.6:ENST00000335183.11:ENST00000541304.5:ENST00000216414.12:ENST00000556305.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.30212	4.64942	4.99672	0.0604395	0.0494303	0.160725	0.158506
chr16	29265115	29265215	6433488	0	+	0.38	(0.36,0.39]	chr16	636745	130	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.30212	4.64942	4.99672	0.0604395	0.0494303	0.160725	0.158506
chr19	34392577	34392673	7243276	0	+	0.489583	(0.485,0.523]	chr19	741719	5	EXON_MRNA	EXON_MRNA:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000589985.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	241	2	4.37429	4.64942	4.92455	0.00156853	8.506e-4	0.0244717	0.0126678
chr2	53973810	53973910	794937	0	+	0.37	(0.36,0.39]	chr2	90701	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ACYP2	ENSG00000170634.13	ENST00000458030.3:ENST00000606082.5:ENST00000422521.2:ENST00000607452.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.30212	4.64942	4.99672	0.0604395	0.0494303	0.160725	0.158506
chr3	29252645	29252745	1725593	0	-	0.39	(0.36,0.39]	chr3	178898	1955	INTRON	INTRON	RBMS3-AS3	ENSG00000235904.3	ENST00000655701.1	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.30212	4.64942	4.99672	0.0604395	0.0494303	0.160725	0.158506
chr9	105277278	105277378	4205922	0	+	0.39	(0.36,0.39]	chr9	399474	320	INTRON	INTRON	SLC44A1	ENSG00000070214.16	ENST00000374724.1:ENST00000374723.5:ENST00000470972.5:ENST00000374720.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.30212	4.64942	4.99672	0.0604395	0.0494303	0.160725	0.158506
chr1	3472191	3472291	5833	0	+	0.68	(0.58,1]	chr1	1235	4	SS5_PROX	SS5_PROX:INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5:ENST00000464620.1:ENST00000418137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.18518	4.6493649999999995	5.11355	0.0374658	0.0271806	0.139793	0.112113
chr1	228142029	228142129	358004	0	+	0.64	(0.58,1]	chr1	40400	2	SS5_PROX	SS5_PROX:INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.18518	4.6493649999999995	5.11355	0.0374658	0.0271806	0.139793	0.112113
chr7	221548	221648	3305870	0	+	0.69	(0.58,1]	chr7	320161	122	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.18518	4.6493649999999995	5.11355	0.0374658	0.0271806	0.139793	0.112113
chr9	133930077	133930176	4429703	0	-	0.59596	(0.58,1]	chr9	423324	18	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1:ENST00000472905.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.18518	4.6493649999999995	5.11355	0.0374658	0.0271806	0.139793	0.112113
chr9	134371271	134371371	4261136	0	+	0.67	(0.58,1]	chr9	406311	443	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.18518	4.6493649999999995	5.11355	0.0374658	0.0271806	0.139793	0.112113
chr2	235999710	235999810	1067613	0	+	0.46	(0.45,0.485]	chr2	115748	307	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5:ENST00000418654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	107	2	3.57937	4.649325	5.71928	0.0206537	0.00219685	0.0984724	0.0245167
chr16	4081670	4081770	6541447	0	-	0.68	(0.58,1]	chr16	650517	276	INTRON	INTRON	ADCY9	ENSG00000162104.10	ENST00000294016.8:ENST00000571467.1:ENST00000572288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	77	2	3.85993	4.648725	5.43752	0.0156166	0.00251049	0.0849828	0.026941
chr1	146984498	146984591	232225	0	+	0.516129	(0.485,0.523]	chr1	25695	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF12	ENSG00000268043.8	ENST00000617931.4:ENST00000611443.4:ENST00000617844.4:ENST00000439206.6:ENST00000613714.2	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.12717	4.648645	5.17012	0.0545434	0.038581	0.167824	0.131324
chr1	149538354	149538443	239019	0	+	0.505618	(0.485,0.523]	chr1	26862	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF19	ENSG00000271383.8	ENST00000651566.2:ENST00000611931.4:ENST00000612881.4:ENST00000369227.7	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.12717	4.648645	5.17012	0.0545434	0.038581	0.167824	0.131324
chr10	100971273	100971367	4569835	0	+	0.585106	(0.58,1]	chr10	436226	10	INTRON	INTRON	SEMA4G	ENSG00000095539.15	ENST00000519649.5:ENST00000521006.5:ENST00000518124.5:ENST00000518244.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	124	2	2.81461	4.64848	6.48235	0.00731787	0.00202884	0.0550721	0.0283135
chr11	67242315	67242411	4879672	0	+	0.395833	(0.39,0.419]	chr11	469885	16	INTRON	INTRON	KDM2A	ENSG00000173120.15	ENST00000529006.7:ENST00000398645.6:ENST00000308783.9:ENST00000526258.5:ENST00000531696.5:ENST00000525041.5:ENST00000530342.2:ENST00000517637.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.30157	4.6484749999999995	4.99538	0.0613573	0.0496288	0.160725	0.158506
chr2	39421195	39421295	1129166	0	-	0.4	(0.39,0.419]	chr2	123687	415	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000341681.9:ENST00000429397.5:ENST00000437968.1:ENST00000484274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.30157	4.6484749999999995	4.99538	0.0613573	0.0496288	0.160725	0.158506
chr16	16155854	16155954	6556412	0	-	0.25	[0,0.29]	chr16	653058	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.54061	4.64844	4.75627	0.050276	0.0235212	0.148161	0.110758
chr6	52575496	52575595	3148433	0	-	0.545455	(0.523,0.58]	chr6	307028	393	INTRON	INTRON	TRAM2	ENSG00000065308.5	ENST00000182527.4	protein_coding	protein_coding	protein_coding	protein_coding	2	113	2	2.92019	4.648095	6.376	0.0117692	0.00529293	0.0743709	0.047841
chr15	52777501	52777600	6267293	0	-	0.444444	(0.419,0.45]	chr15	617751	193	INTRON	INTRON	ONECUT1	ENSG00000169856.9	ENST00000305901.7:ENST00000561401.3:ENST00000560699.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	90	2	3.27753	4.647935	6.01834	0.0163857	0.015582500000000001	0.0910838	0.0849828
chr10	133350286	133350386	4783437	0	-	0.61	(0.58,1]	chr10	457517	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000226699	ENSG00000226699.1	ENST00000452591.1	lncRNA	lncRNA	lncRNA	lncRNA	1	93	2	3.5406	4.64783	5.75506	0.0154024	9.38062e-4	0.0849828	0.0135546
chr16	8684250	8684350	6381232	0	+	0.56	(0.523,0.58]	chr16	631147	8	INTRON	INTRON	ABAT	ENSG00000183044.12	ENST00000564714.5:ENST00000268251.13:ENST00000563992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	101	2	4.57635	4.647785	4.71922	0.0721601	4.64368e-4	0.168159	0.00826853
chr11	70811368	70811468	5062397	0	-	0.53	(0.523,0.58]	chr11	492713	38	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	101	2	3.35121	4.64755	5.94389	0.0284134	0.0010207	0.114906	0.0143498
chr10	98162582	98162682	4564686	0	+	0.4	(0.39,0.419]	chr10	435517	3	SS3_PROX	SS3_PROX:INTRON	R3HCC1L	ENSG00000166024.14	ENST00000370584.7:ENST00000298999.8	protein_coding	protein_coding	protein_coding	protein_coding	1	92	2	3.09555	4.64752	6.19949	0.0231436	0.0103045	0.109883	0.0684871
chr6	1680825	1680925	3079678	0	-	0.42	(0.419,0.45]	chr6	299464	5	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000533279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	125	2	3.59929	4.647345	5.6954	0.0254103	0.0028371	0.108573	0.0293146
chr17	76481969	76482045	6976665	0	-	0.486842	(0.485,0.523]	chr17	712219	2	SS3_PROX	SS3_PROX:INTRON	RHBDF2	ENSG00000129667.13	ENST00000675367.1:ENST00000313080.8:ENST00000591885.5:ENST00000674875.1:ENST00000592123.5:ENST00000592378.5:ENST00000585989.5:ENST00000589526.5:ENST00000591697.5:ENST00000585701.5:ENST00000591192.1:ENST00000590322.1:ENST00000590288.1:ENST00000591255.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	104	2	3.56212	4.647315000000001	5.73251	0.0199384	0.00184599	0.0967486	0.0217471
chr3	28278139	28278238	1432613	0	+	0.373737	(0.36,0.39]	chr3	152954	144	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2:ENST00000396610.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	88	2	3.80233	4.647285	5.49224	0.0304242	0.00480386	0.11845	0.0416515
chr13	97363535	97363635	5632226	0	+	0.44	(0.419,0.45]	chr13	553214	55	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000449284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	145	2	3.10277	4.647205	6.19164	0.0118587	0.00566921	0.0740271	0.0465866
chr18	2592936	2593035	7000839	0	+	0.363636	(0.36,0.39]	chr18	715533	24	INTRON	INTRON	NDC80	ENSG00000080986.13	ENST00000261597.9	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	3.34723	4.6468050000000005	5.9463800000000004	0.0151971	0.0136148	0.084474	0.0811697
chr14	89204335	89204434	6026138	0	-	0.515152	(0.485,0.523]	chr14	591423	135	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000555010.1:ENST00000557718.5:ENST00000553353.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	221	2	4.49779	4.646795	4.7958	0.00362774	2.51583e-4	0.0387545	0.00534704
chr1	226151245	226151343	674767	0	-	0.428571	(0.419,0.45]	chr1	79409	41	INTRON	INTRON	ACBD3	ENSG00000182827.9	ENST00000366812.6	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.47684	4.646775	4.81671	0.08258	0.0389508	0.179396	0.142578
chr13	32520773	32520872	5683416	0	-	0.424242	(0.419,0.45]	chr13	558074	24	INTRON	INTRON	N4BP2L2	ENSG00000244754.9	ENST00000357505.10:ENST00000399396.7:ENST00000504114.5:ENST00000509076.1:ENST00000446957.6:ENST00000674456.1:ENST00000674161.1:ENST00000674422.1:ENST00000674272.1:ENST00000674452.1:ENST00000674384.1:ENST00000505213.5:ENST00000674219.1:ENST00000267068.5:ENST00000674349.1:ENST00000674428.1:ENST00000503814.2:ENST00000674465.1:ENST00000674421.1:ENST00000674180.1:ENST00000674297.1:ENST00000674293.1:ENST00000674480.1:ENST00000674377.1:ENST00000674437.1:ENST00000674327.1:ENST00000674399.1:ENST00000674196.1:ENST00000674163.1:ENST00000511143.5:ENST00000674484.1:ENST00000475731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.47684	4.646775	4.81671	0.08258	0.0389508	0.179396	0.142578
chr19	57694735	57694834	7298440	0	+	0.444444	(0.419,0.45]	chr19	751723	42	INTRON	INTRON	ZNF551	ENSG00000204519.11	ENST00000596085.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.47684	4.646775	4.81671	0.08258	0.0389508	0.179396	0.142578
chr2	72967523	72967623	1188467	0	-	0.43	(0.419,0.45]	chr2	128797	2	SS3_PROX	SS3_PROX:INTRON	SFXN5	ENSG00000144040.13	ENST00000272433.7:ENST00000461352.5:ENST00000474528.5:ENST00000495208.5:ENST00000482289.5:ENST00000490056.5:ENST00000411783.5:ENST00000410065.5:ENST00000482542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.47684	4.646775	4.81671	0.08258	0.0389508	0.179396	0.142578
chr3	64006268	64006368	1495471	0	+	0.43	(0.419,0.45]	chr3	160393	2	SS5_PROX	SS5_PROX:INTRON	PSMD6-AS2	ENSG00000239653.1	ENST00000472046.1	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.47684	4.646775	4.81671	0.08258	0.0389508	0.179396	0.142578
chr5	126779064	126779164	2526233	0	+	0.45	(0.419,0.45]	chr5	250720	8	INTRON	INTRON	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000492190.5:ENST00000395354.1:ENST00000463908.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.47684	4.646775	4.81671	0.08258	0.0389508	0.179396	0.142578
chr6	110737033	110737133	3233658	0	-	0.44	(0.419,0.45]	chr6	313452	148	INTRON	INTRON	CDK19	ENSG00000155111.15	ENST00000323817.7:ENST00000368911.8:ENST00000413605.6:ENST00000457688.5:ENST00000463016.1:ENST00000460913.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.47684	4.646775	4.81671	0.08258	0.0389508	0.179396	0.142578
chr11	70536430	70536530	5059637	0	-	0.69	(0.58,1]	chr11	492663	331	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	82	2	3.1491	4.646685	6.14427	0.0154006	0.00407804	0.0869771	0.0413652
chr8	143322739	143322834	4095555	0	-	0.631579	(0.58,1]	chr8	389125	10	INTRON	INTRON	TOP1MT	ENSG00000184428.13	ENST00000329245.9:ENST00000521193.5:ENST00000519148.5:ENST00000523676.5:ENST00000518951.6:ENST00000519139.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	105	2	3.62605	4.646515	5.66698	0.0102927	0.00138924	0.0684871	0.0179324
chr17	1074373	1074471	6827379	0	-	0.622449	(0.58,1]	chr17	690202	3	INTRON	INTRON	ABR	ENSG00000159842.16	ENST00000574139.7:ENST00000302538.10:ENST00000544583.6:ENST00000574437.5:ENST00000291107.6:ENST00000536794.6:ENST00000576964.5:ENST00000571945.5:ENST00000573667.1:ENST00000570441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.54927	4.646364999999999	4.74346	0.0643046	0.0121457	0.161669	0.0754623
chr17	78798807	78798907	6979438	0	-	0.65	(0.58,1]	chr17	712647	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	USP36	ENSG00000055483.20	ENST00000588130.5:ENST00000587010.5:ENST00000589225.5:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.54927	4.646364999999999	4.74346	0.0643046	0.0121457	0.161669	0.0754623
chr20	25499144	25499244	7539947	0	-	0.61	(0.58,1]	chr20	787030	4	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.54927	4.646364999999999	4.74346	0.0643046	0.0121457	0.161669	0.0754623
chr21	45456303	45456399	7630827	0	+	0.729167	(0.58,1]	chr21	797659	8	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.54927	4.646364999999999	4.74346	0.0643046	0.0121457	0.161669	0.0754623
chr3	13197626	13197726	1691118	0	-	0.6	(0.58,1]	chr3	176566	331	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.54927	4.646364999999999	4.74346	0.0643046	0.0121457	0.161669	0.0754623
chr4	17627853	17627953	2017156	0	+	0.6	(0.58,1]	chr4	206143	23	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MED28	ENSG00000118579.13	ENST00000237380.12:ENST00000503945.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.54927	4.646364999999999	4.74346	0.0643046	0.0121457	0.161669	0.0754623
chr6	12061017	12061117	2854629	0	+	0.6	(0.58,1]	chr6	278961	219	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.54927	4.646364999999999	4.74346	0.0643046	0.0121457	0.161669	0.0754623
chr9	93619869	93619969	4184088	0	+	0.59	(0.58,1]	chr9	397705	426	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.54927	4.646364999999999	4.74346	0.0643046	0.0121457	0.161669	0.0754623
chr21	45454422	45454522	7630807	0	+	0.61	(0.58,1]	chr21	797656	486	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	3	123	2	2.89304	4.646345	6.39965	0.00592504	0.00241374	0.047896	0.0309229
chr13	113055104	113055204	5656188	0	+	0.3	(0.29,0.33]	chr13	555189	3	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	3.28897	4.64529	6.00161	0.0137233	0.00923185	0.0814223	0.0644666
chr13	41879508	41879607	5699276	0	-	0.292929	(0.29,0.33]	chr13	559222	107	INTRON	INTRON	VWA8	ENSG00000102763.18	ENST00000379310.8:ENST00000281496.6	protein_coding	protein_coding	protein_coding	protein_coding	1	99	2	3.1738	4.645155	6.11651	0.0362747	7.13924e-4	0.127965	0.0112151
chr20	35051091	35051190	7550846	0	-	0.333333	(0.33,0.36]	chr20	788320	7	INTRON	INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	3	144	2	2.49275	4.644864999999999	6.79698	0.0215202	0.00296844	0.105473	0.0346919
chr22	29904852	29904952	7709576	0	+	0.42	(0.419,0.45]	chr22	806655	211	INTRON	INTRON	MTMR3	ENSG00000100330.16	ENST00000333027.7:ENST00000401950.7:ENST00000495098.5:ENST00000445401.5:ENST00000323630.9:ENST00000351488.7:ENST00000415511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	88	2	3.56166	4.6448	5.72794	0.0242188	0.00882182	0.106588	0.061625
chr16	952842	952942	6531561	0	-	0.6	(0.58,1]	chr16	648704	2	SS3_PROX	SS3_PROX:INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1:ENST00000566609.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	203	2	4.47001	4.644585	4.81916	0.00107349	4.15967e-4	0.0197319	0.00768537
chr18	28139684	28139784	7140271	0	-	0.37	(0.36,0.39]	chr18	726157	421	INTRON	INTRON	CDH2	ENSG00000170558.10	ENST00000269141.8:ENST00000676445.1:ENST00000675708.1:ENST00000430882.6:ENST00000413878.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	42	2	4.09186	4.644494999999999	5.19713	0.0687088	0.0462258	0.193274	0.143138
chr10	113842988	113843075	4761389	0	-	0.356322	(0.33,0.36]	chr10	455366	1	INTRON	INTRON	DCLRE1A	ENSG00000198924.8	ENST00000361384.7:ENST00000369305.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.57958	4.64426	4.70894	0.0798152	0.0288057	0.176933	0.123764
chr4	186282639	186282734	2173823	0	+	0.336842	(0.33,0.36]	chr4	220288	7	INTRON	INTRON	F11	ENSG00000088926.14	ENST00000403665.7:ENST00000264692.8	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.57958	4.64426	4.70894	0.0798152	0.0288057	0.176933	0.123764
chr1	8634077	8634177	393893	0	-	0.48	(0.45,0.485]	chr1	45057	93	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	84	2	3.60494	4.64412	5.6833	0.0195193	0.00682726	0.0955413	0.0525149
chr10	35428420	35428520	4476594	0	+	0.55	(0.523,0.58]	chr10	428113	332	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	100	2	3.22074	4.644105	6.06747	0.0350559	7.30845e-4	0.12704	0.0113963
chr11	70756673	70756773	5061848	0	-	0.61	(0.58,1]	chr11	492701	388	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.62403	4.644095	4.66416	0.0578275	0.0144381	0.154343	0.0833845
chr12	132529383	132529483	5352909	0	+	0.67	(0.58,1]	chr12	523670	10	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.62403	4.644095	4.66416	0.0578275	0.0144381	0.154343	0.0833845
chr16	3534242	3534341	6377811	0	+	0.646465	(0.58,1]	chr16	630564	12	UTR3	UTR3:EXON_MRNA:INTRON	CLUAP1	ENSG00000103351.13	ENST00000576634.6:ENST00000341633.9:ENST00000571025.5:ENST00000572600.5:ENST00000572632.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.62403	4.644095	4.66416	0.0578275	0.0144381	0.154343	0.0833845
chr17	29133393	29133493	6876497	0	-	0.64	(0.58,1]	chr17	698001	2	SS5_PROX	SS5_PROX:INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000590242.5:ENST00000528564.2:ENST00000528322.6:ENST00000585573.6:ENST00000533420.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.62403	4.644095	4.66416	0.0578275	0.0144381	0.154343	0.0833845
chr19	4491935	4492035	7193755	0	+	0.67	(0.58,1]	chr19	732769	1	SS5_PROX	SS5_PROX:INTRON	HDGFL2	ENSG00000167674.15	ENST00000616600.5:ENST00000621835.4:ENST00000589486.5:ENST00000615225.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.62403	4.644095	4.66416	0.0578275	0.0144381	0.154343	0.0833845
chr21	45477227	45477310	7631043	0	+	0.674699	(0.58,1]	chr21	797687	4	SS3_PROX	SS3_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.62403	4.644095	4.66416	0.0578275	0.0144381	0.154343	0.0833845
chr4	1215590	1215690	2179821	0	-	0.62	(0.58,1]	chr4	220918	2	SS5_PROX	SS5_PROX:INTRON	CTBP1	ENSG00000159692.16	ENST00000382952.8:ENST00000290921.10:ENST00000504092.5:ENST00000510739.1:ENST00000511907.1:ENST00000505826.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.62403	4.644095	4.66416	0.0578275	0.0144381	0.154343	0.0833845
chr6	158018295	158018394	3059675	0	+	0.59596	(0.58,1]	chr6	297373	1	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.62403	4.644095	4.66416	0.0578275	0.0144381	0.154343	0.0833845
chr8	628437	628537	3932004	0	-	0.67	(0.58,1]	chr8	376005	8	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.62403	4.644095	4.66416	0.0578275	0.0144381	0.154343	0.0833845
chr8	725463	725563	3932985	0	-	0.66	(0.58,1]	chr8	376060	91	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.62403	4.644095	4.66416	0.0578275	0.0144381	0.154343	0.0833845
chr8	143487946	143488046	4096472	0	-	0.62	(0.58,1]	chr8	389272	26	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6:ENST00000528401.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.62403	4.644095	4.66416	0.0578275	0.0144381	0.154343	0.0833845
chr1	2290298	2290398	5115	0	+	0.6	(0.58,1]	chr1	1052	419	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	156	2	2.8058	4.644075	6.48235	0.00396867	0.00202884	0.0368102	0.0283135
chr15	64989526	64989564	6301674	0	-	0.605263	(0.58,1]	chr15	621088	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SPG21	ENSG00000090487.11	ENST00000204566.7:ENST00000561078.5:ENST00000416889.6:ENST00000558765.5:ENST00000560564.1:ENST00000559677.5:ENST00000558339.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	77	2	3.89258	4.64402	5.39546	0.0168207	0.00229214	0.0884836	0.0253494
chr9	6899526	6899626	4116373	0	+	0.48	(0.45,0.485]	chr9	391891	59	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000438023.5:ENST00000381306.7:ENST00000381309.8:ENST00000543771.5:ENST00000496464.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	113	2	3.12149	4.6435	6.16551	0.00879664	0.00776276	0.0630845	0.0570408
chr4	884238	884314	2178444	0	-	0.605263	(0.58,1]	chr4	220623	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504947.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	102	2	3.36168	4.64348	5.92528	0.0062948	0.00298648	0.0523832	0.0303704
chr10	124936059	124936159	4605607	0	+	0.48	(0.45,0.485]	chr10	440370	184	INTRON	INTRON	ENSG00000249456	ENSG00000249456.1	ENST00000508096.1	lncRNA	lncRNA	lncRNA	lncRNA	2	114	2	2.98329	4.643335	6.30338	0.0108066	0.00692617	0.0705371	0.0553898
chr6	110737133	110737233	3233659	0	-	0.43	(0.419,0.45]	chr6	313452	149	INTRON	INTRON	CDK19	ENSG00000155111.15	ENST00000323817.7:ENST00000368911.8:ENST00000413605.6:ENST00000457688.5:ENST00000463016.1:ENST00000460913.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	88	2	3.4957	4.6432899999999995	5.79088	0.022052	0.0102234	0.101502	0.0678072
chr1	8601304	8601404	393563	0	-	0.41	(0.39,0.419]	chr1	45045	106	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	118	2	2.95348	4.64328	6.33308	0.0127764	0.00825437	0.0773423	0.0609913
chr17	17823117	17823217	6865752	0	-	0.59	(0.58,1]	chr17	695916	2	SS5_PROX	SS5_PROX:INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	79	2	3.30273	4.642975	5.98322	0.0107069	0.00562007	0.0700635	0.0493906
chr14	76200406	76200504	5890870	0	+	0.336735	(0.33,0.36]	chr14	575292	40	INTRON	INTRON	GPATCH2L	ENSG00000089916.18	ENST00000554375.5:ENST00000261530.12:ENST00000312858.9:ENST00000621494.1:ENST00000556675.2:ENST00000556372.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	103	2	3.08067	4.642865	6.20506	0.0461365	7.36479e-4	0.14307	0.0114654
chr1	17683275	17683375	55044	0	+	0.71	(0.58,1]	chr1	5603	183	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.3962	4.642825	4.88945	0.0388928	0.0250928	0.131324	0.114418
chr10	103704204	103704303	4757142	0	-	0.626263	(0.58,1]	chr10	454791	107	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.3962	4.642825	4.88945	0.0388928	0.0250928	0.131324	0.114418
chr13	51776356	51776456	5716050	0	-	0.61	(0.58,1]	chr13	560827	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DHRS12	ENSG00000102796.12	ENST00000444610.8:ENST00000650833.1:ENST00000682342.1:ENST00000218981.5:ENST00000280056.6:ENST00000490949.5:ENST00000489680.5:ENST00000472372.5:ENST00000461948.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.3962	4.642825	4.88945	0.0388928	0.0250928	0.131324	0.114418
chr16	85402530	85402630	6517096	0	+	0.64	(0.58,1]	chr16	646391	432	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.3962	4.642825	4.88945	0.0388928	0.0250928	0.131324	0.114418
chr17	76497561	76497660	6976825	0	-	0.656566	(0.58,1]	chr17	712230	45	INTRON	INTRON	RHBDF2	ENSG00000129667.13	ENST00000675367.1:ENST00000313080.8:ENST00000591885.5:ENST00000674875.1:ENST00000592123.5:ENST00000592378.5:ENST00000585989.5:ENST00000591697.5:ENST00000590288.1:ENST00000591255.5:ENST00000593103.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	37	2	4.3962	4.642825	4.88945	0.0388928	0.0250928	0.131324	0.114418
chr18	58083543	58083643	7071839	0	+	0.62	(0.58,1]	chr18	721100	217	INTRON	INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5:ENST00000588516.5:ENST00000456986.5:ENST00000675502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.3962	4.642825	4.88945	0.0388928	0.0250928	0.131324	0.114418
chr19	4011732	4011831	7192339	0	+	0.646465	(0.58,1]	chr19	732461	36	INTRON	INTRON	PIAS4	ENSG00000105229.7	ENST00000262971.3:ENST00000599999.5:ENST00000600566.5:ENST00000593518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	37	2	4.3962	4.642825	4.88945	0.0388928	0.0250928	0.131324	0.114418
chr19	23322780	23322880	7358011	0	-	0.63	(0.58,1]	chr19	762771	123	INTRON	INTRON	ZNF91	ENSG00000167232.14	ENST00000596528.1:ENST00000596989.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	37	2	4.3962	4.642825	4.88945	0.0388928	0.0250928	0.131324	0.114418
chr2	239349879	239349979	1392209	0	-	0.59	(0.58,1]	chr2	148752	254	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.3962	4.642825	4.88945	0.0388928	0.0250928	0.131324	0.114418
chr21	45473594	45473694	7631002	0	+	0.61	(0.58,1]	chr21	797669	3	SS3_PROX	SS3_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.3962	4.642825	4.88945	0.0388928	0.0250928	0.131324	0.114418
chr22	46614985	46615085	7744325	0	+	0.62	(0.58,1]	chr22	812034	373	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000447351.5:ENST00000431155.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.3962	4.642825	4.88945	0.0388928	0.0250928	0.131324	0.114418
chr3	123072573	123072673	1546161	0	+	0.59	(0.58,1]	chr3	164134	46	INTRON	INTRON	PDIA5	ENSG00000065485.20	ENST00000316218.12:ENST00000489923.5:ENST00000484644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.3962	4.642825	4.88945	0.0388928	0.0250928	0.131324	0.114418
chr7	131109552	131109636	3712862	0	-	0.690476	(0.58,1]	chr7	356817	4	SS5_PROX	SS5_PROX:INTRON	LINC-PINT	ENSG00000231721.7	ENST00000451786.5	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.3962	4.642825	4.88945	0.0388928	0.0250928	0.131324	0.114418
chr7	139701846	139701946	3723164	0	-	0.63	(0.58,1]	chr7	357498	698	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.3962	4.642825	4.88945	0.0388928	0.0250928	0.131324	0.114418
chr19	47230628	47230728	7392388	0	-	0.71	(0.58,1]	chr19	768107	3	SS5_PROX	SS5_PROX:INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	2	192	2	4.08431	4.642615	5.20092	0.00525202	3.84519e-5	0.0476984	0.00135271
chr1	214006366	214006465	339542	0	+	0.424242	(0.419,0.45]	chr1	38103	7	INTRON	INTRON	PROX1	ENSG00000117707.16	ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2	protein_coding	protein_coding	protein_coding	protein_coding	3	143	2	2.95973	4.642475	6.32522	0.00956261	0.00800763	0.0658012	0.0580954
chr1	24446038	24446136	61766	0	+	0.479592	(0.45,0.485]	chr1	6607	4	INTRON	INTRON	NIPAL3	ENSG00000001461.17	ENST00000374399.9:ENST00000003912.7:ENST00000358028.8:ENST00000339255.2	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.22352	4.64245	5.06138	0.0496712	0.0492008	0.160725	0.146142
chr10	79116616	79116715	4532521	0	+	0.474747	(0.45,0.485]	chr10	432420	470	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.22352	4.64245	5.06138	0.0496712	0.0492008	0.160725	0.146142
chr15	62469829	62469929	6123522	0	+	0.47	(0.45,0.485]	chr15	602353	157	INTRON	INTRON	TLN2	ENSG00000171914.17	ENST00000561322.1:ENST00000636159.2:ENST00000561197.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.50852	4.642115	4.77571	0.0719884	0.0302873	0.168159	0.126768
chr19	37683059	37683159	7374547	0	-	0.46	(0.45,0.485]	chr19	764499	39	INTRON	INTRON	ZFP30:ZNF781	ENSG00000120784.17:ENSG00000196381.11	ENST00000587199.5:ENST00000589676.5:ENST00000586732.1:ENST00000358582.9:ENST00000590008.5:ENST00000593040.5:ENST00000585624.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.50852	4.642115	4.77571	0.0719884	0.0302873	0.168159	0.126768
chr20	8493038	8493138	7430198	0	+	0.48	(0.45,0.485]	chr20	773698	1210	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.50852	4.642115	4.77571	0.0719884	0.0302873	0.168159	0.126768
chr2	175786222	175786322	961209	0	+	0.39	(0.36,0.39]	chr2	105443	1913	INTRON	INTRON	ENSG00000289349	ENSG00000289349.1	ENST00000692740.1:ENST00000685522.1	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.56076	4.642035	4.72331	0.103289	0.0236929	0.197541	0.111208
chr3	28277939	28278039	1432611	0	+	0.37	(0.36,0.39]	chr3	152954	142	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2:ENST00000396610.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.56076	4.642035	4.72331	0.103289	0.0236929	0.197541	0.111208
chr3	185778193	185778293	1970892	0	-	0.59	(0.58,1]	chr3	200398	99	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	253	2	4.57352	4.6419999999999995	4.7104799999999996	0.00136852	6.75389e-5	0.0226011	0.00204524
chr6	107435197	107435297	3224594	0	-	0.49	(0.485,0.523]	chr6	312575	1005	INTRON	INTRON	PDSS2	ENSG00000164494.12	ENST00000369037.9:ENST00000369031.4	protein_coding	protein_coding	protein_coding	protein_coding	1	100	2	3.25002	4.64199	6.03396	0.033374	8.35707e-4	0.124113	0.012554
chr13	95296152	95296251	5743632	0	-	0.434343	(0.419,0.45]	chr13	562901	264	INTRON	INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1:ENST00000642524.1:ENST00000645532.1:ENST00000644471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	41	2	4.19215	4.64174	5.09133	0.0617113	0.0586308	0.18013	0.155565
chr3	12961336	12961435	1688742	0	-	0.424242	(0.419,0.45]	chr3	176520	3	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.19215	4.64174	5.09133	0.0617113	0.0586308	0.18013	0.155565
chr19	5818589	5818689	7195572	0	+	0.47	(0.45,0.485]	chr19	733105	128	INTRON	INTRON	NRTN	ENSG00000171119.3	ENST00000303212.3	protein_coding	protein_coding	protein_coding	protein_coding	1	103	2	3.35641	4.64173	5.92705	0.0297105	0.00129636	0.116341	0.0170746
chr13	112971848	112971948	5655339	0	+	0.4	(0.39,0.419]	chr13	555120	20	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	2	119	2	2.86732	4.641525	6.41573	0.01549	0.00718148	0.0871517	0.056408
chr9	14837057	14837157	4280085	0	-	0.58	(0.523,0.58]	chr9	408973	117	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	153	2	2.55489	4.64129	6.72769	0.0124509	0.00275419	0.0765738	0.0332418
chr20	38997858	38997957	7477992	0	+	0.535354	(0.523,0.58]	chr20	778747	26	INTRON	INTRON	DHX35	ENSG00000101452.15	ENST00000373325.6:ENST00000252011.8:ENST00000373323.8:ENST00000652169.1:ENST00000484417.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	86	2	3.18279	4.6411999999999995	6.09961	0.0168396	0.00866655	0.0919482	0.0623824
chr1	55079959	55080059	491286	0	-	0.4	(0.39,0.419]	chr1	58560	3	SS3_PROX	SS3_PROX:INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.55943	4.641095	4.72276	0.104562	0.0238104	0.19835	0.111436
chr1	149543192	149543286	239081	0	+	0.404255	(0.39,0.419]	chr1	26898	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF19	ENSG00000271383.8	ENST00000651566.2:ENST00000611931.4:ENST00000612881.4:ENST00000369227.7	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.55943	4.641095	4.72276	0.104562	0.0238104	0.19835	0.111436
chr16	18552433	18552531	6559429	0	-	0.418367	(0.39,0.419]	chr16	653797	5	INTRON	INTRON	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000381474.7:ENST00000564991.5:ENST00000621364.4:ENST00000622306.5:ENST00000543392.5:ENST00000562312.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.55943	4.641095	4.72276	0.104562	0.0238104	0.19835	0.111436
chr22	36470896	36470995	7807448	0	-	0.40404	(0.39,0.419]	chr22	818178	18	INTRON	INTRON	TXN2	ENSG00000100348.10	ENST00000216185.7:ENST00000416967.1:ENST00000487725.1:ENST00000403313.5:ENST00000411915.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.55943	4.641095	4.72276	0.104562	0.0238104	0.19835	0.111436
chr3	149539915	149540015	1940013	0	-	0.37	(0.36,0.39]	chr3	197467	3	SS5_PROX	SS5_PROX:INTRON	WWTR1	ENSG00000018408.15	ENST00000465804.5:ENST00000360632.8:ENST00000467467.5:ENST00000471586.5:ENST00000494754.1:ENST00000472417.1:ENST00000485244.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	239	2	4.50437	4.64107	4.77777	0.0046437	3.78517e-4	0.0444515	0.00719205
chr17	17736453	17736553	6689400	0	+	0.55	(0.523,0.58]	chr17	671344	119	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	1	82	2	3.62427	4.64088	5.65749	0.0182707	0.0060311	0.0921579	0.0484641
chr1	17679380	17679479	55005	0	+	0.545455	(0.523,0.58]	chr1	5603	144	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.43597	4.64083	4.84569	0.0610722	0.0313935	0.158506	0.127822
chr10	70326321	70326420	4706281	0	-	0.565657	(0.523,0.58]	chr10	448520	19	INTRON	INTRON	LRRC20	ENSG00000172731.15	ENST00000395010.5:ENST00000395011.5:ENST00000373224.5:ENST00000355790.8:ENST00000446961.4:ENST00000357631.6:ENST00000358141.6	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.43597	4.64083	4.84569	0.0610722	0.0313935	0.158506	0.127822
chr10	103691130	103691230	4757007	0	-	0.54	(0.523,0.58]	chr10	454779	131	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.43597	4.64083	4.84569	0.0610722	0.0313935	0.158506	0.127822
chr10	103837216	103837316	4758477	0	-	0.56	(0.523,0.58]	chr10	454819	355	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.43597	4.64083	4.84569	0.0610722	0.0313935	0.158506	0.127822
chr10	113874326	113874425	4591100	0	+	0.555556	(0.523,0.58]	chr10	438820	153	INTRON	INTRON	NHLRC2	ENSG00000196865.4	ENST00000369301.3	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.43597	4.64083	4.84569	0.0610722	0.0313935	0.158506	0.127822
chr10	131953484	131953584	4616562	0	+	0.55	(0.523,0.58]	chr10	441111	53	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5:ENST00000490777.3:ENST00000649083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.43597	4.64083	4.84569	0.0610722	0.0313935	0.158506	0.127822
chr17	17735653	17735753	6689392	0	+	0.53	(0.523,0.58]	chr17	671344	111	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.43597	4.64083	4.84569	0.0610722	0.0313935	0.158506	0.127822
chr7	55539726	55539825	3592309	0	-	0.535354	(0.523,0.58]	chr7	346466	2	INTRON	INTRON	VOPP1	ENSG00000154978.13	ENST00000462326.5:ENST00000285279.10:ENST00000428648.5:ENST00000418904.5:ENST00000454227.5:ENST00000427700.1:ENST00000452832.5:ENST00000453112.5:ENST00000471168.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.43597	4.64083	4.84569	0.0610722	0.0313935	0.158506	0.127822
chr9	100474439	100474539	4200483	0	+	0.55	(0.523,0.58]	chr9	399058	3	INTRON	INTRON	MSANTD3-TMEFF1:TMEFF1	ENSG00000251349.3:ENSG00000241697.5	ENST00000502978.1:ENST00000374879.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.43597	4.64083	4.84569	0.0610722	0.0313935	0.158506	0.127822
chr16	16274743	16274827	6408433	0	+	0.428571	(0.419,0.45]	chr16	633351	3	SS3_PROX	SS3_PROX:INTRON	NOMO3	ENSG00000103226.19	ENST00000676846.1:ENST00000399336.9:ENST00000677912.1:ENST00000677777.1:ENST00000678192.1:ENST00000678393.1:ENST00000678538.1:ENST00000679086.1:ENST00000574894.2:ENST00000678080.1:ENST00000677260.1:ENST00000676550.1:ENST00000263012.10:ENST00000575225.5:ENST00000677781.1:ENST00000677163.1:ENST00000678148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.29342	4.6405449999999995	4.98767	0.0669167	0.0526662	0.167062	0.16272
chr19	2205245	2205343	7188911	0	+	0.44898	(0.419,0.45]	chr19	731581	21	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.29342	4.6405449999999995	4.98767	0.0669167	0.0526662	0.167062	0.16272
chr11	70524830	70524930	5059521	0	-	0.56	(0.523,0.58]	chr11	492663	215	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	83	2	3.4003	4.64051	5.88072	0.0126258	0.0103016	0.0761905	0.0678983
chr11	74804187	74804287	4895178	0	+	0.54	(0.523,0.58]	chr11	472472	141	INTRON	INTRON	RNF169	ENSG00000166439.6	ENST00000299563.5	protein_coding	protein_coding	protein_coding	protein_coding	1	82	2	3.58927	4.64042	5.69157	0.0172851	0.00656975	0.0897247	0.0510026
chr7	47476706	47476806	3588575	0	-	0.5	(0.485,0.523]	chr7	346123	236	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	83	2	3.4289	4.6401	5.8513	0.0131886	0.00977282	0.0785398	0.0664239
chr11	64307067	64307167	4868825	0	+	0.64	(0.58,1]	chr11	467351	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ESRRA	ENSG00000173153.17	ENST00000406310.6:ENST00000000442.11:ENST00000677967.1:ENST00000539594.5:ENST00000405666.5:ENST00000468670.2	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	3.37954	4.640045	5.90055	0.0207688	6.1741e-4	0.098873	0.0101143
chr12	121219841	121219939	5341267	0	+	0.377551	(0.36,0.39]	chr12	521600	22	INTRON	INTRON	P2RX4	ENSG00000135124.16	ENST00000359949.11:ENST00000543430.5:ENST00000337233.9:ENST00000543984.5:ENST00000499638.6:ENST00000543318.5:ENST00000540930.5:ENST00000538701.5:ENST00000542067.5:ENST00000541187.5:ENST00000538417.2:ENST00000314442.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.6317	4.64002	4.64834	0.0950937	0.0272056	0.189021	0.119337
chr19	12176955	12177055	7211287	0	+	0.38	(0.36,0.39]	chr19	736105	72	INTRON	INTRON	ZNF136	ENSG00000196646.12	ENST00000439995.5:ENST00000425827.5:ENST00000652580.1:ENST00000343979.6:ENST00000418338.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.6317	4.64002	4.64834	0.0950937	0.0272056	0.189021	0.119337
chr2	231043995	231044095	1047564	0	+	0.39	(0.36,0.39]	chr2	114051	22	INTRON	INTRON	C2orf72	ENSG00000204128.6	ENST00000373640.5:ENST00000477463.1:ENST00000463834.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.6317	4.64002	4.64834	0.0950937	0.0272056	0.189021	0.119337
chr3	188270050	188270150	1652959	0	+	0.38	(0.36,0.39]	chr3	173754	295	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.6317	4.64002	4.64834	0.0950937	0.0272056	0.189021	0.119337
chrX	123864323	123864423	7946323	0	+	0.37	(0.36,0.39]	chrX	831426	34	INTRON	INTRON	XIAP	ENSG00000101966.13	ENST00000422098.5:ENST00000481776.5:ENST00000434753.7:ENST00000497906.5:ENST00000468691.5:ENST00000430625.1:ENST00000371199.8:ENST00000497640.1:ENST00000355640.3:ENST00000468503.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.6317	4.64002	4.64834	0.0950937	0.0272056	0.189021	0.119337
chr11	68531634	68531733	4884194	0	+	0.393939	(0.39,0.419]	chr11	470720	86	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5:ENST00000527403.6:ENST00000525050.5:ENST00000527069.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.39622	4.639939999999999	4.88366	0.0707789	0.042449	0.168159	0.149195
chrX	44899585	44899685	7871937	0	+	0.41	(0.39,0.419]	chrX	825082	252	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.39622	4.639939999999999	4.88366	0.0707789	0.042449	0.168159	0.149195
chr20	8494138	8494238	7430209	0	+	0.32	(0.29,0.33]	chr20	773698	1221	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	99	2	3.05307	4.639535	6.226	0.0438985	5.29368e-4	0.139792	0.0090868
chr14	53238274	53238373	5812391	0	+	0.484848	(0.45,0.485]	chr14	568811	199	INTRON	INTRON	ENSG00000237356	ENSG00000237356.7	ENST00000654605.1:ENST00000653185.1:ENST00000663291.1:ENST00000666968.1:ENST00000656426.1:ENST00000454942.5:ENST00000666730.1:ENST00000659459.1:ENST00000667619.1:ENST00000663444.1:ENST00000456100.6:ENST00000435322.1:ENST00000661514.1:ENST00000665016.1:ENST00000668539.1:ENST00000668546.1:ENST00000663120.1:ENST00000655713.1:ENST00000653852.1:ENST00000648066.1	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.32491	4.639355	4.9538	0.0569772	0.0418883	0.154343	0.149021
chr7	75712069	75712169	3608224	0	-	0.47	(0.45,0.485]	chr7	348444	570	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6:ENST00000485723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.32491	4.639355	4.9538	0.0569772	0.0418883	0.154343	0.149021
chr15	73708617	73708689	6150729	0	+	0.5	(0.485,0.523]	chr15	604958	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	CD276	ENSG00000103855.18	ENST00000537340.6:ENST00000318424.9:ENST00000318443.10:ENST00000561213.5:ENST00000560928.5:ENST00000564751.5:ENST00000561176.5:ENST00000557951.1:ENST00000559073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.43249	4.6393	4.84611	0.0608067	0.0322299	0.158506	0.12988
chr16	81529885	81529985	6508592	0	+	0.49	(0.485,0.523]	chr16	645911	340	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.43249	4.6393	4.84611	0.0608067	0.0322299	0.158506	0.12988
chr2	3290411	3290510	1081011	0	-	0.494949	(0.485,0.523]	chr2	117633	77	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.43249	4.6393	4.84611	0.0608067	0.0322299	0.158506	0.12988
chr2	27081152	27081252	734079	0	+	0.52	(0.485,0.523]	chr2	85642	2	SS5_PROX	SS5_PROX:INTRON	EMILIN1	ENSG00000138080.14	ENST00000380320.9	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.43249	4.6393	4.84611	0.0608067	0.0322299	0.158506	0.12988
chr22	46776129	46776228	7745140	0	+	0.50505	(0.485,0.523]	chr22	812164	15	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000441936.5:ENST00000486163.5:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000496139.5:ENST00000472791.5:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.43249	4.6393	4.84611	0.0608067	0.0322299	0.158506	0.12988
chr7	143384345	143384445	3510748	0	+	0.5	(0.485,0.523]	chr7	338485	1	SS5_PROX	SS5_PROX:INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.43249	4.6393	4.84611	0.0608067	0.0322299	0.158506	0.12988
chr9	127548959	127549059	4411993	0	-	0.52	(0.485,0.523]	chr9	420485	168	INTRON	INTRON	NIBAN2	ENSG00000136830.12	ENST00000373314.7:ENST00000373312.4:ENST00000478917.1:ENST00000468379.1:ENST00000484348.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.43249	4.6393	4.84611	0.0608067	0.0322299	0.158506	0.12988
chrX	133542787	133542887	8111582	0	-	0.51	(0.485,0.523]	chrX	845474	61	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000692074.1:ENST00000667662.1:ENST00000666017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.43249	4.6393	4.84611	0.0608067	0.0322299	0.158506	0.12988
chr11	73120933	73121033	5073766	0	-	0.41	(0.39,0.419]	chr11	493659	368	INTRON	INTRON	FCHSD2	ENSG00000137478.15	ENST00000409418.9:ENST00000311172.11:ENST00000409314.5:ENST00000458644.6:ENST00000409853.5:ENST00000422375.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.63037	4.63908	4.64779	0.0963077	0.0273358	0.189169	0.119337
chr12	113884283	113884383	5509714	0	-	0.4	(0.39,0.419]	chr12	542470	250	INTRON	INTRON	RBM19	ENSG00000122965.11	ENST00000545145.6:ENST00000392561.7:ENST00000261741.10	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.63037	4.63908	4.64779	0.0963077	0.0273358	0.189169	0.119337
chr12	118300560	118300660	5517981	0	-	0.4	(0.39,0.419]	chr12	543278	30	INTRON	INTRON	TAOK3	ENSG00000135090.14	ENST00000392533.8:ENST00000419821.6:ENST00000541186.5:ENST00000541878.5:ENST00000542902.5:ENST00000542532.5:ENST00000541786.5:ENST00000539872.5:ENST00000542692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.63037	4.63908	4.64779	0.0963077	0.0273358	0.189169	0.119337
chr5	1328992	1329090	2609105	0	-	0.642857	(0.58,1]	chr5	259719	27	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	78	2	4.01623	4.638805	5.26138	0.021217	0.00161478	0.0996078	0.0199131
chr22	50682256	50682353	7754992	0	+	0.525773	(0.523,0.58]	chr22	812716	25	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	100	2	3.01567	4.6384	6.26113	0.0482042	4.27166e-4	0.144601	0.00779962
chr11	70574929	70575029	5060022	0	-	0.62	(0.58,1]	chr11	492663	716	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	194	2	4.60513	4.638345	4.67156	0.0017275	2.20504e-4	0.0257605	0.00485102
chr7	105086252	105086351	3442827	0	+	0.464646	(0.45,0.485]	chr7	333224	41	INTRON	INTRON	KMT2E	ENSG00000005483.22	ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000476671.5:ENST00000667857.1:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	41	2	4.11446	4.637975	5.16149	0.0592571	0.0427653	0.176157	0.13762
chrX	101124139	101124238	7924479	0	+	0.464646	(0.45,0.485]	chrX	829351	30	INTRON	INTRON	CENPI	ENSG00000102384.14	ENST00000684367.1:ENST00000423383.3:ENST00000682095.1:ENST00000372927.5:ENST00000372926.5	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.11446	4.637975	5.16149	0.0592571	0.0427653	0.176157	0.13762
chr3	140950927	140951027	1585861	0	+	0.46	(0.45,0.485]	chr3	167506	78	INTRON	INTRON	SLC25A36	ENSG00000114120.14	ENST00000446041.6:ENST00000324194.12:ENST00000648615.1:ENST00000502756.1:ENST00000393015.8:ENST00000515813.1:ENST00000507429.5:ENST00000502594.5:ENST00000453248.6:ENST00000631654.1:ENST00000513887.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	84	2	3.73402	4.63794	5.54186	0.0243502	0.0049945	0.106588	0.0428203
chr9	134341730	134341829	4260840	0	+	0.585859	(0.58,1]	chr9	406311	147	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	98	2	3.8171	4.63791	5.45872	0.0090206	0.00211999	0.0637469	0.0239744
chr13	26254769	26254869	5551194	0	+	0.78	(0.58,1]	chr13	547914	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CDK8	ENSG00000132964.12	ENST00000536792.5:ENST00000381527.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	78	2	3.35051	4.637895	5.92528	0.00953058	0.0062948	0.0650078	0.0523832
chr17	77376498	77376598	6804129	0	+	0.64	(0.58,1]	chr17	686756	1	SS5_PROX	SS5_PROX:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1:ENST00000423034.6:ENST00000590059.5:ENST00000587514.1:ENST00000590586.1:ENST00000592407.1:ENST00000427674.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	78	2	3.35051	4.637895	5.92528	0.00953058	0.0062948	0.0650078	0.0523832
chr10	34685262	34685361	4670509	0	-	0.343434	(0.33,0.36]	chr10	445537	57	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	3.89271	4.6377749999999995	5.38284	0.0317908	0.00362349	0.121384	0.0343232
chr1	17682776	17682876	55039	0	+	0.62	(0.58,1]	chr1	5603	178	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.58025	4.637675	4.6951	0.0521567	0.0172566	0.148503	0.0923809
chr18	74514973	74515067	7088613	0	+	0.648936	(0.58,1]	chr18	722320	9	INTRON	INTRON	CNDP2	ENSG00000133313.15	ENST00000579847.5:ENST00000324262.9:ENST00000324301.12:ENST00000584581.5:ENST00000579624.1:ENST00000583695.1:ENST00000581600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.58025	4.637675	4.6951	0.0521567	0.0172566	0.148503	0.0923809
chr19	1162611	1162711	7305678	0	-	0.59	(0.58,1]	chr19	753054	76	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5:ENST00000587655.2	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.58025	4.637675	4.6951	0.0521567	0.0172566	0.148503	0.0923809
chr21	43904718	43904817	7624826	0	+	0.656566	(0.58,1]	chr21	796895	3	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.58025	4.637675	4.6951	0.0521567	0.0172566	0.148503	0.0923809
chr9	133913665	133913765	4429537	0	-	0.65	(0.58,1]	chr9	423310	519	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.58025	4.637675	4.6951	0.0521567	0.0172566	0.148503	0.0923809
chr20	8462945	8463045	7429897	0	+	0.29	[0,0.29]	chr20	773698	909	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	94	2	2.99728	4.637305	6.27733	0.0416889	3.30957e-4	0.13639	0.00650092
chr10	42593904	42594003	4674955	0	-	0.414141	(0.39,0.419]	chr10	445874	13	CDS	CDS:EXON_MRNA:INTRON	ZNF33B	ENSG00000196693.15	ENST00000462075.1:ENST00000486187.5:ENST00000465206.5:ENST00000613419.4:ENST00000359467.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	92	2	4.07846	4.637124999999999	5.19579	0.0469937	0.00244164	0.143232	0.0263656
chr3	65419836	65419936	1809648	0	-	0.49	(0.485,0.523]	chr3	187193	180	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	3.12385	4.636895	6.14994	0.0193526	0.00788098	0.0994526	0.059464500000000003
chr17	80223737	80223837	6806856	0	+	0.21	[0,0.29]	chr17	687274	4	SS5_PROX	SS5_PROX:INTRON	SLC26A11	ENSG00000181045.15	ENST00000361193.8:ENST00000546047.6:ENST00000411502.7:ENST00000571888.5:ENST00000576126.5:ENST00000572725.5:ENST00000571564.5:ENST00000571176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	37	2	4.45163	4.6362950000000005	4.82096	0.0456837	0.0278965	0.142336	0.12105
chr10	48041530	48041630	4680781	0	-	0.44	(0.419,0.45]	chr10	446508	21	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	1	96	2	4.1811	4.636215	5.09133	0.0586308	0.00199987	0.155565	0.0230381
chr16	1727846	1727945	6371214	0	+	0.515152	(0.485,0.523]	chr16	628837	28	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000685565.1:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	83	2	3.83677	4.63565	5.43453	0.0258944	0.00360381	0.109555	0.0342681
chr1	186375974	186376074	308118	0	+	0.45	(0.419,0.45]	chr1	34763	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ODR4	ENSG00000157181.16	ENST00000367470.8:ENST00000287859.11:ENST00000419367.8	protein_coding	protein_coding	protein_coding	protein_coding	0	42	2	4.08324	4.63564	5.18804	0.0727147	0.051668	0.199502	0.148503
chr8	38778182	38778282	3802337	0	+	0.42	(0.419,0.45]	chr8	365828	204	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	42	2	4.08324	4.63564	5.18804	0.0727147	0.051668	0.199502	0.148503
chr21	42847443	42847542	7675446	0	-	0.606061	(0.58,1]	chr21	802287	38	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	2	115	2	4.00946	4.63542	5.26138	0.021217	4.2872e-4	0.0996078	0.00782374
chr17	14127912	14128012	6681732	0	+	0.43	(0.419,0.45]	chr17	670678	253	INTRON	INTRON	COX10	ENSG00000006695.12	ENST00000664217.1:ENST00000670279.1:ENST00000261643.8:ENST00000580561.1:ENST00000581931.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	107	2	3.11154	4.6351700000000005	6.1588	0.0490796	0.00107628	0.146142	0.0148869
chr2	3288215	3288315	1080989	0	-	0.52	(0.485,0.523]	chr2	117633	55	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	82	2	3.6472	4.6351	5.623	0.0192139	0.00579534	0.095424900000000007	0.0472203
chr11	96250394	96250494	5112640	0	-	0.34	(0.33,0.36]	chr11	496566	1565	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.211	4.6350999999999996	5.0592	0.0541541	0.0504445	0.167824	0.148216
chr15	51970987	51971087	6261338	0	-	0.42	(0.419,0.45]	chr15	617018	41	INTRON	INTRON	LEO1	ENSG00000166477.13	ENST00000299601.10:ENST00000315141.5	protein_coding	protein_coding	protein_coding	protein_coding	1	109	2	3.37525	4.634845	5.89444	0.0333115	0.00206691	0.123922	0.0235758
chr2	168743231	168743331	947056	0	+	0.36	(0.33,0.36]	chr2	104005	249	INTRON	INTRON	CERS6	ENSG00000172292.15	ENST00000392687.4:ENST00000305747.11	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.49588	4.634715	4.77355	0.0735809	0.033477	0.17026	0.133139
chr3	58335322	58335421	1485571	0	+	0.343434	(0.33,0.36]	chr3	159950	13	INTRON	INTRON	PXK	ENSG00000168297.16	ENST00000302779.9:ENST00000468776.5:ENST00000383716.7:ENST00000356151.7:ENST00000463280.5:ENST00000383715.8:ENST00000484288.5:ENST00000479241.5:ENST00000477308.5:ENST00000491164.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.49588	4.634715	4.77355	0.0735809	0.033477	0.17026	0.133139
chr17	4839633	4839733	6671949	0	+	0.45	(0.419,0.45]	chr17	668609	56	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	107	2	3.13761	4.63466	6.13171	0.0472779	0.00115219	0.143504	0.0157112
chr1	40374323	40374404	100232	0	+	0.567901	(0.523,0.58]	chr1	11923	1	SS5_PROX	SS5_PROX:INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.50593	4.634415000000001	4.7629	0.094303	0.0167014	0.188571	0.0917029
chr1	243480147	243480247	370436	0	+	0.54	(0.523,0.58]	chr1	41881	39	INTRON	INTRON	SDCCAG8	ENSG00000054282.16	ENST00000366541.8:ENST00000435549.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.50593	4.634415000000001	4.7629	0.094303	0.0167014	0.188571	0.0917029
chr19	310000	310096	7302973	0	-	0.5625	(0.523,0.58]	chr19	752391	7	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.50593	4.634415000000001	4.7629	0.094303	0.0167014	0.188571	0.0917029
chr22	28885164	28885264	7705292	0	+	0.57	(0.523,0.58]	chr22	806317	7	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.50593	4.634415000000001	4.7629	0.094303	0.0167014	0.188571	0.0917029
chr3	127630286	127630386	1559974	0	+	0.54	(0.523,0.58]	chr3	165171	6	INTRON	INTRON	PODXL2	ENSG00000114631.11	ENST00000342480.7	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.50593	4.634415000000001	4.7629	0.094303	0.0167014	0.188571	0.0917029
chr7	208697	208797	3305741	0	+	0.53	(0.523,0.58]	chr7	320156	4	SS3_PROX	SS3_PROX:INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6:ENST00000477004.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.50593	4.634415000000001	4.7629	0.094303	0.0167014	0.188571	0.0917029
chr10	73707557	73707656	4716781	0	-	0.484848	(0.45,0.485]	chr10	449734	21	INTRON	INTRON	BMS1P4:ENSG00000272140	ENSG00000271816.1:ENSG00000272140.2	ENST00000580790.1:ENST00000415917.2:ENST00000580623.1	lncRNA	lncRNA	lncRNA	lncRNA	1	84	2	3.76457	4.634395	5.50422	0.0257993	0.00463252	0.109555	0.0408278
chr11	74146627	74146727	5078430	0	-	0.38	(0.36,0.39]	chr11	494106	64	INTRON	INTRON	C2CD3	ENSG00000168014.18	ENST00000334126.12:ENST00000442398.7:ENST00000680231.1:ENST00000680839.1:ENST00000681609.1:ENST00000681291.1:ENST00000681924.1:ENST00000680665.1:ENST00000681385.1:ENST00000681811.1:ENST00000681143.1:ENST00000679415.1:ENST00000679906.1:ENST00000681829.1:ENST00000681310.1:ENST00000313663.11:ENST00000414160.7:ENST00000538361.2:ENST00000680306.1:ENST00000681000.1:ENST00000415191.6:ENST00000680718.1:ENST00000539061.6:ENST00000680645.1:ENST00000680173.1:ENST00000681345.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.56926	4.63429	4.69932	0.0877431	0.031369	0.183437	0.127822
chr3	170115855	170115951	1953867	0	-	0.375	(0.36,0.39]	chr3	198659	20	INTRON	INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.56926	4.63429	4.69932	0.0877431	0.031369	0.183437	0.127822
chr7	77553271	77553371	3399411	0	+	0.38	(0.36,0.39]	chr7	328377	71	INTRON	INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000460731.5:ENST00000523952.5:ENST00000433369.6:ENST00000415482.6:ENST00000435495.6:ENST00000418110.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.56926	4.63429	4.69932	0.0877431	0.031369	0.183437	0.127822
chr1	201397896	201397993	642200	0	-	0.536082	(0.523,0.58]	chr1	75864	7	INTRON	INTRON	LAD1	ENSG00000159166.15	ENST00000391967.7:ENST00000367313.4:ENST00000631576.1:ENST00000633953.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.58058	4.634215	4.68785	0.0860403	0.0194172	0.181766	0.0994526
chr11	70720501	70720601	5061486	0	-	0.58	(0.523,0.58]	chr11	492701	26	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.58058	4.634215	4.68785	0.0860403	0.0194172	0.181766	0.0994526
chr13	110541673	110541773	5750391	0	-	0.55	(0.523,0.58]	chr13	563637	171	INTRON	INTRON	RAB20	ENSG00000139832.5	ENST00000267328.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.58058	4.634215	4.68785	0.0860403	0.0194172	0.181766	0.0994526
chr17	15469814	15469914	6860133	0	-	0.53	(0.523,0.58]	chr17	695071	23	INTRON	INTRON	TVP23C-CDRT4:CDRT4	ENSG00000259024.6:ENSG00000239704.11	ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.58058	4.634215	4.68785	0.0860403	0.0194172	0.181766	0.0994526
chr17	17698242	17698342	6689017	0	+	0.57	(0.523,0.58]	chr17	671338	133	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.58058	4.634215	4.68785	0.0860403	0.0194172	0.181766	0.0994526
chr18	74601131	74601230	7089282	0	+	0.535354	(0.523,0.58]	chr18	722412	28	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000582337.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.58058	4.634215	4.68785	0.0860403	0.0194172	0.181766	0.0994526
chr3	13031191	13031291	1689448	0	-	0.54	(0.523,0.58]	chr3	176542	87	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.58058	4.634215	4.68785	0.0860403	0.0194172	0.181766	0.0994526
chr9	109377475	109377574	4366507	0	-	0.535354	(0.523,0.58]	chr9	417018	19	UTR3	UTR3:EXON_MRNA:INTRON	PTPN3	ENSG00000070159.14	ENST00000447271.1:ENST00000262539.7:ENST00000412145.5:ENST00000446349.5:ENST00000374541.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.58058	4.634215	4.68785	0.0860403	0.0194172	0.181766	0.0994526
chr9	129619715	129619814	4251028	0	+	0.555556	(0.523,0.58]	chr9	404743	102	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.58058	4.634215	4.68785	0.0860403	0.0194172	0.181766	0.0994526
chr9	133858379	133858479	4428982	0	-	0.55	(0.523,0.58]	chr9	423304	237	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.58058	4.634215	4.68785	0.0860403	0.0194172	0.181766	0.0994526
chr15	25018362	25018460	6064037	0	+	0.387755	(0.36,0.39]	chr15	595414	33	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	7	718	2	4.43196	4.63408	4.8362	0.00159002	2.75622e-5	0.024604	0.00106056
chr4	40991910	40992010	2223176	0	-	0.51	(0.485,0.523]	chr4	224407	465	INTRON	INTRON	APBB2	ENSG00000163697.17	ENST00000295974.12:ENST00000508593.6:ENST00000513140.5:ENST00000513611.5:ENST00000506352.5:ENST00000509475.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	85	2	4.00429	4.63402	5.26375	0.0335928	0.00233191	0.124319	0.0257012
chr11	70585329	70585429	5060126	0	-	0.59	(0.58,1]	chr11	492663	820	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	81	2	3.1491	4.633875	6.11865	0.0154006	0.00429384	0.0869771	0.042386
chr10	49955260	49955360	4486709	0	+	0.3	(0.29,0.33]	chr10	429090	2	SS5_PROX	SS5_PROX:INTRON	TIMM23B	ENSG00000204152.14	ENST00000478381.5:ENST00000651259.3:ENST00000652716.1:ENST00000483296.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.51301	4.633565000000001	4.75412	0.0885563	0.0180435	0.183874	0.0952934
chr12	31535431	31535531	5407640	0	-	0.45	(0.419,0.45]	chr12	529605	292	INTRON	INTRON	DENND5B	ENSG00000170456.16	ENST00000389082.10:ENST00000536562.5:ENST00000354285.8:ENST00000545147.5:ENST00000544698.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	90	2	3.1968	4.6334100000000005	6.07002	0.0193853	0.0143746	0.0994526	0.0821732
chr1	42810065	42810163	456895	0	-	0.316327	(0.29,0.33]	chr1	54894	22	INTRON	INTRON	SVBP	ENSG00000177868.12	ENST00000372521.9:ENST00000372522.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.58769	4.6333850000000005	4.67908	0.0806047	0.0209202	0.177452	0.102931
chr13	100321580	100321680	5645323	0	+	0.33	(0.29,0.33]	chr13	554093	113	INTRON	INTRON	PCCA	ENSG00000175198.17	ENST00000376286.8:ENST00000376279.7:ENST00000376285.6:ENST00000647303.1:ENST00000637657.1:ENST00000636366.1:ENST00000636475.1:ENST00000636420.1:ENST00000424527.5:ENST00000443601.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.58769	4.6333850000000005	4.67908	0.0806047	0.0209202	0.177452	0.102931
chr6	140785833	140785933	3279589	0	-	0.33	(0.29,0.33]	chr6	317145	1220	INTRON	INTRON	ENSG00000234147	ENSG00000234147.3	ENST00000650553.2	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.58769	4.6333850000000005	4.67908	0.0806047	0.0209202	0.177452	0.102931
chrX	9479820	9479920	7842592	0	+	0.33	(0.29,0.33]	chrX	822398	140	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.58769	4.6333850000000005	4.67908	0.0806047	0.0209202	0.177452	0.102931
chr5	10693071	10693171	2611967	0	-	0.49	(0.485,0.523]	chr5	260254	91	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	101	2	3.4264	4.6332699999999996	5.84014	0.025039	0.00139792	0.10758	0.0179863
chr10	132757172	132757272	4619044	0	+	0.49	(0.485,0.523]	chr10	441201	33	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.50634	4.632865	4.75939	0.0939553	0.0172254	0.188571	0.0923809
chr12	121718857	121718957	5341981	0	+	0.52	(0.485,0.523]	chr12	521724	55	INTRON	INTRON	TMEM120B	ENSG00000188735.13	ENST00000449592.7:ENST00000342607.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.50634	4.632865	4.75939	0.0939553	0.0172254	0.188571	0.0923809
chr17	15463066	15463166	6860065	0	-	0.52	(0.485,0.523]	chr17	695067	96	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.50634	4.632865	4.75939	0.0939553	0.0172254	0.188571	0.0923809
chr19	14715003	14715097	7215075	0	+	0.5	(0.485,0.523]	chr19	737064	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ZNF333	ENSG00000160961.12	ENST00000292530.11:ENST00000597007.5:ENST00000540689.6:ENST00000597301.5:ENST00000598161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.50634	4.632865	4.75939	0.0939553	0.0172254	0.188571	0.0923809
chr20	48934402	48934502	7490279	0	+	0.5	(0.485,0.523]	chr20	780774	120	INTRON	INTRON	ARFGEF2	ENSG00000124198.10	ENST00000371917.5:ENST00000681399.1:ENST00000679436.1:ENST00000681885.1:ENST00000681021.1:ENST00000680871.1:ENST00000681656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.50634	4.632865	4.75939	0.0939553	0.0172254	0.188571	0.0923809
chr21	31968984	31969083	7608040	0	+	0.494949	(0.485,0.523]	chr21	794564	2	INTRON	INTRON	HUNK	ENSG00000142149.9	ENST00000270112.7	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.50634	4.632865	4.75939	0.0939553	0.0172254	0.188571	0.0923809
chr16	89407655	89407755	6660906	0	-	0.5	(0.485,0.523]	chr16	666734	35	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1:ENST00000562211.2:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	404	2	4.37511	4.63284	4.89057	0.00167868	6.97864e-5	0.0253818	0.00209929
chr16	8835333	8835433	6382747	0	+	0.51	(0.485,0.523]	chr16	631333	62	INTRON	INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000683435.1:ENST00000683094.1:ENST00000566604.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000567697.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.581	4.63267	4.68434	0.085711	0.0200045	0.181766	0.100864
chr16	75095597	75095673	6492881	0	+	0.513158	(0.485,0.523]	chr16	645362	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1:ENST00000579084.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.581	4.63267	4.68434	0.085711	0.0200045	0.181766	0.100864
chr17	77455704	77455798	6804934	0	+	0.489362	(0.485,0.523]	chr17	686802	9	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.581	4.63267	4.68434	0.085711	0.0200045	0.181766	0.100864
chr2	241303322	241303422	1396926	0	-	0.51	(0.485,0.523]	chr2	149481	7	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000310931.10:ENST00000391976.6:ENST00000428482.5:ENST00000441124.5:ENST00000413241.5:ENST00000423693.5:ENST00000425989.5:ENST00000420451.5:ENST00000417540.5:ENST00000462130.1:ENST00000496569.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.581	4.63267	4.68434	0.085711	0.0200045	0.181766	0.100864
chr3	142375944	142375991	1933751	0	-	0.489362	(0.485,0.523]	chr3	196510	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XRN1	ENSG00000114127.11	ENST00000264951.8:ENST00000392981.7:ENST00000498077.6:ENST00000472625.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.581	4.63267	4.68434	0.085711	0.0200045	0.181766	0.100864
chr8	51829252	51829352	3974098	0	-	0.49	(0.485,0.523]	chr8	380236	15	INTRON	INTRON	PCMTD1	ENSG00000168300.14	ENST00000544451.2:ENST00000360540.9:ENST00000522514.6:ENST00000519559.1:ENST00000519554.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.581	4.63267	4.68434	0.085711	0.0200045	0.181766	0.100864
chr8	130427901	130428001	4083481	0	-	0.5	(0.485,0.523]	chr8	388192	2	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000524299.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.581	4.63267	4.68434	0.085711	0.0200045	0.181766	0.100864
chr9	88424990	88425089	4178032	0	+	0.50505	(0.485,0.523]	chr9	397333	57	INTRON	INTRON	SPIN1	ENSG00000106723.17	ENST00000485804.5:ENST00000469017.6:ENST00000375859.4:ENST00000462844.5:ENST00000485565.6:ENST00000483785.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.581	4.63267	4.68434	0.085711	0.0200045	0.181766	0.100864
chr7	103820855	103820955	3662003	0	-	0.33	(0.29,0.33]	chr7	353496	439	INTRON	INTRON	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1:ENST00000681401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	84	2	3.90593	4.6322	5.35847	0.0269557	0.00310829	0.112113	0.0311915
chr16	69071793	69071893	6481118	0	+	0.45	(0.419,0.45]	chr16	643682	310	INTRON	INTRON	TANGO6	ENSG00000103047.8	ENST00000261778.2:ENST00000562000.5:ENST00000568361.5:ENST00000561931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	39	2	4.38804	4.63201	4.87598	0.0768574	0.0451818	0.174882	0.154539
chr18	35015639	35015739	7044681	0	+	0.42	(0.419,0.45]	chr18	719355	97	INTRON	INTRON	MAPRE2	ENSG00000166974.13	ENST00000413393.5:ENST00000591734.5:ENST00000589180.5:ENST00000587359.5:ENST00000436190.6:ENST00000588349.6	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.38804	4.63201	4.87598	0.0768574	0.0451818	0.174882	0.154539
chr6	26365552	26365652	2887031	0	+	0.45	(0.419,0.45]	chr6	280810	2	SS5_PROX	SS5_PROX:INTRON	BTN3A2	ENSG00000186470.14	ENST00000396934.7:ENST00000508906.6:ENST00000532865.5:ENST00000527417.5:ENST00000530653.5:ENST00000377708.7:ENST00000524682.5:ENST00000528222.1:ENST00000532627.5:ENST00000524459.5:ENST00000356386.6:ENST00000527422.5:ENST00000528541.1:ENST00000396948.5:ENST00000532994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.38804	4.63201	4.87598	0.0768574	0.0451818	0.174882	0.154539
chr7	137925657	137925756	3719957	0	-	0.424242	(0.419,0.45]	chr7	357295	25	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5:ENST00000458726.5:ENST00000420629.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.38804	4.63201	4.87598	0.0768574	0.0451818	0.174882	0.154539
chr16	81547181	81547281	6508765	0	+	0.54	(0.523,0.58]	chr16	645911	513	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	105	2	3.64376	4.63176	5.61976	0.0173955	0.00236826	0.0901374	0.0259199
chr9	96610103	96610203	4345540	0	-	0.36	(0.33,0.36]	chr9	415195	430	INTRON	INTRON	CDC14B	ENSG00000081377.17	ENST00000474602.5:ENST00000412285.6:ENST00000375241.6:ENST00000375240.7:ENST00000463569.5:ENST00000415608.1:ENST00000496750.5:ENST00000463547.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	141	2	2.88453	4.631595	6.37866	0.0329759	4.63001e-4	0.122904	0.00825119
chr2	3458312	3458386	711015	0	+	0.648649	(0.58,1]	chr2	83173	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000479955.5:ENST00000497597.5:ENST00000473348.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	101	2	3.30794	4.63124	5.95454	0.0059453	0.00347194	0.0506158	0.0336158
chr11	75305555	75305655	5079161	0	-	0.44	(0.419,0.45]	chr11	494228	20	INTRON	INTRON	ARRB1	ENSG00000137486.17	ENST00000420843.7:ENST00000360025.7:ENST00000532525.1:ENST00000524400.5:ENST00000533609.5:ENST00000533255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.62273	4.63114	4.63955	0.103601	0.0293406	0.197541	0.125102
chr2	236000109	236000209	1067617	0	+	0.44	(0.419,0.45]	chr2	115748	311	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5:ENST00000418654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.62273	4.63114	4.63955	0.103601	0.0293406	0.197541	0.125102
chr3	13201425	13201525	1691156	0	-	0.42	(0.419,0.45]	chr3	176566	369	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.62273	4.63114	4.63955	0.103601	0.0293406	0.197541	0.125102
chr4	183707240	183707340	2170285	0	+	0.42	(0.419,0.45]	chr4	219814	3	SS5_PROX	SS5_PROX:INTRON	TRAPPC11	ENSG00000168538.16	ENST00000357207.8:ENST00000334690.11:ENST00000505676.5:ENST00000512476.1:ENST00000511955.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.62273	4.63114	4.63955	0.103601	0.0293406	0.197541	0.125102
chrX	66636896	66636996	8055665	0	-	0.42	(0.419,0.45]	chrX	840852	205	INTRON	INTRON	EDA2R	ENSG00000131080.15	ENST00000374719.8:ENST00000451436.6	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.62273	4.63114	4.63955	0.103601	0.0293406	0.197541	0.125102
chr22	28927680	28927780	7705718	0	+	0.41	(0.39,0.419]	chr22	806321	98	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7:ENST00000402174.5	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	3.55811	4.630660000000001	5.70321	0.0226065	0.00853617	0.102982	0.0610387
chr22	36013644	36013744	7805678	0	-	0.36	(0.33,0.36]	chr22	817798	521	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1	protein_coding	protein_coding	protein_coding	protein_coding	0	41	2	4.102	4.630655	5.15931	0.0642879	0.043896	0.184676	0.139792
chr8	43062128	43062226	3810911	0	+	0.316327	(0.29,0.33]	chr8	366999	26	INTRON	INTRON	FNTA	ENSG00000168522.13	ENST00000533559.5:ENST00000526755.5:ENST00000302279.8:ENST00000527153.5:ENST00000533383.5:ENST00000533998.5:ENST00000524546.5:ENST00000531266.5:ENST00000533368.1:ENST00000525699.5:ENST00000529687.5:ENST00000533336.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	82	2	3.59602	4.630385	5.66475	0.0164475	0.00672736	0.0877632	0.0519464
chr8	70245574	70245674	3993669	0	-	0.33	(0.29,0.33]	chr8	382239	3	INTRON	INTRON	NCOA2	ENSG00000140396.13	ENST00000452400.7:ENST00000518287.6:ENST00000520416.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	82	2	3.59602	4.630385	5.66475	0.0164475	0.00672736	0.0877632	0.0519464
chr12	132793758	132793857	5540399	0	-	0.555556	(0.523,0.58]	chr12	546816	21	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.60868	4.630125	4.65157	0.0787008	0.0226775	0.175203	0.108193
chr14	89278549	89278649	6026884	0	-	0.56	(0.523,0.58]	chr14	591436	141	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.60868	4.630125	4.65157	0.0787008	0.0226775	0.175203	0.108193
chr15	99603408	99603508	6198715	0	+	0.56	(0.523,0.58]	chr15	609964	9	INTRON	INTRON	MEF2A	ENSG00000068305.18	ENST00000560493.5:ENST00000354410.9:ENST00000558812.5:ENST00000558856.5:ENST00000685785.1:ENST00000559036.5:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000558049.5:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1:ENST00000559903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	37	2	4.60868	4.630125	4.65157	0.0787008	0.0226775	0.175203	0.108193
chr22	36329647	36329746	7806815	0	-	0.545455	(0.523,0.58]	chr22	818135	8	INTRON	INTRON	MYH9	ENSG00000100345.23	ENST00000216181.11:ENST00000685801.1:ENST00000692930.1:ENST00000685187.1:ENST00000691687.1:ENST00000685191.1:ENST00000688137.1:ENST00000401701.1:ENST00000691296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.60868	4.630125	4.65157	0.0787008	0.0226775	0.175203	0.108193
chr17	72555828	72555928	6963869	0	-	0.45	(0.419,0.45]	chr17	710389	214	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	93	2	4.07217	4.630105	5.18804	0.051668	0.00262794	0.148503	0.027842
chr10	79115417	79115517	4532509	0	+	0.54	(0.523,0.58]	chr10	432420	458	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	2.92656	4.6300099999999995	6.33346	0.0289226	0.00571732	0.124	0.0498083
chr15	24987293	24987392	6063718	0	+	0.323232	(0.29,0.33]	chr15	595387	50	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	1	98	2	3.1147	4.62969	6.14468	0.0398517	6.61382e-4	0.133954	0.0106558
chr8	127949235	127949335	3919352	0	+	0.54	(0.523,0.58]	chr8	374241	59	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1	lncRNA	lncRNA	lncRNA	lncRNA	1	85	2	4.04167	4.6294699999999995	5.21727	0.0361597	0.00206682	0.127853	0.0235758
chr2	240521033	240521123	1394645	0	-	0.622222	(0.58,1]	chr2	149020	1	INTRON	INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000405523.7	protein_coding	protein_coding	protein_coding	protein_coding	1	83	2	4.31005	4.629435000000001	4.94882	0.0354433	6.7911e-4	0.127188	0.0108488
chr15	98844832	98844932	6195296	0	+	0.31	(0.29,0.33]	chr15	609677	202	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1:ENST00000557938.5:ENST00000560186.5:ENST00000560277.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	37	2	4.59993	4.6293050000000004	4.65868	0.0735584	0.0243639	0.17026	0.113231
chr2	239338490	239338590	1392095	0	-	0.33	(0.29,0.33]	chr2	148752	140	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.59993	4.6293050000000004	4.65868	0.0735584	0.0243639	0.17026	0.113231
chr20	3351620	3351720	7516304	0	-	0.33	(0.29,0.33]	chr20	784726	26	INTRON	INTRON	DNAAF9	ENSG00000088854.13	ENST00000252032.10	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.59993	4.6293050000000004	4.65868	0.0735584	0.0243639	0.17026	0.113231
chr1	95238054	95238148	190242	0	+	0.393617	(0.39,0.419]	chr1	20626	2	INTRON	INTRON	TLCD4-RWDD3:RWDD3	ENSG00000271092.5:ENSG00000122481.17	ENST00000604534.5:ENST00000604203.1:ENST00000370202.5:ENST00000263893.10:ENST00000492639.5:ENST00000495272.5:ENST00000497058.5:ENST00000473397.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	86	2	3.49059	4.62908	5.76757	0.0204917	0.00994485	0.0979776	0.0666719
chr5	14696991	14697089	2387658	0	+	0.530612	(0.523,0.58]	chr5	238863	41	UTR3	UTR3:EXON_MRNA	OTULIN	ENSG00000154124.5	ENST00000284274.5	protein_coding	protein_coding	protein_coding	protein_coding	2	220	2	4.56174	4.62903	4.69632	0.00322317	3.26856e-4	0.0362983	0.00645438
chr11	7578337	7578437	4792584	0	+	0.46	(0.45,0.485]	chr11	459340	3	INTRON	INTRON	PPFIBP2	ENSG00000166387.14	ENST00000684123.1:ENST00000299492.9:ENST00000527790.5:ENST00000524548.5:ENST00000529575.5:ENST00000533792.5:ENST00000532926.5:ENST00000684215.1:ENST00000650027.1:ENST00000525597.5:ENST00000529021.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.41963	4.62859	4.83755	0.06646	0.0355247	0.162385	0.137983
chr11	46891388	46891486	5034728	0	-	0.469388	(0.45,0.485]	chr11	487181	5	INTRON	INTRON	LRP4	ENSG00000134569.10	ENST00000378623.6	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.41963	4.62859	4.83755	0.06646	0.0355247	0.162385	0.137983
chr12	46443323	46443422	5217620	0	+	0.474747	(0.45,0.485]	chr12	506633	307	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000687751.1:ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2:ENST00000666942.1:ENST00000551503.5:ENST00000657145.1	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.41963	4.62859	4.83755	0.06646	0.0355247	0.162385	0.137983
chr6	15299344	15299444	2857040	0	+	0.47	(0.45,0.485]	chr6	279178	500	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.41963	4.62859	4.83755	0.06646	0.0355247	0.162385	0.137983
chrX	129840382	129840482	8100613	0	-	0.46	(0.45,0.485]	chrX	844772	109	INTRON	INTRON	ZDHHC9	ENSG00000188706.13	ENST00000357166.11:ENST00000371064.7:ENST00000433917.5:ENST00000406492.2	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.41963	4.62859	4.83755	0.06646	0.0355247	0.162385	0.137983
chr1	44242280	44242380	459595	0	-	0.49	(0.485,0.523]	chr1	55306	2	SS3_PROX	SS3_PROX:INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.60518	4.6285799999999995	4.65198	0.0783889	0.0233371	0.175203	0.110098
chr10	79217973	79218073	4533541	0	+	0.52	(0.485,0.523]	chr10	432457	13	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.60518	4.6285799999999995	4.65198	0.0783889	0.0233371	0.175203	0.110098
chr8	18997381	18997481	3951974	0	-	0.5	(0.485,0.523]	chr8	377308	571	INTRON	INTRON	PSD3	ENSG00000156011.18	ENST00000327040.13:ENST00000440756.4:ENST00000521475.1:ENST00000521841.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.60518	4.6285799999999995	4.65198	0.0783889	0.0233371	0.175203	0.110098
chr14	70027043	70027143	5872653	0	+	0.55	(0.523,0.58]	chr14	573363	32	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	3.18279	4.628394999999999	6.074	0.0168396	0.00906277	0.0919482	0.0637469
chrX	9567941	9568041	7843479	0	+	0.59	(0.58,1]	chrX	822423	70	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	90	2	3.13234	4.62839	6.12444	0.0322188	3.17437e-4	0.121593	0.00632787
chr1	109315375	109315472	559135	0	-	0.57732000000000006	(0.523,0.58]	chr1	63978	2	INTRON	INTRON	SORT1	ENSG00000134243.12	ENST00000538502.5:ENST00000256637.8:ENST00000485149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.23973	4.6282499999999995	5.01677	0.0482765	0.0444247	0.153511	0.144601
chr10	119208269	119208369	4593327	0	+	0.53	(0.523,0.58]	chr10	439156	3	SS5_PROX	SS5_PROX:INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.23973	4.6282499999999995	5.01677	0.0482765	0.0444247	0.153511	0.144601
chr11	70809969	70810069	5062383	0	-	0.56	(0.523,0.58]	chr11	492713	24	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.23973	4.6282499999999995	5.01677	0.0482765	0.0444247	0.153511	0.144601
chr12	801447	801547	5149115	0	+	0.56	(0.523,0.58]	chr12	500572	203	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.23973	4.6282499999999995	5.01677	0.0482765	0.0444247	0.153511	0.144601
chr15	37097866	37097966	6228403	0	-	0.55	(0.523,0.58]	chr15	612871	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MEIS2	ENSG00000134138.20	ENST00000338564.9:ENST00000561208.6:ENST00000397624.7:ENST00000340545.9:ENST00000314177.12:ENST00000560570.5:ENST00000559085.5:ENST00000557796.6:ENST00000397620.6:ENST00000424352.6:ENST00000559561.5:ENST00000561163.5:ENST00000558313.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.23973	4.6282499999999995	5.01677	0.0482765	0.0444247	0.153511	0.144601
chr19	48903846	48903946	7280382	0	+	0.56	(0.523,0.58]	chr19	748037	1	SS3_PROX	SS3_PROX:INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000443560.1:ENST00000411700.5:ENST00000451312.5:ENST00000424608.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.23973	4.6282499999999995	5.01677	0.0482765	0.0444247	0.153511	0.144601
chr2	235728578	235728678	1064890	0	+	0.53	(0.523,0.58]	chr2	115681	98	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.23973	4.6282499999999995	5.01677	0.0482765	0.0444247	0.153511	0.144601
chrX	2225527	2225627	7966093	0	-	0.54	(0.523,0.58]	chrX	834328	39	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.23973	4.6282499999999995	5.01677	0.0482765	0.0444247	0.153511	0.144601
chr20	62959618	62959714	7508293	0	+	0.666667	(0.58,1]	chr20	783180	17	INTRON	INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	90	2	3.3216	4.62817	5.93474	0.0230709	5.58693e-4	0.102982	0.00944382
chr17	7177478	7177554	6847850	0	-	0.644737	(0.58,1]	chr17	693466	3	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1:ENST00000573596.1:ENST00000573083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	140	2	2.58575	4.628105	6.67046	0.00941356	0.00135763	0.0648709	0.0224546
chr6	144306275	144306375	3020070	0	+	0.55	(0.523,0.58]	chr6	295138	140	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	3.03457	4.62792	6.22127	0.0231444	0.00699217	0.109883	0.0555241
chr7	5063394	5063494	3311322	0	+	0.33	(0.29,0.33]	chr7	320996	3	SS3_PROX	SS3_PROX:INTRON	RBAK	ENSG00000146587.18	ENST00000353796.7:ENST00000396912.2:ENST00000476992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.2311	4.627525	5.02395	0.0471437	0.0445554	0.156915	0.140478
chr8	134222251	134222351	4085869	0	-	0.31	(0.29,0.33]	chr8	388485	232	INTRON	INTRON	ENSG00000288067	ENSG00000288067.1	ENST00000661266.1	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.2311	4.627525	5.02395	0.0471437	0.0445554	0.156915	0.140478
chr12	46783129	46783229	5221026	0	+	0.27	[0,0.29]	chr12	506670	1307	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.25528	4.62726	4.99924	0.0399299	0.0347661	0.144065	0.126529
chr1	17670789	17670888	54919	0	+	0.626263	(0.58,1]	chr1	5603	58	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.49116	4.627	4.76284	0.0471737	0.0207449	0.143232	0.102713
chr13	98537496	98537596	5747896	0	-	0.68	(0.58,1]	chr13	563357	156	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.49116	4.627	4.76284	0.0471737	0.0207449	0.143232	0.102713
chr16	85430518	85430618	6517376	0	+	0.66	(0.58,1]	chr16	646391	712	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.49116	4.627	4.76284	0.0471737	0.0207449	0.143232	0.102713
chr2	239340688	239340788	1392117	0	-	0.6	(0.58,1]	chr2	148752	162	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.49116	4.627	4.76284	0.0471737	0.0207449	0.143232	0.102713
chr6	158022880	158022980	3059721	0	+	0.6	(0.58,1]	chr6	297373	47	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.49116	4.627	4.76284	0.0471737	0.0207449	0.143232	0.102713
chr9	133911668	133911768	4429517	0	-	0.51	(0.485,0.523]	chr9	423310	499	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.23628	4.626735	5.01719	0.0480495	0.045492200000000003	0.154539	0.144601
chr17	7177721	7177812	6847853	0	-	0.549451	(0.523,0.58]	chr17	693467	2	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574388.5:ENST00000573596.1:ENST00000573083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	109	2	3.1794	4.6267	6.074	0.00906277	0.00624033	0.0637469	0.0497314
chr2	75523084	75523181	1194409	0	-	0.484536	(0.45,0.485]	chr2	129869	2	INTRON	INTRON	EVA1A	ENSG00000115363.14	ENST00000485891.1:ENST00000490746.5:ENST00000233712.5:ENST00000393913.8:ENST00000410113.5:ENST00000410071.5:ENST00000432649.5:ENST00000486696.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	112	2	3.04016	4.626555	6.21295	0.00944306	0.00810629	0.0650078	0.0602166
chr2	78263594	78263694	1210086	0	-	0.32	(0.29,0.33]	chr2	130071	3234	INTRON	INTRON	ENSG00000227088	ENSG00000227088.2	ENST00000667782.1	lncRNA	lncRNA	lncRNA	lncRNA	2	112	2	3.45626	4.62639	5.79652	0.0131751	0.00319607	0.0785398	0.0317689
chr2	102143220	102143320	863820	0	+	0.51	(0.485,0.523]	chr2	97796	2	SS5_PROX	SS5_PROX:INTRON	IL1R1	ENSG00000115594.12	ENST00000452403.5:ENST00000409929.5:ENST00000424272.5:ENST00000409589.5:ENST00000409329.5:ENST00000450319.5:ENST00000428279.5:ENST00000442590.5:ENST00000410023.6:ENST00000409288.5	protein_coding	protein_coding	protein_coding	protein_coding	3	290	2	4.53126	4.6263749999999995	4.72149	0.00340083	7.77922e-5	0.0373142	0.00227427
chr22	29967178	29967278	7710200	0	+	0.52	(0.485,0.523]	chr22	806661	97	INTRON	INTRON	MTMR3	ENSG00000100330.16	ENST00000333027.7:ENST00000401950.7:ENST00000495098.5:ENST00000445401.5:ENST00000323630.9:ENST00000351488.7:ENST00000415511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	100	2	3.37817	4.62624	5.87431	0.0271129	0.00127835	0.112113	0.0168904
chr2	232750770	232750869	1055832	0	+	0.383838	(0.36,0.39]	chr2	114812	13	INTRON	INTRON	GIGYF2	ENSG00000204120.16	ENST00000629305.2:ENST00000428883.5:ENST00000409480.5:ENST00000456491.5:ENST00000373563.9:ENST00000409547.5:ENST00000430720.5:ENST00000425040.5:ENST00000421433.5:ENST00000423659.5:ENST00000409196.7:ENST00000409451.7:ENST00000463554.5:ENST00000440945.5:ENST00000429187.5:ENST00000424038.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	86	2	3.42171	4.626125	5.83054	0.0182399	0.0115651	0.0921579	0.0732257
chr3	186103505	186103605	1972210	0	-	0.48	(0.45,0.485]	chr3	200543	78	INTRON	INTRON	ETV5	ENSG00000244405.8	ENST00000306376.10:ENST00000434744.5:ENST00000472868.6:ENST00000440773.5:ENST00000421809.5:ENST00000413301.5:ENST00000422039.1:ENST00000476890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	114	2	3.47091	4.625935	5.78096	0.0166968	0.00321606	0.0884836	0.0319521
chr19	36851533	36851625	7249347	0	+	0.478261	(0.45,0.485]	chr19	743114	5	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	ZNF345	ENSG00000251247.12	ENST00000589046.1:ENST00000586933.5:ENST00000420450.6:ENST00000614069.4:ENST00000532141.5:ENST00000526123.5:ENST00000432005.6:ENST00000529555.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	104	2	2.76944	4.62587	6.4823	0.0716626	2.88849e-4	0.168159	0.00590733
chr16	570860	570960	6368123	0	+	0.57	(0.523,0.58]	chr16	627949	1	SS5_PROX	SS5_PROX:INTRON	PIGQ	ENSG00000007541.17	ENST00000293874.2:ENST00000409527.6:ENST00000321878.10:ENST00000439574.1:ENST00000422307.6:ENST00000636657.1:ENST00000026218.9:ENST00000470411.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	82	2	3.4003	4.625585	5.85087	0.0132767	0.0103016	0.0787251	0.0678983
chr1	33260617	33260716	85437	0	+	0.545455	(0.523,0.58]	chr1	9933	36	INTRON	INTRON	ZNF362	ENSG00000160094.15	ENST00000539719.6:ENST00000483388.5:ENST00000490959.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	40	2	4.13061	4.625555	5.1205	0.0533354	0.0416463	0.167062	0.136301
chr10	79178112	79178212	4533138	0	+	0.56	(0.523,0.58]	chr10	432438	156	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.13061	4.625555	5.1205	0.0533354	0.0416463	0.167062	0.136301
chr16	85515383	85515483	6518225	0	+	0.57	(0.523,0.58]	chr16	646391	1561	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	40	2	4.13061	4.625555	5.1205	0.0533354	0.0416463	0.167062	0.136301
chr7	75949031	75949130	3396948	0	+	0.545455	(0.523,0.58]	chr7	328066	14	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000449920.5:ENST00000418341.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.13061	4.625555	5.1205	0.0533354	0.0416463	0.167062	0.136301
chr6	20810523	20810623	2866705	0	+	0.42	(0.419,0.45]	chr6	279734	289	INTRON	INTRON	CDKAL1	ENSG00000145996.11	ENST00000274695.8:ENST00000378610.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.56048	4.625405000000001	4.69033	0.0958674	0.0337332	0.189038	0.133139
chr11	96076595	96076695	5110901	0	-	0.53	(0.523,0.58]	chr11	496560	845	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6:ENST00000618849.1	protein_coding	protein_coding	protein_coding	protein_coding	1	119	2	4.04945	4.625245	5.20104	0.00846308	0.00648051	0.0617717	0.0503748
chr7	155724938	155725038	3519336	0	+	0.43	(0.419,0.45]	chr7	339832	61	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	245	2	4.53238	4.62521	4.71804	0.00498128	4.87914e-4	0.046383	0.00860026
chr1	116416474	116416572	567910	0	-	0.387755	(0.36,0.39]	chr1	65306	22	INTRON	INTRON	ATP1A1-AS1	ENSG00000203865.12	ENST00000675607.1:ENST00000674941.1:ENST00000675742.1:ENST00000675524.1:ENST00000608511.6:ENST00000493908.2:ENST00000675545.1:ENST00000675659.1:ENST00000674823.1:ENST00000674834.1:ENST00000369492.5:ENST00000369491.2:ENST00000674553.1:ENST00000675762.1:ENST00000676321.1	lncRNA	lncRNA	lncRNA	lncRNA	0	40	2	4.20082	4.6251549999999995	5.04949	0.0581116	0.0563927	0.175217	0.154188
chr17	18926773	18926873	6693797	0	+	0.47	(0.45,0.485]	chr17	672024	24	INTRON	INTRON	PRPSAP2	ENSG00000141127.15	ENST00000610773.4:ENST00000492129.5:ENST00000419071.6:ENST00000536323.5:ENST00000268835.7:ENST00000395656.6:ENST00000542013.5:ENST00000574451.5:ENST00000460724.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	85	2	3.26377	4.624890000000001	5.98601	0.0149252	0.0119228	0.0848525	0.0741726
chr9	37992825	37992925	4303015	0	-	0.48	(0.45,0.485]	chr9	411610	176	INTRON	INTRON	SHB	ENSG00000107338.10	ENST00000377707.4	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	3.26377	4.624890000000001	5.98601	0.0149252	0.0119228	0.0848525	0.0741726
chr20	8523431	8523531	7430502	0	+	0.33	(0.29,0.33]	chr20	773698	1514	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.12201	4.624855	5.1277	0.0564091	0.0382902	0.171933	0.131324
chr10	75948917	75949017	4525658	0	+	0.39	(0.36,0.39]	chr10	432292	650	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.48559	4.624745	4.7639	0.0811309	0.036329	0.177951	0.139793
chr18	49817252	49817351	7060350	0	+	0.363636	(0.36,0.39]	chr18	720434	28	INTRON	INTRON	SNHG22	ENSG00000267322.3	ENST00000589499.1	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.48559	4.624745	4.7639	0.0811309	0.036329	0.177951	0.139793
chr2	25662679	25662779	1108886	0	-	0.37	(0.36,0.39]	chr2	120942	96	INTRON	INTRON	DTNB	ENSG00000138101.20	ENST00000404103.7:ENST00000405222.5:ENST00000407038.7:ENST00000407661.7:ENST00000406818.8:ENST00000398951.6:ENST00000288642.12:ENST00000407186.5:ENST00000356599.9:ENST00000493538.5:ENST00000349996.6:ENST00000486826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.48559	4.624745	4.7639	0.0811309	0.036329	0.177951	0.139793
chr3	141550070	141550169	1589090	0	+	0.363636	(0.36,0.39]	chr3	167818	91	INTRON	INTRON	RASA2	ENSG00000155903.14	ENST00000286364.9	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.48559	4.624745	4.7639	0.0811309	0.036329	0.177951	0.139793
chr21	43744138	43744222	7624051	0	+	0.714286	(0.58,1]	chr21	796747	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000498040.5:ENST00000472777.5:ENST00000481512.5:ENST00000490666.5:ENST00000467908.1:ENST00000343528.10:ENST00000398078.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	86	2	2.91493	4.62465	6.33437	0.0259506	0.00276493	0.116361	0.0332418
chr6	2209056	2209156	3084974	0	-	0.31	(0.29,0.33]	chr6	299526	332	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5	protein_coding	protein_coding	protein_coding	protein_coding	2	110	2	3.27492	4.62448	5.97404	0.0096909	0.00510923	0.0661757	0.0434253
chr19	17483581	17483681	7220768	0	+	0.53	(0.523,0.58]	chr19	738260	3	SS3_PROX	SS3_PROX:INTRON	SLC27A1	ENSG00000130304.17	ENST00000600277.5:ENST00000598424.5:ENST00000252595.12:ENST00000599380.5:ENST00000600297.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	89	2	2.98158	4.62439	6.2672	0.0258432	0.00644151	0.116361	0.0530091
chr8	639485	639585	3932115	0	-	0.52	(0.485,0.523]	chr8	376009	15	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1:ENST00000523709.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	85	2	4.03042	4.624055	5.21769	0.0359739	0.00217615	0.127853	0.0243911
chr14	68975532	68975628	6000112	0	-	0.489583	(0.485,0.523]	chr14	588771	9	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000683261.1:ENST00000553370.5:ENST00000682602.1:ENST00000556571.1:ENST00000553659.1:ENST00000556203.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	40	2	4.12717	4.624045	5.12092	0.0545434	0.0414411	0.167824	0.136301
chr20	8169667	8169767	7426956	0	+	0.49	(0.485,0.523]	chr20	773674	189	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	40	2	4.12717	4.624045	5.12092	0.0545434	0.0414411	0.167824	0.136301
chr1	206733304	206733401	327096	0	+	0.649485	(0.58,1]	chr1	36847	7	UTR3	UTR3:EXON_MRNA	MAPKAPK2	ENSG00000162889.11	ENST00000367103.4	protein_coding	protein_coding	protein_coding	protein_coding	2	194	2	3.89863	4.62402	5.34941	0.00766639	2.31411e-5	0.0583292	9.3627e-4
chr1	44811752	44811825	115018	0	+	0.410959	(0.39,0.419]	chr1	14289	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	BTBD19	ENSG00000222009.9	ENST00000450269.6:ENST00000409335.6:ENST00000439563.2:ENST00000485668.5:ENST00000482715.5:ENST00000475105.5:ENST00000495433.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.48504	4.623805	4.76257	0.0822354	0.0364893	0.179396	0.139793
chr15	56694307	56694405	6276186	0	-	0.408163	(0.39,0.419]	chr15	618563	7	INTRON	INTRON	ZNF280D	ENSG00000137871.21	ENST00000267807.12:ENST00000559237.5:ENST00000560002.5:ENST00000558002.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.48504	4.623805	4.76257	0.0822354	0.0364893	0.179396	0.139793
chr22	33719407	33719506	7800858	0	-	0.414141	(0.39,0.419]	chr22	817631	146	INTRON	INTRON	LARGE1	ENSG00000133424.22	ENST00000608642.6:ENST00000609799.6:ENST00000610186.6:ENST00000397394.8:ENST00000413114.6:ENST00000676070.1:ENST00000674543.1:ENST00000676370.1:ENST00000354992.7:ENST00000402320.6:ENST00000675416.1:ENST00000676132.1:ENST00000676126.1:ENST00000675382.1:ENST00000676031.1:ENST00000674668.1:ENST00000674789.1:ENST00000675277.1:ENST00000434071.6:ENST00000432776.6:ENST00000423375.2:ENST00000430220.7:ENST00000476315.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.48504	4.623805	4.76257	0.0822354	0.0364893	0.179396	0.139793
chr3	179598374	179598474	1963557	0	-	0.4	(0.39,0.419]	chr3	199522	3	SS5_PROX	SS5_PROX:INTRON	MRPL47	ENSG00000136522.14	ENST00000476781.6:ENST00000259038.6:ENST00000392659.2	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.48504	4.623805	4.76257	0.0822354	0.0364893	0.179396	0.139793
chr4	25410091	25410191	2020324	0	+	0.4	(0.39,0.419]	chr4	206593	3	SS5_PROX	SS5_PROX:INTRON	ANAPC4	ENSG00000053900.11	ENST00000315368.8:ENST00000510092.5:ENST00000505842.5:ENST00000504256.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.48504	4.623805	4.76257	0.0822354	0.0364893	0.179396	0.139793
chr4	87000455	87000555	2079743	0	+	0.4	(0.39,0.419]	chr4	212193	265	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.48504	4.623805	4.76257	0.0822354	0.0364893	0.179396	0.139793
chr6	131644628	131644728	3006962	0	+	0.4	(0.39,0.419]	chr6	294028	27	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000427707.5:ENST00000414305.5:ENST00000357639.8:ENST00000358229.6:ENST00000423831.5:ENST00000470930.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.48504	4.623805	4.76257	0.0822354	0.0364893	0.179396	0.139793
chr15	60496656	60496756	6284473	0	-	0.41	(0.39,0.419]	chr15	619448	85	UTR3	UTR3:EXON_MRNA	RORA	ENSG00000069667.16	ENST00000335670.11	protein_coding	protein_coding	protein_coding	protein_coding	1	115	2	3.75165	4.623755	5.49586	0.0173118	0.00479873	0.0898477	0.0416285
chr14	104891896	104891993	5926145	0	+	0.639175	(0.58,1]	chr14	579999	18	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	2	102	2	3.00436	4.623405	6.24245	0.00785951	0.00334087	0.0576181	0.0368376
chr12	132731531	132731628	5539808	0	-	0.247423	[0,0.29]	chr12	546675	14	UTR5	UTR5:EXON_MRNA:INTRON	ANKLE2	ENSG00000176915.15	ENST00000357997.10:ENST00000539605.5:ENST00000542282.5:ENST00000542657.5:ENST00000542374.5:ENST00000538766.1:ENST00000505031.6:ENST00000439231.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.54275	4.62319	4.70363	0.0681032	0.0169854	0.164448	0.0923809
chr6	13659032	13659132	3097565	0	-	0.29	[0,0.29]	chr6	300672	2	SS3_PROX	SS3_PROX:INTRON	RANBP9	ENSG00000010017.13	ENST00000011619.6	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.54275	4.62319	4.70363	0.0681032	0.0169854	0.164448	0.0923809
chr8	13195967	13196067	3940467	0	-	0.23	[0,0.29]	chr8	376715	626	INTRON	INTRON	DLC1	ENSG00000164741.15	ENST00000276297.9:ENST00000512044.6:ENST00000509922.5:ENST00000503161.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.54275	4.62319	4.70363	0.0681032	0.0169854	0.164448	0.0923809
chr9	122274563	122274662	4233204	0	+	0.282828	[0,0.29]	chr9	401854	31	INTRON	INTRON	MRRF	ENSG00000148187.18	ENST00000297908.7:ENST00000344641.8:ENST00000441707.5:ENST00000373723.9:ENST00000373729.5:ENST00000373728.6:ENST00000373727.5:ENST00000470366.5:ENST00000373724.1:ENST00000467864.5:ENST00000489572.5:ENST00000394315.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.54275	4.62319	4.70363	0.0681032	0.0169854	0.164448	0.0923809
chr1	17679479	17679579	55006	0	+	0.56	(0.523,0.58]	chr1	5603	145	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.34118	4.6230899999999995	4.905	0.0563605	0.0372357	0.154188	0.139793
chr10	79178712	79178811	4533144	0	+	0.575758	(0.523,0.58]	chr10	432438	162	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.34118	4.6230899999999995	4.905	0.0563605	0.0372357	0.154188	0.139793
chr17	17772535	17772635	6689761	0	+	0.54	(0.523,0.58]	chr17	671344	480	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.34118	4.6230899999999995	4.905	0.0563605	0.0372357	0.154188	0.139793
chr19	44706165	44706265	7386648	0	-	0.55	(0.523,0.58]	chr19	766957	66	INTRON	INTRON	CEACAM16-AS1	ENSG00000266903.2	ENST00000662585.1:ENST00000590796.1	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.34118	4.6230899999999995	4.905	0.0563605	0.0372357	0.154188	0.139793
chr22	46775930	46776029	7745138	0	+	0.575758	(0.523,0.58]	chr22	812164	13	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000441936.5:ENST00000486163.5:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000496139.5:ENST00000472791.5:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.34118	4.6230899999999995	4.905	0.0563605	0.0372357	0.154188	0.139793
chr10	79242568	79242668	4533787	0	+	0.71	(0.58,1]	chr10	432457	259	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.18518	4.62294	5.0607	0.0374658	0.029633	0.139793	0.116079
chr19	15645863	15645963	7215413	0	+	0.65	(0.58,1]	chr19	737143	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1:ENST00000609670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.18518	4.62294	5.0607	0.0374658	0.029633	0.139793	0.116079
chr2	73283454	73283553	1190772	0	-	0.59596	(0.58,1]	chr2	129050	100	INTRON	INTRON	FBXO41	ENSG00000163013.12	ENST00000520530.3:ENST00000521871.5:ENST00000520186.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.18518	4.62294	5.0607	0.0374658	0.029633	0.139793	0.116079
chr8	17547978	17548077	3763515	0	+	0.373737	(0.36,0.39]	chr8	361508	30	INTRON	INTRON	SLC7A2	ENSG00000003989.18	ENST00000494857.6:ENST00000522656.5:ENST00000470360.5:ENST00000004531.14:ENST00000398090.3:ENST00000640220.1	protein_coding	protein_coding	protein_coding	protein_coding	1	93	2	2.95428	4.6227800000000006	6.29128	0.0305895	0.0086512	0.126768	0.0623824
chr9	131439061	131439161	4258071	0	+	0.55	(0.523,0.58]	chr9	405631	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	1	81	2	3.55341	4.62249	5.69157	0.0172851	0.00716661	0.0897247	0.0541871
chr1	169181347	169181447	612721	0	-	0.46	(0.45,0.485]	chr1	72645	114	INTRON	INTRON	NME7	ENSG00000143156.14	ENST00000472647.5:ENST00000367811.8:ENST00000493481.1:ENST00000530739.5:ENST00000525440.5:ENST00000483228.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.49786	4.622135	4.74641	0.101311	0.0193126	0.196131	0.0994526
chr1	248856897	248856979	709868	0	-	0.463415	(0.45,0.485]	chr1	83031	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF692	ENSG00000171163.16	ENST00000463519.5:ENST00000306601.9:ENST00000366471.7:ENST00000533927.5:ENST00000477070.6:ENST00000412341.6:ENST00000451251.5:ENST00000470787.6:ENST00000478107.5:ENST00000491971.5:ENST00000496411.5:ENST00000468455.5:ENST00000483223.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.49786	4.622135	4.74641	0.101311	0.0193126	0.196131	0.0994526
chr19	19074307	19074407	7225612	0	+	0.46	(0.45,0.485]	chr19	739606	98	INTRON	INTRON	SLC25A42	ENSG00000181035.14	ENST00000318596.8:ENST00000597661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.49786	4.622135	4.74641	0.101311	0.0193126	0.196131	0.0994526
chr21	44810209	44810307	7678235	0	-	0.479592	(0.45,0.485]	chr21	802721	7	INTRON	INTRON	SUMO3	ENSG00000184900.16	ENST00000479153.1:ENST00000411651.6:ENST00000332859.11:ENST00000397898.7:ENST00000397893.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.49786	4.622135	4.74641	0.101311	0.0193126	0.196131	0.0994526
chr1	12594788	12594888	402551	0	-	0.53	(0.523,0.58]	chr1	46222	138	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.5249	4.622059999999999	4.71922	0.0721601	0.0266135	0.168159	0.118113
chr10	103717779	103717879	4757278	0	-	0.56	(0.523,0.58]	chr10	454791	243	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.5249	4.622059999999999	4.71922	0.0721601	0.0266135	0.168159	0.118113
chr12	7101106	7101203	5364676	0	-	0.57732000000000006	(0.523,0.58]	chr12	525793	7	INTRON	INTRON	C1RL	ENSG00000139178.12	ENST00000545280.5:ENST00000266542.9:ENST00000544702.5:ENST00000534950.1:ENST00000543933.5:ENST00000537833.6:ENST00000534969.2	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	0	37	2	4.5249	4.622059999999999	4.71922	0.0721601	0.0266135	0.168159	0.118113
chr16	8712636	8712736	6381516	0	+	0.57	(0.523,0.58]	chr16	631147	292	INTRON	INTRON	ABAT	ENSG00000183044.12	ENST00000564714.5:ENST00000268251.13:ENST00000563992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.5249	4.622059999999999	4.71922	0.0721601	0.0266135	0.168159	0.118113
chr18	32769344	32769444	7143407	0	-	0.53	(0.523,0.58]	chr18	726511	3	SS5_PROX	SS5_PROX:INTRON	KLHL14	ENSG00000197705.10	ENST00000359358.9:ENST00000358095.4	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.5249	4.622059999999999	4.71922	0.0721601	0.0266135	0.168159	0.118113
chr6	129661990	129662090	3259435	0	-	0.55	(0.523,0.58]	chr6	315424	196	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.5249	4.622059999999999	4.71922	0.0721601	0.0266135	0.168159	0.118113
chrX	47571012	47571112	7878263	0	+	0.54	(0.523,0.58]	chrX	825903	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARAF	ENSG00000078061.14	ENST00000377045.9:ENST00000470206.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.5249	4.622059999999999	4.71922	0.0721601	0.0266135	0.168159	0.118113
chr11	83196308	83196406	4908717	0	+	0.377551	(0.36,0.39]	chr11	473848	12	INTRON	INTRON	ANKRD42	ENSG00000137494.14	ENST00000533342.6:ENST00000393389.7:ENST00000528722.5:ENST00000260047.10:ENST00000526731.5:ENST00000531895.5:ENST00000393392.6	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.30212	4.6220300000000005	4.94194	0.064883	0.0494303	0.162218	0.160725
chr17	58087322	58087422	6764136	0	+	0.46	(0.45,0.485]	chr17	682236	1	SS5_PROX	SS5_PROX:INTRON	DYNLL2	ENSG00000264364.3	ENST00000579991.3	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.5725	4.621945	4.67139	0.0926859	0.0223378	0.188571	0.108193
chr18	12539591	12539691	7121685	0	-	0.46	(0.45,0.485]	chr18	724791	36	INTRON	INTRON	SPIRE1	ENSG00000134278.16	ENST00000409402.9:ENST00000410092.7:ENST00000309836.9:ENST00000440472.6:ENST00000453447.6:ENST00000449797.5:ENST00000497844.6:ENST00000462226.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.5725	4.621945	4.67139	0.0926859	0.0223378	0.188571	0.108193
chr5	176935839	176935939	2816583	0	-	0.46	(0.45,0.485]	chr5	275838	162	INTRON	INTRON	UIMC1	ENSG00000087206.17	ENST00000377227.8:ENST00000511320.6:ENST00000506128.5:ENST00000512031.5:ENST00000510698.2:ENST00000503273.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.5725	4.621945	4.67139	0.0926859	0.0223378	0.188571	0.108193
chr6	127276348	127276447	3005065	0	+	0.474747	(0.45,0.485]	chr6	293882	89	INTRON	INTRON	RNF146	ENSG00000118518.17	ENST00000476956.5:ENST00000609447.5:ENST00000356799.6:ENST00000495188.2:ENST00000368314.6:ENST00000477776.5:ENST00000609944.5:ENST00000608991.5:ENST00000610153.1:ENST00000489534.5:ENST00000610162.5:ENST00000608340.5:ENST00000480444.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	37	2	4.5725	4.621945	4.67139	0.0926859	0.0223378	0.188571	0.108193
chr12	6767629	6767724	5165692	0	+	0.663158	(0.58,1]	chr12	502315	5	INTRON	INTRON	PTMS	ENSG00000159335.18	ENST00000540667.5:ENST00000309083.8:ENST00000389462.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	130	2	3.30908	4.62191	5.93474	0.0104949	5.58693e-4	0.0690941	0.00944382
chr10	102651768	102651867	4576542	0	+	0.646465	(0.58,1]	chr10	437284	21	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1:ENST00000487927.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.29454	4.62168	4.94882	0.0354433	0.0305531	0.127188	0.126768
chr11	70804714	70804813	5062330	0	-	0.606061	(0.58,1]	chr11	492707	58	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5:ENST00000460048.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.29454	4.62168	4.94882	0.0354433	0.0305531	0.127188	0.126768
chr11	70946609	70946709	5063757	0	-	0.59	(0.58,1]	chr11	492740	497	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000618363.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	37	2	4.29454	4.62168	4.94882	0.0354433	0.0305531	0.127188	0.126768
chr13	113021643	113021743	5655841	0	+	0.68	(0.58,1]	chr13	555145	64	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.29454	4.62168	4.94882	0.0354433	0.0305531	0.127188	0.126768
chr17	81136400	81136500	6982866	0	-	0.69	(0.58,1]	chr17	713268	15	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.29454	4.62168	4.94882	0.0354433	0.0305531	0.127188	0.126768
chr19	48903459	48903555	7280378	0	+	0.625	(0.58,1]	chr19	748036	20	INTRON	INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000443560.1:ENST00000411700.5:ENST00000451312.5:ENST00000424608.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.29454	4.62168	4.94882	0.0354433	0.0305531	0.127188	0.126768
chr19	954488	954588	7185391	0	+	0.5	(0.485,0.523]	chr19	730741	214	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.33772	4.62157	4.90542	0.0561086	0.03818	0.154188	0.140822
chr19	32963895	32963993	7363694	0	-	0.510204	(0.485,0.523]	chr19	763259	35	INTRON	INTRON	CEP89	ENSG00000121289.18	ENST00000305768.10:ENST00000586984.6:ENST00000590597.6:ENST00000593276.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.33772	4.62157	4.90542	0.0561086	0.03818	0.154188	0.140822
chr22	45594712	45594812	7740233	0	+	0.5	(0.485,0.523]	chr22	811612	164	INTRON	INTRON	FBLN1	ENSG00000077942.19	ENST00000327858.11	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.33772	4.62157	4.90542	0.0561086	0.03818	0.154188	0.140822
chr3	129396116	129396195	1911579	0	-	0.506329	(0.485,0.523]	chr3	194160	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RPL32P3	ENSG00000251474.7	ENST00000510078.5:ENST00000507287.5:ENST00000687239.1:ENST00000514355.5:ENST00000507238.5:ENST00000515866.5:ENST00000499631.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	38	2	4.33772	4.62157	4.90542	0.0561086	0.03818	0.154188	0.140822
chr19	15644451	15644551	7215398	0	+	0.5	(0.485,0.523]	chr19	737138	4	SS5_PROX	SS5_PROX:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	100	2	3.40249	4.621315	5.84014	0.0260491	0.00139792	0.109673	0.0179863
chr2	222865874	222865974	1037750	0	+	0.36	(0.33,0.36]	chr2	113180	3	SS5_PROX	SS5_PROX:INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	84	2	3.52816	4.621275	5.71439	0.0191308	0.00867795	0.0952349	0.0612699
chr2	30160135	30160234	743789	0	+	0.323232	(0.29,0.33]	chr2	86836	14	UTR3	UTR3:EXON_MRNA	YPEL5	ENSG00000119801.13	ENST00000379520.7:ENST00000379519.7:ENST00000261353.9:ENST00000402003.7	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.51618	4.621265	4.72635	0.0672935	0.0285091	0.163263	0.123012
chr8	9774096	9774193	3754919	0	+	0.309278	(0.29,0.33]	chr8	360888	13	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.51618	4.621265	4.72635	0.0672935	0.0285091	0.163263	0.123012
chr1	34991179	34991272	443275	0	-	0.397849	(0.39,0.419]	chr1	52726	5	INTRON	INTRON	ENSG00000271741:ZMYM6	ENSG00000271741.1:ENSG00000163867.17	ENST00000487874.1:ENST00000357182.9:ENST00000493328.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.30157	4.621085	4.9406	0.0658437	0.0496288	0.162385	0.160725
chr6	2270391	2270483	2824629	0	+	0.413043	(0.39,0.419]	chr6	277261	2	INTRON	INTRON	GMDS-DT	ENSG00000250903.10	ENST00000657072.1:ENST00000529893.6:ENST00000659523.1:ENST00000659643.1:ENST00000660978.1:ENST00000691004.1:ENST00000664738.1:ENST00000532124.6:ENST00000691547.1:ENST00000663428.1:ENST00000654526.1:ENST00000670895.1:ENST00000532564.8:ENST00000685772.1:ENST00000687264.1:ENST00000660533.1:ENST00000531092.6:ENST00000524770.6:ENST00000657589.1:ENST00000607519.2:ENST00000456943.6:ENST00000525811.5:ENST00000534441.5:ENST00000534468.1:ENST00000530346.6:ENST00000662000.1:ENST00000665610.1:ENST00000654970.1	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.30157	4.621085	4.9406	0.0658437	0.0496288	0.162385	0.160725
chr9	100132154	100132254	4198282	0	+	0.29	[0,0.29]	chr9	398925	2	SS5_PROX	SS5_PROX:INTRON	INVS	ENSG00000119509.13	ENST00000262457.7:ENST00000496467.5:ENST00000262456.6:ENST00000466647.5:ENST00000460636.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.61749	4.620955	4.62442	0.061376	0.019938	0.158506	0.100864
chr3	9468872	9468971	1402847	0	+	0.333333	(0.33,0.36]	chr3	150230	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000406341.5:ENST00000670063.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000466242.5:ENST00000682236.1:ENST00000421188.1:ENST00000687014.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	161	2	3.05445	4.62083	6.18721	0.00877878	0.00407553	0.0630845	0.0373578
chr16	81646575	81646673	6509765	0	+	0.44898	(0.419,0.45]	chr16	645932	4	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8:ENST00000564666.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	89	2	3.1968	4.620605	6.04441	0.0193853	0.0149622	0.0994526	0.0835955
chr13	113614837	113614936	5659149	0	+	0.515152	(0.485,0.523]	chr13	555781	34	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	89	2	4.22394	4.620565	5.01719	0.0480495	0.00129102	0.144601	0.0170457
chr19	56838014	56838113	7410701	0	-	0.585859	(0.58,1]	chr19	771674	3	INTRON	INTRON	ZIM2:PEG3	ENSG00000269699.7:ENSG00000198300.14	ENST00000593711.6:ENST00000689654.1:ENST00000629319.3:ENST00000599935.5:ENST00000693159.1:ENST00000650111.1:ENST00000648694.1:ENST00000326441.15:ENST00000649233.1:ENST00000649680.1:ENST00000649876.1:ENST00000650632.1:ENST00000650102.1:ENST00000649735.1:ENST00000647621.1:ENST00000598410.5:ENST00000593695.5:ENST00000599577.5:ENST00000594389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	79	2	3.20215	4.62054	6.03893	0.0136092	0.00503456	0.0811697	0.0464858
chr12	1440491	1440591	5154800	0	+	0.49	(0.485,0.523]	chr12	500919	93	INTRON	INTRON	ERC1	ENSG00000082805.21	ENST00000543086.7:ENST00000360905.9:ENST00000542302.6:ENST00000546231.6:ENST00000347735.10:ENST00000397203.7:ENST00000440394.7:ENST00000545948.5:ENST00000589028.6:ENST00000355446.9:ENST00000538971.6:ENST00000588412.5:ENST00000539802.2:ENST00000691140.1:ENST00000515210.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.52142	4.6205300000000005	4.71964	0.0718646	0.0273555	0.168159	0.119337
chr5	134001294	134001393	2764132	0	-	0.50505	(0.485,0.523]	chr5	270978	79	INTRON	INTRON	VDAC1	ENSG00000213585.11	ENST00000265333.8:ENST00000395044.7:ENST00000395047.6:ENST00000425992.2:ENST00000466080.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.52142	4.6205300000000005	4.71964	0.0718646	0.0273555	0.168159	0.119337
chr6	2167631	2167731	3084558	0	-	0.51	(0.485,0.523]	chr6	299521	425	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.52142	4.6205300000000005	4.71964	0.0718646	0.0273555	0.168159	0.119337
chr13	97232831	97232931	5630909	0	+	0.43	(0.419,0.45]	chr13	553173	99	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	328	2	3.79874	4.62033	5.44192	0.00839816	6.35148e-5	0.0616197	0.00195296
chr7	112203901	112204001	3692547	0	-	0.34	(0.33,0.36]	chr7	354969	1994	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	84	2	3.62829	4.6202000000000005	5.61211	0.022456	0.00687304	0.102751	0.0526888
chr16	18520012	18520096	6559083	0	-	0.547619	(0.523,0.58]	chr16	653699	4	SS3_PROX	SS3_PROX:INTRON	NOMO2	ENSG00000185164.15	ENST00000330537.10:ENST00000381474.7:ENST00000564991.5:ENST00000621364.4:ENST00000622306.5:ENST00000543392.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	82	2	3.35934	4.62003	5.88072	0.0126258	0.0113252	0.0761905	0.071894
chr19	942119	942219	7185267	0	+	0.71	(0.58,1]	chr19	730741	90	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	101	2	3.07041	4.61993	6.16945	0.00661304	0.00387582	0.0512951	0.0401256
chr21	42847146	42847245	7675443	0	-	0.525253	(0.523,0.58]	chr21	802287	35	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	3	143	2	3.54785	4.6197099999999995	5.69157	0.0172851	0.00127204	0.0897247	0.016856
chr13	50209006	50209106	5594686	0	+	0.59	(0.58,1]	chr13	551532	226	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000485007.5:ENST00000475913.5:ENST00000484529.5	lncRNA	lncRNA	lncRNA	lncRNA	1	75	2	3.60807	4.619625	5.63118	0.0109983	0.00495688	0.0708586	0.0425347
chr17	81148292	81148392	6982985	0	-	0.65	(0.58,1]	chr17	713268	134	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	75	2	3.60807	4.619625	5.63118	0.0109983	0.00495688	0.0708586	0.0425347
chr10	110079397	110079497	4583567	0	+	0.41	(0.39,0.419]	chr10	438160	1	SS5_PROX	SS5_PROX:INTRON	ADD3	ENSG00000148700.15	ENST00000468251.5:ENST00000360162.7:ENST00000277900.12:ENST00000356080.9:ENST00000484622.5:ENST00000487085.5:ENST00000459738.5:ENST00000497125.5:ENST00000495661.5:ENST00000475954.5:ENST00000496517.5:ENST00000468345.1:ENST00000473669.5:ENST00000486014.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	104	2	3.18264	4.619165000000001	6.05569	0.042233	0.0012512	0.13762	0.0166412
chr1	89883235	89883335	181323	0	+	0.39	(0.36,0.39]	chr1	19585	362	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	5	178	2	2.72362	4.618895	6.51417	0.00795557	0.00592387	0.0578938	0.0506158
chr16	81545881	81545981	6508752	0	+	0.49	(0.485,0.523]	chr16	645911	500	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	3	170	2	2.85513	4.61831	6.38149	0.0231584	3.18797e-4	0.103226	0.00634142
chr14	54606198	54606298	5819835	0	+	0.54	(0.523,0.58]	chr14	569049	377	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	110	2	3.83429	4.618270000000001	5.40225	0.012469	0.00404292	0.0761905	0.0371291
chr12	132531972	132532071	5352935	0	+	0.545455	(0.523,0.58]	chr12	523670	36	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	2	215	2	4.41431	4.618265	4.82222	0.00427917	2.24831e-4	0.042386	0.00491787
chr20	36859873	36859972	7557100	0	-	0.525253	(0.523,0.58]	chr20	789159	1	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9	protein_coding	protein_coding	protein_coding	protein_coding	2	214	2	4.34083	4.6182549999999996	4.89568	0.00492048	1.80282e-4	0.0458505	0.00419938
chr14	70026044	70026144	5872643	0	+	0.46	(0.45,0.485]	chr14	573363	22	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	1	84	2	3.30591	4.618125	5.93034	0.0135996	0.0130794	0.0811697	0.0782396
chr8	22561050	22561150	3771904	0	+	0.68	(0.58,1]	chr8	362929	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SORBS3	ENSG00000120896.14	ENST00000240123.12:ENST00000517500.5:ENST00000517535.5:ENST00000523402.5:ENST00000520563.3:ENST00000524057.3:ENST00000518512.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	75	2	3.75733	4.61786	5.47839	0.0145198	0.0033279	0.0823104	0.0325742
chr1	20906770	20906870	415290	0	-	0.46	(0.45,0.485]	chr1	48596	14	INTRON	INTRON	EIF4G3	ENSG00000075151.24	ENST00000374935.7:ENST00000602326.6:ENST00000685872.1:ENST00000264211.13:ENST00000686579.1:ENST00000688741.1:ENST00000684485.1:ENST00000681717.1:ENST00000681767.1:ENST00000400422.6:ENST00000634879.2:ENST00000693470.1:ENST00000685814.1:ENST00000374933.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.59225	4.6178550000000005	4.64346	0.0850039	0.0259502	0.181766	0.116361
chr17	77353497	77353597	6803894	0	+	0.48	(0.45,0.485]	chr17	686742	293	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.59225	4.6178550000000005	4.64346	0.0850039	0.0259502	0.181766	0.116361
chr5	103259991	103260091	2495392	0	+	0.48	(0.45,0.485]	chr5	248620	2	SS5_PROX	SS5_PROX:INTRON	MACIR	ENSG00000181751.10	ENST00000319933.7:ENST00000515669.5:ENST00000510890.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.59225	4.6178550000000005	4.64346	0.0850039	0.0259502	0.181766	0.116361
chr7	78991011	78991111	3621902	0	-	0.48	(0.45,0.485]	chr7	349212	437	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000440555.2:ENST00000636989.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.59225	4.6178550000000005	4.64346	0.0850039	0.0259502	0.181766	0.116361
chr16	89295682	89295782	6659762	0	-	0.71	(0.58,1]	chr16	666648	35	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	123	2	3.30999	4.617635	5.92528	0.0062948	0.00180937	0.0523832	0.02155
chr1	855349	855449	661	0	+	0.42	(0.419,0.45]	chr1	92	27	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	LINC01128	ENSG00000228794.11	ENST00000445118.7:ENST00000670780.1:ENST00000659124.2:ENST00000688309.1:ENST00000666741.1:ENST00000685764.1:ENST00000657837.1:ENST00000691316.1	lncRNA	lncRNA	lncRNA	lncRNA	1	92	2	3.02039	4.617585	6.21478	0.0276403	0.011428	0.120359	0.0723462
chr3	172128541	172128639	1628357	0	+	0.510204	(0.485,0.523]	chr3	170549	11	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	81	2	3.6472	4.617215	5.58723	0.0203514	0.00579534	0.0979211	0.0472203
chr1	202353538	202353638	317315	0	+	0.43	(0.419,0.45]	chr1	35751	40	INTRON	INTRON	PPP1R12B	ENSG00000077157.22	ENST00000391959.5:ENST00000608999.6:ENST00000480184.5:ENST00000356764.6:ENST00000476364.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	107	2	3.30797	4.617145	5.92632	0.0368429	0.00191339	0.129203	0.0223437
chr6	144347400	144347500	3020484	0	+	0.46	(0.45,0.485]	chr6	295148	27	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1:ENST00000628146.2:ENST00000421035.2	protein_coding	protein_coding	protein_coding	protein_coding	3	301	2	4.2982	4.6171	4.936	0.00174604	3.22079e-4	0.0259124	0.00637349
chr13	113329182	113329282	5753222	0	-	0.51	(0.485,0.523]	chr13	564094	27	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	1	81	2	3.54218	4.61709	5.692	0.0171772	0.00747698	0.0895975	0.0555092
chr2	39108440	39108540	1127238	0	-	0.41	(0.39,0.419]	chr2	123480	101	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	149	2	3.09398	4.617075	6.14017	0.0254364	0.00100955	0.108654	0.0142887
chr3	153164043	153164142	1600393	0	+	0.353535	(0.33,0.36]	chr3	169060	9	UTR3	UTR3:EXON_MRNA	RAP2B	ENSG00000181467.5	ENST00000323534.5	protein_coding	protein_coding	protein_coding	protein_coding	3	322	2	4.02522	4.616944999999999	5.20867	0.00106029	7.88999e-4	0.0195659	0.0120452
chr8	18727500	18727600	3949244	0	-	0.4	(0.39,0.419]	chr8	377204	435	INTRON	INTRON	PSD3	ENSG00000156011.18	ENST00000327040.13:ENST00000440756.4:ENST00000286485.12:ENST00000523619.5:ENST00000518315.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	86	2	3.34529	4.616775	5.88826	0.0169925	0.0137041	0.0889149	0.0814223
chr7	76996232	76996331	3398762	0	+	0.676768	(0.58,1]	chr7	328286	55	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	1	102	2	3.97579	4.61655	5.25731	0.00655968	0.00358178	0.0536645	0.0342681
chr3	146535342	146535442	1937246	0	-	0.42	(0.419,0.45]	chr3	197093	14	INTRON	INTRON	PLSCR1	ENSG00000188313.13	ENST00000342435.9:ENST00000493432.5:ENST00000463777.5:ENST00000487389.5:ENST00000468985.5:ENST00000448787.6:ENST00000488253.5:ENST00000489775.5:ENST00000478267.5:ENST00000462666.5:ENST00000486631.5:ENST00000472349.1:ENST00000494568.5:ENST00000490745.5:ENST00000469266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.47684	4.61587	4.7549	0.0888907	0.0389508	0.183874	0.142578
chr4	150343592	150343692	2343484	0	-	0.42	(0.419,0.45]	chr4	234661	173	INTRON	INTRON	LRBA	ENSG00000198589.14	ENST00000357115.9:ENST00000651943.2:ENST00000510413.5:ENST00000503716.5:ENST00000509835.5:ENST00000648823.1:ENST00000648626.1:ENST00000651695.1:ENST00000648878.1:ENST00000651035.1:ENST00000507224.5:ENST00000649874.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.47684	4.61587	4.7549	0.0888907	0.0389508	0.183874	0.142578
chr6	3402310	3402409	3087514	0	-	0.444444	(0.419,0.45]	chr6	299778	245	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.47684	4.61587	4.7549	0.0888907	0.0389508	0.183874	0.142578
chr7	22993637	22993737	3551374	0	-	0.42	(0.419,0.45]	chr7	343122	21	INTRON	INTRON	FAM126A	ENSG00000122591.13	ENST00000465661.2:ENST00000432176.7:ENST00000440481.6:ENST00000679826.1:ENST00000681402.1:ENST00000681237.1:ENST00000679789.1:ENST00000409923.5:ENST00000681766.1:ENST00000681079.1:ENST00000477349.5:ENST00000409763.1:ENST00000467005.6:ENST00000681468.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.47684	4.61587	4.7549	0.0888907	0.0389508	0.183874	0.142578
chr16	50526841	50526941	6451202	0	+	0.54	(0.523,0.58]	chr16	639837	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000260573	ENSG00000260573.4	ENST00000646992.1	lncRNA	lncRNA	lncRNA	lncRNA	2	111	2	2.85567	4.615835000000001	6.376	0.0136981	0.00529293	0.0814223	0.047841
chr15	25016889	25016987	6064022	0	+	0.377551	(0.36,0.39]	chr15	595414	18	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	1	85	2	3.56005	4.615665	5.67128	0.023302	0.00847528	0.103669	0.0607325
chr3	27373903	27374001	1720661	0	-	0.346939	(0.33,0.36]	chr3	178582	13	UTR3	UTR3:EXON_MRNA	SLC4A7	ENSG00000033867.17	ENST00000425128.6:ENST00000454389.6:ENST00000295736.9:ENST00000428386.5:ENST00000419036.5	protein_coding	protein_coding	protein_coding	protein_coding	1	84	2	3.69138	4.61552	5.53966	0.0251076	0.00591814	0.107672	0.0478563
chr2	235515930	235516030	1062755	0	+	0.64	(0.58,1]	chr2	115651	207	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	82	2	3.03676	4.61548	6.1942	0.0198789	0.00368616	0.100864	0.0389784
chr20	6026338	6026438	7425883	0	+	0.33	(0.29,0.33]	chr20	773620	1	SS5_PROX	SS5_PROX:INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	290	2	4.41552	4.615375	4.81523	0.00392435	6.18082e-5	0.0404963	0.00191733
chr12	122095362	122095462	5343542	0	+	0.46	(0.45,0.485]	chr12	521864	157	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	1	102	2	3.40384	4.61537	5.8269	0.027533	0.00167585	0.112782	0.0203806
chr10	102651569	102651668	4576540	0	+	0.585859	(0.58,1]	chr10	437284	19	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1:ENST00000487927.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	75	2	3.79235	4.614935	5.43752	0.0156166	0.00302484	0.0849828	0.0305643
chr16	81680621	81680720	6510117	0	+	0.555556	(0.523,0.58]	chr16	645979	16	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	1	101	2	3.49363	4.61486	5.73609	0.0224494	0.0017613	0.102751	0.0211077
chr17	48999469	48999569	6750041	0	+	0.46	(0.45,0.485]	chr17	680300	3	SS5_PROX	SS5_PROX:INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000510023.5:ENST00000431824.2:ENST00000515586.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	103	2	2.76944	4.614815	6.46019	0.0716626	3.07362e-4	0.168159	0.00618726
chr15	25406566	25406666	6205676	0	-	0.34	(0.33,0.36]	chr15	610793	1	SS5_PROX	SS5_PROX:INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000630607.2:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000628890.1:ENST00000625681.2:ENST00000626589.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	37	2	4.49572	4.6147	4.73368	0.103264	0.0216127	0.197541	0.105648
chrX	55750102	55750201	7885474	0	+	0.333333	(0.33,0.36]	chrX	827008	182	INTRON	INTRON	RRAGB	ENSG00000083750.13	ENST00000374941.9:ENST00000414239.5:ENST00000262850.7:ENST00000474757.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.49572	4.6147	4.73368	0.103264	0.0216127	0.197541	0.105648
chrX	139896459	139896559	8119597	0	-	0.34	(0.33,0.36]	chrX	845912	643	INTRON	INTRON	ATP11C	ENSG00000101974.15	ENST00000370557.5:ENST00000682941.1:ENST00000485626.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.49572	4.6147	4.73368	0.103264	0.0216127	0.197541	0.105648
chr12	57161916	57162016	5240747	0	+	0.46	(0.45,0.485]	chr12	510238	2	SS3_PROX	SS3_PROX:INTRON	LRP1	ENSG00000123384.14	ENST00000243077.8	protein_coding	protein_coding	protein_coding	protein_coding	1	100	2	3.09257	4.614675	6.13678	0.0447818	7.46272e-4	0.140478	0.0115813
chr5	14783233	14783333	2613451	0	-	0.49	(0.485,0.523]	chr5	260337	137	INTRON	INTRON	ANKH	ENSG00000154122.14	ENST00000284268.8:ENST00000513115.1:ENST00000503389.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	82	2	3.34812	4.614635	5.88115	0.012541	0.0117752	0.0761905	0.0743709
chr16	3772368	3772466	6538838	0	-	0.336735	(0.33,0.36]	chr16	650341	10	INTRON	INTRON	CREBBP	ENSG00000005339.15	ENST00000262367.10:ENST00000382070.7:ENST00000570939.2	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.57035	4.614520000000001	4.65869	0.0945416	0.0248983	0.188571	0.114418
chr3	23825699	23825799	1430989	0	+	0.49	(0.485,0.523]	chr3	152792	138	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	101	2	3.49585	4.61418	5.73251	0.0222996	0.00184599	0.102226	0.0217471
chr7	138550063	138550163	3502909	0	+	0.39	(0.36,0.39]	chr7	337534	109	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	138	2	2.93665	4.613965	6.29128	0.0086512	0.00807851	0.0623824	0.0584656
chr1	17677482	17677581	54986	0	+	0.636364	(0.58,1]	chr1	5603	125	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	142	2	2.40582	4.61343	6.82104	0.0149737	9.78215e-4	0.0851167	0.0187475
chr1	12580966	12581066	402412	0	-	0.39	(0.36,0.39]	chr1	46221	3	SS3_PROX	SS3_PROX:INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	95	2	2.85025	4.613305	6.37636	0.0373341	0.00749622	0.139793	0.0576451
chr3	98741383	98741483	1516300	0	+	0.53	(0.523,0.58]	chr3	161540	74	INTRON	INTRON	ST3GAL6	ENSG00000064225.13	ENST00000489112.5:ENST00000265261.11:ENST00000460774.5:ENST00000469105.5:ENST00000466482.5:ENST00000462152.5:ENST00000486249.5:ENST00000497008.5:ENST00000486334.6:ENST00000394162.5:ENST00000613264.5:ENST00000480133.1:ENST00000465004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	133	2	3.23203	4.61317	5.99431	0.0104033	0.00306158	0.0686837	0.0308391
chr1	27488385	27488485	431235	0	-	0.43	(0.419,0.45]	chr1	50973	591	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.29342	4.613160000000001	4.9329	0.0716557	0.0526662	0.168159	0.167062
chr1	89853953	89854053	181030	0	+	0.42	(0.419,0.45]	chr1	19585	69	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	1	89	2	3.90437	4.613160000000001	5.32195	0.0431627	0.00396391	0.138403	0.0368027
chr16	68319135	68319234	6476833	0	+	0.444444	(0.419,0.45]	chr16	643277	2	INTRON	INTRON	PRMT7	ENSG00000132600.18	ENST00000686904.1:ENST00000562381.7:ENST00000689486.1:ENST00000693200.1:ENST00000685141.1:ENST00000562050.6:ENST00000565745.6:ENST00000685109.1:ENST00000689637.1:ENST00000692867.1:ENST00000693670.1:ENST00000692760.1:ENST00000687654.1:ENST00000441236.3:ENST00000675132.1:ENST00000688470.1:ENST00000691833.1:ENST00000690432.1:ENST00000691804.1:ENST00000691961.1:ENST00000690932.1:ENST00000692632.1:ENST00000687444.1:ENST00000692283.1:ENST00000569571.5:ENST00000692621.1:ENST00000566341.5:ENST00000686053.1:ENST00000692966.1:ENST00000691663.1:ENST00000564050.6:ENST00000449359.7:ENST00000569047.7:ENST00000693309.1:ENST00000690311.1:ENST00000565356.5:ENST00000564441.6:ENST00000563520.5:ENST00000687558.1:ENST00000339507.9:ENST00000688969.1:ENST00000568975.5:ENST00000563562.5:ENST00000561806.5:ENST00000562456.1:ENST00000566430.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.29342	4.613160000000001	4.9329	0.0716557	0.0526662	0.168159	0.167062
chr2	15351891	15351991	1091844	0	-	0.45	(0.419,0.45]	chr2	118942	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.29342	4.613160000000001	4.9329	0.0716557	0.0526662	0.168159	0.167062
chr4	710555	710655	1993733	0	+	0.45	(0.419,0.45]	chr4	203088	42	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.29342	4.613160000000001	4.9329	0.0716557	0.0526662	0.168159	0.167062
chr4	156815316	156815416	2356587	0	-	0.43	(0.419,0.45]	chr4	235512	39	INTRON	INTRON	PDGFC	ENSG00000145431.11	ENST00000502773.6:ENST00000274071.6:ENST00000506880.5:ENST00000422544.2:ENST00000512711.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.29342	4.613160000000001	4.9329	0.0716557	0.0526662	0.168159	0.167062
chr9	113465380	113465480	4224327	0	+	0.44	(0.419,0.45]	chr9	400562	11	INTRON	INTRON	RGS3	ENSG00000138835.23	ENST00000374140.6:ENST00000350696.9:ENST00000695401.1:ENST00000478599.5:ENST00000317613.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.29342	4.613160000000001	4.9329	0.0716557	0.0526662	0.168159	0.167062
chrX	72550340	72550440	8064001	0	-	0.44	(0.419,0.45]	chrX	841411	547	INTRON	INTRON	HDAC8	ENSG00000147099.21	ENST00000373583.6:ENST00000373573.9:ENST00000648452.1:ENST00000649097.1:ENST00000647886.1:ENST00000648855.1:ENST00000647654.1:ENST00000648939.1:ENST00000648504.1:ENST00000648459.1:ENST00000373589.9:ENST00000650604.1:ENST00000647594.1:ENST00000647980.1:ENST00000647859.1:ENST00000648731.1:ENST00000649181.1:ENST00000649274.1:ENST00000650471.1:ENST00000647641.1:ENST00000649543.1:ENST00000373568.7:ENST00000648139.1:ENST00000648834.1:ENST00000648711.1:ENST00000436675.6:ENST00000647606.1:ENST00000415409.6:ENST00000478743.2:ENST00000648298.1:ENST00000648870.1:ENST00000649116.1:ENST00000649752.1:ENST00000647718.1:ENST00000649242.1:ENST00000649518.1:ENST00000648285.1:ENST00000412342.6:ENST00000373571.6:ENST00000439122.7:ENST00000648962.1:ENST00000650126.1:ENST00000648036.1:ENST00000647974.1:ENST00000373560.7:ENST00000373559.8:ENST00000648577.1:ENST00000421523.6:ENST00000648101.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.29342	4.613160000000001	4.9329	0.0716557	0.0526662	0.168159	0.167062
chr2	239291569	239291669	1391624	0	-	0.49	(0.485,0.523]	chr2	148740	400	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	81	2	3.7132	4.61305	5.5129	0.0229047	0.00492265	0.102982	0.0423296
chr6	45354516	45354616	3143480	0	-	0.41	(0.39,0.419]	chr6	306719	312	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5:ENST00000459689.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	138	2	2.93449	4.6122	6.28991	0.00887176	0.00814388	0.0634853	0.0588525
chr13	93276607	93276707	5618278	0	+	0.59	(0.58,1]	chr13	553052	486	INTRON	INTRON	GPC6	ENSG00000183098.11	ENST00000377047.9	protein_coding	protein_coding	protein_coding	protein_coding	3	126	2	3.45493	4.612135	5.76934	0.00849371	0.00117058	0.0617717	0.0157899
chr7	222247	222347	3305877	0	+	0.67	(0.58,1]	chr7	320161	129	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	2	101	2	3.48788	4.61195	5.73602	0.00904546	0.00208277	0.0637469	0.0237357
chr5	132912773	132912873	2762856	0	-	0.39	(0.36,0.39]	chr5	270833	80	INTRON	INTRON	AFF4	ENSG00000072364.13	ENST00000265343.10:ENST00000378595.7:ENST00000425658.1:ENST00000378593.6:ENST00000477369.5:ENST00000491831.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	103	2	3.08309	4.611915	6.14074	0.0485184	0.0010006	0.145074	0.0142243
chr10	95358899	95358998	4733222	0	-	0.424242	(0.419,0.45]	chr10	451905	7	INTRON	INTRON	SORBS1	ENSG00000095637.23	ENST00000371227.8:ENST00000306402.10:ENST00000371249.6:ENST00000371247.7:ENST00000371246.6:ENST00000634504.1:ENST00000607232.5:ENST00000361941.7:ENST00000277982.9:ENST00000371245.7:ENST00000371241.5:ENST00000354106.7:ENST00000371239.5:ENST00000474353.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.08324	4.61187	5.1405	0.0727147	0.0550015	0.199502	0.153337
chr10	97591794	97591893	4563555	0	+	0.434343	(0.419,0.45]	chr10	435352	65	INTRON	INTRON	HOGA1	ENSG00000241935.9	ENST00000465608.1:ENST00000370647.8:ENST00000370646.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	41	2	4.08324	4.61187	5.1405	0.0727147	0.0550015	0.199502	0.153337
chr11	70817864	70817964	5062462	0	-	0.45	(0.419,0.45]	chr11	492713	103	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	41	2	4.08324	4.61187	5.1405	0.0727147	0.0550015	0.199502	0.153337
chr11	65604895	65604993	5051633	0	-	0.591837	(0.58,1]	chr11	491142	48	INTRON	INTRON	MAP3K11	ENSG00000173327.8	ENST00000530153.5:ENST00000532507.5:ENST00000309100.8:ENST00000524848.5:ENST00000534432.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.3962	4.611865	4.82753	0.0427798	0.0250928	0.13762	0.114418
chr11	70683013	70683112	5061109	0	-	0.59596	(0.58,1]	chr11	492688	130	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.3962	4.611865	4.82753	0.0427798	0.0250928	0.13762	0.114418
chr12	132511387	132511481	5352727	0	+	0.670213	(0.58,1]	chr12	523657	11	UTR3	UTR3:EXON_MRNA:INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1:ENST00000542061.2	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.3962	4.611865	4.82753	0.0427798	0.0250928	0.13762	0.114418
chr14	99562238	99562338	6052494	0	-	0.66	(0.58,1]	chr14	593891	258	INTRON	INTRON	CCDC85C	ENSG00000205476.9	ENST00000380243.9:ENST00000554996.5:ENST00000554877.1:ENST00000556348.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.3962	4.611865	4.82753	0.0427798	0.0250928	0.13762	0.114418
chr17	80023302	80023402	6982149	0	-	0.68	(0.58,1]	chr17	713081	93	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.3962	4.611865	4.82753	0.0427798	0.0250928	0.13762	0.114418
chr2	72983704	72983803	1188634	0	-	0.616162	(0.58,1]	chr2	128819	26	INTRON	INTRON	SFXN5	ENSG00000144040.13	ENST00000272433.7:ENST00000461352.5:ENST00000474528.5:ENST00000482289.5:ENST00000411783.5:ENST00000410065.5:ENST00000482542.5:ENST00000463277.5:ENST00000416579.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.3962	4.611865	4.82753	0.0427798	0.0250928	0.13762	0.114418
chr3	134373941	134374041	1920539	0	-	0.68	(0.58,1]	chr3	195375	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	AMOTL2	ENSG00000114019.15	ENST00000249883.10:ENST00000514516.5:ENST00000422605.6:ENST00000513145.1:ENST00000512955.1:ENST00000511759.1:ENST00000506107.1:ENST00000502491.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.3962	4.611865	4.82753	0.0427798	0.0250928	0.13762	0.114418
chr9	134343626	134343726	4260859	0	+	0.68	(0.58,1]	chr9	406311	166	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.3962	4.611865	4.82753	0.0427798	0.0250928	0.13762	0.114418
chr8	17074596	17074695	3761222	0	+	0.424242	(0.419,0.45]	chr8	361224	45	INTRON	INTRON	MICU3	ENSG00000155970.12	ENST00000318063.10:ENST00000522235.5:ENST00000519044.5:ENST00000517398.1:ENST00000517447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	86	2	3.4957	4.61182	5.72794	0.0242188	0.0102234	0.106588	0.0678072
chr6	156999621	156999721	3051688	0	+	0.54	(0.523,0.58]	chr6	297029	141	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	108	2	3.09806	4.61142	6.12478	0.00829271	0.00764666	0.0610772	0.0563517
chr3	50624278	50624378	1470525	0	+	0.47	(0.45,0.485]	chr3	157793	61	INTRON	INTRON	MAPKAPK3	ENSG00000114738.11	ENST00000446044.5:ENST00000430409.5:ENST00000621469.5:ENST00000357955.6:ENST00000457064.1	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	4.01376	4.61141	5.20906	0.0399616	0.0024644	0.133954	0.0265925
chr10	75469912	75470012	4520857	0	+	0.51	(0.485,0.523]	chr10	432249	183	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	1	98	2	3.0179	4.61135	6.2048	0.0479403	5.23665e-4	0.144601	0.0090184
chr3	61812181	61812281	1489123	0	+	0.41	(0.39,0.419]	chr3	160092	409	INTRON	INTRON	PTPRG	ENSG00000144724.20	ENST00000474889.6:ENST00000295874.14	protein_coding	protein_coding	protein_coding	protein_coding	2	116	2	3.3633	4.61116	5.85902	0.0177874	0.00485133	0.0914273	0.0418836
chr5	10739632	10739731	2612433	0	-	0.373737	(0.36,0.39]	chr5	260258	50	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5:ENST00000510546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	85	2	3.65573	4.611135	5.56654	0.0272676	0.0067964	0.112327	0.0524192
chr9	133915163	133915263	4429552	0	-	0.59	(0.58,1]	chr9	423310	534	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	75	2	3.82654	4.611	5.39546	0.0168207	0.00275362	0.0884836	0.0285628
chr11	93530455	93530555	5106925	0	-	0.47	(0.45,0.485]	chr11	496090	72	INTRON	INTRON	SMCO4	ENSG00000166002.7	ENST00000298966.7:ENST00000527149.5:ENST00000526869.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.32491	4.61088	4.89685	0.0614781	0.0418883	0.158506	0.149021
chr16	84578783	84578882	6650562	0	-	0.464646	(0.45,0.485]	chr16	665366	18	INTRON	INTRON	COTL1	ENSG00000103187.8	ENST00000262428.5:ENST00000564057.1:ENST00000561707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.32491	4.61088	4.89685	0.0614781	0.0418883	0.158506	0.149021
chr4	17883719	17883819	2205067	0	-	0.46	(0.45,0.485]	chr4	223018	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS5_PROX:INTRON	LCORL	ENSG00000178177.17	ENST00000635767.2:ENST00000326877.8:ENST00000675131.1:ENST00000675143.1:ENST00000637787.1:ENST00000675605.1:ENST00000510451.5:ENST00000510121.5:ENST00000675927.1:ENST00000382224.5:ENST00000382226.5:ENST00000676061.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.32491	4.61088	4.89685	0.0614781	0.0418883	0.158506	0.149021
chr13	112693643	112693743	5652576	0	+	0.57	(0.523,0.58]	chr13	554894	28	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5	protein_coding	protein_coding	protein_coding	protein_coding	1	81	2	3.78755	4.61083	5.43411	0.026041	0.00401039	0.109673	0.0371192
chr14	104892675	104892775	5926153	0	+	0.63	(0.58,1]	chr14	580000	3	SS3_PROX	SS3_PROX:INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.48503	4.610525	5.73602	0.00904546	0.006811	0.0637469	0.0524379
chr10	75597074	75597173	4522130	0	+	0.353535	(0.33,0.36]	chr10	432257	40	INTRON	INTRON	LRMDA:ENSG00000286715	ENSG00000148655.15:ENSG00000286715.1	ENST00000611255.5:ENST00000670381.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	37	2	4.57958	4.610445	4.64131	0.0867669	0.0288057	0.182221	0.123764
chr3	44476492	44476592	1755924	0	-	0.41	(0.39,0.419]	chr3	180946	178	INTRON	INTRON	ZNF445	ENSG00000185219.18	ENST00000396077.8:ENST00000474600.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.39622	4.610305	4.82439	0.0762206	0.042449	0.174484	0.149195
chr6	36067302	36067401	2904694	0	+	0.40404	(0.39,0.419]	chr6	284907	76	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000622903.4:ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5:ENST00000472333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.39622	4.610305	4.82439	0.0762206	0.042449	0.174484	0.149195
chr17	81826282	81826379	6985927	0	-	0.536082	(0.523,0.58]	chr17	713906	19	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MCRIP1	ENSG00000225663.8	ENST00000455127.7:ENST00000457257.5:ENST00000538396.5:ENST00000572645.5:ENST00000576730.5:ENST00000573478.5:ENST00000576431.5:ENST00000575061.2	protein_coding	protein_coding	protein_coding	protein_coding	1	100	2	3.4477	4.610285	5.77287	0.0242383	0.00160162	0.106588	0.0197827
chrX	9530782	9530882	7843103	0	+	0.33	(0.29,0.33]	chrX	822404	286	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	1	81	2	3.48839	4.610265	5.73214	0.0146933	0.00869049	0.0826843	0.0612699
chr6	63658869	63658969	2934494	0	+	0.44	(0.419,0.45]	chr6	288800	117	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	145	2	2.77087	4.610195	6.44952	0.044455	5.09118e-4	0.140478	0.00884498
chrX	48805872	48805971	7879246	0	+	0.414141	(0.39,0.419]	chrX	826185	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HDAC6	ENSG00000094631.21	ENST00000376643.6:ENST00000469223.5:ENST00000376610.6:ENST00000483656.5:ENST00000462730.5:ENST00000376619.6:ENST00000477528.5:ENST00000334136.11:ENST00000476625.5:ENST00000646703.1:ENST00000477561.5:ENST00000643659.1:ENST00000643374.1:ENST00000644068.1:ENST00000643934.1:ENST00000443563.5:ENST00000440653.1:ENST00000468949.1:ENST00000647398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	92	2	2.95235	4.61009	6.26783	0.0307567	0.00920367	0.12741	0.0644228
chr10	132572742	132572842	4617188	0	+	0.57	(0.523,0.58]	chr10	441139	342	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.43597	4.6099049999999995	4.78384	0.0663135	0.0313935	0.162385	0.127822
chr14	23512135	23512222	5757069	0	+	0.551724	(0.523,0.58]	chr14	564951	3	SS5_PROX	SS5_PROX:INTRON	ZFHX2-AS1	ENSG00000157306.14	ENST00000556354.5	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.43597	4.6099049999999995	4.78384	0.0663135	0.0313935	0.162385	0.127822
chr15	31336349	31336449	6072945	0	+	0.58	(0.523,0.58]	chr15	596672	82	INTRON	INTRON	KLF13	ENSG00000169926.11	ENST00000307145.4:ENST00000558921.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.43597	4.6099049999999995	4.78384	0.0663135	0.0313935	0.162385	0.127822
chr16	67601441	67601540	6472467	0	+	0.525253	(0.523,0.58]	chr16	642672	285	INTRON	INTRON	CTCF	ENSG00000102974.16	ENST00000646076.1:ENST00000644852.1:ENST00000264010.10:ENST00000401394.6:ENST00000646771.1:ENST00000642847.1:ENST00000644753.1:ENST00000642819.1:ENST00000645306.1:ENST00000643892.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.43597	4.6099049999999995	4.78384	0.0663135	0.0313935	0.162385	0.127822
chr19	19421116	19421216	7226892	0	+	0.58	(0.523,0.58]	chr19	739810	147	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.43597	4.6099049999999995	4.78384	0.0663135	0.0313935	0.162385	0.127822
chr22	50236914	50237013	7827230	0	-	0.545455	(0.523,0.58]	chr22	821200	30	INTRON	INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.43597	4.6099049999999995	4.78384	0.0663135	0.0313935	0.162385	0.127822
chr22	50237013	50237113	7827231	0	-	0.56	(0.523,0.58]	chr22	821200	31	INTRON	INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.43597	4.6099049999999995	4.78384	0.0663135	0.0313935	0.162385	0.127822
chr7	64890150	64890249	3376305	0	+	0.525253	(0.523,0.58]	chr7	325874	4	INTRON	INTRON	ZNF273	ENSG00000198039.12	ENST00000527278.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	37	2	4.43597	4.6099049999999995	4.78384	0.0663135	0.0313935	0.162385	0.127822
chrX	72713702	72713802	8065632	0	-	0.56	(0.523,0.58]	chrX	841638	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PHKA1	ENSG00000067177.15	ENST00000373545.7:ENST00000373542.9:ENST00000339490.7:ENST00000541944.5:ENST00000373539.3	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.43597	4.6099049999999995	4.78384	0.0663135	0.0313935	0.162385	0.127822
chr12	113941629	113941726	5510296	0	-	0.484536	(0.45,0.485]	chr12	542512	11	INTRON	INTRON	RBM19	ENSG00000122965.11	ENST00000545145.6:ENST00000392561.7:ENST00000261741.10	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.50852	4.6098099999999995	4.7111	0.0781398	0.0302873	0.175203	0.126768
chr16	4000588	4000687	6540633	0	-	0.484848	(0.45,0.485]	chr16	650503	67	INTRON	INTRON	ADCY9	ENSG00000162104.10	ENST00000294016.8:ENST00000575550.5:ENST00000571467.1:ENST00000571889.1:ENST00000572288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.50852	4.6098099999999995	4.7111	0.0781398	0.0302873	0.175203	0.126768
chr17	47132874	47132973	6921764	0	-	0.484848	(0.45,0.485]	chr17	704872	1	INTRON	INTRON	CDC27	ENSG00000004897.12	ENST00000066544.8:ENST00000531206.5:ENST00000533415.5:ENST00000571643.5:ENST00000527547.5:ENST00000526866.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.50852	4.6098099999999995	4.7111	0.0781398	0.0302873	0.175203	0.126768
chr20	8251040	8251140	7427772	0	+	0.47	(0.45,0.485]	chr20	773682	14	INTRON	INTRON	PLCB1:PLCB1-IT1	ENSG00000182621.18:ENSG00000225479.1	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1:ENST00000451443.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA	0	37	2	4.50852	4.6098099999999995	4.7111	0.0781398	0.0302873	0.175203	0.126768
chr3	188265252	188265352	1652911	0	+	0.47	(0.45,0.485]	chr3	173754	247	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.50852	4.6098099999999995	4.7111	0.0781398	0.0302873	0.175203	0.126768
chr4	102551320	102551419	2093533	0	+	0.484848	(0.45,0.485]	chr4	213388	130	INTRON	INTRON	NFKB1	ENSG00000109320.13	ENST00000394820.8:ENST00000226574.9:ENST00000652619.1:ENST00000507079.5:ENST00000505458.5:ENST00000509165.1:ENST00000652569.1:ENST00000513803.5:ENST00000502367.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	82	2	3.60494	4.609624999999999	5.61431	0.0217589	0.00682726	0.100615	0.0525149
chr14	54790036	54790136	5821697	0	+	0.44	(0.419,0.45]	chr14	569165	12	UTR3	UTR3:EXON_MRNA	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9	protein_coding	protein_coding	protein_coding	protein_coding	2	126	2	2.50478	4.60952	6.71426	0.0340831	0.0050028	0.134158	0.0463896
chr20	33669052	33669142	7546117	0	-	0.466667	(0.45,0.485]	chr20	787651	3	SS5_PROX	SS5_PROX:INTRON	NECAB3	ENSG00000125967.17	ENST00000375238.8:ENST00000246190.11:ENST00000488489.5:ENST00000485399.5:ENST00000494174.5:ENST00000606690.5:ENST00000439478.5:ENST00000607805.5:ENST00000493590.1:ENST00000606699.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	113	2	2.83043	4.6094550000000005	6.38848	0.0153861	0.0059625	0.0869771	0.0506812
chr3	188240562	188240662	1652664	0	+	0.31	(0.29,0.33]	chr3	173753	4	SS5_PROX	SS5_PROX:INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	2	134	2	2.4498	4.609295	6.76879	0.0595935	1.12201e-4	0.157889	0.00298349
chr2	3297996	3298095	1081087	0	-	0.50505	(0.485,0.523]	chr2	117633	153	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	81	2	3.4289	4.609285	5.78967	0.0146211	0.00977282	0.0826064	0.0664239
chr13	33872817	33872917	5567177	0	+	0.32	(0.29,0.33]	chr13	549341	221	INTRON	INTRON	RFC3	ENSG00000133119.13	ENST00000434425.5:ENST00000616236.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.42727	4.60913	4.79099	0.061706	0.0335282	0.158854	0.133139
chr17	78718621	78718721	6978676	0	-	0.36	(0.33,0.36]	chr17	712611	17	INTRON	INTRON	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000589297.5:ENST00000591574.5:ENST00000590775.5:ENST00000589768.5:ENST00000586043.5:ENST00000587308.5:ENST00000590300.1:ENST00000591095.1:ENST00000592497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.211	4.60871	5.00642	0.0542065	0.0541541	0.167824	0.151733
chr17	50461686	50461786	6752056	0	+	0.64	(0.58,1]	chr17	680705	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ACSF2	ENSG00000167107.13	ENST00000510410.5:ENST00000300441.9:ENST00000504392.5:ENST00000506582.5:ENST00000427954.6:ENST00000502667.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	89	2	3.06331	4.608535	6.15376	0.036259	2.90409e-4	0.127941	0.0059241
chr22	38202702	38202795	7724318	0	+	0.709677	(0.58,1]	chr22	809111	6	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MAFF	ENSG00000185022.12	ENST00000624676.1:ENST00000538999.1:ENST00000538320.5:ENST00000338483.7:ENST00000441709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	91	2	3.5406	4.60851	5.67642	0.0154024	0.00117039	0.0849828	0.0157899
chr1	193163190	193163290	309364	0	+	0.52	(0.485,0.523]	chr1	34997	16	INTRON	INTRON	CDC73	ENSG00000134371.14	ENST00000649895.1:ENST00000643006.1:ENST00000367435.5:ENST00000650197.1:ENST00000648071.1:ENST00000635846.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.43249	4.608375	4.78426	0.0660335	0.0322299	0.162385	0.12988
chr1	236844868	236844968	366314	0	+	0.5	(0.485,0.523]	chr1	41482	59	INTRON	INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1:ENST00000681937.1:ENST00000366576.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.43249	4.608375	4.78426	0.0660335	0.0322299	0.162385	0.12988
chr13	111185625	111185725	5651304	0	+	0.52	(0.485,0.523]	chr13	554737	4	SS5_PROX	SS5_PROX:INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000449979.5:ENST00000491775.5:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8:ENST00000467053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.43249	4.608375	4.78426	0.0660335	0.0322299	0.162385	0.12988
chr3	171732445	171732545	1957772	0	-	0.52	(0.485,0.523]	chr3	199043	60	INTRON	INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9:ENST00000498278.5:ENST00000475273.6:ENST00000440204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.43249	4.608375	4.78426	0.0660335	0.0322299	0.162385	0.12988
chr4	186693876	186693976	2374883	0	-	0.5	(0.485,0.523]	chr4	237245	299	INTRON	INTRON	FAT1	ENSG00000083857.15	ENST00000441802.7	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.43249	4.608375	4.78426	0.0660335	0.0322299	0.162385	0.12988
chr8	646905	647004	3932190	0	-	0.515152	(0.485,0.523]	chr8	376017	58	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.43249	4.608375	4.78426	0.0660335	0.0322299	0.162385	0.12988
chr16	50622307	50622406	6452152	0	+	0.616162	(0.58,1]	chr16	639918	2	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	3	249	2	4.36566	4.607950000000001	4.85024	0.00100106	1.35405e-4	0.0190404	0.00342378
chr14	31167697	31167797	5952733	0	-	0.37	(0.36,0.39]	chr14	583296	100	INTRON	INTRON	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000691390.1:ENST00000553957.6:ENST00000687002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	85	2	3.38495	4.6077449999999995	5.83054	0.0182399	0.0125396	0.0921579	0.0765784
chr3	9759384	9759482	1403623	0	+	0.612245	(0.58,1]	chr3	150411	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	OGG1	ENSG00000114026.22	ENST00000302036.11:ENST00000349503.9:ENST00000449570.6:ENST00000302008.12:ENST00000383826.9:ENST00000426518.5:ENST00000352937.5:ENST00000602976.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	76	2	3.35051	4.60771	5.86491	0.00953058	0.00707578	0.0650078	0.0558168
chr5	1056181	1056281	2608382	0	-	0.65	(0.58,1]	chr5	259539	2	SS5_PROX	SS5_PROX:INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10:ENST00000634447.1	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	3.35051	4.60771	5.86491	0.00953058	0.00707578	0.0650078	0.0558168
chr8	725662	725762	3932987	0	-	0.65	(0.58,1]	chr8	376060	93	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	76	2	3.35051	4.60771	5.86491	0.00953058	0.00707578	0.0650078	0.0558168
chr11	70740485	70740585	5061686	0	-	0.55	(0.523,0.58]	chr11	492701	226	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	114	2	2.68048	4.607559999999999	6.53464	0.020416	0.00395533	0.102668	0.0406092
chr10	46806807	46806907	4484751	0	+	0.49	(0.485,0.523]	chr10	428921	45	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000688259.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	108	2	3.14062	4.607525000000001	6.07443	0.00899749	0.00698603	0.0637469	0.0534814
chr3	188265652	188265752	1652915	0	+	0.44	(0.419,0.45]	chr3	173754	251	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	2	116	2	3.22297	4.607385	5.9918	0.0162379	0.00712864	0.0873195	0.0541241
chr10	1095769	1095869	4438031	0	+	0.42	(0.419,0.45]	chr10	424784	2	SS3_PROX	SS3_PROX:INTRON	WDR37	ENSG00000047056.17	ENST00000358220.5:ENST00000263150.9:ENST00000381329.5:ENST00000650072.1:ENST00000436154.1	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	3.27753	4.60736	5.93719	0.0176643	0.0163857	0.0910838	0.0909046
chr7	217757	217857	3305832	0	+	0.65	(0.58,1]	chr7	320161	84	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	2	100	2	3.07041	4.60734	6.14427	0.00661304	0.00407804	0.0512951	0.0413652
chr7	6701700	6701799	3542730	0	-	0.545455	(0.523,0.58]	chr7	342318	9	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	3	284	2	4.48979	4.607225	4.72466	0.00234551	1.53615e-4	0.0305046	0.00374659
chr1	61101874	61101974	146296	0	+	0.33	(0.29,0.33]	chr1	17139	133	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	87	2	4.13733	4.607045	5.07676	0.0412683	0.00169244	0.136301	0.0204799
chr1	29240907	29241007	78417	0	+	0.64	(0.58,1]	chr1	8914	38	INTRON	INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.54927	4.6067149999999994	4.66416	0.0643046	0.0144381	0.161669	0.0833845
chr1	228144412	228144497	358028	0	+	0.647059	(0.58,1]	chr1	40402	2	UTR5	UTR5:EXON_MRNA:INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5:ENST00000366718.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.54927	4.6067149999999994	4.66416	0.0643046	0.0144381	0.161669	0.0833845
chr16	1729578	1729678	6371233	0	+	0.75	(0.58,1]	chr16	628845	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.54927	4.6067149999999994	4.66416	0.0643046	0.0144381	0.161669	0.0833845
chr17	17567789	17567888	6865351	0	-	0.585859	(0.58,1]	chr17	695822	21	INTRON	INTRON	PEMT	ENSG00000133027.18	ENST00000255389.10:ENST00000435340.6:ENST00000395783.5:ENST00000395782.5:ENST00000395781.6:ENST00000580147.5:ENST00000421096.5:ENST00000472446.1:ENST00000461404.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.54927	4.6067149999999994	4.66416	0.0643046	0.0144381	0.161669	0.0833845
chr17	77434660	77434760	6804719	0	+	0.59	(0.58,1]	chr17	686787	71	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.54927	4.6067149999999994	4.66416	0.0643046	0.0144381	0.161669	0.0833845
chr19	7907762	7907861	7199681	0	+	0.616162	(0.58,1]	chr19	734084	8	INTRON	INTRON	MAP2K7	ENSG00000076984.18	ENST00000397981.7:ENST00000397979.4:ENST00000468058.1:ENST00000397983.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.54927	4.6067149999999994	4.66416	0.0643046	0.0144381	0.161669	0.0833845
chr2	3288814	3288914	1080995	0	-	0.63	(0.58,1]	chr2	117633	61	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.54927	4.6067149999999994	4.66416	0.0643046	0.0144381	0.161669	0.0833845
chr22	46647525	46647624	7744653	0	+	0.59596	(0.58,1]	chr22	812052	92	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.54927	4.6067149999999994	4.66416	0.0643046	0.0144381	0.161669	0.0833845
chr7	207602	207702	3305730	0	+	0.65	(0.58,1]	chr7	320155	102	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6:ENST00000477004.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.54927	4.6067149999999994	4.66416	0.0643046	0.0144381	0.161669	0.0833845
chr8	23250973	23251072	3773202	0	+	0.626263	(0.58,1]	chr8	363316	12	INTRON	INTRON	CHMP7	ENSG00000147457.14	ENST00000397677.6:ENST00000313219.8:ENST00000519414.5:ENST00000517325.5:ENST00000519529.1:ENST00000519984.1:ENST00000519503.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.54927	4.6067149999999994	4.66416	0.0643046	0.0144381	0.161669	0.0833845
chr8	108248512	108248612	4039208	0	-	0.64	(0.58,1]	chr8	385565	52	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000677746.1:ENST00000677447.1:ENST00000676548.1:ENST00000676487.1:ENST00000521440.6:ENST00000518442.5:ENST00000522887.1:ENST00000518634.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.54927	4.6067149999999994	4.66416	0.0643046	0.0144381	0.161669	0.0833845
chr9	134363287	134363387	4261056	0	+	0.7	(0.58,1]	chr9	406311	363	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.54927	4.6067149999999994	4.66416	0.0643046	0.0144381	0.161669	0.0833845
chr12	116120510	116120610	5512388	0	-	0.38	(0.36,0.39]	chr12	542773	86	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	1	103	2	3.21593	4.6065000000000005	5.99707	0.0398531	0.00143949	0.133954	0.0183435
chr8	86416133	86416232	3853858	0	+	0.434343	(0.419,0.45]	chr8	369757	39	INTRON	INTRON	WWP1	ENSG00000123124.14	ENST00000517970.6:ENST00000265428.4:ENST00000518683.5:ENST00000520374.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	86	2	3.65526	4.606325	5.55739	0.0310506	0.00712959	0.119758	0.0541241
chr16	69822493	69822593	6486070	0	+	0.51	(0.485,0.523]	chr16	644128	228	INTRON	INTRON	WWP2	ENSG00000198373.13	ENST00000569620.5:ENST00000359154.7:ENST00000569174.5:ENST00000544162.5:ENST00000567986.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	83	2	3.21778	4.60626	5.99474	0.0157761	0.0103305	0.0884237	0.0684871
chr8	502589	502689	3931430	0	-	0.56	(0.523,0.58]	chr8	375980	76	INTRON	INTRON	TDRP	ENSG00000180190.13	ENST00000523656.5:ENST00000324079.11	protein_coding	protein_coding	protein_coding	protein_coding	1	82	2	3.27377	4.606205	5.93864	0.0137592	0.0114442	0.0814923	0.0723462
chr12	56597837	56597934	5437631	0	-	0.505155	(0.485,0.523]	chr12	534676	24	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	4	397	2	4.52725	4.60619	4.68513	0.00142278	8.71374e-5	0.0230782	0.00246952
chr2	216026695	216026795	1369551	0	-	0.35	(0.33,0.36]	chr2	145850	132	INTRON	INTRON	MREG:PECR	ENSG00000118242.16:ENSG00000115425.14	ENST00000439791.5:ENST00000424992.5:ENST00000420348.1:ENST00000442122.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	40	2	4.102	4.60606	5.11012	0.0642879	0.04702	0.184676	0.143232
chr12	132954845	132954945	5542080	0	-	0.45	(0.419,0.45]	chr12	547064	62	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	106	2	2.85295	4.60596	6.35897	0.0703179	6.44911e-4	0.168159	0.0104285
chr17	77483131	77483231	6805213	0	+	0.63	(0.58,1]	chr17	686820	9	EXON_MRNA	EXON_MRNA:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	75	2	3.44157	4.605455	5.76934	0.00849371	0.00760198	0.0617717	0.0561937
chr1	91013950	91014050	525648	0	-	0.31	(0.29,0.33]	chr1	61801	312	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	109	2	3.32244	4.605225	5.88801	0.0112593	0.00452552	0.0720977	0.0400651
chr1	248854797	248854879	709842	0	-	0.512195	(0.485,0.523]	chr1	83013	4	INTRON	INTRON	ZNF692	ENSG00000171163.16	ENST00000463519.5:ENST00000306601.9:ENST00000366471.7:ENST00000533927.5:ENST00000476503.5:ENST00000477070.6:ENST00000412341.6:ENST00000482023.5:ENST00000451251.5:ENST00000470787.6:ENST00000474351.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	98	2	3.30265	4.605169999999999	5.90769	0.0306642	0.0011708	0.119264	0.0157899
chr22	32627407	32627507	7790932	0	-	0.54	(0.523,0.58]	chr22	817438	303	INTRON	INTRON	SYN3	ENSG00000185666.15	ENST00000358763.7	protein_coding	protein_coding	protein_coding	protein_coding	2	117	2	3.77551	4.6048100000000005	5.43411	0.026041	0.00126726	0.109673	0.0168021
chr1	33034118	33034217	440115	0	-	0.363636	(0.36,0.39]	chr1	52532	24	UTR3	UTR3:EXON_MRNA:INTRON	AK2	ENSG00000004455.18	ENST00000373449.7:ENST00000672715.1:ENST00000550338.6:ENST00000695599.1:ENST00000354858.11:ENST00000695600.1:ENST00000695601.1:ENST00000491241.2:ENST00000695602.1:ENST00000469238.2:ENST00000695603.1:ENST00000695604.1:ENST00000672308.1:ENST00000548033.5:ENST00000467905.5:ENST00000480134.5:ENST00000695605.1:ENST00000673291.1:ENST00000487289.1:ENST00000548559.1:ENST00000551979.1:ENST00000695606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.56076	4.60455	4.64834	0.103289	0.0272056	0.197541	0.119337
chr16	8839616	8839716	6382790	0	+	0.39	(0.36,0.39]	chr16	631333	105	INTRON	INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000683435.1:ENST00000683094.1:ENST00000566604.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000567697.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.56076	4.60455	4.64834	0.103289	0.0272056	0.197541	0.119337
chr8	93798925	93799021	3863063	0	+	0.385417	(0.36,0.39]	chr8	370620	11	INTRON	INTRON	TMEM67	ENSG00000164953.17	ENST00000684064.1:ENST00000682804.1:ENST00000684416.1:ENST00000682984.1:ENST00000684149.1:ENST00000453321.8:ENST00000682624.1:ENST00000683249.1:ENST00000682036.1:ENST00000683362.1:ENST00000453906.6:ENST00000474944.5:ENST00000409623.8:ENST00000520680.2:ENST00000323130.8:ENST00000682935.1:ENST00000684540.1:ENST00000682837.1:ENST00000682577.1:ENST00000684023.1:ENST00000683336.1:ENST00000683953.1:ENST00000683919.1:ENST00000683078.1:ENST00000681998.1:ENST00000683223.1:ENST00000682700.1:ENST00000521517.6:ENST00000452276.6:ENST00000684089.1:ENST00000683850.1:ENST00000683238.1:ENST00000682744.1:ENST00000519845.5:ENST00000684343.1:ENST00000518896.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.56076	4.60455	4.64834	0.103289	0.0272056	0.197541	0.119337
chr20	3805734	3805831	7421611	0	+	0.57732000000000006	(0.523,0.58]	chr20	773159	9	UTR3	UTR3:EXON_MRNA	CDC25B	ENSG00000101224.18	ENST00000344256.10:ENST00000379598.9:ENST00000439880.6:ENST00000245960.10	protein_coding	protein_coding	protein_coding	protein_coding	1	84	2	3.13506	4.6045300000000005	6.074	0.0186841	0.00906277	0.0976296	0.0637469
chr18	77119124	77119223	7181512	0	-	0.656566	(0.58,1]	chr18	730186	135	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1:ENST00000583798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	99	2	3.89863	4.604495	5.31036	0.00766639	0.00312721	0.0583292	0.0311915
chr12	116789898	116789998	5335358	0	+	0.53	(0.523,0.58]	chr12	520777	78	INTRON	INTRON	RNFT2	ENSG00000135119.15	ENST00000407967.7:ENST00000392549.7:ENST00000257575.9:ENST00000547718.5:ENST00000677328.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	80	2	3.65844	4.60428	5.55012	0.0217068	0.00554418	0.100615	0.0456911
chr4	87138172	87138271	2081151	0	+	0.383838	(0.36,0.39]	chr4	212308	26	UTR3	UTR3:EXON_MRNA	AFF1	ENSG00000172493.23	ENST00000395146.9:ENST00000544085.6:ENST00000307808.10	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	3.71617	4.604205	5.49224	0.0304242	0.00589796	0.11845	0.0477093
chr20	13390069	13390165	7525452	0	-	0.458333	(0.45,0.485]	chr20	785575	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TASP1	ENSG00000089123.16	ENST00000480436.5:ENST00000337743.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	84	2	3.90828	4.604005	5.29973	0.035042	0.00323103	0.12704	0.0319521
chr5	66065885	66065985	2438776	0	+	0.29	[0,0.29]	chr5	242864	104	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5:ENST00000508515.1:ENST00000511671.5:ENST00000503913.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.45163	4.603949999999999	4.75627	0.050276	0.0278965	0.148161	0.12105
chr13	113614341	113614440	5659144	0	+	0.636364	(0.58,1]	chr13	555781	29	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	255	2	3.56178	4.60387	5.64596	0.00626219	8.22868e-6	0.0523832	4.47628e-4
chr10	103838115	103838215	4758486	0	-	0.47	(0.45,0.485]	chr10	454819	364	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	1	83	2	3.30591	4.60379	5.90167	0.0137135	0.0135996	0.0811697	0.0799457
chr8	127175460	127175560	4066742	0	-	0.33	(0.29,0.33]	chr8	387403	7	INTRON	INTRON	CASC19	ENSG00000254166.3	ENST00000642100.1:ENST00000641912.1:ENST00000641421.1:ENST00000641701.1:ENST00000641991.1:ENST00000641588.1:ENST00000642088.1:ENST00000641425.1:ENST00000641706.1:ENST00000641496.1:ENST00000641013.1:ENST00000641262.1:ENST00000641174.1:ENST00000642102.1:ENST00000641615.1:ENST00000641487.1:ENST00000641321.1:ENST00000641719.1:ENST00000642010.1:ENST00000641578.1:ENST00000641510.1:ENST00000641604.1:ENST00000641056.1:ENST00000641642.1:ENST00000641362.1:ENST00000641365.1:ENST00000642077.1:ENST00000641179.1:ENST00000642126.1:ENST00000641411.1:ENST00000641357.1:ENST00000641746.2:ENST00000641073.1:ENST00000641298.1:ENST00000641001.1:ENST00000641674.2:ENST00000641828.1:ENST00000641029.1:ENST00000641547.1:ENST00000642134.1:ENST00000641696.1:ENST00000641480.1:ENST00000641187.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	97	2	2.95538	4.603755	6.25213	0.0510239	4.92548e-4	0.148503	0.00865377
chr16	69600422	69600522	6484380	0	+	0.4	(0.39,0.419]	chr16	643987	315	INTRON	INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.55943	4.60361	4.64779	0.104562	0.0273358	0.19835	0.119337
chr2	101821627	101821727	861875	0	+	0.4	(0.39,0.419]	chr2	97540	216	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5:ENST00000627726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.55943	4.60361	4.64779	0.104562	0.0273358	0.19835	0.119337
chr5	59756449	59756549	2671703	0	-	0.4	(0.39,0.419]	chr5	264360	1701	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000507116.5:ENST00000502484.6:ENST00000309641.10:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.55943	4.60361	4.64779	0.104562	0.0273358	0.19835	0.119337
chr11	2699194	2699294	4972303	0	-	0.68	(0.58,1]	chr11	481197	910	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	2	99	2	3.22338	4.6033	5.98322	0.00562007	0.00438486	0.0493906	0.0393407
chr10	75709557	75709657	4523259	0	+	0.46	(0.45,0.485]	chr10	432271	616	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	164	2	3.27615	4.603245	5.93034	0.0130794	0.00207365	0.0782396	0.0236478
chr10	79069869	79069969	4532053	0	+	0.66	(0.58,1]	chr10	432420	2	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	2.84993	4.603195	6.35646	0.0297842	0.00264106	0.126591	0.0325876
chr2	3237121	3237221	1080472	0	-	0.4	(0.39,0.419]	chr2	117609	225	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000482570.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	85	2	3.71423	4.602555	5.49088	0.0309972	0.00594315	0.119758	0.0479866
chr12	109161694	109161793	5322016	0	+	0.343434	(0.33,0.36]	chr12	518496	64	INTRON	INTRON	ACACB	ENSG00000076555.16	ENST00000338432.12:ENST00000377848.7:ENST00000377854.9:ENST00000546328.1:ENST00000544726.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.49588	4.60241	4.70894	0.0798152	0.033477	0.176933	0.133139
chr22	17967522	17967622	7759249	0	-	0.35	(0.33,0.36]	chr22	813226	603	INTRON	INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000495076.5:ENST00000424046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.49588	4.60241	4.70894	0.0798152	0.033477	0.176933	0.133139
chr6	8099765	8099865	3092254	0	-	0.36	(0.33,0.36]	chr6	300270	19	INTRON	INTRON	EEF1E1	ENSG00000124802.12	ENST00000429723.6:ENST00000502429.5:ENST00000379715.10:ENST00000507463.1:ENST00000488226.2	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.49588	4.60241	4.70894	0.0798152	0.033477	0.176933	0.133139
chr6	34590067	34590166	3124206	0	-	0.343434	(0.33,0.36]	chr6	304700	29	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.49588	4.60241	4.70894	0.0798152	0.033477	0.176933	0.133139
chr10	48041630	48041729	4680782	0	-	0.555556	(0.523,0.58]	chr10	446508	22	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	1	98	2	2.918	4.602395	6.28679	0.0558053	3.97355e-4	0.154188	0.00741985
chr10	79107226	79107326	4532427	0	+	0.45	(0.419,0.45]	chr10	432420	376	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.38804	4.602375	4.81671	0.08258	0.0451818	0.179396	0.154539
chr10	102650076	102650176	4576525	0	+	0.45	(0.419,0.45]	chr10	437284	4	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1:ENST00000487927.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.38804	4.602375	4.81671	0.08258	0.0451818	0.179396	0.154539
chr12	46628895	46628995	5219483	0	+	0.45	(0.419,0.45]	chr12	506666	571	INTRON	INTRON	ENSG00000257261:ENSG00000272369	ENSG00000257261.7:ENSG00000272369.1	ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2:ENST00000607353.1	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.38804	4.602375	4.81671	0.08258	0.0451818	0.179396	0.154539
chr2	158558605	158558705	935973	0	+	0.44	(0.419,0.45]	chr2	103384	95	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.38804	4.602375	4.81671	0.08258	0.0451818	0.179396	0.154539
chr2	239285674	239285774	1391565	0	-	0.45	(0.419,0.45]	chr2	148740	341	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.38804	4.602375	4.81671	0.08258	0.0451818	0.179396	0.154539
chr21	37192413	37192513	7618666	0	+	0.43	(0.419,0.45]	chr21	795954	2	SS5_PROX	SS5_PROX:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000450533.6:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000411496.2:ENST00000399017.6:ENST00000354749.6:ENST00000479930.5:ENST00000476784.5:ENST00000428693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.38804	4.602375	4.81671	0.08258	0.0451818	0.179396	0.154539
chr1	6348152	6348252	389037	0	-	0.6	(0.58,1]	chr1	44647	82	INTRON	INTRON	ACOT7	ENSG00000097021.20	ENST00000608083.5:ENST00000361521.9:ENST00000545482.5:ENST00000377860.8:ENST00000418124.5:ENST00000377855.6:ENST00000377845.7:ENST00000377842.7:ENST00000473466.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.58025	4.60214	4.62403	0.0578275	0.0172566	0.154343	0.0923809
chr11	70536330	70536430	5059636	0	-	0.59	(0.58,1]	chr11	492663	330	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.58025	4.60214	4.62403	0.0578275	0.0172566	0.154343	0.0923809
chr11	72772151	72772251	5070663	0	-	0.65	(0.58,1]	chr11	493498	124	INTRON	INTRON	ARAP1:STARD10	ENSG00000186635.15:ENSG00000214530.10	ENST00000359373.9:ENST00000334805.11:ENST00000543304.5:ENST00000538536.5:ENST00000538437.5:ENST00000545082.5:ENST00000537947.5:ENST00000542989.5:ENST00000546314.5:ENST00000535267.1:ENST00000539138.1:ENST00000535054.1:ENST00000536290.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.58025	4.60214	4.62403	0.0578275	0.0172566	0.154343	0.0923809
chr15	90035325	90035425	6183898	0	+	0.61	(0.58,1]	chr15	608320	281	INTRON	INTRON	ZNF710	ENSG00000140548.10	ENST00000268154.9:ENST00000559419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.58025	4.60214	4.62403	0.0578275	0.0172566	0.154343	0.0923809
chr16	961850	961949	6531654	0	-	0.59596	(0.58,1]	chr16	648714	68	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1:ENST00000566609.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.58025	4.60214	4.62403	0.0578275	0.0172566	0.154343	0.0923809
chr17	80560676	80560776	6809059	0	+	0.66	(0.58,1]	chr17	687806	145	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.58025	4.60214	4.62403	0.0578275	0.0172566	0.154343	0.0923809
chr18	48939791	48939890	7157903	0	-	0.616162	(0.58,1]	chr18	727804	62	INTRON	INTRON	SMAD7	ENSG00000101665.10	ENST00000262158.8:ENST00000545051.2:ENST00000591805.5:ENST00000589634.1:ENST00000585986.1:ENST00000586093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.58025	4.60214	4.62403	0.0578275	0.0172566	0.154343	0.0923809
chr18	76405478	76405578	7179174	0	-	0.67	(0.58,1]	chr18	730080	248	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.58025	4.60214	4.62403	0.0578275	0.0172566	0.154343	0.0923809
chr19	45046465	45046564	7270072	0	+	0.59596	(0.58,1]	chr19	746627	58	INTRON	INTRON	CLASRP	ENSG00000104859.15	ENST00000221455.8:ENST00000391953.8:ENST00000591410.5:ENST00000592056.5:ENST00000391952.7:ENST00000588936.5:ENST00000544944.6:ENST00000587112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.58025	4.60214	4.62403	0.0578275	0.0172566	0.154343	0.0923809
chr21	45449627	45449727	7630759	0	+	0.61	(0.58,1]	chr21	797656	438	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.58025	4.60214	4.62403	0.0578275	0.0172566	0.154343	0.0923809
chr21	45498557	45498656	7631290	0	+	0.626263	(0.58,1]	chr21	797812	5	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.58025	4.60214	4.62403	0.0578275	0.0172566	0.154343	0.0923809
chr7	215861	215961	3305813	0	+	0.65	(0.58,1]	chr7	320161	65	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.58025	4.60214	4.62403	0.0578275	0.0172566	0.154343	0.0923809
chr9	134060783	134060883	4430660	0	-	0.65	(0.58,1]	chr9	423412	49	INTRON	INTRON	BRD3	ENSG00000169925.17	ENST00000303407.12:ENST00000371834.6	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.58025	4.60214	4.62403	0.0578275	0.0172566	0.154343	0.0923809
chr9	134348915	134349015	4260912	0	+	0.61	(0.58,1]	chr9	406311	219	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.58025	4.60214	4.62403	0.0578275	0.0172566	0.154343	0.0923809
chr9	101064274	101064374	4201881	0	+	0.35	(0.33,0.36]	chr9	399114	348	INTRON	INTRON	PLPPR1	ENSG00000148123.15	ENST00000374874.8	protein_coding	protein_coding	protein_coding	protein_coding	1	95	2	4.30948	4.60208	4.89468	0.0629186	0.00123727	0.160778	0.0164942
chr12	133039147	133039247	5354339	0	+	0.35	(0.33,0.36]	chr12	523870	1	SS5_PROX	SS5_PROX:INTRON	ZNF84	ENSG00000198040.11	ENST00000392319.6:ENST00000543758.5:ENST00000438628.6:ENST00000540031.5:ENST00000539098.5:ENST00000539354.6:ENST00000539686.5:ENST00000536123.5:ENST00000327668.11:ENST00000543310.5:ENST00000545299.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	114	2	3.42477	4.60176	5.77875	0.0172683	0.00390283	0.0897247	0.0364654
chr15	101353846	101353946	6363077	0	-	0.5	(0.485,0.523]	chr15	627201	57	INTRON	INTRON	PCSK6	ENSG00000140479.18	ENST00000677364.1:ENST00000676598.1:ENST00000558951.5:ENST00000398185.6:ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000679007.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000559605.1:ENST00000560902.5:ENST00000611967.4:ENST00000615296.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	98	2	3.32827	4.6012900000000005	5.87431	0.0294165	0.00127835	0.116079	0.0168904
chr16	75236416	75236503	6644472	0	-	0.551724	(0.523,0.58]	chr16	664410	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000566982.1:ENST00000563038.5:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10:ENST00000569340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	287	2	4.39023	4.601265	4.8123	0.00448009	5.60889e-5	0.0436138	0.00178542
chr10	35413646	35413746	4476446	0	+	0.57	(0.523,0.58]	chr10	428113	184	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.23973	4.600849999999999	4.96197	0.0521137	0.0444247	0.153511	0.148503
chr11	65601055	65601154	5051594	0	-	0.535354	(0.523,0.58]	chr11	491142	9	INTRON	INTRON	MAP3K11	ENSG00000173327.8	ENST00000530153.5:ENST00000532507.5:ENST00000309100.8:ENST00000524848.5:ENST00000534432.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.23973	4.600849999999999	4.96197	0.0521137	0.0444247	0.153511	0.148503
chr3	65418838	65418938	1809638	0	-	0.58	(0.523,0.58]	chr3	187193	170	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.23973	4.600849999999999	4.96197	0.0521137	0.0444247	0.153511	0.148503
chr7	74498802	74498902	3391815	0	+	0.54	(0.523,0.58]	chr7	327343	443	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.23973	4.600849999999999	4.96197	0.0521137	0.0444247	0.153511	0.148503
chr3	169777392	169777489	1623904	0	+	0.381443	(0.36,0.39]	chr3	170128	25	INTRON	INTRON	MYNN	ENSG00000085274.16	ENST00000349841.10:ENST00000602751.5:ENST00000356716.8:ENST00000544106.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.56926	4.60048	4.6317	0.0950937	0.031369	0.189021	0.127822
chr6	170550156	170550251	3305433	0	-	0.378947	(0.36,0.39]	chr6	320091	12	EXON_LNCRNA	EXON_LNCRNA:INTRON	PSMB1	ENSG00000008018.9	ENST00000262193.7:ENST00000462957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.56926	4.60048	4.6317	0.0950937	0.031369	0.189021	0.127822
chr12	419533	419632	5148380	0	+	0.515152	(0.485,0.523]	chr12	500517	5	INTRON	INTRON	CCDC77	ENSG00000120647.10	ENST00000540180.5:ENST00000422000.5:ENST00000543504.5:ENST00000540344.5:ENST00000412006.6:ENST00000239830.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	81	2	3.80685	4.60027	5.39369	0.0275819	0.00388927	0.112782	0.0363508
chr12	122097961	122098061	5343568	0	+	0.58	(0.523,0.58]	chr12	521864	183	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.13061	4.60009	5.06957	0.0533354	0.0448011	0.167062	0.140478
chr3	50271680	50271780	1469946	0	+	0.57	(0.523,0.58]	chr3	157667	2	SS5_PROX	SS5_PROX:INTRON	SEMA3B	ENSG00000012171.20	ENST00000618865.4:ENST00000619119.4:ENST00000616701.5:ENST00000612509.4:ENST00000433753.4:ENST00000611067.4:ENST00000441915.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	39	2	4.13061	4.60009	5.06957	0.0533354	0.0448011	0.167062	0.140478
chr9	129618621	129618721	4251017	0	+	0.28	[0,0.29]	chr9	404743	91	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.14609	4.60009	5.05409	0.0482299	0.0318802	0.159496	0.12158
chr22	32820494	32820594	7717814	0	+	0.49	(0.485,0.523]	chr22	807776	180	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	2	116	2	2.59183	4.60006	6.60829	0.0250389	0.00342137	0.114418	0.0374749
chr19	47227495	47227576	7392355	0	-	0.641975	(0.58,1]	chr19	768098	4	INTRON	INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.89258	4.6000250000000005	5.30747	0.0196049	0.00229214	0.0955413	0.0253494
chr11	64146256	64146355	5049040	0	-	0.626263	(0.58,1]	chr11	490257	195	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	74	2	3.72143	4.5999099999999995	5.47839	0.0145198	0.00366718	0.0823104	0.0346803
chr7	143385035	143385132	3510755	0	+	0.587629	(0.58,1]	chr7	338486	4	INTRON	INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	74	2	3.72143	4.5999099999999995	5.47839	0.0145198	0.00366718	0.0823104	0.0346803
chr4	10102801	10102900	2195678	0	-	0.545455	(0.523,0.58]	chr4	222412	33	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	81	2	3.84801	4.599625	5.35124	0.0295772	0.00343547	0.116079	0.0333396
chr11	14470947	14471045	4999793	0	-	0.408163	(0.39,0.419]	chr11	483818	10	INTRON	INTRON	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.56871	4.59954	4.63037	0.0963077	0.0315133	0.189169	0.127889
chr4	121679488	121679587	2318945	0	-	0.414141	(0.39,0.419]	chr4	232991	6	INTRON	INTRON	ANXA5	ENSG00000164111.15	ENST00000296511.10:ENST00000501272.6:ENST00000506395.5:ENST00000515017.5:ENST00000511552.5:ENST00000509016.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.56871	4.59954	4.63037	0.0963077	0.0315133	0.189169	0.127889
chr9	101062076	101062176	4201859	0	+	0.41	(0.39,0.419]	chr9	399114	326	INTRON	INTRON	PLPPR1	ENSG00000148123.15	ENST00000374874.8	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.56871	4.59954	4.63037	0.0963077	0.0315133	0.189169	0.127889
chr5	104274977	104275077	2497539	0	+	0.3	(0.29,0.33]	chr5	248658	1697	INTRON	INTRON	LINC02163	ENSG00000251026.2	ENST00000662211.1:ENST00000666145.1	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.12201	4.599385	5.07676	0.0564091	0.0412683	0.171933	0.136301
chr16	29264016	29264116	6433477	0	+	0.5	(0.485,0.523]	chr16	636745	119	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.23628	4.599335	4.96239	0.0518747	0.045492200000000003	0.154539	0.148503
chr17	37522139	37522239	6893406	0	-	0.5	(0.485,0.523]	chr17	700004	11	INTRON	INTRON	SYNRG	ENSG00000275066.5	ENST00000612223.5:ENST00000621136.4:ENST00000616179.4:ENST00000614941.4:ENST00000619541.4:ENST00000622045.4:ENST00000619914.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	38	2	4.23628	4.599335	4.96239	0.0518747	0.045492200000000003	0.154539	0.148503
chr21	46548694	46548790	7634398	0	+	0.5	(0.485,0.523]	chr21	798458	13	INTRON	INTRON	DIP2A	ENSG00000160305.18	ENST00000417564.3:ENST00000651436.1:ENST00000400274.5:ENST00000457905.7	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.23628	4.599335	4.96239	0.0518747	0.045492200000000003	0.154539	0.148503
chr9	124335096	124335196	4236282	0	+	0.49	(0.485,0.523]	chr9	402147	73	INTRON	INTRON	NEK6	ENSG00000119408.17	ENST00000373603.5:ENST00000540326.5:ENST00000320246.10:ENST00000373600.7:ENST00000545174.5:ENST00000444973.5:ENST00000454453.5:ENST00000425237.5:ENST00000546191.5:ENST00000422297.5:ENST00000539416.5:ENST00000394199.6	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.23628	4.599335	4.96239	0.0518747	0.045492200000000003	0.154539	0.148503
chr16	52537250	52537350	6589762	0	-	0.42	(0.419,0.45]	chr16	658709	173	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	119	2	2.71246	4.599245	6.48603	0.0223142	0.00734278	0.108193	0.0570055
chr10	132713350	132713450	4618601	0	+	0.67	(0.58,1]	chr10	441181	25	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000487614.1:ENST00000498337.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	76	2	3.30273	4.59907	5.89541	0.0107069	0.0066708	0.0700635	0.0540577
chr17	77306242	77306341	6803413	0	+	0.575758	(0.523,0.58]	chr17	686716	110	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	101	2	3.53814	4.598865	5.65959	0.020829	0.0021416	0.0990379	0.0240825
chr11	70797442	70797542	5062256	0	-	0.53	(0.523,0.58]	chr11	492701	796	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	80	2	3.44013	4.598775	5.75742	0.0155135	0.00938609	0.0849828	0.064735
chr11	12729110	12729210	4802191	0	+	0.38	(0.36,0.39]	chr11	460555	532	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000527376.3:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.20082	4.59877	4.99672	0.0604395	0.0581116	0.175217	0.158506
chr12	64620016	64620115	5250460	0	+	0.363636	(0.36,0.39]	chr12	511989	85	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.20082	4.59877	4.99672	0.0604395	0.0581116	0.175217	0.158506
chr6	156812840	156812940	3049807	0	+	0.29	[0,0.29]	chr6	296987	330	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000636748.1:ENST00000494260.2:ENST00000637910.1:ENST00000636607.1:ENST00000414678.7:ENST00000638000.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	37	2	4.25528	4.598755000000001	4.94223	0.0399299	0.0379936	0.144065	0.131324
chr3	71067682	71067781	1826092	0	-	0.50505	(0.485,0.523]	chr3	188128	21	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000475937.6:ENST00000327590.9:ENST00000648426.1:ENST00000497355.7:ENST00000648748.3:ENST00000649695.3:ENST00000498215.7:ENST00000484350.5:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000491238.8:ENST00000648384.1:ENST00000648380.1:ENST00000650188.1:ENST00000650068.2:ENST00000468577.6:ENST00000649592.1:ENST00000648794.2:ENST00000649513.1:ENST00000649431.2:ENST00000647614.1:ENST00000472382.7:ENST00000649760.1:ENST00000650555.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	80	2	3.5054	4.5987	5.692	0.0171772	0.00816275	0.0895975	0.0589533
chr2	11721257	11721356	721783	0	+	0.50505	(0.485,0.523]	chr2	84318	71	INTRON	INTRON	LPIN1	ENSG00000134324.12	ENST00000449576.6	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.12717	4.59858	5.06999	0.0545434	0.0445854	0.167824	0.140478
chr5	35113060	35113160	2635657	0	-	0.51	(0.485,0.523]	chr5	261505	230	INTRON	INTRON	PRLR	ENSG00000113494.17	ENST00000514088.5:ENST00000542609.5:ENST00000509140.5:ENST00000620785.4:ENST00000618457.5:ENST00000508107.5:ENST00000619676.4:ENST00000514206.5:ENST00000509839.5:ENST00000503330.5:ENST00000504500.5:ENST00000515839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.12717	4.59858	5.06999	0.0545434	0.0445854	0.167824	0.140478
chr10	75799810	75799910	4524165	0	+	0.32	(0.29,0.33]	chr10	432282	164	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	111	2	3.49824	4.59854	5.69884	0.0155382	0.00286049	0.0849828	0.0294638
chr12	132534361	132534460	5352959	0	+	0.585859	(0.58,1]	chr12	523670	60	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	3.13234	4.59814	6.06394	0.0322188	3.80904e-4	0.121593	0.00721291
chr16	50608093	50608193	6452008	0	+	0.49	(0.485,0.523]	chr16	639903	4	SS3_PROX	SS3_PROX:INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	148	2	2.60562	4.597975	6.59033	0.011149	0.00353829	0.071709	0.0381878
chr10	32035789	32035889	4662127	0	-	0.4	(0.39,0.419]	chr10	445080	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KIF5B	ENSG00000170759.11	ENST00000302418.5	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	3.74353	4.597885	5.45224	0.032783	0.00554536	0.122593	0.0456911
chr18	74766037	74766137	7090935	0	+	0.4	(0.39,0.419]	chr18	722426	1246	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000582337.5:ENST00000309902.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.20027	4.597825	4.99538	0.0613573	0.0583327	0.175217	0.158506
chr20	35819580	35819679	7465126	0	+	0.40404	(0.39,0.419]	chr20	777358	176	INTRON	INTRON	PHF20	ENSG00000025293.17	ENST00000461122.5:ENST00000374012.8:ENST00000452270.5:ENST00000374000.8:ENST00000339089.10:ENST00000481202.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	39	2	4.20027	4.597825	4.99538	0.0613573	0.0583327	0.175217	0.158506
chr7	128467373	128467473	3472794	0	+	0.41	(0.39,0.419]	chr7	335505	91	INTRON	INTRON	ENSG00000273184	ENSG00000273184.1	ENST00000462662.1	lncRNA	lncRNA	lncRNA	lncRNA	0	39	2	4.20027	4.597825	4.99538	0.0613573	0.0583327	0.175217	0.158506
chr9	110169574	110169672	4217878	0	+	0.397959	(0.39,0.419]	chr9	400077	12	UTR3	UTR3:EXON_MRNA	PALM2AKAP2	ENSG00000157654.19	ENST00000374530.7:ENST00000302798.7:ENST00000434623.6:ENST00000374525.5	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.20027	4.597825	4.99538	0.0613573	0.0583327	0.175217	0.158506
chr15	67158400	67158500	6140007	0	+	0.48	(0.45,0.485]	chr15	603964	183	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1:ENST00000559092.1:ENST00000560175.5:ENST00000540846.6:ENST00000558894.5:ENST00000439724.7:ENST00000558739.1:ENST00000681239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.41963	4.59767	4.77571	0.0719884	0.0355247	0.168159	0.137983
chr9	129340562	129340658	4250343	0	+	0.479167	(0.45,0.485]	chr9	404662	13	INTRON	INTRON	LINC01503	ENSG00000233901.7	ENST00000427109.2:ENST00000654735.1:ENST00000654190.1:ENST00000657886.1:ENST00000661745.1:ENST00000436710.6:ENST00000660635.1:ENST00000657651.1:ENST00000665063.2:ENST00000667257.1:ENST00000690929.1:ENST00000654148.1:ENST00000444125.3:ENST00000666671.1:ENST00000660036.1:ENST00000657393.1:ENST00000659864.1	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.41963	4.59767	4.77571	0.0719884	0.0355247	0.168159	0.137983
chr15	67134220	67134320	6139762	0	+	0.47	(0.45,0.485]	chr15	603952	57	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1:ENST00000559092.1:ENST00000560175.5:ENST00000540846.6:ENST00000558894.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	85	2	3.12941	4.59755	6.06569	0.0199365	0.0104281	0.100864	0.0687558
chr3	58116486	58116586	1484145	0	+	0.61	(0.58,1]	chr3	159674	38	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000493452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	104	2	4.04904	4.597004999999999	5.14497	0.0056478	0.00474658	0.0495171	0.0413976
chr14	70027842	70027942	5872661	0	+	0.57	(0.523,0.58]	chr14	573363	40	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.50593	4.59689	4.68785	0.094303	0.0194172	0.188571	0.0994526
chr16	30668026	30668115	6438015	0	+	0.561798	(0.523,0.58]	chr16	637862	2	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FBRS	ENSG00000156860.16	ENST00000356166.11:ENST00000543786.5:ENST00000287468.5:ENST00000570170.1:ENST00000494101.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.50593	4.59689	4.68785	0.094303	0.0194172	0.188571	0.0994526
chr17	18018786	18018886	6866315	0	-	0.55	(0.523,0.58]	chr17	695952	1	SS3_PROX	SS3_PROX:INTRON	ATPAF2	ENSG00000171953.16	ENST00000584205.5:ENST00000462733.5:ENST00000585101.5:ENST00000474627.8:ENST00000496852.5:ENST00000467560.5:ENST00000581698.1:ENST00000469327.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.50593	4.59689	4.68785	0.094303	0.0194172	0.188571	0.0994526
chr2	240521756	240521846	1394653	0	-	0.533333	(0.523,0.58]	chr2	149020	9	INTRON	INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000405523.7	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.50593	4.59689	4.68785	0.094303	0.0194172	0.188571	0.0994526
chr21	45433444	45433544	7630597	0	+	0.58	(0.523,0.58]	chr21	797656	276	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.50593	4.59689	4.68785	0.094303	0.0194172	0.188571	0.0994526
chr6	170357825	170357925	3076154	0	+	0.55	(0.523,0.58]	chr6	299169	2	SS3_PROX	SS3_PROX:INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.50593	4.59689	4.68785	0.094303	0.0194172	0.188571	0.0994526
chr7	67189202	67189301	3385926	0	+	0.555556	(0.523,0.58]	chr7	326607	56	INTRON	INTRON	TYW1	ENSG00000198874.14	ENST00000359626.10:ENST00000361660.8:ENST00000495971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.50593	4.59689	4.68785	0.094303	0.0194172	0.188571	0.0994526
chr9	114157691	114157790	4225722	0	+	0.575758	(0.523,0.58]	chr9	400740	13	INTRON	INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.50593	4.59689	4.68785	0.094303	0.0194172	0.188571	0.0994526
chr9	124278366	124278466	4235702	0	+	0.58	(0.523,0.58]	chr9	402088	127	INTRON	INTRON	NEK6	ENSG00000119408.17	ENST00000373603.5:ENST00000540326.5:ENST00000320246.10:ENST00000373600.7:ENST00000545174.5:ENST00000444973.5:ENST00000454453.5:ENST00000425237.5:ENST00000373596.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.50593	4.59689	4.68785	0.094303	0.0194172	0.188571	0.0994526
chr7	73598934	73599025	3602846	0	-	0.461538	(0.45,0.485]	chr7	347628	9	INTRON	INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	100	2	3.33209	4.596575	5.86106	0.0308842	0.00153611	0.119556	0.0191553
chr4	856492	856591	2178149	0	-	0.606061	(0.58,1]	chr4	220550	28	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5:ENST00000511980.5:ENST00000510799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	88	2	3.09824	4.59637	6.0945	0.0341637	3.47472e-4	0.125129	0.00673552
chr12	96021646	96021746	5479166	0	-	0.42	(0.419,0.45]	chr12	538666	1	SS5_PROX	SS5_PROX:INTRON	LTA4H	ENSG00000111144.10	ENST00000228740.7:ENST00000552789.5:ENST00000553041.5:ENST00000413268.6:ENST00000548852.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	106	2	3.33075	4.596295	5.86184	0.0356124	0.00223565	0.127588	0.024843
chr16	81680820	81680920	6510119	0	+	0.5	(0.485,0.523]	chr16	645979	18	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	2	108	2	3.34087	4.596085	5.8513	0.0131886	0.00419923	0.0785398	0.0380601
chr10	5648173	5648272	4622423	0	-	0.535354	(0.523,0.58]	chr10	441815	53	INTRON	INTRON	ASB13	ENSG00000196372.13	ENST00000357700.11:ENST00000479033.1:ENST00000459912.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	97	2	3.2478	4.595845	5.94389	0.0335771	0.0010207	0.124319	0.0143498
chr10	79118614	79118714	4532541	0	+	0.7	(0.58,1]	chr10	432421	3	SS3_PROX	SS3_PROX:INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.18518	4.595515	5.00585	0.0374658	0.0323732	0.139793	0.121593
chr16	85515683	85515782	6518228	0	+	0.626263	(0.58,1]	chr16	646391	1564	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.18518	4.595515	5.00585	0.0374658	0.0323732	0.139793	0.121593
chr16	85560559	85560659	6518678	0	+	0.62	(0.58,1]	chr16	646396	38	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.18518	4.595515	5.00585	0.0374658	0.0323732	0.139793	0.121593
chr18	13240467	13240566	7022965	0	+	0.59596	(0.58,1]	chr18	717514	211	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000590371.5:ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000590115.1:ENST00000677055.1:ENST00000399848.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	37	2	4.18518	4.595515	5.00585	0.0374658	0.0323732	0.139793	0.121593
chr19	17484041	17484121	7220773	0	+	0.5875	(0.58,1]	chr19	738262	3	UTR5	UTR5:EXON_MRNA:INTRON	SLC27A1	ENSG00000130304.17	ENST00000600277.5:ENST00000598424.5:ENST00000252595.12:ENST00000599380.5:ENST00000600297.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.18518	4.595515	5.00585	0.0374658	0.0323732	0.139793	0.121593
chr2	3269873	3269972	1080804	0	-	0.616162	(0.58,1]	chr2	117623	74	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.18518	4.595515	5.00585	0.0374658	0.0323732	0.139793	0.121593
chr21	44853020	44853120	7678362	0	-	0.61	(0.58,1]	chr21	802742	10	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000397886.3	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.18518	4.595515	5.00585	0.0374658	0.0323732	0.139793	0.121593
chr22	36329051	36329150	7806809	0	-	0.585859	(0.58,1]	chr22	818135	2	INTRON	INTRON	MYH9	ENSG00000100345.23	ENST00000216181.11:ENST00000685801.1:ENST00000692930.1:ENST00000685187.1:ENST00000691687.1:ENST00000685191.1:ENST00000688137.1:ENST00000401701.1:ENST00000691296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.18518	4.595515	5.00585	0.0374658	0.0323732	0.139793	0.121593
chr5	150507698	150507798	2565087	0	+	0.6	(0.58,1]	chr5	254947	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDST1	ENSG00000070614.15	ENST00000522491.1:ENST00000519157.1:ENST00000524161.1:ENST00000523767.5:ENST00000518299.1:ENST00000518346.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.18518	4.595515	5.00585	0.0374658	0.0323732	0.139793	0.121593
chr22	46290199	46290299	7743252	0	+	0.54	(0.523,0.58]	chr22	811891	3	SS5_PROX	SS5_PROX:INTRON	TTC38	ENSG00000075234.17	ENST00000381031.8:ENST00000451998.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	218	2	4.57635	4.595504999999999	4.61466	0.00290852	4.64368e-4	0.0342042	0.00826853
chr13	26659743	26659843	5553743	0	+	0.51	(0.485,0.523]	chr13	548008	170	INTRON	INTRON	WASF3	ENSG00000132970.14	ENST00000335327.6:ENST00000361042.8:ENST00000671038.1:ENST00000496788.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.50634	4.59534	4.68434	0.0939553	0.0200045	0.188571	0.100864
chr13	113541988	113542087	5658702	0	+	0.515152	(0.485,0.523]	chr13	555728	21	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.50634	4.59534	4.68434	0.0939553	0.0200045	0.188571	0.100864
chr2	73928540	73928638	833524	0	+	0.520408	(0.485,0.523]	chr2	94183	11	INTRON	INTRON	DGUOK	ENSG00000114956.20	ENST00000348222.3:ENST00000629438.2:ENST00000418996.5:ENST00000264093.9:ENST00000462551.1:ENST00000489796.5:ENST00000462685.1:ENST00000493055.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.50634	4.59534	4.68434	0.0939553	0.0200045	0.188571	0.100864
chr21	45473394	45473494	7631000	0	+	0.52	(0.485,0.523]	chr21	797669	1	SS3_PROX	SS3_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.50634	4.59534	4.68434	0.0939553	0.0200045	0.188571	0.100864
chr7	29384000	29384100	3336193	0	+	0.5	(0.485,0.523]	chr7	322892	28	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5:ENST00000222792.11:ENST00000409350.5:ENST00000409964.6:ENST00000409922.5:ENST00000412536.5:ENST00000478128.6:ENST00000482820.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.50634	4.59534	4.68434	0.0939553	0.0200045	0.188571	0.100864
chr7	78941411	78941511	3621405	0	-	0.51	(0.485,0.523]	chr7	349208	369	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000440555.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.50634	4.59534	4.68434	0.0939553	0.0200045	0.188571	0.100864
chr1	17673885	17673985	54950	0	+	0.59	(0.58,1]	chr1	5603	89	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	89	2	3.43525	4.595155	5.75506	0.0187495	9.38062e-4	0.0936297	0.0135546
chr19	46979391	46979491	7275367	0	+	0.53	(0.523,0.58]	chr19	747275	416	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	80	2	3.4003	4.5947700000000005	5.78924	0.0147166	0.0103016	0.0826843	0.0678983
chr10	14556905	14557004	4633226	0	-	0.575758	(0.523,0.58]	chr10	442809	1	INTRON	INTRON	FAM107B	ENSG00000065809.14	ENST00000181796.7:ENST00000622567.4:ENST00000468747.5:ENST00000378467.8:ENST00000487335.5:ENST00000378465.7:ENST00000378458.6:ENST00000378462.5:ENST00000479731.5:ENST00000468492.5:ENST00000452706.6:ENST00000488576.5:ENST00000442012.5:ENST00000482277.5:ENST00000472095.5:ENST00000471815.5:ENST00000464952.5:ENST00000495292.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.58058	4.59463	4.60868	0.0860403	0.0226775	0.181766	0.108193
chr10	132575240	132575340	4617213	0	+	0.54	(0.523,0.58]	chr10	441139	367	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.58058	4.59463	4.60868	0.0860403	0.0226775	0.181766	0.108193
chr11	66906620	66906720	5054470	0	-	0.55	(0.523,0.58]	chr11	491804	341	INTRON	INTRON	PC	ENSG00000173599.15	ENST00000529047.6:ENST00000393960.7:ENST00000393955.6:ENST00000393958.7:ENST00000651036.1:ENST00000651469.1:ENST00000652125.1:ENST00000651854.1:ENST00000528224.2:ENST00000525476.2:ENST00000528403.6:ENST00000524491.6:ENST00000531614.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.58058	4.59463	4.60868	0.0860403	0.0226775	0.181766	0.108193
chr16	85441814	85441914	6517489	0	+	0.54	(0.523,0.58]	chr16	646391	825	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.58058	4.59463	4.60868	0.0860403	0.0226775	0.181766	0.108193
chr2	235556431	235556531	1063162	0	+	0.54	(0.523,0.58]	chr2	115656	315	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.58058	4.59463	4.60868	0.0860403	0.0226775	0.181766	0.108193
chr3	126469501	126469600	1907570	0	-	0.565657	(0.523,0.58]	chr3	193585	28	INTRON	INTRON	ZXDC	ENSG00000070476.15	ENST00000389709.8:ENST00000515545.5:ENST00000336332.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.58058	4.59463	4.60868	0.0860403	0.0226775	0.181766	0.108193
chr3	185784386	185784486	1970954	0	-	0.58	(0.523,0.58]	chr3	200398	161	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.58058	4.59463	4.60868	0.0860403	0.0226775	0.181766	0.108193
chr7	79453381	79453471	3402809	0	+	0.566667	(0.523,0.58]	chr7	328668	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MAGI2-AS3	ENSG00000234456.10	ENST00000616796.4:ENST00000429408.6:ENST00000683943.1:ENST00000426835.6:ENST00000446159.6	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	4.58058	4.59463	4.60868	0.0860403	0.0226775	0.181766	0.108193
chr9	133801695	133801795	4428408	0	-	0.56	(0.523,0.58]	chr9	423268	35	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.58058	4.59463	4.60868	0.0860403	0.0226775	0.181766	0.108193
chr1	165880547	165880647	263005	0	+	0.45	(0.419,0.45]	chr1	31044	523	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1	protein_coding	protein_coding	protein_coding	protein_coding	1	90	2	3.02039	4.594255	6.16812	0.0276403	0.0123115	0.120359	0.0756356
chr16	50625064	50625144	6452180	0	+	0.625	(0.58,1]	chr16	639919	2	SS3_PROX	SS3_PROX:INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	4	135	2	2.76718	4.59398	6.42078	0.00576548	0.00230938	0.0470066	0.0302623
chr1	30981660	30981738	435113	0	-	0.307692	(0.29,0.33]	chr1	51537	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000532678.1:ENST00000526128.1:ENST00000526215.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	148	2	2.62715	4.59389	6.56063	0.0108083	0.00330556	0.070543	0.0368376
chr17	80561375	80561475	6809066	0	+	0.41	(0.39,0.419]	chr17	687806	152	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	84	2	3.6226	4.59389	5.56518	0.027797	0.0073612	0.112962	0.055174
chr11	18011903	18012001	5015378	0	-	0.346939	(0.33,0.36]	chr11	484704	14	INTRON	INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528200.5:ENST00000532265.5:ENST00000529728.5:ENST00000530613.5:ENST00000532389.5:ENST00000530925.5:ENST00000533328.5:ENST00000532212.5:ENST00000524716.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	111	2	3.04879	4.593885	6.13898	0.00978051	0.00953039	0.0664239	0.0658012
chr2	135672642	135672742	901959	0	+	0.33	(0.29,0.33]	chr2	101650	68	INTRON	INTRON	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000410054.5:ENST00000628915.2:ENST00000409606.5:ENST00000429703.6	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.58769	4.5938099999999995	4.59993	0.0806047	0.0243639	0.177452	0.113231
chr7	95418175	95418250	3641299	0	-	0.306667	(0.29,0.33]	chr7	350623	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	PON2	ENSG00000105854.13	ENST00000222572.8:ENST00000633531.1:ENST00000455123.5:ENST00000433091.6:ENST00000633192.1:ENST00000446142.5:ENST00000469926.5:ENST00000491069.5:ENST00000490778.5:ENST00000632034.1:ENST00000493290.5:ENST00000478801.5:ENST00000460873.5:ENST00000493469.5:ENST00000471883.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.58769	4.5938099999999995	4.59993	0.0806047	0.0243639	0.177452	0.113231
chr7	133677125	133677225	3489413	0	+	0.3	(0.29,0.33]	chr7	336701	466	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.58769	4.5938099999999995	4.59993	0.0806047	0.0243639	0.177452	0.113231
chr19	32951534	32951632	7363569	0	-	0.387755	(0.36,0.39]	chr19	763247	28	INTRON	INTRON	CEP89	ENSG00000121289.18	ENST00000305768.10:ENST00000591698.5:ENST00000586984.6:ENST00000590597.6:ENST00000593276.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.30212	4.59356	4.885	0.0697729	0.0494303	0.167185	0.160725
chr1	27489685	27489785	431248	0	-	0.57	(0.523,0.58]	chr1	50974	3	SS5_PROX	SS5_PROX:INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.34118	4.5934349999999995	4.84569	0.0610722	0.0372357	0.158506	0.139793
chr12	20852	20951	5355601	0	-	0.535354	(0.523,0.58]	chr12	524080	20	INTRON	INTRON	WASH8P	ENSG00000226210.3	ENST00000400706.3	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	0	37	2	4.34118	4.5934349999999995	4.84569	0.0610722	0.0372357	0.158506	0.139793
chr16	81641663	81641763	6509714	0	+	0.58	(0.523,0.58]	chr16	645926	196	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.34118	4.5934349999999995	4.84569	0.0610722	0.0372357	0.158506	0.139793
chr17	77374857	77374953	6804111	0	+	0.5625	(0.523,0.58]	chr17	686752	1	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1:ENST00000423034.6:ENST00000590059.5:ENST00000587514.1:ENST00000590586.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.34118	4.5934349999999995	4.84569	0.0610722	0.0372357	0.158506	0.139793
chr21	46651111	46651208	7634806	0	+	0.57732000000000006	(0.523,0.58]	chr21	798580	10	INTRON	INTRON	PRMT2	ENSG00000160310.19	ENST00000451211.6:ENST00000458387.6:ENST00000397638.6:ENST00000291705.11:ENST00000397637.5:ENST00000334494.8:ENST00000355680.8:ENST00000440086.5:ENST00000482508.5:ENST00000481861.1:ENST00000455177.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.34118	4.5934349999999995	4.84569	0.0610722	0.0372357	0.158506	0.139793
chr6	166334583	166334682	3301419	0	-	0.535354	(0.523,0.58]	chr6	319660	28	INTRON	INTRON	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000478705.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.34118	4.5934349999999995	4.84569	0.0610722	0.0372357	0.158506	0.139793
chr7	24853931	24854031	3554708	0	-	0.56	(0.523,0.58]	chr7	343456	9	INTRON	INTRON	OSBPL3	ENSG00000070882.13	ENST00000313367.7:ENST00000409863.5:ENST00000396431.5:ENST00000409452.5:ENST00000409759.5:ENST00000409555.5:ENST00000396429.5:ENST00000409069.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.34118	4.5934349999999995	4.84569	0.0610722	0.0372357	0.158506	0.139793
chr1	43561615	43561715	107055	0	+	0.51	(0.485,0.523]	chr1	13192	73	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	80	2	3.4289	4.59337	5.75784	0.0154142	0.00977282	0.0849828	0.0664239
chr17	72726508	72726607	6965545	0	-	0.444444	(0.419,0.45]	chr17	710482	10	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000581581.1:ENST00000579319.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	85	2	3.59354	4.593344999999999	5.59315	0.029494	0.00820853	0.116079	0.0592025
chr20	41558830	41558929	7564226	0	-	0.424242	(0.419,0.45]	chr20	790090	71	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	86	2	3.27753	4.59331	5.90909	0.0184411	0.0163857	0.0927235	0.0910838
chr12	120983267	120983367	5340963	0	+	0.4	(0.39,0.419]	chr12	521546	38	INTRON	INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000400024.6:ENST00000560968.5:ENST00000402929.5:ENST00000535955.5:ENST00000538626.2:ENST00000538646.5:ENST00000541924.5:ENST00000544574.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	114	2	2.89662	4.593265	6.28991	0.0145147	0.00887176	0.0836197	0.0634853
chr13	97240931	97241031	5630990	0	+	0.43	(0.419,0.45]	chr13	553173	180	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	138	2	2.88251	4.593154999999999	6.3038	0.00990101	0.00961019	0.0671959	0.0655402
chr2	134452032	134452132	898768	0	+	0.5	(0.485,0.523]	chr2	101298	33	UTR3	UTR3:EXON_MRNA	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	2	113	2	3.63577	4.593154999999999	5.55054	0.0215787	0.00191195	0.100612	0.0223437
chr10	5648869	5648969	4622430	0	-	0.6	(0.58,1]	chr10	441817	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ASB13	ENSG00000196372.13	ENST00000357700.11:ENST00000479033.1:ENST00000459912.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.49116	4.59313	4.6951	0.0521567	0.0207449	0.148503	0.102713
chr10	103716581	103716681	4757266	0	-	0.59	(0.58,1]	chr10	454791	231	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.49116	4.59313	4.6951	0.0521567	0.0207449	0.148503	0.102713
chr16	573472	573565	6368151	0	+	0.612903	(0.58,1]	chr16	627955	5	INTRON	INTRON	PIGQ	ENSG00000007541.17	ENST00000293874.2:ENST00000409527.6:ENST00000321878.10:ENST00000439574.1:ENST00000422307.6:ENST00000636657.1:ENST00000026218.9:ENST00000470411.2:ENST00000443147.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.49116	4.59313	4.6951	0.0521567	0.0207449	0.148503	0.102713
chr2	239348580	239348680	1392196	0	-	0.63	(0.58,1]	chr2	148752	241	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.49116	4.59313	4.6951	0.0521567	0.0207449	0.148503	0.102713
chr20	34567046	34567146	7547098	0	-	0.59	(0.58,1]	chr20	787854	57	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.49116	4.59313	4.6951	0.0521567	0.0207449	0.148503	0.102713
chr22	20137405	20137504	7687005	0	+	0.666667	(0.58,1]	chr22	804236	50	INTRON	INTRON	ZDHHC8	ENSG00000099904.16	ENST00000436518.5:ENST00000334554.12:ENST00000405930.3:ENST00000320602.11:ENST00000468112.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.49116	4.59313	4.6951	0.0521567	0.0207449	0.148503	0.102713
chr5	1101017	1101116	2608861	0	-	0.666667	(0.58,1]	chr5	259667	64	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.49116	4.59313	4.6951	0.0521567	0.0207449	0.148503	0.102713
chr7	143383744	143383822	3510741	0	+	0.615385	(0.58,1]	chr7	338479	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.49116	4.59313	4.6951	0.0521567	0.0207449	0.148503	0.102713
chr11	70740285	70740385	5061684	0	-	0.49	(0.485,0.523]	chr11	492701	224	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.581	4.59309	4.60518	0.085711	0.0233371	0.181766	0.110098
chr3	142790119	142790219	1592269	0	+	0.49	(0.485,0.523]	chr3	168199	47	INTRON	INTRON	TRPC1	ENSG00000144935.16	ENST00000476941.6:ENST00000273482.10	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.581	4.59309	4.60518	0.085711	0.0233371	0.181766	0.110098
chrX	153338802	153338901	7960565	0	+	0.50505	(0.485,0.523]	chrX	833135	17	INTRON	INTRON	ZNF275	ENSG00000063587.15	ENST00000370249.3:ENST00000650114.2:ENST00000370251.3	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.581	4.59309	4.60518	0.085711	0.0233371	0.181766	0.110098
chr7	713207	713304	3525231	0	-	0.587629	(0.58,1]	chr7	340440	1	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000537384.6:ENST00000403562.5:ENST00000417852.5:ENST00000488474.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	75	2	3.9245	4.5929400000000005	5.26138	0.021217	0.00209574	0.0996078	0.0238576
chr5	32158762	32158862	2630502	0	-	0.38	(0.36,0.39]	chr5	261026	145	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	84	2	3.65573	4.5928	5.52987	0.0287883	0.0067964	0.115991	0.0524192
chr2	175930299	175930399	1322558	0	-	0.3	(0.29,0.33]	chr2	141250	1	SS3_PROX	SS3_PROX:INTRON	LNPK	ENSG00000144320.14	ENST00000272748.9:ENST00000544803.5:ENST00000409660.5:ENST00000479012.1:ENST00000475515.1:ENST00000431754.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.33251	4.59268	4.85285	0.0567079	0.0396433	0.154343	0.143388
chr14	34995398	34995496	5777552	0	+	0.397959	(0.39,0.419]	chr14	566416	16	INTRON	INTRON	SRP54	ENSG00000100883.13	ENST00000556994.5:ENST00000678836.1:ENST00000546080.6:ENST00000554803.5:ENST00000555746.6:ENST00000678963.1:ENST00000677561.1:ENST00000678477.1:ENST00000677621.1:ENST00000553923.2:ENST00000679045.1:ENST00000678519.1:ENST00000553544.1:ENST00000678627.1:ENST00000216774.11:ENST00000555317.5:ENST00000555557.5:ENST00000678274.1:ENST00000556380.3:ENST00000555535.1:ENST00000677647.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	38	2	4.30157	4.592615	4.88366	0.0707789	0.0496288	0.168159	0.160725
chr18	28132995	28133095	7140204	0	-	0.4	(0.39,0.419]	chr18	726157	354	INTRON	INTRON	CDH2	ENSG00000170558.10	ENST00000269141.8:ENST00000676445.1:ENST00000675708.1:ENST00000430882.6:ENST00000413878.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.30157	4.592615	4.88366	0.0707789	0.0496288	0.168159	0.160725
chr21	33234251	33234351	7609111	0	+	0.25	[0,0.29]	chr21	794612	33	INTRON	INTRON	IFNAR2	ENSG00000159110.21	ENST00000683941.1:ENST00000382264.7:ENST00000342136.9:ENST00000404220.7:ENST00000420068.1:ENST00000342101.7:ENST00000382238.6:ENST00000413881.5:ENST00000443073.5:ENST00000447980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	91	2	2.96057	4.59258	6.22459	0.0442717	3.85451e-4	0.140478	0.00727359
chr2	69814096	69814194	825793	0	+	0.377551	(0.36,0.39]	chr2	93042	10	INTRON	INTRON	ANXA4	ENSG00000196975.16	ENST00000477632.5:ENST00000409920.5:ENST00000635311.1:ENST00000394295.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.48559	4.592455	4.69932	0.0877431	0.036329	0.183437	0.139793
chr2	86557536	86557636	1213826	0	-	0.39	(0.36,0.39]	chr2	130765	148	INTRON	INTRON	CHMP3	ENSG00000115561.16	ENST00000263856.9:ENST00000409727.5:ENST00000409225.2:ENST00000393773.7:ENST00000486404.5:ENST00000485465.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.48559	4.592455	4.69932	0.0877431	0.036329	0.183437	0.139793
chr8	9776149	9776249	3754940	0	+	0.39	(0.36,0.39]	chr8	360889	1	SS3_PROX	SS3_PROX:INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.48559	4.592455	4.69932	0.0877431	0.036329	0.183437	0.139793
chr1	27488585	27488685	431237	0	-	0.39	(0.36,0.39]	chr1	50973	593	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	1	103	2	3.31404	4.59244	5.87084	0.0343432	0.00196738	0.12575	0.022768300000000002
chr21	45508855	45508955	7631400	0	+	0.66	(0.58,1]	chr21	797836	1	SS3_PROX	SS3_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9:ENST00000423214.1:ENST00000473212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	85	2	2.84993	4.59215	6.33437	0.0297842	0.00276493	0.126591	0.0332418
chr7	47355119	47355219	3587342	0	-	0.63	(0.58,1]	chr7	346030	84	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.35051	4.59213	5.83375	0.00953058	0.00751249	0.0650078	0.0576451
chr16	85392035	85392135	6516991	0	+	0.61	(0.58,1]	chr16	646391	327	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.29454	4.591995	4.88945	0.0388928	0.0305531	0.131324	0.126768
chr19	1289685	1289784	7186901	0	+	0.636364	(0.58,1]	chr19	731132	30	INTRON	INTRON	EFNA2	ENSG00000099617.4	ENST00000215368.4	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.29454	4.591995	4.88945	0.0388928	0.0305531	0.131324	0.126768
chr3	13057714	13057814	1689716	0	-	0.59	(0.58,1]	chr3	176555	47	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.29454	4.591995	4.88945	0.0388928	0.0305531	0.131324	0.126768
chr4	677721	677821	1993625	0	+	0.63	(0.58,1]	chr4	203045	4	SS3_PROX	SS3_PROX:INTRON	MYL5	ENSG00000215375.7	ENST00000506838.5:ENST00000505477.5:ENST00000503300.5:ENST00000400159.7:ENST00000511290.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.29454	4.591995	4.88945	0.0388928	0.0305531	0.131324	0.126768
chr5	139650889	139650988	2549669	0	+	0.646465	(0.58,1]	chr5	253164	15	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.29454	4.591995	4.88945	0.0388928	0.0305531	0.131324	0.126768
chr16	69983057	69983157	6613047	0	-	0.52	(0.485,0.523]	chr16	662027	3	SS3_PROX	SS3_PROX:INTRON	PDXDC2P-NPIPB14P:NPIPB14P	ENSG00000196696.13:ENSG00000226232.8	ENST00000531894.5:ENST00000530079.5:ENST00000532298.5:ENST00000525562.5	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript:transcribed_unprocessed_pseudogene	0	37	2	4.33772	4.591915	4.84611	0.0608067	0.03818	0.158506	0.140822
chr15	58715676	58715776	6279126	0	-	0.47	(0.45,0.485]	chr15	618755	79	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1:ENST00000560608.5:ENST00000561149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	99	2	3.25658	4.591815	5.92705	0.0347918	0.00129636	0.126561	0.0170746
chr11	57308094	57308194	5038298	0	-	0.43	(0.419,0.45]	chr11	488043	3	SS5_PROX	SS5_PROX:INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.56048	4.5916049999999995	4.62273	0.103601	0.0337332	0.197541	0.133139
chr18	45901939	45902036	7153464	0	-	0.43299	(0.419,0.45]	chr18	727254	9	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EPG5	ENSG00000152223.16	ENST00000696483.1:ENST00000696484.1:ENST00000282041.11:ENST00000587884.2:ENST00000590884.6:ENST00000592272.6:ENST00000696485.1:ENST00000696489.1:ENST00000586655.2:ENST00000696490.1:ENST00000696482.1:ENST00000585906.5:ENST00000696785.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.56048	4.5916049999999995	4.62273	0.103601	0.0337332	0.197541	0.133139
chr2	171082008	171082108	1313394	0	-	0.43	(0.419,0.45]	chr2	140640	3	SS3_PROX	SS3_PROX:INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000409443.6:ENST00000413010.5:ENST00000486857.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.56048	4.5916049999999995	4.62273	0.103601	0.0337332	0.197541	0.133139
chr6	8579846	8579946	2842006	0	+	0.42	(0.419,0.45]	chr6	278308	20	INTRON	INTRON	HULC	ENSG00000285219.3	ENST00000643788.1:ENST00000643036.1:ENST00000643311.1:ENST00000646792.1:ENST00000644441.1:ENST00000647052.1:ENST00000645758.1:ENST00000646718.1:ENST00000646295.1:ENST00000645344.1:ENST00000643058.1:ENST00000643126.1:ENST00000645017.1:ENST00000643083.1:ENST00000643953.1:ENST00000642458.1:ENST00000647365.1:ENST00000642665.1:ENST00000647306.1:ENST00000643136.1:ENST00000646876.1:ENST00000647466.1:ENST00000646706.1:ENST00000643259.1:ENST00000644610.1:ENST00000646007.1:ENST00000645970.1:ENST00000642168.1:ENST00000646073.1:ENST00000646431.1:ENST00000644892.1:ENST00000644654.1:ENST00000644800.1:ENST00000645486.1:ENST00000643414.1:ENST00000646490.1:ENST00000643889.1:ENST00000644837.1:ENST00000646403.1:ENST00000645474.1:ENST00000645925.1:ENST00000644363.1:ENST00000645365.1:ENST00000642798.1:ENST00000642357.1:ENST00000644248.1:ENST00000645976.1:ENST00000643985.1:ENST00000647135.1:ENST00000643571.1:ENST00000642340.1:ENST00000642345.1:ENST00000642760.1:ENST00000642622.1:ENST00000646749.1:ENST00000645750.1:ENST00000645321.1:ENST00000646043.1:ENST00000646981.1:ENST00000646996.1:ENST00000645047.1:ENST00000645379.1:ENST00000645464.1:ENST00000642163.1:ENST00000643545.1:ENST00000643431.1:ENST00000645087.1:ENST00000643415.1:ENST00000645863.1:ENST00000646758.1:ENST00000644111.1:ENST00000647039.1:ENST00000644605.1:ENST00000642534.1:ENST00000645747.1:ENST00000646774.1:ENST00000646231.1:ENST00000646377.1:ENST00000643473.1:ENST00000646868.1:ENST00000645322.1	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.56048	4.5916049999999995	4.62273	0.103601	0.0337332	0.197541	0.133139
chr12	65895859	65895959	5256161	0	+	0.42	(0.419,0.45]	chr12	512313	136	INTRON	INTRON	HMGA2	ENSG00000149948.14	ENST00000354636.7:ENST00000536545.5:ENST00000403681.7:ENST00000541363.5:ENST00000393577.7:ENST00000539662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	88	2	3.90437	4.591525	5.27868	0.0457732	0.00396391	0.142336	0.0368027
chr12	118189506	118189606	5516849	0	-	0.41	(0.39,0.419]	chr12	543173	3	SS5_PROX	SS5_PROX:INTRON	TAOK3	ENSG00000135090.14	ENST00000392533.8:ENST00000419821.6:ENST00000537305.5:ENST00000537952.1:ENST00000540561.5:ENST00000537822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.48504	4.5915099999999995	4.69798	0.088901	0.0364893	0.183874	0.139793
chr6	167042818	167042918	3071848	0	+	0.43	(0.419,0.45]	chr6	298688	28	UTR3	UTR3:EXON_MRNA:INTRON	CEP43:ENSG00000272980	ENSG00000213066.13:ENSG00000272980.4	ENST00000366847.9:ENST00000609590.1:ENST00000646989.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:processed_transcript	1	104	2	2.94439	4.590775	6.23716	0.062072	8.82327e-4	0.15958	0.0129974
chr2	202653985	202654085	996335	0	+	0.52	(0.485,0.523]	chr2	109362	178	INTRON	INTRON	FAM117B	ENSG00000138439.12	ENST00000392238.3:ENST00000481658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	102	2	3.60466	4.589945	5.57523	0.0185431	0.00274261	0.0929479	0.028553
chr1	27800482	27800581	72120	0	+	0.434343	(0.419,0.45]	chr1	8164	65	INTRON	INTRON	STX12	ENSG00000117758.14	ENST00000373943.9:ENST00000440806.2:ENST00000468761.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	39	2	4.19215	4.58991	4.98767	0.0669167	0.0617113	0.18013	0.16272
chr6	32155587	32155687	2895630	0	+	0.57	(0.523,0.58]	chr6	283490	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PPT2:PPT2-EGFL8	ENSG00000221988.13:ENSG00000258388.7	ENST00000414204.5:ENST00000361568.6:ENST00000478521.5:ENST00000395523.5:ENST00000428388.6:ENST00000585246.5:ENST00000375137.6:ENST00000375143.6:ENST00000324816.11:ENST00000424499.1:ENST00000493548.5:ENST00000422437.5:ENST00000436118.2:ENST00000453656.6:ENST00000583227.5:ENST00000465047.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	80	2	3.35934	4.589865	5.82039	0.0139724	0.0113252	0.0805959	0.071894
chr15	64478117	64478217	6131114	0	+	0.38	(0.36,0.39]	chr15	603258	169	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000416172.1	protein_coding	protein_coding	protein_coding	protein_coding	3	318	2	4.07354	4.589805	5.10607	0.00459048	1.49522e-4	0.044084	0.00367667
chr1	45096231	45096331	463479	0	-	0.42	(0.419,0.45]	chr1	55667	76	INTRON	INTRON	ZSWIM5	ENSG00000162415.7	ENST00000359600.6:ENST00000464588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	150	2	3.0754	4.58975	6.1041	0.027848	0.00123471	0.113159	0.0164614
chr6	166332997	166333096	3301403	0	-	0.494949	(0.485,0.523]	chr6	319660	12	INTRON	INTRON	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000478705.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	80	2	3.38908	4.589375	5.78967	0.0146211	0.0107186	0.0826064	0.0700744
chr17	80224636	80224736	6806865	0	+	0.41	(0.39,0.419]	chr17	687275	9	INTRON	INTRON	SLC26A11	ENSG00000181045.15	ENST00000361193.8:ENST00000546047.6:ENST00000411502.7:ENST00000571888.5:ENST00000576126.5:ENST00000572725.5:ENST00000571564.5:ENST00000571176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	104	2	3.37579	4.589275	5.80276	0.031519899999999997	0.00233691	0.120781	0.0257208
chr10	73706765	73706864	4716773	0	-	0.535354	(0.523,0.58]	chr10	449734	13	INTRON	INTRON	BMS1P4:ENSG00000272140	ENSG00000271816.1:ENSG00000272140.2	ENST00000580790.1:ENST00000415917.2:ENST00000580623.1	lncRNA	lncRNA	lncRNA	lncRNA	2	109	2	3.48688	4.589225	5.69157	0.0172851	0.00280274	0.0897247	0.0289791
chr1	214395582	214395678	658365	0	-	0.46875	(0.45,0.485]	chr1	77656	2	INTRON	INTRON	PTPN14	ENSG00000152104.12	ENST00000366956.10:ENST00000543945.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.22352	4.58866	4.9538	0.0569772	0.0496712	0.160725	0.154343
chr11	66749314	66749413	4877365	0	+	0.454545	(0.45,0.485]	chr11	469641	4	INTRON	INTRON	C11orf80	ENSG00000173715.18	ENST00000534325.5:ENST00000524551.5:ENST00000525908.6:ENST00000540737.7:ENST00000527634.5:ENST00000527368.5:ENST00000531400.6:ENST00000642265.1:ENST00000532565.6:ENST00000525449.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.22352	4.58866	4.9538	0.0569772	0.0496712	0.160725	0.154343
chr2	86761036	86761136	846255	0	+	0.32	(0.29,0.33]	chr2	95479	71	INTRON	INTRON	RMND5A	ENSG00000153561.13	ENST00000283632.5	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	3.69617	4.58862	5.48107	0.0222022	0.00527084	0.101857	0.044517
chr19	37779244	37779343	7375356	0	-	0.494949	(0.485,0.523]	chr19	764630	3	SS5_PROX	SS5_PROX:INTRON	ZNF573	ENSG00000189144.15	ENST00000589632.5:ENST00000392138.5:ENST00000536220.7:ENST00000586155.5:ENST00000585724.5:ENST00000378445.8:ENST00000591516.6:ENST00000588218.1:ENST00000494605.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	97	2	3.30265	4.588480000000001	5.87431	0.0306642	0.00127835	0.119264	0.0168904
chr8	17567612	17567711	3763723	0	+	0.373737	(0.36,0.39]	chr8	361565	26	UTR3	UTR3:EXON_MRNA	SLC7A2	ENSG00000003989.18	ENST00000494857.6:ENST00000470360.5:ENST00000004531.14:ENST00000398090.3	protein_coding	protein_coding	protein_coding	protein_coding	4	156	2	2.46943	4.58831	6.70719	0.0178074	0.00423228	0.0943752	0.0422099
chr17	36512257	36512357	6889670	0	-	0.55	(0.523,0.58]	chr17	699507	2	SS5_PROX	SS5_PROX:INTRON	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000612097.1:ENST00000620413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.5249	4.588235	4.65157	0.0787008	0.0266135	0.175203	0.118113
chr8	143486646	143486746	4096459	0	-	0.57	(0.523,0.58]	chr8	389272	13	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6:ENST00000528401.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.5249	4.588235	4.65157	0.0787008	0.0266135	0.175203	0.118113
chr2	233166321	233166421	1058289	0	+	0.58	(0.523,0.58]	chr2	115120	15	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493078.1:ENST00000472517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	79	2	3.55341	4.587995	5.62258	0.0193313	0.00716661	0.0954446	0.0541871
chr6	42081173	42081273	2913681	0	+	0.57	(0.523,0.58]	chr6	285999	15	UTR3	UTR3:EXON_MRNA:INTRON	TAF8	ENSG00000137413.17	ENST00000372982.8:ENST00000456846.6:ENST00000372977.8:ENST00000688562.1:ENST00000687266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	79	2	3.55341	4.587995	5.62258	0.0193313	0.00716661	0.0954446	0.0541871
chr1	148574464	148574551	582455	0	-	0.482759	(0.45,0.485]	chr1	67136	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF14	ENSG00000270629.7	ENST00000619423.4:ENST00000614999.4:ENST00000621066.4:ENST00000611826.4:ENST00000616120.4:ENST00000621070.4	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.11446	4.5879200000000004	5.06138	0.0592571	0.0492008	0.176157	0.146142
chr11	43362104	43362203	4843705	0	+	0.474747	(0.45,0.485]	chr11	463315	26	INTRON	INTRON	TTC17	ENSG00000052841.15	ENST00000039989.9:ENST00000299240.10:ENST00000534347.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.11446	4.5879200000000004	5.06138	0.0592571	0.0492008	0.176157	0.146142
chr17	44429778	44429877	6912113	0	-	0.474747	(0.45,0.485]	chr17	703814	49	INTRON	INTRON	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000335500.8:ENST00000635257.1:ENST00000587228.5:ENST00000585614.1:ENST00000590041.5:ENST00000586265.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	39	2	4.11446	4.5879200000000004	5.06138	0.0592571	0.0492008	0.176157	0.146142
chr22	25488523	25488622	7701429	0	+	0.464646	(0.45,0.485]	chr22	805972	270	INTRON	INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000686640.1:ENST00000509460.3:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	39	2	4.11446	4.5879200000000004	5.06138	0.0592571	0.0492008	0.176157	0.146142
chr20	32845024	32845123	7457284	0	+	0.414141	(0.39,0.419]	chr20	776342	48	INTRON	INTRON	MAPRE1	ENSG00000101367.9	ENST00000375571.6	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	3.93346	4.58764	5.24182	0.0441194	0.00350435	0.140174	0.0339021
chr17	80892869	80892969	6812405	0	+	0.48	(0.45,0.485]	chr17	687923	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RPTOR	ENSG00000141564.15	ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	85	2	4.01376	4.587625	5.16149	0.0427653	0.0024644	0.13762	0.0265925
chr6	145721546	145721644	3285556	0	-	0.387755	(0.36,0.39]	chr6	317407	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EPM2A	ENSG00000112425.16	ENST00000638717.1:ENST00000639423.1:ENST00000639049.1:ENST00000639799.1:ENST00000367519.9:ENST00000638554.1:ENST00000611340.5:ENST00000435470.2:ENST00000638262.1:ENST00000640351.1:ENST00000640980.1:ENST00000640297.1:ENST00000640898.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	91	2	4.12567	4.58758	5.04949	0.0563927	0.00215781	0.154188	0.024213
chr9	13249099	13249199	4277899	0	-	0.32	(0.29,0.33]	chr9	408709	9	INTRON	INTRON	MPDZ	ENSG00000107186.17	ENST00000319217.12:ENST00000541718.5:ENST00000536827.5:ENST00000447879.6:ENST00000546205.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.51618	4.58743	4.65868	0.0735584	0.0285091	0.17026	0.123012
chr17	30391619	30391719	6710923	0	+	0.47	(0.45,0.485]	chr17	673915	60	INTRON	INTRON	CPD	ENSG00000108582.12	ENST00000225719.9:ENST00000543464.6	protein_coding	protein_coding	protein_coding	protein_coding	1	81	2	3.42543	4.58728	5.74913	0.017574	0.0103881	0.0906595	0.0682598
chr13	97339425	97339524	5631978	0	+	0.494949	(0.485,0.523]	chr13	553188	46	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	388	2	3.95662	4.587225	5.21783	0.00441349	1.60093e-5	0.043071	7.1852e-4
chr9	137570326	137570426	4435767	0	-	0.46	(0.45,0.485]	chr9	424466	48	INTRON	INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000475100.5:ENST00000472113.5:ENST00000485189.5:ENST00000467768.5:ENST00000477690.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	87	2	4.11205	4.586715	5.06138	0.0492008	0.00190576	0.146142	0.0222917
chr16	67916077	67916176	6473559	0	+	0.50505	(0.485,0.523]	chr16	642897	60	INTRON	INTRON	PSKH1	ENSG00000159792.10	ENST00000291041.6	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.52142	4.5867000000000004	4.65198	0.0783889	0.0273555	0.175203	0.119337
chr17	38745868	38745967	6895634	0	-	0.515152	(0.485,0.523]	chr17	700401	51	INTRON	INTRON	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000611883.4:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.52142	4.5867000000000004	4.65198	0.0783889	0.0273555	0.175203	0.119337
chr17	57478678	57478778	6761999	0	+	0.49	(0.485,0.523]	chr17	682137	336	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.52142	4.5867000000000004	4.65198	0.0783889	0.0273555	0.175203	0.119337
chr2	32680621	32680721	751020	0	+	0.5	(0.485,0.523]	chr2	87659	13	INTRON	INTRON	TTC27	ENSG00000018699.13	ENST00000317907.9:ENST00000647819.1:ENST00000454690.1:ENST00000438654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.52142	4.5867000000000004	4.65198	0.0783889	0.0273555	0.175203	0.119337
chr2	45597051	45597151	1139363	0	-	0.51	(0.485,0.523]	chr2	124672	109	INTRON	INTRON	SRBD1	ENSG00000068784.13	ENST00000263736.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.52142	4.5867000000000004	4.65198	0.0783889	0.0273555	0.175203	0.119337
chr20	32132212	32132312	7454396	0	+	0.52	(0.485,0.523]	chr20	775905	157	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000442842.5:ENST00000450829.5:ENST00000217315.9:ENST00000417389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.52142	4.5867000000000004	4.65198	0.0783889	0.0273555	0.175203	0.119337
chr22	42888442	42888542	7823008	0	-	0.52	(0.485,0.523]	chr22	820584	4	SS5_PROX	SS5_PROX:INTRON	PACSIN2	ENSG00000100266.19	ENST00000337959.8:ENST00000263246.8:ENST00000407585.5:ENST00000403744.7:ENST00000402229.5:ENST00000634914.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.52142	4.5867000000000004	4.65198	0.0783889	0.0273555	0.175203	0.119337
chr6	144301985	144302084	3020027	0	+	0.50505	(0.485,0.523]	chr6	295138	97	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.52142	4.5867000000000004	4.65198	0.0783889	0.0273555	0.175203	0.119337
chr7	77708237	77708337	3400425	0	+	0.5	(0.485,0.523]	chr7	328497	105	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.52142	4.5867000000000004	4.65198	0.0783889	0.0273555	0.175203	0.119337
chr7	151113033	151113130	3515670	0	+	0.505155	(0.485,0.523]	chr7	339365	4	INTRON	INTRON	AGAP3	ENSG00000133612.19	ENST00000490097.5:ENST00000463381.5:ENST00000397238.7:ENST00000622464.4:ENST00000479901.5:ENST00000473312.5:ENST00000469901.5:ENST00000476375.5:ENST00000492234.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.52142	4.5867000000000004	4.65198	0.0783889	0.0273555	0.175203	0.119337
chrX	1447581	1447680	7965969	0	-	0.515152	(0.485,0.523]	chrX	834314	49	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9:ENST00000474865.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.52142	4.5867000000000004	4.65198	0.0783889	0.0273555	0.175203	0.119337
chr7	220650	220750	3305861	0	+	0.68	(0.58,1]	chr7	320161	113	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	2	119	2	2.85453	4.586365	6.3182	0.0251699	1.74994e-4	0.107898	0.00410754
chr17	72528130	72528229	6963588	0	-	0.575758	(0.523,0.58]	chr17	710377	12	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	3	135	2	3.38275	4.5859950000000005	5.78924	0.0147166	0.00202474	0.0826843	0.023267
chr15	33933435	33933535	6213631	0	-	0.49	(0.485,0.523]	chr15	611807	478	INTRON	INTRON	AVEN	ENSG00000169857.9	ENST00000675287.1:ENST00000306730.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	86	2	4.15438	4.5857849999999996	5.01719	0.0480495	0.00156066	0.144601	0.0194067
chr4	3369678	3369778	2005133	0	+	0.39	(0.36,0.39]	chr4	204663	263	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	86	2	3.88364	4.58571	5.28778	0.0407706	0.00394555	0.135868	0.0367806
chr6	668246	668346	3078849	0	-	0.54	(0.523,0.58]	chr6	299429	106	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9:ENST00000443083.5	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	3.65844	4.5854550000000005	5.51247	0.0230387	0.00554418	0.102982	0.0456911
chr13	97465937	97466037	5632858	0	+	0.4	(0.39,0.419]	chr13	553252	16	UTR3	UTR3:EXON_MRNA	RAP2A	ENSG00000125249.7	ENST00000245304.5	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	3.22582	4.58542	5.94502	0.0176855	0.0155393	0.093839	0.0849828
chr11	12813623	12813723	4803038	0	+	0.44	(0.419,0.45]	chr11	460563	488	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.29342	4.5847	4.87598	0.0768574	0.0526662	0.174882	0.167062
chr15	57475488	57475588	6115283	0	+	0.45	(0.419,0.45]	chr15	601853	132	INTRON	INTRON	CGNL1	ENSG00000128849.11	ENST00000281282.6	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.29342	4.5847	4.87598	0.0768574	0.0526662	0.174882	0.167062
chr2	148389100	148389200	917057	0	+	0.43	(0.419,0.45]	chr2	102587	416	INTRON	INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000638043.2:ENST00000636620.1:ENST00000478804.3:ENST00000627651.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.29342	4.5847	4.87598	0.0768574	0.0526662	0.174882	0.167062
chr21	46642638	46642737	7634713	0	+	0.434343	(0.419,0.45]	chr21	798554	53	INTRON	INTRON	PRMT2	ENSG00000160310.19	ENST00000451211.6:ENST00000458387.6:ENST00000397638.6:ENST00000291705.11:ENST00000397637.5:ENST00000334494.8:ENST00000355680.8:ENST00000397628.5:ENST00000440086.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.29342	4.5847	4.87598	0.0768574	0.0526662	0.174882	0.167062
chr22	25619829	25619929	7702312	0	+	0.44	(0.419,0.45]	chr22	806000	150	INTRON	INTRON	GRK3	ENSG00000100077.16	ENST00000324198.11:ENST00000455558.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.29342	4.5847	4.87598	0.0768574	0.0526662	0.174882	0.167062
chr5	42824541	42824641	2651685	0	-	0.44	(0.419,0.45]	chr5	263184	128	INTRON	INTRON	SELENOP	ENSG00000250722.6	ENST00000506577.5:ENST00000514218.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.29342	4.5847	4.87598	0.0768574	0.0526662	0.174882	0.167062
chr6	157428942	157429042	3054319	0	+	0.42	(0.419,0.45]	chr6	297167	463	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.29342	4.5847	4.87598	0.0768574	0.0526662	0.174882	0.167062
chr8	11713526	11713626	3759591	0	+	0.47	(0.45,0.485]	chr8	361064	42	INTRON	INTRON	GATA4	ENSG00000136574.19	ENST00000528712.5:ENST00000526716.5:ENST00000532059.6:ENST00000335135.8:ENST00000622443.3	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.49786	4.584625	4.67139	0.101311	0.0223378	0.196131	0.108193
chr9	123525492	123525592	4397831	0	-	0.46	(0.45,0.485]	chr9	419652	395	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.49786	4.584625	4.67139	0.101311	0.0223378	0.196131	0.108193
chr9	133734503	133734603	4427928	0	-	0.59	(0.58,1]	chr9	423135	3	SS3_PROX	SS3_PROX:INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000427237.6:ENST00000298628.6	protein_coding	protein_coding	protein_coding	protein_coding	2	98	2	3.10233	4.58416	6.06599	0.00607723	0.00477081	0.0487928	0.0450109
chr1	45552035	45552135	115332	0	+	0.46	(0.45,0.485]	chr1	14403	2	SS3_PROX	SS3_PROX:INTRON	AKR1A1	ENSG00000117448.14	ENST00000372070.7:ENST00000621846.4:ENST00000434299.5:ENST00000351829.9:ENST00000496999.5:ENST00000476957.5:ENST00000481885.5:ENST00000471651.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	135	2	2.82397	4.584095	6.34422	0.0358512	4.24458e-4	0.127853	0.00777807
chr2	10367577	10367677	719075	0	+	0.4	(0.39,0.419]	chr2	84032	128	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	102	2	3.23341	4.584085	5.93476	0.0391493	0.00169249	0.13192	0.0204799
chr17	77413119	77413219	6804502	0	+	0.38	(0.36,0.39]	chr17	686779	76	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	139	2	2.48618	4.58397	6.68176	0.0641588	2.3726e-4	0.161669	0.0051158
chr14	91220242	91220342	5899558	0	+	0.48	(0.45,0.485]	chr14	576432	4	SS3_PROX	SS3_PROX:INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000522816.1:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	81	2	3.38668	4.58382	5.78096	0.0166968	0.0113463	0.0884836	0.0719708
chr10	34573450	34573550	4669388	0	-	0.49	(0.485,0.523]	chr10	445529	559	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	1	96	2	3.1954	4.583805	5.97221	0.0364043	9.86421e-4	0.128173	0.0140716
chr14	89255111	89255211	6026649	0	-	0.44	(0.419,0.45]	chr14	591432	239	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	85	2	3.31626	4.58373	5.8512	0.0201381	0.0150971	0.0973365	0.0857427
chr6	520079	520179	3077341	0	-	0.66	(0.58,1]	chr6	299297	200	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	3.85993	4.5837	5.30747	0.0196049	0.00251049	0.0955413	0.026941
chr7	76995835	76995934	3398758	0	+	0.59596	(0.58,1]	chr7	328286	51	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	1	92	2	3.66231	4.58364	5.50497	0.0122106	0.00187297	0.0752279	0.0219434
chr16	24821128	24821218	6426517	0	+	0.422222	(0.419,0.45]	chr16	635850	4	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000395799.8:ENST00000315183.11:ENST00000491718.5:ENST00000450465.6:ENST00000569098.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.47684	4.583585	4.69033	0.0958674	0.0389508	0.189038	0.142578
chr16	85313974	85314074	6516209	0	+	0.42	(0.419,0.45]	chr16	646381	49	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.47684	4.583585	4.69033	0.0958674	0.0389508	0.189038	0.142578
chr2	84990840	84990940	842729	0	+	0.44	(0.419,0.45]	chr2	94831	182	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.47684	4.583585	4.69033	0.0958674	0.0389508	0.189038	0.142578
chr2	108537388	108537487	870979	0	+	0.424242	(0.419,0.45]	chr2	98283	24	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.47684	4.583585	4.69033	0.0958674	0.0389508	0.189038	0.142578
chr20	41492019	41492119	7563546	0	-	0.42	(0.419,0.45]	chr20	790040	2	SS3_PROX	SS3_PROX:INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000440697.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.47684	4.583585	4.69033	0.0958674	0.0389508	0.189038	0.142578
chr6	158574713	158574812	3064043	0	+	0.444444	(0.419,0.45]	chr6	297693	8	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.47684	4.583585	4.69033	0.0958674	0.0389508	0.189038	0.142578
chr10	132565049	132565149	4617111	0	+	0.27	[0,0.29]	chr10	441139	265	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.54275	4.583584999999999	4.62442	0.0681032	0.019938	0.164448	0.100864
chr16	81628488	81628588	6509582	0	+	0.47	(0.45,0.485]	chr16	645926	64	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	1	82	2	3.82378	4.583394999999999	5.34301	0.0328801	0.0039984	0.122593	0.0370532
chr2	3459317	3459406	711026	0	+	0.516854	(0.485,0.523]	chr2	83176	5	INTRON	INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000479955.5:ENST00000497597.5:ENST00000473348.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	108	2	2.87613	4.583095	6.29006	0.013222	0.00613935	0.0793577	0.0517628
chr11	70582229	70582329	5060095	0	-	0.6	(0.58,1]	chr11	492663	789	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	74	2	3.39676	4.58305	5.76934	0.0085026	0.00849371	0.0617717	0.0608246
chr3	196904844	196904944	1667849	0	+	0.3	(0.29,0.33]	chr3	174899	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SENP5	ENSG00000119231.11	ENST00000445299.6:ENST00000323460.10:ENST00000419026.5:ENST00000489744.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	95	2	3.23058	4.58275	5.93492	0.0331025	0.00115909	0.123313	0.0157704
chr3	48031809	48031909	1765383	0	-	0.46	(0.45,0.485]	chr3	182011	155	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	1	82	2	3.26377	4.58272	5.90167	0.0149252	0.0137135	0.0848525	0.0799457
chr2	78096741	78096841	1208417	0	-	0.51	(0.485,0.523]	chr2	130071	1565	INTRON	INTRON	ENSG00000227088	ENSG00000227088.2	ENST00000667782.1	lncRNA	lncRNA	lncRNA	lncRNA	1	79	2	3.57804	4.582635	5.58723	0.0203514	0.00685872	0.0979211	0.0526888
chr6	117585746	117585846	3242214	0	-	0.48	(0.45,0.485]	chr6	314277	63	INTRON	INTRON	GOPC	ENSG00000047932.14	ENST00000052569.10:ENST00000368498.7:ENST00000535237.2	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.5725	4.582375	4.59225	0.0926859	0.0259502	0.188571	0.116361
chrX	27377687	27377786	8000627	0	-	0.484848	(0.45,0.485]	chrX	836683	12	INTRON	INTRON	ENSG00000228933	ENSG00000228933.8	ENST00000422048.5:ENST00000669376.1:ENST00000670197.1:ENST00000670482.1:ENST00000671147.1:ENST00000608735.2	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	4.5725	4.582375	4.59225	0.0926859	0.0259502	0.188571	0.116361
chrX	72470080	72470178	8063188	0	-	0.479592	(0.45,0.485]	chrX	841379	17	INTRON	INTRON	HDAC8	ENSG00000147099.21	ENST00000373583.6:ENST00000373573.9:ENST00000648850.1:ENST00000648452.1:ENST00000649097.1:ENST00000647886.1:ENST00000648855.1:ENST00000647654.1:ENST00000648939.1:ENST00000648504.1:ENST00000648459.1:ENST00000373589.9:ENST00000650604.1:ENST00000647594.1:ENST00000647980.1:ENST00000647859.1:ENST00000650076.1:ENST00000648731.1:ENST00000649181.1:ENST00000649274.1:ENST00000650471.1:ENST00000647641.1:ENST00000649543.1:ENST00000373568.7:ENST00000648139.1:ENST00000648834.1:ENST00000648711.1:ENST00000436675.6:ENST00000647606.1:ENST00000415409.6:ENST00000478743.2:ENST00000648298.1:ENST00000648870.1:ENST00000649116.1:ENST00000649752.1:ENST00000647718.1:ENST00000649242.1:ENST00000649518.1:ENST00000648285.1:ENST00000412342.6:ENST00000373571.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.5725	4.582375	4.59225	0.0926859	0.0259502	0.188571	0.116361
chr6	157392560	157392660	3053955	0	+	0.4	(0.39,0.419]	chr6	297167	99	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	1	115	2	3.80298	4.582265	5.36155	0.0159069	0.00648185	0.0860271	0.0503748
chr10	73706567	73706666	4716771	0	-	0.454545	(0.45,0.485]	chr10	449734	11	INTRON	INTRON	BMS1P4:ENSG00000272140	ENSG00000271816.1:ENSG00000272140.2	ENST00000580790.1:ENST00000415917.2:ENST00000580623.1	lncRNA	lncRNA	lncRNA	lncRNA	1	104	2	2.57593	4.581995	6.58806	0.093234	2.14087e-4	0.188571	0.00475596
chr13	75391990	75392090	5727104	0	-	0.38	(0.36,0.39]	chr13	561722	148	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	1	83	2	3.49254	4.581910000000001	5.67128	0.023302	0.00987589	0.103669	0.0664239
chr17	57440190	57440290	6761612	0	+	0.6	(0.58,1]	chr17	682129	77	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	73	2	3.68463	4.58151	5.47839	0.0145198	0.00404771	0.0823104	0.0371291
chr2	239343585	239343685	1392146	0	-	0.65	(0.58,1]	chr2	148752	191	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	98	2	3.07041	4.581485	6.09256	0.00661304	0.00452436	0.0512951	0.0436138
chr9	14838353	14838453	4280098	0	-	0.33	(0.29,0.33]	chr9	408973	130	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	81	2	3.24556	4.58141	5.91726	0.0151115	0.010702	0.085778	0.0701493
chr2	216000856	216000956	1369292	0	-	0.34	(0.33,0.36]	chr2	145845	40	INTRON	INTRON	MREG:PECR	ENSG00000118242.16:ENSG00000115425.14	ENST00000263268.11:ENST00000620139.4:ENST00000439791.5:ENST00000424992.5:ENST00000420348.1:ENST00000442122.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.211	4.581315	4.95163	0.0583482	0.0541541	0.167824	0.155373
chr1	169114667	169114766	269854	0	+	0.484848	(0.45,0.485]	chr1	31727	28	INTRON	INTRON	ATP1B1	ENSG00000143153.14	ENST00000367816.5:ENST00000690184.1:ENST00000688755.1:ENST00000692003.1:ENST00000688406.1:ENST00000689522.1:ENST00000691106.1:ENST00000367815.9:ENST00000686702.1:ENST00000685155.1:ENST00000685792.1:ENST00000691753.1:ENST00000494797.2:ENST00000691802.1:ENST00000687745.1:ENST00000685762.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.32491	4.58123	4.83755	0.06646	0.0418883	0.162385	0.149021
chr11	7577938	7578038	4792580	0	+	0.46	(0.45,0.485]	chr11	459339	3	SS5_PROX	SS5_PROX:INTRON	PPFIBP2	ENSG00000166387.14	ENST00000684123.1:ENST00000299492.9:ENST00000527790.5:ENST00000524548.5:ENST00000529575.5:ENST00000533792.5:ENST00000532926.5:ENST00000684215.1:ENST00000650027.1:ENST00000525597.5:ENST00000529021.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.32491	4.58123	4.83755	0.06646	0.0418883	0.162385	0.149021
chr16	81524286	81524386	6508536	0	+	0.47	(0.45,0.485]	chr16	645911	284	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.32491	4.58123	4.83755	0.06646	0.0418883	0.162385	0.149021
chr9	61969920	61970020	4158025	0	+	0.48	(0.45,0.485]	chr9	395242	1	SS3_PROX	SS3_PROX:INTRON	FAM27C	ENSG00000231527.7	ENST00000653087.1:ENST00000660875.1:ENST00000670686.1:ENST00000443347.6:ENST00000668789.1:ENST00000657353.1:ENST00000669747.1:ENST00000662964.1:ENST00000650759.1:ENST00000656926.1:ENST00000655025.1:ENST00000655049.1:ENST00000659299.1:ENST00000651201.1:ENST00000651799.1	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.32491	4.58123	4.83755	0.06646	0.0418883	0.162385	0.149021
chr9	129339894	129339989	4250336	0	+	0.473684	(0.45,0.485]	chr9	404662	6	INTRON	INTRON	LINC01503	ENSG00000233901.7	ENST00000427109.2:ENST00000654735.1:ENST00000654190.1:ENST00000657886.1:ENST00000661745.1:ENST00000436710.6:ENST00000660635.1:ENST00000657651.1:ENST00000665063.2:ENST00000667257.1:ENST00000690929.1:ENST00000654148.1:ENST00000444125.3:ENST00000666671.1:ENST00000660036.1:ENST00000657393.1:ENST00000659864.1	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.32491	4.58123	4.83755	0.06646	0.0418883	0.162385	0.149021
chr16	69704171	69704270	6485442	0	+	0.30303	(0.29,0.33]	chr16	644075	80	UTR3	UTR3:EXON_MRNA	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000393742.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	339	2	4.4896	4.581185	4.67277	0.00236098	8.19816e-5	0.0306624	0.00236018
chr2	134451335	134451435	898761	0	+	0.54	(0.523,0.58]	chr2	101298	26	UTR3	UTR3:EXON_MRNA	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	1	84	2	4.09254	4.581054999999999	5.06957	0.0448011	0.00180302	0.140478	0.0215053
chr15	60490775	60490874	6284414	0	-	0.343434	(0.33,0.36]	chr15	619448	26	UTR3	UTR3:EXON_MRNA	RORA	ENSG00000069667.16	ENST00000335670.11	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.102	4.5806000000000004	5.0592	0.0642879	0.0504445	0.184676	0.148216
chr2	237578343	237578438	1388028	0	-	0.473684	(0.45,0.485]	chr2	148326	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RAB17	ENSG00000124839.13	ENST00000392001.6:ENST00000264601.8:ENST00000477149.5:ENST00000409576.1:ENST00000414278.1:ENST00000409822.1:ENST00000411462.5:ENST00000430445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	243	2	3.26667	4.58055	5.89443	0.00966221	0.00141013	0.0661115	0.0180659
chr17	963103	963203	6826466	0	-	0.39	(0.36,0.39]	chr17	690074	298	INTRON	INTRON	NXN	ENSG00000167693.17	ENST00000336868.8:ENST00000575171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.39677	4.580335	4.7639	0.0811309	0.0422707	0.177951	0.149195
chr17	38208544	38208639	6894936	0	-	0.368421	(0.36,0.39]	chr17	700323	7	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	NPEPPSP1	ENSG00000274487.3	ENST00000649858.2:ENST00000685611.1:ENST00000692748.1:ENST00000685092.1:ENST00000620148.2:ENST00000685084.1:ENST00000690513.1:ENST00000684912.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	37	2	4.39677	4.580335	4.7639	0.0811309	0.0422707	0.177951	0.149195
chr18	35055531	35055630	7045083	0	+	0.363636	(0.36,0.39]	chr18	719361	134	INTRON	INTRON	MAPRE2	ENSG00000166974.13	ENST00000413393.5:ENST00000591734.5:ENST00000589180.5:ENST00000587359.5:ENST00000436190.6:ENST00000588349.6:ENST00000538170.6:ENST00000300249.10:ENST00000588910.5:ENST00000585592.1:ENST00000589699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.39677	4.580335	4.7639	0.0811309	0.0422707	0.177951	0.149195
chr3	170162751	170162851	1954348	0	-	0.38	(0.36,0.39]	chr3	198706	117	INTRON	INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5:ENST00000484931.5:ENST00000479467.5:ENST00000466189.5:ENST00000475729.5:ENST00000474275.5:ENST00000472330.5:ENST00000465896.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.39677	4.580335	4.7639	0.0811309	0.0422707	0.177951	0.149195
chr6	82144941	82145041	3191409	0	-	0.39	(0.36,0.39]	chr6	309379	433	INTRON	INTRON	LINC02542	ENSG00000226453.3	ENST00000667666.1:ENST00000663543.1:ENST00000668303.1	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.39677	4.580335	4.7639	0.0811309	0.0422707	0.177951	0.149195
chr16	85426920	85427020	6517340	0	+	0.53	(0.523,0.58]	chr16	646391	676	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	94	2	2.68276	4.579965	6.47717	0.0464998	0.00439843	0.156036	0.0429852
chr19	34391095	34391195	7243261	0	+	0.54	(0.523,0.58]	chr19	741718	91	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	94	2	2.68276	4.579965	6.47717	0.0464998	0.00439843	0.156036	0.0429852
chr14	89255311	89255411	6026651	0	-	0.42	(0.419,0.45]	chr14	591432	241	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	319	2	3.79874	4.579805	5.36087	0.00839816	8.031e-5	0.0616197	0.00232467
chr10	124935860	124935959	4605605	0	+	0.383838	(0.36,0.39]	chr10	440370	182	INTRON	INTRON	ENSG00000249456	ENSG00000249456.1	ENST00000508096.1	lncRNA	lncRNA	lncRNA	lncRNA	1	83	2	3.59265	4.579594999999999	5.56654	0.0272676	0.00786519	0.112327	0.0576321
chr1	39004341	39004436	93319	0	+	0.357895	(0.33,0.36]	chr1	11025	4	UTR3	UTR3:EXON_MRNA	AKIRIN1	ENSG00000174574.16	ENST00000432648.8:ENST00000372984.8:ENST00000446189.6:ENST00000531822.1	protein_coding	protein_coding	protein_coding	protein_coding	5	507	2	3.5063	4.57956	5.65282	0.00793691	5.99895e-6	0.0596361	3.5765e-4
chr12	132537148	132537248	5352987	0	+	0.61	(0.58,1]	chr12	523670	88	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	2	183	2	4.39644	4.579555	4.76267	0.00271982	1.64538e-4	0.0331692	0.0039392
chr10	79108825	79108924	4532443	0	+	0.626263	(0.58,1]	chr10	432420	392	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.3962	4.5795200000000005	4.76284	0.0471737	0.0250928	0.143232	0.114418
chr11	68362246	68362346	4882581	0	+	0.65	(0.58,1]	chr11	470554	40	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.3962	4.5795200000000005	4.76284	0.0471737	0.0250928	0.143232	0.114418
chr11	68397313	68397413	4882935	0	+	0.65	(0.58,1]	chr11	470578	69	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.3962	4.5795200000000005	4.76284	0.0471737	0.0250928	0.143232	0.114418
chr15	34409633	34409733	6217554	0	-	0.68	(0.58,1]	chr15	612287	15	INTRON	INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000569781.1:ENST00000565885.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.3962	4.5795200000000005	4.76284	0.0471737	0.0250928	0.143232	0.114418
chr16	1355102	1355202	6369729	0	+	0.7	(0.58,1]	chr16	628525	24	INTRON	INTRON	GNPTG	ENSG00000090581.11	ENST00000204679.9:ENST00000526820.5:ENST00000683366.1:ENST00000527876.5:ENST00000527168.6:ENST00000534197.5:ENST00000683887.1:ENST00000529110.2:ENST00000684126.1:ENST00000529957.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.3962	4.5795200000000005	4.76284	0.0471737	0.0250928	0.143232	0.114418
chr18	80033650	80033750	7182846	0	-	0.59	(0.58,1]	chr18	730351	4	SS5_PROX	SS5_PROX:INTRON	TXNL4A	ENSG00000141759.15	ENST00000585474.5:ENST00000592957.1:ENST00000589926.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.3962	4.5795200000000005	4.76284	0.0471737	0.0250928	0.143232	0.114418
chr19	39997269	39997369	7261301	0	+	0.61	(0.58,1]	chr19	744607	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF546	ENSG00000187187.14	ENST00000597363.5:ENST00000596894.5:ENST00000599504.5:ENST00000651981.1:ENST00000593687.5:ENST00000347077.9:ENST00000601138.5:ENST00000600094.5:ENST00000602253.5:ENST00000595225.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.3962	4.5795200000000005	4.76284	0.0471737	0.0250928	0.143232	0.114418
chr22	46291515	46291608	7743266	0	+	0.634409	(0.58,1]	chr22	811892	13	INTRON	INTRON	TTC38	ENSG00000075234.17	ENST00000381031.8:ENST00000451998.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.3962	4.5795200000000005	4.76284	0.0471737	0.0250928	0.143232	0.114418
chr8	143952539	143952637	4098646	0	-	0.673469	(0.58,1]	chr8	389857	18	INTRON	INTRON	PLEC	ENSG00000178209.17	ENST00000436759.6:ENST00000527303.2:ENST00000356346.7:ENST00000354958.6:ENST00000528025.6:ENST00000527096.5:ENST00000685198.1:ENST00000532346.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.3962	4.5795200000000005	4.76284	0.0471737	0.0250928	0.143232	0.114418
chr9	133691319	133691417	4427476	0	-	0.591837	(0.58,1]	chr9	423045	4	INTRON	INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000371868.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.3962	4.5795200000000005	4.76284	0.0471737	0.0250928	0.143232	0.114418
chr7	74365309	74365408	3390942	0	+	0.585859	(0.58,1]	chr7	327282	6	INTRON	INTRON	CLIP2	ENSG00000106665.16	ENST00000223398.11:ENST00000361545.9	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.72143	4.579475	5.43752	0.0156166	0.00366718	0.0849828	0.0346803
chr18	69841876	69841975	7087605	0	+	0.434343	(0.419,0.45]	chr18	722178	6	UTR3	UTR3:EXON_MRNA	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	1	113	2	3.67133	4.579395	5.48746	0.021076	0.00532156	0.0996078	0.0446153
chr8	106692327	106692427	3901698	0	+	0.41	(0.39,0.419]	chr8	372858	2	SS3_PROX	SS3_PROX:INTRON	OXR1	ENSG00000164830.19	ENST00000517566.7:ENST00000531443.6:ENST00000442977.6:ENST00000497705.5:ENST00000435082.1:ENST00000312046.10:ENST00000438229.6:ENST00000517455.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.39622	4.579395	4.76257	0.0822354	0.042449	0.179396	0.149195
chr9	107294665	107294765	4210577	0	+	0.41	(0.39,0.419]	chr9	399873	94	INTRON	INTRON	RAD23B	ENSG00000119318.13	ENST00000419616.5:ENST00000358015.8:ENST00000416373.6:ENST00000442587.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.39622	4.579395	4.76257	0.0822354	0.042449	0.179396	0.149195
chr17	77376082	77376161	6804124	0	+	0.556962	(0.523,0.58]	chr17	686754	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1:ENST00000423034.6:ENST00000590059.5:ENST00000587514.1:ENST00000590586.1:ENST00000592407.1:ENST00000427674.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	79	2	3.72444	4.579275	5.43411	0.026041	0.00470358	0.109673	0.0413976
chr10	28560732	28560831	4469692	0	+	0.454545	(0.45,0.485]	chr10	427649	223	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	134	2	2.76651	4.57912	6.39173	0.039296	3.72107e-4	0.1324	0.00707906
chr10	74695420	74695520	4517145	0	+	0.29	[0,0.29]	chr10	432011	82	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.54061	4.5790500000000005	4.61749	0.061376	0.0235212	0.158506	0.110758
chr3	50175881	50175977	1469162	0	+	0.604167	(0.58,1]	chr3	157432	3	INTRON	INTRON	SEMA3F	ENSG00000001617.12	ENST00000414301.5:ENST00000450338.5:ENST00000413852.5:ENST00000002829.8:ENST00000434342.5:ENST00000420831.1	protein_coding	protein_coding	protein_coding	protein_coding	2	120	2	2.47471	4.578609999999999	6.68251	0.0491463	5.46055e-5	0.146142	0.00175188
chr10	75884524	75884624	4525014	0	+	0.44	(0.419,0.45]	chr10	432292	6	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	84	2	3.52905	4.57855	5.62805	0.0280406	0.00949141	0.113651	0.0650078
chr1	41137383	41137483	453870	0	-	0.34	(0.33,0.36]	chr1	54633	200	INTRON	INTRON	SCMH1	ENSG00000010803.17	ENST00000695335.1:ENST00000372596.5:ENST00000372597.5:ENST00000337495.9:ENST00000372595.5:ENST00000326197.11:ENST00000695336.1:ENST00000456518.3:ENST00000695337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	91	2	4.20526	4.578445	4.95163	0.0583482	0.00163002	0.155373	0.0200818
chr16	85587831	85587931	6518951	0	+	0.62	(0.58,1]	chr16	646396	311	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	2	98	2	3.03776	4.578205	6.11865	0.00720487	0.00429384	0.0543254	0.042386
chr8	73039719	73039819	3842027	0	+	0.43	(0.419,0.45]	chr8	368977	1	SS5_PROX	SS5_PROX:INTRON	TERF1	ENSG00000147601.15	ENST00000517390.2:ENST00000679115.1:ENST00000276603.10:ENST00000678518.1:ENST00000676483.1:ENST00000276602.10:ENST00000678997.1:ENST00000678860.1:ENST00000677031.1:ENST00000678912.1:ENST00000518961.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	106	2	3.39699	4.578175	5.75936	0.0322355	0.00285253	0.121593	0.0294017
chr12	120984558	120984658	5340976	0	+	0.54	(0.523,0.58]	chr12	521546	51	INTRON	INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000400024.6:ENST00000560968.5:ENST00000402929.5:ENST00000535955.5:ENST00000538626.2:ENST00000538646.5:ENST00000541924.5:ENST00000544574.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.43597	4.5775950000000005	4.71922	0.0721601	0.0313935	0.168159	0.127822
chr17	17738752	17738852	6689423	0	+	0.55	(0.523,0.58]	chr17	671344	142	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.43597	4.5775950000000005	4.71922	0.0721601	0.0313935	0.168159	0.127822
chr2	121476233	121476333	1262488	0	-	0.56	(0.523,0.58]	chr2	136083	59	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.43597	4.5775950000000005	4.71922	0.0721601	0.0313935	0.168159	0.127822
chr4	39308235	39308335	2215557	0	-	0.53	(0.523,0.58]	chr4	223799	2	SS5_PROX	SS5_PROX:INTRON	RFC1	ENSG00000035928.17	ENST00000381897.5:ENST00000349703.7:ENST00000504554.1:ENST00000502706.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.43597	4.5775950000000005	4.71922	0.0721601	0.0313935	0.168159	0.127822
chr18	9931309	9931409	7018388	0	+	0.35	(0.33,0.36]	chr18	716806	1	SS3_PROX	SS3_PROX:INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000584796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	82	2	3.69138	4.57738	5.46338	0.0281891	0.00591814	0.114124	0.0478563
chr1	1222643	1222743	380413	0	-	0.58	(0.523,0.58]	chr1	42841	14	INTRON	INTRON	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000403997.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	80	2	3.27377	4.577245	5.88072	0.0137592	0.0126258	0.0814923	0.0761905
chr17	40135251	40135349	6732834	0	+	0.357143	(0.33,0.36]	chr17	677123	10	UTR3	UTR3:EXON_MRNA	MSL1	ENSG00000188895.12	ENST00000398532.9:ENST00000339569.9:ENST00000580086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.49572	4.577205	4.65869	0.103264	0.0248983	0.197541	0.114418
chr17	57544804	57544904	6762663	0	+	0.36	(0.33,0.36]	chr17	682152	147	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1:ENST00000674898.1:ENST00000674574.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.49572	4.577205	4.65869	0.103264	0.0248983	0.197541	0.114418
chr3	188753574	188753673	1657813	0	+	0.343434	(0.33,0.36]	chr3	173832	71	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000471917.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.49572	4.577205	4.65869	0.103264	0.0248983	0.197541	0.114418
chrX	18439293	18439393	7850374	0	+	0.36	(0.33,0.36]	chrX	823295	120	INTRON	INTRON	CDKL5	ENSG00000008086.13	ENST00000379996.7:ENST00000623535.2:ENST00000674046.1:ENST00000635828.1:ENST00000637881.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.49572	4.577205	4.65869	0.103264	0.0248983	0.197541	0.114418
chr14	68974564	68974664	6000102	0	-	0.56	(0.523,0.58]	chr14	588770	3	SS3_PROX	SS3_PROX:INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000683261.1:ENST00000553370.5:ENST00000682602.1:ENST00000556571.1:ENST00000553659.1:ENST00000556203.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	135	2	2.36236	4.57715	6.79194	0.0261999	0.00243746	0.117385	0.0311222
chr1	53778276	53778376	486984	0	-	0.32	(0.29,0.33]	chr1	57978	54	INTRON	INTRON	NDC1	ENSG00000058804.12	ENST00000371429.4	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.42727	4.57681	4.72635	0.0672935	0.0335282	0.163263	0.133139
chr1	70208270	70208370	160303	0	+	0.38	(0.36,0.39]	chr1	18263	21	INTRON	INTRON	SRSF11	ENSG00000116754.14	ENST00000370951.5:ENST00000463877.1:ENST00000687381.1:ENST00000370950.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	107	2	3.57375	4.576615	5.57948	0.0228532	0.00393844	0.102982	0.0367306
chr1	14942823	14942923	43835	0	+	0.51	(0.485,0.523]	chr1	4384	124	INTRON	INTRON	KAZN	ENSG00000189337.17	ENST00000636203.1:ENST00000376030.7:ENST00000491547.1:ENST00000503743.5:ENST00000361144.9:ENST00000400798.6:ENST00000376028.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.43249	4.576065	4.71964	0.0718646	0.0322299	0.168159	0.12988
chr10	132553958	132554058	4617000	0	+	0.5	(0.485,0.523]	chr10	441139	154	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.43249	4.576065	4.71964	0.0718646	0.0322299	0.168159	0.12988
chr13	98366529	98366628	5635915	0	+	0.494949	(0.485,0.523]	chr13	553532	7	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5:ENST00000595817.5:ENST00000595380.5:ENST00000596467.5:ENST00000600032.5:ENST00000601853.5:ENST00000596613.5:ENST00000599040.5:ENST00000602263.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.43249	4.576065	4.71964	0.0718646	0.0322299	0.168159	0.12988
chr16	1586616	1586697	6533733	0	-	0.518519	(0.485,0.523]	chr16	649146	4	SS3_PROX	SS3_PROX:INTRON	IFT140	ENSG00000187535.14	ENST00000426508.7:ENST00000397417.6:ENST00000439987.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.43249	4.576065	4.71964	0.0718646	0.0322299	0.168159	0.12988
chr16	81550680	81550780	6508800	0	+	0.5	(0.485,0.523]	chr16	645911	548	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.43249	4.576065	4.71964	0.0718646	0.0322299	0.168159	0.12988
chr19	57439920	57440018	7297077	0	+	0.520408	(0.485,0.523]	chr19	751501	16	INTRON	INTRON	ZNF749	ENSG00000186230.7	ENST00000334181.5:ENST00000415248.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.43249	4.576065	4.71964	0.0718646	0.0322299	0.168159	0.12988
chr2	3299892	3299992	1081106	0	-	0.49	(0.485,0.523]	chr2	117633	172	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.43249	4.576065	4.71964	0.0718646	0.0322299	0.168159	0.12988
chr2	233167819	233167919	1058304	0	+	0.49	(0.485,0.523]	chr2	115120	30	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493078.1:ENST00000472517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.43249	4.576065	4.71964	0.0718646	0.0322299	0.168159	0.12988
chr20	20468732	20468832	7533885	0	-	0.49	(0.485,0.523]	chr20	786266	562	INTRON	INTRON	RALGAPA2	ENSG00000188559.16	ENST00000202677.12:ENST00000430436.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.43249	4.576065	4.71964	0.0718646	0.0322299	0.168159	0.12988
chr9	134367977	134368077	4261103	0	+	0.6	(0.58,1]	chr9	406311	410	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	73	2	3.48503	4.576005	5.66698	0.0102927	0.006811	0.0684871	0.0524379
chr5	82377256	82377356	2475161	0	+	0.46	(0.45,0.485]	chr5	246898	259	INTRON	INTRON	ATP6AP1L	ENSG00000205464.13	ENST00000508366.5	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript	0	36	2	4.50852	4.57599	4.64346	0.0850039	0.0302873	0.181766	0.126768
chr5	172986101	172986197	2591782	0	+	0.458333	(0.45,0.485]	chr5	257194	18	INTRON	INTRON	ATP6V0E1	ENSG00000113732.9	ENST00000519374.6:ENST00000519911.5:ENST00000265093.4:ENST00000517669.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.50852	4.57599	4.64346	0.0850039	0.0302873	0.181766	0.126768
chr9	134377706	134377805	4261202	0	+	0.484848	(0.45,0.485]	chr9	406321	32	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2:ENST00000356384.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.50852	4.57599	4.64346	0.0850039	0.0302873	0.181766	0.126768
chr16	89307437	89307537	6659886	0	-	0.62	(0.58,1]	chr16	666665	17	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1:ENST00000647539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	87	2	3.02751	4.575975	6.12444	0.0385189	3.17437e-4	0.131324	0.00632787
chr17	39671873	39671968	6898417	0	-	0.578947	(0.523,0.58]	chr17	700782	9	UTR3	UTR3:EXON_MRNA	PGAP3	ENSG00000161395.14	ENST00000579146.5:ENST00000300658.9:ENST00000378011.8:ENST00000309862.10:ENST00000619169.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	213	2	4.54001	4.57583	4.61165	0.00336149	4.1901e-4	0.0370375	0.00771359
chr1	246233523	246233623	703120	0	-	0.44	(0.419,0.45]	chr1	82422	399	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	318	2	4.35488	4.57571	4.79654	0.00678408	1.08027e-4	0.0546626	0.00290098
chr17	38919376	38919476	6730075	0	+	0.63	(0.58,1]	chr17	676475	7	UTR3	UTR3:EXON_MRNA	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000318008.11:ENST00000435347.7	protein_coding	protein_coding	protein_coding	protein_coding	2	122	2	3.1183	4.575505	6.03271	0.0152878	4.18183e-4	0.0849465	0.00770005
chr5	75413591	75413690	2693325	0	-	0.464646	(0.45,0.485]	chr5	266090	21	INTRON	INTRON	CERT1	ENSG00000113163.19	ENST00000646172.1:ENST00000644912.1:ENST00000644072.2:ENST00000644445.1:ENST00000261415.12:ENST00000642809.1:ENST00000647512.2:ENST00000380494.10:ENST00000642556.1:ENST00000646713.1:ENST00000644516.1:ENST00000645866.1:ENST00000645483.1:ENST00000642225.1:ENST00000405807.10:ENST00000642488.1:ENST00000643780.2:ENST00000646511.1:ENST00000643158.1:ENST00000644377.1:ENST00000646302.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	82	2	3.22036	4.57535	5.93034	0.016408	0.0130794	0.0911382	0.0782396
chr10	79219573	79219673	4533557	0	+	0.5	(0.485,0.523]	chr10	432457	29	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	3	128	2	2.69272	4.575325	6.45793	0.0123762	0.00452302	0.0765576	0.0436138
chr3	66008473	66008571	1815566	0	-	0.520408	(0.485,0.523]	chr3	187316	47	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	127	2	2.86059	4.575325	6.29006	0.0082018	0.00613935	0.0591998	0.0517628
chr12	89486835	89486935	5469204	0	-	0.36	(0.33,0.36]	chr12	537710	11	INTRON	INTRON	POC1B	ENSG00000139323.14	ENST00000313546.8:ENST00000393179.8:ENST00000549035.1:ENST00000547496.5:ENST00000548715.5:ENST00000549504.1:ENST00000539190.6:ENST00000552563.1:ENST00000547274.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.57035	4.574965000000001	4.57958	0.0945416	0.0288057	0.188571	0.123764
chr7	112170906	112171006	3692217	0	-	0.36	(0.33,0.36]	chr7	354969	1664	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.57035	4.574965000000001	4.57958	0.0945416	0.0288057	0.188571	0.123764
chr8	39073325	39073422	3804653	0	+	0.340206	(0.33,0.36]	chr8	366115	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	ADAM9	ENSG00000168615.13	ENST00000678474.1:ENST00000676765.1:ENST00000676936.1:ENST00000677908.1:ENST00000677004.1:ENST00000677165.1:ENST00000481058.2:ENST00000676643.1:ENST00000676669.1:ENST00000679268.1:ENST00000677582.1:ENST00000676617.1:ENST00000677137.1:ENST00000678540.1:ENST00000677359.1:ENST00000678730.1:ENST00000487273.7:ENST00000678253.1:ENST00000676489.1:ENST00000379917.7:ENST00000468065.5:ENST00000481873.7:ENST00000676919.1:ENST00000678863.1:ENST00000484143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.57035	4.574965000000001	4.57958	0.0945416	0.0288057	0.188571	0.123764
chr17	73310580	73310680	6969817	0	-	0.48	(0.45,0.485]	chr17	710631	3	SS5_PROX	SS5_PROX:INTRON	CDC42EP4	ENSG00000179604.10	ENST00000335793.4:ENST00000439510.2:ENST00000581014.1:ENST00000580315.1:ENST00000579611.1	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	4.0881	4.57474	5.06138	0.0492008	0.00202979	0.146142	0.0232814
chr16	89424861	89424961	6661082	0	-	0.47	(0.45,0.485]	chr16	666747	61	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	80	2	3.57078	4.57466	5.57854	0.0230065	0.00740503	0.102982	0.0553519
chr19	1413456	1413555	7187481	0	+	0.606061	(0.58,1]	chr19	731286	30	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	117	2	2.81461	4.57449	6.33437	0.00731787	0.00276493	0.0550721	0.0332418
chr11	70803622	70803721	5062319	0	-	0.545455	(0.523,0.58]	chr11	492707	47	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5:ENST00000460048.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	97	2	3.37594	4.5744050000000005	5.77287	0.0272868	0.00160162	0.112327	0.0197827
chr19	1171532	1171631	7305768	0	-	0.686869	(0.58,1]	chr19	753058	25	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.25332	4.574365	5.89541	0.0120565	0.0066708	0.0754623	0.0540577
chr14	95414537	95414637	6048922	0	-	0.53	(0.523,0.58]	chr14	593438	74	UTR3	UTR3:EXON_MRNA	SYNE3	ENSG00000176438.13	ENST00000682763.1:ENST00000557275.5	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	3.35934	4.57429	5.78924	0.0147166	0.0113252	0.0826843	0.071894
chr17	44041354	44041454	6910330	0	-	0.37	(0.36,0.39]	chr17	703395	7	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	1	83	2	3.65573	4.573985	5.49224	0.0304242	0.0067964	0.11845	0.0524192
chr6	170398171	170398270	3076561	0	+	0.434343	(0.419,0.45]	chr6	299192	22	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	3.74317	4.57397	5.40477	0.0385125	0.00581478	0.131324	0.047264
chr11	46099822	46099922	5030619	0	-	0.34	(0.33,0.36]	chr11	486583	72	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000689695.1:ENST00000685188.1:ENST00000532883.5:ENST00000524497.5:ENST00000693122.1:ENST00000529734.5:ENST00000529782.5:ENST00000688222.1:ENST00000690039.1:ENST00000533757.5:ENST00000525438.5:ENST00000692265.1:ENST00000527782.5:ENST00000532010.5:ENST00000528893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.31234	4.57386	4.83538	0.0679743	0.0458858	0.164413	0.154743
chr13	98537296	98537396	5747894	0	-	0.58	(0.523,0.58]	chr13	563357	154	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.13061	4.57369	5.01677	0.0533354	0.0482765	0.167062	0.144601
chr15	45172518	45172618	6250302	0	-	0.57	(0.523,0.58]	chr15	615589	2	SS3_PROX	SS3_PROX:INTRON	SHF	ENSG00000138606.20	ENST00000290894.12:ENST00000690270.1:ENST00000560540.5:ENST00000560734.5:ENST00000458022.6:ENST00000558294.1:ENST00000561239.6:ENST00000560471.5:ENST00000559566.5:ENST00000558685.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.13061	4.57369	5.01677	0.0533354	0.0482765	0.167062	0.144601
chr18	79227418	79227518	7098534	0	+	0.53	(0.523,0.58]	chr18	722872	130	INTRON	INTRON	ATP9B	ENSG00000166377.21	ENST00000586366.5:ENST00000426216.6:ENST00000307671.12:ENST00000590271.5:ENST00000490210.6:ENST00000585674.1:ENST00000587878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	38	2	4.13061	4.57369	5.01677	0.0533354	0.0482765	0.167062	0.144601
chr19	44946575	44946664	7269157	0	+	0.539326	(0.523,0.58]	chr19	746444	1	INTRON	INTRON	APOC4-APOC2:APOC2	ENSG00000224916.9:ENSG00000234906.11	ENST00000585685.5:ENST00000589057.5:ENST00000592257.5:ENST00000252490.7:ENST00000591597.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.13061	4.57369	5.01677	0.0533354	0.0482765	0.167062	0.144601
chr22	48755029	48755129	7751820	0	+	0.58	(0.523,0.58]	chr22	812294	32	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000336769.9	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.13061	4.57369	5.01677	0.0533354	0.0482765	0.167062	0.144601
chr4	3036973	3037073	2002189	0	+	0.53	(0.523,0.58]	chr4	204225	2	SS3_PROX	SS3_PROX:INTRON	GRK4	ENSG00000125388.20	ENST00000398052.9:ENST00000398051.8:ENST00000345167.10:ENST00000504933.1:ENST00000505271.5:ENST00000511827.5:ENST00000509545.5:ENST00000504308.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.13061	4.57369	5.01677	0.0533354	0.0482765	0.167062	0.144601
chr16	50155358	50155458	6448415	0	+	0.38	(0.36,0.39]	chr16	639560	7	INTRON	INTRON	TENT4B	ENSG00000121274.14	ENST00000436909.8:ENST00000561678.7:ENST00000562717.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	134	2	2.77099	4.573675	6.37636	0.0119495	0.00749622	0.0751888	0.0576451
chr8	17074496	17074596	3761221	0	+	0.31	(0.29,0.33]	chr8	361224	44	INTRON	INTRON	MICU3	ENSG00000155970.12	ENST00000318063.10:ENST00000522235.5:ENST00000519044.5:ENST00000517398.1:ENST00000517447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	80	2	3.28897	4.5735600000000005	5.85815	0.0137233	0.011855	0.0814223	0.0740271
chr2	175599472	175599572	959341	0	+	0.38	(0.36,0.39]	chr2	105443	45	INTRON	INTRON	ENSG00000289349	ENSG00000289349.1	ENST00000692740.1:ENST00000685522.1	lncRNA	lncRNA	lncRNA	lncRNA	3	135	2	2.63293	4.57355	6.51417	0.0163787	0.00592387	0.0910838	0.0506158
chr16	85588531	85588630	6518958	0	+	0.50505	(0.485,0.523]	chr16	646396	318	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	3.38908	4.57346	5.75784	0.0154142	0.0107186	0.0849828	0.0700744
chr1	228144896	228144988	358034	0	+	0.434783	(0.419,0.45]	chr1	40405	1	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:SS5_PROX:INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5:ENST00000366718.5:ENST00000470040.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	85	2	3.23773	4.57341	5.90909	0.0184411	0.0178095	0.0943752	0.0927235
chrX	133788643	133788742	8114053	0	-	0.575758	(0.523,0.58]	chrX	845523	341	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	105	2	3.1794	4.5730699999999995	5.96674	0.0109075	0.00624033	0.0707085	0.0497314
chr17	72754008	72754108	6965821	0	-	0.31	(0.29,0.33]	chr17	710488	169	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000581581.1:ENST00000579319.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.12201	4.57298	5.02395	0.0564091	0.0445554	0.171933	0.140478
chr12	26746262	26746362	5400732	0	-	0.45	(0.419,0.45]	chr12	528735	201	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000545235.1:ENST00000242737.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	84	2	3.35398	4.57243	5.79088	0.022052	0.0139289	0.101502	0.0824192
chr20	4857204	4857304	7517113	0	-	0.42	(0.419,0.45]	chr20	784812	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SLC23A2	ENSG00000089057.15	ENST00000379333.5:ENST00000338244.6	protein_coding	protein_coding	protein_coding	protein_coding	1	84	2	3.35398	4.57243	5.79088	0.022052	0.0139289	0.101502	0.0824192
chr1	39872762	39872862	451492	0	-	0.54	(0.523,0.58]	chr1	54272	67	INTRON	INTRON	TRIT1	ENSG00000043514.17	ENST00000316891.10:ENST00000648678.1:ENST00000537440.5:ENST00000372818.5:ENST00000462797.5:ENST00000441669.6:ENST00000495175.6:ENST00000491865.5:ENST00000541099.5:ENST00000492612.6:ENST00000489945.5:ENST00000486825.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.23973	4.572365	4.905	0.0563605	0.0444247	0.154188	0.153511
chr1	43423716	43423816	106292	0	+	0.53	(0.523,0.58]	chr1	12950	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SZT2	ENSG00000198198.17	ENST00000562955.2:ENST00000634258.3:ENST00000470139.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.23973	4.572365	4.905	0.0563605	0.0444247	0.154188	0.153511
chr10	116707099	116707199	4765944	0	-	0.54	(0.523,0.58]	chr10	455781	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HSPA12A	ENSG00000165868.16	ENST00000635765.1:ENST00000369209.8:ENST00000674197.1:ENST00000674401.1:ENST00000674505.1:ENST00000674167.1:ENST00000674205.1:ENST00000674394.1:ENST00000674347.1:ENST00000674459.1:ENST00000674344.1:ENST00000674491.1:ENST00000674372.1:ENST00000674375.1:ENST00000674223.1:ENST00000674473.1:ENST00000481291.2:ENST00000468935.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.23973	4.572365	4.905	0.0563605	0.0444247	0.154188	0.153511
chr17	17567888	17567988	6865352	0	-	0.57	(0.523,0.58]	chr17	695822	22	INTRON	INTRON	PEMT	ENSG00000133027.18	ENST00000255389.10:ENST00000435340.6:ENST00000395783.5:ENST00000395782.5:ENST00000395781.6:ENST00000580147.5:ENST00000421096.5:ENST00000472446.1:ENST00000461404.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.23973	4.572365	4.905	0.0563605	0.0444247	0.154188	0.153511
chr2	239299434	239299534	1391703	0	-	0.55	(0.523,0.58]	chr2	148744	9	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	37	2	4.23973	4.572365	4.905	0.0563605	0.0444247	0.154188	0.153511
chr21	45507993	45508093	7631391	0	+	0.56	(0.523,0.58]	chr21	797834	4	SS5_PROX	SS5_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9:ENST00000423214.1:ENST00000473212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.23973	4.572365	4.905	0.0563605	0.0444247	0.154188	0.153511
chr7	98242778	98242872	3647996	0	-	0.531915	(0.523,0.58]	chr7	351148	12	INTRON	INTRON	TECPR1	ENSG00000205356.10	ENST00000447648.7:ENST00000471397.1:ENST00000463648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	37	2	4.23973	4.572365	4.905	0.0563605	0.0444247	0.154188	0.153511
chr7	47377414	47377514	3587566	0	-	0.53	(0.523,0.58]	chr7	346036	74	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	95	2	3.10715	4.572355	6.03756	0.0418959	7.92905e-4	0.136901	0.0120621
chr7	74500400	74500500	3391831	0	+	0.35	(0.33,0.36]	chr7	327343	459	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	1	82	2	3.30428	4.572325	5.84037	0.0156381	0.014334	0.0850479	0.0833845
chr16	89434921	89435020	6661183	0	-	0.59596	(0.58,1]	chr16	666753	32	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	73	2	3.79235	4.572245000000001	5.35214	0.0181452	0.00302484	0.0921579	0.0305643
chr1	234962042	234962137	688787	0	-	0.515789	(0.485,0.523]	chr1	81090	8	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000238005	ENSG00000238005.5	ENST00000418557.1:ENST00000423175.2:ENST00000653723.1:ENST00000653884.1:ENST00000656076.2:ENST00000666699.1:ENST00000652109.1:ENST00000668743.1:ENST00000662592.1:ENST00000662989.1:ENST00000423988.1:ENST00000653154.1:ENST00000693204.1:ENST00000451766.2:ENST00000654767.1:ENST00000659687.1:ENST00000458044.1	lncRNA	lncRNA	lncRNA	lncRNA	0	38	2	4.12717	4.5721799999999995	5.01719	0.0545434	0.0480495	0.167824	0.144601
chr16	85454808	85454908	6517619	0	+	0.5	(0.485,0.523]	chr16	646391	955	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.12717	4.5721799999999995	5.01719	0.0545434	0.0480495	0.167824	0.144601
chr2	98459980	98460080	855511	0	+	0.52	(0.485,0.523]	chr2	96866	145	INTRON	INTRON	INPP4A	ENSG00000040933.16	ENST00000409016.8:ENST00000409851.8:ENST00000074304.9:ENST00000409463.5:ENST00000409540.7	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.12717	4.5721799999999995	5.01719	0.0545434	0.0480495	0.167824	0.144601
chr21	34965052	34965152	7656602	0	-	0.51	(0.485,0.523]	chr21	801067	717	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000482318.5:ENST00000455571.5:ENST00000475045.6:ENST00000416754.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.12717	4.5721799999999995	5.01719	0.0545434	0.0480495	0.167824	0.144601
chr7	26826039	26826139	3558011	0	-	0.5	(0.485,0.523]	chr7	343650	790	INTRON	INTRON	SKAP2	ENSG00000005020.13	ENST00000345317.7:ENST00000468712.5:ENST00000495802.5:ENST00000432747.1:ENST00000490456.6:ENST00000497511.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.12717	4.5721799999999995	5.01719	0.0545434	0.0480495	0.167824	0.144601
chr21	43727248	43727347	7623866	0	+	0.464646	(0.45,0.485]	chr21	796696	35	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000438837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	108	2	3.27155	4.5719899999999996	5.87243	0.0143887	0.00535743	0.0821732	0.0448556
chr7	22123318	22123417	3547822	0	-	0.494949	(0.485,0.523]	chr7	342838	4	INTRON	INTRON	RAPGEF5	ENSG00000136237.19	ENST00000665637.1:ENST00000401957.6:ENST00000344041.10:ENST00000620335.4	protein_coding	protein_coding	protein_coding	protein_coding	2	237	2	4.17794	4.571935	4.96593	0.0014639	0.00144376	0.0232985	0.0185482
chr5	32157264	32157364	2630487	0	-	0.51	(0.485,0.523]	chr5	261026	130	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	279	2	4.48646	4.571855	4.65725	0.00370776	9.50349e-5	0.039096	0.00262728
chrX	65516719	65516815	8055041	0	-	0.5	(0.485,0.523]	chrX	840752	14	INTRON	INTRON	LAS1L	ENSG00000001497.18	ENST00000677056.1:ENST00000677969.1:ENST00000374811.8:ENST00000374807.9:ENST00000677834.1:ENST00000484069.1:ENST00000374804.9:ENST00000677986.1:ENST00000677087.1:ENST00000679056.1:ENST00000679261.1:ENST00000678074.1:ENST00000678705.1:ENST00000679277.1:ENST00000677154.1:ENST00000678547.1:ENST00000678956.1:ENST00000679116.1:ENST00000678848.1:ENST00000678173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	80	2	3.26255	4.5718499999999995	5.88115	0.0142848	0.012541	0.0833845	0.0761905
chr5	73698773	73698873	2452418	0	+	0.59	(0.58,1]	chr5	244920	135	INTRON	INTRON	ARHGEF28	ENSG00000214944.10	ENST00000545377.5:ENST00000296794.10:ENST00000513042.7:ENST00000509848.5:ENST00000426542.6:ENST00000437974.5	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	3.35086	4.571845	5.79283	0.0218816	8.4246e-4	0.101015	0.0125912
chr19	33203677	33203773	7240909	0	+	0.614583	(0.58,1]	chr19	741410	3	INTRON	INTRON	LRP3	ENSG00000130881.14	ENST00000592484.5:ENST00000253193.9:ENST00000590275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	73	2	3.44157	4.57174	5.70191	0.00964351	0.00760198	0.0659937	0.0561937
chr1	109555937	109556037	202105	0	+	0.5	(0.485,0.523]	chr1	22135	67	INTRON	INTRON	GNAI3	ENSG00000065135.12	ENST00000369851.7	protein_coding	protein_coding	protein_coding	protein_coding	1	95	2	3.10938	4.57167	6.03396	0.0416572	8.35707e-4	0.136301	0.012554
chr15	34248523	34248621	6216165	0	-	0.306122	(0.29,0.33]	chr15	612031	23	INTRON	INTRON	SLC12A6	ENSG00000140199.13	ENST00000354181.8:ENST00000290209.9:ENST00000676379.1:ENST00000397702.6:ENST00000559664.5:ENST00000458406.6:ENST00000559523.5:ENST00000397707.6:ENST00000560611.5:ENST00000560164.5:ENST00000561080.5:ENST00000558667.5:ENST00000558589.5:ENST00000675289.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.2311	4.571635	4.91217	0.0522244	0.0471437	0.156915	0.148503
chr2	119941307	119941407	885426	0	+	0.3	(0.29,0.33]	chr2	100196	60	INTRON	INTRON	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000430976.5:ENST00000431283.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.2311	4.571635	4.91217	0.0522244	0.0471437	0.156915	0.148503
chr1	42200125	42200223	455180	0	-	0.428571	(0.419,0.45]	chr1	54725	5	INTRON	INTRON	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6:ENST00000445886.5:ENST00000422278.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.38804	4.57147	4.7549	0.0888907	0.0451818	0.183874	0.154539
chr21	31968785	31968885	7608038	0	+	0.45	(0.419,0.45]	chr21	794563	4	SS5_PROX	SS5_PROX:INTRON	HUNK	ENSG00000142149.9	ENST00000270112.7	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.38804	4.57147	4.7549	0.0888907	0.0451818	0.183874	0.154539
chr3	48676408	48676504	1768366	0	-	0.427083	(0.419,0.45]	chr3	182776	13	INTRON	INTRON	NCKIPSD	ENSG00000213672.8	ENST00000294129.7:ENST00000416649.6:ENST00000413374.1:ENST00000470006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.38804	4.57147	4.7549	0.0888907	0.0451818	0.183874	0.154539
chr7	7708872	7708972	3316618	0	+	0.43	(0.419,0.45]	chr7	321711	165	INTRON	INTRON	UMAD1	ENSG00000219545.12	ENST00000493246.5:ENST00000682710.1:ENST00000463725.5:ENST00000638342.1:ENST00000636849.1:ENST00000639343.1:ENST00000639110.1:ENST00000482067.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.38804	4.57147	4.7549	0.0888907	0.0451818	0.183874	0.154539
chr7	129255530	129255630	3475754	0	+	0.44	(0.419,0.45]	chr7	335957	297	INTRON	INTRON	AHCYL2	ENSG00000158467.17	ENST00000325006.8:ENST00000446544.6	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.38804	4.57147	4.7549	0.0888907	0.0451818	0.183874	0.154539
chr2	3220141	3220241	1080302	0	-	0.45	(0.419,0.45]	chr2	117609	55	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000482570.5:ENST00000443925.6:ENST00000406835.6:ENST00000462515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	88	2	3.95434	4.57119	5.18804	0.051668	0.0035117	0.148503	0.0339498
chr2	3459139	3459228	711024	0	+	0.662921	(0.58,1]	chr2	83176	3	INTRON	INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000479955.5:ENST00000497597.5:ENST00000473348.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	101	2	2.7859	4.57118	6.35646	0.0136245	0.00264106	0.0811816	0.0325876
chr16	47421288	47421388	6585407	0	-	0.49	(0.485,0.523]	chr16	658341	252	INTRON	INTRON	ITFG1	ENSG00000129636.13	ENST00000320640.11:ENST00000544001.6:ENST00000569551.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.23628	4.57085	4.90542	0.0561086	0.045492200000000003	0.154539	0.154188
chr2	69814879	69814973	825801	0	+	0.510638	(0.485,0.523]	chr2	93043	2	EXON_MRNA	EXON_MRNA:INTRON	ANXA4	ENSG00000196975.16	ENST00000477632.5:ENST00000409920.5:ENST00000635311.1:ENST00000394295.6:ENST00000471395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.23628	4.57085	4.90542	0.0561086	0.045492200000000003	0.154539	0.154188
chr9	6942459	6942546	4116806	0	+	0.494253	(0.485,0.523]	chr9	391904	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000438023.5:ENST00000381306.7:ENST00000381309.8:ENST00000543771.5:ENST00000496464.1:ENST00000428870.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.23628	4.57085	4.90542	0.0561086	0.045492200000000003	0.154539	0.154188
chr11	96245595	96245695	5112592	0	-	0.39	(0.36,0.39]	chr11	496566	1517	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	0	39	2	4.09186	4.570675	5.04949	0.0687088	0.0563927	0.193274	0.154188
chr1	149552666	149552760	239203	0	+	0.404255	(0.39,0.419]	chr1	26970	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF19	ENSG00000271383.8	ENST00000651566.2:ENST00000611931.4:ENST00000612881.4:ENST00000369227.7	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.20027	4.570435	4.9406	0.0658437	0.0583327	0.175217	0.162385
chr10	100998981	100999081	4570111	0	+	0.55	(0.523,0.58]	chr10	436339	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LZTS2	ENSG00000107816.17	ENST00000426584.5:ENST00000370223.7:ENST00000489526.1:ENST00000429732.5:ENST00000481129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	105	2	3.04117	4.57039	6.09961	0.00879505	0.00866655	0.0623824	0.0615125
chr7	23415274	23415371	3552654	0	-	0.618557	(0.58,1]	chr7	343216	22	EXON_MRNA	EXON_MRNA:INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	88	2	2.87471	4.570075	6.26544	0.0495478	2.06156e-4	0.146562	0.00461335
chr19	34392386	34392481	7243274	0	+	0.505263	(0.485,0.523]	chr19	741719	3	EXON_MRNA	EXON_MRNA:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000589985.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	142	2	3.26517	4.56974	5.87431	0.0159747	0.00127835	0.0863567	0.0168904
chr5	93800378	93800478	2726183	0	-	0.41	(0.39,0.419]	chr5	267858	155	INTRON	INTRON	FAM172A	ENSG00000113391.19	ENST00000395965.8:ENST00000505869.5:ENST00000509739.5:ENST00000509163.5:ENST00000502503.1:ENST00000511139.1:ENST00000510445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	39	2	4.09132	4.569735	5.04815	0.0689553	0.0572698	0.193274	0.154343
chr1	221741880	221741980	668151	0	-	0.55	(0.523,0.58]	chr1	78373	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DUSP10	ENSG00000143507.18	ENST00000366899.4:ENST00000477026.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	108	2	3.83429	4.56972	5.30515	0.012469	0.00509102	0.0761905	0.0433513
chr20	21238784	21238884	7448903	0	+	0.6	(0.58,1]	chr20	775009	56	INTRON	INTRON	KIZ	ENSG00000088970.16	ENST00000619574.4:ENST00000620891.4:ENST00000611685.4:ENST00000616848.4:ENST00000619189.5:ENST00000616679.4:ENST00000619179.4:ENST00000621366.1:ENST00000451772.5:ENST00000419359.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	83	2	2.84993	4.569535	6.28914	0.0297842	0.00303562	0.126591	0.0350226
chr13	113051509	113051608	5656150	0	+	0.565657	(0.523,0.58]	chr13	555180	43	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	80	2	3.229	4.569485	5.90997	0.0152072	0.012016	0.0861813	0.0743424
chr19	1171830	1171930	7305771	0	-	0.62	(0.58,1]	chr19	753058	28	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	3.46232	4.56937	5.67642	0.0178328	0.00117039	0.0915706	0.0157899
chr6	1680525	1680625	3079675	0	-	0.63	(0.58,1]	chr6	299464	2	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000533279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	74	2	3.9245	4.569135	5.21377	0.0230012	0.00209574	0.102982	0.0238576
chr3	17496979	17497079	1702335	0	-	0.39	(0.36,0.39]	chr3	177733	681	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	100	2	2.99709	4.5689150000000005	6.14074	0.054944	0.0010006	0.153337	0.0142243
chr14	104871155	104871255	5925923	0	+	0.63	(0.58,1]	chr14	579942	22	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	1	81	2	4.31005	4.56879	4.82753	0.0427798	6.7911e-4	0.13762	0.0108488
chr20	20464833	20464933	7533846	0	-	0.35	(0.33,0.36]	chr20	786266	523	INTRON	INTRON	RALGAPA2	ENSG00000188559.16	ENST00000202677.12:ENST00000430436.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.49588	4.568595	4.64131	0.0867669	0.033477	0.182221	0.133139
chr7	30074332	30074432	3338044	0	+	0.34	(0.33,0.36]	chr7	323067	2	SS5_PROX	SS5_PROX:INTRON	PLEKHA8	ENSG00000106086.20	ENST00000622102.4:ENST00000258679.11:ENST00000649443.1:ENST00000449726.6:ENST00000396257.6:ENST00000396259.5:ENST00000440706.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.49588	4.568595	4.64131	0.0867669	0.033477	0.182221	0.133139
chr7	34725276	34725374	3572881	0	-	0.357143	(0.33,0.36]	chr7	344532	15	INTRON	INTRON	NPSR1-AS1	ENSG00000197085.11	ENST00000419766.5:ENST00000539747.5:ENST00000439852.5:ENST00000358772.8:ENST00000431669.5:ENST00000428922.5:ENST00000436945.4	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	36	2	4.49588	4.568595	4.64131	0.0867669	0.033477	0.182221	0.133139
chr7	67029310	67029409	3384317	0	+	0.333333	(0.33,0.36]	chr7	326564	39	INTRON	INTRON	TYW1	ENSG00000198874.14	ENST00000359626.10:ENST00000361660.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.49588	4.568595	4.64131	0.0867669	0.033477	0.182221	0.133139
chr8	86414550	86414649	3853842	0	+	0.353535	(0.33,0.36]	chr8	369757	23	INTRON	INTRON	WWP1	ENSG00000123124.14	ENST00000517970.6:ENST00000265428.4:ENST00000518683.5:ENST00000520374.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.49588	4.568595	4.64131	0.0867669	0.033477	0.182221	0.133139
chr5	81134351	81134451	2470000	0	+	0.55	(0.523,0.58]	chr5	246654	68	INTRON	INTRON	RASGRF2	ENSG00000113319.13	ENST00000265080.9:ENST00000503795.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	78	2	3.62427	4.56837	5.51247	0.0230387	0.0060311	0.102982	0.0484641
chr3	48425280	48425333	1766686	0	-	0.641509	(0.58,1]	chr3	182280	1	UTR5	UTR5:EXON_MRNA:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	100	2	2.82468	4.5683050000000005	6.31193	0.0123866	0.00289626	0.0765738	0.03418
chr2	75547687	75547787	1194656	0	-	0.49	(0.485,0.523]	chr2	129875	211	INTRON	INTRON	EVA1A	ENSG00000115363.14	ENST00000485891.1:ENST00000490746.5:ENST00000233712.5:ENST00000393913.8:ENST00000410113.5:ENST00000410071.5:ENST00000432649.5:ENST00000486696.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	425	2	3.7614	4.568295	5.37519	6.27965e-4	3.45712e-4	0.0147128	0.00672667
chr11	70786850	70786950	5062150	0	-	0.42	(0.419,0.45]	chr11	492701	690	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	87	2	3.06656	4.56829	6.07002	0.0252325	0.0143746	0.114921	0.0821732
chr19	34383497	34383597	7243185	0	+	0.57	(0.523,0.58]	chr19	741718	15	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	87	2	2.86937	4.5682849999999995	6.2672	0.0324455	0.00644151	0.130548	0.0530091
chr19	945910	946010	7185305	0	+	0.59	(0.58,1]	chr19	730741	128	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	74	2	3.30273	4.56824	5.83375	0.0107069	0.00751249	0.0700635	0.0576451
chr2	239285873	239285973	1391567	0	-	0.53	(0.523,0.58]	chr2	148740	343	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	78	2	3.47888	4.568185	5.65749	0.0182707	0.00856566	0.0921579	0.0612
chr6	158604266	158604366	3064343	0	+	0.48	(0.45,0.485]	chr6	297717	141	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	1	81	2	3.26377	4.568099999999999	5.87243	0.0149252	0.0143887	0.0848525	0.0821732
chr14	104873355	104873455	5925945	0	+	0.61	(0.58,1]	chr14	579942	44	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	4.13012	4.567985	5.00585	0.0323732	0.00116063	0.121593	0.0157704
chr4	23873894	23873993	2209451	0	-	0.454545	(0.45,0.485]	chr4	223321	73	INTRON	INTRON	PPARGC1A	ENSG00000109819.9	ENST00000509702.5:ENST00000264867.7:ENST00000613098.4:ENST00000506055.5:ENST00000513205.5:ENST00000509642.5:ENST00000617484.4:ENST00000612355.1:ENST00000508380.1:ENST00000512169.1:ENST00000507342.5:ENST00000515534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	80	2	3.38668	4.567905	5.74913	0.017574	0.0113463	0.0906595	0.0719708
chr6	130867865	130867959	3260212	0	-	0.361702	(0.36,0.39]	chr6	315458	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000528282.5:ENST00000531410.5:ENST00000452150.6:ENST00000392427.7:ENST00000530757.5:ENST00000368128.6:ENST00000527411.5:ENST00000524581.5:ENST00000525271.5:ENST00000529208.5:ENST00000525193.5:ENST00000527659.5:ENST00000527017.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	225	2	4.31593	4.56781	4.81969	0.00650536	3.36769e-4	0.0532935	0.00660351
chr15	64519153	64519253	6131526	0	+	0.35	(0.33,0.36]	chr15	603266	162	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	83	2	3.838	4.567769999999999	5.29754	0.0360263	0.00414833	0.127853	0.0377122
chr4	82370827	82370927	2265326	0	-	0.35	(0.33,0.36]	chr4	228229	108	INTRON	INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000513584.1:ENST00000509263.5:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	81	2	3.42056	4.567475	5.71439	0.0191308	0.0110831	0.0952349	0.071519
chr16	81680720	81680820	6510118	0	+	0.67	(0.58,1]	chr16	645979	17	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	3.37954	4.5673	5.75506	0.0207688	9.38062e-4	0.098873	0.0135546
chr4	39781108	39781207	2036265	0	+	0.40404	(0.39,0.419]	chr4	207916	28	UTR3	UTR3:EXON_MRNA	UBE2K	ENSG00000078140.14	ENST00000261427.10	protein_coding	protein_coding	protein_coding	protein_coding	2	115	2	3.46459	4.567255	5.66992	0.0237738	0.00377182	0.105296	0.0353672
chr2	3458961	3459050	711022	0	+	0.337079	(0.33,0.36]	chr2	83176	1	INTRON	INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000479955.5:ENST00000497597.5:ENST00000473348.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	83	2	3.1778	4.567015	5.95623	0.0187975	0.0129408	0.0980631	0.0775979
chr1	1024056	1024155	955	0	+	0.646465	(0.58,1]	chr1	166	12	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.18518	4.567	4.94882	0.0374658	0.0354433	0.139793	0.127188
chr1	16130919	16130994	403890	0	-	0.666667	(0.58,1]	chr1	46435	1	INTRON	INTRON	EPHA2	ENSG00000142627.13	ENST00000358432.8	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.18518	4.567	4.94882	0.0374658	0.0354433	0.139793	0.127188
chr10	79203182	79203281	4533390	0	+	0.585859	(0.58,1]	chr10	432445	11	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.18518	4.567	4.94882	0.0374658	0.0354433	0.139793	0.127188
chr11	61775555	61775655	4862732	0	+	0.6	(0.58,1]	chr11	466038	1	SS3_PROX	SS3_PROX:INTRON	MYRF	ENSG00000124920.14	ENST00000278836.10:ENST00000265460.9:ENST00000675319.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.18518	4.567	4.94882	0.0374658	0.0354433	0.139793	0.127188
chr11	70687702	70687801	5061156	0	-	0.626263	(0.58,1]	chr11	492688	177	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.18518	4.567	4.94882	0.0374658	0.0354433	0.139793	0.127188
chr19	3527062	3527162	7191568	0	+	0.69	(0.58,1]	chr19	732243	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.18518	4.567	4.94882	0.0374658	0.0354433	0.139793	0.127188
chr3	44975632	44975732	1756967	0	-	0.63	(0.58,1]	chr3	181052	3	SS5_PROX	SS5_PROX:INTRON	ZDHHC3	ENSG00000163812.15	ENST00000339420.7:ENST00000424952.7:ENST00000296127.7:ENST00000342790.8:ENST00000455235.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.18518	4.567	4.94882	0.0374658	0.0354433	0.139793	0.127188
chr7	1024401	1024501	3526467	0	-	0.6	(0.58,1]	chr7	340572	139	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.18518	4.567	4.94882	0.0374658	0.0354433	0.139793	0.127188
chr8	143952246	143952344	4098643	0	-	0.673469	(0.58,1]	chr8	389857	15	INTRON	INTRON	PLEC	ENSG00000178209.17	ENST00000436759.6:ENST00000527303.2:ENST00000356346.7:ENST00000354958.6:ENST00000528025.6:ENST00000527096.5:ENST00000685198.1:ENST00000532346.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.18518	4.567	4.94882	0.0374658	0.0354433	0.139793	0.127188
chr10	100549432	100549532	4569160	0	+	0.51	(0.485,0.523]	chr10	436105	14	UTR3	UTR3:EXON_MRNA	HIF1AN	ENSG00000166135.14	ENST00000299163.7	protein_coding	protein_coding	protein_coding	protein_coding	4	145	2	2.79896	4.566425000000001	6.33389	0.0068531	0.00567224	0.0526888	0.0496143
chr11	70688200	70688300	5061161	0	-	0.6	(0.58,1]	chr11	492688	182	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	73	2	3.39676	4.56639	5.73602	0.00904546	0.0085026	0.0637469	0.0608246
chr3	65904481	65904579	1814522	0	-	0.632653	(0.58,1]	chr3	187306	13	INTRON	INTRON	MAGI1:MAGI1-IT1	ENSG00000151276.24:ENSG00000272610.1	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5:ENST00000460754.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA:processed_transcript	1	73	2	3.39676	4.56639	5.73602	0.00904546	0.0085026	0.0637469	0.0608246
chr1	52919207	52919307	485627	0	-	0.51	(0.485,0.523]	chr1	57740	12	INTRON	INTRON	ECHDC2	ENSG00000121310.17	ENST00000536120.5:ENST00000371522.9:ENST00000460612.5:ENST00000371520.5:ENST00000358358.9:ENST00000476477.6:ENST00000467988.2:ENST00000488268.5:ENST00000544365.5:ENST00000495920.5:ENST00000544531.5:ENST00000480312.6:ENST00000542552.1:ENST00000474789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	682	2	3.95995	4.566269999999999	5.17259	0.00169968	1.85327e-5	0.0255734	7.9951e-4
chr7	47497818	47497917	3588790	0	-	0.515152	(0.485,0.523]	chr7	346132	163	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	2	139	2	3.1918	4.566055	5.94031	0.0181853	0.00107389	0.0921579	0.0148869
chr16	22424812	22424912	6566812	0	-	0.61	(0.58,1]	chr16	655121	22	INTRON	INTRON	CDR2:RRN3P3	ENSG00000140743.8:ENSG00000257122.5	ENST00000564542.5:ENST00000563573.5:ENST00000569045.1:ENST00000551766.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	4	140	2	3.23609	4.5657499999999995	5.89541	0.0066708	0.00147887	0.0540577	0.0186171
chr13	113331475	113331574	5753245	0	-	0.646465	(0.58,1]	chr13	564094	50	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	3	117	2	2.73167	4.56566	6.39965	0.00910814	0.00241374	0.0631967	0.0309229
chr8	120791977	120792077	4059823	0	-	0.39	(0.36,0.39]	chr8	386607	977	INTRON	INTRON	SNTB1	ENSG00000172164.15	ENST00000395601.7:ENST00000517992.2:ENST00000648490.1:ENST00000519177.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	100	2	2.93677	4.5656	6.19443	0.0598652	8.7159e-4	0.158491	0.0128912
chr16	28386762	28386861	6574008	0	-	0.454545	(0.45,0.485]	chr16	656336	29	INTRON	INTRON	EIF3CL	ENSG00000205609.13	ENST00000398944.7:ENST00000380876.5	protein_coding	protein_coding	protein_coding	protein_coding	2	213	2	4.16548	4.565474999999999	4.96547	0.00745037	1.73515e-4	0.0576451	0.0040962
chr1	17680878	17680978	55020	0	+	0.46	(0.45,0.485]	chr1	5603	159	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.41963	4.565365	4.7111	0.0781398	0.0355247	0.175203	0.137983
chr11	7625376	7625476	4793066	0	+	0.48	(0.45,0.485]	chr11	459382	2	SS3_PROX	SS3_PROX:INTRON	PPFIBP2	ENSG00000166387.14	ENST00000684123.1:ENST00000299492.9:ENST00000529575.5:ENST00000533792.5:ENST00000532926.5:ENST00000684215.1:ENST00000650027.1:ENST00000525597.5:ENST00000529021.1:ENST00000528883.5:ENST00000530181.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.41963	4.565365	4.7111	0.0781398	0.0355247	0.175203	0.137983
chr13	98539796	98539896	5747919	0	-	0.47	(0.45,0.485]	chr13	563357	179	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.41963	4.565365	4.7111	0.0781398	0.0355247	0.175203	0.137983
chr20	33643946	33644046	7459104	0	+	0.47	(0.45,0.485]	chr20	776537	2	SS3_PROX	SS3_PROX:INTRON	CBFA2T2	ENSG00000078699.22	ENST00000342704.11:ENST00000375279.6:ENST00000346541.7:ENST00000397800.5:ENST00000492345.5:ENST00000359606.3:ENST00000543126.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.41963	4.565365	4.7111	0.0781398	0.0355247	0.175203	0.137983
chr6	52553424	52553524	3148212	0	-	0.48	(0.45,0.485]	chr6	307028	172	INTRON	INTRON	TRAM2	ENSG00000065308.5	ENST00000182527.4	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.41963	4.565365	4.7111	0.0781398	0.0355247	0.175203	0.137983
chr3	13025194	13025294	1689388	0	-	0.64	(0.58,1]	chr3	176542	27	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	2	98	2	3.46351	4.565245	5.66698	0.0102927	0.0022345	0.0684871	0.024843
chrX	2393872	2393972	7967783	0	-	0.61	(0.58,1]	chrX	834361	10	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	97	2	3.03776	4.56516	6.09256	0.00720487	0.00452436	0.0543254	0.0436138
chr17	77350399	77350499	6803863	0	+	0.56	(0.523,0.58]	chr17	686742	262	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	206	2	4.12435	4.565144999999999	5.00594	0.00737536	1.28987e-4	0.0572036	0.00330377
chr17	14326063	14326163	6683040	0	+	0.35	(0.33,0.36]	chr17	670741	207	INTRON	INTRON	HS3ST3B1	ENSG00000125430.9	ENST00000360954.3:ENST00000466596.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	167	2	2.56905	4.5650949999999995	6.56114	0.0110018	0.00455773	0.0710605	0.0438198
chr10	79105029	79105129	4532405	0	+	0.38	(0.36,0.39]	chr10	432420	354	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.56076	4.56501	4.56926	0.103289	0.031369	0.197541	0.127822
chr12	132743053	132743153	5539931	0	-	0.38	(0.36,0.39]	chr12	546704	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ANKLE2	ENSG00000176915.15	ENST00000357997.10:ENST00000539605.5:ENST00000538591.5:ENST00000535036.5:ENST00000545623.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.56076	4.56501	4.56926	0.103289	0.031369	0.197541	0.127822
chr13	72955299	72955399	5611512	0	+	0.37	(0.36,0.39]	chr13	552570	237	INTRON	INTRON	PIBF1	ENSG00000083535.16	ENST00000326291.11:ENST00000617689.4:ENST00000615625.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.56076	4.56501	4.56926	0.103289	0.031369	0.197541	0.127822
chr19	47182395	47182495	7276346	0	+	0.37	(0.36,0.39]	chr19	747388	17	INTRON	INTRON	SAE1	ENSG00000142230.13	ENST00000413379.7:ENST00000270225.12:ENST00000598840.5:ENST00000414294.6:ENST00000660039.1:ENST00000664120.1:ENST00000596995.1:ENST00000392776.3:ENST00000659110.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.56076	4.56501	4.56926	0.103289	0.031369	0.197541	0.127822
chr21	37384205	37384304	7619143	0	+	0.383838	(0.36,0.39]	chr21	796015	87	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.56076	4.56501	4.56926	0.103289	0.031369	0.197541	0.127822
chr4	118775627	118775727	2314997	0	-	0.39	(0.36,0.39]	chr4	232604	59	INTRON	INTRON	SEC24D	ENSG00000150961.15	ENST00000280551.11:ENST00000514561.5:ENST00000419654.6:ENST00000509818.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.56076	4.56501	4.56926	0.103289	0.031369	0.197541	0.127822
chr7	209176	209276	3305746	0	+	0.39	(0.36,0.39]	chr7	320160	2	SS5_PROX	SS5_PROX:INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.56076	4.56501	4.56926	0.103289	0.031369	0.197541	0.127822
chr8	96908181	96908281	3872567	0	+	0.37	(0.36,0.39]	chr8	371378	278	INTRON	INTRON	CPQ	ENSG00000104324.16	ENST00000220763.10	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.56076	4.56501	4.56926	0.103289	0.031369	0.197541	0.127822
chr9	128755007	128755107	4415543	0	-	0.38	(0.36,0.39]	chr9	421319	2	SS5_PROX	SS5_PROX:INTRON	ZER1	ENSG00000160445.11	ENST00000291900.7:ENST00000494461.1:ENST00000414921.5:ENST00000427848.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.56076	4.56501	4.56926	0.103289	0.031369	0.197541	0.127822
chr22	32670758	32670858	7791366	0	-	0.41	(0.39,0.419]	chr22	817442	405	INTRON	INTRON	SYN3	ENSG00000185666.15	ENST00000358763.7:ENST00000462268.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	92	2	4.18907	4.564835	4.9406	0.0658437	0.00184231	0.162385	0.0217471
chr10	132754072	132754172	4619013	0	+	0.66	(0.58,1]	chr10	441201	2	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.54927	4.56476	4.58025	0.0643046	0.0172566	0.161669	0.0923809
chr12	125121934	125122033	5349521	0	+	0.616162	(0.58,1]	chr12	523174	22	EXON_MRNA	EXON_MRNA:INTRON	AACS	ENSG00000081760.17	ENST00000316519.11:ENST00000441247.6:ENST00000316543.14:ENST00000539251.5:ENST00000538851.5:ENST00000545511.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.54927	4.56476	4.58025	0.0643046	0.0172566	0.161669	0.0923809
chr17	80663788	80663888	6810093	0	+	0.61	(0.58,1]	chr17	687822	196	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.54927	4.56476	4.58025	0.0643046	0.0172566	0.161669	0.0923809
chr19	6228095	6228194	7321292	0	-	0.59596	(0.58,1]	chr19	756087	6	INTRON	INTRON	MLLT1	ENSG00000130382.9	ENST00000252674.9	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.54927	4.56476	4.58025	0.0643046	0.0172566	0.161669	0.0923809
chr20	64053428	64053528	7510847	0	+	0.61	(0.58,1]	chr20	783795	30	INTRON	INTRON	TCEA2	ENSG00000171703.17	ENST00000475792.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	34	2	4.54927	4.56476	4.58025	0.0643046	0.0172566	0.161669	0.0923809
chr20	58689243	58689343	7498570	0	+	0.46	(0.45,0.485]	chr20	781977	99	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1:ENST00000413559.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	2	107	2	3.19847	4.564405	5.93034	0.0130794	0.00642738	0.0782396	0.0503748
chr18	45911042	45911142	7153562	0	-	0.3	(0.29,0.33]	chr18	727280	3	SS3_PROX	SS3_PROX:INTRON	EPG5	ENSG00000152223.16	ENST00000696483.1:ENST00000696484.1:ENST00000282041.11:ENST00000587884.2:ENST00000590884.6:ENST00000592272.6:ENST00000696485.1:ENST00000696489.1:ENST00000586655.2:ENST00000696490.1:ENST00000696482.1:ENST00000585906.5:ENST00000587974.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	81	2	3.15459	4.564315	5.97404	0.0184236	0.0096909	0.0964756	0.0661757
chr12	49375281	49375381	5225246	0	+	0.35	(0.33,0.36]	chr12	507159	36	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549538.5:ENST00000549412.5:ENST00000550643.5:ENST00000548654.5:ENST00000548710.5:ENST00000549179.5:ENST00000548377.5:ENST00000549298.5:ENST00000552918.6:ENST00000549375.5:ENST00000553127.5:ENST00000321898.10:ENST00000551540.5:ENST00000548777.5:ENST00000552171.1:ENST00000547865.5:ENST00000548388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	87	2	4.06936	4.56428	5.0592	0.0504445	0.00231927	0.148216	0.0255753
chr17	2616254	2616354	6666665	0	+	0.4	(0.39,0.419]	chr17	667911	20	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000576586.5:ENST00000397195.10:ENST00000676201.1:ENST00000575477.5:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000570400.1:ENST00000571289.1:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.55943	4.56407	4.56871	0.104562	0.0315133	0.19835	0.127889
chr2	36597279	36597376	1118774	0	-	0.391753	(0.39,0.419]	chr2	122313	29	INTRON	INTRON	FEZ2	ENSG00000171055.15	ENST00000379245.8:ENST00000405912.8:ENST00000451623.5:ENST00000357996.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.55943	4.56407	4.56871	0.104562	0.0315133	0.19835	0.127889
chr4	165410891	165410991	2162744	0	+	0.41	(0.39,0.419]	chr4	219073	242	INTRON	INTRON	CPE	ENSG00000109472.14	ENST00000513982.5:ENST00000402744.9	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.55943	4.56407	4.56871	0.104562	0.0315133	0.19835	0.127889
chr3	53667733	53667833	1478135	0	+	0.37	(0.36,0.39]	chr3	158771	8	INTRON	INTRON	CACNA1D	ENSG00000157388.20	ENST00000637424.1:ENST00000288139.11:ENST00000350061.11:ENST00000636938.1:ENST00000422281.7:ENST00000636570.1:ENST00000640483.1:ENST00000636627.1:ENST00000481085.5:ENST00000464429.1:ENST00000481478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.30212	4.5639199999999995	4.82572	0.0751666	0.0494303	0.172839	0.160725
chr7	2763526	2763626	3534278	0	-	0.38	(0.36,0.39]	chr7	341310	3	INTRON	INTRON	GNA12	ENSG00000146535.14	ENST00000275364.8:ENST00000407904.7:ENST00000471281.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.30212	4.5639199999999995	4.82572	0.0751666	0.0494303	0.172839	0.160725
chrX	44963488	44963588	7872577	0	+	0.39	(0.36,0.39]	chrX	825088	17	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.30212	4.5639199999999995	4.82572	0.0751666	0.0494303	0.172839	0.160725
chr1	65231249	65231349	159289	0	+	0.37	(0.36,0.39]	chr1	18081	52	UTR3	UTR3:EXON_MRNA	AK4	ENSG00000162433.15	ENST00000545314.5:ENST00000395334.6:ENST00000327299.8	protein_coding	protein_coding	protein_coding	protein_coding	4	407	2	4.11487	4.56382	5.01277	0.00290278	1.95289e-4	0.0342042	0.0044508
chr9	134340732	134340831	4260830	0	+	0.646465	(0.58,1]	chr9	406311	137	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	75	2	3.20215	4.563715	5.92528	0.0136092	0.0062948	0.0811697	0.0523832
chr9	134412791	134412890	4261561	0	+	0.616162	(0.58,1]	chr9	406352	33	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000481739.2:ENST00000356384.4:ENST00000672570.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	75	2	3.20215	4.563715	5.92528	0.0136092	0.0062948	0.0811697	0.0523832
chr2	54533211	54533311	799045	0	+	0.37	(0.36,0.39]	chr2	90794	46	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	3.88364	4.563405	5.24317	0.0433841	0.00394555	0.138813	0.0367806
chr3	171700026	171700126	1957438	0	-	0.49	(0.485,0.523]	chr3	199005	2	SS3_PROX	SS3_PROX:INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9:ENST00000481505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	464	2	4.181	4.563255	4.94551	0.00187009	3.83817e-5	0.0270246	0.00135052
chr6	3309594	3309693	3086581	0	-	0.606061	(0.58,1]	chr6	299762	110	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000467144.5:ENST00000496753.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	72	2	3.60807	4.5631	5.51813	0.013519	0.00495688	0.0792526	0.0425347
chr15	60858639	60858739	6288119	0	-	0.4	(0.39,0.419]	chr15	619558	1524	INTRON	INTRON	RORA	ENSG00000069667.16	ENST00000335670.11:ENST00000551975.5:ENST00000557822.5:ENST00000559145.1:ENST00000561093.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.30157	4.56298	4.82439	0.0762206	0.0496288	0.174484	0.160725
chr6	31409349	31409448	2893050	0	+	0.40404	(0.39,0.419]	chr6	282454	53	INTRON	INTRON	MICA	ENSG00000204520.14	ENST00000616296.4:ENST00000674069.1:ENST00000673996.1:ENST00000673647.1:ENST00000449934.7:ENST00000421350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.30157	4.56298	4.82439	0.0762206	0.0496288	0.174484	0.160725
chr7	47473609	47473709	3588544	0	-	0.5	(0.485,0.523]	chr7	346123	205	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	3.61303	4.562965	5.5129	0.0229047	0.00630038	0.102982	0.0501647
chr7	128593117	128593217	3473806	0	+	0.45	(0.419,0.45]	chr7	335610	7	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	1	102	2	3.13761	4.56283	5.98805	0.0472779	0.00164584	0.143504	0.0202325
chr20	456257	456357	7512270	0	-	0.4	(0.39,0.419]	chr20	784037	50	INTRON	INTRON	TBC1D20	ENSG00000125875.15	ENST00000680792.1:ENST00000354200.5:ENST00000461304.5:ENST00000681539.1:ENST00000679741.1:ENST00000680990.1:ENST00000681129.1:ENST00000681414.1:ENST00000681441.1:ENST00000680284.1:ENST00000681777.1:ENST00000681389.1:ENST00000679895.1:ENST00000680491.1:ENST00000679451.1:ENST00000679953.1:ENST00000461188.6:ENST00000680521.1:ENST00000681551.1:ENST00000679973.1:ENST00000680911.1:ENST00000679944.1:ENST00000681636.1:ENST00000680106.1:ENST00000494633.1:ENST00000680050.1:ENST00000681742.1:ENST00000680515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	139	2	2.33564	4.56271	6.78978	0.0799089	1.77584e-4	0.177053	0.00415615
chr19	16837599	16837698	7217742	0	+	0.575758	(0.523,0.58]	chr19	737614	56	INTRON	INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000596802.5	protein_coding	protein_coding	protein_coding	protein_coding	1	104	2	3.72301	4.56263	5.40225	0.015164	0.00404292	0.0844216	0.0371291
chr1	43980046	43980140	110956	0	+	0.553191	(0.523,0.58]	chr1	13804	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	B4GALT2	ENSG00000117411.18	ENST00000498543.1:ENST00000434555.7:ENST00000372324.6:ENST00000481924.2:ENST00000497866.6:ENST00000485678.6:ENST00000356836.10:ENST00000309519.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	210	2	3.88687	4.5625800000000005	5.23829	0.0113547	6.29256e-5	0.0723462	0.0019359
chr22	33761758	33761858	7801283	0	-	0.42	(0.419,0.45]	chr22	817638	2	SS3_PROX	SS3_PROX:INTRON	LARGE1	ENSG00000133424.22	ENST00000397394.8:ENST00000413114.6:ENST00000676070.1:ENST00000674543.1:ENST00000676370.1:ENST00000354992.7:ENST00000402320.6:ENST00000675416.1:ENST00000676132.1:ENST00000674789.1:ENST00000675277.1:ENST00000434071.6:ENST00000432776.6:ENST00000423375.2:ENST00000430220.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.19215	4.562525	4.9329	0.0716557	0.0617113	0.18013	0.168159
chr7	132988264	132988363	3714914	0	-	0.424242	(0.419,0.45]	chr7	356873	126	INTRON	INTRON	CHCHD3	ENSG00000106554.13	ENST00000262570.10:ENST00000448878.6:ENST00000496427.5:ENST00000423635.5:ENST00000481152.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.19215	4.562525	4.9329	0.0716557	0.0617113	0.18013	0.168159
chr9	104830824	104830924	4361435	0	-	0.43	(0.419,0.45]	chr9	416350	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ABCA1	ENSG00000165029.17	ENST00000374736.8:ENST00000678995.1:ENST00000494467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.19215	4.562525	4.9329	0.0716557	0.0617113	0.18013	0.168159
chr9	105277178	105277278	4205921	0	+	0.43	(0.419,0.45]	chr9	399474	319	INTRON	INTRON	SLC44A1	ENSG00000070214.16	ENST00000374724.1:ENST00000374723.5:ENST00000470972.5:ENST00000374720.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.19215	4.562525	4.9329	0.0716557	0.0617113	0.18013	0.168159
chr11	70681416	70681516	5061093	0	-	0.55	(0.523,0.58]	chr11	492688	114	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.34118	4.56251	4.78384	0.0663135	0.0372357	0.162385	0.139793
chr18	13446901	13446999	7025045	0	+	0.571429	(0.523,0.58]	chr18	717583	27	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000610087.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.34118	4.56251	4.78384	0.0663135	0.0372357	0.162385	0.139793
chr2	240614691	240614791	1075086	0	+	0.66	(0.58,1]	chr2	116637	73	INTRON	INTRON	CAPN10:GPR35	ENSG00000142330.20:ENSG00000178623.13	ENST00000270364.11:ENST00000319838.10:ENST00000403859.1	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	3.56821	4.56251	5.55681	0.0126042	0.00550024	0.0761905	0.0454065
chr22	46646628	46646728	7744644	0	+	0.55	(0.523,0.58]	chr22	812052	83	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.34118	4.56251	4.78384	0.0663135	0.0372357	0.162385	0.139793
chr6	158586810	158586908	3064167	0	+	0.540816	(0.523,0.58]	chr6	297711	10	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.34118	4.56251	4.78384	0.0663135	0.0372357	0.162385	0.139793
chr7	47349544	47349643	3587286	0	-	0.545455	(0.523,0.58]	chr7	346030	28	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.34118	4.56251	4.78384	0.0663135	0.0372357	0.162385	0.139793
chrX	48806268	48806367	7879250	0	+	0.555556	(0.523,0.58]	chrX	826185	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HDAC6	ENSG00000094631.21	ENST00000376643.6:ENST00000469223.5:ENST00000376610.6:ENST00000483656.5:ENST00000462730.5:ENST00000376619.6:ENST00000477528.5:ENST00000334136.11:ENST00000646703.1:ENST00000477561.5:ENST00000643659.1:ENST00000643374.1:ENST00000644068.1:ENST00000643934.1:ENST00000443563.5:ENST00000440653.1:ENST00000468949.1:ENST00000647398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.34118	4.56251	4.78384	0.0663135	0.0372357	0.162385	0.139793
chr6	158027862	158027961	3059771	0	+	0.575758	(0.523,0.58]	chr6	297374	6	EXON_MRNA	EXON_MRNA:INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2:ENST00000640569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	79	2	3.27377	4.56232	5.85087	0.0137592	0.0132767	0.0814923	0.0787251
chr21	38807008	38807108	7620612	0	+	0.43	(0.419,0.45]	chr21	796137	2	SS5_PROX	SS5_PROX:INTRON	ETS2	ENSG00000157557.13	ENST00000360214.8:ENST00000665212.1:ENST00000667466.1:ENST00000360938.8:ENST00000432278.5:ENST00000666778.1	protein_coding	protein_coding	protein_coding	protein_coding	3	146	2	2.21336	4.562315	6.91127	0.0409409	0.00356503	0.147408	0.0383188
chr12	64683986	64684086	5251100	0	+	0.42	(0.419,0.45]	chr12	511993	610	INTRON	INTRON	RASSF3	ENSG00000153179.13	ENST00000637125.1:ENST00000542104.6:ENST00000283172.8:ENST00000336061.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	39	2	4.08324	4.561835	5.04043	0.0727147	0.0625897	0.199502	0.160305
chr15	55670944	55671044	6271464	0	-	0.33	(0.29,0.33]	chr15	618123	142	INTRON	INTRON	PRTG	ENSG00000166450.13	ENST00000389286.9:ENST00000561465.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.33251	4.56175	4.79099	0.061706	0.0396433	0.158854	0.143388
chr5	150028297	150028394	2564131	0	+	0.43299	(0.419,0.45]	chr5	254732	8	INTRON	INTRON	HMGXB3	ENSG00000113716.13	ENST00000613459.4:ENST00000503427.5:ENST00000502717.6:ENST00000514469.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	112	2	3.00342	4.56166	6.1199	0.0132894	0.0118386	0.0787251	0.0746945
chr16	85377041	85377141	6516841	0	+	0.44	(0.419,0.45]	chr16	646391	177	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	92	2	2.81936	4.56158	6.3038	0.0405181	0.00990101	0.145945	0.0671959
chr1	173204710	173204810	618737	0	-	0.46	(0.45,0.485]	chr1	73213	158	INTRON	INTRON	TNFSF4	ENSG00000117586.11	ENST00000281834.4:ENST00000367718.5:ENST00000488053.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.11446	4.561525	5.00859	0.0592571	0.052901	0.176157	0.14912
chr11	68267817	68267896	5057300	0	-	0.455696	(0.45,0.485]	chr11	492366	2	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C11orf24	ENSG00000171067.11	ENST00000304271.11:ENST00000533310.5:ENST00000530166.5:ENST00000527280.1:ENST00000529590.5:ENST00000532534.5:ENST00000532969.1:ENST00000529339.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	38	2	4.11446	4.561525	5.00859	0.0592571	0.052901	0.176157	0.14912
chr17	242038	242137	6820690	0	-	0.454545	(0.45,0.485]	chr17	689558	76	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000570893.5:ENST00000576001.5:ENST00000570954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.11446	4.561525	5.00859	0.0592571	0.052901	0.176157	0.14912
chr2	216099220	216099319	1023232	0	+	0.464646	(0.45,0.485]	chr2	111530	26	INTRON	INTRON	TMEM169	ENSG00000163449.11	ENST00000454545.5:ENST00000433112.5:ENST00000295658.8:ENST00000437356.7:ENST00000406027.2:ENST00000455479.5	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.11446	4.561525	5.00859	0.0592571	0.052901	0.176157	0.14912
chr21	38815281	38815381	7620701	0	+	0.47	(0.45,0.485]	chr21	796168	3	SS5_PROX	SS5_PROX:INTRON	ETS2	ENSG00000157557.13	ENST00000360214.8:ENST00000667466.1:ENST00000360938.8:ENST00000666778.1:ENST00000653642.1:ENST00000662305.1:ENST00000456966.1	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.11446	4.561525	5.00859	0.0592571	0.052901	0.176157	0.14912
chr4	183262814	183262912	2169043	0	+	0.479592	(0.45,0.485]	chr4	219558	9	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000448232.6:ENST00000513834.5:ENST00000427431.5:ENST00000438543.5:ENST00000504005.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	38	2	4.11446	4.561525	5.00859	0.0592571	0.052901	0.176157	0.14912
chr3	9468773	9468872	1402846	0	+	0.525253	(0.523,0.58]	chr3	150230	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000406341.5:ENST00000670063.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000466242.5:ENST00000682236.1:ENST00000421188.1:ENST00000687014.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	715	2	4.24566	4.561445	4.87723	0.00127845	1.3101e-5	0.0218002	6.23479e-4
chr1	1022562	1022662	940	0	+	0.59	(0.58,1]	chr1	165	1	SS5_PROX	SS5_PROX:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.29454	4.561035	4.82753	0.0427798	0.0305531	0.13762	0.126768
chr13	112979012	112979112	5655411	0	+	0.61	(0.58,1]	chr13	555120	92	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.29454	4.561035	4.82753	0.0427798	0.0305531	0.13762	0.126768
chr20	25548581	25548681	7540447	0	-	0.7	(0.58,1]	chr20	787074	216	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.29454	4.561035	4.82753	0.0427798	0.0305531	0.13762	0.126768
chr7	231027	231127	3305965	0	+	0.62	(0.58,1]	chr7	320161	217	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.29454	4.561035	4.82753	0.0427798	0.0305531	0.13762	0.126768
chr7	1010343	1010443	3526326	0	-	0.7	(0.58,1]	chr7	340571	2	SS3_PROX	SS3_PROX:INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.29454	4.561035	4.82753	0.0427798	0.0305531	0.13762	0.126768
chr7	74293527	74293627	3390216	0	+	0.59	(0.58,1]	chr7	327238	34	INTRON	INTRON	CLIP2	ENSG00000106665.16	ENST00000223398.11:ENST00000361545.9	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.29454	4.561035	4.82753	0.0427798	0.0305531	0.13762	0.126768
chrX	1443611	1443710	7965929	0	-	0.59596	(0.58,1]	chrX	834314	9	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9:ENST00000474865.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.29454	4.561035	4.82753	0.0427798	0.0305531	0.13762	0.126768
chr5	34174345	34174444	2634139	0	-	0.484848	(0.45,0.485]	chr5	261349	48	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000514048.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	81	2	3.22036	4.561015	5.90167	0.016408	0.0137135	0.0911382	0.0799457
chr11	70779156	70779256	5062073	0	-	0.5	(0.485,0.523]	chr11	492701	613	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.33772	4.56099	4.78426	0.0660335	0.03818	0.162385	0.140822
chr15	49010264	49010360	6252881	0	-	0.489583	(0.485,0.523]	chr15	615980	5	INTRON	INTRON	SECISBP2L	ENSG00000138593.9	ENST00000559471.6:ENST00000261847.7:ENST00000380927.6	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.33772	4.56099	4.78426	0.0660335	0.03818	0.162385	0.140822
chr2	236000409	236000509	1067620	0	+	0.51	(0.485,0.523]	chr2	115748	314	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5:ENST00000418654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.33772	4.56099	4.78426	0.0660335	0.03818	0.162385	0.140822
chr7	207900	207999	3305733	0	+	0.626263	(0.58,1]	chr7	320155	105	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6:ENST00000477004.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	72	2	3.52722	4.5608450000000005	5.59447	0.0117666	0.00611467	0.0737098	0.0489549
chr17	49665734	49665834	6925654	0	-	0.49	(0.485,0.523]	chr17	705495	183	INTRON	INTRON	SPOP	ENSG00000121067.19	ENST00000393328.6:ENST00000504102.6:ENST00000347630.6:ENST00000665825.1:ENST00000514121.6:ENST00000659760.1:ENST00000509079.6:ENST00000671445.1:ENST00000513080.6:ENST00000505581.5:ENST00000506399.5:ENST00000507970.5:ENST00000515508.6:ENST00000504212.5:ENST00000508805.5:ENST00000451526.6:ENST00000502385.1:ENST00000509765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	78	2	3.6472	4.560725	5.47425	0.0243396	0.00579534	0.106588	0.0472203
chr20	23388157	23388256	7537105	0	-	0.424242	(0.419,0.45]	chr20	786591	65	INTRON	INTRON	NAPB	ENSG00000125814.17	ENST00000398425.7:ENST00000432543.6:ENST00000617876.4:ENST00000377026.4:ENST00000472855.5:ENST00000468128.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	310	2	4.5026	4.56068	4.61876	0.00524811	1.80053e-4	0.0476984	0.00419938
chr21	41830821	41830921	7673630	0	-	0.66	(0.58,1]	chr21	801978	21	INTRON	INTRON	PRDM15	ENSG00000141956.14	ENST00000422911.6:ENST00000441787.5:ENST00000449395.6:ENST00000398548.6:ENST00000447016.6:ENST00000269844.5:ENST00000491486.5:ENST00000489661.5:ENST00000496124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	73	2	3.85993	4.560655	5.26138	0.021217	0.00251049	0.0996078	0.026941
chr9	126410090	126410190	4241463	0	+	0.49	(0.485,0.523]	chr9	402686	126	INTRON	INTRON	MVB12B	ENSG00000196814.15	ENST00000361171.8:ENST00000470567.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	78	2	3.4289	4.56045	5.692	0.0171772	0.00977282	0.0895975	0.0664239
chr20	348577	348662	7414003	0	+	0.505882	(0.485,0.523]	chr20	772227	2	SS5_PROX	SS5_PROX:INTRON	NRSN2	ENSG00000125841.13	ENST00000609179.5:ENST00000492242.5:ENST00000382291.7:ENST00000609504.5:ENST00000382285.7:ENST00000608467.5:ENST00000470439.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	283	2	4.27883	4.560405	4.84198	0.00550526	5.32834e-5	0.0489901	0.00172247
chr11	70764867	70764967	5061930	0	-	0.45	(0.419,0.45]	chr11	492701	470	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	146	2	3.01641	4.560255	6.1041	0.030547499999999998	0.00123471	0.118898	0.0164614
chr2	10346445	10346544	718863	0	+	0.484848	(0.45,0.485]	chr2	84026	159	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.22352	4.560185	4.89685	0.0614781	0.0496712	0.160725	0.158506
chr1	9309277	9309377	19747	0	+	0.53	(0.523,0.58]	chr1	2205	143	INTRON	INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11:ENST00000450402.1	protein_coding	protein_coding	protein_coding	protein_coding	2	104	2	3.15279	4.559765	5.96674	0.0109075	0.00667201	0.0707085	0.0517092
chr7	240206	240306	3306057	0	+	0.24	[0,0.29]	chr7	320161	309	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	4.06519	4.55964	5.05409	0.0318802	0.00176173	0.12158	0.0211113
chr14	35314554	35314654	5780580	0	+	0.31	(0.29,0.33]	chr14	566696	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ENSG00000258790:PSMA6	ENSG00000258790.1:ENSG00000100902.11	ENST00000557565.1:ENST00000540871.5:ENST00000622405.4:ENST00000554541.5:ENST00000261479.9:ENST00000554961.5:ENST00000553809.5:ENST00000555764.5:ENST00000556506.1:ENST00000556221.1:ENST00000554457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	78	2	3.52516	4.55961	5.59406	0.0184845	0.0079683	0.0928429	0.0579377
chr2	36535165	36535264	759449	0	+	0.585859	(0.58,1]	chr2	88048	58	INTRON	INTRON	CRIM1	ENSG00000150938.10	ENST00000280527.7	protein_coding	protein_coding	protein_coding	protein_coding	1	92	2	3.70825	4.559595	5.41094	0.0111705	0.00240622	0.0716525	0.0261006
chr15	40108525	40108614	6235245	0	-	0.606742	(0.58,1]	chr15	613050	4	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BMF	ENSG00000104081.14	ENST00000354670.9:ENST00000558774.5:ENST00000559701.5:ENST00000557870.1:ENST00000560430.1:ENST00000558057.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	110	2	2.43115	4.55957	6.68799	0.0309513	0.00130716	0.127822	0.0220198
chr16	85588930	85589030	6518962	0	+	0.47	(0.45,0.485]	chr16	646396	322	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	3	292	2	3.9339	4.55925	5.1846	0.00511245	9.0128e-5	0.0468942	0.00252994
chr2	216031089	216031189	1369595	0	-	0.5	(0.485,0.523]	chr2	145850	176	INTRON	INTRON	MREG:PECR	ENSG00000118242.16:ENSG00000115425.14	ENST00000439791.5:ENST00000424992.5:ENST00000420348.1:ENST00000442122.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	153	2	3.50215	4.55917	5.61619	0.0104093	0.00247695	0.0687179	0.0266492
chr19	3528014	3528114	7191578	0	+	0.73	(0.58,1]	chr19	732248	2	SS5_PROX	SS5_PROX:INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	74	2	3.25332	4.559115	5.86491	0.0120565	0.00707578	0.0754623	0.0558168
chr2	240625968	240626068	1075203	0	+	0.61	(0.58,1]	chr2	116657	4	SS5_PROX	SS5_PROX:INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2:ENST00000407714.2	protein_coding	protein_coding	protein_coding	protein_coding	2	98	2	2.89926	4.55889	6.21852	0.0102831	0.00350812	0.0678667	0.0379357
chr3	105847934	105848034	1862765	0	-	0.36	(0.33,0.36]	chr3	189853	81	INTRON	INTRON	CBLB	ENSG00000114423.23	ENST00000645759.1:ENST00000394030.8:ENST00000646499.1:ENST00000645425.1:ENST00000646825.1:ENST00000643322.1:ENST00000403724.5:ENST00000405772.5:ENST00000447441.6:ENST00000643403.1:ENST00000438603.6:ENST00000443752.2:ENST00000643192.1:ENST00000642907.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	299	2	4.13043	4.558814999999999	4.9872	0.0016348	5.87841e-4	0.0250756	0.009801
chr11	70534830	70534930	5059621	0	-	0.54	(0.523,0.58]	chr11	492663	315	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	78	2	3.35934	4.55838	5.75742	0.0155135	0.0113252	0.0849828	0.071894
chr6	144848117	144848216	3025581	0	+	0.535354	(0.523,0.58]	chr6	295591	9	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000367526.8	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	3.35934	4.55838	5.75742	0.0155135	0.0113252	0.0849828	0.071894
chr17	14397472	14397572	6683511	0	+	0.26	[0,0.29]	chr17	670767	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000230647	ENSG00000230647.2	ENST00000436469.1:ENST00000655690.1	lncRNA	lncRNA	lncRNA	lncRNA	1	88	2	3.03307	4.558355	6.08364	0.0392937	5.75832e-4	0.132397	0.00963379
chr17	29130688	29130785	6876469	0	-	0.536082	(0.523,0.58]	chr17	697994	18	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000590242.5:ENST00000528564.2:ENST00000528322.6:ENST00000585573.6:ENST00000533420.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	188	2	2.6173	4.55827	6.49924	0.0286934	2.16101e-4	0.115886	0.00477041
chr16	85232965	85233065	6515398	0	+	0.65	(0.58,1]	chr16	646377	52	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	102	2	4.03107	4.558205	5.08534	0.00585987	0.00549379	0.0506158	0.0454065
chr2	147881721	147881821	912848	0	+	0.27	[0,0.29]	chr2	102444	43	INTRON	INTRON	ACVR2A	ENSG00000121989.15	ENST00000535787.5:ENST00000487959.5:ENST00000462659.1:ENST00000404590.1:ENST00000241416.12:ENST00000465329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	79	2	3.08401	4.55811	6.03221	0.0199046	0.00561175	0.100864	0.0493906
chr2	121338869	121338969	1261066	0	-	0.39	(0.36,0.39]	chr2	135874	12	UTR3	UTR3:EXON_MRNA	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8	protein_coding	protein_coding	protein_coding	protein_coding	1	82	2	3.34723	4.55808	5.76893	0.0200694	0.0136148	0.0971995	0.0811697
chr2	138572554	138572653	904606	0	+	0.343434	(0.33,0.36]	chr2	101987	36	UTR3	UTR3:EXON_MRNA:INTRON	SPOPL:ENSG00000241772	ENSG00000144228.9:ENSG00000241772.2	ENST00000280098.9:ENST00000458007.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	0	36	2	4.40703	4.557985	4.70894	0.0798152	0.0390931	0.176933	0.142605
chr10	103595424	103595523	4756036	0	-	0.535354	(0.523,0.58]	chr10	454714	15	UTR3	UTR3:EXON_MRNA	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9	protein_coding	protein_coding	protein_coding	protein_coding	3	127	2	2.59975	4.557745	6.51574	0.0152448	0.00409625	0.0863685	0.0413652
chr13	46575302	46575402	5584127	0	+	0.4	(0.39,0.419]	chr13	550714	212	INTRON	INTRON	LRCH1	ENSG00000136141.15	ENST00000311191.10:ENST00000389797.8:ENST00000443945.6:ENST00000389798.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.48504	4.557705	4.63037	0.0963077	0.0364893	0.189169	0.139793
chr2	72311675	72311775	1183038	0	-	0.4	(0.39,0.419]	chr2	128650	484	INTRON	INTRON	EXOC6B	ENSG00000144036.16	ENST00000272427.11:ENST00000490919.5:ENST00000471335.5:ENST00000634650.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.48504	4.557705	4.63037	0.0963077	0.0364893	0.189169	0.139793
chr3	47955210	47955309	1764610	0	-	0.414141	(0.39,0.419]	chr3	181976	265	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000683076.1:ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000633710.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.48504	4.557705	4.63037	0.0963077	0.0364893	0.189169	0.139793
chr7	40330444	40330544	3355821	0	+	0.4	(0.39,0.419]	chr7	324345	132	INTRON	INTRON	SUGCT	ENSG00000175600.16	ENST00000335693.9:ENST00000401647.7:ENST00000628514.3:ENST00000416370.2:ENST00000488110.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.48504	4.557705	4.63037	0.0963077	0.0364893	0.189169	0.139793
chr7	128036208	128036308	3472095	0	+	0.4	(0.39,0.419]	chr7	335440	277	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.48504	4.557705	4.63037	0.0963077	0.0364893	0.189169	0.139793
chr9	123658680	123658779	4399171	0	-	0.414141	(0.39,0.419]	chr9	419686	62	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1:ENST00000474676.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.48504	4.557705	4.63037	0.0963077	0.0364893	0.189169	0.139793
chrX	51873450	51873550	7882328	0	+	0.41	(0.39,0.419]	chrX	826505	700	INTRON	INTRON	MAGED1	ENSG00000179222.18	ENST00000375772.7	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.48504	4.557705	4.63037	0.0963077	0.0364893	0.189169	0.139793
chr1	2182414	2182512	4460	0	+	0.653061	(0.58,1]	chr1	1030	1	INTRON	INTRON	PRKCZ	ENSG00000067606.17	ENST00000378567.8:ENST00000400921.6:ENST00000461106.6:ENST00000479263.5:ENST00000478770.6:ENST00000505322.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.49116	4.557595	4.62403	0.0578275	0.0207449	0.154343	0.102713
chr1	16630245	16630341	406295	0	-	0.677083	(0.58,1]	chr1	46865	7	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	CROCCP2	ENSG00000215908.10	ENST00000639594.1:ENST00000639456.1:ENST00000412962.4:ENST00000635081.1:ENST00000362058.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	34	2	4.49116	4.557595	4.62403	0.0578275	0.0207449	0.154343	0.102713
chr1	207752809	207752906	328839	0	+	0.587629	(0.58,1]	chr1	37180	1	INTRON	INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000493796.5:ENST00000360212.6:ENST00000480003.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.49116	4.557595	4.62403	0.0578275	0.0207449	0.154343	0.102713
chr10	79244437	79244537	4533806	0	+	0.59	(0.58,1]	chr10	432461	3	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10:ENST00000472035.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.49116	4.557595	4.62403	0.0578275	0.0207449	0.154343	0.102713
chr11	64307006	64307067	4868824	0	+	0.606557	(0.58,1]	chr11	467350	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ESRRA	ENSG00000173153.17	ENST00000406310.6:ENST00000000442.11:ENST00000677967.1:ENST00000539594.5:ENST00000405666.5:ENST00000468670.2	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.49116	4.557595	4.62403	0.0578275	0.0207449	0.154343	0.102713
chr11	70685307	70685407	5061132	0	-	0.6	(0.58,1]	chr11	492688	153	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.49116	4.557595	4.62403	0.0578275	0.0207449	0.154343	0.102713
chr13	113041775	113041875	5656049	0	+	0.68	(0.58,1]	chr13	555168	1	SS3_PROX	SS3_PROX:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000480321.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.49116	4.557595	4.62403	0.0578275	0.0207449	0.154343	0.102713
chr19	48903555	48903652	7280379	0	+	0.608247	(0.58,1]	chr19	748036	21	INTRON	INTRON	NUCB1	ENSG00000104805.16	ENST00000405315.9:ENST00000407032.5:ENST00000452087.5:ENST00000485798.5:ENST00000443560.1:ENST00000411700.5:ENST00000451312.5:ENST00000424608.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.49116	4.557595	4.62403	0.0578275	0.0207449	0.154343	0.102713
chr7	152839171	152839271	3518328	0	+	0.61	(0.58,1]	chr7	339750	137	INTRON	INTRON	ACTR3B	ENSG00000133627.18	ENST00000377776.7:ENST00000256001.13:ENST00000397282.2:ENST00000479402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.49116	4.557595	4.62403	0.0578275	0.0207449	0.154343	0.102713
chr8	142380905	142381005	4094861	0	-	0.6	(0.58,1]	chr8	389043	145	INTRON	INTRON	TSNARE1	ENSG00000171045.16	ENST00000524325.6:ENST00000307180.4:ENST00000519651.5:ENST00000520462.5:ENST00000518720.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.49116	4.557595	4.62403	0.0578275	0.0207449	0.154343	0.102713
chr9	83450137	83450236	4325050	0	-	0.59596	(0.58,1]	chr9	413145	601	INTRON	INTRON	FRMD3	ENSG00000172159.16	ENST00000376438.5:ENST00000304195.8:ENST00000621208.4	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.49116	4.557595	4.62403	0.0578275	0.0207449	0.154343	0.102713
chr11	70810768	70810868	5062391	0	-	0.58	(0.523,0.58]	chr11	492713	32	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.50593	4.5573049999999995	4.60868	0.094303	0.0226775	0.188571	0.108193
chr16	89124416	89124515	6523021	0	+	0.555556	(0.523,0.58]	chr16	647012	17	INTRON	INTRON	ACSF3	ENSG00000176715.17	ENST00000317447.9:ENST00000614302.5:ENST00000540697.5:ENST00000406948.7:ENST00000378345.8:ENST00000542688.5:ENST00000649953.1:ENST00000544543.5:ENST00000562204.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.50593	4.5573049999999995	4.60868	0.094303	0.0226775	0.188571	0.108193
chr17	18019377	18019473	6866321	0	-	0.5625	(0.523,0.58]	chr17	695953	3	INTRON	INTRON	ATPAF2	ENSG00000171953.16	ENST00000584205.5:ENST00000462733.5:ENST00000585101.5:ENST00000474627.8:ENST00000496852.5:ENST00000467560.5:ENST00000581698.1:ENST00000469327.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.50593	4.5573049999999995	4.60868	0.094303	0.0226775	0.188571	0.108193
chr18	12993333	12993433	7021350	0	+	0.53	(0.523,0.58]	chr18	717242	15	INTRON	INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000507064.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.50593	4.5573049999999995	4.60868	0.094303	0.0226775	0.188571	0.108193
chr9	35727712	35727811	4298421	0	-	0.535354	(0.523,0.58]	chr9	411216	16	INTRON	INTRON	TLN1	ENSG00000137076.21	ENST00000314888.10:ENST00000378192.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.50593	4.5573049999999995	4.60868	0.094303	0.0226775	0.188571	0.108193
chr19	7907364	7907463	7199677	0	+	0.646465	(0.58,1]	chr19	734084	4	INTRON	INTRON	MAP2K7	ENSG00000076984.18	ENST00000397981.7:ENST00000397979.4:ENST00000468058.1:ENST00000397983.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	97	2	2.97017	4.55722	6.14427	0.00858469	0.00407804	0.0612699	0.0413652
chr15	25016594	25016693	6064019	0	+	0.424242	(0.419,0.45]	chr15	595414	15	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	1	83	2	3.59354	4.557135000000001	5.52073	0.0327198	0.00820853	0.122543	0.0592025
chr16	81479877	81479976	6508090	0	+	0.414141	(0.39,0.419]	chr16	645906	340	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	1	83	2	3.22582	4.55704	5.88826	0.0176855	0.0169925	0.093839	0.0889149
chr4	38915672	38915772	2031421	0	+	0.4	(0.39,0.419]	chr4	207358	2	INTRON	INTRON	FAM114A1	ENSG00000197712.12	ENST00000515037.5:ENST00000358869.5:ENST00000512889.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	118	2	3.90045	4.556945000000001	5.21344	0.0135217	0.00893514	0.0792629	0.0620271
chr10	99424881	99424980	4745004	0	-	0.414141	(0.39,0.419]	chr10	453273	37	INTRON	INTRON	GOT1	ENSG00000120053.12	ENST00000370508.7:ENST00000471741.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	137	2	3.16872	4.55687	5.94502	0.0155393	0.00457998	0.0849828	0.0404432
chr3	57069350	57069450	1789560	0	-	0.41	(0.39,0.419]	chr3	186486	338	INTRON	INTRON	ARHGEF3	ENSG00000163947.12	ENST00000338458.8:ENST00000468727.5:ENST00000477833.5:ENST00000477440.6:ENST00000468466.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	82	2	3.6226	4.55674	5.49088	0.0309972	0.0073612	0.119758	0.055174
chr2	238269074	238269174	1388924	0	-	0.29	[0,0.29]	chr2	148517	1	SS3_PROX	SS3_PROX:INTRON	PER2	ENSG00000132326.12	ENST00000254657.8:ENST00000355768.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.35679	4.55653	4.75627	0.050276	0.0332741	0.148161	0.133139
chr4	146467490	146467590	2336099	0	-	0.29	[0,0.29]	chr4	234367	243	INTRON	INTRON	SLC10A7	ENSG00000120519.16	ENST00000432059.6:ENST00000335472.12:ENST00000693222.1:ENST00000507030.5:ENST00000511315.2:ENST00000507560.5:ENST00000685433.1:ENST00000394059.8:ENST00000511374.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.35679	4.55653	4.75627	0.050276	0.0332741	0.148161	0.133139
chr18	48847309	48847408	7059751	0	+	0.30303	(0.29,0.33]	chr18	720358	296	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000587860.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.51301	4.55647	4.59993	0.0885563	0.0243639	0.183874	0.113231
chr6	157451230	157451330	3054542	0	+	0.31	(0.29,0.33]	chr6	297167	686	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.51301	4.55647	4.59993	0.0885563	0.0243639	0.183874	0.113231
chr7	74668363	74668463	3393063	0	+	0.32	(0.29,0.33]	chr7	327508	99	INTRON	INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000613513.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.51301	4.55647	4.59993	0.0885563	0.0243639	0.183874	0.113231
chr21	43975461	43975561	7625546	0	+	0.5	(0.485,0.523]	chr21	796959	36	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000398061.5:ENST00000327505.6:ENST00000398063.6:ENST00000398058.5:ENST00000546158.1:ENST00000479117.5:ENST00000467358.5:ENST00000484865.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	94	2	3.04904	4.55646	6.06388	0.0457169	7.70737e-4	0.142336	0.0118331
chr11	68352500	68352599	4882483	0	+	0.535354	(0.523,0.58]	chr11	470548	39	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	102	2	3.66398	4.556215	5.44845	0.0167995	0.00361636	0.0884836	0.0342681
chr4	75665613	75665711	2251149	0	-	0.387755	(0.36,0.39]	chr4	227151	24	INTRON	INTRON	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1:ENST00000503660.5:ENST00000678670.1:ENST00000502654.5:ENST00000507745.5:ENST00000513927.1:ENST00000511146.5:ENST00000507252.5:ENST00000507701.1:ENST00000499709.3:ENST00000511868.6:ENST00000508510.6:ENST00000676702.1:ENST00000677145.1:ENST00000509561.6:ENST00000677489.1:ENST00000678389.1:ENST00000676485.1:ENST00000678908.1:ENST00000678843.1:ENST00000676641.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	224	2	4.36253	4.55583	4.74913	0.00598855	4.0985e-4	0.0508687	0.00761171
chr12	50426066	50426165	5228894	0	+	0.50505	(0.485,0.523]	chr12	507611	48	INTRON	INTRON	LARP4	ENSG00000161813.23	ENST00000550522.5:ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000548174.5:ENST00000548697.5:ENST00000548993.5:ENST00000522085.5:ENST00000518444.5:ENST00000551886.5:ENST00000523389.5:ENST00000518561.5:ENST00000347328.9:ENST00000550260.1:ENST00000517559.5:ENST00000552445.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.50634	4.555759999999999	4.60518	0.0939553	0.0233371	0.188571	0.110098
chr15	85101891	85101990	6175810	0	+	0.494949	(0.485,0.523]	chr15	607449	13	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5:ENST00000560789.5:ENST00000557819.6:ENST00000558543.5:ENST00000557954.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.50634	4.555759999999999	4.60518	0.0939553	0.0233371	0.188571	0.110098
chr3	51667479	51667578	1472215	0	+	0.494949	(0.485,0.523]	chr3	157989	42	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.50634	4.555759999999999	4.60518	0.0939553	0.0233371	0.188571	0.110098
chr19	35004223	35004323	7244902	0	+	0.46	(0.45,0.485]	chr19	742073	10	INTRON	INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	105	2	3.67914	4.55543	5.43172	0.0174714	0.00440365	0.0903552	0.0393688
chr17	32552432	32552532	6884061	0	-	0.52	(0.485,0.523]	chr17	698835	555	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000577352.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	80	2	3.17158	4.55532	5.93906	0.017456	0.0113657	0.0928044	0.0723462
chr2	235512933	235513033	1062725	0	+	0.51	(0.485,0.523]	chr2	115651	177	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	80	2	3.17158	4.55532	5.93906	0.017456	0.0113657	0.0928044	0.0723462
chr10	79205063	79205162	4533409	0	+	0.444444	(0.419,0.45]	chr10	432445	30	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.29342	4.555065	4.81671	0.08258	0.0526662	0.179396	0.167062
chr18	74765937	74766037	7090934	0	+	0.42	(0.419,0.45]	chr18	722426	1245	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000582337.5:ENST00000309902.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.29342	4.555065	4.81671	0.08258	0.0526662	0.179396	0.167062
chr8	38759407	38759506	3802149	0	+	0.444444	(0.419,0.45]	chr8	365828	16	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.29342	4.555065	4.81671	0.08258	0.0526662	0.179396	0.167062
chr19	57694037	57694137	7298433	0	+	0.54	(0.523,0.58]	chr19	751723	35	INTRON	INTRON	ZNF551	ENSG00000204519.11	ENST00000596085.1	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	3.229	4.55486	5.88072	0.0152072	0.0126258	0.0861813	0.0761905
chr1	78133206	78133305	165140	0	+	0.333333	(0.33,0.36]	chr1	18816	69	INTRON	INTRON	GIPC2	ENSG00000137960.6	ENST00000370759.4	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.102	4.55421	5.00642	0.0642879	0.0542065	0.184676	0.151733
chr7	139682168	139682268	3722967	0	-	0.49	(0.485,0.523]	chr7	357498	501	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	4	145	2	2.88671	4.554205	6.2217	0.00693912	0.00545787	0.0553898	0.0454065
chr9	5722343	5722442	4112492	0	+	0.454545	(0.45,0.485]	chr9	391557	12	INTRON	INTRON	RIC1	ENSG00000107036.12	ENST00000251879.10:ENST00000414202.7:ENST00000418622.7:ENST00000545641.5:ENST00000276898.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	96	2	3.14934	4.55414	5.95894	0.0410767	0.00119342	0.136301	0.016037
chr6	43050498	43050590	3135534	0	-	0.434783	(0.419,0.45]	chr6	305972	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CUL7	ENSG00000044090.13	ENST00000265348.9:ENST00000690231.1:ENST00000685042.1:ENST00000689256.1:ENST00000674112.2:ENST00000674134.1:ENST00000674100.1:ENST00000686442.1:ENST00000688302.1:ENST00000673753.1:ENST00000687225.1:ENST00000688707.1:ENST00000683493.1:ENST00000683160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	83	2	3.31626	4.55357	5.79088	0.022052	0.0150971	0.101502	0.0857427
chr13	113049425	113049524	5656129	0	+	0.565657	(0.523,0.58]	chr13	555180	22	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	81	2	3.08569	4.55353	6.02137	0.020773	0.00992924	0.102713	0.0671959
chr3	152358006	152358106	1599280	0	+	0.4	(0.39,0.419]	chr3	168991	224	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	3.95866	4.553445	5.14823	0.0501234	0.00329322	0.147892	0.0323365
chr5	883450	883547	2608211	0	-	0.587629	(0.58,1]	chr5	259478	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000466684.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	86	2	3.35086	4.552960000000001	5.75506	0.0218816	9.38062e-4	0.101015	0.0135546
chr5	139657557	139657656	2549736	0	+	0.585859	(0.58,1]	chr5	253168	60	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	3.35086	4.552960000000001	5.75506	0.0218816	9.38062e-4	0.101015	0.0135546
chr2	235514232	235514331	1062738	0	+	0.353535	(0.33,0.36]	chr2	115651	190	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.211	4.55284	4.89468	0.0629186	0.0541541	0.167824	0.160778
chr6	130848069	130848168	3260007	0	-	0.353535	(0.33,0.36]	chr6	315433	71	INTRON	INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000528282.5:ENST00000531410.5:ENST00000452150.6:ENST00000392427.7:ENST00000530757.5:ENST00000368128.6:ENST00000527411.5:ENST00000524581.5:ENST00000525271.5:ENST00000526782.1:ENST00000368126.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.211	4.55284	4.89468	0.0629186	0.0541541	0.167824	0.160778
chr7	35825155	35825255	3344138	0	+	0.34	(0.33,0.36]	chr7	323587	235	INTRON	INTRON	SEPTIN7	ENSG00000122545.21	ENST00000399034.7:ENST00000435235.6:ENST00000350320.11:ENST00000672279.1:ENST00000634600.1:ENST00000635669.1:ENST00000635175.1:ENST00000475109.5:ENST00000635047.1:ENST00000493626.5:ENST00000473201.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.211	4.55284	4.89468	0.0629186	0.0541541	0.167824	0.160778
chr11	17909804	17909904	5014335	0	-	0.57	(0.523,0.58]	chr11	484610	312	INTRON	INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528369.5:ENST00000528200.5:ENST00000529440.5:ENST00000529151.5:ENST00000532546.5:ENST00000525920.5:ENST00000532265.5:ENST00000533241.1:ENST00000525168.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.5249	4.55274	4.58058	0.0860403	0.0266135	0.181766	0.118113
chr11	71250424	71250524	5066808	0	-	0.58	(0.523,0.58]	chr11	492812	96	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.5249	4.55274	4.58058	0.0860403	0.0266135	0.181766	0.118113
chr13	111185129	111185225	5651299	0	+	0.53125	(0.523,0.58]	chr13	554735	3	UTR5	UTR5:EXON_MRNA:INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000449979.5:ENST00000491775.5:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8:ENST00000467053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.5249	4.55274	4.58058	0.0860403	0.0266135	0.181766	0.118113
chr16	16037301	16037400	6406882	0	+	0.535354	(0.523,0.58]	chr16	633041	3	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.5249	4.55274	4.58058	0.0860403	0.0266135	0.181766	0.118113
chr16	81687988	81688088	6510191	0	+	0.56	(0.523,0.58]	chr16	645979	90	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.5249	4.55274	4.58058	0.0860403	0.0266135	0.181766	0.118113
chr22	42985936	42986036	7823992	0	-	0.58	(0.523,0.58]	chr22	820626	262	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.5249	4.55274	4.58058	0.0860403	0.0266135	0.181766	0.118113
chr4	153488684	153488784	2151105	0	+	0.53	(0.523,0.58]	chr4	217962	144	INTRON	INTRON	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000445960.5:ENST00000409959.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.5249	4.55274	4.58058	0.0860403	0.0266135	0.181766	0.118113
chr7	47528335	47528435	3589096	0	-	0.55	(0.523,0.58]	chr7	346138	210	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.5249	4.55274	4.58058	0.0860403	0.0266135	0.181766	0.118113
chr6	48091526	48091626	3146866	0	-	0.41	(0.39,0.419]	chr6	306795	212	INTRON	INTRON	PTCHD4:ENSG00000286811	ENSG00000244694.8:ENSG00000286811.1	ENST00000339488.9:ENST00000398738.3:ENST00000679966.1:ENST00000661865.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	6	198	2	2.88237	4.5525	6.22263	0.00991891	0.0045445	0.0671959	0.0401487
chr6	37994991	37995091	2910596	0	+	0.42	(0.419,0.45]	chr6	285651	646	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5:ENST00000373389.5	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	4.1167299999999996	4.552199999999999	4.98767	0.0669167	0.00235149	0.16272	0.0258525
chr8	122878031	122878131	3910626	0	+	0.38	(0.36,0.39]	chr8	373489	141	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6:ENST00000534247.1	protein_coding	protein_coding	protein_coding	protein_coding	2	140	2	2.96293	4.5518350000000005	6.14074	0.0310807	0.0010006	0.119828	0.0142243
chr1	109621422	109621522	202618	0	+	0.64	(0.58,1]	chr1	22193	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	AMPD2	ENSG00000116337.20	ENST00000531734.6:ENST00000655992.1:ENST00000474459.6:ENST00000342115.8:ENST00000528667.7:ENST00000667949.2:ENST00000680519.1:ENST00000680192.1:ENST00000531203.6:ENST00000256578.8:ENST00000681246.1:ENST00000525415.2:ENST00000680170.1:ENST00000679880.1:ENST00000679593.1:ENST00000681108.1:ENST00000681132.1:ENST00000679892.1:ENST00000680929.1:ENST00000680531.1:ENST00000680132.1:ENST00000681181.1:ENST00000680820.1:ENST00000680148.1:ENST00000679981.1:ENST00000681496.1:ENST00000681862.1:ENST00000680832.1:ENST00000681834.1:ENST00000681218.1:ENST00000679379.1:ENST00000652975.2:ENST00000486282.7:ENST00000369840.7:ENST00000528270.6:ENST00000663749.1:ENST00000668421.1:ENST00000659122.2:ENST00000358729.9:ENST00000476688.3:ENST00000526301.6:ENST00000527846.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	75	2	3.1491	4.551819999999999	5.95454	0.0154006	0.0059453	0.0869771	0.0506158
chr12	132780397	132780497	5540255	0	-	0.54	(0.523,0.58]	chr12	546770	2	SS5_PROX	SS5_PROX:INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	77	2	3.51663	4.551715	5.5868	0.020474	0.00782908	0.0979776	0.0574276
chr21	35442269	35442369	7661382	0	-	0.53	(0.523,0.58]	chr21	801090	28	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000475045.6:ENST00000467692.5:ENST00000494829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	106	2	3.79814	4.551645000000001	5.30515	0.0132922	0.00509102	0.0787251	0.0433513
chr19	57440018	57440115	7297078	0	+	0.474227	(0.45,0.485]	chr19	751501	17	INTRON	INTRON	ZNF749	ENSG00000186230.7	ENST00000334181.5:ENST00000415248.1	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	3.38668	4.551635	5.71659	0.018513	0.0113463	0.0928429	0.0719708
chr17	17823217	17823317	6865753	0	-	0.55	(0.523,0.58]	chr17	695916	3	SS5_PROX	SS5_PROX:INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	135	2	3.09615	4.55158	6.00701	0.0215502	8.61362e-4	0.100612	0.0127848
chr13	50536856	50536956	5597993	0	+	0.49	(0.485,0.523]	chr13	551685	31	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1:ENST00000484869.6	lncRNA	lncRNA	lncRNA	lncRNA	1	86	2	2.85817	4.5515099999999995	6.24485	0.0334631	0.00665813	0.133139	0.0540577
chr1	111725106	111725204	561649	0	-	0.520408	(0.485,0.523]	chr1	64439	21	UTR3	UTR3:EXON_MRNA:INTRON	INKA2	ENSG00000197852.12	ENST00000527570.1:ENST00000357260.6:ENST00000534365.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.52142	4.55121	4.581	0.085711	0.0273555	0.181766	0.119337
chr1	210654219	210654319	332874	0	+	0.49	(0.485,0.523]	chr1	37390	302	INTRON	INTRON	HHAT	ENSG00000054392.13	ENST00000541565.5:ENST00000413764.6:ENST00000261458.8:ENST00000537898.5:ENST00000545154.5:ENST00000367010.5:ENST00000367009.2	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.52142	4.55121	4.581	0.085711	0.0273555	0.181766	0.119337
chr10	77793321	77793414	4718253	0	-	0.516129	(0.485,0.523]	chr10	450099	4	INTRON	INTRON	DLG5	ENSG00000151208.17	ENST00000372391.7:ENST00000475613.6:ENST00000424842.5:ENST00000463362.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.52142	4.55121	4.581	0.085711	0.0273555	0.181766	0.119337
chr18	76394889	76394989	7179068	0	-	0.49	(0.485,0.523]	chr18	730080	142	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.52142	4.55121	4.581	0.085711	0.0273555	0.181766	0.119337
chr22	42990325	42990425	7824036	0	-	0.49	(0.485,0.523]	chr22	820626	306	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.52142	4.55121	4.581	0.085711	0.0273555	0.181766	0.119337
chr9	133856284	133856384	4428961	0	-	0.5	(0.485,0.523]	chr9	423304	216	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.52142	4.55121	4.581	0.085711	0.0273555	0.181766	0.119337
chr9	123526092	123526192	4397837	0	-	0.52	(0.485,0.523]	chr9	419652	401	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	215	2	4.45366	4.550695	4.64773	0.00271181	6.79828e-4	0.0331122	0.0108531
chr11	3819823	3819923	4788264	0	+	0.47	(0.45,0.485]	chr11	458840	19	INTRON	INTRON	PGAP2	ENSG00000148985.20	ENST00000528216.5:ENST00000300730.10:ENST00000396986.6:ENST00000532535.5:ENST00000396993.8:ENST00000465237.6:ENST00000477358.6:ENST00000532523.5:ENST00000459679.5:ENST00000464229.5:ENST00000490830.5:ENST00000464261.5:ENST00000464906.6:ENST00000524661.5:ENST00000485602.5:ENST00000475884.5:ENST00000489571.5:ENST00000464441.5:ENST00000532017.5:ENST00000465307.6:ENST00000493547.6:ENST00000495026.5:ENST00000534498.1:ENST00000396991.6:ENST00000525937.1:ENST00000478773.5:ENST00000278243.9:ENST00000483829.5:ENST00000487112.5:ENST00000463452.6:ENST00000496834.6:ENST00000479072.5:ENST00000469307.4:ENST00000464590.1:ENST00000529944.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	98	2	2.73276	4.550465	6.36817	0.0754102	3.97249e-4	0.173278	0.00741985
chr1	30933742	30933842	434611	0	-	0.58	(0.523,0.58]	chr1	51445	4	SS3_PROX	SS3_PROX:INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000530669.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	104	2	2.9514	4.550455	6.14951	0.0109262	0.00793972	0.0706366	0.0596361
chr12	42451310	42451410	5206009	0	+	0.46	(0.45,0.485]	chr12	506112	28	INTRON	INTRON	PPHLN1	ENSG00000134283.18	ENST00000317560.13	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.32491	4.55031	4.77571	0.0719884	0.0418883	0.168159	0.149021
chr17	759797	759891	6824563	0	-	0.478723	(0.45,0.485]	chr17	689945	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	GLOD4	ENSG00000167699.14	ENST00000575800.1:ENST00000571073.5:ENST00000301329.11:ENST00000301328.9:ENST00000576239.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.32491	4.55031	4.77571	0.0719884	0.0418883	0.168159	0.149021
chr2	237711985	237712084	1070688	0	+	0.474747	(0.45,0.485]	chr2	115988	30	INTRON	INTRON	LRRFIP1	ENSG00000124831.19	ENST00000308482.14:ENST00000465870.5:ENST00000498053.5:ENST00000289175.10:ENST00000244815.9:ENST00000420665.5:ENST00000392000.4:ENST00000473815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.32491	4.55031	4.77571	0.0719884	0.0418883	0.168159	0.149021
chr2	241758613	241758712	1078979	0	+	0.464646	(0.45,0.485]	chr2	117347	22	INTRON	INTRON	D2HGDH	ENSG00000180902.18	ENST00000403782.5:ENST00000436747.5:ENST00000321264.9:ENST00000400769.6:ENST00000486953.5:ENST00000470343.5:ENST00000473126.1:ENST00000468064.5:ENST00000445308.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.32491	4.55031	4.77571	0.0719884	0.0418883	0.168159	0.149021
chr3	184318316	184318412	1643909	0	+	0.46875	(0.45,0.485]	chr3	172593	1	INTRON	INTRON	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000444134.5:ENST00000442406.5:ENST00000450424.5:ENST00000421110.5:ENST00000435046.7:ENST00000382330.7:ENST00000413967.5:ENST00000426123.5:ENST00000346169.7:ENST00000350481.9:ENST00000440448.5:ENST00000427141.6:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000456033.5:ENST00000411531.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.32491	4.55031	4.77571	0.0719884	0.0418883	0.168159	0.149021
chr1	8463870	8463970	392176	0	-	0.43	(0.419,0.45]	chr1	44985	252	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000656437.1:ENST00000464972.5:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.47684	4.549785	4.62273	0.103601	0.0389508	0.197541	0.142578
chr11	70720900	70721000	5061490	0	-	0.44	(0.419,0.45]	chr11	492701	30	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.47684	4.549785	4.62273	0.103601	0.0389508	0.197541	0.142578
chr11	124652670	124652769	5138877	0	-	0.444444	(0.419,0.45]	chr11	499413	25	INTRON	INTRON	SIAE	ENSG00000110013.13	ENST00000263593.8:ENST00000545756.5:ENST00000618733.4	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.47684	4.549785	4.62273	0.103601	0.0389508	0.197541	0.142578
chr12	26712745	26712843	5400386	0	-	0.44898	(0.419,0.45]	chr12	528698	11	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000540791.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.47684	4.549785	4.62273	0.103601	0.0389508	0.197541	0.142578
chr13	32073541	32073641	5561366	0	+	0.45	(0.419,0.45]	chr13	548552	120	INTRON	INTRON	FRY	ENSG00000073910.23	ENST00000645780.1:ENST00000647500.1:ENST00000642040.1:ENST00000542859.6:ENST00000436046.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.47684	4.549785	4.62273	0.103601	0.0389508	0.197541	0.142578
chr15	98786700	98786800	6194713	0	+	0.45	(0.419,0.45]	chr15	609667	18	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1:ENST00000557938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.47684	4.549785	4.62273	0.103601	0.0389508	0.197541	0.142578
chr2	235527838	235527938	1062876	0	+	0.42	(0.419,0.45]	chr2	115656	29	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.47684	4.549785	4.62273	0.103601	0.0389508	0.197541	0.142578
chr20	34932729	34932825	7550078	0	-	0.427083	(0.419,0.45]	chr20	788160	2	INTRON	INTRON	GSS	ENSG00000100983.12	ENST00000651619.1:ENST00000646735.1:ENST00000646405.1:ENST00000642498.1:ENST00000643908.1:ENST00000645723.1:ENST00000643188.1:ENST00000644793.1:ENST00000646512.1:ENST00000645328.1:ENST00000643502.1:ENST00000644538.1:ENST00000643443.1:ENST00000451957.2:ENST00000642538.1:ENST00000645408.1:ENST00000646497.1:ENST00000642493.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.47684	4.549785	4.62273	0.103601	0.0389508	0.197541	0.142578
chrX	32902113	32902213	8020512	0	-	0.42	(0.419,0.45]	chrX	837295	519	INTRON	INTRON	DMD	ENSG00000198947.18	ENST00000357033.9:ENST00000378677.6:ENST00000488902.5:ENST00000420596.5:ENST00000448370.5:ENST00000682899.1:ENST00000683985.1:ENST00000288447.9:ENST00000684165.1:ENST00000682924.1:ENST00000682071.1:ENST00000684292.1:ENST00000684237.1:ENST00000682870.1:ENST00000684660.1:ENST00000683309.1:ENST00000684056.1:ENST00000683658.1:ENST00000682437.1:ENST00000682584.1:ENST00000684357.1:ENST00000472681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.47684	4.549785	4.62273	0.103601	0.0389508	0.197541	0.142578
chr8	140552726	140552825	4088784	0	-	0.555556	(0.523,0.58]	chr8	388568	9	INTRON	INTRON	AGO2	ENSG00000123908.12	ENST00000220592.10:ENST00000519980.5:ENST00000523609.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	94	2	3.22074	4.54932	5.8779	0.0350559	0.00121652	0.12704	0.0162693
chr19	6679281	6679308	7322511	0	-	0.666667	(0.58,1]	chr19	756376	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000599899.5:ENST00000695690.1:ENST00000695691.1:ENST00000695689.1:ENST00000695653.1:ENST00000695654.1:ENST00000599668.1:ENST00000601008.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	132	2	2.92832	4.548885	6.16945	0.00387582	0.00366503	0.0401256	0.0346803
chr16	8842292	8842379	6382817	0	+	0.367816	(0.36,0.39]	chr16	631334	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000683435.1:ENST00000683094.1:ENST00000566604.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000567697.2:ENST00000562025.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	36	2	4.39677	4.548045	4.69932	0.0877431	0.0422707	0.183437	0.149195
chr16	29263016	29263116	6433467	0	+	0.39	(0.36,0.39]	chr16	636745	109	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	4.39677	4.548045	4.69932	0.0877431	0.0422707	0.183437	0.149195
chr21	43414678	43414776	7676213	0	-	0.377551	(0.36,0.39]	chr21	802488	3	UTR3	UTR3:EXON_MRNA	SIK1	ENSG00000142178.9	ENST00000270162.8	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.39677	4.548045	4.69932	0.0877431	0.0422707	0.183437	0.149195
chr6	109085502	109085602	3228575	0	-	0.39	(0.36,0.39]	chr6	312864	260	INTRON	INTRON	SESN1	ENSG00000080546.14	ENST00000436639.7	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.39677	4.548045	4.69932	0.0877431	0.0422707	0.183437	0.149195
chr4	3367285	3367385	2005109	0	+	0.65	(0.58,1]	chr4	204663	239	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	85	2	3.06331	4.54801	6.03271	0.036259	4.18183e-4	0.127941	0.00770005
chr17	15466759	15466859	6860102	0	-	0.48	(0.45,0.485]	chr17	695067	133	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	128	2	3.00405	4.547675	6.0913	0.00998516	0.00607897	0.0673647	0.0488044
chr3	194475719	194475819	1979630	0	-	0.41	(0.39,0.419]	chr3	201444	76	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	84	2	3.09555	4.54759	5.99963	0.0231436	0.0142473	0.109883	0.0817691
chr18	58205458	58205558	7073073	0	+	0.53	(0.523,0.58]	chr18	721147	72	INTRON	INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000676223.1:ENST00000675147.1:ENST00000591989.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5:ENST00000588516.5:ENST00000456986.5:ENST00000675502.1:ENST00000675137.1:ENST00000357895.9:ENST00000435432.6:ENST00000586263.5:ENST00000456173.6:ENST00000676251.1:ENST00000676226.1:ENST00000675865.1:ENST00000588494.5:ENST00000675221.1:ENST00000588066.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	98	2	3.51606	4.54743	5.5788	0.0216194	0.00262418	0.100615	0.0278348
chr1	19195845	19195944	409999	0	-	0.373737	(0.36,0.39]	chr1	47866	19	INTRON	INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8	protein_coding	protein_coding	protein_coding	protein_coding	1	81	2	3.45756	4.54738	5.6372	0.024533	0.0106804	0.106796	0.0700154
chr17	77296496	77296596	6803315	0	+	0.47	(0.45,0.485]	chr17	686716	12	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	82	2	3.08169	4.547375000000001	6.01306	0.0220375	0.0113949	0.10754	0.0723462
chr1	156085180	156085280	250730	0	+	0.57	(0.523,0.58]	chr1	29429	16	INTRON	INTRON	LMNA	ENSG00000160789.24	ENST00000502751.5:ENST00000368301.6:ENST00000470835.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	230	2	4.1892	4.547314999999999	4.90543	0.00163982	0.00138633	0.0250898	0.0179017
chr7	47475607	47475707	3588564	0	-	0.52	(0.485,0.523]	chr7	346123	225	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	2	204	2	4.12658	4.54723	4.96788	0.00731354	1.5023e-4	0.0568523	0.0036849
chr7	100580674	100580773	3654723	0	-	0.393939	(0.39,0.419]	chr7	352212	20	EXON_MRNA	EXON_MRNA:INTRON	LRCH4	ENSG00000077454.17	ENST00000310300.11:ENST00000467201.5:ENST00000497245.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.39622	4.5471	4.69798	0.088901	0.042449	0.183874	0.149195
chr2	165892279	165892378	1300575	0	-	0.30303	(0.29,0.33]	chr2	139463	14	UTR3	UTR3:EXON_MRNA:INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681167.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000680925.1:ENST00000679840.1:ENST00000680448.1:ENST00000681606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	93	2	2.9213	4.5468	6.1723	0.0537281	6.13404e-4	0.150759	0.0100959
chr20	33022389	33022479	7457525	0	+	0.511111	(0.485,0.523]	chr20	776431	2	INTRON	INTRON	BPIFB2	ENSG00000078898.7	ENST00000170150.4	protein_coding	protein_coding	protein_coding	protein_coding	3	131	2	2.38174	4.54667	6.7116	0.0253525	0.00281636	0.115383	0.0336649
chr2	134451136	134451236	898759	0	+	0.5	(0.485,0.523]	chr2	101298	24	UTR3	UTR3:EXON_MRNA	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	5	161	2	2.75935	4.54662	6.33389	0.00599835	0.00567224	0.0496143	0.0482679
chr20	62922851	62922951	7585563	0	-	0.4	(0.39,0.419]	chr20	792927	81	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8	protein_coding	protein_coding	protein_coding	protein_coding	3	139	2	2.30732	4.5465	6.78568	0.0330748	0.00378521	0.13294	0.0396337
chr22	28919280	28919380	7705634	0	+	0.38	(0.36,0.39]	chr22	806321	14	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7:ENST00000402174.5	protein_coding	protein_coding	protein_coding	protein_coding	1	81	2	3.42171	4.546495	5.67128	0.023302	0.0115651	0.103669	0.0732257
chr1	823109	823209	379741	0	-	0.54	(0.523,0.58]	chr1	42663	446	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000634337.2:ENST00000635509.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	37	2	4.13061	4.54629	4.96197	0.0533354	0.0521137	0.167062	0.148503
chr16	85521280	85521380	6518284	0	+	0.54	(0.523,0.58]	chr16	646391	1620	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.13061	4.54629	4.96197	0.0533354	0.0521137	0.167062	0.148503
chr6	31746041	31746141	2893886	0	+	0.58	(0.523,0.58]	chr6	282769	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MSH5	ENSG00000204410.16	ENST00000375755.8:ENST00000375750.9:ENST00000482280.1:ENST00000650702.1:ENST00000375703.7:ENST00000375740.7:ENST00000423982.6:ENST00000463144.5:ENST00000450148.5:ENST00000497269.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	37	2	4.13061	4.54629	4.96197	0.0533354	0.0521137	0.167062	0.148503
chr7	222147	222247	3305876	0	+	0.55	(0.523,0.58]	chr7	320161	128	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	2	103	2	3.12569	4.546215	5.96674	0.0109075	0.00713962	0.0707085	0.0541241
chr9	93541222	93541322	4183397	0	+	0.58	(0.523,0.58]	chr9	397655	85	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000427765.1	protein_coding	protein_coding	protein_coding	protein_coding	1	94	2	2.88392	4.54616	6.2084	0.0586821	4.95211e-4	0.155604	0.00865935
chr16	78507947	78508047	6499491	0	+	0.48	(0.45,0.485]	chr16	645683	748	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000684632.1:ENST00000627394.3:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6:ENST00000408984.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	96	2	2.87419	4.546145	6.2181	0.061784	5.99406e-4	0.158872	0.00993857
chr16	85401731	85401831	6517088	0	+	0.59	(0.58,1]	chr16	646391	424	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	92	2	3.73069	4.5461100000000005	5.36153	0.0106925	0.00273899	0.0701355	0.028553
chr1	3472768	3472845	5839	0	+	0.688312	(0.58,1]	chr1	1238	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5:ENST00000464620.1:ENST00000418137.1:ENST00000485984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.3962	4.54565	4.6951	0.0521567	0.0250928	0.148503	0.114418
chr1	183472990	183473090	301135	0	+	0.62	(0.58,1]	chr1	34235	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.3962	4.54565	4.6951	0.0521567	0.0250928	0.148503	0.114418
chr1	228155853	228155952	358145	0	+	0.626263	(0.58,1]	chr1	40434	55	INTRON	INTRON	GJC2	ENSG00000198835.4	ENST00000366714.3	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.3962	4.54565	4.6951	0.0521567	0.0250928	0.148503	0.114418
chr11	70814466	70814566	5062428	0	-	0.65	(0.58,1]	chr11	492713	69	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.3962	4.54565	4.6951	0.0521567	0.0250928	0.148503	0.114418
chr12	132529782	132529881	5352913	0	+	0.616162	(0.58,1]	chr12	523670	14	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.3962	4.54565	4.6951	0.0521567	0.0250928	0.148503	0.114418
chr15	73709347	73709447	6150737	0	+	0.64	(0.58,1]	chr15	604961	3	SS3_PROX	SS3_PROX:INTRON	CD276	ENSG00000103855.18	ENST00000537340.6:ENST00000318424.9:ENST00000318443.10:ENST00000561213.5:ENST00000560928.5:ENST00000564751.5:ENST00000561176.5:ENST00000559073.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.3962	4.54565	4.6951	0.0521567	0.0250928	0.148503	0.114418
chr15	101459416	101459516	6364153	0	-	0.67	(0.58,1]	chr15	627290	8	INTRON	INTRON	PCSK6	ENSG00000140479.18	ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000611967.4:ENST00000615296.4:ENST00000559417.2:ENST00000331826.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.3962	4.54565	4.6951	0.0521567	0.0250928	0.148503	0.114418
chr17	29117830	29117930	6876327	0	-	0.59	(0.58,1]	chr17	697939	4	SS5_PROX	SS5_PROX:INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000588791.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.3962	4.54565	4.6951	0.0521567	0.0250928	0.148503	0.114418
chr17	81087408	81087491	6813906	0	+	0.662651	(0.58,1]	chr17	688145	5	INTRON	INTRON	BAIAP2	ENSG00000175866.16	ENST00000321280.11:ENST00000428708.7:ENST00000572329.5:ENST00000575712.5:ENST00000575245.5:ENST00000321300.10:ENST00000435091.7:ENST00000572918.5:ENST00000573017.5:ENST00000575958.5:ENST00000573659.5:ENST00000572073.5:ENST00000573677.5:ENST00000574804.5:ENST00000576364.6:ENST00000577097.5:ENST00000576225.5:ENST00000575841.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.3962	4.54565	4.6951	0.0521567	0.0250928	0.148503	0.114418
chr17	81140997	81141096	6982912	0	-	0.727273	(0.58,1]	chr17	713268	61	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.3962	4.54565	4.6951	0.0521567	0.0250928	0.148503	0.114418
chr19	47673054	47673154	7278347	0	+	0.6	(0.58,1]	chr19	747629	651	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.3962	4.54565	4.6951	0.0521567	0.0250928	0.148503	0.114418
chr22	48754829	48754929	7751818	0	+	0.67	(0.58,1]	chr22	812294	30	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000336769.9	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.3962	4.54565	4.6951	0.0521567	0.0250928	0.148503	0.114418
chr8	144741582	144741682	4101099	0	-	0.31	(0.29,0.33]	chr8	390597	178	INTRON	INTRON	ZNF251	ENSG00000198169.9	ENST00000524394.2:ENST00000292562.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.12201	4.545575	4.96914	0.0564091	0.0481918	0.171933	0.144601
chr7	47478004	47478104	3588588	0	-	0.55	(0.523,0.58]	chr7	346123	249	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	3	125	2	2.65346	4.545505	6.43755	0.0134205	0.00473049	0.0804825	0.0449253
chr10	75480805	75480905	4520966	0	+	0.49	(0.485,0.523]	chr10	432249	292	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	1	94	2	2.88614	4.54547	6.2048	0.0583792	5.23665e-4	0.155373	0.0090184
chr13	112691452	112691552	5652554	0	+	0.43	(0.419,0.45]	chr13	554894	6	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5	protein_coding	protein_coding	protein_coding	protein_coding	5	433	2	3.26658	4.545435	5.82429	0.012162	2.06306e-5	0.0750375	8.5848e-4
chr19	1415540	1415639	7187502	0	+	0.686869	(0.58,1]	chr19	731286	51	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	88	2	3.5406	4.54519	5.54978	0.0154024	0.00165911	0.0849828	0.0202545
chr1	759523	759623	379096	0	-	0.46	(0.45,0.485]	chr1	42622	4	SS3_PROX	SS3_PROX:INTRON	ENSG00000230021:ENSG00000228327	ENSG00000230021.10:ENSG00000228327.4	ENST00000634337.2:ENST00000635509.2:ENST00000506640.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene:transcribed_unprocessed_pseudogene	processed_transcript	0	35	2	4.49786	4.545055	4.59225	0.101311	0.0259502	0.196131	0.116361
chr10	114601026	114601126	4763810	0	-	0.47	(0.45,0.485]	chr10	455659	55	INTRON	INTRON	ABLIM1	ENSG00000099204.21	ENST00000533213.7:ENST00000392955.7:ENST00000369256.6:ENST00000649363.1:ENST00000651092.1:ENST00000651023.1:ENST00000477638.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.49786	4.545055	4.59225	0.101311	0.0259502	0.196131	0.116361
chr11	71071258	71071358	5065006	0	-	0.48	(0.45,0.485]	chr11	492754	143	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000618363.4:ENST00000458632.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.49786	4.545055	4.59225	0.101311	0.0259502	0.196131	0.116361
chr2	11534654	11534754	720210	0	+	0.48	(0.45,0.485]	chr2	84089	4	SS5_PROX	SS5_PROX:INTRON	GREB1	ENSG00000196208.14	ENST00000628795.2:ENST00000381486.7	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.49786	4.545055	4.59225	0.101311	0.0259502	0.196131	0.116361
chr20	38751930	38752030	7477132	0	+	0.47	(0.45,0.485]	chr20	778633	4	SS3_PROX	SS3_PROX:INTRON	ACTR5	ENSG00000101442.10	ENST00000243903.6	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.49786	4.545055	4.59225	0.101311	0.0259502	0.196131	0.116361
chr3	4180645	4180745	1674957	0	-	0.47	(0.45,0.485]	chr3	175311	1115	INTRON	INTRON	SUMF1	ENSG00000144455.14	ENST00000448413.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	35	2	4.49786	4.545055	4.59225	0.101311	0.0259502	0.196131	0.116361
chr5	148393515	148393615	2562864	0	+	0.46	(0.45,0.485]	chr5	254487	36	INTRON	INTRON	FBXO38	ENSG00000145868.17	ENST00000296701.10:ENST00000503613.5:ENST00000340253.10:ENST00000394370.7:ENST00000508326.5:ENST00000509411.5:ENST00000511080.5:ENST00000504971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.49786	4.545055	4.59225	0.101311	0.0259502	0.196131	0.116361
chr6	5444006	5444106	2834214	0	+	0.46	(0.45,0.485]	chr6	277876	123	INTRON	INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000648580.1:ENST00000274680.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.49786	4.545055	4.59225	0.101311	0.0259502	0.196131	0.116361
chrX	2385458	2385558	7967698	0	-	0.47	(0.45,0.485]	chrX	834355	471	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.49786	4.545055	4.59225	0.101311	0.0259502	0.196131	0.116361
chr16	81565076	81565176	6508944	0	+	0.53	(0.523,0.58]	chr16	645911	692	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	3	131	2	2.36236	4.545025	6.72769	0.0261999	0.00275419	0.117385	0.0332418
chr18	39452520	39452620	7148922	0	-	0.45	(0.419,0.45]	chr18	727068	166	INTRON	INTRON	MIR924HG	ENSG00000267374.3	ENST00000670992.1:ENST00000591629.2:ENST00000662708.1:ENST00000663592.1:ENST00000665749.1:ENST00000668737.1:ENST00000669590.1:ENST00000667816.1:ENST00000666361.1:ENST00000671441.1:ENST00000668052.1:ENST00000669399.1:ENST00000666611.1:ENST00000667009.1:ENST00000666148.1:ENST00000667500.1:ENST00000658829.1:ENST00000665844.1:ENST00000670388.1:ENST00000653594.1:ENST00000660099.1:ENST00000655721.1:ENST00000655349.1:ENST00000665416.1:ENST00000655720.1:ENST00000663128.1:ENST00000668391.1:ENST00000652839.1:ENST00000654975.1:ENST00000667895.1:ENST00000670943.1:ENST00000670383.1:ENST00000652860.1:ENST00000664919.1:ENST00000660405.1:ENST00000667722.1:ENST00000653742.1:ENST00000666181.1:ENST00000654966.1:ENST00000658177.1:ENST00000670121.1:ENST00000669520.1	lncRNA	lncRNA	lncRNA	lncRNA	1	82	2	3.46155	4.5448	5.62805	0.0280406	0.0110249	0.113651	0.0711736
chr1	149533601	149533689	238958	0	+	0.488636	(0.485,0.523]	chr1	26826	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF19	ENSG00000271383.8	ENST00000651566.2:ENST00000611931.4:ENST00000612881.4:ENST00000369227.7	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.12717	4.544779999999999	4.96239	0.0545434	0.0518747	0.167824	0.148503
chr19	15644836	15644932	7215402	0	+	0.520833	(0.485,0.523]	chr19	737139	4	INTRON	INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.12717	4.544779999999999	4.96239	0.0545434	0.0518747	0.167824	0.148503
chr2	32504024	32504120	749291	0	+	0.510417	(0.485,0.523]	chr2	87424	4	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1:ENST00000497023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.12717	4.544779999999999	4.96239	0.0545434	0.0518747	0.167824	0.148503
chr2	73267182	73267276	1190600	0	-	0.510638	(0.485,0.523]	chr2	129026	1	INTRON	INTRON	FBXO41	ENSG00000163013.12	ENST00000295133.9:ENST00000520530.3:ENST00000521871.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.12717	4.544779999999999	4.96239	0.0545434	0.0518747	0.167824	0.148503
chr3	38472945	38473045	1446455	0	+	0.49	(0.485,0.523]	chr3	154292	182	INTRON	INTRON	ACVR2B	ENSG00000114739.14	ENST00000352511.5:ENST00000465020.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.12717	4.544779999999999	4.96239	0.0545434	0.0518747	0.167824	0.148503
chr7	75712468	75712568	3608228	0	-	0.5	(0.485,0.523]	chr7	348444	574	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6:ENST00000485723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.12717	4.544779999999999	4.96239	0.0545434	0.0518747	0.167824	0.148503
chr3	149539715	149539815	1940011	0	-	0.39	(0.36,0.39]	chr3	197467	1	SS5_PROX	SS5_PROX:INTRON	WWTR1	ENSG00000018408.15	ENST00000465804.5:ENST00000360632.8:ENST00000467467.5:ENST00000471586.5:ENST00000494754.1:ENST00000472417.1:ENST00000485244.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	116	2	2.53819	4.544715	6.55124	0.0310559	0.0055566	0.127822	0.049265
chr19	943715	943815	7185283	0	+	0.59	(0.58,1]	chr19	730741	106	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	96	2	2.97017	4.54441	6.11865	0.00858469	0.00429384	0.0612699	0.042386
chr13	113214963	113215062	5657357	0	+	0.535354	(0.523,0.58]	chr13	555523	45	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000488558.2:ENST00000375440.9:ENST00000474116.5:ENST00000494985.5:ENST00000463426.5:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	203	2	4.23665	4.54435	4.85205	0.0059863	2.0559e-4	0.0508545	0.00461335
chr2	73852324	73852424	833275	0	+	0.39	(0.36,0.39]	chr2	94124	2	SS3_PROX	SS3_PROX:INTRON	STAMBP	ENSG00000124356.17	ENST00000339566.7:ENST00000684095.1:ENST00000682847.1:ENST00000683317.1:ENST00000683036.1:ENST00000682157.1:ENST00000683349.1:ENST00000684337.1:ENST00000683247.1:ENST00000682683.1:ENST00000682329.1:ENST00000683149.1:ENST00000682851.1:ENST00000394070.7:ENST00000683728.1:ENST00000409707.6:ENST00000683518.1:ENST00000684585.1:ENST00000683434.1:ENST00000682352.1:ENST00000684697.1:ENST00000682592.1:ENST00000683718.1:ENST00000682423.1:ENST00000478946.2:ENST00000684200.1:ENST00000684355.1:ENST00000684774.1:ENST00000536064.2:ENST00000683465.1:ENST00000684716.1:ENST00000683016.1:ENST00000684174.1:ENST00000684703.1:ENST00000682799.1:ENST00000682998.1:ENST00000682379.1:ENST00000684312.1:ENST00000683852.1:ENST00000684321.1:ENST00000394073.6:ENST00000684671.1:ENST00000682848.1:ENST00000683877.1:ENST00000683530.1:ENST00000683027.1:ENST00000683304.1:ENST00000682784.1:ENST00000683205.1:ENST00000682351.1:ENST00000683818.1:ENST00000684426.1:ENST00000683582.1:ENST00000683417.1:ENST00000683594.1:ENST00000682387.1:ENST00000682747.1:ENST00000682105.1:ENST00000683928.1:ENST00000683391.1:ENST00000684758.1:ENST00000682558.1:ENST00000683902.1:ENST00000432295.7:ENST00000486458.2:ENST00000683314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	82	2	3.22776	4.54407	5.86038	0.0175762	0.0174081	0.0933129	0.0901374
chr10	35448276	35448376	4476795	0	+	0.54	(0.523,0.58]	chr10	428120	137	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.43597	4.54377	4.65157	0.0787008	0.0313935	0.175203	0.127822
chr13	50747570	50747670	5600112	0	+	0.56	(0.523,0.58]	chr13	551734	212	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000652753.1:ENST00000650996.1	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	4.43597	4.54377	4.65157	0.0787008	0.0313935	0.175203	0.127822
chr16	75063661	75063761	6492556	0	+	0.53	(0.523,0.58]	chr16	645343	164	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.43597	4.54377	4.65157	0.0787008	0.0313935	0.175203	0.127822
chr18	13446608	13446706	7025042	0	+	0.561224	(0.523,0.58]	chr18	717583	24	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000610087.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.43597	4.54377	4.65157	0.0787008	0.0313935	0.175203	0.127822
chr19	57395971	57396067	7296615	0	+	0.5625	(0.523,0.58]	chr19	751442	14	INTRON	INTRON	ZNF548:ENSG00000268533	ENSG00000188785.12:ENSG00000268533.1	ENST00000366197.9:ENST00000336128.12:ENST00000597400.5:ENST00000596282.5:ENST00000598895.5:ENST00000602086.5:ENST00000597047.1:ENST00000600442.5:ENST00000594693.5:ENST00000594668.5:ENST00000600927.1:ENST00000597410.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.43597	4.54377	4.65157	0.0787008	0.0313935	0.175203	0.127822
chr2	237671710	237671810	1070280	0	+	0.54	(0.523,0.58]	chr2	115969	436	INTRON	INTRON	LRRFIP1	ENSG00000124831.19	ENST00000308482.14:ENST00000465870.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.43597	4.54377	4.65157	0.0787008	0.0313935	0.175203	0.127822
chr5	80426394	80426493	2465378	0	+	0.575758	(0.523,0.58]	chr5	246260	143	INTRON	INTRON	ZFYVE16	ENSG00000039319.17	ENST00000338008.9:ENST00000510158.5:ENST00000512558.5:ENST00000505560.5:ENST00000509562.2:ENST00000510995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.43597	4.54377	4.65157	0.0787008	0.0313935	0.175203	0.127822
chr9	37971326	37971426	4302799	0	-	0.53	(0.523,0.58]	chr9	411604	149	INTRON	INTRON	SHB	ENSG00000107338.10	ENST00000377707.4	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.43597	4.54377	4.65157	0.0787008	0.0313935	0.175203	0.127822
chr7	47347453	47347552	3587265	0	-	0.606061	(0.58,1]	chr7	346030	7	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.25332	4.543535	5.83375	0.0120565	0.00751249	0.0754623	0.0576451
chr2	235624614	235624714	1063844	0	+	0.5	(0.485,0.523]	chr2	115656	997	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	77	2	3.4289	4.543405	5.65791	0.0181582	0.00977282	0.0921579	0.0664239
chr7	217857	217956	3305833	0	+	0.515152	(0.485,0.523]	chr7	320161	85	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	3.4289	4.543405	5.65791	0.0181582	0.00977282	0.0921579	0.0664239
chr1	155686681	155686780	598049	0	-	0.40404	(0.39,0.419]	chr1	70179	59	INTRON	INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000355499.9:ENST00000405763.7:ENST00000476093.5:ENST00000443231.5:ENST00000476027.5:ENST00000454523.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.09132	4.54335	4.99538	0.0689553	0.0613573	0.193274	0.158506
chr10	18556268	18556368	4642291	0	-	0.4	(0.39,0.419]	chr10	443321	39	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.09132	4.54335	4.99538	0.0689553	0.0613573	0.193274	0.158506
chr11	68489572	68489672	4883769	0	+	0.41	(0.39,0.419]	chr11	470696	284	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	38	2	4.09132	4.54335	4.99538	0.0689553	0.0613573	0.193274	0.158506
chr12	89348868	89348964	5468474	0	-	0.416667	(0.39,0.419]	chr12	537628	18	UTR3	UTR3:EXON_MRNA	DUSP6	ENSG00000139318.8	ENST00000279488.8:ENST00000308385.6	protein_coding	protein_coding	protein_coding	protein_coding	0	38	2	4.09132	4.54335	4.99538	0.0689553	0.0613573	0.193274	0.158506
chr1	29280541	29280641	78826	0	+	0.64	(0.58,1]	chr1	8964	4	SS5_PROX	SS5_PROX:INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2:ENST00000415600.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	72	2	3.35051	4.543265	5.73602	0.00953058	0.00904546	0.0650078	0.0637469
chr2	3458193	3458252	711013	0	+	0.627119	(0.58,1]	chr2	83172	1	INTRON	INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000479955.5:ENST00000497597.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	71	2	3.60807	4.54323	5.47839	0.0145198	0.00495688	0.0823104	0.0425347
chr4	870410	870510	2178297	0	-	0.64	(0.58,1]	chr4	220582	3	SS5_PROX	SS5_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	71	2	3.56821	4.54317	5.51813	0.013519	0.00550024	0.0792526	0.0454065
chr17	62001319	62001418	6943087	0	-	0.40404	(0.39,0.419]	chr17	708003	56	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	1	82	2	3.71423	4.542975	5.37172	0.0367885	0.00594315	0.129052	0.0479866
chr3	168052260	168052359	1953051	0	-	0.353535	(0.33,0.36]	chr3	198615	35	INTRON	INTRON	GOLIM4	ENSG00000173905.9	ENST00000470487.6:ENST00000309027.4	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.31234	4.542945	4.77355	0.0735809	0.0458858	0.17026	0.154743
chr9	94924575	94924675	4189229	0	+	0.36	(0.33,0.36]	chr9	398082	4	SS5_PROX	SS5_PROX:INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000277198.6:ENST00000297979.9:ENST00000424143.5:ENST00000488186.5:ENST00000473778.5:ENST00000462125.5:ENST00000479161.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.31234	4.542945	4.77355	0.0735809	0.0458858	0.17026	0.154743
chr7	40089611	40089709	3353748	0	+	0.306122	(0.29,0.33]	chr7	324272	9	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000646039.1:ENST00000643859.1:ENST00000643915.1:ENST00000478563.2:ENST00000644221.1:ENST00000644561.1:ENST00000645826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	83	2	2.95342	4.542755	6.13209	0.0280419	0.00731667	0.121542	0.0568523
chr14	70019534	70019633	5872577	0	+	0.575758	(0.523,0.58]	chr14	573357	57	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.23973	4.54271	4.84569	0.0610722	0.0444247	0.158506	0.153511
chr17	77463103	77463203	6805009	0	+	0.54	(0.523,0.58]	chr17	686806	62	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.23973	4.54271	4.84569	0.0610722	0.0444247	0.158506	0.153511
chr2	239338790	239338890	1392098	0	-	0.58	(0.523,0.58]	chr2	148752	143	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.23973	4.54271	4.84569	0.0610722	0.0444247	0.158506	0.153511
chr6	140780233	140780333	3279533	0	-	0.55	(0.523,0.58]	chr6	317145	1164	INTRON	INTRON	ENSG00000234147	ENSG00000234147.3	ENST00000650553.2	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	4.23973	4.54271	4.84569	0.0610722	0.0444247	0.158506	0.153511
chr7	202439	202539	3305678	0	+	0.56	(0.523,0.58]	chr7	320155	50	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6:ENST00000477004.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.23973	4.54271	4.84569	0.0610722	0.0444247	0.158506	0.153511
chr7	100579978	100580077	3654716	0	-	0.525253	(0.523,0.58]	chr7	352212	13	EXON_MRNA	EXON_MRNA:INTRON	LRCH4	ENSG00000077454.17	ENST00000310300.11:ENST00000467201.5:ENST00000497245.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	36	2	4.23973	4.54271	4.84569	0.0610722	0.0444247	0.158506	0.153511
chr7	133787265	133787364	3490516	0	+	0.525253	(0.523,0.58]	chr7	336709	159	INTRON	INTRON	EXOC4	ENSG00000131558.15	ENST00000253861.5:ENST00000479839.6:ENST00000483800.5:ENST00000469115.5:ENST00000489931.5:ENST00000482089.5:ENST00000460346.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.23973	4.54271	4.84569	0.0610722	0.0444247	0.158506	0.153511
chr1	8701555	8701655	394570	0	-	0.41	(0.39,0.419]	chr1	45065	448	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000468247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	83	2	3.14029	4.542655	5.94502	0.0211243	0.0155393	0.103778	0.0849828
chr9	7040374	7040474	4117799	0	+	0.38	(0.36,0.39]	chr9	391962	241	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000381306.7:ENST00000381309.8:ENST00000543771.5:ENST00000428870.6:ENST00000420847.2	protein_coding	protein_coding	protein_coding	protein_coding	1	107	2	3.63198	4.542505	5.45303	0.0208059	0.00525731	0.0990286	0.044445
chr11	70773960	70774060	5062021	0	-	0.43	(0.419,0.45]	chr11	492701	561	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	85	2	3.06656	4.5424500000000005	6.01834	0.0252325	0.015582500000000001	0.114921	0.0849828
chr9	134342628	134342728	4260849	0	+	0.71	(0.58,1]	chr9	406311	156	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	93	2	3.77454	4.5424500000000005	5.31036	0.00981158	0.00312721	0.0668871	0.0311915
chr1	8727974	8728074	394835	0	-	0.52	(0.485,0.523]	chr1	45069	249	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.43249	4.542235	4.65198	0.0783889	0.0322299	0.175203	0.12988
chr12	111691268	111691368	5329185	0	+	0.49	(0.485,0.523]	chr12	519719	1	SS5_PROX	SS5_PROX:INTRON	ACAD10	ENSG00000111271.15	ENST00000313698.9:ENST00000511915.1:ENST00000514615.5:ENST00000413681.7:ENST00000509936.5:ENST00000549590.5:ENST00000455480.6:ENST00000552965.1:ENST00000507135.5:ENST00000515283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.43249	4.542235	4.65198	0.0783889	0.0322299	0.175203	0.12988
chr4	3413676	3413774	2005582	0	+	0.510204	(0.485,0.523]	chr4	204691	8	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000513784.7:ENST00000338806.4:ENST00000506998.5:ENST00000508158.5:ENST00000505570.5:ENST00000512990.5:ENST00000503041.5:ENST00000504194.5:ENST00000643191.1:ENST00000512266.5:ENST00000513991.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.43249	4.542235	4.65198	0.0783889	0.0322299	0.175203	0.12988
chr5	108141238	108141338	2737397	0	-	0.51	(0.485,0.523]	chr5	268851	1199	INTRON	INTRON	FBXL17	ENSG00000145743.18	ENST00000542267.7:ENST00000496714.2:ENST00000481160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.43249	4.542235	4.65198	0.0783889	0.0322299	0.175203	0.12988
chr5	176592422	176592522	2596990	0	+	0.49	(0.485,0.523]	chr5	257778	3	SS3_PROX	SS3_PROX:INTRON	CDHR2	ENSG00000074276.11	ENST00000510636.5:ENST00000261944.10:ENST00000506348.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.43249	4.542235	4.65198	0.0783889	0.0322299	0.175203	0.12988
chr7	98242590	98242684	3647994	0	-	0.489362	(0.485,0.523]	chr7	351148	10	INTRON	INTRON	TECPR1	ENSG00000205356.10	ENST00000447648.7:ENST00000471397.1:ENST00000463648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.43249	4.542235	4.65198	0.0783889	0.0322299	0.175203	0.12988
chr2	216167443	216167543	1023892	0	+	0.4	(0.39,0.419]	chr2	111645	50	INTRON	INTRON	XRCC5	ENSG00000079246.16	ENST00000392133.7:ENST00000392132.7:ENST00000460284.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	109	2	3.11175	4.542165	5.97258	0.0148746	0.00887797	0.0833515	0.0618231
chr3	179747109	179747208	1637962	0	+	0.444444	(0.419,0.45]	chr3	171472	15	INTRON	INTRON	ENSG00000288698:USP13	ENSG00000288698.1:ENSG00000058056.10	ENST00000680408.1:ENST00000680587.1:ENST00000263966.8:ENST00000482333.5:ENST00000680008.1:ENST00000496897.5:ENST00000679972.1:ENST00000497155.1:ENST00000680853.1:ENST00000680951.1:ENST00000681560.1:ENST00000679893.1:ENST00000679768.1:ENST00000680167.1:ENST00000679954.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	156	2	3.28983	4.54208	5.79433	0.0197513	0.00262626	0.0959403	0.0278348
chr7	47361292	47361392	3587404	0	-	0.62	(0.58,1]	chr7	346030	146	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	3.52722	4.542014999999999	5.55681	0.0126042	0.00611467	0.0761905	0.0489549
chr3	42647157	42647256	1452463	0	+	0.444444	(0.419,0.45]	chr3	155084	13	UTR3	UTR3:EXON_MRNA	NKTR	ENSG00000114857.19	ENST00000429888.5:ENST00000232978.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	490	2	3.3641	4.541965	5.71983	0.00897686	2.8125e-5	0.0637469	0.00107401
chr14	81207085	81207185	6020993	0	-	0.4	(0.39,0.419]	chr14	590998	26	INTRON	INTRON	GTF2A1	ENSG00000165417.12	ENST00000553612.6:ENST00000298173.7:ENST00000434192.2:ENST00000556268.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	37	2	4.20027	4.541964999999999	4.88366	0.0707789	0.0583327	0.175217	0.168159
chr18	32019926	32020026	7039234	0	+	0.41	(0.39,0.419]	chr18	718939	5	INTRON	INTRON	RNF125	ENSG00000101695.9	ENST00000217740.4	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.20027	4.541964999999999	4.88366	0.0707789	0.0583327	0.175217	0.168159
chr3	105852614	105852713	1862812	0	-	0.464646	(0.45,0.485]	chr3	189853	128	INTRON	INTRON	CBLB	ENSG00000114423.23	ENST00000645759.1:ENST00000394030.8:ENST00000646499.1:ENST00000645425.1:ENST00000646825.1:ENST00000643322.1:ENST00000403724.5:ENST00000405772.5:ENST00000447441.6:ENST00000643403.1:ENST00000438603.6:ENST00000443752.2:ENST00000643192.1:ENST00000642907.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	96	2	3.25658	4.54174	5.8269	0.0347918	0.00167585	0.126561	0.0203806
chr1	234474302	234474401	688618	0	-	0.282828	[0,0.29]	chr1	81056	11	INTRON	INTRON	TARBP1	ENSG00000059588.10	ENST00000040877.2	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.54061	4.5416799999999995	4.54275	0.0681032	0.0235212	0.164448	0.110758
chr2	235523623	235523723	1062832	0	+	0.64	(0.58,1]	chr2	115651	284	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	98	2	3.93773	4.5413499999999996	5.14497	0.00708574	0.00474658	0.0558168	0.0413976
chr1	33034416	33034515	440118	0	-	0.424242	(0.419,0.45]	chr1	52532	27	UTR3	UTR3:EXON_MRNA:INTRON	AK2	ENSG00000004455.18	ENST00000373449.7:ENST00000672715.1:ENST00000550338.6:ENST00000695599.1:ENST00000354858.11:ENST00000695600.1:ENST00000695601.1:ENST00000491241.2:ENST00000695602.1:ENST00000469238.2:ENST00000695603.1:ENST00000695604.1:ENST00000672308.1:ENST00000548033.5:ENST00000467905.5:ENST00000480134.5:ENST00000695605.1:ENST00000673291.1:ENST00000487289.1:ENST00000548559.1:ENST00000551979.1:ENST00000695606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	82	2	3.56166	4.541195	5.52073	0.0327198	0.00882182	0.122543	0.061625
chr11	68338062	68338161	4882338	0	+	0.50505	(0.485,0.523]	chr11	470542	249	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.23628	4.541195	4.84611	0.0608067	0.045492200000000003	0.158506	0.154539
chr13	113541493	113541592	5658697	0	+	0.50505	(0.485,0.523]	chr13	555728	16	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.23628	4.541195	4.84611	0.0608067	0.045492200000000003	0.158506	0.154539
chr14	94307686	94307782	6046249	0	-	0.447917	(0.419,0.45]	chr14	593049	11	INTRON	INTRON	SERPINA6	ENSG00000170099.6	ENST00000341584.4:ENST00000555056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	82	2	3.56166	4.541195	5.52073	0.0327198	0.00882182	0.122543	0.061625
chr20	32144590	32144690	7454527	0	+	0.51	(0.485,0.523]	chr20	775942	1	SS3_PROX	SS3_PROX:INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000217315.9	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.23628	4.541195	4.84611	0.0608067	0.045492200000000003	0.158506	0.154539
chr7	213467	213566	3305789	0	+	0.494949	(0.485,0.523]	chr7	320161	41	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.23628	4.541195	4.84611	0.0608067	0.045492200000000003	0.158506	0.154539
chr7	143881922	143882010	3729979	0	-	0.511364	(0.485,0.523]	chr7	358296	1	UTR5	UTR5:EXON_MRNA:INTRON	TCAF1	ENSG00000198420.10	ENST00000479870.6:ENST00000355951.2:ENST00000392900.3:ENST00000460532.5:ENST00000491908.1:ENST00000478172.1:ENST00000485416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.23628	4.541195	4.84611	0.0608067	0.045492200000000003	0.158506	0.154539
chr16	81681417	81681517	6510125	0	+	0.59	(0.58,1]	chr16	645979	24	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	3.48889	4.541065	5.59324	0.016972	0.0014734	0.0889149	0.0185589
chr9	124490980	124491080	4402632	0	-	0.66	(0.58,1]	chr9	419807	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	3.48889	4.541065	5.59324	0.016972	0.0014734	0.0889149	0.0185589
chr2	152153825	152153925	1284010	0	-	0.39	(0.36,0.39]	chr2	138161	32	INTRON	INTRON	STAM2	ENSG00000115145.10	ENST00000263904.5:ENST00000482997.5:ENST00000463854.5:ENST00000494589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	98	2	3.05499	4.54098	6.02697	0.0505441	0.00133548	0.148456	0.0173572
chr16	89296976	89297075	6659775	0	-	0.636364	(0.58,1]	chr16	666648	48	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	115	2	3.12738	4.54096	5.95454	0.0059453	0.00308082	0.0506158	0.0310143
chr20	38070617	38070716	7475369	0	+	0.393939	(0.39,0.419]	chr20	778416	1	INTRON	INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	109	2	3.13652	4.54077	5.94502	0.0155393	0.00837658	0.0849828	0.0600586
chr5	1104102	1104201	2608892	0	-	0.656566	(0.58,1]	chr5	259667	95	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	3	115	2	2.70293	4.540575	6.37822	0.00981512	0.00252415	0.0664239	0.031696
chr16	32772289	32772388	6442270	0	+	0.464646	(0.45,0.485]	chr16	638922	8	INTRON	INTRON	HERC2P5	ENSG00000260644.6	ENST00000562687.6	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	transcribed_unprocessed_pseudogene	0	35	2	4.50852	4.540509999999999	4.5725	0.0926859	0.0302873	0.188571	0.126768
chr17	42579812	42579912	6904981	0	-	0.48	(0.45,0.485]	chr17	702399	4	UTR3	UTR3:EXON_MRNA	RETREG3	ENSG00000141699.11	ENST00000589797.5:ENST00000309428.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.50852	4.540509999999999	4.5725	0.0926859	0.0302873	0.188571	0.126768
chrX	47222380	47222480	7877828	0	+	0.47	(0.45,0.485]	chrX	825686	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CDK16	ENSG00000102225.17	ENST00000457458.6:ENST00000522883.1:ENST00000520295.5:ENST00000357227.9:ENST00000519758.5:ENST00000520893.5:ENST00000517426.5:ENST00000522234.5:ENST00000518391.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.50852	4.540509999999999	4.5725	0.0926859	0.0302873	0.188571	0.126768
chr3	12966986	12967086	1688799	0	-	0.6	(0.58,1]	chr3	176521	2	SS5_PROX	SS5_PROX:INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	260	2	3.83045	4.54039	5.25033	7.49029e-4	4.00699e-4	0.0116198	0.0114335
chr1	17590273	17590373	54082	0	+	0.54	(0.523,0.58]	chr1	5465	14	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5	protein_coding	protein_coding	protein_coding	protein_coding	2	108	2	2.64274	4.540145	6.43755	0.0221922	0.00473049	0.108193	0.0449253
chr19	2337857	2337935	7189504	0	+	0.628205	(0.58,1]	chr19	731792	4	EXON_MRNA	EXON_MRNA:SS3_PROX:SS5_PROX:INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1:ENST00000593243.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	71	2	3.68463	4.540045	5.39546	0.0168207	0.00404771	0.0884836	0.0371291
chr3	4023675	4023775	1673387	0	-	0.49	(0.485,0.523]	chr3	175305	1958	INTRON	INTRON	SUMF1	ENSG00000144455.14	ENST00000448413.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	85	2	2.85817	4.539935	6.2217	0.0334631	0.00693912	0.133139	0.0553898
chr17	17821819	17821919	6865739	0	-	0.63	(0.58,1]	chr17	695915	9	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	71	2	3.48503	4.53975	5.59447	0.0117666	0.006811	0.0737098	0.0524379
chr2	61184022	61184122	808964	0	+	0.35	(0.33,0.36]	chr2	91963	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	AHSA2P	ENSG00000173209.23	ENST00000357022.6:ENST00000394457.7:ENST00000489653.6:ENST00000642732.1:ENST00000643913.1:ENST00000647519.1:ENST00000642505.1:ENST00000471542.5:ENST00000493628.6:ENST00000487904.5:ENST00000484217.1	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript:transcribed_unitary_pseudogene	1	81	2	3.78113	4.5393349999999995	5.29754	0.0360263	0.00476732	0.127853	0.0414524
chr2	70033025	70033125	1178304	0	-	0.46	(0.45,0.485]	chr2	128194	10	EXON_LNCRNA	EXON_LNCRNA:INTRON	PCBP1-AS1	ENSG00000179818.16	ENST00000419542.5:ENST00000682294.1:ENST00000684630.1:ENST00000630975.3:ENST00000435880.6:ENST00000629339.3:ENST00000667874.1:ENST00000628659.2:ENST00000628308.2:ENST00000626515.2:ENST00000625447.2:ENST00000628305.2:ENST00000625625.2:ENST00000625864.2:ENST00000630522.2:ENST00000628837.2:ENST00000627325.2:ENST00000629084.2:ENST00000629603.2:ENST00000625215.2:ENST00000627189.2:ENST00000629836.2:ENST00000626898.2:ENST00000628883.2:ENST00000629533.2:ENST00000627181.2:ENST00000630214.2:ENST00000627918.2:ENST00000628374.2:ENST00000627327.2:ENST00000626495.2:ENST00000629605.2:ENST00000626370.2:ENST00000626842.2:ENST00000630457.2:ENST00000629184.2:ENST00000628551.2:ENST00000630746.2:ENST00000627398.2:ENST00000457076.5:ENST00000625783.2:ENST00000625490.2:ENST00000627050.2:ENST00000630759.2:ENST00000628667.2:ENST00000626632.2:ENST00000631110.2:ENST00000626609.2:ENST00000629506.2:ENST00000630985.2:ENST00000413436.5:ENST00000628147.2:ENST00000631107.2:ENST00000629415.2:ENST00000418564.5:ENST00000630280.2:ENST00000415222.5:ENST00000628322.2:ENST00000626440.2:ENST00000665708.1:ENST00000655086.1:ENST00000420309.6:ENST00000627487.3:ENST00000670036.1:ENST00000655096.1:ENST00000685127.1:ENST00000684907.1:ENST00000685079.1:ENST00000687866.1:ENST00000692564.1:ENST00000686517.1:ENST00000689138.1:ENST00000688056.1:ENST00000594376.6:ENST00000692333.1:ENST00000688045.1:ENST00000657291.1:ENST00000691987.1:ENST00000664483.1:ENST00000601431.6:ENST00000685803.1:ENST00000690200.1:ENST00000686800.1:ENST00000684857.1:ENST00000627037.2:ENST00000629212.2:ENST00000688473.1:ENST00000456161.5:ENST00000627074.2:ENST00000419963.5:ENST00000625227.2:ENST00000599673.5:ENST00000629407.2:ENST00000612430.3:ENST00000418308.5:ENST00000630283.2:ENST00000629178.2:ENST00000627542.2:ENST00000626574.2:ENST00000596028.5:ENST00000629485.2:ENST00000630685.2:ENST00000452431.5:ENST00000629374.2:ENST00000423402.5:ENST00000411429.5:ENST00000629188.2:ENST00000434781.5:ENST00000626162.2:ENST00000654878.1:ENST00000659586.1:ENST00000457770.6:ENST00000415742.5:ENST00000627540.2:ENST00000628263.2:ENST00000657575.2:ENST00000689275.1:ENST00000687961.1:ENST00000693279.1:ENST00000416395.6:ENST00000692733.1:ENST00000654336.1:ENST00000686055.1:ENST00000626509.3:ENST00000425601.6:ENST00000666075.1:ENST00000653064.1:ENST00000656326.1:ENST00000668711.1:ENST00000665172.1:ENST00000630520.3:ENST00000663209.1:ENST00000659305.1:ENST00000654601.1:ENST00000663375.1:ENST00000654958.1:ENST00000665838.1:ENST00000653606.1:ENST00000659941.1:ENST00000669583.1:ENST00000660903.1:ENST00000653596.1:ENST00000656308.1:ENST00000449178.6:ENST00000625955.3:ENST00000655140.1:ENST00000661989.1:ENST00000664419.1:ENST00000670785.1:ENST00000664773.1:ENST00000661703.1:ENST00000658454.1:ENST00000664049.1:ENST00000655058.1:ENST00000366234.7:ENST00000599427.5:ENST00000597318.5:ENST00000625518.2:ENST00000425333.5:ENST00000429599.6:ENST00000432604.5:ENST00000421843.5:ENST00000458686.5:ENST00000421255.5:ENST00000413069.5:ENST00000627019.1	lncRNA	lncRNA	lncRNA	lncRNA	1	78	2	3.49993	4.539235	5.57854	0.0230065	0.00874614	0.102982	0.0613439
chr2	165937671	165937769	1301060	0	-	0.193878	[0,0.29]	chr2	139566	1	INTRON	INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000679840.1:ENST00000680448.1:ENST00000681606.1:ENST00000679671.1:ENST00000464374.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	152	2	2.4325	4.53923	6.64596	0.0127462	0.00161234	0.0773423	0.0248552
chr14	94307976	94308073	6046252	0	-	0.42268	(0.419,0.45]	chr14	593049	14	INTRON	INTRON	SERPINA6	ENSG00000170099.6	ENST00000341584.4:ENST00000555056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.38804	4.539185	4.69033	0.0958674	0.0451818	0.189038	0.154539
chr3	4045671	4045771	1673607	0	-	0.42	(0.419,0.45]	chr3	175305	2178	INTRON	INTRON	SUMF1	ENSG00000144455.14	ENST00000448413.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	36	2	4.38804	4.539185	4.69033	0.0958674	0.0451818	0.189038	0.154539
chr3	78850150	78850250	1836005	0	-	0.42	(0.419,0.45]	chr3	188602	1029	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.38804	4.539185	4.69033	0.0958674	0.0451818	0.189038	0.154539
chr7	55202920	55202998	3373418	0	+	0.435897	(0.419,0.45]	chr7	325454	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000455089.5:ENST00000454757.6	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.38804	4.539185	4.69033	0.0958674	0.0451818	0.189038	0.154539
chr11	64143965	64144064	5049017	0	-	0.555556	(0.523,0.58]	chr11	490257	172	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	273	2	4.39023	4.539165000000001	4.6881	0.00448009	8.29583e-5	0.0436138	0.00237656
chr4	158249845	158249945	2156079	0	+	0.44	(0.419,0.45]	chr4	218463	51	INTRON	INTRON	TMEM144	ENSG00000164124.11	ENST00000296529.11:ENST00000511532.5:ENST00000503404.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	100	2	3.00229	4.53912	6.07595	0.0572793	0.00132452	0.154343	0.0173138
chr3	184319243	184319343	1643920	0	+	0.48	(0.45,0.485]	chr3	172596	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000444134.5:ENST00000442406.5:ENST00000450424.5:ENST00000421110.5:ENST00000435046.7:ENST00000382330.7:ENST00000413967.5:ENST00000426123.5:ENST00000346169.7:ENST00000350481.9:ENST00000440448.5:ENST00000427141.6:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000456033.5:ENST00000411531.5:ENST00000444861.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	534	2	4.34057	4.53856	4.73655	0.00234739	2.63932e-5	0.0305184	0.00102347
chr10	75506987	75507087	4521228	0	+	0.53	(0.523,0.58]	chr10	432249	554	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	3	124	2	2.67959	4.5382	6.39681	0.0126057	0.00509616	0.0768036	0.0467496
chr12	776846	776946	5148868	0	+	0.29	[0,0.29]	chr12	500570	222	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.25528	4.53812	4.82096	0.0456837	0.0399299	0.144065	0.142336
chr3	125550384	125550484	1903750	0	-	0.25	[0,0.29]	chr3	193112	24	INTRON	INTRON	OSBPL11	ENSG00000144909.8	ENST00000296220.6	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.25528	4.53812	4.82096	0.0456837	0.0399299	0.144065	0.142336
chr16	81644358	81644458	6509741	0	+	0.57	(0.523,0.58]	chr16	645926	223	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	1	83	2	2.92656	4.538035	6.14951	0.0289226	0.00793972	0.124	0.0596361
chr10	38056160	38056260	4478518	0	+	0.42	(0.419,0.45]	chr10	428212	17	CDS	CDS:EXON_MRNA:INTRON	ZNF33A	ENSG00000189180.16	ENST00000307441.13:ENST00000374618.7:ENST00000628825.2:ENST00000458705.6:ENST00000432900.7:ENST00000469037.2	protein_coding	protein_coding	protein_coding	protein_coding	1	84	2	3.11129	4.53802	5.96475	0.023073	0.0169309	0.109758	0.088829
chr5	133999798	133999898	2764117	0	-	0.42	(0.419,0.45]	chr5	270978	64	INTRON	INTRON	VDAC1	ENSG00000213585.11	ENST00000265333.8:ENST00000395044.7:ENST00000395047.6:ENST00000425992.2:ENST00000466080.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	82	2	3.31626	4.538005	5.75975	0.0231013	0.0150971	0.102982	0.0857427
chr3	172796935	172797034	1631613	0	+	0.424242	(0.419,0.45]	chr3	170815	100	INTRON	INTRON	ECT2	ENSG00000114346.14	ENST00000232458.9:ENST00000540509.5:ENST00000392692.8:ENST00000417960.5:ENST00000441497.6	protein_coding	protein_coding	protein_coding	protein_coding	1	100	2	3.05795	4.53795	6.01795	0.0529681	0.00152916	0.149208	0.0191213
chr10	75498293	75498393	4521141	0	+	0.49	(0.485,0.523]	chr10	432249	467	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	4	180	2	1.85398	4.537875	7.22177	0.0964809	2.58512e-5	0.189505	0.0010125
chr12	16033352	16033451	5177493	0	+	0.343434	(0.33,0.36]	chr12	504011	3	INTRON	INTRON	DERA	ENSG00000023697.13	ENST00000526521.5:ENST00000428559.7:ENST00000532964.5:ENST00000526530.1:ENST00000530274.5:ENST00000532573.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.49572	4.53765	4.57958	0.103264	0.0288057	0.197541	0.123764
chr3	41233957	41234047	1449388	0	+	0.355556	(0.33,0.36]	chr3	154809	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1:ENST00000645927.1:ENST00000645763.1:ENST00000485265.2:ENST00000644906.1:ENST00000644395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.49572	4.53765	4.57958	0.103264	0.0288057	0.197541	0.123764
chr9	69714872	69714971	4313139	0	-	0.353535	(0.33,0.36]	chr9	412346	55	UTR3	UTR3:EXON_MRNA	PTAR1	ENSG00000188647.13	ENST00000377200.9:ENST00000340434.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.49572	4.53765	4.57958	0.103264	0.0288057	0.197541	0.123764
chr5	79325834	79325932	2464365	0	+	0.469388	(0.45,0.485]	chr5	246141	44	UTR3	UTR3:EXON_MRNA	JMY	ENSG00000152409.9	ENST00000396137.5	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	3.57078	4.5375	5.50422	0.0257993	0.00740503	0.109555	0.0553519
chr5	60463282	60463381	2678789	0	-	0.454545	(0.45,0.485]	chr5	264436	147	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000502484.6:ENST00000509355.5:ENST00000506510.6:ENST00000511382.1:ENST00000505507.6:ENST00000515835.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	78	2	3.42543	4.537325	5.64922	0.020599	0.0103881	0.0982852	0.0682598
chr1	1023359	1023459	948	0	+	0.63	(0.58,1]	chr1	166	5	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.18518	4.5373149999999995	4.88945	0.0388928	0.0374658	0.139793	0.131324
chr10	79108025	79108125	4532435	0	+	0.6	(0.58,1]	chr10	432420	384	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.18518	4.5373149999999995	4.88945	0.0388928	0.0374658	0.139793	0.131324
chr11	70820063	70820163	5062484	0	-	0.63	(0.58,1]	chr11	492714	3	SS5_PROX	SS5_PROX:INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.18518	4.5373149999999995	4.88945	0.0388928	0.0374658	0.139793	0.131324
chr14	104892185	104892282	5926148	0	+	0.71134	(0.58,1]	chr14	579999	21	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.18518	4.5373149999999995	4.88945	0.0388928	0.0374658	0.139793	0.131324
chr16	81686993	81687092	6510181	0	+	0.585859	(0.58,1]	chr16	645979	80	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.18518	4.5373149999999995	4.88945	0.0388928	0.0374658	0.139793	0.131324
chr18	77119920	77120020	7181520	0	-	0.71	(0.58,1]	chr18	730186	143	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1:ENST00000583798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.18518	4.5373149999999995	4.88945	0.0388928	0.0374658	0.139793	0.131324
chr19	39127819	39127919	7259285	0	+	0.63	(0.58,1]	chr19	744153	15	INTRON	INTRON	PAK4	ENSG00000130669.17	ENST00000602004.1:ENST00000599470.5:ENST00000360442.8:ENST00000321944.8:ENST00000593480.5:ENST00000358301.7:ENST00000597766.1:ENST00000593690.5:ENST00000599386.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.18518	4.5373149999999995	4.88945	0.0388928	0.0374658	0.139793	0.131324
chr19	45298222	45298322	7272598	0	+	0.63	(0.58,1]	chr19	746921	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MARK4	ENSG00000007047.16	ENST00000262891.9:ENST00000300843.8	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.18518	4.5373149999999995	4.88945	0.0388928	0.0374658	0.139793	0.131324
chr19	58327114	58327214	7301067	0	+	0.68	(0.58,1]	chr19	752036	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZSCAN22	ENSG00000182318.6	ENST00000329665.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.18518	4.5373149999999995	4.88945	0.0388928	0.0374658	0.139793	0.131324
chr2	238450765	238450864	1074193	0	+	0.585859	(0.58,1]	chr2	116452	44	UTR3	UTR3:EXON_MRNA:INTRON	ASB1	ENSG00000065802.12	ENST00000264607.9:ENST00000481566.1:ENST00000473306.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.18518	4.5373149999999995	4.88945	0.0388928	0.0374658	0.139793	0.131324
chr10	28560532	28560632	4469690	0	+	0.41	(0.39,0.419]	chr10	427649	221	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	98	2	2.98941	4.53691	6.08441	0.0559471	0.00116356	0.154188	0.0157899
chr1	89874541	89874640	181236	0	+	0.393939	(0.39,0.419]	chr1	19585	275	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	1	98	2	3.04731	4.536855	6.0264	0.0514906	0.00134695	0.148503	0.0174765
chr1	36249504	36249604	92033	0	+	0.42	(0.419,0.45]	chr1	10759	237	INTRON	INTRON	THRAP3	ENSG00000054118.15	ENST00000469141.6:ENST00000648638.1:ENST00000354618.10	protein_coding	protein_coding	protein_coding	protein_coding	1	100	2	3.08499	4.53652	5.98805	0.0509743	0.00164584	0.148503	0.0202325
chr4	886770	886869	2178470	0	-	0.636364	(0.58,1]	chr4	220626	11	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	114	2	3.06099	4.536165	6.01134	0.00531709	0.00372067	0.047841	0.0350519
chr3	37863277	37863377	1443276	0	+	0.48	(0.45,0.485]	chr3	153956	6	INTRON	INTRON	CTDSPL	ENSG00000144677.15	ENST00000273179.10:ENST00000443503.6:ENST00000435525.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	210	2	4.33413	4.53612	4.73811	0.00547442	3.37138e-4	0.0488522	0.00660842
chr7	148744318	148744417	3511809	0	+	0.323232	(0.29,0.33]	chr7	338611	30	INTRON	INTRON	CUL1	ENSG00000055130.18	ENST00000409469.5:ENST00000662716.1:ENST00000665936.1:ENST00000663044.1:ENST00000602748.5:ENST00000663835.1:ENST00000655324.1:ENST00000662132.1:ENST00000325222.9:ENST00000656001.1:ENST00000666124.1:ENST00000671421.1:ENST00000671397.1:ENST00000662670.1:ENST00000660240.1:ENST00000662975.1:ENST00000660013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	201	2	4.21906	4.536	4.85294	0.00573196	2.23585e-4	0.0499133	0.00490779
chr18	69463823	69463923	7083806	0	+	0.33	(0.29,0.33]	chr18	722102	622	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	1	92	2	2.95538	4.535945	6.11651	0.0510239	7.13924e-4	0.148503	0.0112151
chr3	71105654	71105754	1826473	0	-	0.42	(0.419,0.45]	chr3	188132	104	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000475937.6:ENST00000327590.9:ENST00000648426.1:ENST00000497355.7:ENST00000648748.3:ENST00000649695.3:ENST00000498215.7:ENST00000484350.5:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000491238.8:ENST00000648384.1:ENST00000648380.1:ENST00000650188.1:ENST00000650068.2:ENST00000468577.6:ENST00000649592.1:ENST00000648794.2:ENST00000649513.1:ENST00000649431.2:ENST00000647614.1:ENST00000472382.7:ENST00000649760.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	38	2	4.08324	4.535455	4.98767	0.0727147	0.0669167	0.199502	0.16272
chr22	42986634	42986734	7823999	0	-	0.5	(0.485,0.523]	chr22	820626	269	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	78	2	3.80685	4.5352999999999994	5.26375	0.0335928	0.00388927	0.124319	0.0363508
chr2	11580403	11580503	720677	0	+	0.41	(0.39,0.419]	chr2	84133	3	SS3_PROX	SS3_PROX:INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000263834.9:ENST00000389825.7:ENST00000381483.6:ENST00000234142.9	protein_coding	protein_coding	protein_coding	protein_coding	7	676	2	4.01472	4.53499	5.05526	0.0028466	2.21489e-5	0.0338268	9.04406e-4
chr20	31668045	31668144	7542482	0	-	0.626263	(0.58,1]	chr20	787260	5	INTRON	INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	73	2	3.95573	4.53464	5.11355	0.0271806	0.00191878	0.112113	0.0223755
chr3	123570966	123571065	1895288	0	-	0.252525	[0,0.29]	chr3	192363	28	INTRON	INTRON	HACD2	ENSG00000206527.10	ENST00000383657.10:ENST00000469317.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.45163	4.53456	4.61749	0.061376	0.0278965	0.158506	0.12105
chr9	75007039	75007139	4318079	0	-	0.28	[0,0.29]	chr9	412763	68	INTRON	INTRON	CARNMT1	ENSG00000156017.13	ENST00000376834.8:ENST00000451153.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.45163	4.53456	4.61749	0.061376	0.0278965	0.158506	0.12105
chr16	29297894	29297994	6433817	0	+	0.48	(0.45,0.485]	chr16	636749	172	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.11446	4.53413	4.9538	0.0592571	0.0569772	0.176157	0.154343
chr6	9026607	9026706	2846536	0	+	0.474747	(0.45,0.485]	chr6	278551	3	INTRON	INTRON	HULC	ENSG00000285219.3	ENST00000643788.1:ENST00000646431.1:ENST00000644892.1:ENST00000644837.1:ENST00000646403.1:ENST00000642798.1:ENST00000642760.1:ENST00000646996.1:ENST00000645379.1:ENST00000645747.1:ENST00000646231.1:ENST00000645796.1:ENST00000693633.1:ENST00000643526.1:ENST00000643635.1:ENST00000643832.1:ENST00000665625.1:ENST00000642877.1:ENST00000644213.2	lncRNA	lncRNA	lncRNA	lncRNA	0	37	2	4.11446	4.53413	4.9538	0.0592571	0.0569772	0.176157	0.154343
chr9	134363886	134363985	4261062	0	+	0.474747	(0.45,0.485]	chr9	406311	369	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.11446	4.53413	4.9538	0.0592571	0.0569772	0.176157	0.154343
chr17	37147368	37147468	6890642	0	-	0.45	(0.419,0.45]	chr17	699651	168	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000619546.4:ENST00000617649.4:ENST00000614482.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	37	2	4.19215	4.534065	4.87598	0.0768574	0.0617113	0.18013	0.174882
chr2	36399985	36400085	758081	0	+	0.44	(0.419,0.45]	chr2	87976	28	INTRON	INTRON	CRIM1	ENSG00000150938.10	ENST00000280527.7:ENST00000426856.1	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.19215	4.534065	4.87598	0.0768574	0.0617113	0.18013	0.174882
chr4	56381558	56381658	2240753	0	-	0.42	(0.419,0.45]	chr4	225849	27	INTRON	INTRON	AASDH	ENSG00000157426.14	ENST00000451613.5:ENST00000602986.5:ENST00000205214.11:ENST00000513376.5:ENST00000514745.5:ENST00000503808.5:ENST00000502617.1:ENST00000510762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.19215	4.534065	4.87598	0.0768574	0.0617113	0.18013	0.174882
chr5	122925954	122926053	2522423	0	+	0.444444	(0.419,0.45]	chr5	250414	345	INTRON	INTRON	SNX24	ENSG00000064652.11	ENST00000513613.5:ENST00000511211.5:ENST00000513881.5:ENST00000395451.8:ENST00000261369.9:ENST00000506996.5:ENST00000511545.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	37	2	4.19215	4.534065	4.87598	0.0768574	0.0617113	0.18013	0.174882
chr6	7572937	7573030	2840178	0	+	0.44086	(0.419,0.45]	chr6	278167	5	INTRON	INTRON	DSP	ENSG00000096696.15	ENST00000418664.2:ENST00000379802.8:ENST00000684395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	37	2	4.19215	4.534065	4.87598	0.0768574	0.0617113	0.18013	0.174882
chr16	12738420	12738520	6551534	0	-	0.36	(0.33,0.36]	chr16	652230	330	INTRON	INTRON	CPPED1	ENSG00000103381.12	ENST00000381774.9:ENST00000433677.6:ENST00000261660.4	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	3.42056	4.53379	5.64702	0.0212683	0.0110831	0.0996805	0.071519
chr2	235629313	235629413	1063891	0	+	0.45	(0.419,0.45]	chr2	115656	1044	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	102	2	3.30797	4.533665	5.75936	0.0368429	0.00285253	0.129203	0.0294017
chr22	38210430	38210530	7724396	0	+	0.6	(0.58,1]	chr22	809114	65	INTRON	INTRON	MAFF	ENSG00000185022.12	ENST00000538999.1:ENST00000538320.5:ENST00000338483.7:ENST00000441709.1:ENST00000417948.5:ENST00000426621.6	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.20215	4.53353	5.86491	0.0136092	0.00707578	0.0811697	0.0558168
chr1	248855279	248855379	709847	0	-	0.54	(0.523,0.58]	chr1	83015	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF692	ENSG00000171163.16	ENST00000463519.5:ENST00000306601.9:ENST00000366471.7:ENST00000533927.5:ENST00000476503.5:ENST00000477070.6:ENST00000412341.6:ENST00000482023.5:ENST00000451251.5:ENST00000470787.6:ENST00000474351.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	76	2	3.51663	4.5333749999999995	5.55012	0.0217068	0.00782908	0.100615	0.0574276
chr2	11363205	11363305	1089498	0	-	0.34	(0.33,0.36]	chr2	118760	48	INTRON	INTRON	ENSG00000230952	ENSG00000230952.1	ENST00000430897.1	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	4.49588	4.5331150000000004	4.57035	0.0945416	0.033477	0.188571	0.133139
chr17	72559021	72559120	6963901	0	-	0.535354	(0.523,0.58]	chr17	710389	246	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	2	105	2	3.44363	4.533105	5.62258	0.0193313	0.00314594	0.0954446	0.0313262
chr11	70782753	70782853	5062109	0	-	0.51	(0.485,0.523]	chr11	492701	649	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	96	2	3.44992	4.533055	5.61619	0.0240794	0.00247695	0.106575	0.0266492
chr5	139657457	139657557	2549735	0	+	0.52	(0.485,0.523]	chr5	253168	59	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	2	137	2	3.1918	4.533055	5.87431	0.0181853	0.00127835	0.0921579	0.0168904
chr1	35886732	35886831	89525	0	+	0.383838	(0.36,0.39]	chr1	10417	29	INTRON	INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5:ENST00000373204.6:ENST00000674426.1:ENST00000674304.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.30212	4.53301	4.7639	0.0811309	0.0494303	0.177951	0.160725
chr18	13013325	13013425	7021558	0	+	0.39	(0.36,0.39]	chr18	717274	3	SS5_PROX	SS5_PROX:INTRON	CEP192	ENSG00000101639.19	ENST00000325971.12:ENST00000506447.5:ENST00000589596.5:ENST00000513432.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.30212	4.53301	4.7639	0.0811309	0.0494303	0.177951	0.160725
chr14	31163399	31163499	5952690	0	-	0.58	(0.523,0.58]	chr14	583296	57	INTRON	INTRON	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000691390.1:ENST00000553957.6:ENST00000687002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	76	2	3.55341	4.53294	5.51247	0.0230387	0.00716661	0.102982	0.0541871
chr2	239373000	239373100	1392442	0	-	0.58	(0.523,0.58]	chr2	148759	197	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	78	2	3.84801	4.53264	5.21727	0.0361597	0.00343547	0.127853	0.0333396
chr11	65443842	65443942	4871780	0	+	0.52	(0.485,0.523]	chr11	468177	212	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	42	3674	2	4.38796	4.532579999999999	4.6772	2.27582e-4	1.27683e-5	0.00851514	6.12982e-4
chr12	132949865	132949965	5542030	0	-	0.5	(0.485,0.523]	chr12	547064	12	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	77	2	3.7132	4.532435	5.35167	0.0294163	0.00492265	0.116079	0.0423296
chr19	38649259	38649359	7257856	0	+	0.56	(0.523,0.58]	chr19	743980	6	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	105	2	2.75313	4.53242	6.31171	0.0173428	0.00594629	0.0927775	0.0506158
chr3	5212918	5213018	1399266	0	+	0.45	(0.419,0.45]	chr3	149908	2	SS3_PROX	SS3_PROX:INTRON	EDEM1	ENSG00000134109.11	ENST00000256497.9	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	3.02039	4.5324	6.04441	0.0276403	0.0149622	0.120359	0.0835955
chr13	98535396	98535496	5747875	0	-	0.41	(0.39,0.419]	chr13	563357	135	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.30157	4.53207	4.76257	0.0822354	0.0496288	0.179396	0.160725
chr14	104776864	104776959	6057657	0	-	0.6	(0.58,1]	chr14	594698	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000557552.1:ENST00000683722.1:ENST00000555528.5:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000544168.5:ENST00000554848.5:ENST00000682269.1:ENST00000555380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	84	2	3.19823	4.53188	5.86553	0.0287301	6.8352e-4	0.115888	0.0108717
chr1	65154083	65154182	158511	0	+	0.525253	(0.523,0.58]	chr1	18050	46	INTRON	INTRON	AK4	ENSG00000162433.15	ENST00000545314.5:ENST00000497030.5:ENST00000470888.6:ENST00000546702.5:ENST00000395334.6:ENST00000327299.8:ENST00000474968.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	78	2	3.18279	4.531755	5.88072	0.0168396	0.0126258	0.0919482	0.0761905
chr10	35428720	35428820	4476597	0	+	0.46	(0.45,0.485]	chr10	428113	335	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	78	2	3.34686	4.531725	5.71659	0.018513	0.0124121	0.0928429	0.0765738
chr12	125119462	125119561	5349496	0	+	0.454545	(0.45,0.485]	chr12	523173	3	INTRON	INTRON	AACS	ENSG00000081760.17	ENST00000316519.11:ENST00000441247.6:ENST00000316543.14:ENST00000539251.5:ENST00000538851.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.41963	4.5315449999999995	4.64346	0.0850039	0.0355247	0.181766	0.137983
chr2	73851385	73851478	833265	0	+	0.473118	(0.45,0.485]	chr2	94123	5	INTRON	INTRON	STAMBP	ENSG00000124356.17	ENST00000339566.7:ENST00000684095.1:ENST00000682847.1:ENST00000683317.1:ENST00000683036.1:ENST00000682157.1:ENST00000683349.1:ENST00000684337.1:ENST00000683247.1:ENST00000682683.1:ENST00000682329.1:ENST00000683149.1:ENST00000682851.1:ENST00000394070.7:ENST00000683728.1:ENST00000409707.6:ENST00000683518.1:ENST00000684585.1:ENST00000683434.1:ENST00000682352.1:ENST00000684697.1:ENST00000682592.1:ENST00000683718.1:ENST00000682423.1:ENST00000478946.2:ENST00000684200.1:ENST00000684355.1:ENST00000684774.1:ENST00000536064.2:ENST00000683465.1:ENST00000684716.1:ENST00000683016.1:ENST00000684174.1:ENST00000684703.1:ENST00000682799.1:ENST00000682998.1:ENST00000682379.1:ENST00000684312.1:ENST00000683852.1:ENST00000684321.1:ENST00000394073.6:ENST00000684671.1:ENST00000682848.1:ENST00000683877.1:ENST00000683530.1:ENST00000683027.1:ENST00000683304.1:ENST00000682784.1:ENST00000683205.1:ENST00000682351.1:ENST00000683818.1:ENST00000684426.1:ENST00000683582.1:ENST00000683417.1:ENST00000683594.1:ENST00000682387.1:ENST00000682747.1:ENST00000682105.1:ENST00000683928.1:ENST00000683391.1:ENST00000684758.1:ENST00000682558.1:ENST00000683902.1:ENST00000432295.7:ENST00000486458.2:ENST00000683314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.41963	4.5315449999999995	4.64346	0.0850039	0.0355247	0.181766	0.137983
chr20	5146838	5146938	7423479	0	+	0.46	(0.45,0.485]	chr20	773375	177	INTRON	INTRON	CDS2	ENSG00000101290.14	ENST00000467923.5:ENST00000450570.1:ENST00000460006.6:ENST00000468817.5:ENST00000486875.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.41963	4.5315449999999995	4.64346	0.0850039	0.0355247	0.181766	0.137983
chr3	31938872	31938971	1729982	0	-	0.454545	(0.45,0.485]	chr3	179055	195	INTRON	INTRON	OSBPL10	ENSG00000144645.15	ENST00000396556.7:ENST00000438237.6:ENST00000480671.5:ENST00000466604.5:ENST00000479173.1:ENST00000463504.5:ENST00000452791.1:ENST00000465626.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.41963	4.5315449999999995	4.64346	0.0850039	0.0355247	0.181766	0.137983
chr16	89293791	89293891	6659743	0	-	0.52	(0.485,0.523]	chr16	666648	16	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	130	2	3.30515	4.531495	5.75784	0.0154142	0.00256238	0.0849828	0.0273911
chr15	57237195	57237295	6113546	0	+	0.29	[0,0.29]	chr15	601681	27	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000561346.5:ENST00000561235.5:ENST00000560764.5:ENST00000543579.5:ENST00000537840.5:ENST00000343827.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	77	2	3.95567	4.5313	5.10693	0.0292928	0.00237247	0.116079	0.0259626
chr16	50623496	50623596	6452164	0	+	0.63	(0.58,1]	chr16	639918	14	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	5	381	2	4.38192	4.53111	4.6803	0.00104306	2.04249e-5	0.019403	8.51819e-4
chrX	9541591	9541690	7843214	0	+	0.414141	(0.39,0.419]	chrX	822414	62	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5	protein_coding	protein_coding	protein_coding	protein_coding	1	100	2	3.32988	4.53091	5.73194	0.0338241	0.00276973	0.124319	0.0286873
chr17	72557025	72557125	6963881	0	-	0.57	(0.523,0.58]	chr17	710389	226	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	2	215	2	3.62324	4.5308	5.43836	0.0180195	3.35107e-5	0.0921579	0.00122507
chr7	77709036	77709136	3400433	0	+	0.35	(0.33,0.36]	chr7	328497	113	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	3.22121	4.53079	5.84037	0.0171454	0.0156381	0.0923809	0.0850479
chr8	120583513	120583613	4057734	0	-	0.39	(0.36,0.39]	chr8	386589	79	INTRON	INTRON	SNTB1	ENSG00000172164.15	ENST00000395601.7:ENST00000517992.2:ENST00000648490.1:ENST00000519177.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	130	2	2.81422	4.530495	6.24677	0.0108035	0.00931845	0.070521	0.0649153
chr2	42711658	42711756	776903	0	+	0.418367	(0.39,0.419]	chr2	89176	22	INTRON	INTRON	MTA3	ENSG00000057935.14	ENST00000405592.5:ENST00000406652.5:ENST00000405094.2:ENST00000409019.5:ENST00000467925.5:ENST00000478602.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	99	2	3.25813	4.530445	5.80276	0.0377191	0.00233691	0.131324	0.0257208
chr12	125123121	125123220	5349533	0	+	0.555556	(0.523,0.58]	chr12	523174	34	EXON_MRNA	EXON_MRNA:INTRON	AACS	ENSG00000081760.17	ENST00000316519.11:ENST00000441247.6:ENST00000316543.14:ENST00000539251.5:ENST00000538851.5:ENST00000545511.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.34118	4.5302	4.71922	0.0721601	0.0372357	0.168159	0.139793
chr13	113005078	113005178	5655674	0	+	0.53	(0.523,0.58]	chr13	555138	27	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.34118	4.5302	4.71922	0.0721601	0.0372357	0.168159	0.139793
chr16	81520187	81520287	6508495	0	+	0.55	(0.523,0.58]	chr16	645911	243	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.34118	4.5302	4.71922	0.0721601	0.0372357	0.168159	0.139793
chr16	85382639	85382739	6516897	0	+	0.54	(0.523,0.58]	chr16	646391	233	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.34118	4.5302	4.71922	0.0721601	0.0372357	0.168159	0.139793
chr16	85422222	85422322	6517293	0	+	0.53	(0.523,0.58]	chr16	646391	629	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.34118	4.5302	4.71922	0.0721601	0.0372357	0.168159	0.139793
chr19	44710158	44710258	7386688	0	-	0.56	(0.523,0.58]	chr19	766957	106	INTRON	INTRON	CEACAM16-AS1	ENSG00000266903.2	ENST00000662585.1:ENST00000590796.1	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	4.34118	4.5302	4.71922	0.0721601	0.0372357	0.168159	0.139793
chr19	56154998	56155098	7294452	0	+	0.56	(0.523,0.58]	chr19	751145	8	EXON_MRNA	EXON_MRNA:INTRON	ZNF444	ENSG00000167685.15	ENST00000587195.5:ENST00000337080.8:ENST00000587664.5:ENST00000592949.5:ENST00000587236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.34118	4.5302	4.71922	0.0721601	0.0372357	0.168159	0.139793
chr2	108587716	108587815	871485	0	+	0.535354	(0.523,0.58]	chr2	98292	70	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1:ENST00000695519.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.34118	4.5302	4.71922	0.0721601	0.0372357	0.168159	0.139793
chr2	235893644	235893744	1066550	0	+	0.58	(0.523,0.58]	chr2	115730	98	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.34118	4.5302	4.71922	0.0721601	0.0372357	0.168159	0.139793
chr4	185212551	185212651	2171018	0	+	0.55	(0.523,0.58]	chr4	219941	19	INTRON	INTRON	SNX25	ENSG00000109762.17	ENST00000504273.5:ENST00000618785.4:ENST00000652585.2:ENST00000264694.13:ENST00000506896.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.34118	4.5302	4.71922	0.0721601	0.0372357	0.168159	0.139793
chr7	38893299	38893399	3581225	0	-	0.53	(0.523,0.58]	chr7	345197	237	INTRON	INTRON	VPS41	ENSG00000006715.16	ENST00000310301.9:ENST00000395969.6:ENST00000265745.13:ENST00000414632.5:ENST00000418457.6:ENST00000457055.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.34118	4.5302	4.71922	0.0721601	0.0372357	0.168159	0.139793
chr9	133869722	133869821	4429097	0	-	0.565657	(0.523,0.58]	chr9	423310	79	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.34118	4.5302	4.71922	0.0721601	0.0372357	0.168159	0.139793
chrX	9509831	9509931	7842893	0	+	0.53	(0.523,0.58]	chrX	822404	76	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.34118	4.5302	4.71922	0.0721601	0.0372357	0.168159	0.139793
chr4	101147670	101147770	2291151	0	-	0.37	(0.36,0.39]	chr4	230542	382	INTRON	INTRON	PPP3CA	ENSG00000138814.17	ENST00000512215.5:ENST00000394854.8:ENST00000323055.10:ENST00000394853.8:ENST00000507176.5:ENST00000492351.6:ENST00000510292.1:ENST00000529324.5:ENST00000525819.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	81	2	3.68627	4.52967	5.37307	0.0361409	0.00632798	0.127853	0.0501889
chr2	149613832	149613932	920084	0	+	0.38	(0.36,0.39]	chr2	102788	194	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	1	86	2	4.00972	4.529605	5.04949	0.0563927	0.0028904	0.154188	0.0297318
chr11	70767265	70767365	5061954	0	-	0.42	(0.419,0.45]	chr11	492701	494	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	82	2	3.23773	4.529545000000001	5.82136	0.0210659	0.0178095	0.0996078	0.0943752
chr3	32864719	32864819	1439339	0	+	0.49	(0.485,0.523]	chr3	153401	454	INTRON	INTRON	TRIM71	ENSG00000206557.6	ENST00000383763.6	protein_coding	protein_coding	protein_coding	protein_coding	3	123	2	2.79102	4.529325	6.26763	0.00974572	0.00639185	0.0664239	0.0529032
chr17	3824658	3824752	6838733	0	-	0.319149	(0.29,0.33]	chr17	691919	7	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NCBP3	ENSG00000074356.17	ENST00000389005.6:ENST00000574911.5:ENST00000575815.5:ENST00000577169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	92	2	3.25815	4.52896	5.79977	0.0316508	0.00164635	0.121016	0.0202325
chr1	1034005	1034105	1055	0	+	0.81	(0.58,1]	chr1	166	112	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.29454	4.528689999999999	4.76284	0.0471737	0.0305531	0.143232	0.126768
chr10	35448675	35448775	4476799	0	+	0.65	(0.58,1]	chr10	428120	141	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.29454	4.528689999999999	4.76284	0.0471737	0.0305531	0.143232	0.126768
chr12	7155944	7156022	5167908	0	+	0.589744	(0.58,1]	chr12	502927	2	UTR5	UTR5:EXON_MRNA:INTRON	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000537408.1:ENST00000535313.2:ENST00000331148.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.29454	4.528689999999999	4.76284	0.0471737	0.0305531	0.143232	0.126768
chr14	104779032	104779125	6057680	0	-	0.666667	(0.58,1]	chr14	594699	6	INTRON	INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000683722.1:ENST00000555528.5:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000554848.5:ENST00000682269.1:ENST00000555380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.29454	4.528689999999999	4.76284	0.0471737	0.0305531	0.143232	0.126768
chr16	307994	308093	6529587	0	-	0.585859	(0.58,1]	chr16	648369	32	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.29454	4.528689999999999	4.76284	0.0471737	0.0305531	0.143232	0.126768
chr18	58085240	58085340	7071856	0	+	0.59	(0.58,1]	chr18	721100	234	INTRON	INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5:ENST00000588516.5:ENST00000456986.5:ENST00000675502.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.29454	4.528689999999999	4.76284	0.0471737	0.0305531	0.143232	0.126768
chr2	3315960	3316060	1081267	0	-	0.61	(0.58,1]	chr2	117633	333	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.29454	4.528689999999999	4.76284	0.0471737	0.0305531	0.143232	0.126768
chr21	8810667	8810766	7637422	0	-	0.636364	(0.58,1]	chr21	798930	31	INTRON	INTRON	ENSG00000286033	ENSG00000286033.1	ENST00000651312.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.29454	4.528689999999999	4.76284	0.0471737	0.0305531	0.143232	0.126768
chr9	134343825	134343925	4260861	0	+	0.66	(0.58,1]	chr9	406311	168	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.29454	4.528689999999999	4.76284	0.0471737	0.0305531	0.143232	0.126768
chr11	70656133	70656233	5060836	0	-	0.52	(0.485,0.523]	chr11	492672	13	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.33772	4.52868	4.71964	0.0718646	0.03818	0.168159	0.140822
chr6	31735062	31735162	3119436	0	-	0.66	(0.58,1]	chr6	303332	4	INTRON	INTRON	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000616760.1:ENST00000375784.8	protein_coding	protein_coding	protein_coding	protein_coding	2	121	2	3.19063	4.52808	5.86553	0.0132754	6.8352e-4	0.0787251	0.0108717
chr6	169575238	169575338	3303607	0	-	0.58	(0.523,0.58]	chr6	319808	23	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	102	2	2.98195	4.527975	6.074	0.010154	0.00906277	0.0677546	0.0637469
chr1	228144327	228144412	358027	0	+	0.647059	(0.58,1]	chr1	40402	1	UTR5	UTR5:EXON_MRNA:INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5:ENST00000366718.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	72	2	3.25332	4.52761	5.8019	0.0120565	0.007984	0.0754623	0.0596361
chr11	57303871	57303969	5038255	0	-	0.520408	(0.485,0.523]	chr11	488042	5	INTRON	INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	270	2	4.47504	4.527595	4.58015	0.00379011	1.20666e-4	0.0396388	0.00316054
chr16	85592626	85592726	6518999	0	+	0.51	(0.485,0.523]	chr16	646396	359	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	3.46766	4.527445	5.58723	0.0203514	0.0089247	0.0979211	0.0620271
chr17	749162	749256	6824479	0	-	0.574468	(0.523,0.58]	chr17	689919	13	UTR5	UTR5:EXON_MRNA:INTRON	GEMIN4	ENSG00000179409.11	ENST00000319004.6:ENST00000576778.1:ENST00000437269.1:ENST00000573482.5:ENST00000570364.5:ENST00000576383.1:ENST00000574958.1	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	3.93421	4.527355	5.1205	0.0416463	0.00274644	0.136301	0.028553
chr14	103103842	103103940	5921851	0	+	0.673469	(0.58,1]	chr14	579208	4	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000559116.1:ENST00000560925.5:ENST00000560102.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	280	2	4.22463	4.527115	4.8296	0.00104863	9.82766e-5	0.0194601	0.00269868
chr2	149618632	149618732	920132	0	+	0.4	(0.39,0.419]	chr2	102788	242	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	2	119	2	3.68208	4.5268999999999995	5.37172	0.0367885	0.00216425	0.129052	0.0242706
chr10	103702507	103702606	4757125	0	-	0.555556	(0.523,0.58]	chr10	454791	90	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	103	2	2.85567	4.526705	6.19774	0.0136981	0.0072907	0.0814223	0.0567247
chr10	79202885	79202984	4533387	0	+	0.50505	(0.485,0.523]	chr10	432445	8	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	3.17158	4.526365	5.88115	0.017456	0.012541	0.0928044	0.0761905
chr12	132544515	132544615	5353061	0	+	0.5	(0.485,0.523]	chr12	523670	162	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	2	102	2	3.05773	4.526235	5.99474	0.0103305	0.00856934	0.0684871	0.0612055
chr3	65418239	65418339	1809632	0	-	0.39	(0.36,0.39]	chr3	187193	164	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5	protein_coding	protein_coding	protein_coding	protein_coding	1	83	2	3.05132	4.526155	6.00099	0.0252548	0.0139273	0.114966	0.0805916
chr3	149594637	149594737	1940567	0	-	0.38	(0.36,0.39]	chr3	197491	185	INTRON	INTRON	WWTR1	ENSG00000018408.15	ENST00000465804.5:ENST00000360632.8:ENST00000467467.5:ENST00000479238.1	protein_coding	protein_coding	protein_coding	protein_coding	2	108	2	2.89871	4.526065	6.15342	0.0144142	0.0108737	0.0833845	0.0707085
chr6	163499990	163500090	3070564	0	+	0.46	(0.45,0.485]	chr6	298578	207	INTRON	INTRON	QKI	ENSG00000112531.17	ENST00000361758.8:ENST00000453779.6:ENST00000275262.11:ENST00000392127.6:ENST00000361752.8:ENST00000361195.6:ENST00000424802.7:ENST00000545607.5:ENST00000544436.5:ENST00000537041.5:ENST00000545346.1:ENST00000544823.5:ENST00000537883.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	104	2	3.12149	4.525915	5.93034	0.0130794	0.00776276	0.0782396	0.0570408
chr18	58124845	58124945	7072258	0	+	0.38	(0.36,0.39]	chr18	721123	243	INTRON	INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5:ENST00000588516.5:ENST00000456986.5:ENST00000675502.1:ENST00000675554.1:ENST00000675137.1:ENST00000587547.1:ENST00000675227.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	80	2	3.34723	4.5259	5.70457	0.022152	0.0136148	0.101784	0.0811697
chr2	62996866	62996966	816895	0	+	0.49	(0.485,0.523]	chr2	92204	1	SS5_PROX	SS5_PROX:INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000496857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	98	2	3.56212	4.52589	5.48966	0.0199384	0.0033837199999999998	0.0967486	0.0328791
chr6	158027762	158027862	3059770	0	+	0.59	(0.58,1]	chr6	297374	5	EXON_MRNA	EXON_MRNA:INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2:ENST00000640569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	114	2	2.78615	4.5257950000000005	6.26544	0.0285184	2.06156e-4	0.115242	0.00461335
chr4	888648	888747	2178489	0	-	0.656566	(0.58,1]	chr4	220626	30	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	74	2	4.04556	4.525705	5.00585	0.0323732	0.00148416	0.121593	0.0186585
chr20	38426771	38426860	7561093	0	-	0.539326	(0.523,0.58]	chr20	789769	4	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000671309.1:ENST00000669405.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	92	2	2.98385	4.52566	6.06747	0.0505794	7.30845e-4	0.148456	0.0113963
chr20	17961804	17961899	7532661	0	-	0.452632	(0.45,0.485]	chr20	786120	8	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000483485.5:ENST00000377759.9:ENST00000431277.5:ENST00000419004.2:ENST00000474883.5:ENST00000475716.5:ENST00000469704.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	188	2	2.34832	4.525565	6.70281	0.0135136	0.00338129	0.0810237	0.0371948
chr20	32378044	32378144	7455886	0	+	0.54	(0.523,0.58]	chr20	776143	56	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	372	2	4.40034	4.525449999999999	4.65056	0.00184972	9.33011e-5	0.0268565	0.00260062
chr1	228143527	228143627	358019	0	+	0.55	(0.523,0.58]	chr1	40401	13	INTRON	INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	105	2	2.71726	4.52536	6.33346	0.0188054	0.00571732	0.0980631	0.0498083
chr6	157311485	157311585	3298406	0	-	0.57	(0.523,0.58]	chr6	319197	181	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	4	141	2	2.44252	4.52519	6.60786	0.0163229	0.00345115	0.0908307	0.037649
chr4	77818573	77818673	2256067	0	-	0.58	(0.523,0.58]	chr4	227829	2	SS5_PROX	SS5_PROX:INTRON	CNOT6L	ENSG00000138767.14	ENST00000504123.7:ENST00000649644.1:ENST00000515506.6:ENST00000512485.6:ENST00000504804.7:ENST00000506166.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	96	2	3.47085	4.524825	5.5788	0.0233215	0.00262418	0.103725	0.0278348
chr3	65621871	65621971	1811688	0	-	0.47	(0.45,0.485]	chr3	187273	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000483466.5:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	207	2	4.17918	4.524775	4.87037	0.00726784	2.29543e-4	0.0567247	0.00498593
chr2	73050399	73050496	1189318	0	-	0.57732000000000006	(0.523,0.58]	chr2	128891	1	INTRON	INTRON	SFXN5	ENSG00000144040.13	ENST00000272433.7:ENST00000461352.5:ENST00000474528.5:ENST00000411783.5:ENST00000410065.5:ENST00000416579.5:ENST00000450185.5:ENST00000442582.1:ENST00000487508.5:ENST00000497144.5:ENST00000479293.5:ENST00000485057.5:ENST00000475630.5:ENST00000472259.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	77	2	3.229	4.5246949999999995	5.82039	0.0152072	0.0139724	0.0861813	0.0805959
chr12	120984360	120984459	5340974	0	+	0.474747	(0.45,0.485]	chr12	521546	49	INTRON	INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000400024.6:ENST00000560968.5:ENST00000402929.5:ENST00000535955.5:ENST00000538626.2:ENST00000538646.5:ENST00000541924.5:ENST00000544574.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	94	2	2.94003	4.524325	6.10862	0.0561701	8.0459e-4	0.154188	0.012189
chr2	239283775	239283875	1391546	0	-	0.48	(0.45,0.485]	chr2	148740	322	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	94	2	2.94003	4.524325	6.10862	0.0561701	8.0459e-4	0.154188	0.012189
chr6	16715881	16715981	3104004	0	-	0.46	(0.45,0.485]	chr6	300893	480	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6:ENST00000495178.1:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	95	2	3.25658	4.524245	5.79191	0.0347918	0.00183113	0.126561	0.0216571
chr2	97172754	97172854	853828	0	+	0.42	(0.419,0.45]	chr2	96485	46	INTRON	INTRON	ANKRD36	ENSG00000135976.21	ENST00000420699.9:ENST00000652721.1:ENST00000461153.7	protein_coding	protein_coding	protein_coding	protein_coding	1	83	2	3.11129	4.52424	5.93719	0.023073	0.0176643	0.109758	0.0909046
chr10	37839310	37839410	4673958	0	-	0.35	(0.33,0.36]	chr10	445799	8	INTRON	INTRON	ZNF248	ENSG00000198105.16	ENST00000615949.6:ENST00000485560.5:ENST00000395867.8:ENST00000357328.8:ENST00000611278.4:ENST00000374648.7:ENST00000395873.7:ENST00000395874.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.40703	4.52417	4.64131	0.0867669	0.0390931	0.182221	0.142605
chr12	49384757	49384857	5225341	0	+	0.35	(0.33,0.36]	chr12	507159	131	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549538.5:ENST00000549412.5:ENST00000550643.5:ENST00000548654.5:ENST00000548710.5:ENST00000549179.5:ENST00000548377.5:ENST00000549298.5:ENST00000552918.6:ENST00000549375.5:ENST00000553127.5:ENST00000321898.10:ENST00000551540.5:ENST00000548777.5:ENST00000552171.1:ENST00000547865.5:ENST00000548388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.40703	4.52417	4.64131	0.0867669	0.0390931	0.182221	0.142605
chr13	45399943	45400034	5702883	0	-	0.351648	(0.33,0.36]	chr13	559485	5	INTRON	INTRON	SLC25A30	ENSG00000174032.17	ENST00000519676.6:ENST00000523988.5:ENST00000539591.5:ENST00000310862.11:ENST00000618165.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.40703	4.52417	4.64131	0.0867669	0.0390931	0.182221	0.142605
chr18	35057525	35057625	7045103	0	+	0.34	(0.33,0.36]	chr18	719361	154	INTRON	INTRON	MAPRE2	ENSG00000166974.13	ENST00000413393.5:ENST00000591734.5:ENST00000589180.5:ENST00000587359.5:ENST00000436190.6:ENST00000588349.6:ENST00000538170.6:ENST00000300249.10:ENST00000588910.5:ENST00000585592.1:ENST00000589699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.40703	4.52417	4.64131	0.0867669	0.0390931	0.182221	0.142605
chr22	33837242	33837342	7802038	0	-	0.35	(0.33,0.36]	chr22	817639	753	INTRON	INTRON	LARGE1	ENSG00000133424.22	ENST00000397394.8:ENST00000413114.6:ENST00000676070.1:ENST00000674543.1:ENST00000676370.1:ENST00000354992.7:ENST00000402320.6:ENST00000675416.1:ENST00000676132.1:ENST00000674789.1:ENST00000675277.1:ENST00000434071.6:ENST00000432776.6:ENST00000423375.2:ENST00000430220.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.40703	4.52417	4.64131	0.0867669	0.0390931	0.182221	0.142605
chr7	79418969	79419069	3626189	0	-	0.34	(0.33,0.36]	chr7	349238	29	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000628997.1:ENST00000636234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.40703	4.52417	4.64131	0.0867669	0.0390931	0.182221	0.142605
chr13	32196482	32196581	5562623	0	+	0.424242	(0.419,0.45]	chr13	548708	18	INTRON	INTRON	FRY	ENSG00000073910.23	ENST00000645780.1:ENST00000647500.1:ENST00000642040.1:ENST00000542859.6	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.29342	4.52416	4.7549	0.0888907	0.0526662	0.183874	0.167062
chr2	134369604	134369704	897938	0	+	0.45	(0.419,0.45]	chr2	101263	68	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.29342	4.52416	4.7549	0.0888907	0.0526662	0.183874	0.167062
chr22	28310141	28310241	7778131	0	-	0.42	(0.419,0.45]	chr22	815737	31	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7:ENST00000490475.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.29342	4.52416	4.7549	0.0888907	0.0526662	0.183874	0.167062
chr10	34684465	34684565	4670501	0	-	0.54	(0.523,0.58]	chr10	445537	49	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	4	323	2	4.35281	4.524145	4.69548	0.00248377	1.13626e-4	0.0315244	0.00301422
chr10	131918786	131918886	4616204	0	+	0.6	(0.58,1]	chr10	441069	58	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	75	2	3.03676	4.52405	6.01134	0.0198789	0.00531709	0.100864	0.047841
chr1	8601404	8601503	393564	0	-	0.50505	(0.485,0.523]	chr1	45045	107	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	125	2	2.53144	4.523804999999999	6.51617	0.0180879	0.00406194	0.0954351	0.0413652
chr2	3287716	3287816	1080984	0	-	0.45	(0.419,0.45]	chr2	117633	50	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	242	2	3.57923	4.5235900000000004	5.46795	0.0243601	5.88864e-5	0.106605	0.00184682
chr14	37596508	37596607	5786934	0	+	0.515152	(0.485,0.523]	chr14	567058	1	INTRON	INTRON	TTC6	ENSG00000139865.17	ENST00000553443.6	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	3.38908	4.5234950000000005	5.65791	0.0181582	0.0107186	0.0921579	0.0700744
chr18	58046018	58046118	7071459	0	+	0.39	(0.36,0.39]	chr18	721082	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	688	2	4.28831	4.52347	4.75863	0.00165478	5.39066e-5	0.0251425	0.0017347
chr1	43595963	43596062	107410	0	+	0.636364	(0.58,1]	chr1	13240	30	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.56821	4.5233	5.47839	0.0145198	0.00550024	0.0823104	0.0454065
chr14	81527376	81527464	6023502	0	-	0.375	(0.36,0.39]	chr14	591200	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SEL1L	ENSG00000071537.14	ENST00000336735.9:ENST00000555824.5:ENST00000557372.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.48559	4.523175	4.56076	0.103289	0.036329	0.197541	0.139793
chr2	63009456	63009556	817021	0	+	0.38	(0.36,0.39]	chr2	92205	123	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000496857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.48559	4.523175	4.56076	0.103289	0.036329	0.197541	0.139793
chr11	96252094	96252194	5112657	0	-	0.38	(0.36,0.39]	chr11	496566	1582	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	2	148	2	3.24254	4.522935	5.80333	0.019711	0.00231859	0.0958249	0.0255753
chr7	157339537	157339631	3521734	0	+	0.606383	(0.58,1]	chr7	340127	14	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	70	2	3.52722	4.522675	5.51813	0.013519	0.00611467	0.0792526	0.0489549
chr2	206084105	206084204	1363529	0	-	0.232323	[0,0.29]	chr2	145053	201	INTRON	INTRON	INO80D	ENSG00000114933.16	ENST00000403263.6:ENST00000414320.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.35679	4.52267	4.68855	0.0554735	0.0332741	0.154188	0.133139
chr10	103835718	103835818	4758462	0	-	0.54	(0.523,0.58]	chr10	454819	340	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	2	102	2	2.92019	4.522485	6.12478	0.0117692	0.00829271	0.0743709	0.0610772
chr1	149547929	149548023	239142	0	+	0.404255	(0.39,0.419]	chr1	26934	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF19	ENSG00000271383.8	ENST00000651566.2:ENST00000611931.4:ENST00000612881.4:ENST00000369227.7	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.48504	4.522235	4.55943	0.104562	0.0364893	0.19835	0.139793
chr14	89279849	89279949	6026897	0	-	0.41	(0.39,0.419]	chr14	591436	154	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.48504	4.522235	4.55943	0.104562	0.0364893	0.19835	0.139793
chr16	81567975	81568075	6508973	0	+	0.4	(0.39,0.419]	chr16	645911	721	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.48504	4.522235	4.55943	0.104562	0.0364893	0.19835	0.139793
chr8	122885727	122885826	3910703	0	+	0.40404	(0.39,0.419]	chr8	373489	218	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6:ENST00000534247.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.48504	4.522235	4.55943	0.104562	0.0364893	0.19835	0.139793
chr9	91216406	91216506	4332601	0	-	0.4	(0.39,0.419]	chr9	413983	3	SS3_PROX	SS3_PROX:INTRON	AUH	ENSG00000148090.12	ENST00000303617.5:ENST00000375731.9:ENST00000473695.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.48504	4.522235	4.55943	0.104562	0.0364893	0.19835	0.139793
chr19	51347843	51347941	7399064	0	-	0.397959	(0.39,0.419]	chr19	769723	9	EXON_MRNA	EXON_MRNA:INTRON	ETFB	ENSG00000105379.10	ENST00000309244.9:ENST00000354232.8:ENST00000596253.1:ENST00000594361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	110	2	2.7112	4.52214	6.33308	0.0217306	0.00825437	0.106188	0.0609913
chr20	37394777	37394875	7473050	0	+	0.612245	(0.58,1]	chr20	778188	1	INTRON	INTRON	SRC	ENSG00000197122.13	ENST00000692112.1:ENST00000692423.1:ENST00000373578.7:ENST00000373567.6:ENST00000373558.2:ENST00000358208.9:ENST00000489153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	94	2	3.30794	4.52198	5.73602	0.00904546	0.00347194	0.0637469	0.0336158
chr22	32670958	32671058	7791368	0	-	0.51	(0.485,0.523]	chr22	817442	407	INTRON	INTRON	SYN3	ENSG00000185666.15	ENST00000358763.7:ENST00000462268.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	79	2	3.92296	4.52194	5.12092	0.0414411	0.00288574	0.136301	0.0297057
chr16	16157262	16157362	6556427	0	-	0.41	(0.39,0.419]	chr16	653061	2	SS5_PROX	SS5_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	97	2	3.04731	4.521905	5.9965	0.0514906	0.00145172	0.148503	0.0184691
chr1	3472577	3472672	5837	0	+	0.673684	(0.58,1]	chr1	1237	1	SS3_PROX	SS3_PROX:INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5:ENST00000464620.1:ENST00000418137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	96	2	3.89863	4.5218	5.14497	0.00766639	0.00474658	0.0583292	0.0413976
chr11	70797542	70797642	5062257	0	-	0.59	(0.58,1]	chr11	492701	797	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	76	2	2.97713	4.52156	6.06599	0.0226795	0.00477081	0.108193	0.0450109
chr2	101134141	101134240	1239925	0	-	0.474747	(0.45,0.485]	chr2	133786	243	INTRON	INTRON	TBC1D8	ENSG00000204634.13	ENST00000409318.2:ENST00000376840.8:ENST00000463469.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	280	2	4.25079	4.52134	4.79189	0.00230807	3.70006e-4	0.0302623	0.00704866
chr12	74541077	74541176	5271233	0	+	0.444444	(0.419,0.45]	chr12	513972	28	UTR3	UTR3:EXON_MRNA	ATXN7L3B	ENSG00000253719.4	ENST00000519948.4	protein_coding	protein_coding	protein_coding	protein_coding	3	305	2	4.22577	4.521285	4.8168	0.00300582	5.4153e-4	0.0349182	0.00924172
chr19	46774971	46775061	7391444	0	-	0.544444	(0.523,0.58]	chr19	767897	2	UTR3	UTR3:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6	protein_coding	protein_coding	protein_coding	protein_coding	46	3076	2	4.32387	4.52121	4.71855	2.95928e-4	1.22664e-5	0.00979992	5.93344e-4
chr22	50675936	50676028	7754923	0	+	0.565217	(0.523,0.58]	chr22	812695	3	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000692848.1:ENST00000262795.7:ENST00000691768.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	76	2	3.31719	4.52103	5.72487	0.0163679	0.0124719	0.0875379	0.0765738
chr16	46900990	46901090	6442593	0	+	0.62	(0.58,1]	chr16	639006	2	SS5_PROX	SS5_PROX:INTRON	GPT2	ENSG00000166123.14	ENST00000340124.9:ENST00000562132.5:ENST00000440783.2	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.48503	4.52092	5.55681	0.0126042	0.006811	0.0761905	0.0524379
chr4	914029	914098	2178761	0	-	0.73913	(0.58,1]	chr4	220689	1	SS3_PROX	SS3_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000512325.3:ENST00000510022.5:ENST00000511229.5:ENST00000511983.5:ENST00000628912.1:ENST00000513935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	70	2	3.48503	4.52092	5.55681	0.0126042	0.006811	0.0761905	0.0524379
chr20	35318433	35318533	7552618	0	-	0.46	(0.45,0.485]	chr20	788509	31	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000497717.5:ENST00000443429.5:ENST00000438533.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	77	2	3.46316	4.52085	5.57854	0.0230065	0.00952494	0.102982	0.0650078
chr14	34980932	34981031	5958191	0	-	0.50505	(0.485,0.523]	chr14	584010	84	INTRON	INTRON	SRP54-AS1	ENSG00000258704.7	ENST00000692503.1:ENST00000690110.1:ENST00000690001.1:ENST00000688072.1:ENST00000693002.1:ENST00000556355.5:ENST00000555015.5:ENST00000693259.1:ENST00000636540.1:ENST00000556705.6:ENST00000691849.1:ENST00000686430.1:ENST00000686298.1:ENST00000688866.1:ENST00000689842.1:ENST00000554945.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	2	103	2	2.84351	4.52084	6.19817	0.0142636	0.00723584	0.0833845	0.0565323
chr8	133296047	133296129	4084287	0	-	0.560976	(0.523,0.58]	chr8	388363	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	296	2	3.73564	4.520395000000001	5.30515	0.00509102	0.00357565	0.0433513	0.0383635
chr11	115318043	115318143	5129266	0	-	0.26	[0,0.29]	chr11	498106	307	INTRON	INTRON	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000541434.5:ENST00000543249.1:ENST00000540951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	98	2	3.15177	4.520235	5.8887	0.00739414	0.00624583	0.0573244	0.0497681
chr1	9296991	9297091	19624	0	+	0.6	(0.58,1]	chr1	2205	20	INTRON	INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11:ENST00000450402.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.49116	4.520215	4.54927	0.0643046	0.0207449	0.161669	0.102713
chr1	227769616	227769716	357671	0	+	0.64	(0.58,1]	chr1	40323	2	INTRON	INTRON	SNAP47	ENSG00000143740.15	ENST00000681827.1:ENST00000679575.1:ENST00000680854.1:ENST00000681006.1:ENST00000366760.5:ENST00000681447.1:ENST00000680992.1:ENST00000680695.1:ENST00000366759.9:ENST00000315781.10:ENST00000681685.1:ENST00000681678.1:ENST00000681149.1:ENST00000418653.6:ENST00000617596.5:ENST00000681929.1:ENST00000478768.3:ENST00000426344.6:ENST00000680202.1:ENST00000679561.1:ENST00000681465.1:ENST00000491439.2:ENST00000681554.1:ENST00000681252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.49116	4.520215	4.54927	0.0643046	0.0207449	0.161669	0.102713
chr10	79181009	79181108	4533167	0	+	0.59596	(0.58,1]	chr10	432438	185	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.49116	4.520215	4.54927	0.0643046	0.0207449	0.161669	0.102713
chr13	113347953	113348053	5753412	0	-	0.68	(0.58,1]	chr13	564102	26	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.49116	4.520215	4.54927	0.0643046	0.0207449	0.161669	0.102713
chr19	1998945	1999043	7307783	0	-	0.632653	(0.58,1]	chr19	753493	11	INTRON	INTRON	BTBD2	ENSG00000133243.10	ENST00000255608.9:ENST00000589200.3:ENST00000590646.5:ENST00000587742.5:ENST00000588395.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.49116	4.520215	4.54927	0.0643046	0.0207449	0.161669	0.102713
chr19	2441815	2441914	7309604	0	-	0.636364	(0.58,1]	chr19	753890	29	INTRON	INTRON	LMNB2	ENSG00000176619.13	ENST00000325327.4	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.49116	4.520215	4.54927	0.0643046	0.0207449	0.161669	0.102713
chr19	34504247	34504346	7244311	0	+	0.585859	(0.58,1]	chr19	741946	41	UTR3	UTR3:EXON_MRNA	WTIP	ENSG00000142279.13	ENST00000590071.7	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.49116	4.520215	4.54927	0.0643046	0.0207449	0.161669	0.102713
chr2	240509955	240510048	1394529	0	-	0.677419	(0.58,1]	chr2	148999	1	INTRON	INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000391988.3	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.49116	4.520215	4.54927	0.0643046	0.0207449	0.161669	0.102713
chr20	25196837	25196920	7450255	0	+	0.60241	(0.58,1]	chr20	775258	2	SS3_PROX	SS3_PROX:INTRON	ENTPD6	ENSG00000197586.13	ENST00000354989.9:ENST00000360031.6:ENST00000376652.9:ENST00000439162.5:ENST00000433417.5:ENST00000417467.5:ENST00000433259.6:ENST00000427553.5:ENST00000435520.5:ENST00000418890.5:ENST00000425813.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.49116	4.520215	4.54927	0.0643046	0.0207449	0.161669	0.102713
chr22	45515147	45515247	7739402	0	+	0.61	(0.58,1]	chr22	811484	113	INTRON	INTRON	FBLN1	ENSG00000077942.19	ENST00000411478.5:ENST00000445110.5:ENST00000455233.5:ENST00000327858.11:ENST00000262722.11:ENST00000402984.7:ENST00000442170.6:ENST00000340923.9:ENST00000439835.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.49116	4.520215	4.54927	0.0643046	0.0207449	0.161669	0.102713
chr7	6179726	6179825	3540673	0	-	0.606061	(0.58,1]	chr7	342127	14	INTRON	INTRON	CYTH3	ENSG00000008256.16	ENST00000396741.3:ENST00000350796.8	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.49116	4.520215	4.54927	0.0643046	0.0207449	0.161669	0.102713
chr1	3891875	3891971	386340	0	-	0.645833	(0.58,1]	chr1	44329	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	C1orf174	ENSG00000198912.12	ENST00000474140.1:ENST00000486765.5:ENST00000361605.4:ENST00000679703.1:ENST00000680054.1:ENST00000680279.1:ENST00000681823.1:ENST00000679946.1:ENST00000680169.1:ENST00000680535.1:ENST00000679929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	71	2	3.82654	4.520155	5.21377	0.0230012	0.00275362	0.102982	0.0285628
chr20	64272042	64272136	7511233	0	+	0.531915	(0.523,0.58]	chr20	783908	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609818.1:ENST00000266078.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	96	2	2.46839	4.52005	6.57171	0.0683019	0.00369199	0.193274	0.0389784
chr6	159712228	159712328	3300588	0	-	0.49	(0.485,0.523]	chr6	319519	190	INTRON	INTRON	SOD2	ENSG00000112096.19	ENST00000546087.5:ENST00000545162.5:ENST00000535561.5:ENST00000537657.5:ENST00000401980.3	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	3.7763	4.520025	5.26375	0.0335928	0.00420211	0.124319	0.0380601
chr7	66663277	66663376	3382037	0	+	0.474747	(0.45,0.485]	chr7	326325	83	INTRON	INTRON	ENSG00000226824	ENSG00000226824.8	ENST00000693151.1:ENST00000656515.2:ENST00000448096.1:ENST00000439360.5:ENST00000657342.1:ENST00000428557.1	lncRNA	lncRNA	lncRNA	lncRNA	1	77	2	3.53579	4.520005	5.50422	0.0257993	0.00804225	0.109555	0.0582806
chr14	30920805	30920905	5950936	0	-	0.35	(0.33,0.36]	chr14	583071	13	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000366206.2:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	297	2	4.12577	4.5196950000000005	4.91362	0.0081886	5.927e-5	0.0607268	0.00185705
chr16	84763687	84763786	6514478	0	+	0.545455	(0.523,0.58]	chr16	646322	2	SS3_PROX	SS3_PROX:INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569038.5:ENST00000570053.1:ENST00000563433.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	113	2	3.77551	4.519415	5.26332	0.0337698	0.00126726	0.124319	0.0168021
chr20	32477715	32477814	7543645	0	-	0.616162	(0.58,1]	chr20	787372	26	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	86	2	3.48889	4.519335	5.54978	0.016972	0.00165911	0.0889149	0.0202545
chr4	23865919	23866019	2209370	0	-	0.42	(0.419,0.45]	chr4	223317	338	INTRON	INTRON	PPARGC1A	ENSG00000109819.9	ENST00000509702.5:ENST00000264867.7:ENST00000613098.4:ENST00000506055.5:ENST00000513205.5:ENST00000509642.5:ENST00000617484.4:ENST00000612355.1:ENST00000508380.1:ENST00000512169.1:ENST00000507342.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	81	2	3.59354	4.519005	5.44447	0.0364384	0.00820853	0.128173	0.0592025
chr6	11043627	11043727	3093179	0	-	0.66	(0.58,1]	chr6	300390	325	INTRON	INTRON	ELOVL2	ENSG00000197977.4	ENST00000354666.4	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.44157	4.51802	5.59447	0.0117666	0.00760198	0.0737098	0.0561937
chr22	28444672	28444772	7779477	0	-	0.47	(0.45,0.485]	chr22	815741	17	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.32491	4.5180050000000005	4.7111	0.0781398	0.0418883	0.175203	0.149021
chr9	136042644	136042744	4432503	0	-	0.48	(0.45,0.485]	chr9	423642	233	INTRON	INTRON	NACC2	ENSG00000148411.8	ENST00000277554.4:ENST00000371753.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.32491	4.5180050000000005	4.7111	0.0781398	0.0418883	0.175203	0.149021
chr15	101458718	101458817	6364146	0	-	0.484848	(0.45,0.485]	chr15	627290	1	INTRON	INTRON	PCSK6	ENSG00000140479.18	ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000611967.4:ENST00000615296.4:ENST00000559417.2:ENST00000331826.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	77	2	3.38668	4.51795	5.64922	0.020599	0.0113463	0.0982852	0.0719708
chr1	17671987	17672087	54931	0	+	0.58	(0.523,0.58]	chr1	5603	70	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	36	2	4.13061	4.517805	4.905	0.0563605	0.0533354	0.167062	0.154188
chr1	150010247	150010347	585369	0	-	0.55	(0.523,0.58]	chr1	67590	4	SS5_PROX	SS5_PROX:INTRON	OTUD7B	ENSG00000264522.6	ENST00000581312.6:ENST00000417191.2	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.13061	4.517805	4.905	0.0563605	0.0533354	0.167062	0.154188
chr12	122097861	122097961	5343567	0	+	0.53	(0.523,0.58]	chr12	521864	182	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.13061	4.517805	4.905	0.0563605	0.0533354	0.167062	0.154188
chr16	85393234	85393334	6517003	0	+	0.54	(0.523,0.58]	chr16	646391	339	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.13061	4.517805	4.905	0.0563605	0.0533354	0.167062	0.154188
chr9	133850898	133850998	4428907	0	-	0.58	(0.523,0.58]	chr9	423304	162	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.13061	4.517805	4.905	0.0563605	0.0533354	0.167062	0.154188
chr11	65444441	65444541	4871786	0	+	0.65	(0.58,1]	chr11	468177	218	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	83	6079	2	4.34723	4.517505	4.68778	1.53148e-4	1.30214e-6	0.00689544	1.24751e-4
chr9	93618669	93618769	4184076	0	+	0.4	(0.39,0.419]	chr9	397705	414	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	1	100	2	2.62127	4.517355	6.41344	0.0923527	4.94825e-4	0.188571	0.00865935
chr10	102649877	102649977	4576523	0	+	0.66	(0.58,1]	chr10	437284	2	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1:ENST00000487927.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	180	2	4.49148	4.51729	4.5431	0.00197916	3.89116e-4	0.0279351	0.00732219
chr3	105861532	105861631	1862902	0	-	0.40404	(0.39,0.419]	chr3	189859	75	INTRON	INTRON	CBLB	ENSG00000114423.23	ENST00000645759.1:ENST00000394030.8:ENST00000646499.1:ENST00000645425.1:ENST00000646825.1:ENST00000643322.1:ENST00000403724.5:ENST00000405772.5:ENST00000447441.6:ENST00000438603.6:ENST00000443752.2:ENST00000643192.1:ENST00000642907.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	80	2	3.26675	4.5171600000000005	5.76757	0.0204917	0.01622	0.0979776	0.0902823
chr2	148652944	148653044	918446	0	+	0.28	[0,0.29]	chr2	102687	70	INTRON	INTRON	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000409654.5:ENST00000397424.2	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	4.09132	4.516775	4.94223	0.0379936	0.0016395	0.131324	0.0201957
chr21	44853616	44853715	7678368	0	-	0.606061	(0.58,1]	chr21	802742	16	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000397886.3	protein_coding	protein_coding	protein_coding	protein_coding	3	292	2	4.33402	4.5167649999999995	4.69951	6.31529e-4	5.01878e-4	0.0129939	0.0102754
chr1	149057749	149057835	583583	0	-	0.5	(0.485,0.523]	chr1	67284	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF9	ENSG00000269713.8	ENST00000615421.4:ENST00000584027.9:ENST00000613595.4:ENST00000621074.5:ENST00000621645.4:ENST00000610300.4	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.12717	4.5162949999999995	4.90542	0.0561086	0.0545434	0.167824	0.154188
chr11	59769814	59769914	4860006	0	+	0.49	(0.485,0.523]	chr11	465484	138	INTRON	INTRON	STX3	ENSG00000166900.17	ENST00000641815.1:ENST00000337979.9:ENST00000533637.5:ENST00000633708.1:ENST00000529177.5:ENST00000530498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.12717	4.5162949999999995	4.90542	0.0561086	0.0545434	0.167824	0.154188
chr16	85512484	85512584	6518196	0	+	0.5	(0.485,0.523]	chr16	646391	1532	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.12717	4.5162949999999995	4.90542	0.0561086	0.0545434	0.167824	0.154188
chr17	32857606	32857706	6887154	0	-	0.51	(0.485,0.523]	chr17	698998	274	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000579584.5:ENST00000583621.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.12717	4.5162949999999995	4.90542	0.0561086	0.0545434	0.167824	0.154188
chr4	2878903	2879003	2000899	0	+	0.5	(0.485,0.523]	chr4	204050	24	INTRON	INTRON	ADD1	ENSG00000087274.19	ENST00000683351.1:ENST00000398125.5:ENST00000264758.11:ENST00000508684.5:ENST00000510101.5:ENST00000511797.5:ENST00000513328.6:ENST00000509039.5:ENST00000508277.5:ENST00000503455.6:ENST00000355842.7:ENST00000651918.1:ENST00000503169.5:ENST00000398129.5:ENST00000398123.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.12717	4.5162949999999995	4.90542	0.0561086	0.0545434	0.167824	0.154188
chrX	1447978	1448077	7965973	0	-	0.494949	(0.485,0.523]	chrX	834314	53	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9:ENST00000474865.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.12717	4.5162949999999995	4.90542	0.0561086	0.0545434	0.167824	0.154188
chr21	42849499	42849590	7675467	0	-	0.615385	(0.58,1]	chr21	802288	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	197	2	3.43525	4.516265	5.59728	0.0187495	9.76731e-6	0.0936297	5.04733e-4
chr16	85389436	85389536	6516965	0	+	0.44	(0.419,0.45]	chr16	646391	301	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	2.7072600000000002	4.51624	6.32522	0.0496323	0.00956261	0.160725	0.0658012
chr7	131469166	131469264	3484866	0	+	0.520408	(0.485,0.523]	chr7	336584	24	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5:ENST00000498778.5:ENST00000497746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	76	2	3.68058	4.516125000000001	5.35167	0.0294163	0.0053378	0.116079	0.0447225
chr2	86775381	86775479	846407	0	+	0.418367	(0.39,0.419]	chr2	95512	21	UTR3	UTR3:EXON_MRNA	RMND5A	ENSG00000153561.13	ENST00000283632.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.09132	4.51596	4.9406	0.0689553	0.0658437	0.193274	0.162385
chr21	37073873	37073973	7617416	0	+	0.62	(0.58,1]	chr21	795679	4	SS5_PROX	SS5_PROX:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	83	2	3.06331	4.515725	5.96814	0.036259	5.06433e-4	0.127941	0.00881473
chr10	34405013	34405113	4667700	0	-	0.53	(0.523,0.58]	chr10	445507	27	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6:ENST00000544292.5	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	3.27377	4.515594999999999	5.75742	0.0155135	0.0137592	0.0849828	0.0814923
chr20	4986611	4986711	7518427	0	-	0.39	(0.36,0.39]	chr20	784906	153	INTRON	INTRON	SLC23A2	ENSG00000089057.15	ENST00000379333.5:ENST00000338244.6:ENST00000468355.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	222	2	4.48343	4.51555	4.54767	0.0048224	7.11752e-4	0.0453395	0.0112082
chr12	132541728	132541827	5353033	0	+	0.565657	(0.523,0.58]	chr12	523670	134	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.50593	4.515415	4.5249	0.094303	0.0266135	0.188571	0.118113
chr17	17685449	17685549	6688889	0	+	0.57	(0.523,0.58]	chr17	671338	5	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.50593	4.515415	4.5249	0.094303	0.0266135	0.188571	0.118113
chr22	42648123	42648219	7821313	0	-	0.5625	(0.523,0.58]	chr22	820391	12	INTRON	INTRON	CYB5R3	ENSG00000100243.22	ENST00000693367.1:ENST00000352397.10:ENST00000361740.9:ENST00000692152.1:ENST00000693363.1:ENST00000689795.1:ENST00000686523.1:ENST00000407332.6:ENST00000687183.1:ENST00000691295.1:ENST00000690835.1:ENST00000689195.1:ENST00000688244.1:ENST00000690993.1:ENST00000689239.1:ENST00000692344.1:ENST00000686129.1:ENST00000466276.2:ENST00000693716.1:ENST00000688004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.50593	4.515415	4.5249	0.094303	0.0266135	0.188571	0.118113
chr4	51851560	51851660	2041548	0	+	0.56	(0.523,0.58]	chr4	208598	28	INTRON	INTRON	DCUN1D4	ENSG00000109184.15	ENST00000509376.5:ENST00000511675.5:ENST00000381441.7:ENST00000506673.5:ENST00000504113.5:ENST00000502930.5:ENST00000334635.10:ENST00000507741.5:ENST00000513800.5:ENST00000477560.5:ENST00000509068.5:ENST00000451288.6:ENST00000505403.5:ENST00000504661.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.50593	4.515415	4.5249	0.094303	0.0266135	0.188571	0.118113
chr6	154879972	154880072	3045604	0	+	0.57	(0.523,0.58]	chr6	296754	157	INTRON	INTRON	TIAM2	ENSG00000146426.19	ENST00000461783.7:ENST00000535064.1:ENST00000460692.2:ENST00000449545.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.50593	4.515415	4.5249	0.094303	0.0266135	0.188571	0.118113
chr19	10087876	10087972	7202777	0	+	0.46875	(0.45,0.485]	chr19	734605	7	EXON_MRNA	EXON_MRNA:INTRON	SHFL	ENSG00000130813.18	ENST00000592551.5:ENST00000585919.5:ENST00000253110.16:ENST00000591813.5:ENST00000587710.5:ENST00000590378.5:ENST00000397881.7:ENST00000586889.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	77	2	3.60494	4.5154049999999994	5.42587	0.0290571	0.00682726	0.116079	0.0525149
chrX	48805971	48806070	7879247	0	+	0.515152	(0.485,0.523]	chrX	826185	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HDAC6	ENSG00000094631.21	ENST00000376643.6:ENST00000469223.5:ENST00000376610.6:ENST00000483656.5:ENST00000462730.5:ENST00000376619.6:ENST00000477528.5:ENST00000334136.11:ENST00000476625.5:ENST00000646703.1:ENST00000477561.5:ENST00000643659.1:ENST00000643374.1:ENST00000644068.1:ENST00000643934.1:ENST00000443563.5:ENST00000440653.1:ENST00000468949.1:ENST00000647398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	97	2	3.54037	4.515015	5.48966	0.0206875	0.0033837199999999998	0.0985914	0.0328791
chr4	3366986	3367085	2005106	0	+	0.666667	(0.58,1]	chr4	204663	236	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	112	2	2.78749	4.51497	6.24245	0.00786471	0.00334087	0.0576321	0.0368376
chr16	72073491	72073591	6491300	0	+	0.5	(0.485,0.523]	chr16	645095	2	SS3_PROX	SS3_PROX:INTRON	HPR	ENSG00000261701.9	ENST00000649683.1:ENST00000540303.7:ENST00000566168.1:ENST00000561690.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	128	2	3.2715	4.51467	5.75784	0.0154142	0.00280805	0.0849828	0.0290323
chr20	53502010	53502110	7581431	0	-	0.27	[0,0.29]	chr20	792011	401	INTRON	INTRON	ENSG00000259723	ENSG00000259723.1	ENST00000558738.1	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	4.14609	4.514475	4.88286	0.0482299	0.041613	0.159496	0.136301
chr19	16837103	16837202	7217737	0	+	0.575758	(0.523,0.58]	chr19	737614	51	INTRON	INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000596802.5	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	3.03457	4.51444	5.99431	0.0231444	0.0104033	0.109883	0.0686837
chr6	147803029	147803129	3030199	0	+	0.24	[0,0.29]	chr6	295875	656	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	1	74	2	3.77403	4.514385	5.25474	0.02298	0.00383316	0.102982	0.0358643
chr13	51931555	51931654	5716351	0	-	0.373737	(0.36,0.39]	chr13	560875	6	INTRON	INTRON	ATP7B	ENSG00000123191.16	ENST00000634519.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	35	2	4.39677	4.514235	4.6317	0.0950937	0.0422707	0.189021	0.149195
chr16	50634679	50634778	6452281	0	+	0.373737	(0.36,0.39]	chr16	639945	10	UTR3	UTR3:EXON_MRNA	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.39677	4.514235	4.6317	0.0950937	0.0422707	0.189021	0.149195
chr17	29767612	29767712	6879113	0	-	0.37	(0.36,0.39]	chr17	698253	63	INTRON	INTRON	SSH2	ENSG00000141298.19	ENST00000540801.6:ENST00000269033.7:ENST00000394848.5:ENST00000579040.5:ENST00000577483.1:ENST00000592397.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.39677	4.514235	4.6317	0.0950937	0.0422707	0.189021	0.149195
chr2	11305423	11305523	1089009	0	-	0.5	(0.485,0.523]	chr2	118747	173	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	124	2	2.53144	4.514225	6.49701	0.0180879	0.00420849	0.0954351	0.0421454
chr10	103703106	103703205	4757131	0	-	0.616162	(0.58,1]	chr10	454791	96	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	70	2	3.39676	4.51397	5.63118	0.0109983	0.0085026	0.0708586	0.0608246
chr15	25078411	25078508	6064674	0	+	0.494845	(0.485,0.523]	chr15	595533	10	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	SNHG14	ENSG00000224078.15	ENST00000640631.2:ENST00000662834.1:ENST00000667393.1:ENST00000669673.1:ENST00000668750.1:ENST00000664545.1:ENST00000656510.1:ENST00000654223.1:ENST00000549804.7:ENST00000660717.1:ENST00000661253.1:ENST00000670542.1:ENST00000664256.1:ENST00000655153.1:ENST00000666289.1:ENST00000657237.1:ENST00000670394.1:ENST00000667925.1:ENST00000653407.1:ENST00000671374.1:ENST00000668953.1:ENST00000665819.1:ENST00000666606.1:ENST00000660542.1:ENST00000667531.1:ENST00000654902.1:ENST00000656600.1:ENST00000662370.1:ENST00000671491.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.50634	4.51388	4.52142	0.0939553	0.0273555	0.188571	0.119337
chr15	85567951	85568051	6178087	0	+	0.51	(0.485,0.523]	chr15	607557	121	INTRON	INTRON	AKAP13	ENSG00000170776.22	ENST00000559362.5:ENST00000394518.7:ENST00000361243.6:ENST00000558166.2:ENST00000558811.2	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.50634	4.51388	4.52142	0.0939553	0.0273555	0.188571	0.119337
chr16	1734684	1734784	6371285	0	+	0.52	(0.485,0.523]	chr16	628848	3	PRIMIRNA	PRIMIRNA:INTRON	MAPK8IP3:MIR3177	ENSG00000138834.15:ENSG00000265820.1	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1:ENST00000578255.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:processed_transcript:primary_miRNA	0	34	2	4.50634	4.51388	4.52142	0.0939553	0.0273555	0.188571	0.119337
chr17	27471804	27471904	6702504	0	+	0.51	(0.485,0.523]	chr17	672842	146	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000579309.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.50634	4.51388	4.52142	0.0939553	0.0273555	0.188571	0.119337
chr17	57438794	57438894	6761598	0	+	0.49	(0.485,0.523]	chr17	682129	63	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.50634	4.51388	4.52142	0.0939553	0.0273555	0.188571	0.119337
chr2	65388881	65388981	1171744	0	-	0.52	(0.485,0.523]	chr2	127582	83	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.50634	4.51388	4.52142	0.0939553	0.0273555	0.188571	0.119337
chr2	134370903	134371003	897951	0	+	0.52	(0.485,0.523]	chr2	101263	81	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.50634	4.51388	4.52142	0.0939553	0.0273555	0.188571	0.119337
chr3	49031323	49031413	1770690	0	-	0.522222	(0.485,0.523]	chr3	183145	3	INTRON	INTRON	QRICH1	ENSG00000198218.11	ENST00000395443.7:ENST00000498392.1:ENST00000357496.6:ENST00000424300.5:ENST00000489642.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.50634	4.51388	4.52142	0.0939553	0.0273555	0.188571	0.119337
chr7	47374017	47374117	3587532	0	-	0.5	(0.485,0.523]	chr7	346036	40	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.50634	4.51388	4.52142	0.0939553	0.0273555	0.188571	0.119337
chr15	25434865	25434964	6205970	0	-	0.353535	(0.33,0.36]	chr15	610832	74	INTRON	INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000625681.2:ENST00000627018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	94	2	2.95996	4.51342	6.06688	0.0551496	0.00105663	0.153649	0.0147548
chr1	111648153	111648253	207196	0	+	0.4	(0.39,0.419]	chr1	22862	202	INTRON	INTRON	RAP1A	ENSG00000116473.15	ENST00000356415.5:ENST00000687939.1:ENST00000369709.4:ENST00000494982.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.39622	4.513294999999999	4.63037	0.0963077	0.042449	0.189169	0.149195
chr1	243438451	243438551	370018	0	+	0.41	(0.39,0.419]	chr1	41877	115	INTRON	INTRON	SDCCAG8	ENSG00000054282.16	ENST00000366541.8:ENST00000435549.1:ENST00000463042.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.39622	4.513294999999999	4.63037	0.0963077	0.042449	0.189169	0.149195
chr10	114963892	114963991	4592604	0	+	0.414141	(0.39,0.419]	chr10	438984	37	INTRON	INTRON	TRUB1	ENSG00000165832.6	ENST00000298746.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.39622	4.513294999999999	4.63037	0.0963077	0.042449	0.189169	0.149195
chr19	10794245	10794343	7204680	0	+	0.408163	(0.39,0.419]	chr19	735054	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DNM2	ENSG00000079805.19	ENST00000683738.1:ENST00000682285.1:ENST00000682524.1:ENST00000355667.11:ENST00000389253.9:ENST00000585892.5:ENST00000359692.10:ENST00000408974.8:ENST00000591701.5:ENST00000587830.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.39622	4.513294999999999	4.63037	0.0963077	0.042449	0.189169	0.149195
chr7	40676857	40676957	3359291	0	+	0.4	(0.39,0.419]	chr7	324373	1775	INTRON	INTRON	SUGCT	ENSG00000175600.16	ENST00000335693.9:ENST00000401647.7:ENST00000628514.3	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.39622	4.513294999999999	4.63037	0.0963077	0.042449	0.189169	0.149195
chr19	33806362	33806462	7241208	0	+	0.57	(0.523,0.58]	chr19	741480	1	SS3_PROX	SS3_PROX:INTRON	KCTD15	ENSG00000153885.15	ENST00000587658.5:ENST00000587559.5:ENST00000588637.5:ENST00000284006.10:ENST00000589786.5:ENST00000683859.1:ENST00000588881.5:ENST00000430256.3	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	3.90605	4.513275	5.1205	0.0416463	0.00295607	0.136301	0.0300958
chr18	74812523	74812623	7091402	0	+	0.39	(0.36,0.39]	chr18	722438	80	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.20082	4.51327	4.82572	0.0751666	0.0581116	0.175217	0.172839
chr20	33643846	33643946	7459103	0	+	0.38	(0.36,0.39]	chr20	776537	1	SS3_PROX	SS3_PROX:INTRON	CBFA2T2	ENSG00000078699.22	ENST00000342704.11:ENST00000375279.6:ENST00000346541.7:ENST00000397800.5:ENST00000492345.5:ENST00000359606.3:ENST00000543126.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.20082	4.51327	4.82572	0.0751666	0.0581116	0.175217	0.172839
chr1	17670289	17670389	54914	0	+	0.55	(0.523,0.58]	chr1	5603	53	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	81	2	2.92656	4.513085	6.09961	0.0289226	0.00866655	0.124	0.0623824
chr19	943616	943715	7185282	0	+	0.626263	(0.58,1]	chr19	730741	105	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	290	2	3.73665	4.513015	5.28938	0.00272902	2.84381e-5	0.0331786	0.00108203
chr6	98921103	98921202	3207946	0	-	0.393939	(0.39,0.419]	chr6	311438	30	INTRON	INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	1	98	2	3.25813	4.512955	5.76778	0.0377191	0.0025422	0.131324	0.0271978
chr6	158766913	158767013	3299321	0	-	0.6	(0.58,1]	chr6	319365	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	EZR	ENSG00000092820.19	ENST00000337147.11:ENST00000367075.4	protein_coding	protein_coding	protein_coding	protein_coding	7	170	2	2.60512	4.51295	6.42078	0.00497227	0.00230938	0.0426602	0.0302623
chr20	6025870	6025970	7425878	0	+	0.34	(0.33,0.36]	chr20	773616	3	SS3_PROX	SS3_PROX:INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	78	2	3.34409	4.51259	5.68109	0.0201622	0.0131368	0.0973366	0.0788915
chr9	75090225	75090325	4167613	0	+	0.41	(0.39,0.419]	chr9	396108	11	INTRON	INTRON	OSTF1	ENSG00000134996.12	ENST00000346234.7	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.20027	4.51233	4.82439	0.0762206	0.0583327	0.175217	0.174484
chr16	50597898	50597998	6451906	0	+	0.55	(0.523,0.58]	chr16	639902	393	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	154	2	2.50835	4.5120450000000005	6.51574	0.0112199	0.00409625	0.071709	0.0413652
chr6	158040730	158040829	3059905	0	+	0.565657	(0.523,0.58]	chr6	297390	67	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	125	2	2.71198	4.51199	6.312	0.0408931	3.69994e-4	0.136191	0.00704866
chr16	84735380	84735478	6514183	0	+	0.5	(0.485,0.523]	chr16	646283	15	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	101	2	3.11352	4.51196	5.9104	0.0119344	0.00747179	0.0741726	0.0555092
chr1	61119226	61119326	146472	0	+	0.48	(0.45,0.485]	chr1	17144	70	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	93	2	3.00299	4.51184	6.02069	0.0512051	0.00101549	0.148503	0.0143256
chr16	11007701	11007801	6385940	0	+	0.47	(0.45,0.485]	chr16	631680	40	INTRON	INTRON	CLEC16A	ENSG00000038532.16	ENST00000409790.6:ENST00000409552.4:ENST00000494853.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	93	2	3.00299	4.51184	6.02069	0.0512051	0.00101549	0.148503	0.0143256
chr10	119360250	119360350	4594850	0	+	0.54	(0.523,0.58]	chr10	439173	333	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.23973	4.511785	4.78384	0.0663135	0.0444247	0.162385	0.153511
chr11	69083458	69083558	4885496	0	+	0.57	(0.523,0.58]	chr11	471022	3	PRIMIRNA	PRIMIRNA	MIR3164	ENSG00000265539.1	ENST00000581178.1	miRNA	primary_miRNA	miRNA	primary_miRNA	0	35	2	4.23973	4.511785	4.78384	0.0663135	0.0444247	0.162385	0.153511
chr13	113336159	113336259	5753292	0	-	0.58	(0.523,0.58]	chr13	564094	97	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.23973	4.511785	4.78384	0.0663135	0.0444247	0.162385	0.153511
chr16	85584734	85584834	6518920	0	+	0.54	(0.523,0.58]	chr16	646396	280	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.23973	4.511785	4.78384	0.0663135	0.0444247	0.162385	0.153511
chr17	39672242	39672329	6898421	0	-	0.574713	(0.523,0.58]	chr17	700784	3	CDS	CDS:UTR3:EXON_MRNA	PGAP3	ENSG00000161395.14	ENST00000579146.5:ENST00000300658.9:ENST00000378011.8:ENST00000309862.10:ENST00000619169.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.23973	4.511785	4.78384	0.0663135	0.0444247	0.162385	0.153511
chr17	77299977	77300076	6803350	0	+	0.555556	(0.523,0.58]	chr17	686716	47	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.23973	4.511785	4.78384	0.0663135	0.0444247	0.162385	0.153511
chr19	38664341	38664441	7258007	0	+	0.54	(0.523,0.58]	chr19	743980	157	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.23973	4.511785	4.78384	0.0663135	0.0444247	0.162385	0.153511
chr20	58697784	58697883	7498661	0	+	0.525253	(0.523,0.58]	chr20	782002	28	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	35	2	4.23973	4.511785	4.78384	0.0663135	0.0444247	0.162385	0.153511
chr21	43726459	43726557	7623858	0	+	0.561224	(0.523,0.58]	chr21	796696	27	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000438837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.23973	4.511785	4.78384	0.0663135	0.0444247	0.162385	0.153511
chr3	9468575	9468674	1402844	0	+	0.50505	(0.485,0.523]	chr3	150230	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000406341.5:ENST00000670063.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000466242.5:ENST00000682236.1:ENST00000421188.1:ENST00000687014.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	554	2	4.31151	4.511655	4.7118	9.76421e-4	6.21818e-5	0.0187475	0.00192539
chr16	84746670	84746770	6514298	0	+	0.41	(0.39,0.419]	chr16	646296	6	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000563892.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	228	2	3.68026	4.51161	5.34296	0.0194541	7.57107e-5	0.0955413	0.00223036
chr17	61398536	61398636	6939785	0	-	0.61	(0.58,1]	chr17	707564	1	SS5_PROX	SS5_PROX:INTRON	TBX2-AS1	ENSG00000267280.6	ENST00000591313.6:ENST00000590421.1:ENST00000592009.1:ENST00000589814.5	lncRNA	lncRNA	lncRNA	lncRNA	1	74	2	4.0743	4.51156	4.94882	0.0354433	0.00136577	0.127188	0.0176851
chr20	36493385	36493485	7470934	0	+	0.54	(0.523,0.58]	chr20	777864	2	SS5_PROX	SS5_PROX:INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10:ENST00000373907.6:ENST00000475894.5:ENST00000482872.5:ENST00000495241.5:ENST00000491207.5:ENST00000482037.5:ENST00000340491.8:ENST00000479220.5:ENST00000489701.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	75	2	3.4003	4.51144	5.62258	0.0193313	0.0103016	0.0954446	0.0678983
chr10	79222972	79223072	4533591	0	+	0.61	(0.58,1]	chr10	432457	63	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	3.25332	4.51133	5.76934	0.0120565	0.00849371	0.0754623	0.0617717
chr3	65420734	65420834	1809657	0	-	0.33	(0.29,0.33]	chr3	187193	189	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.2311	4.511044999999999	4.79099	0.061706	0.0471437	0.158854	0.156915
chr1	149514612	149514700	238716	0	+	0.488636	(0.485,0.523]	chr1	26684	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF19	ENSG00000271383.8	ENST00000651566.2:ENST00000611931.4:ENST00000612881.4:ENST00000369227.7:ENST00000426482.3	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.23628	4.51027	4.78426	0.0660335	0.045492200000000003	0.162385	0.154539
chr2	127731925	127732024	1266923	0	-	0.50505	(0.485,0.523]	chr2	136569	48	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.23628	4.51027	4.78426	0.0660335	0.045492200000000003	0.162385	0.154539
chr8	6540665	6540765	3745970	0	+	0.52	(0.485,0.523]	chr8	360211	403	INTRON	INTRON	MCPH1	ENSG00000147316.15	ENST00000690826.1:ENST00000692938.1:ENST00000693231.1:ENST00000688388.1:ENST00000344683.10:ENST00000690708.1:ENST00000689348.1:ENST00000690159.1:ENST00000689736.1:ENST00000689633.1:ENST00000691435.1:ENST00000692836.1:ENST00000687720.1:ENST00000688101.1:ENST00000689148.1:ENST00000687324.1:ENST00000521175.2:ENST00000519221.6:ENST00000521129.2:ENST00000687413.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	35	2	4.23628	4.51027	4.78426	0.0660335	0.045492200000000003	0.162385	0.154539
chr17	7108272	7108361	6847714	0	-	0.662921	(0.58,1]	chr17	693414	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	518	2	4.38176	4.5101700000000005	4.63858	6.30952e-4	1.38808e-5	0.0147478	6.45948e-4
chr10	103698114	103698214	4757081	0	-	0.61	(0.58,1]	chr10	454791	46	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.3962	4.510115000000001	4.62403	0.0578275	0.0250928	0.154343	0.114418
chr11	72758117	72758206	5070519	0	-	0.58427	(0.58,1]	chr11	493487	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARAP1:STARD10	ENSG00000186635.15:ENSG00000214530.10	ENST00000359373.9:ENST00000334805.11:ENST00000543304.5:ENST00000537351.5:ENST00000538536.5:ENST00000538437.5:ENST00000545082.5:ENST00000544767.5:ENST00000537947.5:ENST00000536728.5:ENST00000542989.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.3962	4.510115000000001	4.62403	0.0578275	0.0250928	0.154343	0.114418
chr19	49659833	49659933	7397286	0	-	0.61	(0.58,1]	chr19	769291	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	IRF3	ENSG00000126456.16	ENST00000599680.1:ENST00000377135.8:ENST00000377139.8:ENST00000601291.5:ENST00000596822.5:ENST00000600911.5:ENST00000309877.11:ENST00000597198.5:ENST00000597636.5:ENST00000596644.5:ENST00000599144.5:ENST00000593922.5:ENST00000596765.5:ENST00000599223.5:ENST00000600022.5:ENST00000598808.5:ENST00000596756.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.3962	4.510115000000001	4.62403	0.0578275	0.0250928	0.154343	0.114418
chr5	1326014	1326094	2609073	0	-	0.6	(0.58,1]	chr5	259716	1	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000506641.5:ENST00000507195.5:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.3962	4.510115000000001	4.62403	0.0578275	0.0250928	0.154343	0.114418
chr9	123407582	123407682	4396636	0	-	0.59	(0.58,1]	chr9	419589	37	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.3962	4.510115000000001	4.62403	0.0578275	0.0250928	0.154343	0.114418
chr9	124490380	124490480	4402626	0	-	0.7	(0.58,1]	chr9	419805	70	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.3962	4.510115000000001	4.62403	0.0578275	0.0250928	0.154343	0.114418
chr14	23513626	23513718	5757089	0	+	0.652174	(0.58,1]	chr14	564961	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ZFHX2-AS1	ENSG00000157306.14	ENST00000556354.5:ENST00000556613.1:ENST00000553985.1:ENST00000557568.1:ENST00000554403.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	86	2	3.51497	4.50997	5.50497	0.0161632	0.00187297	0.0872435	0.0219434
chr14	89271052	89271152	6026809	0	-	0.54	(0.523,0.58]	chr14	591436	66	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	278	2	4.01591	4.50992	5.00393	0.00134638	6.36322e-4	0.0224436	0.0103364
chr9	134335442	134335542	4260777	0	+	0.61	(0.58,1]	chr9	406311	84	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	73	2	3.09402	4.50965	5.92528	0.0174733	0.0062948	0.0928044	0.0523832
chr1	52913349	52913394	485562	0	-	0.377778	(0.36,0.39]	chr1	57720	1	INTRON	INTRON	ECHDC2	ENSG00000121310.17	ENST00000536120.5:ENST00000371522.9:ENST00000460612.5:ENST00000371520.5:ENST00000358358.9:ENST00000476477.6:ENST00000479593.5:ENST00000467988.2:ENST00000487851.5:ENST00000488268.5:ENST00000544365.5:ENST00000495920.5:ENST00000544531.5:ENST00000480312.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	79	2	3.52669	4.509465	5.49224	0.0304242	0.00914333	0.11845	0.063297
chr1	161214272	161214352	253768	0	+	0.4375	(0.419,0.45]	chr1	30238	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NDUFS2	ENSG00000158864.13	ENST00000677550.1:ENST00000676600.1:ENST00000676653.1:ENST00000678507.1:ENST00000678492.1:ENST00000677846.1:ENST00000677807.1:ENST00000677809.1:ENST00000678966.1:ENST00000678911.1:ENST00000678605.1:ENST00000677350.1:ENST00000677081.1:ENST00000679282.1:ENST00000677925.1:ENST00000676535.1:ENST00000677547.1:ENST00000678613.1:ENST00000677231.1:ENST00000677613.1:ENST00000677138.1:ENST00000677457.1:ENST00000678052.1:ENST00000677178.1:ENST00000679215.1:ENST00000678793.1:ENST00000679064.1:ENST00000677383.1:ENST00000677579.1:ENST00000679176.1:ENST00000367993.7:ENST00000676991.1:ENST00000678130.1:ENST00000496553.6:ENST00000467295.6:ENST00000392179.5:ENST00000678511.1:ENST00000677453.1:ENST00000677577.1:ENST00000678850.1:ENST00000677653.1:ENST00000678783.1:ENST00000676871.1:ENST00000677050.1:ENST00000676726.1:ENST00000677916.1:ENST00000677495.1:ENST00000678484.1:ENST00000679239.1:ENST00000677657.1:ENST00000493849.6:ENST00000676583.1:ENST00000678328.1:ENST00000677736.1:ENST00000677045.1:ENST00000677063.1:ENST00000678982.1:ENST00000677471.1:ENST00000677948.1:ENST00000677336.1:ENST00000677643.1:ENST00000678648.1:ENST00000677358.1:ENST00000677089.1:ENST00000480762.6:ENST00000678532.1:ENST00000677745.1:ENST00000678880.1:ENST00000679169.1:ENST00000676972.1:ENST00000678068.1:ENST00000676795.1:ENST00000678559.1:ENST00000677103.1:ENST00000679142.1:ENST00000676770.1:ENST00000677033.1:ENST00000679071.1:ENST00000678356.1:ENST00000465923.6:ENST00000483804.6:ENST00000468828.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	388	2	3.88833	4.509345	5.13036	0.00502624	1.55264e-4	0.0464858	0.00377804
chr4	151119791	151119890	2350448	0	-	0.434343	(0.419,0.45]	chr4	234974	163	INTRON	INTRON	SH3D19	ENSG00000109686.19	ENST00000604922.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	98	2	3.03039	4.50922	5.98805	0.0550674	0.00164584	0.153454	0.0202325
chr16	8683850	8683950	6381228	0	+	0.45	(0.419,0.45]	chr16	631147	4	INTRON	INTRON	ABAT	ENSG00000183044.12	ENST00000564714.5:ENST00000268251.13:ENST00000563992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	502	2	4.06927	4.509175000000001	4.94908	0.00522865	3.48017e-5	0.0476414	0.00126017
chr2	239338291	239338391	1392093	0	-	0.58	(0.523,0.58]	chr2	148752	138	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	76	2	3.229	4.50912	5.78924	0.0152072	0.0147166	0.0861813	0.0826843
chr11	70798042	70798142	5062262	0	-	0.49	(0.485,0.523]	chr11	492702	2	SS5_PROX	SS5_PROX:INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	75	2	3.46766	4.5091	5.55054	0.0215787	0.0089247	0.100612	0.0620271
chr19	35004922	35005022	7244909	0	+	0.6	(0.58,1]	chr19	742073	17	INTRON	INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	99	2	3.99446	4.5088	5.02314	0.00638322	0.0063152	0.0524685	0.0501889
chr20	36313904	36314004	7469126	0	+	0.54	(0.523,0.58]	chr20	777805	70	INTRON	INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.62427	4.50877	5.39327	0.0277354	0.0060311	0.112851	0.0484641
chr4	26360962	26361060	2023421	0	+	0.397959	(0.39,0.419]	chr4	206772	8	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5:ENST00000515573.5:ENST00000689192.1:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2:ENST00000511546.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	117	2	2.37891	4.508745	6.63858	0.042598	0.00489861	0.149691	0.0457614
chr1	86950285	86950385	176501	0	+	0.39	(0.36,0.39]	chr1	19293	341	INTRON	INTRON	HS2ST1	ENSG00000153936.18	ENST00000370550.10:ENST00000370551.8:ENST00000687893.1:ENST00000693745.1:ENST00000689904.1:ENST00000690674.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	80	2	3.68627	4.508665	5.33106	0.0383628	0.00632798	0.131324	0.0501889
chr4	101317111	101317211	2292850	0	-	0.45	(0.419,0.45]	chr4	230565	759	INTRON	INTRON	PPP3CA	ENSG00000138814.17	ENST00000512215.5:ENST00000394854.8:ENST00000323055.10:ENST00000394853.8:ENST00000507176.5:ENST00000529324.5:ENST00000525819.1	protein_coding	protein_coding	protein_coding	protein_coding	1	84	2	2.9727	4.508555	6.04441	0.0303302	0.0149622	0.126768	0.0835955
chr1	1027538	1027638	990	0	+	0.57	(0.523,0.58]	chr1	166	47	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.43597	4.508275	4.58058	0.0860403	0.0313935	0.181766	0.127822
chr11	70536230	70536330	5059635	0	-	0.57	(0.523,0.58]	chr11	492663	329	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.43597	4.508275	4.58058	0.0860403	0.0313935	0.181766	0.127822
chr13	75402987	75403087	5727214	0	-	0.55	(0.523,0.58]	chr13	561722	258	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.43597	4.508275	4.58058	0.0860403	0.0313935	0.181766	0.127822
chr16	11075220	11075320	6386629	0	+	0.54	(0.523,0.58]	chr16	631735	138	INTRON	INTRON	CLEC16A	ENSG00000038532.16	ENST00000409790.6:ENST00000409552.4:ENST00000465491.5:ENST00000646363.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.43597	4.508275	4.58058	0.0860403	0.0313935	0.181766	0.127822
chr21	38814981	38815081	7620698	0	+	0.53	(0.523,0.58]	chr21	796167	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ETS2	ENSG00000157557.13	ENST00000360214.8:ENST00000667466.1:ENST00000360938.8:ENST00000666778.1:ENST00000653642.1:ENST00000662305.1:ENST00000456966.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.43597	4.508275	4.58058	0.0860403	0.0313935	0.181766	0.127822
chr22	46647823	46647923	7744656	0	+	0.53	(0.523,0.58]	chr22	812052	95	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.43597	4.508275	4.58058	0.0860403	0.0313935	0.181766	0.127822
chr3	179609500	179609599	1636526	0	+	0.545455	(0.523,0.58]	chr3	171288	13	INTRON	INTRON	NDUFB5:ENSG00000288698	ENSG00000136521.13:ENSG00000288698.1	ENST00000488002.5:ENST00000611971.4:ENST00000493866.5:ENST00000259037.8:ENST00000472629.5:ENST00000680408.1:ENST00000468210.5:ENST00000359944.10:ENST00000477177.1:ENST00000482604.5:ENST00000480374.1:ENST00000496904.5:ENST00000473500.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.43597	4.508275	4.58058	0.0860403	0.0313935	0.181766	0.127822
chr6	170396278	170396377	3076542	0	+	0.575758	(0.523,0.58]	chr6	299192	3	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.43597	4.508275	4.58058	0.0860403	0.0313935	0.181766	0.127822
chr2	169838648	169838747	949456	0	+	0.424242	(0.419,0.45]	chr2	104297	102	INTRON	INTRON	UBR3	ENSG00000144357.18	ENST00000272793.11	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	3.4957	4.508215	5.52073	0.0327198	0.0102234	0.122543	0.0678072
chr13	98488297	98488397	5747399	0	-	0.45	(0.419,0.45]	chr13	563336	56	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000376547.7:ENST00000444574.1:ENST00000491878.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	37	2	4.08324	4.50807	4.9329	0.0727147	0.0716557	0.199502	0.168159
chr9	101167079	101167179	4202911	0	+	0.45	(0.419,0.45]	chr9	399118	351	INTRON	INTRON	PLPPR1	ENSG00000148123.15	ENST00000374874.8:ENST00000456287.5	protein_coding	protein_coding	protein_coding	protein_coding	0	37	2	4.08324	4.50807	4.9329	0.0727147	0.0716557	0.199502	0.168159
chr21	42846453	42846552	7675436	0	-	0.464646	(0.45,0.485]	chr21	802287	28	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	2	110	2	3.58998	4.507925	5.42587	0.0290571	0.00234971	0.116079	0.0258499
chr11	61704547	61704647	4862045	0	+	0.49	(0.485,0.523]	chr11	465896	237	INTRON	INTRON	DAGLA	ENSG00000134780.10	ENST00000257215.10:ENST00000540717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	78	2	3.8948	4.50786	5.12092	0.0414411	0.00310434	0.136301	0.0311614
chr10	103836916	103837016	4758474	0	-	0.49	(0.485,0.523]	chr10	454819	352	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	3	152	2	2.51957	4.5076	6.49563	0.0408331	2.29841e-4	0.13606	0.00498593
chr10	35482803	35482903	4477142	0	+	0.32	(0.29,0.33]	chr10	428126	270	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.42727	4.50748	4.58769	0.0806047	0.0335282	0.177452	0.133139
chr7	139248962	139249062	3504123	0	+	0.32	(0.29,0.33]	chr7	337733	115	INTRON	INTRON	UBN2	ENSG00000157741.15	ENST00000486663.5:ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.42727	4.50748	4.58769	0.0806047	0.0335282	0.177452	0.133139
chr3	134373115	134373215	1920530	0	-	0.59	(0.58,1]	chr3	195371	2	SS5_PROX	SS5_PROX:INTRON	AMOTL2	ENSG00000114019.15	ENST00000249883.10:ENST00000514516.5:ENST00000422605.6:ENST00000513145.1:ENST00000512955.1:ENST00000511759.1:ENST00000510560.1:ENST00000504234.1:ENST00000506107.1:ENST00000515172.1:ENST00000502491.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	72	2	3.1491	4.5070049999999995	5.86491	0.0154006	0.00707578	0.0869771	0.0558168
chr9	68847468	68847568	4162168	0	+	0.48	(0.45,0.485]	chr9	395613	229	INTRON	INTRON	PIP5K1B	ENSG00000107242.20	ENST00000265382.8:ENST00000541509.5:ENST00000377284.5:ENST00000437200.5:ENST00000478500.3:ENST00000440050.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	77	2	3.67093	4.50697	5.34301	0.0328801	0.00582542	0.122593	0.0473208
chr2	235516629	235516729	1062762	0	+	0.57	(0.523,0.58]	chr2	115651	214	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	156	2	2.70191	4.506955	6.312	0.03022	3.69994e-4	0.118034	0.00704866
chr16	81546481	81546581	6508758	0	+	0.45	(0.419,0.45]	chr16	645911	506	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	108	2	2.89397	4.506935	6.1199	0.0151064	0.0132894	0.085778	0.0787251
chr4	3370321	3370421	2005140	0	+	0.48	(0.45,0.485]	chr4	204666	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7:ENST00000338806.4:ENST00000506998.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	94	2	2.76944	4.50683	6.24422	0.0716626	5.58345e-4	0.168159	0.00944382
chr10	132553258	132553358	4616993	0	+	0.52	(0.485,0.523]	chr10	441139	147	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.43249	4.5067450000000004	4.581	0.085711	0.0322299	0.181766	0.12988
chr14	69449847	69449947	5869259	0	+	0.51	(0.485,0.523]	chr14	573180	72	INTRON	INTRON	SLC39A9	ENSG00000029364.12	ENST00000556125.5:ENST00000555245.5:ENST00000538956.5:ENST00000556605.5:ENST00000336643.10:ENST00000031146.8:ENST00000628474.2:ENST00000555840.5:ENST00000557046.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.43249	4.5067450000000004	4.581	0.085711	0.0322299	0.181766	0.12988
chr17	17772835	17772935	6689764	0	+	0.49	(0.485,0.523]	chr17	671344	483	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.43249	4.5067450000000004	4.581	0.085711	0.0322299	0.181766	0.12988
chr17	57404144	57404242	6761249	0	+	0.510204	(0.485,0.523]	chr17	682121	23	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.43249	4.5067450000000004	4.581	0.085711	0.0322299	0.181766	0.12988
chr17	80223437	80223537	6806853	0	+	0.52	(0.485,0.523]	chr17	687274	1	SS5_PROX	SS5_PROX:INTRON	SLC26A11	ENSG00000181045.15	ENST00000361193.8:ENST00000546047.6:ENST00000411502.7:ENST00000571888.5:ENST00000576126.5:ENST00000572725.5:ENST00000571564.5:ENST00000571176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.43249	4.5067450000000004	4.581	0.085711	0.0322299	0.181766	0.12988
chr2	235577625	235577725	1063374	0	+	0.51	(0.485,0.523]	chr2	115656	527	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.43249	4.5067450000000004	4.581	0.085711	0.0322299	0.181766	0.12988
chr10	79163232	79163332	4532989	0	+	0.64	(0.58,1]	chr10	432438	7	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.18518	4.506355	4.82753	0.0427798	0.0374658	0.139793	0.13762
chr11	70782453	70782553	5062106	0	-	0.6	(0.58,1]	chr11	492701	646	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.18518	4.506355	4.82753	0.0427798	0.0374658	0.139793	0.13762
chr16	85593526	85593625	6519008	0	+	0.717172	(0.58,1]	chr16	646396	368	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.18518	4.506355	4.82753	0.0427798	0.0374658	0.139793	0.13762
chr19	16837896	16837995	7217745	0	+	0.585859	(0.58,1]	chr19	737614	59	INTRON	INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000596802.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.18518	4.506355	4.82753	0.0427798	0.0374658	0.139793	0.13762
chr19	41377423	41377512	7263511	0	+	0.617977	(0.58,1]	chr19	745099	1	SS5_PROX	SS5_PROX:INTRON	TMEM91	ENSG00000142046.15	ENST00000539627.5:ENST00000604123.5:ENST00000413014.6:ENST00000392002.7:ENST00000436170.6:ENST00000447302.6:ENST00000544232.5:ENST00000542945.5:ENST00000537354.5:ENST00000342187.9:ENST00000356385.8	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.18518	4.506355	4.82753	0.0427798	0.0374658	0.139793	0.13762
chr21	45427550	45427650	7630538	0	+	0.68	(0.58,1]	chr21	797656	217	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.18518	4.506355	4.82753	0.0427798	0.0374658	0.139793	0.13762
chr22	48755329	48755429	7751823	0	+	0.65	(0.58,1]	chr22	812294	35	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000336769.9	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.18518	4.506355	4.82753	0.0427798	0.0374658	0.139793	0.13762
chr7	76993947	76994047	3398739	0	+	0.69	(0.58,1]	chr7	328286	32	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.18518	4.506355	4.82753	0.0427798	0.0374658	0.139793	0.13762
chr6	111474918	111475017	3236268	0	-	0.444444	(0.419,0.45]	chr6	313697	24	INTRON	INTRON	REV3L	ENSG00000009413.16	ENST00000422377.5:ENST00000434009.5:ENST00000368802.8:ENST00000435970.5:ENST00000358835.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	232	2	3.68906	4.5062	5.32334	0.0204916	8.94851e-5	0.0979776	0.00251652
chr2	233396696	233396796	1060045	0	+	0.5	(0.485,0.523]	chr2	115358	44	INTRON	INTRON	DGKD	ENSG00000077044.11	ENST00000264057.7:ENST00000427930.5:ENST00000447484.5:ENST00000409813.7	protein_coding	protein_coding	protein_coding	protein_coding	3	121	2	2.76707	4.50596	6.24485	0.0103354	0.00665813	0.0681131	0.0540577
chr1	156085080	156085180	250729	0	+	0.54	(0.523,0.58]	chr1	29429	15	INTRON	INTRON	LMNA	ENSG00000160789.24	ENST00000502751.5:ENST00000368301.6:ENST00000470835.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	89	2	2.61478	4.505795	6.39681	0.052707	0.00509616	0.167062	0.0467496
chr20	31766455	31766555	7453797	0	+	0.47	(0.45,0.485]	chr20	775812	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TPX2	ENSG00000088325.16	ENST00000340513.4:ENST00000300403.11	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.11446	4.505655	4.89685	0.0614781	0.0592571	0.176157	0.158506
chr1	26451341	26451440	67694	0	+	0.434343	(0.419,0.45]	chr1	7444	29	INTRON	INTRON	DHDDS	ENSG00000117682.17	ENST00000434391.6:ENST00000236342.12:ENST00000525682.6:ENST00000526219.5:ENST00000360009.6:ENST00000430232.5:ENST00000431933.5:ENST00000416052.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.38804	4.505385	4.62273	0.103601	0.0451818	0.197541	0.154539
chr2	15524445	15524545	1093599	0	-	0.43	(0.419,0.45]	chr2	119100	127	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.38804	4.505385	4.62273	0.103601	0.0451818	0.197541	0.154539
chr3	58335222	58335322	1485570	0	+	0.45	(0.419,0.45]	chr3	159950	12	INTRON	INTRON	PXK	ENSG00000168297.16	ENST00000302779.9:ENST00000468776.5:ENST00000383716.7:ENST00000356151.7:ENST00000463280.5:ENST00000383715.8:ENST00000484288.5:ENST00000479241.5:ENST00000477308.5:ENST00000491164.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.38804	4.505385	4.62273	0.103601	0.0451818	0.197541	0.154539
chr4	47862345	47862445	2228838	0	-	0.42	(0.419,0.45]	chr4	224805	1	SS5_PROX	SS5_PROX:INTRON	NFXL1	ENSG00000170448.12	ENST00000329043.7:ENST00000464756.6:ENST00000381538.7:ENST00000507489.2:ENST00000502448.5:ENST00000507131.5:ENST00000508115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.38804	4.505385	4.62273	0.103601	0.0451818	0.197541	0.154539
chr7	11087716	11087816	3320766	0	+	0.42	(0.419,0.45]	chr7	321852	248	INTRON	INTRON	PHF14	ENSG00000106443.17	ENST00000642461.1:ENST00000634607.2:ENST00000403050.7:ENST00000521747.5:ENST00000423760.6:ENST00000481418.5:ENST00000470665.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.38804	4.505385	4.62273	0.103601	0.0451818	0.197541	0.154539
chr17	77484028	77484128	6805222	0	+	0.57	(0.523,0.58]	chr17	686820	18	EXON_MRNA	EXON_MRNA:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	92	2	3.27435	4.50522	5.73609	0.0321785	0.0017613	0.121593	0.0211077
chr6	34912780	34912880	2900747	0	+	0.4	(0.39,0.419]	chr6	284492	228	INTRON	INTRON	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1:ENST00000650178.1	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	3.55811	4.5051749999999995	5.45224	0.032783	0.00853617	0.122593	0.0610387
chr1	246116105	246116205	701943	0	-	0.42	(0.419,0.45]	chr1	82410	198	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	130	2	2.62246	4.50505	6.38764	0.0173786	0.00863623	0.0928044	0.0623824
chr16	29272113	29272213	6433558	0	+	0.55	(0.523,0.58]	chr16	636745	200	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	1	96	2	3.51606	4.50464	5.49322	0.0216194	0.00324246	0.100615	0.0319521
chr6	2209256	2209356	3084976	0	-	0.42	(0.419,0.45]	chr6	299526	334	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5	protein_coding	protein_coding	protein_coding	protein_coding	4	150	2	2.74915	4.5045649999999995	6.25998	0.0106277	0.00970275	0.0698136	0.0661446
chr11	70689098	70689198	5061170	0	-	0.44	(0.419,0.45]	chr11	492688	191	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.19215	4.504429999999999	4.81671	0.08258	0.0617113	0.18013	0.179396
chr19	7153826	7153926	7323805	0	-	0.42	(0.419,0.45]	chr19	756780	5	INTRON	INTRON	INSR	ENSG00000171105.14	ENST00000341500.9:ENST00000302850.10:ENST00000598216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	36	2	4.19215	4.504429999999999	4.81671	0.08258	0.0617113	0.18013	0.179396
chr3	75497540	75497640	1504107	0	+	0.43	(0.419,0.45]	chr3	160881	402	INTRON	INTRON	LINC02018	ENSG00000272690.6	ENST00000652894.1	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	4.19215	4.504429999999999	4.81671	0.08258	0.0617113	0.18013	0.179396
chr5	72629770	72629870	2690729	0	-	0.42	(0.419,0.45]	chr5	265727	489	INTRON	INTRON	LINC02056	ENSG00000248371.5	ENST00000512573.5	lncRNA	lncRNA	lncRNA	lncRNA	0	36	2	4.19215	4.504429999999999	4.81671	0.08258	0.0617113	0.18013	0.179396
chr7	17841498	17841598	3546616	0	-	0.43	(0.419,0.45]	chr7	342716	11	INTRON	INTRON	SNX13	ENSG00000071189.21	ENST00000428135.7:ENST00000611725.4:ENST00000409076.6:ENST00000444712.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	36	2	4.19215	4.504429999999999	4.81671	0.08258	0.0617113	0.18013	0.179396
chr1	31579208	31579267	81038	0	+	0.491525	(0.485,0.523]	chr1	9284	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:INTRON	LINC01226:TINAGL1	ENSG00000284543.1:ENSG00000142910.16	ENST00000639839.1:ENST00000640226.1:ENST00000457433.6:ENST00000271064.12:ENST00000461030.5:ENST00000478398.5:ENST00000481165.5:ENST00000537531.2:ENST00000468635.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	1	109	2	3.92311	4.504195	5.08528	0.0105998	0.0086528	0.0697435	0.0612699
chr20	58695789	58695889	7498641	0	+	0.49	(0.485,0.523]	chr20	782002	8	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	95	2	2.57989	4.50406	6.42823	0.0899526	2.78987e-4	0.185791	0.00577243
chr3	42622414	42622514	1452199	0	+	0.32	(0.29,0.33]	chr3	155027	5	INTRON	INTRON	NKTR	ENSG00000114857.19	ENST00000468735.6:ENST00000487466.5:ENST00000429888.5:ENST00000232978.13:ENST00000478488.1:ENST00000465584.5:ENST00000466553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	75	2	3.48839	4.504055	5.51972	0.0208628	0.00869049	0.0991037	0.0612699
chr2	164788962	164789061	1299024	0	-	0.434343	(0.419,0.45]	chr2	139300	88	INTRON	INTRON	COBLL1	ENSG00000082438.18	ENST00000652658.2:ENST00000375458.6:ENST00000342193.8:ENST00000409184.8:ENST00000629362.2:ENST00000456171.5:ENST00000491126.6:ENST00000434366.5:ENST00000456693.5:ENST00000448708.5:ENST00000439313.5:ENST00000444537.5:ENST00000414843.5:ENST00000445474.2:ENST00000483743.6:ENST00000496396.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	81	2	3.68516	4.503555	5.32195	0.0431627	0.00665473	0.138403	0.0515847
chr19	34389895	34389995	7243249	0	+	0.52	(0.485,0.523]	chr19	741718	79	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	97	2	3.56212	4.5035050000000005	5.44489	0.0199384	0.00377098	0.0967486	0.0353672
chr10	34684963	34685063	4670506	0	-	0.27	[0,0.29]	chr10	445537	54	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	2	187	2	3.84838	4.503255	5.15813	0.00892503	6.77101e-5	0.0637469	0.00205005
chr1	29282079	29282175	78842	0	+	0.458333	(0.45,0.485]	chr1	8965	16	INTRON	INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2:ENST00000415600.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.49786	4.50319	4.50852	0.101311	0.0302873	0.196131	0.126768
chr16	16274827	16274911	6408434	0	+	0.47619	(0.45,0.485]	chr16	633351	4	SS3_PROX	SS3_PROX:INTRON	NOMO3	ENSG00000103226.19	ENST00000676846.1:ENST00000399336.9:ENST00000677912.1:ENST00000677777.1:ENST00000678192.1:ENST00000678393.1:ENST00000678538.1:ENST00000679086.1:ENST00000574894.2:ENST00000678080.1:ENST00000677260.1:ENST00000676550.1:ENST00000263012.10:ENST00000575225.5:ENST00000677781.1:ENST00000677163.1:ENST00000678148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.49786	4.50319	4.50852	0.101311	0.0302873	0.196131	0.126768
chr16	85520780	85520880	6518279	0	+	0.47	(0.45,0.485]	chr16	646391	1615	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.49786	4.50319	4.50852	0.101311	0.0302873	0.196131	0.126768
chr22	46647226	46647325	7744650	0	+	0.454545	(0.45,0.485]	chr22	812052	89	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.49786	4.50319	4.50852	0.101311	0.0302873	0.196131	0.126768
chr6	145631830	145631928	3284646	0	-	0.479592	(0.45,0.485]	chr6	317348	43	EXON_MRNA	EXON_MRNA:INTRON	EPM2A	ENSG00000112425.16	ENST00000638717.1:ENST00000450221.6:ENST00000639423.1:ENST00000639049.1:ENST00000639799.1:ENST00000367519.9:ENST00000638554.1:ENST00000611340.5:ENST00000435470.2:ENST00000638262.1:ENST00000639465.1:ENST00000638597.1:ENST00000640351.1:ENST00000640225.1:ENST00000639106.1:ENST00000639859.1:ENST00000640980.1:ENST00000638783.1:ENST00000638778.1:ENST00000639648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.49786	4.50319	4.50852	0.101311	0.0302873	0.196131	0.126768
chr9	133735686	133735785	4427940	0	-	0.464646	(0.45,0.485]	chr9	423136	11	INTRON	INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000427237.6:ENST00000298628.6	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.49786	4.50319	4.50852	0.101311	0.0302873	0.196131	0.126768
chr16	81549680	81549780	6508790	0	+	0.67	(0.58,1]	chr16	645911	538	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	175	2	4.41041	4.502345	4.59428	0.00263932	2.81862e-4	0.0325876	0.00579621
chr20	62958656	62958753	7508283	0	+	0.618557	(0.58,1]	chr20	783180	7	INTRON	INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	175	2	4.41041	4.502345	4.59428	0.00263932	2.81862e-4	0.0325876	0.00579621
chr20	33010235	33010331	7457391	0	+	0.552083	(0.523,0.58]	chr20	776365	12	INTRON	INTRON	BPIFB2	ENSG00000078898.7	ENST00000170150.4	protein_coding	protein_coding	protein_coding	protein_coding	2	127	2	2.90769	4.502235	6.09678	0.02968	6.74499e-4	0.116253	0.0108081
chr20	34072630	34072730	7460398	0	+	0.51	(0.485,0.523]	chr20	776606	3	SS5_PROX	SS5_PROX:INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000413297.5:ENST00000246194.8:ENST00000333552.9:ENST00000442805.1:ENST00000493399.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	269	2	4.29191	4.5022	4.71249	0.00537132	8.00113e-5	0.0481897	0.00231762
chr4	113755190	113755290	2314371	0	-	0.33	(0.29,0.33]	chr4	232473	1	SS3_PROX	SS3_PROX:INTRON	CAMK2D	ENSG00000145349.18	ENST00000683023.1:ENST00000296402.9:ENST00000511664.6:ENST00000394524.7:ENST00000342666.9:ENST00000514328.5:ENST00000515496.5:ENST00000394522.7:ENST00000505990.5:ENST00000379773.6:ENST00000508738.5:ENST00000509907.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	78	2	3.05751	4.50172	5.94593	0.0226356	0.0101801	0.108193	0.068447
chr5	1329189	1329287	2609107	0	-	0.602041	(0.58,1]	chr5	259719	29	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	93	2	3.33506	4.50102	5.66698	0.0102927	0.00321851	0.0684871	0.0319521
chr16	75085732	75085831	6492778	0	+	0.40404	(0.39,0.419]	chr16	645349	7	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	128	2	2.60642	4.500965	6.39551	0.0174185	0.00743138	0.0928044	0.057548
chr22	36026739	36026839	7805809	0	-	0.38	(0.36,0.39]	chr22	817798	652	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.30212	4.50072	4.69932	0.0877431	0.0494303	0.183437	0.160725
chr3	149608327	149608427	1940704	0	-	0.37	(0.36,0.39]	chr3	197491	322	INTRON	INTRON	WWTR1	ENSG00000018408.15	ENST00000465804.5:ENST00000360632.8:ENST00000467467.5:ENST00000479238.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.30212	4.50072	4.69932	0.0877431	0.0494303	0.183437	0.160725
chr13	113509937	113510037	5658376	0	+	0.48	(0.45,0.485]	chr13	555704	3	SS3_PROX	SS3_PROX:INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000462877.5	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	3.22036	4.50066	5.78096	0.0166968	0.016408	0.0911382	0.0884836
chr16	2097503	2097603	6535021	0	-	0.66	(0.58,1]	chr16	649509	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PKD1	ENSG00000008710.20	ENST00000262304.9:ENST00000423118.5:ENST00000487932.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	93	2	2.93515	4.50057	6.06599	0.00938921	0.00477081	0.064735	0.0450109
chr13	113032287	113032386	5655952	0	+	0.393939	(0.39,0.419]	chr13	555157	54	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486806.1:ENST00000473345.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.30157	4.499775	4.69798	0.088901	0.0496288	0.183874	0.160725
chr2	165891584	165891683	1300568	0	-	0.353535	(0.33,0.36]	chr2	139463	7	UTR3	UTR3:EXON_MRNA:INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681167.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000680925.1:ENST00000679840.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	126	2	2.57256	4.499775	6.42699	0.0180206	0.00578704	0.0952934	0.0501412
chr2	239286873	239286973	1391577	0	-	0.4	(0.39,0.419]	chr2	148740	353	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	35	2	4.30157	4.499775	4.69798	0.088901	0.0496288	0.183874	0.160725
chr16	20691374	20691474	6416372	0	+	0.5	(0.485,0.523]	chr16	634386	93	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	102	2	3.34087	4.49939	5.65791	0.0181582	0.00419923	0.0921579	0.0380601
chr22	28020759	28020858	7775221	0	-	0.555556	(0.523,0.58]	chr22	815662	60	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7:ENST00000612946.4	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.27377	4.49932	5.72487	0.0163679	0.0137592	0.0875379	0.0814923
chr10	103691529	103691629	4757011	0	-	0.61	(0.58,1]	chr10	454779	135	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	69	2	3.44157	4.49919	5.55681	0.0126042	0.00760198	0.0761905	0.0561937
chr17	80274399	80274498	6807308	0	+	0.626263	(0.58,1]	chr17	687364	6	INTRON	INTRON	RNF213	ENSG00000173821.20	ENST00000582970.6:ENST00000508628.6:ENST00000319921.4	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.44157	4.49919	5.55681	0.0126042	0.00760198	0.0761905	0.0561937
chr2	239087358	239087458	1389549	0	-	0.61	(0.58,1]	chr2	148610	4	SS5_PROX	SS5_PROX:INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000487617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	69	2	3.44157	4.49919	5.55681	0.0126042	0.00760198	0.0761905	0.0561937
chr7	220750	220850	3305862	0	+	0.67	(0.58,1]	chr7	320161	114	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.44157	4.49919	5.55681	0.0126042	0.00760198	0.0761905	0.0561937
chr2	138453943	138454043	1278011	0	-	0.36	(0.33,0.36]	chr2	137692	71	INTRON	INTRON	SPOPL-DT	ENSG00000228043.5	ENST00000431985.5:ENST00000414911.1	lncRNA	lncRNA	lncRNA	lncRNA	1	80	2	3.838	4.498654999999999	5.15931	0.043896	0.00414833	0.139792	0.0377122
chrX	9609604	9609704	7843896	0	+	0.5	(0.485,0.523]	chrX	822423	487	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	100	2	3.05773	4.4983949999999995	5.93906	0.0113657	0.00856934	0.0723462	0.0612055
chr17	66781790	66781890	6788240	0	+	0.34	(0.33,0.36]	chr17	684320	68	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.102	4.498340000000001	4.89468	0.0642879	0.0629186	0.184676	0.160778
chr9	134338037	134338137	4260803	0	+	0.69	(0.58,1]	chr9	406311	110	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	177	2	4.49148	4.4980150000000005	4.50455	0.00215269	3.89116e-4	0.02913	0.00732219
chr7	139705042	139705142	3723196	0	-	0.49	(0.485,0.523]	chr7	357498	730	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	2	197	2	4.09708	4.497865	4.89865	0.00772253	1.85073e-4	0.0586912	0.00428663
chr16	89428857	89428956	6661122	0	-	0.353535	(0.33,0.36]	chr16	666747	101	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	77	2	3.49318	4.497605	5.50203	0.0265895	0.00940277	0.111433	0.0648045
chr13	97368550	97368650	5632277	0	+	0.29	[0,0.29]	chr13	553226	16	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000449284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	97	2	2.90933	4.497585	6.08584	0.0114163	0.00505376	0.0723519	0.0465263
chr2	78139529	78139629	1208845	0	-	0.28	[0,0.29]	chr2	130071	1993	INTRON	INTRON	ENSG00000227088	ENSG00000227088.2	ENST00000667782.1	lncRNA	lncRNA	lncRNA	lncRNA	2	97	2	2.90933	4.497585	6.08584	0.0114163	0.00505376	0.0723519	0.0465263
chr22	48699951	48700050	7751267	0	+	0.494949	(0.485,0.523]	chr22	812283	62	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	156	2	3.59615	4.49742	5.39869	0.00874919	0.00421243	0.0629213	0.0380601
chr8	22388159	22388259	3770230	0	+	0.53	(0.523,0.58]	chr8	362727	83	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	7	609	2	3.60073	4.497325	5.39392	0.00466215	3.85512e-6	0.044542	2.64149e-4
chr13	49000868	49000968	5589675	0	+	0.26	[0,0.29]	chr13	551090	130	INTRON	INTRON	FNDC3A	ENSG00000102531.16	ENST00000492622.6:ENST00000378383.5:ENST00000541916.5:ENST00000484074.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.45163	4.49719	4.54275	0.0681032	0.0278965	0.164448	0.12105
chr2	121480116	121480215	1262527	0	-	0.454545	(0.45,0.485]	chr2	136083	98	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	80	2	2.98123	4.497145	6.01306	0.0270875	0.0113949	0.119337	0.0723462
chr2	11302925	11303025	1088984	0	-	0.42	(0.419,0.45]	chr2	118747	148	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	221	2	3.97586	4.496615	5.01737	0.0128732	2.13475e-4	0.0773018	0.00475054
chr1	236007731	236007830	693165	0	-	0.575758	(0.523,0.58]	chr1	81538	135	INTRON	INTRON	NID1	ENSG00000116962.15	ENST00000366595.7:ENST00000264187.7	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.34118	4.4963750000000005	4.65157	0.0787008	0.0372357	0.175203	0.139793
chr16	84736954	84737053	6514199	0	+	0.545455	(0.523,0.58]	chr16	646283	31	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.34118	4.4963750000000005	4.65157	0.0787008	0.0372357	0.175203	0.139793
chr22	37743632	37743732	7721743	0	+	0.54	(0.523,0.58]	chr22	808630	22	INTRON	INTRON	TRIOBP	ENSG00000100106.22	ENST00000644935.1:ENST00000344404.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.34118	4.4963750000000005	4.65157	0.0787008	0.0372357	0.175203	0.139793
chr3	10191687	10191787	1406795	0	+	0.55	(0.523,0.58]	chr3	151140	133	INTRON	INTRON	IRAK2	ENSG00000134070.5	ENST00000256458.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.34118	4.4963750000000005	4.65157	0.0787008	0.0372357	0.175203	0.139793
chr3	38118169	38118269	1739535	0	-	0.55	(0.523,0.58]	chr3	180041	140	INTRON	INTRON	ACAA1	ENSG00000060971.19	ENST00000451419.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	34	2	4.34118	4.4963750000000005	4.65157	0.0787008	0.0372357	0.175203	0.139793
chr4	75665514	75665613	2251148	0	-	0.525253	(0.523,0.58]	chr4	227151	23	INTRON	INTRON	G3BP2	ENSG00000138757.15	ENST00000676666.1:ENST00000678062.1:ENST00000678100.1:ENST00000678122.1:ENST00000677265.1:ENST00000678971.1:ENST00000679281.1:ENST00000677333.1:ENST00000676470.1:ENST00000677620.1:ENST00000677606.1:ENST00000678798.1:ENST00000677583.1:ENST00000678447.1:ENST00000678875.1:ENST00000678244.1:ENST00000676974.1:ENST00000677003.1:ENST00000677889.1:ENST00000678329.1:ENST00000676584.1:ENST00000678552.1:ENST00000677192.1:ENST00000677727.1:ENST00000678265.1:ENST00000676839.1:ENST00000677876.1:ENST00000678123.1:ENST00000678578.1:ENST00000677171.1:ENST00000395719.7:ENST00000359707.9:ENST00000677060.1:ENST00000679294.1:ENST00000677201.1:ENST00000677952.1:ENST00000677125.1:ENST00000678273.1:ENST00000357854.7:ENST00000677162.1:ENST00000677566.1:ENST00000677970.1:ENST00000503660.5:ENST00000678670.1:ENST00000502654.5:ENST00000507745.5:ENST00000513927.1:ENST00000511146.5:ENST00000507252.5:ENST00000507701.1:ENST00000499709.3:ENST00000511868.6:ENST00000508510.6:ENST00000676702.1:ENST00000677145.1:ENST00000509561.6:ENST00000677489.1:ENST00000678389.1:ENST00000676485.1:ENST00000678908.1:ENST00000678843.1:ENST00000676641.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.34118	4.4963750000000005	4.65157	0.0787008	0.0372357	0.175203	0.139793
chr6	43429490	43429584	2919228	0	+	0.56383	(0.523,0.58]	chr6	287099	10	INTRON	INTRON	ABCC10	ENSG00000124574.15	ENST00000372515.8:ENST00000372530.9:ENST00000502549.1:ENST00000443426.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.34118	4.4963750000000005	4.65157	0.0787008	0.0372357	0.175203	0.139793
chr19	953591	953690	7185382	0	+	0.59596	(0.58,1]	chr19	730741	205	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	119	2	2.30423	4.49611	6.68799	0.0260615	0.00130716	0.116811	0.0220198
chr3	37862278	37862378	1443266	0	+	0.81	(0.58,1]	chr3	153954	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CTDSPL	ENSG00000144677.15	ENST00000273179.10:ENST00000443503.6:ENST00000435525.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	453	2	4.13056	4.49607	4.86158	8.33526e-4	2.51415e-5	0.0171491	9.92488e-4
chr1	241509473	241509571	695202	0	-	0.459184	(0.45,0.485]	chr1	81965	8	EXON_MRNA	EXON_MRNA:INTRON	FH	ENSG00000091483.8	ENST00000493477.2:ENST00000684483.1:ENST00000684161.1:ENST00000682162.1:ENST00000366560.4:ENST00000682567.1:ENST00000683521.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.41963	4.496065	4.5725	0.0926859	0.0355247	0.188571	0.137983
chr10	101785971	101786067	4749811	0	-	0.479167	(0.45,0.485]	chr10	454012	17	UTR3	UTR3:EXON_MRNA	OGA	ENSG00000198408.14	ENST00000439817.5:ENST00000361464.8	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.41963	4.496065	4.5725	0.0926859	0.0355247	0.188571	0.137983
chr10	109906091	109906191	4759676	0	-	0.48	(0.45,0.485]	chr10	455022	116	INTRON	INTRON	XPNPEP1	ENSG00000108039.18	ENST00000322238.12:ENST00000369683.5:ENST00000502935.6:ENST00000488118.6:ENST00000509646.5:ENST00000460523.5:ENST00000403138.6:ENST00000430337.5:ENST00000423625.1:ENST00000443078.5:ENST00000506777.5:ENST00000490740.6:ENST00000451592.5:ENST00000508275.5:ENST00000475123.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.41963	4.496065	4.5725	0.0926859	0.0355247	0.188571	0.137983
chr14	94306814	94306911	6046240	0	-	0.474227	(0.45,0.485]	chr14	593049	2	INTRON	INTRON	SERPINA6	ENSG00000170099.6	ENST00000341584.4:ENST00000555056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.41963	4.496065	4.5725	0.0926859	0.0355247	0.188571	0.137983
chr14	94577605	94577705	5902670	0	+	0.46	(0.45,0.485]	chr14	576936	78	INTRON	INTRON	SERPINA5	ENSG00000188488.14	ENST00000553780.5:ENST00000554220.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.41963	4.496065	4.5725	0.0926859	0.0355247	0.188571	0.137983
chr16	66555931	66556029	6469065	0	+	0.459184	(0.45,0.485]	chr16	641927	21	INTRON	INTRON	CKLF:CKLF-CMTM1	ENSG00000217555.13:ENSG00000254788.7	ENST00000534692.1:ENST00000345436.8:ENST00000351137.8:ENST00000362093.4:ENST00000526149.1:ENST00000264001.9:ENST00000417030.2:ENST00000527845.1:ENST00000527729.5:ENST00000532838.1:ENST00000616804.5:ENST00000615332.5:ENST00000563092.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.41963	4.496065	4.5725	0.0926859	0.0355247	0.188571	0.137983
chr17	44429678	44429778	6912112	0	-	0.46	(0.45,0.485]	chr17	703814	48	INTRON	INTRON	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000335500.8:ENST00000635257.1:ENST00000587228.5:ENST00000585614.1:ENST00000590041.5:ENST00000586265.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.41963	4.496065	4.5725	0.0926859	0.0355247	0.188571	0.137983
chr17	74872496	74872587	6970033	0	-	0.483516	(0.45,0.485]	chr17	710739	3	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FDXR	ENSG00000161513.12	ENST00000583881.5:ENST00000293195.10:ENST00000420580.6:ENST00000578473.5:ENST00000579482.5:ENST00000581530.5:ENST00000577509.5:ENST00000583917.5:ENST00000442102.6:ENST00000582944.5:ENST00000413947.6:ENST00000582710.5:ENST00000580492.5:ENST00000579543.1:ENST00000581219.1:ENST00000577932.1:ENST00000610946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.41963	4.496065	4.5725	0.0926859	0.0355247	0.188571	0.137983
chr18	69617688	69617788	7085352	0	+	0.46	(0.45,0.485]	chr18	722127	178	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.41963	4.496065	4.5725	0.0926859	0.0355247	0.188571	0.137983
chr3	60716186	60716285	1800772	0	-	0.454545	(0.45,0.485]	chr3	186816	256	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5:ENST00000490952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.41963	4.496065	4.5725	0.0926859	0.0355247	0.188571	0.137983
chr3	186584871	186584966	1649777	0	+	0.473684	(0.45,0.485]	chr3	173460	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DNAJB11	ENSG00000090520.12	ENST00000439351.5:ENST00000495390.2:ENST00000464877.2:ENST00000680338.1:ENST00000265028.8:ENST00000681475.1:ENST00000681543.1:ENST00000679794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.41963	4.496065	4.5725	0.0926859	0.0355247	0.188571	0.137983
chr6	16759262	16759360	3104446	0	-	0.459184	(0.45,0.485]	chr6	300917	42	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000675689.1:ENST00000473388.6:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1:ENST00000676138.1:ENST00000467008.5:ENST00000498374.1:ENST00000492857.1:ENST00000479680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.41963	4.496065	4.5725	0.0926859	0.0355247	0.188571	0.137983
chr7	139708239	139708339	3723228	0	-	0.46	(0.45,0.485]	chr7	357498	762	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.41963	4.496065	4.5725	0.0926859	0.0355247	0.188571	0.137983
chr6	519380	519480	3077334	0	-	0.66	(0.58,1]	chr6	299297	193	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.68463	4.49605	5.30747	0.0196049	0.00404771	0.0955413	0.0371291
chr22	23773278	23773378	7693453	0	+	0.6	(0.58,1]	chr22	805202	3	SS5_PROX	SS5_PROX:INTRON	MMP11	ENSG00000099953.10	ENST00000465385.5:ENST00000477567.5:ENST00000489582.5:ENST00000428253.1:ENST00000465730.1:ENST00000215743.8:ENST00000437086.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	103	2	4.10163	4.49585	4.89007	0.00872525	0.00506731	0.0612699	0.0465789
chr1	39116706	39116806	93788	0	+	0.34	(0.33,0.36]	chr1	11068	106	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000689911.1:ENST00000567887.5:ENST00000372915.8:ENST00000472385.2:ENST00000693209.1:ENST00000524432.5:ENST00000467673.5:ENST00000688212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.49572	4.4958	4.49588	0.103264	0.033477	0.197541	0.133139
chr2	87063767	87063867	1214445	0	-	0.35	(0.33,0.36]	chr2	130864	76	INTRON	INTRON	ANAPC1P2	ENSG00000285793.1	ENST00000648819.1	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.49572	4.4958	4.49588	0.103264	0.033477	0.197541	0.133139
chr5	138800340	138800440	2546224	0	+	0.35	(0.33,0.36]	chr5	252819	89	INTRON	INTRON	CTNNA1	ENSG00000044115.21	ENST00000517980.5:ENST00000522227.5:ENST00000523912.5:ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518910.5:ENST00000519309.5:ENST00000519113.5:ENST00000520158.5:ENST00000518825.5:ENST00000518585.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.49572	4.4958	4.49588	0.103264	0.033477	0.197541	0.133139
chr5	139612690	139612789	2549466	0	+	0.343434	(0.33,0.36]	chr5	253131	119	INTRON	INTRON	UBE2D2	ENSG00000131508.16	ENST00000511725.5:ENST00000505007.5:ENST00000398733.8:ENST00000510470.1:ENST00000398734.8:ENST00000505548.5:ENST00000253815.3:ENST00000511691.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.49572	4.4958	4.49588	0.103264	0.033477	0.197541	0.133139
chr6	44411610	44411709	2922016	0	+	0.343434	(0.33,0.36]	chr6	287752	26	INTRON	INTRON	CDC5L	ENSG00000096401.8	ENST00000371477.4	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.49572	4.4958	4.49588	0.103264	0.033477	0.197541	0.133139
chr9	134412592	134412691	4261559	0	+	0.676768	(0.58,1]	chr9	406352	31	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000481739.2:ENST00000356384.4:ENST00000672570.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	73	2	3.03676	4.4956499999999995	5.95454	0.0198789	0.0059453	0.100864	0.0506158
chr22	29967877	29967977	7710207	0	+	0.31	(0.29,0.33]	chr22	806661	104	INTRON	INTRON	MTMR3	ENSG00000100330.16	ENST00000333027.7:ENST00000401950.7:ENST00000495098.5:ENST00000445401.5:ENST00000323630.9:ENST00000351488.7:ENST00000415511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.33251	4.495595	4.65868	0.0735584	0.0396433	0.17026	0.143388
chr8	70244906	70245006	3993662	0	-	0.43	(0.419,0.45]	chr8	382237	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NCOA2	ENSG00000140396.13	ENST00000452400.7:ENST00000518287.6:ENST00000519724.1:ENST00000520416.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	97	2	2.91455	4.49525	6.07595	0.06467	0.00132452	0.162218	0.0173138
chr2	96860261	96860352	1222477	0	-	0.483516	(0.45,0.485]	chr2	132205	7	UTR3	UTR3:EXON_MRNA	SEMA4C	ENSG00000168758.11	ENST00000305476.10:ENST00000474420.1:ENST00000482925.5:ENST00000467747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	92	2	3.06332	4.495185	5.92705	0.0467992	0.00129636	0.143232	0.0170746
chr19	51346246	51346339	7399047	0	-	0.473118	(0.45,0.485]	chr19	769721	7	EXON_MRNA	EXON_MRNA:INTRON	ETFB	ENSG00000105379.10	ENST00000309244.9:ENST00000354232.8:ENST00000596253.1:ENST00000594361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	106	2	2.62266	4.495165	6.36767	0.0243222	0.00618594	0.113231	0.0519442
chr22	32804718	32804818	7717656	0	+	0.48	(0.45,0.485]	chr22	807776	22	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	1	82	2	2.87326	4.49486	6.11646	0.033576	0.00956667	0.133139	0.0658012
chr16	85570948	85571048	6518782	0	+	0.52	(0.485,0.523]	chr16	646396	142	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.33772	4.49485	4.65198	0.0783889	0.03818	0.175203	0.140822
chr17	43569199	43569299	6739257	0	+	0.5	(0.485,0.523]	chr17	678633	240	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	34	2	4.33772	4.49485	4.65198	0.0783889	0.03818	0.175203	0.140822
chr18	46200017	46200117	7055965	0	+	0.51	(0.485,0.523]	chr18	720236	253	INTRON	INTRON	C18orf25	ENSG00000152242.11	ENST00000588730.1:ENST00000587591.5:ENST00000619230.1:ENST00000615052.5:ENST00000619301.4:ENST00000615553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.33772	4.49485	4.65198	0.0783889	0.03818	0.175203	0.140822
chr2	235500244	235500344	1062598	0	+	0.52	(0.485,0.523]	chr2	115651	50	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.33772	4.49485	4.65198	0.0783889	0.03818	0.175203	0.140822
chr1	1306479	1306571	380911	0	-	0.684783	(0.58,1]	chr1	43018	7	INTRON	INTRON	ACAP3	ENSG00000131584.19	ENST00000354700.10:ENST00000472541.5:ENST00000354980.7:ENST00000479108.5:ENST00000438966.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.29454	4.49482	4.6951	0.0521567	0.0305531	0.148503	0.126768
chr1	54601168	54601268	131707	0	+	0.6	(0.58,1]	chr1	16212	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ACOT11	ENSG00000162390.18	ENST00000481208.5:ENST00000371316.3:ENST00000343744.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.29454	4.49482	4.6951	0.0521567	0.0305531	0.148503	0.126768
chr10	119360949	119361049	4594857	0	+	0.59	(0.58,1]	chr10	439173	340	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.29454	4.49482	4.6951	0.0521567	0.0305531	0.148503	0.126768
chr10	132711155	132711255	4618579	0	+	0.71	(0.58,1]	chr10	441181	3	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000487614.1:ENST00000498337.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.29454	4.49482	4.6951	0.0521567	0.0305531	0.148503	0.126768
chr12	132546705	132546805	5353083	0	+	0.69	(0.58,1]	chr12	523670	184	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.29454	4.49482	4.6951	0.0521567	0.0305531	0.148503	0.126768
chr14	89325214	89325314	6027353	0	-	0.59	(0.58,1]	chr14	591449	403	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.29454	4.49482	4.6951	0.0521567	0.0305531	0.148503	0.126768
chr21	43728814	43728899	7623882	0	+	0.6	(0.58,1]	chr21	796697	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000438837.1:ENST00000498040.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.29454	4.49482	4.6951	0.0521567	0.0305531	0.148503	0.126768
chr22	19823572	19823672	7764463	0	-	0.61	(0.58,1]	chr22	813913	18	INTRON	INTRON	GNB1L	ENSG00000185838.14	ENST00000329517.11:ENST00000403325.5:ENST00000405009.5:ENST00000460402.5:ENST00000481086.1:ENST00000453108.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.29454	4.49482	4.6951	0.0521567	0.0305531	0.148503	0.126768
chr6	44414287	44414387	2922043	0	+	0.59	(0.58,1]	chr6	287752	53	INTRON	INTRON	CDC5L	ENSG00000096401.8	ENST00000371477.4	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.29454	4.49482	4.6951	0.0521567	0.0305531	0.148503	0.126768
chr9	133734073	133734173	4427923	0	-	0.7	(0.58,1]	chr9	423132	1	CDS_START	CDS_START:CDS:EXON_MRNA	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000427237.6:ENST00000298628.6	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.29454	4.49482	4.6951	0.0521567	0.0305531	0.148503	0.126768
chr2	235591322	235591422	1063511	0	+	0.52	(0.485,0.523]	chr2	115656	664	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	123	2	2.47341	4.49479	6.51617	0.0206524	0.00406194	0.102713	0.0413652
chr17	740800	740900	6663978	0	+	0.52	(0.485,0.523]	chr17	667329	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TLCD3A	ENSG00000167695.15	ENST00000572018.5:ENST00000301324.8:ENST00000308278.13:ENST00000570699.1:ENST00000577008.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	90	2	3.04904	4.494675	5.94031	0.0457169	0.00107389	0.142336	0.0148869
chr8	80171206	80171294	4006103	0	-	0.636364	(0.58,1]	chr8	382872	1	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	TPD52	ENSG00000076554.16	ENST00000518937.6:ENST00000379096.9:ENST00000521354.5:ENST00000518517.5:ENST00000521241.6:ENST00000523753.5:ENST00000519250.5:ENST00000520795.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	70	2	3.25332	4.49467	5.73602	0.0120565	0.00904546	0.0754623	0.0637469
chr4	869467	869565	2178287	0	-	0.479592	(0.45,0.485]	chr4	220580	9	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	76	2	3.30591	4.494605	5.6833	0.0195193	0.0135996	0.0955413	0.0811697
chr9	134351909	134352009	4260942	0	+	0.57	(0.523,0.58]	chr9	406311	249	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	100	2	3.68393	4.494540000000001	5.30515	0.0162298	0.00509102	0.0873195	0.0433513
chr17	72555529	72555628	6963866	0	-	0.353535	(0.33,0.36]	chr17	710389	211	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	2	110	2	3.52466	4.49402	5.46338	0.0281891	0.00302288	0.114124	0.0305643
chr6	3352560	3352659	3087015	0	-	0.424242	(0.419,0.45]	chr6	299774	282	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000496753.1:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	132	2	3.05078	4.493985	5.93719	0.0176643	0.00643443	0.0909046	0.0503748
chr11	20023632	20023729	4819240	0	+	0.43299	(0.419,0.45]	chr11	461465	1	INTRON	INTRON	NAV2	ENSG00000166833.23	ENST00000360655.8:ENST00000396085.6:ENST00000349880.9:ENST00000396087.7:ENST00000533917.5:ENST00000525322.5:ENST00000530408.1	protein_coding	protein_coding	protein_coding	protein_coding	1	95	2	2.52086	4.493869999999999	6.46688	0.0683849	0.00757951	0.193274	0.0579104
chr7	47476905	47477005	3588577	0	-	0.44	(0.419,0.45]	chr7	346123	238	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	3.1968	4.49384	5.79088	0.022052	0.0193853	0.101502	0.0994526
chr16	20691974	20692074	6416378	0	+	0.43	(0.419,0.45]	chr16	634386	99	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	111	2	3.39352	4.493335	5.59315	0.029494	0.00473168	0.116079	0.0413976
chr8	128038416	128038516	3920264	0	+	0.49	(0.485,0.523]	chr8	374312	1	SS3_PROX	SS3_PROX:INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1	lncRNA	lncRNA	lncRNA	lncRNA	3	124	2	3.16553	4.49317	5.82081	0.0138807	0.00373279	0.0804838	0.0351464
chr11	33140668	33140767	5022390	0	-	0.292929	(0.29,0.33]	chr11	485801	41	INTRON	INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6:ENST00000526480.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	122	2	3.01221	4.493125	5.97404	0.0096909	0.00572726	0.0661757	0.0467736
chr7	74528536	74528635	3392119	0	+	0.525253	(0.523,0.58]	chr7	327389	40	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6:ENST00000476977.5:ENST00000489094.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	76	2	3.13506	4.492965	5.85087	0.0186841	0.0132767	0.0976296	0.0787251
chrX	47221172	47221270	7877815	0	+	0.479592	(0.45,0.485]	chrX	825683	17	INTRON	INTRON	CDK16	ENSG00000102225.17	ENST00000517997.5:ENST00000517479.1:ENST00000457458.6:ENST00000522883.1:ENST00000520295.5:ENST00000357227.9:ENST00000519758.5:ENST00000520893.5:ENST00000517426.5:ENST00000522234.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	78	2	3.82378	4.492635	5.16149	0.0427653	0.0039984	0.13762	0.0370532
chr2	96185054	96185153	1220355	0	-	0.464646	(0.45,0.485]	chr2	131670	3	UTR3	UTR3:EXON_MRNA	STARD7	ENSG00000084090.14	ENST00000337288.10:ENST00000479456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	126	2	2.66534	4.4926	6.31986	0.046065	4.53935e-4	0.142918	0.00818426
chr14	104871055	104871155	5925922	0	+	0.66	(0.58,1]	chr14	579942	21	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	4.15724	4.4923850000000005	4.82753	0.0427798	0.00107173	0.13762	0.0148869
chr16	81646968	81647066	6509769	0	+	0.336735	(0.33,0.36]	chr16	645932	8	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8:ENST00000564666.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.211	4.492275	4.77355	0.0735809	0.0541541	0.17026	0.167824
chr7	78070058	78070158	3612640	0	-	0.35	(0.33,0.36]	chr7	348996	40	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000628980.2:ENST00000419488.5:ENST00000629359.2:ENST00000535697.5:ENST00000637441.1:ENST00000626691.2:ENST00000522391.3:ENST00000637976.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.211	4.492275	4.77355	0.0735809	0.0541541	0.17026	0.167824
chr10	79109124	79109224	4532446	0	+	0.56	(0.523,0.58]	chr10	432420	395	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	94	2	3.4477	4.492175	5.53665	0.0242383	0.00291382	0.106588	0.0298557
chr11	115318143	115318243	5129267	0	-	0.37	(0.36,0.39]	chr11	498106	308	INTRON	INTRON	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000541434.5:ENST00000543249.1:ENST00000540951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	105	2	2.98319	4.49209	6.00099	0.0139273	0.0119153	0.0805916	0.0749795
chr9	4713296	4713396	4269903	0	-	0.31	(0.29,0.33]	chr9	407899	2	SS3_PROX	SS3_PROX:INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	3.75928	4.49188	5.22448	0.0331252	0.0045073	0.123313	0.0400499
chr15	67077486	67077586	6139191	0	+	0.42	(0.419,0.45]	chr15	603934	92	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.29342	4.491875	4.69033	0.0958674	0.0526662	0.189038	0.167062
chr18	12705452	12705552	7020697	0	+	0.45	(0.419,0.45]	chr18	717128	19	INTRON	INTRON	PSMG2	ENSG00000128789.21	ENST00000585331.6:ENST00000586445.5:ENST00000590217.5:ENST00000586587.1:ENST00000317615.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.29342	4.491875	4.69033	0.0958674	0.0526662	0.189038	0.167062
chr21	15470757	15470857	7642064	0	-	0.45	(0.419,0.45]	chr21	799221	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ENSG00000229425	ENSG00000229425.4	ENST00000634644.1:ENST00000634708.1:ENST00000654045.1:ENST00000662630.1	lncRNA	lncRNA	lncRNA	lncRNA	0	35	2	4.29342	4.491875	4.69033	0.0958674	0.0526662	0.189038	0.167062
chr11	126206753	126206853	5140208	0	-	0.41	(0.39,0.419]	chr11	499613	2	SS3_PROX	SS3_PROX:INTRON	RPUSD4	ENSG00000165526.9	ENST00000298317.9:ENST00000533628.5:ENST00000526942.5:ENST00000532674.2:ENST00000534393.5:ENST00000530036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	79	2	3.65379	4.49175	5.32971	0.0390381	0.0068472	0.131575	0.052649
chr10	34434825	34434925	4667999	0	-	0.38	(0.36,0.39]	chr10	445511	82	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	2	105	2	3.03688	4.491630000000001	5.9463800000000004	0.0151971	0.0105366	0.084474	0.0691536
chr2	119766579	119766679	883657	0	+	0.33	(0.29,0.33]	chr2	100098	58	INTRON	INTRON	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000460162.1:ENST00000420482.5:ENST00000460289.5:ENST00000488279.6:ENST00000485247.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	100	2	2.98129	4.49145	6.00161	0.0105264	0.00923185	0.0691044	0.0644666
chr17	80893048	80893127	6812407	0	+	0.670886	(0.58,1]	chr17	687924	2	SS5_PROX	SS5_PROX:INTRON	RPTOR	ENSG00000141564.15	ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	69	2	3.72143	4.491405	5.26138	0.021217	0.00366718	0.0996078	0.0346803
chr1	245798541	245798641	698757	0	-	0.5	(0.485,0.523]	chr1	82352	97	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000490322.1:ENST00000493441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	91	2	3.25002	4.491265	5.73251	0.033374	0.00184599	0.124113	0.0217471
chr16	75234388	75234435	6644450	0	-	0.574468	(0.523,0.58]	chr16	664406	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000566982.1:ENST00000563038.5:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	198	2	4.35334	4.4911650000000005	4.62899	0.0048052599999999996	3.98321e-4	0.0452736	0.00743377
chr17	57544005	57544105	6762655	0	+	0.43	(0.419,0.45]	chr17	682152	139	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1:ENST00000674898.1:ENST00000674574.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	219	2	4.10037	4.491149999999999	4.88193	0.0104624	3.11292e-4	0.0689259	0.00624487
chr16	89913330	89913429	6526309	0	+	0.59596	(0.58,1]	chr16	647715	2	UTR3	UTR3:UTR5:EXON_MRNA:INTRON	TCF25:ENSG00000267048:MC1R	ENSG00000141002.20:ENSG00000267048.1:ENSG00000258839.4	ENST00000640279.1:ENST00000570217.1:ENST00000539976.1:ENST00000555427.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay	1	78	2	4.28568	4.49039	4.6951	0.0521567	7.30957e-4	0.148503	0.0113963
chr17	15468119	15468219	6860116	0	-	0.49	(0.485,0.523]	chr17	695071	6	INTRON	INTRON	TVP23C-CDRT4:CDRT4	ENSG00000259024.6:ENSG00000239704.11	ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	74	2	3.46766	4.49028	5.5129	0.0229047	0.0089247	0.102982	0.0620271
chr2	62772134	62772233	814621	0	+	0.494949	(0.485,0.523]	chr2	92095	1	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000449820.5:ENST00000426940.5:ENST00000413434.5:ENST00000405482.5:ENST00000494958.1:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	74	2	3.46766	4.49028	5.5129	0.0229047	0.0089247	0.102982	0.0620271
chr12	11162691	11162791	5372537	0	-	0.51	(0.485,0.523]	chr12	526881	31	INTRON	INTRON	ENSG00000275778:PRH1:TAS2R14	ENSG00000275778.2:ENSG00000231887.8:ENSG00000212127.6	ENST00000536668.2:ENST00000535024.6:ENST00000541977.5:ENST00000381852.4:ENST00000546265.1:ENST00000541175.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	74	2	3.4289	4.48972	5.55054	0.0215787	0.00977282	0.100612	0.0664239
chr2	87475158	87475256	847393	0	+	0.632653	(0.58,1]	chr2	95712	19	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000414030.6	lncRNA	lncRNA	lncRNA	lncRNA	1	87	2	2.56085	4.489555	6.41826	0.0803939	1.27804e-4	0.177452	0.00328053
chr5	1464235	1464335	2609365	0	-	0.67	(0.58,1]	chr5	259789	4	SS3_PROX	SS3_PROX:INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000503252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	132	2	3.52028	4.4895	5.45872	0.00682545	0.00211999	0.0548967	0.0239744
chr2	120043109	120043209	886179	0	+	0.4	(0.39,0.419]	chr2	100280	6	INTRON	INTRON	EPB41L5	ENSG00000115109.14	ENST00000263713.10:ENST00000443902.6:ENST00000331393.8:ENST00000443124.5:ENST00000452780.1:ENST00000466241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	95	2	2.86613	4.489345	6.11256	0.0665161	0.00108325	0.162469	0.0149525
chr14	103104476	103104563	5921860	0	+	0.724138	(0.58,1]	chr14	579214	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	174	2	4.42424	4.48914	4.55404	0.00256182	3.19972e-4	0.0320805	0.00635576
chr3	23841887	23841987	1431151	0	+	0.4	(0.39,0.419]	chr3	152792	300	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	130	2	2.45525	4.48881	6.52237	0.0675229	3.69587e-4	0.163734	0.00704866
chr10	61952704	61952804	4491088	0	+	0.35	(0.33,0.36]	chr10	429664	119	INTRON	INTRON	ARID5B	ENSG00000150347.17	ENST00000644638.1:ENST00000681100.1:ENST00000279873.12	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.40703	4.48869	4.57035	0.0945416	0.0390931	0.188571	0.142605
chr15	42588132	42588232	6089036	0	+	0.34	(0.33,0.36]	chr15	599113	21	INTRON	INTRON	STARD9	ENSG00000159433.12	ENST00000290607.12:ENST00000564158.5:ENST00000563872.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.40703	4.48869	4.57035	0.0945416	0.0390931	0.188571	0.142605
chr19	37972190	37972290	7254919	0	+	0.35	(0.33,0.36]	chr19	743663	391	INTRON	INTRON	SIPA1L3	ENSG00000105738.11	ENST00000222345.11:ENST00000476317.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.40703	4.48869	4.57035	0.0945416	0.0390931	0.188571	0.142605
chr2	239276880	239276980	1391477	0	-	0.57	(0.523,0.58]	chr2	148740	253	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	119	2	2.80355	4.48869	6.17383	0.00931283	0.00760615	0.0644067	0.0579698
chr3	28278538	28278637	1432617	0	+	0.353535	(0.33,0.36]	chr3	152954	148	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2:ENST00000396610.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.40703	4.48869	4.57035	0.0945416	0.0390931	0.188571	0.142605
chr9	77941939	77942039	4320954	0	-	0.34	(0.33,0.36]	chr9	412907	192	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.40703	4.48869	4.57035	0.0945416	0.0390931	0.188571	0.142605
chr13	75391590	75391690	5727100	0	-	0.44	(0.419,0.45]	chr13	561722	144	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	3.65526	4.488605	5.32195	0.0431627	0.00712959	0.138403	0.0541241
chr2	36535264	36535363	759450	0	+	0.383838	(0.36,0.39]	chr2	88048	59	INTRON	INTRON	CRIM1	ENSG00000150938.10	ENST00000280527.7	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.09186	4.488429999999999	4.885	0.0697729	0.0687088	0.193274	0.167185
chr21	17574797	17574897	7600495	0	+	0.38	(0.36,0.39]	chr21	794146	48	INTRON	INTRON	CXADR	ENSG00000154639.19	ENST00000400169.1	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.09186	4.488429999999999	4.885	0.0697729	0.0687088	0.193274	0.167185
chr4	1315700	1315800	1995192	0	+	0.68	(0.58,1]	chr4	203251	1	SS5_PROX	SS5_PROX:INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000513301.5:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000512842.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	91	2	3.77454	4.488385	5.20223	0.00981158	0.00411607	0.0668871	0.0374453
chr12	7156178	7156278	5167911	0	+	0.67	(0.58,1]	chr12	502928	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000537408.1:ENST00000535313.2:ENST00000331148.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	87	2	3.61485	4.48819	5.36153	0.0133763	0.00273899	0.0790342	0.028553
chr16	16159381	16159481	6556449	0	-	0.59	(0.58,1]	chr16	653068	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	128	2	2.37818	4.488155	6.59813	0.0160476	0.00158605	0.0896435	0.0245893
chr14	68900861	68900901	5999348	0	-	0.575	(0.523,0.58]	chr14	588707	1	UTR3	UTR3:EXON_MRNA:INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.13061	4.48815	4.84569	0.0610722	0.0533354	0.167062	0.158506
chr16	81687789	81687889	6510189	0	+	0.56	(0.523,0.58]	chr16	645979	88	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.13061	4.48815	4.84569	0.0610722	0.0533354	0.167062	0.158506
chr17	345116	345215	6821740	0	-	0.535354	(0.523,0.58]	chr17	689629	38	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000577079.5:ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.13061	4.48815	4.84569	0.0610722	0.0533354	0.167062	0.158506
chr19	4493402	4493502	7193770	0	+	0.56	(0.523,0.58]	chr19	732771	3	SS3_PROX	SS3_PROX:INTRON	HDGFL2	ENSG00000167674.15	ENST00000616600.5:ENST00000621835.4:ENST00000589486.5:ENST00000615225.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.13061	4.48815	4.84569	0.0610722	0.0533354	0.167062	0.158506
chr20	36860766	36860866	7557109	0	-	0.53	(0.523,0.58]	chr20	789159	10	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.13061	4.48815	4.84569	0.0610722	0.0533354	0.167062	0.158506
chr7	158921586	158921683	3523207	0	+	0.56701	(0.523,0.58]	chr7	340299	24	INTRON	INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.13061	4.48815	4.84569	0.0610722	0.0533354	0.167062	0.158506
chr9	134353207	134353307	4260955	0	+	0.57	(0.523,0.58]	chr9	406311	262	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.13061	4.48815	4.84569	0.0610722	0.0533354	0.167062	0.158506
chr3	93971782	93971880	1853160	0	-	0.255102	[0,0.29]	chr3	189053	27	INTRON	INTRON	PROS1	ENSG00000184500.16	ENST00000394236.9:ENST00000648853.1:ENST00000650591.1:ENST00000348974.5:ENST00000647936.1:ENST00000407433.6:ENST00000649103.1:ENST00000472684.2:ENST00000648721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	84	2	3.26148	4.48796	5.71444	0.0266041	0.00157654	0.111446	0.0195664
chr14	91219743	91219842	5899553	0	+	0.525253	(0.523,0.58]	chr14	576431	29	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000522816.1:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	78	2	2.98158	4.487945	5.99431	0.0258432	0.0104033	0.116361	0.0686837
chr11	61273292	61273316	5041309	0	-	0.583333	(0.58,1]	chr11	488760	1	CDS	CDS:UTR3:UTR5:EXON_MRNA	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10:ENST00000535710.1:ENST00000398808.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	97	2	2.6194	4.48793	6.35646	0.0202577	0.00264106	0.102015	0.0325876
chr2	160406963	160407063	1292615	0	-	0.49	(0.485,0.523]	chr2	138792	1	SS5_PROX	SS5_PROX:INTRON	RBMS1	ENSG00000153250.21	ENST00000348849.8:ENST00000474820.5:ENST00000409289.6:ENST00000409075.5:ENST00000409972.5:ENST00000491781.5:ENST00000428519.1:ENST00000477486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	75	2	3.21778	4.48781	5.75784	0.0157761	0.0154142	0.0884237	0.0849828
chr21	45499944	45500043	7631304	0	+	0.515152	(0.485,0.523]	chr21	797812	19	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.21778	4.48781	5.75784	0.0157761	0.0154142	0.0884237	0.0849828
chr4	884685	884785	2178449	0	-	0.55	(0.523,0.58]	chr4	220625	2	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	3.90605	4.48781	5.06957	0.0448011	0.00295607	0.140478	0.0300958
chr17	7110371	7110469	6847737	0	-	0.591837	(0.58,1]	chr17	693423	11	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	514	2	4.05144	4.487675	4.92391	0.00100084	8.60683e-6	0.0190404	4.61226e-4
chr1	149528953	149529047	238898	0	+	0.404255	(0.39,0.419]	chr1	26790	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF19	ENSG00000271383.8	ENST00000651566.2:ENST00000611931.4:ENST00000612881.4:ENST00000369227.7	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.09132	4.487489999999999	4.88366	0.0707789	0.0689553	0.193274	0.168159
chr2	210080176	210080276	1365522	0	-	0.4	(0.39,0.419]	chr2	145381	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	KANSL1L	ENSG00000144445.17	ENST00000281772.14:ENST00000418791.5:ENST00000452086.5:ENST00000457374.5:ENST00000428655.5:ENST00000460256.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	36	2	4.09132	4.487489999999999	4.88366	0.0707789	0.0689553	0.193274	0.168159
chr4	186284560	186284660	2173843	0	+	0.41	(0.39,0.419]	chr4	220293	3	SS5_PROX	SS5_PROX:INTRON	F11	ENSG00000088926.14	ENST00000403665.7:ENST00000264692.8	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.09132	4.487489999999999	4.88366	0.0707789	0.0689553	0.193274	0.168159
chr7	6699650	6699746	3542709	0	-	0.395833	(0.39,0.419]	chr7	342314	15	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000404360.5:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.09132	4.487489999999999	4.88366	0.0707789	0.0689553	0.193274	0.168159
chr7	67090592	67090691	3384936	0	+	0.393939	(0.39,0.419]	chr7	326589	67	INTRON	INTRON	TYW1	ENSG00000198874.14	ENST00000359626.10:ENST00000361660.8:ENST00000495971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	36	2	4.09132	4.487489999999999	4.88366	0.0707789	0.0689553	0.193274	0.168159
chr7	116767949	116768048	3450355	0	+	0.292929	(0.29,0.33]	chr7	334209	43	INTRON	INTRON	MET	ENSG00000105976.16	ENST00000318493.11:ENST00000397752.8:ENST00000422097.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.12201	4.48743	4.85285	0.0567079	0.0564091	0.171933	0.154343
chr6	158572019	158572119	3064015	0	+	0.62	(0.58,1]	chr6	297687	114	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	2	96	2	2.66286	4.487395	6.31193	0.0183006	0.00289626	0.0958973	0.03418
chr6	15391937	15392037	2857967	0	+	0.53	(0.523,0.58]	chr6	279184	173	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	3.31719	4.48734	5.65749	0.0182707	0.0124719	0.0921579	0.0765738
chr2	235509136	235509236	1062687	0	+	0.29	[0,0.29]	chr2	115651	139	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.35679	4.48714	4.61749	0.061376	0.0332741	0.158506	0.133139
chr20	47287974	47288069	7570198	0	-	0.378947	(0.36,0.39]	chr20	791048	3	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	146	2	2.31684	4.486945	6.65705	0.0249685	0.00462176	0.114418	0.0442699
chr14	103451027	103451124	5922759	0	+	0.525773	(0.523,0.58]	chr14	579379	17	INTRON	INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000676475.1:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000561164.2:ENST00000558223.6:ENST00000559328.6:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000678423.1:ENST00000560603.6:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000561225.1:ENST00000678091.1:ENST00000561071.5:ENST00000558698.5:ENST00000559268.5:ENST00000560731.5:ENST00000676745.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	90	2	3.16507	4.4869	5.80873	0.0382777	0.00145893	0.131324	0.0184991
chr17	672003	672102	6823909	0	-	0.535354	(0.523,0.58]	chr17	689839	8	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000679680.1:ENST00000576019.6:ENST00000679961.1:ENST00000681120.1:ENST00000575207.6:ENST00000680660.1:ENST00000680970.1:ENST00000680241.1:ENST00000681423.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	75	2	3.75634	4.486805	5.21727	0.0361597	0.00434055	0.127853	0.0390182
chr14	94308266	94308363	6046255	0	-	0.42268	(0.419,0.45]	chr14	593049	17	INTRON	INTRON	SERPINA6	ENSG00000170099.6	ENST00000341584.4:ENST00000555056.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	97	2	3.11154	4.48669	5.86184	0.0490796	0.00223565	0.146142	0.024843
chr10	103721872	103721972	4757319	0	-	0.51	(0.485,0.523]	chr10	454791	284	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.12717	4.4866399999999995	4.84611	0.0608067	0.0545434	0.167824	0.158506
chr17	4853817	4853917	6672091	0	+	0.52	(0.485,0.523]	chr17	668609	198	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.12717	4.4866399999999995	4.84611	0.0608067	0.0545434	0.167824	0.158506
chr11	18010736	18010833	5015366	0	-	0.42268	(0.419,0.45]	chr11	484704	2	INTRON	INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528200.5:ENST00000532265.5:ENST00000529728.5:ENST00000530613.5:ENST00000532389.5:ENST00000530925.5:ENST00000533328.5:ENST00000532212.5:ENST00000524716.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	108	2	2.71246	4.486219999999999	6.25998	0.0223142	0.0106277	0.108193	0.0698136
chr20	38421955	38422050	7561041	0	-	0.473684	(0.45,0.485]	chr20	789757	11	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000667188.1:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000671309.1:ENST00000669405.1:ENST00000666806.1:ENST00000657665.1:ENST00000667282.1:ENST00000655311.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000659102.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000663955.1:ENST00000664964.1:ENST00000658324.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000662572.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	102	2	3.22324	4.486185	5.74913	0.017574	0.00604452	0.0906595	0.048565
chr9	123404888	123404987	4396609	0	-	0.555556	(0.523,0.58]	chr9	419589	10	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	108	2	2.43762	4.486129999999999	6.53464	0.0343548	0.00395533	0.134666	0.0406092
chr16	50621401	50621501	6452142	0	+	0.64	(0.58,1]	chr16	639913	4	SS3_PROX	SS3_PROX:INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	2	173	2	3.87867	4.485685	5.0927	0.00797934	5.54188e-5	0.0596361	0.00176778
chr16	16105199	16105299	6407576	0	+	0.46	(0.45,0.485]	chr16	633130	4	SS3_PROX	SS3_PROX:INTRON	ABCC1	ENSG00000103222.20	ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000575422.5:ENST00000576557.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	155	2	2.3538	4.485525	6.61725	0.017414	0.00395394	0.0928044	0.0406092
chr10	48042127	48042226	4680787	0	-	0.464646	(0.45,0.485]	chr10	446508	27	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	5	158	2	2.71106	4.484965	6.25887	0.00748565	0.00726246	0.0576451	0.0547491
chr1	12594192	12594291	402545	0	-	0.464646	(0.45,0.485]	chr1	46222	132	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	76	2	3.22036	4.484745	5.74913	0.017574	0.016408	0.0911382	0.0906595
chr8	22388259	22388358	3770231	0	+	0.555556	(0.523,0.58]	chr8	362727	84	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	8	591	2	4.14896	4.484745	4.82053	7.86408e-4	7.91933e-5	0.0166603	0.00229472
chr11	63871068	63871168	4867124	0	+	0.35	(0.33,0.36]	chr11	466776	13	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5:ENST00000543674.1:ENST00000540169.5	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	3.80984	4.4845749999999995	5.15931	0.043896	0.0044449	0.139792	0.0396254
chr3	13206324	13206424	1691205	0	-	0.42	(0.419,0.45]	chr3	176566	418	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	2	106	2	2.97682	4.48431	5.9918	0.0162379	0.0125682	0.0873195	0.076738700000000007
chr19	36213756	36213847	7367432	0	-	0.582418	(0.58,1]	chr19	763876	5	INTRON	INTRON	ZNF565	ENSG00000196357.12	ENST00000304116.10:ENST00000355114.9:ENST00000392173.6:ENST00000591473.1:ENST00000587803.1:ENST00000586648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	76	2	2.84993	4.48429	6.11865	0.0297842	0.00429384	0.126591	0.042386
chr1	225874187	225874287	674384	0	-	0.47	(0.45,0.485]	chr1	79318	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TMEM63A	ENSG00000196187.12	ENST00000366835.8:ENST00000436966.1:ENST00000487817.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.32491	4.484185	4.64346	0.0850039	0.0418883	0.181766	0.149021
chr1	228143328	228143427	358017	0	+	0.454545	(0.45,0.485]	chr1	40401	11	INTRON	INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.32491	4.484185	4.64346	0.0850039	0.0418883	0.181766	0.149021
chr17	37315654	37315754	6892391	0	-	0.47	(0.45,0.485]	chr17	699918	160	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.32491	4.484185	4.64346	0.0850039	0.0418883	0.181766	0.149021
chr2	15463474	15463573	1092978	0	-	0.474747	(0.45,0.485]	chr2	119037	13	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.32491	4.484185	4.64346	0.0850039	0.0418883	0.181766	0.149021
chr2	47335521	47335620	1141961	0	-	0.474747	(0.45,0.485]	chr2	124898	21	INTRON	INTRON	EPCAM-DT	ENSG00000234690.7	ENST00000448713.5:ENST00000441997.5:ENST00000419035.1:ENST00000450550.5:ENST00000413185.2	lncRNA	lncRNA	lncRNA	lncRNA	0	34	2	4.32491	4.484185	4.64346	0.0850039	0.0418883	0.181766	0.149021
chr6	10830096	10830195	2851935	0	+	0.484848	(0.45,0.485]	chr6	278858	10	INTRON	INTRON	TMEM14B	ENSG00000137210.14	ENST00000463448.5:ENST00000460341.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	34	2	4.32491	4.484185	4.64346	0.0850039	0.0418883	0.181766	0.149021
chr7	212469	212569	3305779	0	+	0.46	(0.45,0.485]	chr7	320161	31	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.32491	4.484185	4.64346	0.0850039	0.0418883	0.181766	0.149021
chr16	16039781	16039881	6406907	0	+	0.57	(0.523,0.58]	chr16	633041	28	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	99	2	2.92019	4.484055	6.04792	0.0117692	0.00948306	0.0743709	0.0656057
chr6	5677907	5678007	2836555	0	+	0.4	(0.39,0.419]	chr6	277888	642	INTRON	INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000648580.1:ENST00000274680.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	80	2	3.77224	4.484014999999999	5.19579	0.0469937	0.00517927	0.143232	0.043878
chrX	53379705	53379804	8044476	0	-	0.414141	(0.39,0.419]	chrX	839538	57	UTR3	UTR3:EXON_MRNA	SMC1A	ENSG00000072501.19	ENST00000375340.10:ENST00000322213.9:ENST00000675504.1	protein_coding	protein_coding	protein_coding	protein_coding	1	95	2	2.80031	4.48379	6.16727	0.0728013	9.41833e-4	0.169397	0.0135546
chr17	14397971	14398071	6683516	0	+	0.32	(0.29,0.33]	chr17	670768	4	INTRON	INTRON	ENSG00000230647	ENSG00000230647.2	ENST00000436469.1:ENST00000655690.1	lncRNA	lncRNA	lncRNA	lncRNA	3	128	2	3.3027	4.483725	5.66475	0.0164475	0.0026641	0.0877632	0.0280799
chr9	132632291	132632391	4424529	0	-	0.46	(0.45,0.485]	chr9	422371	2	SS3_PROX	SS3_PROX:INTRON	DDX31	ENSG00000125485.18	ENST00000372159.8	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.46316	4.48369	5.50422	0.0257993	0.00952494	0.109555	0.0650078
chr5	32157464	32157564	2630489	0	-	0.45	(0.419,0.45]	chr5	261026	132	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	302	2	3.43203	4.483595	5.53516	0.015636	4.84065e-5	0.0850479	0.00160761
chrX	65515273	65515373	8055026	0	-	0.45	(0.419,0.45]	chrX	840751	3	SS3_PROX	SS3_PROX:INTRON	LAS1L	ENSG00000001497.18	ENST00000677056.1:ENST00000677969.1:ENST00000374811.8:ENST00000374807.9:ENST00000677834.1:ENST00000484069.1:ENST00000374804.9:ENST00000677986.1:ENST00000677087.1:ENST00000679056.1:ENST00000679261.1:ENST00000678074.1:ENST00000678705.1:ENST00000679277.1:ENST00000677154.1:ENST00000678547.1:ENST00000678956.1:ENST00000679116.1:ENST00000678848.1:ENST00000678173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	79	2	3.56166	4.4832149999999995	5.40477	0.0385125	0.00882182	0.131324	0.061625
chr7	140813791	140813891	3727711	0	-	0.35	(0.33,0.36]	chr7	358048	44	INTRON	INTRON	BRAF	ENSG00000157764.14	ENST00000496384.7:ENST00000644969.2:ENST00000644120.1:ENST00000646891.1:ENST00000644905.1:ENST00000642228.1:ENST00000288602.11:ENST00000646730.1:ENST00000497784.2:ENST00000642272.1:ENST00000642808.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	92	2	2.92813	4.482855	6.03758	0.0577575	0.00113952	0.154343	0.0155794
chrX	2879865	2879963	7831334	0	+	0.357143	(0.33,0.36]	chrX	822236	22	INTRON	INTRON	GYG2	ENSG00000056998.20	ENST00000381163.7:ENST00000381161.5:ENST00000398806.8:ENST00000353656.10:ENST00000639373.1:ENST00000381157.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	94	2	2.68323	4.48263	6.28203	0.0814187	6.00348e-4	0.178482	0.00994732
chr1	12586038	12586137	402463	0	-	0.646465	(0.58,1]	chr1	46222	50	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	235	2	3.97408	4.482469999999999	4.99086	0.00259424	7.78776e-5	0.0322419	0.00227427
chr2	54562485	54562585	799339	0	+	0.36	(0.33,0.36]	chr2	90800	32	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7:ENST00000333896.5	protein_coding	protein_coding	protein_coding	protein_coding	8	198	2	1.96521	4.482415	6.99962	0.0317352	0.0020365	0.128739	0.0283511
chr1	48225295	48225393	120952	0	+	0.459184	(0.45,0.485]	chr1	15165	1	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	78	2	3.8525	4.4824	5.1123	0.0458344	0.00372052	0.142336	0.0350519
chr2	233166122	233166222	1058287	0	+	0.71	(0.58,1]	chr2	115120	13	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493078.1:ENST00000472517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	68	2	3.52722	4.4823699999999995	5.43752	0.0156166	0.00611467	0.0849828	0.0489549
chr20	36313704	36313804	7469124	0	+	0.5	(0.485,0.523]	chr20	777805	68	INTRON	INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	3.61303	4.48235	5.35167	0.0294163	0.00630038	0.116079	0.0501647
chr4	141233989	141234077	2136526	0	+	0.511364	(0.485,0.523]	chr4	216975	1	UTR3	UTR3:EXON_MRNA	ZNF330	ENSG00000109445.11	ENST00000262990.9:ENST00000506302.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	122	2	2.58276	4.482125	6.38149	0.0500643	3.18797e-4	0.147892	0.00634142
chr19	46775329	46775419	7391448	0	-	0.644444	(0.58,1]	chr19	767897	6	UTR3	UTR3:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6	protein_coding	protein_coding	protein_coding	protein_coding	7	493	2	4.22717	4.481795	4.73642	0.00147988	6.711e-6	0.023604	3.88516e-4
chr1	17673586	17673686	54947	0	+	0.66	(0.58,1]	chr1	5603	86	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	68	2	3.48503	4.48171	5.47839	0.0145198	0.006811	0.0823104	0.0524379
chr7	47355418	47355518	3587345	0	-	0.6	(0.58,1]	chr7	346030	87	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.48503	4.48171	5.47839	0.0145198	0.006811	0.0823104	0.0524379
chr1	65151417	65151516	158484	0	+	0.414141	(0.39,0.419]	chr1	18050	19	INTRON	INTRON	AK4	ENSG00000162433.15	ENST00000545314.5:ENST00000497030.5:ENST00000470888.6:ENST00000546702.5:ENST00000395334.6:ENST00000327299.8:ENST00000474968.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.20027	4.48142	4.76257	0.0822354	0.0583327	0.179396	0.175217
chr13	113013663	113013762	5655760	0	+	0.414141	(0.39,0.419]	chr13	555138	113	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.20027	4.48142	4.76257	0.0822354	0.0583327	0.179396	0.175217
chr16	85380939	85381039	6516880	0	+	0.4	(0.39,0.419]	chr16	646391	216	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.20027	4.48142	4.76257	0.0822354	0.0583327	0.179396	0.175217
chr20	38030510	38030610	7560550	0	-	0.4	(0.39,0.419]	chr20	789667	110	INTRON	INTRON	TTI1	ENSG00000101407.13	ENST00000373448.6:ENST00000373447.8	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.20027	4.48142	4.76257	0.0822354	0.0583327	0.179396	0.175217
chrX	119237578	119237675	7944001	0	+	0.402062	(0.39,0.419]	chrX	831205	5	INTRON	INTRON	PGRMC1	ENSG00000101856.10	ENST00000535419.2:ENST00000217971.8	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.20027	4.48142	4.76257	0.0822354	0.0583327	0.179396	0.175217
chr21	44459408	44459508	7628070	0	+	0.6	(0.58,1]	chr21	797416	21	UTR3	UTR3:EXON_MRNA	LRRC3	ENSG00000160233.8	ENST00000291592.6	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	2.38295	4.48121	6.57947	0.0730701	0.00165065	0.199669	0.0250898
chr11	70796143	70796243	5062243	0	-	0.59	(0.58,1]	chr11	492701	783	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	72	2	3.03676	4.48102	5.92528	0.0198789	0.0062948	0.100864	0.0523832
chr17	38875108	38875207	6729622	0	+	0.656566	(0.58,1]	chr17	676433	6	INTRON	INTRON	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000585841.5:ENST00000318008.11:ENST00000443937.7:ENST00000584106.1:ENST00000435347.7:ENST00000419929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	72	2	3.03676	4.48102	5.92528	0.0198789	0.0062948	0.100864	0.0523832
chr6	43553503	43553603	3136824	0	-	0.42	(0.419,0.45]	chr6	306281	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	XPO5	ENSG00000124571.18	ENST00000265351.12:ENST00000496341.6:ENST00000424378.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	96	2	2.97363	4.480840000000001	5.98805	0.0596114	0.00164584	0.157889	0.0202325
chr3	65419037	65419137	1809640	0	-	0.5	(0.485,0.523]	chr3	187193	172	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5	protein_coding	protein_coding	protein_coding	protein_coding	4	314	2	4.05386	4.48076	4.90766	0.00162238	2.95645e-4	0.0249683	0.00601525
chr1	32649702	32649801	438830	0	-	0.646465	(0.58,1]	chr1	52320	146	INTRON	INTRON	ZBTB8OS	ENSG00000176261.16	ENST00000341885.6:ENST00000468695.6:ENST00000492007.6:ENST00000373506.8:ENST00000436661.6:ENST00000473294.7:ENST00000373501.6:ENST00000476493.6:ENST00000465588.2:ENST00000483138.5:ENST00000479075.6:ENST00000466361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	175	2	4.47001	4.48074	4.49147	0.0022148	4.15967e-4	0.0295806	0.00768537
chr6	158566425	158566525	3063959	0	+	0.57	(0.523,0.58]	chr6	297687	58	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	2	137	2	3.2628	4.48057	5.69834	0.0160973	0.00194036	0.0869879	0.0225083
chr3	149969406	149969496	1942208	0	-	0.488889	(0.485,0.523]	chr3	197596	5	INTRON	INTRON	PFN2	ENSG00000070087.15	ENST00000649949.1:ENST00000452853.6:ENST00000239940.12:ENST00000423691.2:ENST00000481767.5:ENST00000460404.5:ENST00000468323.5:ENST00000494827.5:ENST00000490975.1:ENST00000497148.5:ENST00000498169.1:ENST00000475518.5:ENST00000481275.5:ENST00000498307.5:ENST00000489155.1:ENST00000461930.1:ENST00000461868.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	99	2	2.93924	4.48052	6.0218	0.0113973	0.00985907	0.0722395	0.0670775
chr7	139704942	139705042	3723195	0	-	0.59	(0.58,1]	chr7	357498	729	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	4	271	2	4.16266	4.480365	4.79807	0.0011255	1.21049e-4	0.0202727	0.00316859
chr5	150507880	150507963	2565089	0	+	0.626506	(0.58,1]	chr5	254948	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDST1	ENSG00000070614.15	ENST00000522491.1:ENST00000519157.1:ENST00000524161.1:ENST00000523767.5:ENST00000518299.1:ENST00000518346.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	73	2	2.97713	4.480175	5.98322	0.0226795	0.00562007	0.108193	0.0493906
chr19	942718	942818	7185273	0	+	0.59	(0.58,1]	chr19	730741	96	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	111	2	2.58187	4.480045	6.37822	0.0133635	0.00252415	0.0801608	0.031696
chr14	70027643	70027743	5872659	0	+	0.42	(0.419,0.45]	chr14	573363	38	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	0	36	2	4.08324	4.47961	4.87598	0.0768574	0.0727147	0.199502	0.174882
chr1	821311	821411	379723	0	-	0.53	(0.523,0.58]	chr1	42663	428	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000634337.2:ENST00000635509.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	34	2	4.23973	4.479475	4.71922	0.0721601	0.0444247	0.168159	0.153511
chr1	165897023	165897118	263178	0	+	0.557895	(0.523,0.58]	chr1	31077	3	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1:ENST00000462329.5:ENST00000464197.5:ENST00000469256.6:ENST00000470820.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.23973	4.479475	4.71922	0.0721601	0.0444247	0.168159	0.153511
chr11	5363205	5363305	4976515	0	-	0.53	(0.523,0.58]	chr11	481873	159	INTRON	INTRON	ENSG00000239920:OR51B5	ENSG00000239920.2:ENSG00000167355.8	ENST00000380259.7:ENST00000420726.6:ENST00000420465.6:ENST00000415970.6:ENST00000418729.1	protein_coding	non_stop_decay	protein_coding	non_stop_decay:nonsense_mediated_decay:processed_transcript	0	34	2	4.23973	4.479475	4.71922	0.0721601	0.0444247	0.168159	0.153511
chr11	64270837	64270928	5049346	0	-	0.56044	(0.523,0.58]	chr11	490331	1	INTRON	INTRON	BAD	ENSG00000002330.14	ENST00000309032.8:ENST00000394532.7:ENST00000544785.1:ENST00000394531.3:ENST00000493798.1:ENST00000492141.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.23973	4.479475	4.71922	0.0721601	0.0444247	0.168159	0.153511
chr11	70797342	70797442	5062255	0	-	0.53	(0.523,0.58]	chr11	492701	795	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.23973	4.479475	4.71922	0.0721601	0.0444247	0.168159	0.153511
chr11	70810069	70810169	5062384	0	-	0.55	(0.523,0.58]	chr11	492713	25	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.23973	4.479475	4.71922	0.0721601	0.0444247	0.168159	0.153511
chr16	21495692	21495792	6564593	0	-	0.55	(0.523,0.58]	chr16	654775	77	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522480.5:ENST00000522841.6:ENST00000437413.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	34	2	4.23973	4.479475	4.71922	0.0721601	0.0444247	0.168159	0.153511
chr16	81633179	81633279	6509629	0	+	0.57	(0.523,0.58]	chr16	645926	111	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.23973	4.479475	4.71922	0.0721601	0.0444247	0.168159	0.153511
chr17	82264591	82264690	6988815	0	-	0.525253	(0.523,0.58]	chr17	714752	87	INTRON	INTRON	CSNK1D	ENSG00000141551.15	ENST00000398519.9:ENST00000314028.11:ENST00000581241.5:ENST00000392334.6:ENST00000403276.7:ENST00000582844.5:ENST00000580446.1:ENST00000581660.5:ENST00000578194.5:ENST00000579316.5:ENST00000584472.5:ENST00000580061.5:ENST00000585026.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.23973	4.479475	4.71922	0.0721601	0.0444247	0.168159	0.153511
chr2	27208091	27208190	1111432	0	-	0.565657	(0.523,0.58]	chr2	121316	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC5A6	ENSG00000138074.15	ENST00000310574.8:ENST00000488743.6:ENST00000408041.5:ENST00000445802.5:ENST00000412471.5:ENST00000401463.5:ENST00000432106.5:ENST00000426119.5:ENST00000414408.5:ENST00000428518.5:ENST00000430186.5:ENST00000442731.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.23973	4.479475	4.71922	0.0721601	0.0444247	0.168159	0.153511
chr2	233457621	233457719	1060688	0	+	0.530612	(0.523,0.58]	chr2	115471	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DGKD	ENSG00000077044.11	ENST00000264057.7:ENST00000409813.7:ENST00000490764.5:ENST00000430834.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.23973	4.479475	4.71922	0.0721601	0.0444247	0.168159	0.153511
chr22	42190383	42190483	7818679	0	-	0.54	(0.523,0.58]	chr22	820124	103	INTRON	INTRON	TCF20	ENSG00000100207.21	ENST00000359486.8:ENST00000677622.1:ENST00000683686.1:ENST00000335626.8:ENST00000404876.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.23973	4.479475	4.71922	0.0721601	0.0444247	0.168159	0.153511
chr3	73005738	73005837	1502817	0	+	0.545455	(0.523,0.58]	chr3	160766	72	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000495566.1:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.23973	4.479475	4.71922	0.0721601	0.0444247	0.168159	0.153511
chrX	48973722	48973816	8041062	0	-	0.542553	(0.523,0.58]	chrX	838826	1	UTR3	UTR3:EXON_MRNA	GRIPAP1	ENSG00000068400.13	ENST00000619149.4:ENST00000376423.8:ENST00000622599.4:ENST00000593475.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.23973	4.479475	4.71922	0.0721601	0.0444247	0.168159	0.153511
chr1	52915030	52915130	485582	0	-	0.61	(0.58,1]	chr1	57728	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ECHDC2	ENSG00000121310.17	ENST00000536120.5:ENST00000371522.9:ENST00000460612.5:ENST00000371520.5:ENST00000358358.9:ENST00000476477.6:ENST00000467988.2:ENST00000488268.5:ENST00000544365.5:ENST00000495920.5:ENST00000544531.5:ENST00000480312.6:ENST00000542552.1:ENST00000474789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	71	2	3.09402	4.479465	5.86491	0.0174733	0.00707578	0.0928044	0.0558168
chr17	72560617	72560717	6963917	0	-	0.65	(0.58,1]	chr17	710389	262	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	2	170	2	4.01288	4.478895	4.94491	0.00608214	9.06847e-5	0.0515813	0.00254217
chr17	30163362	30163462	6710547	0	+	0.39	(0.36,0.39]	chr17	673854	2	SS5_PROX	SS5_PROX:INTRON	NSRP1	ENSG00000126653.18	ENST00000540900.7:ENST00000612959.4:ENST00000247026.10:ENST00000577289.6:ENST00000584154.5:ENST00000394826.8:ENST00000475652.5:ENST00000584317.5:ENST00000585881.5:ENST00000467446.6:ENST00000580103.6:ENST00000581048.5:ENST00000588614.1:ENST00000589608.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.39677	4.478765	4.56076	0.103289	0.0422707	0.197541	0.149195
chr4	4531097	4531197	2185907	0	-	0.38	(0.36,0.39]	chr4	221849	590	INTRON	INTRON	STX18	ENSG00000168818.10	ENST00000505286.5:ENST00000306200.7:ENST00000507908.5:ENST00000512780.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.39677	4.478765	4.56076	0.103289	0.0422707	0.197541	0.149195
chr7	6475771	6475869	3542506	0	-	0.377551	(0.36,0.39]	chr7	342286	11	INTRON	INTRON	DAGLB:KDELR2	ENSG00000164535.15:ENSG00000136240.10	ENST00000436575.5:ENST00000463747.1:ENST00000258739.9:ENST00000490996.1:ENST00000382267.3:ENST00000462052.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.39677	4.478765	4.56076	0.103289	0.0422707	0.197541	0.149195
chr18	5967502	5967602	7109382	0	-	0.31	(0.29,0.33]	chr18	723814	70	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000400105.6:ENST00000317931.12	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.2311	4.478725	4.72635	0.0672935	0.0471437	0.163263	0.156915
chr19	23656625	23656721	7360065	0	-	0.3125	(0.29,0.33]	chr19	762833	21	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ZNF675	ENSG00000197372.10	ENST00000601935.5:ENST00000600313.5:ENST00000596211.5:ENST00000359788.9:ENST00000600299.1:ENST00000599535.1:ENST00000597074.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.2311	4.478725	4.72635	0.0672935	0.0471437	0.163263	0.156915
chr3	78704524	78704623	1834543	0	-	0.292929	(0.29,0.33]	chr3	188581	108	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5:ENST00000484514.1:ENST00000488735.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.2311	4.478725	4.72635	0.0672935	0.0471437	0.163263	0.156915
chr3	125298269	125298369	1902000	0	-	0.33	(0.29,0.33]	chr3	192962	56	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.2311	4.478725	4.72635	0.0672935	0.0471437	0.163263	0.156915
chr11	70584929	70585029	5060122	0	-	0.64	(0.58,1]	chr11	492663	816	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	82	2	3.3216	4.478515	5.63543	0.0230709	0.00131165	0.102982	0.0171898
chr14	89248028	89248127	6026578	0	-	0.484848	(0.45,0.485]	chr14	591432	168	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	76	2	3.1756	4.47828	5.78096	0.0180699	0.0166968	0.0953579	0.0884836
chr7	34665624	34665724	3572281	0	-	0.43	(0.419,0.45]	chr7	344517	219	INTRON	INTRON	NPSR1-AS1	ENSG00000197085.11	ENST00000419766.5:ENST00000539747.5:ENST00000439852.5:ENST00000358772.8:ENST00000431669.5	lncRNA	lncRNA	lncRNA	lncRNA	1	79	2	3.1968	4.478275	5.75975	0.0231013	0.0193853	0.102982	0.0994526
chr16	8711036	8711136	6381500	0	+	0.32	(0.29,0.33]	chr16	631147	276	INTRON	INTRON	ABAT	ENSG00000183044.12	ENST00000564714.5:ENST00000268251.13:ENST00000563992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	79	2	3.98725	4.478195	4.96914	0.0481918	0.00251767	0.144601	0.0270146
chr16	67967070	67967167	6610222	0	-	0.556701	(0.523,0.58]	chr16	661575	3	INTRON	INTRON	SLC12A4	ENSG00000124067.17	ENST00000422611.6:ENST00000316341.8:ENST00000572037.5:ENST00000570802.5:ENST00000576616.5:ENST00000573023.6:ENST00000576377.1:ENST00000571299.5:ENST00000572010.5:ENST00000576462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	262	2	4.22191	4.478085	4.73426	0.00230167	3.46341e-4	0.0302623	0.00673458
chr2	38326006	38326106	1123820	0	-	0.4	(0.39,0.419]	chr2	123019	66	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	289	2	4.15181	4.47806	4.80431	0.00273656	6.12798e-4	0.0332414	0.0100929
chr1	822310	822410	379733	0	-	0.52	(0.485,0.523]	chr1	42663	438	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000634337.2:ENST00000635509.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	34	2	4.23628	4.4779599999999995	4.71964	0.0718646	0.045492200000000003	0.168159	0.154539
chr1	94201419	94201519	537900	0	-	0.51	(0.485,0.523]	chr1	62706	3	SS5_PROX	SS5_PROX:INTRON	ARHGAP29	ENSG00000137962.13	ENST00000552844.5:ENST00000260526.11	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.23628	4.4779599999999995	4.71964	0.0718646	0.045492200000000003	0.168159	0.154539
chr10	24407230	24407330	4466584	0	+	0.51	(0.485,0.523]	chr10	427270	258	INTRON	INTRON	KIAA1217	ENSG00000120549.19	ENST00000376462.5:ENST00000376452.7:ENST00000430453.6:ENST00000458595.5:ENST00000376456.8:ENST00000376454.8:ENST00000438429.5:ENST00000696626.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.23628	4.4779599999999995	4.71964	0.0718646	0.045492200000000003	0.168159	0.154539
chr11	70656632	70656732	5060841	0	-	0.5	(0.485,0.523]	chr11	492672	18	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.23628	4.4779599999999995	4.71964	0.0718646	0.045492200000000003	0.168159	0.154539
chr15	67087613	67087713	6139293	0	+	0.49	(0.485,0.523]	chr15	603938	92	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.23628	4.4779599999999995	4.71964	0.0718646	0.045492200000000003	0.168159	0.154539
chr15	85102288	85102388	6175814	0	+	0.51	(0.485,0.523]	chr15	607449	17	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5:ENST00000560789.5:ENST00000557819.6:ENST00000558543.5:ENST00000557954.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.23628	4.4779599999999995	4.71964	0.0718646	0.045492200000000003	0.168159	0.154539
chr17	343319	343419	6821722	0	-	0.52	(0.485,0.523]	chr17	689629	20	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000577079.5:ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.23628	4.4779599999999995	4.71964	0.0718646	0.045492200000000003	0.168159	0.154539
chr17	77375436	77375533	6804117	0	+	0.515464	(0.485,0.523]	chr17	686752	7	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1:ENST00000423034.6:ENST00000590059.5:ENST00000587514.1:ENST00000590586.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.23628	4.4779599999999995	4.71964	0.0718646	0.045492200000000003	0.168159	0.154539
chr2	74885589	74885689	837557	0	+	0.51	(0.485,0.523]	chr2	94671	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HK2	ENSG00000159399.10	ENST00000290573.7:ENST00000409174.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.23628	4.4779599999999995	4.71964	0.0718646	0.045492200000000003	0.168159	0.154539
chr2	239271784	239271884	1391426	0	-	0.49	(0.485,0.523]	chr2	148740	202	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.23628	4.4779599999999995	4.71964	0.0718646	0.045492200000000003	0.168159	0.154539
chr4	48393385	48393483	2040529	0	+	0.510204	(0.485,0.523]	chr4	208485	56	INTRON	INTRON	SLAIN2	ENSG00000109171.15	ENST00000264313.11:ENST00000512093.5:ENST00000505131.1:ENST00000510595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.23628	4.4779599999999995	4.71964	0.0718646	0.045492200000000003	0.168159	0.154539
chr4	146500254	146500354	2336428	0	-	0.49	(0.485,0.523]	chr4	234371	216	INTRON	INTRON	SLC10A7	ENSG00000120519.16	ENST00000432059.6:ENST00000335472.12:ENST00000693222.1:ENST00000507030.5:ENST00000511315.2:ENST00000507560.5:ENST00000685433.1:ENST00000394059.8:ENST00000511374.5:ENST00000513583.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.23628	4.4779599999999995	4.71964	0.0718646	0.045492200000000003	0.168159	0.154539
chr10	96677608	96677708	4741358	0	-	0.4	(0.39,0.419]	chr10	452535	81	INTRON	INTRON	PIK3AP1	ENSG00000155629.15	ENST00000339364.10:ENST00000468783.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.39622	4.477824999999999	4.55943	0.104562	0.042449	0.19835	0.149195
chr3	141268092	141268191	1586590	0	+	0.40404	(0.39,0.419]	chr3	167617	50	INTRON	INTRON	PXYLP1	ENSG00000155893.13	ENST00000505013.5:ENST00000636601.1:ENST00000286353.9:ENST00000514880.5:ENST00000637751.1:ENST00000502783.5:ENST00000393010.6:ENST00000514680.5:ENST00000513528.5:ENST00000637579.1:ENST00000512457.5:ENST00000504264.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.39622	4.477824999999999	4.55943	0.104562	0.042449	0.19835	0.149195
chr6	36039433	36039532	2904412	0	+	0.40404	(0.39,0.419]	chr6	284894	99	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000622903.4:ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5:ENST00000472333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	34	2	4.39622	4.477824999999999	4.55943	0.104562	0.042449	0.19835	0.149195
chr17	75149782	75149879	6970315	0	-	0.494845	(0.485,0.523]	chr17	710830	2	INTRON	INTRON	JPT1	ENSG00000189159.16	ENST00000409753.8:ENST00000476258.5:ENST00000482348.5:ENST00000304834.11:ENST00000356033.8:ENST00000470924.5:ENST00000481647.5:ENST00000580380.1:ENST00000581874.1:ENST00000584079.5:ENST00000465454.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	74	2	3.6472	4.477785	5.30837	0.0314138	0.00579534	0.12069	0.0472203
chr3	78982115	78982215	1837327	0	-	0.47	(0.45,0.485]	chr3	188611	428	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.30591	4.477565	5.64922	0.020599	0.0135996	0.0982852	0.0811697
chr7	128589158	128589257	3473766	0	+	0.484848	(0.45,0.485]	chr7	335604	87	INTRON	INTRON	ENSG00000280828:ENSG00000242588	ENSG00000280828.1:ENSG00000242588.6	ENST00000479267.2:ENST00000605862.5	lncRNA	lncRNA	lncRNA:unprocessed_pseudogene	lncRNA:unprocessed_pseudogene	1	75	2	3.30591	4.477565	5.64922	0.020599	0.0135996	0.0982852	0.0811697
chr6	16620015	16620115	3103039	0	-	0.29	[0,0.29]	chr6	300871	35	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6:ENST00000495178.1:ENST00000646259.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	71	2	3.56618	4.4774899999999995	5.3888	0.0183035	0.00648941	0.0922556	0.0504266
chr18	74830615	74830715	7091583	0	+	0.34	(0.33,0.36]	chr18	722438	261	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.31234	4.476825	4.64131	0.0867669	0.0458858	0.182221	0.154743
chr13	113615333	113615433	5659154	0	+	0.63	(0.58,1]	chr13	555781	39	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	70	2	3.89258	4.47664	5.0607	0.029633	0.00229214	0.116079	0.0253494
chr19	18468693	18468792	7347878	0	-	0.656566	(0.58,1]	chr19	761486	24	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	79	2	2.71042	4.476435	6.24245	0.0396128	0.00334087	0.143388	0.0368376
chr13	75391390	75391490	5727098	0	-	0.51	(0.485,0.523]	chr13	561722	142	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	2	194	2	4.11191	4.476345	4.84078	0.0075144	2.20069e-4	0.0576451	0.00484781
chr2	39107840	39107940	1127232	0	-	0.47	(0.45,0.485]	chr2	123480	95	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.11446	4.476005000000001	4.83755	0.06646	0.0592571	0.176157	0.162385
chr2	101126248	101126348	1239846	0	-	0.48	(0.45,0.485]	chr2	133786	164	INTRON	INTRON	TBC1D8	ENSG00000204634.13	ENST00000409318.2:ENST00000376840.8:ENST00000463469.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.11446	4.476005000000001	4.83755	0.06646	0.0592571	0.176157	0.162385
chr2	235539835	235539935	1062996	0	+	0.47	(0.45,0.485]	chr2	115656	149	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	35	2	4.11446	4.476005000000001	4.83755	0.06646	0.0592571	0.176157	0.162385
chr22	32803021	32803121	7717639	0	+	0.51	(0.485,0.523]	chr22	807776	5	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	3	165	2	2.97977	4.4759899999999995	5.97221	0.0185986	9.86421e-4	0.0932156	0.0140716
chr2	171421425	171421525	1315969	0	-	0.35	(0.33,0.36]	chr2	140748	63	INTRON	INTRON	METTL8	ENSG00000123600.21	ENST00000612742.5:ENST00000375258.9:ENST00000447486.5:ENST00000392604.6:ENST00000460188.5:ENST00000392599.6:ENST00000460539.5:ENST00000462821.1:ENST00000442778.5:ENST00000453846.5:ENST00000442541.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	76	2	3.52816	4.4759150000000005	5.42367	0.0299185	0.00867795	0.116945	0.0612699
chr5	78462153	78462252	2462835	0	+	0.40404	(0.39,0.419]	chr5	245979	24	INTRON	INTRON	SCAMP1	ENSG00000085365.18	ENST00000614488.4:ENST00000618166.4:ENST00000621999.5:ENST00000320280.8:ENST00000506858.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	83	2	2.84832	4.47567	6.10302	0.0375279	0.0120635	0.139823	0.0745226
chr17	340155	340254	6821690	0	-	0.606061	(0.58,1]	chr17	689625	6	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000577079.5:ENST00000573780.5:ENST00000575130.5:ENST00000575634.5	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	2.78186	4.475655	6.16945	0.0342923	0.00387582	0.13449	0.0401256
chr2	165940427	165940526	1301088	0	-	0.545455	(0.523,0.58]	chr2	139566	29	INTRON	INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000679840.1:ENST00000680448.1:ENST00000681606.1:ENST00000679671.1:ENST00000464374.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	98	2	3.01186	4.47525	5.93864	0.0114442	0.00944557	0.0723462	0.0650078
chr9	133854389	133854489	4428942	0	-	0.59	(0.58,1]	chr9	423304	197	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	2	172	2	4.39644	4.475239999999999	4.55404	0.00271982	3.19972e-4	0.0331692	0.00635576
chr2	127732024	127732123	1266924	0	-	0.40404	(0.39,0.419]	chr2	136569	49	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5	protein_coding	protein_coding	protein_coding	protein_coding	1	94	2	3.04731	4.475095	5.90288	0.0514906	0.00183094	0.148503	0.0216571
chr12	132532370	132532469	5352939	0	+	0.626263	(0.58,1]	chr12	523670	40	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	2	110	2	2.53151	4.4748850000000004	6.41826	0.0446412	1.27804e-4	0.140478	0.00328053
chr5	1104898	1104998	2608900	0	-	0.7	(0.58,1]	chr5	259667	103	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	3.63877	4.474565	5.31036	0.0127766	0.00312721	0.0769397	0.0311915
chr20	3493095	3493195	7419782	0	+	0.34	(0.33,0.36]	chr20	772906	212	INTRON	INTRON	ATRN	ENSG00000088812.18	ENST00000262919.10:ENST00000446916.2	protein_coding	protein_coding	protein_coding	protein_coding	2	113	2	2.33388	4.47445	6.61502	0.0452305	0.00413645	0.154539	0.0416015
chr4	3099594	3099694	2002825	0	+	0.48	(0.45,0.485]	chr4	204281	2	SS5_PROX	SS5_PROX:INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000680291.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	91	2	3.12123	4.474065	5.8269	0.0428769	0.00167585	0.137868	0.0203806
chr1	1024354	1024454	958	0	+	0.61	(0.58,1]	chr1	166	15	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.18518	4.47401	4.76284	0.0471737	0.0374658	0.143232	0.139793
chr1	2268236	2268336	4894	0	+	0.62	(0.58,1]	chr1	1052	198	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.18518	4.47401	4.76284	0.0471737	0.0374658	0.143232	0.139793
chr11	71238095	71238195	5066684	0	-	0.62	(0.58,1]	chr11	492808	129	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000482659.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.18518	4.47401	4.76284	0.0471737	0.0374658	0.143232	0.139793
chr16	2028302	2028399	6372245	0	+	0.608247	(0.58,1]	chr16	629168	7	INTRON	INTRON	SLC9A3R2	ENSG00000065054.14	ENST00000567504.5:ENST00000424542.7:ENST00000432365.6	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.18518	4.47401	4.76284	0.0471737	0.0374658	0.143232	0.139793
chr16	85524179	85524279	6518313	0	+	0.62	(0.58,1]	chr16	646391	1649	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.18518	4.47401	4.76284	0.0471737	0.0374658	0.143232	0.139793
chr16	85587132	85587232	6518944	0	+	0.66	(0.58,1]	chr16	646396	304	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.18518	4.47401	4.76284	0.0471737	0.0374658	0.143232	0.139793
chr16	87855332	87855431	6657027	0	-	0.646465	(0.58,1]	chr16	666007	31	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.18518	4.47401	4.76284	0.0471737	0.0374658	0.143232	0.139793
chr19	1290479	1290578	7186909	0	+	0.676768	(0.58,1]	chr19	731132	38	INTRON	INTRON	EFNA2	ENSG00000099617.4	ENST00000215368.4	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.18518	4.47401	4.76284	0.0471737	0.0374658	0.143232	0.139793
chr21	43956639	43956739	7625350	0	+	0.6	(0.58,1]	chr21	796924	10	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000448845.1:ENST00000422850.5:ENST00000546158.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.18518	4.47401	4.76284	0.0471737	0.0374658	0.143232	0.139793
chr7	207404	207503	3305728	0	+	0.666667	(0.58,1]	chr7	320155	100	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6:ENST00000477004.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.18518	4.47401	4.76284	0.0471737	0.0374658	0.143232	0.139793
chr9	134351410	134351510	4260937	0	+	0.6	(0.58,1]	chr9	406311	244	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.18518	4.47401	4.76284	0.0471737	0.0374658	0.143232	0.139793
chr9	134362089	134362189	4261044	0	+	0.7	(0.58,1]	chr9	406311	351	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.18518	4.47401	4.76284	0.0471737	0.0374658	0.143232	0.139793
chr9	134365183	134365283	4261075	0	+	0.61	(0.58,1]	chr9	406311	382	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.18518	4.47401	4.76284	0.0471737	0.0374658	0.143232	0.139793
chrX	71215346	71215442	7903325	0	+	0.625	(0.58,1]	chrX	827967	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	GJB1	ENSG00000169562.13	ENST00000674844.1:ENST00000674549.1:ENST00000374029.2:ENST00000675209.1:ENST00000675368.1:ENST00000647424.1:ENST00000675609.1:ENST00000646835.1:ENST00000447581.2	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.18518	4.47401	4.76284	0.0471737	0.0374658	0.143232	0.139793
chr15	85215709	85215808	6344693	0	-	0.474747	(0.45,0.485]	chr15	625513	54	INTRON	INTRON	ENSG00000229212	ENSG00000229212.8	ENST00000648573.1:ENST00000560756.5:ENST00000560811.5:ENST00000560405.5:ENST00000558470.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	97	2	3.51602	4.47387	5.43172	0.0229356	0.00440365	0.102982	0.0393688
chr11	70765266	70765366	5061934	0	-	0.47	(0.45,0.485]	chr11	492701	474	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	75	2	3.26377	4.473535	5.6833	0.0195193	0.0149252	0.0955413	0.0848525
chr2	216099120	216099220	1023231	0	+	0.43	(0.419,0.45]	chr2	111530	25	INTRON	INTRON	TMEM169	ENSG00000163449.11	ENST00000454545.5:ENST00000433112.5:ENST00000295658.8:ENST00000437356.7:ENST00000406027.2:ENST00000455479.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.19215	4.473525	4.7549	0.0888907	0.0617113	0.183874	0.18013
chr20	3534452	3534552	7420196	0	+	0.42	(0.419,0.45]	chr20	772906	626	INTRON	INTRON	ATRN	ENSG00000088812.18	ENST00000262919.10:ENST00000446916.2	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.19215	4.473525	4.7549	0.0888907	0.0617113	0.183874	0.18013
chr16	66688444	66688544	6605592	0	-	0.46	(0.45,0.485]	chr16	660577	515	INTRON	INTRON	CMTM4	ENSG00000183723.13	ENST00000394106.7:ENST00000330687.8:ENST00000563952.1	protein_coding	protein_coding	protein_coding	protein_coding	2	101	2	2.83043	4.473445	6.11646	0.0153861	0.00956667	0.0869771	0.0658012
chr18	58151660	58151759	7072529	0	+	0.424242	(0.419,0.45]	chr18	721129	17	INTRON	INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5:ENST00000588516.5:ENST00000456986.5:ENST00000675502.1:ENST00000675554.1:ENST00000675137.1:ENST00000587547.1:ENST00000675227.1:ENST00000357895.9:ENST00000435432.6:ENST00000586263.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	96	2	3.08499	4.473415	5.86184	0.0509743	0.00223565	0.148503	0.024843
chr16	29274712	29274812	6433584	0	+	0.32	(0.29,0.33]	chr16	636745	226	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	1	98	2	3.70142	4.473285	5.24515	0.0148734	0.00631714	0.0833515	0.0501889
chr2	3297896	3297996	1081086	0	-	0.41	(0.39,0.419]	chr2	117633	152	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	94	2	2.8336	4.47308	6.11256	0.0695649	0.00108325	0.167028	0.0149525
chr16	85587731	85587831	6518950	0	+	0.57	(0.523,0.58]	chr16	646396	310	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.35934	4.47307	5.5868	0.020474	0.0113252	0.0979776	0.071894
chr1	1107071	1107171	380253	0	-	0.69	(0.58,1]	chr1	42815	2	SS3_PROX	SS3_PROX:INTRON	C1orf159	ENSG00000131591.18	ENST00000379339.5:ENST00000379325.7:ENST00000421241.7:ENST00000467751.5:ENST00000477196.5:ENST00000434641.5:ENST00000482816.5:ENST00000462097.5:ENST00000475119.5:ENST00000472741.5:ENST00000480643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.3962	4.472735	4.54927	0.0643046	0.0250928	0.161669	0.114418
chr10	79162433	79162533	4532981	0	+	0.61	(0.58,1]	chr10	432437	3	SS5_PROX	SS5_PROX:INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.3962	4.472735	4.54927	0.0643046	0.0250928	0.161669	0.114418
chr10	132238834	132238933	4781996	0	-	0.585859	(0.58,1]	chr10	457361	103	INTRON	INTRON	STK32C	ENSG00000165752.17	ENST00000298630.8:ENST00000368622.5:ENST00000462160.5:ENST00000368620.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.3962	4.472735	4.54927	0.0643046	0.0250928	0.161669	0.114418
chr11	70579529	70579629	5060068	0	-	0.66	(0.58,1]	chr11	492663	762	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.3962	4.472735	4.54927	0.0643046	0.0250928	0.161669	0.114418
chr16	572313	572409	6368138	0	+	0.583333	(0.58,1]	chr16	627950	12	INTRON	INTRON	PIGQ	ENSG00000007541.17	ENST00000293874.2:ENST00000409527.6:ENST00000321878.10:ENST00000439574.1:ENST00000422307.6:ENST00000636657.1:ENST00000026218.9:ENST00000470411.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.3962	4.472735	4.54927	0.0643046	0.0250928	0.161669	0.114418
chr16	952574	952642	6531558	0	-	0.647059	(0.58,1]	chr16	648702	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1:ENST00000566609.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.3962	4.472735	4.54927	0.0643046	0.0250928	0.161669	0.114418
chr17	77206228	77206314	6803029	0	+	0.593023	(0.58,1]	chr17	686656	1	CDS	CDS:EXON_MRNA	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000589827.5:ENST00000430767.8:ENST00000585618.5:ENST00000436233.9:ENST00000443798.8:ENST00000591437.5:ENST00000431431.6:ENST00000587821.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.3962	4.472735	4.54927	0.0643046	0.0250928	0.161669	0.114418
chr2	74374933	74375026	1192972	0	-	0.612903	(0.58,1]	chr2	129494	2	INTRON	INTRON	DCTN1	ENSG00000204843.13	ENST00000394003.7:ENST00000361874.8:ENST00000680606.1:ENST00000628224.3:ENST00000434055.5:ENST00000409240.5:ENST00000409868.5:ENST00000409567.7:ENST00000458655.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.3962	4.472735	4.54927	0.0643046	0.0250928	0.161669	0.114418
chr2	239158063	239158162	1390277	0	-	0.606061	(0.58,1]	chr2	148698	9	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.3962	4.472735	4.54927	0.0643046	0.0250928	0.161669	0.114418
chr20	348203	348299	7413999	0	+	0.770833	(0.58,1]	chr20	772224	3	INTRON	INTRON	NRSN2	ENSG00000125841.13	ENST00000609179.5:ENST00000492242.5:ENST00000382291.7:ENST00000609504.5:ENST00000382285.7:ENST00000608467.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.3962	4.472735	4.54927	0.0643046	0.0250928	0.161669	0.114418
chr22	37512160	37512241	7808328	0	-	0.592593	(0.58,1]	chr22	818438	4	UTR5	UTR5:EXON_MRNA:INTRON	CARD10	ENSG00000100065.15	ENST00000403299.5:ENST00000251973.10:ENST00000437756.5:ENST00000494166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.3962	4.472735	4.54927	0.0643046	0.0250928	0.161669	0.114418
chr19	40089514	40089589	7379224	0	-	0.36	(0.33,0.36]	chr19	765585	1	SS3_PROX	SS3_PROX:INTRON	ZNF780A	ENSG00000197782.15	ENST00000450241.6:ENST00000414720.6:ENST00000455521.5:ENST00000340963.9:ENST00000683561.1:ENST00000595687.6:ENST00000594395.5:ENST00000595773.5:ENST00000599368.5:ENST00000601715.5:ENST00000601688.5:ENST00000599972.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	1	76	2	3.56232	4.47258	5.38284	0.0317908	0.00801919	0.121384	0.0581592
chr2	239084442	239084542	1389519	0	-	0.57	(0.523,0.58]	chr2	148604	2	SS3_PROX	SS3_PROX:INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000487617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	193	2	4.15326	4.47251	4.79176	0.00699158	2.4626e-4	0.0555241	0.00524985
chr10	119360350	119360450	4594851	0	+	0.63	(0.58,1]	chr10	439173	334	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.35051	4.4724900000000005	5.59447	0.0117666	0.00953058	0.0737098	0.0650078
chr16	87919956	87920055	6657565	0	-	0.646465	(0.58,1]	chr16	666059	147	INTRON	INTRON	CA5A	ENSG00000174990.8	ENST00000649158.1:ENST00000648177.1:ENST00000649794.3:ENST00000648022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	68	2	3.35051	4.4724900000000005	5.59447	0.0117666	0.00953058	0.0737098	0.0650078
chr8	25396717	25396817	3776264	0	+	0.56	(0.523,0.58]	chr8	363736	6	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000467709.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	76	2	3.03457	4.47227	5.90997	0.0231444	0.012016	0.109883	0.0743424
chr13	113330877	113330976	5753239	0	-	0.616162	(0.58,1]	chr13	564094	44	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	1	82	2	3.35086	4.472049999999999	5.59324	0.0218816	0.0014734	0.101015	0.0185589
chr16	23389486	23389586	6567870	0	-	0.61	(0.58,1]	chr16	655260	4	SS3_PROX	SS3_PROX:INTRON	COG7	ENSG00000168434.13	ENST00000307149.10:ENST00000566364.1:ENST00000561854.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	82	2	3.35086	4.472049999999999	5.59324	0.0218816	0.0014734	0.101015	0.0185589
chr1	146154068	146154167	579284	0	-	0.272727	[0,0.29]	chr1	66467	60	INTRON	INTRON	NOTCH2NLA	ENSG00000264343.7	ENST00000579793.6	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.25528	4.471915	4.68855	0.0554735	0.0399299	0.154188	0.144065
chr10	74114387	74114487	4511606	0	+	0.56	(0.523,0.58]	chr10	431885	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VCL	ENSG00000035403.18	ENST00000623461.3:ENST00000372755.7:ENST00000624354.3:ENST00000211998.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	79	2	2.86937	4.471685	6.074	0.0324455	0.00906277	0.130548	0.0637469
chr1	12587032	12587132	402473	0	-	0.38	(0.36,0.39]	chr1	46222	60	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	78	2	3.14223	4.471145	5.80006	0.0209989	0.0191255	0.103249	0.0952349
chr16	46906641	46906741	6442650	0	+	0.57	(0.523,0.58]	chr16	639008	4	SS3_PROX	SS3_PROX:INTRON	GPT2	ENSG00000166123.14	ENST00000340124.9:ENST00000562132.5:ENST00000440783.2	protein_coding	protein_coding	protein_coding	protein_coding	6	513	2	4.19407	4.471019999999999	4.74797	0.00183296	3.23194e-5	0.0266697	0.00118877
chr9	37989027	37989127	4302977	0	-	0.36	(0.33,0.36]	chr9	411610	138	INTRON	INTRON	SHB	ENSG00000107338.10	ENST00000377707.4	protein_coding	protein_coding	protein_coding	protein_coding	2	104	2	3.29499	4.471005	5.64702	0.0212683	0.00540177	0.0996805	0.0451706
chr1	21905298	21905397	422234	0	-	0.535354	(0.523,0.58]	chr1	49642	86	INTRON	INTRON	HSPG2	ENSG00000142798.20	ENST00000374695.8	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.43597	4.47095	4.50593	0.094303	0.0313935	0.188571	0.127822
chr1	85453956	85454056	519901	0	-	0.55	(0.523,0.58]	chr1	61355	188	INTRON	INTRON	DDAH1	ENSG00000153904.21	ENST00000426972.8:ENST00000284031.13	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.43597	4.47095	4.50593	0.094303	0.0313935	0.188571	0.127822
chr1	226981726	226981826	356018	0	+	0.56	(0.523,0.58]	chr1	40176	3	SS3_PROX	SS3_PROX:INTRON	COQ8A	ENSG00000163050.18	ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000485462.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.43597	4.47095	4.50593	0.094303	0.0313935	0.188571	0.127822
chr11	61758736	61758836	4862556	0	+	0.55	(0.523,0.58]	chr11	466004	29	INTRON	INTRON	MYRF	ENSG00000124920.14	ENST00000278836.10:ENST00000537766.1:ENST00000265460.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.43597	4.47095	4.50593	0.094303	0.0313935	0.188571	0.127822
chr11	70820163	70820263	5062485	0	-	0.56	(0.523,0.58]	chr11	492714	4	SS5_PROX	SS5_PROX:INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.43597	4.47095	4.50593	0.094303	0.0313935	0.188571	0.127822
chr12	100198643	100198743	5482592	0	-	0.54	(0.523,0.58]	chr12	539071	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000257489	ENSG00000257489.6	ENST00000550096.5:ENST00000548782.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	33	2	4.43597	4.47095	4.50593	0.094303	0.0313935	0.188571	0.127822
chr14	67921842	67921942	5860079	0	+	0.54	(0.523,0.58]	chr14	572976	126	INTRON	INTRON	RAD51B	ENSG00000182185.19	ENST00000487861.5:ENST00000471583.6:ENST00000479335.5:ENST00000487270.5:ENST00000488612.5:ENST00000553595.5:ENST00000497460.5:ENST00000492236.5:ENST00000554244.5:ENST00000478014.5:ENST00000469165.6:ENST00000460526.5:ENST00000468382.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.43597	4.47095	4.50593	0.094303	0.0313935	0.188571	0.127822
chr16	11034950	11035049	6386219	0	+	0.525253	(0.523,0.58]	chr16	631698	97	INTRON	INTRON	CLEC16A	ENSG00000038532.16	ENST00000409790.6:ENST00000409552.4:ENST00000463896.5:ENST00000476025.5:ENST00000465491.5:ENST00000646363.1:ENST00000487189.5:ENST00000463459.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.43597	4.47095	4.50593	0.094303	0.0313935	0.188571	0.127822
chr2	10189605	10189705	718197	0	+	0.54	(0.523,0.58]	chr2	84002	335	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	33	2	4.43597	4.47095	4.50593	0.094303	0.0313935	0.188571	0.127822
chr2	239374099	239374199	1392453	0	-	0.58	(0.523,0.58]	chr2	148759	208	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.43597	4.47095	4.50593	0.094303	0.0313935	0.188571	0.127822
chr7	155714425	155714524	3519230	0	+	0.565657	(0.523,0.58]	chr7	339826	26	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3:ENST00000486747.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.43597	4.47095	4.50593	0.094303	0.0313935	0.188571	0.127822
chr8	9645145	9645245	3753589	0	+	0.55	(0.523,0.58]	chr8	360714	291	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000520408.5:ENST00000518281.5:ENST00000518027.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.43597	4.47095	4.50593	0.094303	0.0313935	0.188571	0.127822
chr9	129496288	129496388	4250737	0	+	0.58	(0.523,0.58]	chr9	404717	2	SS5_PROX	SS5_PROX:INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	33	2	4.43597	4.47095	4.50593	0.094303	0.0313935	0.188571	0.127822
chrX	18553491	18553591	7851522	0	+	0.58	(0.523,0.58]	chrX	823328	423	INTRON	INTRON	CDKL5	ENSG00000008086.13	ENST00000379996.7:ENST00000623535.2:ENST00000674046.1:ENST00000635828.1:ENST00000637881.1:ENST00000379989.6:ENST00000623364.3:ENST00000624700.3:ENST00000463994.4	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.43597	4.47095	4.50593	0.094303	0.0313935	0.188571	0.127822
chr2	134143579	134143679	895666	0	+	0.55	(0.523,0.58]	chr2	101196	160	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	258	2	4.3908	4.47086	4.55092	0.00329138	2.08007e-4	0.0368338	0.0046467
chr6	47232384	47232479	3143727	0	-	0.294737	(0.29,0.33]	chr6	306733	10	UTR3	UTR3:EXON_MRNA	TNFRSF21	ENSG00000146072.6	ENST00000296861.2	protein_coding	protein_coding	protein_coding	protein_coding	7	222	2	3.17638	4.470535	5.76469	0.0139072	0.00141508	0.0805904	0.0181168
chr3	82214499	82214599	1508529	0	+	0.34	(0.33,0.36]	chr3	161017	68	INTRON	INTRON	LINC02008	ENSG00000239440.6	ENST00000470263.5:ENST00000494340.2:ENST00000666519.1:ENST00000668833.1:ENST00000653255.1:ENST00000666096.1	lncRNA	lncRNA	lncRNA	lncRNA	1	78	2	3.78113	4.470219999999999	5.15931	0.043896	0.00476732	0.139792	0.0414524
chr12	772761	772860	5148827	0	+	0.323232	(0.29,0.33]	chr12	500570	181	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.42727	4.470140000000001	4.51301	0.0885563	0.0335282	0.183874	0.133139
chr14	54789540	54789639	5821692	0	+	0.292929	(0.29,0.33]	chr14	569165	7	UTR3	UTR3:EXON_MRNA	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.42727	4.470140000000001	4.51301	0.0885563	0.0335282	0.183874	0.133139
chr2	108809362	108809461	873447	0	+	0.292929	(0.29,0.33]	chr2	98598	40	INTRON	INTRON	CCDC138	ENSG00000163006.12	ENST00000412964.6:ENST00000409529.6:ENST00000295124.9:ENST00000456512.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.42727	4.470140000000001	4.51301	0.0885563	0.0335282	0.183874	0.133139
chr22	40245714	40245814	7728177	0	+	0.31	(0.29,0.33]	chr22	809606	3	SS3_PROX	SS3_PROX:INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000402203.5:ENST00000454349.7:ENST00000489500.1:ENST00000335727.13	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.42727	4.470140000000001	4.51301	0.0885563	0.0335282	0.183874	0.133139
chr17	17716531	17716631	6689200	0	+	0.48	(0.45,0.485]	chr17	671338	316	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	2	100	2	2.95398	4.469995	5.98601	0.0119228	0.0115759	0.0741726	0.0732749
chr7	139707939	139708039	3723225	0	-	0.53	(0.523,0.58]	chr7	357498	759	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.31719	4.469885	5.62258	0.0193313	0.0124719	0.0954446	0.0765738
chr18	6042739	6042839	7110138	0	-	0.48	(0.45,0.485]	chr18	723828	101	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000400105.6:ENST00000317931.12:ENST00000400104.7	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	2.98123	4.469835	5.95844	0.0270875	0.0124835	0.119337	0.0761905
chr6	158018793	158018893	3059680	0	+	0.52	(0.485,0.523]	chr6	297373	6	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.38908	4.46981	5.55054	0.0215787	0.0107186	0.100612	0.0700744
chr13	19985964	19986064	5543069	0	+	0.51	(0.485,0.523]	chr13	547198	155	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382881.7:ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000620447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.43249	4.469415	4.50634	0.0939553	0.0322299	0.188571	0.12988
chr15	45172718	45172818	6250304	0	-	0.5	(0.485,0.523]	chr15	615589	4	SS3_PROX	SS3_PROX:INTRON	SHF	ENSG00000138606.20	ENST00000290894.12:ENST00000690270.1:ENST00000560540.5:ENST00000560734.5:ENST00000458022.6:ENST00000558294.1:ENST00000561239.6:ENST00000560471.5:ENST00000559566.5:ENST00000558685.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.43249	4.469415	4.50634	0.0939553	0.0322299	0.188571	0.12988
chr20	36311806	36311906	7469105	0	+	0.52	(0.485,0.523]	chr20	777805	49	INTRON	INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.43249	4.469415	4.50634	0.0939553	0.0322299	0.188571	0.12988
chr8	122875532	122875632	3910601	0	+	0.49	(0.485,0.523]	chr8	373489	116	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6:ENST00000534247.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.43249	4.469415	4.50634	0.0939553	0.0322299	0.188571	0.12988
chr12	132530877	132530976	5352924	0	+	0.656566	(0.58,1]	chr12	523670	25	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.20215	4.469085	5.73602	0.0136092	0.00904546	0.0811697	0.0637469
chr2	240615289	240615388	1075092	0	+	0.545455	(0.523,0.58]	chr2	116637	79	INTRON	INTRON	CAPN10:GPR35	ENSG00000142330.20:ENSG00000178623.13	ENST00000270364.11:ENST00000319838.10:ENST00000403859.1	protein_coding	protein_coding	protein_coding	protein_coding	1	89	2	3.16507	4.4689700000000006	5.77287	0.0382777	0.00160162	0.131324	0.0197827
chr6	24711271	24711369	3111320	0	-	0.397959	(0.39,0.419]	chr6	301651	20	INTRON	INTRON	C6orf62	ENSG00000112308.13	ENST00000378119.9:ENST00000378102.3	protein_coding	protein_coding	protein_coding	protein_coding	1	99	2	3.44204	4.46895	5.49586	0.0284392	0.00479873	0.114979	0.0416285
chr8	17968701	17968794	3764930	0	+	0.322581	(0.29,0.33]	chr8	361730	12	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	3.1738	4.468855	5.76391	0.0362747	0.0018044	0.127965	0.0215053
chr17	29261438	29261538	6877034	0	-	0.32	(0.29,0.33]	chr17	698041	57	UTR3	UTR3:EXON_MRNA	NUFIP2	ENSG00000108256.9	ENST00000225388.9	protein_coding	protein_coding	protein_coding	protein_coding	4	136	2	2.43373	4.468825	6.50392	0.0171909	0.00368139	0.0923809	0.0389784
chr6	167844594	167844694	3073517	0	+	0.36	(0.33,0.36]	chr6	298792	163	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000400825.8:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400824.8:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	35	2	4.102	4.4686900000000005	4.83538	0.0679743	0.0642879	0.184676	0.164413
chrX	101048151	101048251	8082922	0	-	0.35	(0.33,0.36]	chrX	842888	41	INTRON	INTRON	TRMT2B:TRMT2B-AS1	ENSG00000188917.15:ENSG00000225839.2	ENST00000545398.5:ENST00000372936.4:ENST00000372939.5:ENST00000372935.5:ENST00000478422.1:ENST00000443801.2	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	0	35	2	4.102	4.4686900000000005	4.83538	0.0679743	0.0642879	0.184676	0.164413
chr2	73853139	73853238	833285	0	+	0.353535	(0.33,0.36]	chr2	94131	2	UTR3	UTR3:EXON_MRNA:INTRON	STAMBP	ENSG00000124356.17	ENST00000339566.7:ENST00000684095.1:ENST00000682847.1:ENST00000683317.1:ENST00000683036.1:ENST00000682157.1:ENST00000683349.1:ENST00000684337.1:ENST00000683247.1:ENST00000682683.1:ENST00000682329.1:ENST00000683149.1:ENST00000682851.1:ENST00000394070.7:ENST00000683728.1:ENST00000409707.6:ENST00000683518.1:ENST00000684585.1:ENST00000683434.1:ENST00000682352.1:ENST00000684697.1:ENST00000682592.1:ENST00000683718.1:ENST00000682423.1:ENST00000478946.2:ENST00000684200.1:ENST00000684355.1:ENST00000684774.1:ENST00000536064.2:ENST00000683465.1:ENST00000684716.1:ENST00000683016.1:ENST00000684174.1:ENST00000684703.1:ENST00000682799.1:ENST00000682998.1:ENST00000682379.1:ENST00000684312.1:ENST00000683852.1:ENST00000684321.1:ENST00000394073.6:ENST00000684671.1:ENST00000682848.1:ENST00000683877.1:ENST00000683530.1:ENST00000683027.1:ENST00000683304.1:ENST00000682784.1:ENST00000683205.1:ENST00000682351.1:ENST00000683818.1:ENST00000684426.1:ENST00000683582.1:ENST00000683417.1:ENST00000683594.1:ENST00000682387.1:ENST00000682747.1:ENST00000682105.1:ENST00000683928.1:ENST00000683391.1:ENST00000684758.1:ENST00000682558.1:ENST00000683902.1:ENST00000432295.7:ENST00000486458.2:ENST00000683314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	76	2	3.59568	4.46825	5.34082	0.0338211	0.00741959	0.124319	0.0553519
chr17	56892529	56892629	6931123	0	-	0.38	(0.36,0.39]	chr17	706270	3	SS3_PROX	SS3_PROX:INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000574234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	230	2	3.47116	4.4677	5.46424	0.0269033	5.25738e-5	0.112113	0.00170356
chr11	57806120	57806205	4858020	0	+	0.458824	(0.45,0.485]	chr11	465238	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1:ENST00000682621.1:ENST00000683201.1:ENST00000682974.1:ENST00000684035.1:ENST00000683510.1:ENST00000683769.1:ENST00000530720.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.22352	4.4673099999999994	4.7111	0.0781398	0.0496712	0.175203	0.160725
chr2	207744109	207744206	1004460	0	+	0.474227	(0.45,0.485]	chr2	110256	14	INTRON	INTRON	CCNYL1	ENSG00000163249.13	ENST00000392209.7:ENST00000295414.8:ENST00000339882.9:ENST00000650811.1:ENST00000452312.1:ENST00000420321.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.22352	4.4673099999999994	4.7111	0.0781398	0.0496712	0.175203	0.160725
chr22	21675515	21675615	7690779	0	+	0.48	(0.45,0.485]	chr22	804828	4	SS5_PROX	SS5_PROX:INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000458567.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000679586.1:ENST00000680094.1:ENST00000484439.5:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000680022.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.22352	4.4673099999999994	4.7111	0.0781398	0.0496712	0.175203	0.160725
chr4	42636083	42636183	2227835	0	-	0.47	(0.45,0.485]	chr4	224699	86	INTRON	INTRON	ATP8A1	ENSG00000124406.16	ENST00000381668.9:ENST00000264449.14:ENST00000510289.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.22352	4.4673099999999994	4.7111	0.0781398	0.0496712	0.175203	0.160725
chr8	62964453	62964553	3834505	0	+	0.46	(0.45,0.485]	chr8	368215	101	INTRON	INTRON	NKAIN3	ENSG00000185942.13	ENST00000519049.6:ENST00000674864.1:ENST00000623646.3:ENST00000523211.5:ENST00000674873.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.22352	4.4673099999999994	4.7111	0.0781398	0.0496712	0.175203	0.160725
chr8	124687071	124687171	4064529	0	-	0.48	(0.45,0.485]	chr8	387132	137	INTRON	INTRON	MTSS1	ENSG00000170873.19	ENST00000518547.6:ENST00000378017.7:ENST00000325064.9:ENST00000522162.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.22352	4.4673099999999994	4.7111	0.0781398	0.0496712	0.175203	0.160725
chr6	75907708	75907808	2942984	0	+	0.37	(0.36,0.39]	chr6	289648	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MYO6	ENSG00000196586.17	ENST00000671923.1:ENST00000369975.6:ENST00000369985.9:ENST00000369977.8:ENST00000664640.1:ENST00000615563.4:ENST00000672093.1:ENST00000430435.1:ENST00000672162.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	105	2	3.66953	4.467305	5.26508	0.0195747	0.00795848	0.0955413	0.0578938
chr10	102648812	102648912	4576512	0	+	0.63	(0.58,1]	chr10	437280	26	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	227	2	4.16868	4.467265	4.76585	0.00120967	2.57801e-4	0.0210863	0.00545505
chr4	10102900	10102999	2195679	0	-	0.474747	(0.45,0.485]	chr4	222412	34	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	77	2	3.03233	4.4670000000000005	5.90167	0.0244076	0.0137135	0.113311	0.0799457
chr2	71372564	71372662	829283	0	+	0.387755	(0.36,0.39]	chr2	93568	22	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000410075.5:ENST00000409544.5:ENST00000264447.9:ENST00000601581.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.30212	4.46691	4.6317	0.0950937	0.0494303	0.189021	0.160725
chr9	124334302	124334401	4236274	0	+	0.414141	(0.39,0.419]	chr9	402147	65	INTRON	INTRON	NEK6	ENSG00000119408.17	ENST00000373603.5:ENST00000540326.5:ENST00000320246.10:ENST00000373600.7:ENST00000545174.5:ENST00000444973.5:ENST00000454453.5:ENST00000425237.5:ENST00000546191.5:ENST00000422297.5:ENST00000539416.5:ENST00000394199.6	protein_coding	protein_coding	protein_coding	protein_coding	2	129	2	2.68797	4.4668	6.24563	0.0479949	7.69256e-4	0.144601	0.0118331
chr14	104873155	104873255	5925943	0	+	0.7	(0.58,1]	chr14	579942	42	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	2	96	2	3.62605	4.466760000000001	5.30747	0.0196049	0.00138924	0.0955413	0.0179324
chr1	148547570	148547662	582118	0	-	0.413043	(0.39,0.419]	chr1	66942	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF14	ENSG00000270629.7	ENST00000619423.4:ENST00000614999.4:ENST00000621066.4:ENST00000611826.4:ENST00000616120.4:ENST00000621070.4	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.30157	4.46597	4.63037	0.0963077	0.0496288	0.189169	0.160725
chr15	69182142	69182242	6142362	0	+	0.4	(0.39,0.419]	chr15	604176	210	INTRON	INTRON	GLCE	ENSG00000138604.10	ENST00000559798.2:ENST00000261858.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.30157	4.46597	4.63037	0.0963077	0.0496288	0.189169	0.160725
chr11	68349929	68350028	4882457	0	+	0.525253	(0.523,0.58]	chr11	470548	13	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	73	2	3.27377	4.46563	5.65749	0.0182707	0.0137592	0.0921579	0.0814923
chr14	102878319	102878419	5921286	0	+	0.55	(0.523,0.58]	chr14	579084	14	INTRON	INTRON	TRAF3	ENSG00000131323.16	ENST00000392745.8:ENST00000560371.5:ENST00000347662.8:ENST00000539721.5:ENST00000351691.9:ENST00000558700.5:ENST00000559734.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	73	2	3.27377	4.46563	5.65749	0.0182707	0.0137592	0.0921579	0.0814923
chr3	172256838	172256938	1629648	0	+	0.37	(0.36,0.39]	chr3	170590	49	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	125	2	2.87673	4.46517	6.05361	0.0127951	0.00932223	0.0769416	0.0644638
chr1	85462744	85462844	519989	0	-	0.58	(0.523,0.58]	chr1	61355	276	INTRON	INTRON	DDAH1	ENSG00000153904.21	ENST00000426972.8:ENST00000284031.13	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	3.35121	4.465005	5.5788	0.0284134	0.00262418	0.114906	0.0278348
chr9	134337538	134337638	4260798	0	+	0.61	(0.58,1]	chr9	406311	105	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	112	2	2.96176	4.46495	5.96814	0.0206169	5.06433e-4	0.0983493	0.00881473
chr5	119502984	119503082	2518456	0	+	0.306122	(0.29,0.33]	chr5	250154	5	INTRON	INTRON	HSD17B4	ENSG00000133835.18	ENST00000683936.1:ENST00000509514.6:ENST00000682996.1:ENST00000684214.1:ENST00000683974.1:ENST00000414835.7:ENST00000442060.7:ENST00000510025.7:ENST00000515320.5:ENST00000646058.1:ENST00000682445.1:ENST00000515235.6:ENST00000518349.6:ENST00000683371.1:ENST00000683390.1:ENST00000645832.1:ENST00000644146.1:ENST00000646355.1:ENST00000647335.1:ENST00000682531.1:ENST00000683265.1:ENST00000646554.1:ENST00000684160.1:ENST00000682626.1:ENST00000647342.1:ENST00000643250.1:ENST00000645099.1:ENST00000684131.1:ENST00000513628.5:ENST00000683549.1:ENST00000645702.1:ENST00000683996.1:ENST00000683372.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	73	2	3.48839	4.4648699999999995	5.44135	0.0236557	0.00869049	0.105002	0.0612699
chr2	85014652	85014751	842968	0	+	0.464646	(0.45,0.485]	chr2	94837	2	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	3.38668	4.46427	5.54186	0.0243502	0.0113463	0.106588	0.0719708
chr16	75095850	75095950	6492884	0	+	0.64	(0.58,1]	chr16	645364	1	SS5_PROX	SS5_PROX:INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1:ENST00000579084.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	80	2	3.02751	4.46403	5.90055	0.0385189	6.1741e-4	0.131324	0.0101143
chr2	162029933	162030033	1293891	0	-	0.42	(0.419,0.45]	chr2	138907	51	EXON_MRNA	EXON_MRNA:INTRON	DPP4	ENSG00000197635.11	ENST00000676810.1:ENST00000360534.8:ENST00000678566.1:ENST00000678668.1:ENST00000678583.1:ENST00000676624.1:ENST00000679104.1:ENST00000676479.1:ENST00000676996.1:ENST00000677212.1:ENST00000678740.1:ENST00000678522.1:ENST00000434918.6:ENST00000676768.1:ENST00000490286.5:ENST00000416189.6:ENST00000494507.2:ENST00000461836.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	126	2	2.64601	4.46403	6.28205	0.0164946	0.0102557	0.0914227	0.0684871
chr9	83537084	83537184	4325922	0	-	0.59	(0.58,1]	chr9	413150	695	INTRON	INTRON	FRMD3	ENSG00000172159.16	ENST00000376438.5:ENST00000304195.8	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	3.02751	4.46403	5.90055	0.0385189	6.1741e-4	0.131324	0.0101143
chr2	73089914	73090014	1189730	0	-	0.5	(0.485,0.523]	chr2	128944	2	INTRON	INTRON	RAB11FIP5	ENSG00000135631.17	ENST00000258098.6:ENST00000486777.7:ENST00000475951.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	116	2	4.09708	4.463900000000001	4.83072	0.0148956	0.00772253	0.0847741	0.0586912
chr1	6808687	6808787	8681	0	+	0.39	(0.36,0.39]	chr1	1836	12	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12:ENST00000490738.5:ENST00000476163.5:ENST00000473578.5:ENST00000557126.5:ENST00000467404.6:ENST00000461311.1:ENST00000486138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	105	2	3.25646	4.46387	5.67128	0.023302	0.00627542	0.103669	0.0499896
chr3	15098921	15099021	1694743	0	-	0.68	(0.58,1]	chr3	177107	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RBSN	ENSG00000131381.12	ENST00000253699.7:ENST00000476527.6:ENST00000449964.6:ENST00000441057.5:ENST00000449050.5:ENST00000507357.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	81	2	3.29173	4.46358	5.63543	0.0243429	0.00131165	0.106588	0.0171898
chr1	45594973	45595073	115642	0	+	0.51	(0.485,0.523]	chr1	14471	2	SS5_PROX	SS5_PROX:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000530840.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	88	2	2.98607	4.46319	5.94031	0.0503063	0.00107389	0.148176	0.0148869
chr19	953690	953790	7185383	0	+	0.67	(0.58,1]	chr19	730741	206	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	73	2	2.91493	4.463134999999999	6.01134	0.0259506	0.00531709	0.116361	0.047841
chr9	134365682	134365782	4261080	0	+	0.68	(0.58,1]	chr9	406311	387	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	73	2	2.91493	4.463134999999999	6.01134	0.0259506	0.00531709	0.116361	0.047841
chr2	86777351	86777449	846427	0	+	0.55102	(0.523,0.58]	chr2	95512	41	UTR3	UTR3:EXON_MRNA	RMND5A	ENSG00000153561.13	ENST00000283632.5	protein_coding	protein_coding	protein_coding	protein_coding	6	491	2	4.10001	4.462695	4.82538	7.78579e-4	1.59215e-4	0.0165416	0.00385073
chr17	58369325	58369424	6932562	0	-	0.565657	(0.523,0.58]	chr17	706609	54	INTRON	INTRON	RNF43	ENSG00000108375.13	ENST00000577716.5:ENST00000407977.7:ENST00000584437.5:ENST00000583753.5:ENST00000577625.5:ENST00000581868.1	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	2.918	4.462505	6.00701	0.0558053	8.61362e-4	0.154188	0.0127848
chr22	19422424	19422523	7763480	0	-	0.474747	(0.45,0.485]	chr22	813787	113	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	90	2	2.87419	4.462395	6.0506	0.061784	9.38528e-4	0.158872	0.0135546
chr17	17823317	17823417	6865754	0	-	0.57	(0.523,0.58]	chr17	695916	4	SS5_PROX	SS5_PROX:INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	100	2	3.72301	4.462025	5.20104	0.015164	0.00648051	0.0844216	0.0503748
chr17	37216056	37216156	6891352	0	-	0.38	(0.36,0.39]	chr17	699747	52	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000614450.4:ENST00000612120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	94	2	2.70325	4.4619	6.22055	0.0824711	8.14665e-4	0.179396	0.0123172
chr8	38778282	38778382	3802338	0	+	0.38	(0.36,0.39]	chr8	365828	205	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	77	2	3.59265	4.461855	5.33106	0.0383628	0.00786519	0.131324	0.0576321
chr20	33009278	33009374	7457381	0	+	0.552083	(0.523,0.58]	chr20	776365	2	INTRON	INTRON	BPIFB2	ENSG00000078898.7	ENST00000170150.4	protein_coding	protein_coding	protein_coding	protein_coding	5	352	2	3.93538	4.461675	4.98797	0.00139021	2.64915e-4	0.022808	0.00556281
chr22	37512634	37512733	7808333	0	-	0.565657	(0.523,0.58]	chr22	818439	5	INTRON	INTRON	CARD10	ENSG00000100065.15	ENST00000403299.5:ENST00000251973.10:ENST00000494166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	214	2	4.14168	4.461495	4.78131	0.00209785	0.00157839	0.0288165	0.0195793
chr1	31937354	31937454	437547	0	-	0.58	(0.523,0.58]	chr1	52119	2	SS5_PROX	SS5_PROX:INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000649841.1:ENST00000468531.1:ENST00000534796.5:ENST00000532289.1:ENST00000526960.1:ENST00000524384.5:ENST00000528840.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1:ENST00000475464.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	126	2	2.9791	4.461494999999999	5.94389	0.0263235	0.0010207	0.11063	0.0143498
chr16	85451110	85451210	6517582	0	+	0.39	(0.36,0.39]	chr16	646391	918	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	3.18563	4.4613700000000005	5.73711	0.0210765	0.0191961	0.0996078	0.0994526
chr12	48998690	48998790	5223230	0	+	0.64	(0.58,1]	chr12	506968	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DDN-AS1	ENSG00000257913.3	ENST00000552933.2:ENST00000547866.1:ENST00000552284.1:ENST00000547395.1	lncRNA	lncRNA	lncRNA	lncRNA	1	67	2	3.48503	4.4612750000000005	5.43752	0.0156166	0.006811	0.0849828	0.0524379
chr14	91219842	91219942	5899554	0	+	0.61	(0.58,1]	chr14	576431	30	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000522816.1:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	67	2	3.48503	4.4612750000000005	5.43752	0.0156166	0.006811	0.0849828	0.0524379
chr13	112817906	112818006	5653826	0	+	0.54	(0.523,0.58]	chr13	554938	13	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000459908.5:ENST00000418678.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	73	2	3.65844	4.46088	5.26332	0.0337698	0.00554418	0.124319	0.0456911
chr1	35887130	35887229	89529	0	+	0.565657	(0.523,0.58]	chr1	10417	33	INTRON	INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5:ENST00000373204.6:ENST00000674426.1:ENST00000674304.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.34118	4.4608799999999995	4.58058	0.0860403	0.0372357	0.181766	0.139793
chr10	79255418	79255517	4533916	0	+	0.525253	(0.523,0.58]	chr10	432461	113	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10:ENST00000472035.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.34118	4.4608799999999995	4.58058	0.0860403	0.0372357	0.181766	0.139793
chr16	87736132	87736232	6656442	0	-	0.58	(0.523,0.58]	chr16	665892	51	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.34118	4.4608799999999995	4.58058	0.0860403	0.0372357	0.181766	0.139793
chr19	16458215	16458315	7344548	0	-	0.57	(0.523,0.58]	chr19	760800	156	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5:ENST00000597937.5:ENST00000593760.5:ENST00000596037.5:ENST00000597559.5:ENST00000602151.1:ENST00000595845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.34118	4.4608799999999995	4.58058	0.0860403	0.0372357	0.181766	0.139793
chr19	55270539	55270637	7407623	0	-	0.55102	(0.523,0.58]	chr19	771326	39	INTRON	INTRON	HSPBP1	ENSG00000133265.11	ENST00000433386.7:ENST00000255631.9:ENST00000587922.5:ENST00000585927.1:ENST00000587959.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.34118	4.4608799999999995	4.58058	0.0860403	0.0372357	0.181766	0.139793
chr2	237711690	237711788	1070685	0	+	0.571429	(0.523,0.58]	chr2	115988	27	INTRON	INTRON	LRRFIP1	ENSG00000124831.19	ENST00000308482.14:ENST00000465870.5:ENST00000498053.5:ENST00000289175.10:ENST00000244815.9:ENST00000420665.5:ENST00000392000.4:ENST00000473815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.34118	4.4608799999999995	4.58058	0.0860403	0.0372357	0.181766	0.139793
chr20	50578219	50578319	7494165	0	+	0.55	(0.523,0.58]	chr20	781444	4	SS3_PROX	SS3_PROX:INTRON	PTPN1	ENSG00000196396.10	ENST00000541713.5:ENST00000371621.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.34118	4.4608799999999995	4.58058	0.0860403	0.0372357	0.181766	0.139793
chr9	124895857	124895956	4405603	0	-	0.535354	(0.523,0.58]	chr9	419967	50	INTRON	INTRON	GOLGA1	ENSG00000136935.14	ENST00000373555.9:ENST00000475407.5:ENST00000485337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.34118	4.4608799999999995	4.58058	0.0860403	0.0372357	0.181766	0.139793
chr3	61589758	61589858	1486895	0	+	0.48	(0.45,0.485]	chr3	160083	270	INTRON	INTRON	PTPRG	ENSG00000144724.20	ENST00000495879.1:ENST00000474889.6:ENST00000475527.1:ENST00000295874.14	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	101	2	3.27155	4.460385	5.64922	0.020599	0.00535743	0.0982852	0.0448556
chr4	3366088	3366188	2005097	0	+	0.64	(0.58,1]	chr4	204663	227	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	80	2	3.16566	4.46036	5.75506	0.0304114	9.38062e-4	0.11845	0.0135546
chr17	57983793	57983893	6931882	0	-	0.34	(0.33,0.36]	chr17	706419	4	SS3_PROX	SS3_PROX:INTRON	VEZF1	ENSG00000136451.9	ENST00000581208.2:ENST00000584396.5:ENST00000583932.1	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.45733	4.460355	5.46338	0.0281891	0.0102015	0.114124	0.0678072
chr16	87919856	87919956	6657564	0	-	0.52	(0.485,0.523]	chr16	666059	146	INTRON	INTRON	CA5A	ENSG00000174990.8	ENST00000649158.1:ENST00000648177.1:ENST00000649794.3:ENST00000648022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	73	2	3.26255	4.46023	5.65791	0.0181582	0.0142848	0.0921579	0.0833845
chr11	47518569	47518668	5036059	0	-	0.40404	(0.39,0.419]	chr11	487589	38	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	3.59071	4.46021	5.32971	0.0390381	0.00792247	0.131575	0.057762
chr3	31980698	31980798	1730402	0	-	0.67	(0.58,1]	chr3	179064	4	SS5_PROX	SS5_PROX:INTRON	OSBPL10	ENSG00000144645.15	ENST00000396556.7:ENST00000438237.6:ENST00000480671.5:ENST00000479173.1:ENST00000452791.1:ENST00000465626.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	67	2	3.56821	4.4601750000000004	5.35214	0.0181452	0.00550024	0.0921579	0.0454065
chr13	98276898	98276998	5635000	0	+	0.32	(0.29,0.33]	chr13	553480	317	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.33251	4.460100000000001	4.58769	0.0806047	0.0396433	0.177452	0.143388
chr20	3493894	3493994	7419790	0	+	0.33	(0.29,0.33]	chr20	772906	220	INTRON	INTRON	ATRN	ENSG00000088812.18	ENST00000262919.10:ENST00000446916.2	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.33251	4.460100000000001	4.58769	0.0806047	0.0396433	0.177452	0.143388
chr6	34648781	34648880	3124795	0	-	0.30303	(0.29,0.33]	chr6	304716	16	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.33251	4.460100000000001	4.58769	0.0806047	0.0396433	0.177452	0.143388
chrX	109705182	109705282	8091187	0	-	0.31	(0.29,0.33]	chrX	843713	86	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000508092.5:ENST00000504383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.33251	4.460100000000001	4.58769	0.0806047	0.0396433	0.177452	0.143388
chr4	915197	915297	2178774	0	-	0.66	(0.58,1]	chr4	220691	3	SS5_PROX	SS5_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000512325.3:ENST00000510022.5:ENST00000511229.5:ENST00000511983.5:ENST00000628912.1:ENST00000513935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	67	2	3.44157	4.45998	5.47839	0.0145198	0.00760198	0.0823104	0.0561937
chr16	25149962	25150062	6426981	0	+	0.36	(0.33,0.36]	chr16	635901	94	INTRON	INTRON	LCMT1	ENSG00000205629.12	ENST00000380962.9:ENST00000564011.5:ENST00000380966.8:ENST00000399069.8:ENST00000577157.1:ENST00000576382.1:ENST00000576625.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.211	4.45997	4.70894	0.0798152	0.0541541	0.176933	0.167824
chr17	15464164	15464264	6860076	0	-	0.57	(0.523,0.58]	chr17	695067	107	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	122	2	2.27461	4.45993	6.64525	0.0797024	1.40789e-4	0.176933	0.00351181
chr7	139682268	139682368	3722968	0	-	0.5	(0.485,0.523]	chr7	357498	502	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	3.07952	4.45983	5.84014	0.0436257	0.00139792	0.139286	0.0179863
chr17	44047938	44048037	6910396	0	-	0.50505	(0.485,0.523]	chr17	703395	73	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	1	89	2	2.74113	4.459415	6.1777	0.0719691	5.64449e-4	0.168159	0.00950156
chr22	42986534	42986634	7823998	0	-	0.52	(0.485,0.523]	chr22	820626	268	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	89	2	2.74113	4.459415	6.1777	0.0719691	5.64449e-4	0.168159	0.00950156
chr1	40654623	40654723	452612	0	-	0.52	(0.485,0.523]	chr1	54553	64	INTRON	INTRON	RIMS3	ENSG00000117016.10	ENST00000372684.8:ENST00000372683.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.33772	4.45936	4.581	0.085711	0.03818	0.181766	0.140822
chr11	8727981	8728079	4987488	0	-	0.489796	(0.485,0.523]	chr11	482756	14	INTRON	INTRON	DENND2B	ENSG00000166444.19	ENST00000534127.5:ENST00000526757.5:ENST00000313726.11:ENST00000530438.5:ENST00000532734.5:ENST00000626808.2:ENST00000528527.5:ENST00000533425.5:ENST00000526057.5:ENST00000528196.5:ENST00000527510.5:ENST00000530580.5:ENST00000532651.5:ENST00000531093.5:ENST00000533225.5:ENST00000526126.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.33772	4.45936	4.581	0.085711	0.03818	0.181766	0.140822
chr11	9762191	9762291	4797612	0	+	0.49	(0.485,0.523]	chr11	460091	33	INTRON	INTRON	SBF2-AS1	ENSG00000246273.8	ENST00000663578.1:ENST00000498905.2:ENST00000527406.1:ENST00000499953.6:ENST00000650092.1:ENST00000658574.1:ENST00000664105.1	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	4.33772	4.45936	4.581	0.085711	0.03818	0.181766	0.140822
chr11	65085477	65085571	4869632	0	+	0.5	(0.485,0.523]	chr11	467665	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ZFPL1	ENSG00000162300.13	ENST00000650243.1:ENST00000294258.8:ENST00000531761.5:ENST00000453524.6:ENST00000526289.5:ENST00000526334.5:ENST00000526440.1:ENST00000533216.1:ENST00000526945.5:ENST00000532200.1:ENST00000530488.1:ENST00000530744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.33772	4.45936	4.581	0.085711	0.03818	0.181766	0.140822
chr17	748597	748691	6824473	0	-	0.521277	(0.485,0.523]	chr17	689919	7	UTR5	UTR5:EXON_MRNA:INTRON	GEMIN4	ENSG00000179409.11	ENST00000319004.6:ENST00000576778.1:ENST00000437269.1:ENST00000573482.5:ENST00000570364.5:ENST00000576383.1:ENST00000574958.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.33772	4.45936	4.581	0.085711	0.03818	0.181766	0.140822
chr19	18363190	18363290	7223700	0	+	0.52	(0.485,0.523]	chr19	739110	4	SS3_PROX	SS3_PROX:INTRON	PGPEP1	ENSG00000130517.14	ENST00000269919.11:ENST00000604499.6:ENST00000252813.5:ENST00000596962.5:ENST00000600283.6:ENST00000597431.2:ENST00000597663.2:ENST00000595552.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.33772	4.45936	4.581	0.085711	0.03818	0.181766	0.140822
chr20	32477122	32477220	7543639	0	-	0.520408	(0.485,0.523]	chr20	787372	20	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.33772	4.45936	4.581	0.085711	0.03818	0.181766	0.140822
chr6	2469027	2469127	2826630	0	+	0.51	(0.485,0.523]	chr6	277327	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GMDS-DT	ENSG00000250903.10	ENST00000657072.1:ENST00000659523.1:ENST00000659643.1:ENST00000660978.1:ENST00000691547.1:ENST00000654526.1:ENST00000670895.1:ENST00000657589.1:ENST00000607519.2:ENST00000662000.1:ENST00000655727.1:ENST00000606884.1	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	4.33772	4.45936	4.581	0.085711	0.03818	0.181766	0.140822
chr1	822809	822909	379738	0	-	0.61	(0.58,1]	chr1	42663	443	INTRON	INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000634337.2:ENST00000635509.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	0	32	2	4.29454	4.4592849999999995	4.62403	0.0578275	0.0305531	0.154343	0.126768
chr1	3892643	3892740	386348	0	-	0.597938	(0.58,1]	chr1	44329	10	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	C1orf174	ENSG00000198912.12	ENST00000474140.1:ENST00000486765.5:ENST00000361605.4:ENST00000679703.1:ENST00000680054.1:ENST00000680279.1:ENST00000681823.1:ENST00000679946.1:ENST00000680169.1:ENST00000680535.1:ENST00000679929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.29454	4.4592849999999995	4.62403	0.0578275	0.0305531	0.154343	0.126768
chr1	12601395	12601495	402618	0	-	0.59	(0.58,1]	chr1	46226	52	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.29454	4.4592849999999995	4.62403	0.0578275	0.0305531	0.154343	0.126768
chr1	226979385	226979482	355994	0	+	0.628866	(0.58,1]	chr1	40175	15	INTRON	INTRON	COQ8A	ENSG00000163050.18	ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000485462.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.29454	4.4592849999999995	4.62403	0.0578275	0.0305531	0.154343	0.126768
chr17	81140797	81140897	6982910	0	-	0.76	(0.58,1]	chr17	713268	59	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.29454	4.4592849999999995	4.62403	0.0578275	0.0305531	0.154343	0.126768
chr17	81208132	81208230	6983390	0	-	0.602041	(0.58,1]	chr17	713387	5	INTRON	INTRON	CEP131	ENSG00000141577.14	ENST00000374782.7:ENST00000269392.8:ENST00000450824.7:ENST00000575907.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.29454	4.4592849999999995	4.62403	0.0578275	0.0305531	0.154343	0.126768
chr19	47672854	47672954	7278345	0	+	0.63	(0.58,1]	chr19	747629	649	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.29454	4.4592849999999995	4.62403	0.0578275	0.0305531	0.154343	0.126768
chr2	233166521	233166621	1058291	0	+	0.61	(0.58,1]	chr2	115120	17	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493078.1:ENST00000472517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	32	2	4.29454	4.4592849999999995	4.62403	0.0578275	0.0305531	0.154343	0.126768
chr3	126469600	126469700	1907571	0	-	0.61	(0.58,1]	chr3	193585	29	INTRON	INTRON	ZXDC	ENSG00000070476.15	ENST00000389709.8:ENST00000515545.5:ENST00000336332.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.29454	4.4592849999999995	4.62403	0.0578275	0.0305531	0.154343	0.126768
chr9	133690827	133690927	4427471	0	-	0.6	(0.58,1]	chr9	423044	3	SS3_PROX	SS3_PROX:INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000371868.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.29454	4.4592849999999995	4.62403	0.0578275	0.0305531	0.154343	0.126768
chr17	55313728	55313828	6757601	0	+	0.54	(0.523,0.58]	chr17	681718	244	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	155	2	1.99165	4.459239999999999	6.92683	0.037452	0.00188118	0.139793	0.0270971
chr10	132555157	132555257	4617012	0	+	0.64	(0.58,1]	chr10	441139	166	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.1491	4.45922	5.76934	0.0154006	0.00849371	0.0869771	0.0617717
chr2	42199129	42199229	773338	0	+	0.39	(0.36,0.39]	chr2	88922	291	INTRON	INTRON	EML4	ENSG00000143924.19	ENST00000318522.10:ENST00000402711.6:ENST00000409040.1:ENST00000482660.1:ENST00000401738.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	108	2	2.50047	4.458785	6.4171	0.033505	0.00699528	0.133139	0.0555241
chr11	70803523	70803622	5062318	0	-	0.474747	(0.45,0.485]	chr11	492707	46	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5:ENST00000460048.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.41963	4.458745	4.49786	0.101311	0.0355247	0.196131	0.137983
chr12	31054682	31054782	5405402	0	-	0.48	(0.45,0.485]	chr12	529399	29	INTRON	INTRON	DDX11-AS1	ENSG00000245614.5	ENST00000669174.1:ENST00000685910.1:ENST00000500527.1:ENST00000535870.1	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	4.41963	4.458745	4.49786	0.101311	0.0355247	0.196131	0.137983
chr12	49222705	49222805	5224395	0	+	0.48	(0.45,0.485]	chr12	507012	134	INTRON	INTRON	TUBA1C	ENSG00000167553.17	ENST00000550574.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	33	2	4.41963	4.458745	4.49786	0.101311	0.0355247	0.196131	0.137983
chr13	50641792	50641892	5599045	0	+	0.47	(0.45,0.485]	chr13	551695	103	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	4.41963	4.458745	4.49786	0.101311	0.0355247	0.196131	0.137983
chr18	70301757	70301857	7087807	0	+	0.47	(0.45,0.485]	chr18	722186	47	INTRON	INTRON	SOCS6	ENSG00000170677.6	ENST00000397942.4:ENST00000578377.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.41963	4.458745	4.49786	0.101311	0.0355247	0.196131	0.137983
chr18	74835113	74835213	7091628	0	+	0.48	(0.45,0.485]	chr18	722438	306	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.41963	4.458745	4.49786	0.101311	0.0355247	0.196131	0.137983
chr3	4407066	4407166	1677223	0	-	0.48	(0.45,0.485]	chr3	175323	303	INTRON	INTRON	SUMF1	ENSG00000144455.14	ENST00000448413.5:ENST00000272902.10:ENST00000383843.9:ENST00000458465.6:ENST00000405420.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.41963	4.458745	4.49786	0.101311	0.0355247	0.196131	0.137983
chr4	10100034	10100133	2195650	0	-	0.474747	(0.45,0.485]	chr4	222412	5	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.41963	4.458745	4.49786	0.101311	0.0355247	0.196131	0.137983
chr4	37841826	37841923	2027791	0	+	0.484536	(0.45,0.485]	chr4	207056	12	INTRON	INTRON	PGM2	ENSG00000169299.14	ENST00000381967.9:ENST00000515668.5:ENST00000505986.5:ENST00000512556.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.41963	4.458745	4.49786	0.101311	0.0355247	0.196131	0.137983
chr5	59656578	59656678	2670704	0	-	0.47	(0.45,0.485]	chr5	264360	702	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000507116.5:ENST00000502484.6:ENST00000309641.10:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.41963	4.458745	4.49786	0.101311	0.0355247	0.196131	0.137983
chr5	139137974	139138073	2772087	0	-	0.464646	(0.45,0.485]	chr5	272010	1	INTRON	INTRON	SIL1	ENSG00000120725.13	ENST00000394817.7:ENST00000265195.9:ENST00000509534.5:ENST00000508639.5:ENST00000507002.5:ENST00000505830.5:ENST00000505353.1:ENST00000504666.5:ENST00000509400.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.41963	4.458745	4.49786	0.101311	0.0355247	0.196131	0.137983
chr6	12061117	12061217	2854630	0	+	0.47	(0.45,0.485]	chr6	278961	220	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.41963	4.458745	4.49786	0.101311	0.0355247	0.196131	0.137983
chr7	134987001	134987101	3496124	0	+	0.46	(0.45,0.485]	chr7	337005	3	SS5_PROX	SS5_PROX:INTRON	AGBL3	ENSG00000146856.14	ENST00000436302.6:ENST00000435976.6:ENST00000275763.10:ENST00000455283.2:ENST00000476700.5:ENST00000494702.2:ENST00000470839.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.41963	4.458745	4.49786	0.101311	0.0355247	0.196131	0.137983
chr8	128938680	128938780	4070349	0	-	0.47	(0.45,0.485]	chr8	387548	174	INTRON	INTRON	CCDC26	ENSG00000229140.11	ENST00000643616.1:ENST00000675388.1:ENST00000676248.1:ENST00000676407.1:ENST00000674766.1:ENST00000644557.1:ENST00000630386.2	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	4.41963	4.458745	4.49786	0.101311	0.0355247	0.196131	0.137983
chr11	70631429	70631529	5060587	0	-	0.49	(0.485,0.523]	chr11	492663	1281	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	94	2	3.51828	4.458485	5.39869	0.0214738	0.00421243	0.100517	0.0380601
chr22	28917781	28917881	7705619	0	+	0.59	(0.58,1]	chr22	806320	3	SS5_PROX	SS5_PROX:INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7:ENST00000402174.5	protein_coding	protein_coding	protein_coding	protein_coding	3	108	2	2.99139	4.458335	5.92528	0.0062948	0.00452153	0.0523832	0.0400651
chr1	24424108	24424208	61543	0	+	0.45	(0.419,0.45]	chr1	6582	21	INTRON	INTRON	NIPAL3	ENSG00000001461.17	ENST00000374399.9:ENST00000003912.7:ENST00000358028.8:ENST00000339255.2	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.29342	4.458075	4.62273	0.103601	0.0526662	0.197541	0.167062
chr1	93105642	93105741	183978	0	+	0.424242	(0.419,0.45]	chr1	19867	243	INTRON	INTRON	MTF2	ENSG00000143033.18	ENST00000540243.5:ENST00000545708.5:ENST00000474314.6:ENST00000370298.9:ENST00000473430.5:ENST00000494963.5:ENST00000471953.5:ENST00000370303.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.29342	4.458075	4.62273	0.103601	0.0526662	0.197541	0.167062
chr16	81360115	81360214	6507424	0	+	0.424242	(0.419,0.45]	chr16	645867	18	INTRON	INTRON	GAN	ENSG00000261609.8	ENST00000648349.2:ENST00000648994.2:ENST00000650388.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.29342	4.458075	4.62273	0.103601	0.0526662	0.197541	0.167062
chr22	42987233	42987332	7824005	0	-	0.383838	(0.36,0.39]	chr22	820626	275	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	105	2	3.27891	4.458055	5.6372	0.024533	0.00594355	0.106796	0.0479866
chr8	26588274	26588374	3779836	0	+	0.52	(0.485,0.523]	chr8	364064	39	INTRON	INTRON	DPYSL2	ENSG00000092964.18	ENST00000521913.7:ENST00000311151.9:ENST00000523027.1	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	2.60361	4.4578750000000005	6.31214	0.0541523	0.00589975	0.167824	0.0506158
chr2	203350855	203350954	1000625	0	+	0.414141	(0.39,0.419]	chr2	109842	83	INTRON	INTRON	ABI2	ENSG00000138443.17	ENST00000261017.9:ENST00000447762.5:ENST00000416001.5:ENST00000430418.5:ENST00000295851.10:ENST00000261018.12:ENST00000425253.1:ENST00000424558.5:ENST00000413635.5:ENST00000431886.5:ENST00000444584.1:ENST00000417864.5:ENST00000494215.1:ENST00000376135.5:ENST00000422511.6:ENST00000261016.11	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	35	2	4.09132	4.457855	4.82439	0.0762206	0.0689553	0.193274	0.174484
chr21	17524656	17524756	7599985	0	+	0.41	(0.39,0.419]	chr21	794111	111	INTRON	INTRON	CXADR	ENSG00000154639.19	ENST00000284878.12:ENST00000400166.5:ENST00000400169.1:ENST00000400165.5:ENST00000356275.10	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.09132	4.457855	4.82439	0.0762206	0.0689553	0.193274	0.174484
chr2	186213220	186213320	1339437	0	-	0.42	(0.419,0.45]	chr2	142319	342	INTRON	INTRON	LINC01473	ENSG00000237877.7	ENST00000658984.1:ENST00000658990.1:ENST00000655126.1:ENST00000667839.1:ENST00000670612.1:ENST00000668985.1:ENST00000661574.1:ENST00000666677.1:ENST00000665629.1:ENST00000419719.2:ENST00000667056.1:ENST00000671599.1	lncRNA	lncRNA	lncRNA	lncRNA	1	78	2	3.59354	4.457745	5.32195	0.0431627	0.00820853	0.138403	0.0592025
chr14	54626391	54626491	5820037	0	+	0.38	(0.36,0.39]	chr14	569049	579	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	107	2	2.53819	4.457275	6.37636	0.0310559	0.00749622	0.127822	0.0576451
chr11	70701862	70701962	5061299	0	-	0.53	(0.523,0.58]	chr11	492696	27	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.13061	4.457224999999999	4.78384	0.0663135	0.0533354	0.167062	0.162385
chr11	70946309	70946409	5063754	0	-	0.54	(0.523,0.58]	chr11	492740	494	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000618363.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.13061	4.457224999999999	4.78384	0.0663135	0.0533354	0.167062	0.162385
chr16	1731840	1731938	6371256	0	+	0.55102	(0.523,0.58]	chr16	628847	19	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.13061	4.457224999999999	4.78384	0.0663135	0.0533354	0.167062	0.162385
chr17	6862929	6863029	6675277	0	+	0.58	(0.523,0.58]	chr17	669304	36	INTRON	INTRON	ALOX12P2	ENSG00000262943.8	ENST00000574727.5:ENST00000691074.1:ENST00000685813.1:ENST00000574271.6:ENST00000576636.6:ENST00000570835.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	0	34	2	4.13061	4.457224999999999	4.78384	0.0663135	0.0533354	0.167062	0.162385
chr19	5288432	5288532	7316492	0	-	0.54	(0.523,0.58]	chr19	755347	18	INTRON	INTRON	PTPRS	ENSG00000105426.18	ENST00000588552.5:ENST00000262963.11:ENST00000591760.5:ENST00000586065.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.13061	4.457224999999999	4.78384	0.0663135	0.0533354	0.167062	0.162385
chr20	62277480	62277579	7506883	0	+	0.565657	(0.523,0.58]	chr20	782712	37	INTRON	INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.13061	4.457224999999999	4.78384	0.0663135	0.0533354	0.167062	0.162385
chr21	45434642	45434742	7630609	0	+	0.49	(0.485,0.523]	chr21	797656	288	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	3.12385	4.45676	5.78967	0.0193526	0.0146211	0.0994526	0.0826064
chr17	77375630	77375726	6804119	0	+	0.5625	(0.523,0.58]	chr17	686752	9	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1:ENST00000423034.6:ENST00000590059.5:ENST00000587514.1:ENST00000590586.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	72	2	3.4003	4.456385	5.51247	0.0230387	0.0103016	0.102982	0.0678983
chr6	34587982	34588081	3124185	0	-	0.616162	(0.58,1]	chr6	304700	8	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	1	82	2	3.40767	4.45632	5.50497	0.0197265	0.00187297	0.0958249	0.0219434
chr5	1326534	1326632	2609080	0	-	0.5	(0.485,0.523]	chr5	259719	2	INTRON	INTRON	CLPTM1L	ENSG00000049656.14	ENST00000320895.10:ENST00000507807.3:ENST00000503042.5:ENST00000630539.1:ENST00000503151.5:ENST00000508765.5:ENST00000513250.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	264	2	4.15548	4.45622	4.75696	0.00693242	6.96197e-5	0.0553898	0.00209728
chr8	13085320	13085418	3939337	0	-	0.428571	(0.419,0.45]	chr8	376628	21	UTR3	UTR3:EXON_MRNA	DLC1	ENSG00000164741.15	ENST00000276297.9:ENST00000358919.6	protein_coding	protein_coding	protein_coding	protein_coding	2	138	2	2.98599	4.456155	5.92632	0.0320293	0.00191339	0.121593	0.0223437
chr14	70023647	70023747	5872619	0	+	0.48	(0.45,0.485]	chr14	573362	2	SS5_PROX	SS5_PROX:INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	2.98123	4.4557850000000006	5.93034	0.0270875	0.0130794	0.119337	0.0782396
chr21	44871269	44871368	7678555	0	-	0.646465	(0.58,1]	chr21	802773	53	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	291	2	3.36175	4.4557649999999995	5.54978	0.00339734	0.00165911	0.0372988	0.0202545
chr1	243438551	243438651	370019	0	+	0.5	(0.485,0.523]	chr1	41877	116	INTRON	INTRON	SDCCAG8	ENSG00000054282.16	ENST00000366541.8:ENST00000435549.1:ENST00000463042.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.12717	4.455715	4.78426	0.0660335	0.0545434	0.167824	0.162385
chr10	79111322	79111422	4532468	0	+	0.49	(0.485,0.523]	chr10	432420	417	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.12717	4.455715	4.78426	0.0660335	0.0545434	0.167824	0.162385
chr10	132552559	132552659	4616986	0	+	0.52	(0.485,0.523]	chr10	441139	140	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.12717	4.455715	4.78426	0.0660335	0.0545434	0.167824	0.162385
chr10	132596423	132596523	4617425	0	+	0.5	(0.485,0.523]	chr10	441139	579	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.12717	4.455715	4.78426	0.0660335	0.0545434	0.167824	0.162385
chr16	81454624	81454724	6507837	0	+	0.49	(0.485,0.523]	chr16	645906	87	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.12717	4.455715	4.78426	0.0660335	0.0545434	0.167824	0.162385
chr17	9413719	9413819	6853388	0	-	0.52	(0.485,0.523]	chr17	694499	347	INTRON	INTRON	STX8	ENSG00000170310.15	ENST00000306357.9:ENST00000575858.5:ENST00000570583.5:ENST00000574431.5:ENST00000575294.6:ENST00000574775.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.12717	4.455715	4.78426	0.0660335	0.0545434	0.167824	0.162385
chr21	45495643	45495741	7678860	0	-	0.489796	(0.485,0.523]	chr21	802845	22	UTR3	UTR3:EXON_MRNA	SLC19A1	ENSG00000173638.19	ENST00000417954.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.12717	4.455715	4.78426	0.0660335	0.0545434	0.167824	0.162385
chr5	74661528	74661628	2455112	0	+	0.49	(0.485,0.523]	chr5	245132	206	INTRON	INTRON	HEXB	ENSG00000049860.14	ENST00000511181.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.12717	4.455715	4.78426	0.0660335	0.0545434	0.167824	0.162385
chr5	140111938	140112037	2550053	0	+	0.50505	(0.485,0.523]	chr5	253206	27	INTRON	INTRON	PURA	ENSG00000185129.8	ENST00000505703.2:ENST00000651386.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.12717	4.455715	4.78426	0.0660335	0.0545434	0.167824	0.162385
chrX	48941907	48942006	8040894	0	-	0.515152	(0.485,0.523]	chrX	838808	52	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.12717	4.455715	4.78426	0.0660335	0.0545434	0.167824	0.162385
chr17	43545015	43545115	6739015	0	+	0.57	(0.523,0.58]	chr17	678632	2	SS5_PROX	SS5_PROX:INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	10	811	2	4.39505	4.45568	4.51631	7.30667e-4	3.58135e-5	0.0159455	0.00128261
chr6	129673873	129673973	3259554	0	-	0.37	(0.36,0.39]	chr6	315424	315	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	3.45756	4.455579999999999	5.4536	0.0321864	0.0106804	0.121593	0.0700154
chr20	44424552	44424639	7483174	0	+	0.344828	(0.33,0.36]	chr20	779690	3	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000619550.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	201	2	4.12577	4.455315000000001	4.78486	0.0081886	3.34054e-4	0.0607268	0.00655409
chr16	85375042	85375142	6516821	0	+	0.61	(0.58,1]	chr16	646391	157	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	3.70825	4.45524	5.20223	0.0111705	0.00411607	0.0716525	0.0374453
chr2	235546033	235546133	1063058	0	+	0.49	(0.485,0.523]	chr2	115656	211	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	77	2	2.91537	4.455055	5.99474	0.0298565	0.0103305	0.126732	0.0684871
chr11	64144363	64144463	5049021	0	-	0.55	(0.523,0.58]	chr11	490257	176	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	72	2	3.51663	4.45495	5.39327	0.0277354	0.00782908	0.112851	0.0574276
chr2	152499351	152499451	927105	0	+	0.53	(0.523,0.58]	chr2	103058	1633	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	3.51663	4.45495	5.39327	0.0277354	0.00782908	0.112851	0.0574276
chr2	235521625	235521725	1062812	0	+	0.42	(0.419,0.45]	chr2	115651	264	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	80	2	2.9727	4.454945	5.93719	0.0303302	0.0176643	0.126768	0.0909046
chr1	43563409	43563508	107073	0	+	0.525253	(0.523,0.58]	chr1	13192	91	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	97	2	2.88829	4.45483	6.02137	0.0126903	0.00992924	0.0772455	0.0671959
chr10	18573656	18573756	4642465	0	-	0.38	(0.36,0.39]	chr10	443321	213	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	95	2	3.29013	4.45471	5.61929	0.0356209	0.00359045	0.127588	0.0342681
chr18	6118108	6118208	7110895	0	-	0.47	(0.45,0.485]	chr18	723846	242	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000400105.6:ENST00000317931.12:ENST00000400104.7	protein_coding	protein_coding	protein_coding	protein_coding	2	213	2	4.24796	4.454655	4.66135	0.00296361	0.00132616	0.0346628	0.0173248
chr12	132510916	132511010	5352722	0	+	0.617021	(0.58,1]	chr12	523657	6	UTR3	UTR3:EXON_MRNA:INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1:ENST00000542061.2	protein_coding	protein_coding	protein_coding	protein_coding	4	320	2	4.32566	4.454535	4.58341	6.57054e-4	1.54516e-4	0.0150669	0.00376396
chr1	23110548	23110648	422837	0	-	0.51	(0.485,0.523]	chr1	49676	5	INTRON	INTRON	LUZP1	ENSG00000169641.14	ENST00000302291.8:ENST00000314174.5:ENST00000471849.5:ENST00000475164.2	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	3.13862	4.453955	5.76929	0.0398026	0.00167976	0.133884	0.0203806
chr11	70586329	70586429	5060136	0	-	0.6	(0.58,1]	chr11	492663	830	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	67	2	3.35051	4.453659999999999	5.55681	0.0126042	0.00953058	0.0761905	0.0650078
chr11	64145359	64145459	5049031	0	-	0.52	(0.485,0.523]	chr11	490257	186	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	75	2	3.83677	4.45338	5.06999	0.0445854	0.00360381	0.140478	0.0342681
chr19	38679523	38679623	7258159	0	+	0.48	(0.45,0.485]	chr19	743980	309	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	199	2	4.29692	4.4531600000000005	4.6094	0.00586251	4.87276e-4	0.0506158	0.00859082
chr17	72555928	72556028	6963870	0	-	0.35	(0.33,0.36]	chr17	710389	215	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	2	105	2	3.40393	4.45298	5.50203	0.0265895	0.0041141	0.111433	0.0374453
chr2	78139729	78139829	1208847	0	-	0.34	(0.33,0.36]	chr2	130071	1995	INTRON	INTRON	ENSG00000227088	ENSG00000227088.2	ENST00000667782.1	lncRNA	lncRNA	lncRNA	lncRNA	2	105	2	3.40393	4.45298	5.50203	0.0265895	0.0041141	0.111433	0.0374453
chr1	44520125	44520225	113204	0	+	0.54	(0.523,0.58]	chr1	14018	1004	INTRON	INTRON	RNF220	ENSG00000187147.18	ENST00000355387.6:ENST00000361799.7:ENST00000372247.6	protein_coding	protein_coding	protein_coding	protein_coding	3	208	2	3.551	4.45276	5.35452	0.00650119	0.00453096	0.0532642	0.0400651
chr19	39144719	39144819	7259454	0	+	0.47	(0.45,0.485]	chr19	744153	184	INTRON	INTRON	PAK4	ENSG00000130669.17	ENST00000602004.1:ENST00000599470.5:ENST00000360442.8:ENST00000321944.8:ENST00000593480.5:ENST00000358301.7:ENST00000597766.1:ENST00000593690.5:ENST00000599386.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	76	2	3.03233	4.45238	5.87243	0.0244076	0.0143887	0.113311	0.0821732
chr7	74500999	74501099	3391837	0	+	0.54	(0.523,0.58]	chr7	327343	465	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	3.55341	4.452325	5.35124	0.0295772	0.00716661	0.116079	0.0541871
chr16	81552979	81553079	6508823	0	+	0.52	(0.485,0.523]	chr16	645911	571	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.02337	4.45226	5.88115	0.023933	0.012541	0.111785	0.0761905
chr2	11578631	11578731	720659	0	+	0.58	(0.523,0.58]	chr2	84131	2	SS5_PROX	SS5_PROX:INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000263834.9:ENST00000389825.7:ENST00000381483.6:ENST00000234142.9	protein_coding	protein_coding	protein_coding	protein_coding	3	116	2	2.73046	4.452145	6.17383	0.0111452	0.00760615	0.071709	0.0579698
chr4	884586	884685	2178448	0	-	0.525253	(0.523,0.58]	chr4	220625	1	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5	protein_coding	protein_coding	protein_coding	protein_coding	3	116	2	2.73046	4.452145	6.17383	0.0111452	0.00760615	0.071709	0.0579698
chr3	13022695	13022795	1689363	0	-	0.53	(0.523,0.58]	chr3	176542	2	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	3.31719	4.451995	5.5868	0.020474	0.0124719	0.0979776	0.0765738
chr17	77351098	77351198	6803870	0	+	0.47	(0.45,0.485]	chr17	686742	269	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	197	2	4.16548	4.451795	4.73811	0.00745037	3.37138e-4	0.0576451	0.00660842
chr3	111149482	111149582	1532422	0	+	0.4	(0.39,0.419]	chr3	162883	16	INTRON	INTRON	NECTIN3	ENSG00000177707.11	ENST00000493615.5	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	3.8551	4.451625	5.04815	0.0572698	0.00424346	0.154343	0.0383199
chr5	177451576	177451675	2600321	0	+	0.636364	(0.58,1]	chr5	258321	28	INTRON	INTRON	PRR7	ENSG00000131188.12	ENST00000507881.5:ENST00000323249.8:ENST00000502922.5:ENST00000510492.1	protein_coding	protein_coding	protein_coding	protein_coding	2	89	2	3.13356	4.4514499999999995	5.76934	0.00849371	0.00559148	0.0617717	0.0460395
chr10	38018185	38018285	4478138	0	+	0.35	(0.33,0.36]	chr10	428207	4	INTRON	INTRON	ZNF33A	ENSG00000189180.16	ENST00000307441.13:ENST00000374618.7:ENST00000628825.2:ENST00000458705.6:ENST00000432900.7:ENST00000469037.2:ENST00000478556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.40703	4.4513750000000005	4.49572	0.103264	0.0390931	0.197541	0.142605
chr17	66315017	66315117	6783554	0	+	0.37	(0.36,0.39]	chr17	684226	85	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	79	2	3.80233	4.451365	5.1004	0.0526991	0.00480386	0.14912	0.0416515
chr16	16039682	16039781	6406906	0	+	0.414141	(0.39,0.419]	chr16	633041	27	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	76	2	3.26675	4.4513	5.63585	0.025023	0.01622	0.10758	0.0902823
chr1	48225787	48225886	120957	0	+	0.434343	(0.419,0.45]	chr1	15165	6	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	132	2	2.77087	4.45129	6.13171	0.044455	0.00115219	0.140478	0.0157112
chr6	130868528	130868622	3260219	0	-	0.276596	[0,0.29]	chr6	315458	11	EXON_MRNA	EXON_MRNA:INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000528282.5:ENST00000531410.5:ENST00000452150.6:ENST00000392427.7:ENST00000530757.5:ENST00000368128.6:ENST00000527411.5:ENST00000524581.5:ENST00000525271.5:ENST00000529208.5:ENST00000525193.5:ENST00000527659.5:ENST00000527017.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.14609	4.45118	4.75627	0.050276	0.0482299	0.159496	0.148161
chr9	134370872	134370971	4261132	0	+	0.656566	(0.58,1]	chr9	406311	439	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	84	2	3.5406	4.451065	5.36153	0.0154024	0.00273899	0.0849828	0.028553
chrX	133895759	133895859	8115125	0	-	0.4	(0.39,0.419]	chrX	845529	608	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	173	2	2.42721	4.45098	6.47475	0.0139731	0.00649594	0.0826664	0.0532359
chr8	22369835	22369935	3770046	0	+	0.51	(0.485,0.523]	chr8	362721	17	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	7	538	2	3.48077	4.45009	5.41941	0.00499911	8.29988e-6	0.0463896	4.498e-4
chr5	109702035	109702135	2503497	0	+	0.37	(0.36,0.39]	chr5	248829	111	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.20082	4.45007	4.69932	0.0877431	0.0581116	0.183437	0.175217
chr20	41560224	41560323	7564240	0	-	0.383838	(0.36,0.39]	chr20	790090	85	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	103	2	3.16297	4.45004	5.73711	0.0210765	0.00784771	0.0996078	0.0575542
chr11	70886406	70886506	5063151	0	-	0.44	(0.419,0.45]	chr11	492728	134	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000645599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	35	2	4.08324	4.449975	4.81671	0.08258	0.0727147	0.199502	0.179396
chr12	49374483	49374583	5225238	0	+	0.43	(0.419,0.45]	chr12	507159	28	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549538.5:ENST00000549412.5:ENST00000550643.5:ENST00000548654.5:ENST00000548710.5:ENST00000549179.5:ENST00000548377.5:ENST00000549298.5:ENST00000552918.6:ENST00000549375.5:ENST00000553127.5:ENST00000321898.10:ENST00000551540.5:ENST00000548777.5:ENST00000552171.1:ENST00000547865.5:ENST00000548388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	35	2	4.08324	4.449975	4.81671	0.08258	0.0727147	0.199502	0.179396
chr22	25469961	25470060	7701243	0	+	0.434343	(0.419,0.45]	chr22	805972	84	INTRON	INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000686640.1:ENST00000509460.3:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	35	2	4.08324	4.449975	4.81671	0.08258	0.0727147	0.199502	0.179396
chr3	129793109	129793209	1913758	0	-	0.44	(0.419,0.45]	chr3	194421	1045	INTRON	INTRON	TMCC1	ENSG00000172765.18	ENST00000393238.8:ENST00000426664.6:ENST00000648771.1:ENST00000505616.5	protein_coding	protein_coding	protein_coding	protein_coding	0	35	2	4.08324	4.449975	4.81671	0.08258	0.0727147	0.199502	0.179396
chr6	1873827	1873927	3081611	0	-	0.42	(0.419,0.45]	chr6	299482	1309	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	77	2	3.23773	4.449925	5.66212	0.0266819	0.0178095	0.111563	0.0943752
chr6	128053565	128053665	3252479	0	-	0.52	(0.485,0.523]	chr6	315116	439	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000415046.6:ENST00000524481.5:ENST00000531050.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	72	2	3.5054	4.4495450000000005	5.39369	0.0275819	0.00816275	0.112782	0.0589533
chr20	44403487	44403586	7482950	0	+	0.474747	(0.45,0.485]	chr20	779645	2	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	323	2	4.42484	4.449439999999999	4.47404	0.00422111	1.09767e-4	0.0421724	0.00294443
chr11	64149534	64149626	5049073	0	-	0.608696	(0.58,1]	chr11	490261	1	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5:ENST00000538595.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	67	2	3.68463	4.4492	5.21377	0.0230012	0.00404771	0.102982	0.0371291
chr16	89305232	89305288	6659863	0	-	0.696429	(0.58,1]	chr16	666662	1	CDS	CDS:UTR3:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1:ENST00000647539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	67	2	3.68463	4.4492	5.21377	0.0230012	0.00404771	0.102982	0.0371291
chr4	84875308	84875408	2273929	0	-	0.4	(0.39,0.419]	chr4	229353	143	INTRON	INTRON	WDFY3	ENSG00000163625.16	ENST00000295888.9:ENST00000426414.6:ENST00000509172.1:ENST00000502713.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.20027	4.449125	4.69798	0.088901	0.0583327	0.183874	0.175217
chr7	135446717	135446816	3718293	0	-	0.414141	(0.39,0.419]	chr7	357200	79	INTRON	INTRON	CNOT4	ENSG00000080802.20	ENST00000541284.6:ENST00000451834.5:ENST00000423368.6:ENST00000361528.8:ENST00000428680.6:ENST00000315544.6:ENST00000491203.5:ENST00000498534.5:ENST00000465721.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.20027	4.449125	4.69798	0.088901	0.0583327	0.183874	0.175217
chr6	166955555	166955627	3302050	0	-	0.597222	(0.58,1]	chr6	319754	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000358165.7:ENST00000683158.1:ENST00000683333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	230	2	4.29454	4.44898	4.60342	0.0305531	6.2734e-4	0.126768	0.0147128
chr8	140822306	140822406	4091336	0	-	0.4	(0.39,0.419]	chr8	388847	29	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000519654.5:ENST00000521059.5:ENST00000517887.5:ENST00000519993.5:ENST00000340930.7:ENST00000519419.5:ENST00000524202.5:ENST00000524357.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	93	2	3.13002	4.4489	5.76778	0.0456475	0.0025422	0.142336	0.0271978
chr15	43793972	43794068	6092365	0	+	0.479167	(0.45,0.485]	chr15	599703	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SERF2	ENSG00000140264.21	ENST00000381359.5:ENST00000630046.2:ENST00000249786.9:ENST00000409646.5:ENST00000409960.6:ENST00000445816.5:ENST00000409291.5:ENST00000339624.9:ENST00000409617.6:ENST00000448830.2:ENST00000403425.5:ENST00000402131.5:ENST00000430901.1:ENST00000409614.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.32491	4.448705	4.5725	0.0926859	0.0418883	0.188571	0.149021
chr16	18851366	18851466	6560272	0	-	0.47	(0.45,0.485]	chr16	654038	5	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.32491	4.448705	4.5725	0.0926859	0.0418883	0.188571	0.149021
chr2	8683495	8683584	713070	0	+	0.47191	(0.45,0.485]	chr2	83365	2	SS3_PROX	SS3_PROX:INTRON	ID2	ENSG00000115738.10	ENST00000234091.8:ENST00000396290.2:ENST00000472142.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.32491	4.448705	4.5725	0.0926859	0.0418883	0.188571	0.149021
chr20	5760325	5760424	7424109	0	+	0.464646	(0.45,0.485]	chr20	773452	31	INTRON	INTRON	SHLD1	ENSG00000171984.15	ENST00000378979.8:ENST00000303142.11:ENST00000445603.1:ENST00000442185.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.32491	4.448705	4.5725	0.0926859	0.0418883	0.188571	0.149021
chr22	28527063	28527163	7780301	0	-	0.47	(0.45,0.485]	chr22	815741	841	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.32491	4.448705	4.5725	0.0926859	0.0418883	0.188571	0.149021
chr4	98996626	98996713	2091719	0	+	0.482759	(0.45,0.485]	chr4	213134	4	INTRON	INTRON	METAP1	ENSG00000164024.12	ENST00000510209.5:ENST00000296411.11:ENST00000507537.5:ENST00000506238.5:ENST00000625963.1:ENST00000503247.5:ENST00000510107.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.32491	4.448705	4.5725	0.0926859	0.0418883	0.188571	0.149021
chr9	124487889	124487989	4402601	0	-	0.46	(0.45,0.485]	chr9	419805	45	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.32491	4.448705	4.5725	0.0926859	0.0418883	0.188571	0.149021
chr10	102649578	102649678	4576520	0	+	0.57	(0.523,0.58]	chr10	437283	3	SS5_PROX	SS5_PROX:INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1:ENST00000487927.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	72	2	3.58927	4.44861	5.30795	0.0315825	0.00656975	0.120781	0.0510026
chr6	16722871	16722971	3104074	0	-	0.35	(0.33,0.36]	chr6	300893	550	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6:ENST00000495178.1:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	78	2	3.838	4.4486	5.0592	0.0504445	0.00414833	0.148216	0.0377122
chr2	147848000	147848100	912509	0	+	0.35	(0.33,0.36]	chr2	102442	24	INTRON	INTRON	ACVR2A	ENSG00000121989.15	ENST00000535787.5:ENST00000487959.5:ENST00000462659.1:ENST00000404590.1:ENST00000241416.12:ENST00000465329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	76	2	3.08687	4.44838	5.80989	0.0227116	0.0164265	0.108285	0.0877406
chr5	60117785	60117885	2675322	0	-	0.4	(0.39,0.419]	chr5	264383	1287	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000502484.6:ENST00000509368.6:ENST00000509355.5:ENST00000506024.5:ENST00000506510.6:ENST00000511382.1:ENST00000505507.6:ENST00000514552.5:ENST00000515835.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	82	2	2.7933500000000002	4.4481850000000005	6.10302	0.0415789	0.0120635	0.148959	0.0745226
chr12	9113943	9114043	5368183	0	-	0.36	(0.33,0.36]	chr12	526444	4	SS3_PROX	SS3_PROX:INTRON	A2M	ENSG00000175899.15	ENST00000318602.12:ENST00000539638.5:ENST00000404455.2:ENST00000467091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	146	2	2.99659	4.448025	5.89946	0.0142052	0.00473179	0.0816536	0.0413976
chr2	119785771	119785871	883850	0	+	0.42	(0.419,0.45]	chr2	100104	138	INTRON	INTRON	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000460162.1:ENST00000420482.5:ENST00000460289.5:ENST00000488279.6:ENST00000485247.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	104	2	3.10514	4.44801	5.79088	0.022052	0.00938681	0.101502	0.064735
chr11	70787649	70787749	5062158	0	-	0.54	(0.523,0.58]	chr11	492701	698	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	93	2	3.49363	4.44794	5.40225	0.0224494	0.00404292	0.102751	0.0371291
chr1	12582558	12582657	402428	0	-	0.484848	(0.45,0.485]	chr1	46222	15	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	370	2	4.41101	4.44747	4.48393	0.00204595	1.85785e-4	0.0283511	0.00430133
chr6	157313883	157313983	3298430	0	-	0.62	(0.58,1]	chr6	319197	205	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	12	209	2	1.67332	4.44711	7.2209	0.039543	4.00118e-4	0.143388	0.0114335
chr6	24224188	24224287	3108984	0	-	0.383838	(0.36,0.39]	chr6	301412	187	INTRON	INTRON	DCDC2	ENSG00000146038.12	ENST00000378454.8	protein_coding	protein_coding	protein_coding	protein_coding	2	215	2	4.38964	4.447005	4.50437	0.0046437	0.00108674	0.0444515	0.0149957
chr17	80613695	80613795	6809590	0	+	0.57	(0.523,0.58]	chr17	687810	200	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	77	2	3.98894	4.44697	4.905	0.0563605	0.00237791	0.154188	0.026
chr22	23240218	23240318	7692587	0	+	0.38	(0.36,0.39]	chr22	805046	405	INTRON	INTRON	BCR	ENSG00000186716.21	ENST00000479188.5:ENST00000359540.7:ENST00000305877.13:ENST00000463770.5:ENST00000487679.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	78	2	3.00362	4.44662	5.88962	0.027769	0.0166261	0.12074	0.0884836
chr8	10767809	10767909	3935769	0	-	0.66	(0.58,1]	chr8	376214	15	INTRON	INTRON	PINX1	ENSG00000254093.9	ENST00000314787.8:ENST00000519088.5:ENST00000524114.5:ENST00000523559.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	73	2	4.13012	4.446479999999999	4.76284	0.0471737	0.00116063	0.143232	0.0157704
chr20	36859173	36859273	7557093	0	-	0.49	(0.485,0.523]	chr20	789156	2	SS5_PROX	SS5_PROX:INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	3.0179	4.446105	5.87431	0.0479403	0.00127835	0.144601	0.0168904
chr16	81681616	81681716	6510127	0	+	0.47	(0.45,0.485]	chr16	645979	26	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	3.1756	4.446095	5.71659	0.018513	0.0180699	0.0953579	0.0928429
chr19	13139189	13139287	7212645	0	+	0.571429	(0.523,0.58]	chr19	736450	9	UTR3	UTR3:EXON_MRNA	NACC1	ENSG00000160877.6	ENST00000292431.5	protein_coding	protein_coding	protein_coding	protein_coding	2	96	2	2.98195	4.44596	5.90997	0.012016	0.010154	0.0743424	0.0677546
chr1	94434050	94434150	187008	0	+	0.4	(0.39,0.419]	chr1	20293	10	INTRON	INTRON	ABCD3	ENSG00000117528.14	ENST00000370214.9:ENST00000647998.2:ENST00000315713.5:ENST00000468860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	78	2	3.74353	4.44588	5.14823	0.0501234	0.00554536	0.147892	0.0456911
chr11	61758536	61758636	4862554	0	+	0.56	(0.523,0.58]	chr11	466004	27	INTRON	INTRON	MYRF	ENSG00000124920.14	ENST00000278836.10:ENST00000537766.1:ENST00000265460.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.23973	4.4456500000000005	4.65157	0.0787008	0.0444247	0.175203	0.153511
chr11	70949406	70949506	5063785	0	-	0.58	(0.523,0.58]	chr11	492740	525	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000618363.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.23973	4.4456500000000005	4.65157	0.0787008	0.0444247	0.175203	0.153511
chr11	110267461	110267561	5124178	0	-	0.57	(0.523,0.58]	chr11	497356	22	INTRON	INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000530131.5:ENST00000534683.1:ENST00000532118.5:ENST00000528556.5:ENST00000533991.1:ENST00000533678.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.23973	4.4456500000000005	4.65157	0.0787008	0.0444247	0.175203	0.153511
chr3	107571445	107571544	1528082	0	+	0.525253	(0.523,0.58]	chr3	162447	447	INTRON	INTRON	BBX	ENSG00000114439.19	ENST00000415149.6:ENST00000402543.5:ENST00000325805.13:ENST00000485939.5:ENST00000427402.5:ENST00000416476.6:ENST00000454540.5:ENST00000449335.5:ENST00000431630.5:ENST00000458458.5:ENST00000456817.5:ENST00000456419.5:ENST00000402163.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.23973	4.4456500000000005	4.65157	0.0787008	0.0444247	0.175203	0.153511
chr6	28350006	28350067	2889173	0	+	0.57377	(0.523,0.58]	chr6	281296	2	UTR5	UTR5:EXON_MRNA	ZKSCAN3	ENSG00000189298.14	ENST00000252211.7:ENST00000377255.3:ENST00000341464.9	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.23973	4.4456500000000005	4.65157	0.0787008	0.0444247	0.175203	0.153511
chr20	36854389	36854489	7557045	0	-	0.6	(0.58,1]	chr20	789155	146	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	3.09824	4.4455350000000005	5.79283	0.0341637	8.4246e-4	0.125129	0.0125912
chr1	235217405	235217504	690072	0	-	0.30303	(0.29,0.33]	chr1	81281	30	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000471257.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	86	2	2.95538	4.44515	5.93492	0.0510239	0.00115909	0.148503	0.0157704
chr10	18574155	18574255	4642470	0	-	0.46	(0.45,0.485]	chr10	443321	218	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.11446	4.445085000000001	4.77571	0.0719884	0.0592571	0.176157	0.168159
chr12	112220286	112220385	5503241	0	-	0.474747	(0.45,0.485]	chr12	541894	4	INTRON	INTRON	HECTD4	ENSG00000173064.14	ENST00000550722.5:ENST00000377560.9:ENST00000682272.1:ENST00000550968.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	34	2	4.11446	4.445085000000001	4.77571	0.0719884	0.0592571	0.176157	0.168159
chr13	112975231	112975331	5655373	0	+	0.47	(0.45,0.485]	chr13	555120	54	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.11446	4.445085000000001	4.77571	0.0719884	0.0592571	0.176157	0.168159
chr17	644688	644788	6823623	0	-	0.47	(0.45,0.485]	chr17	689804	115	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000680944.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000681830.1:ENST00000679959.1:ENST00000680114.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000570650.2:ENST00000679680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.11446	4.445085000000001	4.77571	0.0719884	0.0592571	0.176157	0.168159
chr18	6041045	6041145	7110121	0	-	0.47	(0.45,0.485]	chr18	723828	84	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000400105.6:ENST00000317931.12:ENST00000400104.7	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.11446	4.445085000000001	4.77571	0.0719884	0.0592571	0.176157	0.168159
chr20	37394277	37394377	7473045	0	+	0.53	(0.523,0.58]	chr20	778186	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SRC	ENSG00000197122.13	ENST00000692112.1:ENST00000692423.1:ENST00000373578.7:ENST00000373567.6:ENST00000373558.2:ENST00000358208.9:ENST00000489153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	96	2	2.9514	4.44502	5.93864	0.0114442	0.0109262	0.0723462	0.0706366
chr5	109701835	109701935	2503495	0	+	0.4	(0.39,0.419]	chr5	248829	109	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	3.00168	4.44497	5.88826	0.0279244	0.0169925	0.121102	0.0889149
chr16	47214773	47214873	6583328	0	-	0.33	(0.29,0.33]	chr16	658281	518	INTRON	INTRON	ITFG1	ENSG00000129636.13	ENST00000568047.5:ENST00000320640.11:ENST00000537184.6:ENST00000542691.5:ENST00000567957.1:ENST00000544001.6:ENST00000565262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.2311	4.44489	4.65868	0.0735584	0.0471437	0.17026	0.156915
chr3	15814509	15814609	1698369	0	-	0.31	(0.29,0.33]	chr3	177580	2	SS3_PROX	SS3_PROX:INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000412318.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.2311	4.44489	4.65868	0.0735584	0.0471437	0.17026	0.156915
chrX	2907984	2908084	7968923	0	-	0.31	(0.29,0.33]	chrX	834401	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ARSD	ENSG00000006756.16	ENST00000381154.6:ENST00000458014.1:ENST00000495294.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.2311	4.44489	4.65868	0.0735584	0.0471437	0.17026	0.156915
chr10	103597620	103597720	4756058	0	-	0.6	(0.58,1]	chr10	454714	37	UTR3	UTR3:EXON_MRNA	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9	protein_coding	protein_coding	protein_coding	protein_coding	2	89	2	2.93515	4.444845	5.95454	0.00938921	0.0059453	0.064735	0.0506158
chr15	99567597	99567697	6198355	0	+	0.42	(0.419,0.45]	chr15	609952	6	INTRON	INTRON	MEF2A	ENSG00000068305.18	ENST00000560493.5:ENST00000354410.9:ENST00000558812.5:ENST00000558856.5:ENST00000685785.1:ENST00000559036.5:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000558049.5:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1:ENST00000559903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	82	2	2.81936	4.4446900000000005	6.07002	0.0405181	0.0143746	0.145945	0.0821732
chr14	55510467	55510567	5987259	0	-	0.49	(0.485,0.523]	chr14	587269	106	INTRON	INTRON	KTN1-AS1	ENSG00000186615.12	ENST00000554558.6	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	4.23628	4.4441299999999995	4.65198	0.0783889	0.045492200000000003	0.175203	0.154539
chr19	45622325	45622419	7388918	0	-	0.489362	(0.485,0.523]	chr19	767274	3	INTRON	INTRON	EML2	ENSG00000125746.18	ENST00000589876.5:ENST00000587152.6:ENST00000245925.8:ENST00000586195.5:ENST00000588308.5:ENST00000536630.5:ENST00000590819.5:ENST00000399594.7:ENST00000590575.5:ENST00000588272.1:ENST00000588000.5:ENST00000588610.5:ENST00000588496.5:ENST00000586902.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.23628	4.4441299999999995	4.65198	0.0783889	0.045492200000000003	0.175203	0.154539
chr2	168861298	168861398	1310131	0	-	0.51	(0.485,0.523]	chr2	140280	267	INTRON	INTRON	SPC25	ENSG00000152253.9	ENST00000479309.6	protein_coding	processed_transcript	protein_coding	processed_transcript	0	33	2	4.23628	4.4441299999999995	4.65198	0.0783889	0.045492200000000003	0.175203	0.154539
chr2	239274582	239274682	1391454	0	-	0.52	(0.485,0.523]	chr2	148740	230	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.23628	4.4441299999999995	4.65198	0.0783889	0.045492200000000003	0.175203	0.154539
chr9	129619516	129619615	4251026	0	+	0.515152	(0.485,0.523]	chr9	404743	100	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.23628	4.4441299999999995	4.65198	0.0783889	0.045492200000000003	0.175203	0.154539
chr6	144303082	144303182	3020038	0	+	0.45	(0.419,0.45]	chr6	295138	108	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1	protein_coding	protein_coding	protein_coding	protein_coding	2	107	2	2.54153	4.44393	6.34633	0.0316792	0.00923958	0.128518	0.0644666
chr2	3287416	3287516	1080981	0	-	0.51	(0.485,0.523]	chr2	117633	47	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	201	2	3.58354	4.443765	5.30399	0.0192242	5.34542e-5	0.0954446	0.0017251
chr6	7110200	7110299	2838101	0	+	0.353535	(0.33,0.36]	chr6	277918	11	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	106	2	2.46036	4.443675	6.42699	0.035284	0.00578704	0.137983	0.0501412
chr1	43598534	43598626	107438	0	+	0.597826	(0.58,1]	chr1	13245	6	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5:ENST00000496447.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	93	2	2.6194	4.44269	6.26598	0.0202577	0.00318361	0.102015	0.0360488
chr22	19422922	19423021	7763485	0	-	0.585859	(0.58,1]	chr22	813787	118	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	109	2	3.14885	4.442435	5.73602	0.00904546	0.00289683	0.0637469	0.029787
chr9	124258461	124258561	4235499	0	+	0.54	(0.523,0.58]	chr9	402075	1	SS5_PROX	SS5_PROX:INTRON	NEK6	ENSG00000119408.17	ENST00000373603.5:ENST00000540326.5:ENST00000320246.10:ENST00000373600.7:ENST00000545174.5:ENST00000444973.5:ENST00000454453.5	protein_coding	protein_coding	protein_coding	protein_coding	2	191	2	4.28968	4.441895	4.59411	0.00541927	4.40994e-4	0.048574	0.00800597
chr10	119896343	119896443	4597241	0	+	0.44	(0.419,0.45]	chr10	439450	30	INTRON	INTRON	SEC23IP	ENSG00000107651.14	ENST00000369075.8:ENST00000470478.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	77	2	3.56166	4.4418050000000004	5.32195	0.0431627	0.00882182	0.138403	0.061625
chr12	120854034	120854134	5523824	0	-	0.44	(0.419,0.45]	chr12	544174	185	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	3.56166	4.4418050000000004	5.32195	0.0431627	0.00882182	0.138403	0.061625
chr2	75547787	75547887	1194657	0	-	0.45	(0.419,0.45]	chr2	129875	212	INTRON	INTRON	EVA1A	ENSG00000115363.14	ENST00000485891.1:ENST00000490746.5:ENST00000233712.5:ENST00000393913.8:ENST00000410113.5:ENST00000410071.5:ENST00000432649.5:ENST00000486696.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	103	2	2.86526	4.441800000000001	6.01834	0.0160871	0.015582500000000001	0.0896852	0.0849828
chr9	91420255	91420354	4334181	0	-	0.313131	(0.29,0.33]	chr9	414047	90	INTRON	INTRON	NFIL3	ENSG00000165030.4	ENST00000297689.4	protein_coding	protein_coding	protein_coding	protein_coding	5	149	2	2.5638	4.441415	6.31903	0.0101459	0.0052024	0.0677334	0.0475031
chr3	177185183	177185283	1961288	0	-	0.38	(0.36,0.39]	chr3	199342	139	INTRON	INTRON	TBL1XR1	ENSG00000177565.18	ENST00000457928.7:ENST00000430069.5:ENST00000673974.1:ENST00000352800.10:ENST00000422442.6:ENST00000428970.5:ENST00000424913.5:ENST00000437738.5:ENST00000431421.5:ENST00000635794.1:ENST00000630796.2:ENST00000450267.5:ENST00000630833.2:ENST00000431674.5:ENST00000422066.5:ENST00000443315.5:ENST00000627825.2:ENST00000427349.5:ENST00000413084.5:ENST00000637137.1:ENST00000491623.2:ENST00000637544.1:ENST00000636187.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	102	2	3.11385	4.44139	5.76893	0.0200694	0.00881066	0.0971995	0.0616009
chr10	121770054	121770153	4775947	0	-	0.333333	(0.33,0.36]	chr10	456611	52	INTRON	INTRON	ATE1	ENSG00000107669.19	ENST00000690984.1:ENST00000369043.8:ENST00000224652.12:ENST00000693411.1:ENST00000540606.7:ENST00000690773.1:ENST00000686894.1:ENST00000685890.1:ENST00000687583.1:ENST00000693276.1:ENST00000686451.1:ENST00000687319.1:ENST00000686786.1:ENST00000684967.1:ENST00000689057.1:ENST00000692329.1:ENST00000689393.1:ENST00000689571.1:ENST00000692718.1:ENST00000688526.1:ENST00000692034.1:ENST00000690128.1:ENST00000690748.1:ENST00000692491.1:ENST00000369040.9:ENST00000691087.1:ENST00000691830.1:ENST00000687089.1:ENST00000693486.1:ENST00000690355.1:ENST00000691765.1:ENST00000691226.1:ENST00000692743.1:ENST00000691108.1:ENST00000689297.1:ENST00000685427.1:ENST00000692513.1:ENST00000688057.1:ENST00000684876.1:ENST00000687607.1:ENST00000688424.1:ENST00000692255.1:ENST00000690706.1:ENST00000693395.1:ENST00000690324.1:ENST00000692278.1:ENST00000687144.1:ENST00000691573.1:ENST00000685289.1:ENST00000686907.1:ENST00000687206.1:ENST00000685007.1:ENST00000686811.1:ENST00000691041.1:ENST00000423243.7:ENST00000689834.1:ENST00000689455.1:ENST00000693655.1:ENST00000691728.1:ENST00000688153.1:ENST00000689974.1:ENST00000689199.1:ENST00000690488.1:ENST00000687458.1:ENST00000685072.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.31234	4.441345	4.57035	0.0945416	0.0458858	0.188571	0.154743
chr12	1424013	1424112	5154634	0	+	0.353535	(0.33,0.36]	chr12	500915	53	INTRON	INTRON	ERC1	ENSG00000082805.21	ENST00000543086.7:ENST00000360905.9:ENST00000542302.6:ENST00000546231.6:ENST00000347735.10:ENST00000397203.7:ENST00000440394.7:ENST00000545948.5:ENST00000589028.6:ENST00000355446.9:ENST00000538971.6:ENST00000588412.5:ENST00000539802.2:ENST00000691140.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.31234	4.441345	4.57035	0.0945416	0.0458858	0.188571	0.154743
chr5	60226807	60226907	2676419	0	-	0.35	(0.33,0.36]	chr5	264416	380	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000502484.6:ENST00000509368.6:ENST00000509355.5:ENST00000506024.5:ENST00000506510.6:ENST00000511382.1:ENST00000505507.6:ENST00000514552.5:ENST00000515835.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.31234	4.441345	4.57035	0.0945416	0.0458858	0.188571	0.154743
chr6	98921003	98921103	3207945	0	-	0.36	(0.33,0.36]	chr6	311438	29	INTRON	INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.31234	4.441345	4.57035	0.0945416	0.0458858	0.188571	0.154743
chr8	98284421	98284521	4021505	0	-	0.36	(0.33,0.36]	chr8	384277	300	INTRON	INTRON	NIPAL2	ENSG00000104361.10	ENST00000430223.7:ENST00000341166.3:ENST00000519324.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.31234	4.441345	4.57035	0.0945416	0.0458858	0.188571	0.154743
chr9	101237397	101237497	4203619	0	+	0.36	(0.33,0.36]	chr9	399132	495	INTRON	INTRON	PLPPR1	ENSG00000148123.15	ENST00000374874.8:ENST00000456287.5:ENST00000395056.2	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.31234	4.441345	4.57035	0.0945416	0.0458858	0.188571	0.154743
chr1	9905803	9905903	398793	0	-	0.45	(0.419,0.45]	chr1	45393	127	INTRON	INTRON	CTNNBIP1	ENSG00000178585.15	ENST00000377263.6:ENST00000400904.7	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.19215	4.4412400000000005	4.69033	0.0958674	0.0617113	0.189038	0.18013
chr11	62569099	62569197	5044717	0	-	0.428571	(0.419,0.45]	chr11	489358	12	INTRON	INTRON	EEF1G	ENSG00000254772.10	ENST00000329251.5:ENST00000525340.5:ENST00000524420.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.19215	4.4412400000000005	4.69033	0.0958674	0.0617113	0.189038	0.18013
chr4	139314278	139314377	2132686	0	+	0.434343	(0.419,0.45]	chr4	216615	117	INTRON	INTRON	NAA15	ENSG00000164134.13	ENST00000296543.10:ENST00000398947.1:ENST00000482087.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.19215	4.4412400000000005	4.69033	0.0958674	0.0617113	0.189038	0.18013
chr9	137722361	137722461	4265514	0	+	0.44	(0.419,0.45]	chr9	407352	47	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000462484.5:ENST00000371394.6:ENST00000460843.6:ENST00000629335.2:ENST00000636027.1:ENST00000460486.3:ENST00000637161.1:ENST00000637261.1:ENST00000637977.1:ENST00000626066.2:ENST00000638071.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.19215	4.4412400000000005	4.69033	0.0958674	0.0617113	0.189038	0.18013
chr17	38726897	38726997	6729352	0	+	0.61	(0.58,1]	chr17	676371	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5:ENST00000619356.1:ENST00000615741.1:ENST00000615441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	432	2	4.08848	4.441075	4.79367	0.00123996	1.36869e-5	0.0214184	6.42801e-4
chr17	17736253	17736353	6689398	0	+	0.63	(0.58,1]	chr17	671344	117	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	2	92	2	2.66286	4.44069	6.21852	0.0183006	0.00350812	0.0958973	0.0379357
chr11	64306031	64306128	4868813	0	+	0.670103	(0.58,1]	chr11	467347	3	SS5_PROX	SS5_PROX:INTRON	ESRRA	ENSG00000173153.17	ENST00000406310.6:ENST00000000442.11:ENST00000677967.1:ENST00000539594.5	protein_coding	protein_coding	protein_coding	protein_coding	2	108	2	2.41557	4.440685	6.4658	0.0542363	1.09908e-4	0.15176	0.00294443
chr4	3179140	3179237	2003659	0	+	0.536082	(0.523,0.58]	chr4	204462	3	INTRON	INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000680291.1:ENST00000510626.5:ENST00000509043.1:ENST00000513326.5:ENST00000513639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	88	2	3.22074	4.440165	5.65959	0.0350559	0.0021416	0.12704	0.0240825
chr2	235522724	235522824	1062823	0	+	0.48	(0.45,0.485]	chr2	115651	275	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	93	2	3.40384	4.44016	5.47648	0.027533	0.0039628	0.112782	0.0368027
chr10	79203479	79203578	4533393	0	+	0.616162	(0.58,1]	chr10	432445	14	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.18518	4.4401399999999995	4.6951	0.0521567	0.0374658	0.148503	0.139793
chr11	61775855	61775955	4862735	0	+	0.62	(0.58,1]	chr11	466038	4	SS3_PROX	SS3_PROX:INTRON	MYRF	ENSG00000124920.14	ENST00000278836.10:ENST00000265460.9:ENST00000675319.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.18518	4.4401399999999995	4.6951	0.0521567	0.0374658	0.148503	0.139793
chr14	104778848	104778940	6057678	0	-	0.641304	(0.58,1]	chr14	594699	4	INTRON	INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000683722.1:ENST00000555528.5:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000554848.5:ENST00000682269.1:ENST00000555380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	32	2	4.18518	4.4401399999999995	4.6951	0.0521567	0.0374658	0.148503	0.139793
chr17	17722527	17722627	6689260	0	+	0.66	(0.58,1]	chr17	671338	376	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.18518	4.4401399999999995	4.6951	0.0521567	0.0374658	0.148503	0.139793
chr19	1163010	1163109	7305682	0	-	0.606061	(0.58,1]	chr19	753054	80	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5:ENST00000587655.2	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.18518	4.4401399999999995	4.6951	0.0521567	0.0374658	0.148503	0.139793
chr8	631236	631336	3932032	0	-	0.64	(0.58,1]	chr8	376005	36	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.18518	4.4401399999999995	4.6951	0.0521567	0.0374658	0.148503	0.139793
chr5	80652043	80652140	2713200	0	-	0.402062	(0.39,0.419]	chr5	267132	22	INTRON	INTRON	DHFR	ENSG00000228716.7	ENST00000439211.7:ENST00000505337.5:ENST00000511032.5:ENST00000504396.1:ENST00000513048.5:ENST00000508282.1:ENST00000513314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	77	2	3.68433	4.44006	5.19579	0.0469937	0.00637588	0.143232	0.0501889
chr2	27513889	27513989	735350	0	+	0.39	(0.36,0.39]	chr2	86184	42	INTRON	INTRON	GCKR	ENSG00000084734.9	ENST00000264717.7	protein_coding	protein_coding	protein_coding	protein_coding	1	96	2	3.38348	4.43995	5.49642	0.0308572	0.00476539	0.119556	0.0414441
chr10	100549632	100549731	4569162	0	+	0.59596	(0.58,1]	chr10	436105	16	UTR3	UTR3:EXON_MRNA	HIF1AN	ENSG00000166135.14	ENST00000299163.7	protein_coding	protein_coding	protein_coding	protein_coding	2	165	2	4.03107	4.4397199999999994	4.84837	0.00585987	1.2454e-4	0.0506158	0.00322977
chr18	76418565	76418665	7179305	0	-	0.4	(0.39,0.419]	chr18	730080	379	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	2	102	2	3.11175	4.43966	5.76757	0.0204917	0.00887797	0.0979776	0.0618231
chr1	1561943	1562042	381916	0	-	0.585859	(0.58,1]	chr1	43355	12	UTR3	UTR3:EXON_MRNA:INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3:ENST00000359060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	66	2	3.44157	4.439545	5.43752	0.0156166	0.00760198	0.0849828	0.0561937
chr20	36575148	36575248	7471320	0	+	0.54	(0.523,0.58]	chr20	777919	3	SS5_PROX	SS5_PROX:INTRON	TGIF2	ENSG00000118707.11	ENST00000373874.6:ENST00000373872.9:ENST00000650844.1:ENST00000611732.4:ENST00000558028.5:ENST00000560025.1	protein_coding	protein_coding	protein_coding	protein_coding	3	115	2	2.70525	4.43954	6.17383	0.0118488	0.00760615	0.0746945	0.0579698
chr19	1377845	1377942	7187276	0	+	0.628866	(0.58,1]	chr19	731231	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	PWWP3A	ENSG00000160953.17	ENST00000591337.7:ENST00000591806.6:ENST00000652273.1:ENST00000591453.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	83	2	2.56085	4.439525	6.3182	0.0803939	1.74994e-4	0.177452	0.00410754
chr3	31871845	31871944	1729307	0	-	0.414141	(0.39,0.419]	chr3	179034	205	INTRON	INTRON	OSBPL10	ENSG00000144645.15	ENST00000396556.7:ENST00000438237.6:ENST00000480671.5:ENST00000485205.5:ENST00000467955.5:ENST00000466604.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	77	2	3.04938	4.43928	5.82918	0.0253994	0.0186329	0.115502	0.0932878
chr17	314541	314640	6821421	0	-	0.585859	(0.58,1]	chr17	689582	80	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	90	2	2.7859	4.43923	6.09256	0.0136245	0.00452436	0.0811816	0.0436138
chr17	15467459	15467540	6860109	0	-	0.506173	(0.485,0.523]	chr17	695070	1	UTR5	UTR5:EXON_MRNA:INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	189	2	4.06697	4.43896	4.81095	0.00816193	2.40513e-4	0.0605492	0.00517788
chr19	17485005	17485101	7220783	0	+	0.625	(0.58,1]	chr19	738265	5	INTRON	INTRON	SLC27A1	ENSG00000130304.17	ENST00000600277.5:ENST00000598424.5:ENST00000252595.12:ENST00000599380.5:ENST00000600297.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	107	2	2.15496	4.438689999999999	6.72242	0.0548868	0.00121317	0.168717	0.0210863
chr10	87221255	87221355	4723355	0	-	0.47	(0.45,0.485]	chr10	450862	75	INTRON	INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6	lncRNA	lncRNA	lncRNA	lncRNA	1	75	2	3.76457	4.438435	5.1123	0.0458344	0.00463252	0.142336	0.0408278
chr18	74622683	74622783	7089498	0	+	0.49	(0.485,0.523]	chr18	722412	244	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000582337.5	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	3.61303	4.43839	5.26375	0.0335928	0.00630038	0.124319	0.0501647
chr10	79218173	79218273	4533543	0	+	0.47	(0.45,0.485]	chr10	432457	15	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	92	2	3.35641	4.43815	5.51989	0.0297105	0.00357389	0.116341	0.0342681
chr11	70586829	70586929	5060141	0	-	0.52	(0.485,0.523]	chr11	492663	835	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	72	2	3.21778	4.437845	5.65791	0.0181582	0.0157761	0.0921579	0.0884237
chr10	132754372	132754472	4619016	0	+	0.65	(0.58,1]	chr10	441201	5	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	3.56821	4.4378400000000005	5.30747	0.0196049	0.00550024	0.0955413	0.0454065
chr11	72701983	72702083	5069927	0	-	0.64	(0.58,1]	chr11	493378	2	SS3_PROX	SS3_PROX:INTRON	ARAP1	ENSG00000186635.15	ENST00000359373.9:ENST00000393609.8:ENST00000465814.5:ENST00000334211.12:ENST00000393605.7:ENST00000426523.5:ENST00000429686.5:ENST00000427971.6:ENST00000452383.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	66	2	3.56821	4.4378400000000005	5.30747	0.0196049	0.00550024	0.0955413	0.0454065
chr16	978353	978453	6531822	0	-	0.64	(0.58,1]	chr16	648726	75	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000545827.6:ENST00000570014.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	66	2	3.56821	4.4378400000000005	5.30747	0.0196049	0.00550024	0.0955413	0.0454065
chr11	86334205	86334304	4910257	0	+	0.353535	(0.33,0.36]	chr11	474087	72	INTRON	INTRON	HIKESHI	ENSG00000149196.17	ENST00000533986.5:ENST00000278483.8:ENST00000531485.5:ENST00000528004.5:ENST00000532270.5:ENST00000530208.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.102	4.437775	4.77355	0.0735809	0.0642879	0.184676	0.17026
chr6	42832564	42832664	2915969	0	+	0.36	(0.33,0.36]	chr6	286320	20	INTRON	INTRON	BICRAL	ENSG00000112624.13	ENST00000614467.4:ENST00000314073.10:ENST00000394168.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.102	4.437775	4.77355	0.0735809	0.0642879	0.184676	0.17026
chr2	36534768	36534867	759445	0	+	0.444444	(0.419,0.45]	chr2	88048	54	INTRON	INTRON	CRIM1	ENSG00000150938.10	ENST00000280527.7	protein_coding	protein_coding	protein_coding	protein_coding	1	84	2	2.7072600000000002	4.43769	6.16812	0.0496323	0.0123115	0.160725	0.0756356
chr10	86837164	86837264	4538813	0	+	0.36	(0.33,0.36]	chr10	432895	799	INTRON	INTRON	BMPR1A	ENSG00000107779.14	ENST00000638429.1:ENST00000372037.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	93	2	3.36841	4.437685	5.50696	0.0295712	0.00418696	0.116079	0.0379935
chr17	344018	344117	6821729	0	-	0.454545	(0.45,0.485]	chr17	689629	27	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000577079.5:ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.03233	4.437455	5.84258	0.0244076	0.0151085	0.113311	0.0841543
chr16	85515183	85515283	6518223	0	+	0.63	(0.58,1]	chr16	646391	1559	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	2.78186	4.43721	6.09256	0.0342923	0.00452436	0.13449	0.0436138
chr7	218954	219054	3305844	0	+	0.55	(0.523,0.58]	chr7	320161	96	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	3.4003	4.43706	5.47382	0.0244797	0.0103016	0.106683	0.0678983
chr4	113696259	113696359	2313781	0	-	0.41	(0.39,0.419]	chr4	232470	341	INTRON	INTRON	CAMK2D	ENSG00000145349.18	ENST00000683023.1:ENST00000296402.9:ENST00000511664.6:ENST00000394524.7:ENST00000342666.9:ENST00000514328.5:ENST00000515496.5:ENST00000394522.7:ENST00000505990.5:ENST00000379773.6:ENST00000508738.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	75	2	3.38301	4.436945	5.49088	0.0309972	0.0126232	0.119758	0.0768792
chr17	57476982	57477081	6761982	0	+	0.474747	(0.45,0.485]	chr17	682137	319	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	100	2	3.29511	4.436825000000001	5.57854	0.0230065	0.00504904	0.102982	0.0432173
chr5	10708171	10708271	2612118	0	-	0.31	(0.29,0.33]	chr5	260254	242	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	73	2	3.69617	4.436535	5.1769	0.035586	0.00527084	0.127529	0.044517
chr12	94347039	94347138	5473331	0	-	0.282828	[0,0.29]	chr12	538134	110	INTRON	INTRON	CEP83	ENSG00000173588.16	ENST00000397809.10:ENST00000339839.9:ENST00000547232.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.25528	4.436385	4.61749	0.061376	0.0399299	0.158506	0.144065
chr17	29690968	29691068	6878343	0	-	0.28	[0,0.29]	chr17	698235	59	INTRON	INTRON	SSH2	ENSG00000141298.19	ENST00000540801.6:ENST00000269033.7:ENST00000649863.1:ENST00000394848.5:ENST00000324677.12:ENST00000579040.5:ENST00000577483.1:ENST00000592397.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.25528	4.436385	4.61749	0.061376	0.0399299	0.158506	0.144065
chr7	6703372	6703470	3542747	0	-	0.397959	(0.39,0.419]	chr7	342318	26	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	3	276	2	4.39703	4.43638	4.47573	0.00497486	3.08069e-4	0.046333	0.00619999
chr18	47919272	47919371	7157574	0	-	0.424242	(0.419,0.45]	chr18	727768	69	INTRON	INTRON	SMAD2	ENSG00000175387.16	ENST00000262160.11:ENST00000402690.6:ENST00000356825.8:ENST00000591214.5:ENST00000587269.5:ENST00000586514.5:ENST00000587421.5:ENST00000589877.5:ENST00000585978.1	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	3.59354	4.436109999999999	5.27868	0.0457732	0.00820853	0.142336	0.0592025
chr10	114434972	114435071	4762113	0	-	0.40404	(0.39,0.419]	chr10	455500	40	UTR3	UTR3:EXON_MRNA	ABLIM1	ENSG00000099204.21	ENST00000533213.7:ENST00000392955.7:ENST00000392952.7	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.41977	4.436005	5.45224	0.032783	0.0116434	0.122593	0.0736274
chr17	29132905	29133002	6876492	0	-	0.56701	(0.523,0.58]	chr17	698000	11	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000590242.5:ENST00000528564.2:ENST00000528322.6:ENST00000585573.6:ENST00000533420.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	71	2	3.35934	4.435905	5.51247	0.0230387	0.0113252	0.102982	0.071894
chr20	6039154	6039254	7426018	0	+	0.53	(0.523,0.58]	chr20	773649	21	UTR3	UTR3:EXON_MRNA	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	3.35934	4.435905	5.51247	0.0230387	0.0113252	0.102982	0.071894
chr22	42945960	42946047	7823589	0	-	0.54023	(0.523,0.58]	chr22	820618	2	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000337959.8:ENST00000263246.8:ENST00000407585.5:ENST00000403744.7:ENST00000402229.5:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5:ENST00000453079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	71	2	3.35934	4.435905	5.51247	0.0230387	0.0113252	0.102982	0.071894
chr13	33262360	33262460	5685221	0	-	0.6	(0.58,1]	chr13	558196	565	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	88	2	3.03776	4.435755	5.83375	0.00751249	0.00720487	0.0576451	0.0543254
chr1	45201857	45201957	464536	0	-	0.37	(0.36,0.39]	chr1	55667	1133	INTRON	INTRON	ZSWIM5	ENSG00000162415.7	ENST00000359600.6:ENST00000464588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	75	2	3.45756	4.4357299999999995	5.4139	0.0340874	0.0106804	0.125059	0.0700154
chr12	132533166	132533266	5352947	0	+	0.66	(0.58,1]	chr12	523670	48	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	3.3216	4.43569	5.54978	0.0230709	0.00165911	0.102982	0.0202545
chr18	62916594	62916693	7082064	0	+	0.414141	(0.39,0.419]	chr18	722036	12	INTRON	INTRON	PHLPP1	ENSG00000081913.14	ENST00000262719.10:ENST00000591386.1:ENST00000591106.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	78	2	3.77224	4.43565	5.09906	0.0535378	0.00517927	0.150319	0.043878
chr2	161327257	161327356	939072	0	+	0.393939	(0.39,0.419]	chr2	103725	80	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	3.77224	4.43565	5.09906	0.0535378	0.00517927	0.150319	0.043878
chr10	74468965	74469065	4514869	0	+	0.36	(0.33,0.36]	chr10	431960	700	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	92	2	2.56404	4.43542	6.3068	0.0954498	5.61859e-4	0.189038	0.00948267
chr11	70744982	70745082	5061731	0	-	0.66	(0.58,1]	chr11	492701	271	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	69	2	3.03676	4.435255	5.83375	0.0198789	0.00751249	0.100864	0.0576451
chr18	77119024	77119124	7181511	0	-	0.61	(0.58,1]	chr18	730186	134	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1:ENST00000583798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	69	2	3.03676	4.435255	5.83375	0.0198789	0.00751249	0.100864	0.0576451
chr6	169696462	169696562	3304859	0	-	0.47	(0.45,0.485]	chr6	319967	10	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1:ENST00000474018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	73	2	3.57078	4.435255	5.29973	0.035042	0.00740503	0.12704	0.0553519
chr2	215332081	215332181	1022860	0	+	0.46	(0.45,0.485]	chr2	111458	3	SS3_PROX	SS3_PROX:INTRON	ATIC	ENSG00000138363.15	ENST00000236959.14:ENST00000443953.5:ENST00000435675.5:ENST00000427397.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	73	2	3.22036	4.43479	5.64922	0.020599	0.016408	0.0982852	0.0911382
chr4	78873791	78873890	2072419	0	+	0.383838	(0.36,0.39]	chr4	211741	6	INTRON	INTRON	BMP2K	ENSG00000138756.19	ENST00000389010.7:ENST00000502613.3:ENST00000502871.5:ENST00000507670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	91	2	2.84128	4.434125	6.02697	0.0684007	0.00133548	0.164885	0.0173572
chr21	45444432	45444532	7630707	0	+	0.55	(0.523,0.58]	chr21	797656	386	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	3.51663	4.433935	5.35124	0.0295772	0.00782908	0.116079	0.0574276
chr9	126470343	126470443	4242068	0	+	0.53	(0.523,0.58]	chr9	402698	221	INTRON	INTRON	MVB12B	ENSG00000196814.15	ENST00000361171.8	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	3.51663	4.433935	5.35124	0.0295772	0.00782908	0.116079	0.0574276
chr13	112970555	112970654	5655326	0	+	0.616162	(0.58,1]	chr13	555120	7	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	1	99	2	4.04904	4.43383	4.81862	0.0102696	0.0056478	0.0678072	0.0495171
chr1	245808241	245808341	698854	0	-	0.48	(0.45,0.485]	chr1	82352	194	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000490322.1:ENST00000493441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.22352	4.43349	4.64346	0.0850039	0.0496712	0.181766	0.160725
chr10	94575698	94575791	4559494	0	+	0.483871	(0.45,0.485]	chr10	434969	6	INTRON	INTRON	HELLS	ENSG00000119969.15	ENST00000239026.10:ENST00000371332.8:ENST00000348459.10:ENST00000394036.5:ENST00000394045.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.22352	4.43349	4.64346	0.0850039	0.0496712	0.181766	0.160725
chr13	33263659	33263759	5685234	0	-	0.47	(0.45,0.485]	chr13	558196	578	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.22352	4.43349	4.64346	0.0850039	0.0496712	0.181766	0.160725
chr13	113055403	113055503	5656191	0	+	0.48	(0.45,0.485]	chr13	555189	6	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.22352	4.43349	4.64346	0.0850039	0.0496712	0.181766	0.160725
chr15	57100175	57100275	6112164	0	+	0.48	(0.45,0.485]	chr15	601613	79	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.22352	4.43349	4.64346	0.0850039	0.0496712	0.181766	0.160725
chr19	15271324	15271423	7341761	0	-	0.484848	(0.45,0.485]	chr19	760379	19	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000263377.6:ENST00000371835.8:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601071.1:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.22352	4.43349	4.64346	0.0850039	0.0496712	0.181766	0.160725
chr2	91630051	91630151	1217385	0	-	0.48	(0.45,0.485]	chr2	131098	7	INTRON	INTRON	LSP1P4	ENSG00000143429.11	ENST00000692025.1:ENST00000423774.3:ENST00000609777.6:ENST00000692653.1:ENST00000608501.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	33	2	4.22352	4.43349	4.64346	0.0850039	0.0496712	0.181766	0.160725
chr5	119368401	119368501	2517595	0	+	0.46	(0.45,0.485]	chr5	250009	119	INTRON	INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5:ENST00000513374.1:ENST00000503646.1:ENST00000504642.1:ENST00000504771.3:ENST00000415806.2	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.22352	4.43349	4.64346	0.0850039	0.0496712	0.181766	0.160725
chr7	47524236	47524336	3589055	0	-	0.48	(0.45,0.485]	chr7	346138	169	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.22352	4.43349	4.64346	0.0850039	0.0496712	0.181766	0.160725
chr4	39781009	39781108	2036264	0	+	0.323232	(0.29,0.33]	chr4	207916	27	UTR3	UTR3:EXON_MRNA	UBE2K	ENSG00000078140.14	ENST00000261427.10	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	3.59602	4.43328	5.27054	0.0308815	0.00672736	0.119556	0.0519464
chr17	82150859	82150959	6987882	0	-	0.64	(0.58,1]	chr17	714577	151	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000419322.6:ENST00000392346.6:ENST00000582040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	79	2	2.83384	4.433275	6.03271	0.0529065	4.18183e-4	0.14912	0.00770005
chr6	36679884	36679973	2906388	0	+	0.640449	(0.58,1]	chr6	285235	6	INTRON	INTRON	CDKN1A	ENSG00000124762.14	ENST00000615513.4:ENST00000448526.6:ENST00000459970.1:ENST00000405375.5:ENST00000244741.10:ENST00000373711.3:ENST00000478800.1:ENST00000462537.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	79	2	2.83384	4.433275	6.03271	0.0529065	4.18183e-4	0.14912	0.00770005
chr10	3778849	3778947	4621638	0	-	0.428571	(0.419,0.45]	chr10	441655	30	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	KLF6	ENSG00000067082.15	ENST00000497571.6:ENST00000461124.1:ENST00000542957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	76	2	3.46155	4.43316	5.40477	0.0385125	0.0110249	0.131324	0.0711736
chr16	50573011	50573111	6451657	0	+	0.5	(0.485,0.523]	chr16	639902	144	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	72	2	3.6472	4.432445	5.21769	0.0359739	0.00579534	0.127853	0.0472203
chr1	174427144	174427244	280672	0	+	0.37	(0.36,0.39]	chr1	32717	326	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	77	2	3.00362	4.432	5.86038	0.027769	0.0174081	0.12074	0.0901374
chr15	55883678	55883778	6272797	0	-	0.45	(0.419,0.45]	chr15	618316	93	INTRON	INTRON	NEDD4	ENSG00000069869.17	ENST00000435532.8:ENST00000338963.6:ENST00000508342.5:ENST00000503468.5:ENST00000508871.5:ENST00000648451.1:ENST00000506154.1:ENST00000502612.5:ENST00000514893.5:ENST00000507063.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	81	2	2.81936	4.431885	6.04441	0.0405181	0.0149622	0.145945	0.0835955
chr6	16760897	16760997	3104463	0	-	0.91	(0.58,1]	chr6	300922	2	SS5_PROX	SS5_PROX:INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000473388.6:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1:ENST00000467008.5:ENST00000498374.1:ENST00000492857.1:ENST00000479680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	166	2	4.30968	4.43186	4.55404	0.00327429	3.19972e-4	0.0366935	0.00635576
chr16	85452109	85452209	6517592	0	+	0.51	(0.485,0.523]	chr16	646391	928	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	94	2	3.56212	4.4318550000000005	5.30159	0.0199384	0.00529578	0.0967486	0.044517
chr2	119766879	119766979	883660	0	+	0.43	(0.419,0.45]	chr2	100098	61	INTRON	INTRON	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000460162.1:ENST00000420482.5:ENST00000460289.5:ENST00000488279.6:ENST00000485247.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	95	2	2.5763	4.43171	6.28712	0.100818	7.76382e-4	0.196131	0.0118807
chr14	19303521	19303620	5928397	0	-	0.50505	(0.485,0.523]	chr14	580401	50	EXON_LNCRNA	EXON_LNCRNA:INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	11	697	2	3.71142	4.4315999999999995	5.15178	3.9161e-4	2.14526e-4	0.0113511	0.00476256
chr20	26010565	26010662	7452329	0	+	0.515464	(0.485,0.523]	chr20	775551	9	EXON_LNCRNA	EXON_LNCRNA	ENSG00000287569	ENSG00000287569.1	ENST00000668826.1	lncRNA	lncRNA	lncRNA	lncRNA	1	87	2	2.74113	4.43152	6.12191	0.0719691	6.58016e-4	0.168159	0.0106077
chr22	19423618	19423718	7763492	0	-	0.55	(0.523,0.58]	chr22	813787	125	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	96	2	3.20552	4.431505	5.65749	0.0182707	0.00584144	0.0921579	0.0474117
chr10	132570644	132570744	4617167	0	+	0.38	(0.36,0.39]	chr10	441139	321	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.30212	4.43144	4.56076	0.103289	0.0494303	0.197541	0.160725
chr4	122262068	122262165	2117500	0	+	0.360825	(0.36,0.39]	chr4	215427	29	INTRON	INTRON	KIAA1109	ENSG00000138688.17	ENST00000679879.1:ENST00000264501.8:ENST00000684987.1:ENST00000693420.1:ENST00000693334.1:ENST00000690536.1:ENST00000388738.8:ENST00000686075.1:ENST00000446180.5:ENST00000419325.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.30212	4.43144	4.56076	0.103289	0.0494303	0.197541	0.160725
chr11	61273416	61273511	5041312	0	-	0.452632	(0.45,0.485]	chr11	488763	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10:ENST00000535710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	128	2	2.09504	4.43141	6.76778	0.0477581	0.0029996	0.1588	0.0348875
chr1	236844669	236844769	366312	0	+	0.47	(0.45,0.485]	chr1	41482	57	INTRON	INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1:ENST00000681937.1:ENST00000366576.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	74	2	3.08169	4.431325	5.78096	0.0220375	0.0166968	0.10754	0.0884836
chr16	85591328	85591428	6518986	0	+	0.56	(0.523,0.58]	chr16	646396	346	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	2.9513	4.431285	5.91127	0.0531089	0.00111349	0.149478	0.0152496
chr7	138506906	138507006	3502470	0	+	0.47	(0.45,0.485]	chr7	337502	21	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	99	2	3.2476	4.430955	5.61431	0.0217589	0.0056886	0.100615	0.046716
chr12	6339098	6339196	5362098	0	-	0.510204	(0.485,0.523]	chr12	525042	45	INTRON	INTRON	TNFRSF1A	ENSG00000067182.8	ENST00000534885.5:ENST00000162749.7:ENST00000543995.5:ENST00000540022.5:ENST00000539372.5:ENST00000366159.8:ENST00000543048.5:ENST00000440083.6:ENST00000536194.1:ENST00000535958.1:ENST00000538363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	71	2	3.46766	4.430675	5.39369	0.0275819	0.0089247	0.112782	0.0620271
chr16	89307836	89307935	6659890	0	-	0.515152	(0.485,0.523]	chr16	666665	21	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1:ENST00000647539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	71	2	3.34812	4.43051	5.5129	0.0229047	0.0117752	0.102982	0.0743709
chr18	76424360	76424460	7179363	0	-	0.58	(0.523,0.58]	chr18	730080	437	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	2	118	2	2.3839	4.43051	6.47712	0.0679164	2.30436e-4	0.164413	0.00498593
chr22	50419762	50419862	7754439	0	+	0.5	(0.485,0.523]	chr22	812529	3	SS5_PROX	SS5_PROX:INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9:ENST00000401672.7	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	3.34812	4.43051	5.5129	0.0229047	0.0117752	0.102982	0.0743709
chr16	50341578	50341677	6587928	0	-	0.40404	(0.39,0.419]	chr16	658565	11	INTRON	INTRON	BRD7	ENSG00000166164.16	ENST00000394688.8:ENST00000394689.2:ENST00000475877.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.30157	4.4305	4.55943	0.104562	0.0496288	0.19835	0.160725
chr22	29828395	29828493	7784841	0	-	0.418367	(0.39,0.419]	chr22	816450	4	INTRON	INTRON	ASCC2	ENSG00000100325.15	ENST00000542393.5:ENST00000307790.8:ENST00000458594.5:ENST00000397771.6:ENST00000449900.6:ENST00000431535.5:ENST00000495967.5:ENST00000412689.5:ENST00000465667.6:ENST00000495681.5:ENST00000462454.1:ENST00000453160.5:ENST00000460313.1:ENST00000454854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.30157	4.4305	4.55943	0.104562	0.0496288	0.19835	0.160725
chr3	78994912	78995012	1837455	0	-	0.4	(0.39,0.419]	chr3	188611	556	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.30157	4.4305	4.55943	0.104562	0.0496288	0.19835	0.160725
chr3	136923085	136923185	1575959	0	+	0.41	(0.39,0.419]	chr3	167083	334	INTRON	INTRON	NCK1	ENSG00000158092.7	ENST00000481752.6:ENST00000288986.6:ENST00000491539.5:ENST00000485096.5:ENST00000476286.1:ENST00000478862.1:ENST00000460960.1:ENST00000488930.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.30157	4.4305	4.55943	0.104562	0.0496288	0.19835	0.160725
chr18	54917812	54917912	7168202	0	-	0.48	(0.45,0.485]	chr18	728600	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CCDC68	ENSG00000166510.14	ENST00000591504.6:ENST00000432185.5:ENST00000592040.5:ENST00000337363.8	protein_coding	protein_coding	protein_coding	protein_coding	1	109	2	3.91022	4.43039	4.95056	0.0127826	0.0117376	0.0773423	0.0737098
chr22	50730220	50730320	7755495	0	+	0.6	(0.58,1]	chr22	812813	1	SS3_PROX	SS3_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2:ENST00000659388.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	88	2	2.93515	4.4302150000000005	5.92528	0.00938921	0.0062948	0.064735	0.0523832
chr14	23516412	23516512	5757118	0	+	0.41	(0.39,0.419]	chr14	564963	16	INTRON	INTRON	ZFHX2-AS1	ENSG00000157306.14	ENST00000556354.5:ENST00000553985.1:ENST00000554403.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	91	2	2.8336	4.43	6.0264	0.0695649	0.00134695	0.167028	0.0174765
chr11	70539630	70539730	5059669	0	-	0.61	(0.58,1]	chr11	492663	363	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	66	2	3.30273	4.4297699999999995	5.55681	0.0126042	0.0107069	0.0761905	0.0700635
chr13	112694340	112694440	5652583	0	+	0.64	(0.58,1]	chr13	554894	35	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	3.30273	4.4297699999999995	5.55681	0.0126042	0.0107069	0.0761905	0.0700635
chr3	13204325	13204425	1691185	0	-	0.59	(0.58,1]	chr3	176566	398	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	3.30273	4.4297699999999995	5.55681	0.0126042	0.0107069	0.0761905	0.0700635
chr17	29082738	29082838	6875927	0	-	0.47	(0.45,0.485]	chr17	697788	3	SS3_PROX	SS3_PROX:INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000529578.5:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000546105.5:ENST00000527312.5:ENST00000531438.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	77	2	2.87326	4.429635	5.98601	0.033576	0.0119228	0.133139	0.0741726
chr11	70371326	70371424	4886741	0	+	0.367347	(0.36,0.39]	chr11	471245	1	EXON_MRNA	EXON_MRNA:INTRON	PPFIA1	ENSG00000131626.19	ENST00000253925.12:ENST00000389547.7:ENST00000532504.5:ENST00000648755.1:ENST00000644155.1:ENST00000526262.5:ENST00000638133.1:ENST00000530548.5:ENST00000525922.2:ENST00000531657.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	96	2	3.40591	4.42947	5.45303	0.0298	0.00525731	0.11661	0.044445
chr3	153164142	153164242	1600394	0	+	0.33	(0.29,0.33]	chr3	169060	10	UTR3	UTR3:EXON_MRNA	RAP2B	ENSG00000181467.5	ENST00000323534.5	protein_coding	protein_coding	protein_coding	protein_coding	3	275	2	4.22307	4.42889	4.63471	0.0023903	4.2318e-4	0.0308863	0.0077699
chr11	7577491	7577590	4792575	0	+	0.585859	(0.58,1]	chr11	459336	6	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PPFIBP2	ENSG00000166387.14	ENST00000684123.1:ENST00000299492.9:ENST00000527790.5:ENST00000524548.5:ENST00000529575.5:ENST00000533792.5:ENST00000532926.5:ENST00000684215.1:ENST00000650027.1:ENST00000525597.5:ENST00000529021.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	80	2	3.35086	4.4279150000000005	5.50497	0.0218816	0.00187297	0.101015	0.0219434
chr11	70534930	70535030	5059622	0	-	0.59	(0.58,1]	chr11	492663	316	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	80	2	3.35086	4.4279150000000005	5.50497	0.0218816	0.00187297	0.101015	0.0219434
chr16	57376086	57376184	6466025	0	+	0.387755	(0.36,0.39]	chr16	641365	31	INTRON	INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.09186	4.42788	4.7639	0.0811309	0.0687088	0.193274	0.177951
chr18	58382046	58382146	7074882	0	+	0.37	(0.36,0.39]	chr18	721313	84	INTRON	INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000676223.1:ENST00000675147.1:ENST00000675801.1:ENST00000456986.5:ENST00000675502.1:ENST00000357895.9:ENST00000435432.6:ENST00000586263.5:ENST00000456173.6:ENST00000676226.1:ENST00000675865.1:ENST00000675221.1:ENST00000431212.6:ENST00000674636.1:ENST00000674856.1:ENST00000675434.1:ENST00000635997.1:ENST00000674517.1:ENST00000587881.1:ENST00000679791.1:ENST00000674921.1:ENST00000675101.1:ENST00000675699.1:ENST00000592097.6:ENST00000590248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.09186	4.42788	4.7639	0.0811309	0.0687088	0.193274	0.177951
chr2	20668419	20668515	724975	0	+	0.375	(0.36,0.39]	chr2	84770	4	INTRON	INTRON	GDF7	ENSG00000143869.7	ENST00000272224.5	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.09186	4.42788	4.7639	0.0811309	0.0687088	0.193274	0.177951
chr3	50330480	50330580	1775228	0	-	0.63	(0.58,1]	chr3	184321	8	UTR3	UTR3:EXON_MRNA	RASSF1	ENSG00000068028.18	ENST00000327761.7:ENST00000616212.4:ENST00000482447.1:ENST00000357043.6:ENST00000395117.6:ENST00000359365.9:ENST00000395126.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	169	2	4.40362	4.4275649999999995	4.45151	0.00241527	5.10596e-4	0.0309229	0.00886422
chr17	72552635	72552735	6963837	0	-	0.46	(0.45,0.485]	chr17	710389	182	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	4	144	2	3.07401	4.427485	5.78096	0.0166968	0.00358047	0.0884836	0.0342681
chr17	66508969	66509069	6785495	0	+	0.48	(0.45,0.485]	chr17	684238	123	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	102	2	3.42892	4.427395	5.42587	0.0290571	0.00358671	0.116079	0.0342681
chr2	102120371	102120471	863589	0	+	0.45	(0.419,0.45]	chr2	97787	151	INTRON	INTRON	IL1R1	ENSG00000115594.12	ENST00000452403.5:ENST00000409929.5:ENST00000424272.5:ENST00000409589.5:ENST00000409329.5	protein_coding	protein_coding	protein_coding	protein_coding	1	83	2	3.97869	4.427335	4.87598	0.0768574	0.00330911	0.174882	0.0324356
chr1	11023624	11023723	27798	0	+	0.323232	(0.29,0.33]	chr1	3255	4	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000639599.1:ENST00000240185.8:ENST00000614757.4:ENST00000473869.5:ENST00000315091.7:ENST00000611963.4:ENST00000619555.4:ENST00000620632.4:ENST00000610369.4:ENST00000614494.1:ENST00000611136.4:ENST00000477447.6:ENST00000612542.1:ENST00000620505.1:ENST00000621573.1:ENST00000611008.4:ENST00000613177.1:ENST00000622108.1:ENST00000496840.1:ENST00000617757.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	255	2	3.51517	4.42732	5.33947	0.00953838	5.10786e-5	0.0658012	0.00167326
chr10	79253321	79253421	4533895	0	+	0.5	(0.485,0.523]	chr10	432461	92	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10:ENST00000472035.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	75	2	2.91537	4.4272149999999995	5.93906	0.0298565	0.0113657	0.126732	0.0723462
chr5	134000197	134000297	2764121	0	-	0.56	(0.523,0.58]	chr5	270978	68	INTRON	INTRON	VDAC1	ENSG00000213585.11	ENST00000265333.8:ENST00000395044.7:ENST00000395047.6:ENST00000425992.2:ENST00000466080.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	87	2	2.70025	4.42696	6.15367	0.0763549	5.76607e-4	0.174544	0.00963379
chr10	73758824	73758923	4509798	0	+	0.414141	(0.39,0.419]	chr10	431440	69	INTRON	INTRON	SEC24C	ENSG00000176986.16	ENST00000345254.9:ENST00000465076.5:ENST00000339365.2:ENST00000635550.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	34	2	4.09132	4.426945	4.76257	0.0822354	0.0689553	0.193274	0.179396
chr16	73129381	73129480	6628712	0	-	0.40404	(0.39,0.419]	chr16	663581	14	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2:ENST00000358463.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.09132	4.426945	4.76257	0.0822354	0.0689553	0.193274	0.179396
chr19	32982547	32982647	7363823	0	-	0.4	(0.39,0.419]	chr19	763279	19	INTRON	INTRON	RHPN2	ENSG00000131941.8	ENST00000254260.8:ENST00000544458.6:ENST00000588388.5:ENST00000588683.1:ENST00000592247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	34	2	4.09132	4.426945	4.76257	0.0822354	0.0689553	0.193274	0.179396
chr8	108457518	108457616	3902462	0	+	0.418367	(0.39,0.419]	chr8	372963	12	INTRON	INTRON	EMC2	ENSG00000104412.8	ENST00000220853.8:ENST00000517784.5:ENST00000519642.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.09132	4.426945	4.76257	0.0822354	0.0689553	0.193274	0.179396
chr19	47672655	47672754	7278343	0	+	0.525253	(0.523,0.58]	chr19	747629	647	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	1	88	2	3.27435	4.426575	5.5788	0.0321785	0.00262418	0.121593	0.0278348
chr11	61703350	61703449	4862033	0	+	0.59596	(0.58,1]	chr11	465896	225	INTRON	INTRON	DAGLA	ENSG00000134780.10	ENST00000257215.10:ENST00000540717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	67	2	3.79235	4.426525	5.0607	0.029633	0.00302484	0.116079	0.0305643
chr19	15321837	15321937	7342269	0	-	0.47	(0.45,0.485]	chr19	760397	415	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	118	2	2.92245	4.426395	5.93034	0.0130794	0.00745901	0.0782396	0.0554346
chr7	47476306	47476406	3588571	0	-	0.53	(0.523,0.58]	chr7	346123	232	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	3.19317	4.42638	5.65959	0.0366207	0.0021416	0.128697	0.0240825
chr19	46977691	46977791	7275350	0	+	0.54	(0.523,0.58]	chr19	747275	399	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	71	2	3.58927	4.426295	5.26332	0.0337698	0.00656975	0.124319	0.0510026
chr13	21445662	21445762	5666794	0	-	0.35	(0.33,0.36]	chr13	556587	196	INTRON	INTRON	ZDHHC20	ENSG00000180776.16	ENST00000400590.8:ENST00000542645.5:ENST00000382466.7:ENST00000320220.13:ENST00000415724.2	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.211	4.426155	4.64131	0.0867669	0.0541541	0.182221	0.167824
chr15	60458693	60458793	6284177	0	-	0.36	(0.33,0.36]	chr15	619416	15	INTRON	INTRON	ICE2	ENSG00000128915.12	ENST00000261520.9:ENST00000558181.5:ENST00000561114.5:ENST00000558512.5:ENST00000560895.5:ENST00000561446.5:ENST00000560668.5:ENST00000561087.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.211	4.426155	4.64131	0.0867669	0.0541541	0.182221	0.167824
chr19	38070555	38070655	7255903	0	+	0.34	(0.33,0.36]	chr19	743669	410	INTRON	INTRON	SIPA1L3	ENSG00000105738.11	ENST00000222345.11:ENST00000476317.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.211	4.426155	4.64131	0.0867669	0.0541541	0.182221	0.167824
chr20	10347614	10347714	7524466	0	-	0.48	(0.45,0.485]	chr20	785393	1156	INTRON	INTRON	SNAP25-AS1	ENSG00000227906.9	ENST00000421143.6:ENST00000692436.1:ENST00000453544.5	lncRNA	lncRNA	lncRNA	lncRNA	1	72	2	3.38668	4.426130000000001	5.46558	0.0273644	0.0113463	0.112372	0.0719708
chr1	48226772	48226871	120967	0	+	0.59596	(0.58,1]	chr1	15165	16	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	410	2	4.10987	4.42606	4.74225	4.54245e-4	8.76963e-5	0.0122651	0.00248201
chr13	100524411	100524511	5647362	0	+	0.37	(0.36,0.39]	chr13	554135	85	INTRON	INTRON	PCCA	ENSG00000175198.17	ENST00000376286.8:ENST00000376279.7:ENST00000376285.6:ENST00000647303.1:ENST00000637657.1:ENST00000636366.1:ENST00000636475.1:ENST00000458283.5:ENST00000428969.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	78	2	3.80233	4.42591	5.04949	0.0563927	0.00480386	0.154188	0.0416515
chr3	24431171	24431271	1715838	0	-	0.38	(0.36,0.39]	chr3	178010	6	INTRON	INTRON	THRB	ENSG00000151090.20	ENST00000646209.2:ENST00000396671.7:ENST00000356447.9:ENST00000646432.1:ENST00000643772.1:ENST00000645139.1:ENST00000642307.1:ENST00000644321.1:ENST00000646966.1:ENST00000416420.5:ENST00000413780.5:ENST00000447875.5:ENST00000453729.6:ENST00000431815.5:ENST00000447414.5:ENST00000428492.5:ENST00000418247.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	78	2	3.80233	4.42591	5.04949	0.0563927	0.00480386	0.154188	0.0416515
chr3	51668172	51668271	1472222	0	+	0.565657	(0.523,0.58]	chr3	157989	49	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	2.81323	4.425395	6.03756	0.0650388	7.92905e-4	0.162385	0.0120621
chr13	75404087	75404187	5727225	0	-	0.35	(0.33,0.36]	chr13	561722	269	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	2	121	2	2.5439	4.42535	6.3068	0.0561095	5.61859e-4	0.154188	0.00948267
chr2	100904132	100904232	859253	0	+	0.52	(0.485,0.523]	chr2	97321	571	INTRON	INTRON	NPAS2	ENSG00000170485.17	ENST00000335681.10:ENST00000427413.5	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	3.68058	4.42535	5.17012	0.038581	0.0053378	0.131324	0.0447225
chr1	11812461	11812561	28588	0	+	0.57	(0.523,0.58]	chr1	3422	49	INTRON	INTRON	CLCN6	ENSG00000011021.23	ENST00000312413.10:ENST00000346436.11:ENST00000376497.7:ENST00000400892.3:ENST00000376496.4:ENST00000376492.3:ENST00000376490.7:ENST00000376491.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.13061	4.424915	4.71922	0.0721601	0.0533354	0.168159	0.167062
chr1	17664795	17664895	54859	0	+	0.57	(0.523,0.58]	chr1	5602	2	SS5_PROX	SS5_PROX:INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.13061	4.424915	4.71922	0.0721601	0.0533354	0.168159	0.167062
chr1	17680179	17680279	55013	0	+	0.58	(0.523,0.58]	chr1	5603	152	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.13061	4.424915	4.71922	0.0721601	0.0533354	0.168159	0.167062
chr1	42850958	42851058	105852	0	+	0.57	(0.523,0.58]	chr1	12824	1	CDS_START	CDS_START:CDS:EXON_MRNA	ZNF691	ENSG00000164011.18	ENST00000372502.5:ENST00000372508.7:ENST00000651192.1:ENST00000372507.5:ENST00000372506.5:ENST00000372504.5:ENST00000397034.3:ENST00000372503.2:ENST00000630961.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.13061	4.424915	4.71922	0.0721601	0.0533354	0.168159	0.167062
chr10	132553658	132553758	4616997	0	+	0.53	(0.523,0.58]	chr10	441139	151	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.13061	4.424915	4.71922	0.0721601	0.0533354	0.168159	0.167062
chr12	3134752	3134852	5159118	0	+	0.58	(0.523,0.58]	chr12	501339	98	INTRON	INTRON	TSPAN9	ENSG00000011105.14	ENST00000537971.5:ENST00000444315.6:ENST00000011898.10:ENST00000649909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.13061	4.424915	4.71922	0.0721601	0.0533354	0.168159	0.167062
chr16	85595324	85595424	6519026	0	+	0.53	(0.523,0.58]	chr16	646396	386	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.13061	4.424915	4.71922	0.0721601	0.0533354	0.168159	0.167062
chr19	18509823	18509923	7348294	0	-	0.54	(0.523,0.58]	chr19	761503	340	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.13061	4.424915	4.71922	0.0721601	0.0533354	0.168159	0.167062
chr20	38997560	38997660	7477989	0	+	0.56	(0.523,0.58]	chr20	778747	23	INTRON	INTRON	DHX35	ENSG00000101452.15	ENST00000373325.6:ENST00000252011.8:ENST00000373323.8:ENST00000652169.1:ENST00000484417.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.13061	4.424915	4.71922	0.0721601	0.0533354	0.168159	0.167062
chr3	66008079	66008177	1815562	0	-	0.55102	(0.523,0.58]	chr3	187316	43	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.13061	4.424915	4.71922	0.0721601	0.0533354	0.168159	0.167062
chr4	715140	715239	1993779	0	+	0.575758	(0.523,0.58]	chr4	203088	88	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.13061	4.424915	4.71922	0.0721601	0.0533354	0.168159	0.167062
chr9	134373706	134373806	4261161	0	+	0.58	(0.523,0.58]	chr9	406316	3	SS3_PROX	SS3_PROX:INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2:ENST00000356384.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.13061	4.424915	4.71922	0.0721601	0.0533354	0.168159	0.167062
chr4	2812877	2812977	2000234	0	+	0.61	(0.58,1]	chr4	203926	4	SS5_PROX	SS5_PROX:INTRON	SH3BP2	ENSG00000087266.17	ENST00000503219.5:ENST00000512131.5:ENST00000503393.8:ENST00000510074.5:ENST00000511237.5:ENST00000504294.5:ENST00000508385.5:ENST00000513020.5:ENST00000511663.5:ENST00000512014.5:ENST00000513095.5:ENST00000502260.5:ENST00000435136.8:ENST00000511185.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	66	2	3.68463	4.42458	5.16453	0.0249802	0.00404771	0.10758	0.0371291
chr11	61289604	61289703	5041487	0	-	0.30303	(0.29,0.33]	chr11	488814	28	INTRON	INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10:ENST00000535599.1:ENST00000538579.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.12201	4.42418	4.72635	0.0672935	0.0564091	0.171933	0.163263
chr3	105678771	105678871	1861051	0	-	0.32	(0.29,0.33]	chr3	189747	2	SS3_PROX	SS3_PROX:INTRON	CBLB	ENSG00000114423.23	ENST00000645759.1:ENST00000394030.8:ENST00000646499.1:ENST00000645425.1:ENST00000642241.1:ENST00000407712.1:ENST00000646825.1:ENST00000643322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.12201	4.42418	4.72635	0.0672935	0.0564091	0.171933	0.163263
chr2	200332867	200332967	986219	0	+	0.29	[0,0.29]	chr2	108291	30	INTRON	INTRON	SPATS2L	ENSG00000196141.14	ENST00000439084.5:ENST00000409718.5:ENST00000358677.9:ENST00000409988.7:ENST00000409385.5:ENST00000439395.5:ENST00000444012.5:ENST00000451764.6:ENST00000360760.9:ENST00000423749.5:ENST00000457757.5:ENST00000471601.5:ENST00000428692.5:ENST00000453663.5:ENST00000409140.8:ENST00000459656.5:ENST00000471533.5:ENST00000409397.6:ENST00000619961.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	70	2	3.74141	4.42417	5.10693	0.0292928	0.00417019	0.116079	0.0378966
chr13	94030893	94030993	5625823	0	+	0.36	(0.33,0.36]	chr13	553070	26	INTRON	INTRON	GPC6	ENSG00000183098.11	ENST00000377047.9	protein_coding	protein_coding	protein_coding	protein_coding	1	84	2	4.13891	4.4239250000000006	4.70894	0.0798152	0.0019382	0.176933	0.0225083
chr11	70745382	70745482	5061735	0	-	0.61	(0.58,1]	chr11	492701	275	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	84	2	3.59052	4.423915	5.25731	0.014012	0.00358178	0.0807513	0.0342681
chr5	150028879	150028977	2564137	0	+	0.326531	(0.29,0.33]	chr5	254732	14	INTRON	INTRON	HMGXB3	ENSG00000113716.13	ENST00000613459.4:ENST00000503427.5:ENST00000502717.6:ENST00000514469.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	250	2	4.21663	4.423915	4.6312	0.00256522	3.80812e-4	0.0320885	0.00721291
chr8	133243854	133243930	4083712	0	-	0.368421	(0.36,0.39]	chr8	388207	1	SS5_PROX	SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000519278.5:ENST00000521414.5:ENST00000521026.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000523642.1:ENST00000522665.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	156	2	4.30212	4.423730000000001	4.54534	0.0494303	0.00431192	0.160725	0.042555
chr20	62029506	62029606	7583443	0	-	0.6	(0.58,1]	chr20	792369	144	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000252996.9:ENST00000608887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	164	2	4.23317	4.42358	4.61399	0.00385004	2.64819e-4	0.0400681	0.00556151
chr10	101063905	101064005	4570345	0	+	0.53	(0.523,0.58]	chr10	436424	3	SS3_PROX	SS3_PROX:INTRON	KAZALD1	ENSG00000107821.15	ENST00000370200.6:ENST00000477979.5:ENST00000470106.1:ENST00000477267.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.34118	4.423555	4.50593	0.094303	0.0372357	0.188571	0.139793
chr10	119331203	119331303	4594559	0	+	0.57	(0.523,0.58]	chr10	439173	42	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.34118	4.423555	4.50593	0.094303	0.0372357	0.188571	0.139793
chr11	3702162	3702262	4974179	0	-	0.57	(0.523,0.58]	chr11	481601	3	SS5_PROX	SS5_PROX:INTRON	NUP98	ENSG00000110713.17	ENST00000359171.8:ENST00000324932.12:ENST00000650171.1:ENST00000355260.7:ENST00000429801.5:ENST00000529063.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.34118	4.423555	4.50593	0.094303	0.0372357	0.188571	0.139793
chr11	8776191	8776226	4987978	0	-	0.542857	(0.523,0.58]	chr11	482790	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	DENND2B	ENSG00000166444.19	ENST00000534127.5:ENST00000526757.5:ENST00000313726.11:ENST00000530438.5:ENST00000528527.5:ENST00000533425.5:ENST00000526057.5:ENST00000527510.5:ENST00000530580.5:ENST00000532651.5:ENST00000533225.5:ENST00000526126.5:ENST00000529940.5:ENST00000528523.5:ENST00000534783.1:ENST00000526241.5:ENST00000530959.5:ENST00000526155.5:ENST00000534248.5:ENST00000527347.5:ENST00000533016.1:ENST00000527516.5:ENST00000527473.5:ENST00000533471.5:ENST00000530938.5:ENST00000524757.5:ENST00000527392.5:ENST00000526828.5:ENST00000525169.5:ENST00000534665.5:ENST00000531578.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.34118	4.423555	4.50593	0.094303	0.0372357	0.188571	0.139793
chr12	65193365	65193465	5252718	0	+	0.53	(0.523,0.58]	chr12	512136	216	INTRON	INTRON	LEMD3	ENSG00000174106.3	ENST00000308330.3:ENST00000541171.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.34118	4.423555	4.50593	0.094303	0.0372357	0.188571	0.139793
chr16	27518199	27518299	6572416	0	-	0.58	(0.523,0.58]	chr16	656105	59	INTRON	INTRON	GTF3C1	ENSG00000077235.18	ENST00000356183.9:ENST00000561623.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.34118	4.423555	4.50593	0.094303	0.0372357	0.188571	0.139793
chr20	20490723	20490823	7534106	0	-	0.55	(0.523,0.58]	chr20	786272	174	INTRON	INTRON	RALGAPA2	ENSG00000188559.16	ENST00000202677.12:ENST00000430436.5:ENST00000427175.2	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.34118	4.423555	4.50593	0.094303	0.0372357	0.188571	0.139793
chr22	46778121	46778220	7745160	0	+	0.575758	(0.523,0.58]	chr22	812164	35	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000441936.5:ENST00000486163.5:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000496139.5:ENST00000472791.5:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.34118	4.423555	4.50593	0.094303	0.0372357	0.188571	0.139793
chr3	38487493	38487592	1446615	0	+	0.525253	(0.523,0.58]	chr3	154334	43	UTR3	UTR3:EXON_MRNA	ACVR2B	ENSG00000114739.14	ENST00000352511.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.34118	4.423555	4.50593	0.094303	0.0372357	0.188571	0.139793
chr3	39147419	39147517	1739963	0	-	0.561224	(0.523,0.58]	chr3	180188	3	INTRON	INTRON	CSRNP1	ENSG00000144655.15	ENST00000273153.10:ENST00000514182.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.34118	4.423555	4.50593	0.094303	0.0372357	0.188571	0.139793
chr6	144689630	144689730	3023966	0	+	0.55	(0.523,0.58]	chr6	295451	107	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000367526.8	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.34118	4.423555	4.50593	0.094303	0.0372357	0.188571	0.139793
chr8	8852397	8852497	3935325	0	-	0.54	(0.523,0.58]	chr8	376197	304	INTRON	INTRON	MFHAS1	ENSG00000147324.11	ENST00000276282.7:ENST00000521881.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.34118	4.423555	4.50593	0.094303	0.0372357	0.188571	0.139793
chr8	122835000	122835100	3910194	0	+	0.53	(0.523,0.58]	chr8	373483	186	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.34118	4.423555	4.50593	0.094303	0.0372357	0.188571	0.139793
chr9	133843517	133843617	4428833	0	-	0.53	(0.523,0.58]	chr9	423304	88	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.34118	4.423555	4.50593	0.094303	0.0372357	0.188571	0.139793
chrX	48918383	48918435	8040675	0	-	0.576923	(0.523,0.58]	chrX	838765	2	SS5_PROX	SS5_PROX:INTRON	PIM2	ENSG00000102096.9	ENST00000376509.4	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.34118	4.423555	4.50593	0.094303	0.0372357	0.188571	0.139793
chr21	44863314	44863413	7678471	0	-	0.59596	(0.58,1]	chr21	802764	15	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000474737.5:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	95	2	3.95688	4.423475	4.89007	0.00872525	0.00681628	0.0612699	0.0548279
chr10	132239331	132239431	4782001	0	-	0.49	(0.485,0.523]	chr10	457361	108	INTRON	INTRON	STK32C	ENSG00000165752.17	ENST00000298630.8:ENST00000368622.5:ENST00000462160.5:ENST00000368620.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.12717	4.423405	4.71964	0.0718646	0.0545434	0.168159	0.167824
chr19	17196914	17197008	7219442	0	+	0.510638	(0.485,0.523]	chr19	737846	11	INTRON	INTRON	MYO9B	ENSG00000099331.14	ENST00000682292.1:ENST00000595618.5:ENST00000594824.5:ENST00000397274.6:ENST00000595641.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.12717	4.423405	4.71964	0.0718646	0.0545434	0.168159	0.167824
chr5	61228013	61228113	2428493	0	+	0.51	(0.485,0.523]	chr5	241961	472	INTRON	INTRON	SMIM15-AS1	ENSG00000251279.2	ENST00000506902.1	lncRNA	lncRNA	lncRNA	lncRNA	0	33	2	4.12717	4.423405	4.71964	0.0718646	0.0545434	0.168159	0.167824
chr13	112970953	112971052	5655330	0	+	0.484848	(0.45,0.485]	chr13	555120	11	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.12941	4.423	5.71659	0.0199365	0.018513	0.100864	0.0928429
chr2	235512533	235512633	1062721	0	+	0.47	(0.45,0.485]	chr2	115651	173	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	73	2	3.12941	4.423	5.71659	0.0199365	0.018513	0.100864	0.0928429
chr11	11898093	11898193	4799260	0	+	0.33	(0.29,0.33]	chr11	460323	4	SS5_PROX	SS5_PROX:INTRON	USP47	ENSG00000170242.19	ENST00000339865.9:ENST00000527733.7:ENST00000399455.2	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.33251	4.42276	4.51301	0.0885563	0.0396433	0.183874	0.143388
chr21	17525056	17525155	7599989	0	+	0.323232	(0.29,0.33]	chr21	794111	115	INTRON	INTRON	CXADR	ENSG00000154639.19	ENST00000284878.12:ENST00000400166.5:ENST00000400169.1:ENST00000400165.5:ENST00000356275.10	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.33251	4.42276	4.51301	0.0885563	0.0396433	0.183874	0.143388
chr3	47424984	47425080	1760788	0	-	0.3125	(0.29,0.33]	chr3	181567	1	SS5_PROX	SS5_PROX:INTRON	SCAP	ENSG00000114650.21	ENST00000265565.10:ENST00000441517.6:ENST00000320017.10:ENST00000648151.1:ENST00000416208.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.33251	4.42276	4.51301	0.0885563	0.0396433	0.183874	0.143388
chr3	60578464	60578564	1799394	0	-	0.33	(0.29,0.33]	chr3	186814	411	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5:ENST00000490952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.33251	4.42276	4.51301	0.0885563	0.0396433	0.183874	0.143388
chr4	110159979	110160079	2309436	0	-	0.31	(0.29,0.33]	chr4	232121	540	INTRON	INTRON	ELOVL6	ENSG00000170522.10	ENST00000394607.7:ENST00000302274.8:ENST00000514184.5:ENST00000506625.5:ENST00000506461.1:ENST00000503885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.33251	4.42276	4.51301	0.0885563	0.0396433	0.183874	0.143388
chr7	103924679	103924779	3663045	0	-	0.36	(0.33,0.36]	chr7	353511	71	INTRON	INTRON	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1:ENST00000681401.1:ENST00000679689.1:ENST00000681182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	77	2	3.838	4.42221	5.00642	0.0542065	0.00414833	0.151733	0.0377122
chr13	93314601	93314701	5618658	0	+	0.38	(0.36,0.39]	chr13	553052	866	INTRON	INTRON	GPC6	ENSG00000183098.11	ENST00000377047.9	protein_coding	protein_coding	protein_coding	protein_coding	1	84	2	4.0804	4.42215	4.7639	0.0811309	0.0024203	0.177951	0.0261589
chr1	120838423	120838512	225980	0	+	0.505618	(0.485,0.523]	chr1	25036	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF26	ENSG00000273136.8	ENST00000620612.5:ENST00000652444.1:ENST00000619748.4:ENST00000611287.4:ENST00000611702.4:ENST00000617913.4:ENST00000609741.2	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.33772	4.4220299999999995	4.50634	0.0939553	0.03818	0.188571	0.140822
chr10	79161752	79161852	4532974	0	+	0.5	(0.485,0.523]	chr10	432433	3	SS3_PROX	SS3_PROX:INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.33772	4.4220299999999995	4.50634	0.0939553	0.03818	0.188571	0.140822
chr17	17683158	17683254	6688865	0	+	0.489583	(0.485,0.523]	chr17	671334	2	SS3_PROX	SS3_PROX:INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000489697.1:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.33772	4.4220299999999995	4.50634	0.0939553	0.03818	0.188571	0.140822
chr17	57448544	57448644	6761697	0	+	0.51	(0.485,0.523]	chr17	682137	34	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.33772	4.4220299999999995	4.50634	0.0939553	0.03818	0.188571	0.140822
chr2	95809964	95810062	1218474	0	-	0.489796	(0.485,0.523]	chr2	131255	23	INTRON	INTRON	LINC00342	ENSG00000232931.6	ENST00000660608.1:ENST00000660641.1:ENST00000668171.1:ENST00000664191.1:ENST00000655069.1:ENST00000657232.1:ENST00000663557.1:ENST00000660416.1:ENST00000662121.1:ENST00000448494.1:ENST00000659287.1:ENST00000412393.5	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.33772	4.4220299999999995	4.50634	0.0939553	0.03818	0.188571	0.140822
chr3	13202525	13202625	1691167	0	-	0.49	(0.485,0.523]	chr3	176566	380	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.33772	4.4220299999999995	4.50634	0.0939553	0.03818	0.188571	0.140822
chr7	157340756	157340856	3521747	0	+	0.52	(0.485,0.523]	chr7	340131	3	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5:ENST00000439402.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.33772	4.4220299999999995	4.50634	0.0939553	0.03818	0.188571	0.140822
chr8	127830370	127830470	3918146	0	+	0.52	(0.485,0.523]	chr8	374176	101	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.33772	4.4220299999999995	4.50634	0.0939553	0.03818	0.188571	0.140822
chr11	70657031	70657131	5060845	0	-	0.37	(0.36,0.39]	chr11	492672	22	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	77	2	2.95428	4.42195	5.88962	0.0305895	0.0166261	0.126768	0.0884836
chr1	1051892	1051915	1280	0	+	0.826087	(0.58,1]	chr1	279	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.29454	4.421905	4.54927	0.0643046	0.0305531	0.161669	0.126768
chr1	1296733	1296833	380794	0	-	0.73	(0.58,1]	chr1	42970	1	SS3_PROX	SS3_PROX:INTRON	ACAP3	ENSG00000131584.19	ENST00000492936.5:ENST00000354700.10:ENST00000467278.5:ENST00000353662.4:ENST00000379037.6:ENST00000476572.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	31	2	4.29454	4.421905	4.54927	0.0643046	0.0305531	0.161669	0.126768
chr1	2269933	2270033	4911	0	+	0.73	(0.58,1]	chr1	1052	215	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.29454	4.421905	4.54927	0.0643046	0.0305531	0.161669	0.126768
chr1	112704723	112704807	563012	0	-	0.630952	(0.58,1]	chr1	64612	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RHOC	ENSG00000155366.17	ENST00000369633.6:ENST00000369642.7:ENST00000339083.12:ENST00000285735.6:ENST00000468093.5:ENST00000369638.6:ENST00000369637.5:ENST00000369636.6:ENST00000484280.6:ENST00000369632.6:ENST00000425265.6:ENST00000534717.5:ENST00000436685.6:ENST00000528831.5:ENST00000484054.3:ENST00000414971.1:ENST00000478447.1:ENST00000527563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.29454	4.421905	4.54927	0.0643046	0.0305531	0.161669	0.126768
chr10	79158855	79158955	4532945	0	+	0.61	(0.58,1]	chr10	432432	187	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.29454	4.421905	4.54927	0.0643046	0.0305531	0.161669	0.126768
chr10	79167826	79167926	4533035	0	+	0.61	(0.58,1]	chr10	432438	53	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.29454	4.421905	4.54927	0.0643046	0.0305531	0.161669	0.126768
chr15	34555251	34555350	6218171	0	-	0.676768	(0.58,1]	chr15	612407	9	INTRON	INTRON	GOLGA8B	ENSG00000215252.12	ENST00000683415.1:ENST00000569100.5:ENST00000484716.5:ENST00000564575.5:ENST00000566091.5:ENST00000566258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	31	2	4.29454	4.421905	4.54927	0.0643046	0.0305531	0.161669	0.126768
chr17	36511855	36511955	6889665	0	-	0.59	(0.58,1]	chr17	699505	4	SS3_PROX	SS3_PROX:INTRON	MYO19	ENSG00000278259.5	ENST00000614623.5:ENST00000610992.4:ENST00000621550.4:ENST00000610930.4:ENST00000612097.1:ENST00000620413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.29454	4.421905	4.54927	0.0643046	0.0305531	0.161669	0.126768
chr17	77356296	77356396	6803922	0	+	0.62	(0.58,1]	chr17	686742	321	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.29454	4.421905	4.54927	0.0643046	0.0305531	0.161669	0.126768
chr18	80033750	80033850	7182847	0	-	0.83	(0.58,1]	chr18	730352	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TXNL4A	ENSG00000141759.15	ENST00000585474.5:ENST00000592957.1:ENST00000589926.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.29454	4.421905	4.54927	0.0643046	0.0305531	0.161669	0.126768
chr2	10368944	10369035	719090	0	+	0.593407	(0.58,1]	chr2	84035	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4:ENST00000613496.4:ENST00000620771.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.29454	4.421905	4.54927	0.0643046	0.0305531	0.161669	0.126768
chr20	62052204	62052304	7583670	0	-	0.59	(0.58,1]	chr20	792369	371	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000252996.9:ENST00000608887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.29454	4.421905	4.54927	0.0643046	0.0305531	0.161669	0.126768
chr21	45498073	45498161	7631285	0	+	0.659091	(0.58,1]	chr21	797811	4	SS5_PROX	SS5_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.29454	4.421905	4.54927	0.0643046	0.0305531	0.161669	0.126768
chr22	46776627	46776726	7745145	0	+	0.59596	(0.58,1]	chr22	812164	20	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000441936.5:ENST00000486163.5:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000496139.5:ENST00000472791.5:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.29454	4.421905	4.54927	0.0643046	0.0305531	0.161669	0.126768
chr3	134373415	134373515	1920533	0	-	0.6	(0.58,1]	chr3	195372	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	AMOTL2	ENSG00000114019.15	ENST00000249883.10:ENST00000514516.5:ENST00000422605.6:ENST00000513145.1:ENST00000512955.1:ENST00000511759.1:ENST00000510560.1:ENST00000504234.1:ENST00000506107.1:ENST00000515172.1:ENST00000502491.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.29454	4.421905	4.54927	0.0643046	0.0305531	0.161669	0.126768
chr7	223943	224043	3305894	0	+	0.77	(0.58,1]	chr7	320161	146	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.29454	4.421905	4.54927	0.0643046	0.0305531	0.161669	0.126768
chr7	1121557	1121657	3527444	0	-	0.63	(0.58,1]	chr7	340591	117	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.29454	4.421905	4.54927	0.0643046	0.0305531	0.161669	0.126768
chr9	124486295	124486394	4402585	0	-	0.666667	(0.58,1]	chr9	419805	29	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.29454	4.421905	4.54927	0.0643046	0.0305531	0.161669	0.126768
chr20	34567842	34567941	7547106	0	-	0.525253	(0.523,0.58]	chr20	787854	65	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	3.08569	4.421555	5.75742	0.020773	0.0155135	0.102713	0.0849828
chr1	94463583	94463681	187305	0	+	0.469388	(0.45,0.485]	chr1	20299	46	INTRON	INTRON	ABCD3	ENSG00000117528.14	ENST00000370214.9:ENST00000647998.2:ENST00000315713.5:ENST00000468860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	72	2	3.26377	4.421155000000001	5.57854	0.0230065	0.0149252	0.102982	0.0848525
chr2	149618232	149618332	920128	0	+	0.39	(0.36,0.39]	chr2	102788	238	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	3	127	2	3.13722	4.420895	5.70457	0.022152	0.00493932	0.101784	0.0424686
chr3	61783491	61783591	1488836	0	+	0.49	(0.485,0.523]	chr3	160092	122	INTRON	INTRON	PTPRG	ENSG00000144724.20	ENST00000474889.6:ENST00000295874.14	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	3.57804	4.420895	5.26375	0.0335928	0.00685872	0.124319	0.0526888
chr1	14942523	14942623	43832	0	+	0.45	(0.419,0.45]	chr1	4384	121	INTRON	INTRON	KAZN	ENSG00000189337.17	ENST00000636203.1:ENST00000376030.7:ENST00000491547.1:ENST00000503743.5:ENST00000361144.9:ENST00000400798.6:ENST00000376028.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	77	2	3.02039	4.4208750000000006	5.82136	0.0276403	0.0210659	0.120359	0.0996078
chr22	36010745	36010845	7805649	0	-	0.42	(0.419,0.45]	chr22	817798	492	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	3.02039	4.4208750000000006	5.82136	0.0276403	0.0210659	0.120359	0.0996078
chr5	75353002	75353102	2456080	0	+	0.38	(0.36,0.39]	chr5	245323	10	INTRON	INTRON	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	167	2	3.6277	4.42085	5.214	0.010206	0.00887999	0.0684871	0.0618231
chr14	95319210	95319310	6048841	0	-	0.61	(0.58,1]	chr14	593434	1	SS5_PROX	SS5_PROX:INTRON	CLMN	ENSG00000165959.12	ENST00000298912.9:ENST00000553733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	171	2	3.61485	4.420805	5.22676	0.0133763	3.52186e-5	0.0790342	0.00126754
chr5	14217745	14217845	2384096	0	+	0.57	(0.523,0.58]	chr5	238473	334	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000502816.1:ENST00000505971.5:ENST00000512070.6:ENST00000509967.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	71	2	3.62427	4.42077	5.21727	0.0361597	0.0060311	0.127853	0.0484641
chr3	188240462	188240562	1652663	0	+	0.38	(0.36,0.39]	chr3	173753	3	SS5_PROX	SS5_PROX:INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	2	203	2	3.95451	4.4207350000000005	4.88696	0.0121825	2.78875e-4	0.0751482	0.00577243
chr12	132937435	132937534	5541901	0	-	0.333333	(0.33,0.36]	chr12	547052	39	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	88	2	2.95996	4.420695	5.88143	0.0551496	0.00169367	0.153649	0.0204799
chr2	171016041	171016140	1312719	0	-	0.545455	(0.523,0.58]	chr2	140568	7	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	87	2	3.22074	4.42025	5.61976	0.0350559	0.00236826	0.12704	0.0259199
chr10	34676427	34676524	4670419	0	-	0.443299	(0.419,0.45]	chr10	445531	5	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	3.56166	4.42017	5.27868	0.0457732	0.00882182	0.142336	0.061625
chr10	130169790	130169890	4615868	0	+	0.53	(0.523,0.58]	chr10	441025	3	SS5_PROX	SS5_PROX:INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	71	2	3.18279	4.42014	5.65749	0.0182707	0.0168396	0.0921579	0.0919482
chr15	98732817	98732917	6194173	0	+	0.57	(0.523,0.58]	chr15	609659	244	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	71	2	3.18279	4.42014	5.65749	0.0182707	0.0168396	0.0921579	0.0919482
chr9	123405187	123405287	4396612	0	-	0.57	(0.523,0.58]	chr9	419589	13	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	71	2	3.18279	4.42014	5.65749	0.0182707	0.0168396	0.0921579	0.0919482
chr2	62814196	62814296	815042	0	+	0.36	(0.33,0.36]	chr2	92095	422	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000449820.5:ENST00000426940.5:ENST00000413434.5:ENST00000405482.5:ENST00000494958.1:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	73	2	3.26334	4.41984	5.57634	0.0237329	0.0156643	0.10525	0.0878971
chr7	92290490	92290590	3414585	0	+	0.34	(0.33,0.36]	chr7	329803	436	INTRON	INTRON	ANKIB1	ENSG00000001629.10	ENST00000265742.8	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.26334	4.41984	5.57634	0.0237329	0.0156643	0.10525	0.0878971
chr2	202654085	202654185	996336	0	+	0.33	(0.29,0.33]	chr2	109362	179	INTRON	INTRON	FAM117B	ENSG00000138439.12	ENST00000392238.3:ENST00000481658.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	71	2	3.24556	4.41981	5.59406	0.0184845	0.0151115	0.0928429	0.085778
chr20	20465033	20465133	7533848	0	-	0.3	(0.29,0.33]	chr20	786266	525	INTRON	INTRON	RALGAPA2	ENSG00000188559.16	ENST00000202677.12:ENST00000430436.5	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	3.31177	4.419745000000001	5.52772	0.0289861	0.00324812	0.116079	0.0319647
chr9	110248229	110248328	4367793	0	-	0.515152	(0.485,0.523]	chr9	417181	30	INTRON	INTRON	TXN	ENSG00000136810.13	ENST00000374517.6:ENST00000374515.9	protein_coding	protein_coding	protein_coding	protein_coding	2	95	2	3.11352	4.41941	5.7253	0.0162644	0.00747179	0.0873195	0.0555092
chr14	31162700	31162800	5952683	0	-	0.29	[0,0.29]	chr14	583296	50	INTRON	INTRON	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000691390.1:ENST00000553957.6:ENST00000687002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	68	2	3.44983	4.419315	5.3888	0.0183035	0.00861801	0.0922556	0.0612699
chr4	885979	886078	2178462	0	-	0.606061	(0.58,1]	chr4	220626	3	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	87	2	3.10233	4.419175	5.73602	0.00904546	0.00607723	0.0637469	0.0487928
chr12	120248750	120248840	5522145	0	-	0.433333	(0.419,0.45]	chr12	543976	1	INTRON	INTRON	PXN	ENSG00000089159.17	ENST00000267257.11:ENST00000228307.11:ENST00000424649.6:ENST00000637617.2:ENST00000458477.6:ENST00000323871.9:ENST00000547983.5:ENST00000440827.3:ENST00000547746.1:ENST00000547772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.08324	4.41907	4.7549	0.0888907	0.0727147	0.199502	0.183874
chr15	69182642	69182742	6142367	0	+	0.43	(0.419,0.45]	chr15	604176	215	INTRON	INTRON	GLCE	ENSG00000138604.10	ENST00000559798.2:ENST00000261858.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	34	2	4.08324	4.41907	4.7549	0.0888907	0.0727147	0.199502	0.183874
chr15	98850829	98850929	6195356	0	+	0.43	(0.419,0.45]	chr15	609677	262	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1:ENST00000557938.5:ENST00000560186.5:ENST00000560277.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	34	2	4.08324	4.41907	4.7549	0.0888907	0.0727147	0.199502	0.183874
chr2	112082715	112082814	877086	0	+	0.434343	(0.419,0.45]	chr2	99045	8	INTRON	INTRON	TMEM87B	ENSG00000153214.11	ENST00000283206.9:ENST00000650799.1	protein_coding	protein_coding	protein_coding	protein_coding	0	34	2	4.08324	4.41907	4.7549	0.0888907	0.0727147	0.199502	0.183874
chr7	39698010	39698108	3351606	0	+	0.438776	(0.419,0.45]	chr7	324083	1	INTRON	INTRON	RALA	ENSG00000006451.8	ENST00000468201.1:ENST00000005257.7:ENST00000434466.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	34	2	4.08324	4.41907	4.7549	0.0888907	0.0727147	0.199502	0.183874
chr11	70586129	70586229	5060134	0	-	0.51	(0.485,0.523]	chr11	492663	828	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	194	2	4.37429	4.41891	4.46353	0.00387487	8.506e-4	0.0401256	0.0126678
chr5	70945565	70945665	2445342	0	+	0.35	(0.33,0.36]	chr5	243974	1	SS3_PROX	SS3_PROX:INTRON	SMN1	ENSG00000172062.17	ENST00000503079.6:ENST00000514951.5:ENST00000506239.6:ENST00000380707.9:ENST00000506163.5:ENST00000351205.8:ENST00000625245.2:ENST00000518504.5:ENST00000507905.6:ENST00000513228.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	100	2	3.22544	4.418775	5.61211	0.022456	0.00640803	0.102751	0.0503723
chr17	43570798	43570898	6739273	0	+	0.47	(0.45,0.485]	chr17	678633	256	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	97	2	2.79781	4.41871	6.03961	0.0165615	0.0108974	0.0917029	0.0707085
chr1	1064303	1064401	1383	0	+	0.683673	(0.58,1]	chr1	320	2	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	ENSG00000217801	ENSG00000217801.11	ENST00000688131.1:ENST00000456409.6:ENST00000692821.1:ENST00000394517.7:ENST00000427998.6:ENST00000685011.1:ENST00000692266.1:ENST00000412397.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	65	2	3.48503	4.418585	5.35214	0.0181452	0.006811	0.0921579	0.0524379
chr2	27338433	27338520	1111826	0	-	0.574713	(0.523,0.58]	chr2	121462	3	SS3_PROX	SS3_PROX:INTRON	GTF3C2	ENSG00000115207.15	ENST00000359541.6:ENST00000264720.8	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	2.86937	4.418055	5.96674	0.0324455	0.0109075	0.130548	0.0707085
chr7	138001203	138001303	3720715	0	-	0.37	(0.36,0.39]	chr7	357312	2	SS5_PROX	SS5_PROX:INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5:ENST00000468127.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	74	2	3.26869	4.417615	5.56654	0.0272676	0.016118	0.112327	0.0897679
chr16	1728837	1728937	6371224	0	+	0.63	(0.58,1]	chr16	628838	3	SS3_PROX	SS3_PROX:INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000685565.1:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	65	2	3.52722	4.417345	5.30747	0.0196049	0.00611467	0.0955413	0.0489549
chr17	77216564	77216653	6803141	0	+	0.494382	(0.485,0.523]	chr17	686686	1	UTR3	UTR3:EXON_MRNA	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	3	256	2	3.4274	4.41734	5.40728	0.0119334	3.86674e-5	0.0741726	0.00135841
chr6	95603963	95604059	2954167	0	+	0.25	[0,0.29]	chr6	290812	6	EXON_MRNA	EXON_MRNA:INTRON	MANEA	ENSG00000172469.17	ENST00000682076.1:ENST00000683151.1:ENST00000358812.9:ENST00000682663.1:ENST00000684753.1:ENST00000474553.1:ENST00000684164.1:ENST00000682417.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.14609	4.41732	4.68855	0.0554735	0.0482299	0.159496	0.154188
chrX	65515173	65515273	8055025	0	-	0.44	(0.419,0.45]	chrX	840751	2	SS3_PROX	SS3_PROX:INTRON	LAS1L	ENSG00000001497.18	ENST00000677056.1:ENST00000677969.1:ENST00000374811.8:ENST00000374807.9:ENST00000677834.1:ENST00000484069.1:ENST00000374804.9:ENST00000677986.1:ENST00000677087.1:ENST00000679056.1:ENST00000679261.1:ENST00000678074.1:ENST00000678705.1:ENST00000679277.1:ENST00000677154.1:ENST00000678547.1:ENST00000678956.1:ENST00000679116.1:ENST00000678848.1:ENST00000678173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	78	2	3.74317	4.41725	5.09133	0.0586308	0.00581478	0.155565	0.047264
chr2	121479319	121479419	1262519	0	-	0.25	[0,0.29]	chr2	136083	90	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	71	2	2.97596	4.417085	5.85821	0.0250673	0.00783384	0.114418	0.0592199
chr10	112158893	112158979	4760353	0	-	0.534884	(0.523,0.58]	chr10	455157	1	INTRON	INTRON	GPAM	ENSG00000119927.14	ENST00000348367.9:ENST00000369425.5	protein_coding	protein_coding	protein_coding	protein_coding	3	122	2	3.28404	4.41708	5.55012	0.0217068	0.00265771	0.100615	0.028016
chr13	97336634	97336734	5631950	0	+	0.53	(0.523,0.58]	chr13	553188	18	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	70	2	3.44013	4.4167000000000005	5.39327	0.0277354	0.00938609	0.112851	0.064735
chr6	158544441	158544541	3063737	0	+	0.58	(0.523,0.58]	chr6	297682	72	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.44013	4.4167000000000005	5.39327	0.0277354	0.00938609	0.112851	0.064735
chr16	87919756	87919856	6657563	0	-	0.6	(0.58,1]	chr16	666059	145	INTRON	INTRON	CA5A	ENSG00000174990.8	ENST00000649158.1:ENST00000648177.1:ENST00000649794.3:ENST00000648022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	66	2	3.20215	4.416665	5.63118	0.0136092	0.0109983	0.0811697	0.0708586
chr12	122083865	122083965	5343427	0	+	0.37	(0.36,0.39]	chr12	521864	42	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.20082	4.41626	4.6317	0.0950937	0.0581116	0.189021	0.175217
chr3	23869380	23869480	1431427	0	+	0.39	(0.36,0.39]	chr3	152796	25	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1:ENST00000493707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	33	2	4.20082	4.41626	4.6317	0.0950937	0.0581116	0.189021	0.175217
chr2	239283675	239283775	1391545	0	-	0.6	(0.58,1]	chr2	148740	321	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	67	2	3.82654	4.416195	5.00585	0.0323732	0.00275362	0.121593	0.0285628
chr5	209648	209747	2607678	0	-	0.474747	(0.45,0.485]	chr5	259392	33	INTRON	INTRON	CCDC127	ENSG00000164366.4	ENST00000296824.4:ENST00000441693.2	protein_coding	protein_coding	protein_coding	protein_coding	2	193	2	4.20619	4.41616	4.62613	0.00692008	4.64649e-4	0.0553898	0.00826915
chr17	1362508	1362605	6829150	0	-	0.412371	(0.39,0.419]	chr17	690322	1	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1:ENST00000573196.5:ENST00000575977.1:ENST00000469398.5:ENST00000486241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	74	2	3.41977	4.416155	5.41254	0.0347088	0.0116434	0.12648	0.0736274
chr11	68397811	68397910	4882940	0	+	0.565657	(0.523,0.58]	chr11	470578	74	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	127	2	3.09615	4.41612	5.73609	0.0215502	0.0017613	0.100612	0.0211077
chr17	44065867	44065963	6910577	0	-	0.510417	(0.485,0.523]	chr17	703401	16	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	3	114	2	2.58723	4.41604	6.24485	0.0158916	0.00665813	0.0890476	0.0540577
chr7	56057299	56057395	3375349	0	+	0.333333	(0.33,0.36]	chr7	325689	5	INTRON	INTRON	CCT6A	ENSG00000146731.11	ENST00000335503.3:ENST00000275603.9:ENST00000482776.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	92	2	3.36841	4.415979999999999	5.46355	0.0295712	0.00462971	0.116079	0.0408278
chr2	61239172	61239271	1155315	0	-	0.383838	(0.36,0.39]	chr2	126540	24	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000463046.5:ENST00000472706.5:ENST00000453734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	100	2	3.063	4.415965	5.76893	0.0200694	0.00991943	0.0971995	0.0666221
chr20	32478309	32478408	7543651	0	-	0.454545	(0.45,0.485]	chr20	787372	32	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	76	2	2.87326	4.415850000000001	5.95844	0.033576	0.0124835	0.133139	0.0761905
chr12	123295607	123295707	5534058	0	-	0.49	(0.485,0.523]	chr12	545665	66	UTR3	UTR3:EXON_MRNA	SBNO1	ENSG00000139697.14	ENST00000602398.3:ENST00000267176.8:ENST00000420886.6	protein_coding	protein_coding	protein_coding	protein_coding	2	96	2	3.24422	4.415725	5.58723	0.0203514	0.00538308	0.0979211	0.0450636
chr14	91223578	91223678	5899593	0	+	0.43	(0.419,0.45]	chr14	576437	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	75	2	3.42658	4.415675	5.40477	0.0385125	0.0119035	0.131324	0.0749304
chr19	41905489	41905512	7264280	0	+	0.434783	(0.419,0.45]	chr19	745342	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARHGEF1	ENSG00000076928.18	ENST00000600274.5:ENST00000354532.8:ENST00000599846.5:ENST00000347545.8:ENST00000378152.8:ENST00000337665.8:ENST00000599589.5:ENST00000595897.5:ENST00000595723.5:ENST00000600517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	75	2	3.42658	4.415675	5.40477	0.0385125	0.0119035	0.131324	0.0749304
chr12	23950668	23950768	5388536	0	-	0.5	(0.485,0.523]	chr12	528205	4	SS5_PROX	SS5_PROX:INTRON	SOX5	ENSG00000134532.19	ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2:ENST00000536729.2:ENST00000446891.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	107	2	3.71003	4.415475	5.12092	0.0414411	0.00155822	0.136301	0.0193979
chr6	158629329	158629429	3064601	0	+	0.41	(0.39,0.419]	chr6	297765	2	SS3_PROX	SS3_PROX:INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	3.00168	4.41543	5.82918	0.0279244	0.0186329	0.121102	0.0932878
chr1	226943679	226943779	355629	0	+	0.4	(0.39,0.419]	chr1	40145	27	INTRON	INTRON	COQ8A	ENSG00000163050.18	ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000489044.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.20027	4.4153199999999995	4.63037	0.0963077	0.0583327	0.189169	0.175217
chr12	120993319	120993419	5341064	0	+	0.41	(0.39,0.419]	chr12	521553	4	SS3_PROX	SS3_PROX:INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000400024.6:ENST00000560968.5:ENST00000402929.5:ENST00000535955.5:ENST00000538626.2:ENST00000538646.5:ENST00000541924.5:ENST00000544574.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.20027	4.4153199999999995	4.63037	0.0963077	0.0583327	0.189169	0.175217
chr15	52655954	52656052	6266522	0	-	0.397959	(0.39,0.419]	chr15	617726	41	INTRON	INTRON	FAM214A	ENSG00000047346.13	ENST00000619572.5:ENST00000534964.6:ENST00000261844.11:ENST00000399202.8:ENST00000562135.5:ENST00000566768.5:ENST00000561490.5:ENST00000561543.5:ENST00000568863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.20027	4.4153199999999995	4.63037	0.0963077	0.0583327	0.189169	0.175217
chr17	43546814	43546913	6739033	0	+	0.414141	(0.39,0.419]	chr17	678633	16	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	33	2	4.20027	4.4153199999999995	4.63037	0.0963077	0.0583327	0.189169	0.175217
chr3	171701019	171701118	1957448	0	-	0.393939	(0.39,0.419]	chr3	199006	8	INTRON	INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9:ENST00000481505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.20027	4.4153199999999995	4.63037	0.0963077	0.0583327	0.189169	0.175217
chr5	14151167	14151267	2383428	0	+	0.33	(0.29,0.33]	chr5	238468	69	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000502816.1:ENST00000505971.5:ENST00000512070.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	71	2	3.20079	4.415315	5.62984	0.0174273	0.01667	0.0917029	0.0901531
chr3	12966093	12966192	1688790	0	-	0.575758	(0.523,0.58]	chr3	176520	51	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	70	2	3.47888	4.41506	5.35124	0.0295772	0.00856566	0.116079	0.0612
chr12	23863592	23863692	5387658	0	-	0.31	(0.29,0.33]	chr12	528181	170	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000537393.5:ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2:ENST00000538083.1:ENST00000536729.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	78	2	4.03903	4.4150100000000005	4.79099	0.061706	0.00219789	0.158854	0.0245235
chr16	29264216	29264316	6433479	0	+	0.69	(0.58,1]	chr16	636745	121	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	1	76	2	2.63525	4.414725000000001	6.1942	0.0459151	0.00368616	0.154743	0.0389784
chrX	9654612	9654709	7844355	0	+	0.556701	(0.523,0.58]	chrX	822453	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	85	2	2.918	4.4146350000000005	5.91127	0.0558053	0.00111349	0.154188	0.0152496
chr12	108645706	108645806	5492570	0	-	0.59	(0.58,1]	chr12	540315	7	UTR3	UTR3:EXON_MRNA	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6	protein_coding	protein_coding	protein_coding	protein_coding	6	409	2	3.75945	4.41455	5.06965	0.00194671	1.21258e-5	0.0276038	5.89258e-4
chr16	85375442	85375542	6516825	0	+	0.65	(0.58,1]	chr16	646391	161	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	2.71042	4.414535	6.11865	0.0396128	0.00429384	0.143388	0.042386
chr16	68264841	68264941	6476352	0	+	0.69	(0.58,1]	chr16	643180	1	SS5_PROX	SS5_PROX:INTRON	SLC7A6	ENSG00000103064.15	ENST00000618043.4:ENST00000648130.1:ENST00000219343.11:ENST00000379152.7:ENST00000566834.5:ENST00000566454.5:ENST00000568088.5:ENST00000564708.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	65	2	3.35051	4.41445	5.47839	0.0145198	0.00953058	0.0823104	0.0650078
chr1	201996409	201996509	317054	0	+	0.51	(0.485,0.523]	chr1	35675	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RNPEP	ENSG00000176393.11	ENST00000481780.5:ENST00000295640.9:ENST00000367286.7:ENST00000487116.5:ENST00000492587.5:ENST00000471105.5:ENST00000447312.5:ENST00000478617.5:ENST00000479726.5:ENST00000492849.5:ENST00000449524.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	85	2	2.92022	4.413955	5.90769	0.0555127	0.0011708	0.154188	0.0157899
chr16	89834923	89835022	6525488	0	+	0.626263	(0.58,1]	chr16	647498	58	INTRON	INTRON	SPIRE2	ENSG00000204991.11	ENST00000564878.5:ENST00000378247.8:ENST00000393062.6:ENST00000563972.1:ENST00000566337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	100	2	4.08431	4.4138850000000005	4.74346	0.0121457	0.00525202	0.0754623	0.0476984
chr16	8781149	8781249	6382228	0	+	0.57	(0.523,0.58]	chr16	631267	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ABAT	ENSG00000183044.12	ENST00000268251.13:ENST00000396600.6:ENST00000566590.5:ENST00000567812.5:ENST00000425191.6:ENST00000569156.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	114	2	2.9177	4.413835000000001	5.90997	0.012016	0.00699174	0.0743424	0.0535227
chr17	243628	243727	6820706	0	-	0.414141	(0.39,0.419]	chr17	689558	92	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000570893.5:ENST00000576001.5:ENST00000570954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	74	2	3.45562	4.41367	5.37172	0.0367885	0.0107538	0.129052	0.0702857
chr10	102647815	102647915	4576502	0	+	0.51	(0.485,0.523]	chr10	437280	16	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	130	2	2.4298	4.41352	6.39724	0.0170298	0.00505512	0.0923809	0.0465263
chr3	182976592	182976691	1964443	0	-	0.464646	(0.45,0.485]	chr3	199617	105	INTRON	INTRON	DCUN1D1	ENSG00000043093.15	ENST00000292782.9:ENST00000632685.1:ENST00000460412.6:ENST00000469954.5:ENST00000492563.1:ENST00000497606.5:ENST00000487822.5:ENST00000466812.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	72	2	3.57078	4.41294	5.2551	0.0373953	0.00740503	0.130656	0.0553519
chr19	16369253	16369353	7343622	0	-	0.43	(0.419,0.45]	chr19	760668	69	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	77	2	3.68516	4.4128300000000005	5.1405	0.0550015	0.00665473	0.153337	0.0515847
chr1	21643868	21643968	419907	0	-	0.48	(0.45,0.485]	chr1	49018	171	INTRON	INTRON	RAP1GAP	ENSG00000076864.21	ENST00000374765.9:ENST00000471600.6:ENST00000542643.6:ENST00000611549.4:ENST00000495204.5:ENST00000374757.7:ENST00000317967.11:ENST00000447293.5:ENST00000482984.5:ENST00000464457.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.11446	4.41278	4.7111	0.0781398	0.0592571	0.176157	0.175203
chr1	230156221	230156320	360309	0	+	0.454545	(0.45,0.485]	chr1	40627	643	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.11446	4.41278	4.7111	0.0781398	0.0592571	0.176157	0.175203
chr16	72094454	72094554	6491353	0	+	0.47	(0.45,0.485]	chr16	645120	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DHX38	ENSG00000140829.12	ENST00000566794.5:ENST00000268482.8:ENST00000579387.5:ENST00000566489.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.11446	4.41278	4.7111	0.0781398	0.0592571	0.176157	0.175203
chr21	45495741	45495840	7678861	0	-	0.454545	(0.45,0.485]	chr21	802845	23	UTR3	UTR3:EXON_MRNA	SLC19A1	ENSG00000173638.19	ENST00000417954.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.11446	4.41278	4.7111	0.0781398	0.0592571	0.176157	0.175203
chr22	41846946	41847046	7735783	0	+	0.48	(0.45,0.485]	chr22	810889	132	INTRON	INTRON	SREBF2	ENSG00000198911.12	ENST00000612482.4:ENST00000361204.9:ENST00000424354.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.11446	4.41278	4.7111	0.0781398	0.0592571	0.176157	0.175203
chr5	1055781	1055881	2608378	0	-	0.47	(0.45,0.485]	chr5	259538	19	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10:ENST00000634447.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.11446	4.41278	4.7111	0.0781398	0.0592571	0.176157	0.175203
chr9	105276979	105277078	4205919	0	+	0.474747	(0.45,0.485]	chr9	399474	317	INTRON	INTRON	SLC44A1	ENSG00000070214.16	ENST00000374724.1:ENST00000374723.5:ENST00000470972.5:ENST00000374720.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.11446	4.41278	4.7111	0.0781398	0.0592571	0.176157	0.175203
chr6	2263992	2264090	2824563	0	+	0.540816	(0.523,0.58]	chr6	277255	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	GMDS-DT	ENSG00000250903.10	ENST00000657072.1:ENST00000529893.6:ENST00000659523.1:ENST00000659643.1:ENST00000660978.1:ENST00000691004.1:ENST00000664738.1:ENST00000532124.6:ENST00000691547.1:ENST00000663428.1:ENST00000654526.1:ENST00000670895.1:ENST00000532564.8:ENST00000685772.1:ENST00000687264.1:ENST00000660533.1:ENST00000531092.6:ENST00000524770.6:ENST00000657589.1:ENST00000607519.2:ENST00000456943.6:ENST00000530833.6:ENST00000525811.5:ENST00000534441.5:ENST00000533653.5:ENST00000534468.1:ENST00000530346.6:ENST00000662000.1:ENST00000665610.1:ENST00000654970.1	lncRNA	lncRNA	lncRNA	lncRNA	1	91	2	3.47085	4.412685	5.35452	0.0233215	0.00453096	0.103725	0.0400651
chr16	89294488	89294587	6659750	0	-	0.616162	(0.58,1]	chr16	666648	23	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	225	2	3.30908	4.41244	5.5158	0.0104949	1.29942e-5	0.0690941	6.18748e-4
chr14	54757478	54757578	5821362	0	+	0.43	(0.419,0.45]	chr14	569119	22	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555192.1	protein_coding	protein_coding	protein_coding	protein_coding	1	92	2	3.03039	4.4123600000000005	5.79433	0.0550674	0.00262626	0.153454	0.0278348
chr16	81549080	81549180	6508784	0	+	0.48	(0.45,0.485]	chr16	645911	532	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	4	142	2	1.94922	4.41205	6.87488	0.0504136	0.00245783	0.162679	0.0312836
chr8	38767995	38768095	3802235	0	+	0.54	(0.523,0.58]	chr8	365828	102	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	72	2	3.03457	4.411905	5.78924	0.0231444	0.0147166	0.109883	0.0826843
chr4	158830590	158830686	2157176	0	+	0.375	(0.36,0.39]	chr4	218576	10	INTRON	INTRON	FNIP2	ENSG00000052795.13	ENST00000264433.11:ENST00000504704.6:ENST00000512986.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	119	2	4.02863	4.411605	4.79458	0.0207145	0.0107356	0.102713	0.0702888
chr9	134342029	134342129	4260843	0	+	0.67	(0.58,1]	chr9	406311	150	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	83	2	3.56577	4.4115400000000005	5.25731	0.0146864	0.00358178	0.0826843	0.0342681
chr11	75485566	75485653	5080165	0	-	0.505747	(0.485,0.523]	chr11	494355	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	GDPD5	ENSG00000158555.15	ENST00000336898.8:ENST00000529721.5:ENST00000533784.5:ENST00000532435.5:ENST00000529095.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	85	2	3.0179	4.411525	5.80515	0.0479403	0.00153111	0.144601	0.0191213
chr1	244685596	244685696	370968	0	+	0.46	(0.45,0.485]	chr1	41907	292	INTRON	INTRON	DESI2	ENSG00000121644.19	ENST00000263831.11:ENST00000302550.16:ENST00000418162.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.32491	4.411385	4.49786	0.101311	0.0418883	0.196131	0.149021
chr22	28835562	28835662	7705144	0	+	0.47	(0.45,0.485]	chr22	806300	130	INTRON	INTRON	ENSG00000226471	ENSG00000226471.7	ENST00000458080.1:ENST00000687270.1:ENST00000418292.1	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.32491	4.411385	4.49786	0.101311	0.0418883	0.196131	0.149021
chr3	57016021	57016120	1789025	0	-	0.484848	(0.45,0.485]	chr3	186479	83	INTRON	INTRON	ARHGEF3	ENSG00000163947.12	ENST00000338458.8:ENST00000468727.5:ENST00000477833.5:ENST00000477440.6:ENST00000468466.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.32491	4.411385	4.49786	0.101311	0.0418883	0.196131	0.149021
chr3	71341057	71341156	1828857	0	-	0.464646	(0.45,0.485]	chr3	188233	54	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000648783.1:ENST00000650156.1:ENST00000649133.1:ENST00000493010.2:ENST00000649145.1:ENST00000648192.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.32491	4.411385	4.49786	0.101311	0.0418883	0.196131	0.149021
chr7	5698570	5698670	3538346	0	-	0.47	(0.45,0.485]	chr7	341641	457	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000484458.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.32491	4.411385	4.49786	0.101311	0.0418883	0.196131	0.149021
chr2	101033443	101033543	1238907	0	-	0.52	(0.485,0.523]	chr2	133730	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TBC1D8	ENSG00000204634.13	ENST00000409318.2:ENST00000376840.8	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.34812	4.411185	5.47425	0.0243396	0.0117752	0.106588	0.0743709
chr6	36678862	36678939	2906377	0	+	0.662338	(0.58,1]	chr6	285232	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	CDKN1A	ENSG00000124762.14	ENST00000615513.4:ENST00000448526.6:ENST00000459970.1:ENST00000405375.5:ENST00000244741.10:ENST00000373711.3:ENST00000478800.1:ENST00000462537.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	65	2	3.60807	4.41092	5.21377	0.0230012	0.00495688	0.102982	0.0425347
chr10	92859713	92859812	4551297	0	+	0.494949	(0.485,0.523]	chr10	434413	107	INTRON	INTRON	EXOC6	ENSG00000138190.17	ENST00000671701.1:ENST00000672817.1:ENST00000371552.8:ENST00000443748.6:ENST00000371543.5:ENST00000260762.10	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	2.97038	4.41084	5.8513	0.0267011	0.0131886	0.118343	0.0785398
chr11	70584529	70584629	5060118	0	-	0.58	(0.523,0.58]	chr11	492663	812	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	77	2	2.74768	4.41084	6.074	0.0411359	0.00906277	0.147756	0.0637469
chr14	70024246	70024346	5872625	0	+	0.47	(0.45,0.485]	chr14	573363	4	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	2	96	2	3.04016	4.41056	5.78096	0.0166968	0.00944306	0.0884836	0.0650078
chr20	34073362	34073462	7460406	0	+	0.39	(0.36,0.39]	chr20	776608	4	SS3_PROX	SS3_PROX:INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000413297.5:ENST00000246194.8:ENST00000333552.9:ENST00000442805.1:ENST00000493399.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	223	2	3.38348	4.410525	5.43757	0.0308572	5.68878e-5	0.119556	0.00180504
chr17	72559819	72559919	6963909	0	-	0.45	(0.419,0.45]	chr17	710389	254	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	3	136	2	3.33787	4.410485	5.4831	0.0345118	0.0031515	0.126025	0.0313723
chr16	50623596	50623695	6452165	0	+	0.575758	(0.523,0.58]	chr16	639918	15	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	9	720	2	4.00551	4.410455000000001	4.8154	0.00176099	1.60568e-5	0.0260735	7.18732e-4
chr2	241722014	241722099	1078638	0	+	0.635294	(0.58,1]	chr2	117261	2	INTRON	INTRON	ING5	ENSG00000168395.16	ENST00000313552.11:ENST00000406941.5:ENST00000445620.5:ENST00000493578.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	65	2	3.30273	4.41043	5.51813	0.013519	0.0107069	0.0792526	0.0700635
chr9	129608883	129608981	4250919	0	+	0.663265	(0.58,1]	chr9	404740	1	UTR5	UTR5:EXON_MRNA	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.30273	4.41043	5.51813	0.013519	0.0107069	0.0792526	0.0700635
chr1	44244166	44244265	459614	0	-	0.555556	(0.523,0.58]	chr1	55307	17	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.23973	4.410155	4.58058	0.0860403	0.0444247	0.181766	0.153511
chr12	119845886	119845986	5520371	0	-	0.54	(0.523,0.58]	chr12	543508	113	INTRON	INTRON	CIT	ENSG00000122966.17	ENST00000392521.7:ENST00000261833.11:ENST00000612548.4:ENST00000536325.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.23973	4.410155	4.58058	0.0860403	0.0444247	0.181766	0.153511
chr13	113014362	113014462	5655767	0	+	0.57	(0.523,0.58]	chr13	555139	2	SS3_PROX	SS3_PROX:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000433807.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486210.1:ENST00000397024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.23973	4.410155	4.58058	0.0860403	0.0444247	0.181766	0.153511
chr16	16039285	16039385	6406902	0	+	0.53	(0.523,0.58]	chr16	633041	23	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.23973	4.410155	4.58058	0.0860403	0.0444247	0.181766	0.153511
chr16	85346764	85346864	6516537	0	+	0.54	(0.523,0.58]	chr16	646381	377	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.23973	4.410155	4.58058	0.0860403	0.0444247	0.181766	0.153511
chr17	14013481	14013581	6858775	0	-	0.54	(0.523,0.58]	chr17	694957	1144	INTRON	INTRON	COX10-DT	ENSG00000236088.11	ENST00000582752.7:ENST00000690301.1:ENST00000662986.1:ENST00000686809.1:ENST00000686296.1:ENST00000602539.2:ENST00000602743.1	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.23973	4.410155	4.58058	0.0860403	0.0444247	0.181766	0.153511
chr17	21311686	21311777	6702073	0	+	0.538462	(0.523,0.58]	chr17	672766	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MAP2K3	ENSG00000034152.19	ENST00000395491.6:ENST00000342679.9:ENST00000496046.5:ENST00000361818.9:ENST00000316920.10:ENST00000613338.4:ENST00000477540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.23973	4.410155	4.58058	0.0860403	0.0444247	0.181766	0.153511
chr2	98622693	98622792	1227735	0	-	0.525253	(0.523,0.58]	chr2	132924	13	UTR3	UTR3:EXON_MRNA:INTRON	MGAT4A	ENSG00000071073.13	ENST00000393487.6:ENST00000264968.7:ENST00000414521.6	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.23973	4.410155	4.58058	0.0860403	0.0444247	0.181766	0.153511
chr19	34392290	34392386	7243273	0	+	0.427083	(0.419,0.45]	chr19	741719	2	EXON_MRNA	EXON_MRNA:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000589985.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	138	2	3.06088	4.41012	5.75936	0.028492	0.00285253	0.115177	0.0294017
chr1	17590173	17590273	54081	0	+	0.52	(0.485,0.523]	chr1	5465	13	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5	protein_coding	protein_coding	protein_coding	protein_coding	2	98	2	2.55201	4.40982	6.26763	0.0272692	0.00639185	0.119337	0.0529032
chr10	19312357	19312457	4451954	0	+	0.33	(0.29,0.33]	chr10	426753	288	INTRON	INTRON	MALRD1	ENSG00000204740.11	ENST00000454679.7:ENST00000377266.7	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	3.15459	4.40967	5.66475	0.0184236	0.0164475	0.0964756	0.0877632
chr16	20907994	20908094	6418039	0	+	0.5	(0.485,0.523]	chr16	634694	49	INTRON	INTRON	LYRM1	ENSG00000102897.10	ENST00000568663.5:ENST00000412082.6:ENST00000439021.5:ENST00000567165.5:ENST00000569023.5:ENST00000568820.5:ENST00000562740.5:ENST00000219168.8:ENST00000567954.6:ENST00000396052.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	70	2	3.30597	4.409435	5.5129	0.0229047	0.012958	0.102982	0.0778899
chr16	81564676	81564776	6508940	0	+	0.5	(0.485,0.523]	chr16	645911	688	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.30597	4.409435	5.5129	0.0229047	0.012958	0.102982	0.0778899
chr1	151543309	151543408	245191	0	+	0.323232	(0.29,0.33]	chr1	28015	25	INTRON	INTRON	TUFT1	ENSG00000143367.17	ENST00000392712.7:ENST00000368848.6:ENST00000368849.8:ENST00000498606.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.2311	4.409395	4.58769	0.0806047	0.0471437	0.177452	0.156915
chr17	2677415	2677515	6667303	0	+	0.32	(0.29,0.33]	chr17	667985	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000397195.10:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000397193.7:ENST00000574468.1:ENST00000571495.2:ENST00000675574.1:ENST00000675385.1:ENST00000675084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.2311	4.409395	4.58769	0.0806047	0.0471437	0.177452	0.156915
chr7	138545081	138545181	3502859	0	+	0.32	(0.29,0.33]	chr7	337534	59	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.2311	4.409395	4.58769	0.0806047	0.0471437	0.177452	0.156915
chr7	74495208	74495308	3391779	0	+	0.67	(0.58,1]	chr7	327343	407	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	2.95313	4.40933	5.86553	0.0435972	6.8352e-4	0.139245	0.0108717
chr2	134450638	134450738	898754	0	+	0.61	(0.58,1]	chr2	101298	19	UTR3	UTR3:EXON_MRNA	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	8	389	2	3.7411	4.4092	5.0773	5.97447e-4	1.38292e-4	0.0143535	0.00347637
chr7	5384487	5384586	3535909	0	-	0.606061	(0.58,1]	chr7	341475	61	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000413081.1	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	3.75733	4.409015	5.0607	0.029633	0.0033279	0.116079	0.0325742
chr1	6835986	6836086	8957	0	+	0.51	(0.485,0.523]	chr1	1849	104	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12:ENST00000490738.5:ENST00000476163.5:ENST00000473578.5:ENST00000557126.5:ENST00000467404.6:ENST00000461311.1:ENST00000486138.1:ENST00000482934.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.23628	4.40864	4.581	0.085711	0.045492200000000003	0.181766	0.154539
chr17	77465702	77465802	6805035	0	+	0.52	(0.485,0.523]	chr17	686806	88	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.23628	4.40864	4.581	0.085711	0.045492200000000003	0.181766	0.154539
chr2	239351977	239352077	1392230	0	-	0.49	(0.485,0.523]	chr2	148752	275	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.23628	4.40864	4.581	0.085711	0.045492200000000003	0.181766	0.154539
chr9	61969544	61969638	4158021	0	+	0.521277	(0.485,0.523]	chr9	395241	6	INTRON	INTRON	FAM27C	ENSG00000231527.7	ENST00000653087.1:ENST00000660875.1:ENST00000670686.1:ENST00000443347.6:ENST00000668789.1:ENST00000657353.1:ENST00000669747.1:ENST00000662964.1:ENST00000650759.1:ENST00000656926.1:ENST00000655025.1:ENST00000655049.1:ENST00000659299.1:ENST00000651201.1:ENST00000651799.1	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.23628	4.40864	4.581	0.085711	0.045492200000000003	0.181766	0.154539
chr2	121479618	121479717	1262522	0	-	0.444444	(0.419,0.45]	chr2	136083	93	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	75	2	3.15468	4.4084	5.66212	0.0266819	0.0211324	0.111563	0.103778
chr8	141414052	141414148	3925977	0	+	0.541667	(0.523,0.58]	chr8	374792	1	INTRON	INTRON	PTP4A3	ENSG00000184489.13	ENST00000520105.5:ENST00000521578.6:ENST00000523147.5:ENST00000329397.6	protein_coding	protein_coding	protein_coding	protein_coding	2	94	2	2.82229	4.4083	5.99431	0.014802	0.0104033	0.0847481	0.0686837
chr1	94421639	94421739	186883	0	+	0.34	(0.33,0.36]	chr1	20287	23	INTRON	INTRON	ABCD3	ENSG00000117528.14	ENST00000370214.9:ENST00000647998.2:ENST00000315713.5:ENST00000468860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	88	2	2.72086	4.408225	6.09559	0.0773451	9.809e-4	0.175203	0.0140347
chr11	70687801	70687901	5061157	0	-	0.7	(0.58,1]	chr11	492688	178	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	66	2	3.1491	4.40804	5.66698	0.0154006	0.0102927	0.0869771	0.0684871
chr11	46120053	46120149	5030825	0	-	0.489583	(0.485,0.523]	chr11	486597	3	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000690620.1:ENST00000418153.6:ENST00000532883.5:ENST00000524497.5:ENST00000693122.1:ENST00000529734.5:ENST00000688222.1:ENST00000690039.1:ENST00000692265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	189	2	4.34306	4.40795	4.47284	0.00487623	6.43746e-4	0.045672	0.0104271
chr1	109621522	109621603	202619	0	+	0.54321	(0.523,0.58]	chr1	22194	1	SS5_PROX	SS5_PROX:INTRON	AMPD2	ENSG00000116337.20	ENST00000531734.6:ENST00000655992.1:ENST00000474459.6:ENST00000342115.8:ENST00000528667.7:ENST00000667949.2:ENST00000680519.1:ENST00000680192.1:ENST00000531203.6:ENST00000256578.8:ENST00000681246.1:ENST00000525415.2:ENST00000680170.1:ENST00000679880.1:ENST00000679593.1:ENST00000681108.1:ENST00000681132.1:ENST00000679892.1:ENST00000680929.1:ENST00000680531.1:ENST00000680132.1:ENST00000681181.1:ENST00000680820.1:ENST00000680148.1:ENST00000679981.1:ENST00000681496.1:ENST00000681862.1:ENST00000680832.1:ENST00000681834.1:ENST00000681218.1:ENST00000679379.1:ENST00000652975.2:ENST00000486282.7:ENST00000369840.7:ENST00000528270.6:ENST00000663749.1:ENST00000668421.1:ENST00000659122.2:ENST00000358729.9:ENST00000476688.3:ENST00000526301.6:ENST00000527846.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	70	2	3.229	4.4079	5.5868	0.020474	0.0152072	0.0979776	0.0861813
chr16	29268114	29268214	6433518	0	+	0.58	(0.523,0.58]	chr16	636745	160	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	1	70	2	3.229	4.4079	5.5868	0.020474	0.0152072	0.0979776	0.0861813
chr3	184872200	184872299	1645129	0	+	0.393939	(0.39,0.419]	chr3	173015	10	INTRON	INTRON	VPS8	ENSG00000156931.16	ENST00000287546.8:ENST00000625842.3:ENST00000436792.6:ENST00000446204.6:ENST00000458721.5:ENST00000421069.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	90	2	2.73134	4.407875	6.08441	0.0798958	0.00116356	0.177037	0.0157899
chr11	589910	590007	4784917	0	+	0.659794	(0.58,1]	chr11	457994	21	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	129	2	2.5771	4.40771	6.23832	0.0290799	2.24165e-4	0.116079	0.00490779
chr3	13198826	13198926	1691130	0	-	0.46	(0.45,0.485]	chr3	176566	343	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.70282	4.40756	5.1123	0.0458344	0.00539085	0.142336	0.0450882
chr6	154500170	154500270	3297445	0	-	0.29	[0,0.29]	chr6	319123	218	INTRON	INTRON	CNKSR3	ENSG00000153721.19	ENST00000607772.6	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.70802	4.407475	5.10693	0.0292928	0.0045429	0.116079	0.0401487
chr11	68417126	68417225	4883141	0	+	0.444444	(0.419,0.45]	chr11	470622	2	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	33	2	4.19215	4.407439999999999	4.62273	0.103601	0.0617113	0.197541	0.18013
chr14	37248806	37248906	5783580	0	+	0.43	(0.419,0.45]	chr14	566873	5	INTRON	INTRON	MIPOL1	ENSG00000151338.20	ENST00000694961.1:ENST00000396294.6:ENST00000537471.6:ENST00000556615.5:ENST00000554114.2:ENST00000695502.1:ENST00000695405.1:ENST00000695503.1:ENST00000684589.1:ENST00000327441.11:ENST00000694962.1:ENST00000539062.6:ENST00000554930.5:ENST00000556451.5:ENST00000694963.1:ENST00000555870.5:ENST00000694964.1:ENST00000556753.5:ENST00000694965.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	33	2	4.19215	4.407439999999999	4.62273	0.103601	0.0617113	0.197541	0.18013
chr2	43648488	43648588	777542	0	+	0.43	(0.419,0.45]	chr2	89226	33	INTRON	INTRON	PLEKHH2	ENSG00000152527.14	ENST00000282406.9:ENST00000405223.6:ENST00000405000.6:ENST00000491692.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	33	2	4.19215	4.407439999999999	4.62273	0.103601	0.0617113	0.197541	0.18013
chr4	185798070	185798169	2372186	0	-	0.444444	(0.419,0.45]	chr4	237058	223	INTRON	INTRON	SORBS2	ENSG00000154556.19	ENST00000284776.11:ENST00000695409.1:ENST00000319471.13:ENST00000449407.6:ENST00000355634.9:ENST00000451974.6:ENST00000393528.7:ENST00000487184.2:ENST00000695410.1:ENST00000695411.1:ENST00000470685.5:ENST00000439914.5:ENST00000439049.5:ENST00000451958.5:ENST00000444781.5:ENST00000419063.5:ENST00000393523.6:ENST00000420158.5:ENST00000421639.5:ENST00000493709.5:ENST00000431902.5:ENST00000415274.5:ENST00000432655.5:ENST00000428330.5:ENST00000464819.5:ENST00000478249.5:ENST00000429056.5:ENST00000463104.5:ENST00000456060.5:ENST00000476878.1:ENST00000462661.1:ENST00000469627.1:ENST00000488562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.19215	4.407439999999999	4.62273	0.103601	0.0617113	0.197541	0.18013
chr9	112832367	112832465	4222833	0	+	0.44898	(0.419,0.45]	chr9	400351	11	INTRON	INTRON	SNX30	ENSG00000148158.17	ENST00000374232.8	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.19215	4.407439999999999	4.62273	0.103601	0.0617113	0.197541	0.18013
chrX	40093204	40093303	8027982	0	-	0.434343	(0.419,0.45]	chrX	837638	149	INTRON	INTRON	BCOR	ENSG00000183337.18	ENST00000378455.8:ENST00000397354.7:ENST00000342274.8:ENST00000615339.2:ENST00000680831.1:ENST00000378444.9:ENST00000679513.1:ENST00000672922.2:ENST00000673391.1:ENST00000406200.4:ENST00000412952.1	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.19215	4.407439999999999	4.62273	0.103601	0.0617113	0.197541	0.18013
chr2	148655941	148656041	918476	0	+	0.53	(0.523,0.58]	chr2	102687	100	INTRON	INTRON	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000409654.5:ENST00000397424.2	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	2.77655	4.407055	6.03756	0.0685533	7.92905e-4	0.165066	0.0120621
chr16	69043318	69043418	6480833	0	+	0.42	(0.419,0.45]	chr16	643682	25	INTRON	INTRON	TANGO6	ENSG00000103047.8	ENST00000261778.2:ENST00000562000.5:ENST00000568361.5:ENST00000561931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	79	2	3.82602	4.406845	4.98767	0.0669167	0.00478241	0.16272	0.0415621
chr10	34683171	34683270	4670488	0	-	0.515152	(0.485,0.523]	chr10	445537	36	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	2.77877	4.406365	6.03396	0.0682166	8.35707e-4	0.164526	0.012554
chr7	47525336	47525436	3589066	0	-	0.46	(0.45,0.485]	chr7	346138	180	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	3.12941	4.406355	5.6833	0.0199365	0.0195193	0.100864	0.0955413
chr5	861252	861351	2607967	0	-	0.585859	(0.58,1]	chr5	259417	103	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	1	78	2	2.74846	4.4062	6.06394	0.0605281	3.80904e-4	0.158506	0.00721291
chr2	179229918	179230018	1328060	0	-	0.3	(0.29,0.33]	chr2	141710	377	INTRON	INTRON	SESTD1	ENSG00000187231.14	ENST00000428443.8:ENST00000440010.5:ENST00000435047.5:ENST00000452991.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	70	2	3.33112	4.406095	5.48107	0.0222022	0.0124843	0.101857	0.0765738
chr6	41722362	41722462	3132617	0	-	0.62	(0.58,1]	chr6	305481	166	INTRON	INTRON	TFEB	ENSG00000112561.19	ENST00000358871.6:ENST00000373033.6:ENST00000230323.8:ENST00000677531.1:ENST00000403298.9:ENST00000420312.6:ENST00000424495.2:ENST00000678831.1:ENST00000419396.6:ENST00000416140.6:ENST00000678871.1:ENST00000394283.5:ENST00000679237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	65	2	3.64686	4.405695	5.16453	0.0249802	0.00447535	0.10758	0.0398484
chr3	28284720	28284820	1432679	0	+	0.4	(0.39,0.419]	chr3	152954	210	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2:ENST00000396610.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	76	2	2.95235	4.405685	5.85902	0.0307567	0.0177874	0.12741	0.0914273
chr6	158247590	158247690	3060991	0	+	0.42	(0.419,0.45]	chr6	297572	149	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	76	2	3.02039	4.405635	5.79088	0.0276403	0.022052	0.120359	0.101502
chr22	21676312	21676412	7690787	0	+	0.34	(0.33,0.36]	chr22	804829	8	INTRON	INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000458567.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000679586.1:ENST00000680094.1:ENST00000484439.5:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000680022.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	33	2	4.102	4.40547	4.70894	0.0798152	0.0642879	0.184676	0.176933
chr3	78904224	78904324	1836546	0	-	0.35	(0.33,0.36]	chr3	188602	1570	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.102	4.40547	4.70894	0.0798152	0.0642879	0.184676	0.176933
chr10	131917788	131917888	4616194	0	+	0.55	(0.523,0.58]	chr10	441069	48	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	71	2	3.08569	4.40528	5.72487	0.020773	0.0163679	0.102713	0.0875379
chr15	67103622	67103722	6139454	0	+	0.57	(0.523,0.58]	chr15	603944	42	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1:ENST00000559092.1:ENST00000560175.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	71	2	3.08569	4.40528	5.72487	0.020773	0.0163679	0.102713	0.0875379
chr7	29238881	29238981	3334732	0	+	0.53	(0.523,0.58]	chr7	322843	405	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5:ENST00000222792.11:ENST00000409350.5:ENST00000409964.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	71	2	3.08569	4.40528	5.72487	0.020773	0.0163679	0.102713	0.0875379
chr4	3099794	3099894	2002827	0	+	0.46	(0.45,0.485]	chr4	204281	4	SS5_PROX	SS5_PROX:INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000680291.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	71	2	3.42543	4.40523	5.38503	0.0308908	0.0103881	0.119556	0.0682598
chr2	231970560	231970660	1051154	0	+	0.43	(0.419,0.45]	chr2	114515	84	INTRON	INTRON	DIS3L2	ENSG00000144535.20	ENST00000273009.10:ENST00000390005.9:ENST00000409401.7:ENST00000445090.5:ENST00000441279.5:ENST00000325385.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	91	2	2.85295	4.4052299999999995	5.95751	0.0703179	0.0017735	0.168159	0.02121
chr1	8748438	8748537	395040	0	-	0.444444	(0.419,0.45]	chr1	45069	454	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	91	2	2.88408	4.4052	5.92632	0.0674152	0.00191339	0.163486	0.0223437
chr11	70658927	70659027	5060864	0	-	0.41	(0.39,0.419]	chr11	492672	41	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	74	2	3.14029	4.405105	5.66992	0.0237738	0.0211243	0.105296	0.103778
chr7	138549764	138549864	3502906	0	+	0.45	(0.419,0.45]	chr7	337534	106	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	125	2	2.47479	4.405105	6.33542	0.068283	6.85495e-4	0.164651	0.0108846
chr7	47524136	47524236	3589054	0	-	0.7	(0.58,1]	chr7	346138	168	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	3.35086	4.40479	5.45872	0.0218816	0.00211999	0.101015	0.0239744
chr20	37394377	37394477	7473046	0	+	0.53	(0.523,0.58]	chr20	778187	1	SS5_PROX	SS5_PROX:INTRON	SRC	ENSG00000197122.13	ENST00000692112.1:ENST00000692423.1:ENST00000373578.7:ENST00000373567.6:ENST00000373558.2:ENST00000358208.9:ENST00000489153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	94	2	2.78812	4.404745	6.02137	0.0160129	0.00992924	0.0894586	0.0671959
chr1	1026444	1026543	979	0	+	0.606061	(0.58,1]	chr1	166	36	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.18518	4.404605	4.62403	0.0578275	0.0374658	0.154343	0.139793
chr1	17667192	17667292	54883	0	+	0.61	(0.58,1]	chr1	5603	22	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.18518	4.404605	4.62403	0.0578275	0.0374658	0.154343	0.139793
chr11	70582629	70582729	5060099	0	-	0.62	(0.58,1]	chr11	492663	793	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.18518	4.404605	4.62403	0.0578275	0.0374658	0.154343	0.139793
chr11	70816465	70816565	5062448	0	-	0.61	(0.58,1]	chr11	492713	89	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.18518	4.404605	4.62403	0.0578275	0.0374658	0.154343	0.139793
chr11	77813701	77813801	5085378	0	-	0.61	(0.58,1]	chr11	494800	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RSF1	ENSG00000048649.14	ENST00000308488.11:ENST00000528095.5:ENST00000440064.2:ENST00000467567.1:ENST00000530604.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	31	2	4.18518	4.404605	4.62403	0.0578275	0.0374658	0.154343	0.139793
chr12	117054091	117054187	5514416	0	-	0.614583	(0.58,1]	chr12	542876	2	INTRON	INTRON	TESC	ENSG00000088992.18	ENST00000470612.5:ENST00000335209.12:ENST00000541210.5:ENST00000462502.5:ENST00000482176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.18518	4.404605	4.62403	0.0578275	0.0374658	0.154343	0.139793
chr15	40107852	40107947	6235237	0	-	0.642105	(0.58,1]	chr15	613048	2	SS5_PROX	SS5_PROX:INTRON	BMF	ENSG00000104081.14	ENST00000354670.9:ENST00000558774.5:ENST00000559701.5:ENST00000557870.1:ENST00000560430.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.18518	4.404605	4.62403	0.0578275	0.0374658	0.154343	0.139793
chr16	81691174	81691274	6510223	0	+	0.59	(0.58,1]	chr16	645979	122	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.18518	4.404605	4.62403	0.0578275	0.0374658	0.154343	0.139793
chr22	46615585	46615685	7744331	0	+	0.63	(0.58,1]	chr22	812034	379	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000447351.5:ENST00000431155.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.18518	4.404605	4.62403	0.0578275	0.0374658	0.154343	0.139793
chr6	110406641	110406740	3232274	0	-	0.59596	(0.58,1]	chr6	313362	13	INTRON	INTRON	DDO	ENSG00000203797.12	ENST00000368923.8:ENST00000479373.1:ENST00000368924.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.18518	4.404605	4.62403	0.0578275	0.0374658	0.154343	0.139793
chr7	47345686	47345786	3587247	0	-	0.61	(0.58,1]	chr7	346025	1	SS5_PROX	SS5_PROX:INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.18518	4.404605	4.62403	0.0578275	0.0374658	0.154343	0.139793
chr8	628237	628337	3932002	0	-	0.6	(0.58,1]	chr8	376005	6	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.18518	4.404605	4.62403	0.0578275	0.0374658	0.154343	0.139793
chrX	119842442	119842525	8096131	0	-	0.614458	(0.58,1]	chrX	844034	3	INTRON	INTRON	UPF3B	ENSG00000125351.13	ENST00000276201.7:ENST00000345865.6:ENST00000478840.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.18518	4.404605	4.62403	0.0578275	0.0374658	0.154343	0.139793
chr16	89426160	89426259	6661095	0	-	0.313131	(0.29,0.33]	chr16	666747	74	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	70	2	3.45065	4.40456	5.35847	0.0269557	0.0094921	0.112113	0.0650078
chr6	167908564	167908661	3074170	0	+	0.28866000000000003	[0,0.29]	chr6	298866	9	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	68	2	3.18452	4.40451	5.6245	0.0159504	0.0120701	0.0893563	0.0745322
chr6	158627615	158627712	3064583	0	+	0.701031	(0.58,1]	chr6	297758	15	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	4	266	2	3.53186	4.40447	5.27708	0.00426478	2.96619e-5	0.042324	0.00111595
chr4	123102692	123102792	2120407	0	+	0.3	(0.29,0.33]	chr4	215760	5	INTRON	INTRON	SPATA5	ENSG00000145375.9	ENST00000675612.1:ENST00000274008.5	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.28897	4.404345	5.51972	0.0208628	0.0137233	0.0991037	0.0814223
chr22	28919180	28919280	7705633	0	+	0.38	(0.36,0.39]	chr22	806321	13	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7:ENST00000402174.5	protein_coding	protein_coding	protein_coding	protein_coding	3	269	2	4.37848	4.4041049999999995	4.42973	0.00531106	3.22801e-4	0.047841	0.00638477
chr1	43566298	43566398	107102	0	+	0.34	(0.33,0.36]	chr1	13192	120	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.31234	4.4040300000000006	4.49572	0.103264	0.0458858	0.197541	0.154743
chr12	1065465	1065565	5151017	0	+	0.35	(0.33,0.36]	chr12	500785	365	INTRON	INTRON	ERC1	ENSG00000082805.21	ENST00000611180.5:ENST00000543086.7:ENST00000360905.9:ENST00000691018.1:ENST00000690948.1:ENST00000542302.6:ENST00000546231.6:ENST00000545318.3:ENST00000347735.10:ENST00000397203.7:ENST00000536573.7:ENST00000690222.1:ENST00000686476.1:ENST00000692909.1:ENST00000592048.5:ENST00000440394.7:ENST00000545948.5:ENST00000589028.6:ENST00000355446.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.31234	4.4040300000000006	4.49572	0.103264	0.0458858	0.197541	0.154743
chr14	94181117	94181217	5901482	0	+	0.36	(0.33,0.36]	chr14	576768	46	INTRON	INTRON	PPP4R4	ENSG00000119698.12	ENST00000556884.5:ENST00000555690.5:ENST00000304338.8:ENST00000328839.3:ENST00000553661.5:ENST00000556470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.31234	4.4040300000000006	4.49572	0.103264	0.0458858	0.197541	0.154743
chr18	34518630	34518730	7040499	0	+	0.36	(0.33,0.36]	chr18	719067	48	INTRON	INTRON	DTNA	ENSG00000134769.23	ENST00000682923.1:ENST00000596745.5:ENST00000283365.14:ENST00000315456.10:ENST00000684266.1:ENST00000598774.6:ENST00000683379.1:ENST00000683092.1:ENST00000684359.1:ENST00000679936.1:ENST00000682406.1:ENST00000682483.1:ENST00000590412.5:ENST00000680366.1:ENST00000679372.1:ENST00000684560.1:ENST00000681470.1:ENST00000684734.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.31234	4.4040300000000006	4.49572	0.103264	0.0458858	0.197541	0.154743
chr10	131920283	131920383	4616219	0	+	0.57	(0.523,0.58]	chr10	441069	73	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	73	2	2.92656	4.40364	5.88072	0.0289226	0.0126258	0.124	0.0761905
chr20	43516274	43516371	7480678	0	+	0.371134	(0.36,0.39]	chr20	779290	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	L3MBTL1	ENSG00000185513.17	ENST00000649501.1:ENST00000439769.2:ENST00000649084.1:ENST00000418998.7:ENST00000427442.8:ENST00000649917.1:ENST00000647860.1:ENST00000649698.1:ENST00000422861.3:ENST00000473289.2:ENST00000648786.1:ENST00000648715.1:ENST00000648570.1:ENST00000650071.1:ENST00000650484.1:ENST00000648421.1:ENST00000373135.8:ENST00000373134.5:ENST00000430781.7:ENST00000457824.5:ENST00000473981.2:ENST00000647827.1:ENST00000445228.6:ENST00000648774.1:ENST00000497347.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	200	2	4.04301	4.403264999999999	4.76352	0.010474	3.93807e-4	0.068997	0.00738728
chr6	137868830	137868929	3010375	0	+	0.464646	(0.45,0.485]	chr6	294494	7	INTRON	INTRON	TNFAIP3	ENSG00000118503.16	ENST00000421450.1:ENST00000612899.5:ENST00000420009.5:ENST00000237289.8:ENST00000433680.1	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	3.46316	4.403085	5.34301	0.0328801	0.00952494	0.122593	0.0650078
chr7	92665143	92665243	3637248	0	-	0.32	(0.29,0.33]	chr7	350304	230	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	3	113	2	2.67376	4.402925	6.13209	0.0132113	0.00731667	0.0793133	0.0568523
chr7	47349643	47349743	3587287	0	-	0.52	(0.485,0.523]	chr7	346030	29	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	94	2	3.11352	4.40276	5.692	0.0171772	0.00747179	0.0895975	0.0555092
chr6	144707821	144707921	3024149	0	+	0.36	(0.33,0.36]	chr6	295457	72	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000367526.8	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	2.82822	4.402675	5.97713	0.0666181	0.00133012	0.162606	0.0173248
chr5	171985029	171985129	2810087	0	-	0.37	(0.36,0.39]	chr5	275186	74	INTRON	INTRON	FBXW11	ENSG00000072803.18	ENST00000296933.10:ENST00000517395.6:ENST00000265094.9:ENST00000393802.6:ENST00000523843.5:ENST00000519693.5:ENST00000520376.1:ENST00000522507.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	75	2	3.65573	4.402655	5.14958	0.0493212	0.0067964	0.146207	0.0524192
chrX	133656034	133656134	8112716	0	-	0.37	(0.36,0.39]	chrX	845480	591	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000692074.1:ENST00000667662.1:ENST00000666017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	75	2	3.65573	4.402655	5.14958	0.0493212	0.0067964	0.146207	0.0524192
chr19	15644741	15644836	7215401	0	+	0.6	(0.58,1]	chr19	737139	3	INTRON	INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	70	2	2.84993	4.402235	5.95454	0.0297842	0.0059453	0.126591	0.0506158
chr1	44802032	44802107	114927	0	+	0.52	(0.485,0.523]	chr1	14240	1	SS5_PROX	SS5_PROX:INTRON	PLK3	ENSG00000173846.13	ENST00000372201.5:ENST00000465443.5:ENST00000476731.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	85	2	3.10938	4.402075	5.69477	0.0416572	0.00203227	0.136301	0.0232814
chr8	108207667	108207766	4038775	0	-	0.313131	(0.29,0.33]	chr8	385490	38	INTRON	INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000677524.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000677317.1:ENST00000676530.1:ENST00000677696.1:ENST00000519517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	84	2	3.1147	4.40205	5.6894	0.0398517	0.00217863	0.133954	0.0243976
chr11	70775758	70775858	5062039	0	-	0.42	(0.419,0.45]	chr11	492701	579	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	77	2	2.92337	4.401905	5.88044	0.0333415	0.0192645	0.133139	0.0954446
chr8	22387365	22387464	3770222	0	+	0.454545	(0.45,0.485]	chr8	362727	75	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	4	132	2	2.63826	4.401885	6.16551	0.0108726	0.00879664	0.0706366	0.0630845
chr7	129196291	129196391	3475256	0	+	0.43	(0.419,0.45]	chr7	335896	38	INTRON	INTRON	SMO	ENSG00000128602.11	ENST00000249373.8:ENST00000655644.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	103	2	3.59812	4.4016	5.20508	0.023651	0.00979452	0.105002	0.0664239
chr2	238269174	238269274	1388925	0	-	0.36	(0.33,0.36]	chr2	148517	2	SS3_PROX	SS3_PROX:INTRON	PER2	ENSG00000132326.12	ENST00000254657.8:ENST00000355768.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	72	2	3.26334	4.4014999999999995	5.53966	0.0251076	0.0156643	0.107672	0.0878971
chr16	85397932	85398032	6517050	0	+	0.63	(0.58,1]	chr16	646391	386	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	2.71042	4.40149	6.09256	0.0396128	0.00452436	0.143388	0.0436138
chr7	215761	215861	3305812	0	+	0.71	(0.58,1]	chr7	320161	64	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	2	105	2	2.73869	4.401315	6.06394	0.0310664	3.80904e-4	0.119778	0.00721291
chr13	113588444	113588544	5658884	0	+	0.57	(0.523,0.58]	chr13	555775	22	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	93	2	2.98195	4.40117	5.82039	0.0139724	0.010154	0.0805959	0.0677546
chr4	3367783	3367883	2005114	0	+	0.59	(0.58,1]	chr4	204663	244	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	106	2	2.2895	4.40066	6.51182	0.0665599	9.48877e-5	0.162495	0.00262417
chr16	89489115	89489193	6661726	0	-	0.448718	(0.419,0.45]	chr16	666756	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	101	2	3.10514	4.40027	5.6954	0.0254103	0.00938681	0.108573	0.064735
chr15	51971387	51971487	6261342	0	-	0.69	(0.58,1]	chr15	617019	3	SS5_PROX	SS5_PROX:INTRON	LEO1	ENSG00000166477.13	ENST00000299601.10:ENST00000315141.5	protein_coding	protein_coding	protein_coding	protein_coding	2	180	2	4.04556	4.40025	4.75494	0.00148416	0.00123949	0.0214143	0.0186585
chr16	75241774	75241871	6644532	0	-	0.628866	(0.58,1]	chr16	664425	33	INTRON	INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10:ENST00000569340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	86	2	2.93515	4.40003	5.86491	0.00938921	0.00707578	0.064735	0.0558168
chr11	129845136	129845236	4965066	0	+	0.36	(0.33,0.36]	chr11	479911	165	INTRON	INTRON	TMEM45B	ENSG00000151715.8	ENST00000281441.8:ENST00000527754.1:ENST00000529381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	98	2	3.62814	4.39983	5.17152	0.0193673	0.00887848	0.0955376	0.0618231
chr2	61537203	61537289	1158368	0	-	0.674419	(0.58,1]	chr2	126970	2	SS5_PROX	SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676789.1:ENST00000678741.1:ENST00000406957.5:ENST00000443240.5:ENST00000481214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	107	2	2.37881	4.399795	6.42078	0.0219036	0.00230938	0.106977	0.0302623
chr2	69982019	69982118	1177774	0	-	0.525253	(0.523,0.58]	chr2	128115	55	INTRON	INTRON	PCBP1-AS1	ENSG00000179818.16	ENST00000419542.5:ENST00000682294.1:ENST00000684630.1:ENST00000630975.3:ENST00000435880.6:ENST00000629339.3:ENST00000667874.1:ENST00000628659.2:ENST00000628308.2:ENST00000626515.2:ENST00000625447.2:ENST00000628305.2:ENST00000625625.2:ENST00000625864.2:ENST00000630522.2:ENST00000628837.2:ENST00000627325.2:ENST00000629909.2:ENST00000626343.2:ENST00000625838.2:ENST00000629084.2:ENST00000629603.2:ENST00000625215.2:ENST00000627189.2:ENST00000629836.2:ENST00000626898.2:ENST00000628883.2:ENST00000629533.2:ENST00000627181.2:ENST00000630214.2:ENST00000627918.2:ENST00000628374.2:ENST00000627327.2:ENST00000626495.2:ENST00000629605.2:ENST00000626370.2:ENST00000626834.2:ENST00000628920.2:ENST00000626735.2:ENST00000625691.2:ENST00000628201.2:ENST00000626842.2:ENST00000630457.2:ENST00000629184.2:ENST00000628551.2:ENST00000630746.2:ENST00000627398.2:ENST00000457076.5:ENST00000625783.2:ENST00000625490.2:ENST00000627050.2:ENST00000630759.2:ENST00000628667.2:ENST00000626632.2:ENST00000631110.2:ENST00000626609.2:ENST00000625888.2:ENST00000629506.2:ENST00000630985.2:ENST00000413436.5:ENST00000628147.2:ENST00000631107.2:ENST00000629415.2:ENST00000418564.5:ENST00000630280.2:ENST00000415222.5:ENST00000628322.2:ENST00000626440.2:ENST00000628455.2	lncRNA	lncRNA	lncRNA	lncRNA	3	261	2	3.84363	4.3995750000000005	4.95552	0.00148364	0.00104505	0.0236439	0.0146403
chr13	112817806	112817906	5653825	0	+	0.47	(0.45,0.485]	chr13	554938	12	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000459908.5:ENST00000418678.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	71	2	3.22036	4.39945	5.57854	0.0230065	0.016408	0.102982	0.0911382
chr3	196470348	196470446	1988022	0	-	0.5	(0.485,0.523]	chr3	202391	17	UTR3	UTR3:EXON_MRNA	RNF168	ENSG00000163961.4	ENST00000318037.3	protein_coding	protein_coding	protein_coding	protein_coding	1	86	2	3.22297	4.399100000000001	5.57523	0.0348463	0.00274261	0.126697	0.028553
chr20	34072330	34072430	7460395	0	+	0.44	(0.419,0.45]	chr20	776605	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000413297.5:ENST00000246194.8:ENST00000333552.9:ENST00000442805.1:ENST00000493399.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	100	2	2.97682	4.39909	5.82136	0.0210659	0.0125682	0.0996078	0.076738700000000007
chr7	2050110	2050209	3530733	0	-	0.666667	(0.58,1]	chr7	340995	351	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	65	2	3.68463	4.39909	5.11355	0.0271806	0.00404771	0.112113	0.0371291
chr17	43543079	43543179	6909599	0	-	0.63	(0.58,1]	chr17	703271	62	INTRON	INTRON	ETV4	ENSG00000175832.13	ENST00000538265.5:ENST00000319349.10:ENST00000393664.6:ENST00000545954.5:ENST00000545089.5:ENST00000591713.5:ENST00000590236.5:ENST00000585508.5:ENST00000587151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	256	2	4.07566	4.39869	4.72172	0.00133472	1.61808e-4	0.0223284	0.00388325
chr15	84211103	84211203	6342791	0	-	0.45	(0.419,0.45]	chr15	625266	54	INTRON	INTRON	GOLGA2P7	ENSG00000225151.10	ENST00000400817.7:ENST00000559668.5:ENST00000316967.10:ENST00000559654.5:ENST00000557980.5:ENST00000557881.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	96	2	3.35317	4.39862	5.44407	0.0344362	0.00585948	0.126025	0.0474117
chr17	2678825	2678923	6667318	0	+	0.428571	(0.419,0.45]	chr17	667990	8	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000397195.10:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000397193.7:ENST00000574468.1:ENST00000571495.2:ENST00000675574.1:ENST00000675385.1:ENST00000675084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	91	2	2.72124	4.398595	6.07595	0.0837482	0.00132452	0.181508	0.0173138
chr11	68353391	68353489	4882492	0	+	0.642857	(0.58,1]	chr11	470548	48	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	80	2	3.43525	4.39839	5.36153	0.0187495	0.00273899	0.0936297	0.028553
chr19	18469089	18469188	7347882	0	-	0.606061	(0.58,1]	chr19	761486	28	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	80	2	3.43525	4.39839	5.36153	0.0187495	0.00273899	0.0936297	0.028553
chr20	33017858	33017958	7457473	0	+	0.47	(0.45,0.485]	chr20	776396	2	SS3_PROX	SS3_PROX:INTRON	BPIFB2	ENSG00000078898.7	ENST00000170150.4	protein_coding	protein_coding	protein_coding	protein_coding	2	190	2	4.13769	4.3983550000000005	4.65902	0.00783394	4.2306e-4	0.0592199	0.00776857
chr2	168464116	168464216	944257	0	+	0.4	(0.39,0.419]	chr2	103959	71	INTRON	INTRON	CERS6	ENSG00000172292.15	ENST00000392687.4:ENST00000305747.11	protein_coding	protein_coding	protein_coding	protein_coding	2	134	2	3.06419	4.398065	5.73194	0.0266913	0.00276973	0.111597	0.0286873
chr1	245797741	245797841	698749	0	-	0.47	(0.45,0.485]	chr1	82352	89	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000490322.1:ENST00000493441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	32	2	4.22352	4.398009999999999	4.5725	0.0926859	0.0496712	0.188571	0.160725
chr11	112253580	112253680	4942400	0	+	0.46	(0.45,0.485]	chr11	476600	157	INTRON	INTRON	PTS	ENSG00000150787.8	ENST00000531673.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	0	32	2	4.22352	4.398009999999999	4.5725	0.0926859	0.0496712	0.188571	0.160725
chr2	235721688	235721787	1064821	0	+	0.454545	(0.45,0.485]	chr2	115681	29	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.22352	4.398009999999999	4.5725	0.0926859	0.0496712	0.188571	0.160725
chr6	73605619	73605718	3182438	0	-	0.474747	(0.45,0.485]	chr6	308876	48	INTRON	INTRON	SLC17A5	ENSG00000119899.13	ENST00000355773.6	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.22352	4.398009999999999	4.5725	0.0926859	0.0496712	0.188571	0.160725
chr6	1939389	1939489	3082268	0	-	0.48	(0.45,0.485]	chr6	299487	85	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000531690.5:ENST00000530459.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	73	2	3.73402	4.3977	5.06138	0.0492008	0.0049945	0.146142	0.0428203
chr12	27581929	27582028	5192119	0	+	0.444444	(0.419,0.45]	chr12	505094	33	INTRON	INTRON	PPFIBP1	ENSG00000110841.14	ENST00000538433.5:ENST00000545381.5:ENST00000545334.5:ENST00000540114.5:ENST00000541633.5:ENST00000537927.5:ENST00000228425.11:ENST00000318304.12:ENST00000535047.5:ENST00000542629.5:ENST00000535575.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	1	74	2	3.23773	4.39756	5.55739	0.0310506	0.0178095	0.119758	0.0943752
chrX	133686682	133686782	8113025	0	-	0.38	(0.36,0.39]	chrX	845486	245	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000667662.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	331	2	4.38528	4.3975550000000005	4.40983	0.00575055	1.51708e-4	0.0499659	0.00370923
chr16	84746272	84746372	6514294	0	+	0.39	(0.36,0.39]	chr16	646296	2	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000563892.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	73	2	3.42171	4.39739	5.37307	0.0361409	0.0115651	0.127853	0.0732257
chr20	47256908	47257007	7569883	0	-	0.434343	(0.419,0.45]	chr20	791018	71	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	75	2	3.06656	4.39725	5.72794	0.0252325	0.0242188	0.114921	0.106588
chr8	120684300	120684400	4058745	0	-	0.39	(0.36,0.39]	chr8	386601	289	INTRON	INTRON	SNTB1	ENSG00000172164.15	ENST00000395601.7:ENST00000517992.2:ENST00000648490.1:ENST00000519177.5:ENST00000519298.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	416	2	4.19238	4.396965	4.60155	0.00808562	5.61409e-5	0.0602136	0.00178674
chr21	43744470	43744560	7624055	0	+	0.611111	(0.58,1]	chr21	796750	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000498040.5:ENST00000472777.5:ENST00000481512.5:ENST00000490666.5:ENST00000467908.1:ENST00000343528.10:ENST00000398078.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	98	2	2.27185	4.396915	6.52198	0.0433824	0.00186556	0.152119	0.0269723
chr13	75449476	75449576	5727679	0	-	0.45	(0.419,0.45]	chr13	561722	723	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	2	206	2	4.16516	4.396855	4.62855	0.00938072	6.21482e-4	0.0652879	0.0101764
chr16	4081770	4081870	6541448	0	-	0.64	(0.58,1]	chr16	650517	277	INTRON	INTRON	ADCY9	ENSG00000162104.10	ENST00000294016.8:ENST00000571467.1:ENST00000572288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	64	2	3.44157	4.396855	5.35214	0.0181452	0.00760198	0.0921579	0.0561937
chr17	15468717	15468817	6860122	0	-	0.53	(0.523,0.58]	chr17	695071	12	INTRON	INTRON	TVP23C-CDRT4:CDRT4	ENSG00000259024.6:ENSG00000239704.11	ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	95	2	3.28117	4.39682	5.51247	0.0230387	0.00481434	0.102982	0.041723
chr10	34683668	34683768	4670493	0	-	0.56	(0.523,0.58]	chr10	445537	41	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.4003	4.396785	5.39327	0.0277354	0.0103016	0.112851	0.0678983
chr11	18010930	18011028	5015368	0	-	0.44898	(0.419,0.45]	chr11	484704	4	INTRON	INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528200.5:ENST00000532265.5:ENST00000529728.5:ENST00000530613.5:ENST00000532389.5:ENST00000530925.5:ENST00000533328.5:ENST00000532212.5:ENST00000524716.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	215	2	4.32098	4.39659	4.4722	0.00553452	0.00139866	0.0491917	0.0179877
chr22	46830192	46830292	7745690	0	+	0.57	(0.523,0.58]	chr22	812199	322	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	70	2	3.13506	4.396275	5.65749	0.0186841	0.0182707	0.0976296	0.0921579
chr21	44867429	44867528	7678516	0	-	0.555556	(0.523,0.58]	chr21	802773	14	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	706	2	3.74722	4.39621	5.0452	0.00212023	1.14382e-4	0.028925	0.00303044
chr1	248854145	248854239	709834	0	-	0.595745	(0.58,1]	chr1	83011	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ZNF692	ENSG00000171163.16	ENST00000463519.5:ENST00000306601.9:ENST00000366471.7:ENST00000533927.5:ENST00000476503.5:ENST00000477070.6:ENST00000412341.6:ENST00000482023.5:ENST00000451251.5:ENST00000470787.6:ENST00000462037.6:ENST00000474351.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	160	2	4.10163	4.395935	4.69024	0.00506731	2.07711e-4	0.0465789	0.00464072
chr3	105669137	105669236	1860948	0	-	0.383838	(0.36,0.39]	chr3	189731	96	INTRON	INTRON	CBLB	ENSG00000114423.23	ENST00000645759.1:ENST00000394030.8:ENST00000476370.1:ENST00000646499.1:ENST00000645425.1:ENST00000642241.1:ENST00000407712.1:ENST00000646825.1:ENST00000643322.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	79	2	2.73813	4.39587	6.05361	0.0459393	0.0127951	0.154743	0.0769416
chr22	36013544	36013644	7805677	0	-	0.4	(0.39,0.419]	chr22	817798	520	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.41977	4.395745	5.37172	0.0367885	0.0116434	0.129052	0.0736274
chr14	104891414	104891511	5926140	0	+	0.670103	(0.58,1]	chr14	579999	13	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	3.19823	4.395735	5.59324	0.0287301	0.0014734	0.115888	0.0185589
chr6	41586508	41586603	2912916	0	+	0.536842	(0.523,0.58]	chr6	285787	1	SS3_PROX	SS3_PROX:INTRON	FOXP4	ENSG00000137166.17	ENST00000307972.10:ENST00000373063.7:ENST00000409208.5:ENST00000373057.7	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.44013	4.395685	5.35124	0.0295772	0.00938609	0.116079	0.064735
chr17	31313704	31313804	6717051	0	+	0.3	(0.29,0.33]	chr17	674618	137	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000456735.6:ENST00000493220.5:ENST00000687863.1:ENST00000581113.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	71	2	3.66355	4.395625	5.1277	0.0382902	0.00571018	0.131324	0.0467736
chr11	128460160	128460260	5140366	0	-	0.39	(0.36,0.39]	chr11	499688	15	UTR3	UTR3:EXON_MRNA	ETS1	ENSG00000134954.14	ENST00000535549.5:ENST00000392668.8:ENST00000526145.6	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.09186	4.39559	4.69932	0.0877431	0.0687088	0.193274	0.183437
chr5	10431711	10431810	2383230	0	+	0.373737	(0.36,0.39]	chr5	238451	13	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	33	2	4.09186	4.39559	4.69932	0.0877431	0.0687088	0.193274	0.183437
chr6	104992441	104992541	2967218	0	+	0.37	(0.36,0.39]	chr6	291235	338	INTRON	INTRON	LIN28B	ENSG00000187772.8	ENST00000635857.1:ENST00000637759.1:ENST00000345080.5	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.09186	4.39559	4.69932	0.0877431	0.0687088	0.193274	0.183437
chr6	158233902	158234002	3060854	0	+	0.37	(0.36,0.39]	chr6	297572	12	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	33	2	4.09186	4.39559	4.69932	0.0877431	0.0687088	0.193274	0.183437
chr9	87559265	87559365	4176042	0	+	0.53	(0.523,0.58]	chr9	397141	339	INTRON	INTRON	DAPK1	ENSG00000196730.13	ENST00000358077.9:ENST00000469640.6:ENST00000472284.5:ENST00000469067.5:ENST00000408954.8:ENST00000622514.4:ENST00000496522.5:ENST00000472344.1:ENST00000491893.5:ENST00000489291.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	69	2	3.31719	4.395505	5.47382	0.0244797	0.0124719	0.106683	0.0765738
chr10	75473410	75473510	4520892	0	+	0.5	(0.485,0.523]	chr10	432249	218	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	93	2	2.96979	4.3953	5.82081	0.0138807	0.0105977	0.0804838	0.069518
chr5	139654861	139654960	2549709	0	+	0.686869	(0.58,1]	chr5	253168	33	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	3.37954	4.39524	5.41094	0.0207688	0.00240622	0.098873	0.0261006
chr10	18561164	18561264	4642340	0	-	0.4	(0.39,0.419]	chr10	443321	88	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	0	33	2	4.09132	4.39465	4.69798	0.088901	0.0689553	0.193274	0.183874
chr6	2835167	2835261	3085371	0	-	0.404255	(0.39,0.419]	chr6	299537	8	INTRON	INTRON	SERPINB1	ENSG00000021355.13	ENST00000380739.6:ENST00000468511.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.09132	4.39465	4.69798	0.088901	0.0689553	0.193274	0.183874
chr9	129501989	129502071	4250797	0	+	0.402439	(0.39,0.419]	chr9	404728	1	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1:ENST00000427778.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	0	33	2	4.09132	4.39465	4.69798	0.088901	0.0689553	0.193274	0.183874
chr16	501908	502007	6367559	0	+	0.59596	(0.58,1]	chr16	627807	46	INTRON	INTRON	RAB11FIP3	ENSG00000090565.17	ENST00000262305.9:ENST00000434585.5:ENST00000450428.5:ENST00000452814.5:ENST00000449879.6	protein_coding	protein_coding	protein_coding	protein_coding	2	89	2	2.6194	4.394425	6.16945	0.0202577	0.00387582	0.102015	0.0401256
chr20	8317061	8317161	7428435	0	+	0.45	(0.419,0.45]	chr20	773693	103	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	425	2	3.54255	4.39437	5.24619	0.00137403	0.001002	0.0226376	0.014243
chr9	4717230	4717328	4269943	0	-	0.387755	(0.36,0.39]	chr9	407900	38	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.45756	4.39431	5.33106	0.0383628	0.0106804	0.131324	0.0700154
chr8	38969961	38970051	3803823	0	+	0.422222	(0.419,0.45]	chr8	366011	3	UTR3	UTR3:EXON_MRNA:INTRON	PLEKHA2	ENSG00000169499.15	ENST00000521746.5:ENST00000616927.4:ENST00000617275.5:ENST00000616834.1:ENST00000518939.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	188	2	3.80747	4.394005	4.98054	0.0154548	0.00827235	0.0869771	0.0610772
chr14	81522333	81522433	6023450	0	-	0.38	(0.36,0.39]	chr14	591194	157	INTRON	INTRON	SEL1L	ENSG00000071537.14	ENST00000336735.9:ENST00000555824.5:ENST00000557372.1	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.18563	4.393965	5.6023	0.0258522	0.0191961	0.109555	0.0994526
chr2	149630130	149630230	920247	0	+	0.35	(0.33,0.36]	chr2	102788	357	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	1	73	2	3.62829	4.3938	5.15931	0.043896	0.00687304	0.139792	0.0526888
chr2	163652904	163653004	1295491	0	-	0.35	(0.33,0.36]	chr2	139073	407	INTRON	INTRON	FIGN	ENSG00000182263.14	ENST00000409634.5:ENST00000333129.4:ENST00000482917.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	73	2	3.62829	4.3938	5.15931	0.043896	0.00687304	0.139792	0.0526888
chr12	26712549	26712647	5400384	0	-	0.377551	(0.36,0.39]	chr12	528698	9	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000540791.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	89	2	3.05499	4.393750000000001	5.73251	0.0505441	0.0027486	0.148456	0.028553
chr3	160501403	160501503	1951402	0	-	0.38	(0.36,0.39]	chr3	198362	65	UTR3	UTR3:EXON_MRNA	KPNA4	ENSG00000186432.10	ENST00000334256.9:ENST00000676866.1:ENST00000676799.1:ENST00000678630.1:ENST00000676958.1:ENST00000678020.1:ENST00000678765.1:ENST00000678839.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	120	2	2.89698	4.3933	5.88962	0.0166261	0.0088836	0.0884836	0.0618405
chr5	131517693	131517793	2756135	0	-	0.41	(0.39,0.419]	chr5	270104	60	INTRON	INTRON	RAPGEF6	ENSG00000158987.22	ENST00000509018.6:ENST00000507093.5:ENST00000296859.10:ENST00000627212.2:ENST00000308008.10:ENST00000515170.5:ENST00000510071.5:ENST00000514179.5:ENST00000513227.5:ENST00000504575.5:ENST00000504039.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	74	2	3.59071	4.39325	5.19579	0.0469937	0.00792247	0.143232	0.057762
chr6	2082199	2082298	3083701	0	-	0.414141	(0.39,0.419]	chr6	299503	389	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	3.59071	4.39325	5.19579	0.0469937	0.00792247	0.143232	0.057762
chr18	76410773	76410873	7179227	0	-	0.46	(0.45,0.485]	chr18	730080	301	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	3	114	2	2.71998	4.392835	6.06569	0.0122015	0.0104281	0.0757339	0.0687558
chr9	114204101	114204201	4226193	0	+	0.42	(0.419,0.45]	chr9	400776	77	INTRON	INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8:ENST00000451716.5:ENST00000494090.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	79	2	3.85261	4.392755	4.9329	0.0716557	0.00448861	0.168159	0.0399092
chr19	2049814	2049911	7308293	0	-	0.57732000000000006	(0.523,0.58]	chr19	753574	28	INTRON	INTRON	MKNK2	ENSG00000099875.16	ENST00000309340.11:ENST00000250896.9:ENST00000586828.5:ENST00000589509.5:ENST00000589534.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	85	2	3.16507	4.392415	5.61976	0.0382777	0.00236826	0.131324	0.0259199
chr17	317028	317128	6821446	0	-	0.59	(0.58,1]	chr17	689582	105	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	105	2	2.44972	4.3920449999999995	6.33437	0.0184955	0.00276493	0.096816	0.0332418
chr2	235511134	235511234	1062707	0	+	0.63	(0.58,1]	chr2	115651	159	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	119	2	2.32126	4.39169	6.46212	0.0184756	0.00211728	0.096739	0.028892
chr3	48978494	48978591	1465549	0	+	0.546392	(0.523,0.58]	chr3	156688	32	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000452385.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	84	2	3.04682	4.391455	5.73609	0.0459721	0.0017613	0.142664	0.0211077
chrX	109704882	109704982	8091184	0	-	0.32	(0.29,0.33]	chrX	843713	83	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000508092.5:ENST00000504383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	376	2	3.48748	4.39144	5.2954	8.20455e-4	6.58773e-4	0.0150779	0.0123981
chr17	958004	958104	6826415	0	-	0.52	(0.485,0.523]	chr17	690074	247	INTRON	INTRON	NXN	ENSG00000167693.17	ENST00000336868.8:ENST00000575171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	69	2	3.34812	4.391325	5.43453	0.0258944	0.0117752	0.109555	0.0743709
chr21	37368232	37368332	7618982	0	+	0.57	(0.523,0.58]	chr21	796010	1	SS5_PROX	SS5_PROX:INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6	protein_coding	protein_coding	protein_coding	protein_coding	2	93	2	2.78812	4.391215	5.99431	0.0160129	0.0104033	0.0894586	0.0686837
chr10	80503034	80503133	4535610	0	+	0.565657	(0.523,0.58]	chr10	432713	134	INTRON	INTRON	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000481124.5:ENST00000372158.6:ENST00000372157.6:ENST00000469149.1:ENST00000372164.7:ENST00000341863.10:ENST00000372156.5:ENST00000616406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.13061	4.39109	4.65157	0.0787008	0.0533354	0.175203	0.167062
chr10	103720075	103720175	4757301	0	-	0.55	(0.523,0.58]	chr10	454791	266	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.13061	4.39109	4.65157	0.0787008	0.0533354	0.175203	0.167062
chr11	68263966	68264066	5057259	0	-	0.54	(0.523,0.58]	chr11	492360	1	SS3_PROX	SS3_PROX:INTRON	C11orf24	ENSG00000171067.11	ENST00000304271.11:ENST00000533310.5:ENST00000530166.5:ENST00000527280.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.13061	4.39109	4.65157	0.0787008	0.0533354	0.175203	0.167062
chr11	70737887	70737987	5061660	0	-	0.56	(0.523,0.58]	chr11	492701	200	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.13061	4.39109	4.65157	0.0787008	0.0533354	0.175203	0.167062
chr16	85579240	85579340	6518865	0	+	0.55	(0.523,0.58]	chr16	646396	225	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.13061	4.39109	4.65157	0.0787008	0.0533354	0.175203	0.167062
chr18	13448171	13448269	7025058	0	+	0.55102	(0.523,0.58]	chr18	717583	40	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000610087.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.13061	4.39109	4.65157	0.0787008	0.0533354	0.175203	0.167062
chr2	239292269	239292369	1391631	0	-	0.54	(0.523,0.58]	chr2	148740	407	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	32	2	4.13061	4.39109	4.65157	0.0787008	0.0533354	0.175203	0.167062
chr2	241252066	241252164	1396388	0	-	0.55102	(0.523,0.58]	chr2	149396	12	INTRON	INTRON	HDLBP	ENSG00000115677.18	ENST00000391975.5:ENST00000427183.6:ENST00000310931.10:ENST00000391976.6:ENST00000373292.8:ENST00000498595.5:ENST00000477477.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	32	2	4.13061	4.39109	4.65157	0.0787008	0.0533354	0.175203	0.167062
chr20	32471809	32471908	7543584	0	-	0.575758	(0.523,0.58]	chr20	787364	63	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.13061	4.39109	4.65157	0.0787008	0.0533354	0.175203	0.167062
chr22	46616285	46616385	7744338	0	+	0.57	(0.523,0.58]	chr22	812034	386	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000447351.5:ENST00000431155.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.13061	4.39109	4.65157	0.0787008	0.0533354	0.175203	0.167062
chr3	10192286	10192386	1406801	0	+	0.57	(0.523,0.58]	chr3	151140	139	INTRON	INTRON	IRAK2	ENSG00000134070.5	ENST00000256458.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.13061	4.39109	4.65157	0.0787008	0.0533354	0.175203	0.167062
chr3	195943943	195944043	1985081	0	-	0.53	(0.523,0.58]	chr3	201965	194	INTRON	INTRON	ENSG00000260261	ENSG00000260261.2	ENST00000607976.2:ENST00000641484.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	32	2	4.13061	4.39109	4.65157	0.0787008	0.0533354	0.175203	0.167062
chr4	82846468	82846565	2268253	0	-	0.536082	(0.523,0.58]	chr4	228418	8	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000508479.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.13061	4.39109	4.65157	0.0787008	0.0533354	0.175203	0.167062
chr6	52506536	52506636	3147734	0	-	0.56	(0.523,0.58]	chr6	306993	4	SS3_PROX	SS3_PROX:INTRON	TRAM2	ENSG00000065308.5	ENST00000182527.4	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.13061	4.39109	4.65157	0.0787008	0.0533354	0.175203	0.167062
chr6	82005638	82005738	3190014	0	-	0.55	(0.523,0.58]	chr6	309363	362	INTRON	INTRON	LINC02542	ENSG00000226453.3	ENST00000667666.1:ENST00000663543.1:ENST00000668303.1:ENST00000660637.1:ENST00000668266.1:ENST00000666226.1	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.13061	4.39109	4.65157	0.0787008	0.0533354	0.175203	0.167062
chr7	32510466	32510565	3340918	0	+	0.555556	(0.523,0.58]	chr7	323305	143	INTRON	INTRON	AVL9	ENSG00000105778.20	ENST00000485228.1:ENST00000318709.9:ENST00000459629.1:ENST00000409301.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.13061	4.39109	4.65157	0.0787008	0.0533354	0.175203	0.167062
chr8	729345	729444	3933024	0	-	0.575758	(0.523,0.58]	chr8	376060	130	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.13061	4.39109	4.65157	0.0787008	0.0533354	0.175203	0.167062
chr13	113538459	113538558	5658666	0	+	0.636364	(0.58,1]	chr13	555722	33	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	65	2	3.72143	4.391064999999999	5.0607	0.029633	0.00366718	0.116079	0.0346803
chr7	2377475	2377575	3308497	0	+	0.61	(0.58,1]	chr7	320688	4	SS5_PROX	SS5_PROX:INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000475415.5:ENST00000468611.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	64	2	3.56821	4.39099	5.21377	0.0230012	0.00550024	0.102982	0.0454065
chr13	75433180	75433280	5727516	0	-	0.49	(0.485,0.523]	chr13	561722	560	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	3	253	2	3.335	4.390805	5.44661	0.0141019	3.41575e-5	0.0812274	0.00124277
chr4	82820736	82820836	2267984	0	-	0.42	(0.419,0.45]	chr4	228371	3	SS5_PROX	SS5_PROX:INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000515062.5:ENST00000264405.9:ENST00000505479.1:ENST00000505984.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	91	2	3.05795	4.39073	5.72351	0.0529681	0.00310292	0.149208	0.0311614
chr16	81451430	81451530	6507805	0	+	0.35	(0.33,0.36]	chr16	645906	55	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.211	4.390675	4.57035	0.0945416	0.0541541	0.188571	0.167824
chr17	28112505	28112605	6704803	0	+	0.36	(0.33,0.36]	chr17	673022	637	INTRON	INTRON	NLK	ENSG00000087095.13	ENST00000407008.8:ENST00000496808.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.211	4.390675	4.57035	0.0945416	0.0541541	0.188571	0.167824
chr17	48845166	48845258	6749508	0	+	0.347826	(0.33,0.36]	chr17	680146	8	INTRON	INTRON	CALCOCO2	ENSG00000136436.15	ENST00000503463.5:ENST00000509507.5:ENST00000448105.6:ENST00000258947.8:ENST00000508679.5:ENST00000416445.6:ENST00000513119.5:ENST00000509415.5:ENST00000570513.5:ENST00000575560.5:ENST00000576582.5:ENST00000505071.5:ENST00000507076.1:ENST00000502761.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	32	2	4.211	4.390675	4.57035	0.0945416	0.0541541	0.188571	0.167824
chr4	103065211	103065310	2296075	0	-	0.343434	(0.33,0.36]	chr4	230898	69	INTRON	INTRON	SLC9B2	ENSG00000164038.16	ENST00000362026.7:ENST00000394785.9:ENST00000503103.5:ENST00000503230.5:ENST00000515424.5:ENST00000503818.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.211	4.390675	4.57035	0.0945416	0.0541541	0.188571	0.167824
chr3	10191787	10191887	1406796	0	+	0.32	(0.29,0.33]	chr3	151140	134	INTRON	INTRON	IRAK2	ENSG00000134070.5	ENST00000256458.5	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	2.95342	4.390545	5.82767	0.0280419	0.0124924	0.121542	0.0761905
chr15	82498890	82498989	6340193	0	-	0.313131	(0.29,0.33]	chr15	625050	206	INTRON	INTRON	GOLGA2P10	ENSG00000255769.7	ENST00000618004.4:ENST00000614347.4:ENST00000618267.4:ENST00000612379.4:ENST00000619738.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	32	2	4.12201	4.390345	4.65868	0.0735584	0.0564091	0.171933	0.17026
chr16	3784172	3784272	6538970	0	-	0.31	(0.29,0.33]	chr16	650387	3	SS5_PROX	SS5_PROX:INTRON	CREBBP	ENSG00000005339.15	ENST00000262367.10:ENST00000382070.7:ENST00000636002.1:ENST00000635753.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.12201	4.390345	4.65868	0.0735584	0.0564091	0.171933	0.17026
chr2	36532883	36532983	759426	0	+	0.31	(0.29,0.33]	chr2	88048	35	INTRON	INTRON	CRIM1	ENSG00000150938.10	ENST00000280527.7	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.12201	4.390345	4.65868	0.0735584	0.0564091	0.171933	0.17026
chr9	77901061	77901161	4320545	0	-	0.51	(0.485,0.523]	chr9	412901	849	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.4289	4.390285	5.35167	0.0294163	0.00977282	0.116079	0.0664239
chr16	30992027	30992126	6579801	0	-	0.515152	(0.485,0.523]	chr16	657721	29	UTR3	UTR3:EXON_MRNA	STX1B	ENSG00000099365.11	ENST00000215095.11	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.30597	4.39011	5.47425	0.0243396	0.012958	0.106588	0.0778899
chr22	41513720	41513816	7733642	0	+	0.489583	(0.485,0.523]	chr22	810519	14	INTRON	INTRON	ACO2	ENSG00000100412.17	ENST00000676748.1:ENST00000677554.1:ENST00000679320.1:ENST00000678600.1:ENST00000678394.1:ENST00000676792.1:ENST00000678688.1:ENST00000677516.1:ENST00000678788.1:ENST00000677007.1:ENST00000676959.1:ENST00000679311.1:ENST00000216254.9:ENST00000676714.1:ENST00000466237.2:ENST00000677427.1:ENST00000678454.1:ENST00000677153.1:ENST00000678819.1:ENST00000396512.3:ENST00000678269.1:ENST00000677532.1:ENST00000679264.1:ENST00000677698.1:ENST00000676822.1:ENST00000676664.1:ENST00000478010.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	69	2	3.30597	4.39011	5.47425	0.0243396	0.012958	0.106588	0.0778899
chr2	235046617	235046716	1062441	0	+	0.444444	(0.419,0.45]	chr2	115634	30	INTRON	INTRON	SH3BP4	ENSG00000130147.16	ENST00000392011.7:ENST00000409212.5:ENST00000344528.8	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.02039	4.39007	5.75975	0.0276403	0.0231013	0.120359	0.102982
chr9	135890155	135890254	4431658	0	-	0.575758	(0.523,0.58]	chr9	423549	67	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.51663	4.389975	5.26332	0.0337698	0.00782908	0.124319	0.0574276
chr7	6700520	6700620	3542718	0	-	0.46	(0.45,0.485]	chr7	342315	3	SS5_PROX	SS5_PROX:INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000404360.5:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	3.17691	4.389945	5.60298	0.0393744	0.00292492	0.132578	0.029882
chr16	29274212	29274312	6433579	0	+	0.46	(0.45,0.485]	chr16	636745	221	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	4	132	2	2.2345	4.389725	6.54495	0.027703	0.00450754	0.120621	0.0436138
chr4	152529972	152530072	2355592	0	-	0.5	(0.485,0.523]	chr4	235300	402	INTRON	INTRON	FBXW7	ENSG00000109670.16	ENST00000281708.10:ENST00000603548.6:ENST00000604872.6:ENST00000647166.1:ENST00000643834.1:ENST00000642901.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.12717	4.389575	4.65198	0.0783889	0.0545434	0.175203	0.167824
chr7	47381111	47381211	3587603	0	-	0.52	(0.485,0.523]	chr7	346036	111	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.12717	4.389575	4.65198	0.0783889	0.0545434	0.175203	0.167824
chrX	1448673	1448772	7965980	0	-	0.515152	(0.485,0.523]	chrX	834314	60	INTRON	INTRON	ASMTL	ENSG00000169093.16	ENST00000534940.6:ENST00000381317.9:ENST00000381333.9:ENST00000474865.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.12717	4.389575	4.65198	0.0783889	0.0545434	0.175203	0.167824
chr10	103698913	103699013	4757089	0	-	0.58	(0.523,0.58]	chr10	454791	54	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	69	2	3.229	4.3895599999999995	5.55012	0.0217068	0.0152072	0.100615	0.0861813
chr19	34394466	34394566	7243299	0	+	0.56	(0.523,0.58]	chr19	741727	4	SS5_PROX	SS5_PROX:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000589985.5:ENST00000586392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	69	2	3.229	4.3895599999999995	5.55012	0.0217068	0.0152072	0.100615	0.0861813
chr3	195710670	195710769	1665025	0	+	0.545455	(0.523,0.58]	chr3	174623	12	INTRON	INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000420851.6:ENST00000431767.5:ENST00000451228.5:ENST00000438608.5:ENST00000445707.3:ENST00000630874.2:ENST00000432194.7:ENST00000420459.5:ENST00000424730.5:ENST00000417704.5:ENST00000595086.5:ENST00000600197.1:ENST00000594446.5:ENST00000629537.2:ENST00000627035.2:ENST00000631359.2:ENST00000629721.2:ENST00000597662.5:ENST00000599566.5:ENST00000600288.5:ENST00000626872.2:ENST00000630197.2:ENST00000594976.5:ENST00000612098.4:ENST00000615212.4:ENST00000594101.3:ENST00000628439.2:ENST00000631352.2:ENST00000626904.2:ENST00000600382.5:ENST00000627863.2:ENST00000628668.2:ENST00000628053.2:ENST00000625971.2:ENST00000630675.2:ENST00000597982.5:ENST00000630387.2:ENST00000626585.2:ENST00000595382.5:ENST00000627016.2:ENST00000626566.2:ENST00000625383.2:ENST00000626979.2:ENST00000628392.2:ENST00000627471.2:ENST00000625531.2:ENST00000626852.2:ENST00000593988.2:ENST00000626233.2:ENST00000628508.2:ENST00000628003.2:ENST00000631263.2:ENST00000629511.2:ENST00000627356.2:ENST00000631345.2:ENST00000631037.2:ENST00000626346.2:ENST00000628567.2:ENST00000432601.3:ENST00000627689.2:ENST00000628754.2:ENST00000629807.2:ENST00000628125.2:ENST00000630415.2:ENST00000627609.1:ENST00000627993.2:ENST00000628982.1:ENST00000597871.1:ENST00000455807.2:ENST00000627297.2:ENST00000625665.1:ENST00000626093.1	lncRNA	lncRNA	lncRNA	lncRNA	1	70	2	3.65844	4.38947	5.1205	0.0416463	0.00554418	0.136301	0.0456911
chr9	69134201	69134301	4164385	0	+	0.48	(0.45,0.485]	chr9	395756	107	INTRON	INTRON	TJP2	ENSG00000119139.21	ENST00000643713.1:ENST00000606364.5:ENST00000648087.1:ENST00000423935.6:ENST00000647986.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	129	2	3.09688	4.389215	5.68155	0.0228705	0.00241241	0.102982	0.0261086
chr21	42908563	42908663	7622692	0	+	0.48	(0.45,0.485]	chr21	796494	3	SS3_PROX	SS3_PROX:INTRON	NDUFV3	ENSG00000160194.18	ENST00000460259.1:ENST00000340344.4:ENST00000354250.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	88	2	2.53391	4.389065	6.24422	0.0985287	5.58345e-4	0.193064	0.00944382
chr9	129497573	129497668	4250751	0	+	0.642105	(0.58,1]	chr9	404722	1	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	117	2	2.63329	4.38878	6.14427	0.00829614	0.00407804	0.0597702	0.0413652
chr20	348299	348392	7414000	0	+	0.462366	(0.45,0.485]	chr20	772225	1	UTR5	UTR5:EXON_MRNA:INTRON	NRSN2	ENSG00000125841.13	ENST00000609179.5:ENST00000492242.5:ENST00000382291.7:ENST00000609504.5:ENST00000382285.7:ENST00000608467.5:ENST00000470439.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	75	2	3.88066	4.388755	4.89685	0.0614781	0.00346544	0.158506	0.0335664
chr16	85453109	85453209	6517602	0	+	0.56	(0.523,0.58]	chr16	646391	938	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	2.92656	4.3887149999999995	5.85087	0.0289226	0.0132767	0.124	0.0787251
chr17	17697642	17697742	6689011	0	+	0.5	(0.485,0.523]	chr17	671338	127	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	2	93	2	2.81013	4.38865	5.96717	0.0154038	0.0108319	0.0869771	0.0707085
chr21	44872156	44872254	7678564	0	-	0.459184	(0.45,0.485]	chr21	802773	62	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	652	2	3.69887	4.38864	5.07841	9.3794e-4	3.48911e-4	0.0135546	0.0106878
chr2	55023887	55023987	1148266	0	-	0.4	(0.39,0.419]	chr2	125466	95	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.49059	4.38851	5.28643	0.041475	0.00994485	0.136301	0.0666719
chr6	128302854	128302954	3254991	0	-	0.47	(0.45,0.485]	chr6	315203	599	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000531050.5:ENST00000524534.5:ENST00000490332.2:ENST00000495748.5:ENST00000429595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	257	2	3.59189	4.3882449999999995	5.1846	0.00961186	9.0128e-5	0.0659937	0.00252994
chr1	214006069	214006168	339539	0	+	0.414141	(0.39,0.419]	chr1	38103	4	INTRON	INTRON	PROX1	ENSG00000117707.16	ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.14029	4.38807	5.63585	0.025023	0.0211243	0.10758	0.103778
chr18	58125345	58125445	7072263	0	+	0.54	(0.523,0.58]	chr18	721123	248	INTRON	INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5:ENST00000588516.5:ENST00000456986.5:ENST00000675502.1:ENST00000675554.1:ENST00000675137.1:ENST00000587547.1:ENST00000675227.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	84	2	3.0773	4.38782	5.69834	0.0438724	0.00194036	0.139792	0.0225083
chrX	2426303	2426403	7968109	0	-	0.43	(0.419,0.45]	chrX	834374	6	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	33	2	4.08324	4.386785	4.69033	0.0958674	0.0727147	0.199502	0.189038
chr2	160466026	160466126	1293211	0	-	0.28	[0,0.29]	chr2	138809	332	INTRON	INTRON	RBMS1	ENSG00000153250.21	ENST00000348849.8:ENST00000474820.5:ENST00000491781.5:ENST00000477486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	69	2	3.77403	4.386635	4.99924	0.0347661	0.00383316	0.126529	0.0358643
chr14	89336254	89336354	6027465	0	-	0.51	(0.485,0.523]	chr14	591456	26	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	336	2	4.19309	4.38662	4.58015	0.00277883	1.20666e-4	0.0333684	0.00316054
chr1	44812277	44812357	115025	0	+	0.5875	(0.58,1]	chr1	14295	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BTBD19	ENSG00000222009.9	ENST00000450269.6:ENST00000409335.6:ENST00000439563.2:ENST00000485668.5:ENST00000482715.5:ENST00000475105.5:ENST00000495433.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	66	2	3.03676	4.3863900000000005	5.73602	0.0198789	0.00904546	0.100864	0.0637469
chr11	70593029	70593129	5060203	0	-	0.6	(0.58,1]	chr11	492663	897	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	66	2	3.03676	4.3863900000000005	5.73602	0.0198789	0.00904546	0.100864	0.0637469
chr6	106246451	106246550	3219766	0	-	0.292929	(0.29,0.33]	chr6	312361	285	INTRON	INTRON	ATG5	ENSG00000057663.16	ENST00000636437.1:ENST00000636335.1:ENST00000369070.5:ENST00000369076.8:ENST00000635758.2:ENST00000360666.6:ENST00000343245.7:ENST00000646025.1:ENST00000613993.1:ENST00000476518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	69	2	3.37208	4.386295	5.40051	0.0252356	0.0113763	0.108065	0.0721226
chr7	130909316	130909416	3711069	0	-	0.57	(0.523,0.58]	chr7	356708	246	INTRON	INTRON	ENSG00000226380	ENSG00000226380.9	ENST00000432045.6:ENST00000447307.5:ENST00000418546.1	lncRNA	lncRNA	lncRNA	lncRNA	6	154	2	2.27582	4.3862	6.49658	0.0169639	0.00424382	0.0923809	0.0422099
chr15	40106304	40106376	6235219	0	-	0.541667	(0.523,0.58]	chr15	613042	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BMF	ENSG00000104081.14	ENST00000354670.9:ENST00000397573.5:ENST00000561360.5:ENST00000561282.5:ENST00000558774.5:ENST00000559701.5:ENST00000557870.1:ENST00000560430.1	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	3.19317	4.385985	5.5788	0.0366207	0.00262418	0.128697	0.0278348
chr15	67102822	67102922	6139446	0	+	0.53	(0.523,0.58]	chr15	603944	34	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1:ENST00000559092.1:ENST00000560175.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	85	2	3.19317	4.385985	5.5788	0.0366207	0.00262418	0.128697	0.0278348
chr1	30934142	30934242	434615	0	-	0.43	(0.419,0.45]	chr1	51446	4	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000530669.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	435	2	3.11077	4.385815	5.66086	0.0139236	3.34728e-5	0.0805916	0.00122396
chr9	134335342	134335442	4260776	0	+	0.49	(0.485,0.523]	chr9	406311	83	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	77	2	2.67159	4.385815	6.10004	0.0478226	0.00860355	0.1588	0.0623467
chr13	113349649	113349749	5753429	0	-	0.64	(0.58,1]	chr13	564102	43	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.25332	4.385725	5.51813	0.013519	0.0120565	0.0792526	0.0754623
chr17	2616354	2616453	6666666	0	+	0.494949	(0.485,0.523]	chr17	667911	21	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000576586.5:ENST00000397195.10:ENST00000676201.1:ENST00000575477.5:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000570400.1:ENST00000571289.1:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	114	2	2.48786	4.385525	6.28319	0.0579645	4.20832e-4	0.154685	0.00773187
chr20	36858873	36858973	7557090	0	-	0.53	(0.523,0.58]	chr20	789155	191	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	2.98158	4.38541	5.78924	0.0258432	0.0147166	0.116361	0.0826843
chr11	68351512	68351610	4882473	0	+	0.693878	(0.58,1]	chr11	470548	29	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	85	2	3.68546	4.385400000000001	5.08534	0.0116759	0.00549379	0.0735761	0.0454065
chr22	19422723	19422822	7763483	0	-	0.565657	(0.523,0.58]	chr22	813787	116	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	69	2	3.55341	4.38534	5.21727	0.0361597	0.00716661	0.127853	0.0541871
chr1	228144752	228144852	358032	0	+	0.61	(0.58,1]	chr1	40403	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5:ENST00000366718.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	107	2	2.94094	4.38529	5.82964	0.0214386	7.58111e-4	0.100405	0.0117078
chr11	115500274	115500373	5131093	0	-	0.313131	(0.29,0.33]	chr11	498122	541	INTRON	INTRON	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000541434.5:ENST00000543249.1:ENST00000540951.1:ENST00000536781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	69	2	3.4119	4.385185	5.35847	0.0269557	0.0103834	0.112113	0.0682598
chr6	519880	519980	3077339	0	-	0.66	(0.58,1]	chr6	299297	198	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	2	86	2	3.25213	4.38513	5.51813	0.013519	0.00405239	0.0792526	0.0371518
chr12	108645506	108645606	5492568	0	-	0.3	(0.29,0.33]	chr12	540315	5	UTR3	UTR3:EXON_MRNA	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6	protein_coding	protein_coding	protein_coding	protein_coding	3	112	2	2.79561	4.384824999999999	5.97404	0.00985067	0.0096909	0.0664239	0.0661757
chr8	133258165	133258265	4083879	0	-	0.45	(0.419,0.45]	chr8	388267	4	SS5_PROX	SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000517331.5:ENST00000522377.5:ENST00000676444.1:ENST00000676222.1:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	238	2	3.61724	4.38469	5.15214	0.0109324	0.00811845	0.0706366	0.0602929
chr20	21238884	21238983	7448904	0	+	0.545455	(0.523,0.58]	chr20	775009	57	INTRON	INTRON	KIZ	ENSG00000088970.16	ENST00000619574.4:ENST00000620891.4:ENST00000611685.4:ENST00000616848.4:ENST00000619189.5:ENST00000616679.4:ENST00000619179.4:ENST00000621366.1:ENST00000451772.5:ENST00000419359.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	99	2	2.39285	4.384425	6.376	0.0376513	0.00529293	0.140049	0.047841
chr1	27488685	27488785	431238	0	-	0.46	(0.45,0.485]	chr1	50973	594	INTRON	INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.42543	4.38422	5.34301	0.0328801	0.0103881	0.122593	0.0682598
chr4	9817326	9817426	2192965	0	-	0.4	(0.39,0.419]	chr4	222217	177	INTRON	INTRON	SLC2A9	ENSG00000109667.12	ENST00000508585.5:ENST00000503803.5:ENST00000512342.5:ENST00000503280.5	protein_coding	processed_transcript	protein_coding	processed_transcript	2	121	2	2.52253	4.38408	6.24563	0.0612884	7.69256e-4	0.158506	0.0118331
chr10	92690347	92690447	4550904	0	+	0.79	(0.58,1]	chr10	434372	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HHEX	ENSG00000152804.11	ENST00000282728.10:ENST00000551454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	82	2	3.56577	4.384	5.20223	0.0146864	0.00411607	0.0826843	0.0374453
chrX	133863464	133863564	8114802	0	-	0.41	(0.39,0.419]	chrX	845529	285	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	101	2	3.27682	4.38385	5.49088	0.0309972	0.0059921	0.119758	0.0482222
chr21	44871860	44871959	7678561	0	-	0.494949	(0.485,0.523]	chr21	802773	59	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	651	2	4.01727	4.383319999999999	4.74937	0.00137768	2.8864e-4	0.0226729	0.00590733
chr6	16396665	16396765	3100799	0	-	0.52	(0.485,0.523]	chr6	300842	678	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.07448	4.38324	5.692	0.0214987	0.0171772	0.10537	0.0895975
chr2	54562885	54562985	799343	0	+	0.39	(0.36,0.39]	chr2	90800	36	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7:ENST00000333896.5	protein_coding	protein_coding	protein_coding	protein_coding	3	119	2	2.87673	4.383175	5.88962	0.0166261	0.00932223	0.0884836	0.0644638
chr10	114434675	114434774	4762110	0	-	0.50505	(0.485,0.523]	chr10	455500	37	UTR3	UTR3:EXON_MRNA	ABLIM1	ENSG00000099204.21	ENST00000533213.7:ENST00000392955.7:ENST00000392952.7	protein_coding	protein_coding	protein_coding	protein_coding	1	84	2	3.10938	4.382695	5.65601	0.0416572	0.00224147	0.136301	0.024843
chr16	85231965	85232065	6515388	0	+	0.67	(0.58,1]	chr16	646377	42	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	70	2	2.78186	4.3825400000000005	5.98322	0.0342923	0.00562007	0.13449	0.0493906
chr7	112205001	112205101	3692558	0	-	0.51	(0.485,0.523]	chr7	354969	2005	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	111	2	2.61433	4.382135	6.14994	0.0149125	0.00788098	0.0848464	0.059464500000000003
chr2	148071169	148071269	913867	0	+	0.25	[0,0.29]	chr2	102540	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000473478.5:ENST00000635796.1:ENST00000637997.1:ENST00000470063.5:ENST00000638043.2:ENST00000638090.1:ENST00000637445.1:ENST00000636620.1:ENST00000478804.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.14609	4.3817900000000005	4.61749	0.061376	0.0482299	0.159496	0.158506
chr6	63641772	63641871	2934320	0	+	0.464646	(0.45,0.485]	chr6	288790	46	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	70	2	3.22036	4.38111	5.54186	0.0243502	0.016408	0.106588	0.0911382
chr4	23776176	23776275	2208448	0	-	0.373737	(0.36,0.39]	chr4	223243	106	INTRON	INTRON	PPARGC1A	ENSG00000109819.9	ENST00000509702.5	protein_coding	processed_transcript	protein_coding	processed_transcript	0	32	2	4.20082	4.38079	4.56076	0.103289	0.0581116	0.197541	0.175217
chr6	36067004	36067103	2904691	0	+	0.333333	(0.33,0.36]	chr6	284907	73	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000622903.4:ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5:ENST00000472333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	71	2	3.42056	4.3806899999999995	5.34082	0.0338211	0.0110831	0.124319	0.071519
chrX	48464254	48464351	8040330	0	-	0.381443	(0.36,0.39]	chrX	838611	9	INTRON	INTRON	SLC38A5	ENSG00000017483.16	ENST00000595796.5:ENST00000619100.4:ENST00000620913.5:ENST00000497336.1:ENST00000494034.5:ENST00000440085.5:ENST00000441948.5:ENST00000413668.5:ENST00000416711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	79	2	3.9354	4.38056	4.82572	0.0751666	0.00347533	0.172839	0.0336331
chr11	70536030	70536130	5059633	0	-	0.71	(0.58,1]	chr11	492663	327	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	65	2	3.09402	4.3805	5.66698	0.0174733	0.0102927	0.0928044	0.0684871
chr1	30934542	30934642	434619	0	-	0.46	(0.45,0.485]	chr1	51446	8	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000530669.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	94	2	2.83043	4.380385	5.93034	0.0153861	0.0130794	0.0869771	0.0782396
chr4	1326931	1327028	1995308	0	+	0.670103	(0.58,1]	chr4	203264	30	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	64	2	3.64686	4.380205	5.11355	0.0271806	0.00447535	0.112113	0.0398484
chr4	151276544	151276644	2352049	0	-	0.5	(0.485,0.523]	chr4	235111	104	INTRON	INTRON	SH3D19	ENSG00000109686.19	ENST00000604030.7	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	2.97038	4.380025	5.78967	0.0267011	0.0146211	0.118343	0.0826064
chr2	232901261	232901361	1383851	0	-	0.63	(0.58,1]	chr2	147954	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000416114.3:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	76	2	2.79178	4.3799600000000005	5.96814	0.0565563	5.06433e-4	0.154343	0.00881473
chr11	96065299	96065399	5110788	0	-	0.41	(0.39,0.419]	chr11	496560	732	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6:ENST00000618849.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.20027	4.379849999999999	4.55943	0.104562	0.0583327	0.19835	0.175217
chr19	6439413	6439506	7322211	0	-	0.397849	(0.39,0.419]	chr19	756287	2	INTRON	INTRON	SLC25A23	ENSG00000125648.15	ENST00000595810.5:ENST00000598704.5:ENST00000264088.8:ENST00000598908.5:ENST00000601322.5:ENST00000601760.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.20027	4.379849999999999	4.55943	0.104562	0.0583327	0.19835	0.175217
chr4	84904201	84904301	2274220	0	-	0.4	(0.39,0.419]	chr4	229367	68	INTRON	INTRON	WDFY3	ENSG00000163625.16	ENST00000295888.9:ENST00000509172.1:ENST00000502713.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.20027	4.379849999999999	4.55943	0.104562	0.0583327	0.19835	0.175217
chr5	113562179	113562278	2508725	0	+	0.414141	(0.39,0.419]	chr5	249478	6	INTRON	INTRON	YTHDC2	ENSG00000047188.16	ENST00000161863.9	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.20027	4.379849999999999	4.55943	0.104562	0.0583327	0.19835	0.175217
chr7	47355717	47355816	3587348	0	-	0.40404	(0.39,0.419]	chr7	346030	90	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.20027	4.379849999999999	4.55943	0.104562	0.0583327	0.19835	0.175217
chr8	108457814	108457913	3902465	0	+	0.40404	(0.39,0.419]	chr8	372963	15	INTRON	INTRON	EMC2	ENSG00000104412.8	ENST00000220853.8:ENST00000517784.5:ENST00000519642.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	32	2	4.20027	4.379849999999999	4.55943	0.104562	0.0583327	0.19835	0.175217
chr16	81681517	81681616	6510126	0	+	0.626263	(0.58,1]	chr16	645979	25	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.20215	4.37948	5.55681	0.0136092	0.0126042	0.0811697	0.0761905
chr17	40349925	40350025	6734459	0	+	0.6	(0.58,1]	chr17	677352	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RARA	ENSG00000131759.18	ENST00000254066.10:ENST00000394089.6:ENST00000425707.7:ENST00000394086.7:ENST00000394081.7:ENST00000475125.1	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.20215	4.37948	5.55681	0.0136092	0.0126042	0.0811697	0.0761905
chr9	134338835	134338935	4260811	0	+	0.69	(0.58,1]	chr9	406311	118	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	76	2	3.16566	4.37945	5.59324	0.0304114	0.0014734	0.11845	0.0185589
chr3	66036395	66036495	1815846	0	-	0.4	(0.39,0.419]	chr3	187318	273	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	72	2	3.30655	4.379395	5.45224	0.032783	0.0148983	0.122593	0.0847741
chr12	23724295	23724395	5386259	0	-	0.34	(0.33,0.36]	chr12	528148	584	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000537393.5:ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000535530.5:ENST00000536629.5:ENST00000536911.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	99	2	3.29499	4.379185	5.46338	0.0281891	0.00540177	0.114124	0.0451706
chr12	26648993	26649092	5399734	0	-	0.252525	[0,0.29]	chr12	528625	166	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	3	107	2	2.57053	4.3790000000000004	6.18747	0.0155005	0.00413423	0.087208	0.0415963
chr16	81672270	81672370	6510032	0	+	0.48	(0.45,0.485]	chr16	645972	2	SS5_PROX	SS5_PROX:INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.11446	4.37896	4.64346	0.0850039	0.0592571	0.181766	0.176157
chr16	85509885	85509985	6518170	0	+	0.46	(0.45,0.485]	chr16	646391	1506	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.11446	4.37896	4.64346	0.0850039	0.0592571	0.181766	0.176157
chr22	46650115	46650214	7744679	0	+	0.464646	(0.45,0.485]	chr22	812052	118	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.11446	4.37896	4.64346	0.0850039	0.0592571	0.181766	0.176157
chr3	11566115	11566214	1683994	0	-	0.454545	(0.45,0.485]	chr3	176062	7	INTRON	INTRON	VGLL4	ENSG00000144560.16	ENST00000430365.7:ENST00000273038.7:ENST00000413604.5:ENST00000451674.6:ENST00000424529.6:ENST00000426568.5:ENST00000445411.5:ENST00000418000.5:ENST00000458499.5:ENST00000417206.6:ENST00000417466.5:ENST00000424709.5:ENST00000419541.4:ENST00000437722.1	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.11446	4.37896	4.64346	0.0850039	0.0592571	0.181766	0.176157
chr6	2491165	2491265	2826854	0	+	0.47	(0.45,0.485]	chr6	277337	17	INTRON	INTRON	GMDS-DT	ENSG00000250903.10	ENST00000659523.1	lncRNA	lncRNA	lncRNA	lncRNA	0	32	2	4.11446	4.37896	4.64346	0.0850039	0.0592571	0.181766	0.176157
chr7	157231522	157231619	3521297	0	+	0.453608	(0.45,0.485]	chr7	340079	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	UBE3C	ENSG00000009335.18	ENST00000348165.10:ENST00000470408.5:ENST00000497368.1:ENST00000494532.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	32	2	4.11446	4.37896	4.64346	0.0850039	0.0592571	0.181766	0.176157
chr2	179258682	179258781	1328348	0	-	0.40404	(0.39,0.419]	chr2	141710	665	INTRON	INTRON	SESTD1	ENSG00000187231.14	ENST00000428443.8:ENST00000440010.5:ENST00000435047.5:ENST00000452991.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	204	2	4.36902	4.378925	4.38883	0.00580971	0.00115295	0.0503279	0.0157112
chr1	40374404	40374485	100233	0	+	0.617284	(0.58,1]	chr1	11923	2	SS5_PROX	SS5_PROX:INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8	protein_coding	protein_coding	protein_coding	protein_coding	2	162	2	4.35371	4.378665	4.40362	0.00298077	5.10596e-4	0.0347875	0.00886422
chr17	50724564	50724664	6753414	0	+	0.32	(0.29,0.33]	chr17	681212	2	INTRON	INTRON	LUC7L3	ENSG00000108848.16	ENST00000625349.2:ENST00000508045.5:ENST00000508218.5:ENST00000509335.5:ENST00000506686.5:ENST00000393227.6:ENST00000504563.6:ENST00000505658.6:ENST00000240304.5:ENST00000508482.5:ENST00000505619.5:ENST00000510984.5:ENST00000507200.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	86	2	3.36346	4.3784	5.39334	0.026605	0.00448059	0.111446	0.0398484
chr16	23389869	23389952	6567874	0	-	0.566265	(0.523,0.58]	chr16	655262	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	COG7	ENSG00000168434.13	ENST00000307149.10:ENST00000566364.1:ENST00000561854.1:ENST00000569635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	76	2	2.68276	4.37838	6.074	0.0464998	0.00906277	0.156036	0.0637469
chr5	55401409	55401506	2422538	0	+	0.319588	(0.29,0.33]	chr5	241608	6	INTRON	INTRON	MTREX	ENSG00000039123.16	ENST00000230640.10:ENST00000506750.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	70	2	3.05751	4.378175	5.69884	0.0226356	0.0155382	0.108193	0.0849828
chr15	63581250	63581350	6129478	0	+	0.3	(0.29,0.33]	chr15	603006	65	INTRON	INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000558157.5:ENST00000559873.5:ENST00000559192.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6:ENST00000559711.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	82	2	2.9213	4.378035	5.83477	0.0537281	0.00150459	0.150759	0.0188758
chr10	131957154	131957253	4616599	0	+	0.636364	(0.58,1]	chr10	441116	13	UTR3	UTR3:EXON_MRNA	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000470416.5:ENST00000649083.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	173	2	4.10248	4.377689999999999	4.6529	0.00155479	0.0012583	0.0243306	0.0167083
chr10	73028269	73028369	4712213	0	-	0.39	(0.36,0.39]	chr10	449080	110	INTRON	INTRON	P4HA1	ENSG00000122884.13	ENST00000394890.7:ENST00000307116.6:ENST00000373008.6:ENST00000440381.5:ENST00000263556.3	protein_coding	protein_coding	protein_coding	protein_coding	1	111	2	3.89235	4.37742	4.86249	0.0181775	0.0135325	0.0955836	0.0793001
chr9	104909862	104909961	4362243	0	-	0.434343	(0.419,0.45]	chr9	416432	57	INTRON	INTRON	ABCA1	ENSG00000165029.17	ENST00000374736.8:ENST00000678995.1:ENST00000423487.6:ENST00000374733.1	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.39073	4.37734	5.36395	0.0407485	0.0128682	0.135868	0.0778066
chr16	52489828	52489928	6589287	0	-	0.41	(0.39,0.419]	chr16	658702	138	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	97	2	2.92533	4.377255	5.82918	0.0186329	0.0136122	0.0932878	0.0811697
chr2	134193640	134193740	896167	0	+	0.46	(0.45,0.485]	chr2	101196	661	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	193	2	4.37217	4.37723	4.38229	0.00500791	9.45601e-4	0.0464177	0.0136002
chr10	28558735	28558834	4469672	0	+	0.40404	(0.39,0.419]	chr10	427649	203	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	72	2	3.22582	4.377165	5.52851	0.029339	0.0176855	0.116079	0.093839
chr1	150009847	150009947	585365	0	-	0.44	(0.419,0.45]	chr1	67589	319	INTRON	INTRON	OTUD7B	ENSG00000264522.6	ENST00000581312.6:ENST00000417191.2	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.1968	4.377095	5.55739	0.0310506	0.0193853	0.119758	0.0994526
chr6	147742154	147742254	3029590	0	+	0.43	(0.419,0.45]	chr6	295875	47	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	1	73	2	3.1968	4.377095	5.55739	0.0310506	0.0193853	0.119758	0.0994526
chr6	36096066	36096165	2904991	0	+	0.464646	(0.45,0.485]	chr6	284939	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	70	2	3.1756	4.37707	5.57854	0.0230065	0.0180699	0.102982	0.0953579
chr13	113613249	113613348	5659133	0	+	0.525253	(0.523,0.58]	chr13	555781	18	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	72	2	3.84801	4.376505	4.905	0.0563605	0.00343547	0.154188	0.0333396
chr11	17863465	17863565	5013865	0	-	0.44	(0.419,0.45]	chr11	484590	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528369.5:ENST00000531926.5:ENST00000531299.5:ENST00000528200.5:ENST00000529440.5:ENST00000524589.5:ENST00000529151.5:ENST00000532546.5:ENST00000525920.5:ENST00000532265.5:ENST00000533241.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	95	2	3.35317	4.376255	5.39934	0.0344362	0.00646489	0.126025	0.0503748
chr7	107976766	107976864	3677386	0	-	0.459184	(0.45,0.485]	chr7	354436	5	INTRON	INTRON	LAMB1	ENSG00000091136.15	ENST00000676574.1:ENST00000678892.1:ENST00000677144.1:ENST00000677793.1:ENST00000677588.1:ENST00000678704.1:ENST00000677101.1:ENST00000222399.11:ENST00000677485.1:ENST00000679200.1:ENST00000393561.6:ENST00000677801.1:ENST00000678698.1:ENST00000676777.1:ENST00000678232.1:ENST00000677652.1:ENST00000678346.1:ENST00000679173.1:ENST00000679244.1:ENST00000676920.1:ENST00000678266.1:ENST00000677994.1:ENST00000677734.1:ENST00000393560.5:ENST00000439976.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	95	2	3.17326	4.3759	5.57854	0.0230065	0.00683957	0.102982	0.0525976
chr7	1063993	1064093	3526867	0	-	0.54	(0.523,0.58]	chr7	340585	88	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	68	2	3.4003	4.37577	5.35124	0.0295772	0.0103016	0.116079	0.0678983
chr19	19503695	19503791	7227735	0	+	0.40625	(0.39,0.419]	chr19	739895	8	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000360315.7:ENST00000609040.5:ENST00000683918.1:ENST00000404158.5:ENST00000358713.7:ENST00000418032.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	88	2	2.69557	4.37563	6.05569	0.0837871	0.0012512	0.181557	0.0166412
chr14	54790930	54791030	5821706	0	+	0.39	(0.36,0.39]	chr14	569165	21	UTR3	UTR3:EXON_MRNA	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	3.05499	4.375365	5.69574	0.0505441	0.00299965	0.148456	0.030427
chr7	47394600	47394700	3587738	0	-	0.41	(0.39,0.419]	chr7	346036	246	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	88	2	3.01865	4.3752949999999995	5.73194	0.0536576	0.00276973	0.150594	0.0286873
chr16	89434621	89434721	6661180	0	-	0.5	(0.485,0.523]	chr16	666753	29	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	114	2	2.27698	4.375245	6.47351	0.0793007	2.44978e-4	0.176433	0.00523316
chr6	169650261	169650358	3304366	0	-	0.587629	(0.58,1]	chr6	319869	6	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	77	2	3.29173	4.3752249999999995	5.45872	0.0243429	0.00211999	0.106588	0.0239744
chr13	113047440	113047539	5656109	0	+	0.565657	(0.523,0.58]	chr13	555180	2	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	72	2	2.86937	4.375045	5.88072	0.0324455	0.0126258	0.130548	0.0761905
chr3	32819232	32819332	1438884	0	+	0.57	(0.523,0.58]	chr3	153400	3	SS5_PROX	SS5_PROX:INTRON	TRIM71	ENSG00000206557.6	ENST00000383763.6	protein_coding	protein_coding	protein_coding	protein_coding	2	116	2	2.77353	4.374665	5.9758	0.0370229	9.36996e-4	0.129768	0.0135546
chr1	160995704	160995803	606118	0	-	0.484848	(0.45,0.485]	chr1	72014	6	UTR3	UTR3:EXON_MRNA	F11R	ENSG00000158769.18	ENST00000621309.4:ENST00000368026.11	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	3.03233	4.37446	5.71659	0.0244076	0.018513	0.113311	0.0928429
chr2	239337392	239337491	1392084	0	-	0.464646	(0.45,0.485]	chr2	148752	129	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	71	2	3.03233	4.37446	5.71659	0.0244076	0.018513	0.113311	0.0928429
chr9	38064428	38064528	4303732	0	-	0.41	(0.39,0.419]	chr9	411616	479	INTRON	INTRON	SHB	ENSG00000107338.10	ENST00000377707.4	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	3.18369	4.374435	5.56518	0.027797	0.0193131	0.112962	0.0994526
chr2	158639236	158639335	936798	0	+	0.414141	(0.39,0.419]	chr2	103450	46	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000452162.5:ENST00000421462.5:ENST00000494945.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	89	2	3.13002	4.37437	5.61872	0.0456475	0.00361685	0.142336	0.0342681
chr2	160465527	160465626	1293206	0	-	0.434343	(0.419,0.45]	chr2	138809	327	INTRON	INTRON	RBMS1	ENSG00000153250.21	ENST00000348849.8:ENST00000474820.5:ENST00000491781.5:ENST00000477486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	74	2	3.02039	4.374165	5.72794	0.0276403	0.0242188	0.120359	0.106588
chr19	944613	944713	7185292	0	+	0.58	(0.523,0.58]	chr19	730741	115	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	347	2	4.29673	4.3740950000000005	4.45146	0.00166906	2.76649e-4	0.0252923	0.00574529
chr7	47380512	47380612	3587597	0	-	0.52	(0.485,0.523]	chr7	346036	105	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	69	2	3.57804	4.37408	5.17012	0.038581	0.00685872	0.131324	0.0526888
chr16	31757783	31757881	6441096	0	+	0.346939	(0.33,0.36]	chr16	638752	22	UTR3	UTR3:EXON_MRNA:INTRON	KRBOX5	ENSG00000197302.11	ENST00000539915.5:ENST00000316491.14:ENST00000529515.2:ENST00000534277.5:ENST00000531864.6:ENST00000689850.1:ENST00000534369.1:ENST00000542684.5:ENST00000544044.1:ENST00000692451.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	351	2	3.76715	4.373305	4.97946	0.00165954	5.79609e-4	0.0252035	0.00967625
chr1	43564903	43565003	107088	0	+	0.6	(0.58,1]	chr1	13192	106	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	80	2	3.48889	4.3731	5.25731	0.016972	0.00358178	0.0889149	0.0342681
chr7	47359401	47359500	3587385	0	-	0.424242	(0.419,0.45]	chr7	346030	127	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	89	2	2.88408	4.37296	5.86184	0.0674152	0.00223565	0.163486	0.024843
chr11	70811068	70811168	5062394	0	-	0.61	(0.58,1]	chr11	492713	35	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	75	2	2.9908	4.37293	5.75506	0.0409591	9.38062e-4	0.136191	0.0135546
chr1	855749	855849	665	0	+	0.53	(0.523,0.58]	chr1	92	31	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC01128	ENSG00000228794.11	ENST00000445118.7:ENST00000670780.1:ENST00000659124.2:ENST00000688309.1:ENST00000666741.1:ENST00000685764.1:ENST00000657837.1:ENST00000691316.1	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	4.23973	4.37283	4.50593	0.094303	0.0444247	0.188571	0.153511
chr1	35886433	35886533	89522	0	+	0.53	(0.523,0.58]	chr1	10417	26	INTRON	INTRON	AGO1	ENSG00000092847.13	ENST00000373206.5:ENST00000373204.6:ENST00000674426.1:ENST00000674304.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.23973	4.37283	4.50593	0.094303	0.0444247	0.188571	0.153511
chr1	160997485	160997584	606136	0	-	0.565657	(0.523,0.58]	chr1	72014	24	UTR3	UTR3:EXON_MRNA	F11R	ENSG00000158769.18	ENST00000621309.4:ENST00000368026.11	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.23973	4.37283	4.50593	0.094303	0.0444247	0.188571	0.153511
chr10	72473503	72473602	4710236	0	-	0.565657	(0.523,0.58]	chr10	448943	3	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000476605.7:ENST00000642044.1:ENST00000635239.1:ENST00000418483.6:ENST00000398763.8:ENST00000489666.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.23973	4.37283	4.50593	0.094303	0.0444247	0.188571	0.153511
chr10	103713986	103714086	4757240	0	-	0.57	(0.523,0.58]	chr10	454791	205	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.23973	4.37283	4.50593	0.094303	0.0444247	0.188571	0.153511
chr10	132552959	132553059	4616990	0	+	0.54	(0.523,0.58]	chr10	441139	144	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.23973	4.37283	4.50593	0.094303	0.0444247	0.188571	0.153511
chr16	67916674	67916773	6473565	0	+	0.545455	(0.523,0.58]	chr16	642897	66	INTRON	INTRON	PSKH1	ENSG00000159792.10	ENST00000291041.6	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.23973	4.37283	4.50593	0.094303	0.0444247	0.188571	0.153511
chr16	85395333	85395433	6517024	0	+	0.58	(0.523,0.58]	chr16	646391	360	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.23973	4.37283	4.50593	0.094303	0.0444247	0.188571	0.153511
chr3	39148404	39148502	1739973	0	-	0.571429	(0.523,0.58]	chr3	180188	13	INTRON	INTRON	CSRNP1	ENSG00000144655.15	ENST00000273153.10:ENST00000514182.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.23973	4.37283	4.50593	0.094303	0.0444247	0.188571	0.153511
chr3	53798274	53798373	1479501	0	+	0.545455	(0.523,0.58]	chr3	159002	15	INTRON	INTRON	CACNA1D	ENSG00000157388.20	ENST00000637424.1:ENST00000288139.11:ENST00000350061.11:ENST00000422281.7:ENST00000636570.1:ENST00000481478.1:ENST00000636448.1:ENST00000636633.2:ENST00000637589.2:ENST00000636629.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.23973	4.37283	4.50593	0.094303	0.0444247	0.188571	0.153511
chr8	143516785	143516885	4096761	0	-	0.55	(0.523,0.58]	chr8	389278	85	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.23973	4.37283	4.50593	0.094303	0.0444247	0.188571	0.153511
chr6	7573122	7573215	2840180	0	+	0.344086	(0.33,0.36]	chr6	278167	7	INTRON	INTRON	DSP	ENSG00000096696.15	ENST00000418664.2:ENST00000379802.8:ENST00000684395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	71	2	3.13306	4.372585	5.61211	0.022456	0.0206439	0.102751	0.102713
chr6	100856592	100856688	3213525	0	-	0.46875	(0.45,0.485]	chr6	312007	4	UTR3	UTR3:EXON_MRNA:INTRON	ASCC3	ENSG00000112249.14	ENST00000369162.7:ENST00000324696.8:ENST00000522650.5:ENST00000468245.2:ENST00000324723.10:ENST00000369143.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	70	2	3.53579	4.372425	5.20906	0.0399616	0.00804225	0.133954	0.0582806
chr19	45624119	45624218	7388937	0	-	0.373737	(0.36,0.39]	chr19	767278	2	INTRON	INTRON	EML2	ENSG00000125746.18	ENST00000589876.5:ENST00000587152.6:ENST00000245925.8:ENST00000586195.5:ENST00000588308.5:ENST00000536630.5:ENST00000590819.5:ENST00000399594.7:ENST00000590575.5:ENST00000588272.1:ENST00000588000.5:ENST00000588610.5:ENST00000588496.5:ENST00000586902.5:ENST00000590580.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	87	2	2.84128	4.372365	5.90345	0.0684007	0.00181603	0.164885	0.0215865
chr11	75485478	75485566	5080164	0	-	0.443182	(0.419,0.45]	chr11	494355	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	GDPD5	ENSG00000158555.15	ENST00000336898.8:ENST00000529721.5:ENST00000533784.5:ENST00000532435.5:ENST00000529095.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	90	2	3.05795	4.372355	5.68676	0.0529681	0.00338051	0.149208	0.0328791
chr1	155336363	155336463	595435	0	-	0.31	(0.29,0.33]	chr1	69922	12	UTR3	UTR3:EXON_MRNA	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000677042.1:ENST00000678699.1:ENST00000677825.1:ENST00000679133.1:ENST00000677992.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.2311	4.372055	4.51301	0.0885563	0.0471437	0.183874	0.156915
chr14	37257006	37257106	5783662	0	+	0.3	(0.29,0.33]	chr14	566873	87	INTRON	INTRON	MIPOL1	ENSG00000151338.20	ENST00000694961.1:ENST00000396294.6:ENST00000537471.6:ENST00000556615.5:ENST00000554114.2:ENST00000695502.1:ENST00000695405.1:ENST00000695503.1:ENST00000684589.1:ENST00000327441.11:ENST00000694962.1:ENST00000539062.6:ENST00000554930.5:ENST00000556451.5:ENST00000694963.1:ENST00000555870.5:ENST00000694964.1:ENST00000556753.5:ENST00000694965.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.2311	4.372055	4.51301	0.0885563	0.0471437	0.183874	0.156915
chr10	28560332	28560432	4469688	0	+	0.52	(0.485,0.523]	chr10	427649	219	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	113	2	2.51217	4.371785	6.2314	0.0558462	4.86354e-4	0.154188	0.00857996
chr17	806946	807046	6824890	0	-	0.66	(0.58,1]	chr17	690019	13	INTRON	INTRON	NXN	ENSG00000167693.17	ENST00000336868.8:ENST00000575801.5:ENST00000571684.5:ENST00000537628.6	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.1491	4.371785	5.59447	0.0154006	0.0117666	0.0869771	0.0737098
chr16	87747284	87747383	6656556	0	-	0.353535	(0.33,0.36]	chr16	665900	44	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	32	2	4.102	4.3716550000000005	4.64131	0.0867669	0.0642879	0.184676	0.182221
chr18	36794706	36794806	7146091	0	-	0.34	(0.33,0.36]	chr18	726936	7	UTR3	UTR3:EXON_MRNA:INTRON	TPGS2	ENSG00000134779.15	ENST00000590258.2:ENST00000590652.5:ENST00000614939.4:ENST00000587129.5:ENST00000610723.4:ENST00000590842.5:ENST00000591906.5:ENST00000587382.5:ENST00000334295.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.102	4.3716550000000005	4.64131	0.0867669	0.0642879	0.184676	0.182221
chr7	141767755	141767855	3510008	0	+	0.36	(0.33,0.36]	chr7	338351	170	INTRON	INTRON	SSBP1	ENSG00000106028.11	ENST00000465582.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.102	4.3716550000000005	4.64131	0.0867669	0.0642879	0.184676	0.182221
chr3	48425032	48425117	1766683	0	-	0.517647	(0.485,0.523]	chr3	182277	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	114	2	2.65005	4.37162	6.09319	0.045035	7.11715e-4	0.141162	0.0112082
chr1	17670489	17670589	54916	0	+	0.49	(0.485,0.523]	chr1	5603	55	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.23628	4.371309999999999	4.50634	0.0939553	0.045492200000000003	0.188571	0.154539
chr1	174832059	174832159	284741	0	+	0.5	(0.485,0.523]	chr1	32787	197	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000251507.8:ENST00000681986.1:ENST00000529145.6:ENST00000325589.9:ENST00000469553.6:ENST00000367687.5:ENST00000347255.6:ENST00000489615.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.23628	4.371309999999999	4.50634	0.0939553	0.045492200000000003	0.188571	0.154539
chr10	132553458	132553558	4616995	0	+	0.51	(0.485,0.523]	chr10	441139	149	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.23628	4.371309999999999	4.50634	0.0939553	0.045492200000000003	0.188571	0.154539
chr16	22312019	22312119	6421918	0	+	0.49	(0.485,0.523]	chr16	635159	18	INTRON	INTRON	POLR3E	ENSG00000058600.16	ENST00000615879.4:ENST00000299853.10:ENST00000564209.5:ENST00000565358.5:ENST00000418581.6:ENST00000359210.8:ENST00000563024.5:ENST00000564061.5:ENST00000564750.5:ENST00000565551.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.23628	4.371309999999999	4.50634	0.0939553	0.045492200000000003	0.188571	0.154539
chr16	29820144	29820242	6434932	0	+	0.510204	(0.485,0.523]	chr16	637001	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PAGR1:ENSG00000281348	ENSG00000280789.2:ENSG00000281348.1	ENST00000320330.8:ENST00000562285.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.23628	4.371309999999999	4.50634	0.0939553	0.045492200000000003	0.188571	0.154539
chr2	94196518	94196616	1217721	0	-	0.5	(0.485,0.523]	chr2	131129	30	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BMS1P23	ENSG00000286156.2	ENST00000690934.1:ENST00000687639.1:ENST00000686112.1:ENST00000688776.1:ENST00000688246.1:ENST00000688880.1:ENST00000686539.1:ENST00000685483.1:ENST00000689372.1:ENST00000689972.1:ENST00000651585.2:ENST00000691142.1:ENST00000693569.1:ENST00000691557.1:ENST00000688907.1:ENST00000690571.1:ENST00000690135.1:ENST00000685524.1:ENST00000688144.1:ENST00000693230.1:ENST00000651108.1:ENST00000685339.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	0	31	2	4.23628	4.371309999999999	4.50634	0.0939553	0.045492200000000003	0.188571	0.154539
chr22	23804977	23805076	7693764	0	+	0.50505	(0.485,0.523]	chr22	805261	7	INTRON	INTRON	SMARCB1	ENSG00000099956.20	ENST00000407422.8:ENST00000344921.11:ENST00000644036.2:ENST00000647057.1:ENST00000644619.1:ENST00000263121.12:ENST00000417137.6:ENST00000646723.1:ENST00000646911.1:ENST00000644462.1:ENST00000644467.1:ENST00000642275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.23628	4.371309999999999	4.50634	0.0939553	0.045492200000000003	0.188571	0.154539
chr7	74455474	74455574	3391381	0	+	0.52	(0.485,0.523]	chr7	327343	9	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.23628	4.371309999999999	4.50634	0.0939553	0.045492200000000003	0.188571	0.154539
chr7	74458170	74458270	3391408	0	+	0.5	(0.485,0.523]	chr7	327343	36	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.23628	4.371309999999999	4.50634	0.0939553	0.045492200000000003	0.188571	0.154539
chrX	65517006	65517102	8055044	0	-	0.489583	(0.485,0.523]	chrX	840752	17	INTRON	INTRON	LAS1L	ENSG00000001497.18	ENST00000677056.1:ENST00000677969.1:ENST00000374811.8:ENST00000374807.9:ENST00000677834.1:ENST00000484069.1:ENST00000374804.9:ENST00000677986.1:ENST00000677087.1:ENST00000679056.1:ENST00000679261.1:ENST00000678074.1:ENST00000678705.1:ENST00000679277.1:ENST00000677154.1:ENST00000678547.1:ENST00000678956.1:ENST00000679116.1:ENST00000678848.1:ENST00000678173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.23628	4.371309999999999	4.50634	0.0939553	0.045492200000000003	0.188571	0.154539
chr14	45090675	45090774	5806318	0	+	0.373737	(0.36,0.39]	chr14	568015	25	INTRON	INTRON	PRPF39	ENSG00000185246.18	ENST00000553605.1:ENST00000355765.11:ENST00000477626.5:ENST00000556782.5:ENST00000424478.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	73	2	3.59265	4.371115	5.14958	0.0493212	0.00786519	0.146207	0.0576321
chr2	152379201	152379301	925903	0	+	0.49	(0.485,0.523]	chr2	103058	431	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	4	126	2	2.52039	4.3710450000000005	6.2217	0.0137225	0.00693912	0.0814223	0.0553898
chr2	27315467	27315562	1111561	0	-	0.389474	(0.36,0.39]	chr2	121367	20	INTRON	INTRON	MPV17	ENSG00000115204.15	ENST00000380044.6:ENST00000402310.5:ENST00000233545.6:ENST00000357186.10:ENST00000402722.5:ENST00000426513.6:ENST00000405983.5:ENST00000405076.5:ENST00000621183.4:ENST00000415514.5:ENST00000403262.6:ENST00000617583.4:ENST00000428910.5:ENST00000621470.4:ENST00000622003.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	76	2	2.79528	4.37083	5.9463800000000004	0.0413701	0.0151971	0.148333	0.084474
chr4	94603669	94603769	2089198	0	+	0.56	(0.523,0.58]	chr4	212960	156	INTRON	INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000509357.5:ENST00000511586.5:ENST00000380176.7:ENST00000506632.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	68	2	3.229	4.370735	5.51247	0.0230387	0.0152072	0.102982	0.0861813
chr7	79310872	79310972	3625105	0	-	0.39	(0.36,0.39]	chr7	349228	3021	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000628997.1:ENST00000636424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	97	2	3.03688	4.370725	5.70457	0.022152	0.0105366	0.101784	0.0691536
chr16	31493048	31493131	6580389	0	-	0.638554	(0.58,1]	chr16	657882	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RUSF1	ENSG00000140688.17	ENST00000570164.5:ENST00000327237.7:ENST00000568491.1:ENST00000430477.6:ENST00000567994.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	78	2	3.37954	4.370535	5.36153	0.0207688	0.00273899	0.098873	0.028553
chr9	37213928	37214028	4149233	0	+	0.36	(0.33,0.36]	chr9	394662	270	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	95	2	2.99408	4.370505	5.74693	0.0181681	0.0111121	0.0921579	0.0716954
chr1	1064205	1064303	1382	0	+	0.632653	(0.58,1]	chr1	320	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:SS3_ADJ:SS3_PROX:INTRON	ENSG00000217801	ENSG00000217801.11	ENST00000688131.1:ENST00000456409.6:ENST00000692821.1:ENST00000394517.7:ENST00000427998.6:ENST00000685011.1:ENST00000692266.1:ENST00000412397.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	63	2	3.52722	4.370495	5.21377	0.0230012	0.00611467	0.102982	0.0489549
chr20	48931703	48931803	7490252	0	+	0.6	(0.58,1]	chr20	780774	93	INTRON	INTRON	ARFGEF2	ENSG00000124198.10	ENST00000371917.5:ENST00000681399.1:ENST00000679436.1:ENST00000681885.1:ENST00000681021.1:ENST00000680871.1:ENST00000681656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	63	2	3.52722	4.370495	5.21377	0.0230012	0.00611467	0.102982	0.0489549
chr21	45454322	45454422	7630806	0	+	0.65	(0.58,1]	chr21	797656	485	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	3.52722	4.370495	5.21377	0.0230012	0.00611467	0.102982	0.0489549
chr19	944513	944613	7185291	0	+	0.7	(0.58,1]	chr19	730741	114	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	221	2	3.83045	4.370445	4.91044	8.73852e-4	7.49029e-4	0.0176362	0.0116198
chr16	23134852	23134952	6567712	0	-	0.29	[0,0.29]	chr16	655250	263	INTRON	INTRON	USP31	ENSG00000103404.15	ENST00000219689.12	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.74141	4.370325	4.99924	0.0347661	0.00417019	0.126529	0.0378966
chr14	89337452	89337552	6027477	0	-	0.53	(0.523,0.58]	chr14	591456	38	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	91	2	2.9514	4.37032	5.78924	0.0147166	0.0109262	0.0826843	0.0706366
chr10	75726948	75727047	4523433	0	+	0.434343	(0.419,0.45]	chr10	432271	790	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	73	2	3.46155	4.370115	5.27868	0.0457732	0.0110249	0.142336	0.0711736
chr17	57358221	57358321	6760787	0	+	0.45	(0.419,0.45]	chr17	682104	475	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	73	2	3.46155	4.370115	5.27868	0.0457732	0.0110249	0.142336	0.0711736
chr19	34389995	34390095	7243250	0	+	0.57	(0.523,0.58]	chr19	741718	80	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	77	2	2.61478	4.36978	6.12478	0.052707	0.00829271	0.167062	0.0610772
chr1	226944479	226944579	355637	0	+	0.58	(0.523,0.58]	chr1	40145	35	INTRON	INTRON	COQ8A	ENSG00000163050.18	ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000489044.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	70	2	2.98158	4.3695	5.75742	0.0258432	0.0155135	0.116361	0.0849828
chr15	40106376	40106448	6235220	0	-	0.472222	(0.45,0.485]	chr15	613042	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BMF	ENSG00000104081.14	ENST00000354670.9:ENST00000397573.5:ENST00000561360.5:ENST00000561282.5:ENST00000558774.5:ENST00000559701.5:ENST00000557870.1:ENST00000560430.1	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	3.44977	4.369115	5.28846	0.0255605	0.00612862	0.109062	0.0489549
chr7	217657	217757	3305831	0	+	0.52	(0.485,0.523]	chr7	320161	83	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.4289	4.368635	5.30837	0.0314138	0.00977282	0.12069	0.0664239
chr20	36157591	36157691	7467916	0	+	0.51	(0.485,0.523]	chr20	777629	23	INTRON	INTRON	EPB41L1	ENSG00000088367.23	ENST00000202028.9:ENST00000432589.5:ENST00000406771.6:ENST00000430276.5:ENST00000373946.7:ENST00000441639.5:ENST00000373950.6:ENST00000628415.2:ENST00000452261.5:ENST00000447825.5:ENST00000427533.2:ENST00000338074.7:ENST00000636016.2:ENST00000373945.5	protein_coding	protein_coding	protein_coding	protein_coding	1	104	2	3.9062	4.368460000000001	4.83072	0.0148956	0.0109268	0.0847741	0.0708179
chr9	134367079	134367179	4261094	0	+	0.54	(0.523,0.58]	chr9	406311	401	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	83	2	3.0773	4.3684449999999995	5.65959	0.0438724	0.0021416	0.139792	0.0240825
chr16	20691874	20691974	6416377	0	+	0.46	(0.45,0.485]	chr16	634386	98	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	440	2	4.2327	4.368335	4.50397	0.0065939	4.01771e-5	0.0538851	0.0014005
chr20	32476528	32476627	7543633	0	-	0.414141	(0.39,0.419]	chr20	787372	14	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	75	2	2.84832	4.36829	5.88826	0.0375279	0.0169925	0.139823	0.0889149
chr17	77296994	77297093	6803320	0	+	0.383838	(0.36,0.39]	chr17	686716	17	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	87	2	2.96725	4.3678	5.76835	0.0573348	0.00252253	0.154343	0.0270357
chr10	132555057	132555157	4617011	0	+	0.59	(0.58,1]	chr10	441139	165	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	3.23007	4.36752	5.50497	0.0271644	0.00187297	0.112113	0.0219434
chr2	152658601	152658683	1284305	0	-	0.341463	(0.33,0.36]	chr2	138178	2	SS5_PROX	SS5_PROX:INTRON	PRPF40A	ENSG00000196504.20	ENST00000410080.8:ENST00000545856.8:ENST00000696382.1:ENST00000696381.1:ENST00000471701.1:ENST00000471167.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	71	2	3.52816	4.367515	5.20687	0.041040600000000003	0.00867795	0.136289	0.0612699
chr6	87160629	87160729	2950096	0	+	0.28	[0,0.29]	chr6	290360	45	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000392985.3:ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	66	2	3.18452	4.367325	5.55013	0.0159504	0.0137948	0.0893563	0.0803169
chr1	1028732	1028831	1002	0	+	0.717172	(0.58,1]	chr1	166	59	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.18518	4.3672249999999995	4.54927	0.0643046	0.0374658	0.161669	0.139793
chr1	53307279	53307379	486635	0	-	0.62	(0.58,1]	chr1	57941	108	INTRON	INTRON	LRP8	ENSG00000157193.18	ENST00000306052.12:ENST00000661457.1:ENST00000668448.1:ENST00000667377.1:ENST00000658277.1:ENST00000662198.1:ENST00000657895.1:ENST00000668071.1:ENST00000480045.6:ENST00000669432.1:ENST00000465675.6:ENST00000371454.6:ENST00000662604.1:ENST00000354412.7:ENST00000658404.1:ENST00000668991.1:ENST00000347547.7:ENST00000655704.1:ENST00000659993.1:ENST00000496580.1:ENST00000654634.1:ENST00000661359.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.18518	4.3672249999999995	4.54927	0.0643046	0.0374658	0.161669	0.139793
chr10	119442488	119442588	4595681	0	+	0.59	(0.58,1]	chr10	439226	4	SS5_PROX	SS5_PROX:INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.18518	4.3672249999999995	4.54927	0.0643046	0.0374658	0.161669	0.139793
chr11	910440	910540	4970131	0	-	0.75	(0.58,1]	chr11	480970	4	SS5_PROX	SS5_PROX:INTRON	CHID1	ENSG00000177830.18	ENST00000323578.13:ENST00000449825.5:ENST00000429789.6:ENST00000528581.5:ENST00000436108.6:ENST00000528426.5:ENST00000533056.5:ENST00000533059.5:ENST00000530939.5:ENST00000525225.1:ENST00000525840.1:ENST00000528154.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.18518	4.3672249999999995	4.54927	0.0643046	0.0374658	0.161669	0.139793
chr16	573001	573101	6368146	0	+	0.71	(0.58,1]	chr16	627954	4	SS5_PROX	SS5_PROX:INTRON	PIGQ	ENSG00000007541.17	ENST00000293874.2:ENST00000409527.6:ENST00000321878.10:ENST00000439574.1:ENST00000422307.6:ENST00000636657.1:ENST00000026218.9:ENST00000470411.2:ENST00000443147.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.18518	4.3672249999999995	4.54927	0.0643046	0.0374658	0.161669	0.139793
chr16	85382139	85382239	6516892	0	+	0.66	(0.58,1]	chr16	646391	228	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.18518	4.3672249999999995	4.54927	0.0643046	0.0374658	0.161669	0.139793
chr16	85452509	85452609	6517596	0	+	0.63	(0.58,1]	chr16	646391	932	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.18518	4.3672249999999995	4.54927	0.0643046	0.0374658	0.161669	0.139793
chr18	77120219	77120318	7181523	0	-	0.585859	(0.58,1]	chr18	730186	146	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1:ENST00000583798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.18518	4.3672249999999995	4.54927	0.0643046	0.0374658	0.161669	0.139793
chr2	3304183	3304283	1081149	0	-	0.62	(0.58,1]	chr2	117633	215	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	30	2	4.18518	4.3672249999999995	4.54927	0.0643046	0.0374658	0.161669	0.139793
chr2	10189205	10189305	718193	0	+	0.64	(0.58,1]	chr2	84002	331	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	30	2	4.18518	4.3672249999999995	4.54927	0.0643046	0.0374658	0.161669	0.139793
chr2	10194397	10194497	718245	0	+	0.59	(0.58,1]	chr2	84002	383	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	0	30	2	4.18518	4.3672249999999995	4.54927	0.0643046	0.0374658	0.161669	0.139793
chr2	234982570	234982656	1061790	0	+	0.639535	(0.58,1]	chr2	115596	5	INTRON	INTRON	SH3BP4	ENSG00000130147.16	ENST00000392011.7:ENST00000416021.5:ENST00000409212.5:ENST00000344528.8:ENST00000444916.5:ENST00000446904.5:ENST00000462602.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.18518	4.3672249999999995	4.54927	0.0643046	0.0374658	0.161669	0.139793
chr7	1063394	1063493	3526861	0	-	0.59596	(0.58,1]	chr7	340585	82	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.18518	4.3672249999999995	4.54927	0.0643046	0.0374658	0.161669	0.139793
chr7	98243066	98243166	3647999	0	-	0.59	(0.58,1]	chr7	351149	2	SS5_PROX	SS5_PROX:INTRON	TECPR1	ENSG00000205356.10	ENST00000447648.7:ENST00000471397.1:ENST00000463648.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	0	30	2	4.18518	4.3672249999999995	4.54927	0.0643046	0.0374658	0.161669	0.139793
chr4	1325470	1325568	1995293	0	+	0.438776	(0.419,0.45]	chr4	203264	15	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	74	2	3.59354	4.36702	5.1405	0.0550015	0.00820853	0.153337	0.0592025
chrX	48942006	48942105	8040895	0	-	0.575758	(0.523,0.58]	chrX	838808	53	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	68	2	3.18279	4.366455	5.55012	0.0217068	0.0168396	0.100615	0.0919482
chr4	3364593	3364692	2005082	0	+	0.717172	(0.58,1]	chr4	204663	212	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	63	2	3.56821	4.36637	5.16453	0.0249802	0.00550024	0.10758	0.0454065
chr2	3289013	3289113	1080997	0	-	0.43	(0.419,0.45]	chr2	117633	63	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	77	2	3.79893	4.365915	4.9329	0.0716557	0.00509983	0.168159	0.0433857
chr11	61273707	61273806	5041315	0	-	0.636364	(0.58,1]	chr11	488765	1	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10:ENST00000535710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	63	2	3.25332	4.365855	5.47839	0.0145198	0.0120565	0.0823104	0.0754623
chr5	133968152	133968248	2763818	0	-	0.645833	(0.58,1]	chr5	270926	3	SS5_PROX	SS5_PROX:INTRON	C5orf15	ENSG00000113583.8	ENST00000231512.5:ENST00000507191.1:ENST00000509913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	3.25332	4.365855	5.47839	0.0145198	0.0120565	0.0823104	0.0754623
chr6	31652552	31652628	3119050	0	-	0.75	(0.58,1]	chr6	303158	3	UTR5	UTR5:EXON_MRNA	BAG6	ENSG00000204463.14	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.2:ENST00000362049.10:ENST00000439687.6:ENST00000437771.5:ENST00000451898.5:ENST00000424480.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	63	2	3.25332	4.365855	5.47839	0.0145198	0.0120565	0.0823104	0.0754623
chr7	47377015	47377115	3587562	0	-	0.59	(0.58,1]	chr7	346036	70	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	3.25332	4.365855	5.47839	0.0145198	0.0120565	0.0823104	0.0754623
chr6	63543510	63543610	2933844	0	+	0.32	(0.29,0.33]	chr6	288732	106	INTRON	INTRON	PTP4A1	ENSG00000112245.13	ENST00000648894.1:ENST00000639568.2:ENST00000470661.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	104	2	3.65493	4.365845	5.07676	0.0412683	0.001877	0.136301	0.0219877
chr3	48926141	48926237	1464997	0	+	0.322917	(0.29,0.33]	chr3	156606	8	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000452882.5:ENST00000498314.5:ENST00000474618.5:ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000420814.5:ENST00000486316.5:ENST00000449729.5:ENST00000433170.5:ENST00000474936.6:ENST00000466850.1:ENST00000484999.5:ENST00000470296.5:ENST00000463204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	68	2	3.28897	4.3651599999999995	5.44135	0.0236557	0.0137233	0.105002	0.0814223
chr5	119350982	119351082	2517417	0	+	0.54	(0.523,0.58]	chr5	249997	170	INTRON	INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5:ENST00000513374.1	protein_coding	protein_coding	protein_coding	protein_coding	1	84	2	3.19317	4.36491	5.53665	0.0366207	0.00291382	0.128697	0.0298557
chr5	168415845	168415942	2588972	0	+	0.453608	(0.45,0.485]	chr5	256707	14	EXON_MRNA	EXON_MRNA:INTRON	WWC1	ENSG00000113645.15	ENST00000265293.9:ENST00000521089.5:ENST00000393895.7:ENST00000517425.5:ENST00000524228.5:ENST00000624315.1:ENST00000518334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:TEC:processed_transcript	1	69	2	3.38668	4.364845	5.34301	0.0328801	0.0113463	0.122593	0.0719708
chr3	4045371	4045471	1673604	0	-	0.43	(0.419,0.45]	chr3	175305	2175	INTRON	INTRON	SUMF1	ENSG00000144455.14	ENST00000448413.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	76	2	2.81936	4.364225	5.90909	0.0405181	0.0184411	0.145945	0.0927235
chr6	166952743	166952840	3302020	0	-	0.618557	(0.58,1]	chr6	319750	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000499370.6:ENST00000358165.7:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	525	2	2.91493	4.364095	5.81326	0.0259506	3.46486e-5	0.116361	0.00326863
chr6	158245592	158245692	3060971	0	+	0.25	[0,0.29]	chr6	297572	129	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	67	2	3.67385	4.36397	5.05409	0.0318802	0.00495574	0.12158	0.0425347
chr2	239087258	239087358	1389548	0	-	0.5	(0.485,0.523]	chr2	148610	3	SS5_PROX	SS5_PROX:INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000487617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	92	2	3.14062	4.363925	5.58723	0.0203514	0.00698603	0.0979211	0.0534814
chr20	44402453	44402553	7482938	0	+	0.5	(0.485,0.523]	chr20	779637	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000682427.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	91	2	2.96979	4.363815	5.75784	0.0154142	0.0105977	0.0849828	0.069518
chr1	183477390	183477489	301181	0	+	0.313131	(0.29,0.33]	chr1	34243	31	INTRON	INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	73	2	2.78168	4.363805	5.94593	0.0393252	0.0101801	0.143321	0.068447
chr5	139654162	139654262	2549702	0	+	0.54	(0.523,0.58]	chr5	253168	26	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	1	83	2	3.10715	4.363455	5.61976	0.0418959	0.00236826	0.136901	0.0259199
chr20	43549696	43549793	7481039	0	+	0.505155	(0.485,0.523]	chr20	779362	16	UTR3	UTR3:EXON_MRNA	L3MBTL1	ENSG00000185513.17	ENST00000649917.1:ENST00000649698.1:ENST00000422861.3:ENST00000648715.1:ENST00000647827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	260	2	3.72801	4.363105	4.9982	0.00148235	0.00135315	0.0224546	0.0186567
chr18	7783765	7783865	7007099	0	+	0.54	(0.523,0.58]	chr18	716113	91	INTRON	INTRON	PTPRM	ENSG00000173482.17	ENST00000332175.12:ENST00000580170.6:ENST00000400053.8:ENST00000400060.8	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.03457	4.36307	5.69157	0.0231444	0.0172851	0.109883	0.0897247
chr2	235507138	235507238	1062667	0	+	0.53	(0.523,0.58]	chr2	115651	119	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	69	2	3.03457	4.36307	5.69157	0.0231444	0.0172851	0.109883	0.0897247
chr2	101125349	101125448	1239837	0	-	0.393939	(0.39,0.419]	chr2	133786	155	INTRON	INTRON	TBC1D8	ENSG00000204634.13	ENST00000409318.2:ENST00000376840.8:ENST00000463469.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	96	2	2.89662	4.3629	5.82918	0.0186329	0.0145147	0.0932878	0.0836197
chr19	6692124	6692223	7322663	0	-	0.59596	(0.58,1]	chr19	756435	10	INTRON	INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000695653.1:ENST00000695654.1:ENST00000695692.1:ENST00000695652.1:ENST00000695655.1:ENST00000598805.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	75	2	3.13234	4.36279	5.59324	0.0322188	0.0014734	0.121593	0.0185589
chr2	3292307	3292407	1081030	0	-	0.62	(0.58,1]	chr2	117633	96	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	75	2	3.13234	4.36279	5.59324	0.0322188	0.0014734	0.121593	0.0185589
chr13	93401086	93401186	5619523	0	+	0.48	(0.45,0.485]	chr13	553052	1731	INTRON	INTRON	GPC6	ENSG00000183098.11	ENST00000377047.9	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.42543	4.36258	5.29973	0.035042	0.0103881	0.12704	0.0682598
chr15	101406154	101406254	6363613	0	-	0.46	(0.45,0.485]	chr15	627258	72	INTRON	INTRON	PCSK6	ENSG00000140479.18	ENST00000398185.6:ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000611967.4:ENST00000615296.4:ENST00000559417.2:ENST00000331826.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	69	2	3.42543	4.36258	5.29973	0.035042	0.0103881	0.12704	0.0682598
chr1	43559024	43559124	107029	0	+	0.51	(0.485,0.523]	chr1	13192	47	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	456	2	4.04973	4.362155	4.67458	0.00105382	1.93138e-4	0.0194868	0.00441241
chr3	38379045	38379145	1445834	0	+	0.45	(0.419,0.45]	chr3	154250	4	SS3_PROX	SS3_PROX:INTRON	XYLB	ENSG00000093217.11	ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1:ENST00000472721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	274	2	3.53017	4.36215	5.19413	0.0132739	1.29541e-4	0.0787251	0.00331544
chr12	132534261	132534361	5352958	0	+	0.57	(0.523,0.58]	chr12	523670	59	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	82	2	2.9513	4.362085	5.77287	0.0531089	0.00160162	0.149478	0.0197827
chr9	37222520	37222620	4149319	0	+	0.23	[0,0.29]	chr9	394662	356	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	66	2	3.56618	4.36204	5.1579	0.0269673	0.00648941	0.112113	0.0504266
chrX	133688178	133688277	8113040	0	-	0.40404	(0.39,0.419]	chrX	845486	260	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000667662.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	96	2	2.92533	4.362015	5.7987	0.0195328	0.0136122	0.0955413	0.0811697
chr10	38055660	38055760	4478513	0	+	0.41	(0.39,0.419]	chr10	428212	12	CDS	CDS:EXON_MRNA:INTRON	ZNF33A	ENSG00000189180.16	ENST00000307441.13:ENST00000374618.7:ENST00000628825.2:ENST00000458705.6:ENST00000432900.7:ENST00000469037.2	protein_coding	protein_coding	protein_coding	protein_coding	2	119	2	2.47803	4.36183	6.24563	0.0653554	7.69256e-4	0.162385	0.0118331
chr2	161326957	161327057	939069	0	+	0.34	(0.33,0.36]	chr2	103725	77	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.38283	4.361825	5.34082	0.0338211	0.0120576	0.124319	0.0754623
chr22	41616454	41616554	7817845	0	-	0.34	(0.33,0.36]	chr22	819943	82	INTRON	INTRON	DESI1	ENSG00000100418.8	ENST00000263256.7	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.38283	4.361825	5.34082	0.0338211	0.0120576	0.124319	0.0754623
chr16	4629137	4629237	6378816	0	+	0.39	(0.36,0.39]	chr16	630736	37	INTRON	INTRON	MGRN1	ENSG00000102858.13	ENST00000591895.5:ENST00000415496.5:ENST00000262370.12:ENST00000536343.5:ENST00000587747.5:ENST00000399577.9:ENST00000586183.5:ENST00000588994.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.09186	4.3617799999999995	4.6317	0.0950937	0.0687088	0.193274	0.189021
chr20	3609546	3609645	7420967	0	+	0.383838	(0.36,0.39]	chr20	773042	49	INTRON	INTRON	ATRN	ENSG00000088812.18	ENST00000262919.10:ENST00000446916.2	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.09186	4.3617799999999995	4.6317	0.0950937	0.0687088	0.193274	0.189021
chr9	124710407	124710507	4404749	0	-	0.39	(0.36,0.39]	chr9	419893	1147	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.09186	4.3617799999999995	4.6317	0.0950937	0.0687088	0.193274	0.189021
chr20	6025970	6026070	7425879	0	+	0.36	(0.33,0.36]	chr20	773616	4	SS3_PROX	SS3_PROX:INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	70	2	3.22121	4.36162	5.50203	0.0265895	0.0171454	0.111433	0.0923809
chr9	137568636	137568736	4435750	0	-	0.55	(0.523,0.58]	chr9	424466	31	INTRON	INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000475100.5:ENST00000472113.5:ENST00000485189.5:ENST00000467768.5:ENST00000477690.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	68	2	3.55341	4.36155	5.16969	0.0387762	0.00716661	0.131324	0.0541871
chr2	235629413	235629512	1063892	0	+	0.525253	(0.523,0.58]	chr2	115656	1045	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	85	2	3.27435	4.3614	5.44845	0.0321785	0.00361636	0.121593	0.0342681
chr8	8349711	8349810	3934103	0	-	0.383838	(0.36,0.39]	chr8	376133	97	INTRON	INTRON	PRAG1	ENSG00000275342.5	ENST00000615670.5:ENST00000622241.1	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	3.26869	4.361145	5.4536	0.0321864	0.016118	0.121593	0.0897679
chr7	47359301	47359401	3587384	0	-	0.53	(0.523,0.58]	chr7	346030	126	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.13506	4.36093	5.5868	0.020474	0.0186841	0.0979776	0.0976296
chr2	63898580	63898678	1165799	0	-	0.408163	(0.39,0.419]	chr2	127222	6	INTRON	INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9:ENST00000354504.7:ENST00000416400.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.09132	4.360844999999999	4.63037	0.0963077	0.0689553	0.193274	0.189169
chr7	105076862	105076962	3442725	0	+	0.41	(0.39,0.419]	chr7	333204	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	KMT2E	ENSG00000005483.22	ENST00000622386.2:ENST00000257745.9:ENST00000334884.9:ENST00000311117.8:ENST00000478990.5:ENST00000476671.5:ENST00000667857.1:ENST00000482560.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	32	2	4.09132	4.360844999999999	4.63037	0.0963077	0.0689553	0.193274	0.189169
chr9	83450836	83450936	4325057	0	-	0.4	(0.39,0.419]	chr9	413145	608	INTRON	INTRON	FRMD3	ENSG00000172159.16	ENST00000376438.5:ENST00000304195.8:ENST00000621208.4	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.09132	4.360844999999999	4.63037	0.0963077	0.0689553	0.193274	0.189169
chrX	71217360	71217446	7903346	0	+	0.418605	(0.39,0.419]	chrX	827969	1	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	GJB1	ENSG00000169562.13	ENST00000674844.1:ENST00000674549.1:ENST00000374029.2:ENST00000675209.1:ENST00000675368.1:ENST00000647424.1:ENST00000675609.1:ENST00000646835.1:ENST00000447581.2	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.09132	4.360844999999999	4.63037	0.0963077	0.0689553	0.193274	0.189169
chr3	196766936	196767036	1666798	0	+	0.4	(0.39,0.419]	chr3	174782	264	INTRON	INTRON	PAK2	ENSG00000180370.10	ENST00000327134.7	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	3.6226	4.36083	5.09906	0.0535378	0.0073612	0.150319	0.055174
chr15	72494492	72494591	6145951	0	+	0.454545	(0.45,0.485]	chr15	604518	191	INTRON	INTRON	ARIH1	ENSG00000166233.15	ENST00000379887.9:ENST00000570085.5:ENST00000564062.1:ENST00000567762.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.22352	4.36069	4.49786	0.101311	0.0496712	0.196131	0.160725
chr15	85106961	85107060	6175861	0	+	0.484848	(0.45,0.485]	chr15	607449	64	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5:ENST00000560789.5:ENST00000557819.6:ENST00000558543.5:ENST00000557954.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.22352	4.36069	4.49786	0.101311	0.0496712	0.196131	0.160725
chr16	72932994	72933094	6626734	0	-	0.47	(0.45,0.485]	chr16	663529	427	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2:ENST00000397992.5:ENST00000268489.10	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.22352	4.36069	4.49786	0.101311	0.0496712	0.196131	0.160725
chr17	15454682	15454782	6859981	0	-	0.48	(0.45,0.485]	chr17	695067	12	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.22352	4.36069	4.49786	0.101311	0.0496712	0.196131	0.160725
chr17	16199219	16199318	6863688	0	-	0.454545	(0.45,0.485]	chr17	695548	1	INTRON	INTRON	NCOR1	ENSG00000141027.22	ENST00000268712.8:ENST00000411510.5:ENST00000582357.5:ENST00000436828.5:ENST00000460276.5:ENST00000585296.1:ENST00000430577.2:ENST00000466825.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.22352	4.36069	4.49786	0.101311	0.0496712	0.196131	0.160725
chr19	23322980	23323079	7358013	0	-	0.464646	(0.45,0.485]	chr19	762771	125	INTRON	INTRON	ZNF91	ENSG00000167232.14	ENST00000596528.1:ENST00000596989.1	protein_coding	processed_transcript	protein_coding	processed_transcript	0	31	2	4.22352	4.36069	4.49786	0.101311	0.0496712	0.196131	0.160725
chr6	167892300	167892396	3074002	0	+	0.40625	(0.39,0.419]	chr6	298836	9	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	89	2	3.18264	4.36031	5.53798	0.042233	0.0043589	0.13762	0.0391245
chr1	8785209	8785309	395409	0	-	0.38	(0.36,0.39]	chr1	45073	315	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	3.34723	4.36015	5.37307	0.0361409	0.0136148	0.127853	0.0811697
chr2	200321054	200321154	986100	0	+	0.38	(0.36,0.39]	chr2	108285	116	INTRON	INTRON	SPATS2L	ENSG00000196141.14	ENST00000439084.5:ENST00000409718.5:ENST00000358677.9:ENST00000409988.7:ENST00000409385.5:ENST00000439395.5:ENST00000444012.5:ENST00000451764.6:ENST00000360760.9:ENST00000423749.5:ENST00000457757.5:ENST00000471601.5:ENST00000428692.5:ENST00000453663.5:ENST00000409140.8:ENST00000459656.5:ENST00000471533.5:ENST00000409397.6:ENST00000619961.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	71	2	3.34723	4.36015	5.37307	0.0361409	0.0136148	0.127853	0.0811697
chr11	70739986	70740086	5061681	0	-	0.6	(0.58,1]	chr11	492701	221	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	3.20215	4.36014	5.51813	0.0136092	0.013519	0.0811697	0.0792526
chr11	70686904	70687003	5061148	0	-	0.606061	(0.58,1]	chr11	492688	169	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	104	2	2.85453	4.36003	5.86553	0.0251699	6.8352e-4	0.107898	0.0108717
chr11	70658528	70658628	5060860	0	-	0.4	(0.39,0.419]	chr11	492672	37	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	71	2	3.26675	4.359495	5.45224	0.032783	0.01622	0.122593	0.0902823
chr8	122789545	122789645	3909731	0	+	0.64	(0.58,1]	chr8	373449	72	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	3.51497	4.3586	5.20223	0.0161632	0.00411607	0.0872435	0.0374453
chr2	127387625	127387713	1265652	0	-	0.75	(0.58,1]	chr2	136377	3	UTR5	UTR5:EXON_MRNA:INTRON	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	2.91493	4.358415	5.8019	0.0259506	0.007984	0.116361	0.0596361
chr4	868782	868880	2178280	0	-	0.591837	(0.58,1]	chr4	220580	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	75	2	2.74846	4.3583	5.96814	0.0605281	5.06433e-4	0.158506	0.00881473
chr21	14995097	14995196	7640311	0	-	0.313131	(0.29,0.33]	chr21	799107	34	INTRON	INTRON	ENSG00000235609:NRIP1	ENSG00000235609.7:ENSG00000180530.11	ENST00000432230.6:ENST00000400202.5:ENST00000318948.7:ENST00000400199.5:ENST00000411932.1:ENST00000638122.1:ENST00000637963.1:ENST00000637630.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	1	83	2	2.57172	4.3582	6.14468	0.0888658	6.61382e-4	0.183874	0.0106558
chr5	138754283	138754368	2545755	0	+	0.482353	(0.45,0.485]	chr5	252784	2	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	CTNNA1	ENSG00000044115.21	ENST00000517980.5:ENST00000522227.5:ENST00000524127.5:ENST00000523912.5:ENST00000627109.2:ENST00000520339.5:ENST00000521724.5:ENST00000302763.12:ENST00000518910.5:ENST00000521941.1:ENST00000519309.5:ENST00000519113.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	84	2	2.69512	4.357905000000001	6.02069	0.0794176	0.00101549	0.176565	0.0143256
chr2	201423099	201423198	1357947	0	-	0.555556	(0.523,0.58]	chr2	144424	20	INTRON	INTRON	TRAK2	ENSG00000115993.13	ENST00000332624.8:ENST00000430254.1:ENST00000451703.5:ENST00000440597.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	70	2	2.92656	4.3579	5.78924	0.0289226	0.0147166	0.124	0.0826843
chr1	150140342	150140442	241117	0	+	0.44	(0.419,0.45]	chr1	27175	294	INTRON	INTRON	VPS45	ENSG00000136631.15	ENST00000643970.1:ENST00000535106.5:ENST00000369128.9:ENST00000611412.4:ENST00000644510.2:ENST00000491789.2:ENST00000642919.1:ENST00000644526.1:ENST00000477558.2:ENST00000618148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	73	2	3.02039	4.357895	5.6954	0.0276403	0.0254103	0.120359	0.108573
chr21	38807994	38808093	7620622	0	+	0.50505	(0.485,0.523]	chr21	796138	8	INTRON	INTRON	ETS2	ENSG00000157557.13	ENST00000360214.8:ENST00000665212.1:ENST00000667466.1:ENST00000360938.8:ENST00000432278.5:ENST00000666778.1	protein_coding	protein_coding	protein_coding	protein_coding	1	90	2	3.51828	4.357885	5.19749	0.0214738	0.00672953	0.100517	0.0519464
chr22	36367896	36367996	7807203	0	-	0.51	(0.485,0.523]	chr22	818157	29	INTRON	INTRON	MYH9	ENSG00000100345.23	ENST00000216181.11:ENST00000685801.1:ENST00000692930.1:ENST00000685187.1:ENST00000691687.1:ENST00000685191.1:ENST00000688137.1:ENST00000691296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	69	2	3.02337	4.357685	5.692	0.023933	0.0171772	0.111785	0.0895975
chr17	40350325	40350425	6734463	0	+	0.51	(0.485,0.523]	chr17	677353	4	SS5_PROX	SS5_PROX:INTRON	RARA	ENSG00000131759.18	ENST00000254066.10:ENST00000394089.6:ENST00000425707.7:ENST00000394086.7:ENST00000394081.7:ENST00000475125.1	protein_coding	protein_coding	protein_coding	protein_coding	2	91	2	2.77597	4.357514999999999	5.93906	0.0166536	0.0113657	0.0917029	0.0723462
chr1	18876880	18876967	407830	0	-	0.448276	(0.419,0.45]	chr1	47238	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ALDH4A1	ENSG00000159423.17	ENST00000375341.8:ENST00000290597.9:ENST00000538839.5:ENST00000538309.5	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	2.7886	4.35746	5.92632	0.0766427	0.00191339	0.174882	0.0223437
chr15	85382469	85382569	6176222	0	+	0.46	(0.45,0.485]	chr15	607519	4	INTRON	INTRON	AKAP13	ENSG00000170776.22	ENST00000559362.5:ENST00000394518.7:ENST00000560302.5:ENST00000361243.6:ENST00000560256.1	protein_coding	protein_coding	protein_coding	protein_coding	3	118	2	2.13182	4.356685	6.58155	0.0443822	0.00421879	0.153511	0.0421633
chrX	24206325	24206425	7854891	0	+	0.38	(0.36,0.39]	chrX	823856	262	INTRON	INTRON	ZFX	ENSG00000005889.16	ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000379177.5:ENST00000459724.1:ENST00000338565.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	76	2	2.73813	4.35604	5.97395	0.0459393	0.0145438	0.154743	0.0823572
chr9	134336939	134337039	4260792	0	+	0.66	(0.58,1]	chr9	406311	99	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	86	2	2.6194	4.35598	6.09256	0.0202577	0.00452436	0.102015	0.0436138
chr14	95319011	95319110	6048839	0	-	0.676768	(0.58,1]	chr14	593433	114	INTRON	INTRON	CLMN	ENSG00000165959.12	ENST00000298912.9:ENST00000553733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	68	2	4.01623	4.355665	4.6951	0.0521567	0.00161478	0.148503	0.0199131
chr11	70735789	70735889	5061639	0	-	0.58	(0.523,0.58]	chr11	492701	179	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.13061	4.355595	4.58058	0.0860403	0.0533354	0.181766	0.167062
chr11	111611062	111611162	4938852	0	+	0.54	(0.523,0.58]	chr11	476128	80	INTRON	INTRON	SIK2	ENSG00000170145.5	ENST00000304987.4	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.13061	4.355595	4.58058	0.0860403	0.0533354	0.181766	0.167062
chr16	30989948	30990047	6579780	0	-	0.545455	(0.523,0.58]	chr16	657721	8	UTR3	UTR3:EXON_MRNA	STX1B	ENSG00000099365.11	ENST00000215095.11	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.13061	4.355595	4.58058	0.0860403	0.0533354	0.181766	0.167062
chr22	40088467	40088567	7726599	0	+	0.56	(0.523,0.58]	chr22	809581	425	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000441751.5:ENST00000402203.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.13061	4.355595	4.58058	0.0860403	0.0533354	0.181766	0.167062
chr3	13265613	13265713	1691798	0	-	0.58	(0.523,0.58]	chr3	176566	1011	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.13061	4.355595	4.58058	0.0860403	0.0533354	0.181766	0.167062
chr4	3344450	3344550	2004880	0	+	0.53	(0.523,0.58]	chr4	204663	10	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.13061	4.355595	4.58058	0.0860403	0.0533354	0.181766	0.167062
chr9	129612261	129612361	4250953	0	+	0.58	(0.523,0.58]	chr9	404743	27	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.13061	4.355595	4.58058	0.0860403	0.0533354	0.181766	0.167062
chr3	48423225	48423314	1766662	0	-	0.606742	(0.58,1]	chr3	182270	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000456774.5:ENST00000449094.5:ENST00000466353.1:ENST00000473683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	84	2	2.7859	4.355589999999999	5.92528	0.0136245	0.0062948	0.0811816	0.0523832
chr2	172027857	172027956	954882	0	+	0.40404	(0.39,0.419]	chr2	104934	56	INTRON	INTRON	METAP1D	ENSG00000172878.14	ENST00000493035.5:ENST00000315796.5:ENST00000493742.1:ENST00000491440.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	88	2	2.54293	4.3551	6.16727	0.102111	9.41833e-4	0.19738	0.0135546
chr14	39275137	39275236	5792253	0	+	0.515152	(0.485,0.523]	chr14	567494	73	INTRON	INTRON	MIA2	ENSG00000150527.18	ENST00000553728.1:ENST00000640607.2:ENST00000554392.5:ENST00000555716.5:ENST00000341749.7:ENST00000557038.5:ENST00000396165.8:ENST00000556990.1:ENST00000396158.6:ENST00000280083.7:ENST00000341502.9:ENST00000556148.5:ENST00000348007.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	605	2	3.53161	4.35499	5.17837	0.00452439	8.35221e-6	0.0436138	4.52433e-4
chr7	112288788	112288883	3447705	0	+	0.505263	(0.485,0.523]	chr7	333920	19	UTR3	UTR3:EXON_MRNA:INTRON	ZNF277	ENSG00000198839.10	ENST00000361822.8:ENST00000361946.8:ENST00000457808.5:ENST00000421043.5:ENST00000425229.5:ENST00000450657.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	109	2	2.74271	4.35494	5.96717	0.0109679	0.0108319	0.070847	0.0707085
chr21	15044273	15044373	7640805	0	-	0.33	(0.29,0.33]	chr21	799123	3	INTRON	INTRON	NRIP1	ENSG00000180530.11	ENST00000400202.5:ENST00000318948.7:ENST00000400199.5:ENST00000638122.1:ENST00000637963.1:ENST00000637630.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.12201	4.354850000000001	4.58769	0.0806047	0.0564091	0.177452	0.171933
chr4	17625459	17625557	2017131	0	+	0.326531	(0.29,0.33]	chr4	206141	18	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MED28	ENSG00000118579.13	ENST00000237380.12:ENST00000503945.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.12201	4.354850000000001	4.58769	0.0806047	0.0564091	0.177452	0.171933
chr16	85433017	85433117	6517401	0	+	0.62	(0.58,1]	chr16	646391	737	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	100	2	2.09276	4.35466	6.61656	0.0619333	0.00152464	0.180615	0.0240691
chr1	17680578	17680678	55017	0	+	0.57	(0.523,0.58]	chr1	5603	156	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	68	2	3.08569	4.354135	5.62258	0.020773	0.0193313	0.102713	0.0954446
chr1	78133504	78133603	165143	0	+	0.50505	(0.485,0.523]	chr1	18816	72	INTRON	INTRON	GIPC2	ENSG00000137960.6	ENST00000370759.4	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.12717	4.3540849999999995	4.581	0.085711	0.0545434	0.181766	0.167824
chr10	44967064	44967164	4483199	0	+	0.49	(0.485,0.523]	chr10	428600	68	INTRON	INTRON	RASSF4	ENSG00000107551.21	ENST00000489171.5:ENST00000340258.10:ENST00000427758.5:ENST00000483709.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.12717	4.3540849999999995	4.581	0.085711	0.0545434	0.181766	0.167824
chr13	112971052	112971152	5655331	0	+	0.49	(0.485,0.523]	chr13	555120	12	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.12717	4.3540849999999995	4.581	0.085711	0.0545434	0.181766	0.167824
chr16	2755237	2755336	6375323	0	+	0.515152	(0.485,0.523]	chr16	630017	12	INTRON	INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000575009.5:ENST00000576894.5:ENST00000575701.4:ENST00000630499.2:ENST00000576415.5:ENST00000571378.5:ENST00000574340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.12717	4.3540849999999995	4.581	0.085711	0.0545434	0.181766	0.167824
chr2	17541879	17541979	723398	0	+	0.49	(0.485,0.523]	chr2	84646	2	SS5_PROX	SS5_PROX:INTRON	VSNL1	ENSG00000163032.12	ENST00000404666.6:ENST00000457525.5:ENST00000295156.9:ENST00000451533.5:ENST00000483921.1:ENST00000406397.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.12717	4.3540849999999995	4.581	0.085711	0.0545434	0.181766	0.167824
chr20	41561518	41561618	7564253	0	-	0.49	(0.485,0.523]	chr20	790090	98	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.12717	4.3540849999999995	4.581	0.085711	0.0545434	0.181766	0.167824
chr17	58362443	58362543	6932485	0	-	0.57	(0.523,0.58]	chr17	706594	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RNF43	ENSG00000108375.13	ENST00000577716.5:ENST00000407977.7:ENST00000584437.5:ENST00000583753.5:ENST00000577625.5:ENST00000581868.1	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.27377	4.35394	5.43411	0.026041	0.0137592	0.109673	0.0814923
chr2	42711953	42712051	776906	0	+	0.357143	(0.33,0.36]	chr2	89176	25	INTRON	INTRON	MTA3	ENSG00000057935.14	ENST00000405592.5:ENST00000406652.5:ENST00000405094.2:ENST00000409019.5:ENST00000467925.5:ENST00000478602.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.211	4.35336	4.49572	0.103264	0.0541541	0.197541	0.167824
chr20	37405357	37405456	7473169	0	+	0.353535	(0.33,0.36]	chr20	778227	21	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SRC	ENSG00000197122.13	ENST00000692112.1:ENST00000692423.1:ENST00000373578.7:ENST00000373567.6:ENST00000373558.2:ENST00000358208.9:ENST00000477066.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.211	4.35336	4.49572	0.103264	0.0541541	0.197541	0.167824
chr5	78167662	78167761	2700258	0	-	0.333333	(0.33,0.36]	chr5	266535	16	INTRON	INTRON	AP3B1	ENSG00000132842.15	ENST00000519295.6:ENST00000255194.11:ENST00000695515.1:ENST00000695454.1:ENST00000695511.1:ENST00000695453.1:ENST00000695455.1:ENST00000695513.1:ENST00000695488.1:ENST00000695450.1:ENST00000695507.1:ENST00000695512.1:ENST00000695510.1:ENST00000695451.1:ENST00000695447.1:ENST00000695505.1:ENST00000519888.6:ENST00000695514.1:ENST00000517940.2:ENST00000517561.2:ENST00000695452.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.211	4.35336	4.49572	0.103264	0.0541541	0.197541	0.167824
chr8	42403461	42403561	3809084	0	+	0.34	(0.33,0.36]	chr8	366793	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	VDAC3	ENSG00000078668.14	ENST00000522572.5:ENST00000022615.9:ENST00000521158.5:ENST00000524291.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.211	4.35336	4.49572	0.103264	0.0541541	0.197541	0.167824
chr8	106699527	106699627	3901771	0	+	0.35	(0.33,0.36]	chr8	372863	63	INTRON	INTRON	OXR1	ENSG00000164830.19	ENST00000517566.7:ENST00000531443.6:ENST00000442977.6:ENST00000497705.5:ENST00000435082.1:ENST00000312046.10:ENST00000438229.6:ENST00000517455.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	31	2	4.211	4.35336	4.49572	0.103264	0.0541541	0.197541	0.167824
chr9	123901506	123901606	4401609	0	-	0.36	(0.33,0.36]	chr9	419733	221	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.211	4.35336	4.49572	0.103264	0.0541541	0.197541	0.167824
chr17	49025417	49025517	6750303	0	+	0.4	(0.39,0.419]	chr17	680310	4	SS3_PROX	SS3_PROX:INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2:ENST00000515586.5:ENST00000499130.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	71	2	3.41977	4.3531	5.28643	0.041475	0.0116434	0.136301	0.0736274
chr16	18377958	18378058	6557743	0	-	0.6	(0.58,1]	chr16	653466	3	SS3_PROX	SS3_PROX:INTRON	NPIPA9:PKD1P5	ENSG00000233024.7:ENSG00000254681.6	ENST00000546267.5:ENST00000532415.5	protein_coding	processed_transcript	protein_coding:transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	64	2	3.75733	4.3530750000000005	4.94882	0.0354433	0.0033279	0.127188	0.0325742
chr1	43593989	43594088	107390	0	+	0.444444	(0.419,0.45]	chr1	13240	10	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.08324	4.352985	4.62273	0.103601	0.0727147	0.199502	0.197541
chr11	17918194	17918294	5014419	0	-	0.42	(0.419,0.45]	chr11	484611	1	SS5_PROX	SS5_PROX:INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528369.5:ENST00000528200.5:ENST00000529440.5:ENST00000529151.5:ENST00000532546.5:ENST00000525920.5:ENST00000532265.5:ENST00000533241.1:ENST00000525168.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	0	32	2	4.08324	4.352985	4.62273	0.103601	0.0727147	0.199502	0.197541
chr6	24210997	24211097	3108852	0	-	0.45	(0.419,0.45]	chr6	301412	55	INTRON	INTRON	DCDC2	ENSG00000146038.12	ENST00000378454.8	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.08324	4.352985	4.62273	0.103601	0.0727147	0.199502	0.197541
chr7	139698949	139699049	3723135	0	-	0.42	(0.419,0.45]	chr7	357498	669	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	0	32	2	4.08324	4.352985	4.62273	0.103601	0.0727147	0.199502	0.197541
chrX	133650940	133651040	8112665	0	-	0.36	(0.33,0.36]	chrX	845480	540	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000692074.1:ENST00000667662.1:ENST00000666017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	71	2	3.59568	4.3529	5.11012	0.04702	0.00741959	0.143232	0.0553519
chr11	70787450	70787549	5062156	0	-	0.535354	(0.523,0.58]	chr11	492701	696	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	86	2	3.35121	4.3528649999999995	5.35452	0.0284134	0.00453096	0.114906	0.0400651
chr2	118098485	118098584	882788	0	+	0.515152	(0.485,0.523]	chr2	99952	13	INTRON	INTRON	INSIG2	ENSG00000125629.16	ENST00000411929.5:ENST00000245787.9:ENST00000485520.5:ENST00000471186.5:ENST00000467223.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	122	2	3.04951	4.35276	5.65601	0.0232802	0.00224147	0.103669	0.024843
chr11	68332771	68332871	4882285	0	+	0.54	(0.523,0.58]	chr11	470542	196	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	87	2	3.40026	4.352705	5.30515	0.0262178	0.00509102	0.110264	0.0433513
chr2	241342002	241342100	1076079	0	+	0.520408	(0.485,0.523]	chr2	116874	39	INTRON	INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000360051.7:ENST00000616972.4:ENST00000401990.5:ENST00000407971.5:ENST00000494824.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000464128.5:ENST00000484167.5:ENST00000421717.1:ENST00000481500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	70	2	2.91537	4.35252	5.78967	0.0298565	0.0146211	0.126732	0.0826064
chr7	5419461	5419561	3536265	0	-	0.6	(0.58,1]	chr7	341498	122	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	2.93515	4.352245	5.76934	0.00938921	0.00849371	0.064735	0.0617717
chr11	70737288	70737388	5061654	0	-	0.6	(0.58,1]	chr11	492701	194	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	3.03676	4.35187	5.66698	0.0198789	0.0102927	0.100864	0.0684871
chr2	235529038	235529137	1062888	0	+	0.565657	(0.523,0.58]	chr2	115656	41	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	92	2	2.60398	4.351795	6.09961	0.0241539	0.00866655	0.112732	0.0623824
chr9	129497073	129497173	4250746	0	+	0.67	(0.58,1]	chr9	404720	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	62	2	3.44157	4.351475	5.26138	0.021217	0.00760198	0.0996078	0.0561937
chr11	70738587	70738687	5061667	0	-	0.55	(0.523,0.58]	chr11	492701	207	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	67	2	3.229	4.3514099999999996	5.47382	0.0244797	0.0152072	0.106683	0.0861813
chr12	132529981	132530080	5352915	0	+	0.545455	(0.523,0.58]	chr12	523670	16	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.229	4.3514099999999996	5.47382	0.0244797	0.0152072	0.106683	0.0861813
chr21	42844869	42844968	7675420	0	-	0.636364	(0.58,1]	chr21	802287	12	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	3.07041	4.350795	5.63118	0.0109983	0.00661304	0.0708586	0.0512951
chr16	85587631	85587731	6518949	0	+	0.61	(0.58,1]	chr16	646396	309	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	2.89926	4.35058	5.8019	0.0102831	0.007984	0.0678667	0.0596361
chr1	48228549	48228649	120985	0	+	0.49	(0.485,0.523]	chr1	15166	3	SS3_PROX	SS3_PROX:INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	67	2	3.30597	4.34983	5.39369	0.0275819	0.012958	0.112782	0.0778899
chr15	101340114	101340213	6362938	0	-	0.484848	(0.45,0.485]	chr15	627196	60	INTRON	INTRON	PCSK6	ENSG00000140479.18	ENST00000677364.1:ENST00000676598.1:ENST00000558951.5:ENST00000398185.6:ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000679007.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000559605.1:ENST00000560902.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	83	2	2.90749	4.3497	5.79191	0.0588897	0.00183113	0.15607	0.0216571
chr11	61273511	61273607	5041313	0	-	0.625	(0.58,1]	chr11	488763	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10:ENST00000535710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	88	2	2.48056	4.34954	6.21852	0.0277636	0.00350812	0.12074	0.0379357
chr1	29238414	29238513	78392	0	+	0.727273	(0.58,1]	chr1	8914	13	INTRON	INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.48503	4.3494	5.21377	0.0230012	0.006811	0.102982	0.0524379
chr6	47916534	47916634	3145113	0	-	0.46	(0.45,0.485]	chr6	306778	142	INTRON	INTRON	PTCHD4	ENSG00000244694.8	ENST00000339488.9:ENST00000398738.3:ENST00000679966.1	protein_coding	protein_coding	protein_coding	protein_coding	2	95	2	3.27155	4.34871	5.42587	0.0290571	0.00535743	0.116079	0.0448556
chr3	32819432	32819531	1438886	0	+	0.515152	(0.485,0.523]	chr3	153401	1	INTRON	INTRON	TRIM71	ENSG00000206557.6	ENST00000383763.6	protein_coding	protein_coding	protein_coding	protein_coding	4	124	2	2.40624	4.34815	6.29006	0.0179987	0.00613935	0.0952934	0.0517628
chr10	75480905	75481005	4520967	0	+	0.53	(0.523,0.58]	chr10	432249	293	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.47888	4.348075	5.21727	0.0361597	0.00856566	0.127853	0.0612
chr6	147865404	147865504	3030823	0	+	0.43	(0.419,0.45]	chr6	295875	1280	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	1	74	2	3.65526	4.3478449999999995	5.04043	0.0625897	0.00712959	0.160305	0.0541241
chrX	47220192	47220290	7877805	0	+	0.489796	(0.485,0.523]	chrX	825683	7	INTRON	INTRON	CDK16	ENSG00000102225.17	ENST00000517997.5:ENST00000517479.1:ENST00000457458.6:ENST00000522883.1:ENST00000520295.5:ENST00000357227.9:ENST00000519758.5:ENST00000520893.5:ENST00000517426.5:ENST00000522234.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	69	2	2.97038	4.34784	5.7253	0.0267011	0.0162644	0.118343	0.0873195
chr2	10303477	10303577	718429	0	+	0.73	(0.58,1]	chr2	84013	3	SS5_PROX	SS5_PROX:INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8	protein_coding	protein_coding	protein_coding	protein_coding	3	126	2	2.63168	4.34781	6.06394	0.0262809	3.80904e-4	0.110482	0.00721291
chr3	133763881	133763981	1572368	0	+	0.49	(0.485,0.523]	chr3	166740	3	SS3_PROX	SS3_PROX:INTRON	TF	ENSG00000091513.16	ENST00000402696.9	protein_coding	protein_coding	protein_coding	protein_coding	1	84	2	3.25002	4.347455	5.44489	0.033374	0.00377098	0.124113	0.0353672
chr7	131472564	131472663	3484904	0	+	0.383838	(0.36,0.39]	chr7	336594	4	INTRON	INTRON	MKLN1	ENSG00000128585.18	ENST00000421797.6:ENST00000352689.11:ENST00000494785.5:ENST00000458153.5:ENST00000498778.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	311	2	3.98713	4.34735	4.70757	0.00320666	5.11253e-4	0.036204	0.00887014
chr20	62888191	62888288	7585191	0	-	0.505155	(0.485,0.523]	chr20	792848	11	UTR3	UTR3:EXON_MRNA:INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5	protein_coding	protein_coding	protein_coding	protein_coding	4	124	2	2.38229	4.347215	6.31214	0.0190335	0.00589975	0.0990735	0.0506158
chr2	113722603	113722703	1258905	0	-	0.46	(0.45,0.485]	chr2	135583	1	SS5_PROX	SS5_PROX:INTRON	SLC35F5	ENSG00000115084.15	ENST00000469702.5:ENST00000245680.7:ENST00000409106.5:ENST00000459683.5:ENST00000470204.2:ENST00000447673.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	88	2	3.35641	4.34711	5.33781	0.0297105	0.0054758	0.116341	0.0454065
chr12	112970134	112970232	5333053	0	+	0.55102	(0.523,0.58]	chr12	520374	1	UTR3	UTR3:EXON_MRNA	OAS3	ENSG00000111331.14	ENST00000679812.1:ENST00000680090.1:ENST00000681346.1:ENST00000681002.1:ENST00000679505.1:ENST00000680044.1:ENST00000681497.1:ENST00000228928.12:ENST00000679547.1:ENST00000681134.1:ENST00000679517.1:ENST00000681764.1:ENST00000679912.1:ENST00000679354.1:ENST00000681007.1:ENST00000680177.1:ENST00000679483.1:ENST00000679493.1:ENST00000679562.1:ENST00000680293.1:ENST00000549918.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	68	2	3.62427	4.34692	5.06957	0.0448011	0.0060311	0.140478	0.0484641
chr21	45453922	45454022	7630802	0	+	0.58	(0.523,0.58]	chr21	797656	481	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.62427	4.34692	5.06957	0.0448011	0.0060311	0.140478	0.0484641
chr1	12586436	12586535	402467	0	-	0.565657	(0.523,0.58]	chr1	46222	54	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	179	2	4.20938	4.3467400000000005	4.4841	0.00629905	6.06023e-4	0.0523832	0.0100269
chr7	127724599	127724699	3468962	0	+	0.38	(0.36,0.39]	chr7	335380	28	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	72	2	3.59265	4.346525	5.1004	0.0526991	0.00786519	0.14912	0.0576321
chr5	7883277	7883377	2381593	0	+	0.4	(0.39,0.419]	chr5	238116	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MTRR	ENSG00000124275.15	ENST00000264668.6:ENST00000513439.5:ENST00000511461.5:ENST00000440940.7:ENST00000510525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	100	2	3.32071	4.346215	5.37172	0.0367885	0.00538545	0.129052	0.045079
chr10	79163332	79163431	4532990	0	+	0.494949	(0.485,0.523]	chr10	432438	8	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.21778	4.3460149999999995	5.47425	0.0243396	0.0157761	0.106588	0.0884237
chr16	89350290	89350390	6660321	0	-	0.47	(0.45,0.485]	chr16	666695	66	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	72	2	3.79448	4.345665	4.89685	0.0614781	0.00430151	0.158506	0.0387835
chr13	113331076	113331176	5753241	0	-	0.64	(0.58,1]	chr13	564094	46	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	3	209	2	4.02619	4.345395	4.6646	0.00151508	4.06616e-4	0.0240331	0.00755833
chr2	200332070	200332170	986211	0	+	0.34	(0.33,0.36]	chr2	108291	22	INTRON	INTRON	SPATS2L	ENSG00000196141.14	ENST00000439084.5:ENST00000409718.5:ENST00000358677.9:ENST00000409988.7:ENST00000409385.5:ENST00000439395.5:ENST00000444012.5:ENST00000451764.6:ENST00000360760.9:ENST00000423749.5:ENST00000457757.5:ENST00000471601.5:ENST00000428692.5:ENST00000453663.5:ENST00000409140.8:ENST00000459656.5:ENST00000471533.5:ENST00000409397.6:ENST00000619961.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	189	2	4.24681	4.345305	4.4438	0.00658411	8.61808e-4	0.0538298	0.0127848
chr18	58318029	58318129	7074211	0	+	0.45	(0.419,0.45]	chr18	721192	16	INTRON	INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000676223.1:ENST00000675147.1:ENST00000592846.5:ENST00000675801.1:ENST00000456986.5:ENST00000675502.1:ENST00000357895.9:ENST00000435432.6:ENST00000586263.5:ENST00000456173.6:ENST00000676251.1:ENST00000676226.1:ENST00000675865.1:ENST00000588494.5:ENST00000675221.1:ENST00000588066.5:ENST00000431212.6:ENST00000586268.5:ENST00000587190.5:ENST00000674636.1:ENST00000674856.1:ENST00000675434.1:ENST00000635997.1:ENST00000674517.1:ENST00000592601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	120	2	2.45271	4.344935	6.23716	0.0704264	8.82327e-4	0.168159	0.0129974
chr19	16837698	16837797	7217743	0	+	0.555556	(0.523,0.58]	chr19	737614	57	INTRON	INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000596802.5	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	2.86937	4.34488	5.82039	0.0324455	0.0139724	0.130548	0.0805959
chr16	89300618	89300715	6659812	0	-	0.546392	(0.523,0.58]	chr16	666649	19	UTR3	UTR3:EXON_MRNA:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	183	2	3.58132	4.34484	5.10836	0.0193579	9.41855e-5	0.0954964	0.00261955
chr3	114787395	114787495	1879678	0	-	0.22	[0,0.29]	chr3	190923	283	INTRON	INTRON	ZBTB20	ENSG00000181722.17	ENST00000675478.1:ENST00000357258.8:ENST00000462705.5:ENST00000479879.5:ENST00000463890.5:ENST00000491500.5:ENST00000480832.5:ENST00000492665.5:ENST00000488663.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.14609	4.3444199999999995	4.54275	0.0681032	0.0482299	0.164448	0.159496
chr8	41582574	41582674	3807287	0	+	0.28	[0,0.29]	chr8	366402	36	INTRON	INTRON	GPAT4	ENSG00000158669.11	ENST00000521184.1:ENST00000520258.1:ENST00000396987.7:ENST00000519853.5:ENST00000520223.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.14609	4.3444199999999995	4.54275	0.0681032	0.0482299	0.164448	0.159496
chr2	219234467	219234556	1036050	0	+	0.41573	(0.39,0.419]	chr2	112833	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANKZF1	ENSG00000163516.14	ENST00000409849.5:ENST00000323348.10:ENST00000461731.5:ENST00000477479.5:ENST00000496346.5:ENST00000463792.5:ENST00000410034.7:ENST00000465550.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	193	2	4.07761	4.3441849999999995	4.61076	0.0100093	6.02787e-4	0.0675109	0.00998478
chr8	133295373	133295460	4084280	0	-	0.551724	(0.523,0.58]	chr8	388360	3	INTRON	INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	241	2	3.85383	4.344035	4.83424	0.0144272	0.00361323	0.0833845	0.0386078
chr6	16471134	16471233	3101546	0	-	0.383838	(0.36,0.39]	chr6	300850	377	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	469	2	3.65064	4.343815	5.03699	0.00173658	4.816e-4	0.0258022	0.00852564
chr1	43568491	43568590	107124	0	+	0.454545	(0.45,0.485]	chr1	13192	142	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.11446	4.34348	4.5725	0.0926859	0.0592571	0.188571	0.176157
chr12	62748573	62748672	5445528	0	-	0.454545	(0.45,0.485]	chr12	535900	106	INTRON	INTRON	PPM1H	ENSG00000111110.12	ENST00000228705.7:ENST00000551519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.11446	4.34348	4.5725	0.0926859	0.0592571	0.188571	0.176157
chr2	102112171	102112271	863507	0	+	0.47	(0.45,0.485]	chr2	97787	69	INTRON	INTRON	IL1R1	ENSG00000115594.12	ENST00000452403.5:ENST00000409929.5:ENST00000424272.5:ENST00000409589.5:ENST00000409329.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.11446	4.34348	4.5725	0.0926859	0.0592571	0.188571	0.176157
chr9	134361590	134361690	4261039	0	+	0.48	(0.45,0.485]	chr9	406311	346	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.11446	4.34348	4.5725	0.0926859	0.0592571	0.188571	0.176157
chr5	139654561	139654661	2549706	0	+	0.47	(0.45,0.485]	chr5	253168	30	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	2.75654	4.34344	5.93034	0.0419966	0.0130794	0.149115	0.0782396
chr17	7178116	7178210	6847858	0	-	0.62766	(0.58,1]	chr17	693469	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000574388.5:ENST00000573596.1:ENST00000573083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	261	2	3.65116	4.343275	5.03539	0.00329218	6.71442e-5	0.0368338	0.00203475
chr16	81541382	81541482	6508707	0	+	0.57	(0.523,0.58]	chr16	645911	455	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	2.74768	4.34316	5.93864	0.0411359	0.0114442	0.147756	0.0723462
chr18	76403480	76403580	7179154	0	-	0.56	(0.523,0.58]	chr18	730080	228	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.51663	4.34316	5.16969	0.0387762	0.00782908	0.131324	0.0574276
chr12	420327	420426	5148388	0	+	0.50505	(0.485,0.523]	chr12	500517	13	INTRON	INTRON	CCDC77	ENSG00000120647.10	ENST00000540180.5:ENST00000422000.5:ENST00000543504.5:ENST00000540344.5:ENST00000412006.6:ENST00000239830.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	82	2	2.62192	4.3429	6.06388	0.0849566	7.70737e-4	0.181766	0.0118331
chr1	111726575	111726673	561664	0	-	0.540816	(0.523,0.58]	chr1	64439	36	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	INKA2	ENSG00000197852.12	ENST00000527570.1:ENST00000357260.6:ENST00000534365.1:ENST00000444059.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	67	2	3.13506	4.3425899999999995	5.55012	0.0217068	0.0186841	0.100615	0.0976296
chr11	70776258	70776358	5062044	0	-	0.62	(0.58,1]	chr11	492701	584	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	252	2	3.7073	4.3424700000000005	4.97764	7.50235e-4	5.34646e-4	0.0161746	0.00914561
chr2	239080194	239080294	1389472	0	-	0.44	(0.419,0.45]	chr2	148587	109	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000494800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	73	2	3.59354	4.342435	5.09133	0.0586308	0.00820853	0.155565	0.0592025
chr16	67915380	67915479	6473552	0	+	0.565657	(0.523,0.58]	chr16	642897	53	INTRON	INTRON	PSKH1	ENSG00000159792.10	ENST00000291041.6	protein_coding	protein_coding	protein_coding	protein_coding	2	90	2	3.09806	4.34243	5.5868	0.020474	0.00764666	0.0979776	0.0563517
chr2	239279378	239279478	1391502	0	-	0.41	(0.39,0.419]	chr2	148740	278	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	75	2	3.80039	4.342025	4.88366	0.0707789	0.00484195	0.168159	0.0418176
chr2	63026142	63026242	817188	0	+	0.43	(0.419,0.45]	chr2	92205	290	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000496857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	266	2	4.19149	4.342015	4.49254	0.00534132	5.94911e-4	0.0480347	0.0098914
chr2	119766679	119766779	883658	0	+	0.46	(0.45,0.485]	chr2	100098	59	INTRON	INTRON	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000460162.1:ENST00000420482.5:ENST00000460289.5:ENST00000488279.6:ENST00000485247.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	98	2	3.42892	4.34201	5.2551	0.0373953	0.00358671	0.130656	0.0342681
chr1	91013251	91013351	525641	0	-	0.53	(0.523,0.58]	chr1	61801	305	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	90	2	2.71726	4.342	5.96674	0.0188054	0.0109075	0.0980631	0.0707085
chr10	130177362	130177461	4615946	0	+	0.555556	(0.523,0.58]	chr10	441040	19	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	90	2	2.71726	4.342	5.96674	0.0188054	0.0109075	0.0980631	0.0707085
chr3	136705408	136705508	1924885	0	-	0.43	(0.419,0.45]	chr3	195641	741	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2:ENST00000487065.5:ENST00000480733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	116	2	2.44585	4.3416999999999994	6.23755	0.0254567	0.0110181	0.115753	0.0708586
chr22	24563290	24563390	7697989	0	+	0.33	(0.29,0.33]	chr22	805757	51	INTRON	INTRON	SNRPD3	ENSG00000100028.12	ENST00000215829.8:ENST00000402849.5	protein_coding	protein_coding	protein_coding	protein_coding	2	90	2	2.8251	4.3416250000000005	5.85815	0.0151558	0.011855	0.0860239	0.0740271
chr17	40147690	40147790	6732931	0	+	0.45	(0.419,0.45]	chr17	677136	57	INTRON	INTRON	CASC3	ENSG00000108349.17	ENST00000418132.7:ENST00000264645.12:ENST00000581849.1:ENST00000584997.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	73	2	2.92337	4.34156	5.75975	0.0333415	0.0231013	0.133139	0.102982
chr17	12075998	12076097	6680430	0	+	0.444444	(0.419,0.45]	chr17	670598	58	INTRON	INTRON	MAP2K4	ENSG00000065559.15	ENST00000582183.5:ENST00000415385.7:ENST00000602305.5:ENST00000602375.5:ENST00000602811.5:ENST00000353533.10:ENST00000602537.5:ENST00000602686.5:ENST00000538465.7:ENST00000582897.5:ENST00000581941.5:ENST00000579089.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	72	2	3.02039	4.341255	5.66212	0.0276403	0.0266819	0.120359	0.111563
chr1	31579267	31579367	81039	0	+	0.49	(0.485,0.523]	chr1	9285	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LINC01226:TINAGL1	ENSG00000284543.1:ENSG00000142910.16	ENST00000639839.1:ENST00000640226.1:ENST00000457433.6:ENST00000271064.12:ENST00000461030.5:ENST00000478398.5:ENST00000481165.5:ENST00000537531.2:ENST00000468635.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	1	104	2	3.92311	4.34125	4.75939	0.0172254	0.0105998	0.0923809	0.0697435
chr1	44014436	44014532	459194	0	-	0.510417	(0.485,0.523]	chr1	55252	24	INTRON	INTRON	SLC6A9	ENSG00000196517.13	ENST00000372307.7:ENST00000372306.7:ENST00000372310.8:ENST00000673836.1:ENST00000475075.6:ENST00000357730.6:ENST00000360584.6:ENST00000492434.6:ENST00000528803.1:ENST00000489764.1:ENST00000466926.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	75	2	4.03042	4.341200000000001	4.65198	0.0783889	0.00217615	0.175203	0.0243911
chr16	52537849	52537949	6589768	0	-	0.27	[0,0.29]	chr16	658709	179	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	87	2	2.73411	4.3409699999999996	5.94783	0.0172559	0.00660506	0.0923809	0.0539418
chr17	55280681	55280781	6757265	0	+	0.43	(0.419,0.45]	chr17	681704	122	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	96	2	2.74434	4.340765	5.93719	0.0208637	0.0176643	0.102883	0.0909046
chr12	6768482	6768577	5165701	0	+	0.547368	(0.523,0.58]	chr12	502315	14	INTRON	INTRON	PTMS	ENSG00000159335.18	ENST00000540667.5:ENST00000309083.8:ENST00000389462.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	85	2	3.32604	4.34028	5.35452	0.0296013	0.00453096	0.116079	0.0400651
chr15	50681233	50681333	6255958	0	-	0.42	(0.419,0.45]	chr15	616442	178	INTRON	INTRON	TRPM7	ENSG00000092439.16	ENST00000646667.1:ENST00000560955.5	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	3.1968	4.33995	5.4831	0.0345118	0.0193853	0.126025	0.0994526
chr2	127387051	127387151	1265646	0	-	0.41	(0.39,0.419]	chr2	136375	2	SS5_PROX	SS5_PROX:INTRON	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.26675	4.339645	5.41254	0.0347088	0.01622	0.12648	0.0902823
chr20	33528665	33528764	7457931	0	+	0.50505	(0.485,0.523]	chr20	776442	380	INTRON	INTRON	CBFA2T2	ENSG00000078699.22	ENST00000471007.1:ENST00000342704.11:ENST00000375279.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	70	2	2.85817	4.33949	5.82081	0.0334631	0.0138807	0.133139	0.0804838
chr6	34588875	34588975	3124194	0	-	0.51	(0.485,0.523]	chr6	304700	17	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	2	179	2	4.22531	4.339485	4.45366	0.0060869	6.79828e-4	0.0515813	0.0108531
chr7	156679686	156679785	3738897	0	-	0.494949	(0.485,0.523]	chr7	359430	20	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	LMBR1	ENSG00000105983.23	ENST00000430825.3:ENST00000353442.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	91	2	2.63059	4.33947	6.04835	0.0230209	0.00941539	0.109585	0.0653252
chr20	33017202	33017302	7457466	0	+	0.4	(0.39,0.419]	chr20	776394	1	SS5_PROX	SS5_PROX:INTRON	BPIFB2	ENSG00000078898.7	ENST00000170150.4	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.30655	4.339135	5.37172	0.0367885	0.0148983	0.129052	0.0847741
chr14	23513533	23513626	5757088	0	+	0.55914	(0.523,0.58]	chr14	564961	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ZFHX2-AS1	ENSG00000157306.14	ENST00000556354.5:ENST00000556613.1:ENST00000553985.1:ENST00000557568.1:ENST00000554403.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	89	2	2.88829	4.338765	5.78924	0.0147166	0.0126903	0.0826843	0.0772455
chr15	40106538	40106583	6235222	0	-	0.4	(0.39,0.419]	chr15	613044	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BMF	ENSG00000104081.14	ENST00000354670.9:ENST00000561360.5:ENST00000558774.5:ENST00000559701.5:ENST00000557870.1:ENST00000560430.1	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	2.54977	4.33876	6.12775	0.0640389	0.0115883	0.184676	0.0731017
chr6	2194671	2194771	3084830	0	-	0.37	(0.36,0.39]	chr6	299526	188	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	3.52669	4.338135	5.14958	0.0493212	0.00914333	0.146207	0.063297
chr18	48735255	48735355	7058627	0	+	0.52	(0.485,0.523]	chr18	720341	232	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000587769.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	69	2	3.7132	4.337795	4.96239	0.0518747	0.00492265	0.148503	0.0423296
chr17	72555628	72555728	6963867	0	-	0.45	(0.419,0.45]	chr17	710389	212	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	76	2	3.79893	4.337455	4.87598	0.0768574	0.00509983	0.174882	0.0433857
chr13	113614639	113614738	5659147	0	+	0.636364	(0.58,1]	chr13	555781	32	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	86	2	3.41349	4.337435	5.26138	0.021217	0.00257862	0.0996078	0.0275472
chr16	85422722	85422822	6517298	0	+	0.64	(0.58,1]	chr16	646391	634	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	2.55596	4.337305	6.11865	0.0534085	0.00429384	0.167062	0.042386
chr15	75923888	75923988	6156028	0	+	0.52	(0.485,0.523]	chr15	605657	61	INTRON	INTRON	FBXO22	ENSG00000167196.14	ENST00000569749.5:ENST00000308275.8:ENST00000569022.1:ENST00000453211.6:ENST00000565036.5:ENST00000569054.5:ENST00000561885.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	67	2	3.12385	4.3371949999999995	5.55054	0.0215787	0.0193526	0.100612	0.0994526
chr6	41721566	41721666	3132609	0	-	0.54	(0.523,0.58]	chr6	305481	158	INTRON	INTRON	TFEB	ENSG00000112561.19	ENST00000358871.6:ENST00000373033.6:ENST00000230323.8:ENST00000677531.1:ENST00000403298.9:ENST00000420312.6:ENST00000424495.2:ENST00000678831.1:ENST00000419396.6:ENST00000416140.6:ENST00000678871.1:ENST00000394283.5:ENST00000679237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	89	2	2.98195	4.33676	5.69157	0.0172851	0.010154	0.0897247	0.0677546
chr1	206705163	206705262	326805	0	+	0.535354	(0.523,0.58]	chr1	36813	193	INTRON	INTRON	MAPKAPK2	ENSG00000162889.11	ENST00000367103.4:ENST00000294981.8	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	2.98158	4.336575	5.69157	0.0258432	0.0172851	0.116361	0.0897247
chr12	46486655	46486754	5218058	0	+	0.565657	(0.523,0.58]	chr12	506652	17	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000687751.1:ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2	lncRNA	lncRNA	lncRNA	lncRNA	1	68	2	2.98158	4.336575	5.69157	0.0258432	0.0172851	0.116361	0.0897247
chr10	103596822	103596921	4756050	0	-	0.50505	(0.485,0.523]	chr10	454714	29	UTR3	UTR3:EXON_MRNA	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9	protein_coding	protein_coding	protein_coding	protein_coding	2	90	2	3.08589	4.33656	5.58723	0.0203514	0.00799823	0.0979211	0.0580954
chr7	101825873	101825973	3434067	0	+	0.42	(0.419,0.45]	chr7	332510	65	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	74	2	3.68516	4.336415	4.98767	0.0669167	0.00665473	0.16272	0.0515847
chr10	34685063	34685162	4670507	0	-	0.333333	(0.33,0.36]	chr10	445537	55	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	2	96	2	3.24899	4.33633	5.42367	0.0299185	0.0060494	0.116945	0.0485995
chr9	37222620	37222720	4149320	0	+	0.32	(0.29,0.33]	chr9	394662	357	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	71	2	3.81974	4.336295	4.85285	0.0567079	0.00387217	0.154343	0.0362172
chr7	47528035	47528135	3589093	0	-	0.58	(0.523,0.58]	chr7	346138	207	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.08569	4.336245	5.5868	0.020773	0.020474	0.102713	0.0979776
chr6	137202600	137202700	3272518	0	-	0.36	(0.33,0.36]	chr6	316753	12	INTRON	INTRON	IFNGR1	ENSG00000027697.16	ENST00000458076.6:ENST00000696695.1:ENST00000367739.9:ENST00000696694.1:ENST00000645045.1:ENST00000643119.1:ENST00000696693.1:ENST00000414770.6:ENST00000696696.1:ENST00000644894.1:ENST00000646898.1:ENST00000646036.1:ENST00000645753.1:ENST00000642390.1:ENST00000647124.1:ENST00000696697.1:ENST00000696698.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	31	2	4.102	4.336175000000001	4.57035	0.0945416	0.0642879	0.188571	0.184676
chr1	12581663	12581762	402419	0	-	0.606061	(0.58,1]	chr1	46222	6	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	166	2	4.10248	4.335355	4.56823	0.00187326	0.0012583	0.0270616	0.0167083
chr16	89915736	89915832	6526335	0	+	0.604167	(0.58,1]	chr16	647720	2	INTRON	INTRON	ENSG00000267048:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000555427.1:ENST00000639847.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	1	68	2	4.04556	4.334795	4.62403	0.0578275	0.00148416	0.154343	0.0186585
chr3	185778293	185778393	1970893	0	-	0.42	(0.419,0.45]	chr3	200398	100	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	72	2	3.52905	4.3347750000000005	5.1405	0.0550015	0.00949141	0.153337	0.0650078
chr11	8776091	8776191	4987977	0	-	0.61	(0.58,1]	chr11	482789	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DENND2B	ENSG00000166444.19	ENST00000534127.5:ENST00000526757.5:ENST00000313726.11:ENST00000530438.5:ENST00000528527.5:ENST00000533425.5:ENST00000526057.5:ENST00000527510.5:ENST00000530580.5:ENST00000532651.5:ENST00000533225.5:ENST00000526126.5:ENST00000529940.5:ENST00000528523.5:ENST00000534783.1:ENST00000526241.5:ENST00000530959.5:ENST00000526155.5:ENST00000534248.5:ENST00000527347.5:ENST00000533016.1:ENST00000527516.5:ENST00000527473.5:ENST00000533471.5:ENST00000530938.5:ENST00000524757.5:ENST00000527392.5:ENST00000526828.5:ENST00000525169.5:ENST00000534665.5:ENST00000531578.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	73	2	2.91446	4.33476	5.75506	0.0464528	9.38062e-4	0.143232	0.0135546
chr1	174403244	174403344	280433	0	+	0.37	(0.36,0.39]	chr1	32717	87	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000367690.5:ENST00000526253.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	85	2	2.93677	4.33464	5.73251	0.0598652	0.0027486	0.158491	0.028553
chr3	129464992	129465092	1566559	0	+	0.48	(0.45,0.485]	chr3	165800	2	SS5_PROX	SS5_PROX:INTRON	IFT122	ENSG00000163913.14	ENST00000693654.1:ENST00000687461.1:ENST00000440957.7:ENST00000688129.1:ENST00000689313.1:ENST00000689801.1:ENST00000691583.1:ENST00000347300.6:ENST00000685282.1:ENST00000692242.1:ENST00000687377.1:ENST00000693489.1:ENST00000687645.1:ENST00000689643.1:ENST00000688970.1:ENST00000512157.6:ENST00000692228.1:ENST00000693114.1:ENST00000690862.1:ENST00000689332.1:ENST00000685921.1:ENST00000691770.1:ENST00000692985.1:ENST00000685447.1:ENST00000693162.1:ENST00000692391.1:ENST00000686531.1:ENST00000693129.1:ENST00000689796.1:ENST00000685939.1:ENST00000686830.1:ENST00000687791.1:ENST00000686473.1:ENST00000690723.1:ENST00000689871.1:ENST00000688504.1:ENST00000691964.1:ENST00000686375.1:ENST00000691733.1:ENST00000691705.1:ENST00000690209.1:ENST00000687864.1:ENST00000689819.1:ENST00000296266.7:ENST00000689492.1:ENST00000687398.1:ENST00000690663.1:ENST00000693588.1:ENST00000690677.1:ENST00000688664.1:ENST00000431818.8:ENST00000507564.5:ENST00000693233.1:ENST00000504021.6:ENST00000348417.7:ENST00000692901.1:ENST00000515783.6:ENST00000688020.1:ENST00000512220.5:ENST00000349441.6:ENST00000689005.1:ENST00000691641.1:ENST00000692321.1:ENST00000685087.1:ENST00000692728.1:ENST00000691360.1:ENST00000685189.1:ENST00000687766.1:ENST00000687845.1:ENST00000692508.1:ENST00000506507.5:ENST00000509815.1:ENST00000690617.1:ENST00000685811.1:ENST00000689384.1:ENST00000688392.1:ENST00000688266.1:ENST00000511498.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	75	2	2.62955	4.33458	6.03961	0.0530416	0.0108974	0.167062	0.0707085
chr4	885483	885582	2178457	0	-	0.656566	(0.58,1]	chr4	220625	10	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	3.03776	4.33447	5.63118	0.0109983	0.00720487	0.0708586	0.0543254
chr9	727562	727662	4104697	0	+	0.48	(0.45,0.485]	chr9	390844	135	INTRON	INTRON	KANK1	ENSG00000107104.21	ENST00000382303.5:ENST00000691319.1:ENST00000382297.7:ENST00000674102.1:ENST00000689926.1:ENST00000489369.5:ENST00000619269.5:ENST00000689779.1:ENST00000692130.1:ENST00000354485.5:ENST00000685947.1:ENST00000382289.7:ENST00000690372.1:ENST00000693656.1:ENST00000687796.1:ENST00000685481.1:ENST00000382286.3:ENST00000692757.1:ENST00000690348.1:ENST00000688039.1:ENST00000692345.1:ENST00000685380.1:ENST00000689214.1:ENST00000691645.1:ENST00000693143.1:ENST00000685590.1:ENST00000693021.1:ENST00000687662.1:ENST00000693088.1:ENST00000688567.1:ENST00000686846.1:ENST00000382293.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	88	2	3.38032	4.33439	5.28846	0.0285946	0.00612862	0.115498	0.0489549
chr3	128493037	128493136	1563226	0	+	0.656566	(0.58,1]	chr3	165331	26	INTRON	INTRON	GATA2-AS1	ENSG00000244300.3	ENST00000464242.1:ENST00000468377.1:ENST00000669945.1	lncRNA	lncRNA	lncRNA	lncRNA	1	62	2	3.60807	4.334385	5.0607	0.029633	0.00495688	0.116079	0.0425347
chr13	113051410	113051509	5656149	0	+	0.545455	(0.523,0.58]	chr13	555180	42	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	76	2	2.54344	4.33411	6.12478	0.0599121	0.00829271	0.177269	0.0610772
chr2	206009994	206010094	1362776	0	-	0.45	(0.419,0.45]	chr2	145004	2	SS3_PROX	SS3_PROX:INTRON	INO80D	ENSG00000114933.16	ENST00000403263.6:ENST00000424117.5	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	2.9727	4.33405	5.6954	0.0303302	0.0254103	0.126768	0.108573
chr18	58382146	58382246	7074883	0	+	0.6	(0.58,1]	chr18	721313	85	INTRON	INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000676223.1:ENST00000675147.1:ENST00000675801.1:ENST00000456986.5:ENST00000675502.1:ENST00000357895.9:ENST00000435432.6:ENST00000586263.5:ENST00000456173.6:ENST00000676226.1:ENST00000675865.1:ENST00000675221.1:ENST00000431212.6:ENST00000674636.1:ENST00000674856.1:ENST00000675434.1:ENST00000635997.1:ENST00000674517.1:ENST00000587881.1:ENST00000679791.1:ENST00000674921.1:ENST00000675101.1:ENST00000675699.1:ENST00000592097.6:ENST00000590248.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	109	2	3.1183	4.33404	5.54978	0.0152878	0.00165911	0.0849465	0.0202545
chr7	47359201	47359301	3587383	0	-	0.54	(0.523,0.58]	chr7	346030	125	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	176	2	4.10968	4.334020000000001	4.55836	0.0075776	4.89235e-4	0.0579104	0.0086136
chr11	12704933	12705033	4801949	0	+	0.41	(0.39,0.419]	chr11	460555	290	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000527376.3:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	3.13002	4.334	5.53798	0.0456475	0.0043589	0.142336	0.0391245
chr13	113328783	113328883	5753218	0	-	0.52	(0.485,0.523]	chr13	564094	23	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	1	83	2	3.22297	4.3339300000000005	5.44489	0.0348463	0.00377098	0.126697	0.0353672
chr9	129500430	129500527	4250781	0	+	0.587629	(0.58,1]	chr9	404726	16	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	73	2	2.87471	4.33377	5.79283	0.0495478	8.4246e-4	0.146562	0.0125912
chr16	16158009	16158109	6556435	0	-	0.29	[0,0.29]	chr16	653065	2	SS3_PROX	SS3_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	64	2	3.3667	4.33376	5.30082	0.0212677	0.0105013	0.0996805	0.0689526
chr3	42648340	42648439	1452475	0	+	0.464646	(0.45,0.485]	chr3	155084	25	UTR3	UTR3:EXON_MRNA	NKTR	ENSG00000114857.19	ENST00000429888.5:ENST00000232978.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	83	2	2.61676	4.33368	6.0506	0.0883035	9.38528e-4	0.183874	0.0135546
chr1	1222743	1222843	380414	0	-	0.64	(0.58,1]	chr1	42842	1	SS5_PROX	SS5_PROX:INTRON	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000403997.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	208	2	3.49194	4.33328	5.17462	0.0072369	4.20398e-5	0.0565323	0.0014546
chr16	81629885	81629985	6509596	0	+	0.46	(0.45,0.485]	chr16	645926	78	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	1	83	2	3.06332	4.33315	5.60298	0.0467992	0.00292492	0.143232	0.029882
chr22	42649194	42649294	7821324	0	-	0.85	(0.58,1]	chr22	820393	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CYB5R3	ENSG00000100243.22	ENST00000693367.1:ENST00000352397.10:ENST00000361740.9:ENST00000692152.1:ENST00000693363.1:ENST00000689795.1:ENST00000686523.1:ENST00000407332.6:ENST00000687183.1:ENST00000691295.1:ENST00000690835.1:ENST00000689195.1:ENST00000688244.1:ENST00000690993.1:ENST00000689239.1:ENST00000692344.1:ENST00000686129.1:ENST00000466276.2:ENST00000693716.1:ENST00000688004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	173	2	3.95573	4.333105	4.7104799999999996	0.00191878	0.00136852	0.0226011	0.0223755
chr10	45856992	45857092	4678139	0	-	0.47	(0.45,0.485]	chr10	446183	17	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000610690.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	2	91	2	2.76444	4.333055	5.90167	0.0178454	0.0137135	0.0945384	0.0799457
chr1	228151695	228151794	358103	0	+	0.676768	(0.58,1]	chr1	40434	13	INTRON	INTRON	GJC2	ENSG00000198835.4	ENST00000366714.3	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	3.40767	4.33249	5.25731	0.0197265	0.00358178	0.0958249	0.0342681
chr21	37073973	37074071	7617417	0	+	0.510204	(0.485,0.523]	chr21	795680	1	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	89	2	2.93924	4.332269999999999	5.7253	0.0162644	0.0113973	0.0873195	0.0722395
chrX	132057699	132057798	7953384	0	+	0.333333	(0.33,0.36]	chrX	832056	18	INTRON	INTRON	STK26	ENSG00000134602.16	ENST00000354719.10:ENST00000394334.7:ENST00000481105.5:ENST00000394335.6:ENST00000496850.1	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.45733	4.3321000000000005	5.20687	0.041040600000000003	0.0102015	0.136289	0.0678072
chr16	75363732	75363832	6645524	0	-	0.39	(0.36,0.39]	chr16	664519	8	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4	protein_coding	protein_coding	protein_coding	protein_coding	2	94	2	2.7459	4.33209	5.91828	0.0201393	0.0158902	0.101501	0.0859576
chr12	70327815	70327915	5263899	0	+	0.39	(0.36,0.39]	chr12	513328	1	SS5_PROX	SS5_PROX:INTRON	CNOT2	ENSG00000111596.14	ENST00000418359.7:ENST00000552319.5:ENST00000550160.5:ENST00000551132.5:ENST00000548021.5:ENST00000550641.6:ENST00000229195.8:ENST00000552915.5:ENST00000549443.5:ENST00000552483.5:ENST00000547321.5:ENST00000548159.5:ENST00000549750.5:ENST00000551043.5:ENST00000548599.5:ENST00000550194.5:ENST00000551873.5:ENST00000552151.2:ENST00000548863.1:ENST00000548230.1:ENST00000547149.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	70	2	3.09749	4.332015	5.56654	0.0272676	0.023009	0.112327	0.109581
chr12	28250966	28251066	5195186	0	+	0.39	(0.36,0.39]	chr12	505393	244	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000538586.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000544649.5:ENST00000545336.5:ENST00000536442.6:ENST00000544780.5:ENST00000543534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	86	2	2.55061	4.33187	6.11313	0.10062	0.00107374	0.196131	0.0148869
chr13	98180728	98180828	5634035	0	+	0.44	(0.419,0.45]	chr13	553462	24	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000600648.1:ENST00000596580.2:ENST00000376581.9:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	73	2	2.8723	4.33159	5.79088	0.0367198	0.022052	0.139793	0.101502
chr2	101032757	101032850	1238900	0	-	0.365591	(0.36,0.39]	chr2	133727	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TBC1D8	ENSG00000204634.13	ENST00000409318.2:ENST00000376840.8:ENST00000473937.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	85	2	2.96725	4.331495	5.69574	0.0573348	0.00299965	0.154343	0.030427
chr6	167891529	167891625	3073994	0	+	0.302083	(0.29,0.33]	chr6	298836	1	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	112	2	2.79315	4.33104	5.86893	0.0343822	0.00137721	0.125877	0.0178071
chrX	65516431	65516527	8055038	0	-	0.5	(0.485,0.523]	chrX	840752	11	INTRON	INTRON	LAS1L	ENSG00000001497.18	ENST00000677056.1:ENST00000677969.1:ENST00000374811.8:ENST00000374807.9:ENST00000677834.1:ENST00000484069.1:ENST00000374804.9:ENST00000677986.1:ENST00000677087.1:ENST00000679056.1:ENST00000679261.1:ENST00000678074.1:ENST00000678705.1:ENST00000679277.1:ENST00000677154.1:ENST00000678547.1:ENST00000678956.1:ENST00000679116.1:ENST00000678848.1:ENST00000678173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	89	2	2.81013	4.330715	5.8513	0.0154038	0.0131886	0.0869771	0.0785398
chr3	128496598	128496698	1563262	0	+	0.57	(0.523,0.58]	chr3	165333	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GATA2-AS1	ENSG00000244300.3	ENST00000464242.1:ENST00000468377.1:ENST00000669945.1	lncRNA	lncRNA	lncRNA	lncRNA	1	71	2	3.87732	4.330579999999999	4.78384	0.0663135	0.00318505	0.162385	0.0316631
chr11	129845435	129845535	4965069	0	+	0.28	[0,0.29]	chr11	479911	168	INTRON	INTRON	TMEM45B	ENSG00000151715.8	ENST00000281441.8:ENST00000527754.1:ENST00000529381.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	85	2	3.67797	4.3305050000000005	4.98304	0.0124081	0.00935344	0.0761186	0.0646157
chr6	3343373	3343473	3086923	0	-	0.39	(0.36,0.39]	chr6	299774	190	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000496753.1:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	71	2	3.56005	4.3302249999999995	5.1004	0.0526991	0.00847528	0.14912	0.0607325
chr14	89306217	89306317	6027163	0	-	0.5	(0.485,0.523]	chr14	591449	213	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	283	2	3.88607	4.33016	4.77425	0.00211478	4.88642e-4	0.028892	0.00860857
chr14	95408161	95408261	6048858	0	-	0.53	(0.523,0.58]	chr14	593438	10	UTR3	UTR3:EXON_MRNA	SYNE3	ENSG00000176438.13	ENST00000682763.1:ENST00000557275.5	protein_coding	protein_coding	protein_coding	protein_coding	3	107	2	2.7796	4.33016	5.88072	0.0126258	0.00988091	0.0761905	0.0664239
chr17	79023706	79023805	6980993	0	-	0.484848	(0.45,0.485]	chr17	712924	31	INTRON	INTRON	C1QTNF1-AS1	ENSG00000265096.3	ENST00000581579.2:ENST00000577521.1	lncRNA	lncRNA	lncRNA	lncRNA	1	68	2	3.08169	4.330115	5.57854	0.0230065	0.0220375	0.10754	0.102982
chr11	68397015	68397115	4882932	0	+	0.64	(0.58,1]	chr11	470578	66	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	79	2	3.51497	4.329969999999999	5.14497	0.0161632	0.00474658	0.0872435	0.0413976
chr1	2290098	2290198	5113	0	+	0.62	(0.58,1]	chr1	1052	417	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	82	2	3.10233	4.3295699999999995	5.55681	0.0126042	0.00607723	0.0761905	0.0487928
chr16	89433623	89433723	6661170	0	-	0.63	(0.58,1]	chr16	666753	19	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	84	2	2.6194	4.329165	6.03893	0.0202577	0.00503456	0.102015	0.0464858
chr5	180809633	180809731	2823311	0	-	0.540816	(0.523,0.58]	chr5	277054	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	MGAT1	ENSG00000131446.17	ENST00000333055.8:ENST00000393340.7:ENST00000446023.6:ENST00000506889.1:ENST00000514438.1:ENST00000513431.5:ENST00000504385.5:ENST00000514760.1:ENST00000512080.1:ENST00000510341.1:ENST00000508702.1:ENST00000513149.1:ENST00000508090.1:ENST00000510962.1:ENST00000506708.1:ENST00000506033.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	82	2	3.16507	4.3291450000000005	5.49322	0.0382777	0.00324246	0.131324	0.0319521
chr2	235508037	235508137	1062676	0	+	0.46	(0.45,0.485]	chr2	115651	128	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	72	2	2.75654	4.329105	5.90167	0.0419966	0.0137135	0.149115	0.0799457
chr16	81616005	81616104	6509456	0	+	0.666667	(0.58,1]	chr16	645921	51	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	61	2	3.39676	4.32907	5.26138	0.021217	0.0085026	0.0996078	0.0608246
chr9	35728405	35728504	4298428	0	-	0.585859	(0.58,1]	chr9	411216	23	INTRON	INTRON	TLN1	ENSG00000137076.21	ENST00000314888.10:ENST00000378192.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	61	2	3.39676	4.32907	5.26138	0.021217	0.0085026	0.0996078	0.0608246
chr11	70802828	70802927	5062311	0	-	0.565657	(0.523,0.58]	chr11	492707	39	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5:ENST00000460048.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	71	2	2.74768	4.328825	5.90997	0.0411359	0.012016	0.147756	0.0743424
chr3	47022136	47022236	1758604	0	-	0.5	(0.485,0.523]	chr3	181202	19	INTRON	INTRON	SETD2	ENSG00000181555.22	ENST00000691544.1:ENST00000638947.2:ENST00000686876.1:ENST00000687657.1:ENST00000431180.5:ENST00000409792.4:ENST00000330022.11:ENST00000686773.1:ENST00000685005.1:ENST00000690461.1:ENST00000685505.1:ENST00000692883.1:ENST00000693321.1:ENST00000688290.1:ENST00000691902.1:ENST00000690157.1:ENST00000692362.1:ENST00000685237.1:ENST00000693738.1:ENST00000686792.1:ENST00000445387.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	66	2	3.30597	4.32882	5.35167	0.0294163	0.012958	0.116079	0.0778899
chrX	1397824	1397924	7830139	0	+	0.6	(0.58,1]	chrX	822055	2	INTRON	INTRON	LINC00106	ENSG00000236871.7	ENST00000434938.7:ENST00000430235.7	lncRNA	lncRNA	lncRNA	lncRNA	4	116	2	2.13564	4.32881	6.52198	0.0287631	0.00186556	0.123764	0.0269723
chr5	1104301	1104400	2608894	0	-	0.535354	(0.523,0.58]	chr5	259667	97	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	3.44013	4.3286999999999995	5.21727	0.0361597	0.00938609	0.127853	0.064735
chr20	37404763	37404862	7473163	0	+	0.575758	(0.523,0.58]	chr20	778227	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SRC	ENSG00000197122.13	ENST00000692112.1:ENST00000692423.1:ENST00000373578.7:ENST00000373567.6:ENST00000373558.2:ENST00000358208.9:ENST00000477066.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	67	2	3.03457	4.328575	5.62258	0.0231444	0.0193313	0.109883	0.0954446
chr11	18012301	18012401	5015382	0	-	0.59	(0.58,1]	chr11	484705	4	SS5_PROX	SS5_PROX:INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528200.5:ENST00000532265.5:ENST00000529728.5:ENST00000530613.5:ENST00000532389.5:ENST00000530925.5:ENST00000533328.5:ENST00000532212.5:ENST00000524716.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	218	2	4.00449	4.328555	4.65262	0.00242684	2.34232e-4	0.0310622	0.00506154
chr4	39867888	39867982	2218029	0	-	0.276596	[0,0.29]	chr4	224111	5	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000507020.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	64	2	3.44983	4.32848	5.20713	0.0248721	0.00861801	0.10758	0.0612699
chr19	2441417	2441516	7309600	0	-	0.585859	(0.58,1]	chr19	753890	25	INTRON	INTRON	LMNB2	ENSG00000176619.13	ENST00000325327.4	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	3.19823	4.328475	5.45872	0.0287301	0.00211999	0.115888	0.0239744
chr22	32805218	32805317	7717661	0	+	0.616162	(0.58,1]	chr22	807776	27	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	3.83792	4.32827	4.81862	0.0102696	0.00865536	0.0678072	0.0623824
chr6	144689829	144689929	3023968	0	+	0.5	(0.485,0.523]	chr6	295451	109	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000367526.8	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	2.85123	4.32819	5.80515	0.0614408	0.00153111	0.158506	0.0191213
chr1	30935342	30935442	434627	0	-	0.5	(0.485,0.523]	chr1	51446	16	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000530669.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	66	2	3.26255	4.32812	5.39369	0.0275819	0.0142848	0.112782	0.0833845
chr10	73708348	73708447	4716789	0	-	0.515152	(0.485,0.523]	chr10	449734	29	INTRON	INTRON	BMS1P4:ENSG00000272140	ENSG00000271816.1:ENSG00000272140.2	ENST00000580790.1:ENST00000415917.2:ENST00000580623.1	lncRNA	lncRNA	lncRNA	lncRNA	1	66	2	3.26255	4.32812	5.39369	0.0275819	0.0142848	0.112782	0.0833845
chr10	131917688	131917788	4616193	0	+	0.58	(0.523,0.58]	chr10	441069	47	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	84	2	3.30043	4.327475	5.35452	0.0308549	0.00453096	0.119556	0.0400651
chr7	138510202	138510302	3502503	0	+	0.41	(0.39,0.419]	chr7	337502	54	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	145	2	2.40909	4.327249999999999	6.24541	0.0168521	0.00955236	0.0920137	0.0658012
chr5	65759423	65759521	2436205	0	+	0.326531	(0.29,0.33]	chr5	242644	2	INTRON	INTRON	NLN	ENSG00000123213.23	ENST00000380985.10:ENST00000502464.5:ENST00000514991.5:ENST00000506539.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	68	2	3.63018	4.327065	5.02395	0.0445554	0.00619392	0.140478	0.0494553
chr16	57275033	57275133	6596490	0	-	0.55	(0.523,0.58]	chr16	659505	118	INTRON	INTRON	PLLP	ENSG00000102934.10	ENST00000613167.4:ENST00000219207.10:ENST00000569059.5	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	2.918	4.327045	5.73609	0.0558053	0.0017613	0.154188	0.0211077
chrX	1398124	1398224	7830142	0	+	0.48	(0.45,0.485]	chrX	822055	5	INTRON	INTRON	LINC00106	ENSG00000236871.7	ENST00000434938.7:ENST00000430235.7	lncRNA	lncRNA	lncRNA	lncRNA	1	84	2	3.17691	4.326695	5.47648	0.0393744	0.0039628	0.132578	0.0368027
chr3	188825330	188825430	1658535	0	+	0.45	(0.419,0.45]	chr3	173846	647	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000617246.5:ENST00000618621.4:ENST00000640853.1:ENST00000459897.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	72	2	3.56166	4.3264949999999995	5.09133	0.0586308	0.00882182	0.155565	0.061625
chr8	8784242	8784341	3934638	0	-	0.444444	(0.419,0.45]	chr8	376177	10	UTR3	UTR3:EXON_MRNA	MFHAS1	ENSG00000147324.11	ENST00000276282.7	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	3.56166	4.3264949999999995	5.09133	0.0586308	0.00882182	0.155565	0.061625
chr1	52449659	52449759	484154	0	-	0.39	(0.36,0.39]	chr1	57516	26	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000469810.1:ENST00000528642.5:ENST00000497120.1:ENST00000484723.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.09186	4.326309999999999	4.56076	0.103289	0.0687088	0.197541	0.193274
chr10	101532691	101532771	4572191	0	+	0.3625	(0.36,0.39]	chr10	436495	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BTRC	ENSG00000166167.18	ENST00000393441.8:ENST00000408038.6:ENST00000370187.8	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.09186	4.326309999999999	4.56076	0.103289	0.0687088	0.197541	0.193274
chr5	65949486	65949586	2437582	0	+	0.38	(0.36,0.39]	chr5	242731	223	INTRON	INTRON	ERBIN	ENSG00000112851.15	ENST00000380943.6:ENST00000507490.1:ENST00000416865.6:ENST00000380935.5:ENST00000284037.10:ENST00000380938.6:ENST00000511297.5:ENST00000506030.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.09186	4.326309999999999	4.56076	0.103289	0.0687088	0.197541	0.193274
chr7	130407274	130407373	3708705	0	-	0.373737	(0.36,0.39]	chr7	356482	22	INTRON	INTRON	CEP41	ENSG00000106477.20	ENST00000541543.6:ENST00000675649.1:ENST00000223208.10:ENST00000675596.1:ENST00000676312.1:ENST00000675542.1:ENST00000675168.1:ENST00000675328.1:ENST00000674539.1:ENST00000675813.1:ENST00000674630.1:ENST00000676243.1:ENST00000676115.1:ENST00000480206.2:ENST00000675721.1:ENST00000675962.1:ENST00000484549.6:ENST00000675803.1:ENST00000675935.1:ENST00000343969.10:ENST00000675563.1:ENST00000492389.6:ENST00000675138.1:ENST00000471201.6:ENST00000477003.6:ENST00000472739.6:ENST00000475282.6:ENST00000675626.1:ENST00000675494.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	31	2	4.09186	4.326309999999999	4.56076	0.103289	0.0687088	0.197541	0.193274
chr8	25259448	25259548	3774833	0	+	0.39	(0.36,0.39]	chr8	363472	153	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000410074.5:ENST00000481100.5	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.09186	4.326309999999999	4.56076	0.103289	0.0687088	0.197541	0.193274
chr1	228141833	228141929	358002	0	+	0.510417	(0.485,0.523]	chr1	40399	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	66	2	3.21778	4.326155	5.43453	0.0258944	0.0157761	0.109555	0.0884237
chr3	172182744	172182844	1628901	0	+	0.34	(0.33,0.36]	chr3	170559	338	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	127	2	2.28635	4.3259	6.36545	0.025751	0.00644852	0.116361	0.0530227
chr2	62730994	62731094	814207	0	+	0.32	(0.29,0.33]	chr2	92078	233	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000449820.5:ENST00000426940.5:ENST00000413434.5:ENST00000405482.5:ENST00000427809.5:ENST00000494958.1:ENST00000472809.5:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	67	2	3.05751	4.325785	5.59406	0.0226356	0.0184845	0.108193	0.0928429
chr16	81542882	81542982	6508722	0	+	0.5	(0.485,0.523]	chr16	645911	470	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	89	2	2.74097	4.325685	5.9104	0.0180255	0.0119344	0.0952934	0.0741726
chr12	31283569	31283668	5405629	0	-	0.393939	(0.39,0.419]	chr12	529415	3	INTRON	INTRON	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000448582.6:ENST00000454658.6:ENST00000544921.5:ENST00000542983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.09132	4.325374999999999	4.55943	0.104562	0.0689553	0.19835	0.193274
chr13	50560019	50560119	5598225	0	+	0.4	(0.39,0.419]	chr13	551685	263	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1:ENST00000484869.6	lncRNA	lncRNA	lncRNA	lncRNA	0	31	2	4.09132	4.325374999999999	4.55943	0.104562	0.0689553	0.19835	0.193274
chr3	114617722	114617822	1877973	0	-	0.4	(0.39,0.419]	chr3	190879	180	INTRON	INTRON	ZBTB20	ENSG00000181722.17	ENST00000675478.1:ENST00000357258.8:ENST00000462705.5:ENST00000393785.6:ENST00000471418.5:ENST00000481632.5:ENST00000464560.5:ENST00000676079.1:ENST00000479879.5:ENST00000463890.5:ENST00000491500.5:ENST00000480832.5:ENST00000492665.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	31	2	4.09132	4.325374999999999	4.55943	0.104562	0.0689553	0.19835	0.193274
chr5	179699481	179699577	2604453	0	+	0.416667	(0.39,0.419]	chr5	258880	7	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CANX	ENSG00000127022.16	ENST00000681674.1:ENST00000681712.1:ENST00000681903.1:ENST00000680406.1:ENST00000502296.6:ENST00000504734.5:ENST00000452673.6:ENST00000679719.1:ENST00000679523.1:ENST00000679395.1:ENST00000681504.1:ENST00000679642.1:ENST00000681894.1:ENST00000680504.1:ENST00000681265.1:ENST00000680894.1:ENST00000680812.1:ENST00000680614.1:ENST00000680985.1:ENST00000680837.1:ENST00000680827.1:ENST00000681576.1:ENST00000680984.1:ENST00000680042.1:ENST00000681762.1:ENST00000502498.6:ENST00000681476.1:ENST00000681072.1:ENST00000247461.9:ENST00000513246.6:ENST00000680618.1:ENST00000502673.6:ENST00000680092.1:ENST00000506654.6:ENST00000514032.5:ENST00000681733.1:ENST00000679471.1:ENST00000679527.1:ENST00000680006.1:ENST00000681398.1:ENST00000681431.1:ENST00000680013.1:ENST00000681076.1:ENST00000681168.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	31	2	4.09132	4.325374999999999	4.55943	0.104562	0.0689553	0.19835	0.193274
chrX	2230825	2230925	7966146	0	-	0.41	(0.39,0.419]	chrX	834328	92	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11	protein_coding	protein_coding	protein_coding	protein_coding	0	31	2	4.09132	4.325374999999999	4.55943	0.104562	0.0689553	0.19835	0.193274
chrX	9609904	9610004	7843899	0	+	0.4	(0.39,0.419]	chrX	822423	490	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	31	2	4.09132	4.325374999999999	4.55943	0.104562	0.0689553	0.19835	0.193274
chr21	41337578	41337678	7621682	0	+	0.52	(0.485,0.523]	chr21	796323	142	INTRON	INTRON	FAM3B	ENSG00000183844.17	ENST00000479810.6:ENST00000518236.1:ENST00000357985.7:ENST00000398647.7:ENST00000398652.7:ENST00000398646.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	69	2	3.74509	4.325255	4.90542	0.0561086	0.0045454	0.154188	0.0401487
chr10	46806212	46806311	4484745	0	+	0.494949	(0.485,0.523]	chr10	428921	39	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000688259.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	108	2	2.86059	4.32513	5.78967	0.0146211	0.0082018	0.0826064	0.0591998
chr7	713401	713499	3525233	0	-	0.571429	(0.523,0.58]	chr7	340440	3	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000537384.6:ENST00000403562.5:ENST00000417852.5:ENST00000488474.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	80	2	2.7389	4.325085	5.91127	0.072318	0.00111349	0.168347	0.0152496
chr13	75652616	75652716	5613190	0	+	0.4	(0.39,0.419]	chr13	552688	155	INTRON	INTRON	ENSG00000261553:LMO7	ENSG00000261553.5:ENSG00000136153.20	ENST00000563635.5:ENST00000341547.8:ENST00000357063.7:ENST00000533305.5:ENST00000377499.9:ENST00000377534.8	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	2	100	2	3.3633	4.324865	5.28643	0.041475	0.00485133	0.136301	0.0418836
chr11	65444741	65444841	4871789	0	+	0.54	(0.523,0.58]	chr11	468177	221	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	91	6865	2	4.06742	4.324540000000001	4.58166	2.44629e-4	2.65144e-5	0.00884339	0.00102793
chr17	340552	340652	6821694	0	-	0.68	(0.58,1]	chr17	689625	10	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000577079.5:ENST00000573780.5:ENST00000575130.5:ENST00000575634.5	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	2.38295	4.324465	6.26598	0.0730701	0.00318361	0.199669	0.0360488
chr18	76405778	76405878	7179177	0	-	0.62	(0.58,1]	chr18	730080	251	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.25332	4.32439	5.39546	0.0168207	0.0120565	0.0884836	0.0754623
chr8	130276941	130277041	4081963	0	-	0.59	(0.58,1]	chr8	388157	300	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000521075.5:ENST00000524367.5:ENST00000520927.5:ENST00000524299.1:ENST00000521426.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	61	2	3.25332	4.32439	5.39546	0.0168207	0.0120565	0.0884836	0.0754623
chr13	113330079	113330179	5753231	0	-	0.6	(0.58,1]	chr13	564094	36	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	4	113	2	2.29193	4.324195	6.35646	0.0198481	0.00264106	0.100864	0.0325876
chr16	73055553	73055652	6627966	0	-	0.515152	(0.485,0.523]	chr16	663553	76	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2:ENST00000397992.5	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	2.95352	4.324145	5.69477	0.0528263	0.00203227	0.14912	0.0232814
chr16	87917962	87918062	6657545	0	-	0.56	(0.523,0.58]	chr16	666059	127	INTRON	INTRON	CA5A	ENSG00000174990.8	ENST00000649158.1:ENST00000648177.1:ENST00000649794.3:ENST00000648022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	284	2	3.75859	4.323465000000001	4.88834	0.00169664	6.91189e-4	0.0255321	0.0109563
chr20	36316601	36316700	7469153	0	+	0.585859	(0.58,1]	chr20	777805	97	INTRON	INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	3.75733	4.32339	4.88945	0.0388928	0.0033279	0.131324	0.0325742
chr6	519980	520079	3077340	0	-	0.656566	(0.58,1]	chr6	299297	199	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	3.75733	4.32339	4.88945	0.0388928	0.0033279	0.131324	0.0325742
chr2	25744676	25744776	1109107	0	-	0.46	(0.45,0.485]	chr2	120953	2	SS3_PROX	SS3_PROX:INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000404843.5:ENST00000673455.1:ENST00000672666.1	protein_coding	protein_coding	protein_coding	protein_coding	1	82	2	2.65647	4.32331	5.99015	0.0837071	0.00110015	0.181508	0.015136
chr6	36676570	36676670	2906351	0	+	0.51	(0.485,0.523]	chr6	285222	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CDKN1A	ENSG00000124762.14	ENST00000615513.4:ENST00000448526.6:ENST00000459970.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	66	2	3.4289	4.323295	5.21769	0.0359739	0.00977282	0.127853	0.0664239
chr9	133856384	133856484	4428962	0	-	0.68	(0.58,1]	chr9	423304	217	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	2.66286	4.32304	5.98322	0.0183006	0.00562007	0.0958973	0.0493906
chr1	43595371	43595470	107404	0	+	0.474747	(0.45,0.485]	chr1	13240	24	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	2.92826	4.322425	5.71659	0.0301249	0.018513	0.126768	0.0928429
chr8	80096324	80096424	4005351	0	-	0.44	(0.419,0.45]	chr8	382857	156	INTRON	INTRON	TPD52	ENSG00000076554.16	ENST00000518937.6:ENST00000379096.9:ENST00000519303.6:ENST00000521354.5:ENST00000518517.5:ENST00000521241.6:ENST00000523753.5:ENST00000519250.5:ENST00000520795.5:ENST00000521561.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	74	2	2.7644	4.32242	5.88044	0.0447981	0.0192645	0.154539	0.0954446
chr8	80141157	80141257	4005800	0	-	0.49	(0.485,0.523]	chr8	382863	209	INTRON	INTRON	TPD52	ENSG00000076554.16	ENST00000518937.6:ENST00000379096.9:ENST00000519303.6:ENST00000521354.5:ENST00000518517.5:ENST00000521241.6:ENST00000523753.5:ENST00000519250.5:ENST00000520795.5:ENST00000521561.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	109	2	2.43796	4.3213799999999996	6.2048	0.062523	5.23665e-4	0.160305	0.0090184
chr19	6691027	6691127	7322652	0	-	0.44	(0.419,0.45]	chr19	756434	3	SS3_PROX	SS3_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000695653.1:ENST00000695654.1:ENST00000695692.1:ENST00000695652.1:ENST00000695655.1:ENST00000598805.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	70	2	3.23773	4.32125	5.40477	0.0385125	0.0178095	0.131324	0.0943752
chr5	55949778	55949876	2661744	0	-	0.438776	(0.419,0.45]	chr5	263927	4	INTRON	INTRON	IL6ST	ENSG00000134352.20	ENST00000381298.7:ENST00000336909.9:ENST00000381287.8:ENST00000651614.1:ENST00000503773.6:ENST00000502326.7:ENST00000381294.7:ENST00000583149.1:ENST00000381293.6:ENST00000381286.7:ENST00000522633.2:ENST00000423954.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	70	2	3.23773	4.32125	5.40477	0.0385125	0.0178095	0.131324	0.0943752
chr14	104870455	104870555	5925916	0	+	0.63	(0.58,1]	chr14	579942	15	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	2	89	2	3.58144	4.32107	5.0607	0.029633	0.00158507	0.116079	0.0196418
chr16	4081471	4081570	6541445	0	-	0.323232	(0.29,0.33]	chr16	650517	274	INTRON	INTRON	ADCY9	ENSG00000162104.10	ENST00000294016.8:ENST00000571467.1:ENST00000572288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	66	2	3.20079	4.32107	5.44135	0.0236557	0.01667	0.105002	0.0917029
chr3	66036195	66036295	1815844	0	-	0.37	(0.36,0.39]	chr3	187318	271	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	71	2	3.59265	4.32107	5.04949	0.0563927	0.00786519	0.154188	0.0576321
chr7	127708147	127708246	3468794	0	+	0.373737	(0.36,0.39]	chr7	335370	1	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.49254	4.32106	5.14958	0.0493212	0.00987589	0.146207	0.0664239
chr13	24173388	24173488	5549146	0	+	0.39	(0.36,0.39]	chr13	547673	105	INTRON	INTRON	SPATA13	ENSG00000182957.16	ENST00000424834.6:ENST00000382108.8:ENST00000466831.2:ENST00000382095.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	69	2	3.26869	4.32088	5.37307	0.0361409	0.016118	0.127853	0.0897679
chr4	87073931	87074031	2080485	0	+	0.55	(0.523,0.58]	chr4	212214	238	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000544085.6:ENST00000307808.10:ENST00000511722.5:ENST00000514970.2	protein_coding	protein_coding	protein_coding	protein_coding	1	82	2	3.19317	4.32081	5.44845	0.0366207	0.00361636	0.128697	0.0342681
chrX	120435902	120436000	8096599	0	-	0.377551	(0.36,0.39]	chrX	844120	41	INTRON	INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	189	2	3.89235	4.32074	4.74913	0.0135325	4.0985e-4	0.0793001	0.00761171
chr17	4840732	4840832	6671960	0	+	0.49	(0.485,0.523]	chr17	668609	67	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	90	2	2.59183	4.32009	6.04835	0.0250389	0.00941539	0.114418	0.0653252
chr2	235522224	235522324	1062818	0	+	0.51	(0.485,0.523]	chr2	115651	270	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	108	2	2.34984	4.31995	6.29006	0.0271926	0.00613935	0.119337	0.0517628
chr12	132544117	132544216	5353057	0	+	0.626263	(0.58,1]	chr12	523670	158	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.20215	4.319835	5.43752	0.0156166	0.0136092	0.0849828	0.0811697
chr1	1109059	1109158	380273	0	-	0.535354	(0.523,0.58]	chr1	42816	18	INTRON	INTRON	C1orf159	ENSG00000131591.18	ENST00000379339.5:ENST00000379325.7:ENST00000421241.7:ENST00000467751.5:ENST00000477196.5:ENST00000434641.5:ENST00000482816.5:ENST00000462097.5:ENST00000475119.5:ENST00000472741.5:ENST00000480643.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	90	2	3.20552	4.319815	5.43411	0.026041	0.00584144	0.109673	0.0474117
chr20	18139545	18139643	7441529	0	+	0.377551	(0.36,0.39]	chr20	774399	6	INTRON	INTRON	KAT14:PET117	ENSG00000149474.15:ENSG00000232838.4	ENST00000677174.1:ENST00000677573.1:ENST00000377681.8:ENST00000676992.1:ENST00000678777.1:ENST00000688188.1:ENST00000432901.4:ENST00000677266.1:ENST00000677610.1:ENST00000676935.1:ENST00000435364.8:ENST00000464792.2:ENST00000678772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	69	2	3.30849	4.319775	5.33106	0.0383628	0.0148029	0.131324	0.0847481
chr16	78858235	78858335	6503001	0	+	0.36	(0.33,0.36]	chr16	645717	779	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	74	2	3.86561	4.31958	4.77355	0.0735809	0.00387524	0.17026	0.0362399
chr20	41559029	41559128	7564228	0	-	0.262626	[0,0.29]	chr20	790090	73	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	85	2	2.90933	4.31933	5.72933	0.0114163	0.00996568	0.0723519	0.0673647
chr15	64507656	64507756	6131411	0	+	0.4	(0.39,0.419]	chr15	603266	47	INTRON	INTRON	ZNF609	ENSG00000180357.10	ENST00000326648.5:ENST00000558680.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	69	2	3.22582	4.31918	5.41254	0.0347088	0.0176855	0.12648	0.093839
chr19	2204458	2204556	7188903	0	+	0.663265	(0.58,1]	chr19	731581	13	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	2	104	2	2.96176	4.31909	5.67642	0.0206169	0.00117039	0.0983493	0.0157899
chr18	35057426	35057525	7045102	0	+	0.444444	(0.419,0.45]	chr18	719361	153	INTRON	INTRON	MAPRE2	ENSG00000166974.13	ENST00000413393.5:ENST00000591734.5:ENST00000589180.5:ENST00000587359.5:ENST00000436190.6:ENST00000588349.6:ENST00000538170.6:ENST00000300249.10:ENST00000588910.5:ENST00000585592.1:ENST00000589699.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	91	2	3.28483	4.319	5.35317	0.038131	0.00714797	0.131324	0.0541241
chr2	87651726	87651826	849176	0	+	0.49	(0.485,0.523]	chr2	95792	151	INTRON	INTRON	ENSG00000284879	ENSG00000284879.1	ENST00000643276.1:ENST00000646855.1	lncRNA	lncRNA	lncRNA	lncRNA	1	66	2	3.46766	4.31889	5.17012	0.038581	0.0089247	0.131324	0.0620271
chr20	2845025	2845125	7417420	0	+	0.45	(0.419,0.45]	chr20	772627	38	INTRON	INTRON	VPS16	ENSG00000215305.10	ENST00000380469.7:ENST00000380445.8:ENST00000453689.5:ENST00000417508.1	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.15468	4.31889	5.4831	0.0345118	0.0211324	0.126025	0.103778
chr5	138347453	138347552	2543272	0	+	0.414141	(0.39,0.419]	chr5	252559	6	UTR3	UTR3:EXON_MRNA	FAM53C	ENSG00000120709.11	ENST00000239906.10	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.00168	4.318765	5.63585	0.0279244	0.025023	0.121102	0.10758
chr6	170397274	170397374	3076552	0	+	0.48	(0.45,0.485]	chr6	299192	13	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	1	82	2	2.61676	4.318725000000001	6.02069	0.0883035	0.00101549	0.183874	0.0143256
chr9	14837755	14837855	4280092	0	-	0.27	[0,0.29]	chr9	408973	124	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	74	2	2.92291	4.318675	5.71444	0.0470601	0.00157654	0.143232	0.0195664
chr19	34227988	34228088	7241878	0	+	0.23	[0,0.29]	chr19	741560	7	UTR3	UTR3:EXON_MRNA	LSM14A	ENSG00000257103.9	ENST00000544216.8:ENST00000540746.6:ENST00000433627.9:ENST00000588582.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	85	2	2.94196	4.318595	5.69523	0.010611	0.0105483	0.0697759	0.0692252
chr13	113506757	113506856	5658344	0	+	0.323232	(0.29,0.33]	chr13	555703	8	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000462877.5	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	2.71956	4.31841	5.91726	0.0442313	0.010702	0.153511	0.0701493
chr12	57112130	57112230	5439779	0	-	0.53	(0.523,0.58]	chr12	535339	8	INTRON	INTRON	STAT6	ENSG00000166888.12	ENST00000556155.5:ENST00000553499.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.13061	4.31827	4.50593	0.094303	0.0533354	0.188571	0.167062
chr15	98662971	98663071	6193473	0	+	0.58	(0.523,0.58]	chr15	609651	129	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.13061	4.31827	4.50593	0.094303	0.0533354	0.188571	0.167062
chr2	73089735	73089815	1189728	0	-	0.575	(0.523,0.58]	chr2	128943	2	SS3_PROX	SS3_PROX:INTRON	RAB11FIP5	ENSG00000135631.17	ENST00000258098.6:ENST00000486777.7:ENST00000475951.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.13061	4.31827	4.50593	0.094303	0.0533354	0.188571	0.167062
chr20	62049404	62049504	7583642	0	-	0.56	(0.523,0.58]	chr20	792369	343	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000252996.9:ENST00000608887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.13061	4.31827	4.50593	0.094303	0.0533354	0.188571	0.167062
chr21	45419159	45419259	7630454	0	+	0.53	(0.523,0.58]	chr21	797656	133	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.13061	4.31827	4.50593	0.094303	0.0533354	0.188571	0.167062
chr3	9769235	9769331	1682431	0	-	0.552083	(0.523,0.58]	chr3	175743	11	INTRON	INTRON	CAMK1	ENSG00000134072.11	ENST00000256460.8:ENST00000397277.6:ENST00000411972.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.13061	4.31827	4.50593	0.094303	0.0533354	0.188571	0.167062
chr9	112487618	112487717	4220188	0	+	0.535354	(0.523,0.58]	chr9	400302	1	INTRON	INTRON	KIAA1958	ENSG00000165185.15	ENST00000337530.11:ENST00000536272.5:ENST00000374244.3	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.13061	4.31827	4.50593	0.094303	0.0533354	0.188571	0.167062
chr9	134411601	134411700	4261549	0	+	0.565657	(0.523,0.58]	chr9	406352	21	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000481739.2:ENST00000356384.4:ENST00000672570.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.13061	4.31827	4.50593	0.094303	0.0533354	0.188571	0.167062
chr10	15149341	15149441	4636634	0	-	0.48	(0.45,0.485]	chr10	443033	74	INTRON	INTRON	NMT2	ENSG00000152465.18	ENST00000378165.9:ENST00000378150.1	protein_coding	protein_coding	protein_coding	protein_coding	1	82	2	3.03347	4.318225	5.60298	0.0489373	0.00292492	0.146035	0.029882
chr15	67101823	67101923	6139436	0	+	0.41	(0.39,0.419]	chr15	603944	24	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1:ENST00000559092.1:ENST00000560175.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	69	2	3.30655	4.31813	5.32971	0.0390381	0.0148983	0.131575	0.0847741
chr1	12582060	12582160	402423	0	-	0.42	(0.419,0.45]	chr1	46222	10	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	92	2	3.33075	4.318115000000001	5.30548	0.0356124	0.00792071	0.127588	0.057762
chr1	43598442	43598534	107437	0	+	0.695652	(0.58,1]	chr1	13245	5	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5:ENST00000496447.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	67	2	2.71042	4.31785	5.92528	0.0396128	0.0062948	0.143388	0.0523832
chr7	47354920	47355020	3587340	0	-	0.56	(0.523,0.58]	chr7	346030	82	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	3.01567	4.317715	5.61976	0.0482042	0.00236826	0.144601	0.0259199
chr16	12009337	12009436	6389946	0	+	0.313131	(0.29,0.33]	chr16	631884	59	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000569801.5:ENST00000564111.5:ENST00000568949.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.12201	4.31751	4.51301	0.0885563	0.0564091	0.183874	0.171933
chr18	69614490	69614589	7085320	0	+	0.313131	(0.29,0.33]	chr18	722127	146	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.12201	4.31751	4.51301	0.0885563	0.0564091	0.183874	0.171933
chr2	134143879	134143979	895669	0	+	0.44	(0.419,0.45]	chr2	101196	163	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	71	2	2.9727	4.31741	5.66212	0.0303302	0.0266819	0.126768	0.111563
chr1	52914730	52914830	485579	0	-	0.48	(0.45,0.485]	chr1	57727	2	SS5_PROX	SS5_PROX:INTRON	ECHDC2	ENSG00000121310.17	ENST00000536120.5:ENST00000371522.9:ENST00000460612.5:ENST00000371520.5:ENST00000358358.9:ENST00000476477.6:ENST00000467988.2:ENST00000488268.5:ENST00000544365.5:ENST00000495920.5:ENST00000544531.5:ENST00000480312.6:ENST00000542552.1:ENST00000474789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	336	2	4.24564	4.317114999999999	4.38859	0.00282182	2.46743e-4	0.0337022	0.00525815
chr10	79147268	79147368	4532829	0	+	0.51	(0.485,0.523]	chr10	432432	71	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.12717	4.316755	4.50634	0.0939553	0.0545434	0.188571	0.167824
chr12	1180239	1180339	5152176	0	+	0.49	(0.485,0.523]	chr12	500828	3	SS3_PROX	SS3_PROX:INTRON	ERC1	ENSG00000082805.21	ENST00000611180.5:ENST00000543086.7:ENST00000360905.9:ENST00000691018.1:ENST00000690948.1:ENST00000542302.6:ENST00000546231.6:ENST00000545318.3:ENST00000347735.10:ENST00000397203.7:ENST00000536573.7:ENST00000690222.1:ENST00000686476.1:ENST00000440394.7:ENST00000545948.5:ENST00000589028.6:ENST00000355446.9:ENST00000538971.6:ENST00000689995.1:ENST00000688324.1:ENST00000691177.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.12717	4.316755	4.50634	0.0939553	0.0545434	0.188571	0.167824
chr14	54628090	54628190	5820054	0	+	0.49	(0.485,0.523]	chr14	569049	596	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.12717	4.316755	4.50634	0.0939553	0.0545434	0.188571	0.167824
chr17	5412832	5412929	6844428	0	-	0.494845	(0.485,0.523]	chr17	692949	17	INTRON	INTRON	NUP88	ENSG00000108559.12	ENST00000573584.6:ENST00000225696.8:ENST00000574867.5:ENST00000572809.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.12717	4.316755	4.50634	0.0939553	0.0545434	0.188571	0.167824
chr2	63019847	63019947	817125	0	+	0.49	(0.485,0.523]	chr2	92205	227	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000496857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.12717	4.316755	4.50634	0.0939553	0.0545434	0.188571	0.167824
chr3	124664285	124664383	1554619	0	+	0.520408	(0.485,0.523]	chr3	164673	20	INTRON	INTRON	KALRN	ENSG00000160145.16	ENST00000682506.1:ENST00000683592.1:ENST00000360013.7:ENST00000354186.8:ENST00000684360.1:ENST00000393496.5:ENST00000682290.1:ENST00000291478.9:ENST00000682363.1:ENST00000459915.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.12717	4.316755	4.50634	0.0939553	0.0545434	0.188571	0.167824
chr4	56436828	56436926	2046035	0	+	0.510204	(0.485,0.523]	chr4	209256	1	INTRON	INTRON	PAICS	ENSG00000128050.9	ENST00000514888.5:ENST00000264221.6:ENST00000505164.5:ENST00000504188.1:ENST00000399688.7:ENST00000510584.1:ENST00000512576.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.12717	4.316755	4.50634	0.0939553	0.0545434	0.188571	0.167824
chr8	66857711	66857811	3838440	0	+	0.51	(0.485,0.523]	chr8	368518	64	INTRON	INTRON	SGK3	ENSG00000104205.16	ENST00000521198.7:ENST00000396596.2:ENST00000522398.5:ENST00000520976.5:ENST00000345714.8	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.12717	4.316755	4.50634	0.0939553	0.0545434	0.188571	0.167824
chr3	71171049	71171149	1827135	0	-	0.33	(0.29,0.33]	chr3	188150	390	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648426.1:ENST00000498215.7:ENST00000484350.5:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000468577.6:ENST00000649513.1:ENST00000649431.2:ENST00000647614.1:ENST00000649760.1:ENST00000650295.1:ENST00000648895.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	89	2	3.03931	4.316685	5.59406	0.0184845	0.00915988	0.0928429	0.0634011
chr1	8552983	8553082	393076	0	-	0.555556	(0.523,0.58]	chr1	45029	113	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000469251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	173	2	3.90397	4.316405	4.72884	0.0110124	2.96905e-4	0.0708586	0.00603096
chr1	43561416	43561515	107053	0	+	0.515152	(0.485,0.523]	chr1	13192	71	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	176	2	4.19778	4.316	4.43422	0.00640798	7.18351e-4	0.0529785	0.0112783
chr17	82717396	82717487	6818051	0	+	0.593407	(0.58,1]	chr17	689119	1	INTRON	INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	75	2	3.3216	4.31598	5.31036	0.0230709	0.00312721	0.102982	0.0311915
chr19	5818689	5818788	7195573	0	+	0.686869	(0.58,1]	chr19	733105	129	INTRON	INTRON	NRTN	ENSG00000171119.3	ENST00000303212.3	protein_coding	protein_coding	protein_coding	protein_coding	2	81	2	2.86246	4.3159	5.76934	0.0112778	0.00849371	0.0717097	0.0617717
chr1	31577610	31577686	81019	0	+	0.473684	(0.45,0.485]	chr1	9274	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	LINC01226:TINAGL1	ENSG00000284543.1:ENSG00000142910.16	ENST00000639839.1:ENST00000640226.1:ENST00000457433.6:ENST00000271064.12:ENST00000461030.5:ENST00000466998.1:ENST00000478398.5:ENST00000481165.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	1	77	2	2.49029	4.31574	6.14119	0.0676934	0.00917101	0.193219	0.064285
chr4	143337859	143337959	2136950	0	+	0.61	(0.58,1]	chr4	217046	2	INTRON	INTRON	GAB1	ENSG00000109458.9	ENST00000262995.8:ENST00000262994.9:ENST00000514639.5	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.03676	4.315615	5.59447	0.0198789	0.0117666	0.100864	0.0737098
chr1	45636421	45636521	467726	0	-	0.4	(0.39,0.419]	chr1	55928	8	INTRON	INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.14029	4.315585	5.49088	0.0309972	0.0211243	0.119758	0.103778
chr6	128134863	128134962	3253302	0	-	0.434343	(0.419,0.45]	chr6	315160	445	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000531050.5:ENST00000524534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	86	2	2.94439	4.315575	5.68676	0.062072	0.00338051	0.15958	0.0328791
chr17	55313528	55313628	6757599	0	+	0.43	(0.419,0.45]	chr17	681718	242	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	317	2	3.78242	4.315564999999999	4.84871	0.00283817	9.79084e-4	0.033773	0.0140266
chr19	41327432	41327532	7381073	0	-	0.71	(0.58,1]	chr19	765964	244	INTRON	INTRON	TGFB1	ENSG00000105329.11	ENST00000598758.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	61	2	3.56821	4.314455	5.0607	0.029633	0.00550024	0.116079	0.0454065
chr7	47477505	47477605	3588583	0	-	0.52	(0.485,0.523]	chr7	346123	244	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	2.97038	4.314145	5.65791	0.0267011	0.0181582	0.118343	0.0921579
chr13	112971550	112971649	5655336	0	+	0.383838	(0.36,0.39]	chr13	555120	17	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	2.73813	4.3138749999999995	5.88962	0.0459393	0.0166261	0.154743	0.0884836
chr16	3871253	3871353	6539849	0	-	0.62	(0.58,1]	chr16	650426	199	INTRON	INTRON	CREBBP	ENSG00000005339.15	ENST00000262367.10:ENST00000382070.7	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.1491	4.313745	5.47839	0.0154006	0.0145198	0.0869771	0.0823104
chr7	1938392	1938492	3529608	0	-	0.4	(0.39,0.419]	chr7	340962	11	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000450235.5:ENST00000437877.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	73	2	3.74353	4.313594999999999	4.88366	0.0707789	0.00554536	0.168159	0.0456911
chr6	75638492	75638592	2940526	0	+	0.37	(0.36,0.39]	chr6	289313	33	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000483859.6:ENST00000424947.6	protein_coding	protein_coding	protein_coding	protein_coding	3	112	2	2.42554	4.313195	6.20085	0.0257828	0.0100561	0.116361	0.0677306
chr12	132533067	132533166	5352946	0	+	0.636364	(0.58,1]	chr12	523670	47	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	2.9908	4.313115	5.63543	0.0409591	0.00131165	0.136191	0.0171898
chr3	42215509	42215608	1451706	0	+	0.444444	(0.419,0.45]	chr3	154959	30	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2:ENST00000327628.10:ENST00000396175.5	protein_coding	protein_coding	protein_coding	protein_coding	2	98	2	2.38853	4.31304	6.23755	0.0427256	0.0110181	0.15001	0.0708586
chr19	17483781	17483881	7220770	0	+	0.61	(0.58,1]	chr19	738261	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SLC27A1	ENSG00000130304.17	ENST00000600277.5:ENST00000598424.5:ENST00000252595.12:ENST00000599380.5:ENST00000600297.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	79	2	3.5406	4.31297	5.08534	0.0154024	0.00549379	0.0849828	0.0454065
chr17	55306245	55306344	6757526	0	+	0.474747	(0.45,0.485]	chr17	681718	169	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	108	2	2.48439	4.31279	6.14119	0.0210032	0.00917101	0.103258	0.064285
chr8	17567316	17567415	3763720	0	+	0.353535	(0.33,0.36]	chr8	361565	23	UTR3	UTR3:EXON_MRNA	SLC7A2	ENSG00000003989.18	ENST00000494857.6:ENST00000470360.5:ENST00000004531.14:ENST00000398090.3	protein_coding	protein_coding	protein_coding	protein_coding	3	115	2	2.12031	4.31274	6.50517	0.0467883	0.0050376	0.156817	0.0464868
chr10	42593606	42593705	4674952	0	-	0.383838	(0.36,0.39]	chr10	445874	10	CDS	CDS:EXON_MRNA:INTRON	ZNF33B	ENSG00000196693.15	ENST00000462075.1:ENST00000486187.5:ENST00000465206.5:ENST00000613419.4:ENST00000359467.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	114	2	2.8562	4.312565	5.76893	0.0200694	0.00978717	0.0971995	0.0664239
chr8	100714961	100715061	4029362	0	-	0.34	(0.33,0.36]	chr8	384713	1	SS5_PROX	SS5_PROX:INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000519596.5:ENST00000519622.5:ENST00000517921.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	92	2	3.04879	4.312565	5.57634	0.0237329	0.00978051	0.10525	0.0664239
chr7	6700914	6701012	3542722	0	-	0.346939	(0.33,0.36]	chr7	342318	1	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	2	91	2	2.878	4.3124649999999995	5.74693	0.0181681	0.0144892	0.0921579	0.0834873
chr16	48298661	48298761	6445908	0	+	0.29	[0,0.29]	chr16	639328	21	INTRON	INTRON	LONP2	ENSG00000102910.14	ENST00000285737.9:ENST00000535754.5:ENST00000416006.7:ENST00000566755.5:ENST00000570174.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	68	2	3.86771	4.31199	4.75627	0.050276	0.00299961	0.148161	0.030427
chr13	97368750	97368850	5632279	0	+	0.41	(0.39,0.419]	chr13	553226	18	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000449284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	491	2	4.01954	4.311805	4.60407	0.0051559	5.61707e-5	0.0472247	0.00178735
chr1	20775585	20775654	414137	0	-	0.449275	(0.419,0.45]	chr1	48421	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000419948.5:ENST00000424732.5:ENST00000417710.5:ENST00000487117.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	362	2	4.18762	4.31161	4.4356	0.00423464	3.02349e-4	0.0422099	0.00611051
chr17	7111059	7111157	6847744	0	-	0.377551	(0.36,0.39]	chr17	693423	18	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	117	2	2.65651	4.31152	5.96653	0.0499257	0.00155347	0.147655	0.0193429
chr16	89301636	89301736	6659825	0	-	0.63	(0.58,1]	chr16	666656	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	152	2	3.77454	4.3114550000000005	4.84837	0.00981158	1.2454e-4	0.0668871	0.00322977
chr19	38649159	38649259	7257855	0	+	0.61	(0.58,1]	chr19	743980	5	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	87	2	2.37998	4.311215	6.24245	0.0345705	0.00334087	0.135397	0.0368376
chr6	144347999	144348099	3020490	0	+	0.46	(0.45,0.485]	chr6	295148	33	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1:ENST00000628146.2:ENST00000421035.2	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	2.87326	4.311195	5.74913	0.033576	0.017574	0.133139	0.0906595
chr20	34568239	34568339	7547110	0	-	0.56	(0.523,0.58]	chr20	787854	69	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.229	4.311135	5.39327	0.0277354	0.0152072	0.112851	0.0861813
chr18	36254473	36254573	7049267	0	+	0.43	(0.419,0.45]	chr18	719791	28	INTRON	INTRON	MOCOS	ENSG00000075643.6	ENST00000261326.6	protein_coding	protein_coding	protein_coding	protein_coding	2	108	2	3.58175	4.31109	5.04043	0.0625897	0.00296557	0.160305	0.0301816
chr6	142326820	142326920	3012126	0	+	0.29	[0,0.29]	chr6	294688	168	INTRON	INTRON	ADGRG6	ENSG00000112414.15	ENST00000230173.10:ENST00000367608.6:ENST00000415128.6:ENST00000296932.13:ENST00000367609.8:ENST00000541199.5:ENST00000545477.1:ENST00000435011.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	63	2	3.3667	4.31072	5.25474	0.02298	0.0105013	0.102982	0.0689526
chr7	107514237	107514337	3676170	0	-	0.27	[0,0.29]	chr7	354238	334	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	77	2	2.4797	4.310695	6.14169	0.0920821	4.88624e-4	0.188571	0.00860857
chr15	74786177	74786275	6152444	0	+	0.530612	(0.523,0.58]	chr15	605155	31	INTRON	INTRON	CSK	ENSG00000103653.17	ENST00000220003.14:ENST00000439220.6:ENST00000563894.1:ENST00000567123.1:ENST00000569462.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	66	2	3.03457	4.310685	5.5868	0.0231444	0.020474	0.109883	0.0979776
chr16	14935521	14935621	6403001	0	+	0.66	(0.58,1]	chr16	632665	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PKD1P3:NPIPA1	ENSG00000183458.14:ENSG00000183426.17	ENST00000534164.6:ENST00000472413.5:ENST00000541836.5	protein_coding	processed_transcript	protein_coding:transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	7	146	2	1.91603	4.31067	6.70531	0.0304049	0.00125905	0.126768	0.0215793
chr17	17824305	17824405	6865766	0	-	0.59	(0.58,1]	chr17	695923	3	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	3.02751	4.310375	5.59324	0.0385189	0.0014734	0.131324	0.0185589
chr9	33138917	33139017	4293302	0	-	0.61	(0.58,1]	chr9	410135	31	INTRON	INTRON	B4GALT1	ENSG00000086062.13	ENST00000535206.5:ENST00000379731.5	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	3.02751	4.310375	5.59324	0.0385189	0.0014734	0.131324	0.0185589
chr1	61383665	61383765	149130	0	+	0.49	(0.485,0.523]	chr1	17201	3	SS5_PROX	SS5_PROX:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1:ENST00000657234.1:ENST00000655770.1:ENST00000482020.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	79	2	2.81545	4.3103	5.80515	0.0647139	0.00153111	0.162218	0.0191213
chr3	61810982	61811082	1489111	0	+	0.54	(0.523,0.58]	chr3	160092	397	INTRON	INTRON	PTPRG	ENSG00000144724.20	ENST00000474889.6:ENST00000295874.14	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.65844	4.310205	4.96197	0.0521137	0.00554418	0.148503	0.0456911
chr11	118630482	118630582	4948504	0	+	0.53	(0.523,0.58]	chr11	477793	4	SS5_PROX	SS5_PROX:INTRON	PHLDB1	ENSG00000019144.20	ENST00000361417.6:ENST00000530994.5:ENST00000600882.6:ENST00000528594.5:ENST00000621027.4:ENST00000356063.9:ENST00000532517.5:ENST00000614369.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	79	2	2.77655	4.31014	5.84373	0.0685533	0.00133116	0.165066	0.0173248
chr2	152590745	152590844	928026	0	+	0.292929	(0.29,0.33]	chr2	103106	93	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14:ENST00000492942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	67	2	3.59602	4.309985	5.02395	0.0445554	0.00672736	0.140478	0.0519464
chr6	56470693	56470782	3152304	0	-	0.325843	(0.29,0.33]	chr6	307484	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DST	ENSG00000151914.22	ENST00000244364.10:ENST00000312431.10:ENST00000421834.6:ENST00000680361.1:ENST00000370788.6:ENST00000520645.6:ENST00000651941.1:ENST00000651790.1:ENST00000651289.1:ENST00000651457.1:ENST00000340834.10:ENST00000361203.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	67	2	3.59602	4.309985	5.02395	0.0445554	0.00672736	0.140478	0.0519464
chr17	43543379	43543479	6909602	0	-	0.56	(0.523,0.58]	chr17	703272	1	SS5_PROX	SS5_PROX:INTRON	ETV4	ENSG00000175832.13	ENST00000538265.5:ENST00000319349.10:ENST00000393664.6:ENST00000545954.5:ENST00000545089.5:ENST00000591713.5:ENST00000590236.5:ENST00000585508.5:ENST00000587151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	416	2	3.2645	4.309455	5.35441	0.00102115	6.60326e-4	0.0151018	0.0143549
chr9	134342229	134342328	4260845	0	+	0.686869	(0.58,1]	chr9	406311	152	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	68	2	2.63525	4.309235	5.98322	0.0459151	0.00562007	0.154743	0.0493906
chr10	103687938	103688038	4756975	0	-	0.46	(0.45,0.485]	chr10	454779	99	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	90	2	2.65944	4.30894	5.95844	0.022472	0.0124835	0.108193	0.0761905
chr5	140706314	140706407	2553293	0	+	0.526882	(0.523,0.58]	chr5	253724	7	UTR3	UTR3:EXON_MRNA	ZMAT2	ENSG00000146007.11	ENST00000274712.8	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.4003	4.308785	5.21727	0.0361597	0.0103016	0.127853	0.0678983
chr7	47377215	47377314	3587564	0	-	0.545455	(0.523,0.58]	chr7	346036	72	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	108	2	2.33029	4.30854	6.28679	0.0735053	3.97355e-4	0.17026	0.00741985
chr17	38403499	38403599	6729061	0	+	0.53	(0.523,0.58]	chr17	676274	41	UTR3	UTR3:EXON_MRNA	SOCS7	ENSG00000274211.6	ENST00000612932.6:ENST00000665913.1	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.18279	4.308450000000001	5.43411	0.026041	0.0168396	0.109673	0.0919482
chr7	143386486	143386583	3510770	0	+	0.536082	(0.523,0.58]	chr7	338486	19	INTRON	INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	65	2	3.18279	4.308450000000001	5.43411	0.026041	0.0168396	0.109673	0.0919482
chr9	134375523	134375622	4261180	0	+	0.616162	(0.58,1]	chr9	406321	10	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2:ENST00000356384.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	63	2	2.91493	4.30842	5.70191	0.0259506	0.00964351	0.116361	0.0659937
chr5	81134251	81134351	2469999	0	+	0.35	(0.33,0.36]	chr5	246654	67	INTRON	INTRON	RASGRF2	ENSG00000113319.13	ENST00000265080.9:ENST00000503795.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	71	2	3.72192	4.3083	4.89468	0.0629186	0.00550077	0.160778	0.0454065
chr17	76333929	76334028	6975353	0	-	0.555556	(0.523,0.58]	chr17	712036	11	INTRON	INTRON	PRPSAP1	ENSG00000161542.17	ENST00000446526.8:ENST00000324684.8:ENST00000435555.6:ENST00000436498.6:ENST00000494662.5:ENST00000423915.1:ENST00000442767.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	79	2	2.918	4.3081700000000005	5.69834	0.0558053	0.00194036	0.154188	0.0225083
chr13	75390390	75390490	5727088	0	-	0.4	(0.39,0.419]	chr13	561722	132	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	2.84832	4.307945	5.76757	0.0375279	0.0204917	0.139823	0.0979776
chr1	236844272	236844371	366308	0	+	0.40404	(0.39,0.419]	chr1	41482	53	INTRON	INTRON	MTR	ENSG00000116984.15	ENST00000680454.1:ENST00000366577.10:ENST00000674797.2:ENST00000679569.1:ENST00000650888.1:ENST00000463959.1:ENST00000535889.6:ENST00000651455.1:ENST00000681102.1:ENST00000679842.1:ENST00000681177.1:ENST00000681937.1:ENST00000366576.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	69	2	3.41977	4.30778	5.19579	0.0469937	0.0116434	0.143232	0.0736274
chr8	80147848	80147948	4005867	0	-	0.39	(0.36,0.39]	chr8	382863	276	INTRON	INTRON	TPD52	ENSG00000076554.16	ENST00000518937.6:ENST00000379096.9:ENST00000519303.6:ENST00000521354.5:ENST00000518517.5:ENST00000521241.6:ENST00000523753.5:ENST00000519250.5:ENST00000520795.5:ENST00000521561.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	95	2	2.46174	4.30758	6.15342	0.0361885	0.0108737	0.139793	0.0707085
chr10	44968664	44968764	4483215	0	+	0.59	(0.58,1]	chr10	428600	84	INTRON	INTRON	RASSF4	ENSG00000107551.21	ENST00000489171.5:ENST00000340258.10:ENST00000427758.5:ENST00000483709.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	72	2	2.74846	4.306995	5.86553	0.0605281	6.8352e-4	0.158506	0.0108717
chr1	43984270	43984364	111005	0	+	0.542553	(0.523,0.58]	chr1	13827	10	INTRON	INTRON	B4GALT2	ENSG00000117411.18	ENST00000434555.7:ENST00000372324.6:ENST00000481924.2:ENST00000497866.6:ENST00000485678.6:ENST00000356836.10:ENST00000309519.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	80	2	3.0773	4.3069749999999996	5.53665	0.0438724	0.00291382	0.139792	0.0298557
chr20	4966894	4966994	7518229	0	-	0.45	(0.419,0.45]	chr20	784900	338	INTRON	INTRON	SLC23A2	ENSG00000089057.15	ENST00000379333.5:ENST00000338244.6:ENST00000468355.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	70	2	3.02039	4.30677	5.59315	0.029494	0.0276403	0.120359	0.116079
chr20	31607340	31607440	7453516	0	+	0.56	(0.523,0.58]	chr20	775786	2	PRIMIRNA	PRIMIRNA	MIR3193	ENSG00000264395.1	ENST00000578262.1	miRNA	primary_miRNA	miRNA	primary_miRNA	2	137	2	3.41219	4.306615	5.20104	0.0123141	0.00648051	0.075641	0.0503748
chr11	585664	585763	4784873	0	+	0.464646	(0.45,0.485]	chr11	457988	32	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	0	30	2	4.11446	4.30616	4.49786	0.101311	0.0592571	0.196131	0.176157
chr11	74040861	74040960	5077327	0	-	0.484848	(0.45,0.485]	chr11	493926	20	EXON_MRNA	EXON_MRNA:INTRON	C2CD3	ENSG00000168014.18	ENST00000334126.12:ENST00000442398.7:ENST00000680231.1:ENST00000680839.1:ENST00000681609.1:ENST00000681291.1:ENST00000681924.1:ENST00000680665.1:ENST00000538625.2:ENST00000681385.1:ENST00000681811.1:ENST00000681143.1:ENST00000679415.1:ENST00000679906.1:ENST00000681829.1:ENST00000681310.1:ENST00000313663.11:ENST00000414160.7:ENST00000538361.2:ENST00000681233.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	0	30	2	4.11446	4.30616	4.49786	0.101311	0.0592571	0.196131	0.176157
chr11	93478740	93478829	5106405	0	-	0.47191	(0.45,0.485]	chr11	496073	4	UTR3	UTR3:EXON_MRNA	SMCO4	ENSG00000166002.7	ENST00000298966.7:ENST00000525141.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.11446	4.30616	4.49786	0.101311	0.0592571	0.196131	0.176157
chr18	77120617	77120717	7181527	0	-	0.48	(0.45,0.485]	chr18	730186	150	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1:ENST00000583798.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.11446	4.30616	4.49786	0.101311	0.0592571	0.196131	0.176157
chr22	25460258	25460353	7701145	0	+	0.463158	(0.45,0.485]	chr22	805971	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000382734.10:ENST00000686640.1:ENST00000509460.3:ENST00000354451.6:ENST00000609084.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	0	30	2	4.11446	4.30616	4.49786	0.101311	0.0592571	0.196131	0.176157
chr3	17213006	17213106	1699474	0	-	0.48	(0.45,0.485]	chr3	177626	274	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000429924.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	0	30	2	4.11446	4.30616	4.49786	0.101311	0.0592571	0.196131	0.176157
chr8	11783103	11783202	3760204	0	+	0.474747	(0.45,0.485]	chr8	361116	6	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NEIL2	ENSG00000154328.16	ENST00000436750.7:ENST00000455213.6:ENST00000403422.7:ENST00000284503.7:ENST00000528323.5:ENST00000528113.5:ENST00000524741.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	0	30	2	4.11446	4.30616	4.49786	0.101311	0.0592571	0.196131	0.176157
chr9	17185739	17185839	4125746	0	+	0.48	(0.45,0.485]	chr9	392346	173	INTRON	INTRON	CNTLN	ENSG00000044459.15	ENST00000380647.8:ENST00000380641.4	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.11446	4.30616	4.49786	0.101311	0.0592571	0.196131	0.176157
chrX	9525893	9525993	7843054	0	+	0.47	(0.45,0.485]	chrX	822404	237	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.11446	4.30616	4.49786	0.101311	0.0592571	0.196131	0.176157
chr12	57151932	57152030	5240639	0	+	0.632653	(0.58,1]	chr12	510200	20	INTRON	INTRON	LRP1	ENSG00000123384.14	ENST00000243077.8:ENST00000554174.1	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.09402	4.306075	5.51813	0.0174733	0.013519	0.0928044	0.0792526
chr16	492560	492659	6367462	0	+	0.585859	(0.58,1]	chr16	627798	9	INTRON	INTRON	RAB11FIP3	ENSG00000090565.17	ENST00000262305.9:ENST00000434585.5:ENST00000450428.5:ENST00000452814.5:ENST00000449879.6:ENST00000412256.1:ENST00000495663.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	61	2	3.09402	4.306075	5.51813	0.0174733	0.013519	0.0928044	0.0792526
chr8	43100141	43100238	3811231	0	+	0.639175	(0.58,1]	chr8	367066	9	INTRON	INTRON	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000331373.10:ENST00000674727.1:ENST00000518991.6:ENST00000676163.1:ENST00000675129.1:ENST00000675791.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	60	2	3.35051	4.3059449999999995	5.26138	0.021217	0.00953058	0.0996078	0.0650078
chr17	40456678	40456773	6734721	0	+	0.6	(0.58,1]	chr17	677411	2	UTR3	UTR3:EXON_MRNA	IGFBP4	ENSG00000141753.7	ENST00000269593.5	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.72143	4.30544	4.88945	0.0388928	0.00366718	0.131324	0.0346803
chr15	84770102	84770201	6174198	0	+	0.454545	(0.45,0.485]	chr15	607320	49	INTRON	INTRON	ZNF592	ENSG00000166716.10	ENST00000560079.7	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.03233	4.305435	5.57854	0.0244076	0.0230065	0.113311	0.102982
chr14	103685548	103685637	5924691	0	+	0.516854	(0.485,0.523]	chr14	579657	7	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000334553.11:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8:ENST00000537046.6:ENST00000553325.5:ENST00000555856.1:ENST00000535194.2:ENST00000553680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	66	2	3.02337	4.3053	5.58723	0.023933	0.0203514	0.111785	0.0979211
chr7	1023204	1023304	3526455	0	-	0.63	(0.58,1]	chr7	340572	127	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	3.39676	4.305265	5.21377	0.0230012	0.0085026	0.102982	0.0608246
chr16	50610956	50611056	6452037	0	+	0.68	(0.58,1]	chr16	639908	22	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	3.30273	4.3051	5.30747	0.0196049	0.0107069	0.0955413	0.0700635
chr19	2441616	2441715	7309602	0	-	0.616162	(0.58,1]	chr19	753890	27	INTRON	INTRON	LMNB2	ENSG00000176619.13	ENST00000325327.4	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.30273	4.3051	5.30747	0.0196049	0.0107069	0.0955413	0.0700635
chr2	238352035	238352132	1073449	0	+	0.597938	(0.58,1]	chr2	116386	23	INTRON	INTRON	TRAF3IP1	ENSG00000204104.12	ENST00000391993.7:ENST00000373327.5:ENST00000462122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	60	2	3.30273	4.3051	5.30747	0.0196049	0.0107069	0.0955413	0.0700635
chr10	75710657	75710757	4523270	0	+	0.51	(0.485,0.523]	chr10	432271	627	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	79	2	2.70247	4.30508	5.90769	0.0759932	0.0011708	0.174411	0.0157899
chr7	101936917	101937017	3435182	0	+	0.52	(0.485,0.523]	chr7	332524	39	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	67	2	3.6472	4.304795	4.96239	0.0518747	0.00579534	0.148503	0.0472203
chr11	68463422	68463522	4883507	0	+	0.34	(0.33,0.36]	chr11	470696	22	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	70	2	2.83079	4.3047699999999995	5.77875	0.0376711	0.0172683	0.140049	0.0897247
chr6	2244520	2244620	3085329	0	-	0.55	(0.523,0.58]	chr6	299526	687	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5	protein_coding	protein_coding	protein_coding	protein_coding	2	88	2	2.64274	4.30474	5.96674	0.0221922	0.0109075	0.108193	0.0707085
chr20	8454547	8454647	7429813	0	+	0.48	(0.45,0.485]	chr20	773698	825	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	243	2	3.60288	4.30363	5.00438	0.00942246	1.54619e-4	0.0653692	0.00376396
chr1	93541556	93541653	186561	0	+	0.484536	(0.45,0.485]	chr1	20220	1	INTRON	INTRON	FNBP1L	ENSG00000137942.18	ENST00000271234.13:ENST00000260506.12:ENST00000370253.6:ENST00000424449.2	protein_coding	protein_coding	protein_coding	protein_coding	1	103	2	3.86009	4.30325	4.74641	0.0193126	0.0128104	0.0994526	0.0770178
chr16	83920663	83920762	6513131	0	+	0.393939	(0.39,0.419]	chr16	646141	53	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	70	2	3.55811	4.3031299999999995	5.04815	0.0572698	0.00853617	0.154343	0.0610387
chr2	20599560	20599660	1098480	0	-	0.36	(0.33,0.36]	chr2	119827	9	INTRON	INTRON	HS1BP3	ENSG00000118960.13	ENST00000446825.1:ENST00000415264.5	protein_coding	protein_coding	protein_coding	protein_coding	1	92	2	3.54665	4.3030100000000004	5.05937	0.0221637	0.0112642	0.101811	0.071709
chr2	10303177	10303277	718426	0	+	0.72	(0.58,1]	chr2	84012	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	2.71042	4.3029150000000005	5.89541	0.0396128	0.0066708	0.143388	0.0540577
chr1	24557268	24557368	62452	0	+	0.48	(0.45,0.485]	chr1	6701	7	INTRON	INTRON	NCMAP	ENSG00000184454.7	ENST00000374392.3	protein_coding	protein_coding	protein_coding	protein_coding	1	134	2	4.22352	4.302905	4.38229	0.0496712	0.00500791	0.160725	0.0464177
chr7	217458	217557	3305829	0	+	0.616162	(0.58,1]	chr7	320161	81	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	2	150	2	3.87867	4.30279	4.72691	0.00797934	1.84649e-4	0.0596361	0.0042795
chr17	38728795	38728895	6729371	0	+	0.57	(0.523,0.58]	chr17	676371	33	UTR3	UTR3:EXON_MRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5	protein_coding	protein_coding	protein_coding	protein_coding	10	599	2	3.68997	4.302285	4.9146	6.47432e-4	2.46436e-4	0.0149631	0.00525243
chr7	47362288	47362387	3587414	0	-	0.59596	(0.58,1]	chr7	346030	156	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	2.7038	4.302175	5.90055	0.0648563	6.1741e-4	0.162218	0.0101143
chr17	77355397	77355496	6803913	0	+	0.575758	(0.523,0.58]	chr17	686742	312	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	66	2	2.98158	4.30208	5.62258	0.0258432	0.0193313	0.116361	0.0954446
chr2	235552132	235552232	1063119	0	+	0.56	(0.523,0.58]	chr2	115656	272	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	66	2	2.98158	4.30208	5.62258	0.0258432	0.0193313	0.116361	0.0954446
chr22	21447923	21448021	7689841	0	+	0.55102	(0.523,0.58]	chr22	804733	13	UTR3	UTR3:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	2.98158	4.30208	5.62258	0.0258432	0.0193313	0.116361	0.0954446
chr11	68472106	68472206	4883594	0	+	0.44	(0.419,0.45]	chr11	470696	109	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	94	2	2.61235	4.302075	5.9918	0.0274539	0.0162379	0.119733	0.0873195
chr9	124710507	124710607	4404750	0	-	0.41	(0.39,0.419]	chr9	419893	1148	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.45562	4.301925	5.14823	0.0501234	0.0107538	0.147892	0.0702857
chr6	138469243	138469342	3273833	0	-	0.484848	(0.45,0.485]	chr6	316903	217	INTRON	INTRON	NHSL1	ENSG00000135540.12	ENST00000427025.6:ENST00000343505.10:ENST00000342260.9:ENST00000426841.6:ENST00000491526.6:ENST00000533765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	98	2	3.49145	4.301875	5.1123	0.0458344	0.00304799	0.142336	0.0307059
chr9	14791852	14791950	4279621	0	-	0.581633	(0.58,1]	chr9	408901	24	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7:ENST00000466679.1:ENST00000497634.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	82	2	2.6194	4.30131	5.98322	0.0202577	0.00562007	0.102015	0.0493906
chr22	40626790	40626889	7815559	0	-	0.515152	(0.485,0.523]	chr22	819508	317	INTRON	INTRON	MRTFA	ENSG00000196588.21	ENST00000651595.2:ENST00000396617.7:ENST00000355630.10:ENST00000402042.7:ENST00000463769.7:ENST00000650658.1:ENST00000466278.1:ENST00000651158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	79	2	2.98607	4.30113	5.61619	0.0503063	0.00247695	0.148176	0.0266492
chr17	72559320	72559420	6963904	0	-	0.58	(0.523,0.58]	chr17	710389	249	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	69	2	3.8181	4.3009699999999995	4.78384	0.0663135	0.0037097	0.162385	0.0349741
chr15	99602109	99602209	6198702	0	+	0.43	(0.419,0.45]	chr15	609962	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MEF2A	ENSG00000068305.18	ENST00000560493.5:ENST00000354410.9:ENST00000558812.5:ENST00000558856.5:ENST00000685785.1:ENST00000559036.5:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000558049.5:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1:ENST00000559903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	69	2	3.23773	4.30084	5.36395	0.0407485	0.0178095	0.135868	0.0943752
chr1	90021322	90021422	182134	0	+	0.31	(0.29,0.33]	chr1	19653	4	SS5_PROX	SS5_PROX:INTRON	ZNF326	ENSG00000162664.17	ENST00000340281.9:ENST00000394583.7:ENST00000370447.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	65	2	3.33112	4.3008299999999995	5.27054	0.0308815	0.0124843	0.119556	0.0765738
chr7	44522342	44522442	3585217	0	-	0.46	(0.45,0.485]	chr7	345622	1	SS3_PROX	SS3_PROX:INTRON	NPC1L1	ENSG00000015520.15	ENST00000381160.8:ENST00000289547.8:ENST00000546276.5	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	3.1756	4.3007349999999995	5.42587	0.0290571	0.0180699	0.116079	0.0953579
chr17	77483530	77483629	6805217	0	+	0.666667	(0.58,1]	chr17	686820	13	EXON_MRNA	EXON_MRNA:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	80	2	2.97017	4.300675	5.63118	0.0109983	0.00858469	0.0708586	0.0612699
chr19	41905261	41905361	7264277	0	+	0.65	(0.58,1]	chr19	745340	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ARHGEF1	ENSG00000076928.18	ENST00000600274.5:ENST00000354532.8:ENST00000599846.5:ENST00000347545.8:ENST00000378152.8:ENST00000337665.8:ENST00000599589.5:ENST00000595897.5:ENST00000595723.5:ENST00000600517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	151	2	3.75278	4.300575	4.84837	0.01024	1.2454e-4	0.0684871	0.00322977
chr20	8181258	8181358	7427072	0	+	0.31	(0.29,0.33]	chr20	773674	305	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	181	2	4.13733	4.300505	4.46368	0.00357177	0.00169244	0.0383449	0.0204799
chr1	43977695	43977790	110935	0	+	0.473684	(0.45,0.485]	chr1	13794	4	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATP6V0B	ENSG00000117410.14	ENST00000532642.5:ENST00000236067.8:ENST00000471859.6:ENST00000472174.7:ENST00000468183.5:ENST00000473485.5:ENST00000498664.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	69	2	3.70282	4.299835	4.89685	0.0614781	0.00539085	0.158506	0.0450882
chr13	20974000	20974096	5664912	0	-	0.385417	(0.36,0.39]	chr13	556399	11	UTR3	UTR3:EXON_MRNA	LATS2	ENSG00000150457.9	ENST00000382592.5	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.18563	4.299765	5.4139	0.0340874	0.0191961	0.125059	0.0994526
chr2	239337092	239337192	1392081	0	-	0.38	(0.36,0.39]	chr2	148752	126	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	68	2	3.18563	4.299765	5.4139	0.0340874	0.0191961	0.125059	0.0994526
chr6	53803514	53803613	2927666	0	+	0.363636	(0.36,0.39]	chr6	288340	77	INTRON	INTRON	LRRC1	ENSG00000137269.15	ENST00000487251.5:ENST00000370888.6:ENST00000370882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	114	2	2.48618	4.299655	6.11313	0.0641588	0.00107374	0.161669	0.0148869
chr4	4439808	4439908	2184989	0	-	0.55	(0.523,0.58]	chr4	221823	9	INTRON	INTRON	STX18	ENSG00000168818.10	ENST00000505286.5:ENST00000306200.7:ENST00000503861.5:ENST00000512195.5:ENST00000507908.5:ENST00000512780.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	68	2	2.80981	4.299525	5.78924	0.0364868	0.0147166	0.139793	0.0826843
chr17	6691899	6691991	6845988	0	-	0.467391	(0.45,0.485]	chr17	693296	6	INTRON	INTRON	SLC13A5	ENSG00000141485.17	ENST00000433363.7:ENST00000293800.10:ENST00000381074.8:ENST00000573648.5:ENST00000572727.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	119	2	1.89565	4.2992300000000006	6.70281	0.069925	0.00338129	0.195209	0.0371948
chr14	103499769	103499865	5923284	0	+	0.572917	(0.523,0.58]	chr14	579479	10	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_PROX:INTRON	MARK3	ENSG00000075413.19	ENST00000678179.1:ENST00000676838.1:ENST00000677348.1:ENST00000677404.1:ENST00000676694.1:ENST00000676938.1:ENST00000678619.1:ENST00000676897.1:ENST00000677214.1:ENST00000677942.1:ENST00000676830.1:ENST00000678999.1:ENST00000677228.1:ENST00000556744.2:ENST00000677104.1:ENST00000679330.1:ENST00000560417.6:ENST00000440884.7:ENST00000677035.1:ENST00000678022.1:ENST00000677560.1:ENST00000561314.6:ENST00000429436.7:ENST00000677118.1:ENST00000676564.1:ENST00000678169.1:ENST00000678175.1:ENST00000678897.1:ENST00000678278.1:ENST00000676645.1:ENST00000677829.1:ENST00000678302.1:ENST00000677133.1:ENST00000678207.1:ENST00000677360.1:ENST00000676905.1:ENST00000678343.1:ENST00000677347.1:ENST00000678071.1:ENST00000677432.1:ENST00000678237.1:ENST00000677604.1:ENST00000676518.1:ENST00000677051.1:ENST00000677857.1:ENST00000677869.1:ENST00000416682.6:ENST00000303622.13:ENST00000216288.11:ENST00000679105.1:ENST00000553942.5:ENST00000335102.9:ENST00000678091.1:ENST00000561071.5:ENST00000676745.1:ENST00000554627.5:ENST00000679299.1:ENST00000678661.1:ENST00000677352.1:ENST00000676944.1:ENST00000677023.1:ENST00000678213.1:ENST00000678373.1:ENST00000679005.1:ENST00000556463.5:ENST00000558787.1:ENST00000555235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	65	2	3.08569	4.29908	5.51247	0.0230387	0.020773	0.102982	0.102713
chr14	89401764	89401864	6028125	0	-	0.5	(0.485,0.523]	chr14	591472	2	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000556916.5:ENST00000554005.1:ENST00000555855.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	65	2	3.12385	4.299049999999999	5.47425	0.0243396	0.0193526	0.106588	0.0994526
chr13	60114682	60114782	5722704	0	-	0.35	(0.33,0.36]	chr13	561392	21	INTRON	INTRON	DIAPH3	ENSG00000139734.19	ENST00000400324.9:ENST00000377908.6:ENST00000400319.5:ENST00000400320.5:ENST00000267215.8	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.102	4.29886	4.49572	0.103264	0.0642879	0.197541	0.184676
chr22	28069811	28069911	7775715	0	-	0.34	(0.33,0.36]	chr22	815674	391	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7:ENST00000612946.4:ENST00000442232.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.102	4.29886	4.49572	0.103264	0.0642879	0.197541	0.184676
chr5	60333583	60333683	2677489	0	-	0.35	(0.33,0.36]	chr5	264422	296	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000502484.6:ENST00000509355.5:ENST00000506024.5:ENST00000506510.6:ENST00000511382.1:ENST00000505507.6:ENST00000514552.5:ENST00000515835.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	0	30	2	4.102	4.29886	4.49572	0.103264	0.0642879	0.197541	0.184676
chr8	119219388	119219487	3904793	0	+	0.333333	(0.33,0.36]	chr8	373178	98	INTRON	INTRON	MAL2	ENSG00000147676.14	ENST00000522112.6:ENST00000534619.5:ENST00000614891.5:ENST00000531508.1	protein_coding	protein_coding	protein_coding	protein_coding	0	30	2	4.102	4.29886	4.49572	0.103264	0.0642879	0.197541	0.184676
chr1	12585441	12585541	402457	0	-	0.64	(0.58,1]	chr1	46222	44	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	60	2	3.20215	4.298805	5.39546	0.0168207	0.0136092	0.0884836	0.0811697
chr2	86474675	86474775	845646	0	+	0.39	(0.36,0.39]	chr2	95394	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	KDM3A	ENSG00000115548.17	ENST00000409556.5:ENST00000312912.10:ENST00000441719.5:ENST00000409064.5:ENST00000485171.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	90	2	3.38348	4.2987400000000004	5.214	0.0308572	0.00887999	0.119556	0.0618231
chrY	19596271	19596371	8144201	0	+	0.31	(0.29,0.33]	chrY	848372	33	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TXLNGY	ENSG00000131002.13	ENST00000445715.6:ENST00000253320.8	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	2	173	2	3.70142	4.298555	4.89569	0.0148734	1.9694e-4	0.0833515	0.00447749
chr12	76068825	76068908	5455905	0	-	0.361446	(0.36,0.39]	chr12	536730	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5:ENST00000549479.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	101	2	3.44699	4.298285	5.14958	0.0493212	0.0039282	0.146207	0.0366861
chr8	13208766	13208866	3940595	0	-	0.31	(0.29,0.33]	chr8	376715	754	INTRON	INTRON	DLC1	ENSG00000164741.15	ENST00000276297.9:ENST00000512044.6:ENST00000509922.5:ENST00000503161.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	732	2	4.16119	4.2981300000000005	4.43507	6.35435e-4	1.45006e-4	0.0148176	0.00359413
chr12	9103347	9103444	5368061	0	-	0.28866000000000003	[0,0.29]	chr12	526389	13	INTRON	INTRON	A2M	ENSG00000175899.15	ENST00000318602.12:ENST00000545828.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	66	2	3.77403	4.2974950000000005	4.82096	0.0456837	0.00383316	0.142336	0.0358643
chr16	89294388	89294488	6659749	0	-	0.48	(0.45,0.485]	chr16	666648	22	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	241	2	4.08045	4.2974049999999995	4.51436	0.00868268	1.69604e-4	0.0624732	0.00402263
chr22	25486327	25486427	7701407	0	+	0.53	(0.523,0.58]	chr22	805972	248	INTRON	INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000686640.1:ENST00000509460.3:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	67	2	2.86937	4.29712	5.72487	0.0324455	0.0163679	0.130548	0.0875379
chr20	47258999	47259098	7569904	0	-	0.525253	(0.523,0.58]	chr20	791018	92	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	110	2	2.1168	4.296985	6.47717	0.044099	0.00439843	0.153511	0.0429852
chr17	72560417	72560517	6963915	0	-	0.58	(0.523,0.58]	chr17	710389	260	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	3	229	2	4.23665	4.296445	4.35624	0.0059863	2.31061e-4	0.0508545	0.00499753
chr18	48602637	48602737	7057291	0	+	0.51	(0.485,0.523]	chr18	720287	619	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1	protein_coding	protein_coding	protein_coding	protein_coding	2	87	2	2.96979	4.296395	5.623	0.0192139	0.0105977	0.095424900000000007	0.069518
chr3	65809921	65810021	1813574	0	-	0.52	(0.485,0.523]	chr3	187296	894	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	172	2	4.08211	4.296279999999999	4.51045	0.00793825	5.78208e-4	0.0596361	0.00965478
chr10	7804718	7804816	4442607	0	+	0.418367	(0.39,0.419]	chr10	425645	15	INTRON	INTRON	ATP5F1C	ENSG00000165629.20	ENST00000493053.5:ENST00000335698.4:ENST00000356708.12:ENST00000465936.5:ENST00000473809.5:ENST00000480528.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	68	2	3.14029	4.296265	5.45224	0.032783	0.0211243	0.122593	0.103778
chr15	55835555	55835652	6272297	0	-	0.391753	(0.39,0.419]	chr15	618219	9	INTRON	INTRON	NEDD4	ENSG00000069869.17	ENST00000435532.8:ENST00000338963.6:ENST00000508342.5:ENST00000503468.5:ENST00000508871.5:ENST00000648451.1:ENST00000506154.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	68	2	3.14029	4.296265	5.45224	0.032783	0.0211243	0.122593	0.103778
chr19	945112	945212	7185297	0	+	0.54	(0.523,0.58]	chr19	730741	120	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	119	2	2.37065	4.29596	6.22127	0.0193299	0.00699217	0.0994526	0.0555241
chr1	30934442	30934542	434618	0	-	0.54	(0.523,0.58]	chr1	51446	7	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000530669.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	107	2	2.40998	4.295635	6.18129	0.0653274	5.34061e-4	0.162385	0.0091384
chr3	48088172	48088272	1765947	0	-	0.63	(0.58,1]	chr3	182011	719	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	3.13234	4.295529999999999	5.45872	0.0322188	0.00211999	0.121593	0.0239744
chr4	913848	913938	2178759	0	-	0.7	(0.58,1]	chr4	220688	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000512325.3:ENST00000510022.5:ENST00000511229.5:ENST00000511983.5:ENST00000507124.1:ENST00000628912.1:ENST00000513935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	71	2	2.87471	4.295495	5.71628	0.0495478	0.00104668	0.146562	0.0146403
chr16	85514783	85514883	6518219	0	+	0.63	(0.58,1]	chr16	646391	1555	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	2.47204	4.295344999999999	6.11865	0.0623526	0.00429384	0.181127	0.042386
chr16	85524079	85524179	6518312	0	+	0.66	(0.58,1]	chr16	646391	1648	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	2.47204	4.295344999999999	6.11865	0.0623526	0.00429384	0.181127	0.042386
chr7	65054125	65054225	3376883	0	+	0.38	(0.36,0.39]	chr7	325925	152	INTRON	INTRON	CCT6P3	ENSG00000234585.6	ENST00000419314.5:ENST00000426828.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	1	74	2	2.61656	4.295255	5.97395	0.057025	0.0145438	0.173546	0.0823572
chr11	115482394	115482494	5130914	0	-	0.39	(0.36,0.39]	chr11	498122	362	INTRON	INTRON	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000541434.5:ENST00000543249.1:ENST00000540951.1:ENST00000536781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	68	2	3.09749	4.294865	5.49224	0.0304242	0.023009	0.11845	0.109581
chr5	180809543	180809633	2823310	0	-	0.466667	(0.45,0.485]	chr5	277053	3	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MGAT1	ENSG00000131446.17	ENST00000333055.8:ENST00000393340.7:ENST00000446023.6:ENST00000506889.1:ENST00000514438.1:ENST00000513431.5:ENST00000504385.5:ENST00000514760.1:ENST00000512080.1:ENST00000510341.1:ENST00000508702.1:ENST00000513149.1:ENST00000508090.1:ENST00000510962.1:ENST00000506708.1:ENST00000506033.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	80	2	2.90749	4.29452	5.68155	0.0588897	0.00241241	0.15607	0.0261086
chr16	8857077	8857174	6546168	0	-	0.608247	(0.58,1]	chr16	651451	14	INTRON	INTRON	CARHSP1	ENSG00000153048.11	ENST00000396593.6:ENST00000611932.4:ENST00000618335.4:ENST00000619881.4:ENST00000610831.4:ENST00000614449.4:ENST00000311052.10:ENST00000561530.5:ENST00000567554.5:ENST00000565287.5:ENST00000567908.5:ENST00000570125.5:ENST00000568117.5:ENST00000568968.1	protein_coding	protein_coding	protein_coding	protein_coding	2	150	2	4.11875	4.29438	4.47001	0.00489075	4.15967e-4	0.0457614	0.00768537
chr19	1413853	1413952	7187485	0	+	0.383838	(0.36,0.39]	chr19	731286	34	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	190	2	4.25548	4.294175	4.33287	0.00723839	0.00126236	0.0565323	0.0167512
chr2	134177353	134177452	896004	0	+	0.585859	(0.58,1]	chr2	101196	498	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	81	2	2.66286	4.29407	5.92528	0.0183006	0.0062948	0.0958973	0.0523832
chr4	165410792	165410891	2162743	0	+	0.434343	(0.419,0.45]	chr4	219073	241	INTRON	INTRON	CPE	ENSG00000109472.14	ENST00000513982.5:ENST00000402744.9	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.35398	4.2940249999999995	5.23407	0.0486006	0.0139289	0.145074	0.0824192
chr12	132731434	132731531	5539807	0	-	0.412371	(0.39,0.419]	chr12	546675	13	UTR5	UTR5:EXON_MRNA:INTRON	ANKLE2	ENSG00000176915.15	ENST00000357997.10:ENST00000539605.5:ENST00000542282.5:ENST00000542657.5:ENST00000542374.5:ENST00000538766.1:ENST00000505031.6:ENST00000439231.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	68	2	3.34529	4.293555	5.24182	0.0441194	0.0137041	0.140174	0.0814223
chr3	49286725	49286825	1771953	0	-	0.44	(0.419,0.45]	chr3	183559	4	SS3_PROX	SS3_PROX:INTRON	USP4	ENSG00000114316.13	ENST00000265560.9:ENST00000351842.8:ENST00000485450.5:ENST00000431357.1:ENST00000475873.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	70	2	3.4957	4.293515	5.09133	0.0586308	0.0102234	0.155565	0.0678072
chr17	17716731	17716831	6689202	0	+	0.67	(0.58,1]	chr17	671338	318	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.1491	4.29331	5.43752	0.0156166	0.0154006	0.0869771	0.0849828
chr6	48066655	48066755	3146615	0	-	0.39	(0.36,0.39]	chr6	306784	572	INTRON	INTRON	PTCHD4	ENSG00000244694.8	ENST00000339488.9:ENST00000398738.3:ENST00000679966.1	protein_coding	protein_coding	protein_coding	protein_coding	2	92	2	2.98319	4.292745	5.6023	0.0258522	0.0119153	0.109555	0.0749795
chr4	23794846	23794943	2208636	0	-	0.43299	(0.419,0.45]	chr4	223244	30	UTR3	UTR3:EXON_MRNA:INTRON	PPARGC1A	ENSG00000109819.9	ENST00000509702.5:ENST00000264867.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	93	2	2.92212	4.29212	5.66212	0.0266819	0.0141969	0.111563	0.0833845
chr20	33010823	33010923	7457397	0	+	0.6	(0.58,1]	chr20	776366	4	SS3_PROX	SS3_PROX:INTRON	BPIFB2	ENSG00000078898.7	ENST00000170150.4	protein_coding	protein_coding	protein_coding	protein_coding	5	278	2	3.46353	4.291975	5.12042	7.32185e-4	5.41094e-4	0.0135804	0.0114112
chr3	150745290	150745390	1943694	0	-	0.51	(0.485,0.523]	chr3	197663	22	INTRON	INTRON	SIAH2	ENSG00000181788.4	ENST00000312960.4:ENST00000482706.1	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	2.77877	4.29196	5.80515	0.0682166	0.00153111	0.164526	0.0191213
chr16	67967841	67967938	6610230	0	-	0.597938	(0.58,1]	chr16	661575	11	INTRON	INTRON	SLC12A4	ENSG00000124067.17	ENST00000422611.6:ENST00000316341.8:ENST00000572037.5:ENST00000570802.5:ENST00000576616.5:ENST00000573023.6:ENST00000576377.1:ENST00000571299.5:ENST00000572010.5:ENST00000576462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	64	2	2.78186	4.29188	5.8019	0.0342923	0.007984	0.13449	0.0596361
chr10	103688238	103688337	4756978	0	-	0.444444	(0.419,0.45]	chr10	454779	102	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	93	2	2.6465	4.291845	5.93719	0.0255963	0.0176643	0.115966	0.0909046
chr11	57500020	57500106	5038773	0	-	0.55814	(0.523,0.58]	chr11	488207	5	INTRON	INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	373	2	4.10552	4.291345	4.47717	0.00331993	7.68211e-5	0.0368376	0.00224848
chr22	32818597	32818697	7717795	0	+	0.65	(0.58,1]	chr22	807776	161	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	2	115	2	3.32523	4.29127	5.25731	0.0101602	0.00358178	0.0683801	0.0342681
chr13	113047738	113047837	5656112	0	+	0.666667	(0.58,1]	chr13	555180	5	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	2.91493	4.290955	5.66698	0.0259506	0.0102927	0.116361	0.0684871
chr6	1739374	1739474	3080265	0	-	0.57	(0.523,0.58]	chr6	299476	125	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	64	2	3.27377	4.29086	5.30795	0.0315825	0.0137592	0.120781	0.0814923
chr7	74528735	74528834	3392121	0	+	0.545455	(0.523,0.58]	chr7	327389	42	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6:ENST00000476977.5:ENST00000489094.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	3.27377	4.29086	5.30795	0.0315825	0.0137592	0.120781	0.0814923
chr16	85398432	85398532	6517055	0	+	0.56	(0.523,0.58]	chr16	646391	391	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	2.61478	4.29076	5.96674	0.052707	0.0109075	0.167062	0.0707085
chr1	165892006	165892098	263124	0	+	0.48913	(0.485,0.523]	chr1	31063	3	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	2.74113	4.290635	5.84014	0.0719691	0.00139792	0.168159	0.0179863
chr10	79430660	79430759	4720705	0	-	0.545455	(0.523,0.58]	chr10	450456	359	INTRON	INTRON	ZCCHC24	ENSG00000165424.7	ENST00000372336.4:ENST00000372333.3	protein_coding	protein_coding	protein_coding	protein_coding	3	292	2	4.09254	4.29059	4.48864	0.00180302	0.00154847	0.0243127	0.0215053
chr4	68329102	68329202	2245682	0	-	0.36	(0.33,0.36]	chr4	226374	45	INTRON	INTRON	YTHDC1	ENSG00000083896.13	ENST00000344157.9:ENST00000355665.7:ENST00000579690.5:ENST00000506175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	81	2	2.99109	4.290559999999999	5.59003	0.0526939	0.00344516	0.14912	0.0333853
chr8	25246555	25246655	3774704	0	+	0.5	(0.485,0.523]	chr8	363472	24	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000410074.5:ENST00000481100.5	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	2.88614	4.290455	5.69477	0.0583792	0.00203227	0.155373	0.0232814
chr16	85523379	85523479	6518305	0	+	0.54	(0.523,0.58]	chr16	646391	1641	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	83	2	3.32604	4.290035	5.25403	0.0296013	0.00573579	0.116079	0.0467736
chr1	43560619	43560718	107045	0	+	0.585859	(0.58,1]	chr1	13192	63	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	199	2	4.07527	4.28991	4.50455	0.00215269	3.47904e-4	0.02913	0.00674233
chr19	56837916	56838014	7410700	0	-	0.571429	(0.523,0.58]	chr19	771674	2	INTRON	INTRON	ZIM2:PEG3	ENSG00000269699.7:ENSG00000198300.14	ENST00000593711.6:ENST00000689654.1:ENST00000629319.3:ENST00000599935.5:ENST00000693159.1:ENST00000650111.1:ENST00000648694.1:ENST00000326441.15:ENST00000649233.1:ENST00000649680.1:ENST00000649876.1:ENST00000650632.1:ENST00000650102.1:ENST00000649735.1:ENST00000647621.1:ENST00000598410.5:ENST00000593695.5:ENST00000599577.5:ENST00000594389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	239	2	3.83421	4.2895200000000004	4.74483	0.00561153	2.83162e-4	0.0493906	0.00581439
chr4	77818673	77818773	2256068	0	-	0.8	(0.58,1]	chr4	227829	3	SS5_PROX	SS5_PROX:INTRON	CNOT6L	ENSG00000138767.14	ENST00000504123.7:ENST00000649644.1:ENST00000515506.6:ENST00000512485.6:ENST00000504804.7:ENST00000506166.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	74	2	3.3216	4.289455	5.25731	0.0230709	0.00358178	0.102982	0.0342681
chr10	14558001	14558101	4633237	0	-	0.48	(0.45,0.485]	chr10	442809	12	INTRON	INTRON	FAM107B	ENSG00000065809.14	ENST00000181796.7:ENST00000622567.4:ENST00000468747.5:ENST00000378467.8:ENST00000487335.5:ENST00000378465.7:ENST00000378458.6:ENST00000378462.5:ENST00000479731.5:ENST00000468492.5:ENST00000452706.6:ENST00000488576.5:ENST00000442012.5:ENST00000482277.5:ENST00000472095.5:ENST00000471815.5:ENST00000464952.5:ENST00000495292.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	73	2	3.93538	4.28942	4.64346	0.0850039	0.00301535	0.181766	0.0305643
chr3	17497179	17497279	1702337	0	-	0.35	(0.33,0.36]	chr3	177733	683	INTRON	INTRON	TBC1D5	ENSG00000131374.15	ENST00000253692.11:ENST00000696125.1:ENST00000414318.2:ENST00000429383.8:ENST00000446818.6:ENST00000415814.6:ENST00000452492.6:ENST00000412981.5:ENST00000428355.5:ENST00000425944.5:ENST00000430169.5:ENST00000445294.5:ENST00000414349.5:ENST00000443499.6:ENST00000444756.5:ENST00000497531.5:ENST00000443386.5:ENST00000507877.5:ENST00000446863.5:ENST00000434420.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	67	2	3.03916	4.28941	5.53966	0.0251076	0.0250322	0.114418	0.107672
chr14	104870055	104870155	5925912	0	+	0.5	(0.485,0.523]	chr14	579942	11	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	2	101	2	3.67338	4.2894000000000005	4.90542	0.0561086	0.00172431	0.154188	0.0208204
chr16	15882748	15882848	6556281	0	-	0.3	(0.29,0.33]	chr16	653023	4	SS5_PROX	SS5_PROX:INTRON	CEP20	ENSG00000133393.13	ENST00000255759.11:ENST00000573968.5:ENST00000573087.5:ENST00000573396.5:ENST00000575744.5:ENST00000572415.5:ENST00000575073.5:ENST00000573429.5:ENST00000575938.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	68	2	2.78168	4.2891	5.79652	0.0393252	0.0131751	0.143321	0.0785398
chr20	38426681	38426771	7561092	0	-	0.566667	(0.523,0.58]	chr20	789769	3	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000671309.1:ENST00000669405.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	78	2	2.70025	4.289075	5.8779	0.0763549	0.00121652	0.174544	0.0162693
chr14	68897797	68897895	5999317	0	-	0.632653	(0.58,1]	chr14	588704	37	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	71	2	3.02751	4.288645	5.54978	0.0385189	0.00165911	0.131324	0.0202545
chr10	7721877	7721977	4442135	0	+	0.33	(0.29,0.33]	chr10	425523	1	SS5_PROX	SS5_PROX:INTRON	ITIH2	ENSG00000151655.19	ENST00000358415.9:ENST00000379587.4	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	4.06424	4.288625	4.51301	0.0885563	0.0020563	0.183874	0.0235218
chr10	132711454	132711554	4618582	0	+	0.58	(0.523,0.58]	chr10	441181	6	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000487614.1:ENST00000498337.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	3.35934	4.288305	5.21727	0.0361597	0.0113252	0.127853	0.071894
chr16	81625094	81625194	6509548	0	+	0.58	(0.523,0.58]	chr16	645926	30	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	2	110	2	2.73279	4.28826	5.84373	0.039547	0.00133116	0.133109	0.0173248
chr17	66339090	66339190	6783795	0	+	0.43	(0.419,0.45]	chr17	684226	326	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	94	2	3.05517	4.28795	5.52073	0.0327198	0.010527	0.122543	0.0691044
chr2	240614592	240614691	1075085	0	+	0.606061	(0.58,1]	chr2	116637	72	INTRON	INTRON	CAPN10:GPR35	ENSG00000142330.20:ENSG00000178623.13	ENST00000270364.11:ENST00000319838.10:ENST00000403859.1	protein_coding	protein_coding	protein_coding	protein_coding	2	149	2	4.08431	4.287895000000001	4.49148	0.00525202	3.89116e-4	0.0476984	0.00732219
chr13	113222200	113222299	5657431	0	+	0.474747	(0.45,0.485]	chr13	555532	25	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000488558.2:ENST00000375440.9:ENST00000494985.5:ENST00000463426.5:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	80	2	2.61676	4.287850000000001	5.95894	0.0883035	0.00119342	0.183874	0.016037
chr10	18573556	18573656	4642464	0	-	0.38	(0.36,0.39]	chr10	443321	212	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	2	94	2	2.42193	4.287675	6.15342	0.0391325	0.0108737	0.142703	0.0707085
chr20	34567742	34567842	7547105	0	-	0.6	(0.58,1]	chr20	787854	64	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	2.71042	4.2876650000000005	5.86491	0.0396128	0.00707578	0.143388	0.0558168
chr16	68085860	68085916	6474713	0	+	0.607143	(0.58,1]	chr16	643036	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	1	61	2	3.68463	4.28704	4.88945	0.0388928	0.00404771	0.131324	0.0371291
chr12	108856631	108856729	5494269	0	-	0.612245	(0.58,1]	chr12	540513	36	INTRON	INTRON	SSH1	ENSG00000084112.15	ENST00000326495.10:ENST00000551165.5:ENST00000548522.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	73	2	2.50987	4.286905	6.06394	0.0865901	3.80904e-4	0.182221	0.00721291
chr17	15464663	15464763	6860081	0	-	0.46	(0.45,0.485]	chr17	695067	112	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	183	2	3.49427	4.28673	5.07919	0.0237694	1.23722e-4	0.105296	0.00321551
chr17	77300375	77300474	6803354	0	+	0.616162	(0.58,1]	chr17	686716	51	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	60	2	3.09402	4.286205	5.47839	0.0174733	0.0145198	0.0928044	0.0823104
chr17	57467203	57467303	6761884	0	+	0.54	(0.523,0.58]	chr17	682137	221	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	78	2	2.66054	4.285905	5.91127	0.0806884	0.00111349	0.177452	0.0152496
chr2	171021382	171021480	1312773	0	-	0.336735	(0.33,0.36]	chr2	140568	61	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	81	2	2.56404	4.285855	6.00767	0.0954498	0.00123038	0.189038	0.0164259
chr17	339659	339758	6821685	0	-	0.646465	(0.58,1]	chr17	689625	1	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000577079.5:ENST00000573780.5:ENST00000575130.5:ENST00000575634.5	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	2.97713	4.2858	5.59447	0.0226795	0.0117666	0.108193	0.0737098
chr3	115791799	115791899	1883324	0	-	0.75	(0.58,1]	chr3	190999	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000289153	ENSG00000289153.1	ENST00000688236.1:ENST00000690885.1	lncRNA	lncRNA	lncRNA	lncRNA	1	84	2	3.75278	4.2857	4.81862	0.0102696	0.01024	0.0684871	0.0678072
chr12	111513639	111513739	5499526	0	-	0.27	[0,0.29]	chr12	541347	1	SS3_PROX	SS3_PROX:INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000550236.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000481331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	74	2	3.19982	4.285175	5.37053	0.029619	0.00378192	0.116079	0.0354402
chr17	51269799	51269897	6754064	0	+	0.387755	(0.36,0.39]	chr17	681383	5	INTRON	INTRON	UTP18	ENSG00000011260.14	ENST00000225298.12	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.00362	4.28508	5.56654	0.027769	0.0272676	0.12074	0.112327
chr10	34684565	34684664	4670502	0	-	0.565657	(0.523,0.58]	chr10	445537	50	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	5	315	2	4.00825	4.284995	4.56174	0.00322317	2.11676e-4	0.0362983	0.00471362
chr15	84766811	84766910	6174165	0	+	0.494949	(0.485,0.523]	chr15	607320	16	INTRON	INTRON	ZNF592	ENSG00000166716.10	ENST00000560079.7	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	2.95352	4.284855	5.61619	0.0528263	0.00247695	0.14912	0.0266492
chr18	69487327	69487427	7084046	0	+	0.44	(0.419,0.45]	chr18	722115	157	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.52905	4.284739999999999	5.04043	0.0625897	0.00949141	0.160305	0.0650078
chr1	61292265	61292365	148210	0	+	0.34	(0.33,0.36]	chr1	17170	143	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000663597.1:ENST00000657234.1:ENST00000655770.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	68	2	3.56232	4.28437	5.00642	0.0542065	0.00801919	0.151733	0.0581592
chr3	64006762	64006860	1495476	0	+	0.459184	(0.45,0.485]	chr3	160394	3	INTRON	INTRON	PSMD6-AS2	ENSG00000239653.1	ENST00000472046.1	lncRNA	lncRNA	lncRNA	lncRNA	1	69	2	2.75654	4.28432	5.8121	0.0419966	0.0158765	0.149115	0.0859576
chr16	8640539	8640630	6381025	0	+	0.527473	(0.523,0.58]	chr16	631103	5	INTRON	INTRON	METTL22	ENSG00000067365.15	ENST00000163678.11:ENST00000381920.8:ENST00000561758.5:ENST00000568967.5:ENST00000572956.5:ENST00000561993.5:ENST00000563501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	68	2	2.74768	4.284034999999999	5.82039	0.0411359	0.0139724	0.147756	0.0805959
chr1	213990979	213991079	339385	0	+	0.35	(0.33,0.36]	chr1	38089	8	INTRON	INTRON	PROX1	ENSG00000117707.16	ENST00000471129.1:ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2:ENST00000607425.1	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.45733	4.2837250000000004	5.11012	0.04702	0.0102015	0.143232	0.0678072
chr17	44109628	44109728	6910962	0	-	0.54	(0.523,0.58]	chr17	703517	154	INTRON	INTRON	HDAC5	ENSG00000108840.16	ENST00000225983.10:ENST00000682912.1:ENST00000336057.9:ENST00000586802.5:ENST00000588703.5:ENST00000587135.1:ENST00000591714.5	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	2.80981	4.283615	5.75742	0.0364868	0.0155135	0.139793	0.0849828
chrX	48942402	48942501	8040899	0	-	0.555556	(0.523,0.58]	chrX	838808	57	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	169	2	3.90397	4.28351	4.66305	0.0110124	3.60484e-4	0.0708586	0.00694446
chr19	18509423	18509523	7348290	0	-	0.66	(0.58,1]	chr19	761503	336	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	105	2	3.06157	4.28327	5.50497	0.0170554	0.00187297	0.089166	0.0219434
chr2	163689103	163689203	1295853	0	-	0.44	(0.419,0.45]	chr2	139073	769	INTRON	INTRON	FIGN	ENSG00000182263.14	ENST00000409634.5:ENST00000333129.4:ENST00000482917.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	69	2	2.9727	4.282925	5.59315	0.0303302	0.029494	0.126768	0.116079
chr1	149466247	149466347	238176	0	+	0.37	(0.36,0.39]	chr1	26431	22	UTR3	UTR3:EXON_MRNA	NOTCH2NLC	ENSG00000286219.2	ENST00000650865.2:ENST00000578189.1	protein_coding	protein_coding	protein_coding	protein_coding	2	92	2	2.53819	4.282865	6.02754	0.0310559	0.0133452	0.127822	0.0789398
chr2	229819111	229819211	1380841	0	-	0.35	(0.33,0.36]	chr2	147548	2	INTRON	INTRON	TRIP12	ENSG00000153827.14	ENST00000675453.1:ENST00000675903.1:ENST00000283943.9:ENST00000675423.1:ENST00000389044.8:ENST00000389045.7:ENST00000479037.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	110	2	2.18671	4.282685	6.37866	0.0938202	4.63001e-4	0.188571	0.00825119
chr9	134367778	134367878	4261101	0	+	0.65	(0.58,1]	chr9	406311	408	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	70	2	2.47204	4.282299999999999	6.09256	0.0623526	0.00452436	0.181127	0.0436138
chr7	5703966	5704066	3538400	0	-	0.36	(0.33,0.36]	chr7	341641	511	INTRON	INTRON	RNF216	ENSG00000011275.19	ENST00000425013.6:ENST00000389902.8:ENST00000389900.8:ENST00000484458.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	80	2	2.89559	4.282085	5.66858	0.0605295	0.0028562	0.158506	0.0294256
chr20	36855087	36855186	7557052	0	-	0.616162	(0.58,1]	chr20	789155	153	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.30273	4.282055	5.26138	0.021217	0.0107069	0.0996078	0.0700635
chr9	94999717	94999817	4189990	0	+	0.44	(0.419,0.45]	chr9	398123	199	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000297979.9:ENST00000424143.5:ENST00000462125.5:ENST00000479161.5:ENST00000451893.5:ENST00000460573.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	84	2	2.91455	4.281795000000001	5.64904	0.06467	0.00368884	0.162218	0.0348088
chr12	113838182	113838282	5509250	0	-	0.56	(0.523,0.58]	chr12	542458	145	INTRON	INTRON	RBM19	ENSG00000122965.11	ENST00000545145.6:ENST00000392561.7:ENST00000261741.10:ENST00000552384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	78	2	2.6197	4.281795	5.94389	0.0853454	0.0010207	0.181766	0.0143498
chr19	55106141	55106240	7406487	0	-	0.454545	(0.45,0.485]	chr19	770964	22	INTRON	INTRON	PPP1R12C	ENSG00000125503.13	ENST00000263433.8:ENST00000435544.6:ENST00000592993.1	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.26377	4.281750000000001	5.29973	0.035042	0.0149252	0.12704	0.0848525
chr4	99928365	99928453	2289679	0	-	0.454545	(0.45,0.485]	chr4	230438	7	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DNAJB14	ENSG00000164031.17	ENST00000442697.7:ENST00000420137.5:ENST00000334223.6:ENST00000398991.3:ENST00000426476.5:ENST00000474664.5:ENST00000493110.1:ENST00000471738.1:ENST00000469942.1:ENST00000610281.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	65	2	3.22036	4.2816849999999995	5.34301	0.0328801	0.016408	0.122593	0.0911382
chr6	159696956	159697056	3300435	0	-	0.5	(0.485,0.523]	chr6	319519	37	INTRON	INTRON	SOD2	ENSG00000112096.19	ENST00000546087.5:ENST00000545162.5:ENST00000535561.5:ENST00000537657.5:ENST00000401980.3	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	2.62192	4.281115	5.94031	0.0849566	0.00107389	0.181766	0.0148869
chr11	64145459	64145558	5049032	0	-	0.59596	(0.58,1]	chr11	490257	187	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	59	2	3.39676	4.280645	5.16453	0.0249802	0.0085026	0.10758	0.0608246
chr20	63734257	63734354	7509383	0	+	0.57732000000000006	(0.523,0.58]	chr20	783523	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000632538.1:ENST00000484569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	172	2	3.62324	4.28063	4.93802	0.0180195	1.58605e-4	0.0921579	0.00384095
chr7	47349444	47349544	3587285	0	-	0.62	(0.58,1]	chr7	346030	27	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	79	2	3.00436	4.280585	5.55681	0.0126042	0.00785951	0.0761905	0.0576181
chr10	32940822	32940922	4664048	0	-	0.46	(0.45,0.485]	chr10	445320	17	INTRON	INTRON	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000474568.6:ENST00000676460.1:ENST00000475184.6:ENST00000484088.5:ENST00000480226.5:ENST00000534049.5:ENST00000528877.5:ENST00000414670.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	65	2	3.30591	4.280505	5.2551	0.0373953	0.0135996	0.130656	0.0811697
chr1	8615780	8615879	393709	0	-	0.292929	(0.29,0.33]	chr1	45051	7	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	64	2	3.24556	4.28037	5.31518	0.0288318	0.0151115	0.116067	0.085778
chr21	37085693	37085789	7617536	0	+	0.4375	(0.419,0.45]	chr21	795684	10	INTRON	INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2:ENST00000399017.6:ENST00000484047.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	85	2	3.03039	4.27999	5.52959	0.0550674	0.00484244	0.153454	0.0418176
chr7	79374247	79374347	3625741	0	-	0.45	(0.419,0.45]	chr7	349234	225	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000628997.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	85	2	3.03039	4.27999	5.52959	0.0550674	0.00484244	0.153454	0.0418176
chr3	179150116	179150216	1634566	0	+	0.43	(0.419,0.45]	chr3	170934	4	SS5_PROX	SS5_PROX:INTRON	PIK3CA	ENSG00000121879.6	ENST00000477735.1:ENST00000263967.4:ENST00000643187.1:ENST00000675786.1:ENST00000468036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	98	2	3.57923	4.279885	4.98054	0.0243601	0.0154548	0.106605	0.0869771
chr16	89350489	89350589	6660323	0	-	0.37	(0.36,0.39]	chr16	666695	68	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	109	2	2.55861	4.2798	6.00099	0.0193249	0.0139273	0.0994526	0.0805916
chr4	3372905	3373004	2005166	0	+	0.565657	(0.523,0.58]	chr4	204668	22	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7:ENST00000338806.4:ENST00000506998.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	64	2	3.08569	4.279755	5.47382	0.0244797	0.020773	0.106683	0.102713
chr4	77914662	77914762	2065479	0	+	0.3	(0.29,0.33]	chr4	211113	49	INTRON	INTRON	MRPL1	ENSG00000169288.18	ENST00000315567.13:ENST00000502384.3:ENST00000504901.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	3.20079	4.27963	5.35847	0.0269557	0.01667	0.112113	0.0917029
chrX	16852875	16852964	7985428	0	-	0.516854	(0.485,0.523]	chrX	835434	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RBBP7	ENSG00000102054.18	ENST00000380087.7:ENST00000380084.8:ENST00000404022.5:ENST00000481586.1:ENST00000444437.5:ENST00000416035.1:ENST00000486166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	64	2	3.38908	4.2796	5.17012	0.038581	0.0107186	0.131324	0.0700744
chrX	2380662	2380762	7967650	0	-	0.51	(0.485,0.523]	chrX	834355	423	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	87	2	2.59183	4.2795000000000005	5.96717	0.0250389	0.0108319	0.114418	0.0707085
chr16	977955	978054	6531818	0	-	0.50505	(0.485,0.523]	chr16	648726	71	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000545827.6:ENST00000570014.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	170	2	4.06697	4.27937	4.49177	0.00816193	6.09927e-4	0.0605492	0.0100466
chr2	101803034	101803133	861689	0	+	0.484848	(0.45,0.485]	chr2	97540	30	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5:ENST00000627726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	67	2	3.60494	4.27937	4.9538	0.0569772	0.00682726	0.154343	0.0525149
chr11	102419180	102419279	5114220	0	-	0.272727	[0,0.29]	chr11	496626	166	INTRON	INTRON	TMEM123	ENSG00000152558.15	ENST00000361236.7:ENST00000398136.7:ENST00000532161.5:ENST00000528969.5:ENST00000529492.5:ENST00000525577.5:ENST00000531103.5:ENST00000526676.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	86	2	2.44641	4.279170000000001	6.11193	0.0325321	0.00480124	0.130831	0.0452644
chr22	37513520	37513618	7808342	0	-	0.642857	(0.58,1]	chr22	818439	14	INTRON	INTRON	CARD10	ENSG00000100065.15	ENST00000403299.5:ENST00000251973.10:ENST00000494166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	96	2	4.06678	4.278969999999999	4.49116	0.0207449	0.00544536	0.102713	0.0486855
chr14	70024546	70024646	5872628	0	+	0.5	(0.485,0.523]	chr14	573363	7	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	2.97038	4.278805	5.58723	0.0267011	0.0203514	0.118343	0.0979211
chr17	32539242	32539342	6883929	0	-	0.51	(0.485,0.523]	chr17	698835	423	INTRON	INTRON	MYO1D	ENSG00000176658.17	ENST00000318217.10:ENST00000394649.8:ENST00000577352.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	65	2	2.97038	4.278805	5.58723	0.0267011	0.0203514	0.118343	0.0979211
chr19	2335420	2335519	7189475	0	+	0.646465	(0.58,1]	chr19	731782	3	INTRON	INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	60	2	3.60807	4.2784450000000005	4.94882	0.0354433	0.00495688	0.127188	0.0425347
chr2	42256730	42256830	773918	0	+	0.44	(0.419,0.45]	chr2	88940	1	SS5_PROX	SS5_PROX:INTRON	EML4	ENSG00000143924.19	ENST00000318522.10:ENST00000402711.6:ENST00000409040.1:ENST00000401738.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	73	2	2.64776	4.278425	5.90909	0.0551054	0.0184411	0.169163	0.0927235
chr3	73055441	73055541	1503319	0	+	0.37	(0.36,0.39]	chr3	160786	77	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	82	2	2.59031	4.27842	5.96653	0.0956255	0.00155347	0.189038	0.0193429
chr1	155667436	155667535	597840	0	-	0.353535	(0.33,0.36]	chr1	70120	57	INTRON	INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000442834.6:ENST00000355499.9:ENST00000405763.7:ENST00000488784.5:ENST00000493625.5:ENST00000477470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	66	2	3.13306	4.278365	5.42367	0.0299185	0.0206439	0.116945	0.102713
chr20	8275400	8275500	7428016	0	+	0.37	(0.36,0.39]	chr20	773686	186	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	68	2	2.95428	4.27829	5.6023	0.0305895	0.0258522	0.126768	0.109555
chr8	73605859	73605959	3997914	0	-	0.45	(0.419,0.45]	chr8	382452	16	INTRON	INTRON	STAU2	ENSG00000040341.18	ENST00000524300.6:ENST00000522695.5:ENST00000523558.5:ENST00000521210.5:ENST00000355780.9:ENST00000519961.5:ENST00000521727.5:ENST00000521451.5:ENST00000522509.5:ENST00000517542.5:ENST00000518981.5:ENST00000518767.5:ENST00000518502.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	71	2	2.7644	4.27764	5.79088	0.0447981	0.022052	0.154539	0.101502
chr1	111726869	111726967	561667	0	-	0.622449	(0.58,1]	chr1	64439	39	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	INKA2	ENSG00000197852.12	ENST00000527570.1:ENST00000357260.6:ENST00000534365.1:ENST00000444059.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	3.44157	4.27756	5.11355	0.0271806	0.00760198	0.112113	0.0561937
chr1	43594285	43594384	107393	0	+	0.606061	(0.58,1]	chr1	13240	13	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.20215	4.277145	5.35214	0.0181452	0.0136092	0.0921579	0.0811697
chr11	70743883	70743983	5061720	0	-	0.62	(0.58,1]	chr11	492701	260	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	3.20215	4.277145	5.35214	0.0181452	0.0136092	0.0921579	0.0811697
chr8	127175361	127175460	4066741	0	-	0.323232	(0.29,0.33]	chr8	387403	6	INTRON	INTRON	CASC19	ENSG00000254166.3	ENST00000642100.1:ENST00000641912.1:ENST00000641421.1:ENST00000641701.1:ENST00000641991.1:ENST00000641588.1:ENST00000642088.1:ENST00000641425.1:ENST00000641706.1:ENST00000641496.1:ENST00000641013.1:ENST00000641262.1:ENST00000641174.1:ENST00000642102.1:ENST00000641615.1:ENST00000641487.1:ENST00000641321.1:ENST00000641719.1:ENST00000642010.1:ENST00000641578.1:ENST00000641510.1:ENST00000641604.1:ENST00000641056.1:ENST00000641642.1:ENST00000641362.1:ENST00000641365.1:ENST00000642077.1:ENST00000641179.1:ENST00000642126.1:ENST00000641411.1:ENST00000641357.1:ENST00000641746.2:ENST00000641073.1:ENST00000641298.1:ENST00000641001.1:ENST00000641674.2:ENST00000641828.1:ENST00000641029.1:ENST00000641547.1:ENST00000642134.1:ENST00000641696.1:ENST00000641480.1:ENST00000641187.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	308	2	4.06334	4.277	4.49066	0.00329515	1.67832e-4	0.0368376	0.00400323
chr17	47682888	47682985	6748693	0	+	0.484536	(0.45,0.485]	chr17	679884	6	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	KPNB1	ENSG00000108424.11	ENST00000583648.6:ENST00000290158.9:ENST00000677341.1:ENST00000580573.2:ENST00000580158.2:ENST00000582126.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	821	2	3.98535	4.276805	4.56826	0.00208742	2.59974e-5	0.0287557	0.00101533
chr6	26365452	26365552	2887030	0	+	0.51	(0.485,0.523]	chr6	280810	1	SS5_PROX	SS5_PROX:INTRON	BTN3A2	ENSG00000186470.14	ENST00000396934.7:ENST00000508906.6:ENST00000532865.5:ENST00000527417.5:ENST00000530653.5:ENST00000377708.7:ENST00000524682.5:ENST00000528222.1:ENST00000532627.5:ENST00000524459.5:ENST00000356386.6:ENST00000527422.5:ENST00000528541.1:ENST00000396948.5:ENST00000532994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	82	2	3.30265	4.276565	5.25048	0.0306642	0.0059614	0.119264	0.0479866
chr11	7625991	7626091	4793073	0	+	0.47	(0.45,0.485]	chr11	459386	1	SS5_PROX	SS5_PROX:INTRON	PPFIBP2	ENSG00000166387.14	ENST00000684123.1:ENST00000299492.9:ENST00000529575.5:ENST00000533792.5:ENST00000532926.5:ENST00000684215.1:ENST00000529021.1:ENST00000528883.5:ENST00000530181.5:ENST00000532416.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	81	2	3.12123	4.2764750000000005	5.43172	0.0428769	0.00440365	0.137868	0.0393688
chr18	76403680	76403780	7179156	0	-	0.43	(0.419,0.45]	chr18	730080	230	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.46155	4.27644	5.09133	0.0586308	0.0110249	0.155565	0.0711736
chr6	158324167	158324267	3061763	0	+	0.42	(0.419,0.45]	chr6	297592	95	INTRON	INTRON	ENSG00000274023:TULP4	ENSG00000274023.1:ENSG00000130338.13	ENST00000619713.1:ENST00000367097.8:ENST00000367094.6:ENST00000616856.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	1	69	2	3.46155	4.27644	5.09133	0.0586308	0.0110249	0.155565	0.0711736
chr9	133733642	133733742	4427918	0	-	0.66	(0.58,1]	chr9	423128	4	SS5_PROX	SS5_PROX:INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000427237.6:ENST00000371867.5:ENST00000298628.6	protein_coding	protein_coding	protein_coding	protein_coding	1	81	2	3.66231	4.27619	4.89007	0.0122106	0.00872525	0.0752279	0.0612699
chr2	62894063	62894163	815851	0	+	0.44	(0.419,0.45]	chr2	92141	124	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding	4	128	2	2.08517	4.276025	6.46688	0.0416703	0.00757951	0.149021	0.0579104
chr7	112115814	112115914	3691666	0	-	0.4	(0.39,0.419]	chr7	354969	1113	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	189	2	4.26008	4.27594	4.2918	0.0072925	0.00141198	0.0567337	0.0180814
chr11	74821904	74822004	4895357	0	+	0.44	(0.419,0.45]	chr11	472484	38	INTRON	INTRON	RNF169	ENSG00000166439.6	ENST00000299563.5	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	2.92337	4.27571	5.62805	0.0333415	0.0280406	0.133139	0.113651
chr11	7625177	7625276	4793064	0	+	0.585859	(0.58,1]	chr11	459381	38	INTRON	INTRON	PPFIBP2	ENSG00000166387.14	ENST00000684123.1:ENST00000299492.9:ENST00000529575.5:ENST00000533792.5:ENST00000532926.5:ENST00000684215.1:ENST00000650027.1:ENST00000525597.5:ENST00000529021.1:ENST00000528883.5:ENST00000530181.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	2.78186	4.2756	5.76934	0.0342923	0.00849371	0.13449	0.0617717
chr14	104872655	104872755	5925938	0	+	0.7	(0.58,1]	chr14	579942	37	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	2	163	2	3.26123	4.275305	5.28938	0.0257049	2.84381e-5	0.109543	0.00108203
chr16	89426959	89427059	6661103	0	-	0.43	(0.419,0.45]	chr16	666747	82	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	92	2	2.92212	4.275085	5.62805	0.0280406	0.0141969	0.113651	0.0833845
chr10	103702806	103702906	4757128	0	-	0.59	(0.58,1]	chr10	454791	93	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	70	2	2.83384	4.27506	5.71628	0.0529065	0.00104668	0.14912	0.0146403
chr11	8683779	8683862	4794642	0	+	0.506024	(0.485,0.523]	chr11	459612	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RPL27A	ENSG00000166441.13	ENST00000531978.5:ENST00000530585.5:ENST00000524496.5:ENST00000314138.11:ENST00000532359.5:ENST00000534599.5:ENST00000530022.5:ENST00000526562.5:ENST00000525981.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	64	2	3.4289	4.27491	5.12092	0.0414411	0.00977282	0.136301	0.0664239
chr13	113330577	113330677	5753236	0	-	0.61	(0.58,1]	chr13	564094	41	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	2.43115	4.2749	6.11865	0.0309513	0.00429384	0.127822	0.042386
chr1	167760765	167760865	266814	0	+	0.44	(0.419,0.45]	chr1	31382	382	INTRON	INTRON	MPZL1	ENSG00000197965.12	ENST00000464954.1:ENST00000359523.7:ENST00000448405.5:ENST00000392121.7:ENST00000465787.5:ENST00000474859.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	83	2	2.72124	4.27486	5.82848	0.0837482	0.00242141	0.181508	0.0261589
chr14	89356615	89356715	6027673	0	-	0.4	(0.39,0.419]	chr14	591468	54	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000554005.1:ENST00000555855.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	251	2	3.47982	4.27483	5.06984	0.0133675	1.66998e-4	0.0790342	0.00398504
chr11	17918494	17918594	5014422	0	-	0.44	(0.419,0.45]	chr11	484611	4	SS5_PROX	SS5_PROX:INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528369.5:ENST00000528200.5:ENST00000529440.5:ENST00000529151.5:ENST00000532546.5:ENST00000525920.5:ENST00000532265.5:ENST00000533241.1:ENST00000525168.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	92	2	2.61235	4.27477	5.93719	0.0274539	0.0176643	0.119733	0.0909046
chr10	103698314	103698414	4757083	0	-	0.58	(0.523,0.58]	chr10	454791	48	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	65	2	2.92656	4.27457	5.62258	0.0289226	0.0193313	0.124	0.0954446
chr12	76068492	76068577	5455901	0	-	0.317647	(0.29,0.33]	chr12	536729	2	SS5_PROX	SS5_PROX:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	67	2	3.69617	4.27451	4.85285	0.0567079	0.00527084	0.154343	0.044517
chr3	136563469	136563569	1923457	0	-	0.49	(0.485,0.523]	chr3	195602	209	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2:ENST00000487065.5:ENST00000462818.1:ENST00000480733.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	64	2	3.07448	4.2743649999999995	5.47425	0.0243396	0.0214987	0.106588	0.10537
chr16	89305444	89305544	6659866	0	-	0.67	(0.58,1]	chr16	666664	1	SS3_PROX	SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1:ENST00000647539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	64	2	3.9245	4.274265	4.62403	0.0578275	0.00209574	0.154343	0.0238576
chr3	149192985	149193084	1939367	0	-	0.393939	(0.39,0.419]	chr3	197356	44	INTRON	INTRON	CP	ENSG00000047457.14	ENST00000481169.5:ENST00000264613.11:ENST00000494544.1:ENST00000490639.5:ENST00000462336.5:ENST00000489736.5:ENST00000497797.5:ENST00000471356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	136	2	3.23438	4.274115	5.31385	0.0202109	0.0071966	0.0975402	0.0543014
chr10	45896344	45896444	4678537	0	-	0.31	(0.29,0.33]	chr10	446205	1	SS3_PROX	SS3_PROX:INTRON	PARGP1	ENSG00000239883.9	ENST00000688192.1:ENST00000686367.1:ENST00000693310.1:ENST00000417555.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	64	2	3.10687	4.27411	5.44135	0.0236557	0.0204009	0.105002	0.102656
chr18	28120116	28120216	7140075	0	-	0.33	(0.29,0.33]	chr18	726157	225	INTRON	INTRON	CDH2	ENSG00000170558.10	ENST00000269141.8:ENST00000676445.1:ENST00000675708.1:ENST00000430882.6:ENST00000413878.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	88	2	2.49267	4.27395	6.05523	0.0313211	0.00839544	0.127822	0.0616149
chr16	85395033	85395133	6517021	0	+	0.62	(0.58,1]	chr16	646391	357	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	3.46232	4.27383	5.08534	0.0178328	0.00549379	0.0915706	0.0454065
chr11	43452361	43452461	4844639	0	+	0.59	(0.58,1]	chr11	463442	7	INTRON	INTRON	TTC17	ENSG00000052841.15	ENST00000039989.9:ENST00000525135.5:ENST00000525543.5:ENST00000533554.1:ENST00000418561.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	120	2	2.37779	4.27362	6.16945	0.012791	0.00387582	0.0773901	0.0401256
chr6	108562229	108562329	2975009	0	+	0.56	(0.523,0.58]	chr6	291626	4	SS5_PROX	SS5_PROX:INTRON	FOXO3	ENSG00000118689.15	ENST00000343882.10:ENST00000406360.2	protein_coding	protein_coding	protein_coding	protein_coding	2	85	2	2.85567	4.273619999999999	5.69157	0.0172851	0.0136981	0.0897247	0.0814223
chr6	158027166	158027266	3059764	0	+	0.53	(0.523,0.58]	chr6	297373	90	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.03457	4.27352	5.51247	0.0231444	0.0230387	0.109883	0.102982
chr6	158566326	158566425	3063958	0	+	0.545455	(0.523,0.58]	chr6	297687	57	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	3	132	2	2.4499	4.27334	6.09678	0.0458306	6.74499e-4	0.142336	0.0108081
chr3	13204425	13204525	1691186	0	-	0.66	(0.58,1]	chr3	176566	399	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	2.91493	4.273054999999999	5.63118	0.0259506	0.0109983	0.116361	0.0708586
chr6	349443	349541	2824329	0	+	0.561224	(0.523,0.58]	chr6	277235	6	UTR3	UTR3:EXON_MRNA:INTRON	DUSP22	ENSG00000112679.15	ENST00000344450.9:ENST00000603795.5:ENST00000419235.7:ENST00000603726.5:ENST00000604971.5:ENST00000604988.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	87	2	3.15279	4.27303	5.39327	0.0277354	0.00667201	0.112851	0.0517092
chr12	120999167	120999267	5341130	0	+	0.68	(0.58,1]	chr12	521578	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000560968.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	59	2	3.48503	4.2728649999999995	5.0607	0.029633	0.006811	0.116079	0.0524379
chr14	104777054	104777149	6057659	0	-	0.663158	(0.58,1]	chr14	594698	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000557552.1:ENST00000683722.1:ENST00000555528.5:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000544168.5:ENST00000554848.5:ENST00000682269.1:ENST00000555380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	59	2	3.48503	4.2728649999999995	5.0607	0.029633	0.006811	0.116079	0.0524379
chr1	43594581	43594680	107396	0	+	0.565657	(0.523,0.58]	chr1	13240	16	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	2	87	2	2.52319	4.27228	6.02137	0.0287266	0.00992924	0.123764	0.0671959
chr11	70762469	70762568	5061906	0	-	0.606061	(0.58,1]	chr11	492701	446	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	3.1491	4.27228	5.39546	0.0168207	0.0154006	0.0884836	0.0869771
chr17	1560898	1560998	6830758	0	-	0.53	(0.523,0.58]	chr17	690604	3	SS5_PROX	SS5_PROX:INTRON	PITPNA	ENSG00000174238.16	ENST00000313486.12:ENST00000575288.5:ENST00000576722.5:ENST00000576761.5:ENST00000576010.6:ENST00000573231.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	87	2	2.52319	4.27228	6.02137	0.0287266	0.00992924	0.123764	0.0671959
chr18	77018977	77019077	7180504	0	-	0.46	(0.45,0.485]	chr18	730157	13	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000580402.5:ENST00000580473.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000495162.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	88	2	3.47219	4.272195	5.0722	0.0246436	0.00988295	0.107246	0.0664239
chr15	85038211	85038311	6175156	0	+	0.45	(0.419,0.45]	chr15	607383	555	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	84	2	2.97363	4.272069999999999	5.57051	0.0596114	0.00441471	0.157889	0.0393688
chr20	47354949	47355049	7570881	0	-	0.46	(0.45,0.485]	chr20	791103	1	SS5_PROX	SS5_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5	protein_coding	protein_coding	protein_coding	protein_coding	2	174	2	4.02085	4.27178	4.52271	0.00965675	6.22398e-4	0.0660792	0.0101764
chr6	128501441	128501541	3256985	0	-	0.29	[0,0.29]	chr6	315230	92	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000524534.5:ENST00000525459.1:ENST00000392449.4:ENST00000532751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	62	2	3.031	4.27123	5.51146	0.0223108	0.0147753	0.108193	0.0829204
chr20	49148689	49148788	7572603	0	-	0.535354	(0.523,0.58]	chr20	791289	124	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	2	85	2	2.75313	4.271185	5.78924	0.0173428	0.0147166	0.0927775	0.0826843
chr4	119213718	119213801	2114301	0	+	0.445783	(0.419,0.45]	chr4	214907	1	SS3_PROX	SS3_PROX:INTRON	USP53	ENSG00000145390.12	ENST00000514665.1:ENST00000692078.1:ENST00000450251.6:ENST00000274030.11:ENST00000507597.5:ENST00000514305.5:ENST00000688980.1:ENST00000510737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	87	2	3.18837	4.270770000000001	5.35317	0.0439311	0.00714797	0.139875	0.0541241
chr8	133269015	133269114	4084009	0	-	0.484848	(0.45,0.485]	chr8	388324	15	INTRON	INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000517745.2:ENST00000676005.1:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674536.1:ENST00000675357.1:ENST00000675600.1:ENST00000674902.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	239	2	3.35716	4.27077	5.18438	0.00817261	0.00773818	0.0606234	0.0568726
chr11	65085571	65085664	4869633	0	+	0.408602	(0.39,0.419]	chr11	467665	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ZFPL1	ENSG00000162300.13	ENST00000650243.1:ENST00000294258.8:ENST00000531761.5:ENST00000453524.6:ENST00000526289.5:ENST00000526334.5:ENST00000526440.1:ENST00000533216.1:ENST00000526945.5:ENST00000532200.1:ENST00000530488.1:ENST00000530744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	67	2	3.34529	4.27054	5.19579	0.0469937	0.0137041	0.143232	0.0814223
chr16	89435120	89435220	6661185	0	-	0.42	(0.419,0.45]	chr16	666753	34	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	95	2	3.17699	4.2704699999999995	5.36395	0.0407485	0.00794315	0.135868	0.0578938
chr10	103699911	103700011	4757099	0	-	0.64	(0.58,1]	chr10	454791	64	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	72	2	3.23007	4.270215	5.31036	0.0271644	0.00312721	0.112113	0.0311915
chr5	97030528	97030628	2489685	0	+	0.38	(0.36,0.39]	chr5	248102	21	UTR3	UTR3:EXON_MRNA	LNPEP	ENSG00000113441.16	ENST00000231368.10	protein_coding	protein_coding	protein_coding	protein_coding	2	90	2	2.67993	4.270155	5.86038	0.0231725	0.0174081	0.109982	0.0901374
chr15	98959738	98959837	6196475	0	+	0.40404	(0.39,0.419]	chr15	609806	24	UTR3	UTR3:EXON_MRNA	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.04938	4.27013	5.49088	0.0309972	0.0253994	0.119758	0.115502
chr15	99827534	99827634	6200089	0	+	0.41	(0.39,0.419]	chr15	610068	103	INTRON	INTRON	ENSG00000259363	ENSG00000259363.6	ENST00000559714.6:ENST00000653567.1:ENST00000661885.1:ENST00000670817.1:ENST00000560059.6:ENST00000670627.1:ENST00000668719.1:ENST00000656644.1:ENST00000662069.1:ENST00000660061.1:ENST00000664300.1:ENST00000558188.2:ENST00000662997.1:ENST00000670236.1	lncRNA	lncRNA	lncRNA	lncRNA	1	67	2	3.04938	4.27013	5.49088	0.0309972	0.0253994	0.119758	0.115502
chr10	47532182	47532282	4680504	0	-	0.57	(0.523,0.58]	chr10	446443	83	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	1	67	2	3.75634	4.27009	4.78384	0.0663135	0.00434055	0.162385	0.0390182
chr16	8856885	8856981	6546166	0	-	0.583333	(0.58,1]	chr16	651451	12	INTRON	INTRON	CARHSP1	ENSG00000153048.11	ENST00000396593.6:ENST00000611932.4:ENST00000618335.4:ENST00000619881.4:ENST00000610831.4:ENST00000614449.4:ENST00000311052.10:ENST00000561530.5:ENST00000567554.5:ENST00000565287.5:ENST00000567908.5:ENST00000570125.5:ENST00000568117.5:ENST00000568968.1	protein_coding	protein_coding	protein_coding	protein_coding	2	148	2	4.13566	4.26964	4.40362	0.00472191	5.10596e-4	0.0449204	0.00886422
chr16	85376241	85376341	6516833	0	+	0.61	(0.58,1]	chr16	646391	169	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	2.55596	4.26959	5.98322	0.0534085	0.00562007	0.167062	0.0493906
chr19	34393055	34393151	7243281	0	+	0.614583	(0.58,1]	chr19	741719	10	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000589985.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	67	2	2.55596	4.26959	5.98322	0.0534085	0.00562007	0.167062	0.0493906
chr2	186127110	186127210	1338574	0	-	0.42	(0.419,0.45]	chr2	142311	82	INTRON	INTRON	LINC01473	ENSG00000237877.7	ENST00000658984.1:ENST00000658990.1:ENST00000655126.1:ENST00000667839.1:ENST00000670612.1:ENST00000668985.1:ENST00000661574.1:ENST00000666677.1:ENST00000665629.1:ENST00000671116.1:ENST00000419719.2:ENST00000667056.1:ENST00000671599.1	lncRNA	lncRNA	lncRNA	lncRNA	3	253	2	4.10818	4.269405	4.43063	0.00595002	7.4649e-4	0.0506428	0.0115837
chr1	19145007	19145102	409423	0	-	0.326316	(0.29,0.33]	chr1	47628	1	SS3_PROX	SS3_PROX:INTRON	UBR4	ENSG00000127481.15	ENST00000375254.8:ENST00000425413.5:ENST00000417040.1:ENST00000465036.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	3.05751	4.26929	5.48107	0.0226356	0.0222022	0.108193	0.101857
chr1	12609874	12609974	402703	0	-	0.6	(0.58,1]	chr1	46226	137	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	77	2	3.51497	4.269055	5.02314	0.0161632	0.00638322	0.0872435	0.0501889
chr6	2491465	2491565	2826857	0	+	0.41	(0.39,0.419]	chr6	277337	20	INTRON	INTRON	GMDS-DT	ENSG00000250903.10	ENST00000659523.1	lncRNA	lncRNA	lncRNA	lncRNA	1	84	2	3.13002	4.26887	5.40772	0.0456475	0.00585126	0.142336	0.0474117
chr3	71319815	71319915	1828643	0	-	0.57	(0.523,0.58]	chr3	188221	7	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000648783.1:ENST00000650156.1:ENST00000649133.1:ENST00000493010.2:ENST00000649145.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	105	2	2.3839	4.268785	6.15367	0.0679164	5.76607e-4	0.164413	0.00963379
chr17	61395945	61396044	6939759	0	-	0.575758	(0.523,0.58]	chr17	707563	6	INTRON	INTRON	TBX2-AS1	ENSG00000267280.6	ENST00000591313.6:ENST00000590421.1:ENST00000592009.1:ENST00000589814.5	lncRNA	lncRNA	lncRNA	lncRNA	1	66	2	3.69181	4.26875	4.84569	0.0610722	0.00510333	0.158506	0.0433857
chr2	38326405	38326505	1123824	0	-	0.32	(0.29,0.33]	chr2	123019	70	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	77	2	3.05307	4.268689999999999	5.48431	0.0438985	0.00360762	0.139792	0.0342681
chr9	127556451	127556551	4412068	0	-	0.31	(0.29,0.33]	chr9	420485	243	INTRON	INTRON	NIBAN2	ENSG00000136830.12	ENST00000373314.7:ENST00000373312.4:ENST00000478917.1:ENST00000468379.1:ENST00000484348.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	77	2	3.05307	4.268689999999999	5.48431	0.0438985	0.00360762	0.139792	0.0342681
chr2	100903832	100903932	859250	0	+	0.58	(0.523,0.58]	chr2	97321	568	INTRON	INTRON	NPAS2	ENSG00000170485.17	ENST00000335681.10:ENST00000427413.5	protein_coding	protein_coding	protein_coding	protein_coding	2	168	2	3.76107	4.26868	4.77629	0.0141879	2.57885e-4	0.0816012	0.00545544
chr14	89255510	89255610	6026653	0	-	0.54	(0.523,0.58]	chr14	591432	243	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	63	2	3.229	4.2684750000000005	5.30795	0.0315825	0.0152072	0.120781	0.0861813
chr1	12592402	12592501	402527	0	-	0.535354	(0.523,0.58]	chr1	46222	114	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	67	2	2.74768	4.26846	5.78924	0.0411359	0.0147166	0.147756	0.0826843
chr22	42978055	42978155	7823913	0	-	0.41	(0.39,0.419]	chr22	820626	183	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	90	2	2.67784	4.26843	5.85902	0.0233188	0.0177874	0.110098	0.0914273
chrX	9654515	9654612	7844354	0	+	0.546392	(0.523,0.58]	chrX	822453	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	102	2	2.62686	4.268415	5.90997	0.0142983	0.012016	0.0833845	0.0743424
chr6	166952840	166952938	3302021	0	-	0.561224	(0.523,0.58]	chr6	319750	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000499370.6:ENST00000358165.7:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	433	2	3.56926	4.2682	4.96714	0.0108948	0.00344444	0.0706366	0.037649
chr6	144631564	144631664	3023383	0	+	0.36	(0.33,0.36]	chr6	295440	476	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000367526.8	protein_coding	protein_coding	protein_coding	protein_coding	3	107	2	2.34906	4.268135	6.18721	0.0293388	0.00877878	0.125102	0.0630845
chr6	36680173	36680273	2906391	0	+	0.53	(0.523,0.58]	chr6	285236	3	SS3_PROX	SS3_PROX:INTRON	CDKN1A	ENSG00000124762.14	ENST00000615513.4:ENST00000448526.6:ENST00000459970.1:ENST00000405375.5:ENST00000244741.10:ENST00000373711.3:ENST00000478800.1:ENST00000462537.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	269	2	3.97445	4.268095000000001	4.56174	0.00322317	3.6362e-4	0.0362983	0.00699766
chr10	75884724	75884824	4525016	0	+	0.45	(0.419,0.45]	chr10	432292	8	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	69	2	3.4957	4.268065	5.04043	0.0625897	0.0102234	0.160305	0.0678072
chr6	137869127	137869226	3010378	0	+	0.484848	(0.45,0.485]	chr6	294494	10	INTRON	INTRON	TNFAIP3	ENSG00000118503.16	ENST00000421450.1:ENST00000612899.5:ENST00000420009.5:ENST00000237289.8:ENST00000433680.1	protein_coding	protein_coding	protein_coding	protein_coding	2	173	2	3.92656	4.26798	4.6094	0.0114063	4.87276e-4	0.0723462	0.00859082
chr16	89430955	89431055	6661143	0	-	0.59	(0.58,1]	chr16	666748	3	SS5_PROX	SS5_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	507	2	3.65626	4.267835	4.87941	0.00245276	5.84976e-6	0.0312688	3.52257e-4
chr1	43594877	43594976	107399	0	+	0.50505	(0.485,0.523]	chr1	13240	19	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	2	85	2	2.81013	4.267715	5.7253	0.0162644	0.0154038	0.0873195	0.0869771
chr13	51964077	51964175	5716697	0	-	0.428571	(0.419,0.45]	chr13	560952	18	INTRON	INTRON	ATP7B	ENSG00000123191.16	ENST00000242839.10:ENST00000344297.9:ENST00000674147.1:ENST00000448424.7:ENST00000634620.1:ENST00000634296.1:ENST00000400370.8:ENST00000634844.1:ENST00000673772.1:ENST00000634308.1:ENST00000418097.7:ENST00000400366.6:ENST00000635406.1:ENST00000482841.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	110	2	2.39114	4.2676750000000006	6.14421	0.0285497	0.0127879	0.123177	0.0769397
chr4	38915573	38915672	2031420	0	+	0.525253	(0.523,0.58]	chr4	207358	1	INTRON	INTRON	FAM114A1	ENSG00000197712.12	ENST00000515037.5:ENST00000358869.5:ENST00000512889.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	66	2	2.80981	4.26734	5.72487	0.0364868	0.0163679	0.139793	0.0875379
chr14	104778571	104778663	6057675	0	-	0.608696	(0.58,1]	chr14	594699	1	INTRON	INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000683722.1:ENST00000555528.5:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000554848.5:ENST00000682269.1:ENST00000555380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	60	2	2.97713	4.26697	5.55681	0.0226795	0.0126042	0.108193	0.0761905
chr9	134348316	134348416	4260906	0	+	0.59	(0.58,1]	chr9	406311	213	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	60	2	2.97713	4.26697	5.55681	0.0226795	0.0126042	0.108193	0.0761905
chr9	129609578	129609678	4250926	0	+	0.65	(0.58,1]	chr9	404742	4	SS5_PROX	SS5_PROX:INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	2	100	2	2.89838	4.266905	5.63543	0.02321	0.00131165	0.10341	0.0171898
chr16	1727747	1727846	6371213	0	+	0.666667	(0.58,1]	chr16	628837	27	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000685565.1:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	70	2	2.7038	4.26672	5.82964	0.0648563	7.58111e-4	0.162218	0.0117078
chr6	63640783	63640882	2934310	0	+	0.343434	(0.33,0.36]	chr6	288790	36	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	67	2	2.88577	4.266395	5.64702	0.0339073	0.0212683	0.133585	0.0996805
chr9	83537384	83537484	4325925	0	-	0.57	(0.523,0.58]	chr9	413150	698	INTRON	INTRON	FRMD3	ENSG00000172159.16	ENST00000376438.5:ENST00000304195.8	protein_coding	protein_coding	protein_coding	protein_coding	2	85	2	2.98195	4.266035	5.55012	0.0217068	0.010154	0.100615	0.0677546
chr17	79981862	79981962	6981730	0	-	0.59	(0.58,1]	chr17	713057	287	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7:ENST00000571872.1	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.09402	4.26577	5.43752	0.0174733	0.0156166	0.0928044	0.0849828
chr17	38728995	38729095	6729373	0	+	0.58	(0.523,0.58]	chr17	676371	35	UTR3	UTR3:EXON_MRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5	protein_coding	protein_coding	protein_coding	protein_coding	6	425	2	3.52823	4.265665	5.0031	0.00536947	3.05098e-5	0.0481886	0.00114349
chr15	25018657	25018755	6064040	0	+	0.336735	(0.33,0.36]	chr15	595414	36	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	5	137	2	2.41659	4.26542	6.11425	0.0158146	0.00993822	0.0886366	0.0672261
chr3	194475620	194475719	1979629	0	-	0.353535	(0.33,0.36]	chr3	201444	75	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	88	2	2.75176	4.265255	5.77875	0.0191705	0.0172683	0.0994526	0.0897247
chr2	127740152	127740252	1267007	0	-	0.36	(0.33,0.36]	chr2	136574	17	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5	protein_coding	protein_coding	protein_coding	protein_coding	3	106	2	2.54645	4.265124999999999	5.9838	0.019106	0.0123642	0.0994227	0.0758857
chr1	211795788	211795887	655042	0	-	0.30303	(0.29,0.33]	chr1	77269	22	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.56103	4.265085	4.96914	0.0481918	0.00731654	0.144601	0.0550721
chr20	63898409	63898508	7509812	0	+	0.515152	(0.485,0.523]	chr20	783627	27	INTRON	INTRON	DNAJC5	ENSG00000101152.11	ENST00000360864.9:ENST00000470551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	104	2	2.83777	4.264885	5.692	0.0171772	0.0086818	0.0895975	0.0612699
chr20	61977211	61977305	7582891	0	-	0.648936	(0.58,1]	chr20	792277	5	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000474089.5:ENST00000692470.1:ENST00000252996.9:ENST00000436129.2:ENST00000608458.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	198	2	3.92273	4.26393	4.60513	0.0017275	5.62865e-4	0.0257605	0.00949677
chr17	77216922	77217011	6803145	0	+	0.258427	[0,0.29]	chr17	686686	5	UTR3	UTR3:EXON_MRNA	SEC14L1	ENSG00000129657.16	ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.52843	4.263835	4.99924	0.0347661	0.00712139	0.126529	0.0541241
chr13	33214898	33214998	5684746	0	-	0.42	(0.419,0.45]	chr13	558196	90	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	91	2	2.86526	4.26369	5.66212	0.0266819	0.0160871	0.111563	0.0896852
chr21	43728729	43728814	7623881	0	+	0.729412	(0.58,1]	chr21	796697	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000438837.1:ENST00000498040.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	71	2	3.16566	4.2635950000000005	5.36153	0.0304114	0.00273899	0.11845	0.028553
chr13	112818703	112818803	5653834	0	+	0.51	(0.485,0.523]	chr13	554938	21	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000459908.5:ENST00000418678.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	102	2	2.55961	4.26339	5.96717	0.0169478	0.0108319	0.0923809	0.0707085
chr12	26703709	26703808	5400295	0	-	0.30303	(0.29,0.33]	chr12	528692	77	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000540791.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	3.0064	4.26306	5.51972	0.0251671	0.0208628	0.114704	0.0991037
chr1	51734092	51734191	123746	0	+	0.424242	(0.419,0.45]	chr1	15354	36	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000484890.5:ENST00000532975.5:ENST00000534040.5:ENST00000527631.5:ENST00000531828.5:ENST00000361556.9:ENST00000473207.6:ENST00000533884.5:ENST00000481937.5:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	93	2	3.08037	4.26242	5.44447	0.0364384	0.00993718	0.128173	0.0666391
chr3	50052850	50052949	1468224	0	+	0.454545	(0.45,0.485]	chr3	157177	42	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1:ENST00000446471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	65	2	3.46316	4.26227	5.06138	0.0492008	0.00952494	0.146142	0.0650078
chr11	70765966	70766066	5061941	0	-	0.46	(0.45,0.485]	chr11	492701	481	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	91	2	2.3351	4.26226	6.18942	0.0438295	0.00844217	0.153511	0.0617623
chr1	213990181	213990281	339377	0	+	0.49	(0.485,0.523]	chr1	38088	4	SS5_PROX	SS5_PROX:INTRON	PROX1	ENSG00000117707.16	ENST00000471129.1:ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2:ENST00000607425.1	protein_coding	protein_coding	protein_coding	protein_coding	3	226	2	4.11191	4.262135	4.41236	0.0075144	2.01679e-4	0.0576451	0.00457038
chr6	144468541	144468640	3021719	0	+	0.383838	(0.36,0.39]	chr6	295268	53	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8	protein_coding	protein_coding	protein_coding	protein_coding	2	184	2	4.15315	4.262055	4.37096	0.00865815	0.00114179	0.0623824	0.0156079
chr20	64271949	64272042	7511232	0	+	0.548387	(0.523,0.58]	chr20	783908	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609818.1:ENST00000266078.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	95	2	3.76107	4.261985	4.7629	0.0167014	0.0141879	0.0917029	0.0816012
chr19	51359555	51359653	7399186	0	-	0.44898	(0.419,0.45]	chr19	769742	26	INTRON	INTRON	ETFB	ENSG00000105379.10	ENST00000309244.9:ENST00000596253.1:ENST00000593992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	201	2	4.07217	4.26187	4.45157	0.00573722	0.00262794	0.0499133	0.027842
chr4	139667474	139667573	2134029	0	+	0.535354	(0.523,0.58]	chr4	216777	10	INTRON	INTRON	MGST2	ENSG00000085871.9	ENST00000616265.4:ENST00000265498.6:ENST00000506797.5:ENST00000515137.5:ENST00000502587.1:ENST00000503816.1:ENST00000515067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	117	2	3.03043	4.261825	5.49322	0.0241245	0.00324246	0.106588	0.0319521
chr16	50608760	50608860	6452015	0	+	0.5	(0.485,0.523]	chr16	639907	4	SS5_PROX	SS5_PROX:INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	3.17158	4.261625	5.35167	0.0294163	0.017456	0.116079	0.0928044
chr15	52774109	52774209	6267259	0	-	0.45	(0.419,0.45]	chr15	617751	159	INTRON	INTRON	ONECUT1	ENSG00000169856.9	ENST00000305901.7:ENST00000561401.3:ENST00000560699.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	73	2	2.58571	4.26145	5.93719	0.0613171	0.0176643	0.18013	0.0909046
chr17	38726197	38726297	6729345	0	+	0.68	(0.58,1]	chr17	676371	7	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MLLT6	ENSG00000275023.5	ENST00000621332.5:ENST00000619356.1:ENST00000615741.1:ENST00000615441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	437	2	4.19502	4.26142	4.32782	9.71785e-4	4.14262e-5	0.0187436	0.00143658
chr2	108587519	108587617	871483	0	+	0.357143	(0.33,0.36]	chr2	98292	68	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1:ENST00000695519.1	protein_coding	protein_coding	protein_coding	protein_coding	2	89	2	2.53891	4.261355	5.9838	0.0300873	0.0123642	0.126768	0.0758857
chr2	235504141	235504241	1062637	0	+	0.4	(0.39,0.419]	chr2	115651	89	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	334	2	3.89812	4.261145	4.62417	0.00641798	1.60486e-4	0.0529785	0.00387312
chr10	79221772	79221872	4533579	0	+	0.63	(0.58,1]	chr10	432457	51	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	3	198	2	3.56178	4.2610850000000005	4.96039	0.00626219	8.61583e-5	0.0523832	0.00245309
chr16	81565676	81565776	6508950	0	+	0.59	(0.58,1]	chr16	645911	698	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.06331	4.2610149999999996	5.45872	0.036259	0.00211999	0.127941	0.0239744
chr19	6229082	6229180	7321302	0	-	0.612245	(0.58,1]	chr19	756087	16	INTRON	INTRON	MLLT1	ENSG00000130382.9	ENST00000252674.9	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.06331	4.2610149999999996	5.45872	0.036259	0.00211999	0.127941	0.0239744
chr17	72560118	72560218	6963912	0	-	0.48	(0.45,0.485]	chr17	710389	257	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	3	108	2	2.94329	4.260915000000001	5.57854	0.0230065	0.00708168	0.102982	0.054056
chr16	18843941	18844039	6560189	0	-	0.255102	[0,0.29]	chr16	654007	11	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000563448.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	72	2	2.62751	4.26077	5.89403	0.0743497	9.73966e-4	0.171851	0.0139544
chr7	23392388	23392487	3552422	0	-	0.222222	[0,0.29]	chr7	343200	294	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	72	2	2.62751	4.26077	5.89403	0.0743497	9.73966e-4	0.171851	0.0139544
chr2	77528373	77528473	1203314	0	-	0.38	(0.36,0.39]	chr2	130025	61	INTRON	INTRON	LRRTM4	ENSG00000176204.14	ENST00000456154.1	protein_coding	protein_coding	protein_coding	protein_coding	1	95	2	3.59342	4.260384999999999	4.92735	0.0221422	0.0160072	0.101784	0.0894586
chr2	119766179	119766279	883653	0	+	0.34	(0.33,0.36]	chr2	100098	54	INTRON	INTRON	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000460162.1:ENST00000420482.5:ENST00000460289.5:ENST00000488279.6:ENST00000485247.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	88	2	2.90791	4.26001	5.61211	0.022456	0.0135414	0.102751	0.0811697
chr3	149539815	149539915	1940012	0	-	0.41	(0.39,0.419]	chr3	197467	2	SS5_PROX	SS5_PROX:INTRON	WWTR1	ENSG00000018408.15	ENST00000465804.5:ENST00000360632.8:ENST00000467467.5:ENST00000471586.5:ENST00000494754.1:ENST00000472417.1:ENST00000485244.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	87	2	3.30636	4.2599	5.21344	0.0350604	0.00893514	0.12704	0.0620271
chr11	70657630	70657730	5060851	0	-	0.49	(0.485,0.523]	chr11	492672	28	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	85	2	2.66833	4.259815	5.8513	0.0211923	0.0131886	0.104042	0.0785398
chr3	128735252	128735352	1563758	0	+	0.39	(0.36,0.39]	chr3	165351	85	INTRON	INTRON	RAB7A	ENSG00000075785.14	ENST00000676214.1:ENST00000675864.1:ENST00000675712.1:ENST00000676425.1:ENST00000490093.6:ENST00000675342.1:ENST00000265062.8:ENST00000674748.1:ENST00000493186.6:ENST00000482525.5:ENST00000491681.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	113	2	2.61578	4.259615	5.90345	0.0530576	0.00181603	0.149442	0.0215865
chr16	24985097	24985197	6570785	0	-	0.51	(0.485,0.523]	chr16	655806	57	INTRON	INTRON	ARHGAP17	ENSG00000140750.17	ENST00000289968.11:ENST00000303665.9:ENST00000575975.5:ENST00000455311.6:ENST00000571480.5:ENST00000573625.5:ENST00000573449.5:ENST00000575447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	77	2	2.98607	4.259575	5.53308	0.0503063	0.00304306	0.148176	0.0306636
chr10	49858344	49858442	4685354	0	-	0.336735	(0.33,0.36]	chr10	446776	5	INTRON	INTRON	PARG	ENSG00000227345.9	ENST00000402038.7:ENST00000616448.2:ENST00000614063.4:ENST00000610922.1:ENST00000611974.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	65	2	3.22121	4.259375	5.29754	0.0360263	0.0171454	0.127853	0.0923809
chr10	79113619	79113719	4532491	0	+	0.43	(0.419,0.45]	chr10	432420	440	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.1968	4.259375	5.32195	0.0431627	0.0193853	0.138403	0.0994526
chr1	14942324	14942423	43830	0	+	0.444444	(0.419,0.45]	chr1	4384	119	INTRON	INTRON	KAZN	ENSG00000189337.17	ENST00000636203.1:ENST00000376030.7:ENST00000491547.1:ENST00000503743.5:ENST00000361144.9:ENST00000400798.6:ENST00000376028.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	67	2	3.15468	4.259315	5.36395	0.0407485	0.0211324	0.135868	0.103778
chr22	20083234	20083331	7686484	0	+	0.474227	(0.45,0.485]	chr22	804119	22	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000457069.1	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.1756	4.2593049999999995	5.34301	0.0328801	0.0180699	0.122593	0.0953579
chr21	37366867	37366962	7618967	0	+	0.747368	(0.58,1]	chr21	796005	2	UTR5	UTR5:EXON_MRNA:INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1	protein_coding	protein_coding	protein_coding	protein_coding	5	119	2	2.18416	4.259265	6.33437	0.0208399	0.00276493	0.102799	0.0332418
chr12	57148780	57148880	5240605	0	+	0.64	(0.58,1]	chr12	510194	4	SS3_PROX	SS3_PROX:INTRON	LRP1	ENSG00000123384.14	ENST00000243077.8:ENST00000553277.5:ENST00000338962.8:ENST00000554174.1	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	2.78186	4.25894	5.73602	0.0342923	0.00904546	0.13449	0.0637469
chr19	2050008	2050105	7308295	0	-	0.71134	(0.58,1]	chr19	753574	30	INTRON	INTRON	MKNK2	ENSG00000099875.16	ENST00000309340.11:ENST00000250896.9:ENST00000586828.5:ENST00000589509.5:ENST00000589534.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	62	2	2.78186	4.25894	5.73602	0.0342923	0.00904546	0.13449	0.0637469
chr2	11579028	11579126	720663	0	+	0.591837	(0.58,1]	chr2	84132	2	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000263834.9:ENST00000389825.7:ENST00000381483.6:ENST00000234142.9	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.56821	4.258515	4.94882	0.0354433	0.00550024	0.127188	0.0454065
chr7	1121957	1122057	3527448	0	-	0.65	(0.58,1]	chr7	340591	121	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	61	2	2.84993	4.258455	5.66698	0.0297842	0.0102927	0.126591	0.0684871
chr7	73599025	73599125	3602847	0	-	0.4	(0.39,0.419]	chr7	347629	1	SS5_PROX	SS5_PROX:INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	249	2	3.90027	4.258265	4.61626	0.00386069	0.00121633	0.0401256	0.0162693
chr2	240615189	240615289	1075091	0	+	0.64	(0.58,1]	chr2	116637	78	INTRON	INTRON	CAPN10:GPR35	ENSG00000142330.20:ENSG00000178623.13	ENST00000270364.11:ENST00000319838.10:ENST00000403859.1	protein_coding	protein_coding	protein_coding	protein_coding	2	79	2	3.16413	4.258135	5.35214	0.0181452	0.00515052	0.0921579	0.0436542
chr7	47525936	47526036	3589072	0	-	0.5	(0.485,0.523]	chr7	346138	186	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	2.85817	4.25804	5.65791	0.0334631	0.0181582	0.133139	0.0921579
chr17	80859694	80859794	6812067	0	+	0.63	(0.58,1]	chr17	687891	14	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	3.03676	4.257575	5.47839	0.0198789	0.0145198	0.100864	0.0823104
chr1	43594779	43594877	107398	0	+	0.581633	(0.58,1]	chr1	13240	18	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.35051	4.2575199999999995	5.16453	0.0249802	0.00953058	0.10758	0.0650078
chr16	87740423	87740523	6656485	0	-	0.71	(0.58,1]	chr16	665893	2	SS5_PROX	SS5_PROX:INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	58	2	3.35051	4.2575199999999995	5.16453	0.0249802	0.00953058	0.10758	0.0650078
chr19	942419	942518	7185270	0	+	0.727273	(0.58,1]	chr19	730741	93	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	277	2	3.31109	4.25703	5.20297	0.00117623	4.4721e-4	0.0158504	0.0121697
chr6	144432537	144432637	3021342	0	+	0.46	(0.45,0.485]	chr6	295188	24	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8	protein_coding	protein_coding	protein_coding	protein_coding	2	86	2	2.83043	4.2568649999999995	5.6833	0.0195193	0.0153861	0.0955413	0.0869771
chr17	29130882	29130982	6876471	0	-	0.57	(0.523,0.58]	chr17	697995	1	SS5_PROX	SS5_PROX:INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000590242.5:ENST00000528564.2:ENST00000528322.6:ENST00000585573.6:ENST00000533420.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	64	2	2.92656	4.25668	5.5868	0.0289226	0.020474	0.124	0.0979776
chr11	65444641	65444741	4871788	0	+	0.65	(0.58,1]	chr11	468177	220	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	124	7502	2	3.90287	4.25645	4.61003	7.98953e-5	1.90869e-5	0.00496688	8.15252e-4
chr13	97345606	97345706	5632041	0	+	0.26	[0,0.29]	chr13	553194	20	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	134	2	2.78304	4.256185	5.72933	0.00996568	0.00510876	0.0673647	0.0434253
chr22	50711938	50712038	7755305	0	+	0.69	(0.58,1]	chr22	812782	3	SS5_PROX	SS5_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	63	2	2.71042	4.2561599999999995	5.8019	0.0396128	0.007984	0.143388	0.0596361
chr10	28678473	28678572	4470348	0	+	0.393939	(0.39,0.419]	chr10	427720	1	INTRON	INTRON	BAMBI	ENSG00000095739.11	ENST00000497699.1:ENST00000375533.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	66	2	3.22582	4.256125	5.28643	0.041475	0.0176855	0.136301	0.093839
chr2	160403593	160403692	1292581	0	-	0.373737	(0.36,0.39]	chr2	138791	11	INTRON	INTRON	RBMS1	ENSG00000153250.21	ENST00000348849.8:ENST00000474820.5:ENST00000409289.6:ENST00000409075.5:ENST00000409972.5:ENST00000491781.5:ENST00000428519.1:ENST00000477486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	66	2	3.26869	4.25593	5.24317	0.0433841	0.016118	0.138813	0.0897679
chr17	15469914	15470014	6860134	0	-	0.43	(0.419,0.45]	chr17	695071	24	INTRON	INTRON	TVP23C-CDRT4:CDRT4	ENSG00000259024.6:ENSG00000239704.11	ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	67	2	3.27753	4.2558	5.23407	0.0486006	0.0163857	0.145074	0.0910838
chr6	37857798	37857898	2909222	0	+	0.45	(0.419,0.45]	chr6	285643	374	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.27753	4.2558	5.23407	0.0486006	0.0163857	0.145074	0.0910838
chr3	171732744	171732843	1957775	0	-	0.414141	(0.39,0.419]	chr3	199043	63	INTRON	INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9:ENST00000498278.5:ENST00000475273.6:ENST00000440204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	89	2	2.7438	4.255685	5.76757	0.0204917	0.0202704	0.102067	0.0979776
chr6	169622151	169622251	3304078	0	-	0.46	(0.45,0.485]	chr6	319826	81	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	79	2	2.49062	4.255655	6.02069	0.104221	0.00101549	0.19835	0.0143256
chr9	124334401	124334500	4236275	0	+	0.575758	(0.523,0.58]	chr9	402147	66	INTRON	INTRON	NEK6	ENSG00000119408.17	ENST00000373603.5:ENST00000540326.5:ENST00000320246.10:ENST00000373600.7:ENST00000545174.5:ENST00000444973.5:ENST00000454453.5:ENST00000425237.5:ENST00000546191.5:ENST00000422297.5:ENST00000539416.5:ENST00000394199.6	protein_coding	protein_coding	protein_coding	protein_coding	2	111	2	2.85171	4.25565	5.65959	0.032571	0.0021416	0.122289	0.0240825
chr19	13139580	13139678	7212649	0	+	0.642857	(0.58,1]	chr19	736450	13	UTR3	UTR3:EXON_MRNA	NACC1	ENSG00000160877.6	ENST00000292431.5	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	2.61009	4.25532	5.90055	0.0747426	6.1741e-4	0.172361	0.0101143
chr16	81678174	81678274	6510092	0	+	0.59	(0.58,1]	chr16	645975	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	2.83384	4.25513	5.67642	0.0529065	0.00117039	0.14912	0.0157899
chr8	727852	727951	3933009	0	-	0.636364	(0.58,1]	chr8	376060	115	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	69	2	2.83384	4.25513	5.67642	0.0529065	0.00117039	0.14912	0.0157899
chr20	36857379	36857478	7557075	0	-	0.50505	(0.485,0.523]	chr20	789155	176	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	3.38908	4.255	5.12092	0.0414411	0.0107186	0.136301	0.0700744
chr12	132792677	132792775	5540388	0	-	0.693878	(0.58,1]	chr12	546816	10	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	58	2	3.20215	4.25481	5.30747	0.0196049	0.0136092	0.0955413	0.0811697
chr19	1169643	1169742	7305749	0	-	0.626263	(0.58,1]	chr19	753058	6	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.20215	4.25481	5.30747	0.0196049	0.0136092	0.0955413	0.0811697
chr20	36855485	36855585	7557056	0	-	0.59	(0.58,1]	chr20	789155	157	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.20215	4.25481	5.30747	0.0196049	0.0136092	0.0955413	0.0811697
chr2	239348480	239348580	1392195	0	-	0.46	(0.45,0.485]	chr2	148752	240	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	155	2	1.96447	4.25471	6.54495	0.0330264	0.00450754	0.132752	0.0436138
chr2	235516030	235516130	1062756	0	+	0.66	(0.58,1]	chr2	115651	208	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	60	2	2.91493	4.2547	5.59447	0.0259506	0.0117666	0.116361	0.0737098
chr15	67134419	67134518	6139764	0	+	0.50505	(0.485,0.523]	chr15	603952	59	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1:ENST00000559092.1:ENST00000560175.5:ENST00000540846.6:ENST00000558894.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	63	2	3.07448	4.254505	5.43453	0.0258944	0.0214987	0.109555	0.10537
chr10	103691429	103691529	4757010	0	-	0.57	(0.523,0.58]	chr10	454779	134	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	76	2	2.84901	4.2543	5.65959	0.0617545	0.0021416	0.158869	0.0240825
chr17	6692743	6692843	6845997	0	-	0.49	(0.485,0.523]	chr17	693297	3	SS5_PROX	SS5_PROX:INTRON	SLC13A5	ENSG00000141485.17	ENST00000433363.7:ENST00000293800.10:ENST00000381074.8:ENST00000573648.5:ENST00000572727.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	490	2	3.55115	4.254265	4.95738	6.5023e-4	5.87864e-4	0.0142143	0.0105094
chrX	15678350	15678448	7848292	0	+	0.459184	(0.45,0.485]	chrX	823010	16	INTRON	INTRON	CA5BP1	ENSG00000186312.10	ENST00000380336.5:ENST00000448692.5:ENST00000380334.6:ENST00000380333.5:ENST00000380331.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	65	2	3.49993	4.25426	5.00859	0.052901	0.00874614	0.14912	0.0613439
chr22	28932079	28932179	7705762	0	+	0.47	(0.45,0.485]	chr22	806321	142	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7:ENST00000402174.5	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.67093	4.25424	4.83755	0.06646	0.00582542	0.162385	0.0473208
chr3	172091481	172091581	1627982	0	+	0.33	(0.29,0.33]	chr3	170535	442	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	364	2	4.21166	4.2542100000000005	4.29676	0.0020582	1.93111e-4	0.0285046	0.00441241
chr11	70796742	70796842	5062249	0	-	0.53	(0.523,0.58]	chr11	492701	789	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	3.03457	4.254195	5.47382	0.0244797	0.0231444	0.109883	0.106683
chr12	50642747	50642847	5230837	0	+	0.48	(0.45,0.485]	chr12	507719	15	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5:ENST00000546719.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	64	2	3.34686	4.254175	5.16149	0.0427653	0.0124121	0.13762	0.0765738
chr5	95905331	95905429	2731303	0	-	0.397959	(0.39,0.419]	chr5	268236	39	INTRON	INTRON	ELL2	ENSG00000118985.16	ENST00000237853.9:ENST00000513343.1	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	3.09555	4.254045	5.41254	0.0347088	0.0231436	0.12648	0.109883
chr8	143487146	143487246	4096464	0	-	0.61	(0.58,1]	chr8	389272	18	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6:ENST00000528401.1	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	2.79178	4.25403	5.71628	0.0565563	0.00104668	0.154343	0.0146403
chr6	99428140	99428238	2954625	0	+	0.408163	(0.39,0.419]	chr6	290934	16	INTRON	INTRON	ENSG00000228506	ENSG00000228506.3	ENST00000418945.3:ENST00000687719.1	lncRNA	lncRNA	lncRNA	lncRNA	2	89	2	2.83742	4.25367	5.66992	0.0237738	0.0165451	0.105296	0.0916874
chr2	32609303	32609399	750381	0	+	0.354167	(0.33,0.36]	chr2	87576	13	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000471232.5:ENST00000465130.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	72	2	3.86561	4.2534600000000005	4.64131	0.0867669	0.00387524	0.182221	0.0362399
chr5	10431514	10431613	2383228	0	+	0.454545	(0.45,0.485]	chr5	238451	11	INTRON	INTRON	MARCHF6	ENSG00000145495.16	ENST00000274140.10:ENST00000449913.6:ENST00000511802.5:ENST00000503788.5:ENST00000510792.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	80	2	3.12123	4.25338	5.38553	0.0428769	0.00490471	0.137868	0.0422077
chr3	31601556	31601656	1434690	0	+	0.48	(0.45,0.485]	chr3	153080	7	INTRON	INTRON	STT3B	ENSG00000163527.10	ENST00000453168.5:ENST00000295770.4:ENST00000423527.5:ENST00000462235.5:ENST00000436236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	68	2	2.69444	4.2532700000000006	5.8121	0.0471378	0.0158765	0.156915	0.0859576
chr2	48347450	48347550	793181	0	+	0.54	(0.523,0.58]	chr2	90414	3	INTRON	INTRON	FOXN2	ENSG00000170802.17	ENST00000413569.5:ENST00000340553.8	protein_coding	protein_coding	protein_coding	protein_coding	1	87	2	3.53814	4.2526399999999995	4.96714	0.020829	0.0108948	0.0990379	0.0706366
chr3	62191068	62191168	1492917	0	+	0.59	(0.58,1]	chr3	160129	2	SS3_PROX	SS3_PROX:INTRON	PTPRG	ENSG00000144724.20	ENST00000474889.6:ENST00000295874.14	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.95573	4.2524999999999995	4.54927	0.0643046	0.00191878	0.161669	0.0223755
chr18	58046553	58046649	7071465	0	+	0.40625	(0.39,0.419]	chr18	721084	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5:ENST00000588516.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	153	2	1.68781	4.252120000000001	6.81643	0.0680386	0.0035848	0.193274	0.0384108
chr16	89913231	89913330	6526308	0	+	0.565657	(0.523,0.58]	chr16	647715	1	UTR3	UTR3:EXON_MRNA:INTRON	TCF25:ENSG00000267048:MC1R	ENSG00000141002.20:ENSG00000267048.1:ENSG00000258839.4	ENST00000640279.1:ENST00000570217.1:ENST00000539976.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay	1	65	2	3.65844	4.252065	4.84569	0.0610722	0.00554418	0.158506	0.0456911
chr3	185331448	185331548	1647456	0	+	0.32	(0.29,0.33]	chr3	173220	18	INTRON	INTRON	MAP3K13	ENSG00000073803.14	ENST00000446828.5:ENST00000447637.1:ENST00000424227.5:ENST00000428617.1:ENST00000443863.5:ENST00000433092.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	79	2	3.25815	4.25165	5.24515	0.0316508	0.00631714	0.121016	0.0501889
chr18	13589341	13589440	7026486	0	+	0.525253	(0.523,0.58]	chr18	717646	35	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000677744.1:ENST00000593236.1:ENST00000678400.1:ENST00000586207.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	67	2	2.68276	4.251575	5.82039	0.0464998	0.0139724	0.156036	0.0805959
chr22	28962977	28963077	7706071	0	+	0.5	(0.485,0.523]	chr22	806321	451	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7:ENST00000402174.5	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	2.66276	4.25145	5.84014	0.0803133	0.00139792	0.177452	0.0179863
chr14	104875555	104875655	5925967	0	+	0.65	(0.58,1]	chr14	579942	66	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.44157	4.251135	5.0607	0.029633	0.00760198	0.116079	0.0561937
chr11	68330275	68330375	4882260	0	+	0.46	(0.45,0.485]	chr11	470542	171	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	69	2	2.62955	4.25099	5.87243	0.0530416	0.0143887	0.167062	0.0821732
chr21	34789573	34789671	7654835	0	-	0.397959	(0.39,0.419]	chr21	801005	19	UTR3	UTR3:EXON_MRNA	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	3.04938	4.2508099999999995	5.45224	0.032783	0.0253994	0.122593	0.115502
chr3	30613465	30613564	1433160	0	+	0.474747	(0.45,0.485]	chr3	152992	61	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4	protein_coding	protein_coding	protein_coding	protein_coding	16	1082	2	4.0791	4.250735000000001	4.42237	8.68889e-4	6.72379e-5	0.0175759	0.00203649
chr4	1322603	1322700	1995262	0	+	0.443299	(0.419,0.45]	chr4	203257	1	SS5_PROX	SS5_PROX:INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	90	2	2.67985	4.250605	5.82136	0.0238876	0.0210659	0.111747	0.0996078
chr1	1032811	1032911	1043	0	+	0.71	(0.58,1]	chr1	166	100	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	2.63525	4.2500800000000005	5.86491	0.0459151	0.00707578	0.154743	0.0558168
chr9	134368177	134368277	4261105	0	+	0.66	(0.58,1]	chr9	406311	412	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	64	2	2.63525	4.2500800000000005	5.86491	0.0459151	0.00707578	0.154743	0.0558168
chr6	37823214	37823314	2908876	0	+	0.33	(0.29,0.33]	chr6	285643	28	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	3.37208	4.24989	5.1277	0.0382902	0.0113763	0.131324	0.0721226
chr6	43783068	43783166	2921050	0	+	0.510204	(0.485,0.523]	chr6	287445	11	EXON_MRNA	EXON_MRNA:INTRON	VEGFA	ENSG00000112715.26	ENST00000672860.3:ENST00000372067.8:ENST00000425836.8:ENST00000372064.9:ENST00000482630.7:ENST00000372055.9:ENST00000413642.8:ENST00000324450.11:ENST00000417285.7:ENST00000372077.8:ENST00000519767.5:ENST00000520948.5:ENST00000523950.5:ENST00000523873.5:ENST00000518824.5:ENST00000457104.6:ENST00000518689.5:ENST00000523125.5:ENST00000230480.10:ENST00000480614.1:ENST00000520265.1:ENST00000497139.5:ENST00000493786.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	102	2	2.34984	4.24989	6.14994	0.0271926	0.00788098	0.119337	0.059464500000000003
chr7	129267826	129267926	3475877	0	+	0.36	(0.33,0.36]	chr7	335957	420	INTRON	INTRON	AHCYL2	ENSG00000158467.17	ENST00000325006.8:ENST00000446544.6	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	3.49318	4.2498000000000005	5.00642	0.0542065	0.00940277	0.151733	0.0648045
chr6	158627323	158627420	3064580	0	+	0.474227	(0.45,0.485]	chr6	297758	12	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.38668	4.24949	5.1123	0.0458344	0.0113463	0.142336	0.0719708
chr22	31180970	31181070	7711667	0	+	0.27	[0,0.29]	chr22	806944	203	INTRON	INTRON	RNF185	ENSG00000138942.17	ENST00000326132.11:ENST00000494514.5:ENST00000471384.5:ENST00000518626.5:ENST00000266252.8:ENST00000468921.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	71	2	2.6736	4.24923	5.82486	0.0694089	0.00117475	0.167028	0.0158316
chr1	89883035	89883135	181321	0	+	0.56	(0.523,0.58]	chr1	19585	360	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	2	88	2	3.28117	4.24922	5.21727	0.0361597	0.00481434	0.127853	0.041723
chr16	89292099	89292199	6659726	0	-	0.62	(0.58,1]	chr16	666647	3	SS3_PROX	SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	197	2	3.99446	4.248995	4.50353	0.0063152	8.55127e-5	0.0524685	0.00243663
chr14	95319610	95319710	6048845	0	-	0.81	(0.58,1]	chr14	593435	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CLMN	ENSG00000165959.12	ENST00000298912.9:ENST00000553733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	59	2	3.60807	4.24876	4.88945	0.0388928	0.00495688	0.131324	0.0425347
chr17	43546414	43546514	6739029	0	+	0.63	(0.58,1]	chr17	678633	12	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	3	193	2	4.18524	4.248655	4.31207	0.00425781	1.61578e-4	0.0422596	0.00387829
chr11	70762568	70762668	5061907	0	-	0.61	(0.58,1]	chr11	492701	447	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	81	2	2.43115	4.24857	6.06599	0.0309513	0.00477081	0.127822	0.0450109
chr2	10164147	10164247	717942	0	+	0.4	(0.39,0.419]	chr2	84002	80	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	68	2	2.7933500000000002	4.24828	5.70321	0.0415789	0.0226065	0.148959	0.102982
chr6	3351561	3351661	3087005	0	-	0.6	(0.58,1]	chr6	299774	272	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000496753.1:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	114	2	1.96218	4.24824	6.5343	0.0832369	8.82891e-5	0.180677	0.00248664
chr22	24042703	24042803	7694763	0	+	0.53	(0.523,0.58]	chr22	805395	4	SS3_PROX	SS3_PROX:INTRON	CABIN1	ENSG00000099991.18	ENST00000454754.5:ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000445422.5:ENST00000398319.6	protein_coding	protein_coding	protein_coding	protein_coding	4	273	2	4.20938	4.247870000000001	4.28636	0.00629905	1.39814e-4	0.0523832	0.00349735
chr4	77032544	77032641	2062083	0	+	0.412371	(0.39,0.419]	chr4	210965	5	INTRON	INTRON	SEPTIN11	ENSG00000138758.12	ENST00000264893.11:ENST00000505788.5:ENST00000512575.5:ENST00000510515.5:ENST00000506731.5:ENST00000502401.1:ENST00000513373.1:ENST00000513697.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	80	2	2.80031	4.247745	5.69518	0.0728013	0.00302238	0.169397	0.0305643
chr1	17672387	17672487	54935	0	+	0.63	(0.58,1]	chr1	5603	74	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	59	2	2.97713	4.24763	5.51813	0.0226795	0.013519	0.108193	0.0792526
chr1	2231112	2231210	4521	0	+	0.683673	(0.58,1]	chr1	1044	10	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	4	106	2	2.35	4.247135	6.14427	0.017212	0.00407804	0.0923809	0.0413652
chr22	24101737	24101837	7695379	0	+	0.45	(0.419,0.45]	chr22	805519	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CABIN1:ENSG00000232545	ENSG00000099991.18:ENSG00000232545.1	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1:ENST00000444093.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	2	101	2	3.45261	4.24652	5.04043	0.0625897	0.00409282	0.160305	0.0374453
chr9	129497373	129497473	4250749	0	+	0.69	(0.58,1]	chr9	404721	3	SS5_PROX	SS5_PROX:INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	113	2	2.12324	4.24617	6.3691	0.0642584	1.49225e-4	0.161669	0.00367368
chr14	68901579	68901679	5999357	0	-	0.55	(0.523,0.58]	chr14	588711	4	EXON_MRNA	EXON_MRNA:INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6:ENST00000683261.1:ENST00000684096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	62	2	3.27377	4.24552	5.21727	0.0361597	0.0137592	0.127853	0.0814923
chr4	1945362	1945461	1996746	0	+	0.545455	(0.523,0.58]	chr4	203544	31	UTR3	UTR3:EXON_MRNA:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000503128.5:ENST00000677559.1:ENST00000678714.1:ENST00000511904.1:ENST00000513726.5:ENST00000482415.6:ENST00000514329.5:ENST00000502425.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	78	2	3.1364	4.24546	5.35452	0.0400336	0.00453096	0.134064	0.0400651
chr7	221149	221249	3305866	0	+	0.69	(0.58,1]	chr7	320161	118	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.48503	4.24544	5.00585	0.0323732	0.006811	0.121593	0.0524379
chr17	344916	345016	6821738	0	-	0.56	(0.523,0.58]	chr17	689629	36	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000577079.5:ENST00000573780.5:ENST00000575130.5	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.18279	4.245369999999999	5.30795	0.0315825	0.0168396	0.120781	0.0919482
chr16	87859509	87859608	6657069	0	-	0.515152	(0.485,0.523]	chr16	666007	73	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	2	84	2	2.93924	4.24489	5.55054	0.0215787	0.0113973	0.100612	0.0722395
chr6	144347200	144347300	3020482	0	+	0.5	(0.485,0.523]	chr6	295148	25	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1:ENST00000628146.2:ENST00000421035.2	protein_coding	protein_coding	protein_coding	protein_coding	2	84	2	2.93924	4.24489	5.55054	0.0215787	0.0113973	0.100612	0.0722395
chr3	32864419	32864519	1439336	0	+	0.51	(0.485,0.523]	chr3	153401	451	INTRON	INTRON	TRIM71	ENSG00000206557.6	ENST00000383763.6	protein_coding	protein_coding	protein_coding	protein_coding	2	84	2	2.66833	4.2445699999999995	5.82081	0.0211923	0.0138807	0.104042	0.0804838
chr2	53973910	53974010	794938	0	+	0.46	(0.45,0.485]	chr2	90702	1	SS5_PROX	SS5_PROX:INTRON	ACYP2	ENSG00000170634.13	ENST00000458030.3:ENST00000606082.5:ENST00000422521.2:ENST00000607452.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	77	2	2.76944	4.24436	5.71928	0.0716626	0.00219685	0.168159	0.0245167
chr13	97241031	97241131	5630991	0	+	0.46	(0.45,0.485]	chr13	553173	181	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	103	2	2.39645	4.243875	6.0913	0.0255018	0.00998516	0.115943	0.0673647
chr7	5295234	5295334	3312059	0	+	0.61	(0.58,1]	chr7	321118	3	SS5_PROX	SS5_PROX:INTRON	SLC29A4	ENSG00000164638.11	ENST00000396872.8:ENST00000297195.8:ENST00000406453.3	protein_coding	protein_coding	protein_coding	protein_coding	2	146	2	4.15237	4.243195	4.33402	0.00456039	6.31529e-4	0.0438198	0.0102754
chr3	12965597	12965696	1688785	0	-	0.565657	(0.523,0.58]	chr3	176520	46	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	3.13506	4.24315	5.35124	0.0295772	0.0186841	0.116079	0.0976296
chr16	87740223	87740323	6656483	0	-	0.66	(0.58,1]	chr16	665892	92	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	69	2	3.02751	4.2431149999999995	5.45872	0.0385189	0.00211999	0.131324	0.0239744
chr2	61537859	61537958	1158375	0	-	0.646465	(0.58,1]	chr2	126972	4	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000401558.7:ENST00000428210.5:ENST00000406957.5:ENST00000443240.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	617	2	3.09927	4.2429	5.38653	6.86903e-4	9.80477e-5	0.0109059	0.00553563
chr1	43563907	43564007	107078	0	+	0.65	(0.58,1]	chr1	13192	96	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	321	2	4.00678	4.2428799999999995	4.47898	8.3564e-4	2.03188e-4	0.0171847	0.00458039
chr6	63658370	63658470	2934489	0	+	0.39	(0.36,0.39]	chr6	288800	112	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	66	2	3.38495	4.242675	5.1004	0.0526991	0.0125396	0.14912	0.0765784
chr12	132952754	132952853	5542059	0	-	0.444444	(0.419,0.45]	chr12	547064	41	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	92	2	3.08037	4.24257	5.40477	0.0385125	0.00993718	0.131324	0.0666391
chr1	246311691	246311791	703902	0	-	0.39	(0.36,0.39]	chr1	82426	58	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	80	2	2.90564	4.24256	5.57948	0.0625454	0.00393844	0.160305	0.0367306
chr2	233169104	233169204	1058317	0	+	0.64	(0.58,1]	chr2	115125	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493078.1:ENST00000472517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	61	2	2.78186	4.241885	5.70191	0.0342923	0.00964351	0.13449	0.0659937
chr22	48700946	48701046	7751277	0	+	0.59	(0.58,1]	chr22	812283	72	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	61	2	2.78186	4.241885	5.70191	0.0342923	0.00964351	0.13449	0.0659937
chr14	103684582	103684679	5924679	0	+	0.639175	(0.58,1]	chr14	579654	2	SS3_PROX	SS3_PROX:INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000380038.7:ENST00000334553.11:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8:ENST00000537046.6:ENST00000553325.5:ENST00000555856.1:ENST00000535194.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	385	2	4.17065	4.24176	4.31287	0.00102768	7.28741e-5	0.0192522	0.00216451
chr2	216099419	216099519	1023234	0	+	0.6	(0.58,1]	chr2	111531	1	SS3_PROX	SS3_PROX:INTRON	TMEM169	ENSG00000163449.11	ENST00000454545.5:ENST00000433112.5:ENST00000295658.8:ENST00000437356.7:ENST00000406027.2:ENST00000455479.5	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	2.47204	4.24169	6.01134	0.0623526	0.00531709	0.181127	0.047841
chr20	32378344	32378444	7455889	0	+	0.46	(0.45,0.485]	chr20	776143	59	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	425	2	2.94848	4.2416350000000005	5.53479	0.00283951	5.31755e-4	0.0293377	0.0134466
chr11	115483293	115483393	5130923	0	-	0.31	(0.29,0.33]	chr11	498122	371	INTRON	INTRON	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000541434.5:ENST00000543249.1:ENST00000540951.1:ENST00000536781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	84	2	2.68671	4.241615	5.79652	0.0206777	0.0131751	0.102713	0.0785398
chr22	20125209	20125307	7686895	0	+	0.602041	(0.58,1]	chr22	804214	12	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000331821.7:ENST00000411892.5:ENST00000423859.5:ENST00000418705.2:ENST00000448394.2:ENST00000486575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	79	2	2.52834	4.24144	5.95454	0.0249502	0.0059453	0.114418	0.0506158
chr2	3298894	3298994	1081096	0	-	0.56	(0.523,0.58]	chr2	117633	162	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	220	2	4.12942	4.2413799999999995	4.35334	0.0048052599999999996	4.55982e-4	0.0452736	0.0082115
chr10	102648613	102648712	4576510	0	+	0.585859	(0.58,1]	chr10	437280	24	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	77	2	2.74604	4.24103	5.73602	0.015009	0.00904546	0.0852854	0.0637469
chr1	91013151	91013251	525640	0	-	0.49	(0.485,0.523]	chr1	61801	304	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	3.21778	4.240765	5.26375	0.0335928	0.0157761	0.124319	0.0884237
chr9	96604110	96604210	4345480	0	-	0.49	(0.485,0.523]	chr9	415195	370	INTRON	INTRON	CDC14B	ENSG00000081377.17	ENST00000474602.5:ENST00000412285.6:ENST00000375241.6:ENST00000375240.7:ENST00000463569.5:ENST00000415608.1:ENST00000496750.5:ENST00000463547.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	166	2	4.06697	4.240745	4.4145200000000004	0.00816193	7.5951e-4	0.0605492	0.011724
chr4	113696059	113696159	2313779	0	-	0.37	(0.36,0.39]	chr4	232470	339	INTRON	INTRON	CAMK2D	ENSG00000145349.18	ENST00000683023.1:ENST00000296402.9:ENST00000511664.6:ENST00000394524.7:ENST00000342666.9:ENST00000514328.5:ENST00000515496.5:ENST00000394522.7:ENST00000505990.5:ENST00000379773.6:ENST00000508738.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	69	2	3.65573	4.240724999999999	4.82572	0.0751666	0.0067964	0.172839	0.0524192
chr2	235505040	235505140	1062646	0	+	0.5	(0.485,0.523]	chr2	115651	98	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	64	2	2.85817	4.240585	5.623	0.0334631	0.0192139	0.133139	0.095424900000000007
chr20	32481079	32481178	7543679	0	-	0.50505	(0.485,0.523]	chr20	787372	60	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	64	2	2.85817	4.240585	5.623	0.0334631	0.0192139	0.133139	0.095424900000000007
chr9	129496832	129496914	4250743	0	+	0.695122	(0.58,1]	chr9	404718	4	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	106	2	2.58575	4.24058	5.89541	0.00941356	0.0066708	0.0648709	0.0540577
chr22	21448218	21448316	7689844	0	+	0.591837	(0.58,1]	chr22	804733	16	UTR3	UTR3:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.84993	4.240555	5.63118	0.0297842	0.0109983	0.126591	0.0708586
chr2	149618732	149618832	920133	0	+	0.48	(0.45,0.485]	chr2	102788	243	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	1	71	2	3.90828	4.24039	4.5725	0.0926859	0.00323103	0.188571	0.0319521
chr7	75933811	75933911	3396793	0	+	0.29	[0,0.29]	chr7	328054	105	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000449920.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	98	2	2.31743	4.24008	6.16273	0.0277535	0.00434262	0.12074	0.0427656
chr14	104871855	104871955	5925930	0	+	0.65	(0.58,1]	chr14	579942	29	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	3	229	2	2.61273	4.24006	5.86739	0.0388117	3.74448e-6	0.131324	2.5891e-4
chr2	3330627	3330727	1081418	0	-	0.5	(0.485,0.523]	chr2	117645	102	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	62	2	3.17158	4.239975	5.30837	0.0314138	0.017456	0.12069	0.0928044
chr1	7705289	7705389	17668	0	+	0.76	(0.58,1]	chr1	1925	272	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	2.71042	4.239879999999999	5.76934	0.0396128	0.00849371	0.143388	0.0617717
chr8	117870783	117870883	4047329	0	-	0.35	(0.33,0.36]	chr8	386018	332	INTRON	INTRON	EXT1	ENSG00000182197.13	ENST00000378204.7:ENST00000684189.1:ENST00000437196.1:ENST00000436216.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	65	2	3.42056	4.239879999999999	5.0592	0.0504445	0.0110831	0.148216	0.071519
chr9	133958802	133958902	4429993	0	-	0.54	(0.523,0.58]	chr9	423331	192	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	83	2	2.78812	4.239845	5.69157	0.0172851	0.0160129	0.0897247	0.0894586
chr13	26254372	26254461	5551189	0	+	0.786517	(0.58,1]	chr13	547911	4	UTR5	UTR5:EXON_MRNA	CDK8	ENSG00000132964.12	ENST00000536792.5:ENST00000381527.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	96	2	2.76261	4.239445	5.71628	0.0297581	0.00104668	0.116461	0.0146403
chr12	132792972	132793070	5540391	0	-	0.693878	(0.58,1]	chr12	546816	13	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	93	2	2.35391	4.2391749999999995	6.12444	0.0600041	3.17437e-4	0.158506	0.00632787
chr6	142315037	142315137	3012008	0	+	0.36	(0.33,0.36]	chr6	294688	50	INTRON	INTRON	ADGRG6	ENSG00000112414.15	ENST00000230173.10:ENST00000367608.6:ENST00000415128.6:ENST00000296932.13:ENST00000367609.8:ENST00000541199.5:ENST00000545477.1:ENST00000435011.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	78	2	2.56404	4.23904	5.91404	0.0954498	0.00156051	0.189038	0.0194067
chr3	81546179	81546279	1846519	0	-	0.41	(0.39,0.419]	chr3	188700	87	INTRON	INTRON	GBE1	ENSG00000114480.13	ENST00000429644.7:ENST00000489715.1:ENST00000484687.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	262	2	3.26675	4.239005000000001	5.21126	0.01622	0.00127803	0.0902823	0.0217971
chr17	57464010	57464110	6761852	0	+	0.44	(0.419,0.45]	chr17	682137	189	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	247	2	4.20301	4.23897	4.27493	0.00778307	5.76436e-4	0.0590114	0.00963379
chr9	14838553	14838652	4280100	0	-	0.424242	(0.419,0.45]	chr9	408973	132	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	302	2	3.66051	4.238655	4.8168	0.00300582	0.00135855	0.0349182	0.0176228
chr3	13025594	13025694	1689392	0	-	0.54	(0.523,0.58]	chr3	176542	31	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	2.98385	4.238535	5.49322	0.0505794	0.00324246	0.148456	0.0319521
chr11	27430847	27430947	5019491	0	-	0.58	(0.523,0.58]	chr11	485493	176	INTRON	INTRON	LGR4	ENSG00000205213.14	ENST00000379214.9:ENST00000389858.4:ENST00000480977.2	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	2.92656	4.23834	5.55012	0.0289226	0.0217068	0.124	0.100615
chr8	30446442	30446542	3788787	0	+	0.36	(0.33,0.36]	chr8	364900	1	SS3_PROX	SS3_PROX:INTRON	RBPMS	ENSG00000157110.16	ENST00000320203.8:ENST00000339877.8:ENST00000287771.9:ENST00000397323.9:ENST00000517860.5:ENST00000520161.5:ENST00000523115.5:ENST00000519647.5:ENST00000521816.1:ENST00000520191.5:ENST00000523717.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	97	2	3.74235	4.238015	4.73368	0.0216127	0.0159829	0.105648	0.0863908
chr1	3472999	3473077	5842	0	+	0.653846	(0.58,1]	chr1	1238	4	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5:ENST00000464620.1:ENST00000418137.1:ENST00000485984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	70	2	3.16566	4.23801	5.31036	0.0304114	0.00312721	0.11845	0.0311915
chr2	138568140	138568238	904561	0	+	0.44898	(0.419,0.45]	chr2	101982	28	INTRON	INTRON	SPOPL	ENSG00000144228.9	ENST00000280098.9:ENST00000420679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	66	2	3.1968	4.23774	5.27868	0.0457732	0.0193853	0.142336	0.0994526
chr21	44869103	44869202	7678533	0	-	0.373737	(0.36,0.39]	chr21	802773	31	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	393	2	3.52669	4.2376249999999995	4.94856	0.00914333	8.78818e-4	0.063297	0.0176886
chr13	27650365	27650463	5554551	0	+	0.44898	(0.419,0.45]	chr13	548175	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	POLR1D	ENSG00000186184.20	ENST00000637180.1:ENST00000621089.2:ENST00000693488.1:ENST00000399697.7:ENST00000489647.4:ENST00000692944.1:ENST00000636817.1:ENST00000630983.1:ENST00000465887.2:ENST00000637071.1:ENST00000636952.2:ENST00000472179.2:ENST00000636411.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	66	2	3.11129	4.23762	5.36395	0.0407485	0.023073	0.135868	0.109758
chr2	3298794	3298894	1081095	0	-	0.55	(0.523,0.58]	chr2	117633	161	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	75	2	2.77655	4.237445	5.69834	0.0685533	0.00194036	0.165066	0.0225083
chr15	68208043	68208139	6311213	0	-	0.645833	(0.58,1]	chr15	622150	12	UTR3	UTR3:EXON_MRNA	CLN6	ENSG00000128973.13	ENST00000249806.11:ENST00000638076.1:ENST00000636964.1:ENST00000565471.6:ENST00000637329.1:ENST00000567060.5:ENST00000566347.5:ENST00000538696.5:ENST00000635747.1:ENST00000637494.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	59	2	3.64686	4.237195	4.82753	0.0427798	0.00447535	0.13762	0.0398484
chr15	78450653	78450752	6158243	0	+	0.585859	(0.58,1]	chr15	606043	104	INTRON	INTRON	IREB2	ENSG00000136381.13	ENST00000560840.5:ENST00000559215.5:ENST00000258886.13:ENST00000558525.5:ENST00000560440.5:ENST00000558570.5:ENST00000560454.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	58	2	3.03676	4.23714	5.43752	0.0198789	0.0156166	0.100864	0.0849828
chr22	21447136	21447234	7689833	0	+	0.632653	(0.58,1]	chr22	804733	5	UTR3	UTR3:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.03676	4.23714	5.43752	0.0198789	0.0156166	0.100864	0.0849828
chr6	158018195	158018295	3059674	0	+	0.59	(0.58,1]	chr6	297372	4	SS5_PROX	SS5_PROX:INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.03676	4.23714	5.43752	0.0198789	0.0156166	0.100864	0.0849828
chr9	134364784	134364884	4261071	0	+	0.66	(0.58,1]	chr9	406311	378	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	58	2	3.03676	4.23714	5.43752	0.0198789	0.0156166	0.100864	0.0849828
chr6	45296109	45296209	3142893	0	-	0.28	[0,0.29]	chr6	306706	446	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5:ENST00000459689.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	60	2	3.3667	4.236815	5.10693	0.0292928	0.0105013	0.116079	0.0689526
chr13	97369250	97369349	5632284	0	+	0.363636	(0.36,0.39]	chr13	553226	23	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000449284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	65	2	3.14223	4.236645	5.33106	0.0383628	0.0209989	0.131324	0.103249
chr3	30637346	30637446	1433400	0	+	0.5	(0.485,0.523]	chr3	153006	41	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4:ENST00000673250.1:ENST00000672866.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	302	2	3.74618	4.236535	4.72689	0.00232182	4.85557e-4	0.030354	0.00857996
chr8	70245474	70245574	3993668	0	-	0.48	(0.45,0.485]	chr8	382239	2	INTRON	INTRON	NCOA2	ENSG00000140396.13	ENST00000452400.7:ENST00000518287.6:ENST00000520416.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	171	2	3.65973	4.236405	4.81308	0.0180534	2.71322e-4	0.0921579	0.00564793
chr13	50633697	50633797	5598964	0	+	0.48	(0.45,0.485]	chr13	551695	22	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1	lncRNA	lncRNA	lncRNA	lncRNA	1	68	2	2.62955	4.236065	5.84258	0.0530416	0.0151085	0.167062	0.0841543
chr6	158018494	158018594	3059677	0	+	0.45	(0.419,0.45]	chr6	297373	3	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	3.23773	4.2359	5.23407	0.0486006	0.0178095	0.145074	0.0943752
chr9	134366580	134366680	4261089	0	+	0.69	(0.58,1]	chr9	406311	396	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	59	2	2.91493	4.23587	5.55681	0.0259506	0.0126042	0.116361	0.0761905
chr1	246898536	246898636	706769	0	-	0.37	(0.36,0.39]	chr1	82677	2	SS3_PROX	SS3_PROX:INTRON	AHCTF1	ENSG00000153207.16	ENST00000648844.2:ENST00000326225.3:ENST00000366508.5:ENST00000470300.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	79	2	2.70325	4.2358	5.76835	0.0824711	0.00252253	0.179396	0.0270357
chr6	81881046	81881145	3188762	0	-	0.363636	(0.36,0.39]	chr6	309343	208	INTRON	INTRON	LINC02542	ENSG00000226453.3	ENST00000667666.1:ENST00000663543.1:ENST00000668303.1:ENST00000660637.1:ENST00000668266.1:ENST00000666226.1:ENST00000418567.2:ENST00000665153.1:ENST00000660534.2:ENST00000684960.1	lncRNA	lncRNA	lncRNA	lncRNA	1	65	2	3.22776	4.235465	5.24317	0.0433841	0.0175762	0.138813	0.0933129
chr16	85388836	85388936	6516959	0	+	0.53	(0.523,0.58]	chr16	646391	295	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	174	2	4.09254	4.23529	4.37804	0.00458519	0.00180302	0.044038	0.0215053
chr20	44406232	44406326	7482979	0	+	0.56383	(0.523,0.58]	chr20	779651	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	83	2	2.92019	4.235155	5.55012	0.0217068	0.0117692	0.100615	0.0743709
chr6	158039539	158039638	3059893	0	+	0.525253	(0.523,0.58]	chr6	297390	55	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	62	2	3.4003	4.234935	5.06957	0.0448011	0.0103016	0.140478	0.0678983
chr2	158590043	158590142	936294	0	+	0.282828	[0,0.29]	chr2	103407	12	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000421462.5:ENST00000462335.1:ENST00000481115.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	72	2	3.19982	4.23492	5.27002	0.029619	0.0048238	0.116079	0.0417661
chr10	89640302	89640402	4729192	0	-	0.33	(0.29,0.33]	chr10	451264	133	INTRON	INTRON	PANK1	ENSG00000152782.18	ENST00000307534.10:ENST00000342512.3:ENST00000322191.10:ENST00000488482.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	3.15459	4.234885	5.31518	0.0288318	0.0184236	0.116067	0.0964756
chr11	61758836	61758936	4862557	0	+	0.48	(0.45,0.485]	chr11	466004	30	INTRON	INTRON	MYRF	ENSG00000124920.14	ENST00000278836.10:ENST00000537766.1:ENST00000265460.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	172	2	4.13769	4.234815	4.33194	0.00783394	0.0010558	0.0592199	0.0147548
chr7	128006338	128006437	3471795	0	+	0.525253	(0.523,0.58]	chr7	335434	84	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	75	2	2.66054	4.234635	5.80873	0.0806884	0.00145893	0.177452	0.0184991
chr15	40022127	40022225	6079268	0	+	0.428571	(0.419,0.45]	chr15	597304	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EIF2AK4	ENSG00000128829.12	ENST00000263791.10:ENST00000560855.5:ENST00000558629.5:ENST00000558557.1:ENST00000558743.1:ENST00000559032.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	70	2	2.64776	4.23456	5.82136	0.0551054	0.0210659	0.169163	0.0996078
chr15	28218188	28218288	6207153	0	-	0.58	(0.523,0.58]	chr15	611112	3	SS5_PROX	SS5_PROX:INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	2.84901	4.234385	5.61976	0.0617545	0.00236826	0.158869	0.0259199
chr22	21675814	21675914	7690782	0	+	0.55	(0.523,0.58]	chr22	804829	3	INTRON	INTRON	PPIL2	ENSG00000100023.20	ENST00000679795.1:ENST00000679540.1:ENST00000679580.1:ENST00000681286.1:ENST00000680061.1:ENST00000681338.1:ENST00000681956.1:ENST00000679827.1:ENST00000679534.1:ENST00000679479.1:ENST00000680393.1:ENST00000680463.1:ENST00000680426.1:ENST00000335025.12:ENST00000498109.2:ENST00000496819.2:ENST00000398831.8:ENST00000681394.1:ENST00000679477.1:ENST00000626352.2:ENST00000417788.5:ENST00000458567.5:ENST00000681791.1:ENST00000679692.1:ENST00000680962.1:ENST00000679857.1:ENST00000679586.1:ENST00000680094.1:ENST00000484439.5:ENST00000680434.1:ENST00000680109.1:ENST00000406385.1:ENST00000680022.1:ENST00000681137.1:ENST00000680860.1:ENST00000680183.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	62	2	3.03457	4.23434	5.43411	0.026041	0.0231444	0.109883	0.109673
chr20	37506042	37506141	7559828	0	-	0.59596	(0.58,1]	chr20	789576	22	INTRON	INTRON	BLCAP	ENSG00000166619.15	ENST00000411780.1:ENST00000467603.1	protein_coding	processed_transcript	protein_coding	processed_transcript	3	95	2	2.22558	4.234014999999999	6.24245	0.0311606	0.00334087	0.127822	0.0368376
chr2	96619862	96619962	1221614	0	-	0.4	(0.39,0.419]	chr2	132047	1	SS3_PROX	SS3_PROX:INTRON	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000447759.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1:ENST00000597150.5:ENST00000444759.5:ENST00000452268.5:ENST00000425656.5:ENST00000448075.1:ENST00000451819.5:ENST00000416138.1:ENST00000418735.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	66	2	3.41977	4.23396	5.04815	0.0572698	0.0116434	0.154343	0.0736274
chr17	14397272	14397372	6683509	0	+	0.49	(0.485,0.523]	chr17	670767	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000230647	ENSG00000230647.2	ENST00000436469.1:ENST00000655690.1	lncRNA	lncRNA	lncRNA	lncRNA	1	75	2	2.85123	4.23371	5.61619	0.0614408	0.00247695	0.158506	0.0266492
chr2	239343985	239344085	1392150	0	-	0.41	(0.39,0.419]	chr2	148752	195	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	65	2	3.09555	4.233635	5.37172	0.0367885	0.0231436	0.129052	0.109883
chr16	2097627	2097727	6535023	0	-	0.66	(0.58,1]	chr16	649511	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PKD1	ENSG00000008710.20	ENST00000262304.9:ENST00000423118.5:ENST00000487932.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	57	2	3.30273	4.23363	5.16453	0.0249802	0.0107069	0.10758	0.0700635
chr7	217956	218056	3305834	0	+	0.68	(0.58,1]	chr7	320161	86	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.30273	4.23363	5.16453	0.0249802	0.0107069	0.10758	0.0700635
chr22	32969755	32969855	7794361	0	-	0.4	(0.39,0.419]	chr22	817464	223	INTRON	INTRON	SYN3	ENSG00000185666.15	ENST00000358763.7	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	3.90781	4.23362	4.55943	0.104562	0.00373204	0.19835	0.0351453
chr6	167843996	167844095	3073511	0	+	0.313131	(0.29,0.33]	chr6	298792	157	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000400825.8:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400824.8:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	124	2	2.26774	4.23357	6.1994	0.0590766	5.69534e-4	0.156561	0.00958234
chr12	26773358	26773458	5401003	0	-	0.41	(0.39,0.419]	chr12	528735	472	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000545235.1:ENST00000242737.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	80	2	2.92909	4.233535	5.53798	0.0609293	0.0043589	0.158506	0.0391245
chr10	28560931	28561031	4469694	0	+	0.45	(0.419,0.45]	chr10	427649	225	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	246	2	4.16817	4.2332	4.29823	0.00747853	6.34064e-4	0.0576451	0.0103057
chr2	175607770	175607870	959424	0	+	0.52	(0.485,0.523]	chr2	105443	128	INTRON	INTRON	ENSG00000289349	ENSG00000289349.1	ENST00000692740.1:ENST00000685522.1	lncRNA	lncRNA	lncRNA	lncRNA	1	63	2	2.91537	4.232955	5.55054	0.0298565	0.0215787	0.126732	0.100612
chr7	5419262	5419362	3536263	0	-	0.66	(0.58,1]	chr7	341498	120	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	3.07041	4.2329349999999994	5.39546	0.0168207	0.00661304	0.0884836	0.0512951
chr10	103702207	103702307	4757122	0	-	0.43	(0.419,0.45]	chr10	454791	87	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	66	2	3.27753	4.232785	5.18804	0.051668	0.0163857	0.148503	0.0910838
chr8	9770562	9770662	3754881	0	+	0.45	(0.419,0.45]	chr8	360880	3	SS5_PROX	SS5_PROX:INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	2.8723	4.232725	5.59315	0.0367198	0.029494	0.139793	0.116079
chr18	13444752	13444850	7025023	0	+	0.387755	(0.36,0.39]	chr18	717583	5	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000610087.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	65	2	3.05132	4.23261	5.4139	0.0340874	0.0252548	0.125059	0.114966
chr1	167422165	167422264	265561	0	+	0.444444	(0.419,0.45]	chr1	31300	62	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	POU2F1	ENSG00000143190.23	ENST00000367866.7:ENST00000271411.8:ENST00000429375.6:ENST00000367865.5:ENST00000541643.7:ENST00000367862.9:ENST00000443275.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	66	2	3.02039	4.23243	5.44447	0.0364384	0.0276403	0.128173	0.120359
chr1	43566498	43566597	107104	0	+	0.606061	(0.58,1]	chr1	13192	122	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	68	2	2.74846	4.23237	5.71628	0.0605281	0.00104668	0.158506	0.0146403
chr12	110347511	110347610	5327595	0	+	0.373737	(0.36,0.39]	chr12	519465	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ATP2A2	ENSG00000174437.18	ENST00000308664.10:ENST00000539276.7:ENST00000377685.9:ENST00000313432.5:ENST00000553144.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	88	2	2.57496	4.23229	5.88962	0.0288176	0.0166261	0.123783	0.0884836
chr17	17722027	17722127	6689255	0	+	0.59	(0.58,1]	chr17	671338	371	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	2.91446	4.23212	5.54978	0.0464528	0.00165911	0.143232	0.0202545
chr3	48424717	48424780	1766679	0	-	0.539683	(0.523,0.58]	chr3	182276	1	SS3_PROX	SS3_PROX:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	76	2	3.01567	4.232060000000001	5.44845	0.0482042	0.00361636	0.144601	0.0342681
chr17	78797825	78797924	6979427	0	-	0.59596	(0.58,1]	chr17	712642	23	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	USP36	ENSG00000055483.20	ENST00000588130.5:ENST00000587010.5:ENST00000591052.5:ENST00000589225.5:ENST00000587379.1:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	57	2	3.35051	4.23203	5.11355	0.0271806	0.00953058	0.112113	0.0650078
chr18	58151958	58152058	7072532	0	+	0.36	(0.33,0.36]	chr18	721129	20	INTRON	INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5:ENST00000588516.5:ENST00000456986.5:ENST00000675502.1:ENST00000675554.1:ENST00000675137.1:ENST00000587547.1:ENST00000675227.1:ENST00000357895.9:ENST00000435432.6:ENST00000586263.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	64	2	3.30428	4.231795	5.15931	0.043896	0.014334	0.139792	0.0833845
chr20	58688153	58688252	7498559	0	+	0.606061	(0.58,1]	chr20	781977	88	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1:ENST00000413559.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	1	57	2	3.20215	4.231765	5.26138	0.021217	0.0136092	0.0996078	0.0811697
chr5	139651965	139652065	2549680	0	+	0.63	(0.58,1]	chr5	253168	4	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.20215	4.231765	5.26138	0.021217	0.0136092	0.0996078	0.0811697
chr17	82007638	82007738	6815373	0	+	0.68	(0.58,1]	chr17	688641	34	EXON_MRNA	EXON_MRNA:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5:ENST00000578236.5:ENST00000581608.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	146	2	3.56577	4.231605	4.89744	0.0146864	1.06039e-4	0.0826843	0.00286177
chr8	26589472	26589571	3779848	0	+	0.484848	(0.45,0.485]	chr8	364064	51	INTRON	INTRON	DPYSL2	ENSG00000092964.18	ENST00000521913.7:ENST00000311151.9:ENST00000523027.1	protein_coding	protein_coding	protein_coding	protein_coding	2	145	2	3.51256	4.23156	4.95056	0.0127826	0.0110886	0.0773423	0.071276
chr20	61970987	61971087	7582824	0	-	0.52	(0.485,0.523]	chr20	792262	168	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000474089.5	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	2.70511	4.231475	5.75784	0.0195331	0.0154142	0.1	0.0849828
chr12	26826694	26826793	5401537	0	-	0.393939	(0.39,0.419]	chr12	528741	361	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000545235.1:ENST00000242737.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	121	2	2.19485	4.23134	6.26783	0.0324537	0.00920367	0.130572	0.0644228
chr1	248854633	248854715	709840	0	-	0.414634	(0.39,0.419]	chr1	83013	2	INTRON	INTRON	ZNF692	ENSG00000171163.16	ENST00000463519.5:ENST00000306601.9:ENST00000366471.7:ENST00000533927.5:ENST00000476503.5:ENST00000477070.6:ENST00000412341.6:ENST00000482023.5:ENST00000451251.5:ENST00000470787.6:ENST00000474351.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	65	2	3.26675	4.23127	5.19579	0.0469937	0.01622	0.143232	0.0902823
chr11	16982779	16982879	5011396	0	-	0.48	(0.45,0.485]	chr11	484333	694	INTRON	INTRON	PLEKHA7	ENSG00000166689.17	ENST00000531066.6:ENST00000355661.7:ENST00000532079.1:ENST00000529213.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	170	2	4.05096	4.23113	4.4113	0.00915267	8.48909e-4	0.064285	0.0126615
chr12	81094094	81094194	5283175	0	+	0.41	(0.39,0.419]	chr12	514448	153	INTRON	INTRON	ACSS3	ENSG00000111058.8	ENST00000549175.1:ENST00000261206.7:ENST00000548058.6	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.04938	4.23096	5.41254	0.0347088	0.0253994	0.12648	0.115502
chr12	23949463	23949563	5388521	0	-	0.39	(0.36,0.39]	chr12	528199	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000537393.5:ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2:ENST00000536729.2:ENST00000446891.7:ENST00000536850.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	72	2	3.82995	4.230825	4.6317	0.0950937	0.00449477	0.189021	0.0399512
chrX	44906585	44906685	7872007	0	+	0.25	[0,0.29]	chrX	825082	322	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	83	2	3.20651	4.230625	5.25474	0.02298	0.00542442	0.102982	0.0453487
chr13	75480969	75481069	5727994	0	-	0.73	(0.58,1]	chr13	561723	3	SS5_PROX	SS5_PROX:INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	6	291	2	3.39246	4.23049	5.06852	6.70113e-4	6.09599e-4	0.0144841	0.0107748
chr2	235521825	235521925	1062814	0	+	0.36	(0.33,0.36]	chr2	115651	266	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	173	2	4.05386	4.23027	4.40668	0.00930731	9.53042e-4	0.0649153	0.013685
chr13	113053134	113053229	5656167	0	+	0.589474	(0.58,1]	chr13	555185	5	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	69	2	3.09824	4.229885	5.36153	0.0341637	0.00273899	0.125129	0.028553
chr14	34981427	34981526	5958196	0	-	0.484848	(0.45,0.485]	chr14	584010	89	INTRON	INTRON	SRP54-AS1	ENSG00000258704.7	ENST00000692503.1:ENST00000690110.1:ENST00000690001.1:ENST00000688072.1:ENST00000693002.1:ENST00000556355.5:ENST00000555015.5:ENST00000693259.1:ENST00000636540.1:ENST00000556705.6:ENST00000691849.1:ENST00000686430.1:ENST00000686298.1:ENST00000688866.1:ENST00000689842.1:ENST00000554945.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	1	63	2	3.03233	4.2291	5.42587	0.0290571	0.0244076	0.116079	0.113311
chr5	139654062	139654162	2549701	0	+	0.6	(0.58,1]	chr5	253168	25	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	2.95313	4.22905	5.50497	0.0435972	0.00187297	0.139245	0.0219434
chr4	128172882	128172982	2131035	0	+	0.38	(0.36,0.39]	chr4	216440	102	INTRON	INTRON	LARP1B	ENSG00000138709.19	ENST00000326639.11:ENST00000508819.5:ENST00000649983.1:ENST00000507259.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	65	2	3.30849	4.229035	5.14958	0.0493212	0.0148029	0.146207	0.0847481
chr8	433035	433135	3743661	0	+	0.39	(0.36,0.39]	chr8	359996	1	SS5_PROX	SS5_PROX:INTRON	FBXO25	ENSG00000147364.17	ENST00000518240.5:ENST00000352684.2:ENST00000382824.5:ENST00000350302.8:ENST00000276326.9:ENST00000524125.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	65	2	3.30849	4.229035	5.14958	0.0493212	0.0148029	0.146207	0.0847481
chr5	150517000	150517100	2565181	0	+	0.33	(0.29,0.33]	chr5	254953	84	INTRON	INTRON	NDST1	ENSG00000070614.15	ENST00000522491.1:ENST00000519157.1:ENST00000524161.1:ENST00000523767.5:ENST00000518299.1:ENST00000518346.1:ENST00000261797.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	105	2	2.7307	4.2289200000000005	5.72714	0.0381199	0.00198096	0.131324	0.0229039
chr17	4839833	4839933	6671951	0	+	0.38	(0.36,0.39]	chr17	668609	58	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	139	2	1.73408	4.2288	6.72352	0.0691749	0.00411221	0.193841	0.0414433
chr20	58690037	58690136	7498578	0	+	0.343434	(0.33,0.36]	chr20	781977	107	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1:ENST00000413559.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	2	87	2	2.99408	4.22873	5.46338	0.0281891	0.0111121	0.114124	0.0716954
chr1	205714111	205714210	648460	0	-	0.383838	(0.36,0.39]	chr1	76867	14	UTR3	UTR3:EXON_MRNA	NUCKS1	ENSG00000069275.13	ENST00000367142.5	protein_coding	protein_coding	protein_coding	protein_coding	5	134	2	2.12275	4.2286	6.33445	0.0316999	0.00804615	0.128599	0.0600099
chr17	27469914	27470013	6702485	0	+	0.393939	(0.39,0.419]	chr17	672842	127	INTRON	INTRON	KSR1	ENSG00000141068.15	ENST00000644974.2:ENST00000579309.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	181	2	4.14546	4.2284749999999995	4.31149	0.00890442	0.00134114	0.063673	0.0174212
chr21	33530463	33530560	7652595	0	-	0.443299	(0.419,0.45]	chr21	800670	3	SS5_PROX	SS5_PROX:INTRON	GART	ENSG00000159131.17	ENST00000381839.7:ENST00000381831.7:ENST00000424203.5:ENST00000381815.9:ENST00000361093.9:ENST00000366093.6:ENST00000466882.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	66	2	3.31626	4.2283800000000005	5.1405	0.0550015	0.0150971	0.153337	0.0857427
chr17	7108657	7108756	6847719	0	-	0.686869	(0.58,1]	chr17	693419	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	671	2	3.65939	4.227715	4.79604	0.00200624	4.07987e-6	0.0281746	2.74079e-4
chr16	81540382	81540482	6508697	0	+	0.52	(0.485,0.523]	chr16	645911	445	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	2.60361	4.227455	5.8513	0.0541523	0.0131886	0.167824	0.0785398
chr7	77709136	77709236	3400434	0	+	0.46	(0.45,0.485]	chr7	328497	114	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	3	233	2	3.80217	4.226865	4.65156	0.00301937	0.00132239	0.0350226	0.0173138
chr7	75934708	75934808	3396802	0	+	0.6	(0.58,1]	chr7	328054	114	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000449920.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	78	2	2.52834	4.22681	5.92528	0.0249502	0.0062948	0.114418	0.0523832
chr19	949301	949401	7185339	0	+	0.69	(0.58,1]	chr19	730741	162	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	102	2	3.04215	4.226545	5.41094	0.0177015	0.00240622	0.0910644	0.0261006
chrX	119005720	119005820	7943851	0	+	0.41	(0.39,0.419]	chrX	831163	2	SS3_PROX	SS3_PROX:INTRON	LONRF3	ENSG00000175556.17	ENST00000304778.11:ENST00000371628.8:ENST00000481285.5:ENST00000439603.5:ENST00000422289.3:ENST00000472173.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	79	2	2.58263	4.22645	5.87027	0.0970705	0.00198333	0.190588	0.0229039
chr1	205448398	205448498	647849	0	-	0.66	(0.58,1]	chr1	76780	1	PRIMIRNA	PRIMIRNA	MIR135B	ENSG00000199059.3	ENST00000362189.3	miRNA	primary_miRNA	miRNA	primary_miRNA	1	60	2	3.75733	4.226215	4.6951	0.0521567	0.0033279	0.148503	0.0325742
chr7	129944783	129944882	3707659	0	-	0.353535	(0.33,0.36]	chr7	356243	72	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	268	2	3.33956	4.2262	5.11284	0.00483562	0.00127976	0.0418176	0.0218101
chr16	87738128	87738227	6656462	0	-	0.484848	(0.45,0.485]	chr16	665892	71	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000567513.1:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	76	2	2.73276	4.22602	5.71928	0.0754102	0.00219685	0.173278	0.0245167
chr16	87361062	87361161	6654785	0	-	0.525253	(0.523,0.58]	chr16	665713	3	INTRON	INTRON	FBXO31	ENSG00000103264.18	ENST00000311635.12:ENST00000565593.1:ENST00000618298.6:ENST00000636077.1:ENST00000561664.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	103	2	2.93948	4.225975	5.51247	0.0230387	0.00661401	0.102982	0.0512951
chr20	10429414	10429512	7524974	0	-	0.459184	(0.45,0.485]	chr20	785439	2	INTRON	INTRON	MKKS	ENSG00000125863.20:ENSG00000285508.1	ENST00000347364.7:ENST00000651692.1:ENST00000652676.1:ENST00000399054.6:ENST00000609375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	2.87326	4.2259	5.57854	0.033576	0.0230065	0.133139	0.102982
chr3	171732943	171733043	1957777	0	-	0.43	(0.419,0.45]	chr3	199044	1	SS5_PROX	SS5_PROX:INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9:ENST00000498278.5:ENST00000475273.6:ENST00000440204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	107	2	2.59851	4.224855	5.8512	0.0201381	0.0183201	0.0973365	0.0959909
chr22	23658855	23658951	7771345	0	-	0.375	(0.36,0.39]	chr22	815033	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	GUSBP11:ENSG00000272578	ENSG00000228315.12:ENSG00000272578.5	ENST00000422506.5:ENST00000445682.2:ENST00000452737.5:ENST00000451837.5:ENST00000455485.5:ENST00000423913.5:ENST00000421064.5:ENST00000434893.1:ENST00000651432.1:ENST00000417194.5	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript	3	243	2	3.25585	4.224775	5.1937	0.0192785	1.16114e-4	0.0954446	0.00307197
chr11	75305853	75305952	5079164	0	-	0.414141	(0.39,0.419]	chr11	494228	23	INTRON	INTRON	ARRB1	ENSG00000137486.17	ENST00000420843.7:ENST00000360025.7:ENST00000532525.1:ENST00000524400.5:ENST00000533609.5:ENST00000533255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	66	2	2.84832	4.224635	5.60095	0.0375279	0.0263614	0.139823	0.110638
chr17	314740	314839	6821423	0	-	0.555556	(0.523,0.58]	chr17	689582	82	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	168	2	4.21238	4.224515	4.23665	0.0059863	0.0013008	0.0508545	0.0171237
chr17	7114116	7114140	6847775	0	-	0.375	(0.36,0.39]	chr17	693426	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	87	2	2.67993	4.22443	5.76893	0.0231725	0.0200694	0.109982	0.0971995
chr3	149922325	149922425	1596411	0	+	0.32	(0.29,0.33]	chr3	168769	7	INTRON	INTRON	RNF13	ENSG00000082996.20	ENST00000344229.7:ENST00000491086.5:ENST00000392894.8:ENST00000467977.5:ENST00000474348.5:ENST00000467996.1:ENST00000361785.10:ENST00000482083.7:ENST00000468289.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	62	2	3.37208	4.22442	5.07676	0.0412683	0.0113763	0.136301	0.0721226
chr20	63730222	63730322	7509341	0	+	0.61	(0.58,1]	chr20	783515	207	INTRON	INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	81	2	3.38782	4.22426	5.0607	0.029633	0.00277379	0.116079	0.0287134
chr11	12705033	12705133	4801950	0	+	0.46	(0.45,0.485]	chr11	460555	291	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000527376.3:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	2.80521	4.224005	5.6428	0.0681544	0.00265386	0.164505	0.027979
chr3	149180449	149180545	1939232	0	-	0.458333	(0.45,0.485]	chr3	197325	4	INTRON	INTRON	CP	ENSG00000047457.14	ENST00000481169.5:ENST00000264613.11:ENST00000494544.1:ENST00000490639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	215	2	3.53579	4.22369	4.91159	0.00804225	0.00183094	0.0582806	0.0266464
chr5	81133952	81134052	2469996	0	+	0.4	(0.39,0.419]	chr5	246654	64	INTRON	INTRON	RASGRF2	ENSG00000113319.13	ENST00000265080.9:ENST00000503795.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	69	2	3.68433	4.22345	4.76257	0.0822354	0.00637588	0.179396	0.0501889
chr9	14843060	14843160	4280148	0	-	0.44	(0.419,0.45]	chr9	408984	4	SS3_PROX	SS3_PROX:INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	90	2	2.42833	4.2233350000000005	6.01834	0.0395807	0.015582500000000001	0.143388	0.0849828
chr2	63990504	63990604	1166743	0	-	0.53	(0.523,0.58]	chr2	127344	61	INTRON	INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	3.30043	4.223225	5.14602	0.0308549	0.00734367	0.119556	0.0550721
chr3	48088272	48088372	1765948	0	-	0.59	(0.58,1]	chr3	182012	1	SS5_PROX	SS5_PROX:INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	2	92	2	2.44544	4.223115	6.00079	0.0516128	4.59827e-4	0.148503	0.00821903
chr6	158026468	158026568	3059757	0	+	0.64	(0.58,1]	chr6	297373	83	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.09402	4.22308	5.35214	0.0181452	0.0174733	0.0928044	0.0921579
chr14	24305386	24305483	5759754	0	+	0.515464	(0.485,0.523]	chr14	565581	4	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NOP9	ENSG00000196943.14	ENST00000267425.8:ENST00000650565.1:ENST00000557362.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	62	2	3.4289	4.223045	5.01719	0.0480495	0.00977282	0.144601	0.0664239
chr3	50053047	50053145	1468226	0	+	0.408163	(0.39,0.419]	chr3	157177	44	INTRON	INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5:ENST00000464013.5:ENST00000483350.1:ENST00000446471.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	89	2	2.41984	4.22301	6.02618	0.0393507	0.0136549	0.143358	0.0798074
chr10	96140267	96140366	4560190	0	+	0.40404	(0.39,0.419]	chr10	435112	46	INTRON	INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	87	2	2.77569	4.222805	5.66992	0.0237738	0.0189262	0.105296	0.0985211
chr16	85432917	85433017	6517400	0	+	0.52	(0.485,0.523]	chr16	646391	736	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	3.68616	4.222775	4.75939	0.0172254	0.0161133	0.0923809	0.0870535
chrX	20265557	20265617	7995417	0	-	0.483333	(0.45,0.485]	chrX	836374	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	RPS6KA3	ENSG00000177189.14	ENST00000379565.9:ENST00000643085.1:ENST00000645270.1:ENST00000643402.1:ENST00000644368.1:ENST00000647265.1:ENST00000645268.1:ENST00000646610.1:ENST00000643337.1:ENST00000642835.1:ENST00000644893.1:ENST00000438357.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	87	2	2.37986	4.222775	6.06569	0.0401325	0.0104281	0.144727	0.0687558
chr9	108900575	108900675	4362797	0	-	0.39	(0.36,0.39]	chr9	416548	2	SS3_PROX	SS3_PROX:INTRON	ELP1	ENSG00000070061.16	ENST00000675765.1:ENST00000374647.10:ENST00000675078.1:ENST00000674948.1:ENST00000676121.1:ENST00000676429.1:ENST00000674704.1:ENST00000674938.1:ENST00000675602.1:ENST00000675215.1:ENST00000676044.1:ENST00000675979.1:ENST00000675325.1:ENST00000495759.6:ENST00000675893.1:ENST00000675943.1:ENST00000675535.1:ENST00000674890.1:ENST00000675233.1:ENST00000676086.1:ENST00000674836.1:ENST00000675406.1:ENST00000675748.1:ENST00000675400.1:ENST00000676237.1:ENST00000675825.1:ENST00000676424.1:ENST00000675647.1:ENST00000675877.1:ENST00000676416.1:ENST00000675052.1:ENST00000674535.1:ENST00000537196.1:ENST00000675566.1:ENST00000675507.1:ENST00000675727.1:ENST00000675711.1:ENST00000675458.1:ENST00000675335.1:ENST00000675321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	67	2	3.56005	4.222525	4.885	0.0697729	0.00847528	0.167185	0.0607325
chr11	61758936	61759035	4862558	0	+	0.555556	(0.523,0.58]	chr11	466004	31	INTRON	INTRON	MYRF	ENSG00000124920.14	ENST00000278836.10:ENST00000537766.1:ENST00000265460.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	164	2	4.07988	4.2224450000000004	4.36501	0.00800435	0.00085027500000000005	0.0597631	0.0126678
chr17	78823012	78823112	6979701	0	-	0.57	(0.523,0.58]	chr17	712726	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	USP36	ENSG00000055483.20	ENST00000589225.5:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10:ENST00000588086.6:ENST00000586066.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	82	2	2.82229	4.222435	5.62258	0.0193313	0.014802	0.0954446	0.0847481
chr7	47358007	47358106	3587371	0	-	0.525253	(0.523,0.58]	chr7	346030	113	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	2.56415	4.222435	5.88072	0.0263234	0.0126258	0.117901	0.0761905
chr7	77553172	77553271	3399410	0	+	0.343434	(0.33,0.36]	chr7	328377	70	INTRON	INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000460731.5:ENST00000523952.5:ENST00000433369.6:ENST00000415482.6:ENST00000435495.6:ENST00000418110.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	65	2	3.49318	4.222405	4.95163	0.0583482	0.00940277	0.155373	0.0648045
chr2	69639777	69639877	1177195	0	-	0.51	(0.485,0.523]	chr2	128070	824	INTRON	INTRON	AAK1	ENSG00000115977.21	ENST00000409085.9:ENST00000606389.7:ENST00000409068.5:ENST00000406297.7:ENST00000495836.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	62	2	2.97038	4.222315	5.47425	0.0267011	0.0243396	0.118343	0.106588
chr5	148393216	148393316	2562861	0	+	0.47	(0.45,0.485]	chr5	254487	33	INTRON	INTRON	FBXO38	ENSG00000145868.17	ENST00000296701.10:ENST00000503613.5:ENST00000340253.10:ENST00000394370.7:ENST00000508326.5:ENST00000509411.5:ENST00000511080.5:ENST00000504971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	229	2	3.4531	4.222315	4.99153	0.0123308	1.6063e-4	0.075733	0.00387435
chr20	382166	382249	7414322	0	+	0.481928	(0.45,0.485]	chr20	772275	3	SS3_PROX	SS3_PROX:INTRON	TRIB3	ENSG00000101255.12	ENST00000615226.4:ENST00000217233.9:ENST00000449710.5:ENST00000422053.3	protein_coding	protein_coding	protein_coding	protein_coding	3	243	2	3.69829	4.2219999999999995	4.74571	0.0169139	8.41298e-5	0.088829	0.00240785
chr17	7112436	7112534	6847758	0	-	0.459184	(0.45,0.485]	chr17	693423	32	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	653	2	3.83032	4.221575	4.61283	0.00332244	2.84618e-5	0.0368376	0.00108268
chr11	66663757	66663856	4877265	0	+	0.424242	(0.419,0.45]	chr11	469623	115	INTRON	INTRON	RBM4	ENSG00000173933.21	ENST00000396053.9	protein_coding	protein_coding	protein_coding	protein_coding	1	84	2	3.13761	4.221545	5.30548	0.0472779	0.00792071	0.143504	0.057762
chr11	70765466	70765566	5061936	0	-	0.42	(0.419,0.45]	chr11	492701	476	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	91	2	2.3476	4.2213899999999995	6.09518	0.0461739	0.0138177	0.155334	0.0803169
chr2	54620419	54620515	799925	0	+	0.40625	(0.39,0.419]	chr2	90830	19	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7:ENST00000333896.5	protein_coding	protein_coding	protein_coding	protein_coding	2	87	2	2.80688	4.221365	5.63585	0.025023	0.0176876	0.10758	0.093839
chr3	58009156	58009256	1483045	0	+	0.69	(0.58,1]	chr3	159571	3	SS5_PROX	SS5_PROX:INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	69	2	3.13234	4.22135	5.31036	0.0322188	0.00312721	0.121593	0.0311915
chr7	155713437	155713536	3519220	0	+	0.666667	(0.58,1]	chr7	339826	16	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3:ENST00000486747.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	69	2	3.13234	4.22135	5.31036	0.0322188	0.00312721	0.121593	0.0311915
chr17	72526941	72527035	6963576	0	-	0.425532	(0.419,0.45]	chr17	710376	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1:ENST00000650510.1	lncRNA	lncRNA	lncRNA	lncRNA	3	112	2	2.92164	4.221185	5.52073	0.0327198	0.00876484	0.122543	0.0614673
chr1	213989518	213989617	339370	0	+	0.575758	(0.523,0.58]	chr1	38085	4	INTRON	INTRON	PROX1	ENSG00000117707.16	ENST00000471129.1:ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.65844	4.22114	4.78384	0.0663135	0.00554418	0.162385	0.0456911
chr9	123884617	123884717	4401440	0	-	0.42	(0.419,0.45]	chr9	419733	52	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	2.75532	4.22104	5.68676	0.0800906	0.00338051	0.177372	0.0328791
chr20	45026428	45026528	7485765	0	+	0.45	(0.419,0.45]	chr20	780008	9	INTRON	INTRON	STK4	ENSG00000101109.12	ENST00000499879.6:ENST00000372806.8:ENST00000372801.5	protein_coding	protein_coding	protein_coding	protein_coding	2	89	2	2.50478	4.220985	5.93719	0.0340831	0.0176643	0.134158	0.0909046
chr3	143976478	143976577	1593565	0	+	0.373737	(0.36,0.39]	chr3	168469	24	INTRON	INTRON	DIPK2A	ENSG00000181744.9	ENST00000315691.8:ENST00000493396.1:ENST00000491798.1:ENST00000483808.1:ENST00000495414.5:ENST00000492452.2:ENST00000441925.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	70	2	2.5517	4.22066	5.88962	0.0637554	0.0166261	0.184651	0.0884836
chr20	34074166	34074266	7460416	0	+	0.57	(0.523,0.58]	chr20	776616	3	SS5_PROX	SS5_PROX:INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000246194.8:ENST00000333552.9:ENST00000442805.1:ENST00000493399.1:ENST00000488227.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	2.92656	4.219515	5.51247	0.0289226	0.0230387	0.124	0.102982
chr17	56897827	56897926	6931179	0	-	0.565657	(0.523,0.58]	chr17	706281	15	INTRON	INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000570473.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	61	2	3.31719	4.218845	5.1205	0.0416463	0.0124719	0.136301	0.0765738
chr16	85432818	85432917	6517399	0	+	0.565657	(0.523,0.58]	chr16	646391	735	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	112	2	2.94384	4.2185299999999994	5.49322	0.0279362	0.00324246	0.113476	0.0319521
chr7	47354223	47354323	3587333	0	-	0.57	(0.523,0.58]	chr7	346030	75	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.08569	4.218465	5.35124	0.0295772	0.020773	0.116079	0.102713
chr7	34665524	34665624	3572280	0	-	0.46	(0.45,0.485]	chr7	344517	218	INTRON	INTRON	NPSR1-AS1	ENSG00000197085.11	ENST00000419766.5:ENST00000539747.5:ENST00000439852.5:ENST00000358772.8:ENST00000431669.5	lncRNA	lncRNA	lncRNA	lncRNA	2	85	2	2.50637	4.218355	5.93034	0.0310626	0.0130794	0.127822	0.0782396
chr11	68351215	68351314	4882470	0	+	0.69697	(0.58,1]	chr11	470548	26	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	71	2	3.29173	4.21835	5.14497	0.0243429	0.00474658	0.106588	0.0413976
chr2	240520533	240520633	1394640	0	-	0.72	(0.58,1]	chr2	149018	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000405523.7	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	3.48788	4.21835	4.94882	0.0354433	0.00208277	0.127188	0.0237357
chr11	70740785	70740885	5061689	0	-	0.57	(0.523,0.58]	chr11	492701	229	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	88	2	3.60243	4.218335	4.83424	0.0186731	0.0144272	0.0934313	0.0833845
chr12	6767534	6767629	5165691	0	+	0.663158	(0.58,1]	chr12	502315	4	INTRON	INTRON	PTMS	ENSG00000159335.18	ENST00000540667.5:ENST00000309083.8:ENST00000389462.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	72	2	3.35086	4.2181	5.08534	0.0218816	0.00549379	0.101015	0.0454065
chr13	113111150	113111250	5656739	0	+	0.71	(0.58,1]	chr13	555357	3	SS5_PROX	SS5_PROX:INTRON	F7	ENSG00000057593.14	ENST00000541084.5:ENST00000346342.8:ENST00000375581.3:ENST00000444337.1:ENST00000479674.1:ENST00000473085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	58	2	3.60807	4.2178	4.82753	0.0427798	0.00495688	0.13762	0.0425347
chr19	1413655	1413754	7187483	0	+	0.676768	(0.58,1]	chr19	731286	32	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	139	2	1.69627	4.2177999999999995	6.73933	0.0502624	0.00116939	0.162213	0.0206836
chr16	20904013	20904112	6417999	0	+	0.494949	(0.485,0.523]	chr16	634694	9	INTRON	INTRON	LYRM1	ENSG00000102897.10	ENST00000568663.5:ENST00000412082.6:ENST00000439021.5:ENST00000567165.5:ENST00000569023.5:ENST00000568820.5:ENST00000562740.5:ENST00000219168.8:ENST00000567954.6:ENST00000396052.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	61	2	3.21778	4.217735	5.21769	0.0359739	0.0157761	0.127853	0.0884237
chr2	239289771	239289870	1391606	0	-	0.494949	(0.485,0.523]	chr2	148740	382	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	61	2	3.21778	4.217735	5.21769	0.0359739	0.0157761	0.127853	0.0884237
chr6	128135262	128135362	3253306	0	-	0.5	(0.485,0.523]	chr6	315160	449	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000531050.5:ENST00000524534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	61	2	3.21778	4.217735	5.21769	0.0359739	0.0157761	0.127853	0.0884237
chr9	135835766	135835866	4431104	0	-	0.5	(0.485,0.523]	chr9	423507	78	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.21778	4.217735	5.21769	0.0359739	0.0157761	0.127853	0.0884237
chr11	2692996	2693096	4972241	0	-	0.51	(0.485,0.523]	chr11	481197	848	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	3	99	2	2.41295	4.217375	6.0218	0.0236576	0.00985907	0.111208	0.0670775
chr6	144332117	144332217	3020330	0	+	0.48	(0.45,0.485]	chr6	295143	7	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1:ENST00000628146.2	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	3.00299	4.217355	5.43172	0.0512051	0.00440365	0.148503	0.0393688
chr16	78992511	78992611	6504344	0	+	0.38	(0.36,0.39]	chr16	645717	2122	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	66	2	3.49254	4.21724	4.94194	0.064883	0.00987589	0.162218	0.0664239
chr22	32818198	32818297	7717791	0	+	0.474747	(0.45,0.485]	chr22	807776	157	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	2.5616	4.217015	5.87243	0.0598406	0.0143887	0.177269	0.0821732
chr19	36772624	36772724	7371318	0	-	0.61	(0.58,1]	chr19	764163	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF850	ENSG00000267041.6	ENST00000589390.5:ENST00000614887.4:ENST00000591344.2	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.48503	4.216925	4.94882	0.0354433	0.006811	0.127188	0.0524379
chr20	58689938	58690037	7498577	0	+	0.434343	(0.419,0.45]	chr20	781977	106	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1:ENST00000413559.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	1	65	2	3.15468	4.21668	5.27868	0.0457732	0.0211324	0.142336	0.103778
chr1	43566697	43566797	107106	0	+	0.61	(0.58,1]	chr1	13192	124	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	58	2	2.91493	4.2165300000000006	5.51813	0.0259506	0.013519	0.116361	0.0792526
chr13	113049723	113049822	5656132	0	+	0.585859	(0.58,1]	chr13	555180	25	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	58	2	2.91493	4.2165300000000006	5.51813	0.0259506	0.013519	0.116361	0.0792526
chr2	207720907	207721007	1004220	0	+	0.5	(0.485,0.523]	chr2	110218	62	INTRON	INTRON	CCNYL1	ENSG00000163249.13	ENST00000392209.7:ENST00000295414.8:ENST00000339882.9:ENST00000650811.1:ENST00000452312.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	61	2	3.26255	4.216335	5.17012	0.038581	0.0142848	0.131324	0.0833845
chr14	91220958	91221055	5899566	0	+	0.536082	(0.523,0.58]	chr14	576435	3	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	82	2	2.92019	4.21633	5.51247	0.0230387	0.0117692	0.102982	0.0743709
chr12	6339394	6339493	5362101	0	-	0.484848	(0.45,0.485]	chr12	525042	48	INTRON	INTRON	TNFRSF1A	ENSG00000067182.8	ENST00000534885.5:ENST00000162749.7:ENST00000543995.5:ENST00000540022.5:ENST00000539372.5:ENST00000366159.8:ENST00000543048.5:ENST00000440083.6:ENST00000536194.1:ENST00000535958.1:ENST00000538363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	63	2	2.92826	4.21624	5.50422	0.0301249	0.0257993	0.126768	0.109555
chr10	44968564	44968664	4483214	0	+	0.56	(0.523,0.58]	chr10	428600	83	INTRON	INTRON	RASSF4	ENSG00000107551.21	ENST00000489171.5:ENST00000340258.10:ENST00000427758.5:ENST00000483709.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	63	2	2.80981	4.216195	5.62258	0.0364868	0.0193313	0.139793	0.0954446
chr3	195151092	195151191	1981524	0	-	0.50505	(0.485,0.523]	chr3	201666	42	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000437101.5:ENST00000473200.1:ENST00000429994.5:ENST00000418940.5:ENST00000491138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	75	2	2.49197	4.21614	5.94031	0.10114	0.00107389	0.196131	0.0148869
chr17	315934	316033	6821435	0	-	0.606061	(0.58,1]	chr17	689582	94	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	207	2	3.51185	4.21604	4.92023	0.00194298	8.54687e-4	0.022534	0.0173903
chr2	101784320	101784420	861499	0	+	0.45	(0.419,0.45]	chr2	97528	854	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	2	89	2	2.46706	4.215905	5.96475	0.0367089	0.0169309	0.139793	0.088829
chr10	103812648	103812747	4758231	0	-	0.606061	(0.58,1]	chr10	454819	109	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	3	95	2	2.1424	4.21577	6.28914	0.0374477	0.00303562	0.139793	0.0350226
chr21	42849590	42849682	7675468	0	-	0.576087	(0.523,0.58]	chr21	802288	5	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	235	2	2.87061	4.215725	5.56084	0.0315682	2.26731e-5	0.120781	9.21511e-4
chr10	75497993	75498093	4521138	0	+	0.42	(0.419,0.45]	chr10	432249	464	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.1968	4.215435	5.23407	0.0486006	0.0193853	0.145074	0.0994526
chr2	170998323	170998421	1312536	0	-	0.428571	(0.419,0.45]	chr2	140540	1	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	65	2	3.1968	4.215435	5.23407	0.0486006	0.0193853	0.145074	0.0994526
chr1	204083075	204083175	322150	0	+	0.47	(0.45,0.485]	chr1	36272	45	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1:ENST00000528591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	2.81608	4.215195	5.61431	0.0375071	0.0217589	0.139823	0.100615
chr19	15645418	15645518	7215408	0	+	0.45	(0.419,0.45]	chr19	737140	3	SS3_PROX	SS3_PROX:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	71	2	2.52086	4.214975	5.90909	0.0683849	0.0184411	0.193274	0.0927235
chr2	240520109	240520209	1394635	0	-	0.52	(0.485,0.523]	chr2	149014	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000391988.3:ENST00000405523.7	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.92296	4.21465	4.50634	0.0939553	0.00288574	0.188571	0.0297057
chr6	149847813	149847913	3289617	0	-	0.37	(0.36,0.39]	chr6	317960	43	INTRON	INTRON	LRP11	ENSG00000120256.11	ENST00000239367.7:ENST00000367368.3	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.18563	4.2144	5.24317	0.0433841	0.0191961	0.138813	0.0994526
chr20	36857777	36857877	7557079	0	-	0.47	(0.45,0.485]	chr20	789155	180	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	9	550	2	3.63555	4.21434	4.79313	9.59752e-4	3.94216e-4	0.0185615	0.00739413
chr10	131957054	131957154	4616598	0	+	0.5	(0.485,0.523]	chr10	441116	12	UTR3	UTR3:EXON_MRNA	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000470416.5:ENST00000649083.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	64	2	2.7365	4.21425	5.692	0.0423471	0.0171772	0.149195	0.0895975
chr22	24092542	24092641	7695284	0	+	0.575758	(0.523,0.58]	chr22	805504	3	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	2.6197	4.214214999999999	5.80873	0.0853454	0.00145893	0.181766	0.0184991
chr12	105203003	105203102	5489676	0	-	0.50505	(0.485,0.523]	chr12	539945	31	INTRON	INTRON	APPL2	ENSG00000136044.12	ENST00000547439.5:ENST00000258530.8:ENST00000539978.6:ENST00000551662.5:ENST00000547809.5:ENST00000549573.5:ENST00000549974.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	62	2	2.91537	4.214135	5.5129	0.0298565	0.0229047	0.126732	0.102982
chr20	341119	341219	7511854	0	-	0.52	(0.485,0.523]	chr20	783986	160	INTRON	INTRON	NRSN2-AS1	ENSG00000225377.6	ENST00000442637.2:ENST00000662580.1	lncRNA	lncRNA	lncRNA	lncRNA	1	62	2	2.91537	4.214135	5.5129	0.0298565	0.0229047	0.126732	0.102982
chr2	3331026	3331126	1081422	0	-	0.54	(0.523,0.58]	chr2	117645	106	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	61	2	3.03457	4.21392	5.39327	0.0277354	0.0231444	0.112851	0.109883
chr16	72931497	72931597	6626719	0	-	0.4	(0.39,0.419]	chr16	663529	412	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2:ENST00000397992.5:ENST00000268489.10	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	2.69557	4.213755	5.73194	0.0837871	0.00276973	0.181557	0.0286873
chr14	103103648	103103745	5921849	0	+	0.618557	(0.58,1]	chr14	579208	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000559116.1:ENST00000560925.5:ENST00000560102.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	468	2	4.10786	4.213665	4.31947	0.00118637	2.97066e-5	0.0208412	0.00111738
chr10	79220473	79220573	4533566	0	+	0.67	(0.58,1]	chr10	432457	38	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	3	190	2	3.92273	4.21364	4.50455	0.00215269	5.62865e-4	0.02913	0.00949677
chr6	349049	349147	2824325	0	+	0.72449	(0.58,1]	chr6	277235	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	DUSP22	ENSG00000112679.15	ENST00000344450.9:ENST00000605315.5:ENST00000603795.5:ENST00000605035.5:ENST00000419235.7:ENST00000603726.5:ENST00000604971.5:ENST00000604988.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	141	2	3.77454	4.21358	4.65262	0.00981158	2.34232e-4	0.0668871	0.00506154
chr10	79223672	79223772	4533598	0	+	0.52	(0.485,0.523]	chr10	432457	70	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.07448	4.213075	5.35167	0.0294163	0.0214987	0.116079	0.10537
chr2	168093924	168094024	1308307	0	-	0.48	(0.45,0.485]	chr2	140215	183	INTRON	INTRON	STK39	ENSG00000198648.11	ENST00000487143.5:ENST00000355999.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	3.26377	4.21263	5.16149	0.0427653	0.0149252	0.13762	0.0848525
chr20	44358646	44358746	7482494	0	+	0.42	(0.419,0.45]	chr20	779618	24	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.02039	4.21258	5.40477	0.0385125	0.0276403	0.131324	0.120359
chr8	108459496	108459595	3902482	0	+	0.424242	(0.419,0.45]	chr8	372963	32	INTRON	INTRON	EMC2	ENSG00000104412.8	ENST00000220853.8:ENST00000517784.5:ENST00000519642.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	65	2	3.02039	4.21258	5.40477	0.0385125	0.0276403	0.131324	0.120359
chr1	6790255	6790355	8495	0	+	0.57	(0.523,0.58]	chr1	1830	43	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12:ENST00000490738.5:ENST00000476163.5:ENST00000473578.5:ENST00000557126.5:ENST00000467404.6:ENST00000461311.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	165	2	4.16749	4.212574999999999	4.2576599999999996	0.00680947	0.00114788	0.0548177	0.0156784
chr1	8601503	8601603	393565	0	-	0.41	(0.39,0.419]	chr1	45045	108	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	325	2	3.70727	4.21254	4.71781	0.00320804	7.62049e-4	0.0362105	0.0117554
chr3	48683939	48684039	1768460	0	-	0.49	(0.485,0.523]	chr3	182827	5	INTRON	INTRON	NCKIPSD	ENSG00000213672.8	ENST00000294129.7:ENST00000416649.6:ENST00000439518.5:ENST00000454134.1:ENST00000426678.1:ENST00000453349.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	66	2	2.60361	4.21221	5.82081	0.0541523	0.0138807	0.167824	0.0804838
chr18	58125245	58125345	7072262	0	+	0.4	(0.39,0.419]	chr18	721123	247	INTRON	INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5:ENST00000588516.5:ENST00000456986.5:ENST00000675502.1:ENST00000675554.1:ENST00000675137.1:ENST00000587547.1:ENST00000675227.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	87	2	2.5361	4.21218	5.88826	0.0312392	0.0169925	0.127822	0.0889149
chr6	41586834	41586934	2912920	0	+	0.67	(0.58,1]	chr6	285789	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	FOXP4	ENSG00000137166.17	ENST00000307972.10:ENST00000373063.7:ENST00000409208.5:ENST00000373057.7:ENST00000670130.1	protein_coding	protein_coding	protein_coding	protein_coding	5	261	2	3.43699	4.21199	4.98699	7.95833e-4	7.34433e-4	0.0159847	0.0120989
chr11	61273198	61273292	5041308	0	-	0.691489	(0.58,1]	chr11	488759	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10:ENST00000535710.1:ENST00000398808.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	77	2	2.52834	4.211875	5.89541	0.0249502	0.0066708	0.114418	0.0540577
chr9	124258661	124258761	4235501	0	+	0.73	(0.58,1]	chr9	402075	3	SS5_PROX	SS5_PROX:INTRON	NEK6	ENSG00000119408.17	ENST00000373603.5:ENST00000540326.5:ENST00000320246.10:ENST00000373600.7:ENST00000545174.5:ENST00000444973.5:ENST00000454453.5	protein_coding	protein_coding	protein_coding	protein_coding	3	92	2	2.30423	4.21144	6.11865	0.0260615	0.00429384	0.116811	0.042386
chr2	26096461	26096561	731444	0	+	0.34	(0.33,0.36]	chr2	85215	538	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	63	2	3.26334	4.2113249999999995	5.15931	0.043896	0.0156643	0.139792	0.0878971
chr16	73055355	73055454	6627964	0	-	0.414141	(0.39,0.419]	chr16	663553	74	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2:ENST00000397992.5	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.22582	4.210805	5.19579	0.0469937	0.0176855	0.143232	0.093839
chr19	47228331	47228431	7392364	0	-	0.81	(0.58,1]	chr19	768102	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	2.6194	4.21065	5.8019	0.0202577	0.007984	0.102015	0.0596361
chr9	126505648	126505747	4242424	0	+	0.535354	(0.523,0.58]	chr9	402713	25	UTR3	UTR3:EXON_MRNA	MVB12B	ENSG00000196814.15	ENST00000361171.8:ENST00000485886.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	172	2	3.30043	4.21055	5.12067	0.0308549	9.0674200000000007e-05	0.119556	0.00254217
chr1	228144582	228144667	358030	0	+	0.647059	(0.58,1]	chr1	40402	4	UTR5	UTR5:EXON_MRNA:INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5:ENST00000366718.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	115	2	2.5203700000000002	4.21046	5.90055	0.0322644	6.1741e-4	0.121593	0.0101143
chr5	139653263	139653363	2549693	0	+	0.56	(0.523,0.58]	chr5	253168	17	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	2	171	2	4.06733	4.210335000000001	4.35334	0.0048052599999999996	0.00192956	0.0452736	0.0224824
chr12	26644909	26645009	5399693	0	-	0.54	(0.523,0.58]	chr12	528625	125	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	2	85	2	2.34664	4.210319999999999	6.074	0.0413259	0.00906277	0.148318	0.0637469
chr2	215433123	215433223	1368647	0	-	0.48	(0.45,0.485]	chr2	145799	4	SS5_PROX	SS5_PROX:INTRON	FN1	ENSG00000115414.21	ENST00000421182.5:ENST00000323926.10:ENST00000336916.8:ENST00000357867.8:ENST00000359671.5:ENST00000443816.5:ENST00000446046.5:ENST00000354785.11:ENST00000432072.6:ENST00000356005.8:ENST00000426059.1	protein_coding	protein_coding	protein_coding	protein_coding	2	167	2	3.9901	4.2102900000000005	4.43048	0.010198	8.05025e-4	0.0684871	0.0121934
chr12	50642847	50642946	5230838	0	+	0.535354	(0.523,0.58]	chr12	507719	16	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5:ENST00000546719.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	74	2	2.88392	4.210285	5.53665	0.0586821	0.00291382	0.155604	0.0298557
chr11	70659527	70659627	5060870	0	-	0.49	(0.485,0.523]	chr11	492673	3	SS5_PROX	SS5_PROX:INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	84	2	2.42548	4.21011	5.99474	0.0355127	0.0103305	0.137983	0.0684871
chr1	44574104	44574204	113745	0	+	0.24	[0,0.29]	chr1	14024	7	INTRON	INTRON	RNF220	ENSG00000187147.18	ENST00000355387.6:ENST00000361799.7:ENST00000372247.6	protein_coding	protein_coding	protein_coding	protein_coding	2	128	2	3.5697	4.2098949999999995	4.85009	0.0124991	0.00652562	0.0765738	0.0534496
chr17	66393615	66393715	6784341	0	+	0.58	(0.523,0.58]	chr17	684232	294	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	112	2	2.295	4.20989	6.12478	0.0230125	0.00829271	0.109585	0.0610772
chr13	98415915	98416014	5636428	0	+	0.525253	(0.523,0.58]	chr13	553617	35	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000457029.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	2.86937	4.209745	5.55012	0.0324455	0.0217068	0.130548	0.100615
chr21	33236547	33236647	7609134	0	+	0.58	(0.523,0.58]	chr21	794612	56	INTRON	INTRON	IFNAR2	ENSG00000159110.21	ENST00000683941.1:ENST00000382264.7:ENST00000342136.9:ENST00000404220.7:ENST00000420068.1:ENST00000342101.7:ENST00000382238.6:ENST00000413881.5:ENST00000443073.5:ENST00000447980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	77	2	3.16507	4.20955	5.25403	0.0382777	0.00573579	0.131324	0.0467736
chr6	1737081	1737181	3080242	0	-	0.34	(0.33,0.36]	chr6	299476	102	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	76	2	2.60488	4.209395	5.81391	0.090445	0.00200357	0.186505	0.0230381
chr12	53412811	53412909	5236092	0	+	0.428571	(0.419,0.45]	chr12	508911	17	UTR3	UTR3:EXON_MRNA	SP1	ENSG00000185591.10	ENST00000327443.9:ENST00000426431.2	protein_coding	protein_coding	protein_coding	protein_coding	2	182	2	4.06005	4.209315	4.35858	0.011193	0.00126891	0.0717814	0.0168159
chr1	61130599	61130698	146586	0	+	0.535354	(0.523,0.58]	chr1	17144	184	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	75	2	3.01567	4.20896	5.40225	0.0482042	0.00404292	0.144601	0.0371291
chr5	883839	883937	2608215	0	-	0.612245	(0.58,1]	chr5	259478	5	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000466684.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	56	2	3.25332	4.208925	5.16453	0.0249802	0.0120565	0.10758	0.0754623
chr1	44243075	44243174	459603	0	-	0.707071	(0.58,1]	chr1	55307	6	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	75	2	2.89926	4.2086950000000005	5.51813	0.013519	0.0102831	0.0792526	0.0678667
chr2	235521925	235522025	1062815	0	+	0.49	(0.485,0.523]	chr2	115651	267	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	61	2	3.02337	4.20853	5.39369	0.0275819	0.023933	0.112782	0.111785
chr5	177089049	177089149	2597778	0	+	0.51	(0.485,0.523]	chr5	257892	1	SS3_PROX	SS3_PROX:INTRON	FGFR4	ENSG00000160867.15	ENST00000393648.6:ENST00000503708.5:ENST00000502906.5:ENST00000514472.1:ENST00000292408.9:ENST00000507708.1:ENST00000510911.5:ENST00000513166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	61	2	3.02337	4.20853	5.39369	0.0275819	0.023933	0.112782	0.111785
chr6	158039241	158039341	3059890	0	+	0.6	(0.58,1]	chr6	297390	52	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	3.30273	4.20814	5.11355	0.0271806	0.0107069	0.112113	0.0700635
chr2	119766779	119766879	883659	0	+	0.41	(0.39,0.419]	chr2	100098	60	INTRON	INTRON	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000460162.1:ENST00000420482.5:ENST00000460289.5:ENST00000488279.6:ENST00000485247.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	65	2	3.41977	4.207575	4.99538	0.0613573	0.0116434	0.158506	0.0736274
chr17	15508478	15508577	6860524	0	-	0.616162	(0.58,1]	chr17	695085	11	INTRON	INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	57	2	2.97713	4.207325	5.43752	0.0226795	0.0156166	0.108193	0.0849828
chrX	48942699	48942798	8040902	0	-	0.434343	(0.419,0.45]	chrX	838808	60	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	88	2	2.50478	4.206935	5.90909	0.0340831	0.0184411	0.134158	0.0927235
chr11	58598653	58598753	4858366	0	+	0.35	(0.33,0.36]	chr11	465296	134	INTRON	INTRON	ZFP91	ENSG00000186660.15	ENST00000316059.7	protein_coding	protein_coding	protein_coding	protein_coding	2	169	2	3.81375	4.20684	4.59993	0.0141497	5.61262e-4	0.0814658	0.00947545
chr9	134354105	134354205	4260964	0	+	0.6	(0.58,1]	chr9	406311	271	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	59	2	2.78186	4.206519999999999	5.63118	0.0342923	0.0109983	0.13449	0.0708586
chr16	81451929	81452029	6507810	0	+	0.56	(0.523,0.58]	chr16	645906	60	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	3	100	2	2.1913299999999998	4.2063	6.22127	0.0378186	0.00699217	0.140551	0.0555241
chr17	4854017	4854117	6672093	0	+	0.34	(0.33,0.36]	chr17	668609	200	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	76	2	2.8623	4.2056949999999995	5.54909	0.0634783	0.00379428	0.161669	0.0355124
chr2	62894363	62894463	815854	0	+	0.44	(0.419,0.45]	chr2	92141	127	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding	9	718	2	4.16394	4.205605	4.24727	0.00209761	1.73389e-4	0.0288165	0.0040962
chr17	77482534	77482633	6805207	0	+	0.656566	(0.58,1]	chr17	686820	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	56	2	3.1491	4.20524	5.26138	0.021217	0.0154006	0.0996078	0.0869771
chr12	132539139	132539239	5353007	0	+	0.64	(0.58,1]	chr12	523670	108	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.85993	4.2046	4.54927	0.0643046	0.00251049	0.161669	0.026941
chr13	75433080	75433180	5727515	0	-	0.42	(0.419,0.45]	chr13	561722	559	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	3	246	2	3.47648	4.20457	4.93266	0.0145218	2.70433e-4	0.0823112	0.0056322
chr19	1407773	1407802	7187422	0	+	0.62069	(0.58,1]	chr19	731279	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	152	2	3.26123	4.20453	5.14783	0.0257049	4.60275e-5	0.109543	0.0015485
chr19	15642411	15642510	7215377	0	+	0.606061	(0.58,1]	chr19	737133	4	INTRON	INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	202	2	3.55862	4.20443	4.85024	0.00169503	0.00100106	0.0204875	0.0190404
chr2	149614232	149614332	920088	0	+	0.36	(0.33,0.36]	chr2	102788	198	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	2	90	2	3.24899	4.20415	5.15931	0.043896	0.0060494	0.139792	0.0485995
chr8	725961	726061	3932990	0	-	0.47	(0.45,0.485]	chr8	376060	96	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	75	2	2.80521	4.204095	5.60298	0.0681544	0.00292492	0.164505	0.029882
chr8	118024431	118024530	4048867	0	-	0.333333	(0.33,0.36]	chr8	386022	73	INTRON	INTRON	EXT1	ENSG00000182197.13	ENST00000378204.7:ENST00000437196.1:ENST00000436216.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	102	2	2.59821	4.2040500000000005	5.80989	0.017008	0.0164265	0.0923809	0.0877406
chr21	45502222	45502321	7631327	0	+	0.626263	(0.58,1]	chr21	797812	42	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.84993	4.20337	5.55681	0.0297842	0.0126042	0.126591	0.0761905
chr10	124935959	124936059	4605606	0	+	0.38	(0.36,0.39]	chr10	440370	183	INTRON	INTRON	ENSG00000249456	ENSG00000249456.1	ENST00000508096.1	lncRNA	lncRNA	lncRNA	lncRNA	2	90	2	3.16297	4.20307	5.24317	0.0433841	0.00784771	0.138813	0.0575542
chr4	8229656	8229756	2014331	0	+	0.63	(0.58,1]	chr4	205591	4	SS5_PROX	SS5_PROX:INTRON	SH3TC1	ENSG00000125089.18	ENST00000508641.2:ENST00000245105.8:ENST00000506360.5:ENST00000502669.5:ENST00000515682.5:ENST00000457650.7:ENST00000684698.1:ENST00000684537.1:ENST00000682056.1:ENST00000682862.1:ENST00000502350.5:ENST00000511002.6:ENST00000508183.5:ENST00000513495.5:ENST00000507801.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	79	2	3.66231	4.202885	4.74346	0.0122106	0.0121457	0.0754623	0.0752279
chr2	235025877	235025977	1062231	0	+	0.48	(0.45,0.485]	chr2	115620	174	INTRON	INTRON	SH3BP4	ENSG00000130147.16	ENST00000392011.7:ENST00000416021.5:ENST00000409212.5:ENST00000344528.8:ENST00000444916.5:ENST00000446904.5:ENST00000454947.1	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	2.75654	4.20288	5.64922	0.0419966	0.020599	0.149115	0.0982852
chr10	70130944	70131043	4705313	0	-	0.414141	(0.39,0.419]	chr10	448362	65	INTRON	INTRON	AIFM2	ENSG00000042286.15	ENST00000613322.4:ENST00000307864.3	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.30655	4.202805	5.09906	0.0535378	0.0148983	0.150319	0.0847741
chr1	89854153	89854253	181032	0	+	0.45	(0.419,0.45]	chr1	19585	71	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	3	105	2	2.5242	4.20232	5.88044	0.0215368	0.0192645	0.105542	0.0954446
chr4	23776076	23776176	2208447	0	-	0.41	(0.39,0.419]	chr4	223243	105	INTRON	INTRON	PPARGC1A	ENSG00000109819.9	ENST00000509702.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	64	2	2.95235	4.2022949999999994	5.45224	0.032783	0.0307567	0.12741	0.122593
chr18	76437347	76437447	7179493	0	-	0.52	(0.485,0.523]	chr18	730080	567	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	3	98	2	2.38174	4.20177	6.0218	0.0253525	0.00985907	0.115383	0.0670775
chr16	16158501	16158597	6556440	0	-	0.34375	(0.33,0.36]	chr16	653066	3	INTRON	INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	76	2	2.52202	4.201725	5.88143	0.100822	0.00169367	0.196131	0.0204799
chr17	3824092	3824186	6838727	0	-	0.340426	(0.33,0.36]	chr17	691919	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NCBP3	ENSG00000074356.17	ENST00000389005.6:ENST00000574911.5:ENST00000575815.5:ENST00000577169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	86	2	2.41942	4.20161	5.9838	0.0382802	0.0123642	0.141157	0.0758857
chr16	24985797	24985896	6570792	0	-	0.464646	(0.45,0.485]	chr16	655806	64	INTRON	INTRON	ARHGAP17	ENSG00000140750.17	ENST00000289968.11:ENST00000303665.9:ENST00000575975.5:ENST00000455311.6:ENST00000571480.5:ENST00000573625.5:ENST00000573449.5:ENST00000575447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	167	2	4.05096	4.20158	4.3522	0.00915267	9.98881e-4	0.064285	0.0142216
chr6	166955727	166955816	3302052	0	-	0.696629	(0.58,1]	chr6	319756	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000358165.7:ENST00000683158.1:ENST00000683333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	721	2	4.0743	4.201565	4.32883	0.00136577	2.97435e-4	0.0176851	0.00982269
chr7	74500599	74500699	3391833	0	+	0.48	(0.45,0.485]	chr7	327343	461	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	2.57593	4.201415	5.8269	0.093234	0.00167585	0.188571	0.0203806
chr17	36565264	36565364	6725230	0	+	0.36	(0.33,0.36]	chr17	675814	40	INTRON	INTRON	GGNBP2	ENSG00000278311.5	ENST00000613102.5:ENST00000617860.4:ENST00000618837.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	76	2	2.89559	4.201275	5.50696	0.0605295	0.00418696	0.158506	0.0379935
chr20	381766	381849	7414317	0	+	0.759036	(0.58,1]	chr20	772273	3	SS5_PROX	SS5_PROX:INTRON	TRIB3	ENSG00000101255.12	ENST00000615226.4:ENST00000217233.9:ENST00000449710.5:ENST00000422053.3	protein_coding	protein_coding	protein_coding	protein_coding	7	135	2	2.18397	4.201245	6.21852	0.0156512	0.00350812	0.0878675	0.0379357
chrX	133863564	133863664	8114803	0	-	0.35	(0.33,0.36]	chrX	845529	286	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	662	2	3.612	4.201005	4.79001	0.00100355	3.54646e-4	0.0190757	0.00684771
chr22	25619929	25620029	7702313	0	+	0.45	(0.419,0.45]	chr22	806000	151	INTRON	INTRON	GRK3	ENSG00000100077.16	ENST00000324198.11:ENST00000455558.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	81	2	3.00229	4.2008149999999995	5.39934	0.0572793	0.00646489	0.154343	0.0503748
chr13	113046952	113047049	5656104	0	+	0.628866	(0.58,1]	chr13	555179	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000480321.1:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	69	2	3.19823	4.20023	5.20223	0.0287301	0.00411607	0.115888	0.0374453
chr14	91222406	91222502	5899581	0	+	0.520833	(0.485,0.523]	chr14	576435	18	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	64	2	3.68058	4.2001100000000005	4.71964	0.0718646	0.0053378	0.168159	0.0447225
chr1	45586378	45586476	115552	0	+	0.540816	(0.523,0.58]	chr1	14451	18	INTRON	INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000464190.6:ENST00000527359.5:ENST00000528084.5:ENST00000453748.5:ENST00000525515.5:ENST00000527470.5:ENST00000529333.5:ENST00000531532.5:ENST00000530840.5:ENST00000528238.5:ENST00000534101.1:ENST00000470768.5:ENST00000372052.8:ENST00000351223.7:ENST00000629893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	60	2	3.18279	4.20003	5.21727	0.0361597	0.0168396	0.127853	0.0919482
chr10	103699612	103699712	4757096	0	-	0.53	(0.523,0.58]	chr10	454791	61	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	3.18279	4.20003	5.21727	0.0361597	0.0168396	0.127853	0.0919482
chr2	235506838	235506938	1062664	0	+	0.5	(0.485,0.523]	chr2	115651	116	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	75	2	3.04904	4.2	5.35096	0.0457169	0.0047171	0.142336	0.0413976
chr19	16837500	16837599	7217741	0	+	0.555556	(0.523,0.58]	chr19	737614	55	INTRON	INTRON	SIN3B	ENSG00000127511.10	ENST00000248054.10:ENST00000379803.5:ENST00000596802.5	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	2.9513	4.1998750000000005	5.44845	0.0531089	0.00361636	0.149478	0.0342681
chr10	28560632	28560732	4469691	0	+	0.38	(0.36,0.39]	chr10	427649	222	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	86	2	2.86942	4.199645	5.52987	0.0287883	0.0153841	0.115991	0.0869771
chr5	73802961	73803060	2453468	0	+	0.363636	(0.36,0.39]	chr5	244963	72	INTRON	INTRON	ARHGEF28	ENSG00000214944.10	ENST00000545377.5:ENST00000296794.10:ENST00000513042.7:ENST00000426542.6:ENST00000437974.5	protein_coding	protein_coding	protein_coding	protein_coding	2	86	2	2.86942	4.199645	5.52987	0.0287883	0.0153841	0.115991	0.0869771
chr2	32460806	32460906	748822	0	+	0.34	(0.33,0.36]	chr2	87278	65	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	2	84	2	2.75176	4.19939	5.64702	0.0212683	0.0191705	0.0996805	0.0994526
chr12	26790627	26790727	5401176	0	-	0.33	(0.29,0.33]	chr12	528740	4	SS3_PROX	SS3_PROX:INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000545235.1:ENST00000242737.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	62	2	2.84122	4.199294999999999	5.55737	0.0350501	0.0196268	0.137151	0.095549
chr7	102047641	102047741	3436291	0	+	0.33	(0.29,0.33]	chr7	332534	191	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	62	2	2.84122	4.199294999999999	5.55737	0.0350501	0.0196268	0.137151	0.095549
chr7	47395000	47395100	3587742	0	-	0.56	(0.523,0.58]	chr7	346036	250	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	3.13506	4.19919	5.26332	0.0337698	0.0186841	0.124319	0.0976296
chr22	24099072	24099169	7695351	0	+	0.587629	(0.58,1]	chr22	805517	4	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	114	2	2.33176	4.198875	6.06599	0.0144	0.00477081	0.0833845	0.0450109
chr19	950598	950698	7185352	0	+	0.59	(0.58,1]	chr19	730741	175	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	355	2	3.78099	4.1988	4.61661	6.08473e-4	2.6366e-4	0.0144778	0.00554202
chr14	89256109	89256209	6026659	0	-	0.54	(0.523,0.58]	chr14	591432	249	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	267	2	3.47514	4.19873	4.92232	0.00158547	0.00156331	0.0245893	0.0194382
chr19	576777	576876	7184162	0	+	0.606061	(0.58,1]	chr19	730456	10	INTRON	INTRON	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000613627.5:ENST00000576925.4:ENST00000573216.5:ENST00000572899.6:ENST00000333511.9:ENST00000353555.9:ENST00000590218.4:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000574970.2:ENST00000576984.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	64	2	2.47204	4.19866	5.92528	0.0623526	0.0062948	0.181127	0.0523832
chr16	24985397	24985497	6570788	0	-	0.56	(0.523,0.58]	chr16	655806	60	INTRON	INTRON	ARHGAP17	ENSG00000140750.17	ENST00000289968.11:ENST00000303665.9:ENST00000575975.5:ENST00000455311.6:ENST00000571480.5:ENST00000573625.5:ENST00000573449.5:ENST00000575447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	73	2	2.66054	4.198315	5.73609	0.0806884	0.0017613	0.177452	0.0211077
chr8	9771130	9771222	3754887	0	+	0.543478	(0.523,0.58]	chr8	360881	5	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	2.80981	4.198305	5.5868	0.0364868	0.020474	0.139793	0.0979776
chr12	65931406	65931506	5256518	0	+	0.29	[0,0.29]	chr12	512321	160	INTRON	INTRON	HMGA2	ENSG00000149948.14	ENST00000403681.7:ENST00000541363.5:ENST00000393577.7:ENST00000539662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	62	2	3.70802	4.198285	4.68855	0.0554735	0.0045429	0.154188	0.0401487
chr1	153612062	153612159	591014	0	-	0.546392	(0.523,0.58]	chr1	68765	29	INTRON	INTRON	S100A16	ENSG00000188643.11	ENST00000368706.9:ENST00000474991.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	73	2	2.77655	4.198155	5.61976	0.0685533	0.00236826	0.165066	0.0259199
chr10	87886731	87886831	4541722	0	+	0.45	(0.419,0.45]	chr10	433151	59	INTRON	INTRON	PTEN	ENSG00000171862.12	ENST00000688308.1:ENST00000693560.1:ENST00000371953.8:ENST00000688158.1:ENST00000686459.1:ENST00000462694.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	106	2	2.18148	4.19813	6.21478	0.043587	0.011428	0.152811	0.0723462
chr16	58161312	58161409	6598353	0	-	0.329897	(0.29,0.33]	chr16	659848	19	EXON_MRNA	EXON_MRNA:INTRON	CSNK2A2	ENSG00000070770.10	ENST00000262506.8:ENST00000565188.2:ENST00000566813.5:ENST00000676463.1:ENST00000677823.1:ENST00000567730.6:ENST00000563307.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	61	2	3.37208	4.198015	5.02395	0.0445554	0.0113763	0.140478	0.0721226
chr6	36065811	36065910	2904679	0	+	0.313131	(0.29,0.33]	chr6	284907	61	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000622903.4:ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5:ENST00000472333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	61	2	3.37208	4.198015	5.02395	0.0445554	0.0113763	0.140478	0.0721226
chr6	166338547	166338647	3301459	0	-	0.49	(0.485,0.523]	chr6	319660	68	INTRON	INTRON	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000478705.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	73	2	2.66276	4.197635	5.73251	0.0803133	0.00184599	0.177452	0.0217471
chr14	73115131	73115231	5880551	0	+	0.42	(0.419,0.45]	chr14	574077	4	INTRON	INTRON	RBM25	ENSG00000119707.14	ENST00000527432.5:ENST00000261973.12:ENST00000532683.5:ENST00000528081.5:ENST00000527449.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	66	2	3.46155	4.1972249999999995	4.9329	0.0716557	0.0110249	0.168159	0.0711736
chr1	44259717	44259817	459771	0	-	0.54	(0.523,0.58]	chr1	55317	29	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000452396.5	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.27377	4.197134999999999	5.1205	0.0416463	0.0137592	0.136301	0.0814923
chr2	89554800	89554900	1216640	0	-	0.45	(0.419,0.45]	chr2	131064	2	SS3_PROX	SS3_PROX:INTRON	ENSG00000283196	ENSG00000283196.2	ENST00000636531.1:ENST00000635968.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	254	2	3.78113	4.1971050000000005	4.61308	0.00865759	6.47861e-4	0.0623824	0.0104732
chr1	62136620	62136720	153936	0	+	0.44	(0.419,0.45]	chr1	17527	73	INTRON	INTRON	PATJ	ENSG00000132849.22	ENST00000371158.6:ENST00000642238.2:ENST00000484937.5:ENST00000646453.1:ENST00000635137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	118	2	2.82344	4.196975	5.57051	0.0410814	0.00441471	0.136301	0.0393688
chr17	82817927	82818027	6819043	0	+	0.53	(0.523,0.58]	chr17	689314	26	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	60	2	3.08569	4.19682	5.30795	0.0315825	0.020773	0.120781	0.102713
chr22	42985836	42985936	7823991	0	-	0.57	(0.523,0.58]	chr22	820626	261	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	3.08569	4.19682	5.30795	0.0315825	0.020773	0.120781	0.102713
chr19	5901234	5901334	7318283	0	-	0.52	(0.485,0.523]	chr19	755743	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NDUFA11	ENSG00000174886.14	ENST00000418389.6:ENST00000308961.5:ENST00000592634.5:ENST00000593233.1:ENST00000650663.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	81	2	2.66833	4.196815	5.7253	0.0211923	0.0162644	0.104042	0.0873195
chr2	168057510	168057610	1307940	0	-	0.45	(0.419,0.45]	chr2	140195	401	INTRON	INTRON	STK39	ENSG00000198648.11	ENST00000487143.5:ENST00000355999.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	89	2	3.02953	4.19674	5.36395	0.0407485	0.0111596	0.135868	0.071709
chr17	341242	341332	6821701	0	-	0.511111	(0.485,0.523]	chr17	689628	2	UTR5	UTR5:EXON_MRNA:INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000577079.5:ENST00000573780.5:ENST00000575130.5:ENST00000575634.5	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	2.60361	4.19664	5.78967	0.0541523	0.0146211	0.167824	0.0826064
chr3	12965696	12965795	1688786	0	-	0.525253	(0.523,0.58]	chr3	176520	47	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	81	2	2.60398	4.19661	5.78924	0.0241539	0.0147166	0.112732	0.0826843
chr3	66035995	66036095	1815842	0	-	0.58	(0.523,0.58]	chr3	187318	269	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	213	2	4.143	4.196545	4.25009	0.00583753	4.38018e-4	0.0505443	0.00796831
chr16	81447538	81447637	6507766	0	+	0.545455	(0.523,0.58]	chr16	645906	16	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	2.81323	4.196015	5.5788	0.0650388	0.00262418	0.162385	0.0278348
chr5	139653762	139653862	2549698	0	+	0.57	(0.523,0.58]	chr5	253168	22	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	2.81323	4.196015	5.5788	0.0650388	0.00262418	0.162385	0.0278348
chr2	216002653	216002752	1369310	0	-	0.555556	(0.523,0.58]	chr2	145845	58	INTRON	INTRON	MREG:PECR	ENSG00000118242.16:ENSG00000115425.14	ENST00000263268.11:ENST00000620139.4:ENST00000439791.5:ENST00000424992.5:ENST00000420348.1:ENST00000442122.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	91	2	3.7036	4.1957249999999995	4.68785	0.0194172	0.0156851	0.0994526	0.0852152
chr19	949501	949601	7185341	0	+	0.59	(0.58,1]	chr19	730741	164	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	78	2	2.37998	4.19566	6.01134	0.0345705	0.00531709	0.135397	0.047841
chr7	74498703	74498802	3391814	0	+	0.424242	(0.419,0.45]	chr7	327343	442	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	1	82	2	3.08499	4.195235	5.30548	0.0509743	0.00792071	0.148503	0.057762
chr13	98277998	98278098	5635011	0	+	0.3	(0.29,0.33]	chr13	553480	328	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	6	398	2	4.03043	4.19522	4.36001	0.00180892	2.16603e-4	0.026458	0.00477756
chr6	167940236	167940335	3074503	0	+	0.555556	(0.523,0.58]	chr6	298923	71	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7:ENST00000507679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	76	2	3.1364	4.195215	5.25403	0.0400336	0.00573579	0.134064	0.0467736
chr9	133804185	133804285	4428433	0	-	0.51	(0.485,0.523]	chr9	423268	60	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	2.91537	4.1948099999999995	5.47425	0.0298565	0.0243396	0.126732	0.106588
chr16	85456308	85456408	6517634	0	+	0.58	(0.523,0.58]	chr16	646391	970	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	3.30043	4.194625	5.08882	0.0308549	0.00834774	0.119556	0.0598672
chr8	42947807	42947906	3809774	0	+	0.383838	(0.36,0.39]	chr8	366864	40	INTRON	INTRON	HOOK3	ENSG00000168172.9	ENST00000527306.1:ENST00000307602.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	174	2	3.99944	4.19454	4.38964	0.0112853	0.00108674	0.0722436	0.0149957
chr10	102646221	102646321	4576486	0	+	0.6	(0.58,1]	chr10	437279	4	SS5_PROX	SS5_PROX:INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	67	2	3.02751	4.19452	5.36153	0.0385189	0.00273899	0.131324	0.028553
chr16	57372938	57373038	6465993	0	+	0.63	(0.58,1]	chr16	641364	3	SS5_PROX	SS5_PROX:INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.03676	4.19445	5.35214	0.0198789	0.0181452	0.100864	0.0921579
chr9	133856085	133856185	4428959	0	-	0.6	(0.58,1]	chr9	423304	214	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.03676	4.19445	5.35214	0.0198789	0.0181452	0.100864	0.0921579
chr9	133917760	133917860	4429578	0	-	0.62	(0.58,1]	chr9	423310	560	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	3.03676	4.19445	5.35214	0.0198789	0.0181452	0.100864	0.0921579
chr11	129977158	129977258	5146036	0	-	0.45	(0.419,0.45]	chr11	500193	157	INTRON	INTRON	PRDM10	ENSG00000170325.16	ENST00000358825.9:ENST00000360871.8:ENST00000528746.5:ENST00000527581.5:ENST00000531431.1	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.15468	4.194375	5.23407	0.0486006	0.0211324	0.145074	0.103778
chr10	92691169	92691269	4550913	0	+	0.55	(0.523,0.58]	chr10	434375	2	SS3_PROX	SS3_PROX:INTRON	HHEX	ENSG00000152804.11	ENST00000282728.10:ENST00000551454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	97	2	2.39426	4.194285	5.99431	0.024413	0.0104033	0.11333	0.0686837
chr10	103801462	103801562	4758119	0	-	0.42	(0.419,0.45]	chr10	454818	1	SS3_PROX	SS3_PROX:INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.06656	4.194255	5.32195	0.0431627	0.0252325	0.138403	0.114921
chr2	20999406	20999500	1100414	0	-	0.361702	(0.36,0.39]	chr2	119926	2	EXON_LNCRNA	EXON_LNCRNA	ENSG00000261012	ENSG00000261012.2	ENST00000567376.2	lncRNA	lncRNA	lncRNA	lncRNA	1	67	2	3.62454	4.19422	4.7639	0.0811309	0.00730728	0.177951	0.0550647
chr1	50819561	50819661	478331	0	-	0.5	(0.485,0.523]	chr1	56828	175	INTRON	INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	3.21778	4.19395	5.17012	0.038581	0.0157761	0.131324	0.0884237
chr21	44871171	44871269	7678554	0	-	0.469388	(0.45,0.485]	chr21	802773	52	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	201	2	3.05005	4.19393	5.33781	0.0143244	0.0054758	0.0821586	0.0454065
chr16	67913887	67913987	6473537	0	+	0.51	(0.485,0.523]	chr16	642897	38	INTRON	INTRON	PSKH1	ENSG00000159792.10	ENST00000291041.6	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.12385	4.1937999999999995	5.26375	0.0335928	0.0193526	0.124319	0.0994526
chr20	44360939	44361039	7482517	0	+	0.51	(0.485,0.523]	chr20	779618	47	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.12385	4.1937999999999995	5.26375	0.0335928	0.0193526	0.124319	0.0994526
chr17	317327	317426	6821449	0	-	0.575758	(0.523,0.58]	chr17	689582	108	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	83	2	2.39285	4.19358	5.99431	0.0376513	0.0104033	0.140049	0.0686837
chr16	50623001	50623100	6452159	0	+	0.626263	(0.58,1]	chr16	639918	9	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	8	419	2	3.6876	4.193555	4.69951	5.01878e-4	2.00924e-4	0.0129939	0.00455574
chrX	133869463	133869563	8114862	0	-	0.45	(0.419,0.45]	chrX	845529	345	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	87	2	2.86526	4.192995	5.52073	0.0327198	0.0160871	0.122543	0.0896852
chr11	57315560	57315657	5038377	0	-	0.597938	(0.58,1]	chr11	488060	13	INTRON	INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	77	2	2.43115	4.192845	5.95454	0.0309513	0.0059453	0.127822	0.0506158
chr12	26531550	26531650	5398539	0	-	0.31	(0.29,0.33]	chr12	528527	359	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	2	81	2	2.68671	4.192775	5.69884	0.0206777	0.0155382	0.102713	0.0849828
chr1	3892163	3892259	386343	0	-	0.6875	(0.58,1]	chr1	44329	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C1orf174	ENSG00000198912.12	ENST00000474140.1:ENST00000486765.5:ENST00000361605.4:ENST00000679703.1:ENST00000680054.1:ENST00000680279.1:ENST00000681823.1:ENST00000679946.1:ENST00000680169.1:ENST00000680535.1:ENST00000679929.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	66	2	2.79178	4.19251	5.59324	0.0565563	0.0014734	0.154343	0.0185589
chr13	98277798	98277898	5635009	0	+	0.44	(0.419,0.45]	chr13	553480	326	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.1968	4.19242	5.18804	0.051668	0.0193853	0.148503	0.0994526
chr2	11580603	11580703	720679	0	+	0.47	(0.45,0.485]	chr2	84134	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000263834.9:ENST00000389825.7:ENST00000381483.6:ENST00000234142.9	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.1756	4.19233	5.20906	0.0399616	0.0180699	0.133954	0.0953579
chr16	84778097	84778196	6514625	0	+	0.373737	(0.36,0.39]	chr16	646345	25	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569925.1:ENST00000567526.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	85	2	2.67993	4.1922500000000005	5.70457	0.0231725	0.022152	0.109982	0.101784
chr3	51663717	51663816	1472177	0	+	0.494949	(0.485,0.523]	chr3	157989	4	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	2.85123	4.192155	5.53308	0.0614408	0.00304306	0.158506	0.0306636
chr17	17742050	17742150	6689456	0	+	0.59	(0.58,1]	chr17	671344	175	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	2.83384	4.19181	5.54978	0.0529065	0.00165911	0.14912	0.0202545
chr10	80415853	80415952	4534894	0	+	0.494949	(0.485,0.523]	chr10	432649	16	INTRON	INTRON	PRXL2A	ENSG00000122378.14	ENST00000372188.5:ENST00000615554.4:ENST00000372185.5:ENST00000606162.6:ENST00000372187.9	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	2.53228	4.19179	5.8513	0.0614918	0.0131886	0.18013	0.0785398
chr12	46783729	46783829	5221032	0	+	0.5	(0.485,0.523]	chr12	506670	1313	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2	lncRNA	lncRNA	lncRNA	lncRNA	1	66	2	2.53228	4.19179	5.8513	0.0614918	0.0131886	0.18013	0.0785398
chr10	91412863	91412962	4546544	0	+	0.50505	(0.485,0.523]	chr10	433731	19	INTRON	INTRON	HECTD2	ENSG00000165338.17	ENST00000631422.1:ENST00000446394.5:ENST00000298068.10:ENST00000371681.8	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.26255	4.1917349999999995	5.12092	0.0414411	0.0142848	0.136301	0.0833845
chr17	72561814	72561914	6963929	0	-	0.56	(0.523,0.58]	chr17	710389	274	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	67	2	3.87732	4.191625	4.50593	0.094303	0.00318505	0.188571	0.0316631
chr7	139682368	139682468	3722969	0	-	0.51	(0.485,0.523]	chr7	357498	503	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.07448	4.191425	5.30837	0.0314138	0.0214987	0.12069	0.10537
chr7	111217008	111217108	3684234	0	-	0.4	(0.39,0.419]	chr7	354615	2531	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	66	2	3.55811	4.19125	4.82439	0.0762206	0.00853617	0.174484	0.0610387
chr15	60588388	60588488	6285404	0	-	0.35	(0.33,0.36]	chr15	619515	297	INTRON	INTRON	RORA	ENSG00000069667.16	ENST00000335670.11:ENST00000261523.9:ENST00000309157.8:ENST00000449337.6:ENST00000551975.5:ENST00000560004.5:ENST00000559343.1:ENST00000558234.1:ENST00000557822.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	256	2	4.09324	4.191235	4.28923	0.00389045	0.0013058	0.0402085	0.0171747
chr2	235516330	235516430	1062759	0	+	0.39	(0.36,0.39]	chr2	115651	211	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	63	2	3.05132	4.19119	5.33106	0.0383628	0.0252548	0.131324	0.114966
chr5	126798694	126798794	2526430	0	+	0.38	(0.36,0.39]	chr5	250720	205	INTRON	INTRON	LMNB1	ENSG00000113368.12	ENST00000460265.5:ENST00000261366.10:ENST00000504788.5:ENST00000472034.5:ENST00000492190.5:ENST00000395354.1:ENST00000463908.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	63	2	3.05132	4.19119	5.33106	0.0383628	0.0252548	0.131324	0.114966
chr10	75709957	75710057	4523263	0	+	0.4	(0.39,0.419]	chr10	432271	620	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	68	2	3.68433	4.191155	4.69798	0.088901	0.00637588	0.183874	0.0501889
chr4	158209095	158209195	2155660	0	+	0.41	(0.39,0.419]	chr4	218400	50	INTRON	INTRON	TMEM144	ENSG00000164124.11	ENST00000505189.5:ENST00000505049.5:ENST00000511038.5	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.68433	4.191155	4.69798	0.088901	0.00637588	0.183874	0.0501889
chr11	46114121	46114221	5030762	0	-	0.37	(0.36,0.39]	chr11	486583	215	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000689695.1:ENST00000685188.1:ENST00000532883.5:ENST00000524497.5:ENST00000693122.1:ENST00000529734.5:ENST00000529782.5:ENST00000688222.1:ENST00000690039.1:ENST00000533757.5:ENST00000525438.5:ENST00000692265.1:ENST00000527782.5:ENST00000532010.5:ENST00000528893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	68	2	2.5517	4.19112	5.83054	0.0637554	0.0182399	0.184651	0.0921579
chr11	70945710	70945810	5063748	0	-	0.56	(0.523,0.58]	chr11	492740	488	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000618363.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	61	2	2.86937	4.19092	5.51247	0.0324455	0.0230387	0.130548	0.102982
chr6	156937109	156937209	3051058	0	+	0.42	(0.419,0.45]	chr6	297016	7	UTR3	UTR3:EXON_MRNA:INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000636748.1:ENST00000414678.7:ENST00000638000.1:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	97	2	3.39352	4.190595	4.98767	0.0669167	0.00473168	0.16272	0.0413976
chr2	70032926	70033025	1178303	0	-	0.464646	(0.45,0.485]	chr2	128194	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	PCBP1-AS1	ENSG00000179818.16	ENST00000419542.5:ENST00000682294.1:ENST00000684630.1:ENST00000630975.3:ENST00000435880.6:ENST00000629339.3:ENST00000667874.1:ENST00000628659.2:ENST00000628308.2:ENST00000626515.2:ENST00000625447.2:ENST00000628305.2:ENST00000625625.2:ENST00000625864.2:ENST00000630522.2:ENST00000628837.2:ENST00000627325.2:ENST00000629084.2:ENST00000629603.2:ENST00000625215.2:ENST00000627189.2:ENST00000629836.2:ENST00000626898.2:ENST00000628883.2:ENST00000629533.2:ENST00000627181.2:ENST00000630214.2:ENST00000627918.2:ENST00000628374.2:ENST00000627327.2:ENST00000626495.2:ENST00000629605.2:ENST00000626370.2:ENST00000626842.2:ENST00000630457.2:ENST00000629184.2:ENST00000628551.2:ENST00000630746.2:ENST00000627398.2:ENST00000457076.5:ENST00000625783.2:ENST00000625490.2:ENST00000627050.2:ENST00000630759.2:ENST00000628667.2:ENST00000626632.2:ENST00000631110.2:ENST00000626609.2:ENST00000629506.2:ENST00000630985.2:ENST00000413436.5:ENST00000628147.2:ENST00000631107.2:ENST00000629415.2:ENST00000418564.5:ENST00000630280.2:ENST00000415222.5:ENST00000628322.2:ENST00000626440.2:ENST00000665708.1:ENST00000655086.1:ENST00000420309.6:ENST00000627487.3:ENST00000670036.1:ENST00000655096.1:ENST00000685127.1:ENST00000684907.1:ENST00000685079.1:ENST00000687866.1:ENST00000692564.1:ENST00000686517.1:ENST00000689138.1:ENST00000688056.1:ENST00000594376.6:ENST00000692333.1:ENST00000688045.1:ENST00000657291.1:ENST00000691987.1:ENST00000664483.1:ENST00000601431.6:ENST00000685803.1:ENST00000690200.1:ENST00000686800.1:ENST00000684857.1:ENST00000627037.2:ENST00000629212.2:ENST00000688473.1:ENST00000456161.5:ENST00000627074.2:ENST00000419963.5:ENST00000625227.2:ENST00000599673.5:ENST00000629407.2:ENST00000612430.3:ENST00000418308.5:ENST00000630283.2:ENST00000629178.2:ENST00000627542.2:ENST00000626574.2:ENST00000596028.5:ENST00000629485.2:ENST00000630685.2:ENST00000452431.5:ENST00000629374.2:ENST00000423402.5:ENST00000411429.5:ENST00000629188.2:ENST00000434781.5:ENST00000626162.2:ENST00000654878.1:ENST00000659586.1:ENST00000457770.6:ENST00000415742.5:ENST00000627540.2:ENST00000628263.2:ENST00000657575.2:ENST00000689275.1:ENST00000687961.1:ENST00000693279.1:ENST00000416395.6:ENST00000692733.1:ENST00000654336.1:ENST00000686055.1:ENST00000626509.3:ENST00000425601.6:ENST00000666075.1:ENST00000653064.1:ENST00000656326.1:ENST00000668711.1:ENST00000665172.1:ENST00000630520.3:ENST00000663209.1:ENST00000659305.1:ENST00000654601.1:ENST00000663375.1:ENST00000654958.1:ENST00000665838.1:ENST00000653606.1:ENST00000659941.1:ENST00000669583.1:ENST00000660903.1:ENST00000653596.1:ENST00000656308.1:ENST00000449178.6:ENST00000625955.3:ENST00000655140.1:ENST00000661989.1:ENST00000664419.1:ENST00000670785.1:ENST00000664773.1:ENST00000661703.1:ENST00000658454.1:ENST00000664049.1:ENST00000655058.1:ENST00000366234.7:ENST00000599427.5:ENST00000597318.5:ENST00000625518.2:ENST00000425333.5:ENST00000429599.6:ENST00000432604.5:ENST00000421843.5:ENST00000458686.5:ENST00000421255.5:ENST00000413069.5:ENST00000627019.1	lncRNA	lncRNA	lncRNA	lncRNA	1	64	2	3.60494	4.190325	4.77571	0.0719884	0.00682726	0.168159	0.0525149
chr3	42646369	42646467	1452455	0	+	0.346939	(0.33,0.36]	chr3	155084	5	UTR3	UTR3:EXON_MRNA	NKTR	ENSG00000114857.19	ENST00000429888.5:ENST00000232978.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	62	2	3.22121	4.19026	5.15931	0.043896	0.0171454	0.139792	0.0923809
chr12	23940576	23940675	5388431	0	-	0.323232	(0.29,0.33]	chr12	528193	196	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000537393.5:ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2:ENST00000538083.1:ENST00000536729.2:ENST00000446891.7:ENST00000536850.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	112	2	3.25251	4.190105	5.1277	0.0382902	0.00304972	0.131324	0.0307214
chr16	87490768	87490868	6656003	0	-	0.48	(0.45,0.485]	chr16	665821	303	INTRON	INTRON	ZCCHC14	ENSG00000140948.13	ENST00000268616.9:ENST00000671377.2:ENST00000568020.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	233	2	3.78752	4.19	4.59248	0.00671773	5.11238e-4	0.0541867	0.00887014
chr16	89432425	89432524	6661158	0	-	0.565657	(0.523,0.58]	chr16	666753	7	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	356	2	3.24866	4.1899750000000004	5.13129	0.0114706	2.01717e-5	0.0724928	8.45883e-4
chr2	78263694	78263794	1210087	0	-	0.39	(0.36,0.39]	chr2	130071	3235	INTRON	INTRON	ENSG00000227088	ENSG00000227088.2	ENST00000667782.1	lncRNA	lncRNA	lncRNA	lncRNA	3	236	2	3.45372	4.189795	4.92587	0.0137959	2.49899e-4	0.0803169	0.00531531
chr17	80561575	80561675	6809068	0	+	0.47	(0.45,0.485]	chr17	687806	154	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	102	2	2.38898	4.189565	5.99015	0.0698506	0.00110015	0.167349	0.015136
chr11	2695095	2695195	4972262	0	-	0.51	(0.485,0.523]	chr11	481197	869	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	5	293	2	3.57711	4.189525	4.80194	0.00200206	8.00558e-4	0.0281204	0.0121664
chr3	42648143	42648242	1452473	0	+	0.424242	(0.419,0.45]	chr3	155084	23	UTR3	UTR3:EXON_MRNA	NKTR	ENSG00000114857.19	ENST00000429888.5:ENST00000232978.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	109	2	2.45271	4.189515	5.92632	0.0704264	0.00191339	0.168159	0.0223437
chr2	235516430	235516529	1062760	0	+	0.454545	(0.45,0.485]	chr2	115651	212	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	65	2	2.62955	4.18934	5.74913	0.0530416	0.017574	0.167062	0.0906595
chr1	39115807	39115907	93779	0	+	0.44	(0.419,0.45]	chr1	11068	97	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000689911.1:ENST00000567887.5:ENST00000372915.8:ENST00000472385.2:ENST00000693209.1:ENST00000524432.5:ENST00000467673.5:ENST00000688212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	65	2	3.39073	4.1892	4.98767	0.0669167	0.0128682	0.16272	0.0778066
chr3	13200725	13200825	1691149	0	-	0.45	(0.419,0.45]	chr3	176566	362	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.39073	4.1892	4.98767	0.0669167	0.0128682	0.16272	0.0778066
chr2	168094123	168094223	1308309	0	-	0.54	(0.523,0.58]	chr2	140215	185	INTRON	INTRON	STK39	ENSG00000198648.11	ENST00000487143.5:ENST00000355999.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	73	2	2.53438	4.189055	5.84373	0.0957531	0.00133116	0.189038	0.0173248
chr7	1121757	1121857	3527446	0	-	0.64	(0.58,1]	chr7	340591	119	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	259	2	3.35429	4.189045	5.0238	0.00102958	6.75292e-4	0.0153083	0.0144685
chr9	134332248	134332348	4260745	0	+	0.61	(0.58,1]	chr9	406311	52	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	59	2	2.71042	4.1887	5.66698	0.0396128	0.0102927	0.143388	0.0684871
chr10	102651270	102651370	4576537	0	+	0.66	(0.58,1]	chr10	437284	16	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1:ENST00000487927.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	70	2	3.29173	4.188535	5.08534	0.0243429	0.00549379	0.106588	0.0454065
chr22	23773775	23773874	7693458	0	+	0.666667	(0.58,1]	chr22	805203	4	INTRON	INTRON	MMP11	ENSG00000099953.10	ENST00000465385.5:ENST00000477567.5:ENST00000489582.5:ENST00000428253.1:ENST00000465730.1:ENST00000215743.8:ENST00000437086.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	116	2	3.41854	4.18834	4.95814	0.00841183	0.0074469	0.0616845	0.0553519
chr20	32365385	32365485	7455752	0	+	0.48	(0.45,0.485]	chr20	776113	42	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000646367.1:ENST00000644587.1:ENST00000620121.4:ENST00000645337.1:ENST00000649901.1:ENST00000646985.1:ENST00000645035.1:ENST00000497249.6:ENST00000643168.1:ENST00000375689.5:ENST00000306058.9:ENST00000555343.2:ENST00000645688.1:ENST00000642676.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	85	2	3.12149	4.188295	5.2551	0.0373953	0.00776276	0.130656	0.0570408
chr17	29131082	29131182	6876473	0	-	0.56	(0.523,0.58]	chr17	697995	3	SS5_PROX	SS5_PROX:INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000590242.5:ENST00000528564.2:ENST00000528322.6:ENST00000585573.6:ENST00000533420.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	82	2	2.43762	4.18813	5.93864	0.0343548	0.0114442	0.134666	0.0723462
chr10	119894644	119894744	4597224	0	+	0.46	(0.45,0.485]	chr10	439450	13	INTRON	INTRON	SEC23IP	ENSG00000107651.14	ENST00000369075.8:ENST00000470478.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	61	2	3.26377	4.188035	5.1123	0.0458344	0.0149252	0.142336	0.0848525
chr1	61118528	61118627	146465	0	+	0.444444	(0.419,0.45]	chr1	17144	63	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	301	2	2.77652	4.18795	5.59938	0.032931	4.01068e-5	0.122772	0.00139833
chr9	134370971	134371071	4261133	0	+	0.68	(0.58,1]	chr9	406311	440	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	112	2	2.44108	4.18791	5.93474	0.0372253	5.58693e-4	0.1304	0.00944382
chr10	103837316	103837416	4758478	0	-	0.5	(0.485,0.523]	chr10	454819	356	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	2.38071	4.187725	5.99474	0.0388914	0.0103305	0.142578	0.0684871
chr6	158328467	158328567	3061806	0	+	0.47	(0.45,0.485]	chr6	297592	138	INTRON	INTRON	ENSG00000274023:TULP4	ENSG00000274023.1:ENSG00000130338.13	ENST00000619713.1:ENST00000367097.8:ENST00000367094.6:ENST00000616856.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	1	61	2	3.03233	4.18767	5.34301	0.0328801	0.0244076	0.122593	0.113311
chr16	81622200	81622299	6509519	0	+	0.50505	(0.485,0.523]	chr16	645926	1	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.02337	4.18752	5.35167	0.0294163	0.023933	0.116079	0.111785
chr2	219124510	219124610	1372770	0	-	0.56	(0.523,0.58]	chr2	146362	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NHEJ1	ENSG00000187736.13	ENST00000356853.10:ENST00000409720.5:ENST00000418099.5:ENST00000494211.5:ENST00000426304.5:ENST00000491159.5:ENST00000483627.1:ENST00000457600.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	80	2	2.71726	4.187375	5.65749	0.0188054	0.0182707	0.0980631	0.0921579
chr22	24112569	24112668	7695491	0	+	0.585859	(0.58,1]	chr22	805529	94	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	56	2	3.48503	4.18724	4.88945	0.0388928	0.006811	0.131324	0.0524379
chr13	40627147	40627247	5692937	0	-	0.55	(0.523,0.58]	chr13	558751	640	INTRON	INTRON	FOXO1	ENSG00000150907.10	ENST00000379561.6:ENST00000655267.1:ENST00000660760.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	2.68276	4.187165	5.69157	0.0464998	0.0172851	0.156036	0.0897247
chr15	78925536	78925632	6336919	0	-	0.625	(0.58,1]	chr15	624687	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CTSH	ENSG00000103811.18	ENST00000677011.1:ENST00000220166.10:ENST00000676639.1:ENST00000676510.1:ENST00000678727.1:ENST00000679334.1:ENST00000679017.1:ENST00000677810.1:ENST00000676763.1:ENST00000678886.1:ENST00000677921.1:ENST00000676596.1:ENST00000678114.1:ENST00000678487.1:ENST00000649928.2:ENST00000527715.6:ENST00000530010.6:ENST00000676671.1:ENST00000534533.6:ENST00000678283.1:ENST00000678841.1:ENST00000679125.1:ENST00000677316.1:ENST00000678031.1:ENST00000678644.1:ENST00000676808.1:ENST00000677207.1:ENST00000676486.1:ENST00000677238.1:ENST00000678281.1:ENST00000678799.1:ENST00000525807.6:ENST00000676588.1:ENST00000528191.6:ENST00000678817.1:ENST00000676880.1:ENST00000528741.6:ENST00000678415.1:ENST00000679172.1:ENST00000533777.5:ENST00000534237.6:ENST00000677448.1:ENST00000677534.1:ENST00000677367.1:ENST00000678397.1:ENST00000679047.1:ENST00000676865.1:ENST00000677102.1:ENST00000677874.1:ENST00000677254.1:ENST00000677936.1:ENST00000678940.1:ENST00000677789.1:ENST00000615999.5:ENST00000677049.1:ENST00000678033.1:ENST00000679211.1:ENST00000676850.1:ENST00000534268.6:ENST00000529861.6:ENST00000676738.1:ENST00000527138.6:ENST00000677320.1:ENST00000529612.6:ENST00000676668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	1	71	2	3.35086	4.186999999999999	5.02314	0.0218816	0.00638322	0.101015	0.0501889
chr8	127850636	127850735	3918349	0	+	0.313131	(0.29,0.33]	chr8	374180	40	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000655594.1	lncRNA	lncRNA	lncRNA	lncRNA	4	118	2	2.77969	4.186875	5.59406	0.0184845	0.00738294	0.0928429	0.0553345
chr12	46630095	46630195	5219495	0	+	0.41	(0.39,0.419]	chr12	506666	583	INTRON	INTRON	ENSG00000257261:ENSG00000272369	ENSG00000257261.7:ENSG00000272369.1	ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2:ENST00000607353.1	lncRNA	lncRNA	lncRNA	lncRNA	1	63	2	3.00168	4.1867	5.37172	0.0367885	0.0279244	0.129052	0.121102
chr2	74032904	74033003	834328	0	+	0.424242	(0.419,0.45]	chr2	94249	294	INTRON	INTRON	TET3	ENSG00000187605.16	ENST00000409262.8:ENST00000305799.8	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	2.61392	4.18664	5.75936	0.0961463	0.00285253	0.189169	0.0294017
chr17	7110666	7110764	6847740	0	-	0.387755	(0.36,0.39]	chr17	693423	14	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	278	2	3.90952	4.185855	4.46219	0.00501037	6.35555e-4	0.0464308	0.0103289
chr11	70741984	70742084	5061701	0	-	0.5	(0.485,0.523]	chr11	492701	241	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	213	2	4.00372	4.1858450000000005	4.36797	0.00465099	6.77954e-4	0.0445117	0.0108407
chr16	50598797	50598897	6451915	0	+	0.6	(0.58,1]	chr16	639902	402	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	57	2	3.60807	4.185455	4.76284	0.0471737	0.00495688	0.143232	0.0425347
chr2	239275881	239275981	1391467	0	-	0.59	(0.58,1]	chr2	148740	243	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	57	2	3.60807	4.185455	4.76284	0.0471737	0.00495688	0.143232	0.0425347
chr14	20687692	20687789	5755017	0	+	0.309278	(0.29,0.33]	chr14	564397	26	INTRON	INTRON	ANG:RNASE4:ENSG00000259171	ENSG00000214274.10:ENSG00000258818.4:ENSG00000259171.1	ENST00000336811.10:ENST00000555835.3:ENST00000397995.2:ENST00000553909.1:ENST00000554073.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	81	2	2.88962	4.185345	5.48107	0.0222022	0.0130602	0.101857	0.0784929
chr17	72867790	72867890	6966966	0	-	0.38	(0.36,0.39]	chr17	710518	176	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	63	2	3.26869	4.184545	5.1004	0.0526991	0.016118	0.14912	0.0897679
chr8	108461474	108461573	3902502	0	+	0.363636	(0.36,0.39]	chr8	372963	52	INTRON	INTRON	EMC2	ENSG00000104412.8	ENST00000220853.8:ENST00000517784.5:ENST00000519642.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	3.26869	4.184545	5.1004	0.0526991	0.016118	0.14912	0.0897679
chr20	8304574	8304673	7428308	0	+	0.474747	(0.45,0.485]	chr20	773686	478	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	90	2	2.08776	4.18453	6.2813	0.0696113	0.00719875	0.194713	0.056408
chr1	228143727	228143827	358021	0	+	0.68	(0.58,1]	chr1	40401	15	INTRON	INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	145	2	4.0743	4.1845	4.2947	0.00338022	0.00136577	0.0371948	0.0176851
chr2	10190803	10190903	718209	0	+	0.44	(0.419,0.45]	chr2	84002	347	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	64	2	3.27753	4.18443	5.09133	0.0586308	0.0163857	0.155565	0.0910838
chr10	87083773	87083873	4722917	0	-	0.47	(0.45,0.485]	chr10	450816	40	INTRON	INTRON	GLUD1	ENSG00000148672.10	ENST00000277865.5:ENST00000684699.1:ENST00000682396.1:ENST00000683022.1:ENST00000683269.1:ENST00000683256.1:ENST00000681987.1:ENST00000684032.1:ENST00000684338.1:ENST00000684201.1:ENST00000682507.1:ENST00000683783.1:ENST00000681988.1:ENST00000682622.1:ENST00000684546.1:ENST00000684372.1:ENST00000682833.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	224	2	3.81852	4.18416	4.5498	0.00366121	0.0012641	0.0389784	0.0167694
chr14	23521501	23521601	5757169	0	+	0.38	(0.36,0.39]	chr14	564963	67	INTRON	INTRON	ZFHX2-AS1	ENSG00000157306.14	ENST00000556354.5:ENST00000553985.1:ENST00000554403.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	86	2	2.42193	4.1841550000000005	5.9463800000000004	0.0391325	0.0151971	0.142703	0.084474
chr16	16004019	16004119	6406544	0	+	0.39	(0.36,0.39]	chr16	633005	539	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	63	2	2.95428	4.184089999999999	5.4139	0.0340874	0.0305895	0.126768	0.125059
chr20	62956464	62956564	7508260	0	+	0.65	(0.58,1]	chr20	783171	3	SS3_PROX	SS3_PROX:INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5:ENST00000411611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	57	2	2.84993	4.18403	5.51813	0.0297842	0.013519	0.126591	0.0792526
chr17	55417014	55417113	6930503	0	-	0.424242	(0.419,0.45]	chr17	706230	24	INTRON	INTRON	MMD	ENSG00000108960.9	ENST00000262065.8:ENST00000649377.1:ENST00000571578.1	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	2.92337	4.18392	5.44447	0.0364384	0.0333415	0.133139	0.128173
chr11	70766565	70766665	5061947	0	-	0.42	(0.419,0.45]	chr11	492701	487	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	82	2	3.11154	4.183845	5.25615	0.0490796	0.00879729	0.146142	0.0615125
chr17	81077100	81077200	6813792	0	+	0.62	(0.58,1]	chr17	688118	7	INTRON	INTRON	BAIAP2	ENSG00000175866.16	ENST00000321280.11:ENST00000576470.5:ENST00000575750.5:ENST00000428708.7:ENST00000572329.5:ENST00000575989.5:ENST00000575712.5:ENST00000575245.5:ENST00000321300.10:ENST00000435091.7:ENST00000573894.5:ENST00000571530.5:ENST00000572918.5:ENST00000573017.5:ENST00000575958.5:ENST00000573659.5:ENST00000572073.5:ENST00000573677.5:ENST00000574804.5:ENST00000576364.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	55	2	3.20215	4.18334	5.16453	0.0249802	0.0136092	0.10758	0.0811697
chr19	39156850	39156950	7259577	0	+	0.7	(0.58,1]	chr19	744159	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PAK4	ENSG00000130669.17	ENST00000602004.1:ENST00000599470.5:ENST00000360442.8:ENST00000321944.8:ENST00000593480.5:ENST00000358301.7:ENST00000593690.5:ENST00000599386.5:ENST00000599657.5	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.20215	4.18334	5.16453	0.0249802	0.0136092	0.10758	0.0811697
chr9	124490081	124490181	4402623	0	-	0.47	(0.45,0.485]	chr9	419805	67	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	2.98123	4.18313	5.38503	0.0308908	0.0270875	0.119556	0.119337
chr13	113588344	113588444	5658883	0	+	0.5	(0.485,0.523]	chr13	555775	21	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	97	2	2.64094	4.18312	5.7253	0.0162644	0.014004	0.0873195	0.0828403
chr1	162523447	162523547	257045	0	+	0.31	(0.29,0.33]	chr1	30600	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2:ENST00000282169.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	3.28897	4.182865	5.07676	0.0412683	0.0137233	0.136301	0.0814223
chr2	165938163	165938261	1301065	0	-	0.316327	(0.29,0.33]	chr2	139566	6	INTRON	INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000679840.1:ENST00000680448.1:ENST00000681606.1:ENST00000679671.1:ENST00000464374.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	60	2	3.28897	4.182865	5.07676	0.0412683	0.0137233	0.136301	0.0814223
chr2	239278279	239278379	1391491	0	-	0.3	(0.29,0.33]	chr2	148740	267	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	60	2	3.28897	4.182865	5.07676	0.0412683	0.0137233	0.136301	0.0814223
chr19	15642013	15642113	7215373	0	+	0.58	(0.523,0.58]	chr19	737132	4	SS5_PROX	SS5_PROX:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	122	2	3.21923	4.182625	5.14602	0.0173863	0.00734367	0.0901374	0.0550721
chr2	39474706	39474797	765380	0	+	0.285714	[0,0.29]	chr2	88616	3	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MAP4K3-DT	ENSG00000231312.8	ENST00000659562.1:ENST00000426083.5:ENST00000667600.1:ENST00000443038.1:ENST00000451547.2:ENST00000671403.1:ENST00000658319.1:ENST00000445520.7:ENST00000658048.1:ENST00000422128.6:ENST00000670934.1:ENST00000449569.6:ENST00000425775.2:ENST00000662313.1:ENST00000658057.1:ENST00000668952.1:ENST00000446698.5	lncRNA	lncRNA	lncRNA	lncRNA	2	79	2	2.44641	4.18249	5.91857	0.0325321	0.00698542	0.130831	0.0555241
chr17	40135643	40135741	6732838	0	+	0.5	(0.485,0.523]	chr17	677123	14	UTR3	UTR3:EXON_MRNA	MSL1	ENSG00000188895.12	ENST00000398532.9:ENST00000339569.9:ENST00000580086.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	99	2	2.15873	4.1817649999999995	6.2048	0.0938146	5.23665e-4	0.188571	0.0090184
chr10	103700410	103700510	4757104	0	-	0.6	(0.58,1]	chr10	454791	69	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	190	2	3.6542	4.181445	4.70869	0.00515995	1.95782e-4	0.0472296	0.00445752
chr20	4863704	4863803	7517181	0	-	0.585859	(0.58,1]	chr20	784832	4	INTRON	INTRON	SLC23A2	ENSG00000089057.15	ENST00000379333.5:ENST00000338244.6:ENST00000423430.1	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.1491	4.1814350000000005	5.21377	0.0230012	0.0154006	0.102982	0.0869771
chr6	140710639	140710739	3278837	0	-	0.35	(0.33,0.36]	chr6	317145	468	INTRON	INTRON	ENSG00000234147	ENSG00000234147.3	ENST00000650553.2	lncRNA	lncRNA	lncRNA	lncRNA	1	62	2	2.93873	4.1812000000000005	5.42367	0.0305837	0.0299185	0.126768	0.116945
chr17	42238027	42238127	6903480	0	-	0.41	(0.39,0.419]	chr17	702203	55	INTRON	INTRON	STAT5B	ENSG00000173757.10	ENST00000293328.8:ENST00000468312.1:ENST00000415845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	77	2	2.86613	4.180995	5.49586	0.0665161	0.00479873	0.162469	0.0416285
chr5	150028102	150028199	2564129	0	+	0.463918	(0.45,0.485]	chr5	254732	6	INTRON	INTRON	HMGXB3	ENSG00000113716.13	ENST00000613459.4:ENST00000503427.5:ENST00000502717.6:ENST00000514469.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	163	2	3.8937	4.18089	4.46808	0.0120816	7.25143e-4	0.0745767	0.0113618
chr14	70024846	70024945	5872631	0	+	0.494949	(0.485,0.523]	chr14	573363	10	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	2.60361	4.180725	5.75784	0.0541523	0.0154142	0.167824	0.0849828
chr6	129668481	129668581	3259500	0	-	0.54	(0.523,0.58]	chr6	315424	261	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	3.09806	4.18069	5.26332	0.0337698	0.00764666	0.124319	0.0563517
chr10	79176614	79176714	4533123	0	+	0.56	(0.523,0.58]	chr10	432438	141	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.10715	4.1805900000000005	5.25403	0.0418959	0.00573579	0.136901	0.0467736
chr17	7107907	7108007	6847710	0	-	0.7	(0.58,1]	chr17	693413	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	249	2	3.75306	4.18017	4.60728	0.00418391	6.02363e-5	0.0419889	0.00187724
chr20	46649210	46649310	7568984	0	-	0.47	(0.45,0.485]	chr20	790913	351	INTRON	INTRON	SLC13A3	ENSG00000158296.14	ENST00000290317.9:ENST00000279027.9:ENST00000472148.5:ENST00000413164.6:ENST00000468915.5:ENST00000372121.5:ENST00000417157.2	protein_coding	protein_coding	protein_coding	protein_coding	2	86	2	3.19847	4.17998	5.16149	0.0427653	0.00642738	0.13762	0.0503748
chr5	70070140	70070240	2444318	0	+	0.34	(0.33,0.36]	chr5	243764	1	SS3_PROX	SS3_PROX:INTRON	SMN2	ENSG00000205571.14	ENST00000511812.5:ENST00000626847.2:ENST00000506734.5:ENST00000380742.8:ENST00000380743.9:ENST00000614240.4:ENST00000380741.8:ENST00000628696.2:ENST00000638794.1:ENST00000503678.5:ENST00000511873.6:ENST00000509805.5:ENST00000505346.5:ENST00000514914.1:ENST00000508258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	87	2	3.15236	4.179615	5.20687	0.041040600000000003	0.00764784	0.136289	0.0563517
chr1	8757634	8757734	395133	0	-	0.29	[0,0.29]	chr1	45073	39	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	2.7709	4.1793499999999995	5.5878	0.0158484	0.0128957	0.088817	0.0773953
chr7	100345968	100346068	3429878	0	+	0.51	(0.485,0.523]	chr7	331782	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	STAG3L5P:STAG3L5P-PVRIG2P-PILRB	ENSG00000242294.6:ENSG00000272752.6	ENST00000473757.5:ENST00000470714.5:ENST00000310771.8:ENST00000483329.6:ENST00000444874.5:ENST00000488972.6:ENST00000493499.1	lncRNA	retained_intron	lncRNA:transcribed_unprocessed_pseudogene	retained_intron:lncRNA:processed_transcript	3	97	2	2.28384	4.1791350000000005	6.07443	0.031367	0.00899749	0.127822	0.0637469
chr15	24986500	24986599	6063710	0	+	0.343434	(0.33,0.36]	chr15	595387	42	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	3	227	2	3.82032	4.1791	4.53788	0.00385065	0.00138371	0.0400698	0.0178815
chr1	213991079	213991178	339386	0	+	0.373737	(0.36,0.39]	chr1	38089	9	INTRON	INTRON	PROX1	ENSG00000117707.16	ENST00000471129.1:ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2:ENST00000607425.1	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	3.30849	4.17899	5.04949	0.0563927	0.0148029	0.154188	0.0847481
chr18	54211431	54211530	7167901	0	-	0.444444	(0.419,0.45]	chr18	728580	59	INTRON	INTRON	MBD2	ENSG00000134046.12	ENST00000256429.8:ENST00000398398.6:ENST00000583046.1	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	2.7644	4.178775	5.59315	0.0447981	0.029494	0.154539	0.116079
chr22	29020717	29020817	7706653	0	+	0.45	(0.419,0.45]	chr22	806337	22	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7:ENST00000402174.5:ENST00000406323.3	protein_coding	protein_coding	protein_coding	protein_coding	2	180	2	4.11356	4.17814	4.24272	0.0102332	0.00171002	0.0684871	0.0206538
chr22	32819895	32819995	7717808	0	+	0.45	(0.419,0.45]	chr22	807776	174	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	1	88	2	3.37525	4.177895	4.98054	0.0333115	0.0154548	0.123922	0.0869771
chr2	54579876	54579976	799513	0	+	0.46	(0.45,0.485]	chr2	90800	206	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7:ENST00000333896.5	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.34686	4.177725	5.00859	0.052901	0.0124121	0.14912	0.0765738
chr12	6997360	6997428	5166844	0	+	0.441176	(0.419,0.45]	chr12	502747	3	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EMG1:C1S	ENSG00000126749.16:ENSG00000182326.16	ENST00000607161.5:ENST00000406697.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	64	2	2.8723	4.1777	5.4831	0.0367198	0.0345118	0.139793	0.126025
chr14	103109930	103110030	5921926	0	+	0.61	(0.58,1]	chr14	579242	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5:ENST00000560304.1:ENST00000559693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	3.09402	4.1777	5.26138	0.021217	0.0174733	0.0996078	0.0928044
chr5	1103903	1104002	2608890	0	-	0.676768	(0.58,1]	chr5	259667	93	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.09402	4.1777	5.26138	0.021217	0.0174733	0.0996078	0.0928044
chr20	38997660	38997759	7477990	0	+	0.545455	(0.523,0.58]	chr20	778747	24	INTRON	INTRON	DHX35	ENSG00000101452.15	ENST00000373325.6:ENST00000252011.8:ENST00000373323.8:ENST00000652169.1:ENST00000484417.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	216	2	3.79284	4.17729	4.56174	0.00322317	0.00120682	0.0362983	0.0162041
chr1	204082277	204082377	322142	0	+	0.64	(0.58,1]	chr1	36272	37	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1:ENST00000528591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	184	2	3.95805	4.177245	4.39644	0.00271982	5.0401e-4	0.0331692	0.00880724
chr7	47360098	47360197	3587392	0	-	0.454545	(0.45,0.485]	chr7	346030	134	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	2.92826	4.177065	5.42587	0.0301249	0.0290571	0.126768	0.116079
chr9	135835567	135835667	4431102	0	-	0.48	(0.45,0.485]	chr9	423507	76	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	2.92826	4.177065	5.42587	0.0301249	0.0290571	0.126768	0.116079
chr18	80149472	80149571	7101500	0	+	0.363636	(0.36,0.39]	chr18	723199	3	INTRON	INTRON	PARD6G-AS1	ENSG00000267270.7	ENST00000587254.5:ENST00000586421.1:ENST00000589574.1:ENST00000585422.1:ENST00000662611.1	lncRNA	lncRNA	lncRNA	lncRNA	1	76	2	2.55061	4.17697	5.80333	0.10062	0.00231859	0.196131	0.0255753
chr5	176588134	176588233	2596936	0	+	0.535354	(0.523,0.58]	chr5	257747	9	INTRON	INTRON	CDHR2	ENSG00000074276.11	ENST00000510636.5:ENST00000261944.10:ENST00000506348.1:ENST00000513031.5:ENST00000508085.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	59	2	3.18279	4.17624	5.16969	0.0387762	0.0168396	0.131324	0.0919482
chr10	45855694	45855794	4678126	0	-	0.38	(0.36,0.39]	chr10	446183	4	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000610690.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	1	65	2	3.52669	4.1762049999999995	4.82572	0.0751666	0.00914333	0.172839	0.063297
chr16	29271713	29271813	6433554	0	+	0.52	(0.485,0.523]	chr16	636745	196	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	3	222	2	3.6547	4.1762049999999995	4.69771	0.00245888	0.00181524	0.0312881	0.0215865
chr16	87745410	87745509	6656537	0	-	0.565657	(0.523,0.58]	chr16	665900	25	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	3.13506	4.176165	5.21727	0.0361597	0.0186841	0.127853	0.0976296
chr10	34413102	34413202	4667781	0	-	0.34	(0.33,0.36]	chr10	445507	108	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6:ENST00000544292.5	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	3.45733	4.176005	4.89468	0.0629186	0.0102015	0.160778	0.0678072
chr10	103692028	103692128	4757016	0	-	0.56	(0.523,0.58]	chr10	454779	140	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	74	2	3.04682	4.175985	5.30515	0.0459721	0.00509102	0.142664	0.0433513
chr19	18840480	18840580	7224779	0	+	0.55	(0.523,0.58]	chr19	739340	68	INTRON	INTRON	UPF1	ENSG00000005007.13	ENST00000262803.10:ENST00000599848.5:ENST00000601981.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	74	2	3.04682	4.175985	5.30515	0.0459721	0.00509102	0.142664	0.0433513
chr17	6692943	6693043	6845999	0	-	0.58	(0.523,0.58]	chr17	693298	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SLC13A5	ENSG00000141485.17	ENST00000433363.7:ENST00000293800.10:ENST00000381074.8:ENST00000573648.5:ENST00000572727.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	89	2	3.66398	4.175915	4.68785	0.0194172	0.0167995	0.0994526	0.0884836
chr13	33634705	33634803	5688921	0	-	0.44898	(0.419,0.45]	chr13	558273	20	EXON_LNCRNA	EXON_LNCRNA:INTRON	ENSG00000230490	ENSG00000230490.4	ENST00000686875.1:ENST00000454681.2:ENST00000655117.2:ENST00000690486.1:ENST00000654283.1:ENST00000653421.1	lncRNA	lncRNA	lncRNA	lncRNA	2	88	2	3.02953	4.17574	5.32195	0.0431627	0.0111596	0.138403	0.071709
chr3	170123343	170123443	1953945	0	-	0.35	(0.33,0.36]	chr3	198672	2	INTRON	INTRON	PHC3	ENSG00000173889.16	ENST00000495893.7:ENST00000494943.5:ENST00000467570.5:ENST00000486042.1	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.34409	4.175255	5.00642	0.0542065	0.0131368	0.151733	0.0788915
chr6	2025441	2025541	3083133	0	-	0.35	(0.33,0.36]	chr6	299499	641	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000530459.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	3.34409	4.175255	5.00642	0.0542065	0.0131368	0.151733	0.0788915
chr8	102372215	102372314	4031784	0	-	0.353535	(0.33,0.36]	chr8	385211	102	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.34409	4.175255	5.00642	0.0542065	0.0131368	0.151733	0.0788915
chr8	22374530	22374630	3770093	0	+	0.57	(0.523,0.58]	chr8	362721	64	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	15	694	2	3.32204	4.175215	5.02839	5.17873e-4	5.1108e-4	0.0131326	0.00897571
chr21	45434143	45434243	7630604	0	+	0.6	(0.58,1]	chr21	797656	283	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	2	137	2	3.79598	4.17501	4.55404	0.00940557	3.19972e-4	0.0653252	0.00635576
chr16	78989911	78990011	6504318	0	+	0.56	(0.523,0.58]	chr16	645717	2096	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	59	2	3.229	4.1747499999999995	5.1205	0.0416463	0.0152072	0.136301	0.0861813
chr5	177089857	177089940	2597788	0	+	0.60241	(0.58,1]	chr5	257899	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FGFR4	ENSG00000160867.15	ENST00000393648.6:ENST00000503708.5:ENST00000502906.5:ENST00000514472.1:ENST00000292408.9:ENST00000507708.1:ENST00000510911.5:ENST00000513166.1:ENST00000393637.5:ENST00000430285.5:ENST00000426612.5:ENST00000509511.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	251	2	3.78099	4.1746099999999995	4.56823	0.00187326	2.6366e-4	0.0270616	0.00554202
chr19	944912	945012	7185295	0	+	0.65	(0.58,1]	chr19	730741	118	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	248	2	3.75306	4.174585	4.59611	0.00418391	6.25624e-5	0.0419889	0.00192791
chr20	35552375	35552475	7464560	0	+	0.53	(0.523,0.58]	chr20	777291	27	INTRON	INTRON	ERGIC3	ENSG00000125991.21	ENST00000357394.8:ENST00000348547.7:ENST00000416206.5:ENST00000413587.5:ENST00000496172.5:ENST00000482338.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	59	2	3.08569	4.174505	5.26332	0.0337698	0.020773	0.124319	0.102713
chr13	75369513	75369613	5726876	0	-	0.32	(0.29,0.33]	chr13	561710	26	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	2.95538	4.17436	5.39334	0.0510239	0.00448059	0.148503	0.0398484
chr2	235503741	235503841	1062633	0	+	0.5	(0.485,0.523]	chr2	115651	85	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	106	2	2.81552	4.1743	5.53308	0.0344821	0.00304306	0.126025	0.0306636
chr9	124492729	124492829	4402651	0	-	0.69	(0.58,1]	chr9	419812	3	SS5_PROX	SS5_PROX:INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	2	137	2	3.75278	4.17353	4.59428	0.01024	2.81862e-4	0.0684871	0.00579621
chr10	42593010	42593109	4674946	0	-	0.424242	(0.419,0.45]	chr10	445874	4	CDS	CDS:EXON_MRNA:INTRON	ZNF33B	ENSG00000196693.15	ENST00000462075.1:ENST00000486187.5:ENST00000465206.5:ENST00000613419.4:ENST00000359467.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	66	2	3.52905	4.172879999999999	4.81671	0.08258	0.00949141	0.179396	0.0650078
chr20	58696986	58697086	7498653	0	+	0.61	(0.58,1]	chr20	782002	20	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	55	2	3.39676	4.17279	4.94882	0.0354433	0.0085026	0.127188	0.0608246
chr12	51171900	51172000	5429118	0	-	0.43	(0.419,0.45]	chr12	532859	2	SS5_PROX	SS5_PROX:INTRON	TFCP2	ENSG00000135457.11	ENST00000257915.10:ENST00000685804.1:ENST00000549867.5:ENST00000548115.5:ENST00000548108.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	63	2	3.11129	4.17268	5.23407	0.0486006	0.023073	0.145074	0.109758
chr19	37219175	37219275	7252065	0	+	0.44	(0.419,0.45]	chr19	743298	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZNF383	ENSG00000188283.12	ENST00000586068.5:ENST00000585441.5:ENST00000586658.1:ENST00000590503.5:ENST00000684119.1:ENST00000589413.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	63	2	3.11129	4.17268	5.23407	0.0486006	0.023073	0.145074	0.109758
chr16	87477695	87477795	6655872	0	-	0.62	(0.58,1]	chr16	665821	172	INTRON	INTRON	ZCCHC14	ENSG00000140948.13	ENST00000268616.9:ENST00000671377.2:ENST00000568020.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	70	2	3.3216	4.17237	5.02314	0.0230709	0.00638322	0.102982	0.0501889
chr12	132546506	132546606	5353081	0	+	0.72	(0.58,1]	chr12	523670	182	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.03676	4.172115	5.30747	0.0198789	0.0196049	0.100864	0.0955413
chr2	65369133	65369233	1171542	0	-	0.37	(0.36,0.39]	chr2	127560	25	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000452315.5:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	3.34723	4.171975	4.99672	0.0604395	0.0136148	0.158506	0.0811697
chr2	215432643	215432733	1368642	0	-	0.311111	(0.29,0.33]	chr2	145798	3	INTRON	INTRON	FN1	ENSG00000115414.21	ENST00000421182.5:ENST00000323926.10:ENST00000336916.8:ENST00000357867.8:ENST00000359671.5:ENST00000443816.5:ENST00000446046.5:ENST00000354785.11:ENST00000432072.6:ENST00000356005.8:ENST00000426059.1	protein_coding	protein_coding	protein_coding	protein_coding	4	110	2	2.23691	4.171915	6.10692	0.0269259	0.00765507	0.119301	0.0582978
chr3	37863477	37863577	1443278	0	+	0.54	(0.523,0.58]	chr3	153956	8	INTRON	INTRON	CTDSPL	ENSG00000144677.15	ENST00000273179.10:ENST00000443503.6:ENST00000435525.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	80	2	2.52319	4.17179	5.82039	0.0287266	0.0139724	0.123764	0.0805959
chr13	113615532	113615631	5659156	0	+	0.565657	(0.523,0.58]	chr13	555781	41	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	63	2	3.69181	4.17169	4.65157	0.0787008	0.00510333	0.175203	0.0433857
chr16	16157462	16157562	6556429	0	-	0.53	(0.523,0.58]	chr16	653061	4	SS5_PROX	SS5_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	59	2	3.27377	4.17167	5.06957	0.0448011	0.0137592	0.140478	0.0814923
chr2	3289712	3289812	1081004	0	-	0.56	(0.523,0.58]	chr2	117633	70	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	59	2	3.27377	4.17167	5.06957	0.0448011	0.0137592	0.140478	0.0814923
chr4	185212452	185212551	2171017	0	+	0.454545	(0.45,0.485]	chr4	219941	18	INTRON	INTRON	SNX25	ENSG00000109762.17	ENST00000504273.5:ENST00000618785.4:ENST00000652585.2:ENST00000264694.13:ENST00000506896.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	65	2	2.5616	4.17128	5.78096	0.0598406	0.0166968	0.177269	0.0884836
chr11	12814523	12814622	4803047	0	+	0.525253	(0.523,0.58]	chr11	460563	497	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.03457	4.17126	5.30795	0.0315825	0.0231444	0.120781	0.109883
chr16	57185444	57185544	6596209	0	-	0.56	(0.523,0.58]	chr16	659474	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PSME3IP1	ENSG00000172775.17	ENST00000309137.13:ENST00000566077.5:ENST00000567439.5:ENST00000564108.5:ENST00000562324.5:ENST00000567044.5:ENST00000565458.5:ENST00000562406.5:ENST00000566584.5:ENST00000568671.5:ENST00000565760.5:ENST00000566481.5:ENST00000570184.1:ENST00000566681.1:ENST00000565353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	3.03457	4.17126	5.30795	0.0315825	0.0231444	0.120781	0.109883
chr19	45043092	45043191	7270038	0	+	0.373737	(0.36,0.39]	chr19	746627	24	INTRON	INTRON	CLASRP	ENSG00000104859.15	ENST00000221455.8:ENST00000391953.8:ENST00000591410.5:ENST00000592056.5:ENST00000391952.7:ENST00000588936.5:ENST00000544944.6:ENST00000587112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	63	2	2.85025	4.171245	5.49224	0.0373341	0.0304242	0.139793	0.11845
chr9	91420553	91420653	4334184	0	-	0.53	(0.523,0.58]	chr9	414047	93	INTRON	INTRON	NFIL3	ENSG00000165030.4	ENST00000297689.4	protein_coding	protein_coding	protein_coding	protein_coding	2	98	2	2.27461	4.17104	6.06747	0.0797024	7.30845e-4	0.176933	0.0113963
chr9	34399799	34399896	4296605	0	-	0.587629	(0.58,1]	chr9	410635	16	UTR3	UTR3:EXON_MRNA:INTRON	FAM219A	ENSG00000164970.15	ENST00000651358.1:ENST00000379080.5:ENST00000379081.5:ENST00000379084.5:ENST00000379087.5:ENST00000379089.5:ENST00000445726.5:ENST00000297620.8	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.71042	4.1708	5.63118	0.0396128	0.0109983	0.143388	0.0708586
chr14	104875755	104875855	5925969	0	+	0.66	(0.58,1]	chr14	579943	1	SS3_PROX	SS3_PROX:INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	2	78	2	3.33506	4.170455	5.00585	0.0323732	0.00321851	0.121593	0.0319521
chr2	239277180	239277280	1391480	0	-	0.51	(0.485,0.523]	chr2	148740	256	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	72	2	2.85123	4.170445	5.48966	0.0614408	0.0033837199999999998	0.158506	0.0328791
chr6	158019291	158019391	3059685	0	+	0.59	(0.58,1]	chr6	297373	11	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	3	88	2	2.6736	4.17029	5.66698	0.0105869	0.0102927	0.0694649	0.0684871
chr7	73599895	73599995	3602856	0	-	0.65	(0.58,1]	chr7	347633	2	SS3_PROX	SS3_PROX:INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1:ENST00000488212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	73	2	2.74604	4.170255	5.59447	0.015009	0.0117666	0.0852854	0.0737098
chr8	47448740	47448840	3814113	0	+	0.48	(0.45,0.485]	chr8	367313	78	INTRON	INTRON	SPIDR	ENSG00000164808.17	ENST00000541342.2:ENST00000518074.5:ENST00000297423.9:ENST00000521550.5:ENST00000524126.5:ENST00000524141.5:ENST00000519661.5:ENST00000522117.5:ENST00000524033.5:ENST00000524006.5:ENST00000521214.5:ENST00000519401.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	61	2	3.38668	4.17024	4.9538	0.0569772	0.0113463	0.154343	0.0719708
chr12	110378719	110378805	5496412	0	-	0.430233	(0.419,0.45]	chr12	540887	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	ANAPC7	ENSG00000196510.14	ENST00000455511.9:ENST00000481473.5:ENST00000552087.1:ENST00000450008.3:ENST00000471602.6:ENST00000548234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	95	2	3.35274	4.170204999999999	4.98767	0.0669167	0.00522519	0.16272	0.0442559
chr9	134337139	134337238	4260794	0	+	0.575758	(0.523,0.58]	chr9	406311	101	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	62	2	2.68276	4.1701250000000005	5.65749	0.0464998	0.0182707	0.156036	0.0921579
chr2	238448786	238448885	1074173	0	+	0.565657	(0.523,0.58]	chr2	116452	24	UTR3	UTR3:EXON_MRNA:INTRON	ASB1	ENSG00000065802.12	ENST00000264607.9:ENST00000481566.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	79	2	2.75313	4.169965	5.5868	0.020474	0.0173428	0.0979776	0.0927775
chr12	2961052	2961152	5157694	0	+	0.53	(0.523,0.58]	chr12	501258	3	INTRON	INTRON	TEAD4	ENSG00000197905.10	ENST00000358409.7:ENST00000359864.8:ENST00000540314.2:ENST00000536826.2:ENST00000543035.6:ENST00000397122.6:ENST00000443986.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	79	2	2.71726	4.16992	5.62258	0.0193313	0.0188054	0.0980631	0.0954446
chr14	89200039	89200139	6026095	0	-	0.37	(0.36,0.39]	chr14	591423	92	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000555010.1:ENST00000557718.5:ENST00000553353.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	62	2	3.05132	4.16955	5.28778	0.0407706	0.0252548	0.135868	0.114966
chr19	58194134	58194234	7299999	0	+	0.49	(0.485,0.523]	chr19	751888	67	INTRON	INTRON	ZNF274	ENSG00000171606.18	ENST00000424679.6:ENST00000617501.5:ENST00000621145.4:ENST00000345813.7:ENST00000619307.4:ENST00000615675.4:ENST00000326804.8:ENST00000610905.4:ENST00000594839.5:ENST00000601995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	59	2	3.21778	4.16935	5.12092	0.0414411	0.0157761	0.136301	0.0884237
chr16	85452309	85452409	6517594	0	+	0.64	(0.58,1]	chr16	646391	930	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	2.78186	4.169335	5.55681	0.0342923	0.0126042	0.13449	0.0761905
chr1	204224684	204224784	645029	0	-	0.44	(0.419,0.45]	chr1	76439	7	INTRON	INTRON	PLEKHA6	ENSG00000143850.16	ENST00000272203.8:ENST00000637508.1:ENST00000414478.1	protein_coding	protein_coding	protein_coding	protein_coding	2	86	2	2.89397	4.16922	5.44447	0.0364384	0.0151064	0.128173	0.085778
chr10	75728846	75728946	4523452	0	+	0.62	(0.58,1]	chr10	432271	809	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	502	2	3.12709	4.16901	5.21093	0.00567296	3.05419e-6	0.0496157	2.2292e-4
chr9	100079427	100079527	4360046	0	-	0.46	(0.45,0.485]	chr9	416037	189	INTRON	INTRON	ERP44	ENSG00000023318.9	ENST00000262455.7:ENST00000685319.1:ENST00000691188.1:ENST00000687025.1:ENST00000687093.1:ENST00000690739.1:ENST00000687017.1:ENST00000690317.1:ENST00000691823.1:ENST00000686275.1:ENST00000689406.1:ENST00000684842.1:ENST00000688230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	82	2	2.46542	4.168925	5.87243	0.0337868	0.0143887	0.133182	0.0821732
chr18	12597208	12597308	7122264	0	-	0.42	(0.419,0.45]	chr18	724805	84	INTRON	INTRON	SPIRE1	ENSG00000134278.16	ENST00000409402.9:ENST00000410092.7:ENST00000309836.9:ENST00000440472.6:ENST00000453447.6:ENST00000449797.5:ENST00000497844.6:ENST00000462226.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	65	2	3.46155	4.1687650000000005	4.87598	0.0768574	0.0110249	0.174882	0.0711736
chr14	23308965	23309060	5756458	0	+	0.589474	(0.58,1]	chr14	564868	1	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BCL2L2:BCL2L2-PABPN1	ENSG00000129473.11:ENSG00000258643.6	ENST00000679219.1:ENST00000678311.1:ENST00000678502.1:ENST00000250405.10:ENST00000557579.2:ENST00000553781.5:ENST00000679000.1:ENST00000556100.3:ENST00000557008.2:ENST00000556599.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	123	2	1.85501	4.16868	6.48235	0.0390895	0.00202884	0.142605	0.0283135
chr2	71347327	71347426	829020	0	+	0.40404	(0.39,0.419]	chr2	93515	51	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000494621.5:ENST00000410075.5:ENST00000466975.5:ENST00000466330.5:ENST00000437658.2:ENST00000464375.5:ENST00000475743.1:ENST00000409544.5:ENST00000455226.5:ENST00000454278.5:ENST00000264447.9:ENST00000454122.1:ENST00000417778.5:ENST00000487707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	2.7362	4.168575000000001	5.60095	0.0461646	0.0263614	0.155334	0.110638
chr8	9772923	9773020	3754907	0	+	0.340206	(0.33,0.36]	chr8	360888	1	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	2	185	2	3.80984	4.168565	4.52729	0.0044449	0.00392757	0.0405202	0.0396254
chr7	96164627	96164727	3641926	0	-	0.34	(0.33,0.36]	chr7	350666	176	INTRON	INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000490072.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	61	2	3.1778	4.168555	5.15931	0.043896	0.0187975	0.139792	0.0980631
chr2	239338890	239338990	1392099	0	-	0.46	(0.45,0.485]	chr2	148752	144	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	60	2	3.1756	4.168545	5.16149	0.0427653	0.0180699	0.13762	0.0953579
chr7	47480402	47480502	3588612	0	-	0.47	(0.45,0.485]	chr7	346123	273	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.1756	4.168545	5.16149	0.0427653	0.0180699	0.13762	0.0953579
chr16	72055972	72056066	6491131	0	+	0.478723	(0.45,0.485]	chr16	645056	15	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HP	ENSG00000257017.10	ENST00000355906.10:ENST00000570083.5:ENST00000398131.6:ENST00000569639.5:ENST00000562488.5:ENST00000565807.6:ENST00000562526.5:ENST00000566821.1:ENST00000357763.8:ENST00000564499.5:ENST00000565574.5:ENST00000568417.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	66	2	3.76457	4.168535	4.5725	0.0926859	0.00463252	0.188571	0.0408278
chr22	24102211	24102306	7695384	0	+	0.536842	(0.523,0.58]	chr22	805522	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	CABIN1:ENSG00000232545	ENSG00000099991.18:ENSG00000232545.1	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1:ENST00000444093.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	1	64	2	3.75634	4.16846	4.58058	0.0860403	0.00434055	0.181766	0.0390182
chr12	132793562	132793660	5540397	0	-	0.734694	(0.58,1]	chr12	546816	19	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	223	2	3.53864	4.168355	4.79807	0.0011255	9.05764e-4	0.0202727	0.0132726
chr10	103810750	103810850	4758212	0	-	0.49	(0.485,0.523]	chr10	454819	90	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	2	166	2	4.03042	4.167645	4.30487	0.0052416	0.00217615	0.0476984	0.0243911
chr8	9771315	9771407	3754889	0	+	0.554348	(0.523,0.58]	chr8	360881	7	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	2.74768	4.16724	5.5868	0.0411359	0.020474	0.147756	0.0979776
chr16	85385238	85385338	6516923	0	+	0.65	(0.58,1]	chr16	646391	259	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	76	2	3.59052	4.16699	4.74346	0.014012	0.0121457	0.0807513	0.0754623
chr13	51403899	51403999	5715436	0	-	0.54	(0.523,0.58]	chr13	560749	7	INTRON	INTRON	INTS6	ENSG00000102786.15	ENST00000398119.6:ENST00000311234.9:ENST00000469430.5:ENST00000497989.5:ENST00000486195.6:ENST00000491189.5:ENST00000466784.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	72	2	2.48975	4.16674	5.84373	0.101574	0.00133116	0.196431	0.0173248
chr21	45456981	45457081	7630834	0	+	0.68	(0.58,1]	chr21	797661	1	SS5_PROX	SS5_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	2.87471	4.166715	5.45872	0.0495478	0.00211999	0.146562	0.0239744
chr20	43527559	43527658	7480794	0	+	0.535354	(0.523,0.58]	chr20	779295	85	INTRON	INTRON	L3MBTL1	ENSG00000185513.17	ENST00000649501.1:ENST00000439769.2:ENST00000649084.1:ENST00000418998.7:ENST00000427442.8:ENST00000649917.1:ENST00000647860.1:ENST00000649698.1:ENST00000422861.3:ENST00000473289.2:ENST00000648786.1:ENST00000648715.1:ENST00000648570.1:ENST00000650071.1:ENST00000650484.1:ENST00000648421.1:ENST00000373135.8:ENST00000373134.5:ENST00000457824.5:ENST00000473981.2:ENST00000647827.1:ENST00000445228.6:ENST00000648774.1:ENST00000497347.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	2.98158	4.16641	5.35124	0.0295772	0.0258432	0.116361	0.116079
chr5	38815810	38815909	2643146	0	-	0.353535	(0.33,0.36]	chr5	262449	31	INTRON	INTRON	OSMR-DT	ENSG00000249740.4	ENST00000662290.1:ENST00000636516.2:ENST00000685305.1:ENST00000513480.1:ENST00000688648.1	lncRNA	lncRNA	lncRNA	lncRNA	1	62	2	2.83079	4.16641	5.50203	0.0376711	0.0265895	0.140049	0.111433
chr21	43059564	43059651	7675855	0	-	0.586207	(0.58,1]	chr21	802386	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CBS	ENSG00000160200.18	ENST00000352178.9:ENST00000359624.7:ENST00000398165.8:ENST00000398158.5:ENST00000461686.5:ENST00000462349.5:ENST00000491776.1:ENST00000430013.1:ENST00000496485.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	164	2	2.91446	4.166370000000001	5.41828	0.0464528	1.82418e-5	0.143232	7.88986e-4
chr2	200394370	200394470	986845	0	+	0.46	(0.45,0.485]	chr2	108327	7	INTRON	INTRON	SPATS2L	ENSG00000196141.14	ENST00000439084.5:ENST00000409718.5:ENST00000358677.9:ENST00000409988.7:ENST00000409385.5:ENST00000439395.5:ENST00000444012.5:ENST00000451764.6:ENST00000360760.9:ENST00000423749.5:ENST00000457757.5:ENST00000453663.5:ENST00000409140.8:ENST00000409397.6:ENST00000619961.4:ENST00000409151.5:ENST00000421573.5:ENST00000449647.5:ENST00000438761.5	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.22036	4.16633	5.1123	0.0458344	0.016408	0.142336	0.0911382
chr6	2162231	2162331	3084504	0	-	0.49	(0.485,0.523]	chr6	299521	371	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.26255	4.16627	5.06999	0.0445854	0.0142848	0.140478	0.0833845
chr9	123257245	123257345	4396235	0	-	0.41	(0.39,0.419]	chr9	419553	199	INTRON	INTRON	STRBP	ENSG00000165209.19	ENST00000348403.10:ENST00000360998.3:ENST00000407982.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	62	2	3.18369	4.16596	5.14823	0.0501234	0.0193131	0.147892	0.0994526
chr21	42843093	42843187	7675402	0	-	0.414894	(0.39,0.419]	chr21	802284	1	UTR3	UTR3:EXON_MRNA	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.77224	4.1658349999999995	4.55943	0.104562	0.00517927	0.19835	0.043878
chr6	167892396	167892493	3074003	0	+	0.257732	[0,0.29]	chr6	298836	10	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	96	2	2.82215	4.1657150000000005	5.50928	0.0276585	0.00267774	0.112851	0.0282006
chr1	174274713	174274810	279140	0	+	0.350515	(0.33,0.36]	chr1	32678	19	INTRON	INTRON	RABGAP1L	ENSG00000152061.24	ENST00000357444.10:ENST00000251507.8:ENST00000681986.1:ENST00000457696.1	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.22121	4.165665000000001	5.11012	0.04702	0.0171454	0.143232	0.0923809
chr9	134340632	134340732	4260829	0	+	0.61	(0.58,1]	chr9	406311	136	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	74	2	2.52834	4.16512	5.8019	0.0249502	0.007984	0.114418	0.0596361
chr7	74364515	74364615	3390934	0	+	0.68	(0.58,1]	chr7	327281	2	SS5_PROX	SS5_PROX:INTRON	CLIP2	ENSG00000106665.16	ENST00000223398.11:ENST00000361545.9	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	2.66286	4.1649199999999995	5.66698	0.0183006	0.0102927	0.0958973	0.0684871
chr6	350033	350132	2824335	0	+	0.353535	(0.33,0.36]	chr6	277235	12	UTR3	UTR3:EXON_MRNA:INTRON	DUSP22	ENSG00000112679.15	ENST00000344450.9:ENST00000419235.7:ENST00000603726.5:ENST00000604971.5:ENST00000604988.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	63	2	3.49318	4.16428	4.83538	0.0679743	0.00940277	0.164413	0.0648045
chr2	134451933	134452032	898767	0	+	0.353535	(0.33,0.36]	chr2	101298	32	UTR3	UTR3:EXON_MRNA	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	8	404	2	3.53956	4.164205	4.78885	0.0023955	5.95135e-4	0.0309227	0.00989413
chr1	48228053	48228151	120980	0	+	0.428571	(0.419,0.45]	chr1	15165	29	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	63	2	2.92337	4.16407	5.40477	0.0385125	0.0333415	0.133139	0.131324
chr10	75692967	75693067	4523093	0	+	0.51	(0.485,0.523]	chr10	432271	450	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	109	2	2.33315	4.163945	5.99474	0.0213218	0.0103305	0.104644	0.0684871
chr9	14802968	14803067	4279736	0	-	0.424242	(0.419,0.45]	chr9	408919	7	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	79	2	2.97363	4.1634	5.35317	0.0596114	0.00714797	0.157889	0.0541241
chr20	41559128	41559228	7564229	0	-	0.43	(0.419,0.45]	chr20	790090	74	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	388	2	4.13848	4.16305	4.18762	0.00423464	3.66369e-4	0.0422099	0.00701039
chr20	33547746	33547846	7458122	0	+	0.35	(0.33,0.36]	chr20	776442	571	INTRON	INTRON	CBFA2T2	ENSG00000078699.22	ENST00000471007.1:ENST00000342704.11:ENST00000375279.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	74	2	2.8623	4.1629249999999995	5.46355	0.0634783	0.00462971	0.161669	0.0408278
chr17	55287889	55287987	6757341	0	+	0.336735	(0.33,0.36]	chr17	681712	35	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000572234.2:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	99	2	2.54645	4.162599999999999	5.77875	0.019106	0.0172683	0.0994227	0.0897247
chr3	150760237	150760337	1943844	0	-	0.47	(0.45,0.485]	chr3	197663	172	INTRON	INTRON	SIAH2	ENSG00000181788.4	ENST00000312960.4:ENST00000482706.1	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.26377	4.162575	5.06138	0.0492008	0.0149252	0.146142	0.0848525
chr22	19423220	19423320	7763488	0	-	0.5	(0.485,0.523]	chr22	813787	121	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	161	2	3.4264	4.1625250000000005	4.89865	0.025039	1.85073e-4	0.10758	0.00428663
chr1	161214193	161214272	253767	0	+	0.56962	(0.523,0.58]	chr1	30238	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	NDUFS2	ENSG00000158864.13	ENST00000677550.1:ENST00000676600.1:ENST00000676653.1:ENST00000678507.1:ENST00000678492.1:ENST00000677846.1:ENST00000677807.1:ENST00000677809.1:ENST00000678966.1:ENST00000678911.1:ENST00000678605.1:ENST00000677350.1:ENST00000677081.1:ENST00000679282.1:ENST00000677925.1:ENST00000676535.1:ENST00000677547.1:ENST00000678613.1:ENST00000677231.1:ENST00000677613.1:ENST00000677138.1:ENST00000677457.1:ENST00000678052.1:ENST00000677178.1:ENST00000679215.1:ENST00000678793.1:ENST00000679064.1:ENST00000677383.1:ENST00000677579.1:ENST00000679176.1:ENST00000367993.7:ENST00000676991.1:ENST00000678130.1:ENST00000496553.6:ENST00000467295.6:ENST00000392179.5:ENST00000678511.1:ENST00000677453.1:ENST00000677577.1:ENST00000678850.1:ENST00000677653.1:ENST00000678783.1:ENST00000676871.1:ENST00000677050.1:ENST00000676726.1:ENST00000677916.1:ENST00000677495.1:ENST00000678484.1:ENST00000679239.1:ENST00000677657.1:ENST00000493849.6:ENST00000676583.1:ENST00000678328.1:ENST00000677736.1:ENST00000677045.1:ENST00000677063.1:ENST00000678982.1:ENST00000677471.1:ENST00000677948.1:ENST00000677336.1:ENST00000677643.1:ENST00000678648.1:ENST00000677358.1:ENST00000677089.1:ENST00000480762.6:ENST00000678532.1:ENST00000677745.1:ENST00000678880.1:ENST00000679169.1:ENST00000677837.1:ENST00000676972.1:ENST00000678068.1:ENST00000676795.1:ENST00000678559.1:ENST00000677103.1:ENST00000679142.1:ENST00000676770.1:ENST00000677033.1:ENST00000679071.1:ENST00000678356.1:ENST00000465923.6:ENST00000483804.6:ENST00000468828.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	311	2	3.0604	4.16247	5.26454	0.00336839	7.93867e-4	0.0328791	0.016765
chr17	80822652	80822726	6811690	0	+	0.391892	(0.39,0.419]	chr17	687860	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000570891.5:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	62	2	3.22582	4.16244	5.09906	0.0535378	0.0176855	0.150319	0.093839
chr14	20687789	20687886	5755018	0	+	0.484536	(0.45,0.485]	chr14	564397	27	INTRON	INTRON	ANG:RNASE4:ENSG00000259171	ENSG00000214274.10:ENSG00000258818.4:ENSG00000259171.1	ENST00000336811.10:ENST00000555835.3:ENST00000397995.2:ENST00000553909.1:ENST00000554073.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	2.98123	4.16212	5.34301	0.0328801	0.0270875	0.122593	0.119337
chr22	32814104	32814204	7717750	0	+	0.41	(0.39,0.419]	chr22	807776	116	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	2.95235	4.1620349999999995	5.37172	0.0367885	0.0307567	0.129052	0.12741
chr1	12584646	12584745	402449	0	-	0.626263	(0.58,1]	chr1	46222	36	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	190	2	3.64784	4.162025	4.67621	0.00147664	0.00130204	0.023604	0.0171306
chr6	158021285	158021385	3059705	0	+	0.43	(0.419,0.45]	chr6	297373	31	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	3	102	2	2.30499	4.161665	6.01834	0.0340794	0.015582500000000001	0.134158	0.0849828
chr20	23634199	23634299	7537524	0	-	0.67	(0.58,1]	chr20	786639	2	SS3_PROX	SS3_PROX:INTRON	CST3	ENSG00000101439.9	ENST00000398411.5:ENST00000398409.1:ENST00000376925.8	protein_coding	protein_coding	protein_coding	protein_coding	4	217	2	3.8583	4.161625	4.46495	0.00234598	3.29831e-4	0.0305046	0.00649325
chr10	112195147	112195247	4760738	0	-	0.48	(0.45,0.485]	chr10	455255	115	INTRON	INTRON	GPAM	ENSG00000119927.14	ENST00000480130.5:ENST00000498541.1	protein_coding	processed_transcript	protein_coding	processed_transcript	4	286	2	3.82567	4.16138	4.49709	0.0135982	8.7936e-5	0.079591	0.00248329
chr10	31862756	31862856	4661172	0	-	0.49	(0.485,0.523]	chr10	444971	7	INTRON	INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9:ENST00000311380.8	protein_coding	protein_coding	protein_coding	protein_coding	2	79	2	2.63059	4.161295	5.692	0.0230209	0.0171772	0.109585	0.0895975
chr5	302179	302279	2377944	0	+	0.56	(0.523,0.58]	chr5	237467	254	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	212	2	3.8269	4.16123	4.49556	0.0036623	0.00109593	0.0389784	0.0151164
chr1	51737560	51737660	123781	0	+	0.31	(0.29,0.33]	chr1	15354	71	INTRON	INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5:ENST00000484890.5:ENST00000532975.5:ENST00000534040.5:ENST00000527631.5:ENST00000531828.5:ENST00000361556.9:ENST00000473207.6:ENST00000533884.5:ENST00000481937.5:ENST00000526917.5:ENST00000462759.5:ENST00000486942.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	3.24556	4.16116	5.07676	0.0412683	0.0151115	0.136301	0.085778
chr11	70748779	70748879	5061769	0	-	0.53	(0.523,0.58]	chr11	492701	309	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	2.80981	4.1611400000000005	5.51247	0.0364868	0.0230387	0.139793	0.102982
chr21	37367728	37367823	7618976	0	+	0.8	(0.58,1]	chr21	796007	1	SS5_PROX	SS5_PROX:INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1	protein_coding	protein_coding	protein_coding	protein_coding	2	88	2	2.35391	4.161025	5.96814	0.0600041	5.06433e-4	0.158506	0.00881473
chr11	70782553	70782653	5062107	0	-	0.53	(0.523,0.58]	chr11	492701	647	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	98	2	2.40998	4.160625	5.91127	0.0653274	0.00111349	0.162385	0.0152496
chr17	4852519	4852618	6672078	0	+	0.535354	(0.523,0.58]	chr17	668609	185	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	73	2	3.01567	4.160410000000001	5.30515	0.0482042	0.00509102	0.144601	0.0433513
chr6	3446112	3446212	3087959	0	-	0.61	(0.58,1]	chr6	299812	12	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000485307.5:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	3.06331	4.16031	5.25731	0.036259	0.00358178	0.127941	0.0342681
chr7	1023504	1023603	3526458	0	-	0.545455	(0.523,0.58]	chr7	340572	130	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	71	2	2.66054	4.1600649999999995	5.65959	0.0806884	0.0021416	0.177452	0.0240825
chr10	47532282	47532382	4680505	0	-	0.54	(0.523,0.58]	chr10	446443	84	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	1	59	2	2.92656	4.159915	5.39327	0.0289226	0.0277354	0.124	0.112851
chr10	79230770	79230870	4533669	0	+	0.56	(0.523,0.58]	chr10	432457	141	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.92656	4.159915	5.39327	0.0289226	0.0277354	0.124	0.112851
chr17	72552735	72552835	6963838	0	-	0.48	(0.45,0.485]	chr17	710389	183	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	3	113	2	3.25802	4.1597	5.06138	0.0492008	0.0031481	0.146142	0.0313422
chr2	222915020	222915120	1038251	0	+	0.28	[0,0.29]	chr2	113229	34	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000542810.1:ENST00000540115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	77	2	2.97387	4.159675	5.34548	0.0197148	0.00975704	0.0958249	0.0664239
chr16	84738036	84738135	6514210	0	+	0.515152	(0.485,0.523]	chr16	646283	42	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	110	2	2.49827	4.15954	5.82081	0.0144721	0.0138807	0.0834029	0.0804838
chr1	226943879	226943979	355631	0	+	0.54	(0.523,0.58]	chr1	40145	29	INTRON	INTRON	COQ8A	ENSG00000163050.18	ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000489044.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	165	2	4.01555	4.159095000000001	4.30264	0.00528859	0.00221587	0.047841	0.0247044
chr17	642100	642200	6823597	0	-	0.43	(0.419,0.45]	chr17	689804	89	INTRON	INTRON	VPS53	ENSG00000141252.21	ENST00000437048.7:ENST00000681160.1:ENST00000680465.1:ENST00000681661.1:ENST00000680872.1:ENST00000681317.1:ENST00000681943.1:ENST00000681510.1:ENST00000680641.1:ENST00000681946.1:ENST00000576149.5:ENST00000681917.1:ENST00000681096.1:ENST00000573028.5:ENST00000571805.6:ENST00000681478.1:ENST00000680128.1:ENST00000291074.10:ENST00000389040.9:ENST00000401468.7:ENST00000680704.1:ENST00000572334.7:ENST00000680069.1:ENST00000680944.1:ENST00000681902.1:ENST00000679361.1:ENST00000681154.1:ENST00000681830.1:ENST00000679959.1:ENST00000680114.1:ENST00000680958.1:ENST00000680274.1:ENST00000681229.1:ENST00000681035.1:ENST00000681133.1:ENST00000570650.2:ENST00000679680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	63	2	3.27753	4.15898	5.04043	0.0625897	0.0163857	0.160305	0.0910838
chr17	29261238	29261338	6877032	0	-	0.29	[0,0.29]	chr17	698041	55	UTR3	UTR3:EXON_MRNA	NUFIP2	ENSG00000108256.9	ENST00000225388.9	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	2.65759	4.158945	5.6603	0.0205378	0.0113106	0.102713	0.0722887
chr8	127849042	127849142	3918333	0	+	0.51	(0.485,0.523]	chr8	374180	24	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000655594.1	lncRNA	lncRNA	lncRNA	lncRNA	3	95	2	2.55961	4.1587250000000004	5.75784	0.0169478	0.0154142	0.0923809	0.0849828
chrX	44898485	44898585	7871926	0	+	0.58	(0.523,0.58]	chrX	825082	241	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	155	2	3.72301	4.15856	4.59411	0.015164	4.40994e-4	0.0844216	0.00800597
chr1	176052012	176052112	622688	0	-	0.38	(0.36,0.39]	chr1	73582	53	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000461830.6:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000459744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	62	2	2.9032	4.15855	5.4139	0.0340874	0.0337607	0.133139	0.125059
chr15	82211516	82211616	6339382	0	-	0.38	(0.36,0.39]	chr15	624925	457	INTRON	INTRON	EFL1	ENSG00000140598.16	ENST00000359445.8:ENST00000696330.1:ENST00000268206.12:ENST00000696336.1:ENST00000650113.1:ENST00000561389.2:ENST00000696337.1:ENST00000696329.1:ENST00000557939.2:ENST00000561331.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	62	2	2.9032	4.15855	5.4139	0.0340874	0.0337607	0.133139	0.125059
chr11	68489473	68489572	4883768	0	+	0.414141	(0.39,0.419]	chr11	470696	283	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	79	2	3.10297	4.158205000000001	5.21344	0.0474927	0.00893514	0.144137	0.0620271
chr11	46722679	46722779	4852137	0	+	0.52	(0.485,0.523]	chr11	464359	1	SS3_PROX	SS3_PROX:INTRON	F2	ENSG00000180210.15	ENST00000311907.10:ENST00000530231.5:ENST00000442468.1	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	2.74113	4.15818	5.57523	0.0719691	0.00274261	0.168159	0.028553
chr1	179225441	179225541	626775	0	-	0.32	(0.29,0.33]	chr1	74001	825	INTRON	INTRON	ABL2	ENSG00000143322.21	ENST00000502732.6:ENST00000367623.8:ENST00000507173.5:ENST00000511413.5:ENST00000668691.1:ENST00000392043.4:ENST00000660584.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	61	2	3.52516	4.158075	4.79099	0.061706	0.0079683	0.158854	0.0579377
chr13	49172196	49172296	5591401	0	+	0.33	(0.29,0.33]	chr13	551157	1	SS5_PROX	SS5_PROX:INTRON	FNDC3A	ENSG00000102531.16	ENST00000492622.6:ENST00000541916.5:ENST00000484074.5:ENST00000398316.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	61	2	3.52516	4.158075	4.79099	0.061706	0.0079683	0.158854	0.0579377
chr17	17728457	17728557	6689320	0	+	0.64	(0.58,1]	chr17	671344	39	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.20215	4.15785	5.11355	0.0271806	0.0136092	0.112113	0.0811697
chr7	221848	221947	3305873	0	+	0.717172	(0.58,1]	chr7	320161	125	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.20215	4.15785	5.11355	0.0271806	0.0136092	0.112113	0.0811697
chr14	89181403	89181500	6025905	0	-	0.43299	(0.419,0.45]	chr14	591409	2	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000556541.1:ENST00000555010.1:ENST00000557496.1:ENST00000557718.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	105	2	2.21108	4.15759	6.1041	0.0977272	0.00123471	0.191848	0.0164614
chr2	101735930	101736030	861015	0	+	0.4	(0.39,0.419]	chr2	97528	370	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.68433	4.15735	4.63037	0.0963077	0.00637588	0.189169	0.0501889
chr19	1168393	1168493	7305736	0	-	0.65	(0.58,1]	chr19	753055	3	SS5_PROX	SS5_PROX:INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5:ENST00000587655.2	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	2.95313	4.15733	5.36153	0.0435972	0.00273899	0.139245	0.028553
chr7	143384745	143384841	3510752	0	+	0.479167	(0.45,0.485]	chr7	338486	1	INTRON	INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	60	2	3.30591	4.1572499999999994	5.00859	0.052901	0.0135996	0.14912	0.0811697
chr6	156968894	156968994	3051376	0	+	0.64	(0.58,1]	chr6	297017	251	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000638000.1:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	54	2	3.25332	4.15701	5.0607	0.029633	0.0120565	0.116079	0.0754623
chr2	3458761	3458861	711020	0	+	0.46	(0.45,0.485]	chr2	83175	3	SS5_PROX	SS5_PROX:INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000479955.5:ENST00000497597.5:ENST00000473348.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	301	2	3.93172	4.157005	4.38229	0.00500791	3.15948e-4	0.0464177	0.00631843
chr10	34642139	34642239	4670075	0	-	0.65	(0.58,1]	chr10	445529	1246	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.1491	4.156815	5.16453	0.0249802	0.0154006	0.10758	0.0869771
chr11	70819763	70819863	5062481	0	-	0.67	(0.58,1]	chr11	492713	122	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	3.1491	4.156815	5.16453	0.0249802	0.0154006	0.10758	0.0869771
chr19	2337950	2338050	7189506	0	+	0.68	(0.58,1]	chr19	731794	1	SS3_ADJ	SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000593243.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	54	2	3.1491	4.156815	5.16453	0.0249802	0.0154006	0.10758	0.0869771
chr21	45454821	45454921	7630811	0	+	0.63	(0.58,1]	chr21	797656	490	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.1491	4.156815	5.16453	0.0249802	0.0154006	0.10758	0.0869771
chr15	98717972	98718072	6194024	0	+	0.46	(0.45,0.485]	chr15	609659	95	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	60	2	2.92826	4.156645	5.38503	0.0308908	0.0301249	0.126768	0.119556
chr9	112221178	112221277	4371109	0	-	0.242424	[0,0.29]	chr9	417672	36	UTR3	UTR3:EXON_MRNA	PTBP3	ENSG00000119314.16	ENST00000334318.10:ENST00000458258.5:ENST00000374257.6	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	2.71826	4.15657	5.59488	0.0648743	0.00215262	0.162218	0.0241612
chr16	53081766	53081866	6454358	0	+	0.33	(0.29,0.33]	chr16	640106	263	INTRON	INTRON	CHD9	ENSG00000177200.18	ENST00000447540.6:ENST00000566029.5:ENST00000615216.4:ENST00000561869.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	3.28897	4.15646	5.02395	0.0445554	0.0137233	0.140478	0.0814223
chr1	144746633	144746733	229978	0	+	0.48	(0.45,0.485]	chr1	25236	74	INTRON	INTRON	LSP1P5	ENSG00000288905.1	ENST00000692403.1:ENST00000692166.1	lncRNA	lncRNA	lncRNA	lncRNA	1	63	2	2.62955	4.1564250000000005	5.6833	0.0530416	0.0195193	0.167062	0.0955413
chr3	128496398	128496498	1563260	0	+	0.81	(0.58,1]	chr3	165332	3	SS3_PROX	SS3_PROX:INTRON	GATA2-AS1	ENSG00000244300.3	ENST00000464242.1:ENST00000468377.1:ENST00000669945.1	lncRNA	lncRNA	lncRNA	lncRNA	2	76	2	3.25213	4.156415	5.0607	0.029633	0.00405239	0.116079	0.0371518
chr16	89913034	89913131	6526306	0	+	0.597938	(0.58,1]	chr16	647713	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TCF25:ENSG00000267048:MC1R	ENSG00000141002.20:ENSG00000267048.1:ENSG00000258839.4	ENST00000640279.1:ENST00000570217.1:ENST00000539976.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay	1	55	2	3.48503	4.156280000000001	4.82753	0.0427798	0.006811	0.13762	0.0524379
chr17	72528727	72528826	6963594	0	-	0.383838	(0.36,0.39]	chr17	710377	18	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	2	88	2	3.16297	4.156275	5.14958	0.0493212	0.00784771	0.146207	0.0575542
chrX	24801991	24802091	7856982	0	+	0.51	(0.485,0.523]	chrX	824101	71	INTRON	INTRON	POLA1	ENSG00000101868.13	ENST00000672178.1:ENST00000379068.8:ENST00000379059.7:ENST00000611764.2:ENST00000480125.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	71	2	2.77877	4.155925	5.53308	0.0682166	0.00304306	0.164526	0.0306636
chr11	70767065	70767165	5061952	0	-	0.51	(0.485,0.523]	chr11	492701	492	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	2.79862	4.15576	5.5129	0.0375966	0.0229047	0.139924	0.102982
chr2	25808035	25808135	1109755	0	-	0.4	(0.39,0.419]	chr2	121025	13	INTRON	INTRON	ASXL2	ENSG00000143970.18	ENST00000435504.9:ENST00000336112.9:ENST00000497092.1	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	2.54293	4.155355	5.76778	0.102111	0.0025422	0.19738	0.0271978
chr17	15493584	15493684	6860372	0	-	0.6	(0.58,1]	chr17	695075	180	INTRON	INTRON	TVP23C-CDRT4:CDRT4	ENSG00000259024.6:ENSG00000239704.11	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	73	2	2.57459	4.155305	5.73602	0.0224622	0.00904546	0.108193	0.0637469
chr15	37099098	37099197	6228421	0	-	0.59596	(0.58,1]	chr15	612881	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	MEIS2	ENSG00000134138.20	ENST00000338564.9:ENST00000561208.6:ENST00000340545.9:ENST00000314177.12:ENST00000560570.5:ENST00000557796.6:ENST00000397620.6:ENST00000424352.6:ENST00000559561.5:ENST00000558313.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	106	2	2.04496	4.1552	6.26544	0.072985	2.06156e-4	0.169793	0.00461335
chr2	240626068	240626165	1075204	0	+	0.659794	(0.58,1]	chr2	116658	1	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2:ENST00000407714.2	protein_coding	protein_coding	protein_coding	protein_coding	2	137	2	4.04904	4.154965	4.26089	0.0056478	7.87512e-4	0.0495171	0.0120243
chr3	58009555	58009655	1483049	0	+	0.57	(0.523,0.58]	chr3	159572	3	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	186	2	3.62427	4.1549499999999995	4.68563	0.0060311	0.00253221	0.0484641	0.0317499
chr20	37507519	37507618	7559843	0	-	0.454545	(0.45,0.485]	chr20	789576	37	INTRON	INTRON	BLCAP	ENSG00000166619.15	ENST00000411780.1:ENST00000467603.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	80	2	2.6953	4.154805	5.61431	0.0217589	0.0207866	0.102713	0.100615
chr16	16155217	16155310	6556403	0	-	0.451613	(0.45,0.485]	chr16	653054	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6:ENST00000576204.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	215	2	3.98712	4.154475	4.32183	0.00559992	7.89274e-4	0.0493906	0.0120472
chr22	31625180	31625280	7788317	0	-	0.62	(0.58,1]	chr22	817185	2	SS5_PROX	SS5_PROX:INTRON	PISD	ENSG00000241878.12	ENST00000460723.5:ENST00000439502.7:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5:ENST00000474017.5:ENST00000478893.5:ENST00000491342.1:ENST00000422020.5:ENST00000442379.1:ENST00000429683.1:ENST00000431201.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	54	2	3.30273	4.15429	5.00585	0.0323732	0.0107069	0.121593	0.0700635
chr17	57350922	57351022	6760714	0	+	0.54	(0.523,0.58]	chr17	682104	402	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	61	2	3.58927	4.1542449999999995	4.71922	0.0721601	0.00656975	0.168159	0.0510026
chr17	72552935	72553034	6963840	0	-	0.494949	(0.485,0.523]	chr17	710389	185	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	5	303	2	4.15244	4.15396	4.15548	0.00693242	1.40491e-4	0.0553898	0.00351011
chr1	1026344	1026444	978	0	+	0.66	(0.58,1]	chr1	166	35	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.09402	4.153895	5.21377	0.0230012	0.0174733	0.102982	0.0928044
chr16	88580219	88580318	6521601	0	+	0.575758	(0.523,0.58]	chr16	646718	21	INTRON	INTRON	ZC3H18	ENSG00000158545.16	ENST00000301011.10:ENST00000452588.6:ENST00000569435.5	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	2.53438	4.153625	5.77287	0.0957531	0.00160162	0.189038	0.0197827
chr4	128858938	128859037	2132077	0	+	0.383838	(0.36,0.39]	chr4	216567	11	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	3.42171	4.1533549999999995	4.885	0.0697729	0.0115651	0.167185	0.0732257
chr6	143560897	143560997	3016915	0	+	0.48	(0.45,0.485]	chr6	294985	233	INTRON	INTRON	PHACTR2	ENSG00000112419.15	ENST00000367584.8	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.73402	4.1532599999999995	4.5725	0.0926859	0.0049945	0.188571	0.0428203
chr3	32864919	32865019	1439341	0	+	0.55	(0.523,0.58]	chr3	153401	456	INTRON	INTRON	TRIM71	ENSG00000206557.6	ENST00000383763.6	protein_coding	protein_coding	protein_coding	protein_coding	2	97	2	2.12522	4.153255	6.18129	0.0984283	5.34061e-4	0.192982	0.0091384
chr19	35004423	35004523	7244904	0	+	0.54	(0.523,0.58]	chr19	742073	12	INTRON	INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	105	2	2.81315	4.153185	5.49322	0.0347043	0.00324246	0.12648	0.0319521
chr13	50516885	50516985	5597792	0	+	0.46	(0.45,0.485]	chr13	551677	41	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000485007.5:ENST00000470726.7:ENST00000479420.5:ENST00000474630.6:ENST00000491482.5:ENST00000647700.1:ENST00000484869.6:ENST00000469095.6:ENST00000462427.2:ENST00000470593.5:ENST00000460525.6	lncRNA	lncRNA	lncRNA	lncRNA	1	73	2	2.87419	4.152955	5.43172	0.061784	0.00440365	0.158872	0.0393688
chrX	133790341	133790441	8114070	0	-	0.36	(0.33,0.36]	chrX	845523	358	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	101	2	2.76604	4.15285	5.53966	0.0251076	0.0115439	0.107672	0.0731187
chr4	87000754	87000854	2079746	0	+	0.33	(0.29,0.33]	chr4	212193	268	INTRON	INTRON	AFF1	ENSG00000172493.23	ENST00000504956.5:ENST00000395146.9:ENST00000507468.5:ENST00000674009.1:ENST00000503477.5:ENST00000511442.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	79	2	2.57345	4.152795	5.73214	0.026427	0.0146933	0.118113	0.0826843
chr2	239284774	239284874	1391556	0	-	0.54	(0.523,0.58]	chr2	148740	332	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	58	2	3.13506	4.152375	5.16969	0.0387762	0.0186841	0.131324	0.0976296
chr12	23790591	23790691	5386927	0	-	0.26	[0,0.29]	chr12	528175	276	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000537393.5:ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	67	2	2.4797	4.15228	5.82486	0.0920821	0.00117475	0.188571	0.0158316
chr8	86414352	86414451	3853840	0	+	0.363636	(0.36,0.39]	chr8	369757	21	INTRON	INTRON	WWP1	ENSG00000123124.14	ENST00000517970.6:ENST00000265428.4:ENST00000518683.5:ENST00000520374.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	62	2	2.85025	4.151925	5.4536	0.0373341	0.0321864	0.139793	0.121593
chr5	139657357	139657457	2549734	0	+	0.57	(0.523,0.58]	chr5	253168	58	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	3.27435	4.15181	5.02927	0.0321785	0.0095202	0.121593	0.0650078
chr16	85585334	85585434	6518926	0	+	0.58	(0.523,0.58]	chr16	646396	286	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.86937	4.15174	5.43411	0.0324455	0.026041	0.130548	0.109673
chr8	17967670	17967763	3764919	0	+	0.397849	(0.39,0.419]	chr8	361730	1	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	3.41977	4.151715	4.88366	0.0707789	0.0116434	0.168159	0.0736274
chr15	73689272	73689372	6150524	0	+	0.53	(0.523,0.58]	chr15	604912	38	INTRON	INTRON	CD276	ENSG00000103855.18	ENST00000567189.5:ENST00000537340.6:ENST00000318424.9:ENST00000318443.10:ENST00000560786.6:ENST00000558689.5:ENST00000561213.5:ENST00000560928.5:ENST00000563584.5:ENST00000561416.5:ENST00000560995.5:ENST00000567582.5:ENST00000561260.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	58	2	3.18279	4.151645	5.1205	0.0416463	0.0168396	0.136301	0.0919482
chr7	47477904	47478004	3588587	0	-	0.58	(0.523,0.58]	chr7	346123	248	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.18279	4.151645	5.1205	0.0416463	0.0168396	0.136301	0.0919482
chr2	55022392	55022492	1148251	0	-	0.44	(0.419,0.45]	chr2	125466	80	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.42658	4.15128	4.87598	0.0768574	0.0119035	0.174882	0.0749304
chr2	78263794	78263894	1210088	0	-	0.45	(0.419,0.45]	chr2	130071	3236	INTRON	INTRON	ENSG00000227088	ENSG00000227088.2	ENST00000667782.1	lncRNA	lncRNA	lncRNA	lncRNA	1	64	2	3.42658	4.15128	4.87598	0.0768574	0.0119035	0.174882	0.0749304
chr22	15818972	15819068	7682914	0	+	0.5	(0.485,0.523]	chr22	803567	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000383038.7:ENST00000447898.5:ENST00000607933.1	lncRNA	lncRNA	lncRNA	lncRNA	9	510	2	3.53289	4.150655	4.76842	8.69165e-4	4.72198e-4	0.0175759	0.00837686
chr12	56597252	56597349	5437625	0	-	0.391753	(0.39,0.419]	chr12	534676	18	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	2	171	2	4.04955	4.150565	4.25158	0.0105023	0.00156775	0.0691377	0.0194695
chr14	39085261	39085361	5967667	0	-	0.37	(0.36,0.39]	chr14	584639	1	SS5_PROX	SS5_PROX:INTRON	SEC23A	ENSG00000100934.15	ENST00000307712.11:ENST00000537403.5:ENST00000545328.6	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	2.50047	4.150265	5.80006	0.033505	0.0191255	0.133139	0.0952349
chr22	19900262	19900361	7765046	0	-	0.585859	(0.58,1]	chr22	813988	8	INTRON	INTRON	TXNRD2	ENSG00000184470.21	ENST00000400518.5:ENST00000542719.6:ENST00000494454.5:ENST00000474308.5:ENST00000400525.6:ENST00000400521.7:ENST00000400519.6:ENST00000635155.1:ENST00000491939.6:ENST00000334363.14:ENST00000475995.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	66	2	3.09824	4.150235	5.20223	0.0341637	0.00411607	0.125129	0.0374453
chr17	44473759	44473859	6912564	0	-	0.36	(0.33,0.36]	chr17	703854	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GPATCH8	ENSG00000186566.13	ENST00000591680.6:ENST00000587228.5:ENST00000585614.1:ENST00000590041.5:ENST00000592746.5:ENST00000586037.5:ENST00000592154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	73	2	2.79331	4.150135000000001	5.50696	0.0699642	0.00418696	0.167594	0.0379935
chr16	81630784	81630883	6509605	0	+	0.59596	(0.58,1]	chr16	645926	87	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.78186	4.1499950000000005	5.51813	0.0342923	0.013519	0.13449	0.0792526
chr16	50608560	50608660	6452013	0	+	0.63	(0.58,1]	chr16	639907	2	SS5_PROX	SS5_PROX:INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	72	2	2.70505	4.149760000000001	5.59447	0.0165599	0.0117666	0.0917029	0.0737098
chr16	85233765	85233865	6515406	0	+	0.66	(0.58,1]	chr16	646377	60	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	108	2	3.27622	4.14968	5.02314	0.0112073	0.00638322	0.0718473	0.0501889
chr10	79164031	79164131	4532997	0	+	0.42	(0.419,0.45]	chr10	432438	15	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.11129	4.149665	5.18804	0.051668	0.023073	0.148503	0.109758
chr6	144348199	144348299	3020492	0	+	0.46	(0.45,0.485]	chr6	295148	35	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1:ENST00000628146.2:ENST00000421035.2	protein_coding	protein_coding	protein_coding	protein_coding	7	145	2	1.68201	4.14963	6.61725	0.0599647	0.00395394	0.177416	0.0406092
chr16	53948884	53948984	6460003	0	+	0.45	(0.419,0.45]	chr16	640595	111	INTRON	INTRON	FTO	ENSG00000140718.21	ENST00000636491.1:ENST00000637001.1:ENST00000471389.6:ENST00000636992.1:ENST00000637969.1:ENST00000637845.1:ENST00000637562.1:ENST00000636030.1:ENST00000464071.1:ENST00000563011.2:ENST00000612285.2:ENST00000431610.6:ENST00000460382.5:ENST00000463855.1:ENST00000635892.1:ENST00000268349.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	62	2	3.02039	4.149535	5.27868	0.0457732	0.0276403	0.142336	0.120359
chr2	87546208	87546308	848112	0	+	0.44	(0.419,0.45]	chr2	95749	248	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000642451.1:ENST00000644478.1:ENST00000409139.6:ENST00000644125.1:ENST00000643743.1:ENST00000643276.1:ENST00000409898.2:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000646636.1:ENST00000629257.1:ENST00000409054.2	lncRNA	lncRNA	lncRNA	lncRNA	1	62	2	3.02039	4.149535	5.27868	0.0457732	0.0276403	0.142336	0.120359
chr9	75005745	75005845	4318066	0	-	0.45	(0.419,0.45]	chr9	412763	55	INTRON	INTRON	CARNMT1	ENSG00000156017.13	ENST00000376834.8:ENST00000451153.1	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.02039	4.149535	5.27868	0.0457732	0.0276403	0.142336	0.120359
chr3	61589858	61589958	1486896	0	+	0.41	(0.39,0.419]	chr3	160083	271	INTRON	INTRON	PTPRG	ENSG00000144724.20	ENST00000495879.1:ENST00000474889.6:ENST00000475527.1:ENST00000295874.14	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	100	2	2.5308	4.149185	5.76757	0.0205846	0.0204917	0.102713	0.0979776
chr20	8462845	8462945	7429896	0	+	0.48	(0.45,0.485]	chr20	773698	908	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	139	2	1.95369	4.148955	6.34422	0.086354	4.24458e-4	0.182221	0.00777807
chr20	34568538	34568637	7547113	0	-	0.525253	(0.523,0.58]	chr20	787854	72	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.03457	4.148945	5.26332	0.0337698	0.0231444	0.124319	0.109883
chr11	18010441	18010540	5015363	0	-	0.333333	(0.33,0.36]	chr11	484703	2	SS3_PROX	SS3_PROX:INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528200.5:ENST00000532265.5:ENST00000529728.5:ENST00000530613.5:ENST00000532389.5:ENST00000530925.5:ENST00000533328.5:ENST00000532212.5:ENST00000524716.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	114	2	1.93233	4.14889	6.36545	0.0536689	0.00644852	0.167824	0.0530227
chr8	122878231	122878331	3910628	0	+	0.37	(0.36,0.39]	chr8	373489	143	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6:ENST00000534247.1	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	3.57375	4.14853	4.72331	0.0236929	0.0228532	0.111208	0.102982
chr21	38806718	38806808	7620609	0	+	0.511111	(0.485,0.523]	chr21	796135	4	UTR5	UTR5:EXON_MRNA:INTRON	ETS2	ENSG00000157557.13	ENST00000360214.8:ENST00000665212.1:ENST00000667466.1:ENST00000360938.8:ENST00000432278.5:ENST00000666778.1	protein_coding	protein_coding	protein_coding	protein_coding	4	111	2	1.89906	4.14815	6.39724	0.0542037	0.00505512	0.167824	0.0465263
chr20	44424279	44424379	7483171	0	+	0.61	(0.58,1]	chr20	779689	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000619550.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	74	2	2.43115	4.14803	5.86491	0.0309513	0.00707578	0.127822	0.0558168
chr4	186675798	186675898	2374702	0	-	0.34	(0.33,0.36]	chr4	237245	118	INTRON	INTRON	FAT1	ENSG00000083857.15	ENST00000441802.7	protein_coding	protein_coding	protein_coding	protein_coding	2	163	2	3.94676	4.147955	4.34915	0.0112386	0.00111275	0.072027	0.0152496
chr7	74364815	74364913	3390937	0	+	0.469388	(0.45,0.485]	chr7	327282	1	INTRON	INTRON	CLIP2	ENSG00000106665.16	ENST00000223398.11:ENST00000361545.9	protein_coding	protein_coding	protein_coding	protein_coding	2	81	2	2.42327	4.14785	5.87243	0.0367983	0.0143887	0.139793	0.0821732
chr10	79218373	79218473	4533545	0	+	0.57	(0.523,0.58]	chr10	432457	17	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	78	2	2.60398	4.147774999999999	5.69157	0.0241539	0.0172851	0.112732	0.0897247
chr1	14943222	14943322	43839	0	+	0.5	(0.485,0.523]	chr1	4384	128	INTRON	INTRON	KAZN	ENSG00000189337.17	ENST00000636203.1:ENST00000376030.7:ENST00000491547.1:ENST00000503743.5:ENST00000361144.9:ENST00000400798.6:ENST00000376028.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	159	2	4.1411	4.14774	4.15438	0.00711965	0.00156066	0.0560147	0.0194067
chr2	149614632	149614732	920092	0	+	0.42	(0.419,0.45]	chr2	102788	202	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	2	89	2	3.15343	4.146965	5.1405	0.0550015	0.00839246	0.153337	0.0601673
chr16	47163962	47164062	6582819	0	-	0.35	(0.33,0.36]	chr16	658281	9	INTRON	INTRON	ITFG1	ENSG00000129636.13	ENST00000568047.5:ENST00000320640.11:ENST00000537184.6:ENST00000542691.5:ENST00000567957.1:ENST00000544001.6:ENST00000565262.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	60	2	3.08687	4.14687	5.20687	0.041040600000000003	0.0227116	0.136289	0.108285
chr17	32362015	32362114	6721222	0	+	0.333333	(0.33,0.36]	chr17	675149	1	INTRON	INTRON	ZNF207	ENSG00000010244.19	ENST00000321233.10:ENST00000394673.6:ENST00000394670.9:ENST00000342555.10:ENST00000577908.5:ENST00000394679.9:ENST00000581531.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	60	2	3.08687	4.14687	5.20687	0.041040600000000003	0.0227116	0.136289	0.108285
chr7	92614841	92614940	3636739	0	-	0.353535	(0.33,0.36]	chr7	350278	101	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000467166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	98	2	2.54645	4.1466899999999995	5.74693	0.019106	0.0181681	0.0994227	0.0921579
chr10	112185462	112185562	4760641	0	-	0.29	[0,0.29]	chr10	455255	18	INTRON	INTRON	GPAM	ENSG00000119927.14	ENST00000480130.5:ENST00000498541.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	191	2	2.6736	4.146615	5.61963	0.0694089	1.51352e-5	0.167028	6.8895e-4
chr9	136006635	136006735	4432138	0	-	0.44	(0.419,0.45]	chr9	423617	2	UTR3	UTR3:EXON_MRNA	NACC2	ENSG00000148411.8	ENST00000277554.4:ENST00000371753.5	protein_coding	protein_coding	protein_coding	protein_coding	2	88	2	3.10514	4.14659	5.18804	0.051668	0.00938681	0.148503	0.064735
chr10	75896723	75896823	4525136	0	+	0.48	(0.45,0.485]	chr10	432292	128	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	96	2	2.3347	4.1465700000000005	5.95844	0.0291402	0.0124835	0.124888	0.0761905
chr16	89301236	89301323	6659820	0	-	0.367816	(0.36,0.39]	chr16	666653	3	SS3_PROX	SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	124	2	2.80064	4.14644	5.49224	0.0304242	0.00818543	0.11845	0.0591121
chr6	63660067	63660166	2934506	0	+	0.343434	(0.33,0.36]	chr6	288800	129	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	60	2	3.13306	4.146185	5.15931	0.043896	0.0206439	0.139792	0.102713
chr11	102445139	102445238	5114480	0	-	0.333333	(0.33,0.36]	chr11	496626	426	INTRON	INTRON	TMEM123	ENSG00000152558.15	ENST00000361236.7:ENST00000398136.7:ENST00000532161.5:ENST00000528969.5:ENST00000529492.5:ENST00000525577.5:ENST00000531103.5:ENST00000526676.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	60	2	3.03916	4.146039999999999	5.25292	0.0384256	0.0250322	0.131324	0.114418
chr1	12592700	12592800	402530	0	-	0.61	(0.58,1]	chr1	46222	117	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	59	2	2.55596	4.145989999999999	5.73602	0.0534085	0.00904546	0.167062	0.0637469
chr19	55240300	55240400	7407335	0	-	0.65	(0.58,1]	chr19	771262	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PPP6R1	ENSG00000105063.19	ENST00000412770.7:ENST00000587283.5:ENST00000591323.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	59	2	2.55596	4.145989999999999	5.73602	0.0534085	0.00904546	0.167062	0.0637469
chr9	6856580	6856680	4115940	0	+	0.5	(0.485,0.523]	chr9	391873	65	INTRON	INTRON	KDM4C	ENSG00000107077.19	ENST00000536108.5:ENST00000438023.5:ENST00000381306.7:ENST00000381309.8:ENST00000489243.5:ENST00000543771.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	78	2	3.32827	4.1459399999999995	4.96361	0.0294165	0.0112713	0.116079	0.071709
chr7	17336685	17336785	3327144	0	+	0.39	(0.36,0.39]	chr7	322140	5	INTRON	INTRON	AHR	ENSG00000106546.14	ENST00000642825.1:ENST00000242057.9:ENST00000463496.1:ENST00000492120.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	61	2	3.14223	4.145905	5.14958	0.0493212	0.0209989	0.146207	0.103249
chr2	152593443	152593543	928053	0	+	0.5	(0.485,0.523]	chr2	103106	120	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14:ENST00000492942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	78	2	2.74097	4.145754999999999	5.55054	0.0215787	0.0180255	0.100612	0.0952934
chr4	183112218	183112318	2167523	0	+	0.38	(0.36,0.39]	chr4	219488	122	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000508614.5:ENST00000448232.6:ENST00000513834.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	61	2	3.00362	4.1457	5.28778	0.0407706	0.027769	0.135868	0.12074
chr10	38055960	38056060	4478516	0	+	0.41	(0.39,0.419]	chr10	428212	15	CDS	CDS:EXON_MRNA:INTRON	ZNF33A	ENSG00000189180.16	ENST00000307441.13:ENST00000374618.7:ENST00000628825.2:ENST00000458705.6:ENST00000432900.7:ENST00000469037.2	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.04938	4.1456	5.24182	0.0441194	0.0253994	0.140174	0.115502
chr17	66314717	66314817	6783551	0	+	0.4	(0.39,0.419]	chr17	684226	82	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	61	2	3.04938	4.1456	5.24182	0.0441194	0.0253994	0.140174	0.115502
chr20	47350088	47350188	7570831	0	-	0.4	(0.39,0.419]	chr20	791097	1	SS3_PROX	SS3_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.04938	4.1456	5.24182	0.0441194	0.0253994	0.140174	0.115502
chr11	70793345	70793445	5062215	0	-	0.46	(0.45,0.485]	chr11	492701	755	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	72	2	2.76944	4.144665	5.51989	0.0716626	0.00357389	0.168159	0.0342681
chr7	47363981	47364080	3587431	0	-	0.565657	(0.523,0.58]	chr7	346030	173	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	78	2	2.56415	4.14451	5.72487	0.0263234	0.0163679	0.117901	0.0875379
chr20	25494389	25494487	7539897	0	-	0.581633	(0.58,1]	chr20	787018	25	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5:ENST00000461642.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	291	2	4.00449	4.14427	4.28405	0.00242684	8.03741e-5	0.0310622	0.00232613
chr16	4483036	4483136	6378402	0	+	0.46	(0.45,0.485]	chr16	630669	60	INTRON	INTRON	HMOX2	ENSG00000103415.12	ENST00000575051.5:ENST00000406590.6:ENST00000619528.4:ENST00000619913.4:ENST00000458134.7:ENST00000219700.10:ENST00000570646.6:ENST00000575120.5:ENST00000574466.5:ENST00000572812.5:ENST00000576827.5:ENST00000574594.5:ENST00000570445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	3.1756	4.14395	5.1123	0.0458344	0.0180699	0.142336	0.0953579
chr11	975412	975511	4786868	0	+	0.646465	(0.58,1]	chr11	458521	28	INTRON	INTRON	AP2A2	ENSG00000183020.15	ENST00000529818.6:ENST00000332231.9:ENST00000448903.7:ENST00000534328.6:ENST00000525796.5:ENST00000529858.6:ENST00000693238.1:ENST00000687890.1:ENST00000687792.1:ENST00000528815.5:ENST00000528195.6:ENST00000531548.6:ENST00000534485.6:ENST00000527024.2:ENST00000526753.6:ENST00000530801.6:ENST00000524559.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	55	2	2.84993	4.143725	5.43752	0.0297842	0.0156166	0.126591	0.0849828
chr19	1169444	1169543	7305747	0	-	0.636364	(0.58,1]	chr19	753058	4	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.84993	4.143725	5.43752	0.0297842	0.0156166	0.126591	0.0849828
chr9	136010817	136010917	4432180	0	-	0.63	(0.58,1]	chr9	423617	44	UTR3	UTR3:EXON_MRNA	NACC2	ENSG00000148411.8	ENST00000277554.4:ENST00000371753.5	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	2.93515	4.143645	5.35214	0.0181452	0.00938921	0.0921579	0.064735
chr1	51669622	51669718	123095	0	+	0.447917	(0.419,0.45]	chr1	15333	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	OSBPL9	ENSG00000117859.19	ENST00000371714.5:ENST00000428468.6:ENST00000447887.5:ENST00000495776.5:ENST00000435274.6:ENST00000453295.5:ENST00000489990.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	63	2	3.35398	4.14344	4.9329	0.0716557	0.0139289	0.168159	0.0824192
chr16	46901686	46901785	6442600	0	+	0.636364	(0.58,1]	chr16	639007	5	INTRON	INTRON	GPT2	ENSG00000166123.14	ENST00000340124.9:ENST00000562132.5:ENST00000440783.2	protein_coding	protein_coding	protein_coding	protein_coding	3	86	2	2.51731	4.143325	5.76934	0.0156878	0.00849371	0.0880112	0.0617717
chr8	9772423	9772523	3754902	0	+	0.24	[0,0.29]	chr8	360886	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.23227	4.14318	5.05409	0.0318802	0.0143247	0.12158	0.0833845
chr10	28678173	28678273	4470345	0	+	0.77	(0.58,1]	chr10	427719	2	SS5_PROX	SS5_PROX:INTRON	BAMBI	ENSG00000095739.11	ENST00000497699.1:ENST00000375533.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	54	2	3.39676	4.143105	4.88945	0.0388928	0.0085026	0.131324	0.0608246
chr19	944713	944813	7185293	0	+	0.56	(0.523,0.58]	chr19	730741	116	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	414	2	3.52511	4.14305	4.76099	9.06316e-4	8.88936e-4	0.0177608	0.0132726
chr11	27451731	27451831	5019700	0	-	0.39	(0.36,0.39]	chr11	485493	385	INTRON	INTRON	LGR4	ENSG00000205213.14	ENST00000379214.9:ENST00000389858.4:ENST00000480977.2	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	2.59031	4.143025	5.69574	0.0956255	0.00299965	0.189038	0.030427
chr11	115461019	115461119	5130700	0	-	0.38	(0.36,0.39]	chr11	498122	148	INTRON	INTRON	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000541434.5:ENST00000543249.1:ENST00000540951.1:ENST00000536781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	74	2	2.59031	4.143025	5.69574	0.0956255	0.00299965	0.189038	0.030427
chr22	46291608	46291702	7743267	0	+	0.5	(0.485,0.523]	chr22	811892	14	INTRON	INTRON	TTC38	ENSG00000075234.17	ENST00000381031.8:ENST00000451998.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	82	2	2.23742	4.142885	6.04835	0.0515447	0.00941539	0.165949	0.0653252
chr14	103684485	103684582	5924678	0	+	0.639175	(0.58,1]	chr14	579654	1	SS3_PROX	SS3_PROX:INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000380038.7:ENST00000334553.11:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8:ENST00000537046.6:ENST00000553325.5:ENST00000555856.1:ENST00000535194.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	215	2	3.69276	4.1428449999999994	4.59293	0.00177443	5.59806e-4	0.0262073	0.00945371
chr6	3310392	3310492	3086589	0	-	0.58	(0.523,0.58]	chr6	299762	118	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000467144.5:ENST00000496753.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	80	2	2.34664	4.14264	5.93864	0.0413259	0.0114442	0.148318	0.0723462
chr10	86463683	86463783	4721964	0	-	0.45	(0.419,0.45]	chr10	450692	20	INTRON	INTRON	WAPL	ENSG00000062650.20	ENST00000298767.10:ENST00000372075.2	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	2.7644	4.142565	5.52073	0.0447981	0.0327198	0.154539	0.122543
chr16	85385737	85385837	6516928	0	+	0.62	(0.58,1]	chr16	646391	264	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	3.02751	4.14241	5.25731	0.0385189	0.00358178	0.131324	0.0342681
chr9	123405886	123405985	4396619	0	-	0.59596	(0.58,1]	chr9	419589	20	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	65	2	3.02751	4.14241	5.25731	0.0385189	0.00358178	0.131324	0.0342681
chr9	133914963	133915063	4429550	0	-	0.61	(0.58,1]	chr9	423310	532	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.97713	4.1423000000000005	5.30747	0.0226795	0.0196049	0.108193	0.0955413
chr3	124746478	124746578	1555437	0	+	0.4	(0.39,0.419]	chr3	164821	25	UTR3	UTR3:EXON_MRNA	UMPS	ENSG00000114491.14	ENST00000232607.7	protein_coding	protein_coding	protein_coding	protein_coding	3	100	2	2.1811	4.14206	6.10302	0.0426611	0.0120635	0.149818	0.0745226
chr13	33916602	33916702	5567615	0	+	0.46	(0.45,0.485]	chr13	549341	659	INTRON	INTRON	RFC3	ENSG00000133119.13	ENST00000434425.5:ENST00000616236.1	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.38668	4.1417649999999995	4.89685	0.0614781	0.0113463	0.158506	0.0719708
chr16	89302036	89302136	6659829	0	-	0.55	(0.523,0.58]	chr16	666657	4	SS3_PROX	SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	209	2	3.90397	4.1416699999999995	4.37937	0.0110124	2.15373e-4	0.0708586	0.00477041
chr14	103106484	103106584	5921884	0	+	0.58	(0.523,0.58]	chr14	579222	3	SS3_PROX	SS3_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	153	2	3.76107	4.1413899999999995	4.52171	0.0141879	5.43906e-4	0.0816012	0.00927567
chr11	96057401	96057501	5110709	0	-	0.4	(0.39,0.419]	chr11	496560	653	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6:ENST00000618849.1	protein_coding	protein_coding	protein_coding	protein_coding	2	87	2	2.15477	4.14126	6.12775	0.0645366	0.0115883	0.185295	0.0731017
chr10	75464316	75464416	4520801	0	+	0.37	(0.36,0.39]	chr10	432249	127	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	2.67993	4.141115	5.6023	0.0258522	0.0231725	0.109982	0.109555
chr13	64068755	64068855	5725382	0	-	0.39	(0.36,0.39]	chr13	561442	339	INTRON	INTRON	LINC00355	ENSG00000227674.3	ENST00000650541.1:ENST00000456627.1:ENST00000669788.1:ENST00000654282.1	lncRNA	lncRNA	lncRNA	lncRNA	2	82	2	2.67993	4.141115	5.6023	0.0258522	0.0231725	0.109982	0.109555
chr2	187503347	187503447	1343019	0	-	0.37	(0.36,0.39]	chr2	142473	3	SS5_PROX	SS5_PROX:INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000392365.5:ENST00000481132.5:ENST00000435414.5:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000437725.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	75	2	2.87382	4.141055	5.40829	0.0653866	0.00581205	0.162385	0.0472624
chr9	34226334	34226434	4141203	0	+	0.48	(0.45,0.485]	chr9	393829	50	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2:ENST00000359544.2	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.81608	4.14083	5.46558	0.0375071	0.0273644	0.139823	0.112372
chr3	128494025	128494124	1563236	0	+	0.575758	(0.523,0.58]	chr3	165331	36	INTRON	INTRON	GATA2-AS1	ENSG00000244300.3	ENST00000464242.1:ENST00000468377.1:ENST00000669945.1	lncRNA	lncRNA	lncRNA	lncRNA	2	86	2	3.37623	4.140615	4.905	0.0563605	0.00375949	0.154188	0.0353672
chr11	33332391	33332490	4838240	0	+	0.323232	(0.29,0.33]	chr11	462603	34	INTRON	INTRON	HIPK3	ENSG00000110422.12	ENST00000525975.5:ENST00000303296.9:ENST00000379016.7:ENST00000456517.2:ENST00000534262.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	80	2	3.01059	4.140565	5.27054	0.0308815	0.00981487	0.119556	0.0664239
chr17	29131435	29131535	6876477	0	-	0.54	(0.523,0.58]	chr17	697998	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000590242.5:ENST00000528564.2:ENST00000528322.6:ENST00000585573.6:ENST00000533420.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	70	2	2.6197	4.139645	5.65959	0.0853454	0.0021416	0.181766	0.0240825
chr11	70762269	70762369	5061904	0	-	0.55	(0.523,0.58]	chr11	492701	444	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	70	2	2.70025	4.139525	5.5788	0.0763549	0.00262418	0.174544	0.0278348
chr16	81552179	81552279	6508815	0	+	0.56	(0.523,0.58]	chr16	645911	563	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	2.70025	4.139525	5.5788	0.0763549	0.00262418	0.174544	0.0278348
chr15	56958074	56958174	6110737	0	+	0.45	(0.419,0.45]	chr15	601587	366	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	62	2	3.23773	4.13908	5.04043	0.0625897	0.0178095	0.160305	0.0943752
chr16	67966352	67966452	6610213	0	-	0.54	(0.523,0.58]	chr16	661571	2	SS5_PROX	SS5_PROX:INTRON	SLC12A4	ENSG00000124067.17	ENST00000422611.6:ENST00000316341.8:ENST00000572037.5:ENST00000541864.6:ENST00000570802.5:ENST00000576616.5:ENST00000573023.6:ENST00000576377.1:ENST00000571299.5:ENST00000572010.5:ENST00000576462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	58	2	2.92656	4.1389	5.35124	0.0295772	0.0289226	0.124	0.116079
chr16	89544353	89544451	6524210	0	+	0.561224	(0.523,0.58]	chr16	647212	15	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SPG7	ENSG00000197912.16	ENST00000647079.1:ENST00000646303.1:ENST00000643649.1:ENST00000644498.1:ENST00000645897.1:ENST00000643668.1:ENST00000644225.1:ENST00000645818.2:ENST00000645977.1:ENST00000645063.1:ENST00000646263.1:ENST00000643724.1:ENST00000644781.1:ENST00000644901.1:ENST00000645042.1:ENST00000646531.1:ENST00000646930.1:ENST00000644210.1:ENST00000646589.1:ENST00000268704.7:ENST00000646826.1:ENST00000646716.1:ENST00000643345.1:ENST00000646958.1:ENST00000643105.1:ENST00000645354.1:ENST00000642334.1:ENST00000647227.1:ENST00000646445.1:ENST00000643954.1:ENST00000646399.1:ENST00000644671.1:ENST00000644748.1:ENST00000643496.1:ENST00000647032.1:ENST00000644751.1:ENST00000642427.1:ENST00000643370.1:ENST00000645886.1:ENST00000646454.1:ENST00000561945.2:ENST00000644171.1:ENST00000566682.2:ENST00000645258.1:ENST00000644044.1:ENST00000642263.1:ENST00000644556.1:ENST00000645842.1:ENST00000643734.1:ENST00000642814.1:ENST00000644061.1:ENST00000643350.1:ENST00000645392.1:ENST00000647302.1:ENST00000644930.1:ENST00000647123.1:ENST00000643409.1:ENST00000642226.1:ENST00000646005.1:ENST00000642984.1:ENST00000647491.1:ENST00000645952.1:ENST00000645944.1:ENST00000646543.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	58	2	2.92656	4.1389	5.35124	0.0295772	0.0289226	0.124	0.116079
chr22	29290976	29291073	7708244	0	+	0.43299	(0.419,0.45]	chr22	806496	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EWSR1	ENSG00000182944.18	ENST00000629659.2:ENST00000332050.10:ENST00000397938.7:ENST00000406548.5:ENST00000331029.11:ENST00000483415.5:ENST00000414183.6:ENST00000332035.10:ENST00000479135.5:ENST00000469669.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	101	2	2.5494	4.13867	5.72794	0.0242188	0.0203943	0.106588	0.102656
chr16	81619580	81619679	6509492	0	+	0.636364	(0.58,1]	chr16	645921	87	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	66	2	3.13234	4.138655	5.14497	0.0322188	0.00474658	0.121593	0.0413976
chr4	715339	715439	1993781	0	+	0.62	(0.58,1]	chr4	203088	90	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	66	2	3.13234	4.138655	5.14497	0.0322188	0.00474658	0.121593	0.0413976
chr9	134365981	134366081	4261083	0	+	0.63	(0.58,1]	chr9	406311	390	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	66	2	3.13234	4.138655	5.14497	0.0322188	0.00474658	0.121593	0.0413976
chr13	41879607	41879706	5699277	0	-	0.30303	(0.29,0.33]	chr13	559222	108	INTRON	INTRON	VWA8	ENSG00000102763.18	ENST00000379310.8:ENST00000281496.6	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.0064	4.13847	5.27054	0.0308815	0.0251671	0.119556	0.114704
chr11	378223	378322	4784082	0	+	0.616162	(0.58,1]	chr11	457781	5	INTRON	INTRON	B4GALNT4	ENSG00000182272.12	ENST00000329962.11	protein_coding	protein_coding	protein_coding	protein_coding	4	229	2	3.27136	4.138435	5.00551	0.00202817	7.04076e-4	0.0232814	0.0156243
chr13	50413724	50413820	5596750	0	+	0.385417	(0.36,0.39]	chr13	551623	2	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000485007.5:ENST00000475913.5:ENST00000469127.5:ENST00000470726.7:ENST00000479420.5:ENST00000474630.6:ENST00000491482.5:ENST00000647700.1:ENST00000484869.6:ENST00000469095.6	lncRNA	lncRNA	lncRNA	lncRNA	1	61	2	2.9032	4.138135	5.37307	0.0361409	0.0337607	0.133139	0.127853
chr3	15098774	15098847	1694741	0	-	0.575342	(0.523,0.58]	chr3	177106	1	SS5_PROX	SS5_PROX:INTRON	RBSN	ENSG00000131381.12	ENST00000253699.7:ENST00000476527.6:ENST00000449964.6:ENST00000441057.5:ENST00000449050.5:ENST00000507357.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	70	2	2.57767	4.138005	5.69834	0.090356	0.00194036	0.186369	0.0225083
chr20	62029406	62029506	7583442	0	-	0.64	(0.58,1]	chr20	792369	143	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000252996.9:ENST00000608887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	2.91446	4.137995	5.36153	0.0464528	0.00273899	0.143232	0.028553
chr11	72702083	72702183	5069928	0	-	0.55	(0.523,0.58]	chr11	493378	3	SS3_PROX	SS3_PROX:INTRON	ARAP1	ENSG00000186635.15	ENST00000359373.9:ENST00000393609.8:ENST00000465814.5:ENST00000334211.12:ENST00000393605.7:ENST00000426523.5:ENST00000429686.5:ENST00000427971.6:ENST00000452383.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	61	2	3.62427	4.13792	4.65157	0.0787008	0.0060311	0.175203	0.0484641
chr20	25495275	25495374	7539906	0	-	0.69697	(0.58,1]	chr20	787018	34	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5:ENST00000461642.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	86	2	2.37881	4.13711	5.89541	0.0219036	0.0066708	0.106977	0.0540577
chr2	165938360	165938458	1301067	0	-	0.397959	(0.39,0.419]	chr2	139566	8	INTRON	INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000679840.1:ENST00000680448.1:ENST00000681606.1:ENST00000679671.1:ENST00000464374.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	61	2	3.22582	4.136985	5.04815	0.0572698	0.0176855	0.154343	0.093839
chr13	51753604	51753701	5605651	0	+	0.350515	(0.33,0.36]	chr13	552062	6	INTRON	INTRON	WDFY2	ENSG00000139668.9	ENST00000298125.7	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	2.28913	4.136464999999999	5.9838	0.0492629	0.0123642	0.160725	0.0758857
chr3	171732843	171732943	1957776	0	-	0.51	(0.485,0.523]	chr3	199043	64	INTRON	INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9:ENST00000498278.5:ENST00000475273.6:ENST00000440204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	2.79862	4.136435	5.47425	0.0375966	0.0243396	0.139924	0.106588
chr7	130047578	130047677	3708058	0	-	0.494949	(0.485,0.523]	chr7	356333	17	INTRON	INTRON	ZC3HC1	ENSG00000091732.17	ENST00000311873.9:ENST00000358303.9:ENST00000360708.9:ENST00000467642.5:ENST00000648450.1:ENST00000481503.5:ENST00000471022.5:ENST00000483827.1:ENST00000480193.5:ENST00000470651.1:ENST00000484432.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	2.79862	4.136435	5.47425	0.0375966	0.0243396	0.139924	0.106588
chr19	499442	499541	7303899	0	-	0.575758	(0.523,0.58]	chr19	752539	87	INTRON	INTRON	MADCAM1-AS1	ENSG00000266933.2	ENST00000592413.2	lncRNA	lncRNA	lncRNA	lncRNA	1	60	2	3.55341	4.136315	4.71922	0.0721601	0.00716661	0.168159	0.0541871
chr9	129497764	129497859	4250753	0	+	0.663158	(0.58,1]	chr9	404722	3	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	8	137	2	1.96068	4.136305	6.31193	0.0249022	0.00289626	0.114418	0.03418
chr12	120982970	120983069	5340960	0	+	0.545455	(0.523,0.58]	chr12	521546	35	INTRON	INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000400024.6:ENST00000560968.5:ENST00000402929.5:ENST00000535955.5:ENST00000538626.2:ENST00000538646.5:ENST00000541924.5:ENST00000544574.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	71	2	2.918	4.13626	5.35452	0.0558053	0.00453096	0.154188	0.0400651
chr19	1416160	1416255	7187510	0	+	0.578947	(0.523,0.58]	chr19	731289	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5:ENST00000587833.5:ENST00000589484.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	93	2	2.36236	4.136165	5.90997	0.0261999	0.012016	0.117385	0.0743424
chr12	57151439	57151537	5240634	0	+	0.540816	(0.523,0.58]	chr12	510200	15	INTRON	INTRON	LRP1	ENSG00000123384.14	ENST00000243077.8:ENST00000554174.1	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	2.61478	4.136135	5.65749	0.052707	0.0182707	0.167062	0.0921579
chr17	72406504	72406603	6962350	0	-	0.484848	(0.45,0.485]	chr17	710302	13	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000648907.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000650483.1:ENST00000650371.1:ENST00000650313.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000647593.1:ENST00000649311.1:ENST00000457958.7:ENST00000649881.1:ENST00000649647.1:ENST00000648401.1:ENST00000648297.1:ENST00000578206.2:ENST00000649172.1:ENST00000649733.1:ENST00000650212.1:ENST00000648520.1:ENST00000649250.1:ENST00000648069.1:ENST00000647652.1:ENST00000647953.1:ENST00000650051.1:ENST00000648411.1:ENST00000648176.2:ENST00000649433.1:ENST00000648403.1:ENST00000580500.5:ENST00000649269.1:ENST00000577828.6:ENST00000580948.1:ENST00000650600.1	lncRNA	lncRNA	lncRNA	lncRNA	2	79	2	2.62266	4.13594	5.64922	0.0243222	0.020599	0.113231	0.0982852
chr21	33234151	33234251	7609110	0	+	0.4	(0.39,0.419]	chr21	794612	32	INTRON	INTRON	IFNAR2	ENSG00000159110.21	ENST00000683941.1:ENST00000382264.7:ENST00000342136.9:ENST00000404220.7:ENST00000420068.1:ENST00000342101.7:ENST00000382238.6:ENST00000413881.5:ENST00000443073.5:ENST00000447980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	309	2	3.94792	4.135675	4.32343	0.00586847	3.79404e-4	0.0506158	0.00720563
chr3	66036295	66036395	1815845	0	-	0.5	(0.485,0.523]	chr3	187318	272	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	71	2	2.92022	4.13559	5.35096	0.0555127	0.0047171	0.154188	0.0413976
chr16	8684150	8684250	6381231	0	+	0.47	(0.45,0.485]	chr16	631147	7	INTRON	INTRON	ABAT	ENSG00000183044.12	ENST00000564714.5:ENST00000268251.13:ENST00000563992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	139	2	2.39859	4.13551	5.87243	0.0143887	0.0134549	0.0821732	0.0806831
chr7	47359500	47359600	3587386	0	-	0.24	[0,0.29]	chr7	346030	128	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	2.35245	4.13551	5.91857	0.0395239	0.00698542	0.143388	0.0555241
chr22	38291458	38291554	7810675	0	-	0.5625	(0.523,0.58]	chr22	818864	9	UTR3	UTR3:EXON_MRNA	CSNK1E	ENSG00000213923.13	ENST00000359867.7:ENST00000396832.6	protein_coding	protein_coding	protein_coding	protein_coding	2	81	2	2.24954	4.135455	6.02137	0.0500176	0.00992924	0.161481	0.0671959
chr7	143386873	143386970	3510774	0	+	0.556701	(0.523,0.58]	chr7	338486	23	INTRON	INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	70	2	2.53438	4.135235	5.73609	0.0957531	0.0017613	0.189038	0.0211077
chr10	103838015	103838115	4758485	0	-	0.58	(0.523,0.58]	chr10	454819	363	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	2	78	2	2.48104	4.13514	5.78924	0.0313926	0.0147166	0.127822	0.0826843
chr7	47479003	47479103	3588598	0	-	0.57	(0.523,0.58]	chr7	346123	259	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	2.77655	4.134885	5.49322	0.0685533	0.00324246	0.165066	0.0319521
chr11	68352995	68353094	4882488	0	+	0.545455	(0.523,0.58]	chr11	470548	44	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	101	2	2.69087	4.134835	5.5788	0.0422993	0.00262418	0.13762	0.0278348
chr16	89291799	89291899	6659723	0	-	0.56	(0.523,0.58]	chr16	666646	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	222	2	3.58132	4.13471	4.6881	0.0193579	8.29583e-5	0.0954964	0.00237656
chr16	16330657	16330757	6408875	0	+	0.6	(0.58,1]	chr16	633511	2	SS3_PROX	SS3_PROX:INTRON	ENSG00000183889	ENSG00000183889.12	ENST00000537112.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	54	2	3.44157	4.13455	4.82753	0.0427798	0.00760198	0.13762	0.0561937
chrX	109710373	109710473	8091239	0	-	0.33	(0.29,0.33]	chrX	843713	138	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000508092.5:ENST00000504383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	58	2	2.95342	4.1343	5.31518	0.0288318	0.0280419	0.121542	0.116067
chr16	72056066	72056160	6491132	0	+	0.510638	(0.485,0.523]	chr16	645056	16	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HP	ENSG00000257017.10	ENST00000355906.10:ENST00000570083.5:ENST00000398131.6:ENST00000569639.5:ENST00000562488.5:ENST00000565807.6:ENST00000562526.5:ENST00000566821.1:ENST00000357763.8:ENST00000564499.5:ENST00000565574.5:ENST00000568417.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	94	2	3.61659	4.134285	4.65198	0.0783889	0.00201487	0.175203	0.0231567
chr12	23950061	23950161	5388529	0	-	0.29	[0,0.29]	chr12	528203	4	SS3_PROX	SS3_PROX:INTRON	SOX5	ENSG00000134532.19	ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2:ENST00000536729.2:ENST00000446891.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	124	2	3.16163	4.13428	5.10693	0.0292928	0.00231828	0.116079	0.0255753
chr7	47377614	47377714	3587568	0	-	0.51	(0.485,0.523]	chr7	346036	76	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	72	2	3.0179	4.13419	5.25048	0.0479403	0.0059614	0.144601	0.0479866
chr7	47347951	47348050	3587270	0	-	0.626263	(0.58,1]	chr7	346030	12	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	4	214	2	3.66322	4.134175	4.60513	0.0017275	6.14419e-4	0.0257605	0.0101067
chr19	8247436	8247536	7200358	0	+	0.55	(0.523,0.58]	chr19	734198	56	INTRON	INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	62	2	2.54344	4.134155	5.72487	0.0599121	0.0163679	0.177269	0.0875379
chr16	81672470	81672570	6510034	0	+	0.47	(0.45,0.485]	chr16	645972	4	SS5_PROX	SS5_PROX:INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	2	79	2	2.58493	4.1341149999999995	5.6833	0.0263561	0.0195193	0.118015	0.0955413
chr2	179229718	179229818	1328058	0	-	0.25	[0,0.29]	chr2	141710	375	INTRON	INTRON	SESTD1	ENSG00000187231.14	ENST00000428443.8:ENST00000440010.5:ENST00000435047.5:ENST00000452991.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	65	2	2.80363	4.13406	5.46449	0.0568711	0.00299691	0.154343	0.030427
chr3	58010555	58010655	1483059	0	+	0.44	(0.419,0.45]	chr3	159572	13	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	77	2	2.91455	4.13386	5.35317	0.06467	0.00714797	0.162218	0.0541241
chr6	128493148	128493248	3256902	0	-	0.26	[0,0.29]	chr6	315230	9	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000524534.5:ENST00000525459.1:ENST00000392449.4:ENST00000532751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	66	2	2.99728	4.133649999999999	5.27002	0.0416889	0.0048238	0.13639	0.0417661
chr1	94462695	94462793	187296	0	+	0.418367	(0.39,0.419]	chr1	20299	37	INTRON	INTRON	ABCD3	ENSG00000117528.14	ENST00000370214.9:ENST00000647998.2:ENST00000315713.5:ENST00000468860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	3.38301	4.133335	4.88366	0.0707789	0.0126232	0.168159	0.0768792
chr9	134060584	134060684	4430658	0	-	0.57	(0.523,0.58]	chr9	423412	47	INTRON	INTRON	BRD3	ENSG00000169925.17	ENST00000303407.12:ENST00000371834.6	protein_coding	protein_coding	protein_coding	protein_coding	2	154	2	3.9866	4.13319	4.27978	0.00948884	0.00107949	0.0656203	0.0149203
chr1	228142428	228142528	358008	0	+	0.66	(0.58,1]	chr1	40401	2	INTRON	INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	65	2	3.06331	4.13277	5.20223	0.036259	0.00411607	0.127941	0.0374453
chr17	82716896	82716996	6818046	0	+	0.8	(0.58,1]	chr17	689117	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	FN3KRP	ENSG00000141560.15	ENST00000269373.11:ENST00000574832.5:ENST00000574356.5:ENST00000574206.5:ENST00000577128.1:ENST00000573158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	65	2	3.06331	4.13277	5.20223	0.036259	0.00411607	0.127941	0.0374453
chr1	8757534	8757634	395132	0	-	0.42	(0.419,0.45]	chr1	45073	38	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.27753	4.1326	4.98767	0.0669167	0.0163857	0.16272	0.0910838
chrX	133829503	133829603	8114462	0	-	0.32	(0.29,0.33]	chrX	845523	750	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	59	2	3.4119	4.132375	4.85285	0.0567079	0.0103834	0.154343	0.0682598
chr11	16948781	16948881	5011056	0	-	0.56	(0.523,0.58]	chr11	484333	354	INTRON	INTRON	PLEKHA7	ENSG00000166689.17	ENST00000531066.6:ENST00000355661.7:ENST00000532079.1:ENST00000529213.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	58	2	3.35934	4.13217	4.905	0.0563605	0.0113252	0.154188	0.071894
chr9	124497015	124497114	4402695	0	-	0.575758	(0.523,0.58]	chr9	419817	35	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.35934	4.13217	4.905	0.0563605	0.0113252	0.154188	0.071894
chr2	102143020	102143120	863818	0	+	0.66	(0.58,1]	chr2	97795	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	IL1R1	ENSG00000115594.12	ENST00000452403.5:ENST00000409929.5:ENST00000424272.5:ENST00000409589.5:ENST00000409329.5:ENST00000450319.5:ENST00000428279.5:ENST00000442590.5:ENST00000410023.6:ENST00000409288.5	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	2.74604	4.132085	5.51813	0.015009	0.013519	0.0852854	0.0792526
chr2	138568238	138568336	904562	0	+	0.438776	(0.419,0.45]	chr2	101982	29	INTRON	INTRON	SPOPL	ENSG00000144228.9	ENST00000280098.9:ENST00000420679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	62	2	2.81936	4.131915	5.44447	0.0405181	0.0364384	0.145945	0.128173
chr22	38291554	38291650	7810676	0	-	0.625	(0.58,1]	chr22	818864	10	UTR3	UTR3:EXON_MRNA	CSNK1E	ENSG00000213923.13	ENST00000359867.7:ENST00000396832.6	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	2.95313	4.1317450000000004	5.31036	0.0435972	0.00312721	0.139245	0.0311915
chr22	46906595	46906694	7746457	0	+	0.484848	(0.45,0.485]	chr22	812218	114	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	60	2	3.42543	4.13149	4.83755	0.06646	0.0103881	0.162385	0.0682598
chr17	80224836	80224936	6806867	0	+	0.65	(0.58,1]	chr17	687275	11	INTRON	INTRON	SLC26A11	ENSG00000181045.15	ENST00000361193.8:ENST00000546047.6:ENST00000411502.7:ENST00000571888.5:ENST00000576126.5:ENST00000572725.5:ENST00000571564.5:ENST00000571176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	53	2	3.1491	4.131325	5.11355	0.0271806	0.0154006	0.112113	0.0869771
chr2	32358383	32358483	747773	0	+	0.48	(0.45,0.485]	chr2	87153	5	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.75654	4.130380000000001	5.50422	0.0419966	0.0257993	0.149115	0.109555
chr2	87653824	87653924	849197	0	+	0.45	(0.419,0.45]	chr2	95792	172	INTRON	INTRON	ENSG00000284879	ENSG00000284879.1	ENST00000643276.1:ENST00000646855.1	lncRNA	lncRNA	lncRNA	lncRNA	2	171	2	3.61678	4.1303149999999995	4.64385	0.0229694	5.96394e-4	0.102982	0.00990739
chr14	89203935	89204035	6026134	0	-	0.38	(0.36,0.39]	chr14	591423	131	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000555010.1:ENST00000557718.5:ENST00000553353.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	166	2	3.63198	4.130245	4.62851	0.0208059	5.71258e-4	0.0990286	0.00960229
chr17	44065771	44065867	6910576	0	-	0.520833	(0.485,0.523]	chr17	703401	15	INTRON	INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	2.81545	4.13017	5.44489	0.0647139	0.00377098	0.162218	0.0353672
chr10	79245435	79245535	4533816	0	+	0.62	(0.58,1]	chr10	432461	13	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10:ENST00000472035.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	55	2	2.78186	4.130125	5.47839	0.0342923	0.0145198	0.13449	0.0823104
chr11	70537030	70537130	5059643	0	-	0.6	(0.58,1]	chr11	492663	337	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	55	2	2.78186	4.130125	5.47839	0.0342923	0.0145198	0.13449	0.0823104
chr1	17679579	17679679	55007	0	+	0.43	(0.419,0.45]	chr1	5603	146	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	101	2	2.11552	4.129865000000001	6.14421	0.0495179	0.0127879	0.160725	0.0769397
chr10	114434081	114434180	4762104	0	-	0.50505	(0.485,0.523]	chr10	455500	31	UTR3	UTR3:EXON_MRNA	ABLIM1	ENSG00000099204.21	ENST00000533213.7:ENST00000392955.7:ENST00000392952.7	protein_coding	protein_coding	protein_coding	protein_coding	2	78	2	2.90803	4.12985	5.35167	0.0294163	0.0122695	0.116079	0.0759225
chr11	120219300	120219399	4950955	0	+	0.585859	(0.58,1]	chr11	478307	19	INTRON	INTRON	OAF	ENSG00000184232.9	ENST00000328965.9:ENST00000531220.1	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.09402	4.129275	5.16453	0.0249802	0.0174733	0.10758	0.0928044
chr8	22388358	22388457	3770232	0	+	0.575758	(0.523,0.58]	chr8	362727	85	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	10	412	2	3.07554	4.129165	5.18279	0.00142099	9.37854e-4	0.018323	0.0181715
chr2	134236806	134236906	896599	0	+	0.46	(0.45,0.485]	chr2	101196	1093	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	2.87326	4.129145	5.38503	0.033576	0.0308908	0.133139	0.119556
chr2	11578531	11578631	720658	0	+	0.32	(0.29,0.33]	chr2	84131	1	SS5_PROX	SS5_PROX:INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000263834.9:ENST00000389825.7:ENST00000381483.6:ENST00000234142.9	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.28897	4.129055	4.96914	0.0481918	0.0137233	0.144601	0.0814223
chr7	30160105	30160204	3338871	0	+	0.444444	(0.419,0.45]	chr7	323119	27	UTR3	UTR3:EXON_MRNA	MTURN	ENSG00000180354.16	ENST00000324453.13:ENST00000324489.5	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	2.46706	4.12897	5.79088	0.0367089	0.022052	0.139793	0.101502
chr16	78441951	78442051	6498831	0	+	0.55	(0.523,0.58]	chr16	645683	88	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000684632.1:ENST00000627394.3:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6:ENST00000408984.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	248	2	4.07628	4.128935	4.18159	0.00663351	2.67054e-4	0.0540577	0.00557451
chr7	47471012	47471112	3588518	0	-	0.59	(0.58,1]	chr7	346123	179	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.55596	4.128935	5.70191	0.0534085	0.00964351	0.167062	0.0659937
chr6	154749611	154749711	3044274	0	+	0.47	(0.45,0.485]	chr6	296626	72	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	71	2	2.69512	4.128575	5.56203	0.0794176	0.00322991	0.176565	0.0319521
chr19	40232784	40232883	7379267	0	-	0.616162	(0.58,1]	chr19	765595	26	UTR3	UTR3:EXON_MRNA	AKT2	ENSG00000105221.18	ENST00000392038.7:ENST00000424901.5:ENST00000483166.5:ENST00000476266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	189	2	3.53542	4.12857	4.72172	0.00181405	0.00133472	0.0223284	0.0215865
chr2	135346528	135346627	1274577	0	-	0.333333	(0.33,0.36]	chr2	137436	5	INTRON	INTRON	ZRANB3	ENSG00000121988.18	ENST00000264159.11:ENST00000401392.5:ENST00000536680.5:ENST00000403017.2:ENST00000452187.6:ENST00000472452.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	61	2	3.42056	4.1279699999999995	4.83538	0.0679743	0.0110831	0.164413	0.071519
chr17	14400370	14400470	6683540	0	+	0.55	(0.523,0.58]	chr17	670768	28	INTRON	INTRON	ENSG00000230647	ENSG00000230647.2	ENST00000436469.1:ENST00000655690.1	lncRNA	lncRNA	lncRNA	lncRNA	1	57	2	3.08569	4.12769	5.16969	0.0387762	0.020773	0.131324	0.102713
chr5	38544430	38544530	2641153	0	-	0.49	(0.485,0.523]	chr5	262351	134	INTRON	INTRON	LIFR	ENSG00000113594.10	ENST00000453190.7:ENST00000263409.8:ENST00000503088.1:ENST00000506990.5:ENST00000511561.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	71	2	2.95352	4.127555	5.30159	0.0528263	0.00529578	0.14912	0.044517
chr3	48426416	48426514	1766698	0	-	0.622449	(0.58,1]	chr3	182283	7	INTRON	INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	598	2	3.94354	4.127395	4.31125	5.46838e-4	6.90598e-5	0.0136476	0.00208248
chr12	120876806	120876906	5524052	0	-	0.36	(0.33,0.36]	chr12	544174	413	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	2.7141	4.12688	5.53966	0.0468071	0.0251076	0.156817	0.107672
chr22	28799390	28799459	7782476	0	-	0.492754	(0.485,0.523]	chr22	815916	3	SS3_PROX	SS3_PROX:INTRON	XBP1	ENSG00000100219.17	ENST00000216037.10:ENST00000403532.7:ENST00000405219.7:ENST00000344347.5:ENST00000482720.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	58	2	3.34812	4.1267700000000005	4.90542	0.0561086	0.0117752	0.154188	0.0743709
chr16	85227366	85227466	6515342	0	+	0.53	(0.523,0.58]	chr16	646375	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	78	2	3.35121	4.126715	4.90222	0.0284134	0.0125132	0.114906	0.0765738
chr17	72528229	72528329	6963589	0	-	0.47	(0.45,0.485]	chr17	710377	13	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	4	290	2	3.52417	4.126335	4.7285	0.0108602	8.86748e-5	0.0707085	0.00249666
chr6	129672375	129672475	3259539	0	-	0.48	(0.45,0.485]	chr6	315424	300	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	2.73276	4.126325	5.51989	0.0754102	0.00357389	0.173278	0.0342681
chr2	21017532	21017628	1100607	0	-	0.552083	(0.523,0.58]	chr2	119970	5	INTRON	INTRON	APOB	ENSG00000084674.15	ENST00000233242.5:ENST00000673739.1:ENST00000673882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	57	2	3.03457	4.12592	5.21727	0.0361597	0.0231444	0.127853	0.109883
chr3	38378262	38378359	1445826	0	+	0.43299	(0.419,0.45]	chr3	154249	9	INTRON	INTRON	XYLB	ENSG00000093217.11	ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1:ENST00000472721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	61	2	3.11129	4.125895	5.1405	0.0550015	0.023073	0.153337	0.109758
chr8	30544869	30544967	3789779	0	+	0.55102	(0.523,0.58]	chr8	364946	2	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBPMS	ENSG00000157110.16	ENST00000320203.8:ENST00000339877.8:ENST00000287771.9:ENST00000397323.9:ENST00000517860.5:ENST00000520161.5:ENST00000519647.5:ENST00000520191.5:ENST00000519359.5:ENST00000522694.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	131	2	2.67271	4.125755	5.5788	0.0317474	0.00262418	0.12137	0.0278348
chr10	70879506	70879604	4504861	0	+	0.55102	(0.523,0.58]	chr10	431039	23	UTR3	UTR3:EXON_MRNA	SGPL1	ENSG00000166224.17	ENST00000373202.8	protein_coding	protein_coding	protein_coding	protein_coding	3	229	2	3.4477	4.125735000000001	4.80377	0.0242383	5.76236e-5	0.106588	0.00182014
chr7	158911049	158911149	3523096	0	+	0.59	(0.58,1]	chr7	340276	1	SS3_PROX	SS3_PROX:INTRON	DYNC2I1	ENSG00000126870.16	ENST00000407559.8:ENST00000444851.5:ENST00000467220.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	88	2	3.95688	4.12571	4.29454	0.0305531	0.00681628	0.126768	0.0548279
chr9	120404312	120404412	4383952	0	-	0.42	(0.419,0.45]	chr9	418256	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000479584.2:ENST00000690814.1:ENST00000686842.1:ENST00000691551.1:ENST00000693714.1:ENST00000693386.1:ENST00000688512.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000689012.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000425647.1:ENST00000360822.8:ENST00000693728.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	61	2	2.9727	4.12569	5.27868	0.0457732	0.0303302	0.142336	0.126768
chr17	82869028	82869127	6819561	0	+	0.656566	(0.58,1]	chr17	689342	6	INTRON	INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000683009.1:ENST00000682921.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	53	2	3.03676	4.125265000000001	5.21377	0.0230012	0.0198789	0.102982	0.100864
chr10	132710856	132710956	4618576	0	+	0.68	(0.58,1]	chr10	441180	4	SS5_PROX	SS5_PROX:INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6:ENST00000487614.1:ENST00000498337.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	2.79178	4.125249999999999	5.45872	0.0565563	0.00211999	0.154343	0.0239744
chr11	65430461	65430561	4871646	0	+	0.37	(0.36,0.39]	chr11	468177	78	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	15	1135	2	3.63637	4.125145	4.61392	6.68026e-4	4.03533e-4	0.0152232	0.00752123
chr18	58047320	58047415	7071473	0	+	0.4	(0.39,0.419]	chr18	721085	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5:ENST00000588516.5:ENST00000456986.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	596	2	3.84249	4.125075	4.40766	0.00338161	1.53722e-4	0.0371948	0.00374866
chr10	79218273	79218373	4533544	0	+	0.53	(0.523,0.58]	chr10	432457	16	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.22074	4.125005	5.02927	0.0350559	0.0095202	0.12704	0.0650078
chr10	79204469	79204568	4533403	0	+	0.585859	(0.58,1]	chr10	432445	24	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.29173	4.124935	4.95814	0.0243429	0.0074469	0.106588	0.0553519
chr6	158628007	158628107	3064587	0	+	0.54	(0.523,0.58]	chr6	297759	2	SS3_PROX	SS3_PROX:INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	14	913	2	4.03638	4.12485	4.21332	0.0010158	8.24395e-5	0.0191524	0.00236673
chr16	81575773	81575873	6509051	0	+	0.51	(0.485,0.523]	chr16	645911	799	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.7365	4.1247	5.5129	0.0423471	0.0229047	0.149195	0.102982
chr6	158245492	158245592	3060970	0	+	0.43	(0.419,0.45]	chr6	297572	128	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	3	102	2	2.692	4.124695	5.55739	0.0310506	0.0148836	0.119758	0.0847741
chr2	233164824	233164924	1058274	0	+	0.52	(0.485,0.523]	chr2	115119	4	SS5_PROX	SS5_PROX:INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493078.1:ENST00000472517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	95	2	2.27698	4.124594999999999	5.97221	0.0793007	9.86421e-4	0.176433	0.0140716
chr10	47536577	47536677	4680548	0	-	0.39	(0.36,0.39]	chr10	446443	127	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	1	61	2	2.79528	4.12444	5.4536	0.0413701	0.0321864	0.148333	0.121593
chr2	222863123	222863220	1037721	0	+	0.381443	(0.36,0.39]	chr2	113175	10	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	60	2	3.05132	4.124225	5.19713	0.0462258	0.0252548	0.143138	0.114966
chr16	8743318	8743417	6381834	0	+	0.464646	(0.45,0.485]	chr16	631181	45	INTRON	INTRON	ABAT	ENSG00000183044.12	ENST00000564714.5:ENST00000268251.13:ENST00000568847.5:ENST00000561870.5:ENST00000396600.6:ENST00000566590.5:ENST00000565016.5:ENST00000567812.5:ENST00000425191.6:ENST00000569156.5:ENST00000562115.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	62	2	3.60494	4.1242	4.64346	0.0850039	0.00682726	0.181766	0.0525149
chr6	158038944	158039043	3059887	0	+	0.535354	(0.523,0.58]	chr6	297390	49	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	77	2	2.52319	4.12403	5.72487	0.0287266	0.0163679	0.123764	0.0875379
chr1	29239411	29239511	78402	0	+	0.61	(0.58,1]	chr1	8914	23	INTRON	INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.48503	4.1239349999999995	4.76284	0.0471737	0.006811	0.143232	0.0524379
chr13	113612852	113612951	5659129	0	+	0.676768	(0.58,1]	chr13	555781	14	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	54	2	3.48503	4.1239349999999995	4.76284	0.0471737	0.006811	0.143232	0.0524379
chr9	133804583	133804683	4428437	0	-	0.6	(0.58,1]	chr9	423268	64	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	2.15496	4.12376	6.09256	0.0548868	0.00452436	0.168717	0.0436138
chr8	38798379	38798479	3802546	0	+	0.45	(0.419,0.45]	chr8	365849	92	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5:ENST00000522544.5:ENST00000524354.5:ENST00000523239.5:ENST00000317827.9:ENST00000276520.12:ENST00000520973.5:ENST00000521528.6:ENST00000521935.5:ENST00000523834.1:ENST00000521154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	62	2	2.7644	4.12375	5.4831	0.0447981	0.0345118	0.154539	0.126025
chr7	79359572	79359672	3625594	0	-	0.39	(0.36,0.39]	chr7	349234	78	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000628997.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	60	2	3.09749	4.123535	5.14958	0.0493212	0.023009	0.146207	0.109581
chr13	111185425	111185525	5651302	0	+	0.46	(0.45,0.485]	chr13	554737	2	SS5_PROX	SS5_PROX:INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000449979.5:ENST00000491775.5:ENST00000469877.5:ENST00000466143.5:ENST00000218789.9:ENST00000375736.8:ENST00000467053.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	61	2	3.53579	4.123445	4.7111	0.0781398	0.00804225	0.175203	0.0582806
chr10	75709158	75709258	4523255	0	+	0.22	[0,0.29]	chr10	432271	612	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	109	2	2.77447	4.123095	5.47172	0.0158465	0.00668085	0.0859576	0.0517753
chr7	78991211	78991311	3621904	0	-	0.36	(0.33,0.36]	chr7	349212	439	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000440555.2:ENST00000636989.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	3.03916	4.1230150000000005	5.20687	0.041040600000000003	0.0250322	0.136289	0.114418
chr17	57440589	57440689	6761616	0	+	0.49	(0.485,0.523]	chr17	682129	81	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	116	2	2.85225	4.1229700000000005	5.39369	0.0275819	0.0059712	0.112782	0.0480609
chr2	3330827	3330926	1081420	0	-	0.535354	(0.523,0.58]	chr2	117645	104	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	57	2	3.229	4.122885	5.01677	0.0482765	0.0152072	0.144601	0.0861813
chr9	135839758	135839857	4431144	0	-	0.636364	(0.58,1]	chr9	423507	118	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.84993	4.122695	5.39546	0.0297842	0.0168207	0.126591	0.0884836
chr17	82004643	82004743	6815343	0	+	0.63	(0.58,1]	chr17	688641	4	EXON_MRNA	EXON_MRNA:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	348	2	3.52361	4.1226650000000005	4.72172	0.00133472	2.47006e-4	0.0223284	0.00526245
chr7	112115114	112115214	3691659	0	-	0.42	(0.419,0.45]	chr7	354969	1106	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	61	2	2.92337	4.12266	5.32195	0.0431627	0.0333415	0.138403	0.133139
chr8	133288731	133288831	4084212	0	-	0.57	(0.523,0.58]	chr8	388355	3	SS3_PROX	SS3_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1:ENST00000674839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	98	2	3.90397	4.122574999999999	4.34118	0.0372357	0.0110124	0.139793	0.0708586
chr2	238439384	238439483	1074077	0	+	0.575758	(0.523,0.58]	chr2	116441	30	INTRON	INTRON	ASB1	ENSG00000065802.12	ENST00000463352.5:ENST00000264607.9:ENST00000409297.1:ENST00000438264.5:ENST00000491653.1:ENST00000468122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	57	2	2.98158	4.122450000000001	5.26332	0.0337698	0.0258432	0.124319	0.116361
chr21	37495204	37495300	7620272	0	+	0.5	(0.485,0.523]	chr21	796103	17	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000398960.7:ENST00000646548.1:ENST00000645424.1:ENST00000643854.1:ENST00000642309.1:ENST00000645774.1:ENST00000398956.2:ENST00000643808.1:ENST00000644367.1:ENST00000646224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	57	2	3.12385	4.1223849999999995	5.12092	0.0414411	0.0193526	0.136301	0.0994526
chr22	24603527	24603627	7698269	0	+	0.55	(0.523,0.58]	chr22	805779	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GGT1	ENSG00000100031.19	ENST00000456869.5:ENST00000411974.5:ENST00000412658.5:ENST00000445029.5:ENST00000400382.6:ENST00000419133.5:ENST00000452551.5:ENST00000438643.6:ENST00000412898.5:ENST00000400380.5:ENST00000455483.5:ENST00000430289.5	protein_coding	protein_coding	protein_coding	protein_coding	2	96	2	2.43559	4.12216	5.80873	0.0628646	0.00145893	0.160778	0.0184991
chr2	240619630	240619729	1075139	0	+	0.565657	(0.523,0.58]	chr2	116654	2	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.80981	4.1219600000000005	5.43411	0.0364868	0.026041	0.139793	0.109673
chr17	4850221	4850321	6672055	0	+	0.48	(0.45,0.485]	chr17	668609	162	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	58	2	3.08169	4.121589999999999	5.16149	0.0427653	0.0220375	0.13762	0.10754
chr16	85230665	85230765	6515375	0	+	0.54	(0.523,0.58]	chr16	646377	29	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	165	2	3.87732	4.121535	4.36575	0.00469354	0.00318505	0.0447173	0.0316631
chr3	32864019	32864119	1439332	0	+	0.41	(0.39,0.419]	chr3	153401	447	INTRON	INTRON	TRIM71	ENSG00000206557.6	ENST00000383763.6	protein_coding	protein_coding	protein_coding	protein_coding	2	81	2	2.67784	4.12151	5.56518	0.027797	0.0233188	0.112962	0.110098
chr19	946907	947007	7185315	0	+	0.44	(0.419,0.45]	chr19	730741	138	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	84	2	2.30548	4.121335	5.93719	0.04996	0.0176643	0.161395	0.0909046
chr3	152406975	152407074	1599772	0	+	0.363636	(0.36,0.39]	chr3	168998	104	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5:ENST00000545754.5:ENST00000357472.7:ENST00000324196.9:ENST00000498502.5:ENST00000463374.5:ENST00000485910.5:ENST00000465907.6:ENST00000492948.5:ENST00000485509.5:ENST00000464596.5	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.14223	4.121315	5.1004	0.0526991	0.0209989	0.14912	0.103249
chrX	51868555	51868655	7882279	0	+	0.39	(0.36,0.39]	chrX	826505	651	INTRON	INTRON	MAGED1	ENSG00000179222.18	ENST00000375772.7	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.14223	4.121315	5.1004	0.0526991	0.0209989	0.14912	0.103249
chr18	76403081	76403180	7179150	0	-	0.323232	(0.29,0.33]	chr18	730080	224	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	2.72257	4.121145	5.51972	0.0208628	0.0191	0.099407	0.0991037
chr9	37970727	37970827	4302793	0	-	0.48	(0.45,0.485]	chr9	411604	143	INTRON	INTRON	SHB	ENSG00000107338.10	ENST00000377707.4	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.81608	4.120975	5.42587	0.0375071	0.0290571	0.139823	0.116079
chr2	48353448	48353548	793241	0	+	0.38	(0.36,0.39]	chr2	90414	63	INTRON	INTRON	FOXN2	ENSG00000170802.17	ENST00000413569.5:ENST00000340553.8	protein_coding	protein_coding	protein_coding	protein_coding	3	243	2	3.8893	4.12067	4.35204	0.00641386	0.00120025	0.0529785	0.016121
chr2	152593743	152593843	928056	0	+	0.42	(0.419,0.45]	chr2	103106	123	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14:ENST00000492942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	228	2	3.95311	4.11987	4.28663	0.00762876	0.0011322	0.0581272	0.0154908
chr2	101822727	101822827	861886	0	+	0.45	(0.419,0.45]	chr2	97540	227	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5:ENST00000627726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	82	2	2.6465	4.119825	5.59315	0.029494	0.0255963	0.116079	0.115966
chr9	34202453	34202553	4140960	0	+	0.45	(0.419,0.45]	chr9	393819	107	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	2.57738	4.11975	5.66212	0.0294759	0.0266819	0.125644	0.111563
chr19	1170140	1170239	7305754	0	-	0.656566	(0.58,1]	chr19	753058	11	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	2	132	2	3.85844	4.119615	4.38079	0.00830865	5.47609e-4	0.061139	0.0093303
chr16	67914783	67914882	6473546	0	+	0.565657	(0.523,0.58]	chr16	642897	47	INTRON	INTRON	PSKH1	ENSG00000159792.10	ENST00000291041.6	protein_coding	protein_coding	protein_coding	protein_coding	2	152	2	3.93759	4.11958	4.30157	0.0103671	0.00101591	0.0686683	0.0143256
chr14	95317419	95317519	6048823	0	-	0.47	(0.45,0.485]	chr14	593433	98	INTRON	INTRON	CLMN	ENSG00000165959.12	ENST00000298912.9:ENST00000553733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	60	2	3.46316	4.119435	4.77571	0.0719884	0.00952494	0.168159	0.0650078
chr1	43556832	43556932	107007	0	+	0.62	(0.58,1]	chr1	13192	25	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	2.97713	4.119255	5.26138	0.0226795	0.021217	0.108193	0.0996078
chr9	133855985	133856085	4428958	0	-	0.57	(0.523,0.58]	chr9	423304	213	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	2.48104	4.11923	5.75742	0.0313926	0.0155135	0.127822	0.0849828
chr17	38919575	38919675	6730077	0	+	0.63	(0.58,1]	chr17	676475	9	UTR3	UTR3:EXON_MRNA	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000318008.11:ENST00000435347.7	protein_coding	protein_coding	protein_coding	protein_coding	2	93	2	2.87663	4.11908	5.36153	0.0241649	0.00273899	0.106588	0.028553
chr7	137967773	137967873	3720380	0	-	0.57	(0.523,0.58]	chr7	357307	340	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.61478	4.11868	5.62258	0.052707	0.0193313	0.167062	0.0954446
chr5	32158862	32158962	2630503	0	-	0.34	(0.33,0.36]	chr5	261026	146	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	84	2	3.12716	4.11864	5.11012	0.04702	0.00812378	0.143232	0.0587857
chr5	74822480	74822579	2692281	0	-	0.424242	(0.419,0.45]	chr5	265977	81	INTRON	INTRON	FAM169A	ENSG00000198780.13	ENST00000389156.9:ENST00000510496.5:ENST00000687041.1:ENST00000514215.5:ENST00000510609.5:ENST00000513277.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	61	2	3.1968	4.118615	5.04043	0.0625897	0.0193853	0.160305	0.0994526
chr1	214005472	214005572	339533	0	+	0.35	(0.33,0.36]	chr1	38102	2	SS5_PROX	SS5_PROX:INTRON	PROX1	ENSG00000117707.16	ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.1778	4.1185	5.0592	0.0504445	0.0187975	0.148216	0.0980631
chr2	54603119	54603218	799748	0	+	0.575758	(0.523,0.58]	chr2	90808	35	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7:ENST00000333896.5	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	2.70025	4.11845	5.53665	0.0763549	0.00291382	0.174544	0.0298557
chr8	38767896	38767995	3802234	0	+	0.50505	(0.485,0.523]	chr8	365828	101	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	431	2	3.29905	4.11843	4.93781	0.00711374	3.93338e-5	0.0560048	0.00137739
chr2	54039659	54039759	795597	0	+	0.55	(0.523,0.58]	chr2	90708	644	INTRON	INTRON	ACYP2	ENSG00000170634.13	ENST00000458030.3:ENST00000422521.2:ENST00000607452.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	57	2	3.27377	4.11787	4.96197	0.0521137	0.0137592	0.148503	0.0814923
chr17	72528627	72528727	6963593	0	-	0.58	(0.523,0.58]	chr17	710377	17	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	3	92	2	2.5439600000000002	4.117765	5.69157	0.0173698	0.0172851	0.0928044	0.0897247
chr18	9927170	9927268	7018346	0	+	0.387755	(0.36,0.39]	chr18	716805	18	INTRON	INTRON	VAPA	ENSG00000101558.14	ENST00000400000.7:ENST00000577901.5:ENST00000340541.4:ENST00000585042.5:ENST00000584796.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	60	2	3.18563	4.11756	5.04949	0.0563927	0.0191961	0.154188	0.0994526
chr2	15339435	15339534	1091719	0	-	0.383838	(0.36,0.39]	chr2	118940	83	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10:ENST00000442506.5	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.9032	4.1171299999999995	5.33106	0.0383628	0.0337607	0.133139	0.131324
chr1	8700957	8701056	394564	0	-	0.40404	(0.39,0.419]	chr1	45065	442	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000468247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	81	2	2.49838	4.117065	5.73575	0.0336993	0.0215144	0.133139	0.100612
chr8	133291011	133291110	4084235	0	-	0.555556	(0.523,0.58]	chr8	388356	22	INTRON	INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1:ENST00000674839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	93	2	3.79814	4.117055000000001	4.43597	0.0313935	0.0132922	0.127822	0.0787251
chr15	101442258	101442358	6363979	0	-	0.37	(0.36,0.39]	chr15	627280	98	INTRON	INTRON	PCSK6	ENSG00000140479.18	ENST00000398185.6:ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000611967.4:ENST00000615296.4:ENST00000559417.2:ENST00000331826.12:ENST00000678918.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	84	2	3.03688	4.117005	5.19713	0.0462258	0.0105366	0.143138	0.0691536
chr17	82005042	82005142	6815347	0	+	0.69	(0.58,1]	chr17	688641	8	EXON_MRNA	EXON_MRNA:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	591	2	3.57208	4.11696	4.66184	5.47855e-4	1.3285e-4	0.0136476	0.00337193
chr10	18560265	18560365	4642331	0	-	0.35	(0.33,0.36]	chr10	443321	79	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	3.29545	4.1166100000000005	4.93777	0.0331843	0.0144674	0.123484	0.0833845
chr19	41326336	41326436	7381062	0	-	0.52	(0.485,0.523]	chr19	765964	233	INTRON	INTRON	TGFB1	ENSG00000105329.11	ENST00000598758.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	58	2	2.79862	4.116575	5.43453	0.0375966	0.0258944	0.139924	0.109555
chrX	47219405	47219505	7877797	0	+	0.62	(0.58,1]	chrX	825682	3	SS5_PROX	SS5_PROX:INTRON	CDK16	ENSG00000102225.17	ENST00000517997.5:ENST00000517479.1:ENST00000457458.6:ENST00000522883.1:ENST00000520295.5:ENST00000357227.9:ENST00000519758.5:ENST00000520893.5:ENST00000517426.5:ENST00000522234.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	134	2	4.04904	4.11645	4.18386	0.0056478	9.90719e-4	0.0495171	0.0141138
chr16	81478380	81478479	6508075	0	+	0.545455	(0.523,0.58]	chr16	645906	325	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.68276	4.11644	5.55012	0.0464998	0.0217068	0.156036	0.100615
chr16	81666015	81666112	6509966	0	+	0.56701	(0.523,0.58]	chr16	645960	17	UTR3	UTR3:EXON_MRNA:INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8:ENST00000566462.2	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.68276	4.11644	5.55012	0.0464998	0.0217068	0.156036	0.100615
chr1	31415772	31415872	80082	0	+	0.48	(0.45,0.485]	chr1	9156	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SERINC2	ENSG00000168528.12	ENST00000373710.5:ENST00000536859.5:ENST00000487207.5:ENST00000373709.8:ENST00000536384.2:ENST00000491976.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	176	2	3.90756	4.116235	4.32491	0.0418883	0.00537153	0.149021	0.0481897
chr9	136008328	136008428	4432155	0	-	0.64	(0.58,1]	chr9	423617	19	UTR3	UTR3:EXON_MRNA	NACC2	ENSG00000148411.8	ENST00000277554.4:ENST00000371753.5	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.60807	4.11605	4.62403	0.0578275	0.00495688	0.154343	0.0425347
chr1	228141633	228141733	357999	0	+	0.63	(0.58,1]	chr1	40396	1	CDS_START	CDS_START:CDS:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000469973.1:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	88	2	2.63881	4.116025	5.59324	0.0370835	0.0014734	0.12995	0.0185589
chr1	44017438	44017537	459227	0	-	0.636364	(0.58,1]	chr1	55265	2	INTRON	INTRON	SLC6A9	ENSG00000196517.13	ENST00000372306.7:ENST00000372310.8:ENST00000673836.1:ENST00000475075.6:ENST00000492434.6:ENST00000489764.1:ENST00000466926.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	64	2	2.40217	4.115905	5.82964	0.100879	7.58111e-4	0.196131	0.0117078
chr3	13200425	13200525	1691146	0	-	0.43	(0.419,0.45]	chr3	176566	359	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	2	102	2	2.18453	4.1158850000000005	6.04724	0.101185	0.00142238	0.196131	0.0181715
chr5	1056481	1056581	2608385	0	-	0.63	(0.58,1]	chr5	259540	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10:ENST00000634447.1	protein_coding	protein_coding	protein_coding	protein_coding	2	142	2	3.89258	4.11588	4.33918	0.00307476	0.00229214	0.03541	0.0253494
chr7	47360794	47360894	3587399	0	-	0.52	(0.485,0.523]	chr7	346030	141	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	2.5366	4.115685	5.69477	0.0953348	0.00203227	0.189038	0.0232814
chr2	111299128	111299227	1251618	0	-	0.525253	(0.523,0.58]	chr2	134852	54	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000673962.1:ENST00000674132.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000662889.1:ENST00000665096.1:ENST00000674092.1:ENST00000673958.1:ENST00000673770.1:ENST00000673961.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000656303.1:ENST00000666367.1:ENST00000666652.1:ENST00000669050.1:ENST00000667218.1:ENST00000656067.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000673700.1:ENST00000443467.6:ENST00000451884.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000655573.1:ENST00000656416.1:ENST00000662384.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1	lncRNA	lncRNA	lncRNA	lncRNA	3	92	2	2.57213	4.11481	5.65749	0.0182707	0.0162664	0.0921579	0.0905283
chr7	74365210	74365309	3390941	0	+	0.555556	(0.523,0.58]	chr7	327282	5	INTRON	INTRON	CLIP2	ENSG00000106665.16	ENST00000223398.11:ENST00000361545.9	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	2.64274	4.11477	5.5868	0.0221922	0.020474	0.108193	0.0979776
chr8	128039804	128039883	3920279	0	+	0.443038	(0.419,0.45]	chr8	374318	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	2	83	2	2.86526	4.114605	5.36395	0.0407485	0.0160871	0.135868	0.0896852
chr12	109450320	109450418	5494357	0	-	0.632653	(0.58,1]	chr12	540539	18	UTR3	UTR3:EXON_MRNA	KCTD10	ENSG00000110906.13	ENST00000228495.11:ENST00000540089.5:ENST00000440541.6:ENST00000545759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	2.71042	4.114275	5.51813	0.0396128	0.013519	0.143388	0.0792526
chr17	952706	952806	6826362	0	-	0.65	(0.58,1]	chr17	690074	194	INTRON	INTRON	NXN	ENSG00000167693.17	ENST00000336868.8:ENST00000575171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	55	2	2.71042	4.114275	5.51813	0.0396128	0.013519	0.143388	0.0792526
chr17	17687248	17687348	6688907	0	+	0.59	(0.58,1]	chr17	671338	23	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.71042	4.114275	5.51813	0.0396128	0.013519	0.143388	0.0792526
chr18	2748246	2748346	7002054	0	+	0.48	(0.45,0.485]	chr18	715755	2	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000693213.1:ENST00000577880.5:ENST00000584897.5:ENST00000583441.2:ENST00000690757.1:ENST00000686763.1:ENST00000686864.1:ENST00000688708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	72	2	2.94003	4.114245	5.28846	0.0561701	0.00612862	0.154188	0.0489549
chr12	24017825	24017925	5389209	0	-	0.5	(0.485,0.523]	chr12	528209	669	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000646273.1:ENST00000659413.1:ENST00000536729.2:ENST00000446891.7	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.6472	4.1141000000000005	4.581	0.085711	0.00579534	0.181766	0.0472203
chr13	50036863	50036963	5714006	0	-	0.37	(0.36,0.39]	chr13	560609	48	INTRON	INTRON	DLEU2	ENSG00000231607.14	ENST00000621282.4:ENST00000688690.1:ENST00000668305.1:ENST00000425586.5:ENST00000686946.1	lncRNA	lncRNA	lncRNA	lncRNA	1	73	2	2.77391	4.1134699999999995	5.45303	0.0750023	0.00525731	0.172839	0.044445
chr22	47153998	47154098	7748939	0	+	0.62	(0.58,1]	chr22	812256	420	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	74	2	2.27185	4.113195	5.95454	0.0433824	0.0059453	0.152119	0.0506158
chr1	204124857	204124957	322588	0	+	0.61	(0.58,1]	chr1	36331	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000618875.4:ENST00000272193.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	2.50987	4.113075	5.71628	0.0865901	0.00104668	0.182221	0.0146403
chr7	67090691	67090791	3384937	0	+	0.44	(0.419,0.45]	chr7	326589	68	INTRON	INTRON	TYW1	ENSG00000198874.14	ENST00000359626.10:ENST00000361660.8:ENST00000495971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	61	2	3.23773	4.1127	4.98767	0.0669167	0.0178095	0.16272	0.0943752
chr11	64144463	64144562	5049022	0	-	0.585859	(0.58,1]	chr11	490257	177	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	73	2	3.16413	4.112415	5.0607	0.029633	0.00515052	0.116079	0.0436542
chr1	1032911	1033010	1044	0	+	0.787879	(0.58,1]	chr1	166	101	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	2.91446	4.112410000000001	5.31036	0.0464528	0.00312721	0.143232	0.0311915
chr4	165389931	165390031	2162534	0	+	0.41	(0.39,0.419]	chr4	219073	32	INTRON	INTRON	CPE	ENSG00000109472.14	ENST00000513982.5:ENST00000402744.9	protein_coding	protein_coding	protein_coding	protein_coding	3	104	2	2.89482	4.112265000000001	5.32971	0.0390381	0.00895433	0.131575	0.0621577
chr8	22392630	22392729	3770275	0	+	0.666667	(0.58,1]	chr8	362727	128	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	2	70	2	2.74604	4.112215	5.47839	0.015009	0.0145198	0.0852854	0.0823104
chr2	75555683	75555783	1194736	0	-	0.53	(0.523,0.58]	chr2	129875	291	INTRON	INTRON	EVA1A	ENSG00000115363.14	ENST00000485891.1:ENST00000490746.5:ENST00000233712.5:ENST00000393913.8:ENST00000410113.5:ENST00000410071.5:ENST00000432649.5:ENST00000486696.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	58	2	3.44013	4.111985	4.78384	0.0663135	0.00938609	0.162385	0.064735
chr1	161223099	161223199	607256	0	-	0.6	(0.58,1]	chr1	72273	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	APOA2	ENSG00000158874.11	ENST00000463812.1:ENST00000468465.5:ENST00000367990.7:ENST00000481413.1:ENST00000481511.5:ENST00000470459.6:ENST00000464492.5:ENST00000491350.1:ENST00000463273.5:ENST00000469730.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	25	1503	2	3.78105	4.111925	4.4428	1.79683e-4	6.43986e-5	0.00754872	0.00197219
chr12	120998393	120998486	5341122	0	+	0.473118	(0.45,0.485]	chr12	521576	2	INTRON	INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000560968.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	79	2	2.92407	4.1119	5.29973	0.035042	0.0124115	0.12704	0.0765738
chr16	68319433	68319533	6476836	0	+	0.51	(0.485,0.523]	chr16	643277	5	INTRON	INTRON	PRMT7	ENSG00000132600.18	ENST00000686904.1:ENST00000562381.7:ENST00000689486.1:ENST00000693200.1:ENST00000685141.1:ENST00000562050.6:ENST00000565745.6:ENST00000685109.1:ENST00000689637.1:ENST00000692867.1:ENST00000693670.1:ENST00000692760.1:ENST00000687654.1:ENST00000441236.3:ENST00000675132.1:ENST00000688470.1:ENST00000691833.1:ENST00000690432.1:ENST00000691804.1:ENST00000691961.1:ENST00000690932.1:ENST00000692632.1:ENST00000687444.1:ENST00000692283.1:ENST00000569571.5:ENST00000692621.1:ENST00000566341.5:ENST00000686053.1:ENST00000692966.1:ENST00000691663.1:ENST00000564050.6:ENST00000449359.7:ENST00000569047.7:ENST00000693309.1:ENST00000690311.1:ENST00000565356.5:ENST00000564441.6:ENST00000563520.5:ENST00000687558.1:ENST00000339507.9:ENST00000688969.1:ENST00000568975.5:ENST00000563562.5:ENST00000561806.5:ENST00000562456.1:ENST00000566430.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	69	2	2.77877	4.11183	5.44489	0.0682166	0.00377098	0.164526	0.0353672
chr1	52914830	52914930	485580	0	-	0.58	(0.523,0.58]	chr1	57727	3	SS5_PROX	SS5_PROX:INTRON	ECHDC2	ENSG00000121310.17	ENST00000536120.5:ENST00000371522.9:ENST00000460612.5:ENST00000371520.5:ENST00000358358.9:ENST00000476477.6:ENST00000467988.2:ENST00000488268.5:ENST00000544365.5:ENST00000495920.5:ENST00000544531.5:ENST00000480312.6:ENST00000542552.1:ENST00000474789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	512	2	4.01605	4.11176	4.20747	0.0013825	3.20678e-4	0.0227183	0.00636761
chr1	228155259	228155358	358139	0	+	0.646465	(0.58,1]	chr1	40434	49	INTRON	INTRON	GJC2	ENSG00000198835.4	ENST00000366714.3	protein_coding	protein_coding	protein_coding	protein_coding	2	70	2	2.7859	4.11171	5.43752	0.0156166	0.0136245	0.0849828	0.0811816
chr11	12814423	12814523	4803046	0	+	0.65	(0.58,1]	chr11	460563	496	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	2.55596	4.11147	5.66698	0.0534085	0.0102927	0.167062	0.0684871
chr20	49636959	49637052	7575395	0	-	0.612903	(0.58,1]	chr20	791489	1	SS5_PROX	SS5_PROX:INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.91493	4.1112	5.30747	0.0259506	0.0196049	0.116361	0.0955413
chr4	143337017	143337102	2136941	0	+	0.682353	(0.58,1]	chr4	217042	4	UTR5	UTR5:EXON_MRNA	GAB1	ENSG00000109458.9	ENST00000262995.8:ENST00000262994.9	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.91493	4.1112	5.30747	0.0259506	0.0196049	0.116361	0.0955413
chr9	134335542	134335642	4260778	0	+	0.62	(0.58,1]	chr9	406311	85	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	53	2	2.91493	4.1112	5.30747	0.0259506	0.0196049	0.116361	0.0955413
chrX	9567642	9567741	7843476	0	+	0.545455	(0.523,0.58]	chrX	822423	67	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	57	2	3.31719	4.111095000000001	4.905	0.0563605	0.0124719	0.154188	0.0765738
chr19	1173223	1173323	7305785	0	-	0.72	(0.58,1]	chr19	753059	1	SS5_PROX	SS5_PROX:INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	3.19823	4.110685	5.02314	0.0287301	0.00638322	0.115888	0.0501889
chr5	1464035	1464135	2609363	0	-	0.51	(0.485,0.523]	chr5	259789	2	SS3_PROX	SS3_PROX:INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000503252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	74	2	3.1954	4.110565	5.02573	0.0364043	0.00985879	0.128173	0.0664239
chr7	127810269	127810369	3469819	0	+	0.41	(0.39,0.419]	chr7	335386	23	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	3.59071	4.11054	4.63037	0.0963077	0.00792247	0.189169	0.057762
chr19	943316	943416	7185279	0	+	0.53	(0.523,0.58]	chr19	730741	102	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	57	2	2.86937	4.110305	5.35124	0.0324455	0.0295772	0.130548	0.116079
chr2	72966836	72966936	1188460	0	-	0.55	(0.523,0.58]	chr2	128793	2	SS5_PROX	SS5_PROX:INTRON	SFXN5	ENSG00000144040.13	ENST00000272433.7:ENST00000461352.5:ENST00000474528.5:ENST00000495208.5:ENST00000482289.5:ENST00000490056.5:ENST00000411783.5:ENST00000410065.5:ENST00000482542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	57	2	2.86937	4.110305	5.35124	0.0324455	0.0295772	0.130548	0.116079
chr20	8274901	8275001	7428011	0	+	0.34	(0.33,0.36]	chr20	773686	181	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	79	2	2.53891	4.11	5.68109	0.0300873	0.0201622	0.126768	0.0973366
chr11	2688498	2688598	4972196	0	-	0.6	(0.58,1]	chr11	481197	803	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	3	85	2	2.26544	4.10999	5.95454	0.0284795	0.0059453	0.123012	0.0506158
chr16	89293493	89293592	6659740	0	-	0.717172	(0.58,1]	chr16	666648	13	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	87	2	2.86736	4.10975	5.35214	0.0181452	0.0063518	0.0921579	0.0501889
chr5	93588644	93588744	2482662	0	+	0.8	(0.58,1]	chr5	247302	2	SS5_PROX	SS5_PROX:INTRON	NR2F1	ENSG00000175745.14	ENST00000327111.8:ENST00000615873.1:ENST00000647447.1	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.78186	4.1096900000000005	5.43752	0.0342923	0.0156166	0.13449	0.0849828
chr17	55324110	55324207	6757711	0	+	0.484536	(0.45,0.485]	chr17	681735	34	UTR3	UTR3:EXON_MRNA	HLF	ENSG00000108924.14	ENST00000226067.10	protein_coding	protein_coding	protein_coding	protein_coding	2	80	2	2.28891	4.109625	5.93034	0.0479351	0.0130794	0.159092	0.0782396
chr11	115286303	115286403	5128948	0	-	0.43	(0.419,0.45]	chr11	498102	296	INTRON	INTRON	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000541434.5:ENST00000543540.5:ENST00000543249.1:ENST00000540951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	82	2	2.42833	4.109605	5.79088	0.0395807	0.022052	0.143388	0.101502
chr1	178175357	178175457	287354	0	+	0.4	(0.39,0.419]	chr1	32929	495	INTRON	INTRON	RASAL2	ENSG00000075391.18	ENST00000367649.8:ENST00000465723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	3.45562	4.109095	4.76257	0.0822354	0.0107538	0.179396	0.0702857
chr11	77665633	77665731	5083873	0	-	0.316327	(0.29,0.33]	chr11	494700	58	UTR3	UTR3:EXON_MRNA	RSF1	ENSG00000048649.14	ENST00000308488.11	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	2.9213	4.10878	5.29626	0.0537281	0.005619	0.150759	0.0462026
chr20	4857604	4857704	7517117	0	-	0.57	(0.523,0.58]	chr20	784813	4	SS3_PROX	SS3_PROX:INTRON	SLC23A2	ENSG00000089057.15	ENST00000379333.5:ENST00000338244.6	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	3.01567	4.1083549999999995	5.20104	0.0482042	0.00648051	0.144601	0.0503748
chr8	9770362	9770462	3754879	0	+	0.3	(0.29,0.33]	chr8	360880	1	SS5_PROX	SS5_PROX:INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.58669	4.108264999999999	5.62984	0.0563947	0.0174273	0.171933	0.0901531
chr1	235404484	235404584	364914	0	+	0.48	(0.45,0.485]	chr1	41205	25	INTRON	INTRON	TBCE	ENSG00000285053.1:ENSG00000284770.2	ENST00000644055.1:ENST00000645655.1:ENST00000647428.1:ENST00000643418.1:ENST00000646624.1:ENST00000647186.1:ENST00000646528.1:ENST00000645351.1:ENST00000643410.1:ENST00000645205.1:ENST00000645836.1:ENST00000642503.1:ENST00000646281.1:ENST00000645069.1:ENST00000644680.1:ENST00000645578.1:ENST00000642431.1:ENST00000644604.1:ENST00000651186.1:ENST00000643125.1:ENST00000406207.5:ENST00000642463.1:ENST00000645899.1:ENST00000647233.1:ENST00000642926.1:ENST00000644578.1:ENST00000647418.1:ENST00000645372.1:ENST00000645582.1:ENST00000643994.1:ENST00000647407.1:ENST00000642610.2:ENST00000644037.1:ENST00000646463.1:ENST00000366601.8:ENST00000643524.1:ENST00000646536.1:ENST00000643142.1:ENST00000644838.1:ENST00000646286.1:ENST00000646186.1:ENST00000643615.1:ENST00000543662.4:ENST00000646848.1:ENST00000647332.1:ENST00000647489.1:ENST00000644625.1:ENST00000646384.1:ENST00000645551.1:ENST00000646821.1:ENST00000472011.6:ENST00000643238.1:ENST00000646104.1:ENST00000645662.1:ENST00000643993.1:ENST00000645964.1:ENST00000642339.1:ENST00000644217.1:ENST00000642372.1:ENST00000646929.1:ENST00000644265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	58	2	2.87326	4.108135	5.34301	0.033576	0.0328801	0.133139	0.122593
chr3	71320014	71320114	1828645	0	-	0.46	(0.45,0.485]	chr3	188221	9	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000648783.1:ENST00000650156.1:ENST00000649133.1:ENST00000493010.2:ENST00000649145.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	58	2	2.87326	4.108135	5.34301	0.033576	0.0328801	0.133139	0.122593
chr7	149615403	149615503	3733328	0	-	0.43	(0.419,0.45]	chr7	358677	514	INTRON	INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5:ENST00000481762.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	65	2	3.59354	4.108135	4.62273	0.103601	0.00820853	0.197541	0.0592025
chr19	735064	735110	7184601	0	+	0.630435	(0.58,1]	chr19	730568	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PALM	ENSG00000099864.18	ENST00000338448.10:ENST00000264560.11:ENST00000589012.5:ENST00000593172.5:ENST00000633534.1:ENST00000592155.5:ENST00000590161.2:ENST00000587513.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	150	2	3.68463	4.107495	4.53036	0.00404771	0.00203497	0.0371291	0.0283511
chr16	84757219	84757319	6514404	0	+	0.34	(0.33,0.36]	chr16	646296	112	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000540269.6:ENST00000563892.5:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000569038.5:ENST00000570053.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	59	2	3.26334	4.107485	4.95163	0.0583482	0.0156643	0.155373	0.0878971
chr5	109811474	109811574	2504605	0	+	0.3	(0.29,0.33]	chr5	248901	68	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5:ENST00000502261.5:ENST00000508043.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	70	2	3.02123	4.106695	5.19216	0.0461219	0.00712176	0.143055	0.0541241
chr20	31548175	31548270	7453172	0	+	0.4	(0.39,0.419]	chr20	775703	2	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HM13	ENSG00000101294.18	ENST00000335574.10:ENST00000674240.1:ENST00000340852.9:ENST00000398174.9:ENST00000649820.1:ENST00000466766.2:ENST00000650367.1:ENST00000496438.5:ENST00000344042.5:ENST00000649374.1:ENST00000460225.5:ENST00000469126.5:ENST00000492709.5:ENST00000469097.5:ENST00000487964.5:ENST00000464508.1:ENST00000649583.1:ENST00000479096.1:ENST00000464661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	65	2	3.65379	4.10661	4.55943	0.104562	0.0068472	0.19835	0.052649
chr3	65474637	65474736	1810207	0	-	0.373737	(0.36,0.39]	chr3	187239	38	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5:ENST00000470990.5:ENST00000479287.1:ENST00000464060.5:ENST00000476703.1:ENST00000476403.5:ENST00000496734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	78	2	3.16425	4.106590000000001	5.04893	0.0430514	0.0125348	0.138389	0.0765738
chr3	124746578	124746678	1555438	0	+	0.47	(0.45,0.485]	chr3	164821	26	UTR3	UTR3:EXON_MRNA	UMPS	ENSG00000114491.14	ENST00000232607.7	protein_coding	protein_coding	protein_coding	protein_coding	3	209	2	3.86649	4.1064050000000005	4.34632	0.0053526	0.00110681	0.0480663	0.0152193
chr6	170396876	170396975	3076548	0	+	0.59596	(0.58,1]	chr6	299192	9	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	2.45703	4.106045	5.75506	0.0933945	9.38062e-4	0.188571	0.0135546
chr10	79146769	79146869	4532824	0	+	0.59	(0.58,1]	chr10	432432	66	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	2.95313	4.10522	5.25731	0.0435972	0.00358178	0.139245	0.0342681
chr5	1466448	1466548	2609388	0	-	0.53	(0.523,0.58]	chr5	259791	3	SS5_PROX	SS5_PROX:INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000503252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	78	2	3.37594	4.105090000000001	4.83424	0.0272868	0.0144272	0.112327	0.0833845
chr3	149035596	149035694	1938499	0	-	0.44898	(0.419,0.45]	chr3	197152	2	INTRON	INTRON	HLTF	ENSG00000071794.16	ENST00000310053.10:ENST00000465259.5:ENST00000392912.6:ENST00000494055.5:ENST00000467858.1:ENST00000472830.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	78	2	3.05795	4.1050450000000005	5.15214	0.0529681	0.0109324	0.149208	0.0706366
chr6	166955906	166955996	3302054	0	-	0.733333	(0.58,1]	chr6	319756	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000358165.7:ENST00000683158.1:ENST00000683333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	847	2	3.60807	4.105	4.60193	0.00495688	1.53925e-4	0.0425347	0.00691092
chr17	44206303	44206400	6911334	0	-	0.587629	(0.58,1]	chr17	703607	14	UTR3	UTR3:EXON_MRNA	UBTF	ENSG00000108312.15	ENST00000302904.8:ENST00000343638.9:ENST00000436088.6	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.1491	4.1049	5.0607	0.029633	0.0154006	0.116079	0.0869771
chr22	31625380	31625480	7788319	0	-	0.66	(0.58,1]	chr22	817185	4	SS5_PROX	SS5_PROX:INTRON	PISD	ENSG00000241878.12	ENST00000460723.5:ENST00000439502.7:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5:ENST00000474017.5:ENST00000478893.5:ENST00000491342.1:ENST00000422020.5:ENST00000442379.1:ENST00000429683.1:ENST00000431201.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	3.1491	4.1049	5.0607	0.029633	0.0154006	0.116079	0.0869771
chr4	707665	707765	1993704	0	+	0.64	(0.58,1]	chr4	203088	13	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	3.1491	4.1049	5.0607	0.029633	0.0154006	0.116079	0.0869771
chr15	25015416	25015514	6064007	0	+	0.336735	(0.33,0.36]	chr15	595414	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	5	122	2	2.22584	4.10482	5.9838	0.0244449	0.0123642	0.113463	0.0758857
chr17	76438937	76439037	6976383	0	-	0.46	(0.45,0.485]	chr17	712141	330	INTRON	INTRON	UBE2O	ENSG00000175931.13	ENST00000319380.12:ENST00000586409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	70	2	2.73276	4.10462	5.47648	0.0754102	0.0039628	0.173278	0.0368027
chr13	93910438	93910538	5624618	0	+	0.46	(0.45,0.485]	chr13	553064	795	INTRON	INTRON	GPC6	ENSG00000183098.11	ENST00000377047.9	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	3.14761	4.104495	5.06138	0.0492008	0.00728373	0.146142	0.0548996
chr21	43728136	43728235	7623875	0	+	0.575758	(0.523,0.58]	chr21	796696	44	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000438837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	94	2	2.33029	4.104095	5.8779	0.0735053	0.00121652	0.17026	0.0162693
chr20	32475538	32475637	7543623	0	-	0.717172	(0.58,1]	chr20	787372	4	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	58	2	2.47204	4.10403	5.73602	0.0623526	0.00904546	0.181127	0.0637469
chr21	43726162	43726261	7623855	0	+	0.40404	(0.39,0.419]	chr21	796696	24	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000438837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	73	2	2.80031	4.104015	5.40772	0.0728013	0.00585126	0.169397	0.0474117
chr2	36549869	36549966	759599	0	+	0.319588	(0.29,0.33]	chr2	88071	13	UTR3	UTR3:EXON_MRNA	CRIM1	ENSG00000150938.10	ENST00000280527.7	protein_coding	protein_coding	protein_coding	protein_coding	5	118	2	2.26187	4.103899999999999	5.94593	0.0209838	0.0101801	0.103241	0.068447
chr11	1006236	1006333	4787199	0	+	0.649485	(0.58,1]	chr11	458596	16	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	AP2A2	ENSG00000183020.15	ENST00000332231.9:ENST00000448903.7:ENST00000529858.6:ENST00000693238.1:ENST00000687890.1:ENST00000687792.1:ENST00000528815.5:ENST00000525891.5:ENST00000688963.1:ENST00000529438.5:ENST00000526401.6:ENST00000685443.1:ENST00000687570.1:ENST00000526376.1:ENST00000689772.1:ENST00000689771.1:ENST00000686734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	3.09402	4.103785	5.11355	0.0271806	0.0174733	0.112113	0.0928044
chr7	77316998	77317096	3610634	0	-	0.438776	(0.419,0.45]	chr7	348779	8	INTRON	INTRON	GSAP	ENSG00000186088.16	ENST00000257626.12:ENST00000449779.5:ENST00000491796.5:ENST00000441833.6:ENST00000440473.5:ENST00000415112.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	62	2	3.39073	4.10372	4.81671	0.08258	0.0128682	0.179396	0.0778066
chrX	71216877	71216972	7903341	0	+	0.547368	(0.523,0.58]	chrX	827967	19	UTR5	UTR5:EXON_MRNA:INTRON	GJB1	ENSG00000169562.13	ENST00000674844.1:ENST00000674549.1:ENST00000374029.2:ENST00000675209.1:ENST00000675368.1:ENST00000647424.1:ENST00000675609.1:ENST00000646835.1:ENST00000447581.2	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.08569	4.103095	5.1205	0.0416463	0.020773	0.136301	0.102713
chr19	34383197	34383297	7243182	0	+	0.63	(0.58,1]	chr19	741718	12	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	71	2	3.46232	4.10289	4.74346	0.0178328	0.0121457	0.0915706	0.0754623
chr4	73247586	73247686	2249886	0	-	0.28	[0,0.29]	chr4	226951	246	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	2	78	2	3.20651	4.102875	4.99924	0.0347661	0.00542442	0.126529	0.0453487
chr3	172115187	172115287	1628221	0	+	0.53	(0.523,0.58]	chr3	170543	22	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	244	2	3.5192	4.102415	4.68563	0.00253221	0.00138005	0.0317499	0.0178384
chr2	239276780	239276880	1391476	0	-	0.56	(0.523,0.58]	chr2	148740	252	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	56	2	3.13506	4.102315	5.06957	0.0448011	0.0186841	0.140478	0.0976296
chr7	2049810	2049910	3530730	0	-	0.63	(0.58,1]	chr7	340995	348	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	3.44157	4.102205	4.76284	0.0471737	0.00760198	0.143232	0.0561937
chr6	143185769	143185869	3014683	0	+	0.34	(0.33,0.36]	chr6	294873	202	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000458219.1:ENST00000470265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	62	2	3.56232	4.101815	4.64131	0.0867669	0.00801919	0.182221	0.0581592
chr17	40350225	40350325	6734462	0	+	0.57	(0.523,0.58]	chr17	677353	3	SS5_PROX	SS5_PROX:INTRON	RARA	ENSG00000131759.18	ENST00000254066.10:ENST00000394089.6:ENST00000425707.7:ENST00000394086.7:ENST00000394081.7:ENST00000475125.1	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	2.84901	4.101765	5.35452	0.0617545	0.00453096	0.158869	0.0400651
chr20	6012290	6012388	7425739	0	+	0.561224	(0.523,0.58]	chr20	773604	20	INTRON	INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000609154.1:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	69	2	2.84901	4.101765	5.35452	0.0617545	0.00453096	0.158869	0.0400651
chr17	37629172	37629261	6894517	0	-	0.52809	(0.523,0.58]	chr17	700177	1	INTRON	INTRON	DDX52	ENSG00000278053.5	ENST00000617633.5:ENST00000620209.4:ENST00000614307.4:ENST00000612255.4:ENST00000613633.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	2.80981	4.10154	5.39327	0.0364868	0.0277354	0.139793	0.112851
chr2	11813991	11814090	722748	0	+	0.555556	(0.523,0.58]	chr2	84465	85	INTRON	INTRON	LPIN1	ENSG00000134324.12	ENST00000449576.6:ENST00000425416.6:ENST00000396097.5:ENST00000396099.5:ENST00000256720.6:ENST00000674199.1:ENST00000404113.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	57	2	2.80981	4.10154	5.39327	0.0364868	0.0277354	0.139793	0.112851
chr7	47525436	47525536	3589067	0	-	0.44	(0.419,0.45]	chr7	346138	181	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.11129	4.10131	5.09133	0.0586308	0.023073	0.155565	0.109758
chr2	240523588	240523685	1394672	0	-	0.639175	(0.58,1]	chr2	149021	18	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000405523.7:ENST00000405002.5:ENST00000484526.5:ENST00000480230.5:ENST00000459901.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	52	2	3.25332	4.10107	4.94882	0.0354433	0.0120565	0.127188	0.0754623
chr10	34675634	34675715	4670410	0	-	0.358025	(0.33,0.36]	chr10	445530	1	EXON_PSEUDO	EXON_PSEUDO:INTRON	PARD3:RPS12P16	ENSG00000148498.17:ENSG00000215184.2	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6:ENST00000399739.2	protein_coding	protein_coding	protein_coding:processed_pseudogene	protein_coding:processed_pseudogene	1	61	2	3.49318	4.10106	4.70894	0.0798152	0.00940277	0.176933	0.0648045
chr2	152594443	152594543	928063	0	+	0.46	(0.45,0.485]	chr2	103106	130	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14:ENST00000492942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	59	2	3.42543	4.10057	4.77571	0.0719884	0.0103881	0.168159	0.0682598
chr13	46567302	46567402	5584047	0	+	0.31	(0.29,0.33]	chr13	550714	132	INTRON	INTRON	LRCH1	ENSG00000136141.15	ENST00000311191.10:ENST00000389797.8:ENST00000443945.6:ENST00000389798.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	57	2	3.28897	4.100569999999999	4.91217	0.0522244	0.0137233	0.148503	0.0814223
chr20	34568438	34568538	7547112	0	-	0.58	(0.523,0.58]	chr20	787854	71	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.54344	4.100465	5.65749	0.0599121	0.0182707	0.177269	0.0921579
chr4	186283591	186283691	2173833	0	+	0.55	(0.523,0.58]	chr4	220289	1	SS3_PROX	SS3_PROX:INTRON	F11	ENSG00000088926.14	ENST00000403665.7:ENST00000264692.8	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.54344	4.100465	5.65749	0.0599121	0.0182707	0.177269	0.0921579
chr17	82007139	82007239	6815368	0	+	0.71	(0.58,1]	chr17	688641	29	EXON_MRNA	EXON_MRNA:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5:ENST00000578236.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	560	2	3.06022	4.100225	5.14023	0.00654868	2.26272e-6	0.05361	1.81391e-4
chr1	151213647	151213747	244464	0	+	0.36	(0.33,0.36]	chr1	27795	1	SS5_PROX	SS5_PROX:INTRON	PIP5K1A	ENSG00000143398.20	ENST00000447555.5:ENST00000349792.9:ENST00000368888.9:ENST00000409426.5:ENST00000368890.8:ENST00000441902.6:ENST00000424999.1:ENST00000454769.2:ENST00000418435.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	62	2	2.51922	4.100155	5.68109	0.0659899	0.0201622	0.189025	0.0973366
chr1	1271573	1271637	380707	0	-	0.5625	(0.523,0.58]	chr1	42925	2	UTR5	UTR5:EXON_MRNA:INTRON	UBE2J2	ENSG00000160087.21	ENST00000450390.6:ENST00000349431.11:ENST00000347370.6:ENST00000400929.6:ENST00000464036.5:ENST00000360466.6:ENST00000400930.8:ENST00000473215.5:ENST00000435198.5:ENST00000509720.5:ENST00000491779.5:ENST00000466752.5:ENST00000503294.5:ENST00000477894.5:ENST00000422076.5:ENST00000502382.1:ENST00000461142.3:ENST00000488418.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	56	2	3.18279	4.09978	5.01677	0.0482765	0.0168396	0.144601	0.0919482
chr10	814356	814441	4619890	0	-	0.529412	(0.523,0.58]	chr10	441363	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	LARP4B	ENSG00000107929.16	ENST00000614908.5:ENST00000688365.1:ENST00000316157.8:ENST00000690516.1:ENST00000689323.1:ENST00000688042.1:ENST00000609318.5:ENST00000690211.1:ENST00000448368.5:ENST00000469487.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	56	2	3.18279	4.09978	5.01677	0.0482765	0.0168396	0.144601	0.0919482
chr3	66019698	66019798	1815679	0	-	0.39	(0.36,0.39]	chr3	187318	106	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	81	2	2.33887	4.099625	5.86038	0.0459241	0.0174081	0.154743	0.0901374
chr17	43546514	43546614	6739030	0	+	0.55	(0.523,0.58]	chr17	678633	13	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	77	2	2.98195	4.09961	5.21727	0.0361597	0.010154	0.127853	0.0677546
chrX	109686538	109686637	8090996	0	-	0.343434	(0.33,0.36]	chrX	843698	7	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000505855.1:ENST00000508092.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	217	2	3.67136	4.099325	4.52729	0.00392757	0.00206065	0.0405202	0.023562
chr2	179182183	179182282	1327580	0	-	0.383838	(0.36,0.39]	chr2	141697	53	INTRON	INTRON	SESTD1	ENSG00000187231.14	ENST00000428443.8:ENST00000440010.5:ENST00000435047.5:ENST00000486468.1:ENST00000452991.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	59	2	2.95428	4.098725	5.24317	0.0433841	0.0305895	0.138813	0.126768
chr20	381415	381500	7414313	0	+	0.705882	(0.58,1]	chr20	772271	3	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	TRIB3	ENSG00000101255.12	ENST00000615226.4:ENST00000217233.9:ENST00000449710.5:ENST00000422053.3	protein_coding	protein_coding	protein_coding	protein_coding	4	99	2	2.67932	4.098725	5.51813	0.013519	0.00733034	0.0792526	0.0550721
chr12	26712354	26712452	5400382	0	-	0.357143	(0.33,0.36]	chr12	528698	7	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000540791.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	2.77362	4.098645	5.42367	0.041944	0.0299185	0.149108	0.116945
chr11	96166606	96166706	5111802	0	-	0.53	(0.523,0.58]	chr11	496566	727	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	3.76107	4.098520000000001	4.43597	0.0313935	0.0141879	0.127822	0.0816012
chr2	239283975	239284075	1391548	0	-	0.67	(0.58,1]	chr2	148740	324	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	70	2	2.93515	4.098265	5.26138	0.021217	0.00938921	0.0996078	0.064735
chr3	179159995	179160094	1634665	0	+	0.474747	(0.45,0.485]	chr3	170935	99	INTRON	INTRON	PIK3CA	ENSG00000121879.6	ENST00000477735.1:ENST00000263967.4:ENST00000643187.1:ENST00000675786.1:ENST00000468036.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	71	2	2.90749	4.097975	5.28846	0.0588897	0.00612862	0.15607	0.0489549
chr15	98715581	98715680	6194000	0	+	0.494949	(0.485,0.523]	chr15	609659	71	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	56	2	3.07448	4.0977	5.12092	0.0414411	0.0214987	0.136301	0.10537
chr6	166334087	166334186	3301414	0	-	0.393939	(0.39,0.419]	chr6	319660	23	INTRON	INTRON	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000478705.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	439	2	3.47807	4.09764	4.71721	0.00945987	6.15163e-5	0.0656057	0.00190898
chr17	17828378	17828477	6865807	0	-	0.565657	(0.523,0.58]	chr17	695923	44	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.68276	4.097615	5.51247	0.0464998	0.0230387	0.156036	0.102982
chr3	4007578	4007678	1673226	0	-	0.41	(0.39,0.419]	chr3	175305	1797	INTRON	INTRON	SUMF1	ENSG00000144455.14	ENST00000448413.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	59	2	3.09555	4.0973049999999995	5.09906	0.0535378	0.0231436	0.150319	0.109883
chr10	35341600	35341700	4475724	0	+	0.43	(0.419,0.45]	chr10	428107	40	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	2.8723	4.097125	5.32195	0.0431627	0.0367198	0.139793	0.138403
chr11	70797142	70797242	5062253	0	-	0.45	(0.419,0.45]	chr11	492701	793	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	2.8723	4.097125	5.32195	0.0431627	0.0367198	0.139793	0.138403
chr3	28277840	28277939	1432610	0	+	0.424242	(0.419,0.45]	chr3	152954	141	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2:ENST00000396610.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	60	2	2.8723	4.097125	5.32195	0.0431627	0.0367198	0.139793	0.138403
chr3	171787067	171787167	1958327	0	-	0.49	(0.485,0.523]	chr3	199081	158	INTRON	INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9:ENST00000498278.5:ENST00000440204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	91	2	2.28384	4.09712	5.9104	0.031367	0.0119344	0.127822	0.0741726
chr20	48933202	48933302	7490267	0	+	0.55	(0.523,0.58]	chr20	780774	108	INTRON	INTRON	ARFGEF2	ENSG00000124198.10	ENST00000371917.5:ENST00000681399.1:ENST00000679436.1:ENST00000681885.1:ENST00000681021.1:ENST00000680871.1:ENST00000681656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	93	2	2.18685	4.09693	6.00701	0.0903217	8.61362e-4	0.186369	0.0127848
chr15	20442738	20442838	6202474	0	-	0.51	(0.485,0.523]	chr15	610287	17	INTRON	INTRON	HERC2P3	ENSG00000180229.12	ENST00000426501.5:ENST00000428453.5:ENST00000437318.5:ENST00000430598.5:ENST00000429257.5:ENST00000424611.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	1	56	2	3.12385	4.09692	5.06999	0.0445854	0.0193526	0.140478	0.0994526
chr3	52235506	52235606	1777932	0	-	0.49	(0.485,0.523]	chr3	184832	4	SS3_PROX	SS3_PROX:INTRON	TWF2	ENSG00000247596.10	ENST00000305533.10:ENST00000678838.1:ENST00000679296.1:ENST00000676989.1:ENST00000678549.1:ENST00000678882.1:ENST00000678700.1:ENST00000676800.1:ENST00000677127.1:ENST00000678681.1:ENST00000499914.2:ENST00000472755.2:ENST00000678330.1:ENST00000676988.1:ENST00000677058.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	56	2	3.12385	4.09692	5.06999	0.0445854	0.0193526	0.140478	0.0994526
chrX	9688775	9688870	7844702	0	+	0.494737	(0.485,0.523]	chrX	822468	1	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000645686.1:ENST00000646640.1:ENST00000683056.1:ENST00000647060.1:ENST00000684110.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	56	2	3.12385	4.09692	5.06999	0.0445854	0.0193526	0.140478	0.0994526
chr16	21493699	21493798	6564573	0	-	0.464646	(0.45,0.485]	chr16	654775	57	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522480.5:ENST00000522841.6:ENST00000437413.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	57	2	3.03233	4.096909999999999	5.16149	0.0427653	0.0244076	0.13762	0.113311
chr16	67914882	67914982	6473547	0	+	0.52	(0.485,0.523]	chr16	642897	48	INTRON	INTRON	PSKH1	ENSG00000159792.10	ENST00000291041.6	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.02337	4.096745	5.17012	0.038581	0.023933	0.131324	0.111785
chr21	42845166	42845265	7675423	0	-	0.373737	(0.36,0.39]	chr21	802287	15	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.30849	4.096745	4.885	0.0697729	0.0148029	0.167185	0.0847481
chr1	19469606	19469705	412062	0	-	0.525253	(0.523,0.58]	chr1	48151	199	INTRON	INTRON	CAPZB	ENSG00000077549.19	ENST00000264202.8:ENST00000264203.7:ENST00000375142.5:ENST00000482808.2:ENST00000674449.1:ENST00000674390.1:ENST00000375144.6:ENST00000674432.1:ENST00000433834.5:ENST00000459967.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	68	2	2.70025	4.096735	5.49322	0.0763549	0.00324246	0.174544	0.0319521
chr12	132952355	132952455	5542055	0	-	0.55	(0.523,0.58]	chr12	547064	37	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	75	2	2.68048	4.096475	5.51247	0.0230387	0.020416	0.102982	0.102668
chr19	5287733	5287833	7316485	0	-	0.56	(0.523,0.58]	chr19	755347	11	INTRON	INTRON	PTPRS	ENSG00000105426.18	ENST00000588552.5:ENST00000262963.11:ENST00000591760.5:ENST00000586065.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	75	2	2.64274	4.09643	5.55012	0.0221922	0.0217068	0.108193	0.100615
chr7	6704159	6704235	3542755	0	-	0.486842	(0.485,0.523]	chr7	342319	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3:ENST00000491565.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	68	2	2.5366	4.096305	5.65601	0.0953348	0.00224147	0.189038	0.024843
chr16	23067945	23068045	6567027	0	-	0.35	(0.33,0.36]	chr16	655168	67	UTR3	UTR3:EXON_MRNA	USP31	ENSG00000103404.15	ENST00000219689.12:ENST00000567975.1	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.13306	4.09613	5.0592	0.0504445	0.0206439	0.148216	0.102713
chr6	41723637	41723726	3132630	0	-	0.629214	(0.58,1]	chr6	305484	3	UTR5	UTR5:EXON_MRNA:INTRON	TFEB	ENSG00000112561.19	ENST00000358871.6:ENST00000373033.6:ENST00000230323.8:ENST00000677531.1:ENST00000403298.9:ENST00000420312.6:ENST00000424495.2:ENST00000678831.1:ENST00000419396.6:ENST00000416140.6:ENST00000678871.1:ENST00000394283.5:ENST00000679237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	54	2	3.56821	4.09612	4.62403	0.0578275	0.00550024	0.154343	0.0454065
chr7	79113715	79113815	3623133	0	-	0.42	(0.419,0.45]	chr7	349228	1049	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000628997.1:ENST00000636424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	61	2	3.31626	4.09612	4.87598	0.0768574	0.0150971	0.174882	0.0857427
chr7	112203701	112203801	3692545	0	-	0.33	(0.29,0.33]	chr7	354969	1992	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	76	2	2.79173	4.09612	5.40051	0.0252356	0.0163525	0.108065	0.0909775
chr16	85227965	85228065	6515348	0	+	0.69	(0.58,1]	chr16	646377	2	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	81	2	3.79598	4.09609	4.3962	0.0250928	0.00940557	0.114418	0.0653252
chr19	7907165	7907264	7199675	0	+	0.686869	(0.58,1]	chr19	734084	2	INTRON	INTRON	MAP2K7	ENSG00000076984.18	ENST00000397981.7:ENST00000397979.4:ENST00000468058.1:ENST00000397983.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	52	2	3.30273	4.09609	4.88945	0.0388928	0.0107069	0.131324	0.0700635
chr17	62537436	62537536	6780140	0	+	0.48	(0.45,0.485]	chr17	683601	7	INTRON	INTRON	TLK2	ENSG00000146872.19	ENST00000582809.5:ENST00000684213.1:ENST00000583843.5:ENST00000582195.6:ENST00000682085.1:ENST00000580705.5:ENST00000346027.10:ENST00000326270.13:ENST00000682203.1:ENST00000343388.11:ENST00000683536.1:ENST00000684440.1:ENST00000684772.1:ENST00000682274.1:ENST00000682827.1:ENST00000682075.1:ENST00000683104.1:ENST00000684012.1:ENST00000581041.5:ENST00000684553.1:ENST00000683737.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	78	2	2.37986	4.09598	5.8121	0.0401325	0.0158765	0.144727	0.0859576
chr19	34392195	34392290	7243272	0	+	0.484211	(0.45,0.485]	chr19	741719	1	EXON_MRNA	EXON_MRNA:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000589985.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	301	2	3.07401	4.095845	5.11768	0.00358047	0.001223	0.0342681	0.021209
chr10	72381979	72382078	4709318	0	-	0.353535	(0.33,0.36]	chr10	448923	20	INTRON	INTRON	MICU1	ENSG00000107745.20	ENST00000361114.10:ENST00000476605.7:ENST00000642044.1:ENST00000635239.1:ENST00000418483.6:ENST00000398763.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	60	2	2.65202	4.09584	5.53966	0.0523564	0.0251076	0.167062	0.107672
chr16	20685975	20686075	6416318	0	+	0.38	(0.36,0.39]	chr16	634386	39	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	80	2	2.77778	4.09584	5.4139	0.0340874	0.018802	0.125059	0.0980631
chr5	140405167	140405267	2551343	0	+	0.36	(0.33,0.36]	chr5	253267	25	INTRON	INTRON	ANKHD1	ENSG00000131503.21	ENST00000297183.10:ENST00000616482.4:ENST00000360839.7:ENST00000421134.5:ENST00000394723.7:ENST00000511151.5:ENST00000394722.7	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.93873	4.095825	5.25292	0.0384256	0.0305837	0.131324	0.126768
chr6	37955095	37955195	2910197	0	+	0.45	(0.419,0.45]	chr6	285651	247	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5:ENST00000373389.5	protein_coding	protein_coding	protein_coding	protein_coding	2	84	2	3.00342	4.09573	5.18804	0.051668	0.0118386	0.148503	0.0746945
chr8	120621757	120621857	4058117	0	-	0.45	(0.419,0.45]	chr8	386589	462	INTRON	INTRON	SNTB1	ENSG00000172164.15	ENST00000395601.7:ENST00000517992.2:ENST00000648490.1:ENST00000519177.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	110	2	3.05078	4.09564	5.1405	0.0550015	0.00643443	0.153337	0.0503748
chr20	56374056	56374155	7582164	0	-	0.363636	(0.36,0.39]	chr20	792151	1	INTRON	INTRON	AURKA	ENSG00000087586.18	ENST00000395914.5:ENST00000395913.7:ENST00000312783.10:ENST00000395911.5:ENST00000395915.8:ENST00000347343.6:ENST00000371356.6:ENST00000395907.5:ENST00000441357.5	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.9032	4.09549	5.28778	0.0407706	0.0337607	0.135868	0.133139
chr10	102645696	102645758	4576480	0	+	0.66129	(0.58,1]	chr10	437277	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	52	2	2.97713	4.09545	5.21377	0.0230012	0.0226795	0.108193	0.102982
chr16	81623198	81623297	6509529	0	+	0.464646	(0.45,0.485]	chr16	645926	11	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.12941	4.095395	5.06138	0.0492008	0.0199365	0.146142	0.100864
chr10	100549133	100549233	4569157	0	+	0.49	(0.485,0.523]	chr10	436105	11	UTR3	UTR3:EXON_MRNA	HIF1AN	ENSG00000166135.14	ENST00000299163.7	protein_coding	protein_coding	protein_coding	protein_coding	3	203	2	3.335	4.095235000000001	4.85547	0.0141019	2.10628e-4	0.0812274	0.00469277
chr7	127916189	127916289	3470885	0	+	0.4	(0.39,0.419]	chr7	335407	110	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	3.30655	4.095105	4.88366	0.0707789	0.0148983	0.168159	0.0847741
chr17	17742750	17742850	6689463	0	+	0.57	(0.523,0.58]	chr17	671344	182	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.92656	4.09494	5.26332	0.0337698	0.0289226	0.124319	0.124
chr10	79107926	79108025	4532434	0	+	0.484848	(0.45,0.485]	chr10	432420	383	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.17691	4.09479	5.01267	0.0393744	0.011221	0.132578	0.071709
chr6	131847775	131847848	3008420	0	+	0.369863	(0.36,0.39]	chr6	294182	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	ENPP1	ENSG00000197594.14	ENST00000486853.1:ENST00000647893.1:ENST00000513998.5:ENST00000650507.1:ENST00000684147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	332	2	3.36031	4.094505	4.8287	0.00256375	0.00152279	0.0320885	0.0190983
chr10	79101633	79101733	4532371	0	+	0.68	(0.58,1]	chr10	432420	320	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.71042	4.094405	5.47839	0.0396128	0.0145198	0.143388	0.0823104
chr10	79292356	79292456	4534291	0	+	0.59	(0.58,1]	chr10	432484	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10:ENST00000478357.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.71042	4.094405	5.47839	0.0396128	0.0145198	0.143388	0.0823104
chr11	70784851	70784951	5062130	0	-	0.64	(0.58,1]	chr11	492701	670	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.71042	4.094405	5.47839	0.0396128	0.0145198	0.143388	0.0823104
chr5	34192408	34192508	2634323	0	-	0.59	(0.58,1]	chr5	261375	30	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000507274.1:ENST00000508395.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	54	2	2.71042	4.094405	5.47839	0.0396128	0.0145198	0.143388	0.0823104
chr10	133347792	133347892	4783412	0	-	0.64	(0.58,1]	chr10	457516	16	INTRON	INTRON	ENSG00000226699	ENSG00000226699.1	ENST00000452591.1	lncRNA	lncRNA	lncRNA	lncRNA	1	65	2	3.16566	4.0944	5.02314	0.0304114	0.00638322	0.11845	0.0501889
chr14	19096105	19096204	5754301	0	+	0.59596	(0.58,1]	chr14	564239	23	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000619938.1:ENST00000644980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	11	476	2	3.29263	4.0944	4.89617	4.70029e-4	3.16477e-4	0.0101066	0.00834103
chr2	241669941	241670035	1078231	0	+	0.595745	(0.58,1]	chr2	117195	9	INTRON	INTRON	ATG4B	ENSG00000168397.17	ENST00000405546.7:ENST00000402096.5:ENST00000494465.5:ENST00000404914.8:ENST00000482507.5:ENST00000344376.9:ENST00000428861.1:ENST00000460211.5:ENST00000475693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	143	2	3.79235	4.0943950000000005	4.39644	0.00302484	0.00271982	0.0331692	0.0305643
chr10	114434477	114434576	4762108	0	-	0.414141	(0.39,0.419]	chr10	455500	35	UTR3	UTR3:EXON_MRNA	ABLIM1	ENSG00000099204.21	ENST00000533213.7:ENST00000392955.7:ENST00000392952.7	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.7362	4.09422	5.45224	0.0461646	0.032783	0.155334	0.122593
chr19	1414250	1414349	7187489	0	+	0.535354	(0.523,0.58]	chr19	731286	38	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	68	2	2.48975	4.0940449999999995	5.69834	0.101574	0.00194036	0.196431	0.0225083
chr6	24224487	24224587	3108987	0	-	0.46	(0.45,0.485]	chr6	301412	190	INTRON	INTRON	DCDC2	ENSG00000146038.12	ENST00000378454.8	protein_coding	protein_coding	protein_coding	protein_coding	1	84	2	3.51602	4.093705	4.67139	0.0229356	0.0223378	0.108193	0.102982
chr3	13203725	13203825	1691179	0	-	0.55	(0.523,0.58]	chr3	176566	392	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	2.7389	4.093675	5.44845	0.072318	0.00361636	0.168347	0.0342681
chr20	25493601	25493699	7539889	0	-	0.571429	(0.523,0.58]	chr20	787018	17	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5:ENST00000461642.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	75	2	2.75313	4.0936200000000005	5.43411	0.026041	0.0173428	0.109673	0.0927775
chr10	79224372	79224472	4533605	0	+	0.63	(0.58,1]	chr10	432457	77	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.55596	4.09357	5.63118	0.0534085	0.0109983	0.167062	0.0708586
chr12	132522037	132522137	5352834	0	+	0.74	(0.58,1]	chr12	523658	102	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.55596	4.09357	5.63118	0.0534085	0.0109983	0.167062	0.0708586
chr1	44812198	44812277	115024	0	+	0.493671	(0.485,0.523]	chr1	14295	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BTBD19	ENSG00000222009.9	ENST00000450269.6:ENST00000409335.6:ENST00000439563.2:ENST00000485668.5:ENST00000482715.5:ENST00000475105.5:ENST00000495433.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	68	2	2.49197	4.09337	5.69477	0.10114	0.00203227	0.196131	0.0232814
chr7	5419561	5419661	3536266	0	-	0.71	(0.58,1]	chr7	341498	123	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	3	177	2	3.47755	4.09312	4.70869	0.0074544	1.95782e-4	0.0576451	0.00445752
chr22	15818780	15818876	7682912	0	+	0.53125	(0.523,0.58]	chr22	803567	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000383038.7:ENST00000447898.5:ENST00000607933.1	lncRNA	lncRNA	lncRNA	lncRNA	6	399	2	3.94212	4.09267	4.24322	0.00303511	1.59858e-4	0.0350226	0.00385962
chr20	44405261	44405359	7482968	0	+	0.295918	(0.29,0.33]	chr20	779645	20	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	501	2	3.8881	4.092625	4.29715	0.00307457	6.9593e-5	0.03541	0.00209686
chr8	127812137	127812237	3917960	0	+	0.64	(0.58,1]	chr8	374160	82	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000656168.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2	lncRNA	lncRNA	lncRNA	lncRNA	1	62	2	2.87471	4.092535	5.31036	0.0495478	0.00312721	0.146562	0.0311915
chr9	133803787	133803886	4428429	0	-	0.535354	(0.523,0.58]	chr9	423268	56	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	2.98385	4.092445	5.20104	0.0505794	0.00648051	0.148456	0.0503748
chrX	154356357	154356455	8125368	0	-	0.642857	(0.58,1]	chrX	846837	9	INTRON	INTRON	FLNA	ENSG00000196924.19	ENST00000420627.5:ENST00000422373.6:ENST00000360319.9:ENST00000678304.1:ENST00000369856.8:ENST00000369850.10:ENST00000676696.1:ENST00000610817.5:ENST00000673639.2:ENST00000490936.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	59	2	2.38295	4.092425	5.8019	0.0730701	0.007984	0.199669	0.0596361
chr22	24099847	24099944	7695359	0	+	0.587629	(0.58,1]	chr22	805517	12	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	71	2	3.07041	4.0919799999999995	5.11355	0.0271806	0.00661304	0.112113	0.0512951
chr6	155255443	155255542	3297575	0	-	0.323232	(0.29,0.33]	chr6	319132	13	EXON_LNCRNA	EXON_LNCRNA	ENSG00000235381	ENSG00000235381.1	ENST00000435295.1	lncRNA	lncRNA	lncRNA	lncRNA	1	59	2	3.52516	4.09192	4.65868	0.0735584	0.0079683	0.17026	0.0579377
chr17	314939	315038	6821425	0	-	0.555556	(0.523,0.58]	chr17	689582	84	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	95	2	2.48549	4.091915	5.69834	0.0582885	0.00194036	0.155373	0.0225083
chr10	18571058	18571157	4642439	0	-	0.373737	(0.36,0.39]	chr10	443321	187	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	2	167	2	4.05723	4.091815	4.1264	0.00907014	0.00256597	0.063783	0.0274214
chr1	43565103	43565202	107090	0	+	0.494949	(0.485,0.523]	chr1	13192	108	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	70	2	2.98607	4.09178	5.19749	0.0503063	0.00672953	0.148176	0.0519464
chr19	7270395	7270495	7324980	0	-	0.52	(0.485,0.523]	chr19	756833	21	INTRON	INTRON	INSR	ENSG00000171105.14	ENST00000341500.9:ENST00000302850.10:ENST00000598216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	70	2	2.98607	4.09178	5.19749	0.0503063	0.00672953	0.148176	0.0519464
chr19	16130104	16130198	7216439	0	+	0.457447	(0.45,0.485]	chr19	737377	1	INTRON	INTRON	RAB8A	ENSG00000167461.12	ENST00000300935.8:ENST00000586682.1:ENST00000592971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	57	2	2.92826	4.09168	5.2551	0.0373953	0.0301249	0.130656	0.126768
chr12	26529751	26529851	5398521	0	-	0.33	(0.29,0.33]	chr12	528527	341	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.0064	4.09165	5.1769	0.035586	0.0251671	0.127529	0.114704
chr10	31928382	31928482	4661831	0	-	0.68	(0.58,1]	chr10	444986	3	SS5_PROX	SS5_PROX:INTRON	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9	protein_coding	protein_coding	protein_coding	protein_coding	3	175	2	3.89863	4.09157	4.28451	0.00766639	1.76873e-4	0.0583292	0.00414413
chr16	81681816	81681915	6510129	0	+	0.444444	(0.419,0.45]	chr16	645979	28	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	2.52086	4.09149	5.66212	0.0683849	0.0266819	0.193274	0.111563
chr7	23415081	23415178	3552652	0	-	0.56701	(0.523,0.58]	chr7	343216	20	EXON_MRNA	EXON_MRNA:INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	116	2	2.27301	4.09149	5.90997	0.0198465	0.012016	0.100864	0.0743424
chr2	75548287	75548387	1194662	0	-	0.48	(0.45,0.485]	chr2	129875	217	INTRON	INTRON	EVA1A	ENSG00000115363.14	ENST00000485891.1:ENST00000490746.5:ENST00000233712.5:ENST00000393913.8:ENST00000410113.5:ENST00000410071.5:ENST00000432649.5:ENST00000486696.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	58	2	2.75654	4.091205	5.42587	0.0419966	0.0290571	0.149115	0.116079
chr3	149835737	149835837	1595533	0	+	0.37	(0.36,0.39]	chr3	168720	128	INTRON	INTRON	RNF13	ENSG00000082996.20	ENST00000344229.7:ENST00000470151.5:ENST00000466478.5:ENST00000491086.5:ENST00000392894.8:ENST00000467977.5:ENST00000474348.5:ENST00000467996.1:ENST00000468648.5:ENST00000459632.5:ENST00000466795.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	59	2	3.18563	4.091175	4.99672	0.0604395	0.0191961	0.158506	0.0994526
chr17	57460817	57460917	6761820	0	+	0.57	(0.523,0.58]	chr17	682137	157	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	76	2	2.39285	4.091045	5.78924	0.0376513	0.0147166	0.140049	0.0826843
chr16	50597498	50597598	6451902	0	+	0.46	(0.45,0.485]	chr16	639902	389	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	77	2	2.46542	4.091005	5.71659	0.0337868	0.018513	0.133182	0.0928429
chr16	50526541	50526641	6451199	0	+	0.6	(0.58,1]	chr16	639836	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000260573	ENSG00000260573.4	ENST00000646992.1	lncRNA	lncRNA	lncRNA	lncRNA	6	340	2	3.84072	4.0909200000000006	4.34112	0.00216696	6.61829e-5	0.0292299	0.00201544
chr9	133737556	133737654	4427959	0	-	0.632653	(0.58,1]	chr9	423136	30	INTRON	INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000427237.6:ENST00000298628.6	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.29173	4.0908999999999995	4.89007	0.0243429	0.00872525	0.106588	0.0612699
chr11	70583529	70583629	5060108	0	-	0.57	(0.523,0.58]	chr11	492663	802	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	57	2	2.74768	4.090895	5.43411	0.0411359	0.026041	0.147756	0.109673
chr2	235046716	235046815	1062442	0	+	0.414141	(0.39,0.419]	chr2	115634	31	INTRON	INTRON	SH3BP4	ENSG00000130147.16	ENST00000392011.7:ENST00000409212.5:ENST00000344528.8	protein_coding	protein_coding	protein_coding	protein_coding	6	443	2	4.01902	4.09075	4.16248	0.00354269	3.12548e-4	0.0382122	0.00625974
chr5	151080155	151080239	2790681	0	-	0.5	(0.485,0.523]	chr5	273789	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TNIP1	ENSG00000145901.16	ENST00000521591.6:ENST00000520931.5:ENST00000389378.6:ENST00000610874.4:ENST00000315050.11:ENST00000523338.5:ENST00000610535.5:ENST00000522226.5:ENST00000518977.5:ENST00000522100.5:ENST00000520695.5:ENST00000521001.1:ENST00000522926.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	79	2	2.1863	4.09052	5.99474	0.0567965	0.0103305	0.172995	0.0684871
chr1	1564334	1564434	381940	0	-	0.56	(0.523,0.58]	chr1	43355	36	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SSU72	ENSG00000160075.12	ENST00000291386.4:ENST00000378725.3:ENST00000359060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	103	2	2.15937	4.09037	6.02137	0.031163	0.00992924	0.127822	0.0671959
chr19	34385596	34385696	7243206	0	+	0.46	(0.45,0.485]	chr19	741718	36	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	106	2	2.84262	4.090215000000001	5.33781	0.0347912	0.0054758	0.126561	0.0454065
chr10	50382702	50382802	4688271	0	-	0.42	(0.419,0.45]	chr10	447049	380	INTRON	INTRON	SGMS1	ENSG00000198964.14	ENST00000429490.5:ENST00000361781.7:ENST00000619438.4:ENST00000492601.2:ENST00000609445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	73	2	2.65059	4.09009	5.52959	0.0917577	0.00484244	0.188571	0.0418176
chr15	67077386	67077486	6139190	0	+	0.43	(0.419,0.45]	chr15	603934	91	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	2.65059	4.09009	5.52959	0.0917577	0.00484244	0.188571	0.0418176
chr14	68898191	68898290	5999321	0	-	0.393939	(0.39,0.419]	chr14	588704	41	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	73	2	2.86613	4.08999	5.31385	0.0665161	0.0071966	0.162469	0.0543014
chr6	34587386	34587485	3124179	0	-	0.545455	(0.523,0.58]	chr6	304700	2	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	3	216	2	3.81482	4.0899149999999995	4.36501	0.00582282	0.00085027500000000005	0.0504316	0.0126678
chr5	78972182	78972282	2706554	0	-	0.49	(0.485,0.523]	chr5	266741	26	INTRON	INTRON	ARSB	ENSG00000113273.17	ENST00000264914.10:ENST00000396151.7:ENST00000565165.2	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.91537	4.08956	5.26375	0.0335928	0.0298565	0.126732	0.124319
chr19	4394058	4394157	7313323	0	-	0.40404	(0.39,0.419]	chr19	754735	36	INTRON	INTRON	SH3GL1	ENSG00000141985.9	ENST00000269886.7:ENST00000598564.5:ENST00000417295.6:ENST00000598219.1	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.18369	4.089535	4.99538	0.0613573	0.0193131	0.158506	0.0994526
chr2	215422343	215422443	1368531	0	-	0.46	(0.45,0.485]	chr2	145761	1	SS3_PROX	SS3_PROX:INTRON	FN1	ENSG00000115414.21	ENST00000421182.5:ENST00000323926.10:ENST00000336916.8:ENST00000357867.8:ENST00000359671.5:ENST00000443816.5:ENST00000446046.5:ENST00000354785.11:ENST00000432072.6:ENST00000356005.8:ENST00000426059.1	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	2.08776	4.08953	6.0913	0.0696113	0.00998516	0.194713	0.0673647
chr2	240621018	240621117	1075153	0	+	0.575758	(0.523,0.58]	chr2	116654	16	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.27377	4.089385	4.905	0.0563605	0.0137592	0.154188	0.0814923
chr6	158233102	158233202	3060846	0	+	0.56	(0.523,0.58]	chr6	297572	4	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	56	2	3.27377	4.089385	4.905	0.0563605	0.0137592	0.154188	0.0814923
chr4	2812477	2812577	2000230	0	+	0.69	(0.58,1]	chr4	203925	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SH3BP2	ENSG00000087266.17	ENST00000503219.5:ENST00000512131.5:ENST00000503393.8:ENST00000510074.5:ENST00000511237.5:ENST00000504294.5:ENST00000508385.5:ENST00000513020.5:ENST00000511663.5:ENST00000512014.5:ENST00000513095.5:ENST00000502260.5:ENST00000435136.8:ENST00000511185.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	3.35051	4.08902	4.82753	0.0427798	0.00953058	0.13762	0.0650078
chr5	127048115	127048215	2754186	0	-	0.61	(0.58,1]	chr5	269863	2	SS3_PROX	SS3_PROX:INTRON	C5orf63	ENSG00000164241.14	ENST00000535381.6:ENST00000508527.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	3.35051	4.08902	4.82753	0.0427798	0.00953058	0.13762	0.0650078
chr9	124493946	124494045	4402664	0	-	0.636364	(0.58,1]	chr9	419817	4	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.35051	4.08902	4.82753	0.0427798	0.00953058	0.13762	0.0650078
chr2	236000809	236000909	1067624	0	+	0.59	(0.58,1]	chr2	115748	318	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5:ENST00000418654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	2.78186	4.08866	5.39546	0.0342923	0.0168207	0.13449	0.0884836
chr7	100581114	100581195	3654728	0	-	0.592593	(0.58,1]	chr7	352213	4	INTRON	INTRON	LRCH4	ENSG00000077454.17	ENST00000310300.11:ENST00000497245.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	2.78186	4.08866	5.39546	0.0342923	0.0168207	0.13449	0.0884836
chr1	31907003	31907100	437228	0	-	0.360825	(0.36,0.39]	chr1	52047	7	UTR3	UTR3:EXON_MRNA	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000602725.5	protein_coding	protein_coding	protein_coding	protein_coding	4	110	2	2.31684	4.08861	5.86038	0.0249685	0.0174081	0.114418	0.0901374
chr8	120752490	120752590	4059428	0	-	0.33	(0.29,0.33]	chr8	386607	582	INTRON	INTRON	SNTB1	ENSG00000172164.15	ENST00000395601.7:ENST00000517992.2:ENST00000648490.1:ENST00000519177.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	58	2	3.45065	4.0885	4.72635	0.0672935	0.0094921	0.163263	0.0650078
chr2	239085228	239085326	1389527	0	-	0.306122	(0.29,0.33]	chr2	148605	6	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000487617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	61	2	3.66355	4.08828	4.51301	0.0885563	0.00571018	0.183874	0.0467736
chrX	9526991	9527091	7843065	0	+	0.61	(0.58,1]	chrX	822404	248	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.91493	4.088155	5.26138	0.0259506	0.021217	0.116361	0.0996078
chr7	29960739	29960839	3564561	0	-	0.48	(0.45,0.485]	chr7	343990	50	INTRON	INTRON	SCRN1	ENSG00000136193.17	ENST00000426154.5:ENST00000242059.10:ENST00000425819.6:ENST00000409497.5:ENST00000434476.6:ENST00000421434.5:ENST00000494620.1:ENST00000438497.5:ENST00000409570.3:ENST00000631335.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	2.5616	4.087955	5.61431	0.0598406	0.0217589	0.177269	0.100615
chr17	7108361	7108461	6847715	0	-	0.64	(0.58,1]	chr17	693415	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	206	2	3.76405	4.08723	4.41041	0.00263932	4.46411e-4	0.0325876	0.00807899
chr14	103106106	103106195	5921880	0	+	0.629214	(0.58,1]	chr14	579221	7	INTRON	INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	130	2	3.93773	4.0867000000000004	4.23567	0.00708574	8.49275e-4	0.0558168	0.0126615
chr18	69612990	69613090	7085305	0	+	0.5	(0.485,0.523]	chr18	722127	131	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.38908	4.08667	4.78426	0.0660335	0.0107186	0.162385	0.0700744
chr10	75692767	75692867	4523091	0	+	0.54	(0.523,0.58]	chr10	432271	448	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	93	2	2.7796	4.086435	5.39327	0.0277354	0.00988091	0.112851	0.0664239
chr10	75498093	75498193	4521139	0	+	0.45	(0.419,0.45]	chr10	432249	465	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	2.89397	4.0863249999999995	5.27868	0.0457732	0.0151064	0.142336	0.085778
chr1	55057935	55058035	132584	0	+	0.61	(0.58,1]	chr1	16373	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	63	2	3.02751	4.08624	5.14497	0.0385189	0.00474658	0.131324	0.0413976
chr10	79104729	79104829	4532402	0	+	0.59	(0.58,1]	chr10	432420	351	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	3.02751	4.08624	5.14497	0.0385189	0.00474658	0.131324	0.0413976
chr4	914098	914168	2178762	0	-	0.714286	(0.58,1]	chr4	220689	2	SS3_PROX	SS3_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000505819.5:ENST00000507580.5:ENST00000502656.5:ENST00000512325.3:ENST00000510022.5:ENST00000511229.5:ENST00000511983.5:ENST00000628912.1:ENST00000513935.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	63	2	3.02751	4.08624	5.14497	0.0385189	0.00474658	0.131324	0.0413976
chr10	102649778	102649877	4576522	0	+	0.535354	(0.523,0.58]	chr10	437284	1	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1:ENST00000487927.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	69	2	2.918	4.086015	5.25403	0.0558053	0.00573579	0.154188	0.0467736
chr9	124490480	124490580	4402627	0	-	0.54	(0.523,0.58]	chr9	419805	71	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	2.918	4.086015	5.25403	0.0558053	0.00573579	0.154188	0.0467736
chr10	100940333	100940432	4569556	0	+	0.484848	(0.45,0.485]	chr10	436170	12	INTRON	INTRON	SLF2	ENSG00000119906.13	ENST00000238961.9:ENST00000649226.1:ENST00000370269.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	92	2	2.27019	4.08593	5.90167	0.0334092	0.0137135	0.133139	0.0799457
chr16	84736069	84736167	6514190	0	+	0.530612	(0.523,0.58]	chr16	646283	22	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	201	2	3.3051	4.08592	4.86674	0.0149302	1.96709e-4	0.0835686	0.00447406
chr16	89294289	89294388	6659748	0	-	0.515152	(0.485,0.523]	chr16	666648	21	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	243	2	4.07352	4.0853	4.09708	0.00772253	2.78566e-4	0.0586912	0.00577243
chr4	124708399	124708499	2320514	0	-	0.31	(0.29,0.33]	chr4	233240	291	INTRON	INTRON	ANKRD50	ENSG00000151458.12	ENST00000504087.6:ENST00000515641.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.20079	4.084965	4.96914	0.0481918	0.01667	0.144601	0.0917029
chr5	74823973	74824072	2692296	0	-	0.40404	(0.39,0.419]	chr5	265977	96	INTRON	INTRON	FAM169A	ENSG00000198780.13	ENST00000389156.9:ENST00000510496.5:ENST00000687041.1:ENST00000514215.5:ENST00000510609.5:ENST00000513277.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	60	2	3.34529	4.08484	4.82439	0.0762206	0.0137041	0.174484	0.0814223
chr12	132545311	132545411	5353069	0	+	0.45	(0.419,0.45]	chr12	523670	170	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.7644	4.084585000000001	5.40477	0.0447981	0.0385125	0.154539	0.131324
chr5	123513369	123513469	2523486	0	+	0.51	(0.485,0.523]	chr5	250487	4	INTRON	INTRON	CSNK1G3	ENSG00000151292.18	ENST00000345990.9:ENST00000508708.1:ENST00000512718.7:ENST00000511130.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	75	2	2.51105	4.08448	5.65791	0.029737800000000002	0.0181582	0.126591	0.0921579
chr13	40559034	40559134	5692253	0	-	0.32	(0.29,0.33]	chr13	558737	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FOXO1	ENSG00000150907.10	ENST00000379561.6	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.89841	4.084474999999999	5.27054	0.0313146	0.0308815	0.127822	0.119556
chr1	2231795	2231892	4528	0	+	0.649485	(0.58,1]	chr1	1044	17	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	2	70	2	3.00436	4.0844450000000005	5.16453	0.0249802	0.00785951	0.10758	0.0576181
chr16	22424712	22424812	6566811	0	-	0.56	(0.523,0.58]	chr16	655121	21	INTRON	INTRON	CDR2:RRN3P3	ENSG00000140743.8:ENSG00000257122.5	ENST00000564542.5:ENST00000563573.5:ENST00000569045.1:ENST00000551766.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	2	76	2	2.9514	4.084335	5.21727	0.0361597	0.0109262	0.127853	0.0706366
chr1	19316317	19316415	55638	0	+	0.44898	(0.419,0.45]	chr1	5682	31	INTRON	INTRON	SLC66A1	ENSG00000040487.13	ENST00000375153.8:ENST00000375155.7:ENST00000469076.5:ENST00000400548.6:ENST00000497827.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	61	2	2.64776	4.084245	5.52073	0.0551054	0.0327198	0.169163	0.122543
chr6	79641085	79641185	2943246	0	+	0.44	(0.419,0.45]	chr6	289685	92	INTRON	INTRON	SH3BGRL2	ENSG00000198478.8	ENST00000369838.6	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	2.64776	4.084245	5.52073	0.0551054	0.0327198	0.169163	0.122543
chr16	78989611	78989711	6504315	0	+	0.52	(0.485,0.523]	chr16	645717	2093	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	3.26255	4.083985	4.90542	0.0561086	0.0142848	0.154188	0.0833845
chr21	44867233	44867331	7678514	0	-	0.428571	(0.419,0.45]	chr21	802773	12	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	20	1351	2	3.55897	4.083985	4.609	0.00395004	9.50078e-5	0.0406092	0.00262696
chr9	124499490	124499589	4402720	0	-	0.50505	(0.485,0.523]	chr9	419817	60	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.26255	4.083985	4.90542	0.0561086	0.0142848	0.154188	0.0833845
chr9	14843259	14843359	4280150	0	-	0.59	(0.58,1]	chr9	408985	2	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	188	2	3.85672	4.083385	4.31005	0.00334874	6.7911e-4	0.0369107	0.0108488
chr6	154804123	154804216	3044825	0	+	0.494624	(0.485,0.523]	chr6	296668	1	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000367178.8	protein_coding	protein_coding	protein_coding	protein_coding	4	105	2	1.89906	4.083345	6.26763	0.0542037	0.00639185	0.167824	0.0529032
chr3	38378745	38378845	1445831	0	+	0.51	(0.485,0.523]	chr3	154250	1	SS3_PROX	SS3_PROX:INTRON	XYLB	ENSG00000093217.11	ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1:ENST00000472721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	56	2	2.85817	4.08327	5.30837	0.0334631	0.0314138	0.133139	0.12069
chr17	82630225	82630322	6989762	0	-	0.649485	(0.58,1]	chr17	715034	2	INTRON	INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000571835.5:ENST00000573616.5:ENST00000571817.5:ENST00000574828.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	103	2	3.20815	4.083145	4.95814	0.0128255	0.0074469	0.0770824	0.0553519
chr15	63588519	63588610	6129554	0	+	0.351648	(0.33,0.36]	chr15	603015	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	USP3	ENSG00000140455.17	ENST00000540797.5:ENST00000380324.8:ENST00000558157.5:ENST00000559192.5:ENST00000268049.11:ENST00000558285.5:ENST00000559257.5:ENST00000538686.6:ENST00000559711.5:ENST00000558218.5:ENST00000561381.5:ENST00000559718.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	60	2	3.45733	4.083135	4.70894	0.0798152	0.0102015	0.176933	0.0678072
chr17	55284257	55284357	6757304	0	+	0.5	(0.485,0.523]	chr17	681711	2	SS5_PROX	SS5_PROX:INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000572234.2:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	135	2	1.70831	4.08312	6.45793	0.0551961	0.00452302	0.169327	0.0436138
chr6	167940834	167940933	3074509	0	+	0.545455	(0.523,0.58]	chr6	298923	77	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7:ENST00000507679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	58	2	2.61478	4.08245	5.55012	0.052707	0.0217068	0.167062	0.100615
chr2	239337292	239337392	1392083	0	-	0.55	(0.523,0.58]	chr2	148752	128	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	91	2	2.1168	4.08236	6.04792	0.044099	0.00948306	0.153511	0.0656057
chr11	47518768	47518867	5036061	0	-	0.464646	(0.45,0.485]	chr11	487589	40	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	2.62266	4.08226	5.54186	0.0243502	0.0243222	0.113231	0.106588
chr1	31414064	31414153	80064	0	+	0.696629	(0.58,1]	chr1	9151	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SERINC2	ENSG00000168528.12	ENST00000373710.5:ENST00000536859.5:ENST00000487207.5:ENST00000373709.8:ENST00000536384.2:ENST00000491976.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	362	2	2.91493	4.082135	5.24934	0.0259506	1.36475e-4	0.116361	0.00649687
chr16	89222962	89223056	6523493	0	+	0.648936	(0.58,1]	chr16	647081	4	SS3_PROX	SS3_PROX:INTRON	ZNF778	ENSG00000170100.14	ENST00000433976.7:ENST00000620195.4:ENST00000564906.5:ENST00000567651.5:ENST00000306502.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	61	2	2.6577	4.081335	5.50497	0.0695799	0.00187297	0.167028	0.0219434
chr19	39158642	39158741	7259595	0	+	0.626263	(0.58,1]	chr19	744161	14	INTRON	INTRON	PAK4	ENSG00000130669.17	ENST00000602004.1:ENST00000599470.5:ENST00000360442.8:ENST00000321944.8:ENST00000593480.5:ENST00000358301.7:ENST00000593690.5:ENST00000599386.5:ENST00000599657.5	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	2.7038	4.08126	5.45872	0.0648563	0.00211999	0.162218	0.0239744
chr7	47355219	47355318	3587343	0	-	0.656566	(0.58,1]	chr7	346030	85	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	2.7038	4.08126	5.45872	0.0648563	0.00211999	0.162218	0.0239744
chr14	30563740	30563840	5769312	0	+	0.54	(0.523,0.58]	chr14	565792	25	INTRON	INTRON	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000438909.6:ENST00000544007.5:ENST00000550944.5:ENST00000552488.1:ENST00000648008.1:ENST00000553504.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	75	2	2.43762	4.081245	5.72487	0.0343548	0.0163679	0.134666	0.0875379
chr5	95888075	95888174	2731121	0	-	0.50505	(0.485,0.523]	chr5	268199	31	UTR3	UTR3:EXON_MRNA	ELL2	ENSG00000118985.16	ENST00000237853.9	protein_coding	protein_coding	protein_coding	protein_coding	6	396	2	3.91363	4.080855	4.24808	0.00319321	1.63402e-4	0.0361255	0.00391702
chr8	140999881	140999980	4093130	0	-	0.373737	(0.36,0.39]	chr8	388934	154	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	97	2	2.00816	4.08079	6.15342	0.0594067	0.0108737	0.176539	0.0707085
chr2	222871550	222871650	1037807	0	+	0.48	(0.45,0.485]	chr2	113181	56	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	92	2	2.20266	4.080550000000001	5.95844	0.0384371	0.0124835	0.141711	0.0761905
chr2	235505340	235505439	1062649	0	+	0.535354	(0.523,0.58]	chr2	115651	101	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	2.80981	4.080525	5.35124	0.0364868	0.0295772	0.139793	0.116079
chr2	236000010	236000109	1067616	0	+	0.525253	(0.523,0.58]	chr2	115748	310	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5:ENST00000418654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	2.80981	4.080525	5.35124	0.0364868	0.0295772	0.139793	0.116079
chrX	66610282	66610381	8055397	0	-	0.434343	(0.419,0.45]	chrX	840845	47	INTRON	INTRON	EDA2R	ENSG00000131080.15	ENST00000374719.8:ENST00000451436.6:ENST00000396050.5:ENST00000253392.5	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.02039	4.080445	5.1405	0.0550015	0.0276403	0.153337	0.120359
chr13	20856760	20856860	5664430	0	-	0.45	(0.419,0.45]	chr13	556376	6	INTRON	INTRON	XPO4	ENSG00000132953.18	ENST00000255305.11:ENST00000490513.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	2.9727	4.08037	5.18804	0.051668	0.0303302	0.148503	0.126768
chr2	239349379	239349479	1392204	0	-	0.42	(0.419,0.45]	chr2	148752	249	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	59	2	2.9727	4.08037	5.18804	0.051668	0.0303302	0.148503	0.126768
chrX	44950583	44950683	7872447	0	+	0.38	(0.36,0.39]	chrX	825082	762	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	79	2	2.7459	4.0799	5.4139	0.0340874	0.0201393	0.125059	0.101501
chr3	13205325	13205425	1691195	0	-	0.55	(0.523,0.58]	chr3	176566	408	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	2.24954	4.0797550000000005	5.90997	0.0500176	0.012016	0.161481	0.0743424
chr16	8842106	8842206	6382815	0	+	0.48	(0.45,0.485]	chr16	631333	130	INTRON	INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000683435.1:ENST00000683094.1:ENST00000566604.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000567697.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	2.81608	4.0795449999999995	5.34301	0.0375071	0.0328801	0.139823	0.122593
chr10	79112820	79112920	4532483	0	+	0.45	(0.419,0.45]	chr10	432420	432	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	2.85295	4.079215	5.30548	0.0703179	0.00792071	0.168159	0.057762
chr12	111483713	111483808	5499218	0	-	0.336842	(0.33,0.36]	chr12	541308	5	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000389154.7:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000492467.6:ENST00000673557.1:ENST00000673283.1:ENST00000673273.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000643474.1:ENST00000643694.1:ENST00000645162.1:ENST00000551755.6:ENST00000644883.1:ENST00000647305.1:ENST00000495342.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	58	2	3.26334	4.07901	4.89468	0.0629186	0.0156643	0.160778	0.0878971
chr2	54664064	54664161	800399	0	+	0.350515	(0.33,0.36]	chr2	90972	13	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000467371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	58	2	3.26334	4.07901	4.89468	0.0629186	0.0156643	0.160778	0.0878971
chr6	129668081	129668181	3259496	0	-	0.35	(0.33,0.36]	chr6	315424	257	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.26334	4.07901	4.89468	0.0629186	0.0156643	0.160778	0.0878971
chr3	9437388	9437486	1402507	0	+	0.326531	(0.29,0.33]	chr3	150160	1	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000443339.5:ENST00000406341.5:ENST00000670063.1:ENST00000684055.1:ENST00000407969.5:ENST00000490791.5:ENST00000493918.5:ENST00000691659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	56	2	3.24556	4.0788649999999995	4.91217	0.0522244	0.0151115	0.148503	0.085778
chr10	50743010	50743110	4488125	0	+	0.45	(0.419,0.45]	chr10	429376	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ASAH2B	ENSG00000204147.11	ENST00000374007.5:ENST00000645350.1:ENST00000647317.2:ENST00000643505.1:ENST00000643851.1:ENST00000374006.1:ENST00000483649.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	59	2	2.92337	4.07872	5.23407	0.0486006	0.0333415	0.145074	0.133139
chr13	32172467	32172567	5562373	0	+	0.42	(0.419,0.45]	chr13	548646	8	INTRON	INTRON	FRY	ENSG00000073910.23	ENST00000645780.1:ENST00000647500.1:ENST00000642040.1:ENST00000542859.6	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.92337	4.07872	5.23407	0.0486006	0.0333415	0.145074	0.133139
chr1	228151794	228151893	358104	0	+	0.69697	(0.58,1]	chr1	40434	14	INTRON	INTRON	GJC2	ENSG00000198835.4	ENST00000366714.3	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.84993	4.0787	5.30747	0.0297842	0.0196049	0.126591	0.0955413
chr10	75729646	75729746	4523460	0	+	0.39	(0.36,0.39]	chr10	432271	817	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	80	2	2.86942	4.0786	5.28778	0.0407706	0.0153841	0.135868	0.0869771
chr22	42888142	42888242	7823005	0	-	0.57	(0.523,0.58]	chr22	820584	1	SS5_PROX	SS5_PROX:INTRON	PACSIN2	ENSG00000100266.19	ENST00000337959.8:ENST00000263246.8:ENST00000407585.5:ENST00000403744.7:ENST00000402229.5:ENST00000634914.1	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	2.57767	4.078235	5.5788	0.090356	0.00262418	0.186369	0.0278348
chr7	127953014	127953113	3471257	0	+	0.565657	(0.523,0.58]	chr7	335423	34	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	67	2	2.6197	4.078175	5.53665	0.0853454	0.00291382	0.181766	0.0298557
chr9	133855187	133855287	4428950	0	-	0.59	(0.58,1]	chr9	423304	205	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.13234	4.07774	5.02314	0.0322188	0.00638322	0.121593	0.0501889
chr12	132528188	132528288	5352897	0	+	0.7	(0.58,1]	chr12	523669	2	SS5_PROX	SS5_PROX:INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	2.95313	4.07768	5.20223	0.0435972	0.00411607	0.139245	0.0374453
chrX	133936851	133936951	8115536	0	-	0.37	(0.36,0.39]	chrX	845529	1019	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	164	2	1.86402	4.07765	6.29128	0.0384552	0.0086512	0.141772	0.0623824
chr10	18562464	18562563	4642353	0	-	0.373737	(0.36,0.39]	chr10	443321	101	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	82	2	3.36071	4.077645	4.79458	0.0319648	0.0207145	0.121593	0.102713
chr8	128032871	128032970	3920208	0	+	0.565657	(0.523,0.58]	chr8	374311	2	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1	lncRNA	lncRNA	lncRNA	lncRNA	1	55	2	3.08569	4.07763	5.06957	0.0448011	0.020773	0.140478	0.102713
chr1	213989617	213989717	339371	0	+	0.57	(0.523,0.58]	chr1	38085	5	INTRON	INTRON	PROX1	ENSG00000117707.16	ENST00000471129.1:ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.03457	4.077535	5.1205	0.0416463	0.0231444	0.136301	0.109883
chr10	34683569	34683668	4670492	0	-	0.565657	(0.523,0.58]	chr10	445537	40	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.03457	4.077535	5.1205	0.0416463	0.0231444	0.136301	0.109883
chr6	166954694	166954791	3302040	0	-	0.525773	(0.523,0.58]	chr6	319750	23	EXON_MRNA	EXON_MRNA:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000358165.7:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	265	2	3.6299	4.0774	4.5249	0.0266135	0.00440344	0.118113	0.0430247
chr14	103107080	103107161	5921891	0	+	0.62963	(0.58,1]	chr14	579226	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	3.09402	4.07736	5.0607	0.029633	0.0174733	0.116079	0.0928044
chr17	81148392	81148492	6982986	0	-	0.65	(0.58,1]	chr17	713268	135	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	3.09402	4.07736	5.0607	0.029633	0.0174733	0.116079	0.0928044
chr15	53736947	53737046	6269690	0	-	0.444444	(0.419,0.45]	chr15	617903	34	INTRON	INTRON	WDR72	ENSG00000166415.15	ENST00000396328.5:ENST00000360509.10:ENST00000557913.5:ENST00000560036.1	protein_coding	protein_coding	protein_coding	protein_coding	1	73	2	2.75532	4.07733	5.39934	0.0800906	0.00646489	0.177372	0.0503748
chr7	138508904	138509004	3502490	0	+	0.43	(0.419,0.45]	chr7	337502	41	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	73	2	2.75532	4.07733	5.39934	0.0800906	0.00646489	0.177372	0.0503748
chr2	235515530	235515630	1062751	0	+	0.44	(0.419,0.45]	chr2	115651	203	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	76	2	3.00229	4.077215	5.15214	0.0572793	0.0109324	0.154343	0.0706366
chr10	103703505	103703605	4757135	0	-	0.53	(0.523,0.58]	chr10	454791	100	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	68	2	2.84901	4.0770800000000005	5.30515	0.0617545	0.00509102	0.158869	0.0433513
chr2	111251440	111251540	1251138	0	-	0.55	(0.523,0.58]	chr2	134830	28	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000673962.1:ENST00000674132.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000662889.1:ENST00000665096.1:ENST00000674092.1:ENST00000673958.1:ENST00000673770.1:ENST00000673961.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000656303.1:ENST00000666367.1:ENST00000666652.1:ENST00000669050.1:ENST00000667218.1:ENST00000656067.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000673700.1:ENST00000443467.6:ENST00000451884.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000655573.1:ENST00000656416.1:ENST00000662384.1	lncRNA	lncRNA	lncRNA	lncRNA	1	67	2	2.53438	4.07707	5.61976	0.0957531	0.00236826	0.189038	0.0259199
chr20	58698183	58698283	7498665	0	+	0.54	(0.523,0.58]	chr20	782003	1	SS3_PROX	SS3_PROX:INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	74	2	2.60398	4.07705	5.55012	0.0241539	0.0217068	0.112732	0.100615
chr1	43566199	43566298	107101	0	+	0.616162	(0.58,1]	chr1	13192	119	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	61	2	2.56085	4.077045	5.59324	0.0803939	0.0014734	0.177452	0.0185589
chr7	40056835	40056934	3353405	0	+	0.343434	(0.33,0.36]	chr7	324218	78	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000613626.4:ENST00000646039.1:ENST00000643859.1:ENST00000484589.2:ENST00000643915.1:ENST00000645470.1:ENST00000642592.1	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	2.56404	4.0770349999999995	5.59003	0.0954498	0.00344516	0.189038	0.0333853
chr16	50618604	50618704	6452114	0	+	0.56	(0.523,0.58]	chr16	639912	26	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	2.66054	4.07688	5.49322	0.0806884	0.00324246	0.177452	0.0319521
chr6	119242162	119242261	3246208	0	-	0.393939	(0.39,0.419]	chr6	314531	369	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	3	98	2	2.70145	4.076845	5.45224	0.032783	0.0140575	0.122593	0.0831509
chr4	3369975	3370072	2005136	0	+	0.391753	(0.39,0.419]	chr4	204664	2	UTR5	UTR5:EXON_MRNA:INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7:ENST00000338806.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	61	2	3.45562	4.0768	4.69798	0.088901	0.0107538	0.183874	0.0702857
chr8	127173989	127174089	4066726	0	-	0.5	(0.485,0.523]	chr8	387399	4	SS5_PROX	SS5_PROX:INTRON	CASC19	ENSG00000254166.3	ENST00000642100.1:ENST00000641912.1:ENST00000641421.1:ENST00000641701.1:ENST00000641991.1:ENST00000641588.1:ENST00000642088.1:ENST00000641425.1:ENST00000641706.1:ENST00000641496.1:ENST00000641013.1:ENST00000641262.1:ENST00000641174.1:ENST00000642102.1:ENST00000641615.1:ENST00000641582.1:ENST00000641487.1:ENST00000641321.1:ENST00000641719.1:ENST00000642010.1:ENST00000641578.1:ENST00000641510.1:ENST00000641604.1:ENST00000641056.1:ENST00000641642.1:ENST00000641362.1:ENST00000641365.1:ENST00000642077.1:ENST00000641179.1:ENST00000642126.1:ENST00000641411.1:ENST00000641357.1:ENST00000641746.2:ENST00000641073.1:ENST00000641298.1:ENST00000641001.1:ENST00000641674.2:ENST00000641828.1:ENST00000641029.1:ENST00000641547.1:ENST00000642134.1:ENST00000641696.1:ENST00000641480.1:ENST00000641187.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	103	2	2.02817	4.07669	6.12521	0.0416301	0.00823189	0.149021	0.0608959
chr12	132522337	132522437	5352837	0	+	0.68	(0.58,1]	chr12	523658	105	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	2.79178	4.076655000000001	5.36153	0.0565563	0.00273899	0.154343	0.028553
chr1	11023525	11023624	27797	0	+	0.393939	(0.39,0.419]	chr1	3255	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TARDBP	ENSG00000120948.19	ENST00000639083.1:ENST00000639599.1:ENST00000240185.8:ENST00000614757.4:ENST00000473869.5:ENST00000315091.7:ENST00000617172.4:ENST00000611963.4:ENST00000619555.4:ENST00000620632.4:ENST00000610369.4:ENST00000614494.1:ENST00000611136.4:ENST00000477447.6:ENST00000612542.1:ENST00000620505.1:ENST00000621573.1:ENST00000611008.4:ENST00000613177.1:ENST00000622108.1:ENST00000496840.1:ENST00000617757.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	499	2	3.58231	4.076535	4.57076	0.00785843	6.20831e-5	0.0594	0.00192479
chr8	42303098	42303197	3808264	0	+	0.484848	(0.45,0.485]	chr8	366561	92	INTRON	INTRON	IKBKB	ENSG00000104365.16	ENST00000520810.6:ENST00000629753.2:ENST00000517890.5:ENST00000520835.7:ENST00000523105.5:ENST00000519735.5:ENST00000519733.5:ENST00000518679.5:ENST00000517917.5:ENST00000342222.6:ENST00000520201.5:ENST00000518647.5:ENST00000517388.5:ENST00000521661.5:ENST00000520655.5:ENST00000517812.5:ENST00000522147.4:ENST00000523517.5:ENST00000416505.7:ENST00000649612.3:ENST00000648136.2:ENST00000676525.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	79	2	3.04016	4.076230000000001	5.1123	0.0458344	0.00944306	0.142336	0.0650078
chr7	213866	213965	3305793	0	+	0.50505	(0.485,0.523]	chr7	320161	45	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.30597	4.07604	4.84611	0.0608067	0.012958	0.158506	0.0778899
chrX	47220780	47220878	7877811	0	+	0.428571	(0.419,0.45]	chrX	825683	13	INTRON	INTRON	CDK16	ENSG00000102225.17	ENST00000517997.5:ENST00000517479.1:ENST00000457458.6:ENST00000522883.1:ENST00000520295.5:ENST00000357227.9:ENST00000519758.5:ENST00000520893.5:ENST00000517426.5:ENST00000522234.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	62	2	3.46155	4.07594	4.69033	0.0958674	0.0110249	0.189038	0.0711736
chr10	46805517	46805616	4484738	0	+	0.515152	(0.485,0.523]	chr10	428921	32	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000688259.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	147	2	3.60466	4.07588	4.5471	0.0185431	5.20483e-4	0.0929479	0.00899129
chr2	65405473	65405573	1171910	0	-	0.44	(0.419,0.45]	chr2	127582	249	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.7072600000000002	4.075865	5.44447	0.0496323	0.0364384	0.160725	0.128173
chr11	64039974	64040074	5047976	0	-	0.43	(0.419,0.45]	chr11	490253	243	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000543422.5:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	59	2	3.11129	4.07586	5.04043	0.0625897	0.023073	0.160305	0.109758
chr19	1415044	1415143	7187497	0	+	0.545455	(0.523,0.58]	chr19	731286	46	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	89	2	2.36236	4.0758	5.78924	0.0261999	0.0147166	0.117385	0.0826843
chr10	45857791	45857891	4678147	0	-	0.55	(0.523,0.58]	chr10	446183	25	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000610690.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	1	55	2	2.98158	4.075635	5.16969	0.0387762	0.0258432	0.131324	0.116361
chr16	81616402	81616501	6509460	0	+	0.575758	(0.523,0.58]	chr16	645921	55	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	55	2	2.98158	4.075635	5.16969	0.0387762	0.0258432	0.131324	0.116361
chr19	38667238	38667337	7258036	0	+	0.535354	(0.523,0.58]	chr19	743980	186	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	55	2	2.98158	4.075635	5.16969	0.0387762	0.0258432	0.131324	0.116361
chr19	8240485	8240563	7200286	0	+	0.717949	(0.58,1]	chr19	734189	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559490.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	183	2	3.46351	4.075615	4.68772	0.0022345	0.00143944	0.024843	0.0232806
chr13	113046121	113046216	5656094	0	+	0.526316	(0.523,0.58]	chr13	555176	9	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000480321.1:ENST00000397021.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	119	2	2.41506	4.075575	5.73609	0.0484646	0.0017613	0.145074	0.0211077
chr16	85236365	85236465	6515432	0	+	0.61	(0.58,1]	chr16	646377	86	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	69	2	3.40767	4.075565	4.74346	0.0197265	0.0121457	0.0958249	0.0754623
chr2	240623298	240623397	1075176	0	+	0.626263	(0.58,1]	chr2	116654	39	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	1	69	2	3.40767	4.075565	4.74346	0.0197265	0.0121457	0.0958249	0.0754623
chr19	9669646	9669745	7328082	0	-	0.626263	(0.58,1]	chr19	757385	84	INTRON	INTRON	ZNF562	ENSG00000171466.10	ENST00000453372.7:ENST00000293648.8:ENST00000590155.5:ENST00000585688.5:ENST00000587392.5:ENST00000588653.5:ENST00000589542.1:ENST00000585350.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	82	2	2.48391	4.075445	5.66698	0.0170246	0.0102927	0.0923809	0.0684871
chr17	40350617	40350713	6734466	0	+	0.708333	(0.58,1]	chr17	677354	3	INTRON	INTRON	RARA	ENSG00000131759.18	ENST00000254066.10:ENST00000394089.6:ENST00000425707.7:ENST00000394086.7:ENST00000394081.7:ENST00000475125.1	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.03676	4.0751550000000005	5.11355	0.0271806	0.0198789	0.112113	0.100864
chr4	73231005	73231105	2249720	0	-	0.31	(0.29,0.33]	chr4	226951	80	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000561029.1	protein_coding	protein_coding	protein_coding	protein_coding	2	75	2	2.79173	4.0751	5.35847	0.0269557	0.0163525	0.112113	0.0909775
chr3	188240662	188240761	1652665	0	+	0.484848	(0.45,0.485]	chr3	173754	1	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	2.76444	4.074735	5.38503	0.0308908	0.0178454	0.119556	0.0945384
chr20	21238189	21238289	7448897	0	+	0.32	(0.29,0.33]	chr20	775009	50	INTRON	INTRON	KIZ	ENSG00000088970.16	ENST00000619574.4:ENST00000620891.4:ENST00000611685.4:ENST00000616848.4:ENST00000619189.5:ENST00000616679.4:ENST00000619179.4:ENST00000621366.1:ENST00000451772.5:ENST00000419359.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	200	2	3.67338	4.074425	4.47547	0.00349012	0.00178488	0.0379065	0.0213279
chr17	72494258	72494358	6963243	0	-	0.43	(0.419,0.45]	chr17	710350	56	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000648907.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000650483.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000647593.1:ENST00000649311.1:ENST00000648520.1:ENST00000649250.1:ENST00000648069.1:ENST00000647953.1:ENST00000648176.2:ENST00000648403.1:ENST00000649269.1:ENST00000577828.6:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1:ENST00000650510.1:ENST00000649013.1:ENST00000647850.1:ENST00000648500.1	lncRNA	lncRNA	lncRNA	lncRNA	4	286	2	3.82361	4.074375	4.32514	0.0165146	2.15815e-4	0.0880991	0.00477041
chr3	82026196	82026296	1506637	0	+	0.33	(0.29,0.33]	chr3	160973	395	INTRON	INTRON	LINC02008	ENSG00000239440.6	ENST00000470263.5:ENST00000494340.2:ENST00000666519.1:ENST00000668833.1:ENST00000653255.1:ENST00000654980.1	lncRNA	lncRNA	lncRNA	lncRNA	1	59	2	3.56103	4.07436	4.58769	0.0806047	0.00731654	0.177452	0.0550721
chr8	8360184	8360284	3934208	0	-	0.47	(0.45,0.485]	chr8	376133	202	INTRON	INTRON	PRAG1	ENSG00000275342.5	ENST00000615670.5:ENST00000622241.1	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	2.46542	4.07436	5.6833	0.0337868	0.0195193	0.133182	0.0955413
chr9	134412394	134412493	4261557	0	+	0.69697	(0.58,1]	chr9	406352	29	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000481739.2:ENST00000356384.4:ENST00000672570.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	3.06331	4.074325	5.08534	0.036259	0.00549379	0.127941	0.0454065
chr14	104869855	104869955	5925910	0	+	0.5	(0.485,0.523]	chr14	579942	9	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.4289	4.07427	4.71964	0.0718646	0.00977282	0.168159	0.0664239
chr7	112206001	112206101	3692568	0	-	0.64	(0.58,1]	chr7	354971	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	129	2	3.93773	4.07386	4.20999	0.00708574	9.16802e-4	0.0558168	0.0133866
chr20	2130099	2130199	7416828	0	+	0.5	(0.485,0.523]	chr20	772568	123	INTRON	INTRON	STK35	ENSG00000125834.13	ENST00000381482.8:ENST00000493263.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	103	2	1.99696	4.07345	6.14994	0.0444208	0.00788098	0.153511	0.059464500000000003
chr18	13589440	13589540	7026487	0	+	0.54	(0.523,0.58]	chr18	717646	36	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000677744.1:ENST00000593236.1:ENST00000678400.1:ENST00000586207.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	82	2	3.53814	4.07341	4.60868	0.0226775	0.020829	0.108193	0.0990379
chr1	154233692	154233792	247539	0	+	0.37	(0.36,0.39]	chr1	28481	46	INTRON	INTRON	UBAP2L	ENSG00000143569.19	ENST00000343815.10:ENST00000271877.11:ENST00000613315.4:ENST00000441890.5:ENST00000412596.5:ENST00000368504.5:ENST00000428931.6:ENST00000437652.5:ENST00000456325.5:ENST00000361546.6	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.9032	4.0731850000000005	5.24317	0.0433841	0.0337607	0.138813	0.133139
chr10	59874169	59874269	4694515	0	-	0.39	(0.36,0.39]	chr10	447429	211	INTRON	INTRON	CCDC6	ENSG00000108091.11	ENST00000263102.7	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.9032	4.0731850000000005	5.24317	0.0433841	0.0337607	0.138813	0.133139
chr11	107425127	107425226	5116770	0	-	0.343434	(0.33,0.36]	chr11	496849	65	INTRON	INTRON	CWF19L2	ENSG00000152404.16	ENST00000282251.10:ENST00000431778.5:ENST00000532251.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	57	2	3.08687	4.073035	5.0592	0.0504445	0.0227116	0.148216	0.108285
chr2	165938458	165938557	1301068	0	-	0.343434	(0.33,0.36]	chr2	139566	9	INTRON	INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000679840.1:ENST00000680448.1:ENST00000681606.1:ENST00000679671.1:ENST00000464374.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	3.08687	4.073035	5.0592	0.0504445	0.0227116	0.148216	0.108285
chr16	69440652	69440752	6483758	0	+	0.43	(0.419,0.45]	chr16	643951	99	INTRON	INTRON	CYB5B	ENSG00000103018.18	ENST00000686649.1:ENST00000684784.1:ENST00000691260.1:ENST00000689149.1:ENST00000692677.1:ENST00000686167.1:ENST00000568342.3:ENST00000307892.13:ENST00000688840.1:ENST00000515314.7:ENST00000687677.1:ENST00000514123.5:ENST00000693607.1:ENST00000568237.2:ENST00000561792.7:ENST00000687780.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	61	2	3.39073	4.072815	4.7549	0.0888907	0.0128682	0.183874	0.0778066
chr10	96521174	96521273	4739814	0	-	0.393939	(0.39,0.419]	chr10	452337	32	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	3.38301	4.07279	4.76257	0.0822354	0.0126232	0.179396	0.0768792
chr7	77568583	77568682	3399566	0	+	0.414141	(0.39,0.419]	chr7	328384	40	INTRON	INTRON	PTPN12	ENSG00000127947.16	ENST00000248594.11:ENST00000460731.5:ENST00000523952.5:ENST00000433369.6:ENST00000415482.6:ENST00000435495.6:ENST00000418110.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	60	2	3.38301	4.07279	4.76257	0.0822354	0.0126232	0.179396	0.0768792
chr6	2162831	2162931	3084510	0	-	0.54	(0.523,0.58]	chr6	299521	377	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5	protein_coding	protein_coding	protein_coding	protein_coding	2	149	2	3.40026	4.072545	4.74483	0.0262178	2.83162e-4	0.110264	0.00581439
chr3	172074207	172074307	1627809	0	+	0.48	(0.45,0.485]	chr3	170535	269	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	56	2	3.03233	4.072315	5.1123	0.0458344	0.0244076	0.142336	0.113311
chr16	56383619	56383718	6593804	0	-	0.494949	(0.485,0.523]	chr16	659150	139	INTRON	INTRON	AMFR	ENSG00000159461.15	ENST00000290649.10:ENST00000492830.5:ENST00000567738.1:ENST00000566334.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	55	2	3.07448	4.072235	5.06999	0.0445854	0.0214987	0.140478	0.10537
chr18	48623806	48623904	7057504	0	+	0.489796	(0.485,0.523]	chr18	720299	18	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1:ENST00000589585.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	55	2	3.07448	4.072235	5.06999	0.0445854	0.0214987	0.140478	0.10537
chr19	46979491	46979591	7275368	0	+	0.51	(0.485,0.523]	chr19	747275	417	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	55	2	3.07448	4.072235	5.06999	0.0445854	0.0214987	0.140478	0.10537
chr16	30316524	30316624	6578112	0	-	0.51	(0.485,0.523]	chr16	657488	102	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	55	2	3.02337	4.072145	5.12092	0.0414411	0.023933	0.136301	0.111785
chr10	100229327	100229427	4747975	0	-	0.65	(0.58,1]	chr10	453689	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CHUK	ENSG00000213341.11	ENST00000370397.8	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	2.83384	4.0721	5.31036	0.0529065	0.00312721	0.14912	0.0311915
chr12	7158753	7158849	5167940	0	+	0.489583	(0.485,0.523]	chr12	502938	8	UTR3	UTR3:EXON_MRNA	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000537408.1:ENST00000331148.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	282	2	3.98888	4.07193	4.15498	0.00299588	7.07662e-4	0.0348875	0.0111742
chr10	75729546	75729646	4523459	0	+	0.45	(0.419,0.45]	chr10	432271	816	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	101	2	2.77979	4.0718700000000005	5.36395	0.0407485	0.0121944	0.135868	0.0757339
chr14	89513775	89513875	6029251	0	-	0.4	(0.39,0.419]	chr14	591496	197	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000555353.5:ENST00000555855.5	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.61462	4.071565	5.52851	0.0572875	0.029339	0.174149	0.116079
chr2	239274382	239274482	1391452	0	-	0.63	(0.58,1]	chr2	148740	228	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	51	2	3.25332	4.071385	4.88945	0.0388928	0.0120565	0.131324	0.0754623
chr6	519180	519280	3077332	0	-	0.65	(0.58,1]	chr6	299297	191	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.25332	4.071385	4.88945	0.0388928	0.0120565	0.131324	0.0754623
chr20	36574848	36574948	7471317	0	+	0.66	(0.58,1]	chr20	777918	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TGIF2	ENSG00000118707.11	ENST00000373874.6:ENST00000373872.9:ENST00000650844.1:ENST00000611732.4:ENST00000558028.5:ENST00000560025.1	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.70505	4.071285	5.43752	0.0165599	0.0156166	0.0917029	0.0849828
chr14	73350025	73350125	6003302	0	-	0.4	(0.39,0.419]	chr14	589050	264	INTRON	INTRON	NUMB	ENSG00000133961.21	ENST00000554546.5:ENST00000535282.5:ENST00000359560.7:ENST00000355058.7:ENST00000544991.7:ENST00000555238.6:ENST00000557597.5:ENST00000356296.8:ENST00000555394.5:ENST00000559312.5:ENST00000560335.5:ENST00000555738.6:ENST00000554521.6:ENST00000555859.5:ENST00000554394.5:ENST00000555307.5:ENST00000554315.5:ENST00000555987.5:ENST00000556112.5:ENST00000557774.5:ENST00000554818.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	73	2	2.92909	4.071265	5.21344	0.0609293	0.00893514	0.158506	0.0620271
chr17	57468101	57468201	6761893	0	+	0.42	(0.419,0.45]	chr17	682137	230	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	59	2	3.15468	4.071175	4.98767	0.0669167	0.0211324	0.16272	0.103778
chr2	113943058	113943157	881818	0	+	0.30303	(0.29,0.33]	chr2	99819	3	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.28897	4.07091	4.85285	0.0567079	0.0137233	0.154343	0.0814223
chr10	79223372	79223472	4533595	0	+	0.61	(0.58,1]	chr10	432457	67	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.97713	4.07083	5.16453	0.0249802	0.0226795	0.108193	0.10758
chr15	90035425	90035525	6183899	0	+	0.61	(0.58,1]	chr15	608320	282	INTRON	INTRON	ZNF710	ENSG00000140548.10	ENST00000268154.9:ENST00000559419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.97713	4.07083	5.16453	0.0249802	0.0226795	0.108193	0.10758
chr16	18844237	18844335	6560192	0	-	0.5	(0.485,0.523]	chr16	654007	14	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000563448.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	165	2	3.7132	4.070815	4.42843	0.00492265	0.00414448	0.0423296	0.0416647
chr20	49149087	49149187	7572607	0	-	0.49	(0.485,0.523]	chr20	791289	128	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	4	268	2	3.79754	4.07079	4.34404	0.00598944	2.47975e-4	0.0508715	0.00528107
chr10	79217773	79217873	4533539	0	+	0.48	(0.45,0.485]	chr10	432457	11	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	2.75654	4.070785000000001	5.38503	0.0419966	0.0308908	0.149115	0.119556
chr8	17177688	17177788	3761932	0	+	0.44	(0.419,0.45]	chr8	361312	144	INTRON	INTRON	ZDHHC2	ENSG00000104219.13	ENST00000262096.13:ENST00000523132.1:ENST00000522184.1	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.81936	4.070655	5.32195	0.0431627	0.0405181	0.145945	0.138403
chr15	55835940	55836037	6272301	0	-	0.494845	(0.485,0.523]	chr15	618219	13	INTRON	INTRON	NEDD4	ENSG00000069869.17	ENST00000435532.8:ENST00000338963.6:ENST00000508342.5:ENST00000503468.5:ENST00000508871.5:ENST00000648451.1:ENST00000506154.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	3.12385	4.07052	5.01719	0.0480495	0.0193526	0.144601	0.0994526
chr3	195710966	195711065	1665028	0	+	0.50505	(0.485,0.523]	chr3	174623	15	INTRON	INTRON	MUC20-OT1	ENSG00000242086.8	ENST00000420851.6:ENST00000431767.5:ENST00000451228.5:ENST00000438608.5:ENST00000445707.3:ENST00000630874.2:ENST00000432194.7:ENST00000420459.5:ENST00000424730.5:ENST00000417704.5:ENST00000595086.5:ENST00000600197.1:ENST00000594446.5:ENST00000629537.2:ENST00000627035.2:ENST00000631359.2:ENST00000629721.2:ENST00000597662.5:ENST00000599566.5:ENST00000600288.5:ENST00000626872.2:ENST00000630197.2:ENST00000594976.5:ENST00000612098.4:ENST00000615212.4:ENST00000594101.3:ENST00000628439.2:ENST00000631352.2:ENST00000626904.2:ENST00000600382.5:ENST00000627863.2:ENST00000628668.2:ENST00000628053.2:ENST00000625971.2:ENST00000630675.2:ENST00000597982.5:ENST00000630387.2:ENST00000626585.2:ENST00000595382.5:ENST00000627016.2:ENST00000626566.2:ENST00000625383.2:ENST00000626979.2:ENST00000628392.2:ENST00000627471.2:ENST00000625531.2:ENST00000626852.2:ENST00000593988.2:ENST00000626233.2:ENST00000628508.2:ENST00000628003.2:ENST00000631263.2:ENST00000629511.2:ENST00000627356.2:ENST00000631345.2:ENST00000631037.2:ENST00000626346.2:ENST00000628567.2:ENST00000432601.3:ENST00000627689.2:ENST00000628754.2:ENST00000629807.2:ENST00000628125.2:ENST00000630415.2:ENST00000627609.1:ENST00000627993.2:ENST00000628982.1:ENST00000597871.1:ENST00000455807.2:ENST00000627297.2:ENST00000625665.1:ENST00000626093.1	lncRNA	lncRNA	lncRNA	lncRNA	1	55	2	3.12385	4.07052	5.01719	0.0480495	0.0193526	0.144601	0.0994526
chr18	48920991	48921086	7157711	0	-	0.547368	(0.523,0.58]	chr18	727791	13	UTR3	UTR3:EXON_MRNA	SMAD7	ENSG00000101665.10	ENST00000262158.8:ENST00000545051.2:ENST00000591805.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	56	2	2.74768	4.070475	5.39327	0.0411359	0.0277354	0.147756	0.112851
chr2	233080396	233080496	1057413	0	+	0.51	(0.485,0.523]	chr2	115053	6	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000451407.4:ENST00000467393.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	55	2	2.97038	4.07025	5.17012	0.038581	0.0267011	0.131324	0.118343
chr10	103687539	103687639	4756971	0	-	0.63	(0.58,1]	chr10	454779	95	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	67	2	3.3216	4.07011	4.81862	0.0230709	0.0102696	0.102982	0.0678072
chr10	79228271	79228371	4533644	0	+	0.48	(0.45,0.485]	chr10	432457	116	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.5616	4.07007	5.57854	0.0598406	0.0230065	0.177269	0.102982
chr7	74495408	74495508	3391781	0	+	0.52	(0.485,0.523]	chr7	327343	409	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	2.70511	4.06982	5.43453	0.0258944	0.0195331	0.109555	0.1
chr7	73598844	73598934	3602845	0	-	0.622222	(0.58,1]	chr7	347628	8	INTRON	INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	128	2	3.87867	4.06978	4.26089	0.00797934	7.87512e-4	0.0596361	0.0120243
chr12	26528351	26528451	5398507	0	-	0.35	(0.33,0.36]	chr12	528527	327	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.13306	4.06974	5.00642	0.0542065	0.0206439	0.151733	0.102713
chr6	156992233	156992333	3051614	0	+	0.45	(0.419,0.45]	chr6	297029	67	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	80	2	2.77553	4.0697399999999995	5.36395	0.0407485	0.0195253	0.135868	0.0999784
chr9	129498401	129498464	4250760	0	+	0.52381	(0.523,0.58]	chr9	404723	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	77	2	3.0699	4.069735	5.06957	0.0448011	0.00819703	0.140478	0.0591729
chr16	89297871	89297971	6659784	0	-	0.58	(0.523,0.58]	chr16	666648	57	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	74	2	2.78812	4.06968	5.35124	0.0295772	0.0160129	0.116079	0.0894586
chr16	85371343	85371443	6516784	0	+	0.63	(0.58,1]	chr16	646391	120	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.47204	4.069509999999999	5.66698	0.0623526	0.0102927	0.181127	0.0684871
chr20	17945238	17945335	7532478	0	-	0.505155	(0.485,0.523]	chr20	786058	22	EXON_MRNA	EXON_MRNA:INTRON	SNX5	ENSG00000089006.17	ENST00000377768.7:ENST00000490175.5:ENST00000483485.5:ENST00000377759.9:ENST00000606570.1:ENST00000491090.5:ENST00000476648.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	114	2	1.87136	4.069495	6.26763	0.0487041	0.00639185	0.160725	0.0529032
chr17	17828577	17828676	6865809	0	-	0.545455	(0.523,0.58]	chr17	695923	46	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	3.37594	4.06942	4.7629	0.0272868	0.0167014	0.112327	0.0917029
chr1	48225984	48226083	120959	0	+	0.545455	(0.523,0.58]	chr1	15165	8	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	195	2	3.97092	4.069205	4.16749	0.00680947	7.25159e-4	0.0548177	0.0113618
chr5	73698873	73698973	2452419	0	+	0.63	(0.58,1]	chr5	244920	136	INTRON	INTRON	ARHGEF28	ENSG00000214944.10	ENST00000545377.5:ENST00000296794.10:ENST00000513042.7:ENST00000509848.5:ENST00000426542.6:ENST00000437974.5	protein_coding	protein_coding	protein_coding	protein_coding	3	82	2	2.30423	4.06899	5.83375	0.0260615	0.00751249	0.116811	0.0576451
chr2	55023189	55023289	1148259	0	-	0.41	(0.39,0.419]	chr2	125466	88	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	2	159	2	3.76896	4.068989999999999	4.36902	0.0168258	0.00115295	0.0885	0.0157112
chr12	132953949	132954048	5542071	0	-	0.484848	(0.45,0.485]	chr12	547064	53	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	68	2	2.57593	4.06898	5.56203	0.093234	0.00322991	0.188571	0.0319521
chr1	213125565	213125665	337800	0	+	0.36	(0.33,0.36]	chr1	38011	4	SS3_PROX	SS3_PROX:INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4:ENST00000490299.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	70	2	2.8623	4.068935	5.27557	0.0634783	0.00707628	0.161669	0.0540197
chr5	73783437	73783537	2453268	0	+	0.46	(0.45,0.485]	chr5	244950	23	INTRON	INTRON	ARHGEF28	ENSG00000214944.10	ENST00000545377.5:ENST00000296794.10:ENST00000513042.7:ENST00000426542.6:ENST00000437974.5	protein_coding	protein_coding	protein_coding	protein_coding	2	151	2	3.57937	4.068695	4.55802	0.0206537	5.63543e-4	0.0984724	0.00950156
chr12	113838083	113838182	5509249	0	-	0.636364	(0.58,1]	chr12	542458	144	INTRON	INTRON	RBM19	ENSG00000122965.11	ENST00000545145.6:ENST00000392561.7:ENST00000261741.10:ENST00000552384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	3.44157	4.068335	4.6951	0.0521567	0.00760198	0.148503	0.0561937
chr7	143386777	143386873	3510773	0	+	0.46875	(0.45,0.485]	chr7	338486	22	INTRON	INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	68	2	2.61676	4.068325	5.51989	0.0883035	0.00357389	0.183874	0.0342681
chr19	15643978	15644051	7215393	0	+	0.575342	(0.523,0.58]	chr19	737136	2	CDS	CDS:EXON_MRNA:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	304	2	3.70401	4.068255	4.4325	0.00173398	0.00154812	0.0257678	0.0192893
chr21	43752217	43752317	7624139	0	+	0.66	(0.58,1]	chr21	796774	3	SS3_PROX	SS3_PROX:INTRON	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000498040.5:ENST00000481512.5:ENST00000490666.5:ENST00000467908.1:ENST00000343528.10:ENST00000398078.7:ENST00000468392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	2.9908	4.067885	5.14497	0.0409591	0.00474658	0.136191	0.0413976
chr20	63730721	63730821	7509346	0	+	0.57	(0.523,0.58]	chr20	783515	212	INTRON	INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	93	2	2.82711	4.06753	5.30795	0.0315825	0.00878306	0.120781	0.0615125
chr12	105120597	105120697	5315182	0	+	0.32	(0.29,0.33]	chr12	517680	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WASHC4	ENSG00000136051.15	ENST00000311317.8:ENST00000550053.5:ENST00000332180.10:ENST00000620430.5:ENST00000547404.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	3.05751	4.067135	5.07676	0.0412683	0.0226356	0.136301	0.108193
chr12	120853734	120853834	5523821	0	-	0.33	(0.29,0.33]	chr12	544174	182	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.0064	4.06705	5.1277	0.0382902	0.0251671	0.131324	0.114704
chr11	18012675	18012762	5015386	0	-	0.758621	(0.58,1]	chr11	484707	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528200.5:ENST00000532265.5:ENST00000529728.5:ENST00000530613.5:ENST00000532389.5:ENST00000530925.5:ENST00000533328.5:ENST00000532212.5:ENST00000524716.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	52	2	2.78186	4.067	5.35214	0.0342923	0.0181452	0.13449	0.0921579
chr14	104869655	104869755	5925908	0	+	0.58	(0.523,0.58]	chr14	579942	7	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.55341	4.066995	4.58058	0.0860403	0.00716661	0.181766	0.0541871
chr17	72920248	72920348	6967491	0	-	0.49	(0.485,0.523]	chr17	710518	701	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	55	2	3.17158	4.066985	4.96239	0.0518747	0.017456	0.148503	0.0928044
chr6	47268579	47268679	3144092	0	-	0.42	(0.419,0.45]	chr6	306750	147	INTRON	INTRON	TNFRSF21	ENSG00000146072.6	ENST00000296861.2	protein_coding	protein_coding	protein_coding	protein_coding	6	148	2	2.50525	4.06665	5.62805	0.0280406	0.0121041	0.113651	0.0754623
chr15	67068512	67068612	6139101	0	+	0.52	(0.485,0.523]	chr15	603934	2	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.91537	4.06653	5.21769	0.0359739	0.0298565	0.127853	0.126732
chr6	7200212	7200312	2839008	0	+	0.31	(0.29,0.33]	chr6	277956	105	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000471433.5:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	69	2	3.05307	4.066520000000001	5.07997	0.0438985	0.00913217	0.139792	0.0632458
chr1	43594976	43595075	107400	0	+	0.555556	(0.523,0.58]	chr1	13240	20	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.86937	4.066345	5.26332	0.0337698	0.0324455	0.130548	0.124319
chr3	186575339	186575439	1649675	0	+	0.56	(0.523,0.58]	chr3	173438	1	SS3_PROX	SS3_PROX:INTRON	DNAJB11	ENSG00000090520.12	ENST00000439351.5:ENST00000495390.2:ENST00000464877.2:ENST00000680338.1:ENST00000265028.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	2.86937	4.066345	5.26332	0.0337698	0.0324455	0.130548	0.124319
chr19	1171433	1171532	7305767	0	-	0.626263	(0.58,1]	chr19	753058	24	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	2	127	2	3.66231	4.06616	4.47001	0.0122106	4.15967e-4	0.0752279	0.00768537
chr7	2378303	2378399	3308506	0	+	0.572917	(0.523,0.58]	chr7	320690	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	EIF3B	ENSG00000106263.19	ENST00000360876.9:ENST00000397011.2:ENST00000475415.5:ENST00000468611.5:ENST00000465670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	146	2	3.53814	4.0661249999999995	4.59411	0.020829	4.40994e-4	0.0990379	0.00800597
chr8	25246255	25246355	3774701	0	+	0.43	(0.419,0.45]	chr8	363472	21	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000410074.5:ENST00000481100.5	protein_coding	protein_coding	protein_coding	protein_coding	1	80	2	3.2131	4.065795	4.91849	0.0423761	0.0174488	0.13762	0.0928044
chr5	74639052	74639150	2691312	0	-	0.479592	(0.45,0.485]	chr5	265803	17	UTR5	UTR5:EXON_MRNA:INTRON	ENC1	ENSG00000171617.15	ENST00000618628.4:ENST00000510316.5:ENST00000302351.9:ENST00000651128.1:ENST00000537006.1:ENST00000508331.1:ENST00000509127.2	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	2.28891	4.065745	5.84258	0.0479351	0.0151085	0.159092	0.0841543
chr10	18557967	18558067	4642308	0	-	0.36	(0.33,0.36]	chr10	443321	56	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.51922	4.065665	5.61211	0.0659899	0.022456	0.189025	0.102751
chr14	89181106	89181206	6025902	0	-	0.36	(0.33,0.36]	chr14	591408	3	SS3_PROX	SS3_PROX:INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000556541.1:ENST00000555010.1:ENST00000557496.1:ENST00000557718.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	93	2	2.12031	4.06558	6.01085	0.0467883	0.011821	0.156817	0.0739406
chr17	72376371	72376470	6962045	0	-	0.393939	(0.39,0.419]	chr17	710285	171	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000648907.1:ENST00000650482.1	lncRNA	lncRNA	lncRNA	lncRNA	1	59	2	3.30655	4.06547	4.82439	0.0762206	0.0148983	0.174484	0.0847741
chr2	239086696	239086787	1389542	0	-	0.527473	(0.523,0.58]	chr2	148609	4	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000487617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	58	2	2.54344	4.06512	5.5868	0.0599121	0.020474	0.177269	0.0979776
chr1	95060173	95060273	539972	0	-	0.52	(0.485,0.523]	chr1	62878	182	INTRON	INTRON	ALG14	ENSG00000172339.10	ENST00000370205.6:ENST00000495856.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	2.7365	4.065095	5.39369	0.0423471	0.0275819	0.149195	0.112782
chr8	700594	700694	3932735	0	-	0.5	(0.485,0.523]	chr8	376054	76	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000524138.5:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	2.7365	4.065095	5.39369	0.0423471	0.0275819	0.149195	0.112782
chr8	133288442	133288531	4084209	0	-	0.640449	(0.58,1]	chr8	388354	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1:ENST00000674839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	218	2	2.78186	4.0648800000000005	5.3479	0.0342923	3.19209e-4	0.13449	0.0101777
chr17	66314817	66314917	6783552	0	+	0.34	(0.33,0.36]	chr17	684226	83	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	57	2	3.1778	4.064715	4.95163	0.0583482	0.0187975	0.155373	0.0980631
chr20	62959810	62959906	7508295	0	+	0.666667	(0.58,1]	chr20	783180	19	INTRON	INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	216	2	3.4018	4.064355	4.72691	0.00563175	1.84649e-4	0.0494884	0.0042795
chr20	62277877	62277977	7506887	0	+	0.49	(0.485,0.523]	chr20	782712	41	INTRON	INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	69	2	2.98607	4.064275	5.14248	0.0503063	0.00761903	0.148176	0.0561937
chr13	33377544	33377644	5686341	0	-	0.47	(0.45,0.485]	chr13	558234	176	INTRON	INTRON	ENSG00000230490	ENSG00000230490.4	ENST00000686875.1:ENST00000454681.2	lncRNA	lncRNA	lncRNA	lncRNA	1	56	2	2.87326	4.06418	5.2551	0.0373953	0.033576	0.133139	0.130656
chr2	3458084	3458181	711011	0	+	0.659794	(0.58,1]	chr2	83170	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000441099.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000479955.5:ENST00000497597.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	169	2	4.02619	4.06391	4.10163	0.00506731	4.06616e-4	0.0465789	0.00755833
chr17	72494556	72494656	6963246	0	-	0.39	(0.36,0.39]	chr17	710350	59	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000648907.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000650483.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000647593.1:ENST00000649311.1:ENST00000648520.1:ENST00000649250.1:ENST00000648069.1:ENST00000647953.1:ENST00000648176.2:ENST00000648403.1:ENST00000649269.1:ENST00000577828.6:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1:ENST00000650510.1:ENST00000649013.1:ENST00000647850.1:ENST00000648500.1	lncRNA	lncRNA	lncRNA	lncRNA	1	58	2	3.18563	4.063785	4.94194	0.064883	0.0191961	0.162218	0.0994526
chr10	103688437	103688537	4756980	0	-	0.55	(0.523,0.58]	chr10	454779	104	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	57	2	2.61478	4.063625	5.51247	0.052707	0.0230387	0.167062	0.102982
chr1	1271309	1271409	380704	0	-	0.48	(0.45,0.485]	chr1	42923	4	SS5_PROX	SS5_PROX:INTRON	UBE2J2	ENSG00000160087.21	ENST00000450390.6:ENST00000349431.11:ENST00000347370.6:ENST00000400929.6:ENST00000464036.5:ENST00000360466.6:ENST00000400930.8:ENST00000473215.5:ENST00000435198.5:ENST00000509720.5:ENST00000491779.5:ENST00000466752.5:ENST00000503294.5:ENST00000477894.5:ENST00000422076.5:ENST00000502382.1:ENST00000461142.3:ENST00000488418.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	75	2	2.58493	4.063395	5.54186	0.0263561	0.0243502	0.118015	0.106588
chr19	17482782	17482882	7220760	0	+	0.54	(0.523,0.58]	chr19	738259	117	INTRON	INTRON	SLC27A1	ENSG00000130304.17	ENST00000600277.5:ENST00000598424.5:ENST00000252595.12:ENST00000599380.5:ENST00000600297.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	59	2	2.46839	4.06294	5.65749	0.0683019	0.0182707	0.193274	0.0921579
chr10	1131599	1131697	4438403	0	+	0.540816	(0.523,0.58]	chr10	424830	24	UTR3	UTR3:EXON_MRNA	WDR37	ENSG00000047056.17	ENST00000358220.5:ENST00000263150.9:ENST00000650072.1	protein_coding	protein_coding	protein_coding	protein_coding	1	81	2	3.51606	4.06237	4.60868	0.0226775	0.0216194	0.108193	0.100615
chr10	34810476	34810576	4671763	0	-	0.47	(0.45,0.485]	chr10	445543	1137	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	2	75	2	2.54618	4.06236	5.57854	0.0285948	0.0230065	0.123344	0.102982
chr10	18557167	18557267	4642300	0	-	0.41	(0.39,0.419]	chr10	443321	48	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.07541	4.061885	5.04836	0.0494381	0.0126072	0.146515	0.0768036
chrX	1397924	1398024	7830140	0	+	0.43	(0.419,0.45]	chrX	822055	3	INTRON	INTRON	LINC00106	ENSG00000236871.7	ENST00000434938.7:ENST00000430235.7	lncRNA	lncRNA	lncRNA	lncRNA	4	109	2	2.00387	4.061885	6.1199	0.0489452	0.0132894	0.160725	0.0787251
chr10	79219173	79219273	4533553	0	+	0.59	(0.58,1]	chr10	432457	25	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	127	2	3.83792	4.0618	4.28568	0.00865536	7.30957e-4	0.0623824	0.0113963
chr6	519480	519580	3077335	0	-	0.66	(0.58,1]	chr6	299297	194	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	3	82	2	2.64367	4.061030000000001	5.47839	0.0145198	0.0114303	0.0823104	0.0724212
chr1	2254760	2254860	4759	0	+	0.62	(0.58,1]	chr1	1052	63	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	3.09824	4.06069	5.02314	0.0341637	0.00638322	0.125129	0.0501889
chr11	68366500	68366600	4882625	0	+	0.64	(0.58,1]	chr11	470566	4	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	72	2	3.5406	4.060425	4.58025	0.0172566	0.0154024	0.0923809	0.0849828
chr19	932842	932942	7185174	0	+	0.61	(0.58,1]	chr19	730740	1	SS5_PROX	SS5_PROX:INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	75	2	2.02776	4.06016	6.09256	0.0700362	0.00452436	0.195209	0.0436138
chr16	69699820	69699919	6485398	0	+	0.424242	(0.419,0.45]	chr16	644075	36	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000393742.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	498	2	3.77745	4.059915	4.34238	0.00612346	1.36627e-4	0.0517628	0.00345208
chr4	888351	888450	2178486	0	-	0.707071	(0.58,1]	chr4	220626	27	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	169	2	3.88652	4.059845	4.23317	0.00385004	6.2995e-4	0.0400681	0.0102646
chr6	2963657	2963744	3085792	0	-	0.528736	(0.523,0.58]	chr6	299658	4	UTR5	UTR5:EXON_MRNA:INTRON	SERPINB6	ENSG00000124570.21	ENST00000643098.1:ENST00000380546.7:ENST00000380539.7:ENST00000380529.5:ENST00000649845.1:ENST00000644178.1:ENST00000612421.3:ENST00000616722.4:ENST00000642543.1:ENST00000644388.1:ENST00000380520.6:ENST00000645580.1:ENST00000644693.1:ENST00000644828.1:ENST00000646775.1:ENST00000645421.1:ENST00000643227.1:ENST00000646688.1:ENST00000644777.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	3.27377	4.05973	4.84569	0.0610722	0.0137592	0.158506	0.0814923
chr16	29274812	29274912	6433585	0	+	0.57	(0.523,0.58]	chr16	636745	227	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	3	211	2	3.77525	4.05971	4.34417	0.00627762	9.01636e-4	0.0523832	0.0132389
chr16	46900181	46900281	6442584	0	+	0.56	(0.523,0.58]	chr16	639002	1	SS3_PROX	SS3_PROX:INTRON	GPT2	ENSG00000166123.14	ENST00000340124.9:ENST00000562132.5:ENST00000440783.2	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	2.918	4.05952	5.20104	0.0558053	0.00648051	0.154188	0.0503748
chr2	240623595	240623694	1075179	0	+	0.686869	(0.58,1]	chr2	116654	42	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	3	110	2	2.61371	4.059340000000001	5.50497	0.0271746	0.00187297	0.112113	0.0219434
chr16	50620801	50620901	6452136	0	+	0.61	(0.58,1]	chr16	639912	48	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	7	303	2	3.85437	4.059315	4.26426	0.00360545	1.1441e-4	0.0385302	0.00303071
chr11	61274584	61274684	5041325	0	-	0.55	(0.523,0.58]	chr11	488771	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	67	2	2.81323	4.05919	5.30515	0.0650388	0.00509102	0.162385	0.0433513
chr13	112913815	112913915	5654754	0	+	0.4	(0.39,0.419]	chr13	555099	33	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000442625.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	61	2	2.48186	4.058854999999999	5.63585	0.0717596	0.025023	0.199212	0.10758
chr2	222943146	222943246	1038556	0	+	0.41	(0.39,0.419]	chr2	113299	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ACSL3	ENSG00000123983.15	ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	150	2	1.72193	4.05872	6.39551	0.0548039	0.00743138	0.168604	0.057548
chr8	22138019	22138101	3952853	0	-	0.439024	(0.419,0.45]	chr8	377322	1	UTR3	UTR3:EXON_MRNA	REEP4	ENSG00000168476.12	ENST00000306306.8:ENST00000334530.9	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	2.97682	4.05866	5.1405	0.0550015	0.0125682	0.153337	0.076738700000000007
chr1	234474004	234474103	688615	0	-	0.474747	(0.45,0.485]	chr1	81056	8	INTRON	INTRON	TARBP1	ENSG00000059588.10	ENST00000040877.2	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.22036	4.058605	4.89685	0.0614781	0.016408	0.158506	0.0911382
chr10	75584445	75584545	4522003	0	+	0.44	(0.419,0.45]	chr10	432253	315	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	175	2	3.11154	4.058555	5.00557	0.0490796	2.20651e-4	0.146142	0.00485236
chr11	70738487	70738587	5061666	0	-	0.58	(0.523,0.58]	chr11	492701	206	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	2.68276	4.058435	5.43411	0.0464998	0.026041	0.156036	0.109673
chr11	70587129	70587229	5060144	0	-	0.56	(0.523,0.58]	chr11	492663	838	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	73	2	2.64274	4.05828	5.47382	0.0244797	0.0221922	0.108193	0.106683
chr15	28651987	28652087	6068878	0	+	0.46	(0.45,0.485]	chr15	596167	4	SS5_PROX	SS5_PROX:INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	2	76	2	2.3351	4.0580300000000005	5.78096	0.0438295	0.0166968	0.153511	0.0884836
chr16	89298667	89298767	6659792	0	-	0.52	(0.485,0.523]	chr16	666648	65	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	102	2	2.35793	4.057885	5.75784	0.0201394	0.0154142	0.101501	0.0849828
chr2	159764034	159764125	937781	0	+	0.263736	[0,0.29]	chr2	103591	7	INTRON	INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000420397.1:ENST00000478396.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	3.23227	4.057565	4.88286	0.041613	0.0143247	0.136301	0.0833845
chr22	24092178	24092260	7695280	0	+	0.646341	(0.58,1]	chr22	805503	3	SS5_PROX	SS5_PROX:INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.61009	4.05753	5.50497	0.0747426	0.00187297	0.172361	0.0219434
chr11	846669	846769	4786131	0	+	0.66	(0.58,1]	chr11	458423	1	SS3_PROX	SS3_PROX:INTRON	TSPAN4	ENSG00000214063.12	ENST00000397411.6:ENST00000397396.5:ENST00000397397.7:ENST00000397408.5:ENST00000530404.5:ENST00000525334.5:ENST00000397406.5:ENST00000409543.6:ENST00000525201.5:ENST00000397404.5	protein_coding	protein_coding	protein_coding	protein_coding	3	81	2	2.37881	4.057415	5.73602	0.0219036	0.00904546	0.106977	0.0637469
chr10	22536711	22536808	4645897	0	-	0.412371	(0.39,0.419]	chr10	443478	20	UTR3	UTR3:EXON_MRNA	PIP4K2A	ENSG00000150867.14	ENST00000376573.9:ENST00000323883.11	protein_coding	protein_coding	protein_coding	protein_coding	2	94	2	3.48402	4.057195	4.63037	0.0963077	0.00359214	0.189169	0.0342681
chr20	63897713	63897812	7509805	0	+	0.565657	(0.523,0.58]	chr20	783627	20	INTRON	INTRON	DNAJC5	ENSG00000101152.11	ENST00000360864.9:ENST00000470551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	73	2	2.56415	4.057135	5.55012	0.0263234	0.0217068	0.117901	0.100615
chr11	65430561	65430661	4871647	0	+	0.33	(0.29,0.33]	chr11	468177	79	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	22	1425	2	3.93712	4.056915	4.17671	0.00105998	5.90085e-5	0.0195642	0.00185031
chr16	16018819	16018919	6406695	0	+	0.45	(0.419,0.45]	chr16	633029	18	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	3.23773	4.0568550000000005	4.87598	0.0768574	0.0178095	0.174882	0.0943752
chr8	142667212	142667309	4095185	0	-	0.597938	(0.58,1]	chr8	389059	3	INTRON	INTRON	JRK	ENSG00000234616.9	ENST00000612905.2:ENST00000615982.4:ENST00000571961.7:ENST00000503272.1:ENST00000591357.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	3.35051	4.056675	4.76284	0.0471737	0.00953058	0.143232	0.0650078
chr1	17665994	17666093	54871	0	+	0.555556	(0.523,0.58]	chr1	5603	10	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	66	2	2.6197	4.0564599999999995	5.49322	0.0853454	0.00324246	0.181766	0.0319521
chr13	113051013	113051112	5656145	0	+	0.666667	(0.58,1]	chr13	555180	38	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.55596	4.056385	5.55681	0.0534085	0.0126042	0.167062	0.0761905
chr3	71129178	71129278	1826710	0	-	0.38	(0.36,0.39]	chr3	188138	162	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000475937.6:ENST00000327590.9:ENST00000648426.1:ENST00000497355.7:ENST00000648748.3:ENST00000649695.3:ENST00000498215.7:ENST00000484350.5:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000491238.8:ENST00000648384.1:ENST00000648380.1:ENST00000650188.1:ENST00000650068.2:ENST00000468577.6:ENST00000649592.1:ENST00000648794.2:ENST00000649513.1:ENST00000649431.2:ENST00000647614.1:ENST00000649760.1:ENST00000650295.1:ENST00000648895.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	82	2	3.063	4.056245	5.04949	0.0563927	0.00991943	0.154188	0.0666221
chr3	71413459	71413559	1829583	0	-	0.34	(0.33,0.36]	chr3	188242	528	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000649145.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	68	2	2.52202	4.056025	5.59003	0.100822	0.00344516	0.196131	0.0333853
chr10	91952066	91952163	4548583	0	+	0.350515	(0.33,0.36]	chr10	434020	1	INTRON	INTRON	BTAF1	ENSG00000095564.15	ENST00000265990.12	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	2.60488	4.05592	5.50696	0.090445	0.00418696	0.186505	0.0379935
chr10	130177757	130177855	4615950	0	+	0.387755	(0.36,0.39]	chr10	441040	23	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	70	2	2.70325	4.05577	5.40829	0.0824711	0.00581205	0.179396	0.0472624
chr10	73786283	73786382	4510076	0	+	0.666667	(0.58,1]	chr10	431566	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ZSWIM8	ENSG00000214655.11	ENST00000604729.6:ENST00000398706.6:ENST00000603114.5:ENST00000446546.2:ENST00000604524.5:ENST00000605216.5:ENST00000433366.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	2.84993	4.055655	5.26138	0.0297842	0.021217	0.126591	0.0996078
chr11	70815865	70815965	5062442	0	-	0.66	(0.58,1]	chr11	492713	83	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	2.56085	4.055315	5.54978	0.0803939	0.00165911	0.177452	0.0202545
chr2	32434995	32435095	748550	0	+	0.44	(0.419,0.45]	chr2	87223	1	SS3_PROX	SS3_PROX:INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1:ENST00000444173.5	protein_coding	protein_coding	protein_coding	protein_coding	2	81	2	2.92212	4.05508	5.18804	0.051668	0.0141969	0.148503	0.0833845
chr17	341052	341152	6821699	0	-	0.65	(0.58,1]	chr17	689627	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000577079.5:ENST00000573780.5:ENST00000575130.5:ENST00000575634.5	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	2.15496	4.05475	5.95454	0.0548868	0.0059453	0.168717	0.0506158
chr2	179211541	179211641	1327876	0	-	0.41	(0.39,0.419]	chr2	141710	193	INTRON	INTRON	SESTD1	ENSG00000187231.14	ENST00000428443.8:ENST00000440010.5:ENST00000435047.5:ENST00000452991.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	79	2	2.86732	4.05457	5.24182	0.0441194	0.01549	0.140174	0.0871517
chr10	131920184	131920283	4616218	0	+	0.545455	(0.523,0.58]	chr10	441069	72	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	66	2	2.66054	4.054495	5.44845	0.0806884	0.00361636	0.177452	0.0342681
chr10	75493696	75493796	4521095	0	+	0.48	(0.45,0.485]	chr10	432249	421	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	151	2	3.44977	4.0543949999999995	4.65902	0.0255605	4.2306e-4	0.109062	0.00776857
chr9	105276679	105276779	4205916	0	+	0.42	(0.419,0.45]	chr9	399474	314	INTRON	INTRON	SLC44A1	ENSG00000070214.16	ENST00000374724.1:ENST00000374723.5:ENST00000470972.5:ENST00000374720.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	72	2	2.75532	4.054245	5.35317	0.0800906	0.00714797	0.177372	0.0541241
chr21	44854212	44854311	7678374	0	-	0.313131	(0.29,0.33]	chr21	802742	22	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000397886.3	protein_coding	protein_coding	protein_coding	protein_coding	1	85	2	3.6812	4.054235	4.42727	0.0335282	0.0154153	0.133139	0.0849828
chr16	89301413	89301504	6659822	0	-	0.593407	(0.58,1]	chr16	666654	2	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	206	2	4.04163	4.054205	4.06678	0.00544536	1.81117e-4	0.0486855	0.00421416
chr1	9904706	9904806	398782	0	-	0.41	(0.39,0.419]	chr1	45393	116	INTRON	INTRON	CTNNBIP1	ENSG00000178585.15	ENST00000377263.6:ENST00000400904.7	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.34529	4.05393	4.76257	0.0822354	0.0137041	0.179396	0.0814223
chr13	75459274	75459374	5727777	0	-	0.37	(0.36,0.39]	chr13	561722	821	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	2	78	2	2.33887	4.0539000000000005	5.76893	0.0459241	0.0200694	0.154743	0.0971995
chrX	47221074	47221172	7877814	0	+	0.489796	(0.485,0.523]	chrX	825683	16	INTRON	INTRON	CDK16	ENSG00000102225.17	ENST00000517997.5:ENST00000517479.1:ENST00000457458.6:ENST00000522883.1:ENST00000520295.5:ENST00000357227.9:ENST00000519758.5:ENST00000520893.5:ENST00000517426.5:ENST00000522234.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	66	2	2.66276	4.053825	5.44489	0.0803133	0.00377098	0.177452	0.0353672
chr2	163710902	163711002	1296071	0	-	0.28	[0,0.29]	chr2	139073	987	INTRON	INTRON	FIGN	ENSG00000182263.14	ENST00000409634.5:ENST00000333129.4:ENST00000482917.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	55	2	3.48967	4.05358	4.61749	0.061376	0.00782751	0.158506	0.0574276
chr5	34952143	34952243	2399921	0	+	0.29	[0,0.29]	chr5	239669	18	EXON_LNCRNA	EXON_LNCRNA:INTRON	DNAJC21	ENSG00000168724.17	ENST00000648817.1:ENST00000382021.2:ENST00000642851.1:ENST00000642675.1:ENST00000642285.1:ENST00000646714.1:ENST00000512136.1:ENST00000506762.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	55	2	3.48967	4.05358	4.61749	0.061376	0.00782751	0.158506	0.0574276
chr16	4082170	4082270	6541452	0	-	0.43	(0.419,0.45]	chr16	650517	281	INTRON	INTRON	ADCY9	ENSG00000162104.10	ENST00000294016.8:ENST00000571467.1:ENST00000572288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	58	2	3.06656	4.053495	5.04043	0.0625897	0.0252325	0.160305	0.114921
chr2	134450141	134450240	898749	0	+	0.484848	(0.45,0.485]	chr2	101298	14	UTR3	UTR3:EXON_MRNA	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.46316	4.05331	4.64346	0.0850039	0.00952494	0.181766	0.0650078
chr6	143055911	143056011	3281633	0	-	0.46	(0.45,0.485]	chr6	317232	71	INTRON	INTRON	LINC01277	ENSG00000229017.7	ENST00000657496.1	lncRNA	lncRNA	lncRNA	lncRNA	1	58	2	3.46316	4.05331	4.64346	0.0850039	0.00952494	0.181766	0.0650078
chr15	28279567	28279667	6207804	0	-	0.46	(0.45,0.485]	chr15	611277	1	SS5_PROX	SS5_PROX:INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13:ENST00000564734.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	75	2	2.42327	4.053285	5.6833	0.0367983	0.0195193	0.139793	0.0955413
chr9	83500514	83500614	4325556	0	-	0.44	(0.419,0.45]	chr9	413150	329	INTRON	INTRON	FRMD3	ENSG00000172159.16	ENST00000376438.5:ENST00000304195.8	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.58571	4.0532200000000005	5.52073	0.0613171	0.0327198	0.18013	0.122543
chr1	9556600	9556700	20526	0	+	0.44	(0.419,0.45]	chr1	2233	24	INTRON	INTRON	SLC25A33	ENSG00000171612.7	ENST00000302692.7	protein_coding	protein_coding	protein_coding	protein_coding	3	227	2	3.564	4.053084999999999	4.54217	0.00489639	0.00310116	0.0457614	0.0311614
chr20	34568339	34568438	7547111	0	-	0.494949	(0.485,0.523]	chr20	787854	70	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.67159	4.05306	5.43453	0.0478226	0.0258944	0.1588	0.109555
chr5	151079972	151080072	2790679	0	-	0.52	(0.485,0.523]	chr5	273788	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TNIP1	ENSG00000145901.16	ENST00000521591.6:ENST00000520931.5:ENST00000389378.6:ENST00000610874.4:ENST00000315050.11:ENST00000523338.5:ENST00000610535.5:ENST00000522226.5:ENST00000518977.5:ENST00000522100.5:ENST00000520695.5:ENST00000521001.1:ENST00000522926.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	2.67159	4.05306	5.43453	0.0478226	0.0258944	0.1588	0.109555
chr19	17484909	17485005	7220782	0	+	0.666667	(0.58,1]	chr19	738265	4	INTRON	INTRON	SLC27A1	ENSG00000130304.17	ENST00000600277.5:ENST00000598424.5:ENST00000252595.12:ENST00000599380.5:ENST00000600297.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	2.71042	4.0529399999999995	5.39546	0.0396128	0.0168207	0.143388	0.0884836
chr1	43554441	43554540	106983	0	+	0.626263	(0.58,1]	chr1	13192	1	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	70	2	2.27185	4.0528	5.83375	0.0433824	0.00751249	0.152119	0.0576451
chr7	137998858	137998958	3720691	0	-	0.52	(0.485,0.523]	chr7	357307	651	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.07952	4.052625	5.02573	0.0436257	0.00985879	0.139286	0.0664239
chr11	70865819	70865919	5062944	0	-	0.51	(0.485,0.523]	chr11	492724	391	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000425049.1:ENST00000645599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	73	2	2.59183	4.052365	5.5129	0.0250389	0.0229047	0.114418	0.102982
chr5	32158263	32158363	2630497	0	-	0.36	(0.33,0.36]	chr5	261026	140	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	204	2	4.03904	4.05231	4.06558	0.00955488	7.05085e-4	0.0658012	0.0111409
chr6	144464261	144464361	3021676	0	+	0.47	(0.45,0.485]	chr6	295268	10	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.49029	4.0523	5.61431	0.0676934	0.0217589	0.193219	0.100615
chr2	69639677	69639777	1177194	0	-	0.54	(0.523,0.58]	chr2	128070	823	INTRON	INTRON	AAK1	ENSG00000115977.21	ENST00000409085.9:ENST00000606389.7:ENST00000409068.5:ENST00000406297.7:ENST00000495836.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	73	2	2.75313	4.052185	5.35124	0.0295772	0.0173428	0.116079	0.0927775
chr3	172115087	172115187	1628220	0	+	0.53	(0.523,0.58]	chr3	170543	21	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	74	2	2.34664	4.05203	5.75742	0.0413259	0.0155135	0.148318	0.0849828
chr11	62841468	62841568	5046875	0	-	0.37	(0.36,0.39]	chr11	490099	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	WDR74	ENSG00000133316.16	ENST00000525239.5:ENST00000538098.2	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	2.95428	4.0519300000000005	5.14958	0.0493212	0.0305895	0.146207	0.126768
chr20	3805831	3805927	7421612	0	+	0.53125	(0.523,0.58]	chr20	773159	10	UTR3	UTR3:EXON_MRNA	CDC25B	ENSG00000101224.18	ENST00000344256.10:ENST00000379598.9:ENST00000439880.6:ENST00000245960.10	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	2.48104	4.05181	5.62258	0.0313926	0.0193313	0.127822	0.0954446
chr6	47232764	47232864	3143731	0	-	0.5	(0.485,0.523]	chr6	306734	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA	TNFRSF21	ENSG00000146072.6	ENST00000296861.2	protein_coding	protein_coding	protein_coding	protein_coding	5	149	2	3.14112	4.051755	4.96239	0.0518747	0.00212661	0.148503	0.0240298
chr9	135939372	135939472	4431901	0	-	0.66	(0.58,1]	chr9	423567	3	SS5_PROX	SS5_PROX:INTRON	UBAC1	ENSG00000130560.9	ENST00000371756.4:ENST00000489050.5:ENST00000465873.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	55	2	2.47204	4.05161	5.63118	0.0623526	0.0109983	0.181127	0.0708586
chr10	7722373	7722469	4442140	0	+	0.510417	(0.485,0.523]	chr10	425524	2	INTRON	INTRON	ITIH2	ENSG00000151655.19	ENST00000358415.9:ENST00000379587.4	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	3.08589	4.05154	5.01719	0.0480495	0.00799823	0.144601	0.0580954
chr2	218583286	218583386	1034175	0	+	0.39	(0.36,0.39]	chr2	112349	2	SS5_PROX	SS5_PROX:INTRON	CNOT9	ENSG00000144580.14	ENST00000627282.2:ENST00000542068.5:ENST00000273064.11:ENST00000432877.5:ENST00000295701.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	77	2	2.6108	4.05152	5.49224	0.0304242	0.0267696	0.118624	0.11845
chr2	239279978	239280078	1391508	0	-	0.6	(0.58,1]	chr2	148740	284	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	126	2	3.8171	4.05139	4.28568	0.0090206	7.30957e-4	0.0637469	0.0113963
chr19	40055761	40055847	7379006	0	-	0.476744	(0.45,0.485]	chr19	765547	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF780B	ENSG00000128000.17	ENST00000434248.6:ENST00000221355.10:ENST00000598845.5:ENST00000594811.1:ENST00000593605.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	76	2	2.89353	4.051295	5.20906	0.0399616	0.0133199	0.133954	0.0799309
chr5	95763720	95763820	2484995	0	+	0.25	[0,0.29]	chr5	247572	1	SS5_PROX	SS5_PROX:INTRON	RHOBTB3	ENSG00000164292.13	ENST00000379982.8	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	2.42686	4.05127	5.67568	0.0991518	0.00174548	0.194208	0.0210473
chr7	100353554	100353646	3429965	0	+	0.565217	(0.523,0.58]	chr7	331808	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STAG3L5P-PVRIG2P-PILRB:PILRB	ENSG00000272752.6:ENSG00000121716.21	ENST00000310771.8:ENST00000444874.5:ENST00000472646.1:ENST00000452089.5:ENST00000493091.5:ENST00000457519.5:ENST00000448382.5:ENST00000419749.5:ENST00000422808.5:ENST00000438028.5:ENST00000443526.5:ENST00000455145.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	1	54	2	3.08569	4.05123	5.01677	0.0482765	0.020773	0.144601	0.102713
chr11	68332571	68332671	4882283	0	+	0.55	(0.523,0.58]	chr11	470542	194	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	108	2	3.01352	4.05117	5.08882	0.0248299	0.00834774	0.10758	0.0598672
chr21	45451425	45451525	7630777	0	+	0.7	(0.58,1]	chr21	797656	456	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.79178	4.05107	5.31036	0.0565563	0.00312721	0.154343	0.0311915
chr16	46918320	46918420	6442771	0	+	0.56	(0.523,0.58]	chr16	639025	3	SS3_PROX	SS3_PROX:INTRON	GPT2	ENSG00000166123.14	ENST00000340124.9:ENST00000440783.2:ENST00000562801.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	54	2	2.98158	4.05104	5.1205	0.0416463	0.0258432	0.136301	0.116361
chr19	2204655	2204753	7188905	0	+	0.530612	(0.523,0.58]	chr19	731581	15	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.98158	4.05104	5.1205	0.0416463	0.0258432	0.136301	0.116361
chr11	47415457	47415551	4855982	0	+	0.617021	(0.58,1]	chr11	464888	2	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SLC39A13	ENSG00000165915.14	ENST00000533076.5:ENST00000362021.9:ENST00000354884.8:ENST00000524928.1	protein_coding	protein_coding	protein_coding	protein_coding	4	201	2	3.79161	4.050645	4.30968	0.00327429	4.08762e-4	0.0366935	0.00759401
chr11	31678496	31678595	4833752	0	+	0.414141	(0.39,0.419]	chr11	462159	142	INTRON	INTRON	ELP4	ENSG00000109911.19	ENST00000639878.1:ENST00000379163.10:ENST00000350638.10:ENST00000638347.1:ENST00000640961.2:ENST00000640081.1:ENST00000640342.1:ENST00000640231.1:ENST00000638917.1:ENST00000395934.2:ENST00000640954.1:ENST00000638184.1:ENST00000638984.1:ENST00000640790.1:ENST00000639097.1:ENST00000638828.1:ENST00000639182.1:ENST00000638317.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	2.95235	4.05029	5.14823	0.0501234	0.0307567	0.147892	0.12741
chr2	240625280	240625379	1075196	0	+	0.646465	(0.58,1]	chr2	116654	59	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	2	130	2	4.01623	4.05027	4.08431	0.00525202	0.00161478	0.0476984	0.0199131
chr10	102651668	102651768	4576541	0	+	0.62	(0.58,1]	chr10	437284	20	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1:ENST00000487927.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	67	2	2.70505	4.050255	5.39546	0.0168207	0.0165599	0.0917029	0.0884836
chr19	2334721	2334821	7189468	0	+	0.7	(0.58,1]	chr19	731780	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	67	2	2.66286	4.05019	5.43752	0.0183006	0.0156166	0.0958973	0.0849828
chr4	101235396	101235496	2292032	0	-	0.36	(0.33,0.36]	chr4	230561	389	INTRON	INTRON	PPP3CA	ENSG00000138814.17	ENST00000512215.5:ENST00000394854.8:ENST00000323055.10:ENST00000394853.8:ENST00000507176.5:ENST00000529324.5:ENST00000525819.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.98982	4.04997	5.11012	0.04702	0.027642	0.143232	0.120359
chr19	1415806	1415873	7187505	0	+	0.656716	(0.58,1]	chr19	731287	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5:ENST00000587833.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	3.09402	4.049935	5.00585	0.0323732	0.0174733	0.121593	0.0928044
chr2	3289413	3289512	1081001	0	-	0.626263	(0.58,1]	chr2	117633	67	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	50	2	3.09402	4.049935	5.00585	0.0323732	0.0174733	0.121593	0.0928044
chr9	124488188	124488288	4402604	0	-	0.61	(0.58,1]	chr9	419805	48	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	3.09402	4.049935	5.00585	0.0323732	0.0174733	0.121593	0.0928044
chr9	124497906	124498005	4402704	0	-	0.606061	(0.58,1]	chr9	419817	44	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	3.09402	4.049935	5.00585	0.0323732	0.0174733	0.121593	0.0928044
chr16	895866	895966	6530980	0	-	0.68	(0.58,1]	chr16	648670	24	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000566627.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	68	2	2.93515	4.04984	5.16453	0.0249802	0.00938921	0.10758	0.064735
chr9	120510461	120510561	4385046	0	-	0.48	(0.45,0.485]	chr9	418390	186	INTRON	INTRON	CDK5RAP2	ENSG00000136861.19	ENST00000349780.9:ENST00000360190.8:ENST00000687279.1:ENST00000687633.1:ENST00000684780.1:ENST00000687311.1:ENST00000690814.1:ENST00000686842.1:ENST00000693714.1:ENST00000693386.1:ENST00000692746.1:ENST00000686376.1:ENST00000692155.1:ENST00000690646.1:ENST00000693433.1:ENST00000688923.1:ENST00000473282.6:ENST00000480112.5:ENST00000685866.1:ENST00000689688.1:ENST00000416449.6:ENST00000691504.1:ENST00000360822.8:ENST00000693728.1:ENST00000483412.5:ENST00000690474.1:ENST00000693137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	56	2	2.75654	4.049775	5.34301	0.0419966	0.0328801	0.149115	0.122593
chr6	37924985	37925084	2909895	0	+	0.434343	(0.419,0.45]	chr6	285645	94	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.11129	4.04948	4.98767	0.0669167	0.023073	0.16272	0.109758
chr6	107892981	107893081	3225100	0	-	0.34	(0.33,0.36]	chr6	312610	1	SS5_PROX	SS5_PROX:INTRON	SEC63	ENSG00000025796.14	ENST00000369002.9	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.26334	4.04936	4.83538	0.0679743	0.0156643	0.164413	0.0878971
chr3	58009655	58009755	1483050	0	+	0.5	(0.485,0.523]	chr3	159572	4	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	273	2	4.04734	4.049135	4.05093	0.00367424	5.97358e-4	0.0389784	0.00992038
chr7	6700620	6700720	3542719	0	-	0.43	(0.419,0.45]	chr7	342315	4	SS5_PROX	SS5_PROX:INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000404360.5:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.81936	4.04902	5.27868	0.0457732	0.0405181	0.145945	0.142336
chr1	43980424	43980519	110960	0	+	0.589474	(0.58,1]	chr1	13804	5	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	B4GALT2	ENSG00000117411.18	ENST00000498543.1:ENST00000434555.7:ENST00000372324.6:ENST00000481924.2:ENST00000497866.6:ENST00000485678.6:ENST00000356836.10:ENST00000309519.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	3.1491	4.04896	4.94882	0.0354433	0.0154006	0.127188	0.0869771
chr16	67967552	67967648	6610227	0	-	0.635417	(0.58,1]	chr16	661575	8	INTRON	INTRON	SLC12A4	ENSG00000124067.17	ENST00000422611.6:ENST00000316341.8:ENST00000572037.5:ENST00000570802.5:ENST00000576616.5:ENST00000573023.6:ENST00000576377.1:ENST00000571299.5:ENST00000572010.5:ENST00000576462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	67	2	2.6194	4.048895	5.47839	0.0202577	0.0145198	0.102015	0.0823104
chr2	54579377	54579477	799508	0	+	0.46	(0.45,0.485]	chr2	90800	201	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7:ENST00000333896.5	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.38668	4.04889	4.7111	0.0781398	0.0113463	0.175203	0.0719708
chr2	152404591	152404691	926157	0	+	0.43	(0.419,0.45]	chr2	103058	685	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	2	79	2	2.77553	4.0487400000000004	5.32195	0.0431627	0.0195253	0.138403	0.0999784
chr10	92691910	92692001	4550921	0	+	0.659341	(0.58,1]	chr10	434378	2	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	HHEX	ENSG00000152804.11	ENST00000282728.10:ENST00000551454.1:ENST00000472590.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	3.03676	4.04873	5.0607	0.029633	0.0198789	0.116079	0.100864
chr11	901747	901847	4970033	0	-	0.62	(0.58,1]	chr11	480934	2	SS5_PROX	SS5_PROX:INTRON	CHID1	ENSG00000177830.18	ENST00000323578.13:ENST00000449825.5:ENST00000454838.6:ENST00000429789.6:ENST00000528581.5:ENST00000436108.6:ENST00000526714.5:ENST00000524832.5:ENST00000531859.5:ENST00000534254.5:ENST00000528426.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	50	2	3.03676	4.04873	5.0607	0.029633	0.0198789	0.116079	0.100864
chr20	58696388	58696487	7498647	0	+	0.585859	(0.58,1]	chr20	782002	14	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	50	2	3.03676	4.04873	5.0607	0.029633	0.0198789	0.116079	0.100864
chr7	47524436	47524536	3589057	0	-	0.61	(0.58,1]	chr7	346138	171	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	3.03676	4.04873	5.0607	0.029633	0.0198789	0.116079	0.100864
chr9	133803189	133803289	4428423	0	-	0.63	(0.58,1]	chr9	423268	50	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	3.03676	4.04873	5.0607	0.029633	0.0198789	0.116079	0.100864
chr4	153486485	153486585	2151083	0	+	0.55	(0.523,0.58]	chr4	217962	122	INTRON	INTRON	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000445960.5:ENST00000409959.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	68	2	2.9513	4.04866	5.14602	0.0531089	0.00734367	0.149478	0.0550721
chr3	195113150	195113250	1981142	0	-	0.56	(0.523,0.58]	chr3	201655	191	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000437101.5:ENST00000473200.1:ENST00000429994.5:ENST00000356740.5:ENST00000418940.5:ENST00000491138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	57	2	3.51663	4.048605	4.58058	0.0860403	0.00782908	0.181766	0.0574276
chr16	56763436	56763535	6463685	0	+	0.444444	(0.419,0.45]	chr16	640945	44	INTRON	INTRON	NUP93	ENSG00000102900.13	ENST00000563858.5:ENST00000308159.10:ENST00000566315.5:ENST00000569842.5:ENST00000569863.5:ENST00000562496.5:ENST00000568656.5:ENST00000566678.1	protein_coding	protein_coding	protein_coding	protein_coding	2	99	2	2.33695	4.0481549999999995	5.75936	0.0825989	0.00285253	0.179401	0.0294017
chr9	136826326	136826416	4262672	0	+	0.633333	(0.58,1]	chr9	406661	1	INTRON	INTRON	RABL6	ENSG00000196642.19	ENST00000371671.9:ENST00000311502.12:ENST00000484471.6:ENST00000371663.10:ENST00000357466.6:ENST00000464941.5:ENST00000629216.2:ENST00000436380.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	69	2	2.32693	4.048135	5.76934	0.038688	0.00849371	0.142489	0.0617717
chr6	13590212	13590307	2855849	0	+	0.536842	(0.523,0.58]	chr6	279046	8	INTRON	INTRON	SIRT5	ENSG00000124523.17	ENST00000680432.1:ENST00000681012.1:ENST00000397350.7:ENST00000680442.1:ENST00000680754.1:ENST00000679658.1:ENST00000681243.1:ENST00000680747.1:ENST00000681818.1:ENST00000680402.1:ENST00000679663.1:ENST00000379250.10:ENST00000680852.1:ENST00000679922.1:ENST00000681231.1:ENST00000359782.8:ENST00000606117.2:ENST00000379262.8:ENST00000681905.1:ENST00000680937.1:ENST00000680151.1:ENST00000680707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	54	2	2.92656	4.048125	5.16969	0.0387762	0.0289226	0.131324	0.124
chr16	81548980	81549080	6508783	0	+	0.52	(0.485,0.523]	chr16	645911	531	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	3	88	2	2.21468	4.047915	5.88115	0.0363164	0.012541	0.139793	0.0761905
chr19	18362990	18363090	7223698	0	+	0.43	(0.419,0.45]	chr19	739110	2	SS3_PROX	SS3_PROX:INTRON	PGPEP1	ENSG00000130517.14	ENST00000269919.11:ENST00000604499.6:ENST00000252813.5:ENST00000596962.5:ENST00000600283.6:ENST00000597431.2:ENST00000597663.2:ENST00000595552.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	166	2	4.04635	4.047855	4.04936	0.0114517	0.0027809	0.0723886	0.0287781
chr16	8835532	8835632	6382749	0	+	0.47	(0.45,0.485]	chr16	631333	64	INTRON	INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000683435.1:ENST00000683094.1:ENST00000566604.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000567697.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	2.62955	4.0475650000000005	5.46558	0.0530416	0.0273644	0.167062	0.112372
chr12	132544216	132544316	5353058	0	+	0.57	(0.523,0.58]	chr12	523670	159	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	2.43762	4.047555	5.65749	0.0343548	0.0182707	0.134666	0.0921579
chr6	2094787	2094887	3083827	0	-	0.42	(0.419,0.45]	chr6	299503	515	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.27753	4.04712	4.81671	0.08258	0.0163857	0.179396	0.0910838
chr16	4083069	4083169	6541461	0	-	0.39	(0.36,0.39]	chr16	650517	290	INTRON	INTRON	ADCY9	ENSG00000162104.10	ENST00000294016.8:ENST00000571467.1:ENST00000572288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	57	2	3.09749	4.047105	4.99672	0.0604395	0.023009	0.158506	0.109581
chr1	8758333	8758433	395140	0	-	0.47	(0.45,0.485]	chr1	45073	46	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.03233	4.046855	5.06138	0.0492008	0.0244076	0.146142	0.113311
chr11	70788049	70788149	5062162	0	-	0.55	(0.523,0.58]	chr11	492701	702	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	57	2	2.54344	4.04678	5.55012	0.0599121	0.0217068	0.177269	0.100615
chr11	72040657	72040710	5067515	0	-	0.45283	(0.45,0.485]	chr11	493006	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	NUMA1	ENSG00000137497.19	ENST00000393695.8:ENST00000358965.10:ENST00000351960.10:ENST00000613205.4:ENST00000542977.5:ENST00000537217.5:ENST00000540843.5:ENST00000534987.5:ENST00000536119.5:ENST00000544238.5:ENST00000543937.5:ENST00000543009.5:ENST00000537930.5:ENST00000535947.5:ENST00000535087.5:ENST00000368959.9:ENST00000541719.5:ENST00000366394.7:ENST00000541641.5:ENST00000537905.5:ENST00000535111.5:ENST00000535838.5:ENST00000546131.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	55	2	2.98123	4.046765000000001	5.1123	0.0458344	0.0270875	0.142336	0.119337
chr2	42748133	42748233	777272	0	+	0.53	(0.523,0.58]	chr2	89190	247	INTRON	INTRON	MTA3	ENSG00000057935.14	ENST00000405592.5:ENST00000406652.5:ENST00000405094.2:ENST00000409019.5:ENST00000467925.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	66	2	2.7389	4.04671	5.35452	0.072318	0.00453096	0.168347	0.0400651
chr9	136007631	136007730	4432148	0	-	0.515152	(0.485,0.523]	chr9	423617	12	UTR3	UTR3:EXON_MRNA	NACC2	ENSG00000148411.8	ENST00000277554.4:ENST00000371753.5	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.02337	4.04668	5.06999	0.0445854	0.023933	0.140478	0.111785
chr19	18509723	18509823	7348293	0	-	0.63	(0.58,1]	chr19	761503	339	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	185	2	3.85672	4.046195	4.23567	0.00334874	8.49275e-4	0.0369107	0.0126615
chr4	183228797	183228897	2168694	0	+	0.43	(0.419,0.45]	chr4	219512	194	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000508614.5:ENST00000448232.6:ENST00000513834.5:ENST00000427431.5:ENST00000438543.5:ENST00000504005.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	59	2	2.64776	4.046115	5.44447	0.0551054	0.0364384	0.169163	0.128173
chr2	62813996	62814096	815040	0	+	0.42	(0.419,0.45]	chr2	92095	420	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000449820.5:ENST00000426940.5:ENST00000413434.5:ENST00000405482.5:ENST00000494958.1:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	163	2	3.93184	4.0459	4.15996	0.0138416	0.00210951	0.0804346	0.0239744
chr13	97369449	97369549	5632286	0	+	0.36	(0.33,0.36]	chr13	553226	25	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000449284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	58	2	3.38283	4.045885	4.70894	0.0798152	0.0120576	0.176933	0.0754623
chr8	128033465	128033564	3920214	0	+	0.545455	(0.523,0.58]	chr8	374311	8	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1	lncRNA	lncRNA	lncRNA	lncRNA	1	56	2	3.44013	4.04585	4.65157	0.0787008	0.00938609	0.175203	0.064735
chr9	35728900	35728999	4298433	0	-	0.50505	(0.485,0.523]	chr9	411216	28	INTRON	INTRON	TLN1	ENSG00000137076.21	ENST00000314888.10:ENST00000378192.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	54	2	3.07448	4.045835	5.01719	0.0480495	0.0214987	0.144601	0.10537
chr15	68820497	68820597	6312160	0	-	0.69	(0.58,1]	chr15	622254	4	SS5_PROX	SS5_PROX:INTRON	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6:ENST00000560303.1:ENST00000495420.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	50	2	3.20215	4.0458	4.88945	0.0388928	0.0136092	0.131324	0.0811697
chr7	1008449	1008549	3526307	0	-	0.61	(0.58,1]	chr7	340566	75	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	2.83384	4.045575	5.25731	0.0529065	0.00358178	0.14912	0.0342681
chr1	17664046	17664146	54851	0	+	0.57	(0.523,0.58]	chr1	5598	2	SS3_PROX	SS3_PROX:INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	58	2	2.46839	4.045485	5.62258	0.0683019	0.0193313	0.193274	0.0954446
chr7	67086422	67086521	3384894	0	+	0.393939	(0.39,0.419]	chr7	326589	25	INTRON	INTRON	TYW1	ENSG00000198874.14	ENST00000359626.10:ENST00000361660.8:ENST00000495971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	3.09555	4.045465	4.99538	0.0613573	0.0231436	0.158506	0.109883
chr1	61118328	61118428	146463	0	+	0.43	(0.419,0.45]	chr1	17144	61	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	95	2	2.0464	4.045405000000001	6.04441	0.0564353	0.0149622	0.171982	0.0835955
chr7	47393601	47393701	3587728	0	-	0.59	(0.58,1]	chr7	346036	236	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	2.97713	4.0453399999999995	5.11355	0.0271806	0.0226795	0.112113	0.108193
chr6	1681625	1681725	3079686	0	-	0.5	(0.485,0.523]	chr6	299464	13	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000533279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	55	2	3.30597	4.045115	4.78426	0.0660335	0.012958	0.162385	0.0778899
chr16	89434022	89434122	6661174	0	-	0.55	(0.523,0.58]	chr16	666753	23	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	143	2	3.68393	4.0448699999999995	4.40581	0.0162298	7.57639e-4	0.0873195	0.0117078
chr14	23513904	23513996	5757092	0	+	0.597826	(0.58,1]	chr14	564961	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ZFHX2-AS1	ENSG00000157306.14	ENST00000556354.5:ENST00000556613.1:ENST00000553985.1:ENST00000557568.1:ENST00000554403.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	51	2	2.78186	4.044665	5.30747	0.0342923	0.0196049	0.13449	0.0955413
chr2	239349080	239349180	1392201	0	-	0.7	(0.58,1]	chr2	148752	246	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	51	2	2.78186	4.044665	5.30747	0.0342923	0.0196049	0.13449	0.0955413
chr10	34685461	34685560	4670511	0	-	0.373737	(0.36,0.39]	chr10	445537	59	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.45756	4.04463	4.6317	0.0950937	0.0106804	0.189021	0.0700154
chr3	23842487	23842587	1431157	0	+	0.28	[0,0.29]	chr3	152792	306	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	61	2	2.5799	4.04459	5.50928	0.0797411	0.00267774	0.176933	0.0282006
chr14	89335855	89335955	6027461	0	-	0.28	[0,0.29]	chr14	591456	22	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	180	2	3.44515	4.04449	4.64383	0.00840514	3.32861e-4	0.0616658	0.00653221
chr22	42945484	42945584	7823584	0	-	0.52	(0.485,0.523]	chr22	820615	3	SS5_PROX	SS5_PROX:INTRON	PACSIN2	ENSG00000100266.19	ENST00000337959.8:ENST00000263246.8:ENST00000407585.5:ENST00000403744.7:ENST00000402229.5:ENST00000453643.5:ENST00000422336.5:ENST00000418133.5:ENST00000445706.5:ENST00000453079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	75	2	2.23742	4.04436	5.8513	0.0515447	0.0131886	0.165949	0.0785398
chr17	82007239	82007338	6815369	0	+	0.626263	(0.58,1]	chr17	688641	30	EXON_MRNA	EXON_MRNA:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5:ENST00000578236.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	284	2	3.58405	4.0443	4.50455	0.00215269	2.83569e-4	0.02913	0.00582203
chr2	235500344	235500444	1062599	0	+	0.57	(0.523,0.58]	chr2	115651	51	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	2.61478	4.0443	5.47382	0.052707	0.0244797	0.167062	0.106683
chr9	133855087	133855187	4428949	0	-	0.57	(0.523,0.58]	chr9	423304	204	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.61478	4.0443	5.47382	0.052707	0.0244797	0.167062	0.106683
chr13	98406798	98406898	5636334	0	+	0.51	(0.485,0.523]	chr13	553598	105	UTR3	UTR3:EXON_MRNA:INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000457029.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	90	2	2.24831	4.044225	5.84014	0.0826414	0.00139792	0.179476	0.0179863
chr1	1026245	1026344	977	0	+	0.646465	(0.58,1]	chr1	166	34	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.19823	4.04415	4.89007	0.0287301	0.00872525	0.115888	0.0612699
chr19	41377266	41377323	7263509	0	+	0.491228	(0.485,0.523]	chr19	745097	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	TMEM91	ENSG00000142046.15	ENST00000539627.5:ENST00000604123.5:ENST00000413014.6:ENST00000392002.7:ENST00000436170.6:ENST00000447302.6:ENST00000544232.5:ENST00000542945.5:ENST00000537354.5:ENST00000342187.9:ENST00000356385.8	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.7365	4.044085	5.35167	0.0423471	0.0294163	0.149195	0.116079
chr8	128033762	128033861	3920217	0	+	0.545455	(0.523,0.58]	chr8	374311	11	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1	lncRNA	lncRNA	lncRNA	lncRNA	1	54	2	3.18279	4.043895	4.905	0.0563605	0.0168396	0.154188	0.0919482
chr17	72898565	72898665	6967274	0	-	0.42	(0.419,0.45]	chr17	710518	484	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	58	2	3.15468	4.0437899999999996	4.9329	0.0716557	0.0211324	0.168159	0.103778
chr3	32552149	32552249	1731894	0	-	0.45	(0.419,0.45]	chr3	179160	58	INTRON	INTRON	DYNC1LI1	ENSG00000144635.9	ENST00000273130.9:ENST00000481915.5:ENST00000432458.6:ENST00000413350.5:ENST00000424991.1:ENST00000475193.1:ENST00000474077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	58	2	3.15468	4.0437899999999996	4.9329	0.0716557	0.0211324	0.168159	0.103778
chr4	2814510	2814610	2000251	0	+	0.51	(0.485,0.523]	chr4	203928	3	SS3_PROX	SS3_PROX:INTRON	SH3BP2	ENSG00000087266.17	ENST00000503219.5:ENST00000512131.5:ENST00000503393.8:ENST00000510074.5:ENST00000511237.5:ENST00000504294.5:ENST00000508385.5:ENST00000513020.5:ENST00000511663.5:ENST00000512014.5:ENST00000513095.5:ENST00000502260.5:ENST00000435136.8:ENST00000511185.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	3.5054	4.043200000000001	4.581	0.085711	0.00816275	0.181766	0.0589533
chr11	47272430	47272530	4855246	0	+	0.5	(0.485,0.523]	chr11	464653	1	SS5_PROX	SS5_PROX:INTRON	MADD	ENSG00000110514.19	ENST00000453571.5:ENST00000342922.8:ENST00000428807.5:ENST00000402799.5:ENST00000406482.5:ENST00000349238.7:ENST00000311027.9:ENST00000407859.7:ENST00000534808.1:ENST00000395344.7:ENST00000444117.5:ENST00000395336.7:ENST00000402192.6:ENST00000526603.5:ENST00000422579.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	3.12385	4.04312	4.96239	0.0518747	0.0193526	0.148503	0.0994526
chr16	89297175	89297274	6659777	0	-	0.454545	(0.45,0.485]	chr16	666648	50	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	76	2	2.92407	4.04278	5.16149	0.0427653	0.0124115	0.13762	0.0765738
chr9	137785187	137785286	4266164	0	+	0.585859	(0.58,1]	chr9	407449	9	INTRON	INTRON	EHMT1	ENSG00000181090.21	ENST00000371394.6:ENST00000460843.6:ENST00000636027.1:ENST00000637161.1:ENST00000637261.1:ENST00000462942.3:ENST00000637891.1:ENST00000637949.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	67	2	2.52834	4.042574999999999	5.55681	0.0249502	0.0126042	0.114418	0.0761905
chr2	72967136	72967236	1188463	0	-	0.36	(0.33,0.36]	chr2	128794	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SFXN5	ENSG00000144040.13	ENST00000272433.7:ENST00000461352.5:ENST00000474528.5:ENST00000495208.5:ENST00000482289.5:ENST00000490056.5:ENST00000411783.5:ENST00000410065.5:ENST00000482542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	2.83079	4.041855	5.25292	0.0384256	0.0376711	0.140049	0.131324
chr5	857570	857669	2607930	0	-	0.626263	(0.58,1]	chr5	259417	66	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	2	71	2	3.19406	4.041755	4.88945	0.0388928	0.00474968	0.131324	0.0413976
chr10	96638410	96638510	4740959	0	-	0.46	(0.45,0.485]	chr10	452496	53	INTRON	INTRON	PIK3AP1	ENSG00000155629.15	ENST00000339364.10:ENST00000371110.6:ENST00000468783.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	55	2	3.12941	4.041605000000001	4.9538	0.0569772	0.0199365	0.154343	0.100864
chr2	239370402	239370502	1392416	0	-	0.48	(0.45,0.485]	chr2	148759	171	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	55	2	3.12941	4.041605000000001	4.9538	0.0569772	0.0199365	0.154343	0.100864
chr6	2209356	2209456	3084977	0	-	0.55	(0.523,0.58]	chr6	299526	335	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5	protein_coding	protein_coding	protein_coding	protein_coding	3	87	2	2.42547	4.04148	5.65749	0.0227679	0.0182707	0.108532	0.0921579
chr10	1124630	1124719	4438331	0	+	0.505618	(0.485,0.523]	chr10	424820	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	WDR37	ENSG00000047056.17	ENST00000358220.5:ENST00000263150.9:ENST00000650072.1:ENST00000482165.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	57	2	2.53228	4.04141	5.55054	0.0614918	0.0215787	0.18013	0.100612
chr3	126460325	126460414	1907475	0	-	0.460674	(0.45,0.485]	chr3	193572	2	INTRON	INTRON	ZXDC	ENSG00000070476.15	ENST00000389709.8:ENST00000515545.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	2.87326	4.04116	5.20906	0.0399616	0.033576	0.133954	0.133139
chr1	228143028	228143128	358014	0	+	0.61	(0.58,1]	chr1	40401	8	INTRON	INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	68	2	2.37998	4.040945	5.70191	0.0345705	0.00964351	0.135397	0.0659937
chr16	87860304	87860404	6657077	0	-	0.39	(0.36,0.39]	chr16	666007	81	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	3	209	2	3.90237	4.040895	4.17942	0.00827071	0.00120397	0.0610772	0.0161684
chr3	197791740	197791840	1668695	0	+	0.55	(0.523,0.58]	chr3	175020	2	SS5_PROX	SS5_PROX:INTRON	LRCH3	ENSG00000186001.14	ENST00000443727.1:ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	66	2	2.77655	4.04085	5.30515	0.0685533	0.00509102	0.165066	0.0433513
chr11	68265049	68265147	5057270	0	-	0.622449	(0.58,1]	chr11	492361	8	INTRON	INTRON	C11orf24	ENSG00000171067.11	ENST00000304271.11:ENST00000533310.5:ENST00000530166.5:ENST00000527280.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	73	2	3.59052	4.04084	4.49116	0.0207449	0.014012	0.102713	0.0807513
chr11	47523524	47523617	5036109	0	-	0.451613	(0.45,0.485]	chr11	487592	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.30591	4.0408100000000005	4.77571	0.0719884	0.0135996	0.168159	0.0811697
chr2	101033043	101033143	1238903	0	-	0.43	(0.419,0.45]	chr2	133729	1	SS5_PROX	SS5_PROX:INTRON	TBC1D8	ENSG00000204634.13	ENST00000409318.2:ENST00000376840.8	protein_coding	protein_coding	protein_coding	protein_coding	7	492	2	3.92712	4.04069	4.15426	0.00468876	2.35176e-4	0.0447158	0.00508037
chr17	46520011	46520111	6744629	0	+	0.42	(0.419,0.45]	chr17	679298	4	SS3_PROX	SS3_PROX:INTRON	LRRC37A2	ENSG00000238083.8	ENST00000576629.5	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	3.39073	4.04053	4.69033	0.0958674	0.0128682	0.189038	0.0778066
chr2	11814090	11814190	722749	0	+	0.63	(0.58,1]	chr2	84465	86	INTRON	INTRON	LPIN1	ENSG00000134324.12	ENST00000449576.6:ENST00000425416.6:ENST00000396097.5:ENST00000396099.5:ENST00000256720.6:ENST00000674199.1:ENST00000404113.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	50	2	3.25332	4.040425	4.82753	0.0427798	0.0120565	0.13762	0.0754623
chr7	2440484	2440584	3308908	0	+	0.61	(0.58,1]	chr7	320715	67	UTR3	UTR3:EXON_MRNA:INTRON	CHST12	ENSG00000136213.10	ENST00000258711.7:ENST00000618655.2:ENST00000313156.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	80	2	2.37881	4.04036	5.70191	0.0219036	0.00964351	0.106977	0.0659937
chr13	112912117	112912217	5654737	0	+	0.46	(0.45,0.485]	chr13	555099	16	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000442625.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	67	2	2.69512	4.040325	5.38553	0.0794176	0.00490471	0.176565	0.0422077
chr10	75726148	75726248	4523425	0	+	0.47	(0.45,0.485]	chr10	432271	782	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	74	2	2.6953	4.040165	5.38503	0.0308908	0.0207866	0.119556	0.102713
chr5	1102908	1103007	2608880	0	-	0.606061	(0.58,1]	chr5	259667	83	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	2.15496	4.04012	5.92528	0.0548868	0.0062948	0.168717	0.0523832
chr16	89293294	89293393	6659738	0	-	0.565657	(0.523,0.58]	chr16	666648	11	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	145	2	3.40026	4.04002	4.67978	0.0262178	3.43179e-4	0.110264	0.0067057
chr2	177414870	177414970	962819	0	+	0.32	(0.29,0.33]	chr2	105590	188	INTRON	INTRON	AGPS	ENSG00000018510.18	ENST00000679459.1:ENST00000637633.2:ENST00000680770.1:ENST00000680705.1:ENST00000681752.1:ENST00000460342.2:ENST00000681565.1:ENST00000680893.1:ENST00000681032.1:ENST00000679421.1:ENST00000680910.1:ENST00000680677.1:ENST00000409888.1:ENST00000642466.2:ENST00000264167.11:ENST00000680155.1:ENST00000679478.1:ENST00000681449.1:ENST00000681891.1:ENST00000681028.1:ENST00000679639.1:ENST00000680028.1:ENST00000679994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	3.28897	4.03998	4.79099	0.061706	0.0137233	0.158854	0.0814223
chr2	65420866	65420965	1172064	0	-	0.393939	(0.39,0.419]	chr2	127582	403	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	2.7933500000000002	4.03989	5.28643	0.0415789	0.041475	0.148959	0.136301
chr13	98221806	98221906	5634448	0	+	0.4	(0.39,0.419]	chr13	553474	80	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000376581.9:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	2.86613	4.039785	5.21344	0.0665161	0.00893514	0.162469	0.0620271
chr12	132529284	132529383	5352908	0	+	0.69697	(0.58,1]	chr12	523670	9	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	2	70	2	2.21459	4.03975	5.86491	0.0487458	0.00707578	0.160725	0.0558168
chr13	113328883	113328983	5753219	0	-	0.48	(0.45,0.485]	chr13	564094	24	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.69444	4.039735	5.38503	0.0471378	0.0308908	0.156915	0.119556
chr1	44244265	44244364	459615	0	-	0.585859	(0.58,1]	chr1	55307	18	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	50	2	2.91493	4.0397300000000005	5.16453	0.0259506	0.0249802	0.116361	0.10758
chr16	89314967	89315065	6659963	0	-	0.591837	(0.58,1]	chr16	666672	10	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	60	2	2.40217	4.039295	5.67642	0.100879	0.00117039	0.196131	0.0157899
chr16	21977146	21977246	6420025	0	+	0.45	(0.419,0.45]	chr16	634956	3	INTRON	INTRON	UQCRC2	ENSG00000140740.11	ENST00000268379.9:ENST00000561553.5:ENST00000563898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	60	2	2.52086	4.039125	5.55739	0.0683849	0.0310506	0.193274	0.119758
chr7	29195490	29195587	3334297	0	+	0.494845	(0.485,0.523]	chr7	322839	1	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5:ENST00000222792.11:ENST00000409350.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	237	2	3.08341	4.039035	4.99466	0.0154479	1.38525e-4	0.0849828	0.00347765
chr2	63985416	63985516	1166692	0	-	0.29	[0,0.29]	chr2	127344	10	INTRON	INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.73208	4.03878	5.34548	0.0409813	0.0197148	0.147516	0.0958249
chr17	82006640	82006739	6815363	0	+	0.69697	(0.58,1]	chr17	688641	24	EXON_MRNA	EXON_MRNA:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5:ENST00000578236.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	32	1436	2	4.01977	4.03876	4.05775	6.19729e-4	1.79103e-5	0.0146109	7.78864e-4
chr18	13444948	13445045	7025025	0	+	0.453608	(0.45,0.485]	chr18	717583	7	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000610087.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	68	2	2.84011	4.03873	5.23735	0.0648672	0.00687715	0.162218	0.0526888
chr14	30922404	30922504	5950952	0	-	0.36	(0.33,0.36]	chr14	583071	29	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000366206.2:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	91	2	2.46513	4.03862	5.61211	0.0228631	0.022456	0.108967	0.102751
chr21	44865733	44865814	7678498	0	-	0.506173	(0.485,0.523]	chr21	802771	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000474737.5:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	347	2	3.29336	4.03842	4.78348	0.00474748	8.42615e-4	0.0413976	0.0172486
chr7	47517939	47518039	3588992	0	-	0.29	[0,0.29]	chr7	346138	106	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.91875	4.038325	5.1579	0.0282338	0.0269673	0.122308	0.112113
chr8	127949935	127950035	3919359	0	+	0.64	(0.58,1]	chr8	374241	66	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1	lncRNA	lncRNA	lncRNA	lncRNA	1	52	2	3.52722	4.038245	4.54927	0.0643046	0.00611467	0.161669	0.0489549
chr5	139657756	139657856	2549738	0	+	0.59	(0.58,1]	chr5	253168	62	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	2.9908	4.03807	5.08534	0.0409591	0.00549379	0.136191	0.0454065
chr8	143595587	143595687	4097208	0	-	0.64	(0.58,1]	chr8	389363	1	SS5_PROX	SS5_PROX:INTRON	EEF1D	ENSG00000104529.19	ENST00000317198.10:ENST00000532400.1:ENST00000529272.5:ENST00000395119.7:ENST00000533833.5:ENST00000528610.5:ENST00000442189.6:ENST00000618139.4:ENST00000526838.5:ENST00000531621.5:ENST00000529007.5:ENST00000524624.5:ENST00000530191.6:ENST00000534377.6:ENST00000529516.6:ENST00000419152.7:ENST00000531218.6:ENST00000533494.6:ENST00000534380.6:ENST00000524397.5:ENST00000526786.5:ENST00000530848.5:ENST00000534232.5:ENST00000533749.5:ENST00000525695.5:ENST00000526340.5:ENST00000532543.1:ENST00000531931.1:ENST00000423316.7:ENST00000526710.1:ENST00000531281.1:ENST00000532596.5:ENST00000531670.5:ENST00000529832.5:ENST00000530306.5:ENST00000530545.5:ENST00000525261.5:ENST00000534804.5:ENST00000524900.1:ENST00000531953.5:ENST00000526133.1:ENST00000534475.5:ENST00000528303.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	83	2	2.81461	4.0379950000000004	5.26138	0.021217	0.00731787	0.0996078	0.0550721
chr19	16131616	16131711	7216455	0	+	0.505263	(0.485,0.523]	chr19	737377	17	INTRON	INTRON	RAB8A	ENSG00000167461.12	ENST00000300935.8:ENST00000586682.1:ENST00000592971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	158	2	3.74509	4.037765	4.33044	0.00499421	0.0045454	0.0463896	0.0401487
chr19	44946475	44946575	7269156	0	+	0.47	(0.45,0.485]	chr19	746443	4	SS5_PROX	SS5_PROX:INTRON	APOC4-APOC2:APOC2	ENSG00000224916.9:ENSG00000234906.11	ENST00000585685.5:ENST00000589057.5:ENST00000592257.5:ENST00000252490.7:ENST00000591597.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	70	2	3.00299	4.037595	5.0722	0.0512051	0.00988295	0.148503	0.0664239
chr1	17668990	17669090	54901	0	+	0.62	(0.58,1]	chr1	5603	40	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	67	2	2.48056	4.037515	5.59447	0.0277636	0.0117666	0.12074	0.0737098
chr20	34472610	34472709	7461894	0	+	0.40404	(0.39,0.419]	chr20	776789	7	INTRON	INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000262650.10:ENST00000665346.1:ENST00000483727.5:ENST00000461661.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	92	2	2.30732	4.037445	5.76757	0.0330748	0.0204917	0.13294	0.0979776
chr17	78839742	78839841	6979881	0	-	0.555556	(0.523,0.58]	chr17	712767	6	INTRON	INTRON	USP36	ENSG00000055483.20	ENST00000589225.5:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10:ENST00000588086.6:ENST00000589424.5:ENST00000590546.6:ENST00000586531.5:ENST00000591942.6:ENST00000592907.5:ENST00000592275.5:ENST00000587783.5:ENST00000588365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	54	2	3.229	4.037345	4.84569	0.0610722	0.0152072	0.158506	0.0861813
chr2	174119984	174120084	1319650	0	-	0.2	[0,0.29]	chr2	141001	376	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000392560.6:ENST00000462000.1:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	61	2	2.4797	4.03729	5.59488	0.0920821	0.00215262	0.188571	0.0241612
chr16	81497293	81497393	6508266	0	+	0.46	(0.45,0.485]	chr16	645911	14	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	75	2	3.25658	4.03715	4.81772	0.0347918	0.0167663	0.126561	0.0917029
chr14	88037634	88037729	5893712	0	+	0.515789	(0.485,0.523]	chr14	575607	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	LINC01146	ENSG00000258867.7	ENST00000655699.1:ENST00000660520.1:ENST00000667558.2:ENST00000653288.1:ENST00000658103.1:ENST00000671337.1:ENST00000556684.6:ENST00000656156.1:ENST00000659391.1:ENST00000667759.1:ENST00000671685.1:ENST00000659115.1:ENST00000658529.1:ENST00000671064.1:ENST00000664613.2:ENST00000653115.1:ENST00000663527.1:ENST00000555996.6:ENST00000693558.1:ENST00000658802.1:ENST00000664905.1:ENST00000686285.1:ENST00000556033.6:ENST00000690670.1:ENST00000692293.1:ENST00000654646.1:ENST00000690017.1:ENST00000665065.1:ENST00000670670.1:ENST00000665901.1:ENST00000656018.1:ENST00000671198.1:ENST00000553929.5:ENST00000658614.1:ENST00000664272.1:ENST00000662785.1:ENST00000661820.1:ENST00000669790.1:ENST00000664916.2:ENST00000670811.1:ENST00000660394.1:ENST00000691198.1:ENST00000670645.1:ENST00000669517.1:ENST00000657214.1:ENST00000670474.1:ENST00000669313.1:ENST00000654427.1:ENST00000668342.1:ENST00000662577.1:ENST00000653202.1:ENST00000669569.1:ENST00000659555.1:ENST00000664331.1:ENST00000688445.1:ENST00000656485.1:ENST00000670285.1:ENST00000668853.1:ENST00000686044.1:ENST00000691127.1:ENST00000660504.1:ENST00000660271.1:ENST00000658873.1:ENST00000660665.1:ENST00000660744.1:ENST00000671585.1:ENST00000667100.1:ENST00000690956.1:ENST00000556673.2:ENST00000653337.1:ENST00000557339.5:ENST00000654359.1:ENST00000666809.1:ENST00000661299.1:ENST00000671063.1:ENST00000664976.1:ENST00000655185.1:ENST00000659330.1:ENST00000656043.1:ENST00000662720.1:ENST00000666156.1:ENST00000662304.1:ENST00000658804.1:ENST00000655110.1:ENST00000653532.1:ENST00000654831.1:ENST00000557355.1:ENST00000663488.1:ENST00000656466.1	lncRNA	lncRNA	lncRNA	lncRNA	2	73	2	2.81013	4.0369399999999995	5.26375	0.0335928	0.0154038	0.124319	0.0869771
chr16	18374607	18374707	6557704	0	-	0.66	(0.58,1]	chr16	653448	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NPIPA9:PKD1P5	ENSG00000233024.7:ENSG00000254681.6	ENST00000545114.5:ENST00000427999.6:ENST00000546267.5:ENST00000533010.6:ENST00000532415.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:retained_intron:processed_transcript:transcribed_unprocessed_pseudogene	3	83	2	2.00788	4.036935	6.06599	0.0498302	0.00477081	0.161202	0.0450109
chr16	85401431	85401531	6517085	0	+	0.66	(0.58,1]	chr16	646391	421	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.63525	4.036385	5.43752	0.0459151	0.0156166	0.154743	0.0849828
chr1	12594092	12594192	402544	0	-	0.53	(0.523,0.58]	chr1	46222	131	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	68	2	2.98385	4.036335	5.08882	0.0505794	0.00834774	0.148456	0.0598672
chr12	772263	772362	5148822	0	+	0.30303	(0.29,0.33]	chr12	500570	176	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	2.77627	4.036265	5.29626	0.0665945	0.005619	0.162562	0.0462026
chr17	36576656	36576750	6725345	0	+	0.319149	(0.29,0.33]	chr17	675821	1	EXON_MRNA	EXON_MRNA:INTRON	GGNBP2	ENSG00000278311.5	ENST00000613102.5:ENST00000617860.4:ENST00000618837.4:ENST00000619573.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	65	2	2.77627	4.036265	5.29626	0.0665945	0.005619	0.162562	0.0462026
chr14	91223081	91223178	5899588	0	+	0.463918	(0.45,0.485]	chr14	576435	25	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	74	2	2.42327	4.036245	5.64922	0.0367983	0.020599	0.139793	0.0982852
chr6	31734463	31734563	3119430	0	-	0.57	(0.523,0.58]	chr6	303331	2	SS3_PROX	SS3_PROX:INTRON	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000616760.1:ENST00000375784.8	protein_coding	protein_coding	protein_coding	protein_coding	3	191	2	3.87652	4.03604	4.19556	0.00646345	9.51496e-4	0.0531182	0.0136675
chr2	134450340	134450439	898751	0	+	0.565657	(0.523,0.58]	chr2	101298	16	UTR3	UTR3:EXON_MRNA	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	2.9514	4.03595	5.1205	0.0416463	0.0109262	0.136301	0.0706366
chr11	78397966	78398066	5089855	0	-	0.48	(0.45,0.485]	chr11	495266	335	INTRON	INTRON	GAB2	ENSG00000033327.13	ENST00000361507.5:ENST00000526030.1:ENST00000528886.5:ENST00000530915.1:ENST00000534823.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	72	2	3.12123	4.035895	4.95056	0.0428769	0.0127826	0.137868	0.0773423
chr10	79175715	79175815	4533114	0	+	0.67	(0.58,1]	chr10	432438	132	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	84	2	2.61273	4.035724999999999	5.45872	0.0388117	0.00211999	0.131324	0.0239744
chr14	70024646	70024746	5872629	0	+	0.43	(0.419,0.45]	chr14	573363	8	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.7072600000000002	4.035605	5.36395	0.0496323	0.0407485	0.160725	0.135868
chr2	200328730	200328830	986177	0	+	0.47	(0.45,0.485]	chr2	108285	193	INTRON	INTRON	SPATS2L	ENSG00000196141.14	ENST00000439084.5:ENST00000409718.5:ENST00000358677.9:ENST00000409988.7:ENST00000409385.5:ENST00000439395.5:ENST00000444012.5:ENST00000451764.6:ENST00000360760.9:ENST00000423749.5:ENST00000457757.5:ENST00000471601.5:ENST00000428692.5:ENST00000453663.5:ENST00000409140.8:ENST00000459656.5:ENST00000471533.5:ENST00000409397.6:ENST00000619961.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	55	2	2.81608	4.03559	5.2551	0.0375071	0.0373953	0.139823	0.130656
chr6	88801832	88801932	3200357	0	-	0.36	(0.33,0.36]	chr6	310412	2	SS3_PROX	SS3_PROX:INTRON	RNGTT	ENSG00000111880.16	ENST00000369485.9:ENST00000369475.7:ENST00000627296.1:ENST00000538899.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	56	2	2.77362	4.0355799999999995	5.29754	0.041944	0.0360263	0.149108	0.127853
chr20	345505	345605	7511898	0	-	0.53	(0.523,0.58]	chr20	783986	204	INTRON	INTRON	NRSN2-AS1	ENSG00000225377.6	ENST00000442637.2:ENST00000662580.1	lncRNA	lncRNA	lncRNA	lncRNA	1	65	2	2.57767	4.035445	5.49322	0.090356	0.00324246	0.186369	0.0319521
chr1	40422949	40423043	100733	0	+	0.308511	(0.29,0.33]	chr1	11989	10	UTR3	UTR3:EXON_MRNA	SMAP2	ENSG00000084070.12	ENST00000372718.8:ENST00000372708.5:ENST00000614549.4:ENST00000539317.2	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.4119	4.03529	4.65868	0.0735584	0.0103834	0.17026	0.0682598
chr11	65429663	65429762	4871638	0	+	0.30303	(0.29,0.33]	chr11	468177	70	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	49	2956	2	3.82494	4.035135	4.24533	0.00113188	2.27599e-5	0.0203069	9.24411e-4
chr16	50598098	50598198	6451908	0	+	0.6	(0.58,1]	chr16	639902	395	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	343	2	3.70381	4.0351	4.36639	0.00108056	2.43795e-4	0.0198009	0.00522003
chr2	235507038	235507138	1062666	0	+	0.54	(0.523,0.58]	chr2	115651	118	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	91	2	2.40998	4.034784999999999	5.65959	0.0653274	0.0021416	0.162385	0.0240825
chr1	43564106	43564206	107080	0	+	0.58	(0.523,0.58]	chr1	13192	98	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	199	2	3.54755	4.03463	4.52171	0.00961312	5.43906e-4	0.0659937	0.00927567
chrX	48918435	48918535	8040676	0	-	0.66	(0.58,1]	chrX	838766	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PIM2	ENSG00000102096.9	ENST00000376509.4	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.48889	4.03457	4.58025	0.0172566	0.016972	0.0923809	0.0889149
chr9	133853691	133853791	4428935	0	-	0.61	(0.58,1]	chr9	423304	190	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	2	127	2	3.99446	4.0343800000000005	4.0743	0.0063152	0.00136577	0.0524685	0.0176851
chr8	143487446	143487546	4096467	0	-	0.62	(0.58,1]	chr8	389272	21	INTRON	INTRON	ZC3H3	ENSG00000014164.7	ENST00000262577.6:ENST00000528401.1	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.6577	4.03432	5.41094	0.0695799	0.00240622	0.167028	0.0261006
chr10	79223572	79223672	4533597	0	+	0.54	(0.523,0.58]	chr10	432457	69	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	2.6197	4.034075	5.44845	0.0853454	0.00361636	0.181766	0.0342681
chr12	26529351	26529451	5398517	0	-	0.53	(0.523,0.58]	chr12	528527	337	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	1	65	2	2.6197	4.034075	5.44845	0.0853454	0.00361636	0.181766	0.0342681
chr16	78954418	78954518	6503963	0	+	0.32	(0.29,0.33]	chr16	645717	1741	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	126	2	2.70943	4.03395	5.35847	0.0269557	0.00701368	0.112113	0.0536717
chr16	89301504	89301595	6659823	0	-	0.67033	(0.58,1]	chr16	666654	3	UTR3	UTR3:EXON_MRNA:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	82	2	2.75985	4.03366	5.30747	0.0196049	0.00845983	0.0955413	0.06064
chr16	81667082	81667179	6509977	0	+	0.556701	(0.523,0.58]	chr16	645960	28	UTR3	UTR3:EXON_MRNA:INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8:ENST00000566462.2	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	2.81323	4.0336300000000005	5.25403	0.0650388	0.00573579	0.162385	0.0467736
chr1	213990779	213990879	339383	0	+	0.31	(0.29,0.33]	chr1	38089	6	INTRON	INTRON	PROX1	ENSG00000117707.16	ENST00000471129.1:ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2:ENST00000607425.1	protein_coding	protein_coding	protein_coding	protein_coding	3	196	2	3.74105	4.033315	4.32558	0.0138617	2.75731e-4	0.0804838	0.00572834
chr6	129524856	129524953	3258042	0	-	0.278351	[0,0.29]	chr6	315282	4	INTRON	INTRON	ENSG00000226149	ENSG00000226149.6	ENST00000665046.1:ENST00000664071.1:ENST00000657779.1:ENST00000659721.1:ENST00000668058.1:ENST00000670413.1	lncRNA	lncRNA	lncRNA	lncRNA	1	52	2	2.85917	4.03315	5.20713	0.0318818	0.0248721	0.129299	0.10758
chr20	36856581	36856681	7557067	0	-	0.61	(0.58,1]	chr20	789155	168	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	5	270	2	4.02442	4.033025	4.04163	0.0023228	1.81117e-4	0.030354	0.00421416
chr17	57350322	57350422	6760708	0	+	0.45	(0.419,0.45]	chr17	682104	396	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	93	2	2.27509	4.032985	5.79088	0.0362019	0.022052	0.139793	0.101502
chr17	4840532	4840632	6671958	0	+	0.47	(0.45,0.485]	chr17	668609	65	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	2.5616	4.03291	5.50422	0.0598406	0.0257993	0.177269	0.109555
chr2	165939738	165939836	1301081	0	-	0.428571	(0.419,0.45]	chr2	139566	22	INTRON	INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000679840.1:ENST00000680448.1:ENST00000681606.1:ENST00000679671.1:ENST00000464374.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	94	2	2.47244	4.032795	5.59315	0.029494	0.0240615	0.116079	0.112363
chr1	85462544	85462644	519987	0	-	0.36	(0.33,0.36]	chr1	61355	274	INTRON	INTRON	DDAH1	ENSG00000153904.21	ENST00000426972.8:ENST00000284031.13	protein_coding	protein_coding	protein_coding	protein_coding	2	151	2	3.88179	4.032635	4.18348	0.0125838	0.00172571	0.0761905	0.0208328
chr16	46901190	46901290	6442595	0	+	0.56	(0.523,0.58]	chr16	639006	4	SS5_PROX	SS5_PROX:INTRON	GPT2	ENSG00000166123.14	ENST00000340124.9:ENST00000562132.5:ENST00000440783.2	protein_coding	protein_coding	protein_coding	protein_coding	2	142	2	3.74217	4.0326	4.32303	0.0146653	9.56741e-4	0.0826843	0.013724
chr6	31652475	31652552	3119049	0	-	0.597403	(0.58,1]	chr6	303158	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BAG6	ENSG00000204463.14	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.2:ENST00000362049.10:ENST00000439687.6:ENST00000437771.5:ENST00000451898.5:ENST00000424480.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	91	2	2.2002	4.032555	5.86491	0.0247319	0.00707578	0.114418	0.0558168
chr20	34919503	34919572	7463193	0	+	0.594203	(0.58,1]	chr20	776977	2	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ACSS2	ENSG00000131069.20	ENST00000481284.5:ENST00000475459.6:ENST00000477932.5:ENST00000480978.5:ENST00000360596.7:ENST00000253382.5:ENST00000476922.5:ENST00000468550.6:ENST00000493250.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	83	2	3.87867	4.031925	4.18518	0.0374658	0.00797934	0.139793	0.0596361
chr3	13203425	13203525	1691176	0	-	0.61	(0.58,1]	chr3	176566	389	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.84993	4.03185	5.21377	0.0297842	0.0230012	0.126591	0.102982
chr11	65444841	65444940	4871790	0	+	0.626263	(0.58,1]	chr11	468177	222	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	110	5903	2	3.8715	4.0318249999999995	4.19215	2.1975e-4	2.26766e-5	0.00837909	9.21511e-4
chr9	114203901	114204001	4226191	0	+	0.45	(0.419,0.45]	chr9	400776	75	INTRON	INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8:ENST00000451716.5:ENST00000494090.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	165	2	3.26132	4.031815	4.80231	0.0394801	3.87629e-4	0.13291	0.00730116
chr3	105847237	105847337	1862758	0	-	0.36	(0.33,0.36]	chr3	189853	74	INTRON	INTRON	CBLB	ENSG00000114423.23	ENST00000645759.1:ENST00000394030.8:ENST00000646499.1:ENST00000645425.1:ENST00000646825.1:ENST00000643322.1:ENST00000403724.5:ENST00000405772.5:ENST00000447441.6:ENST00000643403.1:ENST00000438603.6:ENST00000443752.2:ENST00000643192.1:ENST00000642907.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	67	2	2.64458	4.03169	5.4188	0.0857771	0.00513015	0.181766	0.0435186
chr1	111162392	111162492	205750	0	+	0.49	(0.485,0.523]	chr1	22780	7	INTRON	INTRON	CEPT1	ENSG00000134255.15	ENST00000545121.5:ENST00000498239.5:ENST00000357172.9:ENST00000460443.5:ENST00000478042.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	67	2	2.92022	4.03135	5.14248	0.0555127	0.00761903	0.154188	0.0561937
chr7	47376815	47376915	3587560	0	-	0.42	(0.419,0.45]	chr7	346036	68	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	80	2	2.92212	4.03131	5.1405	0.0550015	0.0141969	0.153337	0.0833845
chr14	23521900	23522000	5757173	0	+	0.5	(0.485,0.523]	chr14	564963	71	INTRON	INTRON	ZFHX2-AS1	ENSG00000157306.14	ENST00000556354.5:ENST00000553985.1:ENST00000554403.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	72	2	2.51105	4.0307949999999995	5.55054	0.029737800000000002	0.0215787	0.126591	0.100612
chr17	37212877	37212976	6891320	0	-	0.333333	(0.33,0.36]	chr17	699747	20	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000614450.4:ENST00000612120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	92	2	2.59821	4.0307949999999995	5.46338	0.0281891	0.017008	0.114124	0.0923809
chr7	47471811	47471911	3588526	0	-	0.4	(0.39,0.419]	chr7	346123	187	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	2.29339	4.03048	5.76757	0.0501037	0.0204917	0.161731	0.0979776
chr1	112706252	112706352	563033	0	-	0.52	(0.485,0.523]	chr1	64622	1	SS3_ADJ	SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	RHOC	ENSG00000155366.17	ENST00000369633.6:ENST00000369642.7:ENST00000339083.12:ENST00000285735.6:ENST00000468093.5:ENST00000369638.6:ENST00000369637.5:ENST00000369636.6:ENST00000484280.6:ENST00000369632.6:ENST00000425265.6:ENST00000436685.6:ENST00000528831.5:ENST00000484054.3:ENST00000478447.1:ENST00000527563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	370	2	2.55652	4.030455	5.50439	0.00751515	4.80757e-4	0.0557877	0.0126988
chr13	19991062	19991162	5543120	0	+	0.45	(0.419,0.45]	chr13	547198	206	INTRON	INTRON	ZMYM2	ENSG00000121741.17	ENST00000382881.7:ENST00000382874.6:ENST00000610343.5:ENST00000382871.3:ENST00000620447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	71	2	2.75532	4.0304	5.30548	0.0800906	0.00792071	0.177372	0.057762
chr12	89348099	89348195	5468466	0	-	0.3125	(0.29,0.33]	chr12	537628	10	UTR3	UTR3:EXON_MRNA	DUSP6	ENSG00000139318.8	ENST00000279488.8	protein_coding	protein_coding	protein_coding	protein_coding	3	88	2	2.54065	4.030185	5.51972	0.0208628	0.0180231	0.0991037	0.0952934
chr3	93971585	93971683	1853158	0	-	0.377551	(0.36,0.39]	chr3	189053	25	INTRON	INTRON	PROS1	ENSG00000184500.16	ENST00000394236.9:ENST00000648853.1:ENST00000650591.1:ENST00000348974.5:ENST00000647936.1:ENST00000407433.6:ENST00000649103.1:ENST00000472684.2:ENST00000648721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	155	2	3.82738	4.0301849999999995	4.23299	0.015089	0.00163814	0.0841543	0.0201803
chr20	18685443	18685543	7444287	0	+	0.64	(0.58,1]	chr20	774758	529	INTRON	INTRON	ENSG00000284776:DTD1	ENSG00000284776.1:ENSG00000125821.13	ENST00000618693.4:ENST00000647441.1:ENST00000377452.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	80	2	2.58187	4.03013	5.47839	0.0145198	0.0133635	0.0823104	0.0801608
chr7	47355020	47355119	3587341	0	-	0.535354	(0.523,0.58]	chr7	346030	83	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	2.43762	4.0301	5.62258	0.0343548	0.0193313	0.134666	0.0954446
chr2	3293504	3293604	1081042	0	-	0.59	(0.58,1]	chr2	117633	108	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	59	2	2.50987	4.029825	5.54978	0.0865901	0.00165911	0.182221	0.0202545
chr10	79175815	79175915	4533115	0	+	0.63	(0.58,1]	chr10	432438	133	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.91446	4.0297149999999995	5.14497	0.0464528	0.00474658	0.143232	0.0413976
chr22	38755271	38755356	7812446	0	-	0.505882	(0.485,0.523]	chr22	819245	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	SUN2	ENSG00000100242.16	ENST00000405510.5:ENST00000689035.1:ENST00000405018.5:ENST00000406622.5:ENST00000438058.5:ENST00000433561.5:ENST00000439339.1	protein_coding	protein_coding	protein_coding	protein_coding	2	89	2	2.21906	4.0296	5.84014	0.0861655	0.00139792	0.181978	0.0179863
chr13	32179443	32179533	5562446	0	+	0.344444	(0.33,0.36]	chr13	548668	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FRY	ENSG00000073910.23	ENST00000645780.1:ENST00000647500.1:ENST00000642040.1:ENST00000542859.6	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.51922	4.029439999999999	5.53966	0.0659899	0.0251076	0.189025	0.107672
chr7	241404	241503	3306069	0	+	0.606061	(0.58,1]	chr7	320161	321	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	2.66286	4.02916	5.39546	0.0183006	0.0168207	0.0958973	0.0884836
chr9	129500723	129500820	4250784	0	+	0.57732000000000006	(0.523,0.58]	chr9	404726	19	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	73	2	2.88829	4.02899	5.16969	0.0387762	0.0126903	0.131324	0.0772455
chr3	48935798	48935898	1465096	0	+	0.46	(0.45,0.485]	chr3	156612	76	INTRON	INTRON	ARIH2	ENSG00000177479.20	ENST00000478224.5:ENST00000430423.5:ENST00000452882.5:ENST00000498314.5:ENST00000474618.5:ENST00000449376.5:ENST00000490095.5:ENST00000356401.9:ENST00000495761.5:ENST00000483333.5:ENST00000482427.5:ENST00000488963.5:ENST00000420814.5:ENST00000486316.5:ENST00000474936.6:ENST00000484999.5:ENST00000470296.5:ENST00000463204.5:ENST00000452385.5:ENST00000495507.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	55	2	3.22036	4.028955	4.83755	0.06646	0.016408	0.162385	0.0911382
chrX	24199936	24200036	7854827	0	+	0.48	(0.45,0.485]	chrX	823856	198	INTRON	INTRON	ZFX	ENSG00000005889.16	ENST00000539115.5:ENST00000379188.7:ENST00000304543.10:ENST00000379177.5:ENST00000459724.1:ENST00000338565.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	67	2	2.76944	4.02895	5.28846	0.0716626	0.00612862	0.168159	0.0489549
chr22	15819263	15819361	7682917	0	+	0.55102	(0.523,0.58]	chr22	803568	2	INTRON	INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000447898.5	lncRNA	lncRNA	lncRNA	lncRNA	6	376	2	3.551	4.02883	4.50666	0.00650119	6.99708e-5	0.0532642	0.00210446
chr1	62266134	62266231	497488	0	-	0.556701	(0.523,0.58]	chr1	59359	25	INTRON	INTRON	KANK4	ENSG00000132854.19	ENST00000371153.9:ENST00000354381.3:ENST00000371150.5	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.27377	4.028805	4.78384	0.0663135	0.0137592	0.162385	0.0814923
chr15	67102622	67102722	6139444	0	+	0.48	(0.45,0.485]	chr15	603944	32	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1:ENST00000559092.1:ENST00000560175.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	198	2	3.78564	4.0286100000000005	4.27158	0.00614157	0.00138394	0.0517628	0.0178817
chr3	66500089	66500189	1817115	0	-	0.7	(0.58,1]	chr3	187449	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LRIG1	ENSG00000144749.14	ENST00000273261.8:ENST00000383703.3:ENST00000498287.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	72	2	3.56577	4.028465	4.49116	0.0207449	0.0146864	0.102713	0.0826843
chr7	75713068	75713168	3608234	0	-	0.57	(0.523,0.58]	chr7	348444	580	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6:ENST00000485723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	78	2	3.4477	4.02819	4.60868	0.0242383	0.0226775	0.108193	0.106588
chr19	40090457	40090553	7379235	0	-	0.541667	(0.523,0.58]	chr19	765590	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF780A	ENSG00000197782.15	ENST00000450241.6:ENST00000414720.6:ENST00000455521.5:ENST00000340963.9:ENST00000683561.1:ENST00000595687.6:ENST00000595773.5:ENST00000601688.5:ENST00000599972.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	2	73	2	2.29891	4.0281649999999996	5.75742	0.0454288	0.0155135	0.154539	0.0849828
chr6	158017895	158017995	3059671	0	+	0.58	(0.523,0.58]	chr6	297372	1	SS5_PROX	SS5_PROX:INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.54344	4.027955	5.51247	0.0599121	0.0230387	0.177269	0.102982
chr1	52914495	52914595	485576	0	-	0.63	(0.58,1]	chr1	57725	4	SS3_PROX	SS3_PROX:INTRON	ECHDC2	ENSG00000121310.17	ENST00000536120.5:ENST00000371522.9:ENST00000460612.5:ENST00000371520.5:ENST00000358358.9:ENST00000476477.6:ENST00000467988.2:ENST00000488268.5:ENST00000544365.5:ENST00000495920.5:ENST00000544531.5:ENST00000480312.6:ENST00000542552.1:ENST00000474789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	63	2	3.16566	4.027865	4.89007	0.0304114	0.00872525	0.11845	0.0612699
chr1	93753871	93753966	536020	0	-	0.547368	(0.523,0.58]	chr1	62528	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	BCAR3	ENSG00000137936.18	ENST00000370244.5:ENST00000469315.1:ENST00000433544.1:ENST00000649852.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.74768	4.027815	5.30795	0.0411359	0.0315825	0.147756	0.120781
chr1	223977415	223977515	670199	0	-	0.53	(0.523,0.58]	chr1	78696	3	SS3_PROX	SS3_PROX:INTRON	GTF2IP20	ENSG00000272645.4	ENST00000634905.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	54	2	2.74768	4.027815	5.30795	0.0411359	0.0315825	0.147756	0.120781
chr10	96134582	96134669	4560132	0	+	0.37931	(0.36,0.39]	chr10	435106	6	INTRON	INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	107	2	2.38422	4.02775	5.67128	0.023302	0.0215419	0.105564	0.103669
chr7	138509703	138509803	3502498	0	+	0.18	[0,0.29]	chr7	337502	49	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	3.3667	4.0276250000000005	4.68855	0.0554735	0.0105013	0.154188	0.0689526
chr3	129454631	129454725	1566436	0	+	0.553191	(0.523,0.58]	chr3	165748	12	INTRON	INTRON	IFT122	ENSG00000163913.14	ENST00000693654.1:ENST00000687461.1:ENST00000440957.7:ENST00000688129.1:ENST00000689313.1:ENST00000689801.1:ENST00000691583.1:ENST00000347300.6:ENST00000685282.1:ENST00000692242.1:ENST00000687377.1:ENST00000693489.1:ENST00000687645.1:ENST00000689643.1:ENST00000688970.1:ENST00000512157.6:ENST00000692228.1:ENST00000693114.1:ENST00000690862.1:ENST00000689332.1:ENST00000685921.1:ENST00000691770.1:ENST00000692985.1:ENST00000685447.1:ENST00000693162.1:ENST00000692391.1:ENST00000686531.1:ENST00000693129.1:ENST00000689796.1:ENST00000685939.1:ENST00000686830.1:ENST00000687791.1:ENST00000686473.1:ENST00000690723.1:ENST00000689871.1:ENST00000688504.1:ENST00000691964.1:ENST00000686375.1:ENST00000691733.1:ENST00000691705.1:ENST00000690209.1:ENST00000687864.1:ENST00000689819.1:ENST00000296266.7:ENST00000689492.1:ENST00000687398.1:ENST00000690663.1:ENST00000693588.1:ENST00000690677.1:ENST00000688664.1:ENST00000431818.8:ENST00000507564.5:ENST00000693233.1:ENST00000504021.6:ENST00000348417.7:ENST00000692901.1:ENST00000515783.6:ENST00000688020.1:ENST00000512220.5:ENST00000349441.6:ENST00000689005.1:ENST00000691641.1:ENST00000692321.1:ENST00000685087.1:ENST00000692728.1:ENST00000691360.1:ENST00000685189.1:ENST00000687766.1:ENST00000687845.1:ENST00000692508.1:ENST00000506507.5:ENST00000509815.1:ENST00000509195.5:ENST00000502304.5:ENST00000502456.5:ENST00000510524.5:ENST00000690617.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	57	2	2.46839	4.027595	5.5868	0.0683019	0.020474	0.193274	0.0979776
chr2	55023688	55023787	1148264	0	-	0.313131	(0.29,0.33]	chr2	125466	93	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	2.52708	4.0274	5.52772	0.0944237	0.00324812	0.188571	0.0319647
chr1	167985097	167985197	267638	0	+	0.48	(0.45,0.485]	chr1	31456	97	INTRON	INTRON	DCAF6	ENSG00000143164.16	ENST00000450548.5:ENST00000470919.5:ENST00000432587.6:ENST00000367843.7:ENST00000470721.5:ENST00000367840.4:ENST00000312263.10:ENST00000455334.5:ENST00000491067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	149	2	3.94271	4.02738	4.11205	0.0110873	0.00190576	0.0712729	0.0222917
chr16	15125450	15125550	6555053	0	-	0.64	(0.58,1]	chr16	652703	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000270580:PKD1P6	ENSG00000270580.5:ENSG00000250251.6	ENST00000605794.5:ENST00000340301.5:ENST00000343738.10	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	2	66	2	2.74604	4.026755	5.30747	0.0196049	0.015009	0.0955413	0.0852854
chr22	35749497	35749595	7803008	0	-	0.367347	(0.36,0.39]	chr22	817681	31	UTR3	UTR3:EXON_MRNA:INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1:ENST00000405409.6:ENST00000695803.1:ENST00000449924.6:ENST00000414461.6:ENST00000262829.11:ENST00000397303.6:ENST00000695804.1:ENST00000359369.8:ENST00000695805.1:ENST00000695806.1:ENST00000416721.6:ENST00000495377.6:ENST00000695807.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	69	2	2.73901	4.02671	5.31441	0.0786198	0.00715023	0.175203	0.0541241
chr6	158324767	158324867	3061769	0	+	0.38	(0.36,0.39]	chr6	297592	101	INTRON	INTRON	ENSG00000274023:TULP4	ENSG00000274023.1:ENSG00000130338.13	ENST00000619713.1:ENST00000367097.8:ENST00000367094.6:ENST00000616856.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	1	60	2	3.49254	4.02665	4.56076	0.103289	0.00987589	0.197541	0.0664239
chr15	99602808	99602908	6198709	0	+	0.39	(0.36,0.39]	chr15	609964	3	INTRON	INTRON	MEF2A	ENSG00000068305.18	ENST00000560493.5:ENST00000354410.9:ENST00000558812.5:ENST00000558856.5:ENST00000685785.1:ENST00000559036.5:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000558049.5:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1:ENST00000559903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	56	2	3.00362	4.026555	5.04949	0.0563927	0.027769	0.154188	0.12074
chr7	137999810	137999910	3720701	0	-	0.29	[0,0.29]	chr7	357309	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5:ENST00000468127.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	2.66408	4.02644	5.3888	0.0466601	0.0183035	0.156477	0.0922556
chr15	99603707	99603807	6198718	0	+	0.32	(0.29,0.33]	chr15	609964	12	INTRON	INTRON	MEF2A	ENSG00000068305.18	ENST00000560493.5:ENST00000354410.9:ENST00000558812.5:ENST00000558856.5:ENST00000685785.1:ENST00000559036.5:ENST00000557785.5:ENST00000558983.5:ENST00000557942.6:ENST00000338042.11:ENST00000558049.5:ENST00000449277.6:ENST00000690055.1:ENST00000691492.1:ENST00000686611.1:ENST00000559903.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	54	2	2.78168	4.02611	5.27054	0.0393252	0.0308815	0.143321	0.119556
chr20	17629037	17629132	7531895	0	-	0.536842	(0.523,0.58]	chr20	785999	10	INTRON	INTRON	RRBP1	ENSG00000125844.17	ENST00000360807.8:ENST00000377807.6:ENST00000246043.8:ENST00000377813.6:ENST00000455029.3:ENST00000495501.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	86	2	2.39426	4.025875	5.65749	0.024413	0.0182707	0.11333	0.0921579
chr11	70789548	70789648	5062177	0	-	0.54	(0.523,0.58]	chr11	492701	717	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	72	2	2.78812	4.02572	5.26332	0.0337698	0.0160129	0.124319	0.0894586
chr4	1322700	1322798	1995263	0	+	0.540816	(0.523,0.58]	chr4	203257	2	SS5_PROX	SS5_PROX:INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	53	2	3.03457	4.02567	5.01677	0.0482765	0.0231444	0.144601	0.109883
chr10	48041431	48041530	4680780	0	-	0.555556	(0.523,0.58]	chr10	446508	20	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	1	53	2	2.98158	4.025575	5.06957	0.0448011	0.0258432	0.140478	0.116361
chr3	58131833	58131926	1484307	0	+	0.365591	(0.36,0.39]	chr3	159714	11	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	FLNB	ENSG00000136068.16	ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000493452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	154	2	3.55381	4.0253499999999995	4.49689	0.0235949	8.16219e-4	0.104873	0.0123385
chr1	155975597	155975695	599937	0	-	0.591837	(0.58,1]	chr1	70603	34	INTRON	INTRON	ARHGEF2	ENSG00000116584.22	ENST00000313695.11:ENST00000361247.9:ENST00000477754.2:ENST00000673475.1:ENST00000462460.6:ENST00000313667.8:ENST00000471589.5:ENST00000476273.1:ENST00000497907.5:ENST00000465079.1:ENST00000495070.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	61	2	3.02751	4.025325	5.02314	0.0385189	0.00638322	0.131324	0.0501889
chr16	81550180	81550280	6508795	0	+	0.47	(0.45,0.485]	chr16	645911	543	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	2.54618	4.0252	5.50422	0.0285948	0.0257993	0.123344	0.109555
chr6	52553124	52553224	3148209	0	-	0.38	(0.36,0.39]	chr6	307028	169	INTRON	INTRON	TRAM2	ENSG00000065308.5	ENST00000182527.4	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.48379	4.025164999999999	5.56654	0.0714535	0.0272676	0.198579	0.112327
chr16	85452709	85452809	6517598	0	+	0.61	(0.58,1]	chr16	646391	934	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.38295	4.024965	5.66698	0.0730701	0.0102927	0.199669	0.0684871
chr3	149179662	149179756	1939223	0	-	0.393617	(0.39,0.419]	chr3	197323	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CP	ENSG00000047457.14	ENST00000481169.5:ENST00000264613.11:ENST00000460674.5:ENST00000494544.1:ENST00000463556.5:ENST00000490639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	108	2	2.83637	4.024905	5.21344	0.0382648	0.00893514	0.131324	0.0620271
chr20	50904098	50904195	7577088	0	-	0.412371	(0.39,0.419]	chr20	791662	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ADNP	ENSG00000101126.18	ENST00000371602.9:ENST00000621696.5:ENST00000673732.1:ENST00000396029.8:ENST00000644386.1:ENST00000396032.8:ENST00000349014.8:ENST00000645081.1:ENST00000642364.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	2.90127	4.02475	5.14823	0.0501234	0.0339406	0.147892	0.133629
chr2	9350110	9350208	714525	0	+	0.357143	(0.33,0.36]	chr2	83433	50	INTRON	INTRON	ASAP2	ENSG00000151693.11	ENST00000315273.4:ENST00000281419.8:ENST00000641030.1	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.98982	4.024509999999999	5.0592	0.0504445	0.027642	0.148216	0.120359
chr1	213990380	213990480	339379	0	+	0.47	(0.45,0.485]	chr1	38089	2	INTRON	INTRON	PROX1	ENSG00000117707.16	ENST00000471129.1:ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2:ENST00000607425.1	protein_coding	protein_coding	protein_coding	protein_coding	4	269	2	3.46519	4.024075	4.58296	0.0120682	1.37974e-4	0.0745322	0.00347229
chr16	81483071	81483170	6508122	0	+	0.535354	(0.523,0.58]	chr16	645906	372	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	5	298	2	3.41884	4.023915	4.62899	0.00663228	3.98321e-4	0.0540577	0.00743377
chr14	91219544	91219643	5899551	0	+	0.535354	(0.523,0.58]	chr14	576431	27	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000522816.1:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	53	2	3.08569	4.02383	4.96197	0.0521137	0.020773	0.148503	0.102713
chr18	704979	705078	7103032	0	-	0.555556	(0.523,0.58]	chr18	723437	73	INTRON	INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000584453.5:ENST00000578651.5:ENST00000585004.5:ENST00000579053.5:ENST00000583771.1:ENST00000580605.5:ENST00000581332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	53	2	3.08569	4.02383	4.96197	0.0521137	0.020773	0.148503	0.102713
chr20	341019	341119	7511853	0	-	0.57	(0.523,0.58]	chr20	783986	159	INTRON	INTRON	NRSN2-AS1	ENSG00000225377.6	ENST00000442637.2:ENST00000662580.1	lncRNA	lncRNA	lncRNA	lncRNA	1	53	2	3.08569	4.02383	4.96197	0.0521137	0.020773	0.148503	0.102713
chr2	152594043	152594143	928059	0	+	0.46	(0.45,0.485]	chr2	103106	126	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14:ENST00000492942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	149	2	3.35641	4.023795	4.69118	0.0297105	3.85858e-4	0.116341	0.00727473
chr8	9586782	9586882	3753004	0	+	0.39	(0.36,0.39]	chr8	360707	60	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000520408.5:ENST00000518281.5	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.85025	4.02369	5.19713	0.0462258	0.0373341	0.143138	0.139793
chrX	52897693	52897791	7882797	0	+	0.581633	(0.58,1]	chrX	826612	5	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	FAM156B	ENSG00000179304.18	ENST00000610405.4:ENST00000619346.4:ENST00000610609.4:ENST00000612188.4:ENST00000616419.4:ENST00000416841.8:ENST00000593751.7	protein_coding	protein_coding	protein_coding	protein_coding	1	78	2	3.75278	4.02366	4.29454	0.0305531	0.01024	0.126768	0.0684871
chr11	64145060	64145160	5049028	0	-	0.57	(0.523,0.58]	chr11	490257	183	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	53	2	2.92656	4.02353	5.1205	0.0416463	0.0289226	0.136301	0.124
chr17	80222947	80223013	6806847	0	+	0.575758	(0.523,0.58]	chr17	687269	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC26A11	ENSG00000181045.15	ENST00000577155.5:ENST00000361193.8:ENST00000573809.5:ENST00000546047.6:ENST00000411502.7:ENST00000571888.5:ENST00000576126.5:ENST00000571602.5:ENST00000572725.5:ENST00000571564.5:ENST00000572226.1:ENST00000571176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	53	2	2.92656	4.02353	5.1205	0.0416463	0.0289226	0.136301	0.124
chr20	3900252	3900351	7422128	0	+	0.515152	(0.485,0.523]	chr20	773241	85	INTRON	INTRON	PANK2	ENSG00000125779.24	ENST00000497424.5:ENST00000316562.9:ENST00000495692.5:ENST00000610179.7:ENST00000643504.2:ENST00000336066.8:ENST00000646394.1:ENST00000621507.1:ENST00000471830.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	54	2	3.26255	4.023405	4.78426	0.0660335	0.0142848	0.162385	0.0833845
chr6	167891229	167891329	3073991	0	+	0.25	[0,0.29]	chr6	298835	2	SS5_PROX	SS5_PROX:INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	61	2	2.88423	4.023105	5.16198	0.0500742	0.00622515	0.147892	0.0496245
chr6	149545435	149545535	3287844	0	-	0.6	(0.58,1]	chr6	317742	1	SS5_PROX	SS5_PROX:INTRON	PPIL4	ENSG00000131013.4	ENST00000253329.3	protein_coding	protein_coding	protein_coding	protein_coding	3	79	2	2.37881	4.022895	5.66698	0.0219036	0.0102927	0.106977	0.0684871
chr13	113330677	113330777	5753237	0	-	0.6	(0.58,1]	chr13	564094	42	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	4	94	2	1.80292	4.022685	6.24245	0.059442300000000003	0.00334087	0.176598	0.0368376
chr2	127302033	127302132	1264777	0	-	0.343434	(0.33,0.36]	chr2	136284	35	UTR3	UTR3:EXON_MRNA	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.88577	4.022539999999999	5.15931	0.043896	0.0339073	0.139792	0.133585
chr3	48168344	48168444	1766078	0	-	0.55	(0.523,0.58]	chr3	182044	4	SS3_PROX	SS3_PROX:INTRON	CDC25A	ENSG00000164045.12	ENST00000302506.8:ENST00000351231.7:ENST00000459900.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	68	2	3.01567	4.02247	5.02927	0.0482042	0.0095202	0.144601	0.0650078
chr12	120248615	120248715	5522143	0	-	0.5	(0.485,0.523]	chr12	543974	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PXN	ENSG00000089159.17	ENST00000267257.11:ENST00000228307.11:ENST00000424649.6:ENST00000637617.2:ENST00000458477.6:ENST00000323871.9:ENST00000547983.5:ENST00000551327.5:ENST00000440827.3:ENST00000547746.1:ENST00000550205.1:ENST00000547772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	54	2	2.7365	4.022435	5.30837	0.0423471	0.0314138	0.149195	0.12069
chr6	2429286	2429386	2826230	0	+	0.45	(0.419,0.45]	chr6	277315	158	INTRON	INTRON	GMDS-DT	ENSG00000250903.10	ENST00000657072.1:ENST00000659523.1:ENST00000659643.1:ENST00000660978.1:ENST00000691547.1:ENST00000654526.1:ENST00000670895.1:ENST00000657589.1:ENST00000607519.2:ENST00000662000.1	lncRNA	lncRNA	lncRNA	lncRNA	1	71	2	2.7886	4.022375	5.25615	0.0766427	0.00879729	0.174882	0.0615125
chr2	161327456	161327556	939074	0	+	0.39	(0.36,0.39]	chr2	103725	82	INTRON	INTRON	PSMD14	ENSG00000115233.12	ENST00000409682.8:ENST00000437630.1	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	2.71329	4.022175	5.33106	0.0383628	0.0215921	0.131324	0.105648
chr7	47350241	47350340	3587293	0	-	0.50505	(0.485,0.523]	chr7	346030	35	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	75	2	2.13331	4.021855	5.9104	0.0626854	0.0119344	0.181933	0.0741726
chr11	585365	585465	4784870	0	+	0.53	(0.523,0.58]	chr11	457988	29	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	90	2	2.3839	4.021745	5.65959	0.0679164	0.0021416	0.164413	0.0240825
chr12	132792481	132792579	5540386	0	-	0.622449	(0.58,1]	chr12	546816	8	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	50	2	2.78186	4.02162	5.26138	0.0342923	0.021217	0.13449	0.0996078
chr9	133854688	133854788	4428945	0	-	0.49	(0.485,0.523]	chr9	423304	200	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	3	193	2	3.29351	4.02144	4.74937	0.0151888	2.8864e-4	0.084474	0.00590733
chr12	6338207	6338306	5362089	0	-	0.585859	(0.58,1]	chr12	525042	36	INTRON	INTRON	TNFRSF1A	ENSG00000067182.8	ENST00000534885.5:ENST00000162749.7:ENST00000543995.5:ENST00000540022.5:ENST00000539372.5:ENST00000366159.8:ENST00000543048.5:ENST00000440083.6:ENST00000536194.1:ENST00000535958.1:ENST00000538363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	3.09402	4.02142	4.94882	0.0354433	0.0174733	0.127188	0.0928044
chr1	1270912	1271009	380700	0	-	0.597938	(0.58,1]	chr1	42922	26	INTRON	INTRON	UBE2J2	ENSG00000160087.21	ENST00000450390.6:ENST00000349431.11:ENST00000347370.6:ENST00000400929.6:ENST00000464036.5:ENST00000360466.6:ENST00000400930.8:ENST00000473215.5:ENST00000435198.5:ENST00000509720.5:ENST00000491779.5:ENST00000466752.5:ENST00000503294.5:ENST00000477894.5:ENST00000422076.5:ENST00000502382.1:ENST00000461142.3:ENST00000488418.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	3.03676	4.021305	5.00585	0.0323732	0.0198789	0.121593	0.100864
chr1	9904906	9905006	398784	0	-	0.48	(0.45,0.485]	chr1	45393	118	INTRON	INTRON	CTNNBIP1	ENSG00000178585.15	ENST00000377263.6:ENST00000400904.7	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.98123	4.021305	5.06138	0.0492008	0.0270875	0.146142	0.119337
chr1	44240720	44240819	459578	0	-	0.59596	(0.58,1]	chr1	55299	80	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	3.03676	4.021305	5.00585	0.0323732	0.0198789	0.121593	0.100864
chr12	53190272	53190372	5235230	0	+	0.64	(0.58,1]	chr12	508673	28	UTR3	UTR3:EXON_MRNA	ZNF740	ENSG00000139651.11	ENST00000416904.5	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	3.03676	4.021305	5.00585	0.0323732	0.0198789	0.121593	0.100864
chr6	63658769	63658869	2934493	0	+	0.49	(0.485,0.523]	chr6	288800	116	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5:ENST00000393387.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	479	2	3.92485	4.021075	4.1173	0.00212642	2.09492e-4	0.0289767	0.00467341
chr16	89300521	89300618	6659811	0	-	0.546392	(0.523,0.58]	chr16	666649	18	UTR3	UTR3:EXON_MRNA:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	123	2	2.22118	4.020785	5.82039	0.0193363	0.0139724	0.0994526	0.0805959
chr1	36348399	36348499	446523	0	-	0.52	(0.485,0.523]	chr1	53266	3	SS5_PROX	SS5_PROX:INTRON	STK40	ENSG00000196182.11	ENST00000373130.7:ENST00000373129.7:ENST00000359297.6:ENST00000373132.4	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.38908	4.02053	4.65198	0.0783889	0.0107186	0.175203	0.0700744
chr20	4949805	4949905	7518058	0	-	0.5	(0.485,0.523]	chr20	784900	167	INTRON	INTRON	SLC23A2	ENSG00000089057.15	ENST00000379333.5:ENST00000338244.6:ENST00000468355.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	3.02337	4.02028	5.01719	0.0480495	0.023933	0.144601	0.111785
chr3	188284444	188284544	1653103	0	+	0.52	(0.485,0.523]	chr3	173754	439	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.02337	4.02028	5.01719	0.0480495	0.023933	0.144601	0.111785
chr15	57265365	57265465	6113841	0	+	0.51	(0.485,0.523]	chr15	601723	17	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000557843.5:ENST00000543579.5:ENST00000537840.5:ENST00000343827.7:ENST00000559710.5:ENST00000559703.1:ENST00000561420.5:ENST00000561449.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	2.97038	4.020185	5.06999	0.0445854	0.0267011	0.140478	0.118343
chr20	62959137	62959233	7508288	0	+	0.614583	(0.58,1]	chr20	783180	12	INTRON	INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	125	2	3.93773	4.020105	4.10248	0.00708574	0.0012583	0.0558168	0.0167083
chr7	102419837	102419936	3439265	0	+	0.494949	(0.485,0.523]	chr7	332773	120	INTRON	INTRON	PRKRIP1	ENSG00000128563.13	ENST00000469763.5:ENST00000482549.5:ENST00000496391.5:ENST00000482465.5:ENST00000462601.5:ENST00000397912.3:ENST00000468316.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	80	2	3.51828	4.01985	4.52142	0.0273555	0.0214738	0.119337	0.100517
chrX	133895659	133895759	8115124	0	-	0.38	(0.36,0.39]	chrX	845529	607	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	256	2	3.96965	4.019685	4.06972	0.0118732	4.04757e-4	0.0741071	0.00753546
chr12	132741891	132741986	5539919	0	-	0.368421	(0.36,0.39]	chr12	546701	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ANKLE2	ENSG00000176915.15	ENST00000357997.10:ENST00000539605.5:ENST00000439231.6:ENST00000538591.5:ENST00000535036.5:ENST00000545623.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	69	2	2.77391	4.019495	5.26508	0.0750023	0.00795848	0.172839	0.0578938
chr16	89222869	89222962	6523492	0	+	0.666667	(0.58,1]	chr16	647081	3	SS3_PROX	SS3_PROX:INTRON	ZNF778	ENSG00000170100.14	ENST00000433976.7:ENST00000620195.4:ENST00000564906.5:ENST00000567651.5:ENST00000306502.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	3.1491	4.019275	4.88945	0.0388928	0.0154006	0.131324	0.0869771
chr7	1009549	1009649	3526318	0	-	0.67	(0.58,1]	chr7	340567	2	SS5_PROX	SS5_PROX:INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	3.1491	4.019275	4.88945	0.0388928	0.0154006	0.131324	0.0869771
chr15	64989373	64989405	6301669	0	-	0.71875	(0.58,1]	chr15	621084	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SPG21	ENSG00000090487.11	ENST00000204566.7:ENST00000433215.6:ENST00000561078.5:ENST00000416889.6:ENST00000558765.5:ENST00000557795.5:ENST00000560564.1:ENST00000559677.5:ENST00000558415.5:ENST00000558339.1:ENST00000561088.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	123	2	3.75278	4.01923	4.28568	0.01024	7.30957e-4	0.0684871	0.0113963
chr1	113449242	113449342	211782	0	+	0.37	(0.36,0.39]	chr1	23359	449	INTRON	INTRON	MAGI3	ENSG00000081026.19	ENST00000307546.14:ENST00000369617.8:ENST00000369615.5:ENST00000369611.4:ENST00000486456.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	2.79528	4.0192250000000005	5.24317	0.0433841	0.0413701	0.148333	0.138813
chr2	55022093	55022193	1148248	0	-	0.39	(0.36,0.39]	chr2	125466	77	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.79528	4.0192250000000005	5.24317	0.0433841	0.0413701	0.148333	0.138813
chr3	195241595	195241694	1982442	0	-	0.555556	(0.523,0.58]	chr3	201717	144	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000429994.5:ENST00000418940.5:ENST00000494175.1:ENST00000455281.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	89	2	2.73046	4.0192049999999995	5.30795	0.0315825	0.0111452	0.120781	0.071709
chr4	156921849	156921949	2357657	0	-	0.46	(0.45,0.485]	chr4	235535	480	INTRON	INTRON	PDGFC	ENSG00000145431.11	ENST00000502773.6:ENST00000274071.6:ENST00000422544.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	74	2	2.28891	4.01902	5.74913	0.0479351	0.017574	0.159092	0.0906595
chr14	104791504	104791603	6057807	0	-	0.626263	(0.58,1]	chr14	594709	53	INTRON	INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000683722.1:ENST00000555528.5:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000554848.5:ENST00000682269.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	49	2	2.97713	4.018915	5.0607	0.029633	0.0226795	0.116079	0.108193
chr4	716934	717033	1993797	0	+	0.59596	(0.58,1]	chr4	203088	106	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	2.97713	4.018915	5.0607	0.029633	0.0226795	0.116079	0.108193
chr17	80876925	80877025	6812240	0	+	0.68	(0.58,1]	chr17	687891	187	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	2.40217	4.018800000000001	5.63543	0.100879	0.00131165	0.196131	0.0171898
chr19	49988492	49988592	7397954	0	-	0.6	(0.58,1]	chr19	769506	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	VRK3	ENSG00000105053.11	ENST00000316763.8:ENST00000377011.6:ENST00000599538.5:ENST00000596814.5:ENST00000601341.5:ENST00000594948.5:ENST00000601912.5:ENST00000594092.5:ENST00000593912.5:ENST00000600284.5:ENST00000593919.5:ENST00000594090.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	59	2	2.40217	4.018800000000001	5.63543	0.100879	0.00131165	0.196131	0.0171898
chr17	75375031	75375131	6971764	0	-	0.46	(0.45,0.485]	chr17	711059	14	INTRON	INTRON	GRB2	ENSG00000177885.15	ENST00000316615.9:ENST00000316804.10:ENST00000392562.5:ENST00000392564.5:ENST00000392563.5:ENST00000648046.1:ENST00000578961.5:ENST00000582582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	73	2	2.42327	4.01879	5.61431	0.0367983	0.0217589	0.139793	0.100615
chr2	179129224	179129323	1327040	0	-	0.353535	(0.33,0.36]	chr2	141646	43	INTRON	INTRON	SESTD1	ENSG00000187231.14	ENST00000428443.8:ENST00000335289.5:ENST00000426988.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	74	2	2.61341	4.01854	5.42367	0.0299185	0.0257767	0.116945	0.116361
chr13	113588244	113588344	5658882	0	+	0.64	(0.58,1]	chr13	555775	20	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	127	2	3.29173	4.018315	4.7449	0.0243429	1.74253e-4	0.106588	0.00410754
chr13	111284061	111284160	5652315	0	+	0.494949	(0.485,0.523]	chr13	554854	3	INTRON	INTRON	ARHGEF7	ENSG00000102606.19	ENST00000317133.9:ENST00000375739.6:ENST00000375741.6:ENST00000646102.2:ENST00000218789.9:ENST00000375736.8:ENST00000426073.6:ENST00000375723.5:ENST00000478679.5:ENST00000491688.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	2.91537	4.018145	5.12092	0.0414411	0.0298565	0.136301	0.126732
chr16	78630147	78630247	6500715	0	+	0.44	(0.419,0.45]	chr16	645695	554	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000684632.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6:ENST00000408984.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	92	2	3.41349	4.01811	4.62273	0.103601	0.00450613	0.197541	0.040048
chr5	1477686	1477786	2609506	0	-	0.6	(0.58,1]	chr5	259820	2	SS3_PROX	SS3_PROX:INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	279	2	3.14592	4.017995	4.89007	0.00872525	0.00493007	0.0612699	0.045935
chr2	233164924	233165023	1058275	0	+	0.626263	(0.58,1]	chr2	115120	1	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493078.1:ENST00000472517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	124	2	3.87867	4.017955	4.15724	0.00797934	0.00107173	0.0596361	0.0148869
chr3	171699926	171700026	1957437	0	-	0.36	(0.33,0.36]	chr3	199005	1	SS3_PROX	SS3_PROX:INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9:ENST00000481505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	200	2	3.78852	4.017665	4.24681	0.00658411	0.00150761	0.0538298	0.0189108
chr3	125367907	125368007	1902705	0	-	0.4	(0.39,0.419]	chr3	193003	102	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000471196.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.7933500000000002	4.017585	5.24182	0.0441194	0.0415789	0.148959	0.140174
chr2	222911730	222911829	1038218	0	+	0.363636	(0.36,0.39]	chr2	113229	1	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000542810.1:ENST00000540115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	70	2	2.87382	4.017435	5.16105	0.0653866	0.00993384	0.162385	0.0666221
chr20	3191821	3191921	7515112	0	-	0.48	(0.45,0.485]	chr20	784521	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	DDRGK1	ENSG00000198171.13	ENST00000354488.8:ENST00000470203.1:ENST00000380201.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.87326	4.0173749999999995	5.16149	0.0427653	0.033576	0.13762	0.133139
chr16	50622108	50622208	6452150	0	+	0.62	(0.58,1]	chr16	639917	4	SS5_PROX	SS5_PROX:INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	4	202	2	3.07412	4.0172550000000005	4.96039	0.0111082	8.61583e-5	0.0713811	0.00245309
chr11	70740186	70740285	5061683	0	-	0.535354	(0.523,0.58]	chr11	492701	223	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.68276	4.0169999999999995	5.35124	0.0464998	0.0295772	0.156036	0.116079
chr13	50208906	50209006	5594685	0	+	0.58	(0.523,0.58]	chr13	551532	225	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000485007.5:ENST00000475913.5:ENST00000484529.5	lncRNA	lncRNA	lncRNA	lncRNA	1	54	2	2.68276	4.0169999999999995	5.35124	0.0464998	0.0295772	0.156036	0.116079
chr16	74932382	74932481	6643621	0	-	0.414141	(0.39,0.419]	chr16	664275	17	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000616369.4:ENST00000536050.5:ENST00000568462.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	208	2	3.74786	4.01611	4.28436	0.00698815	0.00182261	0.0555241	0.021657
chr21	42849773	42849865	7675470	0	-	0.554348	(0.523,0.58]	chr21	802288	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6:ENST00000476326.5:ENST00000398208.3:ENST00000492742.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	247	2	3.7036	4.015924999999999	4.32825	0.0156851	1.22697e-4	0.0852152	0.00320225
chr10	102645921	102646021	4576483	0	+	0.55	(0.523,0.58]	chr10	437279	1	SS5_PROX	SS5_PROX:INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	71	2	2.68048	4.01586	5.35124	0.0295772	0.020416	0.116079	0.102668
chr11	71138123	71138223	5065681	0	-	0.61	(0.58,1]	chr11	492790	187	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.63525	4.015355	5.39546	0.0459151	0.0168207	0.154743	0.0884836
chr22	50711738	50711838	7755303	0	+	0.63	(0.58,1]	chr22	812782	1	SS5_PROX	SS5_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	2.63525	4.015355	5.39546	0.0459151	0.0168207	0.154743	0.0884836
chr10	75884025	75884124	4525009	0	+	0.242424	[0,0.29]	chr10	432292	1	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	3.031	4.0151200000000005	4.99924	0.0347661	0.0223108	0.126529	0.108193
chr12	26414104	26414204	5397346	0	-	0.31	(0.29,0.33]	chr12	528440	23	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000451599.6:ENST00000538984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	53	2	2.95342	4.01509	5.07676	0.0412683	0.0280419	0.136301	0.121542
chr3	195150593	195150693	1981519	0	-	0.66	(0.58,1]	chr3	201666	37	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000437101.5:ENST00000473200.1:ENST00000429994.5:ENST00000418940.5:ENST00000491138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	3.20215	4.01484	4.82753	0.0427798	0.0136092	0.13762	0.0811697
chr8	8853096	8853196	3935332	0	-	0.49	(0.485,0.523]	chr8	376197	311	INTRON	INTRON	MFHAS1	ENSG00000147324.11	ENST00000276282.7:ENST00000521881.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	3.12385	4.014635	4.90542	0.0561086	0.0193526	0.154188	0.0994526
chr6	36067401	36067501	2904695	0	+	0.43	(0.419,0.45]	chr6	284907	77	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000622903.4:ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5:ENST00000472333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	2.7072600000000002	4.014605	5.32195	0.0496323	0.0431627	0.160725	0.138403
chr4	886375	886473	2178466	0	-	0.693878	(0.58,1]	chr4	220626	7	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	124	2	3.89863	4.014374999999999	4.13012	0.00766639	0.00116063	0.0583292	0.0157704
chr15	73685283	73685383	6150484	0	+	0.52	(0.485,0.523]	chr15	604911	2	SS5_PROX	SS5_PROX:INTRON	CD276	ENSG00000103855.18	ENST00000567189.5:ENST00000537340.6:ENST00000318424.9:ENST00000318443.10:ENST00000560786.6:ENST00000558689.5:ENST00000561213.5:ENST00000560928.5:ENST00000563584.5:ENST00000561416.5:ENST00000560995.5:ENST00000567582.5:ENST00000561260.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	2.85817	4.014145	5.17012	0.038581	0.0334631	0.133139	0.131324
chr16	29268914	29269014	6433526	0	+	0.53	(0.523,0.58]	chr16	636745	168	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	2	144	2	3.9866	4.014135	4.04167	0.00948884	0.00206682	0.0656203	0.0235758
chr2	163655604	163655704	1295518	0	-	0.34	(0.33,0.36]	chr2	139073	434	INTRON	INTRON	FIGN	ENSG00000182263.14	ENST00000409634.5:ENST00000333129.4:ENST00000482917.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	58	2	3.45733	4.01384	4.57035	0.0945416	0.0102015	0.188571	0.0678072
chr20	36854987	36855087	7557051	0	-	0.58	(0.523,0.58]	chr20	789155	152	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	2.53438	4.0138	5.49322	0.0957531	0.00324246	0.189038	0.0319521
chr6	158244493	158244593	3060960	0	+	0.49	(0.485,0.523]	chr6	297572	118	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	73	2	2.23742	4.013545000000001	5.78967	0.0515447	0.0146211	0.165949	0.0826064
chr3	12965498	12965597	1688784	0	-	0.545455	(0.523,0.58]	chr3	176520	45	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	2.80981	4.01354	5.21727	0.0364868	0.0361597	0.139793	0.127853
chr19	941222	941321	7185258	0	+	0.717172	(0.58,1]	chr19	730741	81	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	230	2	3.99252	4.0134	4.03428	0.0022729	4.52248e-4	0.030139	0.00816702
chr5	55949679	55949778	2661743	0	-	0.343434	(0.33,0.36]	chr5	263927	3	INTRON	INTRON	IL6ST	ENSG00000134352.20	ENST00000381298.7:ENST00000336909.9:ENST00000381287.8:ENST00000651614.1:ENST00000503773.6:ENST00000502326.7:ENST00000381294.7:ENST00000583149.1:ENST00000381293.6:ENST00000381286.7:ENST00000522633.2:ENST00000423954.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	102	2	2.18637	4.01337	5.84037	0.0319436	0.0156381	0.129547	0.0850479
chr17	82572569	82572669	6817310	0	+	0.33	(0.29,0.33]	chr17	689063	3	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000531030.5:ENST00000526383.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	3.05751	4.013325	4.96914	0.0481918	0.0226356	0.144601	0.108193
chr20	62277977	62278076	7506888	0	+	0.575758	(0.523,0.58]	chr20	782712	42	INTRON	INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	267	2	3.98607	4.013154999999999	4.04024	0.00377156	6.93994e-4	0.039612	0.0109801
chr7	139703144	139703244	3723177	0	-	0.27	[0,0.29]	chr7	357498	711	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.08401	4.013120000000001	4.94223	0.0379936	0.0199046	0.131324	0.100864
chr11	70810469	70810569	5062388	0	-	0.55	(0.523,0.58]	chr11	492713	29	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	2.57767	4.01306	5.44845	0.090356	0.00361636	0.186369	0.0342681
chr2	239278579	239278679	1391494	0	-	0.56	(0.523,0.58]	chr2	148740	270	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	64	2	2.57767	4.01306	5.44845	0.090356	0.00361636	0.186369	0.0342681
chr2	186179789	186179889	1339102	0	-	0.45	(0.419,0.45]	chr2	142319	7	INTRON	INTRON	LINC01473	ENSG00000237877.7	ENST00000658984.1:ENST00000658990.1:ENST00000655126.1:ENST00000667839.1:ENST00000670612.1:ENST00000668985.1:ENST00000661574.1:ENST00000666677.1:ENST00000665629.1:ENST00000419719.2:ENST00000667056.1:ENST00000671599.1	lncRNA	lncRNA	lncRNA	lncRNA	2	76	2	2.54153	4.012315	5.4831	0.0345118	0.0316792	0.128518	0.126025
chr20	36857080	36857179	7557072	0	-	0.545455	(0.523,0.58]	chr20	789155	173	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	2.43762	4.01221	5.5868	0.0343548	0.020474	0.134666	0.0979776
chr17	2679021	2679119	6667320	0	+	0.336735	(0.33,0.36]	chr17	667990	10	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000397195.10:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000397193.7:ENST00000574468.1:ENST00000571495.2:ENST00000675574.1:ENST00000675385.1:ENST00000675084.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	57	2	3.38283	4.01207	4.64131	0.0867669	0.0120576	0.182221	0.0754623
chr2	235510735	235510835	1062703	0	+	0.55	(0.523,0.58]	chr2	115651	155	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	200	2	3.63858	4.01207	4.38556	0.00811859	8.02365e-4	0.0602929	0.0121806
chr8	128037227	128037326	3920252	0	+	0.40404	(0.39,0.419]	chr8	374311	46	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1	lncRNA	lncRNA	lncRNA	lncRNA	1	56	2	3.14029	4.011975	4.88366	0.0707789	0.0211243	0.168159	0.103778
chr10	7722077	7722177	4442137	0	+	0.49	(0.485,0.523]	chr10	425523	3	SS5_PROX	SS5_PROX:INTRON	ITIH2	ENSG00000151655.19	ENST00000358415.9:ENST00000379587.4	protein_coding	protein_coding	protein_coding	protein_coding	7	132	2	2.08475	4.011905	5.93906	0.0241212	0.0113657	0.11263	0.0723462
chr11	121479941	121480041	4953932	0	+	0.67	(0.58,1]	chr11	478664	13	INTRON	INTRON	SORL1	ENSG00000137642.13	ENST00000260197.12:ENST00000532451.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	3.13234	4.011205	4.89007	0.0322188	0.00872525	0.121593	0.0612699
chr16	81625793	81625893	6509555	0	+	0.57	(0.523,0.58]	chr16	645926	37	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	4	265	2	4.00646	4.011184999999999	4.01591	0.00402768	6.36322e-4	0.0411954	0.0103364
chr16	81542282	81542382	6508716	0	+	0.46	(0.45,0.485]	chr16	645911	464	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	2.24119	4.011075	5.78096	0.0525018	0.0166968	0.167062	0.0884836
chr10	119253734	119253834	4593784	0	+	0.53	(0.523,0.58]	chr10	439167	407	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	2.6197	4.010975	5.40225	0.0853454	0.00404292	0.181766	0.0371291
chr17	76544871	76544970	6977053	0	-	0.646465	(0.58,1]	chr17	712264	73	INTRON	INTRON	CYGB	ENSG00000161544.10	ENST00000589145.1	protein_coding	protein_coding	protein_coding	protein_coding	2	70	2	3.19406	4.010795	4.82753	0.0427798	0.00474968	0.13762	0.0413976
chr19	2204556	2204655	7188904	0	+	0.59596	(0.58,1]	chr19	731581	14	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.06331	4.010725	4.95814	0.036259	0.0074469	0.127941	0.0553519
chr9	134344025	134344125	4260863	0	+	0.59	(0.58,1]	chr9	406311	170	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	61	2	3.06331	4.010725	4.95814	0.036259	0.0074469	0.127941	0.0553519
chr11	3023404	3023503	4973064	0	-	0.545455	(0.523,0.58]	chr11	481389	27	INTRON	INTRON	CARS1	ENSG00000110619.18	ENST00000397111.9:ENST00000531387.5:ENST00000380525.9:ENST00000278224.13:ENST00000529772.5:ENST00000526890.5:ENST00000465240.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	55	2	3.44013	4.010355000000001	4.58058	0.0860403	0.00938609	0.181766	0.064735
chr2	101133341	101133441	1239917	0	-	0.5	(0.485,0.523]	chr2	133786	235	INTRON	INTRON	TBC1D8	ENSG00000204634.13	ENST00000409318.2:ENST00000376840.8:ENST00000463469.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	2.62192	4.010305	5.39869	0.0849566	0.00421243	0.181766	0.0380601
chr20	2983285	2983385	7418774	0	+	0.49	(0.485,0.523]	chr20	772743	77	INTRON	INTRON	PTPRA	ENSG00000132670.21	ENST00000455631.5:ENST00000399903.7:ENST00000216877.10:ENST00000318266.9:ENST00000430705.5:ENST00000356147.3	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	2.62192	4.010305	5.39869	0.0849566	0.00421243	0.181766	0.0380601
chr2	239349279	239349379	1392203	0	-	0.57	(0.523,0.58]	chr2	148752	248	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	85	2	2.36236	4.009925	5.65749	0.0261999	0.0182707	0.117385	0.0921579
chr22	37512241	37512339	7808329	0	-	0.55102	(0.523,0.58]	chr22	818439	1	INTRON	INTRON	CARD10	ENSG00000100065.15	ENST00000403299.5:ENST00000251973.10:ENST00000494166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	153	2	3.75634	4.009875	4.26341	0.00569356	0.00434055	0.0497715	0.0390182
chr13	97369649	97369749	5632288	0	+	0.51	(0.485,0.523]	chr13	553226	27	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000449284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	71	2	2.4689	4.00972	5.55054	0.0324744	0.0215787	0.130627	0.100612
chr20	58682401	58682500	7498501	0	+	0.474747	(0.45,0.485]	chr20	781977	30	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1:ENST00000413559.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	2	146	2	3.86009	4.00944	4.15879	0.0128104	0.00168387	0.0770178	0.0204246
chr17	77306640	77306740	6803417	0	+	0.58	(0.523,0.58]	chr17	686717	1	SS3_PROX	SS3_PROX:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	73	2	2.19842	4.009405	5.82039	0.0551586	0.0139724	0.169218	0.0805959
chr9	129500918	129501016	4250786	0	+	0.5	(0.485,0.523]	chr9	404726	21	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	88	2	2.66706	4.009365000000001	5.35167	0.0294163	0.0131603	0.116079	0.079027
chr7	74500300	74500400	3391830	0	+	0.58	(0.523,0.58]	chr7	327343	458	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.46839	4.009255	5.55012	0.0683019	0.0217068	0.193274	0.100615
chr2	233166022	233166122	1058286	0	+	0.59	(0.58,1]	chr2	115120	12	INTRON	INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493078.1:ENST00000472517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	122	2	3.70825	4.00915	4.31005	0.0111705	6.7911e-4	0.0716525	0.0108488
chr2	43914525	43914624	1135901	0	-	0.494949	(0.485,0.523]	chr2	124282	21	EXON_MRNA	EXON_MRNA:INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000684454.1:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000682845.1:ENST00000682295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	53	2	3.17158	4.008845	4.84611	0.0608067	0.017456	0.158506	0.0928044
chrX	133649841	133649941	8112654	0	-	0.48	(0.45,0.485]	chrX	845480	529	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000692074.1:ENST00000667662.1:ENST00000666017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	88	2	2.51255	4.0083850000000005	5.50422	0.0257993	0.0197176	0.109555	0.100774
chr9	38064328	38064428	4303731	0	-	0.53	(0.523,0.58]	chr9	411616	478	INTRON	INTRON	SHB	ENSG00000107338.10	ENST00000377707.4	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	2.75313	4.008225	5.26332	0.0337698	0.0173428	0.124319	0.0927775
chr17	14330654	14330754	6683086	0	+	0.52	(0.485,0.523]	chr17	670741	253	INTRON	INTRON	HS3ST3B1	ENSG00000125430.9	ENST00000360954.3:ENST00000466596.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	86	2	2.50272	4.00781	5.5129	0.0229047	0.0193199	0.102982	0.0994526
chr11	70742184	70742284	5061703	0	-	0.54	(0.523,0.58]	chr11	492701	243	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	149	2	3.84801	4.00775	4.16749	0.00680947	0.00343547	0.0548177	0.0333396
chr16	85390235	85390335	6516973	0	+	0.62	(0.58,1]	chr16	646391	309	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.43525	4.00775	4.58025	0.0187495	0.0172566	0.0936297	0.0923809
chr7	47355617	47355717	3587347	0	-	0.33	(0.29,0.33]	chr7	346030	89	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.28897	4.0076599999999996	4.72635	0.0672935	0.0137233	0.163263	0.0814223
chr3	66037695	66037795	1815859	0	-	0.63	(0.58,1]	chr3	187319	3	SS5_PROX	SS5_PROX:INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	65	2	2.66286	4.0075	5.35214	0.0183006	0.0181452	0.0958973	0.0921579
chr12	131779125	131779224	5351501	0	+	0.606061	(0.58,1]	chr12	523423	4	INTRON	INTRON	SFSWAP	ENSG00000061936.10	ENST00000261674.9:ENST00000538548.5:ENST00000541286.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	79	2	2.22208	4.007455	5.79283	0.074035	8.4246e-4	0.171168	0.0125912
chr16	1726758	1726857	6371203	0	+	0.666667	(0.58,1]	chr16	628837	17	INTRON	INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000685565.1:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	58	2	2.50987	4.00742	5.50497	0.0865901	0.00187297	0.182221	0.0219434
chr7	2102632	2102731	3531261	0	-	0.585859	(0.58,1]	chr7	341009	135	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000444373.6:ENST00000421113.5:ENST00000464742.5:ENST00000491858.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	58	2	2.50987	4.00742	5.50497	0.0865901	0.00187297	0.182221	0.0219434
chr1	7705689	7705788	17672	0	+	0.686869	(0.58,1]	chr1	1925	276	INTRON	INTRON	CAMTA1	ENSG00000171735.19	ENST00000303635.12	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.84993	4.00723	5.16453	0.0297842	0.0249802	0.126591	0.10758
chr16	85585534	85585633	6518928	0	+	0.616162	(0.58,1]	chr16	646396	288	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.84993	4.00723	5.16453	0.0297842	0.0249802	0.126591	0.10758
chr11	70736289	70736388	5061644	0	-	0.555556	(0.523,0.58]	chr11	492701	184	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	65	2	2.81323	4.007135	5.20104	0.0650388	0.00648051	0.162385	0.0503748
chr8	141414630	141414727	3925983	0	+	0.659794	(0.58,1]	chr8	374792	7	INTRON	INTRON	PTP4A3	ENSG00000184489.13	ENST00000520105.5:ENST00000521578.6:ENST00000523147.5:ENST00000329397.6	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.38295	4.007065	5.63118	0.0730701	0.0109983	0.199669	0.0708586
chr9	134366780	134366880	4261091	0	+	0.56	(0.523,0.58]	chr9	406311	398	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	68	2	3.04682	4.0069799999999995	4.96714	0.0459721	0.0108948	0.142664	0.0706366
chr3	51982900	51983000	1776918	0	-	0.54	(0.523,0.58]	chr3	184697	3	SS5_PROX	SS5_PROX:INTRON	ABHD14B	ENSG00000114779.20	ENST00000483233.5	protein_coding	protein_coding	protein_coding	protein_coding	1	74	2	3.32604	4.006945	4.68785	0.0296013	0.0194172	0.116079	0.0994526
chr17	38728096	38728196	6729364	0	+	0.58	(0.523,0.58]	chr17	676371	26	UTR3	UTR3:EXON_MRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5	protein_coding	protein_coding	protein_coding	protein_coding	9	358	2	2.94016	4.006895	5.07363	0.00231384	0.00117005	0.0255641	0.0206836
chr10	75474809	75474909	4520906	0	+	0.49	(0.485,0.523]	chr10	432249	232	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	2.84351	4.006815	5.17012	0.038581	0.0142636	0.131324	0.0833845
chr2	168555695	168555794	945174	0	+	0.343434	(0.33,0.36]	chr2	103965	76	INTRON	INTRON	CERS6	ENSG00000172292.15	ENST00000392687.4:ENST00000305747.11	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.30428	4.00661	4.70894	0.0798152	0.014334	0.176933	0.0833845
chr1	29244499	29244598	78453	0	+	0.444444	(0.419,0.45]	chr1	8914	74	INTRON	INTRON	PTPRU	ENSG00000060656.20	ENST00000345512.7:ENST00000373779.8:ENST00000428026.6:ENST00000460170.2	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.9727	4.006565	5.04043	0.0625897	0.0303302	0.160305	0.126768
chr12	113836686	113836786	5509235	0	-	0.5	(0.485,0.523]	chr12	542458	130	INTRON	INTRON	RBM19	ENSG00000122965.11	ENST00000545145.6:ENST00000392561.7:ENST00000261741.10:ENST00000552384.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	142	2	3.37817	4.0065100000000005	4.63485	0.0271129	4.03769e-4	0.112113	0.00752123
chr17	56893113	56893209	6931129	0	-	0.552083	(0.523,0.58]	chr17	706271	5	INTRON	INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000574234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	53	2	3.229	4.00642	4.78384	0.0663135	0.0152072	0.162385	0.0861813
chr7	55444559	55444659	3591337	0	-	0.53	(0.523,0.58]	chr7	346401	80	INTRON	INTRON	VOPP1	ENSG00000154978.13	ENST00000462326.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	53	2	3.229	4.00642	4.78384	0.0663135	0.0152072	0.162385	0.0861813
chr20	41560423	41560522	7564242	0	-	0.444444	(0.419,0.45]	chr20	790090	87	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	2.8723	4.0064	5.1405	0.0550015	0.0367198	0.153337	0.139793
chr7	98122567	98122667	3423560	0	+	0.45	(0.419,0.45]	chr7	330518	149	INTRON	INTRON	LMTK2	ENSG00000164715.6	ENST00000297293.6	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.8723	4.0064	5.1405	0.0550015	0.0367198	0.153337	0.139793
chr1	52917343	52917443	485607	0	-	0.5	(0.485,0.523]	chr1	57734	4	SS5_PROX	SS5_PROX:INTRON	ECHDC2	ENSG00000121310.17	ENST00000536120.5:ENST00000371522.9:ENST00000460612.5:ENST00000371520.5:ENST00000358358.9:ENST00000476477.6:ENST00000467988.2:ENST00000488268.5:ENST00000544365.5:ENST00000495920.5:ENST00000544531.5:ENST00000480312.6:ENST00000542552.1:ENST00000474789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	68	2	3.04904	4.006325	4.96361	0.0457169	0.0112713	0.142336	0.071709
chr2	101125249	101125349	1239836	0	-	0.34	(0.33,0.36]	chr2	133786	154	INTRON	INTRON	TBC1D8	ENSG00000204634.13	ENST00000409318.2:ENST00000376840.8:ENST00000463469.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	55	2	2.7141	4.00582	5.29754	0.0468071	0.0360263	0.156817	0.127853
chr5	150508130	150508226	2565092	0	+	0.614583	(0.58,1]	chr5	254950	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDST1	ENSG00000070614.15	ENST00000522491.1:ENST00000519157.1:ENST00000524161.1:ENST00000523767.5:ENST00000518299.1:ENST00000518346.1:ENST00000261797.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	71	2	2.02776	4.00549	5.98322	0.0700362	0.00562007	0.195209	0.0493906
chr17	55321074	55321172	6757680	0	+	0.459184	(0.45,0.485]	chr17	681735	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000575307.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	967	2	3.87065	4.00535	4.14005	0.00124591	1.69661e-4	0.0214712	0.00402343
chr7	128006039	128006139	3471792	0	+	0.54	(0.523,0.58]	chr7	335434	81	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	97	2	2.15937	4.00512	5.85087	0.031163	0.0132767	0.127822	0.0787251
chr20	49147393	49147493	7572590	0	-	0.38	(0.36,0.39]	chr20	791289	111	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.67862	4.00484	5.33106	0.0511249	0.0383628	0.1648	0.131324
chr2	39114937	39115037	1127303	0	-	0.46	(0.45,0.485]	chr2	123480	166	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	100	2	1.91732	4.00431	6.0913	0.0537192	0.00998516	0.167824	0.0673647
chr6	142362371	142362471	3012482	0	+	0.44	(0.419,0.45]	chr6	294688	524	INTRON	INTRON	ADGRG6	ENSG00000112414.15	ENST00000230173.10:ENST00000367608.6:ENST00000415128.6:ENST00000296932.13:ENST00000367609.8:ENST00000541199.5:ENST00000545477.1:ENST00000435011.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	56	2	3.02039	4.00403	4.98767	0.0669167	0.0276403	0.16272	0.120359
chr19	32485302	32485401	7239743	0	+	0.464646	(0.45,0.485]	chr19	741190	32	UTR3	UTR3:EXON_MRNA	DPY19L3	ENSG00000178904.19	ENST00000392250.7:ENST00000586987.5:ENST00000342179.9:ENST00000592142.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	144	2	3.71719	4.003875	4.29056	0.0163795	0.00118176	0.0875785	0.0159198
chr12	1274958	1275058	5153137	0	+	0.44	(0.419,0.45]	chr12	500882	114	INTRON	INTRON	ERC1	ENSG00000082805.21	ENST00000543086.7:ENST00000360905.9:ENST00000690948.1:ENST00000542302.6:ENST00000546231.6:ENST00000347735.10:ENST00000397203.7:ENST00000440394.7:ENST00000545948.5:ENST00000589028.6:ENST00000355446.9:ENST00000538971.6:ENST00000588412.5:ENST00000543263.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	56	2	2.81936	4.0037	5.18804	0.051668	0.0405181	0.148503	0.145945
chr19	1172626	1172725	7305779	0	-	0.636364	(0.58,1]	chr19	753058	36	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	2.52834	4.0033650000000005	5.47839	0.0249502	0.0145198	0.114418	0.0823104
chr2	239341487	239341587	1392125	0	-	0.5	(0.485,0.523]	chr2	148752	170	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	55	2	2.53228	4.003265	5.47425	0.0614918	0.0243396	0.18013	0.106588
chr13	39046739	39046839	5576159	0	+	0.38	(0.36,0.39]	chr13	549885	3	SS3_PROX	SS3_PROX:INTRON	NHLRC3	ENSG00000188811.14	ENST00000470258.5:ENST00000379599.6:ENST00000379600.8	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	2.5517	4.00265	5.4536	0.0637554	0.0321864	0.184651	0.121593
chr18	48539931	48539987	7056662	0	+	0.660714	(0.58,1]	chr18	720281	1	SS5_PROX	SS5_PROX:INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5	protein_coding	protein_coding	protein_coding	protein_coding	4	93	2	2.60972	4.00259	5.39546	0.0168207	0.00883429	0.0884836	0.0617044
chr16	16159281	16159381	6556448	0	-	0.55	(0.523,0.58]	chr16	653067	4	SS5_PROX	SS5_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	139	2	3.7036	4.002585	4.30157	0.0156851	0.00101591	0.0852152	0.0143256
chr6	158605066	158605166	3064351	0	+	0.45	(0.419,0.45]	chr6	297718	4	SS3_PROX	SS3_PROX:INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	2.85295	4.002545	5.15214	0.0703179	0.0109324	0.168159	0.0706366
chr2	63026442	63026542	817191	0	+	0.33	(0.29,0.33]	chr2	92205	293	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000496857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	306	2	3.38512	4.002505	4.61989	0.00827707	1.13146e-4	0.0610772	0.00300243
chr6	3144966	3145065	2828588	0	+	0.565657	(0.523,0.58]	chr6	277604	41	INTRON	INTRON	BPHL	ENSG00000137274.13	ENST00000434640.5:ENST00000430655.6:ENST00000424847.6:ENST00000433912.5:ENST00000380379.10:ENST00000490918.5:ENST00000380375.4:ENST00000488487.2:ENST00000423798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	202	2	3.70327	4.00242	4.30157	0.00719177	0.00101591	0.056408	0.0143256
chr6	144331418	144331518	3020323	0	+	0.36	(0.33,0.36]	chr6	295142	4	SS5_PROX	SS5_PROX:INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1:ENST00000628146.2	protein_coding	protein_coding	protein_coding	protein_coding	3	91	2	1.89048	4.002365	6.11425	0.0722368	0.00993822	0.199502	0.0672261
chr19	933042	933142	7185176	0	+	0.72	(0.58,1]	chr19	730740	3	SS5_PROX	SS5_PROX:INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	64	2	3.26123	4.002345	4.74346	0.0257049	0.0121457	0.109543	0.0754623
chr6	82052538	82052638	3190483	0	-	0.27	[0,0.29]	chr6	309363	831	INTRON	INTRON	LINC02542	ENSG00000226453.3	ENST00000667666.1:ENST00000663543.1:ENST00000668303.1:ENST00000660637.1:ENST00000668266.1:ENST00000666226.1	lncRNA	lncRNA	lncRNA	lncRNA	2	71	2	3.00508	4.00216	4.99924	0.0347661	0.00903492	0.126529	0.0627094
chr21	42847839	42847938	7675450	0	-	0.484848	(0.45,0.485]	chr21	802287	42	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	5	286	2	3.94271	4.00206	4.06141	0.0110873	2.14125e-4	0.0712729	0.00475596
chr10	79113919	79114019	4532494	0	+	0.5	(0.485,0.523]	chr10	432420	443	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	2.70247	4.0020299999999995	5.30159	0.0759932	0.00529578	0.174411	0.044517
chr14	30573634	30573734	5769411	0	+	0.45	(0.419,0.45]	chr14	565792	124	INTRON	INTRON	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000438909.6:ENST00000544007.5:ENST00000550944.5:ENST00000552488.1:ENST00000648008.1:ENST00000553504.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	58	2	2.52086	4.00198	5.4831	0.0683849	0.0345118	0.193274	0.126025
chr9	123884717	123884817	4401441	0	-	0.44	(0.419,0.45]	chr9	419733	53	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.52086	4.00198	5.4831	0.0683849	0.0345118	0.193274	0.126025
chr1	30956879	30956978	434853	0	-	0.373737	(0.36,0.39]	chr1	51492	25	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000527498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	2.95428	4.001885	5.04949	0.0563927	0.0305895	0.154188	0.126768
chr20	62852615	62852715	7584987	0	-	0.52	(0.485,0.523]	chr20	792812	61	INTRON	INTRON	TCFL5	ENSG00000101190.13	ENST00000335351.8:ENST00000217162.5	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	2.38071	4.001855	5.623	0.0388914	0.0192139	0.142578	0.095424900000000007
chr16	75240022	75240119	6644514	0	-	0.659794	(0.58,1]	chr16	664425	15	INTRON	INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10:ENST00000569340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	91	2	1.88377	4.0012099999999995	6.11865	0.0502411	0.00429384	0.16215	0.042386
chr1	171506668	171506768	274301	0	+	0.38	(0.36,0.39]	chr1	31996	206	INTRON	INTRON	PRRC2C	ENSG00000117523.18	ENST00000647382.2:ENST00000367742.7:ENST00000476522.5:ENST00000338920.8:ENST00000467601.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	69	2	2.84128	4.001165	5.16105	0.0684007	0.00993384	0.164885	0.0666221
chr2	62817193	62817293	815072	0	+	0.41	(0.39,0.419]	chr2	92095	452	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000449820.5:ENST00000426940.5:ENST00000413434.5:ENST00000405482.5:ENST00000494958.1:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	55	2	2.90127	4.000165	5.09906	0.0535378	0.0339406	0.150319	0.133629
chrX	123638623	123638693	8098451	0	-	0.414286	(0.39,0.419]	chrX	844484	1	SS5_PROX	SS5_PROX:INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.90127	4.000165	5.09906	0.0535378	0.0339406	0.150319	0.133629
chr21	32336593	32336693	7650524	0	-	0.51	(0.485,0.523]	chr21	800169	1	SS5_PROX	SS5_PROX:INTRON	URB1	ENSG00000142207.7	ENST00000382751.4	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.7365	4.000125	5.26375	0.0423471	0.0335928	0.149195	0.124319
chr11	46720940	46721040	4852119	0	+	0.49	(0.485,0.523]	chr11	464357	1	SS5_PROX	SS5_PROX:INTRON	F2	ENSG00000180210.15	ENST00000311907.10:ENST00000530231.5:ENST00000442468.1	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.34812	4.00005	4.65198	0.0783889	0.0117752	0.175203	0.0743709
chr5	150508046	150508130	2565091	0	+	0.583333	(0.58,1]	chr5	254949	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDST1	ENSG00000070614.15	ENST00000522491.1:ENST00000519157.1:ENST00000524161.1:ENST00000523767.5:ENST00000518299.1:ENST00000518346.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	59	2	2.91446	3.9999000000000002	5.08534	0.0464528	0.00549379	0.143232	0.0454065
chr20	34075673	34075773	7460432	0	+	0.6	(0.58,1]	chr20	776618	4	SS3_PROX	SS3_PROX:INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000246194.8:ENST00000333552.9:ENST00000442805.1:ENST00000493399.1:ENST00000488227.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	65	2	2.48056	3.999345	5.51813	0.0277636	0.013519	0.12074	0.0792526
chr10	119895044	119895144	4597228	0	+	0.48	(0.45,0.485]	chr10	439450	17	INTRON	INTRON	SEC23IP	ENSG00000107651.14	ENST00000369075.8:ENST00000470478.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	3.42543	3.998965	4.5725	0.0926859	0.0103881	0.188571	0.0682598
chr2	170998123	170998223	1312534	0	-	0.36	(0.33,0.36]	chr2	140539	3	SS3_PROX	SS3_PROX:INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	54	2	2.93873	3.998965	5.0592	0.0504445	0.0305837	0.148216	0.126768
chr13	112873776	112873876	5654412	0	+	0.62	(0.58,1]	chr13	555057	1	SS5_PROX	SS5_PROX:INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000471555.5:ENST00000415301.2:ENST00000419631.1:ENST00000495930.1:ENST00000493489.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	3.30273	3.998915	4.6951	0.0521567	0.0107069	0.148503	0.0700635
chr20	63876375	63876474	7509620	0	+	0.484848	(0.45,0.485]	chr20	783600	1	INTRON	INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4	protein_coding	protein_coding	protein_coding	protein_coding	3	87	2	2.45567	3.9987649999999997	5.54186	0.0243502	0.0223895	0.108193	0.106588
chr4	6882616	6882713	2012375	0	+	0.505155	(0.485,0.523]	chr4	205353	18	UTR3	UTR3:EXON_MRNA	KIAA0232	ENSG00000170871.12	ENST00000307659.6:ENST00000425103.5	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.60361	3.9986500000000005	5.39369	0.0541523	0.0275819	0.167824	0.112782
chr5	109800697	109800797	2504496	0	+	0.25	[0,0.29]	chr5	248897	61	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5:ENST00000502261.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	81	2	2.32157	3.9986249999999997	5.67568	0.06469	0.00174548	0.162218	0.0210473
chr13	75390490	75390590	5727089	0	-	0.4	(0.39,0.419]	chr13	561722	133	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.00168	3.9985299999999997	4.99538	0.0613573	0.0279244	0.158506	0.121102
chr1	43592601	43592701	107376	0	+	0.6	(0.58,1]	chr1	13238	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	3	165	2	3.32523	3.9983950000000004	4.67156	0.0101602	2.20504e-4	0.0683801	0.00485102
chr1	12608477	12608577	402689	0	-	0.53	(0.523,0.58]	chr1	46226	123	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	52	2	3.03457	3.9982699999999998	4.96197	0.0521137	0.0231444	0.148503	0.109883
chr21	45479127	45479218	7631065	0	+	0.516484	(0.485,0.523]	chr21	797700	4	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	5	258	2	3.29865	3.9981799999999996	4.69771	0.00245888	0.00178096	0.0312881	0.0212825
chr10	75568249	75568349	4521841	0	+	0.35	(0.33,0.36]	chr10	432253	153	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	2.61341	3.998125	5.38284	0.0317908	0.0257767	0.121384	0.116361
chr17	61398736	61398836	6939787	0	-	0.54	(0.523,0.58]	chr17	707564	3	SS5_PROX	SS5_PROX:INTRON	TBX2-AS1	ENSG00000267280.6	ENST00000591313.6:ENST00000590421.1:ENST00000592009.1:ENST00000589814.5	lncRNA	lncRNA	lncRNA	lncRNA	1	52	2	2.92656	3.9980649999999995	5.06957	0.0448011	0.0289226	0.140478	0.124
chr2	73765434	73765533	1190920	0	-	0.434343	(0.419,0.45]	chr2	129094	22	INTRON	INTRON	DUSP11	ENSG00000144048.11	ENST00000696050.1:ENST00000696051.1:ENST00000272444.8:ENST00000696052.1:ENST00000696053.1:ENST00000696054.1:ENST00000696055.1:ENST00000696056.1:ENST00000480948.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	159	2	3.94666	3.99801	4.04936	0.0135082	0.0027809	0.0792526	0.0287781
chr11	70779755	70779855	5062079	0	-	0.6	(0.58,1]	chr11	492701	619	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	85	2	2.73869	3.998	5.25731	0.0310664	0.00358178	0.119778	0.0342681
chr17	29140921	29141021	6876580	0	-	0.59	(0.58,1]	chr17	698022	6	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000585573.6:ENST00000590565.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.78186	3.997815	5.21377	0.0342923	0.0230012	0.13449	0.102982
chr17	77376161	77376240	6804125	0	+	0.658228	(0.58,1]	chr17	686754	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1:ENST00000423034.6:ENST00000590059.5:ENST00000587514.1:ENST00000590586.1:ENST00000592407.1:ENST00000427674.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	80	2	2.44544	3.99761	5.54978	0.0516128	0.00165911	0.148503	0.0202545
chr12	125120549	125120648	5349507	0	+	0.525253	(0.523,0.58]	chr12	523174	8	EXON_MRNA	EXON_MRNA:INTRON	AACS	ENSG00000081760.17	ENST00000316519.11:ENST00000441247.6:ENST00000316543.14:ENST00000539251.5:ENST00000538851.5:ENST00000545511.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	65	2	2.84901	3.997515	5.14602	0.0617545	0.00734367	0.158869	0.0550721
chr8	120738694	120738794	4059290	0	-	0.35	(0.33,0.36]	chr8	386607	444	INTRON	INTRON	SNTB1	ENSG00000172164.15	ENST00000395601.7:ENST00000517992.2:ENST00000648490.1:ENST00000519177.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	55	2	3.22121	3.99738	4.77355	0.0735809	0.0171454	0.17026	0.0923809
chr1	225878629	225878719	674431	0	-	0.455556	(0.45,0.485]	chr1	79330	7	INTRON	INTRON	TMEM63A	ENSG00000196187.12	ENST00000366835.8	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.69444	3.9970850000000002	5.29973	0.0471378	0.035042	0.156915	0.12704
chr11	11877825	11877924	4799052	0	+	0.454545	(0.45,0.485]	chr11	460294	36	INTRON	INTRON	USP47	ENSG00000170242.19	ENST00000339865.9:ENST00000525257.1:ENST00000527733.7:ENST00000399455.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.69444	3.9970850000000002	5.29973	0.0471378	0.035042	0.156915	0.12704
chr3	49780077	49780177	1773980	0	-	0.35	(0.33,0.36]	chr3	183906	313	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	109	2	1.92664	3.99676	6.06688	0.104919	0.00105663	0.198927	0.0147548
chr19	3527346	3527438	7191571	0	+	0.641304	(0.58,1]	chr19	732244	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FZR1	ENSG00000105325.15	ENST00000441788.7:ENST00000652521.1:ENST00000591290.5:ENST00000313639.8:ENST00000395095.7:ENST00000592214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	2.55596	3.99674	5.43752	0.0534085	0.0156166	0.167062	0.0849828
chr10	48041829	48041928	4680784	0	-	0.545455	(0.523,0.58]	chr10	446508	24	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	1	53	2	3.27377	3.996495	4.71922	0.0721601	0.0137592	0.168159	0.0814923
chr10	130177559	130177658	4615948	0	+	0.565657	(0.523,0.58]	chr10	441040	21	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	64	2	2.7389	3.996465	5.25403	0.072318	0.00573579	0.168347	0.0467736
chr6	2209156	2209256	3084975	0	-	0.34	(0.33,0.36]	chr6	299526	333	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5	protein_coding	protein_coding	protein_coding	protein_coding	2	147	2	3.46028	3.996445	4.53261	0.025517	6.75978e-4	0.108946	0.0108163
chrX	78121343	78121442	7912466	0	+	0.353535	(0.33,0.36]	chrX	828893	28	INTRON	INTRON	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000491291.1:ENST00000373316.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	331	2	3.22121	3.99602	4.77083	0.0171454	0.00104256	0.0923809	0.0193998
chr1	213989881	213989981	339374	0	+	0.53	(0.523,0.58]	chr1	38088	1	SS5_PROX	SS5_PROX:INTRON	PROX1	ENSG00000117707.16	ENST00000471129.1:ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2:ENST00000607425.1	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	2.82229	3.99599	5.16969	0.0387762	0.014802	0.131324	0.0847481
chr16	89912400	89912494	6526299	0	+	0.574468	(0.523,0.58]	chr16	647710	4	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TCF25:ENSG00000267048:MC1R	ENSG00000141002.20:ENSG00000267048.1:ENSG00000258839.4	ENST00000640279.1:ENST00000570217.1:ENST00000539976.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay	2	71	2	2.82229	3.99599	5.16969	0.0387762	0.014802	0.131324	0.0847481
chr2	3293005	3293105	1081037	0	-	0.55	(0.523,0.58]	chr2	117633	103	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	71	2	2.82229	3.99599	5.16969	0.0387762	0.014802	0.131324	0.0847481
chr22	24103115	24103195	7695395	0	+	0.5625	(0.523,0.58]	chr22	805528	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	CABIN1:ENSG00000232545	ENSG00000099991.18:ENSG00000232545.1	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1:ENST00000444093.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	2	71	2	2.82229	3.99599	5.16969	0.0387762	0.014802	0.131324	0.0847481
chr1	12593197	12593297	402535	0	-	0.62	(0.58,1]	chr1	46222	122	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	80	2	2.00788	3.99555	5.98322	0.0498302	0.00562007	0.161202	0.0493906
chr2	121339267	121339367	1261070	0	-	0.55	(0.523,0.58]	chr2	135874	16	UTR3	UTR3:EXON_MRNA	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.08569	3.9953450000000004	4.905	0.0563605	0.020773	0.154188	0.102713
chr9	124489882	124489982	4402621	0	-	0.58	(0.523,0.58]	chr9	419805	65	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.08569	3.9953450000000004	4.905	0.0563605	0.020773	0.154188	0.102713
chr1	37551061	37551159	447713	0	-	0.428571	(0.419,0.45]	chr1	53535	17	INTRON	INTRON	SNIP1	ENSG00000163877.11	ENST00000296215.8:ENST00000468040.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	57	2	2.58571	3.99524	5.40477	0.0613171	0.0385125	0.18013	0.131324
chr17	77469354	77469454	6805072	0	+	0.56	(0.523,0.58]	chr17	686810	24	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	71	2	2.29891	3.99524	5.69157	0.0454288	0.0172851	0.154539	0.0897247
chr2	101141134	101141234	1239995	0	-	0.35	(0.33,0.36]	chr2	133786	313	INTRON	INTRON	TBC1D8	ENSG00000204634.13	ENST00000409318.2:ENST00000376840.8:ENST00000463469.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.83079	3.99505	5.15931	0.043896	0.0376711	0.140049	0.139792
chr2	235510335	235510435	1062699	0	+	0.3	(0.29,0.33]	chr2	115651	151	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	2.71956	3.99505	5.27054	0.0442313	0.0308815	0.153511	0.119556
chr17	3002852	3002951	6669886	0	+	0.575758	(0.523,0.58]	chr17	668099	41	INTRON	INTRON	RAP1GAP2	ENSG00000132359.15	ENST00000637138.1:ENST00000540393.6:ENST00000254695.13:ENST00000366401.8:ENST00000542807.1:ENST00000574515.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.86937	3.994935	5.1205	0.0416463	0.0324455	0.136301	0.130548
chr1	42850479	42850558	105844	0	+	0.291139	(0.29,0.33]	chr1	12816	4	SS3_PROX	SS3_PROX:INTRON	ZNF691	ENSG00000164011.18	ENST00000372502.5:ENST00000372508.7:ENST00000651192.1:ENST00000372507.5:ENST00000372506.5:ENST00000372504.5:ENST00000397034.3:ENST00000372503.2	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.33112	3.9949000000000003	4.65868	0.0735584	0.0124843	0.17026	0.0765738
chr11	70584829	70584929	5060121	0	-	0.48	(0.45,0.485]	chr11	492663	815	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	53	2	2.92826	3.99482	5.06138	0.0492008	0.0301249	0.146142	0.126768
chr1	62649641	62649740	500058	0	-	0.393939	(0.39,0.419]	chr1	59694	7	INTRON	INTRON	DOCK7	ENSG00000116641.18	ENST00000635253.2:ENST00000251157.10:ENST00000454575.6:ENST00000340370.10:ENST00000634264.1:ENST00000635123.1:ENST00000637208.1:ENST00000404627.3:ENST00000614472.5:ENST00000635827.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	2.7933500000000002	3.99457	5.19579	0.0469937	0.0415789	0.148959	0.143232
chr6	24224387	24224487	3108986	0	-	0.42	(0.419,0.45]	chr6	301412	189	INTRON	INTRON	DCDC2	ENSG00000146038.12	ENST00000378454.8	protein_coding	protein_coding	protein_coding	protein_coding	3	149	2	2.83597	3.9940550000000004	5.15214	0.029981	0.0109324	0.117185	0.0706366
chr20	47260293	47260393	7569917	0	-	0.59	(0.58,1]	chr20	791018	105	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	65	2	2.43115	3.9939799999999996	5.55681	0.0309513	0.0126042	0.127822	0.0761905
chr21	43919915	43920015	7624979	0	+	0.51	(0.485,0.523]	chr21	796899	31	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.97038	3.993785	5.01719	0.0480495	0.0267011	0.144601	0.118343
chr17	77482733	77482833	6805209	0	+	0.67	(0.58,1]	chr17	686820	5	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	50	2	2.63525	3.993695	5.35214	0.0459151	0.0181452	0.154743	0.0921579
chrX	120612563	120612663	7946190	0	+	0.44	(0.419,0.45]	chrX	831419	4	UTR3	UTR3:EXON_MRNA	MCTS1	ENSG00000232119.8	ENST00000371317.10	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.11129	3.9936350000000003	4.87598	0.0768574	0.023073	0.174882	0.109758
chr10	75764803	75764903	4523813	0	+	0.48	(0.45,0.485]	chr10	432277	212	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	86	2	2.27019	3.9933899999999998	5.71659	0.0334092	0.018513	0.133139	0.0928429
chr1	155975006	155975105	599931	0	-	0.484848	(0.45,0.485]	chr1	70603	28	INTRON	INTRON	ARHGEF2	ENSG00000116584.22	ENST00000313695.11:ENST00000361247.9:ENST00000477754.2:ENST00000673475.1:ENST00000462460.6:ENST00000313667.8:ENST00000471589.5:ENST00000476273.1:ENST00000497907.5:ENST00000465079.1:ENST00000495070.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	53	2	3.03233	3.993065	4.9538	0.0569772	0.0244076	0.154343	0.113311
chr7	47357310	47357409	3587364	0	-	0.454545	(0.45,0.485]	chr7	346030	106	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.03233	3.993065	4.9538	0.0569772	0.0244076	0.154343	0.113311
chr7	36270019	36270119	3346156	0	+	0.42	(0.419,0.45]	chr7	323698	306	INTRON	INTRON	EEPD1	ENSG00000122547.11	ENST00000242108.9:ENST00000534978.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.7072600000000002	3.9929699999999997	5.27868	0.0496323	0.0457732	0.160725	0.142336
chr1	44245157	44245256	459624	0	-	0.585859	(0.58,1]	chr1	55307	27	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	3.03676	3.9927900000000003	4.94882	0.0354433	0.0198789	0.127188	0.100864
chr10	97759489	97759583	4564390	0	+	0.595745	(0.58,1]	chr10	435506	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ZFYVE27	ENSG00000155256.18	ENST00000337540.11:ENST00000370613.7:ENST00000370610.7:ENST00000357540.8:ENST00000393677.8:ENST00000423811.3:ENST00000684270.1:ENST00000359980.5:ENST00000477521.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	3.03676	3.9927900000000003	4.94882	0.0354433	0.0198789	0.127188	0.100864
chr2	111420909	111421009	1252845	0	-	0.69	(0.58,1]	chr2	134896	426	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1	lncRNA	lncRNA	lncRNA	lncRNA	1	48	2	3.03676	3.9927900000000003	4.94882	0.0354433	0.0198789	0.127188	0.100864
chr2	235866975	235867074	1066282	0	+	0.585859	(0.58,1]	chr2	115724	139	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	3.03676	3.9927900000000003	4.94882	0.0354433	0.0198789	0.127188	0.100864
chr20	36856482	36856581	7557066	0	-	0.636364	(0.58,1]	chr20	789155	167	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.03676	3.9927900000000003	4.94882	0.0354433	0.0198789	0.127188	0.100864
chr6	2113371	2113471	3084013	0	-	0.5	(0.485,0.523]	chr6	299503	701	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.91537	3.99268	5.06999	0.0445854	0.0298565	0.140478	0.126732
chr2	238451062	238451161	1074196	0	+	0.494949	(0.485,0.523]	chr2	116452	47	UTR3	UTR3:EXON_MRNA:INTRON	ASB1	ENSG00000065802.12	ENST00000264607.9:ENST00000481566.1:ENST00000473306.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	70	2	2.51105	3.99265	5.47425	0.029737800000000002	0.0243396	0.126591	0.106588
chrX	1398424	1398524	7830145	0	+	0.66	(0.58,1]	chrX	822056	2	SS3_PROX	SS3_PROX:INTRON	LINC00106	ENSG00000236871.7	ENST00000434938.7:ENST00000430235.7	lncRNA	lncRNA	lncRNA	lncRNA	5	101	2	1.6956	3.9923699999999998	6.28914	0.0628207	0.00303562	0.18231	0.0350226
chr10	79166727	79166827	4533024	0	+	0.59	(0.58,1]	chr10	432438	42	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.16566	3.99214	4.81862	0.0304114	0.0102696	0.11845	0.0678072
chr6	126051624	126051723	3003333	0	+	0.484848	(0.45,0.485]	chr6	293806	104	INTRON	INTRON	TRMT11	ENSG00000066651.20	ENST00000648977.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	65	2	2.69512	3.99179	5.28846	0.0794176	0.00612862	0.176565	0.0489549
chr17	15466360	15466459	6860098	0	-	0.535354	(0.523,0.58]	chr17	695067	129	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	223	2	3.83031	3.991785	4.15326	0.00699158	5.59415e-4	0.0555241	0.00944901
chr20	38426592	38426681	7561091	0	-	0.550562	(0.523,0.58]	chr20	789769	2	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000671309.1:ENST00000669405.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	188	2	3.76107	3.99149	4.22191	0.0141879	3.46341e-4	0.0816012	0.00673458
chr13	97241331	97241431	5630994	0	+	0.38	(0.36,0.39]	chr13	553173	184	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	3.09749	3.991245	4.885	0.0697729	0.023009	0.167185	0.109581
chr12	23831784	23831884	5387339	0	-	0.39	(0.36,0.39]	chr12	528175	688	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000537393.5:ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	58	2	3.42171	3.991235	4.56076	0.103289	0.0115651	0.197541	0.0732257
chr17	72556227	72556327	6963873	0	-	0.38	(0.36,0.39]	chr17	710389	218	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	58	2	3.42171	3.991235	4.56076	0.103289	0.0115651	0.197541	0.0732257
chr3	120079173	120079272	1886972	0	-	0.555556	(0.523,0.58]	chr3	191436	45	INTRON	INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000650344.2:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000677128.1:ENST00000677530.1:ENST00000677034.1:ENST00000679131.1:ENST00000676743.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	139	2	3.8163299999999998	3.99098	4.16563	0.012872	0.00147865	0.0772995	0.0186157
chr11	68350621	68350720	4882464	0	+	0.626263	(0.58,1]	chr11	470548	20	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	200	2	3.27136	3.99092	4.7104799999999996	0.00202817	0.00136852	0.0232814	0.0226011
chr17	51013831	51013931	6928130	0	-	0.39	(0.36,0.39]	chr17	705984	2	SS5_PROX	SS5_PROX:INTRON	SPAG9	ENSG00000008294.22	ENST00000262013.12:ENST00000510283.5:ENST00000505279.5:ENST00000357122.8:ENST00000514613.5:ENST00000505173.5:ENST00000513547.5:ENST00000511795.1:ENST00000576492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	161	2	3.80233	3.990875	4.17942	0.00827071	0.00480386	0.0610772	0.0416515
chr17	315635	315735	6821432	0	-	0.57	(0.523,0.58]	chr17	689582	91	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	261	2	3.98059	3.99083	4.00107	0.00423488	6.64412e-4	0.0422099	0.0106995
chr3	32273305	32273405	1436053	0	+	0.36	(0.33,0.36]	chr3	153202	338	INTRON	INTRON	CMTM8	ENSG00000170293.9	ENST00000458535.6:ENST00000307526.4	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.08687	3.990775	4.89468	0.0629186	0.0227116	0.160778	0.108285
chr1	214005970	214006069	339538	0	+	0.313131	(0.29,0.33]	chr1	38103	3	INTRON	INTRON	PROX1	ENSG00000117707.16	ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2	protein_coding	protein_coding	protein_coding	protein_coding	2	144	2	3.20247	3.9906	4.77873	0.0346416	2.78268e-4	0.126432	0.00577243
chr17	17828875	17828974	6865812	0	-	0.535354	(0.523,0.58]	chr17	695923	49	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	4	126	2	2.03716	3.990525	5.94389	0.0736343	0.0010207	0.17037	0.0143498
chr9	111544265	111544364	4218107	0	+	0.383838	(0.36,0.39]	chr9	400116	12	UTR3	UTR3:EXON_MRNA:INTRON	ZNF483	ENSG00000173258.13	ENST00000358151.8:ENST00000309235.6	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	2.66658	3.990495	5.31441	0.086575	0.00715023	0.182221	0.0541241
chr6	45333251	45333350	3143267	0	-	0.353535	(0.33,0.36]	chr6	306719	99	INTRON	INTRON	SUPT3H	ENSG00000196284.17	ENST00000475057.5:ENST00000371459.6:ENST00000371460.5:ENST00000459689.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	102	2	2.33386	3.9904400000000004	5.64702	0.0231949	0.0212683	0.110085	0.0996805
chr11	70796343	70796443	5062245	0	-	0.58	(0.523,0.58]	chr11	492701	785	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	55	2	2.46839	3.99043	5.51247	0.0683019	0.0230387	0.193274	0.102982
chr3	51663121	51663220	1472171	0	+	0.535354	(0.523,0.58]	chr3	157987	8	CDS	CDS:EXON_MRNA:SS5_PROX:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000487093.5:ENST00000432863.1:ENST00000461680.1:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	55	2	2.46839	3.99043	5.51247	0.0683019	0.0230387	0.193274	0.102982
chr2	232899277	232899376	1383831	0	-	0.555556	(0.523,0.58]	chr2	147952	40	INTRON	INTRON	NGEF	ENSG00000066248.15	ENST00000264051.8:ENST00000373552.8:ENST00000416114.3:ENST00000420650.2:ENST00000409079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	3.13506	3.9903750000000002	4.84569	0.0610722	0.0186841	0.158506	0.0976296
chr7	47357608	47357708	3587367	0	-	0.57	(0.523,0.58]	chr7	346030	109	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	3	84	2	2.1913299999999998	3.990285	5.78924	0.0378186	0.0147166	0.140551	0.0826843
chr11	70766466	70766565	5061946	0	-	0.343434	(0.33,0.36]	chr11	492701	486	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.77362	3.9902450000000003	5.20687	0.041944	0.041040600000000003	0.149108	0.136289
chr16	81646673	81646771	6509766	0	+	0.357143	(0.33,0.36]	chr16	645932	5	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8:ENST00000564666.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.77362	3.9902450000000003	5.20687	0.041944	0.041040600000000003	0.149108	0.136289
chr11	64306314	64306403	4868816	0	+	0.730337	(0.58,1]	chr11	467348	2	UTR5	UTR5:EXON_MRNA:INTRON	ESRRA	ENSG00000173153.17	ENST00000406310.6:ENST00000000442.11:ENST00000677967.1:ENST00000539594.5:ENST00000405666.5	protein_coding	protein_coding	protein_coding	protein_coding	3	161	2	3.81127	3.9900849999999997	4.1689	0.00440581	7.94461e-4	0.0430291	0.0120803
chr1	17590373	17590472	54083	0	+	0.575758	(0.523,0.58]	chr1	5465	15	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5	protein_coding	protein_coding	protein_coding	protein_coding	2	167	2	3.44013	3.99007	4.54001	0.00938609	0.00336149	0.064735	0.0370375
chr9	124494342	124494441	4402668	0	-	0.545455	(0.523,0.58]	chr9	419817	8	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	2.57767	3.98996	5.40225	0.090356	0.00404292	0.186369	0.0371291
chr17	57407039	57407139	6761279	0	+	0.49	(0.485,0.523]	chr17	682123	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	52	2	3.07448	3.9899500000000003	4.90542	0.0561086	0.0214987	0.154188	0.10537
chr10	131919884	131919984	4616215	0	+	0.57	(0.523,0.58]	chr10	441069	69	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	2.80981	3.98975	5.16969	0.0387762	0.0364868	0.139793	0.131324
chr14	68951736	68951836	5999871	0	-	0.56	(0.523,0.58]	chr14	588759	43	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6:ENST00000683261.1:ENST00000553370.5:ENST00000682602.1:ENST00000556571.1:ENST00000553659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	141	2	3.93759	3.98963	4.04167	0.0103671	0.00206682	0.0686683	0.0235758
chr19	8240988	8241063	7200292	0	+	0.706667	(0.58,1]	chr19	734192	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559490.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	58	2	2.83384	3.9894049999999996	5.14497	0.0529065	0.00474658	0.14912	0.0413976
chr14	36303796	36303895	5961904	0	-	0.414141	(0.39,0.419]	chr14	584420	26	INTRON	INTRON	MBIP	ENSG00000151332.20	ENST00000416007.9:ENST00000318473.11:ENST00000359527.11:ENST00000604768.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	55	2	2.7362	3.98901	5.24182	0.0461646	0.0441194	0.155334	0.140174
chr20	381245	381330	7414311	0	+	0.658824	(0.58,1]	chr20	772271	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TRIB3	ENSG00000101255.12	ENST00000615226.4:ENST00000217233.9:ENST00000449710.5:ENST00000422053.3	protein_coding	protein_coding	protein_coding	protein_coding	4	90	2	2.45956	3.9888450000000004	5.51813	0.013519	0.0130665	0.0792526	0.078517
chr1	14942623	14942723	43833	0	+	0.57	(0.523,0.58]	chr1	4384	122	INTRON	INTRON	KAZN	ENSG00000189337.17	ENST00000636203.1:ENST00000376030.7:ENST00000491547.1:ENST00000503743.5:ENST00000361144.9:ENST00000400798.6:ENST00000376028.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	64	2	2.77655	3.9887949999999996	5.20104	0.0685533	0.00648051	0.165066	0.0503748
chr20	47259895	47259994	7569913	0	-	0.555556	(0.523,0.58]	chr20	791018	101	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.54344	3.9887750000000004	5.43411	0.0599121	0.026041	0.177269	0.109673
chr7	47472610	47472710	3588534	0	-	0.56	(0.523,0.58]	chr7	346123	195	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.54344	3.9887750000000004	5.43411	0.0599121	0.026041	0.177269	0.109673
chr6	158026967	158027066	3059762	0	+	0.585859	(0.58,1]	chr6	297373	88	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	2	78	2	2.22208	3.98857	5.75506	0.074035	9.38062e-4	0.171168	0.0135546
chr14	54574309	54574409	5819516	0	+	0.42	(0.419,0.45]	chr14	569049	58	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	76	2	2.21736	3.9885550000000003	5.75975	0.058705	0.0231013	0.176098	0.102982
chr13	29548871	29548970	5677505	0	-	0.444444	(0.419,0.45]	chr13	557653	123	INTRON	INTRON	SLC7A1	ENSG00000139514.13	ENST00000380752.10:ENST00000450494.1	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	3.35398	3.988355	4.62273	0.103601	0.0139289	0.197541	0.0824192
chrX	20136220	20136305	7994170	0	-	0.458824	(0.45,0.485]	chrX	836220	2	SS3_PROX	SS3_PROX:INTRON	EIF1AX	ENSG00000173674.11	ENST00000379607.10:ENST00000379593.1	protein_coding	protein_coding	protein_coding	protein_coding	2	143	2	3.77245	3.98826	4.20407	0.0149038	0.00149224	0.0834418	0.0187474
chr9	87633246	87633346	4176783	0	+	0.39	(0.36,0.39]	chr9	397147	277	INTRON	INTRON	DAPK1	ENSG00000196730.13	ENST00000358077.9:ENST00000469640.6:ENST00000472284.5:ENST00000469067.5:ENST00000408954.8:ENST00000622514.4:ENST00000496522.5:ENST00000472344.1:ENST00000491893.5:ENST00000489291.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	57	2	2.48379	3.988015	5.49224	0.0714535	0.0304242	0.198579	0.11845
chr9	129610572	129610671	4250936	0	+	0.717172	(0.58,1]	chr9	404743	10	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	2	121	2	3.8171	3.98717	4.15724	0.0090206	0.00107173	0.0637469	0.0148869
chr17	66513164	66513264	6785537	0	+	0.38	(0.36,0.39]	chr17	684238	165	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	80	2	3.08865	3.9868249999999996	4.885	0.0697729	0.00934528	0.167185	0.0646152
chr20	32476825	32476924	7543636	0	-	0.616162	(0.58,1]	chr20	787372	17	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	63	2	3.23007	3.986765	4.74346	0.0271644	0.0121457	0.112113	0.0754623
chr17	7111157	7111256	6847745	0	-	0.40404	(0.39,0.419]	chr17	693423	19	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	150	2	3.58573	3.986715	4.3877	0.0226583	0.00109743	0.102982	0.0151321
chr10	79164830	79164930	4533005	0	+	0.62	(0.58,1]	chr10	432438	23	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	122	2	3.89863	3.986465	4.0743	0.00766639	0.00136577	0.0583292	0.0176851
chr15	50470344	50470442	6103456	0	+	0.408163	(0.39,0.419]	chr15	601052	34	INTRON	INTRON	USP8	ENSG00000138592.14	ENST00000396444.7:ENST00000425032.7:ENST00000307179.9:ENST00000559329.5:ENST00000560730.5:ENST00000625664.2:ENST00000561330.1:ENST00000560527.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay:processed_transcript	1	67	2	2.6589	3.9863750000000002	5.31385	0.0879325	0.0071966	0.183764	0.0543014
chr3	78982315	78982415	1837329	0	-	0.41	(0.39,0.419]	chr3	188611	430	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	2.6589	3.9863750000000002	5.31385	0.0879325	0.0071966	0.183764	0.0543014
chr19	44947022	44947112	7269162	0	+	0.533333	(0.523,0.58]	chr19	746444	6	INTRON	INTRON	APOC4-APOC2:APOC2	ENSG00000224916.9:ENSG00000234906.11	ENST00000585685.5:ENST00000589057.5:ENST00000592257.5:ENST00000252490.7:ENST00000591597.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	65	2	2.88392	3.98637	5.08882	0.0586821	0.00834774	0.155604	0.0598672
chr14	68974664	68974764	6000103	0	-	0.46	(0.45,0.485]	chr14	588770	4	SS3_PROX	SS3_PROX:INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000683261.1:ENST00000553370.5:ENST00000682602.1:ENST00000556571.1:ENST00000553659.1:ENST00000556203.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	72	2	2.28891	3.9861050000000002	5.6833	0.0479351	0.0195193	0.159092	0.0955413
chr16	16333884	16333984	6408912	0	+	0.64	(0.58,1]	chr16	633527	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000183889	ENSG00000183889.12	ENST00000537112.5:ENST00000381497.6:ENST00000538085.5:ENST00000534258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	57	2	2.56085	3.985895	5.41094	0.0803939	0.00240622	0.177452	0.0261006
chr17	81231297	81231397	6983575	0	-	0.65	(0.58,1]	chr17	713418	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TEPSIN	ENSG00000167302.11	ENST00000300714.7:ENST00000637944.2:ENST00000573295.5:ENST00000576090.5:ENST00000571115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	2.56085	3.985895	5.41094	0.0803939	0.00240622	0.177452	0.0261006
chr2	239344185	239344285	1392152	0	-	0.49	(0.485,0.523]	chr2	148752	197	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	89	2	2.43796	3.98552	5.53308	0.062523	0.00304306	0.160305	0.0306636
chr12	108645307	108645407	5492566	0	-	0.42	(0.419,0.45]	chr12	540315	3	UTR3	UTR3:EXON_MRNA	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6	protein_coding	protein_coding	protein_coding	protein_coding	3	90	2	2.27509	3.985245	5.6954	0.0362019	0.0254103	0.139793	0.108573
chr3	157154862	157154960	1949258	0	-	0.27551	[0,0.29]	chr3	198146	3	INTRON	INTRON	CCNL1	ENSG00000163660.12	ENST00000461804.5:ENST00000295926.8:ENST00000631619.1:ENST00000475298.5:ENST00000470121.5:ENST00000476367.5:ENST00000477127.5:ENST00000478454.5:ENST00000479596.5:ENST00000465947.5:ENST00000467081.1:ENST00000464575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	169	2	3.86377	3.98456	4.10535	0.00533848	8.81595e-4	0.048014	0.0129974
chr9	14612668	14612768	4278226	0	-	0.41	(0.39,0.419]	chr9	408733	17	UTR3	UTR3:EXON_MRNA	ZDHHC21	ENSG00000175893.12	ENST00000380916.9	protein_coding	protein_coding	protein_coding	protein_coding	3	91	2	2.55645	3.984495	5.41254	0.0347088	0.019458	0.12648	0.099646
chr12	45983589	45983689	5418499	0	-	0.32	(0.29,0.33]	chr12	530454	75	INTRON	INTRON	SCAF11	ENSG00000139218.18	ENST00000369367.8:ENST00000547018.5:ENST00000266589.10:ENST00000395454.6:ENST00000395453.2:ENST00000474828.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay	1	52	2	2.84122	3.98446	5.1277	0.0382902	0.0350501	0.137151	0.131324
chr13	113506359	113506459	5658340	0	+	0.64	(0.58,1]	chr13	555703	4	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000462877.5	protein_coding	protein_coding	protein_coding	protein_coding	2	124	2	3.95573	3.984305	4.01288	0.00608214	0.00191878	0.0515813	0.0223755
chr1	12586833	12586933	402471	0	-	0.54	(0.523,0.58]	chr1	46222	58	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	143	2	3.93421	3.9841	4.03399	0.00870536	0.00274644	0.0626162	0.028553
chr15	65368213	65368313	6303650	0	-	0.57	(0.523,0.58]	chr15	621389	120	INTRON	INTRON	IGDCC3	ENSG00000174498.14	ENST00000327987.9	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	2.9514	3.9840850000000003	5.01677	0.0482765	0.0109262	0.144601	0.0706366
chr1	89909119	89909219	181582	0	+	0.39	(0.36,0.39]	chr1	19585	621	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.26869	3.984005	4.69932	0.0877431	0.016118	0.183437	0.0897679
chr14	23093644	23093744	5939169	0	-	0.39	(0.36,0.39]	chr14	582243	1	SS3_PROX	SS3_PROX:INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000262710.5:ENST00000457657.5:ENST00000555053.5	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.14223	3.983975	4.82572	0.0751666	0.0209989	0.172839	0.103249
chr20	25493896	25493995	7539892	0	-	0.50505	(0.485,0.523]	chr20	787018	20	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5:ENST00000461642.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	185	2	3.9062	3.983895	4.06159	0.0109268	5.7307e-4	0.0708179	0.0096139
chr15	59369813	59369912	6282592	0	-	0.484848	(0.45,0.485]	chr15	619101	101	INTRON	INTRON	MYO1E	ENSG00000157483.9	ENST00000288235.9:ENST00000558571.1:ENST00000558646.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	64	2	2.49062	3.9835499999999997	5.47648	0.104221	0.0039628	0.19835	0.0368027
chr5	133999699	133999798	2764116	0	-	0.464646	(0.45,0.485]	chr5	270978	63	INTRON	INTRON	VDAC1	ENSG00000213585.11	ENST00000265333.8:ENST00000395044.7:ENST00000395047.6:ENST00000425992.2:ENST00000466080.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	3.12941	3.98348	4.83755	0.06646	0.0199365	0.162385	0.100864
chr22	19423021	19423121	7763486	0	-	0.53	(0.523,0.58]	chr22	813787	119	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	137	2	3.58132	3.98344	4.38556	0.0193579	8.02365e-4	0.0954964	0.0121806
chr15	77284857	77284957	6334210	0	-	0.5	(0.485,0.523]	chr15	624492	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PEAK1	ENSG00000173517.11	ENST00000560626.6:ENST00000682557.1:ENST00000558305.5:ENST00000564328.5:ENST00000567808.5:ENST00000567337.5:ENST00000569819.5:ENST00000569159.1:ENST00000569692.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.53228	3.983405	5.43453	0.0614918	0.0258944	0.18013	0.109555
chr15	68808875	68808975	6312042	0	-	0.53	(0.523,0.58]	chr15	622245	66	INTRON	INTRON	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6:ENST00000267918.9:ENST00000560303.1:ENST00000495420.5:ENST00000495764.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	3.18279	3.9833149999999997	4.78384	0.0663135	0.0168396	0.162385	0.0919482
chr16	18844631	18844730	6560196	0	-	0.313131	(0.29,0.33]	chr16	654007	18	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000563448.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	62	2	2.52708	3.9833100000000004	5.43954	0.0944237	0.00401582	0.188571	0.0371286
chr12	15750228	15750327	5380102	0	-	0.363636	(0.36,0.39]	chr12	527513	221	INTRON	INTRON	EPS8	ENSG00000151491.14	ENST00000281172.10:ENST00000543523.5:ENST00000543468.5:ENST00000644374.1:ENST00000646918.1:ENST00000645775.1:ENST00000642939.1:ENST00000646828.1:ENST00000647224.1:ENST00000642278.1:ENST00000646123.1:ENST00000647087.1:ENST00000536956.5:ENST00000535752.5:ENST00000536793.5:ENST00000543363.5:ENST00000544064.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	91	2	2.12903	3.983255	5.83748	0.105094	0.00213426	0.19924	0.0240825
chr10	79224772	79224872	4533609	0	+	0.54	(0.523,0.58]	chr10	432457	81	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.61478	3.98301	5.35124	0.052707	0.0295772	0.167062	0.116079
chr11	70740685	70740785	5061688	0	-	0.58	(0.523,0.58]	chr11	492701	228	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	2.61478	3.98301	5.35124	0.052707	0.0295772	0.167062	0.116079
chr19	38668936	38669035	7258053	0	+	0.535354	(0.523,0.58]	chr19	743980	203	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	53	2	2.61478	3.98301	5.35124	0.052707	0.0295772	0.167062	0.116079
chr14	19093914	19094013	5754279	0	+	0.535354	(0.523,0.58]	chr14	564239	1	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000619938.1:ENST00000644980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	63	2	2.66054	3.982845	5.30515	0.0806884	0.00509102	0.177452	0.0433513
chr17	80839095	80839194	6811857	0	+	0.585859	(0.58,1]	chr17	687873	7	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000544334.6:ENST00000575542.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	3.20215	3.982495	4.76284	0.0471737	0.0136092	0.143232	0.0811697
chr12	132954945	132955044	5542081	0	-	0.535354	(0.523,0.58]	chr12	547064	63	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	52	2	2.74768	3.982475	5.21727	0.0411359	0.0361597	0.147756	0.127853
chrX	48940125	48940224	8040876	0	-	0.535354	(0.523,0.58]	chrX	838808	34	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.74768	3.982475	5.21727	0.0411359	0.0361597	0.147756	0.127853
chr1	55058826	55058905	132594	0	+	0.620253	(0.58,1]	chr1	16380	2	SS5_PROX	SS5_PROX:INTRON	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1:ENST00000673913.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	2.84993	3.9817400000000003	5.11355	0.0297842	0.0271806	0.126591	0.112113
chr19	1165800	1165900	7305710	0	-	0.61	(0.58,1]	chr19	753054	108	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5:ENST00000587655.2	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.84993	3.9817400000000003	5.11355	0.0297842	0.0271806	0.126591	0.112113
chrX	316713	316813	7964863	0	-	0.62	(0.58,1]	chrX	834137	4	SS5_PROX	SS5_PROX:INTRON	GTPBP6	ENSG00000178605.13	ENST00000326153.9	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.84993	3.9817400000000003	5.11355	0.0297842	0.0271806	0.126591	0.112113
chr7	129614418	129614518	3478124	0	+	0.25	[0,0.29]	chr7	336188	22	INTRON	INTRON	NRF1	ENSG00000106459.15	ENST00000393232.6:ENST00000477428.5:ENST00000454688.5:ENST00000223190.8:ENST00000311967.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	67	2	2.61776	3.9816200000000004	5.34548	0.0224516	0.0197148	0.108193	0.0958249
chr17	43544065	43544165	6909609	0	-	0.46	(0.45,0.485]	chr17	703276	1	SS3_PROX	SS3_PROX:INTRON	ETV4	ENSG00000175832.13	ENST00000538265.5:ENST00000319349.10:ENST00000393664.6:ENST00000545954.5:ENST00000545089.5:ENST00000591713.5:ENST00000590236.5:ENST00000585508.5:ENST00000587151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	88	2	2.61999	3.9814999999999996	5.34301	0.0328801	0.0154266	0.122593	0.0869771
chr16	50623397	50623496	6452163	0	+	0.616162	(0.58,1]	chr16	639918	13	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	11	437	2	3.36605	3.981415	4.59678	6.37051e-4	3.6922e-4	0.0148365	0.00704866
chr3	65420235	65420335	1809652	0	-	0.53	(0.523,0.58]	chr3	187193	184	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5	protein_coding	protein_coding	protein_coding	protein_coding	2	88	2	2.3839	3.98135	5.5788	0.0679164	0.00262418	0.164413	0.0278348
chr3	65420035	65420135	1809650	0	-	0.46	(0.45,0.485]	chr3	187193	182	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5	protein_coding	protein_coding	protein_coding	protein_coding	2	146	2	3.97447	3.981285	3.9881	0.0104837	0.0026335	0.0690475	0.0278798
chr17	72575963	72576063	6964071	0	-	0.48	(0.45,0.485]	chr17	710393	12	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1	lncRNA	lncRNA	lncRNA	lncRNA	2	74	2	2.95398	3.9812849999999997	5.00859	0.052901	0.0115759	0.14912	0.0732749
chr8	144741282	144741382	4101096	0	-	0.47	(0.45,0.485]	chr8	390597	175	INTRON	INTRON	ZNF251	ENSG00000198169.9	ENST00000524394.2:ENST00000292562.12	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	142	2	3.73584	3.9810100000000004	4.22618	0.015867	0.00140627	0.0859576	0.0180646
chr10	79221572	79221672	4533577	0	+	0.63	(0.58,1]	chr10	432457	49	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	3	166	2	3.49194	3.980975	4.47001	0.0072369	4.15967e-4	0.0565323	0.00768537
chr2	127496348	127496448	1266278	0	-	0.26	[0,0.29]	chr2	136446	2	SS3_PROX	SS3_PROX:INTRON	IWS1	ENSG00000163166.15	ENST00000295321.9	protein_coding	protein_coding	protein_coding	protein_coding	2	126	2	3.63203	3.9807449999999998	4.32946	0.0135384	8.38484e-4	0.0793234	0.0125912
chr15	34408534	34408634	6217543	0	-	0.47	(0.45,0.485]	chr15	612287	4	INTRON	INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000569781.1:ENST00000565885.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	2.57593	3.9807300000000003	5.38553	0.093234	0.00490471	0.188571	0.0422077
chr22	28504365	28504465	7780074	0	-	0.32	(0.29,0.33]	chr22	815741	614	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	2	85	2	2.19616	3.980035	5.76391	0.0868958	0.0018044	0.182479	0.0215053
chr22	17799842	17799941	7757523	0	-	0.424242	(0.419,0.45]	chr22	812998	57	INTRON	INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000580469.1:ENST00000577821.5:ENST00000579997.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	55	2	2.81936	3.9799300000000004	5.1405	0.0550015	0.0405181	0.153337	0.145945
chr11	14851484	14851583	4807114	0	+	0.373737	(0.36,0.39]	chr11	460763	71	INTRON	INTRON	PDE3B	ENSG00000152270.9	ENST00000282096.9:ENST00000455098.2	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	2.55061	3.97945	5.40829	0.10062	0.00581205	0.196131	0.0472624
chr21	44867528	44867626	7678517	0	-	0.44898	(0.419,0.45]	chr21	802773	15	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	685	2	3.96862	3.9792750000000003	3.98993	0.00272561	5.54589e-4	0.0331786	0.00943104
chr10	100970124	100970224	4569823	0	+	0.57	(0.523,0.58]	chr10	436225	2	SS5_PROX	SS5_PROX:INTRON	SEMA4G	ENSG00000095539.15	ENST00000519649.5:ENST00000521006.5:ENST00000518124.5:ENST00000518244.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	106	2	1.99165	3.979195	5.96674	0.037452	0.0109075	0.139793	0.0707085
chr14	65102339	65102428	5996370	0	-	0.696629	(0.58,1]	chr14	588124	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MAX	ENSG00000125952.20	ENST00000341653.6:ENST00000651648.1:ENST00000618858.4:ENST00000358402.8:ENST00000394606.6:ENST00000358664.9:ENST00000555932.5:ENST00000284165.10:ENST00000553928.5:ENST00000557277.5:ENST00000556892.5:ENST00000556979.5:ENST00000555667.5:ENST00000557746.5:ENST00000556443.5:ENST00000246163.2:ENST00000556702.1:ENST00000554709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	88	2	2.03303	3.979155	5.92528	0.0363214	0.0062948	0.139793	0.0523832
chr1	91734375	91734475	526292	0	-	0.54	(0.523,0.58]	chr1	61879	2	SS5_PROX	SS5_PROX:INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000468996.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	70	2	2.78812	3.978905	5.16969	0.0387762	0.0160129	0.131324	0.0894586
chr17	17826391	17826491	6865787	0	-	0.6	(0.58,1]	chr17	695923	24	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.09276	3.978835	5.86491	0.0619333	0.00707578	0.180615	0.0558168
chr21	44865651	44865733	7678497	0	-	0.52439	(0.523,0.58]	chr21	802771	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000474737.5:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	317	2	2.36236	3.97849	5.59462	0.0261999	4.01761e-4	0.117385	0.0114502
chr11	96296688	96296788	5113103	0	-	0.31	(0.29,0.33]	chr11	496566	2028	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.51537	3.97836	5.44135	0.0639396	0.0236557	0.184676	0.105002
chr17	38919974	38920074	6730081	0	+	0.52	(0.485,0.523]	chr17	676475	13	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000318008.11:ENST00000435347.7	protein_coding	protein_coding	protein_coding	protein_coding	2	137	2	3.66621	3.9782599999999997	4.29031	0.0166798	0.00107516	0.0884836	0.0148869
chr12	112426811	112426911	5331553	0	+	0.49	(0.485,0.523]	chr12	520142	73	INTRON	INTRON	PTPN11	ENSG00000179295.19	ENST00000688597.1:ENST00000692624.1:ENST00000685487.1:ENST00000690210.1:ENST00000639857.2:ENST00000392597.5:ENST00000687906.1:ENST00000351677.7:ENST00000635625.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	84	2	2.1043	3.9778000000000002	5.8513	0.0455727	0.0131886	0.154743	0.0785398
chr17	7106401	7106499	6847693	0	-	0.357143	(0.33,0.36]	chr17	693403	39	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6	protein_coding	protein_coding	protein_coding	protein_coding	3	89	2	2.57256	3.9777	5.38284	0.0317908	0.0180206	0.121384	0.0952934
chr16	58539014	58539098	6598966	0	-	0.428571	(0.419,0.45]	chr16	659986	1	SS3_PROX	SS3_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000568917.1:ENST00000563283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	153	2	3.56008	3.97765	4.39522	0.0250979	0.00115346	0.107672	0.0157112
chr16	85594425	85594525	6519017	0	+	0.52	(0.485,0.523]	chr16	646396	377	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.60361	3.97764	5.35167	0.0541523	0.0294163	0.167824	0.116079
chr19	46977591	46977691	7275349	0	+	0.56	(0.523,0.58]	chr19	747275	398	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	69	2	2.48104	3.97743	5.47382	0.0313926	0.0244797	0.127822	0.106683
chr17	64228910	64229010	6947118	0	-	0.43	(0.419,0.45]	chr17	708696	143	INTRON	INTRON	TEX2	ENSG00000136478.9	ENST00000584379.6:ENST00000258991.7:ENST00000583097.5:ENST00000583922.1:ENST00000583738.1	protein_coding	protein_coding	protein_coding	protein_coding	1	71	2	2.91455	3.9772950000000002	5.04004	0.06467	0.0137308	0.162218	0.0814223
chr16	89915640	89915736	6526334	0	+	0.677083	(0.58,1]	chr16	647720	1	INTRON	INTRON	ENSG00000267048:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000555427.1:ENST00000639847.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	3	90	2	3.19086	3.9768499999999998	4.76284	0.0471737	0.00256603	0.143232	0.0274214
chr3	71412959	71413059	1829578	0	-	0.42	(0.419,0.45]	chr3	188242	523	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000649145.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	55	2	3.02039	3.976645	4.9329	0.0716557	0.0276403	0.168159	0.120359
chr2	39007792	39007892	1126206	0	-	0.39	(0.36,0.39]	chr2	123400	2	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000685279.1:ENST00000690876.1:ENST00000692227.1:ENST00000395038.6:ENST00000691229.1:ENST00000692620.1:ENST00000689668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	67	2	2.73901	3.9765050000000004	5.214	0.0786198	0.00887999	0.175203	0.0618231
chr10	114434378	114434477	4762107	0	-	0.50505	(0.485,0.523]	chr10	455500	34	UTR3	UTR3:EXON_MRNA	ABLIM1	ENSG00000099204.21	ENST00000533213.7:ENST00000392955.7:ENST00000392952.7	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	2.70247	3.9764749999999998	5.25048	0.0759932	0.0059614	0.174411	0.0479866
chr7	47352730	47352829	3587318	0	-	0.616162	(0.58,1]	chr7	346030	60	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	8	410	2	3.49368	3.97631	4.45894	0.00351338	2.62009e-5	0.0379879	0.00101883
chr6	34909783	34909883	2900717	0	+	0.44	(0.419,0.45]	chr6	284492	198	INTRON	INTRON	ANKS1A	ENSG00000064999.15	ENST00000360359.5:ENST00000649117.1:ENST00000650178.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.1968	3.9758500000000003	4.7549	0.0888907	0.0193853	0.183874	0.0994526
chr2	134451534	134451634	898763	0	+	0.49	(0.485,0.523]	chr2	101298	28	UTR3	UTR3:EXON_MRNA	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	2	141	2	3.25002	3.97571	4.7014	0.033374	3.32408e-4	0.124113	0.00652409
chr7	92688419	92688519	3637483	0	-	0.34	(0.33,0.36]	chr7	350310	165	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000473078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	54	2	3.1778	3.975675	4.77355	0.0735809	0.0187975	0.17026	0.0980631
chr4	128858446	128858544	2132072	0	+	0.459184	(0.45,0.485]	chr4	216567	6	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	3.1756	3.975655	4.77571	0.0719884	0.0180699	0.168159	0.0953579
chr15	67066460	67066560	6139079	0	+	0.61	(0.58,1]	chr15	603929	1	SS5_PROX	SS5_PROX:INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9	protein_coding	protein_coding	protein_coding	protein_coding	3	176	2	3.25213	3.9756400000000003	4.69915	0.00405239	0.00140341	0.0371518	0.0229261
chr10	15264767	15264867	4637365	0	-	0.27	[0,0.29]	chr10	443067	95	INTRON	INTRON	FAM171A1	ENSG00000148468.17	ENST00000378116.9:ENST00000455654.1	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	2.69636	3.97555	5.25474	0.02298	0.0188129	0.102982	0.0980631
chr3	71173046	71173146	1827155	0	-	0.39	(0.36,0.39]	chr3	188150	410	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648426.1:ENST00000498215.7:ENST00000484350.5:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000468577.6:ENST00000649513.1:ENST00000649431.2:ENST00000647614.1:ENST00000649760.1:ENST00000650295.1:ENST00000648895.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	54	2	2.95428	3.9755	4.99672	0.0604395	0.0305895	0.158506	0.126768
chr3	186948156	186948255	1650452	0	+	0.606061	(0.58,1]	chr3	173621	54	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000676786.1:ENST00000463542.1:ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000468614.1:ENST00000458216.5:ENST00000430309.5:ENST00000417392.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	61	2	3.13234	3.97548	4.81862	0.0322188	0.0102696	0.121593	0.0678072
chr13	112553556	112553656	5752455	0	-	0.61	(0.58,1]	chr13	563940	1	SS5_PROX	SS5_PROX:INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000464139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	57	2	2.74846	3.975345	5.20223	0.0605281	0.00411607	0.158506	0.0374453
chr4	101317011	101317111	2292849	0	-	0.39	(0.36,0.39]	chr4	230565	758	INTRON	INTRON	PPP3CA	ENSG00000138814.17	ENST00000512215.5:ENST00000394854.8:ENST00000323055.10:ENST00000394853.8:ENST00000507176.5:ENST00000529324.5:ENST00000525819.1	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.85025	3.9753249999999998	5.1004	0.0526991	0.0373341	0.14912	0.139793
chr7	584407	584507	3523930	0	-	0.69	(0.58,1]	chr7	340378	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000400758.6:ENST00000430040.5	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.47204	3.975215	5.47839	0.0623526	0.0145198	0.181127	0.0823104
chr9	134347718	134347817	4260900	0	+	0.656566	(0.58,1]	chr9	406311	207	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	51	2	2.47204	3.975215	5.47839	0.0623526	0.0145198	0.181127	0.0823104
chr17	4852618	4852718	6672079	0	+	0.49	(0.485,0.523]	chr17	668609	186	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	66	2	2.98607	3.97484	4.96361	0.0503063	0.0112713	0.148176	0.071709
chr9	123525892	123525992	4397835	0	-	0.45	(0.419,0.45]	chr9	419652	399	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	2.58571	3.97483	5.36395	0.0613171	0.0407485	0.18013	0.135868
chr17	15519543	15519643	6860636	0	-	0.46	(0.45,0.485]	chr17	695092	25	INTRON	INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	2.69444	3.97477	5.2551	0.0471378	0.0373953	0.156915	0.130656
chr2	121340362	121340461	1261081	0	-	0.454545	(0.45,0.485]	chr2	135874	27	UTR3	UTR3:EXON_MRNA	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.69444	3.97477	5.2551	0.0471378	0.0373953	0.156915	0.130656
chr8	127848943	127849042	3918332	0	+	0.59596	(0.58,1]	chr8	374180	23	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000655594.1	lncRNA	lncRNA	lncRNA	lncRNA	3	83	2	2.94305	3.97445	5.00585	0.0323732	0.00516797	0.121593	0.0437977
chr16	22496103	22496202	6422801	0	+	0.414141	(0.39,0.419]	chr16	635376	39	INTRON	INTRON	NPIPB5	ENSG00000243716.11	ENST00000415654.5:ENST00000415833.6:ENST00000546168.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	73	2	2.41984	3.974175	5.52851	0.0393507	0.029339	0.143358	0.116079
chr20	8556724	8556823	7430835	0	+	0.363636	(0.36,0.39]	chr20	773698	1847	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	73	2	2.57496	3.974015	5.37307	0.0361409	0.0288176	0.127853	0.123783
chr6	43050682	43050774	3135536	0	-	0.521739	(0.485,0.523]	chr6	305972	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CUL7	ENSG00000044090.13	ENST00000265348.9:ENST00000690231.1:ENST00000685042.1:ENST00000689256.1:ENST00000674112.2:ENST00000674134.1:ENST00000674100.1:ENST00000686442.1:ENST00000688302.1:ENST00000673753.1:ENST00000687225.1:ENST00000688707.1:ENST00000683493.1:ENST00000683160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	76	2	3.4264	3.97391	4.52142	0.0273555	0.025039	0.119337	0.10758
chr2	239350079	239350179	1392211	0	-	0.4	(0.39,0.419]	chr2	148752	256	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	54	2	2.84832	3.97369	5.09906	0.0535378	0.0375279	0.150319	0.139823
chr6	3436696	3436795	3087862	0	-	0.484848	(0.45,0.485]	chr6	299797	40	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	54	2	2.5616	3.9733150000000004	5.38503	0.0598406	0.0308908	0.177269	0.119556
chr7	47352929	47353028	3587320	0	-	0.545455	(0.523,0.58]	chr7	346030	62	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	136	2	3.60243	3.9733	4.34417	0.0186731	9.01636e-4	0.0934313	0.0132389
chr1	3471891	3471991	5830	0	+	0.65	(0.58,1]	chr1	1235	1	SS5_PROX	SS5_PROX:INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5:ENST00000464620.1:ENST00000418137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	48	2	2.78186	3.973195	5.16453	0.0342923	0.0249802	0.13449	0.10758
chr16	75236998	75237082	6644479	0	-	0.642857	(0.58,1]	chr16	664414	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000566982.1:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10:ENST00000569340.1:ENST00000564170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	2.78186	3.973195	5.16453	0.0342923	0.0249802	0.13449	0.10758
chr17	81004809	81004909	6813310	0	+	0.62	(0.58,1]	chr17	688065	48	INTRON	INTRON	CHMP6	ENSG00000176108.9	ENST00000571457.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.78186	3.973195	5.16453	0.0342923	0.0249802	0.13449	0.10758
chr5	95960974	95961074	2731866	0	-	0.63	(0.58,1]	chr5	268268	176	INTRON	INTRON	ELL2	ENSG00000118985.16	ENST00000237853.9:ENST00000513343.1:ENST00000506628.1:ENST00000635633.1:ENST00000515020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	2.78186	3.973195	5.16453	0.0342923	0.0249802	0.13449	0.10758
chr7	105937474	105937574	3444136	0	+	0.61	(0.58,1]	chr7	333440	134	INTRON	INTRON	CDHR3	ENSG00000128536.16	ENST00000470188.5:ENST00000488386.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	48	2	2.78186	3.973195	5.16453	0.0342923	0.0249802	0.13449	0.10758
chr10	48310677	48310776	4485263	0	+	0.393939	(0.39,0.419]	chr10	428980	20	INTRON	INTRON	MAPK8	ENSG00000107643.17	ENST00000395611.7:ENST00000432379.5:ENST00000374189.6:ENST00000429041.6:ENST00000374179.8:ENST00000426557.5:ENST00000476134.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	3.18369	3.9731300000000003	4.76257	0.0822354	0.0193131	0.179396	0.0994526
chr17	7177554	7177631	6847851	0	-	0.584416	(0.58,1]	chr17	693466	4	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574388.5:ENST00000570576.1:ENST00000573596.1:ENST00000573083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	164	2	3.43352	3.9730800000000004	4.51264	0.00815854	3.64278e-4	0.0605492	0.00699922
chr12	28334043	28334143	5196034	0	+	0.38	(0.36,0.39]	chr12	505449	259	INTRON	INTRON	CCDC91	ENSG00000123106.11	ENST00000540794.5:ENST00000536154.5:ENST00000535520.5:ENST00000539107.5:ENST00000545336.5:ENST00000536442.6:ENST00000543809.5:ENST00000545737.5:ENST00000381259.5:ENST00000540401.5:ENST00000539904.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	57	2	3.38495	3.972855	4.56076	0.103289	0.0125396	0.197541	0.0765784
chr17	38726097	38726197	6729344	0	+	0.6	(0.58,1]	chr17	676371	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MLLT6	ENSG00000275023.5	ENST00000621332.5:ENST00000619356.1:ENST00000615741.1:ENST00000615441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	284	2	2.99644	3.97283	4.94922	0.00155355	8.00303e-4	0.0193429	0.016799
chr9	134368077	134368177	4261104	0	+	0.7	(0.58,1]	chr9	406311	411	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	126	2	3.82654	3.972645	4.11875	0.00489075	0.00275362	0.0457614	0.0285628
chr6	158233302	158233402	3060848	0	+	0.35	(0.33,0.36]	chr6	297572	6	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	53	2	2.93873	3.972575	5.00642	0.0542065	0.0305837	0.151733	0.126768
chr19	15321738	15321837	7342268	0	-	0.393939	(0.39,0.419]	chr19	760397	414	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	76	2	2.89662	3.972385	5.04815	0.0572698	0.0145147	0.154343	0.0836197
chr20	47257804	47257904	7569892	0	-	0.41	(0.39,0.419]	chr20	791018	80	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	66	2	2.58263	3.97209	5.36155	0.0970705	0.00648185	0.190588	0.0503748
chr16	8712236	8712336	6381512	0	+	0.29	[0,0.29]	chr16	631147	288	INTRON	INTRON	ABAT	ENSG00000183044.12	ENST00000564714.5:ENST00000268251.13:ENST00000563992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	85	2	2.78578	3.97184	5.1579	0.0269673	0.00913917	0.112113	0.0632917
chr2	19999343	19999443	1096421	0	-	0.6	(0.58,1]	chr2	119555	16	INTRON	INTRON	MATN3	ENSG00000132031.13	ENST00000407540.8:ENST00000421259.2	protein_coding	protein_coding	protein_coding	protein_coding	4	88	2	1.96033	3.971775	5.98322	0.0426346	0.00562007	0.149802	0.0493906
chr7	44455380	44455480	3584748	0	-	0.58	(0.523,0.58]	chr7	345547	273	INTRON	INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000472246.5:ENST00000464812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	51	2	2.98158	3.971775	4.96197	0.0521137	0.0258432	0.148503	0.116361
chr1	153611965	153612062	591013	0	-	0.536082	(0.523,0.58]	chr1	68765	28	INTRON	INTRON	S100A16	ENSG00000188643.11	ENST00000368706.9:ENST00000474991.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.92656	3.971665	5.01677	0.0482765	0.0289226	0.144601	0.124
chr16	81632580	81632680	6509623	0	+	0.57	(0.523,0.58]	chr16	645926	105	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.92656	3.971665	5.01677	0.0482765	0.0289226	0.144601	0.124
chr15	34408734	34408834	6217545	0	-	0.63	(0.58,1]	chr15	612287	6	INTRON	INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000569781.1:ENST00000565885.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.63525	3.9713600000000002	5.30747	0.0459151	0.0196049	0.154743	0.0955413
chr13	95148595	95148695	5742131	0	-	0.4	(0.39,0.419]	chr13	562777	3	SS5_PROX	SS5_PROX:INTRON	ABCC4	ENSG00000125257.16	ENST00000645237.2:ENST00000643051.1:ENST00000643842.1:ENST00000646439.1:ENST00000644880.1:ENST00000643816.1:ENST00000536256.3:ENST00000643556.1:ENST00000629385.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	57	2	3.38301	3.9712199999999998	4.55943	0.104562	0.0126232	0.19835	0.0768792
chr16	18845228	18845328	6560202	0	-	0.41	(0.39,0.419]	chr16	654008	4	SS5_PROX	SS5_PROX:INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000565324.5:ENST00000563448.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	54	2	3.00168	3.97114	4.9406	0.0658437	0.0279244	0.162385	0.121102
chr18	59153457	59153553	7077359	0	+	0.40625	(0.39,0.419]	chr18	721586	2	INTRON	INTRON	SEC11C	ENSG00000166562.9	ENST00000509791.7:ENST00000299714.7:ENST00000587834.6:ENST00000588875.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	54	2	3.00168	3.97114	4.9406	0.0658437	0.0279244	0.162385	0.121102
chr7	47360894	47360994	3587400	0	-	0.49	(0.485,0.523]	chr7	346030	142	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	3	83	2	2.28384	3.9708750000000004	5.65791	0.031367	0.0181582	0.127822	0.0921579
chr2	121457486	121457586	1262292	0	-	0.3	(0.29,0.33]	chr2	136047	4	SS5_PROX	SS5_PROX:INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	2.9213	3.97086	5.02042	0.0537281	0.0103902	0.150759	0.0682598
chr11	70743983	70744083	5061721	0	-	0.67	(0.58,1]	chr11	492701	261	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	3.19823	3.9708449999999997	4.74346	0.0287301	0.0121457	0.115888	0.0754623
chr4	75966022	75966122	2252773	0	-	0.44	(0.419,0.45]	chr4	227454	2	SS3_PROX	SS3_PROX:INTRON	SDAD1	ENSG00000198301.12	ENST00000395710.5:ENST00000356260.10:ENST00000395711.8:ENST00000513089.5:ENST00000507396.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	55	2	2.7072600000000002	3.9706650000000003	5.23407	0.0496323	0.0486006	0.160725	0.145074
chr5	134926657	134926757	2539853	0	+	0.48	(0.45,0.485]	chr5	252048	158	INTRON	INTRON	PCBD2	ENSG00000132570.15	ENST00000512783.5:ENST00000254908.11:ENST00000504352.1:ENST00000510013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	93	2	2.87985	3.9706149999999996	5.06138	0.0492008	0.00828821	0.146142	0.0597346
chr4	3363695	3363795	2005073	0	+	0.61	(0.58,1]	chr4	204663	203	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	119	2	3.51497	3.97053	4.42609	0.0161632	4.76485e-4	0.0872435	0.008444
chr16	89292597	89292697	6659731	0	-	0.55	(0.523,0.58]	chr16	666648	4	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	226	2	3.90397	3.97019	4.03641	0.0110124	3.01485e-4	0.0708586	0.00609379
chr11	70796043	70796143	5062242	0	-	0.58	(0.523,0.58]	chr11	492701	782	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	3.03457	3.969785	4.905	0.0563605	0.0231444	0.154188	0.109883
chr8	629137	629237	3932011	0	-	0.54	(0.523,0.58]	chr8	376005	15	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	2.86937	3.96947	5.06957	0.0448011	0.0324455	0.140478	0.130548
chrX	19718974	19719074	7991227	0	-	0.53	(0.523,0.58]	chrX	836056	116	INTRON	INTRON	SH3KBP1	ENSG00000147010.18	ENST00000397821.8:ENST00000379698.8:ENST00000379726.7:ENST00000379697.7:ENST00000432234.5:ENST00000431164.1	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.86937	3.96947	5.06957	0.0448011	0.0324455	0.140478	0.130548
chr5	119334629	119334729	2517253	0	+	0.51	(0.485,0.523]	chr5	249997	6	INTRON	INTRON	TNFAIP8	ENSG00000145779.8	ENST00000274456.6:ENST00000388882.5:ENST00000513374.1	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	2.74113	3.96931	5.19749	0.0719691	0.00672953	0.168159	0.0519464
chr6	166930943	166931043	3301786	0	-	0.43	(0.419,0.45]	chr6	319711	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000682498.1:ENST00000366855.10:ENST00000421787.5:ENST00000510083.1:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000467705.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	103	2	3.85537	3.9693050000000003	4.08324	0.0727147	0.0156849	0.199502	0.0852152
chr4	10100627	10100726	2195656	0	-	0.555556	(0.523,0.58]	chr4	222412	11	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	2.48975	3.9691	5.44845	0.101574	0.00361636	0.196431	0.0342681
chr14	89268153	89268253	6026780	0	-	0.42	(0.419,0.45]	chr14	591436	37	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	152	2	3.56008	3.96855	4.37702	0.0250979	0.00120952	0.107672	0.0162377
chr8	17765358	17765458	3946071	0	-	0.52	(0.485,0.523]	chr8	376990	68	INTRON	INTRON	MTUS1	ENSG00000129422.15	ENST00000381869.5:ENST00000693296.1:ENST00000262102.10:ENST00000523718.5:ENST00000518755.1:ENST00000518891.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	62	2	2.49197	3.9684299999999997	5.44489	0.10114	0.00377098	0.196131	0.0353672
chr19	1172825	1172924	7305781	0	-	0.636364	(0.58,1]	chr19	753058	38	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	2.37998	3.968395	5.55681	0.0345705	0.0126042	0.135397	0.0761905
chr14	24435456	24435543	5759962	0	+	0.528736	(0.523,0.58]	chr14	565629	1	EXON_MRNA	EXON_MRNA:INTRON	KHNYN	ENSG00000100441.10	ENST00000251343.9:ENST00000556842.5:ENST00000553935.6:ENST00000554268.1:ENST00000556255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	53	2	2.54344	3.968355	5.39327	0.0599121	0.0277354	0.177269	0.112851
chr3	179757178	179757272	1638068	0	+	0.574468	(0.523,0.58]	chr3	171492	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000288698:USP13	ENSG00000288698.1:ENSG00000058056.10	ENST00000680408.1:ENST00000680587.1:ENST00000263966.8:ENST00000680008.1:ENST00000496897.5:ENST00000679972.1:ENST00000497155.1:ENST00000679893.1:ENST00000679768.1:ENST00000680477.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	53	2	2.54344	3.968355	5.39327	0.0599121	0.0277354	0.177269	0.112851
chr5	56835428	56835528	2422989	0	+	0.56	(0.523,0.58]	chr5	241645	190	INTRON	INTRON	MAP3K1	ENSG00000095015.6	ENST00000399503.4	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.54344	3.968355	5.39327	0.0599121	0.0277354	0.177269	0.112851
chrX	9681549	9681648	7844626	0	+	0.515152	(0.485,0.523]	chrX	822454	248	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	2.5366	3.967645	5.39869	0.0953348	0.00421243	0.189038	0.0380601
chr5	157330241	157330341	2574137	0	+	0.4	(0.39,0.419]	chr5	255921	1	SS3_PROX	SS3_PROX:INTRON	CYFIP2	ENSG00000055163.20	ENST00000616178.4:ENST00000620254.5:ENST00000435847.6:ENST00000522463.5:ENST00000521420.5:ENST00000618329.4:ENST00000520424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	66	2	2.62127	3.96756	5.31385	0.0923527	0.0071966	0.188571	0.0543014
chr12	6339196	6339295	5362099	0	-	0.474747	(0.45,0.485]	chr12	525042	46	INTRON	INTRON	TNFRSF1A	ENSG00000067182.8	ENST00000534885.5:ENST00000162749.7:ENST00000543995.5:ENST00000540022.5:ENST00000539372.5:ENST00000366159.8:ENST00000543048.5:ENST00000440083.6:ENST00000536194.1:ENST00000535958.1:ENST00000538363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	52	2	2.87326	3.96732	5.06138	0.0492008	0.033576	0.146142	0.133139
chr15	101406055	101406154	6363612	0	-	0.484848	(0.45,0.485]	chr15	627258	71	INTRON	INTRON	PCSK6	ENSG00000140479.18	ENST00000398185.6:ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000611967.4:ENST00000615296.4:ENST00000559417.2:ENST00000331826.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	52	2	2.87326	3.96732	5.06138	0.0492008	0.033576	0.146142	0.133139
chr8	127136546	127136646	4066339	0	-	0.46	(0.45,0.485]	chr8	387347	192	INTRON	INTRON	CASC19	ENSG00000254166.3	ENST00000642100.1:ENST00000641912.1:ENST00000641919.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	52	2	2.87326	3.96732	5.06138	0.0492008	0.033576	0.146142	0.133139
chr3	9469566	9469665	1402854	0	+	0.353535	(0.33,0.36]	chr3	150230	11	EXON_MRNA	EXON_MRNA:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000406341.5:ENST00000670063.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000466242.5:ENST00000682236.1:ENST00000421188.1:ENST00000687014.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	53	2	3.03916	3.96692	4.89468	0.0629186	0.0250322	0.160778	0.114418
chr16	50526445	50526541	6451198	0	+	0.59375	(0.58,1]	chr16	639835	1	EXON_LNCRNA	EXON_LNCRNA	ENSG00000260573	ENSG00000260573.4	ENST00000646992.1	lncRNA	lncRNA	lncRNA	lncRNA	3	78	2	2.00788	3.96658	5.92528	0.0498302	0.0062948	0.161202	0.0523832
chr11	61684395	61684495	4861843	0	+	0.5	(0.485,0.523]	chr11	465896	35	INTRON	INTRON	DAGLA	ENSG00000134780.10	ENST00000257215.10:ENST00000540717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	2.97038	3.966385	4.96239	0.0518747	0.0267011	0.148503	0.118343
chr3	134205871	134205971	1919882	0	-	0.5	(0.485,0.523]	chr3	195284	26	INTRON	INTRON	RYK	ENSG00000163785.13	ENST00000623711.4:ENST00000460933.5:ENST00000620660.4:ENST00000464879.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	51	2	2.97038	3.966385	4.96239	0.0518747	0.0267011	0.148503	0.118343
chr13	112552659	112552759	5752446	0	-	0.59	(0.58,1]	chr13	563939	41	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000464139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	120	2	3.85844	3.96637	4.0743	0.00830865	0.00136577	0.061139	0.0176851
chr5	75413690	75413790	2693326	0	-	0.4	(0.39,0.419]	chr5	266090	22	INTRON	INTRON	CERT1	ENSG00000113163.19	ENST00000646172.1:ENST00000644912.1:ENST00000644072.2:ENST00000644445.1:ENST00000261415.12:ENST00000642809.1:ENST00000647512.2:ENST00000380494.10:ENST00000642556.1:ENST00000646713.1:ENST00000644516.1:ENST00000645866.1:ENST00000645483.1:ENST00000642225.1:ENST00000405807.10:ENST00000642488.1:ENST00000643780.2:ENST00000646511.1:ENST00000643158.1:ENST00000644377.1:ENST00000646302.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	54	2	2.7362	3.965995	5.19579	0.0469937	0.0461646	0.155334	0.143232
chr11	70656931	70657031	5060844	0	-	0.5	(0.485,0.523]	chr11	492672	21	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	54	2	2.45723	3.96574	5.47425	0.0700289	0.0243396	0.195209	0.106588
chr6	53540800	53540900	3150836	0	-	0.46	(0.45,0.485]	chr6	307405	170	INTRON	INTRON	GCLC	ENSG00000001084.13	ENST00000650454.1:ENST00000616923.5:ENST00000643939.1:ENST00000513939.6:ENST00000504525.1:ENST00000514004.5:ENST00000505197.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	3.22036	3.9657299999999998	4.7111	0.0781398	0.016408	0.175203	0.0911382
chr3	48408928	48409028	1766475	0	-	0.55	(0.523,0.58]	chr3	182157	2	SS5_PROX	SS5_PROX:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000485535.5:ENST00000456774.5:ENST00000497627.1:ENST00000483676.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	51	2	3.08569	3.9656900000000004	4.84569	0.0610722	0.020773	0.158506	0.102713
chr14	104873655	104873755	5925948	0	+	0.63	(0.58,1]	chr14	579942	47	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	3.10233	3.96493	4.82753	0.0427798	0.00607723	0.13762	0.0487928
chr16	50526345	50526445	6451197	0	+	0.47	(0.45,0.485]	chr16	639834	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000260573	ENSG00000260573.4	ENST00000646992.1	lncRNA	lncRNA	lncRNA	lncRNA	3	85	2	2.05731	3.96487	5.87243	0.0514401	0.0143887	0.165698	0.0821732
chr3	4340245	4340345	1676553	0	-	0.47	(0.45,0.485]	chr3	175311	2711	INTRON	INTRON	SUMF1	ENSG00000144455.14	ENST00000448413.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	52	2	3.03233	3.96459	4.89685	0.0614781	0.0244076	0.158506	0.113311
chr17	76546611	76546710	6977071	0	-	0.50505	(0.485,0.523]	chr17	712268	3	INTRON	INTRON	CYGB:ENSG00000267546	ENSG00000161544.10:ENSG00000267546.2	ENST00000589145.1:ENST00000589963.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	53	2	3.34812	3.9645600000000005	4.581	0.085711	0.0117752	0.181766	0.0743709
chr17	46302437	46302537	6743020	0	+	0.42	(0.419,0.45]	chr17	679150	4	SS3_PROX	SS3_PROX:INTRON	LRRC37A	ENSG00000176681.14	ENST00000496930.5:ENST00000393465.7:ENST00000320254.5	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.23773	3.96403	4.69033	0.0958674	0.0178095	0.189038	0.0943752
chrX	1398724	1398824	7830148	0	+	0.65	(0.58,1]	chrX	822057	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	LINC00106	ENSG00000236871.7	ENST00000434938.7:ENST00000430235.7	lncRNA	lncRNA	lncRNA	lncRNA	2	126	2	3.79235	3.964005	4.13566	0.00472191	0.00302484	0.0449204	0.0305643
chr4	10101418	10101517	2195664	0	-	0.353535	(0.33,0.36]	chr4	222412	19	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.58715	3.963985	5.34082	0.0587055	0.0338211	0.176098	0.124319
chr18	69485828	69485928	7084031	0	+	0.33	(0.29,0.33]	chr18	722115	142	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.20079	3.96357	4.72635	0.0672935	0.01667	0.163263	0.0917029
chr16	89303618	89303716	6659845	0	-	0.591837	(0.58,1]	chr16	666658	16	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	508	2	3.3345	3.963545	4.59259	0.00412877	1.12644e-5	0.0415618	5.59324e-4
chr5	861550	861650	2607970	0	-	0.66	(0.58,1]	chr5	259417	106	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	1	48	2	3.30273	3.96338	4.62403	0.0578275	0.0107069	0.154343	0.0700635
chr16	68291661	68291761	6476639	0	+	0.42	(0.419,0.45]	chr16	643234	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SLC7A6	ENSG00000103064.15	ENST00000618043.4:ENST00000648130.1:ENST00000219343.11:ENST00000379152.7:ENST00000566454.5:ENST00000567346.5:ENST00000563208.1:ENST00000562863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	68	2	2.72124	3.96316	5.20508	0.0837482	0.00979452	0.181508	0.0664239
chr1	43538577	43538677	106820	0	+	0.52	(0.485,0.523]	chr1	13174	3	SS5_PROX	SS5_PROX:INTRON	PTPRF	ENSG00000142949.17	ENST00000496043.5:ENST00000481019.5:ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	2.53228	3.962985	5.39369	0.0614918	0.0275819	0.18013	0.112782
chr4	3364194	3364293	2005078	0	+	0.585859	(0.58,1]	chr4	204663	208	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	2.97713	3.962975	4.94882	0.0354433	0.0226795	0.127188	0.108193
chr7	217058	217158	3305825	0	+	0.68	(0.58,1]	chr7	320161	77	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.97713	3.962975	4.94882	0.0354433	0.0226795	0.127188	0.108193
chr12	62692848	62692946	5444968	0	-	0.438776	(0.419,0.45]	chr12	535880	27	INTRON	INTRON	PPM1H	ENSG00000111110.12	ENST00000228705.7:ENST00000551214.5:ENST00000551519.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	56	2	2.52086	3.962815	5.40477	0.0683849	0.0385125	0.193274	0.131324
chr10	79115717	79115816	4532512	0	+	0.646465	(0.58,1]	chr10	432420	461	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	3.26123	3.962695	4.66416	0.0257049	0.0144381	0.109543	0.0833845
chr5	7883377	7883477	2381594	0	+	0.46	(0.45,0.485]	chr5	238117	1	SS5_PROX	SS5_PROX:INTRON	MTRR	ENSG00000124275.15	ENST00000264668.6:ENST00000513439.5:ENST00000511461.5:ENST00000440940.7:ENST00000510525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	143	2	3.28219	3.96243	4.64267	0.0334207	4.4327e-4	0.12421	0.00804207
chr10	70306099	70306198	4706078	0	-	0.494949	(0.485,0.523]	chr10	448514	42	INTRON	INTRON	LRRC20	ENSG00000172731.15	ENST00000395010.5:ENST00000395011.5:ENST00000373224.5:ENST00000355790.8:ENST00000446961.4:ENST00000357631.6:ENST00000358141.6	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	2.62192	3.961755	5.30159	0.0849566	0.00529578	0.181766	0.044517
chr16	89301736	89301836	6659826	0	-	0.55	(0.523,0.58]	chr16	666657	1	SS3_PROX	SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	188	2	3.60243	3.96163	4.32083	0.0186731	2.5723e-4	0.0934313	0.00544708
chr7	47475707	47475807	3588565	0	-	0.48	(0.45,0.485]	chr7	346123	226	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	3	191	2	3.08125	3.96163	4.84201	0.0234805	2.49386e-4	0.104385	0.00530842
chr9	14842960	14843060	4280147	0	-	0.41	(0.39,0.419]	chr9	408984	3	SS3_PROX	SS3_PROX:INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	88	2	2.00601	3.961465	5.91692	0.059719	0.0162442	0.177269	0.0873195
chr19	33421935	33422035	7365057	0	-	0.56	(0.523,0.58]	chr19	763415	79	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000590731.6:ENST00000609145.5:ENST00000588719.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	63	2	2.77655	3.961285	5.14602	0.0685533	0.00734367	0.165066	0.0550721
chrX	133923154	133923254	8115399	0	-	0.43	(0.419,0.45]	chrX	845529	882	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	336	2	3.72697	3.961215	4.19546	0.00950348	3.12007e-4	0.0657113	0.00625316
chr10	131927369	131927469	4616290	0	+	0.67	(0.58,1]	chr10	441069	144	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	2.56085	3.96119	5.36153	0.0803939	0.00273899	0.177452	0.028553
chr15	34408634	34408734	6217544	0	-	0.66	(0.58,1]	chr15	612287	5	INTRON	INTRON	GOLGA8A	ENSG00000175265.18	ENST00000359187.5:ENST00000569781.1:ENST00000565885.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	2.56085	3.96119	5.36153	0.0803939	0.00273899	0.177452	0.028553
chr6	24225487	24225587	3108997	0	-	0.4	(0.39,0.419]	chr6	301412	200	INTRON	INTRON	DCDC2	ENSG00000146038.12	ENST00000378454.8	protein_coding	protein_coding	protein_coding	protein_coding	1	79	2	3.35302	3.960865	4.56871	0.032645	0.0315133	0.127889	0.122541
chr8	133269214	133269313	4084011	0	-	0.575758	(0.523,0.58]	chr8	388324	17	INTRON	INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000517745.2:ENST00000676005.1:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674536.1:ENST00000675357.1:ENST00000675600.1:ENST00000674902.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	186	2	3.48535	3.96066	4.43597	0.0313935	0.00736671	0.127822	0.0571679
chr16	57378048	57378146	6466045	0	+	0.5	(0.485,0.523]	chr16	641366	12	UTR5	UTR5:EXON_MRNA:INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1:ENST00000565912.1	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	2.77877	3.9606250000000003	5.14248	0.0682166	0.00761903	0.164526	0.0561937
chr1	31414242	31414331	80066	0	+	0.606742	(0.58,1]	chr1	9151	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SERINC2	ENSG00000168528.12	ENST00000373710.5:ENST00000536859.5:ENST00000487207.5:ENST00000373709.8:ENST00000536384.2:ENST00000491976.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	241	2	2.38295	3.960475	5.538	0.0730701	2.04141e-4	0.199669	0.00807039
chr1	228151101	228151200	358097	0	+	0.666667	(0.58,1]	chr1	40434	7	INTRON	INTRON	GJC2	ENSG00000198835.4	ENST00000366714.3	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.50987	3.9604049999999997	5.41094	0.0865901	0.00240622	0.182221	0.0261006
chr1	228151398	228151497	358100	0	+	0.626263	(0.58,1]	chr1	40434	10	INTRON	INTRON	GJC2	ENSG00000198835.4	ENST00000366714.3	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.91493	3.96039	5.00585	0.0323732	0.0259506	0.121593	0.116361
chr10	103715783	103715883	4757258	0	-	0.59	(0.58,1]	chr10	454791	223	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.91493	3.96039	5.00585	0.0323732	0.0259506	0.121593	0.116361
chr7	207702	207801	3305731	0	+	0.686869	(0.58,1]	chr7	320155	103	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6:ENST00000477004.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.91493	3.96039	5.00585	0.0323732	0.0259506	0.121593	0.116361
chr16	81552279	81552379	6508816	0	+	0.49	(0.485,0.523]	chr16	645911	564	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.07448	3.9602950000000003	4.84611	0.0608067	0.0214987	0.158506	0.10537
chr12	9085133	9085232	5367859	0	-	0.333333	(0.33,0.36]	chr12	526327	46	INTRON	INTRON	A2M	ENSG00000175899.15	ENST00000543436.2:ENST00000318602.12:ENST00000545828.1:ENST00000462568.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	87	2	3.42477	3.9602450000000005	4.49572	0.103264	0.00390283	0.197541	0.0364654
chr14	39085061	39085161	5967665	0	-	0.47	(0.45,0.485]	chr14	584638	86	INTRON	INTRON	SEC23A	ENSG00000100934.15	ENST00000307712.11:ENST00000537403.5:ENST00000545328.6	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	2.90749	3.96008	5.01267	0.0588897	0.011221	0.15607	0.071709
chr2	19997853	19997952	1096406	0	-	0.40404	(0.39,0.419]	chr2	119555	1	INTRON	INTRON	MATN3	ENSG00000132031.13	ENST00000407540.8:ENST00000421259.2	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.09555	3.95997	4.82439	0.0762206	0.0231436	0.174484	0.109883
chr3	98746378	98746477	1516350	0	+	0.40404	(0.39,0.419]	chr3	161540	124	INTRON	INTRON	ST3GAL6	ENSG00000064225.13	ENST00000489112.5:ENST00000265261.11:ENST00000460774.5:ENST00000469105.5:ENST00000466482.5:ENST00000462152.5:ENST00000486249.5:ENST00000497008.5:ENST00000486334.6:ENST00000394162.5:ENST00000613264.5:ENST00000480133.1:ENST00000465004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	54	2	3.09555	3.95997	4.82439	0.0762206	0.0231436	0.174484	0.109883
chr16	75095497	75095597	6492880	0	+	0.5	(0.485,0.523]	chr16	645361	1	SS3_ADJ	SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1:ENST00000579084.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.79862	3.95977	5.12092	0.0414411	0.0375966	0.139924	0.136301
chr20	34567245	34567345	7547100	0	-	0.51	(0.485,0.523]	chr20	787854	59	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.79862	3.95977	5.12092	0.0414411	0.0375966	0.139924	0.136301
chr7	212868	212968	3305783	0	+	0.5	(0.485,0.523]	chr7	320161	35	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.79862	3.95977	5.12092	0.0414411	0.0375966	0.139924	0.136301
chr16	81540082	81540182	6508694	0	+	0.48	(0.45,0.485]	chr16	645911	442	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	2.53391	3.95972	5.38553	0.0985287	0.00490471	0.193064	0.0422077
chr7	98992527	98992627	3426309	0	+	0.47	(0.45,0.485]	chr7	331001	3	SS5_PROX	SS5_PROX:INTRON	TRRAP	ENSG00000196367.14	ENST00000355540.7:ENST00000359863.8:ENST00000628380.2:ENST00000456197.2:ENST00000446306.7:ENST00000360902.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	63	2	2.53391	3.95972	5.38553	0.0985287	0.00490471	0.193064	0.0422077
chr10	63357769	63357869	4698997	0	-	0.44	(0.419,0.45]	chr10	447731	887	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	67	2	2.61392	3.9596999999999998	5.30548	0.0961463	0.00792071	0.189169	0.057762
chr3	13026493	13026593	1689401	0	-	0.48	(0.45,0.485]	chr3	176542	40	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.08169	3.95962	4.83755	0.06646	0.0220375	0.162385	0.10754
chr2	54556694	54556794	799280	0	+	0.39	(0.36,0.39]	chr2	90794	281	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7	protein_coding	protein_coding	protein_coding	protein_coding	2	75	2	2.86942	3.9594549999999997	5.04949	0.0563927	0.0153841	0.154188	0.0869771
chr19	1415873	1415940	7187506	0	+	0.58209	(0.58,1]	chr19	731287	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5:ENST00000587833.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	2.70505	3.95941	5.21377	0.0230012	0.0165599	0.102982	0.0917029
chr2	53964952	53965052	1147669	0	-	0.3	(0.29,0.33]	chr2	125423	153	INTRON	INTRON	PSME4	ENSG00000068878.15	ENST00000404125.6:ENST00000389993.7:ENST00000481518.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	53	2	3.33112	3.9594050000000003	4.58769	0.0806047	0.0124843	0.177452	0.0765738
chr3	42646960	42647059	1452461	0	+	0.414141	(0.39,0.419]	chr3	155084	11	UTR3	UTR3:EXON_MRNA	NKTR	ENSG00000114857.19	ENST00000429888.5:ENST00000232978.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	155	2	3.8551	3.959375	4.06365	0.0102519	0.00424346	0.0684871	0.0383199
chr1	67409508	67409608	505875	0	-	0.31	(0.29,0.33]	chr1	60117	18	UTR3	UTR3:EXON_MRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.0064	3.959285	4.91217	0.0522244	0.0251671	0.148503	0.114704
chr12	121220136	121220234	5341270	0	+	0.408163	(0.39,0.419]	chr12	521600	25	INTRON	INTRON	P2RX4	ENSG00000135124.16	ENST00000359949.11:ENST00000543430.5:ENST00000337233.9:ENST00000543984.5:ENST00000499638.6:ENST00000543318.5:ENST00000540930.5:ENST00000538701.5:ENST00000542067.5:ENST00000541187.5:ENST00000538417.2:ENST00000314442.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	54	2	2.67669	3.9592549999999997	5.24182	0.051368	0.0441194	0.165482	0.140174
chr2	239341787	239341887	1392128	0	-	0.47	(0.45,0.485]	chr2	148752	173	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	52	2	2.75654	3.959015	5.16149	0.0427653	0.0419966	0.149115	0.13762
chr19	957541	957641	7185423	0	+	0.63	(0.58,1]	chr19	730746	1	SS3_PROX	SS3_PROX:INTRON	ARID3A:ENSG00000275162	ENSG00000116017.11:ENSG00000275162.1	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3:ENST00000613285.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	1	59	2	3.02751	3.9587899999999996	4.89007	0.0385189	0.00872525	0.131324	0.0612699
chr7	74475940	74476040	3391586	0	+	0.56	(0.523,0.58]	chr7	327343	214	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.74768	3.958685	5.16969	0.0411359	0.0387762	0.147756	0.131324
chr19	943217	943316	7185278	0	+	0.494949	(0.485,0.523]	chr19	730741	101	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	65	2	2.95352	3.958565	4.96361	0.0528263	0.0112713	0.14912	0.071709
chr13	113521630	113521729	5658495	0	+	0.40404	(0.39,0.419]	chr13	555716	5	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	147	2	3.60514	3.958315	4.31149	0.0219642	0.00134114	0.101375	0.0174212
chr11	96076495	96076595	5110900	0	-	0.55	(0.523,0.58]	chr11	496560	844	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6:ENST00000618849.1	protein_coding	protein_coding	protein_coding	protein_coding	3	246	2	3.62427	3.958305	4.29234	0.0060311	0.00229541	0.0484641	0.0302623
chr14	19096304	19096403	5754303	0	+	0.585859	(0.58,1]	chr14	564239	25	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000619938.1:ENST00000644980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	9	384	2	3.31257	3.957995	4.60342	6.2734e-4	5.7274e-4	0.0147128	0.00960934
chr1	17588479	17588579	54064	0	+	0.62	(0.58,1]	chr1	5463	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5	protein_coding	protein_coding	protein_coding	protein_coding	4	218	2	3.88969	3.95794	4.02619	0.00311807	4.06616e-4	0.0356998	0.00755833
chr16	89298070	89298170	6659786	0	-	0.6	(0.58,1]	chr16	666648	59	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	56	2	2.45703	3.9578749999999996	5.45872	0.0933945	0.00211999	0.188571	0.0239744
chr14	23521202	23521302	5757166	0	+	0.6	(0.58,1]	chr14	564963	64	INTRON	INTRON	ZFHX2-AS1	ENSG00000157306.14	ENST00000556354.5:ENST00000553985.1:ENST00000554403.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	56	2	2.6577	3.9575050000000003	5.25731	0.0695799	0.00358178	0.167028	0.0342681
chr19	2338335	2338430	7189510	0	+	0.673684	(0.58,1]	chr19	731795	4	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000593243.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	56	2	2.6577	3.9575050000000003	5.25731	0.0695799	0.00358178	0.167028	0.0342681
chr2	235999410	235999510	1067610	0	+	0.51	(0.485,0.523]	chr2	115748	304	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5:ENST00000418654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	184	2	3.63577	3.9573	4.27883	0.00550526	0.00191195	0.0489901	0.0223437
chr6	166954596	166954694	3302039	0	-	0.295918	(0.29,0.33]	chr6	319750	22	EXON_MRNA	EXON_MRNA:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000358165.7:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	266	2	3.08912	3.95728	4.82544	0.0156279	0.00886888	0.0877396	0.0634853
chr5	302877	302977	2377951	0	+	0.59	(0.58,1]	chr5	237467	261	INTRON	INTRON	PDCD6	ENSG00000249915.9	ENST00000614778.4:ENST00000618970.4:ENST00000513582.5:ENST00000264933.9:ENST00000505221.5:ENST00000507528.5:ENST00000505526.1:ENST00000507473.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	118	2	3.73069	3.957275	4.18386	0.0106925	9.90719e-4	0.0701355	0.0141138
chr2	134193740	134193840	896168	0	+	0.5	(0.485,0.523]	chr2	101196	662	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	3.26255	3.957265	4.65198	0.0783889	0.0142848	0.175203	0.0833845
chr4	153488584	153488684	2151104	0	+	0.52	(0.485,0.523]	chr4	217962	143	INTRON	INTRON	TMEM131L	ENSG00000121210.16	ENST00000409663.7:ENST00000445960.5:ENST00000409959.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	3.26255	3.957265	4.65198	0.0783889	0.0142848	0.175203	0.0833845
chr2	62895162	62895262	815862	0	+	0.39	(0.36,0.39]	chr2	92141	135	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	2.42193	3.957085	5.49224	0.0391325	0.0304242	0.142703	0.11845
chr17	38729595	38729695	6729379	0	+	0.52	(0.485,0.523]	chr17	676371	41	UTR3	UTR3:EXON_MRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5	protein_coding	protein_coding	protein_coding	protein_coding	4	99	2	2.52039	3.95704	5.39369	0.0275819	0.0137225	0.112782	0.0814223
chr20	10664214	10664314	7525328	0	-	0.48	(0.45,0.485]	chr20	785557	2	SS3_PROX	SS3_PROX:INTRON	JAG1	ENSG00000101384.12	ENST00000254958.10	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	2.57593	3.9568700000000003	5.33781	0.093234	0.0054758	0.188571	0.0454065
chr13	98538496	98538596	5747906	0	-	0.5	(0.485,0.523]	chr13	563357	166	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	2.66276	3.95662	5.25048	0.0803133	0.0059614	0.177452	0.0479866
chr14	103638682	103638782	5924204	0	+	0.5	(0.485,0.523]	chr14	579587	88	INTRON	INTRON	KLC1	ENSG00000126214.22	ENST00000557172.5:ENST00000348520.10:ENST00000380038.7:ENST00000334553.11:ENST00000555467.1:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	62	2	2.66276	3.95662	5.25048	0.0803133	0.0059614	0.177452	0.0479866
chr7	128006139	128006238	3471793	0	+	0.494949	(0.485,0.523]	chr7	335434	82	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	135	2	3.66621	3.9563050000000004	4.2464	0.0166798	0.00121376	0.0884836	0.0162693
chr19	4543096	4543180	7313580	0	-	0.702381	(0.58,1]	chr19	754809	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SEMA6B	ENSG00000167680.17	ENST00000676793.1:ENST00000586582.6:ENST00000677828.1:ENST00000586965.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	194	2	3.0476	3.956255	4.86491	0.011719	1.1798e-4	0.0737098	0.00311056
chr16	89297374	89297473	6659779	0	-	0.525253	(0.523,0.58]	chr16	666648	52	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	90	2	2.89558	3.956175	5.01677	0.0482765	0.00739534	0.144601	0.0553519
chr16	78441851	78441951	6498830	0	+	0.28	[0,0.29]	chr16	645683	87	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000684632.1:ENST00000627394.3:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6:ENST00000408984.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	66	2	2.65759	3.956165	5.25474	0.02298	0.0205378	0.102982	0.102713
chr16	81627789	81627889	6509575	0	+	0.62	(0.58,1]	chr16	645926	57	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	2	119	2	3.83792	3.95611	4.0743	0.00865536	0.00136577	0.0623824	0.0176851
chr10	35465641	35465741	4476970	0	+	0.5	(0.485,0.523]	chr10	428126	98	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	2.88614	3.955935	5.02573	0.0583792	0.00985879	0.155373	0.0664239
chr11	43644722	43644819	4845737	0	+	0.515464	(0.485,0.523]	chr11	463489	6	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000283341	ENSG00000283341.3	ENST00000532864.6:ENST00000685461.1:ENST00000684922.1:ENST00000693635.1:ENST00000684996.1:ENST00000686251.1:ENST00000688643.1:ENST00000688149.1:ENST00000693220.1:ENST00000636894.1:ENST00000664853.1:ENST00000529261.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	70	2	2.1863	3.9558	5.7253	0.0567965	0.0162644	0.172995	0.0873195
chr3	142061937	142062036	1931439	0	-	0.434343	(0.419,0.45]	chr3	196276	74	INTRON	INTRON	TFDP2	ENSG00000114126.18	ENST00000489671.6:ENST00000467072.5:ENST00000487734.5:ENST00000464782.5:ENST00000488107.6:ENST00000475734.5:ENST00000494358.5:ENST00000467634.1:ENST00000495095.6:ENST00000476617.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	73	2	2.46706	3.955765	5.44447	0.0367089	0.0364384	0.139793	0.128173
chr1	31019497	31019597	435497	0	-	0.33	(0.29,0.33]	chr1	51564	120	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000373741.8:ENST00000373742.6:ENST00000526215.5:ENST00000525948.5:ENST00000480602.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	3.05751	3.9551800000000004	4.85285	0.0567079	0.0226356	0.154343	0.108193
chr2	15452822	15452922	1092869	0	-	0.31	(0.29,0.33]	chr2	119027	247	INTRON	INTRON	NBAS	ENSG00000151779.13	ENST00000281513.10	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.05751	3.9551800000000004	4.85285	0.0567079	0.0226356	0.154343	0.108193
chr10	18560365	18560465	4642332	0	-	0.42	(0.419,0.45]	chr10	443321	80	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	91	2	3.61678	3.9551	4.29342	0.0526662	0.0229694	0.167062	0.102982
chr4	3367484	3367584	2005111	0	+	0.58	(0.523,0.58]	chr4	204663	241	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	136	2	3.35121	3.954785	4.55836	0.0284134	4.89235e-4	0.114906	0.0086136
chr3	114972865	114972965	1881540	0	-	0.33	(0.29,0.33]	chr3	190959	681	INTRON	INTRON	ZBTB20	ENSG00000181722.17	ENST00000675478.1:ENST00000357258.8:ENST00000462705.5:ENST00000463890.5:ENST00000492665.5:ENST00000488663.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.78168	3.9546900000000003	5.1277	0.0393252	0.0382902	0.143321	0.131324
chr1	2230722	2230820	4517	0	+	0.367347	(0.36,0.39]	chr1	1044	6	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.34723	3.953995	4.56076	0.103289	0.0136148	0.197541	0.0811697
chr16	3879131	3879231	6539928	0	-	0.38	(0.36,0.39]	chr16	650426	278	INTRON	INTRON	CREBBP	ENSG00000005339.15	ENST00000262367.10:ENST00000382070.7	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.34723	3.953995	4.56076	0.103289	0.0136148	0.197541	0.0811697
chr2	175599372	175599472	959340	0	+	0.45	(0.419,0.45]	chr2	105443	44	INTRON	INTRON	ENSG00000289349	ENSG00000289349.1	ENST00000692740.1:ENST00000685522.1	lncRNA	lncRNA	lncRNA	lncRNA	1	68	2	2.75532	3.95373	5.15214	0.0800906	0.0109324	0.177372	0.0706366
chr7	24712255	24712353	3553650	0	-	0.520408	(0.485,0.523]	chr7	343335	15	INTRON	INTRON	GSDME	ENSG00000105928.16	ENST00000342947.9:ENST00000645220.1:ENST00000409970.6:ENST00000419307.6:ENST00000446822.6:ENST00000415480.5:ENST00000414428.2:ENST00000559637.6:ENST00000411476.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.7365	3.95331	5.17012	0.0423471	0.038581	0.149195	0.131324
chr6	1681725	1681825	3079687	0	-	0.54	(0.523,0.58]	chr6	299464	14	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000533279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	53	2	3.4003	3.9531150000000004	4.50593	0.094303	0.0103016	0.188571	0.0678983
chr7	47523837	47523936	3589051	0	-	0.59596	(0.58,1]	chr7	346138	165	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.7038	3.953015	5.20223	0.0648563	0.00411607	0.162218	0.0374453
chr1	100929038	100929138	198079	0	+	0.42	(0.419,0.45]	chr1	21484	68	INTRON	INTRON	SLC30A7	ENSG00000162695.12	ENST00000370112.8:ENST00000357650.9	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.9727	3.9528	4.9329	0.0716557	0.0303302	0.168159	0.126768
chr15	90038824	90038923	6183933	0	+	0.444444	(0.419,0.45]	chr15	608320	316	INTRON	INTRON	ZNF710	ENSG00000140548.10	ENST00000268154.9:ENST00000559419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.9727	3.9528	4.9329	0.0716557	0.0303302	0.168159	0.126768
chr1	183473220	183473310	301138	0	+	0.544444	(0.523,0.58]	chr1	34237	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMG7	ENSG00000116698.22	ENST00000440812.7:ENST00000367537.7:ENST00000688051.1:ENST00000685780.1:ENST00000508461.5:ENST00000347615.6:ENST00000419169.5:ENST00000444547.6:ENST00000507469.5:ENST00000515829.6:ENST00000367538.1:ENST00000502375.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	68	2	2.39285	3.9526600000000003	5.51247	0.0376513	0.0230387	0.140049	0.102982
chr4	3367085	3367185	2005107	0	+	0.63	(0.58,1]	chr4	204663	237	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	118	2	3.43525	3.95263	4.47001	0.0187495	4.15967e-4	0.0936297	0.00768537
chr2	70033125	70033224	1178305	0	-	0.494949	(0.485,0.523]	chr2	128194	11	EXON_LNCRNA	EXON_LNCRNA:INTRON	PCBP1-AS1	ENSG00000179818.16	ENST00000419542.5:ENST00000682294.1:ENST00000684630.1:ENST00000630975.3:ENST00000435880.6:ENST00000629339.3:ENST00000667874.1:ENST00000628659.2:ENST00000628308.2:ENST00000626515.2:ENST00000625447.2:ENST00000628305.2:ENST00000625625.2:ENST00000625864.2:ENST00000630522.2:ENST00000628837.2:ENST00000627325.2:ENST00000629084.2:ENST00000629603.2:ENST00000625215.2:ENST00000627189.2:ENST00000629836.2:ENST00000626898.2:ENST00000628883.2:ENST00000629533.2:ENST00000627181.2:ENST00000630214.2:ENST00000627918.2:ENST00000628374.2:ENST00000627327.2:ENST00000626495.2:ENST00000629605.2:ENST00000626370.2:ENST00000626842.2:ENST00000630457.2:ENST00000629184.2:ENST00000628551.2:ENST00000630746.2:ENST00000627398.2:ENST00000457076.5:ENST00000625783.2:ENST00000625490.2:ENST00000627050.2:ENST00000630759.2:ENST00000628667.2:ENST00000626632.2:ENST00000631110.2:ENST00000626609.2:ENST00000629506.2:ENST00000630985.2:ENST00000413436.5:ENST00000628147.2:ENST00000631107.2:ENST00000629415.2:ENST00000418564.5:ENST00000630280.2:ENST00000415222.5:ENST00000628322.2:ENST00000626440.2:ENST00000665708.1:ENST00000655086.1:ENST00000420309.6:ENST00000627487.3:ENST00000670036.1:ENST00000655096.1:ENST00000685127.1:ENST00000684907.1:ENST00000685079.1:ENST00000687866.1:ENST00000692564.1:ENST00000686517.1:ENST00000689138.1:ENST00000688056.1:ENST00000594376.6:ENST00000692333.1:ENST00000688045.1:ENST00000657291.1:ENST00000691987.1:ENST00000664483.1:ENST00000601431.6:ENST00000685803.1:ENST00000690200.1:ENST00000686800.1:ENST00000684857.1:ENST00000627037.2:ENST00000629212.2:ENST00000688473.1:ENST00000456161.5:ENST00000627074.2:ENST00000419963.5:ENST00000625227.2:ENST00000599673.5:ENST00000629407.2:ENST00000612430.3:ENST00000418308.5:ENST00000630283.2:ENST00000629178.2:ENST00000627542.2:ENST00000626574.2:ENST00000596028.5:ENST00000629485.2:ENST00000630685.2:ENST00000452431.5:ENST00000629374.2:ENST00000423402.5:ENST00000411429.5:ENST00000629188.2:ENST00000434781.5:ENST00000626162.2:ENST00000654878.1:ENST00000659586.1:ENST00000457770.6:ENST00000415742.5:ENST00000627540.2:ENST00000628263.2:ENST00000657575.2:ENST00000689275.1:ENST00000687961.1:ENST00000693279.1:ENST00000416395.6:ENST00000692733.1:ENST00000654336.1:ENST00000686055.1:ENST00000626509.3:ENST00000425601.6:ENST00000666075.1:ENST00000653064.1:ENST00000656326.1:ENST00000668711.1:ENST00000665172.1:ENST00000630520.3:ENST00000663209.1:ENST00000659305.1:ENST00000654601.1:ENST00000663375.1:ENST00000654958.1:ENST00000665838.1:ENST00000653606.1:ENST00000659941.1:ENST00000669583.1:ENST00000660903.1:ENST00000653596.1:ENST00000656308.1:ENST00000449178.6:ENST00000625955.3:ENST00000655140.1:ENST00000661989.1:ENST00000664419.1:ENST00000670785.1:ENST00000664773.1:ENST00000661703.1:ENST00000658454.1:ENST00000664049.1:ENST00000655058.1:ENST00000366234.7:ENST00000599427.5:ENST00000597318.5:ENST00000625518.2:ENST00000425333.5:ENST00000429599.6:ENST00000432604.5:ENST00000421843.5:ENST00000458686.5:ENST00000421255.5:ENST00000413069.5:ENST00000627019.1	lncRNA	lncRNA	lncRNA	lncRNA	2	72	2	2.9997	3.95256	4.90542	0.0561086	0.00986385	0.154188	0.0664239
chr1	12607081	12607181	402675	0	-	0.45	(0.419,0.45]	chr1	46226	109	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	73	2	2.3476	3.952495	5.55739	0.0461739	0.0310506	0.155334	0.119758
chr2	43914328	43914427	1135899	0	-	0.272727	[0,0.29]	chr2	124282	19	EXON_MRNA	EXON_MRNA:INTRON	LRPPRC	ENSG00000138095.20	ENST00000260665.12:ENST00000684454.1:ENST00000682308.1:ENST00000683459.1:ENST00000683623.1:ENST00000683125.1:ENST00000683994.1:ENST00000684619.1:ENST00000683833.1:ENST00000682546.1:ENST00000683080.1:ENST00000681993.1:ENST00000682585.1:ENST00000683220.1:ENST00000683796.1:ENST00000682607.1:ENST00000683590.1:ENST00000684306.1:ENST00000683213.1:ENST00000683409.1:ENST00000684418.1:ENST00000682779.1:ENST00000682885.1:ENST00000684743.1:ENST00000683346.1:ENST00000683072.1:ENST00000682303.1:ENST00000683329.1:ENST00000682933.1:ENST00000684383.1:ENST00000682480.1:ENST00000684290.1:ENST00000684341.1:ENST00000682595.1:ENST00000683645.1:ENST00000683802.1:ENST00000682845.1:ENST00000682295.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	3.08401	3.9524850000000002	4.82096	0.0456837	0.0199046	0.142336	0.100864
chr10	63511843	63511943	4700541	0	-	0.41	(0.39,0.419]	chr10	447747	460	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000633035.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	56	2	3.34529	3.9523599999999997	4.55943	0.104562	0.0137041	0.19835	0.0814223
chr18	76418765	76418865	7179307	0	-	0.33	(0.29,0.33]	chr18	730080	381	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.24556	3.95212	4.65868	0.0735584	0.0151115	0.17026	0.085778
chr2	99386518	99386618	858085	0	+	0.51	(0.485,0.523]	chr2	97211	32	INTRON	INTRON	EIF5B	ENSG00000158417.11	ENST00000617677.1:ENST00000289371.11	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.55201	3.9518400000000002	5.35167	0.0294163	0.0272692	0.119337	0.116079
chr9	134366979	134367079	4261093	0	+	0.49	(0.485,0.523]	chr9	406311	400	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	68	2	2.55201	3.9518400000000002	5.35167	0.0294163	0.0272692	0.119337	0.116079
chr12	6768293	6768388	5165699	0	+	0.578947	(0.523,0.58]	chr12	502315	12	INTRON	INTRON	PTMS	ENSG00000159335.18	ENST00000540667.5:ENST00000309083.8:ENST00000389462.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	2.46839	3.95125	5.43411	0.0683019	0.026041	0.193274	0.109673
chr16	85456108	85456208	6517632	0	+	0.58	(0.523,0.58]	chr16	646391	968	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.46839	3.95125	5.43411	0.0683019	0.026041	0.193274	0.109673
chr2	235998610	235998710	1067602	0	+	0.54	(0.523,0.58]	chr2	115748	296	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5:ENST00000418654.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	2.46839	3.95125	5.43411	0.0683019	0.026041	0.193274	0.109673
chr16	81629486	81629586	6509592	0	+	0.57	(0.523,0.58]	chr16	645926	74	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	2	137	2	3.88687	3.95121	4.01555	0.0113547	0.00221587	0.0723462	0.0247044
chr8	17567514	17567612	3763722	0	+	0.306122	(0.29,0.33]	chr8	361565	25	UTR3	UTR3:EXON_MRNA	SLC7A2	ENSG00000003989.18	ENST00000494857.6:ENST00000470360.5:ENST00000004531.14:ENST00000398090.3	protein_coding	protein_coding	protein_coding	protein_coding	9	444	2	3.23955	3.951175	4.6628	0.00117938	9.66902e-4	0.0186655	0.0158915
chr2	175086853	175086952	1321595	0	-	0.353535	(0.33,0.36]	chr2	141130	57	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000435004.6:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000478905.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	54	2	2.51922	3.95103	5.38284	0.0659899	0.0317908	0.189025	0.121384
chr16	4512254	4512353	6543394	0	-	0.545455	(0.523,0.58]	chr16	650872	17	UTR3	UTR3:EXON_MRNA	CDIP1	ENSG00000089486.17	ENST00000567695.6:ENST00000563332.6:ENST00000399599.7:ENST00000564828.5:ENST00000563507.5:ENST00000562334.5	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.18279	3.951005	4.71922	0.0721601	0.0168396	0.168159	0.0919482
chr16	85453009	85453109	6517601	0	+	0.63	(0.58,1]	chr16	646391	937	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.3216	3.9509250000000002	4.58025	0.0230709	0.0172566	0.102982	0.0923809
chr20	57398028	57398128	7496755	0	+	0.54	(0.523,0.58]	chr20	781791	43	INTRON	INTRON	RBM38	ENSG00000132819.17	ENST00000356208.10:ENST00000440234.6:ENST00000342690.4:ENST00000344785.10:ENST00000371219.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	62	2	2.70025	3.9506449999999997	5.20104	0.0763549	0.00648051	0.174544	0.0503748
chr11	70744282	70744382	5061724	0	-	0.61	(0.58,1]	chr11	492701	264	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.38295	3.95054	5.51813	0.0730701	0.013519	0.199669	0.0792526
chr14	70025245	70025345	5872635	0	+	0.4	(0.39,0.419]	chr14	573363	14	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.61462	3.950525	5.28643	0.0572875	0.041475	0.174149	0.136301
chr2	65422365	65422465	1172079	0	-	0.52	(0.485,0.523]	chr2	127582	418	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	2.81545	3.9503649999999997	5.08528	0.0647139	0.0086528	0.162218	0.0612699
chr1	214005672	214005772	339535	0	+	0.38	(0.36,0.39]	chr1	38102	4	SS5_PROX	SS5_PROX:INTRON	PROX1	ENSG00000117707.16	ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.26869	3.950195	4.6317	0.0950937	0.016118	0.189021	0.0897679
chr2	134159367	134159467	895824	0	+	0.39	(0.36,0.39]	chr2	101196	318	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	55	2	3.26869	3.950195	4.6317	0.0950937	0.016118	0.189021	0.0897679
chr5	80440204	80440290	2465523	0	+	0.372093	(0.36,0.39]	chr5	246291	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ZFYVE16	ENSG00000039319.17	ENST00000338008.9:ENST00000510158.5:ENST00000512558.5:ENST00000505560.5:ENST00000510995.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	53	2	2.85025	3.9498699999999998	5.04949	0.0563927	0.0373341	0.154188	0.139793
chr1	21605565	21605665	419502	0	-	0.63	(0.58,1]	chr1	48927	1	SS5_PROX	SS5_PROX:INTRON	RAP1GAP	ENSG00000076864.21	ENST00000374765.9:ENST00000471600.6:ENST00000374761.6:ENST00000374763.6:ENST00000542643.6:ENST00000611549.4:ENST00000495204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	63	2	2.7859	3.949725	5.11355	0.0271806	0.0136245	0.112113	0.0811816
chr19	18469584	18469683	7347887	0	-	0.555556	(0.523,0.58]	chr19	761486	33	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	68	2	3.1364	3.94965	4.7629	0.0400336	0.0167014	0.134064	0.0917029
chr8	22559178	22559276	3771884	0	+	0.540816	(0.523,0.58]	chr8	362926	6	INTRON	INTRON	SORBS3	ENSG00000120896.14	ENST00000240123.12:ENST00000517500.5:ENST00000517535.5:ENST00000523402.5:ENST00000520563.3:ENST00000524057.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	68	2	3.1364	3.94965	4.7629	0.0400336	0.0167014	0.134064	0.0917029
chr16	89431925	89432025	6661153	0	-	0.55	(0.523,0.58]	chr16	666753	2	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	245	2	3.46289	3.949265	4.43564	0.0112292	1.81391e-4	0.0719773	0.00421997
chr22	32818697	32818797	7717796	0	+	0.52	(0.485,0.523]	chr22	807776	162	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	1	68	2	3.13862	3.9490049999999997	4.75939	0.0398026	0.0172254	0.133884	0.0923809
chr17	77214023	77214120	6803114	0	+	0.701031	(0.58,1]	chr17	686684	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000585618.5:ENST00000436233.9:ENST00000443798.8:ENST00000591437.5:ENST00000431431.6:ENST00000588488.1:ENST00000587491.5:ENST00000588721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	57	2	2.87471	3.948925	5.02314	0.0495478	0.00638322	0.146562	0.0501889
chr9	14838154	14838254	4280096	0	-	0.33	(0.29,0.33]	chr9	408973	128	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	105	2	1.76575	3.9489199999999998	6.13209	0.0609838	0.00731667	0.180114	0.0568523
chr18	58054026	58054126	7071541	0	+	0.26	[0,0.29]	chr18	721089	4	SS3_PROX	SS3_PROX:INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5:ENST00000588516.5:ENST00000456986.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	57	2	2.62751	3.948765	5.27002	0.0743497	0.0048238	0.171851	0.0417661
chr1	224385643	224385743	671482	0	-	0.4	(0.39,0.419]	chr1	78901	6	UTR3	UTR3:EXON_MRNA	WDR26	ENSG00000162923.17	ENST00000414423.9:ENST00000678917.1:ENST00000651911.2:ENST00000678879.1:ENST00000480676.2	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.90127	3.9483249999999996	4.99538	0.0613573	0.0339406	0.158506	0.133629
chr16	11795018	11795118	6550013	0	-	0.4	(0.39,0.419]	chr16	652048	121	INTRON	INTRON	ZC3H7A	ENSG00000122299.12	ENST00000355758.9:ENST00000571198.5:ENST00000575170.1:ENST00000576018.5:ENST00000572781.5:ENST00000574995.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	2.90127	3.9483249999999996	4.99538	0.0613573	0.0339406	0.158506	0.133629
chr6	130923114	130923214	3260784	0	-	0.41	(0.39,0.419]	chr6	315551	139	INTRON	INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000528282.5:ENST00000392427.7:ENST00000368128.6:ENST00000527411.5:ENST00000525271.5:ENST00000529208.5:ENST00000525193.5:ENST00000527659.5:ENST00000639623.1:ENST00000530148.5:ENST00000528179.5:ENST00000526333.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	2.90127	3.9483249999999996	4.99538	0.0613573	0.0339406	0.158506	0.133629
chr22	46956705	46956805	7746962	0	+	0.6	(0.58,1]	chr22	812232	429	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.63525	3.948315	5.26138	0.0459151	0.021217	0.154743	0.0996078
chr2	152353212	152353312	925643	0	+	0.31	(0.29,0.33]	chr2	103058	171	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	2	84	2	2.28575	3.9482850000000003	5.61082	0.0762843	0.00264971	0.174544	0.027979
chr1	51877482	51877582	482768	0	-	0.4	(0.39,0.419]	chr1	57199	1	SS5_PROX	SS5_PROX:INTRON	NRDC	ENSG00000078618.23	ENST00000354831.11:ENST00000539524.5:ENST00000352171.12:ENST00000491410.1:ENST00000468722.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	2.84832	3.948235	5.04815	0.0572698	0.0375279	0.154343	0.139823
chr5	177451774	177451873	2600323	0	+	0.646465	(0.58,1]	chr5	258321	30	INTRON	INTRON	PRR7	ENSG00000131188.12	ENST00000507881.5:ENST00000323249.8:ENST00000502922.5:ENST00000510492.1	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	3.13356	3.9482	4.76284	0.0471737	0.00559148	0.143232	0.0460395
chr2	134228113	134228213	896512	0	+	0.44	(0.419,0.45]	chr2	101196	1006	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	3.02039	3.948185	4.87598	0.0768574	0.0276403	0.174882	0.120359
chrX	1396574	1396648	7830126	0	+	0.594595	(0.58,1]	chrX	822049	3	EXON_LNCRNA	EXON_LNCRNA	LINC00106	ENSG00000236871.7	ENST00000434938.7	lncRNA	lncRNA	lncRNA	lncRNA	4	212	2	3.6542	3.94818	4.24216	0.00515995	2.03127e-4	0.0472296	0.00457973
chr16	3467276	3467376	6377246	0	+	0.63	(0.58,1]	chr16	630439	2	SS3_PROX	SS3_PROX:INTRON	NAA60	ENSG00000122390.19	ENST00000572757.5:ENST00000573593.5:ENST00000570372.5:ENST00000575936.5:ENST00000407558.9:ENST00000424546.6:ENST00000575733.5:ENST00000649205.1:ENST00000572169.6:ENST00000573580.5:ENST00000574950.5:ENST00000649360.1:ENST00000574328.5:ENST00000421765.7:ENST00000360862.9:ENST00000414063.6:ENST00000577013.6:ENST00000572584.2:ENST00000571107.5:ENST00000572739.5:ENST00000576787.5:ENST00000571696.6:ENST00000573345.5:ENST00000575076.5:ENST00000576916.5:ENST00000572942.5:ENST00000570551.5:ENST00000574380.5:ENST00000572131.5:ENST00000648681.1:ENST00000570819.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	2.78186	3.947705	5.11355	0.0342923	0.0271806	0.13449	0.112113
chr17	81825994	81826090	6985924	0	-	0.645833	(0.58,1]	chr17	713906	16	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	MCRIP1	ENSG00000225663.8	ENST00000455127.7:ENST00000457257.5:ENST00000538396.5:ENST00000572645.5:ENST00000576730.5:ENST00000573478.5:ENST00000574190.5:ENST00000576431.5:ENST00000575061.2	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.78186	3.947705	5.11355	0.0342923	0.0271806	0.13449	0.112113
chr20	10427233	10427332	7524952	0	-	0.444444	(0.419,0.45]	chr20	785433	61	INTRON	INTRON	MKKS	ENSG00000125863.20:ENSG00000285508.1	ENST00000347364.7:ENST00000651692.1:ENST00000652676.1:ENST00000399054.6:ENST00000609375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.7072600000000002	3.9476500000000003	5.18804	0.051668	0.0496323	0.160725	0.148503
chr1	55059147	55059226	132598	0	+	0.556962	(0.523,0.58]	chr1	16382	1	SS3_PROX	SS3_PROX:INTRON	PCSK9	ENSG00000169174.11	ENST00000302118.5:ENST00000673903.1:ENST00000490692.1:ENST00000673913.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	2.54344	3.9473399999999996	5.35124	0.0599121	0.0295772	0.177269	0.116079
chr22	50710320	50710419	7755288	0	+	0.606061	(0.58,1]	chr22	812777	38	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	66	2	2.09276	3.94733	5.8019	0.0619333	0.007984	0.180615	0.0596361
chr16	2100840	2100915	6535062	0	-	0.653333	(0.58,1]	chr16	649528	2	SS3_PROX	SS3_PROX:INTRON	PKD1	ENSG00000008710.20	ENST00000262304.9:ENST00000423118.5:ENST00000487932.5:ENST00000483731.5:ENST00000415938.7:ENST00000486339.6:ENST00000567946.1:ENST00000562297.5:ENST00000496574.6:ENST00000471603.6:ENST00000480227.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	65	2	3.00436	3.946905	4.88945	0.0388928	0.00785951	0.131324	0.0576181
chrX	74244392	74244491	8068709	0	-	0.232323	[0,0.29]	chrX	841746	16	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1	lncRNA	lncRNA	lncRNA	lncRNA	1	50	2	2.59271	3.946765	5.30082	0.0532832	0.0212677	0.167062	0.0996805
chr9	133733442	133733542	4427916	0	-	0.61	(0.58,1]	chr9	423128	2	SS5_PROX	SS5_PROX:INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000427237.6:ENST00000371867.5:ENST00000298628.6	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.74846	3.946715	5.14497	0.0605281	0.00474658	0.158506	0.0413976
chr14	95319110	95319210	6048840	0	-	0.64	(0.58,1]	chr14	593433	115	INTRON	INTRON	CLMN	ENSG00000165959.12	ENST00000298912.9:ENST00000553733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	122	2	3.16566	3.946285	4.72691	0.0304114	1.84649e-4	0.11845	0.0042795
chrX	20265298	20265398	7995414	0	-	0.47	(0.45,0.485]	chrX	836372	4	SS5_PROX	SS5_PROX:INTRON	RPS6KA3	ENSG00000177189.14	ENST00000379565.9:ENST00000643085.1:ENST00000645270.1:ENST00000643402.1:ENST00000644368.1:ENST00000647265.1:ENST00000645268.1:ENST00000646610.1:ENST00000643337.1:ENST00000642835.1:ENST00000644893.1:ENST00000438357.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	543	2	3.57714	3.946075	4.31501	0.00463061	9.8758e-5	0.0443499	0.00271058
chr2	96184956	96185054	1220354	0	-	0.540816	(0.523,0.58]	chr2	131670	2	UTR3	UTR3:EXON_MRNA	STARD7	ENSG00000084090.14	ENST00000337288.10:ENST00000479456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	69	2	2.82229	3.9459299999999997	5.06957	0.0448011	0.014802	0.140478	0.0847481
chr11	2982299	2982393	4972716	0	-	0.414894	(0.39,0.419]	chr11	481300	1	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	2.73134	3.9459099999999996	5.16048	0.0798958	0.00999413	0.177037	0.0667545
chr3	42149899	42149999	1451029	0	+	0.49	(0.485,0.523]	chr3	154872	3	SS5_PROX	SS5_PROX:INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2:ENST00000484786.5:ENST00000327628.10:ENST00000613405.4:ENST00000449246.5:ENST00000418790.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	2.45723	3.94588	5.43453	0.0700289	0.0258944	0.195209	0.109555
chr8	8349810	8349910	3934104	0	-	0.34	(0.33,0.36]	chr8	376133	98	INTRON	INTRON	PRAG1	ENSG00000275342.5	ENST00000615670.5:ENST00000622241.1	protein_coding	protein_coding	protein_coding	protein_coding	4	233	2	2.90472	3.94585	4.98698	0.0230811	1.87123e-4	0.102982	0.00432753
chr13	113211980	113212079	5657327	0	+	0.434343	(0.419,0.45]	chr13	555523	15	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000488558.2:ENST00000375440.9:ENST00000474116.5:ENST00000494985.5:ENST00000463426.5:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	67	2	2.68635	3.945715	5.20508	0.0876314	0.00979452	0.183437	0.0664239
chr7	98318045	98318139	3648378	0	-	0.585106	(0.58,1]	chr7	351235	3	INTRON	INTRON	BAIAP2L1	ENSG00000006453.14	ENST00000005260.9:ENST00000462558.5:ENST00000473569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	126	2	3.72143	3.945165	4.1689	0.00440581	0.00366718	0.0430291	0.0346803
chr6	2162131	2162231	3084503	0	-	0.43	(0.419,0.45]	chr6	299521	370	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	2.26209	3.9450700000000003	5.62805	0.0541225	0.0280406	0.167824	0.113651
chr22	29966578	29966678	7710194	0	+	0.34	(0.33,0.36]	chr22	806661	91	INTRON	INTRON	MTMR3	ENSG00000100330.16	ENST00000333027.7:ENST00000401950.7:ENST00000495098.5:ENST00000445401.5:ENST00000323630.9:ENST00000351488.7:ENST00000415511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.83079	3.9449949999999996	5.0592	0.0504445	0.0376711	0.148216	0.140049
chr8	124690162	124690261	4064560	0	-	0.525253	(0.523,0.58]	chr8	387132	168	INTRON	INTRON	MTSS1	ENSG00000170873.19	ENST00000518547.6:ENST00000378017.7:ENST00000325064.9:ENST00000522162.1	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	2.19842	3.9449949999999996	5.69157	0.0551586	0.0172851	0.169218	0.0897247
chr9	123404688	123404788	4396607	0	-	0.55	(0.523,0.58]	chr9	419589	8	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	69	2	2.19842	3.9449949999999996	5.69157	0.0551586	0.0172851	0.169218	0.0897247
chr11	70778456	70778556	5062066	0	-	0.47	(0.45,0.485]	chr11	492701	606	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	71	2	2.14074	3.944935	5.74913	0.0632663	0.017574	0.183518	0.0906595
chr1	52915130	52915198	485583	0	-	0.455882	(0.45,0.485]	chr1	57729	1	UTR3	UTR3:EXON_MRNA:INTRON	ECHDC2	ENSG00000121310.17	ENST00000536120.5:ENST00000371522.9:ENST00000460612.5:ENST00000371520.5:ENST00000358358.9:ENST00000476477.6:ENST00000467988.2:ENST00000488268.5:ENST00000544365.5:ENST00000495920.5:ENST00000544531.5:ENST00000480312.6:ENST00000542552.1:ENST00000474789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	146	2	3.82378	3.94478	4.06578	0.0089136	0.0039984	0.0637233	0.0370532
chr16	50619103	50619203	6452119	0	+	0.49	(0.485,0.523]	chr16	639912	31	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.67159	3.94464	5.21769	0.0478226	0.0359739	0.1588	0.127853
chr19	38380698	38380798	7257531	0	+	0.57	(0.523,0.58]	chr19	743869	4	SS3_PROX	SS3_PROX:INTRON	PSMD8	ENSG00000099341.12	ENST00000620216.4:ENST00000215071.9:ENST00000585598.1:ENST00000602911.5:ENST00000592561.5:ENST00000592001.5:ENST00000592035.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	2.92656	3.9442649999999997	4.96197	0.0521137	0.0289226	0.148503	0.124
chr16	570389	570489	6368117	0	+	0.39	(0.36,0.39]	chr16	627944	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PIGQ	ENSG00000007541.17	ENST00000293874.2:ENST00000409527.6:ENST00000321878.10:ENST00000439574.1:ENST00000422307.6:ENST00000636657.1:ENST00000026218.9:ENST00000470411.2:ENST00000637701.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	53	2	2.73813	3.943855	5.14958	0.0493212	0.0459393	0.154743	0.146207
chr2	11532648	11532748	720189	0	+	0.53	(0.523,0.58]	chr2	84086	153	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000628795.2	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.71726	3.9434750000000003	5.16969	0.0387762	0.0188054	0.131324	0.0980631
chr16	12170616	12170716	6391574	0	+	0.56	(0.523,0.58]	chr16	631959	350	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.98158	3.94329	4.905	0.0563605	0.0258432	0.154188	0.116361
chr6	138465352	138465451	3273794	0	-	0.454545	(0.45,0.485]	chr6	316903	178	INTRON	INTRON	NHSL1	ENSG00000135540.12	ENST00000427025.6:ENST00000343505.10:ENST00000342260.9:ENST00000426841.6:ENST00000491526.6:ENST00000533765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	335	2	3.74792	3.942805	4.13769	0.00783394	3.31075e-4	0.0592199	0.00650249
chr14	57234332	57234432	5988964	0	-	0.48	(0.45,0.485]	chr14	587405	3	SS3_PROX	SS3_PROX:INTRON	EXOC5	ENSG00000070367.16	ENST00000621441.5:ENST00000413566.6:ENST00000340918.11:ENST00000555148.5:ENST00000556629.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	69	2	2.58493	3.94233	5.29973	0.035042	0.0263561	0.12704	0.118015
chr4	2813453	2813548	2000240	0	+	0.484211	(0.45,0.485]	chr4	203927	6	INTRON	INTRON	SH3BP2	ENSG00000087266.17	ENST00000503219.5:ENST00000512131.5:ENST00000503393.8:ENST00000510074.5:ENST00000511237.5:ENST00000504294.5:ENST00000508385.5:ENST00000513020.5:ENST00000511663.5:ENST00000512014.5:ENST00000513095.5:ENST00000502260.5:ENST00000435136.8:ENST00000511185.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	54	2	3.38668	3.94227	4.49786	0.101311	0.0113463	0.196131	0.0719708
chr2	171016437	171016535	1312723	0	-	0.336735	(0.33,0.36]	chr2	140568	11	INTRON	INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	2.98982	3.94225	4.89468	0.0629186	0.027642	0.160778	0.120359
chr6	169651829	169651929	3304382	0	-	0.48	(0.45,0.485]	chr6	319871	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	69	2	2.37986	3.94204	5.50422	0.0401325	0.0257993	0.144727	0.109555
chr21	43959859	43959959	7625383	0	+	0.73	(0.58,1]	chr21	796930	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000422850.5:ENST00000546158.1:ENST00000479117.5:ENST00000481319.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	2.32693	3.9418699999999998	5.55681	0.038688	0.0126042	0.142489	0.0761905
chr22	50235420	50235519	7827215	0	-	0.575758	(0.523,0.58]	chr22	821200	15	INTRON	INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000434349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	61	2	2.57767	3.9414100000000003	5.30515	0.090356	0.00509102	0.186369	0.0433513
chr5	81089166	81089264	2469539	0	+	0.295918	(0.29,0.33]	chr5	246604	7	INTRON	INTRON	RASGRF2	ENSG00000113319.13	ENST00000265080.9:ENST00000503795.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	68	2	2.6122	3.94137	5.27054	0.0308815	0.0243218	0.119556	0.113231
chr9	124525463	124525554	4402891	0	-	0.472527	(0.45,0.485]	chr9	419852	2	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.92826	3.94103	4.9538	0.0569772	0.0301249	0.154343	0.126768
chrX	133791740	133791839	8114084	0	-	0.474747	(0.45,0.485]	chrX	845523	372	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	2.87326	3.940925	5.00859	0.052901	0.033576	0.14912	0.133139
chr1	35555405	35555502	445146	0	-	0.443299	(0.419,0.45]	chr1	53006	5	INTRON	INTRON	KIAA0319L	ENSG00000142687.18	ENST00000325722.8:ENST00000426982.6:ENST00000482929.6:ENST00000478463.6:ENST00000470388.5:ENST00000492888.1:ENST00000469892.5:ENST00000476329.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	54	2	2.64776	3.940915	5.23407	0.0551054	0.0486006	0.169163	0.145074
chr2	105765471	105765571	868773	0	+	0.43	(0.419,0.45]	chr2	98078	192	INTRON	INTRON	NCK2	ENSG00000071051.14	ENST00000233154.9:ENST00000451463.6:ENST00000393348.6	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.64776	3.940915	5.23407	0.0551054	0.0486006	0.169163	0.145074
chr8	9772368	9772422	3754900	0	+	0.444444	(0.419,0.45]	chr8	360884	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.64776	3.940915	5.23407	0.0551054	0.0486006	0.169163	0.145074
chr2	26092962	26093062	731409	0	+	0.4	(0.39,0.419]	chr2	85215	503	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	54	2	3.18369	3.940835	4.69798	0.088901	0.0193131	0.183874	0.0994526
chr1	165900399	165900499	263213	0	+	0.47	(0.45,0.485]	chr1	31081	20	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1:ENST00000462329.5:ENST00000464197.5:ENST00000469256.6:ENST00000470820.1:ENST00000463772.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	83	2	2.30281	3.940675	5.57854	0.0311884	0.0230065	0.127822	0.102982
chr10	28561031	28561131	4469695	0	+	0.42	(0.419,0.45]	chr10	427649	226	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	149	2	3.57923	3.94052	4.30181	0.0243601	0.00146956	0.106605	0.0185589
chr13	97363735	97363835	5632228	0	+	0.46	(0.45,0.485]	chr13	553214	57	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000449284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	188	2	3.11234	3.9404500000000002	4.76856	0.0222811	3.08736e-4	0.102208	0.00621118
chr14	31130603	31130700	5952344	0	-	0.453608	(0.45,0.485]	chr14	583224	13	EXON_MRNA	EXON_MRNA:INTRON	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000691390.1:ENST00000553957.6:ENST00000689382.1:ENST00000691123.1:ENST00000687002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	138	2	3.69829	3.93995	4.18161	0.0169139	0.00158459	0.088829	0.0196418
chr16	81624994	81625094	6509547	0	+	0.47	(0.45,0.485]	chr16	645926	29	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	2	138	2	3.69829	3.93995	4.18161	0.0169139	0.00158459	0.088829	0.0196418
chr8	22386967	22387067	3770218	0	+	0.51	(0.485,0.523]	chr8	362727	71	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	4	93	2	2.02817	3.9397349999999998	5.8513	0.0416301	0.0131886	0.149021	0.0785398
chr14	91223378	91223478	5899591	0	+	0.54	(0.523,0.58]	chr14	576436	3	SS3_PROX	SS3_PROX:INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	50	2	2.80981	3.9396899999999997	5.06957	0.0448011	0.0364868	0.140478	0.139793
chr8	133287463	133287562	4084199	0	-	0.616162	(0.58,1]	chr8	388350	22	INTRON	INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000676005.1:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1:ENST00000674839.1:ENST00000676064.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	108	2	3.38811	3.939635	4.49116	0.0207449	0.008949	0.102713	0.0637469
chr7	138549565	138549665	3502904	0	+	0.46	(0.45,0.485]	chr7	337534	104	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	3.30591	3.939205	4.5725	0.0926859	0.0135996	0.188571	0.0811697
chr13	98406898	98406997	5636335	0	+	0.575758	(0.523,0.58]	chr13	553598	106	UTR3	UTR3:EXON_MRNA:INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000457029.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	158	2	3.44013	3.939065	4.438	0.00938609	0.00408988	0.064735	0.0413652
chrX	74213945	74214040	8068398	0	-	0.368421	(0.36,0.39]	chrX	841724	4	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000641360.1:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2	lncRNA	lncRNA	lncRNA	lncRNA	3	87	2	1.9317	3.9390400000000003	5.9463800000000004	0.0683899	0.0151971	0.193274	0.084474
chr20	58689144	58689243	7498569	0	+	0.454545	(0.45,0.485]	chr20	781977	98	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1:ENST00000413559.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	1	51	2	2.98123	3.93904	4.89685	0.0614781	0.0270875	0.158506	0.119337
chr7	128005940	128006039	3471791	0	+	0.454545	(0.45,0.485]	chr7	335434	80	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000470723.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.98123	3.93904	4.89685	0.0614781	0.0270875	0.158506	0.119337
chr1	16124628	16124726	403823	0	-	0.459184	(0.45,0.485]	chr1	46418	4	UTR3	UTR3:EXON_MRNA	EPHA2	ENSG00000142627.13	ENST00000358432.8	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	2.92407	3.938935	4.9538	0.0569772	0.0124115	0.154343	0.0765738
chr2	162049000	162049100	1294097	0	-	0.35	(0.33,0.36]	chr2	138963	11	INTRON	INTRON	DPP4	ENSG00000197635.11	ENST00000676810.1:ENST00000360534.8:ENST00000678566.1:ENST00000678668.1:ENST00000676624.1:ENST00000679104.1:ENST00000676479.1:ENST00000676996.1:ENST00000677212.1:ENST00000678740.1:ENST00000678522.1:ENST00000434918.6:ENST00000676768.1:ENST00000490286.5:ENST00000416189.6:ENST00000494507.2:ENST00000461836.6:ENST00000497461.5:ENST00000413651.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	71	2	2.7184	3.9388549999999998	5.15931	0.043896	0.0206109	0.139792	0.102713
chr17	82909707	82909807	6819992	0	+	0.6	(0.58,1]	chr17	689430	4	SS5_PROX	SS5_PROX:INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	3.25332	3.938675	4.62403	0.0578275	0.0120565	0.154343	0.0754623
chr15	67103222	67103322	6139450	0	+	0.49	(0.485,0.523]	chr15	603944	38	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1:ENST00000559092.1:ENST00000560175.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	2.97038	3.9379	4.90542	0.0561086	0.0267011	0.154188	0.118343
chr22	28468170	28468270	7779712	0	-	0.5	(0.485,0.523]	chr22	815741	252	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.97038	3.9379	4.90542	0.0561086	0.0267011	0.154188	0.118343
chr16	16180736	16180834	6556676	0	-	0.489796	(0.485,0.523]	chr16	653122	14	INTRON	INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	2.85817	3.9376800000000003	5.01719	0.0480495	0.0334631	0.144601	0.133139
chr19	4392580	4392679	7313308	0	-	0.484848	(0.45,0.485]	chr19	754735	21	INTRON	INTRON	SH3GL1	ENSG00000141985.9	ENST00000269886.7:ENST00000598564.5:ENST00000417295.6:ENST00000598219.1	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.49029	3.93766	5.38503	0.0676934	0.0308908	0.193219	0.119556
chr13	112696911	112697011	5652609	0	+	0.7	(0.58,1]	chr13	554896	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000419448.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.71042	3.937475	5.16453	0.0396128	0.0249802	0.143388	0.10758
chr20	3194137	3194233	7515136	0	-	0.6875	(0.58,1]	chr20	784523	20	INTRON	INTRON	DDRGK1	ENSG00000198171.13	ENST00000354488.8:ENST00000470203.1:ENST00000380201.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.71042	3.937475	5.16453	0.0396128	0.0249802	0.143388	0.10758
chr1	174003491	174003591	620761	0	-	0.35	(0.33,0.36]	chr1	73467	100	INTRON	INTRON	RC3H1	ENSG00000135870.12	ENST00000367696.7	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.03916	3.93727	4.83538	0.0679743	0.0250322	0.164413	0.114418
chr15	52551234	52551334	6265558	0	-	0.35	(0.33,0.36]	chr15	617621	43	UTR3	UTR3:EXON_MRNA	ARPP19	ENSG00000128989.11	ENST00000566423.5:ENST00000249822.9:ENST00000561650.5:ENST00000568196.1	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.03916	3.93727	4.83538	0.0679743	0.0250322	0.164413	0.114418
chr1	150365419	150365518	241864	0	+	0.444444	(0.419,0.45]	chr1	27348	1	INTRON	INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8:ENST00000369067.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	88	2	2.39114	3.93712	5.4831	0.0345118	0.0285497	0.126025	0.123177
chr2	26092363	26092463	731403	0	+	0.36	(0.33,0.36]	chr2	85215	497	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	70	2	2.57664	3.9370899999999995	5.29754	0.0360263	0.0278327	0.127853	0.120995
chrX	71543766	71543866	7905786	0	+	0.37	(0.36,0.39]	chrX	828347	53	INTRON	INTRON	OGT	ENSG00000147162.14	ENST00000373719.8:ENST00000488174.5:ENST00000373701.7:ENST00000498566.3:ENST00000444774.3:ENST00000455587.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	71	2	2.50047	3.93677	5.37307	0.0361409	0.033505	0.133139	0.127853
chr2	191697159	191697259	978435	0	+	0.39	(0.36,0.39]	chr2	107746	6	INTRON	INTRON	NABP1	ENSG00000173559.15	ENST00000674262.1:ENST00000674360.1:ENST00000674406.1:ENST00000674414.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	71	2	2.381	3.9366199999999996	5.49224	0.0423665	0.0304242	0.149195	0.11845
chr2	54602722	54602821	799744	0	+	0.40404	(0.39,0.419]	chr2	90808	31	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7:ENST00000333896.5	protein_coding	protein_coding	protein_coding	protein_coding	4	268	2	3.38659	3.93652	4.48645	0.0156657	2.38705e-4	0.0851928	0.00514561
chr15	52777301	52777401	6267291	0	-	0.41	(0.39,0.419]	chr15	617751	191	INTRON	INTRON	ONECUT1	ENSG00000169856.9	ENST00000305901.7:ENST00000561401.3:ENST00000560699.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	2.67669	3.9362399999999997	5.19579	0.051368	0.0469937	0.165482	0.143232
chr22	21449299	21449398	7689855	0	+	0.414141	(0.39,0.419]	chr22	804733	27	UTR3	UTR3:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.67669	3.9362399999999997	5.19579	0.051368	0.0469937	0.165482	0.143232
chr4	884984	885084	2178452	0	-	0.57	(0.523,0.58]	chr4	220625	5	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	2.85567	3.93622	5.01677	0.0482765	0.0136981	0.144601	0.0814223
chr8	133294181	133294280	4084267	0	-	0.494949	(0.485,0.523]	chr8	388356	54	INTRON	INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1:ENST00000674839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	87	2	3.74439	3.93578	4.12717	0.0545434	0.0145578	0.167824	0.0824156
chr2	54578877	54578977	799503	0	+	0.44	(0.419,0.45]	chr2	90800	196	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7:ENST00000333896.5	protein_coding	protein_coding	protein_coding	protein_coding	3	90	2	2.5494	3.935675	5.32195	0.0431627	0.0203943	0.138403	0.102656
chr3	48427779	48427876	1766712	0	-	0.680412	(0.58,1]	chr3	182283	21	INTRON	INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	155	2	3.75213	3.9354400000000003	4.11875	0.00489075	9.51475e-4	0.0457614	0.0136675
chr1	17673086	17673186	54942	0	+	0.56	(0.523,0.58]	chr1	5603	81	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	69	2	2.14543	3.93515	5.72487	0.0609283	0.0163679	0.179956	0.0875379
chr10	103688337	103688437	4756979	0	-	0.56	(0.523,0.58]	chr10	454779	103	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	69	2	2.14543	3.93515	5.72487	0.0609283	0.0163679	0.179956	0.0875379
chr17	57478878	57478977	6762001	0	+	0.424242	(0.419,0.45]	chr17	682137	338	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	66	2	2.61392	3.935035	5.25615	0.0961463	0.00879729	0.189169	0.0615125
chr20	382249	382332	7414323	0	+	0.518072	(0.485,0.523]	chr20	772275	4	SS3_PROX	SS3_PROX:INTRON	TRIB3	ENSG00000101255.12	ENST00000615226.4:ENST00000217233.9:ENST00000449710.5:ENST00000422053.3	protein_coding	protein_coding	protein_coding	protein_coding	4	94	2	2.28228	3.934755	5.58723	0.0239419	0.0203514	0.11182	0.0979211
chr11	70817264	70817364	5062456	0	-	0.52	(0.485,0.523]	chr11	492713	97	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	3.02337	3.93474	4.84611	0.0608067	0.023933	0.158506	0.111785
chr7	75918901	75919001	3396642	0	+	0.49	(0.485,0.523]	chr7	328047	2	SS5_PROX	SS5_PROX:INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	50	2	3.02337	3.93474	4.84611	0.0608067	0.023933	0.158506	0.111785
chr18	76424659	76424759	7179366	0	-	0.55	(0.523,0.58]	chr18	730080	440	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	2	133	2	3.7036	3.934615	4.16563	0.0156851	0.00147865	0.0852152	0.0186157
chr12	26451237	26451337	5397722	0	-	0.5	(0.485,0.523]	chr12	528476	72	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000451599.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	2.79862	3.934305	5.06999	0.0445854	0.0375966	0.140478	0.139924
chr6	30551277	30551375	3117082	0	-	0.510204	(0.485,0.523]	chr6	302417	34	INTRON	INTRON	GNL1	ENSG00000204590.13	ENST00000376621.8:ENST00000462708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	2.79862	3.934305	5.06999	0.0445854	0.0375966	0.140478	0.139924
chr17	44066063	44066163	6910579	0	-	0.58	(0.523,0.58]	chr17	703402	2	SS5_PROX	SS5_PROX:INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.74768	3.93409	5.1205	0.0416463	0.0411359	0.147756	0.136301
chr1	151200383	151200482	244330	0	+	0.545455	(0.523,0.58]	chr1	27792	8	INTRON	INTRON	PIP5K1A	ENSG00000143398.20	ENST00000447555.5:ENST00000349792.9:ENST00000368888.9:ENST00000409426.5:ENST00000368890.8:ENST00000441902.6:ENST00000424999.1:ENST00000454769.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	178	2	3.75796	3.93382	4.10968	0.0075776	0.00133135	0.0579104	0.0173248
chr10	103691928	103692028	4757015	0	-	0.53	(0.523,0.58]	chr10	454779	139	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	178	2	3.75796	3.93382	4.10968	0.0075776	0.00133135	0.0579104	0.0173248
chr1	43567494	43567594	107114	0	+	0.61	(0.58,1]	chr1	13192	132	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.47204	3.93375	5.39546	0.0623526	0.0168207	0.181127	0.0884836
chr10	79163631	79163731	4532993	0	+	0.59	(0.58,1]	chr10	432438	11	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.47204	3.93375	5.39546	0.0623526	0.0168207	0.181127	0.0884836
chr15	78932657	78932757	6337001	0	-	0.59	(0.58,1]	chr15	624713	3	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	CTSH	ENSG00000103811.18	ENST00000677011.1:ENST00000220166.10:ENST00000676639.1:ENST00000676510.1:ENST00000678727.1:ENST00000679334.1:ENST00000679017.1:ENST00000677810.1:ENST00000676763.1:ENST00000678886.1:ENST00000677921.1:ENST00000676596.1:ENST00000678487.1:ENST00000649928.2:ENST00000527715.6:ENST00000530010.6:ENST00000676671.1:ENST00000534533.6:ENST00000678283.1:ENST00000678841.1:ENST00000679125.1:ENST00000677316.1:ENST00000678031.1:ENST00000678644.1:ENST00000676808.1:ENST00000677207.1:ENST00000677238.1:ENST00000678281.1:ENST00000678799.1:ENST00000525807.6:ENST00000528191.6:ENST00000678817.1:ENST00000676880.1:ENST00000528741.6:ENST00000678415.1:ENST00000679172.1:ENST00000533777.5:ENST00000677448.1:ENST00000677534.1:ENST00000677367.1:ENST00000678397.1:ENST00000679047.1:ENST00000676865.1:ENST00000677102.1:ENST00000677874.1:ENST00000677254.1:ENST00000677936.1:ENST00000678940.1:ENST00000677789.1:ENST00000615999.5:ENST00000677049.1:ENST00000678033.1:ENST00000679211.1:ENST00000676850.1:ENST00000534268.6:ENST00000529861.6:ENST00000676738.1:ENST00000677320.1:ENST00000529612.6:ENST00000676668.1:ENST00000529263.7:ENST00000534038.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	1	49	2	2.47204	3.93375	5.39546	0.0623526	0.0168207	0.181127	0.0884836
chr6	43782283	43782381	2921042	0	+	0.622449	(0.58,1]	chr6	287445	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	VEGFA	ENSG00000112715.26	ENST00000672860.3:ENST00000372067.8:ENST00000425836.8:ENST00000372064.9:ENST00000482630.7:ENST00000372055.9:ENST00000413642.8:ENST00000324450.11:ENST00000417285.7:ENST00000372077.8:ENST00000519767.5:ENST00000520948.5:ENST00000523950.5:ENST00000523873.5:ENST00000518824.5:ENST00000457104.6:ENST00000518689.5:ENST00000523125.5:ENST00000230480.10:ENST00000480614.1:ENST00000520265.1:ENST00000497139.5:ENST00000493786.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	49	2	2.47204	3.93375	5.39546	0.0623526	0.0168207	0.181127	0.0884836
chr6	144689431	144689531	3023964	0	+	0.52	(0.485,0.523]	chr6	295451	105	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000367526.8	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.60361	3.93368	5.26375	0.0541523	0.0335928	0.167824	0.124319
chr15	25018460	25018558	6064038	0	+	0.367347	(0.36,0.39]	chr15	595414	34	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	6	370	2	3.75507	3.93347	4.11187	0.00815324	2.3926e-4	0.0605301	0.00515627
chr11	70756473	70756573	5061846	0	-	0.6	(0.58,1]	chr11	492701	386	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.97713	3.93329	4.88945	0.0388928	0.0226795	0.131324	0.108193
chr11	118622232	118622330	4948415	0	+	0.663265	(0.58,1]	chr11	477774	3	INTRON	INTRON	PHLDB1	ENSG00000019144.20	ENST00000361417.6:ENST00000530994.5:ENST00000600882.6:ENST00000528594.5:ENST00000621027.4:ENST00000356063.9:ENST00000532639.3:ENST00000527259.5:ENST00000526374.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	2.97713	3.93329	4.88945	0.0388928	0.0226795	0.131324	0.108193
chr16	16377196	16377296	6409345	0	+	0.64	(0.58,1]	chr16	633705	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PKD1P2	ENSG00000227827.3	ENST00000532739.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	46	2	2.97713	3.93329	4.88945	0.0388928	0.0226795	0.131324	0.108193
chr7	226238	226338	3305917	0	+	0.63	(0.58,1]	chr7	320161	169	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.97713	3.93329	4.88945	0.0388928	0.0226795	0.131324	0.108193
chr17	57107445	57107522	6759589	0	+	0.337662	(0.33,0.36]	chr17	681979	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AKAP1	ENSG00000121057.13	ENST00000337714.8:ENST00000571629.5:ENST00000621116.4:ENST00000572557.5:ENST00000481416.5:ENST00000539273.5:ENST00000314126.4:ENST00000576295.5:ENST00000573326.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	70	2	2.61341	3.933165	5.25292	0.0384256	0.0257767	0.131324	0.116361
chr17	72927642	72927742	6967565	0	-	0.4	(0.39,0.419]	chr17	710518	775	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	55	2	3.30655	3.93299	4.55943	0.104562	0.0148983	0.19835	0.0847741
chr3	141549771	141549871	1589087	0	+	0.4	(0.39,0.419]	chr3	167818	88	INTRON	INTRON	RASA2	ENSG00000155903.14	ENST00000286364.9	protein_coding	protein_coding	protein_coding	protein_coding	2	75	2	2.92533	3.9329650000000003	4.9406	0.0658437	0.0136122	0.162385	0.0811697
chr17	17829570	17829669	6865819	0	-	0.535354	(0.523,0.58]	chr17	695923	56	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	2	84	2	2.24595	3.932855	5.61976	0.0830542	0.00236826	0.180329	0.0259199
chr12	71626159	71626259	5454811	0	-	0.33	(0.29,0.33]	chr12	536466	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZFC3H1	ENSG00000133858.17	ENST00000378743.9:ENST00000552994.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	2.95342	3.9327949999999996	4.91217	0.0522244	0.0280419	0.148503	0.121542
chr7	213067	213167	3305785	0	+	0.54	(0.523,0.58]	chr7	320161	37	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.35934	3.9326350000000003	4.50593	0.094303	0.0113252	0.188571	0.071894
chr17	82531687	82531787	6816894	0	+	0.47	(0.45,0.485]	chr17	689038	110	INTRON	INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000527313.6:ENST00000570585.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	105	2	1.85077	3.931915	6.01306	0.0523187	0.0113949	0.167062	0.0723462
chr1	43565701	43565800	107096	0	+	0.717172	(0.58,1]	chr1	13192	114	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	162	2	3.50618	3.9318850000000003	4.35759	0.00702736	5.87814e-4	0.0557511	0.009801
chr16	1740718	1740818	6371347	0	+	0.6	(0.58,1]	chr16	628855	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MAPK8IP3	ENSG00000138834.15	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	46	2	2.91493	3.9318750000000002	4.94882	0.0354433	0.0259506	0.127188	0.116361
chr10	79223772	79223872	4533599	0	+	0.73	(0.58,1]	chr10	432457	71	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.55596	3.931715	5.30747	0.0534085	0.0196049	0.167062	0.0955413
chr16	46907475	46907569	6442659	0	+	0.585106	(0.58,1]	chr16	639013	1	INTRON	INTRON	GPT2	ENSG00000166123.14	ENST00000340124.9:ENST00000562132.5:ENST00000440783.2	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.55596	3.931715	5.30747	0.0534085	0.0196049	0.167062	0.0955413
chr11	68349534	68349633	4882453	0	+	0.606061	(0.58,1]	chr11	470548	9	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	61	2	3.19823	3.9311949999999998	4.66416	0.0287301	0.0144381	0.115888	0.0833845
chr9	124334103	124334202	4236272	0	+	0.555556	(0.523,0.58]	chr9	402147	63	INTRON	INTRON	NEK6	ENSG00000119408.17	ENST00000373603.5:ENST00000540326.5:ENST00000320246.10:ENST00000373600.7:ENST00000545174.5:ENST00000444973.5:ENST00000454453.5:ENST00000425237.5:ENST00000546191.5:ENST00000422297.5:ENST00000539416.5:ENST00000394199.6	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.46839	3.9308300000000003	5.39327	0.0683019	0.0277354	0.193274	0.112851
chr16	85582437	85582537	6518897	0	+	0.65	(0.58,1]	chr16	646396	257	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.38295	3.93067	5.47839	0.0730701	0.0145198	0.199669	0.0823104
chr1	246143180	246143280	702214	0	-	0.43	(0.419,0.45]	chr1	82410	469	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	68	2	2.82113	3.930585	5.04004	0.0733896	0.0137308	0.17026	0.0814223
chr11	87110878	87110978	4911115	0	+	0.42	(0.419,0.45]	chr11	474124	191	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000529023.5:ENST00000526733.5:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5:ENST00000531800.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	55	2	3.23773	3.93023	4.62273	0.103601	0.0178095	0.197541	0.0943752
chr16	16274427	16274511	6408429	0	+	0.428571	(0.419,0.45]	chr16	633349	4	SS5_PROX	SS5_PROX:INTRON	NOMO3	ENSG00000103226.19	ENST00000676846.1:ENST00000399336.9:ENST00000677912.1:ENST00000677777.1:ENST00000678192.1:ENST00000678393.1:ENST00000678538.1:ENST00000679086.1:ENST00000574894.2:ENST00000678080.1:ENST00000677260.1:ENST00000676550.1:ENST00000263012.10:ENST00000575225.5:ENST00000677781.1:ENST00000677163.1:ENST00000678148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	55	2	3.23773	3.93023	4.62273	0.103601	0.0178095	0.197541	0.0943752
chr2	111422309	111422409	1252859	0	-	0.44	(0.419,0.45]	chr2	134896	440	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1	lncRNA	lncRNA	lncRNA	lncRNA	1	55	2	3.23773	3.93023	4.62273	0.103601	0.0178095	0.197541	0.0943752
chr21	34756761	34756861	7615955	0	+	0.45	(0.419,0.45]	chr21	795408	85	INTRON	INTRON	LINC01426	ENSG00000234380.2	ENST00000420877.1	lncRNA	lncRNA	lncRNA	lncRNA	1	55	2	3.23773	3.93023	4.62273	0.103601	0.0178095	0.197541	0.0943752
chr11	70766865	70766965	5061950	0	-	0.38	(0.36,0.39]	chr11	492701	490	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	2.61656	3.9298650000000004	5.24317	0.057025	0.0433841	0.173546	0.138813
chr22	32814004	32814104	7717749	0	+	0.38	(0.36,0.39]	chr22	807776	115	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.61656	3.9298650000000004	5.24317	0.057025	0.0433841	0.173546	0.138813
chr16	78953818	78953918	6503957	0	+	0.38	(0.36,0.39]	chr16	645717	1735	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	54	2	3.22776	3.92973	4.6317	0.0950937	0.0175762	0.189021	0.0933129
chr13	113059294	113059393	5656230	0	+	0.59596	(0.58,1]	chr13	555189	45	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	2	122	2	3.79235	3.9295649999999998	4.06678	0.00544536	0.00302484	0.0486855	0.0305643
chr3	37863977	37864077	1443283	0	+	0.61	(0.58,1]	chr3	153956	13	INTRON	INTRON	CTDSPL	ENSG00000144677.15	ENST00000273179.10:ENST00000443503.6:ENST00000435525.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	76	2	2.35391	3.92944	5.50497	0.0600041	0.00187297	0.158506	0.0219434
chr16	81563476	81563576	6508928	0	+	0.51	(0.485,0.523]	chr16	645911	676	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	3.07448	3.9293699999999996	4.78426	0.0660335	0.0214987	0.162385	0.10537
chr6	169696263	169696362	3304857	0	-	0.515152	(0.485,0.523]	chr6	319967	8	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1:ENST00000474018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	50	2	3.07448	3.9293699999999996	4.78426	0.0660335	0.0214987	0.162385	0.10537
chr12	19197524	19197624	5180865	0	+	0.39	(0.36,0.39]	chr12	504123	647	INTRON	INTRON	PLEKHA5	ENSG00000052126.15	ENST00000429027.7:ENST00000540972.5:ENST00000299275.10:ENST00000539256.5:ENST00000538714.5:ENST00000535357.5:ENST00000538034.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	73	2	2.80898	3.929235	5.04949	0.0563927	0.0175699	0.154188	0.0933029
chr2	131067763	131067863	1271885	0	-	0.33	(0.29,0.33]	chr2	137243	117	INTRON	INTRON	FAM168B	ENSG00000152102.18	ENST00000389915.4:ENST00000409185.5	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.78168	3.92922	5.07676	0.0412683	0.0393252	0.143321	0.136301
chr6	131836784	131836884	3008309	0	+	0.37	(0.36,0.39]	chr6	294175	103	INTRON	INTRON	ENPP1	ENSG00000197594.14	ENST00000486853.1:ENST00000647893.1:ENST00000513998.5:ENST00000650507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	267	2	3.2731	3.929145	4.58519	0.00401098	0.00246685	0.0410388	0.0266104
chr22	38291266	38291362	7810673	0	-	0.59375	(0.58,1]	chr22	818864	7	UTR3	UTR3:EXON_MRNA	CSNK1E	ENSG00000213923.13	ENST00000359867.7:ENST00000396832.6	protein_coding	protein_coding	protein_coding	protein_coding	6	313	2	3.92326	3.928855	3.93445	0.00180168	2.5756e-4	0.0263695	0.00545201
chr16	24958689	24958785	6570504	0	-	0.510417	(0.485,0.523]	chr16	655750	13	INTRON	INTRON	ARHGAP17	ENSG00000140750.17	ENST00000289968.11:ENST00000303665.9:ENST00000575656.5:ENST00000575975.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	50	2	2.7365	3.9287099999999997	5.12092	0.0423471	0.0414411	0.149195	0.136301
chr21	42984051	42984151	7622836	0	+	0.49	(0.485,0.523]	chr21	796502	90	INTRON	INTRON	PKNOX1	ENSG00000160199.15	ENST00000432907.6:ENST00000418336.6:ENST00000291547.10:ENST00000480179.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	2.7365	3.9287099999999997	5.12092	0.0423471	0.0414411	0.149195	0.136301
chr1	27489885	27489985	431250	0	-	0.75	(0.58,1]	chr1	50975	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.83384	3.92849	5.02314	0.0529065	0.00638322	0.14912	0.0501889
chr11	70688101	70688200	5061160	0	-	0.616162	(0.58,1]	chr11	492688	181	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	64	2	2.15496	3.928435	5.70191	0.0548868	0.00964351	0.168717	0.0659937
chr2	235537235	235537335	1062970	0	+	0.7	(0.58,1]	chr2	115656	123	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	64	2	2.15496	3.928435	5.70191	0.0548868	0.00964351	0.168717	0.0659937
chr1	228155457	228155556	358141	0	+	0.59596	(0.58,1]	chr1	40434	51	INTRON	INTRON	GJC2	ENSG00000198835.4	ENST00000366714.3	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.09402	3.9284299999999996	4.76284	0.0471737	0.0174733	0.143232	0.0928044
chr4	1326639	1326736	1995305	0	+	0.649485	(0.58,1]	chr4	203264	27	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	3.09402	3.9284299999999996	4.76284	0.0471737	0.0174733	0.143232	0.0928044
chr6	35494499	35494599	3125640	0	-	0.64	(0.58,1]	chr6	304825	74	INTRON	INTRON	TEAD3	ENSG00000007866.22	ENST00000338863.13:ENST00000402886.9:ENST00000639578.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	3.09402	3.9284299999999996	4.76284	0.0471737	0.0174733	0.143232	0.0928044
chr2	235523223	235523323	1062828	0	+	0.55	(0.523,0.58]	chr2	115651	280	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	68	2	2.19842	3.927955	5.65749	0.0551586	0.0182707	0.169218	0.0921579
chr17	17736653	17736753	6689402	0	+	0.44	(0.419,0.45]	chr17	671344	121	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.7644	3.927865	5.09133	0.0586308	0.0447981	0.155565	0.154539
chr9	69134401	69134501	4164387	0	+	0.55	(0.523,0.58]	chr9	395756	109	INTRON	INTRON	TJP2	ENSG00000119139.21	ENST00000643713.1:ENST00000606364.5:ENST00000648087.1:ENST00000423935.6:ENST00000647986.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	148	2	3.58927	3.92634	4.26341	0.00656975	0.00569356	0.0510026	0.0497715
chr16	68085916	68086016	6474714	0	+	0.56	(0.523,0.58]	chr16	643037	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000261864:NFATC3	ENSG00000261864.1:ENSG00000072736.19	ENST00000548144.1:ENST00000563319.5:ENST00000569766.5:ENST00000553077.5:ENST00000566301.5:ENST00000549350.5:ENST00000566893.5:ENST00000575270.5:ENST00000561714.5:ENST00000346183.8:ENST00000568466.6:ENST00000539828.6:ENST00000562171.1:ENST00000349223.9:ENST00000329524.8:ENST00000379165.8:ENST00000562926.5:ENST00000570212.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:nonsense_mediated_decay:lncRNA:processed_transcript	1	50	2	2.68276	3.926225	5.16969	0.0464998	0.0387762	0.156036	0.131324
chr7	216759	216859	3305822	0	+	0.56	(0.523,0.58]	chr7	320161	74	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	3	179	2	3.72301	3.926215	4.12942	0.015164	4.55982e-4	0.0844216	0.0082115
chr19	35003424	35003524	7244894	0	+	0.62	(0.58,1]	chr19	742073	2	INTRON	INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	131	2	3.52722	3.925865	4.32451	0.00611467	0.00317254	0.0489549	0.0360488
chr1	17671188	17671288	54923	0	+	0.63	(0.58,1]	chr1	5603	62	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	74	2	2.18459	3.925785	5.66698	0.0341377	0.0102927	0.134338	0.0684871
chr5	134779476	134779572	2538513	0	+	0.427083	(0.419,0.45]	chr5	251865	14	INTRON	INTRON	DDX46	ENSG00000145833.16	ENST00000628477.2:ENST00000452510.7:ENST00000507392.5:ENST00000354283.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	73	2	2.1235	3.92572	5.72794	0.0693342	0.0242188	0.194077	0.106588
chr16	87918162	87918261	6657547	0	-	0.484848	(0.45,0.485]	chr16	666059	129	INTRON	INTRON	CA5A	ENSG00000174990.8	ENST00000649158.1:ENST00000648177.1:ENST00000649794.3:ENST00000648022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	83	2	1.97875	3.9255899999999997	5.87243	0.0598536	0.0143887	0.177269	0.0821732
chr9	133801994	133802093	4428411	0	-	0.606061	(0.58,1]	chr9	423268	38	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	2	115	2	3.5406	3.925325	4.31005	0.0154024	6.7911e-4	0.0849828	0.0108488
chr10	131959436	131959536	4616622	0	+	0.58	(0.523,0.58]	chr10	441116	36	UTR3	UTR3:EXON_MRNA	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	67	2	2.68048	3.925085	5.16969	0.0387762	0.020416	0.131324	0.102668
chr1	61118727	61118827	146467	0	+	0.47	(0.45,0.485]	chr1	17144	65	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	581	2	3.80471	3.92499	4.04527	0.00277868	2.07646e-4	0.0333684	0.00464072
chr3	5169203	5169303	1398859	0	+	0.29	[0,0.29]	chr3	149795	403	INTRON	INTRON	ARL8B	ENSG00000134108.14	ENST00000429403.5:ENST00000256496.8:ENST00000455168.5:ENST00000444332.1:ENST00000419534.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	56	2	2.5799	3.9249599999999996	5.27002	0.0797411	0.0048238	0.176933	0.0417661
chr13	113047539	113047638	5656110	0	+	0.515152	(0.485,0.523]	chr13	555180	3	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	2.88614	3.924875	4.96361	0.0583792	0.0112713	0.155373	0.071709
chr7	29196074	29196171	3334303	0	+	0.391753	(0.39,0.419]	chr7	322839	7	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5:ENST00000222792.11:ENST00000409350.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	71	2	2.24864	3.924795	5.60095	0.0544427	0.0263614	0.167824	0.110638
chr7	102047741	102047841	3436292	0	+	0.33	(0.29,0.33]	chr7	332534	192	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5:ENST00000606749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	67	2	2.53362	3.9244	5.31518	0.0288318	0.0287513	0.123764	0.116067
chr2	239342686	239342786	1392137	0	-	0.59	(0.58,1]	chr2	148752	182	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	55	2	2.7038	3.924385	5.14497	0.0648563	0.00474658	0.162218	0.0413976
chr12	26531350	26531450	5398537	0	-	0.33	(0.29,0.33]	chr12	528527	357	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	3.05751	3.92425	4.79099	0.061706	0.0226356	0.158854	0.108193
chr4	73134220	73134319	2248737	0	-	0.323232	(0.29,0.33]	chr4	226858	86	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000561029.1:ENST00000514252.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	3.05751	3.92425	4.79099	0.061706	0.0226356	0.158854	0.108193
chr7	77709635	77709735	3400439	0	+	0.42	(0.419,0.45]	chr7	328497	119	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.7072600000000002	3.9238800000000005	5.1405	0.0550015	0.0496323	0.160725	0.153337
chr1	89874940	89875040	181240	0	+	0.38	(0.36,0.39]	chr1	19585	279	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.85025	3.923485	4.99672	0.0604395	0.0373341	0.158506	0.139793
chr2	3292606	3292706	1081033	0	-	0.57	(0.523,0.58]	chr2	117633	99	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	61	2	2.70025	3.9231350000000003	5.14602	0.0763549	0.00734367	0.174544	0.0550721
chr10	75841482	75841582	4524582	0	+	0.45	(0.419,0.45]	chr10	432282	581	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	78	2	3.02953	3.92312	4.81671	0.08258	0.0111596	0.179396	0.071709
chr19	947805	947905	7185324	0	+	0.69	(0.58,1]	chr19	730741	147	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	58	2	3.02751	3.9230650000000002	4.81862	0.0385189	0.0102696	0.131324	0.0678072
chr10	79219373	79219473	4533555	0	+	0.43	(0.419,0.45]	chr10	432457	27	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	2.21736	3.922705	5.62805	0.058705	0.0280406	0.176098	0.113651
chr1	94462497	94462596	187294	0	+	0.373737	(0.36,0.39]	chr1	20299	35	INTRON	INTRON	ABCD3	ENSG00000117528.14	ENST00000370214.9:ENST00000647998.2:ENST00000315713.5:ENST00000468860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.9032	3.92257	4.94194	0.064883	0.0337607	0.162218	0.133139
chr16	81563676	81563776	6508930	0	+	0.49	(0.485,0.523]	chr16	645911	678	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	2.70247	3.922475	5.14248	0.0759932	0.00761903	0.174411	0.0561937
chr7	129944584	129944684	3707657	0	-	0.45	(0.419,0.45]	chr7	356243	70	INTRON	INTRON	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000473814.6:ENST00000496698.5:ENST00000472396.5:ENST00000480245.5:ENST00000490974.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	157	2	3.77132	3.922465	4.07361	0.0109421	0.00544312	0.0708586	0.0454065
chr17	15468618	15468717	6860121	0	-	0.373737	(0.36,0.39]	chr17	695071	11	INTRON	INTRON	TVP23C-CDRT4:CDRT4	ENSG00000259024.6:ENSG00000239704.11	ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	52	2	2.79528	3.922385	5.04949	0.0563927	0.0413701	0.154188	0.148333
chr8	22377027	22377127	3770118	0	+	0.38	(0.36,0.39]	chr8	362721	89	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.79528	3.922385	5.04949	0.0563927	0.0413701	0.154188	0.148333
chr16	89307238	89307338	6659884	0	-	0.59	(0.58,1]	chr16	666665	15	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1:ENST00000647539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	185	2	3.7779	3.9223399999999997	4.06678	0.00544536	4.271e-4	0.0486855	0.00779962
chr6	138465551	138465651	3273796	0	-	0.35	(0.33,0.36]	chr6	316903	180	INTRON	INTRON	NHSL1	ENSG00000135540.12	ENST00000427025.6:ENST00000343505.10:ENST00000342260.9:ENST00000426841.6:ENST00000491526.6:ENST00000533765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	100	2	3.07093	3.9222400000000004	4.77355	0.0735809	0.0054946	0.17026	0.0454065
chr17	14397672	14397771	6683513	0	+	0.383838	(0.36,0.39]	chr17	670768	1	INTRON	INTRON	ENSG00000230647	ENSG00000230647.2	ENST00000436469.1:ENST00000655690.1	lncRNA	lncRNA	lncRNA	lncRNA	7	128	2	1.74003	3.922205	6.10438	0.0564773	0.0117824	0.172107	0.073726
chr3	13197826	13197926	1691120	0	-	0.65	(0.58,1]	chr3	176566	333	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.1491	3.9221	4.6951	0.0521567	0.0154006	0.148503	0.0869771
chr6	1684224	1684323	3079712	0	-	0.59596	(0.58,1]	chr6	299464	39	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000533279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	46	2	3.1491	3.9221	4.6951	0.0521567	0.0154006	0.148503	0.0869771
chr19	47349352	47349452	7277330	0	+	0.69	(0.58,1]	chr19	747537	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DHX34	ENSG00000134815.19	ENST00000328771.9	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.78186	3.92128	5.0607	0.0342923	0.029633	0.13449	0.116079
chr9	134366181	134366281	4261085	0	+	0.66	(0.58,1]	chr9	406311	392	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	64	2	3.35086	3.92101	4.49116	0.0218816	0.0207449	0.102713	0.101015
chr4	66008546	66008646	2048100	0	+	0.36	(0.33,0.36]	chr4	209641	48	INTRON	INTRON	ENSG00000249413:ENSG00000272304	ENSG00000249413.2:ENSG00000272304.1	ENST00000508572.1:ENST00000513540.1	lncRNA	lncRNA	lncRNA	lncRNA	1	52	2	3.13306	3.9210000000000003	4.70894	0.0798152	0.0206439	0.176933	0.102713
chr17	40826359	40826459	6734820	0	+	0.4	(0.39,0.419]	chr17	677416	67	INTRON	INTRON	KRT10-AS1	ENSG00000167920.11	ENST00000436612.5:ENST00000301665.8:ENST00000668620.1:ENST00000692645.1:ENST00000666187.1:ENST00000654043.1:ENST00000662074.1	lncRNA	lncRNA	lncRNA	lncRNA	1	52	2	2.7933500000000002	3.92075	5.04815	0.0572698	0.0415789	0.154343	0.148959
chr6	36599083	36599162	2906274	0	+	0.417722	(0.39,0.419]	chr6	285206	1	SS5_PROX	SS5_PROX:INTRON	SRSF3	ENSG00000112081.17	ENST00000613941.4:ENST00000373715.11:ENST00000339436.11:ENST00000477442.6:ENST00000620941.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	2.7933500000000002	3.92075	5.04815	0.0572698	0.0415789	0.154343	0.148959
chr11	65556150	65556248	5051528	0	-	0.479592	(0.45,0.485]	chr11	491121	14	INTRON	INTRON	LTBP3	ENSG00000168056.18	ENST00000530866.6:ENST00000301873.11:ENST00000526825.6:ENST00000689505.1:ENST00000322147.8:ENST00000528516.5:ENST00000526927.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	69	2	2.19184	3.92053	5.64922	0.0575893	0.020599	0.17499	0.0982852
chr8	28891399	28891484	3785492	0	+	0.458824	(0.45,0.485]	chr8	364666	2	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000558662.5:ENST00000519662.5:ENST00000397358.7:ENST00000560599.5:ENST00000523613.5:ENST00000560357.5:ENST00000521516.5:ENST00000519047.5:ENST00000560269.1:ENST00000355231.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	51	2	3.12941	3.920255	4.7111	0.0781398	0.0199365	0.175203	0.100864
chr4	151292643	151292743	2352210	0	-	0.27	[0,0.29]	chr4	235111	265	INTRON	INTRON	SH3D19	ENSG00000109686.19	ENST00000604030.7	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.08401	3.92014	4.75627	0.050276	0.0199046	0.148161	0.100864
chr3	65418339	65418438	1809633	0	-	0.343434	(0.33,0.36]	chr3	187193	165	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.58715	3.9200349999999995	5.25292	0.0587055	0.0384256	0.176098	0.131324
chr16	68319334	68319433	6476835	0	+	0.525253	(0.523,0.58]	chr16	643277	4	INTRON	INTRON	PRMT7	ENSG00000132600.18	ENST00000686904.1:ENST00000562381.7:ENST00000689486.1:ENST00000693200.1:ENST00000685141.1:ENST00000562050.6:ENST00000565745.6:ENST00000685109.1:ENST00000689637.1:ENST00000692867.1:ENST00000693670.1:ENST00000692760.1:ENST00000687654.1:ENST00000441236.3:ENST00000675132.1:ENST00000688470.1:ENST00000691833.1:ENST00000690432.1:ENST00000691804.1:ENST00000691961.1:ENST00000690932.1:ENST00000692632.1:ENST00000687444.1:ENST00000692283.1:ENST00000569571.5:ENST00000692621.1:ENST00000566341.5:ENST00000686053.1:ENST00000692966.1:ENST00000691663.1:ENST00000564050.6:ENST00000449359.7:ENST00000569047.7:ENST00000693309.1:ENST00000690311.1:ENST00000565356.5:ENST00000564441.6:ENST00000563520.5:ENST00000687558.1:ENST00000339507.9:ENST00000688969.1:ENST00000568975.5:ENST00000563562.5:ENST00000561806.5:ENST00000562456.1:ENST00000566430.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	87	2	2.48549	3.9200049999999997	5.35452	0.0582885	0.00453096	0.155373	0.0400651
chr8	122878131	122878231	3910627	0	+	0.35	(0.33,0.36]	chr8	373489	142	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6:ENST00000534247.1	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	2.56404	3.919805	5.27557	0.0954498	0.00707628	0.189038	0.0540197
chr4	128862846	128862945	2132117	0	+	0.535354	(0.523,0.58]	chr4	216572	7	UTR3	UTR3:EXON_MRNA:INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.53438	3.919765	5.30515	0.0957531	0.00509102	0.189038	0.0433513
chrX	48939333	48939432	8040868	0	-	0.525253	(0.523,0.58]	chrX	838808	26	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	2.53438	3.919765	5.30515	0.0957531	0.00509102	0.189038	0.0433513
chr1	23392087	23392186	424236	0	-	0.414141	(0.39,0.419]	chr1	49807	43	INTRON	INTRON	TCEA3	ENSG00000204219.11	ENST00000450454.7:ENST00000476978.2	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	2.64369	3.91974	5.19579	0.0469937	0.0250481	0.143232	0.114418
chr11	110231673	110231770	5123801	0	-	0.371134	(0.36,0.39]	chr11	497283	24	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000645312.1:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000527537.5:ENST00000532461.5:ENST00000533961.1:ENST00000530131.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	53	2	2.5517	3.91974	5.28778	0.0637554	0.0407706	0.184651	0.135868
chr15	31335155	31335254	6072933	0	+	0.454545	(0.45,0.485]	chr15	596672	70	INTRON	INTRON	KLF13	ENSG00000169926.11	ENST00000307145.4:ENST00000558921.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	68	2	2.3351	3.9196600000000004	5.50422	0.0438295	0.0257993	0.153511	0.109555
chr10	110896487	110896587	4584843	0	+	0.47	(0.45,0.485]	chr10	438444	4	SS5_PROX	SS5_PROX:INTRON	PDCD4	ENSG00000150593.18	ENST00000393104.6:ENST00000280154.12:ENST00000462577.5:ENST00000498367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.62955	3.919305	5.20906	0.0530416	0.0399616	0.167062	0.133954
chr3	172311281	172311381	1630199	0	+	0.48	(0.45,0.485]	chr3	170620	4	SS5_PROX	SS5_PROX:INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	51	2	2.62955	3.919305	5.20906	0.0530416	0.0399616	0.167062	0.133954
chr17	4840133	4840233	6671954	0	+	0.39	(0.36,0.39]	chr17	668609	61	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	2.73813	3.9192649999999998	5.1004	0.0526991	0.0459393	0.154743	0.14912
chr14	60817821	60817921	5834150	0	+	0.36	(0.33,0.36]	chr14	570736	53	INTRON	INTRON	MNAT1	ENSG00000020426.11	ENST00000261245.9:ENST00000539616.6:ENST00000556525.1:ENST00000554002.5:ENST00000554641.1:ENST00000557134.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	51	2	2.83079	3.9186050000000003	5.00642	0.0542065	0.0376711	0.151733	0.140049
chr6	144377457	144377557	3020785	0	+	0.35	(0.33,0.36]	chr6	295148	328	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1:ENST00000628146.2:ENST00000421035.2	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.83079	3.9186050000000003	5.00642	0.0542065	0.0376711	0.151733	0.140049
chr19	322735	322835	7303103	0	-	0.6	(0.58,1]	chr19	752407	87	INTRON	INTRON	MIER2	ENSG00000105556.12	ENST00000264819.7	protein_coding	protein_coding	protein_coding	protein_coding	2	124	2	3.68463	3.9185	4.15237	0.00456039	0.00404771	0.0438198	0.0371291
chr9	114156708	114156806	4225712	0	+	0.673469	(0.58,1]	chr9	400740	3	INTRON	INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8	protein_coding	protein_coding	protein_coding	protein_coding	3	74	2	2.48391	3.918025	5.35214	0.0181452	0.0170246	0.0923809	0.0921579
chr11	70781454	70781554	5062096	0	-	0.42	(0.419,0.45]	chr11	492701	636	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	2.64776	3.9179	5.18804	0.0551054	0.051668	0.169163	0.148503
chr13	98278598	98278698	5635017	0	+	0.39	(0.36,0.39]	chr13	553480	334	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	2	143	2	3.68795	3.917865	4.14778	0.0189953	0.00203951	0.0947671	0.0233536
chr1	157013138	157013238	603877	0	-	0.45	(0.419,0.45]	chr1	71589	266	INTRON	INTRON	ARHGEF11	ENSG00000132694.19	ENST00000368194.8:ENST00000361409.2	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	2.74434	3.917835	5.09133	0.0586308	0.0208637	0.155565	0.102883
chr10	87221056	87221155	4723353	0	-	0.414141	(0.39,0.419]	chr10	450862	73	INTRON	INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6	lncRNA	lncRNA	lncRNA	lncRNA	1	52	2	2.7362	3.91763	5.09906	0.0535378	0.0461646	0.155334	0.150319
chr1	212734730	212734829	656986	0	-	0.393939	(0.39,0.419]	chr1	77477	77	UTR3	UTR3:EXON_MRNA:INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	2.62127	3.917355	5.21344	0.0923527	0.00893514	0.188571	0.0620271
chr18	32693278	32693377	7142644	0	-	0.424242	(0.419,0.45]	chr18	726493	57	INTRON	INTRON	KLHL14	ENSG00000197705.10	ENST00000359358.9	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	2.6465	3.9172700000000003	5.18804	0.051668	0.0255963	0.148503	0.115966
chr7	47479303	47479403	3588601	0	-	0.69	(0.58,1]	chr7	346123	262	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.74846	3.9169	5.08534	0.0605281	0.00549379	0.158506	0.0454065
chr10	19382236	19382336	4452657	0	+	0.34	(0.33,0.36]	chr10	426783	296	INTRON	INTRON	MALRD1	ENSG00000204740.11	ENST00000454679.7:ENST00000377266.7	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.93873	3.9167050000000003	4.89468	0.0629186	0.0305837	0.160778	0.126768
chr1	206053565	206053665	323557	0	+	0.34	(0.33,0.36]	chr1	36509	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000285417	ENSG00000285417.1	ENST00000647316.1:ENST00000582596.5	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	1	65	2	2.89559	3.9166800000000004	4.93777	0.0605295	0.0144674	0.158506	0.0833845
chr7	29960142	29960241	3564555	0	-	0.454545	(0.45,0.485]	chr7	343990	44	INTRON	INTRON	SCRN1	ENSG00000136193.17	ENST00000426154.5:ENST00000242059.10:ENST00000425819.6:ENST00000409497.5:ENST00000434476.6:ENST00000421434.5:ENST00000494620.1:ENST00000438497.5:ENST00000409570.3:ENST00000631335.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.49029	3.9166499999999997	5.34301	0.0676934	0.0328801	0.193219	0.122593
chr16	50596299	50596399	6451890	0	+	0.36	(0.33,0.36]	chr16	639902	377	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.77362	3.91641	5.0592	0.0504445	0.041944	0.149108	0.148216
chr16	21512831	21512931	6564768	0	-	0.61	(0.58,1]	chr16	654787	63	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	61	2	2.48056	3.9163500000000004	5.35214	0.0277636	0.0181452	0.12074	0.0921579
chr9	91417670	91417769	4334155	0	-	0.414141	(0.39,0.419]	chr9	414047	64	INTRON	INTRON	NFIL3	ENSG00000165030.4	ENST00000297689.4	protein_coding	protein_coding	protein_coding	protein_coding	2	70	2	2.41984	3.9161900000000003	5.41254	0.0393507	0.0347088	0.143358	0.12648
chr10	131918187	131918287	4616198	0	+	0.56	(0.523,0.58]	chr10	441069	52	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	2.61478	3.9160250000000003	5.21727	0.052707	0.0361597	0.167062	0.127853
chr16	16007215	16007315	6406576	0	+	0.55	(0.523,0.58]	chr16	633005	571	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	2.92656	3.91578	4.905	0.0563605	0.0289226	0.154188	0.124
chr2	46333591	46333691	785004	0	+	0.56	(0.523,0.58]	chr2	89746	353	INTRON	INTRON	EPAS1	ENSG00000116016.14	ENST00000460015.1:ENST00000449347.5:ENST00000263734.5:ENST00000467888.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.86937	3.91567	4.96197	0.0521137	0.0324455	0.148503	0.130548
chr17	57463012	57463112	6761842	0	+	0.54	(0.523,0.58]	chr17	682137	179	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	66	2	2.52319	3.9155699999999998	5.30795	0.0315825	0.0287266	0.123764	0.120781
chr11	68353588	68353687	4882494	0	+	0.646465	(0.58,1]	chr11	470548	50	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	60	2	3.16566	3.91491	4.66416	0.0304114	0.0144381	0.11845	0.0833845
chr3	13026394	13026493	1689400	0	-	0.454545	(0.45,0.485]	chr3	176542	39	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	2.49062	3.914215	5.33781	0.104221	0.0054758	0.19835	0.0454065
chr1	246123898	246123998	702021	0	-	0.39	(0.36,0.39]	chr1	82410	276	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.67862	3.9141000000000004	5.14958	0.0511249	0.0493212	0.1648	0.146207
chr19	15321937	15322037	7342270	0	-	0.41	(0.39,0.419]	chr19	760397	416	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	70	2	2.49838	3.914045	5.32971	0.0390381	0.0336993	0.133139	0.131575
chr1	174003292	174003391	620759	0	-	0.535354	(0.523,0.58]	chr1	73467	98	INTRON	INTRON	RC3H1	ENSG00000135870.12	ENST00000367696.7	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.98158	3.913635	4.84569	0.0610722	0.0258432	0.158506	0.116361
chr11	70743783	70743883	5061719	0	-	0.55	(0.523,0.58]	chr11	492701	259	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.98158	3.913635	4.84569	0.0610722	0.0258432	0.158506	0.116361
chr17	76545269	76545368	6977057	0	-	0.545455	(0.523,0.58]	chr17	712264	77	INTRON	INTRON	CYGB	ENSG00000161544.10	ENST00000589145.1	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.98158	3.913635	4.84569	0.0610722	0.0258432	0.158506	0.116361
chr1	96761446	96761545	190747	0	+	0.373737	(0.36,0.39]	chr1	20672	96	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000460706.5:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	72	2	2.77778	3.9136349999999998	5.04949	0.0563927	0.018802	0.154188	0.0980631
chr16	57375201	57375300	6466016	0	+	0.535354	(0.523,0.58]	chr16	641365	22	INTRON	INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.80981	3.91329	5.01677	0.0482765	0.0364868	0.144601	0.139793
chr2	11580105	11580203	720674	0	+	0.540816	(0.523,0.58]	chr2	84132	13	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000263834.9:ENST00000389825.7:ENST00000381483.6:ENST00000234142.9	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.80981	3.91329	5.01677	0.0482765	0.0364868	0.144601	0.139793
chr6	158255384	158255484	3061069	0	+	0.53	(0.523,0.58]	chr6	297572	227	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	49	2	2.80981	3.91329	5.01677	0.0482765	0.0364868	0.144601	0.139793
chr6	170376698	170376798	3076343	0	+	0.53	(0.523,0.58]	chr6	299174	180	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.80981	3.91329	5.01677	0.0482765	0.0364868	0.144601	0.139793
chr10	14557802	14557902	4633235	0	-	0.63	(0.58,1]	chr10	442809	10	INTRON	INTRON	FAM107B	ENSG00000065809.14	ENST00000181796.7:ENST00000622567.4:ENST00000468747.5:ENST00000378467.8:ENST00000487335.5:ENST00000378465.7:ENST00000378458.6:ENST00000378462.5:ENST00000479731.5:ENST00000468492.5:ENST00000452706.6:ENST00000488576.5:ENST00000442012.5:ENST00000482277.5:ENST00000472095.5:ENST00000471815.5:ENST00000464952.5:ENST00000495292.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	3.20215	3.9130900000000004	4.62403	0.0578275	0.0136092	0.154343	0.0811697
chr9	134366381	134366480	4261087	0	+	0.626263	(0.58,1]	chr9	406311	394	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	3.20215	3.9130900000000004	4.62403	0.0578275	0.0136092	0.154343	0.0811697
chr9	124488587	124488686	4402608	0	-	0.414141	(0.39,0.419]	chr9	419805	52	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.26675	3.91309	4.55943	0.104562	0.01622	0.19835	0.0902823
chr12	124014184	124014281	5348533	0	+	0.628866	(0.58,1]	chr12	523078	14	UTR3	UTR3:EXON_MRNA	ZNF664	ENSG00000179195.16	ENST00000539644.5:ENST00000392404.7:ENST00000538932.6:ENST00000337815.9	protein_coding	protein_coding	protein_coding	protein_coding	6	102	2	1.96056	3.912735	5.86491	0.0306306	0.00707578	0.126932	0.0558168
chr1	17670389	17670489	54915	0	+	0.51	(0.485,0.523]	chr1	5603	54	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	68	2	2.13331	3.912655	5.692	0.0626854	0.0171772	0.181933	0.0895975
chr2	166032260	166032360	1301730	0	-	0.28	[0,0.29]	chr2	139675	162	INTRON	INTRON	SCN1A	ENSG00000144285.23	ENST00000641603.1:ENST00000641575.1:ENST00000641996.1:ENST00000303395.9:ENST00000674923.1:ENST00000635750.1:ENST00000636194.1:ENST00000635776.1:ENST00000637988.1:ENST00000689288.1:ENST00000640036.1:ENST00000375405.7:ENST00000671940.1:ENST00000673490.1:ENST00000637038.1:ENST00000409050.1:ENST00000637968.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	64	2	2.61776	3.912445	5.20713	0.0248721	0.0224516	0.108193	0.10758
chr7	4698060	4698159	3309499	0	+	0.474747	(0.45,0.485]	chr7	320808	148	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.81608	3.9123349999999997	5.00859	0.052901	0.0375071	0.14912	0.139823
chr2	235802096	235802194	1065631	0	+	0.520408	(0.485,0.523]	chr2	115712	22	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	67	2	2.23742	3.912325	5.58723	0.0515447	0.0203514	0.165949	0.0979211
chr16	81667965	81668064	6509986	0	+	0.59596	(0.58,1]	chr16	645961	8	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	5	251	2	3.43288	3.912305	4.39173	0.00527199	1.24203e-4	0.047841	0.00322601
chr22	32803420	32803520	7717643	0	+	0.58	(0.523,0.58]	chr22	807776	9	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.1364	3.912125	4.68785	0.0400336	0.0194172	0.134064	0.0994526
chr9	134329554	134329654	4260718	0	+	0.72	(0.58,1]	chr9	406311	25	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	48	2	2.47204	3.91209	5.35214	0.0623526	0.0181452	0.181127	0.0921579
chr10	102650574	102650673	4576530	0	+	0.656566	(0.58,1]	chr10	437284	9	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1:ENST00000487927.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	2.71042	3.911985	5.11355	0.0396128	0.0271806	0.143388	0.112113
chr16	50598497	50598597	6451912	0	+	0.64	(0.58,1]	chr16	639902	399	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.71042	3.911985	5.11355	0.0396128	0.0271806	0.143388	0.112113
chr21	45425252	45425352	7630515	0	+	0.66	(0.58,1]	chr21	797656	194	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.71042	3.911985	5.11355	0.0396128	0.0271806	0.143388	0.112113
chr9	134341929	134342029	4260842	0	+	0.67	(0.58,1]	chr9	406311	149	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	2.71042	3.911985	5.11355	0.0396128	0.0271806	0.143388	0.112113
chr6	31734263	31734363	3119428	0	-	0.56	(0.523,0.58]	chr6	303330	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000616760.1:ENST00000375784.8	protein_coding	protein_coding	protein_coding	protein_coding	3	180	2	3.50802	3.91175	4.31548	0.005162	0.00264792	0.0472296	0.027979
chr6	24224287	24224387	3108985	0	-	0.45	(0.419,0.45]	chr6	301412	188	INTRON	INTRON	DCDC2	ENSG00000146038.12	ENST00000378454.8	protein_coding	protein_coding	protein_coding	protein_coding	1	77	2	3.26132	3.9109	4.56048	0.0394801	0.0337332	0.133139	0.13291
chr2	200361151	200361250	986504	0	+	0.343434	(0.33,0.36]	chr2	108296	95	INTRON	INTRON	SPATS2L	ENSG00000196141.14	ENST00000439084.5:ENST00000409718.5:ENST00000358677.9:ENST00000409988.7:ENST00000409385.5:ENST00000439395.5:ENST00000444012.5:ENST00000451764.6:ENST00000360760.9:ENST00000423749.5:ENST00000457757.5:ENST00000471601.5:ENST00000428692.5:ENST00000453663.5:ENST00000409140.8:ENST00000459656.5:ENST00000471533.5:ENST00000409397.6:ENST00000619961.4:ENST00000409151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	146	2	3.05142	3.910875	4.77033	0.0481968	3.48103e-4	0.144601	0.00674463
chr3	73027807	73027873	1503041	0	+	0.424242	(0.419,0.45]	chr3	160778	1	EXON_SMALL	EXON_SMALL:INTRON	PPP4R2:RNU7-19P	ENSG00000163605.15:ENSG00000238959.1	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000476505.2:ENST00000459135.1	snRNA	snRNA	snRNA:protein_coding	snRNA:protein_coding:retained_intron:nonsense_mediated_decay	1	53	2	3.06656	3.91073	4.7549	0.0888907	0.0252325	0.183874	0.114921
chr10	34750798	34750898	4671166	0	-	0.51	(0.485,0.523]	chr10	445543	540	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.91537	3.9103950000000003	4.90542	0.0561086	0.0298565	0.154188	0.126732
chr20	36861362	36861461	7557115	0	-	0.515152	(0.485,0.523]	chr20	789159	16	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.91537	3.9103950000000003	4.90542	0.0561086	0.0298565	0.154188	0.126732
chr10	35415742	35415842	4476467	0	+	0.55	(0.523,0.58]	chr10	428113	205	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	2.6197	3.91037	5.20104	0.0853454	0.00648051	0.181766	0.0503748
chr12	116840858	116840958	5335873	0	+	0.49	(0.485,0.523]	chr12	520799	42	INTRON	INTRON	RNFT2	ENSG00000135119.15	ENST00000407967.7:ENST00000392549.7:ENST00000257575.9:ENST00000547718.5:ENST00000551251.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	2.85817	3.91028	4.96239	0.0518747	0.0334631	0.148503	0.133139
chr5	75353102	75353202	2456081	0	+	0.34	(0.33,0.36]	chr5	245323	11	INTRON	INTRON	HMGCR	ENSG00000113161.17	ENST00000511206.5:ENST00000679456.1:ENST00000680160.1:ENST00000287936.9:ENST00000681567.1:ENST00000343975.9:ENST00000680940.1:ENST00000681271.1:ENST00000681410.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	199	2	3.27217	3.910275	4.54838	0.00571458	0.00377571	0.0467736	0.0396337
chr2	74031207	74031307	834311	0	+	0.6	(0.58,1]	chr2	94249	277	INTRON	INTRON	TET3	ENSG00000187605.16	ENST00000409262.8:ENST00000305799.8	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.38295	3.910235	5.43752	0.0730701	0.0156166	0.199669	0.0849828
chr2	3458181	3458193	711012	0	+	0.666667	(0.58,1]	chr2	83171	1	SS5_PROX	SS5_PROX:INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000479955.5:ENST00000497597.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	54	2	2.50987	3.9101150000000002	5.31036	0.0865901	0.00312721	0.182221	0.0311915
chr12	6768388	6768482	5165700	0	+	0.574468	(0.523,0.58]	chr12	502315	13	INTRON	INTRON	PTMS	ENSG00000159335.18	ENST00000540667.5:ENST00000309083.8:ENST00000389462.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	63	2	2.918	3.91011	4.90222	0.0558053	0.0125132	0.154188	0.0765738
chr17	17824405	17824504	6865767	0	-	0.575758	(0.523,0.58]	chr17	695923	4	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	2.918	3.91011	4.90222	0.0558053	0.0125132	0.154188	0.0765738
chr1	1051915	1051985	1281	0	+	0.628571	(0.58,1]	chr1	280	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	2	115	2	3.77454	3.91005	4.04556	0.00981158	0.00148416	0.0668871	0.0186585
chr5	10708671	10708771	2612123	0	-	0.51	(0.485,0.523]	chr5	260254	247	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	66	2	2.51105	3.90971	5.30837	0.0314138	0.029737800000000002	0.126591	0.12069
chr16	89834133	89834232	6525480	0	+	0.585859	(0.58,1]	chr16	647498	50	INTRON	INTRON	SPIRE2	ENSG00000204991.11	ENST00000564878.5:ENST00000378247.8:ENST00000393062.6:ENST00000563972.1:ENST00000566337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	96	2	3.15491	3.909535	4.66416	0.0144381	0.0142368	0.0833845	0.0817691
chr2	63023644	63023744	817163	0	+	0.46	(0.45,0.485]	chr2	92205	265	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000496857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	3.1756	3.90953	4.64346	0.0850039	0.0180699	0.181766	0.0953579
chr6	154501569	154501669	3297459	0	-	0.46	(0.45,0.485]	chr6	319123	232	INTRON	INTRON	CNKSR3	ENSG00000153721.19	ENST00000607772.6	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.1756	3.90953	4.64346	0.0850039	0.0180699	0.181766	0.0953579
chr6	1898516	1898615	3081858	0	-	0.525253	(0.523,0.58]	chr6	299482	1556	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	49	2	3.03457	3.909205	4.78384	0.0663135	0.0231444	0.162385	0.109883
chrX	133656933	133657033	8112725	0	-	0.52	(0.485,0.523]	chrX	845480	600	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000692074.1:ENST00000667662.1:ENST00000666017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	175	2	3.79778	3.909185	4.02059	0.0088843599999999991	0.00121976	0.0635397	0.0163074
chr16	89315455	89315553	6659968	0	-	0.622449	(0.58,1]	chr16	666672	15	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	54	2	2.56085	3.9090800000000003	5.25731	0.0803939	0.00358178	0.177452	0.0342681
chr17	57506846	57506946	6762282	0	+	0.47	(0.45,0.485]	chr17	682142	192	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1:ENST00000674898.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	50	2	2.75654	3.90896	5.06138	0.0492008	0.0419966	0.149115	0.146142
chr19	934139	934239	7185187	0	+	0.68	(0.58,1]	chr19	730741	10	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	61	2	2.37998	3.9087500000000004	5.43752	0.0345705	0.0156166	0.135397	0.0849828
chr17	30394910	30395010	6710956	0	+	0.42	(0.419,0.45]	chr17	673915	93	INTRON	INTRON	CPD	ENSG00000108582.12	ENST00000225719.9:ENST00000543464.6	protein_coding	protein_coding	protein_coding	protein_coding	2	153	2	3.08499	3.90871	4.73243	0.0509743	4.69186e-4	0.148503	0.00833075
chr5	139660141	139660239	2549762	0	+	0.622449	(0.58,1]	chr5	253172	1	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1:ENST00000509238.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.55596	3.90867	5.26138	0.0534085	0.021217	0.167062	0.0996078
chrX	1597410	1597509	7830218	0	+	0.686869	(0.58,1]	chrX	822080	15	INTRON	INTRON	AKAP17A	ENSG00000197976.12	ENST00000313871.9:ENST00000474361.6:ENST00000381261.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.55596	3.90867	5.26138	0.0534085	0.021217	0.167062	0.0996078
chr22	15819068	15819165	7682915	0	+	0.515464	(0.485,0.523]	chr22	803567	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000383038.7:ENST00000447898.5:ENST00000607933.1	lncRNA	lncRNA	lncRNA	lncRNA	4	239	2	3.60748	3.9086	4.20972	0.00856668	3.7062e-4	0.0622313	0.00705955
chr12	775352	775451	5148853	0	+	0.353535	(0.33,0.36]	chr12	500570	207	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.51922	3.9083799999999997	5.29754	0.0659899	0.0360263	0.189025	0.127853
chr11	16982879	16982979	5011397	0	-	0.52	(0.485,0.523]	chr11	484333	695	INTRON	INTRON	PLEKHA7	ENSG00000166689.17	ENST00000531066.6:ENST00000355661.7:ENST00000532079.1:ENST00000529213.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.97038	3.908245	4.84611	0.0608067	0.0267011	0.158506	0.118343
chr1	3472481	3472577	5836	0	+	0.552083	(0.523,0.58]	chr1	1236	3	INTRON	INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5:ENST00000464620.1:ENST00000418137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	62	2	2.84901	3.9080749999999997	4.96714	0.0617545	0.0108948	0.158869	0.0706366
chrX	20236606	20236705	7995123	0	-	0.383838	(0.36,0.39]	chrX	836359	7	INTRON	INTRON	RPS6KA3	ENSG00000177189.14	ENST00000379565.9:ENST00000643085.1:ENST00000645270.1:ENST00000643402.1:ENST00000644368.1:ENST00000647265.1:ENST00000645268.1:ENST00000646610.1:ENST00000643337.1:ENST00000642835.1:ENST00000644893.1:ENST00000438357.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	107	2	1.84149	3.9077200000000003	5.97395	0.056307	0.0145438	0.171933	0.0823572
chr19	45043588	45043687	7270043	0	+	0.50505	(0.485,0.523]	chr19	746627	29	INTRON	INTRON	CLASRP	ENSG00000104859.15	ENST00000221455.8:ENST00000391953.8:ENST00000591410.5:ENST00000592056.5:ENST00000391952.7:ENST00000588936.5:ENST00000544944.6:ENST00000587112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	66	2	2.38071	3.9076199999999996	5.43453	0.0388914	0.0258944	0.142578	0.109555
chr19	6708429	6708523	7322846	0	-	0.5	(0.485,0.523]	chr19	756501	1	INTRON	INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695654.1:ENST00000695692.1:ENST00000695652.1:ENST00000695655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	176	2	3.78195	3.907445	4.03294	0.0136284	6.22884e-4	0.0797406	0.0101764
chr11	70773760	70773860	5062019	0	-	0.38	(0.36,0.39]	chr11	492701	559	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	2.48379	3.907425	5.33106	0.0714535	0.0383628	0.198579	0.131324
chr8	18866873	18866973	3950663	0	-	0.38	(0.36,0.39]	chr8	377276	126	INTRON	INTRON	PSD3	ENSG00000156011.18	ENST00000327040.13:ENST00000440756.4:ENST00000523619.5	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.48379	3.907425	5.33106	0.0714535	0.0383628	0.198579	0.131324
chr1	204537782	204537856	322843	0	+	0.391892	(0.39,0.419]	chr1	36380	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1:ENST00000507825.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	70	2	2.24864	3.90691	5.56518	0.0544427	0.027797	0.167824	0.112962
chr22	36010945	36011045	7805651	0	-	0.39	(0.36,0.39]	chr22	817798	494	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.61656	3.9068449999999997	5.19713	0.057025	0.0462258	0.173546	0.143138
chr9	129497859	129497955	4250754	0	+	0.645833	(0.58,1]	chr9	404722	4	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	184	2	3.81866	3.90656	3.99446	0.0063152	3.74784e-4	0.0524685	0.00712433
chr6	2034938	2035037	3083228	0	-	0.515152	(0.485,0.523]	chr6	299499	736	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000530459.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	3.30597	3.906155	4.50634	0.0939553	0.012958	0.188571	0.0778899
chrX	65516815	65516910	8055042	0	-	0.4	(0.39,0.419]	chrX	840752	15	INTRON	INTRON	LAS1L	ENSG00000001497.18	ENST00000677056.1:ENST00000677969.1:ENST00000374811.8:ENST00000374807.9:ENST00000677834.1:ENST00000484069.1:ENST00000374804.9:ENST00000677986.1:ENST00000677087.1:ENST00000679056.1:ENST00000679261.1:ENST00000678074.1:ENST00000678705.1:ENST00000679277.1:ENST00000677154.1:ENST00000678547.1:ENST00000678956.1:ENST00000679116.1:ENST00000678848.1:ENST00000678173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	3.04938	3.905975	4.76257	0.0822354	0.0253994	0.179396	0.115502
chr2	11362510	11362609	1089491	0	-	0.393939	(0.39,0.419]	chr2	118760	41	INTRON	INTRON	ENSG00000230952	ENSG00000230952.1	ENST00000430897.1	lncRNA	lncRNA	lncRNA	lncRNA	1	53	2	2.48186	3.9057850000000003	5.32971	0.0717596	0.0390381	0.199212	0.131575
chr16	8639587	8639676	6381015	0	+	0.662921	(0.58,1]	chr16	631100	5	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	METTL22	ENSG00000067365.15	ENST00000163678.11:ENST00000381920.8:ENST00000561758.5:ENST00000568967.5:ENST00000572956.5:ENST00000561993.5:ENST00000563501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	61	2	3.23007	3.9051600000000004	4.58025	0.0271644	0.0172566	0.112113	0.0923809
chr19	18466813	18466912	7347859	0	-	0.676768	(0.58,1]	chr19	761486	5	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	61	2	3.23007	3.9051600000000004	4.58025	0.0271644	0.0172566	0.112113	0.0923809
chr11	68350720	68350819	4882465	0	+	0.535354	(0.523,0.58]	chr11	470548	21	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	65	2	3.04682	3.90486	4.7629	0.0459721	0.0167014	0.142664	0.0917029
chr10	79116116	79116216	4532516	0	+	0.61	(0.58,1]	chr10	432420	465	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	2.9908	3.90471	4.81862	0.0409591	0.0102696	0.136191	0.0678072
chr16	75240119	75240217	6644515	0	-	0.642857	(0.58,1]	chr16	664425	16	INTRON	INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10:ENST00000569340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	73	2	2.1424	3.9046899999999996	5.66698	0.0374477	0.0102927	0.139793	0.0684871
chr12	46783429	46783529	5221029	0	+	0.39	(0.36,0.39]	chr12	506670	1310	INTRON	INTRON	ENSG00000257261	ENSG00000257261.7	ENST00000667191.1:ENST00000663959.1:ENST00000666025.1:ENST00000611243.2	lncRNA	lncRNA	lncRNA	lncRNA	1	64	2	2.70325	3.9046650000000005	5.10608	0.0824711	0.0111429	0.179396	0.071709
chr4	140737248	140737348	2330000	0	-	0.52	(0.485,0.523]	chr4	234026	353	INTRON	INTRON	TBC1D9	ENSG00000109436.8	ENST00000442267.3	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.45723	3.90445	5.35167	0.0700289	0.0294163	0.195209	0.116079
chr6	169696861	169696961	3304863	0	-	0.47	(0.45,0.485]	chr6	319967	14	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1:ENST00000474018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	67	2	2.46542	3.9042149999999998	5.34301	0.0337868	0.0328801	0.133182	0.122593
chr14	30920405	30920505	5950932	0	-	0.35	(0.33,0.36]	chr14	583071	9	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000366206.2:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	141	2	3.19205	3.904165	4.61628	0.0389619	5.36346e-4	0.13152	0.0091711
chr3	30612467	30612566	1433150	0	+	0.393939	(0.39,0.419]	chr3	152992	51	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4	protein_coding	protein_coding	protein_coding	protein_coding	13	755	2	3.72955	3.9041500000000005	4.07875	0.0048400200000000004	1.10343e-4	0.0454954	0.00295515
chr16	16157909	16158009	6556434	0	-	0.39	(0.36,0.39]	chr16	653065	1	SS3_PROX	SS3_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	84	2	2.00816	3.90411	5.80006	0.0594067	0.0191255	0.176539	0.0952349
chr1	211814970	211815070	655234	0	-	0.48	(0.45,0.485]	chr1	77269	214	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.6953	3.9038000000000004	5.1123	0.0458344	0.0207866	0.142336	0.102713
chr2	53982374	53982474	795024	0	+	0.36	(0.33,0.36]	chr2	90708	71	INTRON	INTRON	ACYP2	ENSG00000170634.13	ENST00000458030.3:ENST00000422521.2:ENST00000607452.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	69	2	2.19524	3.9036750000000002	5.61211	0.0586798	0.022456	0.176098	0.102751
chr6	63732904	63733004	2935259	0	+	0.39	(0.36,0.39]	chr6	288895	70	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000505138.1	protein_coding	protein_coding	protein_coding	protein_coding	2	70	2	2.20456	3.9034299999999997	5.6023	0.0589415	0.0258522	0.176157	0.109555
chr6	158246191	158246291	3060977	0	+	0.51	(0.485,0.523]	chr6	297572	135	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	49	2	2.7365	3.903245	5.06999	0.0445854	0.0423471	0.149195	0.140478
chr21	44459010	44459110	7628066	0	+	0.71	(0.58,1]	chr21	797416	17	UTR3	UTR3:EXON_MRNA	LRRC3	ENSG00000160233.8	ENST00000291592.6	protein_coding	protein_coding	protein_coding	protein_coding	2	99	2	3.22547	3.9028600000000004	4.58025	0.0172566	0.0123946	0.0923809	0.0760412
chr2	148712228	148712328	919042	0	+	0.44	(0.419,0.45]	chr2	102702	195	INTRON	INTRON	EPC2	ENSG00000135999.12	ENST00000457184.5:ENST00000258484.11:ENST00000397424.2	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.8723	3.9026	4.9329	0.0716557	0.0367198	0.168159	0.139793
chr3	188244660	188244760	1652705	0	+	0.42	(0.419,0.45]	chr3	173754	41	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.8723	3.9026	4.9329	0.0716557	0.0367198	0.168159	0.139793
chr2	241669185	241669279	1078223	0	+	0.425532	(0.419,0.45]	chr2	117195	1	INTRON	INTRON	ATG4B	ENSG00000168397.17	ENST00000405546.7:ENST00000402096.5:ENST00000494465.5:ENST00000404914.8:ENST00000482507.5:ENST00000344376.9:ENST00000428861.1:ENST00000460211.5:ENST00000475693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	92	2	2.36086	3.9024650000000003	5.44407	0.0799528	0.00585948	0.177133	0.0474117
chr2	135626126	135626226	901475	0	+	0.55	(0.523,0.58]	chr2	101580	30	INTRON	INTRON	R3HDM1	ENSG00000048991.17	ENST00000683871.1:ENST00000409478.5:ENST00000264160.8:ENST00000488035.5:ENST00000410054.5:ENST00000628915.2:ENST00000436436.5:ENST00000409606.5:ENST00000456040.1:ENST00000480793.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	3.08569	3.902455	4.71922	0.0721601	0.020773	0.168159	0.102713
chr6	520879	520979	3077349	0	-	0.58	(0.523,0.58]	chr6	299297	208	INTRON	INTRON	EXOC2	ENSG00000112685.14	ENST00000230449.9	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	3.08569	3.902455	4.71922	0.0721601	0.020773	0.168159	0.102713
chr10	76062282	76062382	4526796	0	+	0.44	(0.419,0.45]	chr10	432311	31	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.7644	3.902415	5.04043	0.0625897	0.0447981	0.160305	0.154539
chr9	87513401	87513501	4175583	0	+	0.44	(0.419,0.45]	chr9	397139	65	INTRON	INTRON	DAPK1	ENSG00000196730.13	ENST00000358077.9:ENST00000469640.6:ENST00000472284.5:ENST00000469067.5:ENST00000408954.8:ENST00000622514.4:ENST00000496522.5:ENST00000472344.1:ENST00000491893.5:ENST00000489291.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	2.7644	3.902415	5.04043	0.0625897	0.0447981	0.160305	0.154539
chr2	25328921	25329021	1105853	0	-	0.61	(0.58,1]	chr2	120784	3	PRIMIRNA	PRIMIRNA:INTRON	DNMT3A:MIR1301	ENSG00000119772.19:ENSG00000221445.3	ENST00000264709.7:ENST00000321117.10:ENST00000380756.7:ENST00000406659.3:ENST00000408518.3	miRNA	protein_coding	miRNA:protein_coding	protein_coding:nonsense_mediated_decay:primary_miRNA	1	45	2	2.97713	3.90233	4.82753	0.0427798	0.0226795	0.13762	0.108193
chr7	47497917	47498017	3588791	0	-	0.6	(0.58,1]	chr7	346132	164	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.97713	3.90233	4.82753	0.0427798	0.0226795	0.13762	0.108193
chr17	38726797	38726897	6729351	0	+	0.6	(0.58,1]	chr17	676371	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	MLLT6	ENSG00000275023.5	ENST00000621332.5:ENST00000619356.1:ENST00000615741.1:ENST00000615441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	208	2	3.54036	3.90231	4.26426	0.00360545	5.74176e-4	0.0385302	0.00962957
chr17	58364592	58364691	6932514	0	-	0.59596	(0.58,1]	chr17	706609	6	INTRON	INTRON	RNF43	ENSG00000108375.13	ENST00000577716.5:ENST00000407977.7:ENST00000584437.5:ENST00000583753.5:ENST00000577625.5:ENST00000581868.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.91493	3.90219	4.88945	0.0388928	0.0259506	0.131324	0.116361
chr1	110960941	110961040	560803	0	-	0.383838	(0.36,0.39]	chr1	64299	78	INTRON	INTRON	LRIF1	ENSG00000121931.16	ENST00000369763.5:ENST00000485275.2	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	2.59031	3.9021550000000005	5.214	0.0956255	0.00887999	0.189038	0.0618231
chr16	89435320	89435420	6661187	0	-	0.56	(0.523,0.58]	chr16	666753	36	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	79	2	2.32973	3.9017749999999998	5.47382	0.0281429	0.0244797	0.121961	0.106683
chr7	6703470	6703569	3542748	0	-	0.424242	(0.419,0.45]	chr7	342318	27	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	2	145	2	3.54067	3.90168	4.26269	0.025866	0.0016249	0.109555	0.0200276
chr14	105442725	105442825	5927457	0	+	0.55	(0.523,0.58]	chr14	580172	36	INTRON	INTRON	MTA1	ENSG00000182979.18	ENST00000435036.6:ENST00000331320.12:ENST00000406191.5:ENST00000405646.5:ENST00000438610.5:ENST00000551236.5:ENST00000481012.5:ENST00000424723.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	2.68276	3.90163	5.1205	0.0464998	0.0416463	0.156036	0.136301
chr16	81623896	81623996	6509536	0	+	0.54	(0.523,0.58]	chr16	645926	18	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.68276	3.90163	5.1205	0.0464998	0.0416463	0.156036	0.136301
chr8	141001029	141001122	4093142	0	-	0.83871	(0.58,1]	chr8	388938	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	54	2	2.6577	3.901335	5.14497	0.0695799	0.00474658	0.167028	0.0413976
chr7	210074	210174	3305755	0	+	0.64	(0.58,1]	chr7	320161	7	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.25332	3.901295	4.54927	0.0643046	0.0120565	0.161669	0.0754623
chr4	138180340	138180440	2324548	0	-	0.31	(0.29,0.33]	chr4	233582	3	SS5_PROX	SS5_PROX:INTRON	SLC7A11	ENSG00000151012.13	ENST00000280612.9:ENST00000509248.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	3.28897	3.90099	4.51301	0.0885563	0.0137233	0.183874	0.0814223
chr20	43549502	43549599	7481037	0	+	0.587629	(0.58,1]	chr20	779362	14	UTR3	UTR3:EXON_MRNA	L3MBTL1	ENSG00000185513.17	ENST00000649917.1:ENST00000649698.1:ENST00000422861.3:ENST00000648715.1:ENST00000647827.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	73	2	2.09894	3.900425	5.70191	0.0411332	0.00964351	0.147756	0.0659937
chr14	104875855	104875955	5925970	0	+	0.68	(0.58,1]	chr14	579943	2	SS3_PROX	SS3_PROX:INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	3.03776	3.9002999999999997	4.76284	0.0471737	0.00720487	0.143232	0.0543254
chr10	75473710	75473810	4520895	0	+	0.45	(0.419,0.45]	chr10	432249	221	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	2.61235	3.900195	5.18804	0.051668	0.0274539	0.148503	0.119733
chr16	85228065	85228165	6515349	0	+	0.7	(0.58,1]	chr16	646377	3	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	71	2	3.61485	3.900015	4.18518	0.0374658	0.0133763	0.139793	0.0790342
chr9	124654607	124654707	4404191	0	-	0.49	(0.485,0.523]	chr9	419893	589	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	5	288	2	3.10547	3.89989	4.69431	0.0148442	8.46808e-5	0.0832754	0.00242156
chrX	9528687	9528787	7843082	0	+	0.68	(0.58,1]	chrX	822404	265	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.63525	3.89989	5.16453	0.0459151	0.0249802	0.154743	0.10758
chr19	5900048	5900146	7318271	0	-	0.602041	(0.58,1]	chr19	755741	27	INTRON	INTRON	NDUFA11	ENSG00000174886.14	ENST00000418389.6:ENST00000308961.5:ENST00000592634.5:ENST00000593233.1:ENST00000650663.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	3.03676	3.8998	4.76284	0.0471737	0.0198789	0.143232	0.100864
chr6	35493301	35493401	3125628	0	-	0.62	(0.58,1]	chr6	304825	62	INTRON	INTRON	TEAD3	ENSG00000007866.22	ENST00000338863.13:ENST00000402886.9:ENST00000639578.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	3.03676	3.8998	4.76284	0.0471737	0.0198789	0.143232	0.100864
chr9	71890267	71890367	4315563	0	-	0.42	(0.419,0.45]	chr9	412586	148	INTRON	INTRON	ABHD17B	ENSG00000107362.14	ENST00000377041.6:ENST00000333421.7	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.52086	3.8997699999999997	5.27868	0.0683849	0.0457732	0.193274	0.142336
chr14	19278064	19278164	5928139	0	-	0.32	(0.29,0.33]	chr14	580392	83	INTRON	INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	137	2	3.72807	3.8997599999999997	4.07145	0.00757557	0.00487126	0.0579104	0.0420427
chr6	130872738	130872838	3260264	0	-	0.45	(0.419,0.45]	chr6	315474	2	SS3_PROX	SS3_PROX:INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000528282.5:ENST00000531410.5:ENST00000392427.7:ENST00000530757.5:ENST00000368128.6:ENST00000527411.5:ENST00000524581.5:ENST00000525271.5:ENST00000529208.5:ENST00000525193.5:ENST00000527659.5:ENST00000527017.6:ENST00000527423.5:ENST00000456097.6:ENST00000525198.1:ENST00000533912.1:ENST00000534166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	72	2	3.08499	3.8997450000000002	4.7145	0.0509743	0.0256236	0.148503	0.115966
chr22	31623949	31624049	7788304	0	-	0.64	(0.58,1]	chr22	817183	1	SS3_PROX	SS3_PROX:INTRON	PISD	ENSG00000241878.12	ENST00000460723.5:ENST00000439502.7:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5:ENST00000474017.5:ENST00000478893.5:ENST00000491342.1:ENST00000422020.5:ENST00000442379.1:ENST00000429683.1:ENST00000431201.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	2.84993	3.899375	4.94882	0.0354433	0.0297842	0.127188	0.126591
chr3	13198426	13198526	1691126	0	-	0.62	(0.58,1]	chr3	176566	339	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.84993	3.899375	4.94882	0.0354433	0.0297842	0.127188	0.126591
chr16	52493226	52493325	6589321	0	-	0.434343	(0.419,0.45]	chr16	658702	172	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	2.7072600000000002	3.8992950000000004	5.09133	0.0586308	0.0496323	0.160725	0.155565
chr9	14792342	14792442	4279626	0	-	0.31	(0.29,0.33]	chr9	408902	2	SS5_PROX	SS5_PROX:INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7:ENST00000466679.1:ENST00000497634.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	209	2	3.38267	3.899095	4.41552	0.00392435	0.00214283	0.0404963	0.0240931
chr2	127497044	127497143	1266285	0	-	0.323232	(0.29,0.33]	chr2	136447	5	INTRON	INTRON	IWS1	ENSG00000163166.15	ENST00000295321.9	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.71956	3.89816	5.07676	0.0442313	0.0412683	0.153511	0.136301
chr3	49773687	49773787	1773916	0	-	0.31	(0.29,0.33]	chr3	183906	249	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.71956	3.89816	5.07676	0.0442313	0.0412683	0.153511	0.136301
chr4	183243827	183243926	2168846	0	+	0.282828	[0,0.29]	chr4	219519	32	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000508614.5:ENST00000448232.6:ENST00000513834.5:ENST00000427431.5:ENST00000438543.5:ENST00000504005.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.79702	3.89813	4.99924	0.0360966	0.0347661	0.139793	0.126529
chr21	37384105	37384205	7619142	0	+	0.5	(0.485,0.523]	chr21	796015	86	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.53228	3.898015	5.26375	0.0614918	0.0335928	0.18013	0.124319
chr16	78754340	78754440	6501960	0	+	0.36	(0.33,0.36]	chr16	645706	627	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6:ENST00000408984.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	3.08687	3.8979049999999997	4.70894	0.0798152	0.0227116	0.176933	0.108285
chr7	95417486	95417584	3641292	0	-	0.367347	(0.36,0.39]	chr7	350622	8	INTRON	INTRON	PON2	ENSG00000105854.13	ENST00000222572.8:ENST00000633531.1:ENST00000455123.5:ENST00000433091.6:ENST00000633192.1:ENST00000446142.5:ENST00000469926.5:ENST00000491069.5:ENST00000490778.5:ENST00000632034.1:ENST00000493290.5:ENST00000478801.5:ENST00000460873.5:ENST00000493469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	70	2	2.64578	3.8976800000000003	5.14958	0.0493212	0.0248934	0.146207	0.114418
chr16	85378540	85378640	6516856	0	+	0.56	(0.523,0.58]	chr16	646391	192	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	3.10715	3.8975	4.68785	0.0418959	0.0194172	0.136901	0.0994526
chr7	139706041	139706141	3723206	0	-	0.49	(0.485,0.523]	chr7	357498	740	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	3.07448	3.8970599999999997	4.71964	0.0718646	0.0214987	0.168159	0.10537
chr17	65549319	65549419	6950754	0	-	0.5	(0.485,0.523]	chr17	709217	4	SS5_PROX	SS5_PROX:INTRON	AXIN2	ENSG00000168646.14	ENST00000307078.10:ENST00000618960.4:ENST00000375702.5	protein_coding	protein_coding	protein_coding	protein_coding	3	80	2	1.94261	3.896955	5.8513	0.062577	0.0131886	0.181719	0.0785398
chr11	70775858	70775958	5062040	0	-	0.4	(0.39,0.419]	chr11	492701	580	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	3.09555	3.8967650000000003	4.69798	0.088901	0.0231436	0.183874	0.109883
chr4	1323551	1323608	1995273	0	+	0.438596	(0.419,0.45]	chr4	203261	2	CDS	CDS:EXON_MRNA:INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	70	2	2.38853	3.89665	5.40477	0.0427256	0.0385125	0.15001	0.131324
chr9	69715268	69715367	4313143	0	-	0.353535	(0.33,0.36]	chr9	412346	59	UTR3	UTR3:EXON_MRNA	PTAR1	ENSG00000188647.13	ENST00000377200.9:ENST00000340434.5	protein_coding	protein_coding	protein_coding	protein_coding	6	348	2	2.92415	3.89643	4.86871	0.0182644	6.78919e-5	0.0921579	0.00205333
chr16	89303124	89303222	6659840	0	-	0.479592	(0.45,0.485]	chr16	666658	11	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	345	2	2.775	3.8963200000000002	5.01764	0.0232415	3.62788e-5	0.10354	0.00129691
chr22	37511820	37511920	7808324	0	-	0.47	(0.45,0.485]	chr22	818437	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CARD10	ENSG00000100065.15	ENST00000403299.5:ENST00000251973.10:ENST00000437756.5:ENST00000494166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	68	2	3.12123	3.8963099999999997	4.67139	0.0428769	0.0223378	0.137868	0.108193
chr5	21502403	21502503	2392600	0	+	0.52	(0.485,0.523]	chr5	239070	2	SS5_PROX	SS5_PROX:INTRON	GUSBP1	ENSG00000183666.18	ENST00000508260.5:ENST00000449061.3:ENST00000685731.1:ENST00000688956.1:ENST00000692922.1:ENST00000686144.1:ENST00000607545.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	49	2	2.67159	3.896255	5.12092	0.0478226	0.0414411	0.1588	0.136301
chr9	104788767	104788867	4360972	0	-	0.5	(0.485,0.523]	chr9	416174	2	SS3_PROX	SS3_PROX:INTRON	ABCA1	ENSG00000165029.17	ENST00000374736.8:ENST00000678995.1	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.67159	3.896255	5.12092	0.0478226	0.0414411	0.1588	0.136301
chr6	31535999	31536092	3118798	0	-	0.376344	(0.36,0.39]	chr6	303025	1	SS5_PROX	SS5_PROX:INTRON	DDX39B	ENSG00000198563.14	ENST00000458640.5:ENST00000462256.5:ENST00000376177.6:ENST00000396172.6:ENST00000482195.5:ENST00000431908.5:ENST00000481456.1:ENST00000427214.5:ENST00000428098.5:ENST00000419338.5:ENST00000456662.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	69	2	2.33887	3.896235	5.4536	0.0459241	0.0321864	0.154743	0.121593
chr9	124489683	124489782	4402619	0	-	0.636364	(0.58,1]	chr9	419805	63	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	2	113	2	3.66231	3.8962149999999998	4.13012	0.0122106	0.00116063	0.0752279	0.0157704
chrX	133869363	133869463	8114861	0	-	0.37	(0.36,0.39]	chrX	845529	344	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	2.85025	3.896095	4.94194	0.064883	0.0373341	0.162218	0.139793
chr2	78079646	78079746	1208246	0	-	0.37	(0.36,0.39]	chr2	130071	1394	INTRON	INTRON	ENSG00000227088	ENSG00000227088.2	ENST00000667782.1	lncRNA	lncRNA	lncRNA	lncRNA	1	51	2	2.79528	3.896	4.99672	0.0604395	0.0413701	0.158506	0.148333
chr10	48040735	48040835	4680773	0	-	0.53	(0.523,0.58]	chr10	446508	13	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	3	176	2	3.04714	3.8959850000000005	4.74483	0.0234449	2.83162e-4	0.104248	0.00581439
chr20	8454047	8454147	7429808	0	+	0.5	(0.485,0.523]	chr20	773698	820	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	67	2	2.13331	3.89561	5.65791	0.0626854	0.0181582	0.181933	0.0921579
chr20	62934295	62934395	7585679	0	-	0.5	(0.485,0.523]	chr20	792933	51	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000370371.8	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	2.13331	3.89561	5.65791	0.0626854	0.0181582	0.181933	0.0921579
chr16	75049684	75049784	6492416	0	+	0.46	(0.45,0.485]	chr16	645343	24	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	2.62955	3.89552	5.16149	0.0530416	0.0427653	0.167062	0.13762
chr13	112757850	112757950	5653220	0	+	0.62	(0.58,1]	chr13	554906	403	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000466946.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	2.27185	3.89499	5.51813	0.0433824	0.013519	0.152119	0.0792526
chr9	129612858	129612957	4250959	0	+	0.585859	(0.58,1]	chr9	404743	33	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.27185	3.89499	5.51813	0.0433824	0.013519	0.152119	0.0792526
chr7	112117014	112117114	3691678	0	-	0.43	(0.419,0.45]	chr7	354969	1125	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	52	2	2.9727	3.894705	4.81671	0.08258	0.0303302	0.179396	0.126768
chr17	76547104	76547203	6977076	0	-	0.606061	(0.58,1]	chr17	712268	8	INTRON	INTRON	CYGB:ENSG00000267546	ENSG00000161544.10:ENSG00000267546.2	ENST00000589145.1:ENST00000589963.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	45	2	3.09402	3.8945600000000002	4.6951	0.0521567	0.0174733	0.148503	0.0928044
chr18	36039808	36039908	7145329	0	-	0.4	(0.39,0.419]	chr18	726795	56	INTRON	INTRON	RPRD1A	ENSG00000141425.18	ENST00000399022.9:ENST00000590898.5:ENST00000357384.8:ENST00000588737.5:ENST00000589050.1:ENST00000592674.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:nonsense_mediated_decay	1	51	2	2.84832	3.89446	4.9406	0.0658437	0.0375279	0.162385	0.139823
chr4	3365590	3365689	2005092	0	+	0.525253	(0.523,0.58]	chr4	204663	222	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	65	2	2.43762	3.89443	5.35124	0.0343548	0.0295772	0.134666	0.116079
chr20	8317161	8317261	7428436	0	+	0.36	(0.33,0.36]	chr20	773693	104	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	188	2	3.32681	3.894405	4.462	0.0157023	8.20147e-4	0.0852875	0.0123945
chr15	25435064	25435163	6205972	0	-	0.393939	(0.39,0.419]	chr15	610832	76	INTRON	INTRON	UBE3A	ENSG00000114062.22	ENST00000648336.2:ENST00000438097.6:ENST00000635914.1:ENST00000638155.1:ENST00000637886.1:ENST00000638011.1:ENST00000649550.1:ENST00000650110.1:ENST00000630424.2:ENST00000566215.5:ENST00000428984.6:ENST00000675177.1:ENST00000675593.1:ENST00000625778.3:ENST00000675000.1:ENST00000626793.2:ENST00000628733.2:ENST00000630907.2:ENST00000675038.1:ENST00000629886.2:ENST00000628267.2:ENST00000629252.2:ENST00000625681.2:ENST00000627018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	51	2	2.7933500000000002	3.894365	4.99538	0.0613573	0.0415789	0.158506	0.148959
chr19	11553745	11553815	7332772	0	-	0.557143	(0.523,0.58]	chr19	758565	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ELOF1	ENSG00000130165.10	ENST00000586683.5:ENST00000252445.7:ENST00000587806.5:ENST00000589171.5:ENST00000591674.5:ENST00000586120.5:ENST00000590700.5:ENST00000591912.1	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.53438	3.8942050000000004	5.25403	0.0957531	0.00573579	0.189038	0.0467736
chr15	44639211	44639310	6249242	0	-	0.424242	(0.419,0.45]	chr15	615465	52	INTRON	INTRON	SPG11	ENSG00000104133.16	ENST00000684235.1:ENST00000261866.12:ENST00000559511.6:ENST00000682065.1:ENST00000682669.1:ENST00000683496.1:ENST00000682460.1:ENST00000682495.1:ENST00000684038.1:ENST00000683186.1:ENST00000683734.1:ENST00000683753.1:ENST00000535302.6:ENST00000427534.6:ENST00000558319.5:ENST00000684676.1:ENST00000682788.1:ENST00000683121.1:ENST00000682915.1:ENST00000683255.1:ENST00000683573.1:ENST00000682877.1:ENST00000559193.5:ENST00000684490.1:ENST00000682410.1:ENST00000682648.1:ENST00000557866.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	1	52	2	2.64776	3.89413	5.1405	0.0551054	0.0550015	0.169163	0.153337
chr18	77033676	77033776	7180651	0	-	0.42	(0.419,0.45]	chr18	730157	160	INTRON	INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000580402.5:ENST00000580473.5:ENST00000397860.7:ENST00000397863.5:ENST00000581878.5:ENST00000487778.5:ENST00000490754.5:ENST00000495162.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	70	2	3.00229	3.8940200000000003	4.78575	0.0572793	0.0224633	0.154343	0.108193
chr7	219653	219752	3305851	0	+	0.69697	(0.58,1]	chr7	320161	103	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.48056	3.8940150000000004	5.30747	0.0277636	0.0196049	0.12074	0.0955413
chr16	11788127	11788227	6549944	0	-	0.6	(0.58,1]	chr16	652048	52	INTRON	INTRON	ZC3H7A	ENSG00000122299.12	ENST00000355758.9:ENST00000571198.5:ENST00000575170.1:ENST00000576018.5:ENST00000572781.5:ENST00000574995.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.78186	3.893855	5.00585	0.0342923	0.0323732	0.13449	0.121593
chr20	63734547	63734644	7509386	0	+	0.608247	(0.58,1]	chr20	783523	9	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000632538.1:ENST00000484569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	2.78186	3.893855	5.00585	0.0342923	0.0323732	0.13449	0.121593
chr7	207999	208099	3305734	0	+	0.64	(0.58,1]	chr7	320155	106	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6:ENST00000477004.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.78186	3.893855	5.00585	0.0342923	0.0323732	0.13449	0.121593
chr3	24482722	24482822	1716355	0	-	0.38	(0.36,0.39]	chr3	178018	234	INTRON	INTRON	THRB	ENSG00000151090.20	ENST00000646209.2:ENST00000396671.7:ENST00000356447.9:ENST00000646432.1:ENST00000643772.1:ENST00000645139.1:ENST00000642307.1:ENST00000644321.1:ENST00000646966.1:ENST00000416420.5:ENST00000413780.5:ENST00000447875.5:ENST00000453729.6:ENST00000431815.5:ENST00000447414.5:ENST00000428492.5:ENST00000418247.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	2.73813	3.8938099999999998	5.04949	0.0563927	0.0459393	0.154743	0.154188
chr21	44867331	44867429	7678515	0	-	0.55102	(0.523,0.58]	chr21	802773	13	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	1000	2	3.80288	3.8936200000000003	3.98436	0.00167849	2.27868e-4	0.0253818	0.00496299
chr19	13139384	13139482	7212647	0	+	0.622449	(0.58,1]	chr19	736450	11	UTR3	UTR3:EXON_MRNA	NACC1	ENSG00000160877.6	ENST00000292431.5	protein_coding	protein_coding	protein_coding	protein_coding	3	150	2	3.84938	3.893555	3.93773	0.00708574	7.06615e-4	0.0558168	0.0111608
chr10	808672	808772	4619830	0	-	0.56	(0.523,0.58]	chr10	441354	4	SS3_PROX	SS3_PROX:INTRON	LARP4B	ENSG00000107929.16	ENST00000614908.5:ENST00000688365.1	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	3.13506	3.8933150000000003	4.65157	0.0787008	0.0186841	0.175203	0.0976296
chr3	136300333	136300431	1574582	0	+	0.571429	(0.523,0.58]	chr3	167002	19	INTRON	INTRON	PCCB	ENSG00000114054.14	ENST00000251654.9:ENST00000490504.5:ENST00000483687.5:ENST00000468777.5:ENST00000462637.5:ENST00000466072.5:ENST00000484181.5:ENST00000482086.5:ENST00000471595.5:ENST00000469217.5:ENST00000478469.5:ENST00000474833.5:ENST00000475214.5:ENST00000473073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	3.13506	3.8933150000000003	4.65157	0.0787008	0.0186841	0.175203	0.0976296
chr17	77485725	77485824	6805239	0	+	0.494949	(0.485,0.523]	chr17	686821	17	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	129	2	3.49585	3.89308	4.29031	0.0222996	0.00107516	0.102226	0.0148869
chr17	7177812	7177902	6847854	0	-	0.677778	(0.58,1]	chr17	693467	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574388.5:ENST00000573596.1:ENST00000573083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	209	2	3.84557	3.8930350000000002	3.9405	0.00343042	5.32484e-4	0.0375555	0.00913375
chr6	16427463	16427563	3101107	0	-	0.41	(0.39,0.419]	chr6	300842	986	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8	protein_coding	protein_coding	protein_coding	protein_coding	2	141	2	3.39822	3.8929599999999995	4.3877	0.0304458	0.00109743	0.118523	0.0151321
chr16	89434122	89434222	6661175	0	-	0.58	(0.523,0.58]	chr16	666753	24	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	66	2	2.19842	3.8926100000000003	5.5868	0.0551586	0.020474	0.169218	0.0979776
chr1	180695303	180695403	297027	0	+	0.4	(0.39,0.419]	chr1	33791	125	INTRON	INTRON	XPR1	ENSG00000143324.14	ENST00000367590.9:ENST00000367589.3	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.90127	3.8924649999999996	4.88366	0.0707789	0.0339406	0.168159	0.133629
chr11	70732092	70732192	5061602	0	-	0.58	(0.523,0.58]	chr11	492701	142	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.61478	3.8922350000000003	5.16969	0.052707	0.0387762	0.167062	0.131324
chr8	18005662	18005762	3765311	0	+	0.4	(0.39,0.419]	chr8	361786	117	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5:ENST00000522275.5	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	2.29339	3.8921349999999997	5.49088	0.0501037	0.0309972	0.161731	0.119758
chr17	15460571	15460671	6860040	0	-	0.6	(0.58,1]	chr17	695067	71	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	60	2	2.6194	3.891965	5.16453	0.0249802	0.0202577	0.10758	0.102015
chr1	23970046	23970145	426208	0	-	0.282828	[0,0.29]	chr1	50188	22	UTR3	UTR3:EXON_MRNA:INTRON	SRSF10	ENSG00000188529.15	ENST00000492112.3:ENST00000344989.10:ENST00000341154.10:ENST00000453840.7:ENST00000484146.6:ENST00000473858.5:ENST00000374452.9:ENST00000374453.7:ENST00000343255.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	2.43841	3.891945	5.34548	0.0701324	0.0197148	0.195286	0.0958249
chr3	15779147	15779247	1698009	0	-	0.44	(0.419,0.45]	chr3	177556	125	INTRON	INTRON	ANKRD28	ENSG00000206560.12	ENST00000399451.6:ENST00000624145.3:ENST00000683139.1:ENST00000412318.5:ENST00000497037.5:ENST00000451422.1:ENST00000498524.5:ENST00000439830.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	65	2	2.68635	3.891765	5.09718	0.0876314	0.012235	0.183437	0.0757339
chr3	195150992	195151092	1981523	0	-	0.6	(0.58,1]	chr3	201666	41	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000437101.5:ENST00000473200.1:ENST00000429994.5:ENST00000418940.5:ENST00000491138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	113	2	3.37954	3.8915800000000003	4.40362	0.0207688	5.10596e-4	0.098873	0.00886422
chr9	134371770	134371870	4261141	0	+	0.74	(0.58,1]	chr9	406311	448	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	62	2	3.29173	3.891445	4.49116	0.0243429	0.0207449	0.106588	0.102713
chr17	317128	317227	6821447	0	-	0.555556	(0.523,0.58]	chr17	689582	106	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	140	2	3.65844	3.891395	4.12435	0.00737536	0.00554418	0.0572036	0.0456911
chr6	167908467	167908564	3074169	0	+	0.340206	(0.33,0.36]	chr6	298866	8	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	2.83079	3.89121	4.95163	0.0583482	0.0376711	0.155373	0.140049
chr6	158628990	158629069	3064597	0	+	0.582278	(0.58,1]	chr6	297764	1	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	6	100	2	1.79919	3.8912050000000002	5.98322	0.0443091	0.00562007	0.153511	0.0493906
chr2	54570581	54570681	799420	0	+	0.44	(0.419,0.45]	chr2	90800	113	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7:ENST00000333896.5	protein_coding	protein_coding	protein_coding	protein_coding	4	266	2	3.60215	3.891015	4.17988	0.0117571	6.1411e-4	0.0737098	0.0101036
chr17	77468357	77468456	6805062	0	+	0.606061	(0.58,1]	chr17	686810	14	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	100	2	1.82737	3.890955	5.95454	0.0416055	0.0059453	0.149021	0.0506158
chr7	73599225	73599325	3602849	0	-	0.56	(0.523,0.58]	chr7	347629	3	SS5_PROX	SS5_PROX:INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	176	2	3.2044	3.8903749999999997	4.57635	0.0178457	4.64368e-4	0.0916319	0.00826853
chr10	5911818	5911913	4440973	0	+	0.536842	(0.523,0.58]	chr10	425257	3	INTRON	INTRON	FBH1	ENSG00000134452.20	ENST00000397269.7:ENST00000362091.9:ENST00000379999.6	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	2.81323	3.890185	4.96714	0.0650388	0.0108948	0.162385	0.0706366
chr16	85346864	85346964	6516538	0	+	0.55	(0.523,0.58]	chr16	646381	378	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	2.81323	3.890185	4.96714	0.0650388	0.0108948	0.162385	0.0706366
chr3	42646763	42646862	1452459	0	+	0.282828	[0,0.29]	chr3	155084	9	UTR3	UTR3:EXON_MRNA	NKTR	ENSG00000114857.19	ENST00000429888.5:ENST00000232978.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	77	2	1.92207	3.8901399999999997	5.85821	0.0629877	0.00783384	0.182776	0.0592199
chr11	11875052	11875151	4799024	0	+	0.353535	(0.33,0.36]	chr11	460294	8	INTRON	INTRON	USP47	ENSG00000170242.19	ENST00000339865.9:ENST00000525257.1:ENST00000527733.7:ENST00000399455.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	2.77362	3.8900200000000003	5.00642	0.0542065	0.041944	0.151733	0.149108
chr14	103106899	103106999	5921889	0	+	0.57	(0.523,0.58]	chr14	579225	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	59	2	2.57767	3.889355	5.20104	0.090356	0.00648051	0.186369	0.0503748
chr1	112706906	112706994	563041	0	-	0.738636	(0.58,1]	chr1	64626	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	RHOC	ENSG00000155366.17	ENST00000369633.6:ENST00000369642.7:ENST00000339083.12:ENST00000285735.6:ENST00000468093.5:ENST00000369638.6:ENST00000369637.5:ENST00000369636.6:ENST00000484280.6:ENST00000369632.6:ENST00000425265.6:ENST00000436685.6:ENST00000528831.5:ENST00000484054.3:ENST00000478447.1:ENST00000527563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	60	2	3.19823	3.88924	4.58025	0.0287301	0.0172566	0.115888	0.0923809
chr9	134411898	134411998	4261552	0	+	0.69	(0.58,1]	chr9	406352	24	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000481739.2:ENST00000356384.4:ENST00000672570.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	2.38295	3.889205	5.39546	0.0730701	0.0168207	0.199669	0.0884836
chr2	138420483	138420583	1277673	0	-	0.43	(0.419,0.45]	chr2	137676	16	INTRON	INTRON	SPOPL-DT	ENSG00000228043.5	ENST00000431985.5	lncRNA	lncRNA	lncRNA	lncRNA	1	53	2	3.15468	3.888705	4.62273	0.103601	0.0211324	0.197541	0.103778
chr10	79178811	79178911	4533145	0	+	0.64	(0.58,1]	chr10	432438	163	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	3	73	2	2.00788	3.88861	5.76934	0.0498302	0.00849371	0.161202	0.0617717
chr6	157311685	157311784	3298408	0	-	0.50505	(0.485,0.523]	chr6	319197	183	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	6	109	2	1.7021	3.888265	6.07443	0.0611106	0.00899749	0.18013	0.0637469
chr6	144347500	144347600	3020485	0	+	0.45	(0.419,0.45]	chr6	295148	28	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1:ENST00000628146.2:ENST00000421035.2	protein_coding	protein_coding	protein_coding	protein_coding	5	330	2	3.56197	3.888205	4.21444	0.00893929	5.58653e-4	0.0637469	0.00944382
chr12	26464513	26464613	5397855	0	-	0.54	(0.523,0.58]	chr12	528476	205	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000451599.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	2.46839	3.8881699999999997	5.30795	0.0683019	0.0315825	0.193274	0.120781
chr16	57374120	57374219	6466005	0	+	0.565657	(0.523,0.58]	chr16	641365	11	INTRON	INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.46839	3.8881699999999997	5.30795	0.0683019	0.0315825	0.193274	0.120781
chr1	9556301	9556401	20523	0	+	0.41	(0.39,0.419]	chr1	2233	21	INTRON	INTRON	SLC25A33	ENSG00000171612.7	ENST00000302692.7	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.67669	3.8878749999999997	5.09906	0.0535378	0.051368	0.165482	0.150319
chr22	37492902	37493002	7808109	0	-	0.6	(0.58,1]	chr22	818358	1	SS3_PROX	SS3_PROX:INTRON	CARD10	ENSG00000100065.15	ENST00000403299.5:ENST00000251973.10:ENST00000488141.5:ENST00000467812.1:ENST00000406271.7:ENST00000437756.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	64	2	3.37954	3.8878700000000004	4.3962	0.0250928	0.0207688	0.114418	0.098873
chr6	144347300	144347400	3020483	0	+	0.54	(0.523,0.58]	chr6	295148	26	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1:ENST00000628146.2:ENST00000421035.2	protein_coding	protein_coding	protein_coding	protein_coding	2	132	2	3.86955	3.8878	3.90605	0.0117111	0.00295607	0.0737098	0.0300958
chr1	2239636	2239736	4607	0	+	0.58	(0.523,0.58]	chr1	1048	66	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	2.86937	3.887185	4.905	0.0563605	0.0324455	0.154188	0.130548
chr1	204081379	204081479	322133	0	+	0.55	(0.523,0.58]	chr1	36272	28	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1:ENST00000528591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	2.86937	3.887185	4.905	0.0563605	0.0324455	0.154188	0.130548
chr2	10310413	10310512	718500	0	+	0.565657	(0.523,0.58]	chr2	84018	61	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.86937	3.887185	4.905	0.0563605	0.0324455	0.154188	0.130548
chr2	101727232	101727332	860928	0	+	0.36	(0.33,0.36]	chr2	97528	283	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.93873	3.887055	4.83538	0.0679743	0.0305837	0.164413	0.126768
chr13	26257968	26258068	5551226	0	+	0.38	(0.36,0.39]	chr13	547916	28	INTRON	INTRON	CDK8	ENSG00000132964.12	ENST00000536792.5:ENST00000381527.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	3.14223	3.886965	4.6317	0.0950937	0.0209989	0.189021	0.103249
chr11	70742384	70742484	5061705	0	-	0.43	(0.419,0.45]	chr11	492701	245	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.58571	3.886875	5.18804	0.0613171	0.051668	0.18013	0.148503
chr19	55636311	55636410	7293432	0	+	0.50505	(0.485,0.523]	chr19	750917	2	INTRON	INTRON	ZNF580:ZNF581	ENSG00000213015.9:ENSG00000171425.10	ENST00000592881.1:ENST00000587252.5	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.60361	3.8868650000000002	5.17012	0.0541523	0.038581	0.167824	0.131324
chr3	172266534	172266634	1629745	0	+	0.52	(0.485,0.523]	chr3	170590	146	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	49	2	2.60361	3.8868650000000002	5.17012	0.0541523	0.038581	0.167824	0.131324
chr17	82627591	82627691	6989734	0	-	0.58	(0.523,0.58]	chr17	715026	3	SS3_PROX	SS3_PROX:INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000571835.5:ENST00000573616.5:ENST00000571817.5:ENST00000574828.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	154	2	3.35934	3.886825	4.41431	0.0113252	0.00427917	0.071894	0.042386
chr17	77375920	77376001	6804122	0	+	0.530864	(0.523,0.58]	chr17	686753	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1:ENST00000423034.6:ENST00000590059.5:ENST00000587514.1:ENST00000590586.1:ENST00000592407.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	65	2	2.29891	3.8863649999999996	5.47382	0.0454288	0.0244797	0.154539	0.106683
chr11	12783129	12783229	4802733	0	+	0.37	(0.36,0.39]	chr11	460563	183	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	2.66658	3.88633	5.10608	0.086575	0.0111429	0.182221	0.071709
chr16	89435020	89435120	6661184	0	-	0.51	(0.485,0.523]	chr16	666753	33	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	67	2	2.81013	3.88626	4.96239	0.0518747	0.0154038	0.148503	0.0869771
chr11	61273607	61273707	5041314	0	-	0.58	(0.523,0.58]	chr11	488764	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10:ENST00000535710.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.92656	3.886125	4.84569	0.0610722	0.0289226	0.158506	0.124
chr13	29590655	29590754	5677924	0	-	0.555556	(0.523,0.58]	chr13	557663	40	INTRON	INTRON	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.92656	3.886125	4.84569	0.0610722	0.0289226	0.158506	0.124
chr22	24102502	24102536	7695387	0	+	0.529412	(0.523,0.58]	chr22	805524	1	SS5_PROX	SS5_PROX:INTRON	CABIN1:ENSG00000232545	ENSG00000099991.18:ENSG00000232545.1	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1:ENST00000444093.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	1	48	2	2.92656	3.886125	4.84569	0.0610722	0.0289226	0.158506	0.124
chr1	42177826	42177925	454948	0	-	0.353535	(0.33,0.36]	chr1	54686	14	UTR3	UTR3:EXON_MRNA	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000372571.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.51922	3.8860699999999997	5.25292	0.0659899	0.0384256	0.189025	0.131324
chr21	45433843	45433943	7630601	0	+	0.64	(0.58,1]	chr21	797656	280	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	2.22208	3.88593	5.54978	0.074035	0.00165911	0.171168	0.0202545
chr18	76387096	76387196	7178990	0	-	0.58	(0.523,0.58]	chr18	730080	64	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.80981	3.88589	4.96197	0.0521137	0.0364868	0.148503	0.139793
chr4	57008872	57008970	2047654	0	+	0.530612	(0.523,0.58]	chr4	209542	15	INTRON	INTRON	POLR2B	ENSG00000047315.17	ENST00000381227.5:ENST00000431623.6:ENST00000441246.6:ENST00000314595.6	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.80981	3.88589	4.96197	0.0521137	0.0364868	0.148503	0.139793
chr9	124259054	124259151	4235505	0	+	0.525773	(0.523,0.58]	chr9	402076	3	INTRON	INTRON	NEK6	ENSG00000119408.17	ENST00000373603.5:ENST00000540326.5:ENST00000320246.10:ENST00000373600.7:ENST00000545174.5:ENST00000444973.5:ENST00000454453.5	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.80981	3.88589	4.96197	0.0521137	0.0364868	0.148503	0.139793
chr2	91629752	91629852	1217382	0	-	0.35	(0.33,0.36]	chr2	131098	4	INTRON	INTRON	LSP1P4	ENSG00000143429.11	ENST00000692025.1:ENST00000423774.3:ENST00000609777.6:ENST00000692653.1:ENST00000608501.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	70	2	3.19205	3.885815	4.57958	0.0389619	0.0288057	0.13152	0.123764
chr1	27489785	27489885	431249	0	-	0.71	(0.58,1]	chr1	50974	4	SS5_PROX	SS5_PROX:INTRON	WASF2	ENSG00000158195.11	ENST00000618852.5:ENST00000536657.1	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.74846	3.8857999999999997	5.02314	0.0605281	0.00638322	0.158506	0.0501889
chr3	65929158	65929258	1814770	0	-	0.37	(0.36,0.39]	chr3	187310	216	INTRON	INTRON	MAGI1:MAGI1-IT1	ENSG00000151276.24:ENSG00000272610.1	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5:ENST00000460754.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	1	52	2	2.48379	3.885785	5.28778	0.0714535	0.0407706	0.198579	0.135868
chr1	1065475	1065575	1398	0	+	0.66	(0.58,1]	chr1	330	1	SS5_ADJ	SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	ENSG00000217801	ENSG00000217801.11	ENST00000688131.1:ENST00000456409.6:ENST00000692821.1:ENST00000394517.7:ENST00000427998.6:ENST00000685011.1:ENST00000692266.1:ENST00000412397.2:ENST00000433695.1:ENST00000451054.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	45	2	2.71042	3.88556	5.0607	0.0396128	0.029633	0.143388	0.116079
chr1	1219396	1219493	380380	0	-	0.742268	(0.58,1]	chr1	42840	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000494748.1:ENST00000478938.1:ENST00000403997.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.71042	3.88556	5.0607	0.0396128	0.029633	0.143388	0.116079
chr3	13021233	13021332	1689348	0	-	0.636364	(0.58,1]	chr3	176537	263	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.71042	3.88556	5.0607	0.0396128	0.029633	0.143388	0.116079
chr16	85523479	85523579	6518306	0	+	0.66	(0.58,1]	chr16	646391	1642	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.02751	3.885485	4.74346	0.0385189	0.0121457	0.131324	0.0754623
chr9	134371371	134371470	4261137	0	+	0.666667	(0.58,1]	chr9	406311	444	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	57	2	3.02751	3.885485	4.74346	0.0385189	0.0121457	0.131324	0.0754623
chr21	29306221	29306321	7603712	0	+	0.46	(0.45,0.485]	chr21	794428	5	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000548219.5:ENST00000550131.5:ENST00000547141.5:ENST00000546469.5:ENST00000286800.8:ENST00000399921.5:ENST00000548467.1:ENST00000451655.5:ENST00000447177.5:ENST00000435072.1	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.5616	3.8853299999999997	5.20906	0.0598406	0.0399616	0.177269	0.133954
chr9	87537271	87537371	4175822	0	+	0.53	(0.523,0.58]	chr9	397141	119	INTRON	INTRON	DAPK1	ENSG00000196730.13	ENST00000358077.9:ENST00000469640.6:ENST00000472284.5:ENST00000469067.5:ENST00000408954.8:ENST00000622514.4:ENST00000496522.5:ENST00000472344.1:ENST00000491893.5:ENST00000489291.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	176	2	2.88927	3.885275	4.88128	0.0306051	1.88282e-4	0.119102	0.00434954
chr11	66600306	66600397	4876706	0	+	0.483516	(0.45,0.485]	chr11	469525	4	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	CCS	ENSG00000173992.9	ENST00000530384.5:ENST00000533244.6:ENST00000530961.5:ENST00000531990.1:ENST00000310190.8:ENST00000534763.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	67	2	2.19184	3.88519	5.57854	0.0575893	0.0230065	0.17499	0.102982
chr17	57544504	57544604	6762660	0	+	0.47	(0.45,0.485]	chr17	682152	144	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1:ENST00000674898.1:ENST00000674574.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	2.87326	3.885055	4.89685	0.0614781	0.033576	0.158506	0.133139
chr20	46359158	46359258	7567295	0	-	0.48	(0.45,0.485]	chr20	790695	2	SS3_PROX	SS3_PROX:INTRON	SLC35C2	ENSG00000080189.15	ENST00000543605.5:ENST00000372230.10:ENST00000243896.6:ENST00000372227.5:ENST00000317734.12:ENST00000484318.5:ENST00000481809.1:ENST00000484188.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.87326	3.885055	4.89685	0.0614781	0.033576	0.158506	0.133139
chr4	94599681	94599781	2089158	0	+	0.48	(0.45,0.485]	chr4	212960	116	INTRON	INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000509357.5:ENST00000511586.5:ENST00000380176.7:ENST00000506632.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	2.81608	3.8849400000000003	4.9538	0.0569772	0.0375071	0.154343	0.139823
chr1	26854428	26854525	69803	0	+	0.618557	(0.58,1]	chr1	7824	7	UTR3	UTR3:EXON_MRNA:INTRON	ZDHHC18	ENSG00000204160.12	ENST00000374142.9:ENST00000488397.3	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.55596	3.884865	5.21377	0.0534085	0.0230012	0.167062	0.102982
chr18	13446804	13446901	7025044	0	+	0.608247	(0.58,1]	chr18	717583	26	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000610087.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	2.55596	3.884865	5.21377	0.0534085	0.0230012	0.167062	0.102982
chr21	44459309	44459408	7628069	0	+	0.555556	(0.523,0.58]	chr21	797416	20	UTR3	UTR3:EXON_MRNA	LRRC3	ENSG00000160233.8	ENST00000291592.6	protein_coding	protein_coding	protein_coding	protein_coding	3	226	2	3.62427	3.88457	4.14487	0.0060311	0.00307314	0.0484641	0.0354051
chr2	102143420	102143520	863822	0	+	0.46	(0.45,0.485]	chr2	97796	4	SS5_PROX	SS5_PROX:INTRON	IL1R1	ENSG00000115594.12	ENST00000452403.5:ENST00000409929.5:ENST00000424272.5:ENST00000409589.5:ENST00000409329.5:ENST00000450319.5:ENST00000428279.5:ENST00000442590.5:ENST00000410023.6:ENST00000409288.5	protein_coding	protein_coding	protein_coding	protein_coding	3	80	2	2.30281	3.884195	5.46558	0.0311884	0.0273644	0.127822	0.112372
chr20	8246804	8246904	7427728	0	+	0.41	(0.39,0.419]	chr20	773674	961	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	2.48186	3.884145	5.28643	0.0717596	0.041475	0.199212	0.136301
chr17	957804	957904	6826413	0	-	0.56	(0.523,0.58]	chr17	690074	245	INTRON	INTRON	NXN	ENSG00000167693.17	ENST00000336868.8:ENST00000575171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	60	2	2.7389	3.8840850000000002	5.02927	0.072318	0.0095202	0.168347	0.0650078
chr15	101354642	101354741	6363085	0	-	0.383838	(0.36,0.39]	chr15	627201	65	INTRON	INTRON	PCSK6	ENSG00000140479.18	ENST00000677364.1:ENST00000676598.1:ENST00000558951.5:ENST00000398185.6:ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000679007.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000559605.1:ENST00000560902.5:ENST00000611967.4:ENST00000615296.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	51	2	3.00362	3.8837599999999997	4.7639	0.0811309	0.027769	0.177951	0.12074
chr4	23794456	23794554	2208632	0	-	0.367347	(0.36,0.39]	chr4	223244	26	UTR3	UTR3:EXON_MRNA:INTRON	PPARGC1A	ENSG00000109819.9	ENST00000509702.5:ENST00000264867.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	3.00362	3.8837599999999997	4.7639	0.0811309	0.027769	0.177951	0.12074
chr17	82150161	82150260	6987875	0	-	0.626263	(0.58,1]	chr17	714577	144	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000419322.6:ENST00000392346.6:ENST00000582040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	53	2	2.45703	3.8836950000000003	5.31036	0.0933945	0.00312721	0.188571	0.0311915
chr19	1173623	1173723	7305789	0	-	0.66	(0.58,1]	chr19	753060	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.50987	3.88359	5.25731	0.0865901	0.00358178	0.182221	0.0342681
chr10	131918387	131918487	4616200	0	+	0.5	(0.485,0.523]	chr10	441069	54	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	60	2	2.74113	3.88343	5.02573	0.0719691	0.00985879	0.168159	0.0664239
chr11	96296588	96296688	5113102	0	-	0.35	(0.33,0.36]	chr11	496566	2027	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	3.27029	3.883085	4.49588	0.0345169	0.033477	0.133139	0.126034
chr19	950399	950498	7185350	0	+	0.646465	(0.58,1]	chr19	730741	173	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	740	2	3.35865	3.883085	4.40752	3.53174e-4	2.92224e-4	0.010742	0.00595966
chr17	57109924	57110024	6759616	0	+	0.59	(0.58,1]	chr17	681988	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	AKAP1	ENSG00000121057.13	ENST00000337714.8:ENST00000571629.5:ENST00000621116.4:ENST00000572557.5:ENST00000481416.5:ENST00000539273.5:ENST00000314126.4:ENST00000576295.5:ENST00000573326.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	72	2	2.09894	3.8829599999999997	5.66698	0.0411332	0.0102927	0.147756	0.0684871
chr12	6338900	6338999	5362096	0	-	0.484848	(0.45,0.485]	chr12	525042	43	INTRON	INTRON	TNFRSF1A	ENSG00000067182.8	ENST00000534885.5:ENST00000162749.7:ENST00000543995.5:ENST00000540022.5:ENST00000539372.5:ENST00000366159.8:ENST00000543048.5:ENST00000440083.6:ENST00000536194.1:ENST00000535958.1:ENST00000538363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	2.92826	3.882905	4.83755	0.06646	0.0301249	0.162385	0.126768
chr2	78079346	78079446	1208243	0	-	0.3	(0.29,0.33]	chr2	130071	1391	INTRON	INTRON	ENSG00000227088	ENSG00000227088.2	ENST00000667782.1	lncRNA	lncRNA	lncRNA	lncRNA	2	65	2	2.40711	3.88279	5.35847	0.0373223	0.0269557	0.139793	0.112113
chr1	165855687	165855787	262756	0	+	0.56	(0.523,0.58]	chr1	31044	274	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.74768	3.882225	5.01677	0.0482765	0.0411359	0.147756	0.144601
chr12	56167659	56167759	5435461	0	-	0.53	(0.523,0.58]	chr12	533869	2	SS5_PROX	SS5_PROX:INTRON	SMARCC2	ENSG00000139613.12	ENST00000550164.6:ENST00000394023.7:ENST00000347471.8:ENST00000267064.8:ENST00000552674.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.74768	3.882225	5.01677	0.0482765	0.0411359	0.147756	0.144601
chr2	241415789	241415887	1076818	0	+	0.530612	(0.523,0.58]	chr2	116969	20	INTRON	INTRON	FARP2	ENSG00000006607.14	ENST00000264042.8:ENST00000627550.2:ENST00000373287.8:ENST00000471447.5:ENST00000485051.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	48	2	2.74768	3.882225	5.01677	0.0482765	0.0411359	0.147756	0.144601
chr5	62452732	62452832	2429918	0	+	0.49	(0.485,0.523]	chr5	242137	4	INTRON	INTRON	IPO11	ENSG00000086200.17	ENST00000424533.5:ENST00000325324.11:ENST00000409296.7:ENST00000506905.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	2.85817	3.8817950000000003	4.90542	0.0561086	0.0334631	0.154188	0.133139
chr17	15469615	15469715	6860131	0	-	0.57	(0.523,0.58]	chr17	695071	21	INTRON	INTRON	TVP23C-CDRT4:CDRT4	ENSG00000259024.6:ENSG00000239704.11	ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	3.18279	3.881685	4.58058	0.0860403	0.0168396	0.181766	0.0919482
chr11	70632529	70632629	5060598	0	-	0.4	(0.39,0.419]	chr11	492663	1292	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	51	2	2.61462	3.881425	5.14823	0.0572875	0.0501234	0.174149	0.147892
chr14	89337153	89337253	6027474	0	-	0.4	(0.39,0.419]	chr14	591456	35	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	2.61462	3.881425	5.14823	0.0572875	0.0501234	0.174149	0.147892
chr2	53982974	53983074	795030	0	+	0.41	(0.39,0.419]	chr2	90708	77	INTRON	INTRON	ACYP2	ENSG00000170634.13	ENST00000458030.3:ENST00000422521.2:ENST00000607452.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.61462	3.881425	5.14823	0.0572875	0.0501234	0.174149	0.147892
chr7	138476997	138477097	3502170	0	+	0.38	(0.36,0.39]	chr7	337496	153	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	70	2	2.71329	3.8813899999999997	5.04949	0.0563927	0.0215921	0.154188	0.105648
chr21	46139452	46139552	7679700	0	-	0.62	(0.58,1]	chr21	802957	4	SS3_PROX	SS3_PROX:INTRON	FTCD	ENSG00000160282.15	ENST00000494498.2:ENST00000291670.9:ENST00000397748.5:ENST00000498355.6:ENST00000460011.6:ENST00000397746.8:ENST00000397743.1:ENST00000488577.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	58	2	3.09824	3.8811999999999998	4.66416	0.0341637	0.0144381	0.125129	0.0833845
chr10	112194548	112194647	4760732	0	-	0.383838	(0.36,0.39]	chr10	455255	109	INTRON	INTRON	GPAM	ENSG00000119927.14	ENST00000480130.5:ENST00000498541.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	76	2	3.063	3.8811600000000004	4.69932	0.0877431	0.00991943	0.183437	0.0666221
chr17	29083233	29083331	6875932	0	-	0.530612	(0.523,0.58]	chr17	697789	4	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000529578.5:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000546105.5:ENST00000527312.5:ENST00000531438.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	65	2	2.24954	3.881005	5.51247	0.0500176	0.0230387	0.161481	0.102982
chr17	49016531	49016631	6750214	0	+	0.47	(0.45,0.485]	chr17	680309	21	INTRON	INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2:ENST00000515586.5:ENST00000499130.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	2.50637	3.8807349999999996	5.2551	0.0373953	0.0310626	0.130656	0.127822
chr3	50330080	50330180	1775224	0	-	0.49	(0.485,0.523]	chr3	184321	4	UTR3	UTR3:EXON_MRNA	RASSF1	ENSG00000068028.18	ENST00000327761.7:ENST00000616212.4:ENST00000482447.1:ENST00000357043.6:ENST00000395117.6:ENST00000359365.9:ENST00000395126.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.79862	3.8805050000000003	4.96239	0.0518747	0.0375966	0.148503	0.139924
chr15	83049174	83049274	6342483	0	-	0.46	(0.45,0.485]	chr15	625230	69	INTRON	INTRON	BTBD1	ENSG00000064726.10	ENST00000261721.9:ENST00000379403.2:ENST00000559652.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	66	2	2.3351	3.880485	5.42587	0.0438295	0.0290571	0.153511	0.116079
chr13	98280398	98280498	5635035	0	+	0.58	(0.523,0.58]	chr13	553480	352	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.54344	3.8803549999999998	5.21727	0.0599121	0.0361597	0.177269	0.127853
chr12	56597057	56597154	5437623	0	-	0.597938	(0.58,1]	chr12	534676	16	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	2.50339	3.88035	5.25731	0.0468259	0.00358178	0.143232	0.0342681
chr8	122788845	122788945	3909724	0	+	0.48	(0.45,0.485]	chr8	373449	65	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6	protein_coding	protein_coding	protein_coding	protein_coding	4	223	2	3.11841	3.880055	4.6417	0.00453771	0.00307653	0.0401214	0.0354212
chr14	91221827	91221923	5899575	0	+	0.479167	(0.45,0.485]	chr14	576435	12	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	91	2	2.01096	3.880045	5.74913	0.044492	0.017574	0.153734	0.0906595
chr11	47518867	47518967	5036062	0	-	0.5	(0.485,0.523]	chr11	487589	41	INTRON	INTRON	CELF1	ENSG00000149187.19	ENST00000310513.10:ENST00000687097.1:ENST00000531165.5:ENST00000532048.5:ENST00000530151.5:ENST00000525841.5:ENST00000528434.5:ENST00000543178.5:ENST00000526419.1:ENST00000528538.5:ENST00000526277.1	protein_coding	protein_coding	protein_coding	protein_coding	2	128	2	3.60466	3.87952	4.15438	0.0185431	0.00156066	0.0929479	0.0194067
chr21	38808263	38808363	7620625	0	+	0.5	(0.485,0.523]	chr21	796140	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ETS2	ENSG00000157557.13	ENST00000360214.8:ENST00000665212.1:ENST00000667466.1:ENST00000360938.8:ENST00000432278.5:ENST00000666778.1:ENST00000653642.1	protein_coding	protein_coding	protein_coding	protein_coding	5	303	2	3.75524	3.87948	4.00372	0.00436003	6.77954e-4	0.0427656	0.0108407
chr7	79418570	79418670	3626185	0	-	0.43	(0.419,0.45]	chr7	349238	25	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000628997.1:ENST00000636234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	76	2	3.00342	3.87916	4.7549	0.0888907	0.0118386	0.183874	0.0746945
chr16	89305152	89305205	6659861	0	-	0.735849	(0.58,1]	chr16	666660	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	292	2	3.46329	3.8785050000000005	4.29372	0.00494085	7.77775e-5	0.0460306	0.00227427
chr10	75726448	75726548	4523428	0	+	0.42	(0.419,0.45]	chr10	432271	785	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	3.06656	3.878445	4.69033	0.0958674	0.0252325	0.189038	0.114921
chr14	19098495	19098594	5754325	0	+	0.676768	(0.58,1]	chr14	564239	47	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000619938.1:ENST00000644980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	82	2	1.92256	3.878155	5.83375	0.046259	0.00751249	0.155604	0.0576451
chr8	128038980	128039080	3920270	0	+	0.6	(0.58,1]	chr8	374315	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1	lncRNA	lncRNA	lncRNA	lncRNA	3	83	2	3.06099	3.878045	4.6951	0.0521567	0.00372067	0.148503	0.0350519
chr7	105937374	105937474	3444135	0	+	0.46	(0.45,0.485]	chr7	333440	133	INTRON	INTRON	CDHR3	ENSG00000128536.16	ENST00000470188.5:ENST00000488386.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	132	2	3.40384	3.8780200000000002	4.3522	0.027533	9.98881e-4	0.112782	0.0142216
chr19	53521799	53521894	7290498	0	+	0.547368	(0.523,0.58]	chr19	750312	10	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	ZNF331	ENSG00000130844.19	ENST00000647573.1:ENST00000648236.1:ENST00000513929.6:ENST00000253144.13:ENST00000649326.1:ENST00000650177.1:ENST00000649780.1:ENST00000649816.1:ENST00000502248.5:ENST00000511593.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	77	2	3.51606	3.8778949999999996	4.23973	0.0444247	0.0216194	0.153511	0.100615
chr13	113216057	113216156	5657368	0	+	0.545455	(0.523,0.58]	chr13	555523	56	INTRON	INTRON	CUL4A	ENSG00000139842.15	ENST00000375441.7:ENST00000326335.8:ENST00000451881.5:ENST00000617546.4:ENST00000488558.2:ENST00000375440.9:ENST00000474116.5:ENST00000494985.5:ENST00000463426.5:ENST00000498562.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	133	2	3.8181	3.8778449999999998	3.93759	0.0103671	0.0037097	0.0686683	0.0349741
chr16	21977046	21977146	6420024	0	+	0.49	(0.485,0.523]	chr16	634956	2	INTRON	INTRON	UQCRC2	ENSG00000140740.11	ENST00000268379.9:ENST00000561553.5:ENST00000563898.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.97038	3.87732	4.78426	0.0660335	0.0267011	0.162385	0.118343
chr17	57468001	57468101	6761892	0	+	0.5	(0.485,0.523]	chr17	682137	229	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	2.97038	3.87732	4.78426	0.0660335	0.0267011	0.162385	0.118343
chr7	47377115	47377215	3587563	0	-	0.47	(0.45,0.485]	chr7	346036	71	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	2.28891	3.8772450000000003	5.46558	0.0479351	0.0273644	0.159092	0.112372
chr8	127204016	127204114	4067047	0	-	0.306122	(0.29,0.33]	chr8	387456	4	INTRON	INTRON	CASC19	ENSG00000254166.3	ENST00000641912.1:ENST00000641991.1:ENST00000641425.1:ENST00000641496.1:ENST00000641013.1:ENST00000641174.1:ENST00000641487.1:ENST00000641321.1:ENST00000641719.1:ENST00000642010.1:ENST00000641056.1:ENST00000641642.1:ENST00000641362.1:ENST00000641365.1:ENST00000642077.1:ENST00000641179.1:ENST00000642126.1:ENST00000641411.1:ENST00000641298.1:ENST00000641001.1:ENST00000641674.2:ENST00000641828.1:ENST00000641029.1:ENST00000641547.1:ENST00000642134.1:ENST00000641696.1:ENST00000641480.1:ENST00000641187.1:ENST00000641934.1:ENST00000641681.1:ENST00000641867.1:ENST00000641418.1:ENST00000641414.2:ENST00000641733.1:ENST00000642142.1:ENST00000641964.1:ENST00000641880.1:ENST00000641171.1:ENST00000641625.1:ENST00000642118.2:ENST00000642018.2:ENST00000641309.2:ENST00000641704.2:ENST00000641106.2:ENST00000663628.1:ENST00000641153.2:ENST00000641218.2:ENST00000641488.2:ENST00000641786.1:ENST00000641523.2:ENST00000641060.1	lncRNA	lncRNA	lncRNA	lncRNA	3	80	2	2.48376	3.87715	5.27054	0.0308815	0.0205132	0.119556	0.102713
chrX	153643406	153643504	7960796	0	+	0.591837	(0.58,1]	chrX	833164	4	INTRON	INTRON	DUSP9	ENSG00000130829.18	ENST00000477033.1:ENST00000370167.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	61	2	3.26123	3.876195	4.49116	0.0257049	0.0207449	0.109543	0.102713
chr1	204083874	204083973	322158	0	+	0.525253	(0.523,0.58]	chr1	36272	53	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1:ENST00000528591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	2.68276	3.876165	5.06957	0.0464998	0.0448011	0.156036	0.140478
chr7	2102332	2102432	3531258	0	-	0.56	(0.523,0.58]	chr7	341009	132	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000444373.6:ENST00000421113.5:ENST00000464742.5:ENST00000491858.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	2.68276	3.876165	5.06957	0.0464998	0.0448011	0.156036	0.140478
chr7	47393901	47394000	3587731	0	-	0.565657	(0.523,0.58]	chr7	346036	239	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	2.68276	3.876165	5.06957	0.0464998	0.0448011	0.156036	0.140478
chr17	29409798	29409898	6708516	0	+	0.39	(0.36,0.39]	chr17	673645	58	INTRON	INTRON	TAOK1	ENSG00000160551.12	ENST00000261716.8:ENST00000583121.5:ENST00000587277.1:ENST00000536202.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	88	2	2.34379	3.8760399999999997	5.40829	0.0785367	0.00581205	0.175203	0.0472624
chr18	35607174	35607274	7046893	0	+	0.45	(0.419,0.45]	chr18	719466	150	INTRON	INTRON	GALNT1	ENSG00000141429.14	ENST00000586725.1:ENST00000269195.6:ENST00000591924.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.7644	3.876035	4.98767	0.0669167	0.0447981	0.16272	0.154539
chr16	52541643	52541743	6589806	0	-	0.31	(0.29,0.33]	chr16	658709	217	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.89841	3.87563	4.85285	0.0567079	0.0313146	0.154343	0.127822
chr1	8684688	8684787	394401	0	-	0.464646	(0.45,0.485]	chr1	45065	279	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000468247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	178	2	3.62759	3.87559	4.12359	0.0080355	0.00212514	0.0599656	0.0240165
chr16	89489376	89489468	6661729	0	-	0.728261	(0.58,1]	chr16	666757	3	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	202	2	3.6284	3.875565	4.12273	0.0054479	2.98898e-4	0.0486984	0.00606265
chr19	15643207	15643306	7215385	0	+	0.323232	(0.29,0.33]	chr19	737133	12	INTRON	INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	133	2	3.75928	3.875425	3.99157	0.00879016	0.0045073	0.0630845	0.0400499
chr19	19074207	19074307	7225611	0	+	0.52	(0.485,0.523]	chr19	739606	97	INTRON	INTRON	SLC25A42	ENSG00000181035.14	ENST00000318596.8:ENST00000597661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	65	2	2.23742	3.87516	5.5129	0.0515447	0.0229047	0.165949	0.102982
chr21	45498359	45498458	7631288	0	+	0.777778	(0.58,1]	chr21	797812	3	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.27185	3.87512	5.47839	0.0433824	0.0145198	0.152119	0.0823104
chr19	57841126	57841222	7299521	0	+	0.5	(0.485,0.523]	chr19	751827	4	CDS	CDS:EXON_MRNA:INTRON	ENSG00000268750:ZNF587B	ENSG00000268750.7:ENSG00000269343.9	ENST00000597134.5:ENST00000651253.2:ENST00000596498.2:ENST00000593873.6:ENST00000603271.1:ENST00000594328.1:ENST00000598031.1:ENST00000442832.8:ENST00000594901.2:ENST00000604231.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	2.53228	3.874985	5.21769	0.0614918	0.0359739	0.18013	0.127853
chr9	112433237	112433336	4219782	0	+	0.434343	(0.419,0.45]	chr9	400265	139	INTRON	INTRON	HSDL2	ENSG00000119471.15	ENST00000398803.1:ENST00000488101.5:ENST00000398805.8:ENST00000467434.5:ENST00000480881.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	69	2	2.30548	3.874975	5.44447	0.04996	0.0364384	0.161395	0.128173
chr1	1053665	1053752	1302	0	+	0.701149	(0.58,1]	chr1	285	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	54	2	2.79178	3.87496	4.95814	0.0565563	0.0074469	0.154343	0.0553519
chr11	72702404	72702504	5069932	0	-	0.6	(0.58,1]	chr11	493380	1	SS5_PROX	SS5_PROX:INTRON	ARAP1	ENSG00000186635.15	ENST00000359373.9:ENST00000393609.8:ENST00000465814.5:ENST00000334211.12:ENST00000393605.7:ENST00000426523.5:ENST00000429686.5:ENST00000427971.6:ENST00000452383.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	111	2	3.48889	3.8748899999999997	4.26089	0.016972	7.87512e-4	0.0889149	0.0120243
chr17	82909407	82909507	6819989	0	+	0.62	(0.58,1]	chr17	689430	1	SS5_PROX	SS5_PROX:INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	111	2	3.56577	3.874815	4.18386	0.0146864	9.90719e-4	0.0826843	0.0141138
chr16	81549580	81549680	6508789	0	+	0.46	(0.45,0.485]	chr16	645911	537	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	133	2	3.73584	3.8748000000000005	4.01376	0.015867	0.0024644	0.0859576	0.0265925
chr7	100567730	100567828	3430628	0	+	0.602041	(0.58,1]	chr7	331970	29	UTR3	UTR3:EXON_MRNA	AGFG2	ENSG00000106351.13	ENST00000300176.9	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.15496	3.874715	5.59447	0.0548868	0.0117666	0.168717	0.0737098
chr16	85599420	85599519	6519067	0	+	0.606061	(0.58,1]	chr16	646396	427	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.63525	3.8744	5.11355	0.0459151	0.0271806	0.154743	0.112113
chr19	576975	577074	7184164	0	+	0.666667	(0.58,1]	chr19	730456	12	INTRON	INTRON	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000613627.5:ENST00000576925.4:ENST00000573216.5:ENST00000572899.6:ENST00000333511.9:ENST00000353555.9:ENST00000590218.4:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000574970.2:ENST00000576984.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	177	2	3.82654	3.874225	3.92191	0.00290717	0.00275362	0.0342042	0.0285628
chr2	120114744	120114843	886916	0	+	0.333333	(0.33,0.36]	chr2	100366	64	INTRON	INTRON	EPB41L5	ENSG00000115109.14	ENST00000263713.10:ENST00000443902.6:ENST00000452780.1:ENST00000461128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	3.03916	3.87405	4.70894	0.0798152	0.0250322	0.176933	0.114418
chr7	111290992	111291092	3684974	0	-	0.36	(0.33,0.36]	chr7	354615	3271	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	3.03916	3.87405	4.70894	0.0798152	0.0250322	0.176933	0.114418
chr10	75726048	75726148	4523424	0	+	0.4	(0.39,0.419]	chr10	432271	781	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	3.04938	3.8736800000000002	4.69798	0.088901	0.0253994	0.183874	0.115502
chr8	22387166	22387265	3770220	0	+	0.353535	(0.33,0.36]	chr8	362727	73	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.52202	3.8732499999999996	5.22448	0.100822	0.00791583	0.196131	0.057762
chr8	127911007	127911106	3918963	0	+	0.474747	(0.45,0.485]	chr8	374216	81	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000521122.2:ENST00000520913.2:ENST00000519481.6:ENST00000651568.1:ENST00000669082.1:ENST00000665166.1:ENST00000656948.1:ENST00000671088.1:ENST00000664924.1:ENST00000670204.1:ENST00000652695.1:ENST00000670602.1:ENST00000651664.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1:ENST00000653406.1	lncRNA	lncRNA	lncRNA	lncRNA	2	66	2	2.58493	3.87321	5.16149	0.0427653	0.0263561	0.13762	0.118015
chr10	34682971	34683071	4670486	0	-	0.37	(0.36,0.39]	chr10	445537	34	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.18563	3.873195	4.56076	0.103289	0.0191961	0.197541	0.0994526
chr17	37022713	37022813	6726427	0	+	0.39	(0.36,0.39]	chr17	675960	13	INTRON	INTRON	AATF	ENSG00000275700.6	ENST00000680340.1:ENST00000680356.1:ENST00000616434.2:ENST00000680579.1:ENST00000681800.1:ENST00000680330.1:ENST00000619387.5:ENST00000679997.1:ENST00000681062.1:ENST00000679881.1:ENST00000680782.1:ENST00000679600.1:ENST00000616392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	3.18563	3.873195	4.56076	0.103289	0.0191961	0.197541	0.0994526
chr17	77306142	77306242	6803412	0	+	0.55	(0.523,0.58]	chr17	686716	109	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	176	2	3.44363	3.8731350000000004	4.30264	0.00528859	0.00314594	0.047841	0.0313262
chr6	2268312	2268411	2824607	0	+	0.525253	(0.523,0.58]	chr6	277256	21	INTRON	INTRON	GMDS-DT	ENSG00000250903.10	ENST00000657072.1:ENST00000529893.6:ENST00000659523.1:ENST00000659643.1:ENST00000660978.1:ENST00000691004.1:ENST00000664738.1:ENST00000532124.6:ENST00000691547.1:ENST00000663428.1:ENST00000654526.1:ENST00000670895.1:ENST00000532564.8:ENST00000685772.1:ENST00000687264.1:ENST00000660533.1:ENST00000531092.6:ENST00000524770.6:ENST00000657589.1:ENST00000607519.2:ENST00000456943.6:ENST00000525811.5:ENST00000534441.5:ENST00000533653.5:ENST00000534468.1:ENST00000530346.6:ENST00000662000.1:ENST00000665610.1:ENST00000654970.1	lncRNA	lncRNA	lncRNA	lncRNA	3	170	2	3.77551	3.87298	3.97045	0.0097704	0.00126726	0.0666676	0.0168021
chr2	46302032	46302132	784688	0	+	0.39	(0.36,0.39]	chr2	89746	37	INTRON	INTRON	EPAS1	ENSG00000116016.14	ENST00000460015.1:ENST00000449347.5:ENST00000263734.5:ENST00000467888.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	152	2	3.59265	3.8729	4.15315	0.00865815	0.00786519	0.0623824	0.0576321
chr8	127963920	127964020	3919499	0	+	0.44	(0.419,0.45]	chr8	374241	206	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1	lncRNA	lncRNA	lncRNA	lncRNA	2	69	2	2.26209	3.8725950000000005	5.4831	0.0541225	0.0345118	0.167824	0.126025
chr16	85456208	85456308	6517633	0	+	0.54	(0.523,0.58]	chr16	646391	969	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	3.1364	3.87254	4.60868	0.0400336	0.0226775	0.134064	0.108193
chrX	133825906	133826006	8114426	0	-	0.39	(0.36,0.39]	chrX	845523	714	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	233	2	3.77666	3.872385	3.96811	0.0164162	5.39344e-4	0.0877406	0.00920925
chr9	129500332	129500430	4250780	0	+	0.561224	(0.523,0.58]	chr9	404726	15	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	134	2	3.01567	3.872255	4.72884	0.0482042	2.96905e-4	0.144601	0.00603096
chr12	23949652	23949703	5388524	0	-	0.392157	(0.39,0.419]	chr12	528201	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2:ENST00000536729.2:ENST00000446891.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	79	2	3.18482	3.872125	4.55943	0.104562	0.0074723	0.19835	0.0555092
chr1	43595865	43595963	107409	0	+	0.612245	(0.58,1]	chr1	13240	29	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	4	83	2	1.76073	3.871975	5.98322	0.0647557	0.00562007	0.185835	0.0493906
chr13	99246222	99246322	5637302	0	+	0.33	(0.29,0.33]	chr13	553710	12	INTRON	INTRON	UBAC2	ENSG00000134882.16	ENST00000355700.9:ENST00000403766.8:ENST00000468067.5:ENST00000473091.5:ENST00000376440.6:ENST00000494576.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	2.71956	3.8717550000000003	5.02395	0.0445554	0.0442313	0.153511	0.140478
chr15	22557492	22557592	6059849	0	+	0.48	(0.45,0.485]	chr15	594970	4	SS5_PROX	SS5_PROX:INTRON	HERC2P2	ENSG00000276550.5	ENST00000613386.4:ENST00000619021.4	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	49	2	3.03233	3.871715	4.7111	0.0781398	0.0244076	0.175203	0.113311
chr10	47531583	47531682	4680498	0	-	0.40404	(0.39,0.419]	chr10	446443	77	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	1	62	2	2.58263	3.871555	5.16048	0.0970705	0.00999413	0.190588	0.0667545
chr2	120098350	120098450	886745	0	+	0.5	(0.485,0.523]	chr2	100342	47	INTRON	INTRON	EPB41L5	ENSG00000115109.14	ENST00000263713.10:ENST00000443902.6:ENST00000331393.8:ENST00000443124.5:ENST00000452780.1:ENST00000489017.5:ENST00000461128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	213	2	3.14709	3.8715200000000003	4.59595	0.00392018	0.00299988	0.0366152	0.0348875
chr12	49004940	49005040	5223293	0	+	0.49	(0.485,0.523]	chr12	506970	59	INTRON	INTRON	DDN-AS1	ENSG00000257913.3	ENST00000552933.2:ENST00000547866.1:ENST00000552284.1:ENST00000547395.1	lncRNA	lncRNA	lncRNA	lncRNA	1	48	2	3.02337	3.871505	4.71964	0.0718646	0.023933	0.168159	0.111785
chr16	89302531	89302630	6659834	0	-	0.494949	(0.485,0.523]	chr16	666658	5	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	326	2	3.64095	3.8714750000000002	4.102	0.00804813	1.6432e-4	0.0600196	0.0039368
chr19	23324674	23324774	7358030	0	-	0.53	(0.523,0.58]	chr19	762771	142	INTRON	INTRON	ZNF91	ENSG00000167232.14	ENST00000596528.1:ENST00000596989.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	134	2	3.75634	3.87147	3.9866	0.00948884	0.00434055	0.0656203	0.0390182
chr1	20781534	20781632	414201	0	-	0.346939	(0.33,0.36]	chr1	48441	6	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000424732.5:ENST00000417710.5:ENST00000375000.5:ENST00000437575.5:ENST00000419490.5:ENST00000414993.1:ENST00000443615.1	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	2.68323	3.8713	5.05937	0.0814187	0.0112642	0.178482	0.071709
chr12	57754535	57754635	5442148	0	-	0.5	(0.485,0.523]	chr12	535644	22	INTRON	INTRON	CDK4	ENSG00000135446.17	ENST00000552862.1	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.77877	3.8711900000000004	4.96361	0.0682166	0.0112713	0.164526	0.071709
chr11	68508855	68508955	4883963	0	+	0.31	(0.29,0.33]	chr11	470702	32	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	3.15459	3.87114	4.58769	0.0806047	0.0184236	0.177452	0.0964756
chr10	92691652	92691735	4550918	0	+	0.554217	(0.523,0.58]	chr10	434377	2	EXON_MRNA	EXON_MRNA:INTRON	HHEX	ENSG00000152804.11	ENST00000282728.10:ENST00000551454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	99	2	2.01731	3.87109	5.72487	0.0354235	0.0163679	0.137983	0.0875379
chr2	100903632	100903732	859248	0	+	0.59	(0.58,1]	chr2	97321	566	INTRON	INTRON	NPAS2	ENSG00000170485.17	ENST00000335681.10:ENST00000427413.5	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.48056	3.87097	5.26138	0.0277636	0.021217	0.12074	0.0996078
chr10	79167526	79167626	4533032	0	+	0.48	(0.45,0.485]	chr10	432438	50	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.62955	3.870925	5.1123	0.0530416	0.0458344	0.167062	0.142336
chr20	62886813	62886913	7585177	0	-	0.47	(0.45,0.485]	chr20	792847	40	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.62955	3.870925	5.1123	0.0530416	0.0458344	0.167062	0.142336
chr2	173188517	173188616	957960	0	+	0.494949	(0.485,0.523]	chr2	105244	5	INTRON	INTRON	MAP3K20	ENSG00000091436.17	ENST00000539448.5:ENST00000409176.6:ENST00000468408.5:ENST00000338983.7:ENST00000375213.8:ENST00000476618.5:ENST00000480606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	48	2	2.67159	3.87079	5.06999	0.0478226	0.0445854	0.1588	0.140478
chr7	213666	213766	3305791	0	+	0.5	(0.485,0.523]	chr7	320161	43	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.67159	3.87079	5.06999	0.0478226	0.0445854	0.1588	0.140478
chr10	46803036	46803135	4484713	0	+	0.272727	[0,0.29]	chr10	428921	7	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000688259.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	62	2	2.35245	3.870625	5.3888	0.0395239	0.0183035	0.143388	0.0922556
chr11	16982679	16982779	5011395	0	-	0.58	(0.523,0.58]	chr11	484333	693	INTRON	INTRON	PLEKHA7	ENSG00000166689.17	ENST00000531066.6:ENST00000355661.7:ENST00000532079.1:ENST00000529213.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	64	2	2.52319	3.8702300000000003	5.21727	0.0361597	0.0287266	0.127853	0.123764
chr19	19430581	19430681	7226988	0	+	0.6	(0.58,1]	chr19	739816	22	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000494516.6:ENST00000360315.7:ENST00000609040.5:ENST00000417582.6:ENST00000683918.1:ENST00000448576.6:ENST00000432704.5:ENST00000404158.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.97713	3.869985	4.76284	0.0471737	0.0226795	0.143232	0.108193
chr2	239084242	239084342	1389517	0	-	0.67	(0.58,1]	chr2	148603	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000690129.1:ENST00000487617.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	2.97713	3.869985	4.76284	0.0471737	0.0226795	0.143232	0.108193
chr3	129393995	129394095	1911557	0	-	0.64	(0.58,1]	chr3	194157	2	SS3_PROX	SS3_PROX:INTRON	RPL32P3	ENSG00000251474.7	ENST00000510078.5:ENST00000507287.5:ENST00000687239.1:ENST00000514355.5:ENST00000507238.5:ENST00000515866.5:ENST00000499631.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	44	2	2.97713	3.869985	4.76284	0.0471737	0.0226795	0.143232	0.108193
chr7	652236	652336	3524613	0	-	0.59	(0.58,1]	chr7	340404	444	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000430040.5:ENST00000414568.5:ENST00000417852.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.97713	3.869985	4.76284	0.0471737	0.0226795	0.143232	0.108193
chr2	39107340	39107440	1127227	0	-	0.46	(0.45,0.485]	chr2	123480	90	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	139	2	3.73402	3.86979	4.00556	0.00992252	0.0049945	0.0671959	0.0428203
chr11	64142770	64142869	5049005	0	-	0.59596	(0.58,1]	chr11	490257	160	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	44	2	2.84993	3.8696900000000003	4.88945	0.0388928	0.0297842	0.131324	0.126591
chr19	56838113	56838211	7410702	0	-	0.622449	(0.58,1]	chr19	771674	4	INTRON	INTRON	ZIM2:PEG3	ENSG00000269699.7:ENSG00000198300.14	ENST00000593711.6:ENST00000689654.1:ENST00000629319.3:ENST00000599935.5:ENST00000693159.1:ENST00000650111.1:ENST00000648694.1:ENST00000326441.15:ENST00000649233.1:ENST00000649680.1:ENST00000649876.1:ENST00000650632.1:ENST00000650102.1:ENST00000649735.1:ENST00000647621.1:ENST00000598410.5:ENST00000593695.5:ENST00000599577.5:ENST00000594389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	267	2	3.86807	3.869675	3.87128	0.00202412	6.66992e-4	0.0283135	0.0107349
chr5	73698674	73698773	2452417	0	+	0.434343	(0.419,0.45]	chr5	244920	134	INTRON	INTRON	ARHGEF28	ENSG00000214944.10	ENST00000545377.5:ENST00000296794.10:ENST00000513042.7:ENST00000509848.5:ENST00000426542.6:ENST00000437974.5	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.64776	3.869545	5.09133	0.0586308	0.0551054	0.169163	0.155565
chr2	3293105	3293205	1081038	0	-	0.47	(0.45,0.485]	chr2	117633	104	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	67	2	2.73028	3.869435	5.00859	0.052901	0.0192493	0.14912	0.0994526
chr1	67409208	67409308	505872	0	-	0.48	(0.45,0.485]	chr1	60117	15	UTR3	UTR3:EXON_MRNA	SERBP1	ENSG00000142864.15	ENST00000370994.8:ENST00000361219.11	protein_coding	protein_coding	protein_coding	protein_coding	2	131	2	3.57937	3.86908	4.15879	0.0206537	0.00168387	0.0984724	0.0204246
chr21	46144125	46144223	7679748	0	-	0.438776	(0.419,0.45]	chr21	802962	15	INTRON	INTRON	FTCD	ENSG00000160282.15	ENST00000291670.9:ENST00000397748.5:ENST00000498355.6:ENST00000397746.8:ENST00000397743.1:ENST00000488577.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	91	2	2.38438	3.8687750000000003	5.35317	0.0774181	0.00714797	0.175203	0.0541241
chr8	22389054	22389153	3770239	0	+	0.535354	(0.523,0.58]	chr8	362727	92	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.08569	3.8686300000000005	4.65157	0.0787008	0.020773	0.175203	0.102713
chr15	25017773	25017871	6064031	0	+	0.367347	(0.36,0.39]	chr15	595414	27	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	1	50	2	2.79528	3.86861	4.94194	0.064883	0.0413701	0.162218	0.148333
chr8	118042620	118042720	4049049	0	-	0.4	(0.39,0.419]	chr8	386022	255	INTRON	INTRON	EXT1	ENSG00000182197.13	ENST00000378204.7:ENST00000437196.1:ENST00000436216.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	123	2	1.63359	3.868305	6.10302	0.0696264	0.0120635	0.194752	0.0745226
chr2	151797099	151797199	1280588	0	-	0.41	(0.39,0.419]	chr2	137920	48	INTRON	INTRON	ARL5A	ENSG00000162980.17	ENST00000446896.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	82	2	1.96828	3.867925	5.76757	0.0640398	0.0204917	0.184676	0.0979776
chr13	98144191	98144291	5633667	0	+	0.5	(0.485,0.523]	chr13	553452	3	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000600648.1:ENST00000596580.2:ENST00000376581.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	194	2	3.05773	3.8678299999999997	4.67793	0.00856934	0.00255619	0.0612055	0.0320235
chr20	38428455	38428553	7561112	0	-	0.530612	(0.523,0.58]	chr20	789772	9	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000423536.6:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	77	2	2.07805	3.86777	5.65749	0.0476935	0.0182707	0.158666	0.0921579
chr6	158562130	158562230	3063916	0	+	0.44	(0.419,0.45]	chr6	297687	15	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	4	95	2	1.97572	3.867735	5.75975	0.0516998	0.0231013	0.166375	0.102982
chr8	127173889	127173989	4066725	0	-	0.43	(0.419,0.45]	chr8	387399	3	SS5_PROX	SS5_PROX:INTRON	CASC19	ENSG00000254166.3	ENST00000642100.1:ENST00000641912.1:ENST00000641421.1:ENST00000641701.1:ENST00000641991.1:ENST00000641588.1:ENST00000642088.1:ENST00000641425.1:ENST00000641706.1:ENST00000641496.1:ENST00000641013.1:ENST00000641262.1:ENST00000641174.1:ENST00000642102.1:ENST00000641615.1:ENST00000641582.1:ENST00000641487.1:ENST00000641321.1:ENST00000641719.1:ENST00000642010.1:ENST00000641578.1:ENST00000641510.1:ENST00000641604.1:ENST00000641056.1:ENST00000641642.1:ENST00000641362.1:ENST00000641365.1:ENST00000642077.1:ENST00000641179.1:ENST00000642126.1:ENST00000641411.1:ENST00000641357.1:ENST00000641746.2:ENST00000641073.1:ENST00000641298.1:ENST00000641001.1:ENST00000641674.2:ENST00000641828.1:ENST00000641029.1:ENST00000641547.1:ENST00000642134.1:ENST00000641696.1:ENST00000641480.1:ENST00000641187.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	95	2	1.97572	3.867735	5.75975	0.0516998	0.0231013	0.166375	0.102982
chr11	70575029	70575129	5060023	0	-	0.55	(0.523,0.58]	chr11	492663	717	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	58	2	2.53438	3.8677099999999998	5.20104	0.0957531	0.00648051	0.189038	0.0503748
chr2	10366877	10366977	719068	0	+	0.57	(0.523,0.58]	chr2	84032	121	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.61478	3.8676399999999997	5.1205	0.052707	0.0416463	0.167062	0.136301
chr21	15050564	15050664	7640868	0	-	0.37	(0.36,0.39]	chr21	799123	66	INTRON	INTRON	NRIP1	ENSG00000180530.11	ENST00000400202.5:ENST00000318948.7:ENST00000400199.5:ENST00000638122.1:ENST00000637963.1:ENST00000637630.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	2.85025	3.867625	4.885	0.0697729	0.0373341	0.167185	0.139793
chr7	156679486	156679586	3738895	0	-	0.37	(0.36,0.39]	chr7	359430	18	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	LMBR1	ENSG00000105983.23	ENST00000430825.3:ENST00000353442.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	2.85025	3.867625	4.885	0.0697729	0.0373341	0.167185	0.139793
chr16	85586333	85586433	6518936	0	+	0.68	(0.58,1]	chr16	646396	296	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.38295	3.8675450000000002	5.35214	0.0730701	0.0181452	0.199669	0.0921579
chr4	183158906	183159006	2167990	0	+	0.56	(0.523,0.58]	chr4	219488	589	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000508614.5:ENST00000448232.6:ENST00000513834.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	86	2	2.53372	3.86738	5.20104	0.0541346	0.00648051	0.151733	0.0503748
chr9	133853292	133853392	4428931	0	-	0.63	(0.58,1]	chr9	423304	186	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.9908	3.86713	4.74346	0.0409591	0.0121457	0.136191	0.0754623
chr6	12033347	12033446	2854350	0	+	0.424242	(0.419,0.45]	chr6	278955	126	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1:ENST00000484210.1	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	3.11129	3.8670099999999996	4.62273	0.103601	0.023073	0.197541	0.109758
chr10	75509086	75509186	4521249	0	+	0.55	(0.523,0.58]	chr10	432249	575	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	3	78	2	2.42547	3.86671	5.30795	0.0315825	0.0227679	0.120781	0.108532
chr18	74960981	74961081	7092893	0	+	0.59	(0.58,1]	chr18	722473	399	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.47204	3.86671	5.26138	0.0623526	0.021217	0.181127	0.0996078
chr10	79219473	79219573	4533556	0	+	0.65	(0.58,1]	chr10	432457	28	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	116	2	3.75733	3.8665599999999998	3.97579	0.00655968	0.0033279	0.0536645	0.0325742
chr19	56835420	56835517	7410674	0	-	0.474227	(0.45,0.485]	chr19	771664	13	INTRON	INTRON	ZIM2:PEG3	ENSG00000269699.7:ENSG00000198300.14	ENST00000593711.6:ENST00000689654.1:ENST00000629319.3:ENST00000599935.5:ENST00000595671.5:ENST00000597281.5:ENST00000601070.5:ENST00000693159.1:ENST00000650111.1:ENST00000648694.1:ENST00000326441.15:ENST00000649233.1:ENST00000649680.1:ENST00000649876.1:ENST00000649428.1:ENST00000650632.1:ENST00000650102.1:ENST00000649735.1:ENST00000647621.1:ENST00000598410.5:ENST00000593695.5:ENST00000599577.5:ENST00000594389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	930	2	2.95299	3.866405	4.77982	0.002116	4.18328e-4	0.0239744	0.0117681
chr1	119725663	119725761	224061	0	+	0.408163	(0.39,0.419]	chr1	24645	3	INTRON	INTRON	PHGDH	ENSG00000092621.13	ENST00000641597.1:ENST00000493622.5:ENST00000641213.1:ENST00000641947.1:ENST00000642041.1:ENST00000641074.1:ENST00000641115.1:ENST00000642021.1:ENST00000641491.1:ENST00000641023.2:ENST00000369409.9:ENST00000641573.1:ENST00000641513.1:ENST00000641375.1:ENST00000641891.1:ENST00000641570.1:ENST00000641587.1:ENST00000641371.1:ENST00000462324.2:ENST00000641272.1:ENST00000641247.1:ENST00000641756.1:ENST00000641711.1:ENST00000641927.1:ENST00000641314.1:ENST00000369407.3:ENST00000641811.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	75	2	3.03479	3.866385	4.69798	0.088901	0.0106145	0.183874	0.069619
chr5	148392320	148392419	2562852	0	+	0.323232	(0.29,0.33]	chr5	254487	24	INTRON	INTRON	FBXO38	ENSG00000145868.17	ENST00000296701.10:ENST00000503613.5:ENST00000340253.10:ENST00000394370.7:ENST00000508326.5:ENST00000509411.5:ENST00000511080.5:ENST00000504971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	48	2	3.0064	3.866375	4.72635	0.0672935	0.0251671	0.163263	0.114704
chr7	112205401	112205501	3692562	0	-	0.52	(0.485,0.523]	chr7	354969	2009	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	64	2	2.38071	3.8661900000000005	5.35167	0.0388914	0.0294163	0.142578	0.116079
chr11	57499452	57499552	5038766	0	-	0.7	(0.58,1]	chr11	488205	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000533515.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	3.03676	3.86593	4.6951	0.0521567	0.0198789	0.148503	0.100864
chr3	13197426	13197526	1691116	0	-	0.65	(0.58,1]	chr3	176566	329	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.03676	3.86593	4.6951	0.0521567	0.0198789	0.148503	0.100864
chr4	856097	856196	2178145	0	-	0.616162	(0.58,1]	chr4	220550	24	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5:ENST00000511980.5:ENST00000510799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	44	2	3.03676	3.86593	4.6951	0.0521567	0.0198789	0.148503	0.100864
chr7	231227	231326	3305967	0	+	0.69697	(0.58,1]	chr7	320161	219	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.03676	3.86593	4.6951	0.0521567	0.0198789	0.148503	0.100864
chr9	124496025	124496124	4402685	0	-	0.616162	(0.58,1]	chr9	419817	25	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.03676	3.86593	4.6951	0.0521567	0.0198789	0.148503	0.100864
chr1	2254660	2254760	4758	0	+	0.53	(0.523,0.58]	chr1	1052	62	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	170	2	3.66688	3.865815	4.06475	0.00822954	0.00171614	0.0608959	0.0207262
chr6	158024475	158024574	3059737	0	+	0.393939	(0.39,0.419]	chr6	297373	63	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.7362	3.86579	4.99538	0.0613573	0.0461646	0.158506	0.155334
chr6	144468640	144468740	3021720	0	+	0.33	(0.29,0.33]	chr6	295268	54	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.65466	3.86571	5.07676	0.0498776	0.0412683	0.161215	0.136301
chr7	127915890	127915990	3470882	0	+	0.29	[0,0.29]	chr7	335407	107	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.73208	3.86566	4.99924	0.0409813	0.0347661	0.147516	0.126529
chr11	67298376	67298473	4880175	0	+	0.484536	(0.45,0.485]	chr11	470038	6	EXON_MRNA	EXON_MRNA:INTRON	ANKRD13D	ENSG00000172932.16	ENST00000511455.7:ENST00000308440.11:ENST00000447274.7:ENST00000506531.5:ENST00000504186.5:ENST00000508417.5:ENST00000512231.5:ENST00000513750.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	69	2	2.89353	3.86554	4.83755	0.06646	0.0133199	0.162385	0.0799309
chr17	81139298	81139398	6982895	0	-	0.59	(0.58,1]	chr17	713268	44	INTRON	INTRON	AATK	ENSG00000181409.14	ENST00000326724.9:ENST00000374792.6:ENST00000572798.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.78186	3.86534	4.94882	0.0354433	0.0342923	0.13449	0.127188
chr6	151319691	151319791	3040878	0	+	0.64	(0.58,1]	chr6	296456	134	INTRON	INTRON	AKAP12	ENSG00000131016.17	ENST00000402676.7:ENST00000253332.5	protein_coding	protein_coding	protein_coding	protein_coding	2	115	2	3.79235	3.86504	3.93773	0.00708574	0.00302484	0.0558168	0.0305643
chr12	69499733	69499833	5260937	0	+	0.43	(0.419,0.45]	chr12	513023	77	INTRON	INTRON	FRS2	ENSG00000166225.9	ENST00000547219.5:ENST00000550316.5:ENST00000547414.5:ENST00000548154.5:ENST00000549921.6:ENST00000550389.5:ENST00000550937.5:ENST00000549092.5:ENST00000550169.5	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	2.54153	3.864785	5.18804	0.051668	0.0316792	0.148503	0.128518
chr6	3352659	3352759	3087016	0	-	0.43	(0.419,0.45]	chr6	299774	283	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000496753.1:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	69	2	2.54153	3.864785	5.18804	0.051668	0.0316792	0.148503	0.128518
chr7	47475407	47475507	3588562	0	-	0.68	(0.58,1]	chr7	346123	223	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	3	151	2	3.2595	3.864755	4.47001	0.0115864	4.15967e-4	0.0731017	0.00768537
chr6	158561830	158561930	3063913	0	+	0.48	(0.45,0.485]	chr6	297687	12	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	4	90	2	1.91732	3.86471	5.8121	0.0537192	0.0158765	0.167824	0.0859576
chr10	63436423	63436523	4699785	0	-	0.37	(0.36,0.39]	chr10	447741	556	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	2.9032	3.86446	4.82572	0.0751666	0.0337607	0.172839	0.133139
chr9	6612343	6612442	4275132	0	-	0.363636	(0.36,0.39]	chr9	408387	16	INTRON	INTRON	GLDC	ENSG00000178445.10	ENST00000321612.8:ENST00000639364.1:ENST00000639954.1:ENST00000640592.1:ENST00000639840.1:ENST00000639020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	50	2	2.9032	3.86446	4.82572	0.0751666	0.0337607	0.172839	0.133139
chr1	214006861	214006960	339547	0	+	0.424242	(0.419,0.45]	chr1	38103	12	INTRON	INTRON	PROX1	ENSG00000117707.16	ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2	protein_coding	protein_coding	protein_coding	protein_coding	2	147	2	3.08499	3.86442	4.64385	0.0509743	5.96394e-4	0.148503	0.00990739
chr6	3351162	3351261	3087001	0	-	0.464646	(0.45,0.485]	chr6	299774	268	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000496753.1:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	79	2	2.30281	3.86434	5.42587	0.0311884	0.0290571	0.127822	0.116079
chr5	150516303	150516402	2565174	0	+	0.484848	(0.45,0.485]	chr5	254953	77	INTRON	INTRON	NDST1	ENSG00000070614.15	ENST00000522491.1:ENST00000519157.1:ENST00000524161.1:ENST00000523767.5:ENST00000518299.1:ENST00000518346.1:ENST00000261797.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	2.65647	3.8643349999999996	5.0722	0.0837071	0.00988295	0.181508	0.0664239
chr12	3226746	3226846	5160044	0	+	0.23	[0,0.29]	chr12	501358	110	INTRON	INTRON	TSPAN9	ENSG00000011105.14	ENST00000537971.5:ENST00000444315.6:ENST00000011898.10:ENST00000649909.1:ENST00000640568.1:ENST00000407263.2:ENST00000431374.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	163	2	2.91875	3.864185	4.80962	0.0282338	0.00119448	0.122308	0.020937
chr5	150508226	150508326	2565093	0	+	0.62	(0.58,1]	chr5	254951	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NDST1	ENSG00000070614.15	ENST00000522491.1:ENST00000519157.1:ENST00000524161.1:ENST00000523767.5:ENST00000518299.1:ENST00000518346.1:ENST00000261797.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	166	2	3.74106	3.86368	3.9863	0.00429231	0.0017591	0.042386	0.0211077
chr21	33234451	33234550	7609113	0	+	0.383838	(0.36,0.39]	chr21	794612	35	INTRON	INTRON	IFNAR2	ENSG00000159110.21	ENST00000683941.1:ENST00000382264.7:ENST00000342136.9:ENST00000404220.7:ENST00000420068.1:ENST00000342101.7:ENST00000382238.6:ENST00000413881.5:ENST00000443073.5:ENST00000447980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	2.48379	3.86348	5.24317	0.0714535	0.0433841	0.198579	0.138813
chr17	81826090	81826186	6985925	0	-	0.604167	(0.58,1]	chr17	713906	17	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	MCRIP1	ENSG00000225663.8	ENST00000455127.7:ENST00000457257.5:ENST00000538396.5:ENST00000572645.5:ENST00000576730.5:ENST00000573478.5:ENST00000574190.5:ENST00000576431.5:ENST00000575061.2	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.7038	3.86347	5.02314	0.0648563	0.00638322	0.162218	0.0501889
chr22	32818297	32818397	7717792	0	+	0.56	(0.523,0.58]	chr22	807776	158	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	3	196	2	3.01186	3.86343	4.715	0.00944557	0.00239045	0.0650078	0.0308863
chr10	79230670	79230770	4533668	0	+	0.63	(0.58,1]	chr10	432457	140	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	3	92	2	2.2681	3.86341	5.45872	0.0503853	0.00211999	0.148216	0.0239744
chr5	857769	857868	2607932	0	-	0.585859	(0.58,1]	chr5	259417	68	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	2	61	2	2.89926	3.863395	4.82753	0.0427798	0.0102831	0.13762	0.0678667
chr16	81525786	81525886	6508551	0	+	0.44	(0.419,0.45]	chr16	645911	299	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	143	2	3.72389	3.86326	4.00263	0.0193862	0.00312051	0.0955413	0.0311915
chr17	15463665	15463765	6860071	0	-	0.54	(0.523,0.58]	chr17	695067	102	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	173	2	2.88927	3.863245	4.83722	0.0306051	2.14954e-4	0.119102	0.00476765
chr1	2241527	2241626	4626	0	+	0.515152	(0.485,0.523]	chr1	1048	85	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	3.07448	3.8632299999999997	4.65198	0.0783889	0.0214987	0.175203	0.10537
chr1	9309178	9309277	19746	0	+	0.515152	(0.485,0.523]	chr1	2205	142	INTRON	INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11:ENST00000450402.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.07448	3.8632299999999997	4.65198	0.0783889	0.0214987	0.175203	0.10537
chr11	115480596	115480696	5130896	0	-	0.5	(0.485,0.523]	chr11	498122	344	INTRON	INTRON	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000541434.5:ENST00000543249.1:ENST00000540951.1:ENST00000536781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	3.07448	3.8632299999999997	4.65198	0.0783889	0.0214987	0.175203	0.10537
chr14	37200870	37200969	5783091	0	+	0.434343	(0.419,0.45]	chr14	566826	22	INTRON	INTRON	MIPOL1	ENSG00000151338.20	ENST00000694961.1:ENST00000396294.6:ENST00000537471.6:ENST00000556615.5:ENST00000554114.2:ENST00000695502.1:ENST00000695405.1:ENST00000695503.1:ENST00000684589.1:ENST00000327441.11:ENST00000694962.1:ENST00000539062.6:ENST00000554930.5:ENST00000556451.5:ENST00000694963.1:ENST00000555870.5:ENST00000694964.1:ENST00000556753.5:ENST00000694965.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	2.58571	3.863105	5.1405	0.0613171	0.0550015	0.18013	0.153337
chr7	55025057	55025157	3371605	0	+	0.44	(0.419,0.45]	chr7	325285	53	INTRON	INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000459688.1:ENST00000463948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.58571	3.863105	5.1405	0.0613171	0.0550015	0.18013	0.153337
chr9	91419957	91420056	4334178	0	-	0.393939	(0.39,0.419]	chr9	414047	87	INTRON	INTRON	NFIL3	ENSG00000165030.4	ENST00000297689.4	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.09555	3.86296	4.63037	0.0963077	0.0231436	0.189169	0.109883
chr2	63026842	63026942	817195	0	+	0.4	(0.39,0.419]	chr2	92205	297	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000496857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	2.90127	3.8628299999999998	4.82439	0.0762206	0.0339406	0.174484	0.133629
chr17	54943387	54943486	6754829	0	+	0.343434	(0.33,0.36]	chr17	681543	5	INTRON	INTRON	TOM1L1	ENSG00000141198.16	ENST00000445275.6:ENST00000348161.8:ENST00000576932.5:ENST00000572158.5:ENST00000575882.6:ENST00000571319.5:ENST00000536554.5:ENST00000572905.1:ENST00000574653.1:ENST00000574318.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	2.83079	3.862735	4.89468	0.0629186	0.0376711	0.160778	0.140049
chr14	89334158	89334258	6027444	0	-	0.41	(0.39,0.419]	chr14	591456	5	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	50	2	2.67669	3.8624199999999997	5.04815	0.0572698	0.051368	0.165482	0.154343
chr8	120801374	120801474	4059917	0	-	0.26	[0,0.29]	chr8	386607	1071	INTRON	INTRON	SNTB1	ENSG00000172164.15	ENST00000395601.7:ENST00000517992.2:ENST00000648490.1:ENST00000519177.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	64	2	2.84178	3.86232	4.88286	0.041613	0.0134188	0.136301	0.080481
chr18	76402581	76402681	7179145	0	-	0.49	(0.485,0.523]	chr18	730080	219	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.60361	3.862265	5.12092	0.0541523	0.0414411	0.167824	0.136301
chr7	148881900	148882000	3731548	0	-	0.49	(0.485,0.523]	chr7	358476	107	INTRON	INTRON	EZH2	ENSG00000106462.12	ENST00000683292.1:ENST00000320356.7:ENST00000492143.5:ENST00000478654.5:ENST00000350995.6:ENST00000460911.5:ENST00000683744.1:ENST00000682317.1:ENST00000682263.1:ENST00000476773.5:ENST00000483967.5:ENST00000498186.5:ENST00000483012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	2.60361	3.862265	5.12092	0.0541523	0.0414411	0.167824	0.136301
chr16	87918461	87918560	6657550	0	-	0.616162	(0.58,1]	chr16	666059	132	INTRON	INTRON	CA5A	ENSG00000174990.8	ENST00000649158.1:ENST00000648177.1:ENST00000649794.3:ENST00000648022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	111	2	3.70825	3.86224	4.01623	0.0111705	0.00161478	0.0716525	0.0199131
chr2	235045429	235045528	1062429	0	+	0.606061	(0.58,1]	chr2	115634	18	INTRON	INTRON	SH3BP4	ENSG00000130147.16	ENST00000392011.7:ENST00000409212.5:ENST00000344528.8	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.83384	3.861955	4.89007	0.0529065	0.00872525	0.14912	0.0612699
chr11	378619	378718	4784086	0	+	0.555556	(0.523,0.58]	chr11	457781	9	INTRON	INTRON	B4GALNT4	ENSG00000182272.12	ENST00000329962.11	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.57767	3.8618449999999998	5.14602	0.090356	0.00734367	0.186369	0.0550721
chr9	14838752	14838852	4280102	0	-	0.39	(0.36,0.39]	chr9	408973	134	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	68	2	2.15686	3.8617	5.56654	0.0642245	0.0272676	0.184676	0.112327
chr8	120542698	120542797	4057320	0	-	0.40404	(0.39,0.419]	chr8	386565	3	INTRON	INTRON	SNTB1	ENSG00000172164.15	ENST00000395601.7:ENST00000517992.2:ENST00000648490.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	186	2	3.75165	3.86124	3.97083	0.0173118	0.00100573	0.0898477	0.0142602
chr7	47347353	47347453	3587264	0	-	0.49	(0.485,0.523]	chr7	346030	6	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.57989	3.861185	5.14248	0.0899526	0.00761903	0.185791	0.0561937
chr20	63898210	63898309	7509810	0	+	0.454545	(0.45,0.485]	chr20	783627	25	INTRON	INTRON	DNAJC5	ENSG00000101152.11	ENST00000360864.9:ENST00000470551.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	239	2	3.55843	3.861155	4.16388	0.010211	4.76229e-4	0.0684871	0.008444
chr17	15466459	15466559	6860099	0	-	0.27	[0,0.29]	chr17	695067	130	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	156	2	3.80763	3.8608000000000002	3.91397	0.009665	7.60874e-4	0.0661255	0.0117439
chr9	93541322	93541422	4183398	0	+	0.52	(0.485,0.523]	chr9	397655	86	INTRON	INTRON	FAM120A	ENSG00000048828.17	ENST00000277165.11:ENST00000427765.1	protein_coding	protein_coding	protein_coding	protein_coding	3	78	2	2.41295	3.86066	5.30837	0.0314138	0.0236576	0.12069	0.111208
chr9	134375622	134375721	4261181	0	+	0.747475	(0.58,1]	chr9	406321	11	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2:ENST00000356384.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	45	2	2.55596	3.860245	5.16453	0.0534085	0.0249802	0.167062	0.10758
chr1	55110446	55110546	491621	0	-	0.28	[0,0.29]	chr1	58680	2	SS3_PROX	SS3_PROX:INTRON	USP24	ENSG00000162402.14	ENST00000294383.7	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	2.00598	3.86021	5.71444	0.104328	0.00157654	0.19835	0.0195664
chr22	32804818	32804918	7717657	0	+	0.58	(0.523,0.58]	chr22	807776	23	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	2	90	2	2.69087	3.8600700000000003	5.02927	0.0422993	0.0095202	0.13762	0.0650078
chr8	38779680	38779780	3802352	0	+	0.46	(0.45,0.485]	chr8	365828	219	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	82	2	2.19935	3.85962	5.51989	0.091453	0.00357389	0.188427	0.0342681
chr1	8701156	8701256	394566	0	-	0.42	(0.419,0.45]	chr1	45065	444	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000468247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	193	2	3.08978	3.859165	4.62855	0.0272234	6.21482e-4	0.112284	0.0101764
chr20	38070525	38070617	7475368	0	+	0.467391	(0.45,0.485]	chr20	778415	4	UTR3	UTR3:EXON_MRNA:INTRON	RPRD1B	ENSG00000101413.12	ENST00000462548.6:ENST00000373433.9:ENST00000449186.2:ENST00000618318.1:ENST00000614670.1:ENST00000622494.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	67	2	2.76444	3.85912	4.9538	0.0569772	0.0178454	0.154343	0.0945384
chr3	149900785	149900883	1596192	0	+	0.479592	(0.45,0.485]	chr3	168750	49	INTRON	INTRON	RNF13	ENSG00000082996.20	ENST00000344229.7:ENST00000491086.5:ENST00000392894.8:ENST00000467977.5:ENST00000474348.5:ENST00000467996.1:ENST00000459632.5:ENST00000466795.5:ENST00000490631.5:ENST00000361785.10:ENST00000482083.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	131	2	3.67914	3.8590549999999997	4.03897	0.0174714	0.00230814	0.0903552	0.0255029
chr19	39178973	39179071	7259818	0	+	0.673469	(0.58,1]	chr19	744220	5	UTR3	UTR3:EXON_MRNA	PAK4	ENSG00000130669.17	ENST00000360442.8:ENST00000321944.8:ENST00000358301.7:ENST00000593690.5:ENST00000599386.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.09402	3.859025	4.62403	0.0578275	0.0174733	0.154343	0.0928044
chr2	152365207	152365307	925763	0	+	0.45	(0.419,0.45]	chr2	103058	291	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	5	107	2	2.02218	3.85879	5.6954	0.0402135	0.0254103	0.145001	0.108573
chr2	170998023	170998123	1312533	0	-	0.33	(0.29,0.33]	chr2	140539	2	SS3_PROX	SS3_PROX:INTRON	TLK1	ENSG00000198586.14	ENST00000431350.7:ENST00000360843.7:ENST00000359766.7:ENST00000521943.5:ENST00000434911.6:ENST00000409443.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	64	2	2.49267	3.858575	5.22448	0.0331252	0.0313211	0.127822	0.123313
chr6	143427177	143427276	3281716	0	-	0.353535	(0.33,0.36]	chr6	317242	45	UTR3	UTR3:EXON_MRNA	ADAT2	ENSG00000189007.16	ENST00000237283.9:ENST00000606514.5	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	3.22121	3.8584650000000003	4.49572	0.103264	0.0171454	0.197541	0.0923809
chr12	26529551	26529651	5398519	0	-	0.47	(0.45,0.485]	chr12	528527	339	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	2	132	2	3.75426	3.85812	3.96198	0.0153755	0.00281669	0.0849828	0.0291091
chr21	15039602	15039702	7640758	0	-	0.3	(0.29,0.33]	chr21	799117	248	INTRON	INTRON	NRIP1	ENSG00000180530.11	ENST00000400202.5:ENST00000318948.7:ENST00000400199.5:ENST00000638122.1:ENST00000637963.1:ENST00000637630.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	3.05751	3.8580950000000005	4.65868	0.0735584	0.0226356	0.17026	0.108193
chr11	120212776	120212872	4950887	0	+	0.5625	(0.523,0.58]	chr11	478299	9	INTRON	INTRON	OAF	ENSG00000184232.9	ENST00000328965.9:ENST00000531220.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	3.13506	3.8578200000000002	4.58058	0.0860403	0.0186841	0.181766	0.0976296
chr20	36574948	36575048	7471318	0	+	0.54	(0.523,0.58]	chr20	777919	1	SS5_PROX	SS5_PROX:INTRON	TGIF2	ENSG00000118707.11	ENST00000373874.6:ENST00000373872.9:ENST00000650844.1:ENST00000611732.4:ENST00000558028.5:ENST00000560025.1	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.81323	3.857725	4.90222	0.0650388	0.0125132	0.162385	0.0765738
chr15	28652186	28652285	6068880	0	+	0.555556	(0.523,0.58]	chr15	596168	2	INTRON	INTRON	HERC2P9	ENSG00000206149.11	ENST00000529624.5:ENST00000530420.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	1	47	2	2.80981	3.857405	4.905	0.0563605	0.0364868	0.154188	0.139793
chr5	177451279	177451378	2600318	0	+	0.575758	(0.523,0.58]	chr5	258321	25	INTRON	INTRON	PRR7	ENSG00000131188.12	ENST00000507881.5:ENST00000323249.8:ENST00000502922.5:ENST00000510492.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.80981	3.857405	4.905	0.0563605	0.0364868	0.154188	0.139793
chr9	133916961	133917061	4429570	0	-	0.55	(0.523,0.58]	chr9	423310	552	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.80981	3.857405	4.905	0.0563605	0.0364868	0.154188	0.139793
chr16	85435616	85435716	6517427	0	+	0.56	(0.523,0.58]	chr16	646391	763	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	2.9513	3.8571	4.7629	0.0531089	0.0167014	0.149478	0.0917029
chr5	1466548	1466648	2609389	0	-	0.56	(0.523,0.58]	chr5	259791	4	SS5_PROX	SS5_PROX:INTRON	LPCAT1	ENSG00000153395.10	ENST00000475622.5:ENST00000283415.4:ENST00000503252.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	62	2	2.9513	3.8571	4.7629	0.0531089	0.0167014	0.149478	0.0917029
chr14	39267722	39267822	5792178	0	+	0.46	(0.45,0.485]	chr14	567493	2	SS5_PROX	SS5_PROX:INTRON	MIA2	ENSG00000150527.18	ENST00000553728.1:ENST00000640607.2:ENST00000554392.5:ENST00000555716.5:ENST00000341749.7:ENST00000557038.5:ENST00000396165.8:ENST00000556990.1:ENST00000396158.6:ENST00000280083.7:ENST00000341502.9:ENST00000556148.5:ENST00000348007.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	101	2	2.03059	3.856945	5.6833	0.0359867	0.0195193	0.139735	0.0955413
chr12	132785195	132785292	5540306	0	-	0.536082	(0.523,0.58]	chr12	546788	5	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	2.54344	3.856565	5.16969	0.0599121	0.0387762	0.177269	0.131324
chr15	98787499	98787599	6194721	0	+	0.46	(0.45,0.485]	chr15	609667	26	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1:ENST00000557938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	48	2	2.81608	3.856465	4.89685	0.0614781	0.0375071	0.158506	0.139823
chr12	132534958	132535058	5352965	0	+	0.69	(0.58,1]	chr12	523670	66	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	3	150	2	3.24259	3.8563	4.47001	0.0119819	4.15967e-4	0.0743424	0.00768537
chrX	78122234	78122334	7912475	0	+	0.33	(0.29,0.33]	chrX	828893	37	INTRON	INTRON	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000491291.1:ENST00000373316.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	302	2	3.0951	3.8563	4.6175	0.00799937	0.00106276	0.0580954	0.0196024
chr9	123674143	123674242	4399328	0	-	0.616162	(0.58,1]	chr9	419698	24	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1:ENST00000474676.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	58	2	3.13234	3.8562950000000003	4.58025	0.0322188	0.0172566	0.121593	0.0923809
chr6	53862307	53862407	2928255	0	+	0.34	(0.33,0.36]	chr6	288346	197	INTRON	INTRON	LRRC1	ENSG00000137269.15	ENST00000487251.5:ENST00000370888.6:ENST00000370882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	2.93873	3.85614	4.77355	0.0735809	0.0305837	0.17026	0.126768
chr11	70574429	70574529	5060017	0	-	0.48	(0.45,0.485]	chr11	492663	711	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	239	2	3.61378	3.85611	4.09844	0.00923795	5.74935e-4	0.0644666	0.00963379
chr16	78635046	78635146	6500764	0	+	0.43	(0.419,0.45]	chr16	645695	603	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000684632.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6:ENST00000408984.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	72	2	2.83597	3.855975	4.87598	0.0768574	0.0171454	0.174882	0.0923809
chr2	42266850	42266950	774024	0	+	0.33	(0.29,0.33]	chr2	88963	15	INTRON	INTRON	EML4	ENSG00000143924.19	ENST00000318522.10:ENST00000402711.6:ENST00000401738.3	protein_coding	protein_coding	protein_coding	protein_coding	2	79	2	2.22665	3.85548	5.48431	0.0831598	0.00360762	0.180545	0.0342681
chr3	24417102	24417202	1715697	0	-	0.48	(0.45,0.485]	chr3	178004	681	INTRON	INTRON	THRB	ENSG00000151090.20	ENST00000646209.2:ENST00000396671.7:ENST00000356447.9:ENST00000646432.1:ENST00000643772.1:ENST00000645139.1:ENST00000642307.1:ENST00000644321.1:ENST00000646966.1:ENST00000416420.5:ENST00000413780.5:ENST00000447875.5:ENST00000453729.6:ENST00000431815.5:ENST00000447414.5:ENST00000428492.5:ENST00000418247.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.87326	3.855405	4.83755	0.06646	0.033576	0.162385	0.133139
chr1	39116906	39117005	93790	0	+	0.434343	(0.419,0.45]	chr1	11068	108	INTRON	INTRON	MACF1	ENSG00000127603.32	ENST00000361689.7:ENST00000689911.1:ENST00000567887.5:ENST00000372915.8:ENST00000472385.2:ENST00000693209.1:ENST00000524432.5:ENST00000467673.5:ENST00000688212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	51	2	3.02039	3.85536	4.69033	0.0958674	0.0276403	0.189038	0.120359
chr14	68975148	68975244	6000108	0	-	0.53125	(0.523,0.58]	chr14	588771	5	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000683261.1:ENST00000553370.5:ENST00000682602.1:ENST00000556571.1:ENST00000553659.1:ENST00000556203.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	2.92656	3.8552	4.78384	0.0663135	0.0289226	0.162385	0.124
chr18	76479504	76479604	7179918	0	-	0.57	(0.523,0.58]	chr18	730094	160	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7:ENST00000532857.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.92656	3.8552	4.78384	0.0663135	0.0289226	0.162385	0.124
chr2	73851478	73851571	833266	0	+	0.537634	(0.523,0.58]	chr2	94123	6	INTRON	INTRON	STAMBP	ENSG00000124356.17	ENST00000339566.7:ENST00000684095.1:ENST00000682847.1:ENST00000683317.1:ENST00000683036.1:ENST00000682157.1:ENST00000683349.1:ENST00000684337.1:ENST00000683247.1:ENST00000682683.1:ENST00000682329.1:ENST00000683149.1:ENST00000682851.1:ENST00000394070.7:ENST00000683728.1:ENST00000409707.6:ENST00000683518.1:ENST00000684585.1:ENST00000683434.1:ENST00000682352.1:ENST00000684697.1:ENST00000682592.1:ENST00000683718.1:ENST00000682423.1:ENST00000478946.2:ENST00000684200.1:ENST00000684355.1:ENST00000684774.1:ENST00000536064.2:ENST00000683465.1:ENST00000684716.1:ENST00000683016.1:ENST00000684174.1:ENST00000684703.1:ENST00000682799.1:ENST00000682998.1:ENST00000682379.1:ENST00000684312.1:ENST00000683852.1:ENST00000684321.1:ENST00000394073.6:ENST00000684671.1:ENST00000682848.1:ENST00000683877.1:ENST00000683530.1:ENST00000683027.1:ENST00000683304.1:ENST00000682784.1:ENST00000683205.1:ENST00000682351.1:ENST00000683818.1:ENST00000684426.1:ENST00000683582.1:ENST00000683417.1:ENST00000683594.1:ENST00000682387.1:ENST00000682747.1:ENST00000682105.1:ENST00000683928.1:ENST00000683391.1:ENST00000684758.1:ENST00000682558.1:ENST00000683902.1:ENST00000432295.7:ENST00000486458.2:ENST00000683314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	2.92656	3.8552	4.78384	0.0663135	0.0289226	0.162385	0.124
chr10	11963310	11963409	4630128	0	-	0.474747	(0.45,0.485]	chr10	442376	36	INTRON	INTRON	UPF2	ENSG00000151461.20	ENST00000357604.10:ENST00000356352.6:ENST00000397053.6	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.75654	3.85517	4.9538	0.0569772	0.0419966	0.154343	0.149115
chr2	216031788	216031888	1369602	0	-	0.41	(0.39,0.419]	chr2	145850	183	INTRON	INTRON	MREG:PECR	ENSG00000118242.16:ENSG00000115425.14	ENST00000439791.5:ENST00000424992.5:ENST00000420348.1:ENST00000442122.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	109	2	2.98689	3.854825	4.72276	0.0302096	0.0238104	0.118026	0.111436
chr20	36861064	36861163	7557112	0	-	0.565657	(0.523,0.58]	chr20	789159	13	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.74768	3.854825	4.96197	0.0521137	0.0411359	0.148503	0.147756
chr9	94996519	94996619	4189958	0	+	0.55	(0.523,0.58]	chr9	398123	167	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000297979.9:ENST00000424143.5:ENST00000462125.5:ENST00000479161.5:ENST00000451893.5:ENST00000460573.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.74768	3.854825	4.96197	0.0521137	0.0411359	0.148503	0.147756
chr2	127332790	127332889	1265099	0	-	0.434343	(0.419,0.45]	chr2	136349	19	INTRON	INTRON	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5:ENST00000344908.9	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.52086	3.85445	5.18804	0.0683849	0.051668	0.193274	0.148503
chr6	17693207	17693307	3105275	0	-	0.42	(0.419,0.45]	chr6	301042	42	INTRON	INTRON	NUP153	ENSG00000124789.12	ENST00000613258.4:ENST00000537253.5:ENST00000262077.3	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.52086	3.85445	5.18804	0.0683849	0.051668	0.193274	0.148503
chr7	138545181	138545281	3502860	0	+	0.44	(0.419,0.45]	chr7	337534	60	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.52086	3.85445	5.18804	0.0683849	0.051668	0.193274	0.148503
chr2	75552285	75552385	1194702	0	-	0.4	(0.39,0.419]	chr2	129875	257	INTRON	INTRON	EVA1A	ENSG00000115363.14	ENST00000485891.1:ENST00000490746.5:ENST00000233712.5:ENST00000393913.8:ENST00000410113.5:ENST00000410071.5:ENST00000432649.5:ENST00000486696.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	67	2	2.33678	3.85425	5.37172	0.0461697	0.0367885	0.155334	0.129052
chr10	46805815	46805914	4484741	0	+	0.474747	(0.45,0.485]	chr10	428921	35	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000688259.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	175	2	3.73584	3.85421	3.9725799999999998	0.015867	8.22344e-4	0.0859576	0.0124043
chr6	158017995	158018095	3059672	0	+	0.63	(0.58,1]	chr6	297372	2	SS5_PROX	SS5_PROX:INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	2	110	2	3.66231	3.853935	4.04556	0.0122106	0.00148416	0.0752279	0.0186585
chr6	143274617	143274717	3015577	0	+	0.41	(0.39,0.419]	chr6	294885	842	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000275235.8:ENST00000458219.1	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.60871	3.853885	5.09906	0.0535378	0.0269333	0.150319	0.119324
chr7	6703962	6704060	3542753	0	-	0.44898	(0.419,0.45]	chr7	342318	32	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.26209	3.85328	5.44447	0.0541225	0.0364384	0.167824	0.128173
chr19	48241943	48242039	7394906	0	-	0.572917	(0.523,0.58]	chr19	768716	5	INTRON	INTRON	CARD8	ENSG00000105483.18	ENST00000517510.5:ENST00000651546.1:ENST00000518622.5:ENST00000447740.6:ENST00000518979.5:ENST00000519940.6:ENST00000520753.5:ENST00000520153.5:ENST00000522773.5:ENST00000522051.5:ENST00000519646.5:ENST00000520015.5:ENST00000521613.5:ENST00000519302.6:ENST00000522068.5:ENST00000518596.5:ENST00000517778.5:ENST00000521092.5:ENST00000522889.5:ENST00000522431.5:ENST00000519332.5:ENST00000520007.5:ENST00000521437.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	2.7389	3.85302	4.96714	0.072318	0.0108948	0.168347	0.0706366
chr14	24280881	24280981	5759500	0	+	0.69	(0.58,1]	chr14	565532	19	INTRON	INTRON	ENSG00000288044	ENSG00000288044.2	ENST00000669726.2	lncRNA	lncRNA	lncRNA	lncRNA	1	52	2	2.56085	3.8529099999999996	5.14497	0.0803939	0.00474658	0.177452	0.0413976
chr17	1356134	1356233	6829082	0	-	0.515152	(0.485,0.523]	chr17	690311	14	INTRON	INTRON	YWHAE	ENSG00000108953.17	ENST00000264335.13:ENST00000466227.6:ENST00000571732.5:ENST00000573026.1:ENST00000496706.1:ENST00000573196.5:ENST00000575977.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	128	2	3.78195	3.852455	3.92296	0.0136284	0.00288574	0.0797406	0.0297057
chr6	16714184	16714284	3103987	0	-	0.52	(0.485,0.523]	chr6	300893	463	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6:ENST00000495178.1:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.85817	3.8521400000000003	4.84611	0.0608067	0.0334631	0.158506	0.133139
chr16	89294687	89294786	6659752	0	-	0.656566	(0.58,1]	chr16	666648	25	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	281	2	3.07484	3.852025	4.62921	0.00163826	0.0010623	0.0250898	0.0148315
chr10	45857292	45857392	4678142	0	-	0.57	(0.523,0.58]	chr10	446183	20	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000610690.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	3	76	2	2.1913299999999998	3.8519	5.51247	0.0378186	0.0230387	0.140551	0.102982
chr20	37503775	37503875	7559805	0	-	0.47	(0.45,0.485]	chr20	789575	40	EXON_LNCRNA	EXON_LNCRNA:INTRON	BLCAP	ENSG00000166619.15	ENST00000411780.1:ENST00000613961.1:ENST00000467603.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	48	2	2.69444	3.851515	5.00859	0.052901	0.0471378	0.156915	0.14912
chr6	10588313	10588413	2850430	0	+	0.39	(0.36,0.39]	chr6	278695	10	INTRON	INTRON	GCNT2	ENSG00000111846.20	ENST00000410107.5:ENST00000489225.5:ENST00000397423.7:ENST00000495262.7:ENST00000475577.5:ENST00000489819.5:ENST00000474518.1:ENST00000379597.7:ENST00000485764.1:ENST00000461400.1:ENST00000316170.9:ENST00000459872.1:ENST00000265012.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	51	2	3.14223	3.851495	4.56076	0.103289	0.0209989	0.197541	0.103249
chr11	115499974	115500074	5131090	0	-	0.37	(0.36,0.39]	chr11	498122	538	INTRON	INTRON	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000541434.5:ENST00000543249.1:ENST00000540951.1:ENST00000536781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	50	2	3.00362	3.85147	4.69932	0.0877431	0.027769	0.183437	0.12074
chr6	111451313	111451413	3236028	0	-	0.39	(0.36,0.39]	chr6	313684	345	INTRON	INTRON	REV3L	ENSG00000009413.16	ENST00000422377.5:ENST00000434009.5:ENST00000368802.8:ENST00000435970.5:ENST00000358835.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	3.00362	3.85147	4.69932	0.0877431	0.027769	0.183437	0.12074
chr7	65046545	65046645	3376807	0	+	0.51	(0.485,0.523]	chr7	325925	76	INTRON	INTRON	CCT6P3	ENSG00000234585.6	ENST00000419314.5:ENST00000426828.5	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	1	48	2	2.53228	3.8512	5.17012	0.0614918	0.038581	0.18013	0.131324
chr16	89302827	89302926	6659837	0	-	0.565657	(0.523,0.58]	chr16	666658	8	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	387	2	2.98548	3.85113	4.71678	0.0149366	3.57407e-5	0.0835955	0.00128259
chr22	48700249	48700349	7751270	0	+	0.64	(0.58,1]	chr22	812283	65	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	3.40767	3.8511049999999996	4.29454	0.0305531	0.0197265	0.126768	0.0958249
chr15	25016693	25016791	6064020	0	+	0.346939	(0.33,0.36]	chr15	595414	16	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	3	177	2	3.82032	3.851055	3.88179	0.0125838	0.00138371	0.0761905	0.0178815
chr20	21242355	21242454	7448939	0	+	0.464646	(0.45,0.485]	chr20	775009	92	INTRON	INTRON	KIZ	ENSG00000088970.16	ENST00000619574.4:ENST00000620891.4:ENST00000611685.4:ENST00000616848.4:ENST00000619189.5:ENST00000616679.4:ENST00000619179.4:ENST00000621366.1:ENST00000451772.5:ENST00000419359.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	2.08776	3.8510349999999995	5.61431	0.0696113	0.0217589	0.194713	0.100615
chr6	31734862	31734962	3119434	0	-	0.6	(0.58,1]	chr6	303332	2	INTRON	INTRON	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000616760.1:ENST00000375784.8	protein_coding	protein_coding	protein_coding	protein_coding	3	155	2	3.49194	3.8509650000000004	4.20999	0.0072369	9.16802e-4	0.0565323	0.0133866
chr12	26712256	26712354	5400381	0	-	0.459184	(0.45,0.485]	chr12	528698	6	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000540791.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	3.12941	3.850955	4.5725	0.0926859	0.0199365	0.188571	0.100864
chr3	171786767	171786867	1958324	0	-	0.29	[0,0.29]	chr3	199081	155	INTRON	INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9:ENST00000498278.5:ENST00000440204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	3.08401	3.85075	4.61749	0.061376	0.0199046	0.158506	0.100864
chr6	41058519	41058618	3130846	0	-	0.333333	(0.33,0.36]	chr6	305368	58	INTRON	INTRON	OARD1	ENSG00000124596.17	ENST00000482853.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	80	2	2.31852	3.8506799999999997	5.38284	0.0317908	0.0312852	0.127822	0.121384
chr6	34587684	34587783	3124182	0	-	0.454545	(0.45,0.485]	chr6	304700	5	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	4	241	2	3.72856	3.85057	3.9725799999999998	0.00748993	8.22344e-4	0.0576451	0.0124043
chr1	18878799	18878899	407852	0	-	0.56	(0.523,0.58]	chr1	47249	1	SS5_PROX	SS5_PROX:INTRON	ALDH4A1	ENSG00000159423.17	ENST00000375341.8:ENST00000290597.9:ENST00000538839.5:ENST00000538309.5	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.43762	3.85047	5.26332	0.0343548	0.0337698	0.134666	0.124319
chr16	87860404	87860503	6657078	0	-	0.494949	(0.485,0.523]	chr16	666007	82	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	2.63059	3.85029	5.06999	0.0445854	0.0230209	0.140478	0.109585
chr2	47889018	47889118	1143095	0	-	0.29	[0,0.29]	chr2	125006	4	INTRON	INTRON	FBXO11	ENSG00000138081.22	ENST00000684712.1:ENST00000682451.1:ENST00000403359.8:ENST00000683894.1:ENST00000681999.1:ENST00000682975.1:ENST00000684085.1:ENST00000492225.5:ENST00000424163.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	46	2	2.59271	3.8498200000000002	5.10693	0.0532832	0.0292928	0.167062	0.116079
chr9	61969076	61969169	4158016	0	+	0.494624	(0.485,0.523]	chr9	395241	1	INTRON	INTRON	FAM27C	ENSG00000231527.7	ENST00000653087.1:ENST00000660875.1:ENST00000670686.1:ENST00000443347.6:ENST00000668789.1:ENST00000657353.1:ENST00000669747.1:ENST00000662964.1:ENST00000650759.1:ENST00000656926.1:ENST00000655025.1:ENST00000655049.1:ENST00000659299.1:ENST00000651201.1:ENST00000651799.1	lncRNA	lncRNA	lncRNA	lncRNA	1	47	2	2.91537	3.8498149999999995	4.78426	0.0660335	0.0298565	0.162385	0.126732
chr16	67601041	67601141	6472463	0	+	0.56	(0.523,0.58]	chr16	642672	281	INTRON	INTRON	CTCF	ENSG00000102974.16	ENST00000646076.1:ENST00000644852.1:ENST00000264010.10:ENST00000401394.6:ENST00000646771.1:ENST00000642847.1:ENST00000644753.1:ENST00000642819.1:ENST00000645306.1:ENST00000643892.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.68276	3.849765	5.01677	0.0482765	0.0464998	0.156036	0.144601
chr1	248853237	248853336	709824	0	-	0.484848	(0.45,0.485]	chr1	83007	19	INTRON	INTRON	ZNF692	ENSG00000171163.16	ENST00000463519.5:ENST00000306601.9:ENST00000366471.7:ENST00000533927.5:ENST00000476503.5:ENST00000477070.6:ENST00000412341.6:ENST00000482023.5:ENST00000451251.5:ENST00000470787.6:ENST00000462037.6:ENST00000474351.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	2.49029	3.849675	5.20906	0.0676934	0.0399616	0.193219	0.133954
chr2	98471077	98471177	855622	0	+	0.46	(0.45,0.485]	chr2	96866	256	INTRON	INTRON	INPP4A	ENSG00000040933.16	ENST00000409016.8:ENST00000409851.8:ENST00000074304.9:ENST00000409463.5:ENST00000409540.7	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.49029	3.849675	5.20906	0.0676934	0.0399616	0.193219	0.133954
chr4	1878823	1878923	1996061	0	+	0.62	(0.58,1]	chr4	203459	69	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	70	2	2.1424	3.8496049999999995	5.55681	0.0374477	0.0126042	0.139793	0.0761905
chr20	44358746	44358845	7482495	0	+	0.50505	(0.485,0.523]	chr20	779618	25	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.7365	3.8494450000000002	4.96239	0.0518747	0.0423471	0.149195	0.148503
chr12	116198273	116198373	5513168	0	-	0.34	(0.33,0.36]	chr12	542781	171	INTRON	INTRON	MED13L	ENSG00000123066.9	ENST00000281928.9:ENST00000650226.1:ENST00000548743.2:ENST00000647567.1:ENST00000551197.2	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.98982	3.84938	4.70894	0.0798152	0.027642	0.176933	0.120359
chr16	2088892	2088984	6534918	0	-	0.597826	(0.58,1]	chr16	649463	3	UTR3	UTR3:EXON_MRNA	PKD1	ENSG00000008710.20	ENST00000262304.9:ENST00000423118.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.1491	3.849185	4.54927	0.0643046	0.0154006	0.161669	0.0869771
chr16	89489468	89489560	6661730	0	-	0.73913	(0.58,1]	chr16	666757	4	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	81	2	1.80292	3.849165	5.89541	0.059442300000000003	0.0066708	0.176598	0.0540577
chr3	60129936	60130036	1794906	0	-	0.41	(0.39,0.419]	chr3	186807	492	INTRON	INTRON	FHIT	ENSG00000189283.10	ENST00000492590.6:ENST00000476844.5:ENST00000468189.5:ENST00000488467.5	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.54977	3.849	5.14823	0.0640389	0.0501234	0.184676	0.147892
chr13	113528877	113528977	5658568	0	+	0.44	(0.419,0.45]	chr13	555716	78	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	2.7644	3.84865	4.9329	0.0716557	0.0447981	0.168159	0.154539
chr13	75391690	75391790	5727101	0	-	0.53	(0.523,0.58]	chr13	561722	145	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	3	171	2	3.58132	3.848515	4.11571	0.0193579	4.74832e-4	0.0954964	0.00842092
chr9	134346520	134346620	4260888	0	+	0.64	(0.58,1]	chr9	406311	195	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	55	2	2.95313	3.848295	4.74346	0.0435972	0.0121457	0.139245	0.0754623
chr18	76403180	76403280	7179151	0	-	0.52	(0.485,0.523]	chr18	730080	225	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	2	125	2	3.44992	3.84816	4.2464	0.0240794	0.00121376	0.106575	0.0162693
chr17	29773008	29773108	6879167	0	-	0.52	(0.485,0.523]	chr17	698253	117	INTRON	INTRON	SSH2	ENSG00000141298.19	ENST00000540801.6:ENST00000269033.7:ENST00000394848.5:ENST00000579040.5:ENST00000577483.1:ENST00000592397.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	125	2	3.51828	3.84811	4.17794	0.0214738	0.0014639	0.100517	0.0185482
chr20	44403783	44403881	7482953	0	+	0.571429	(0.523,0.58]	chr20	779645	5	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	133	2	2.9513	3.848065	4.74483	0.0531089	2.83162e-4	0.149478	0.00581439
chr13	113337754	113337854	5753308	0	-	0.63	(0.58,1]	chr13	564094	113	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.63525	3.847975	5.0607	0.0459151	0.029633	0.154743	0.116079
chr2	235590422	235590522	1063502	0	+	0.61	(0.58,1]	chr2	115656	655	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	2.63525	3.847975	5.0607	0.0459151	0.029633	0.154743	0.116079
chr22	50729571	50729660	7755487	0	+	0.629214	(0.58,1]	chr22	812808	1	UTR5	UTR5:EXON_MRNA:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2:ENST00000659388.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.63525	3.847975	5.0607	0.0459151	0.029633	0.154743	0.116079
chr16	89350390	89350489	6660322	0	-	0.383838	(0.36,0.39]	chr16	666695	67	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	141	2	3.08309	3.8478950000000003	4.6127	0.0485184	5.96463e-4	0.145074	0.00990739
chr16	50597698	50597798	6451904	0	+	0.57	(0.523,0.58]	chr16	639902	391	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	167	2	3.84363	3.84783	3.85203	0.0120823	0.00104505	0.0745767	0.0146403
chr9	134415269	134415368	4261586	0	+	0.676768	(0.58,1]	chr9	406352	58	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000481739.2:ENST00000356384.4:ENST00000672570.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	2.02776	3.8473699999999997	5.66698	0.0700362	0.0102927	0.195209	0.0684871
chr6	166955816	166955906	3302053	0	-	0.622222	(0.58,1]	chr6	319756	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000358165.7:ENST00000683158.1:ENST00000683333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	708	2	3.82654	3.847325	3.86811	0.00275362	7.41209e-4	0.0285628	0.0160724
chr15	24986302	24986401	6063708	0	+	0.323232	(0.29,0.33]	chr15	595387	40	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	4	201	2	3.36703	3.8470899999999997	4.32715	0.00465828	0.00223658	0.044542	0.024843
chr5	95888174	95888274	2731122	0	-	0.46	(0.45,0.485]	chr5	268199	32	UTR3	UTR3:EXON_MRNA	ELL2	ENSG00000118985.16	ENST00000237853.9	protein_coding	protein_coding	protein_coding	protein_coding	2	129	2	3.55856	3.847085	4.13561	0.0213798	0.0017907	0.100177	0.0213868
chr19	15321638	15321738	7342267	0	-	0.33	(0.29,0.33]	chr19	760397	413	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.84122	3.847035	4.85285	0.0567079	0.0350501	0.154343	0.137151
chr9	133855387	133855486	4428952	0	-	0.59596	(0.58,1]	chr9	423304	207	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.87471	3.846665	4.81862	0.0495478	0.0102696	0.146562	0.0678072
chr15	51901492	51901592	6108248	0	+	0.29	[0,0.29]	chr15	601341	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TMOD3	ENSG00000138594.14	ENST00000308580.12:ENST00000560549.5:ENST00000561438.5:ENST00000560725.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	47	2	2.43841	3.846575	5.25474	0.0701324	0.02298	0.195286	0.102982
chr16	81645781	81645881	6509757	0	+	0.38	(0.36,0.39]	chr16	645930	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8:ENST00000564666.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	62	2	2.70325	3.846335	4.98942	0.0824711	0.0141427	0.179396	0.0833845
chr19	1412960	1413059	7187476	0	+	0.646465	(0.58,1]	chr19	731286	25	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	58	2	2.43115	3.846265	5.26138	0.0309513	0.021217	0.127822	0.0996078
chr3	195151790	195151889	1981531	0	-	0.484848	(0.45,0.485]	chr3	201666	49	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000437101.5:ENST00000473200.1:ENST00000429994.5:ENST00000418940.5:ENST00000491138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	2.98123	3.846165	4.7111	0.0781398	0.0270875	0.175203	0.119337
chr17	57350222	57350322	6760707	0	+	0.42	(0.419,0.45]	chr17	682104	395	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	147	2	3.00229	3.845555	4.68882	0.0572793	5.28169e-4	0.154343	0.00907271
chr1	149505179	149505267	238595	0	+	0.465909	(0.45,0.485]	chr1	26612	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NBPF19	ENSG00000271383.8	ENST00000651566.2:ENST00000611931.4:ENST00000612881.4:ENST00000369227.7:ENST00000426482.3	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	2.80521	3.84544	4.88567	0.0681544	0.0146126	0.164505	0.0837727
chr2	239274982	239275082	1391458	0	-	0.54	(0.523,0.58]	chr2	148740	234	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	57	2	2.48975	3.845395	5.20104	0.101574	0.00648051	0.196431	0.0503748
chrY	19596470	19596570	8144203	0	+	0.25	[0,0.29]	chrY	848372	35	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TXLNGY	ENSG00000131002.13	ENST00000445715.6:ENST00000253320.8	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	2	63	2	2.80677	3.844815	4.88286	0.041613	0.0145741	0.136301	0.0837727
chr2	10346146	10346245	718860	0	+	0.616162	(0.58,1]	chr2	84026	156	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	59	2	3.19823	3.8446949999999998	4.49116	0.0287301	0.0207449	0.115888	0.102713
chr9	134354404	134354504	4260967	0	+	0.64	(0.58,1]	chr9	406311	274	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	59	2	3.19823	3.8446949999999998	4.49116	0.0287301	0.0207449	0.115888	0.102713
chr20	38135439	38135537	7560681	0	-	0.520408	(0.485,0.523]	chr20	789688	18	INTRON	INTRON	TGM2	ENSG00000198959.12	ENST00000361475.7	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.67159	3.84439	5.01719	0.0480495	0.0478226	0.1588	0.144601
chr6	159981588	159981688	3065390	0	+	0.51	(0.485,0.523]	chr6	297908	118	INTRON	INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.67159	3.84439	5.01719	0.0480495	0.0478226	0.1588	0.144601
chr4	26357901	26358000	2023390	0	+	0.313131	(0.29,0.33]	chr4	206768	128	INTRON	INTRON	RBPJ	ENSG00000168214.22	ENST00000512351.5:ENST00000681799.1:ENST00000681403.1:ENST00000342295.6:ENST00000512671.6:ENST00000506956.5:ENST00000345843.8:ENST00000361572.10:ENST00000514380.5:ENST00000514807.5:ENST00000348160.9:ENST00000681506.1:ENST00000509158.6:ENST00000691085.1:ENST00000692303.1:ENST00000681856.1:ENST00000513182.5:ENST00000681025.1:ENST00000681679.1:ENST00000680210.1:ENST00000355476.8:ENST00000680140.1:ENST00000511401.5:ENST00000680511.1:ENST00000510778.7:ENST00000679698.1:ENST00000679469.1:ENST00000681484.1:ENST00000505958.6:ENST00000507561.5:ENST00000514730.5:ENST00000507574.5:ENST00000514675.5:ENST00000515573.5:ENST00000689192.1:ENST00000680928.1:ENST00000681260.1:ENST00000681093.1:ENST00000504423.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	2.71956	3.8443500000000004	4.96914	0.0481918	0.0442313	0.153511	0.144601
chr22	42647836	42647932	7821310	0	-	0.447917	(0.419,0.45]	chr22	820391	9	INTRON	INTRON	CYB5R3	ENSG00000100243.22	ENST00000693367.1:ENST00000352397.10:ENST00000361740.9:ENST00000692152.1:ENST00000693363.1:ENST00000689795.1:ENST00000686523.1:ENST00000407332.6:ENST00000687183.1:ENST00000691295.1:ENST00000690835.1:ENST00000689195.1:ENST00000688244.1:ENST00000690993.1:ENST00000689239.1:ENST00000692344.1:ENST00000686129.1:ENST00000466276.2:ENST00000693716.1:ENST00000688004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	50	2	2.64776	3.844095	5.04043	0.0625897	0.0551054	0.169163	0.160305
chr8	140528546	140528646	4088531	0	-	0.43	(0.419,0.45]	chr8	388514	85	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.64776	3.844095	5.04043	0.0625897	0.0551054	0.169163	0.160305
chr2	186358552	186358652	1340892	0	-	0.37	(0.36,0.39]	chr2	142335	323	INTRON	INTRON	LINC01473	ENSG00000237877.7	ENST00000667056.1:ENST00000671599.1	lncRNA	lncRNA	lncRNA	lncRNA	2	67	2	2.53819	3.843885	5.14958	0.0493212	0.0310559	0.146207	0.127822
chr19	51359457	51359555	7399185	0	-	0.581633	(0.58,1]	chr19	769742	25	INTRON	INTRON	ETFB	ENSG00000105379.10	ENST00000309244.9:ENST00000596253.1:ENST00000593992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	58	2	2.37998	3.843725	5.30747	0.0345705	0.0196049	0.135397	0.0955413
chr5	148393017	148393117	2562859	0	+	0.41	(0.39,0.419]	chr5	254487	31	INTRON	INTRON	FBXO38	ENSG00000145868.17	ENST00000296701.10:ENST00000503613.5:ENST00000340253.10:ENST00000394370.7:ENST00000508326.5:ENST00000509411.5:ENST00000511080.5:ENST00000504971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	136	2	3.37579	3.8436399999999997	4.31149	0.031519899999999997	0.00134114	0.120781	0.0174212
chr6	128501141	128501241	3256982	0	-	0.37	(0.36,0.39]	chr6	315230	89	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000524534.5:ENST00000525459.1:ENST00000392449.4:ENST00000532751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	67	2	2.15686	3.843365	5.52987	0.0642245	0.0287883	0.184676	0.115991
chr7	47536788	47536887	3589182	0	-	0.626263	(0.58,1]	chr7	346144	73	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	2	110	2	3.73069	3.84321	3.95573	0.0106925	0.00191878	0.0701355	0.0223755
chr22	38730902	38731002	7725128	0	+	0.41	(0.39,0.419]	chr22	809289	3	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	GTPBP1	ENSG00000100226.16	ENST00000216044.10:ENST00000458073.5:ENST00000462332.1:ENST00000484971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	185	2	3.54079	3.8431249999999997	4.14546	0.00890442	0.00311183	0.063673	0.0311915
chr1	1257810	1257908	380558	0	-	0.591837	(0.58,1]	chr1	42886	1	INTRON	INTRON	UBE2J2	ENSG00000160087.21	ENST00000450390.6:ENST00000349431.11:ENST00000347370.6:ENST00000400929.6:ENST00000464036.5:ENST00000360466.6:ENST00000400930.8:ENST00000473215.5:ENST00000435198.5:ENST00000509720.5:ENST00000491779.5:ENST00000466752.5:ENST00000503294.5:ENST00000477894.5:ENST00000471154.1:ENST00000422076.5:ENST00000502382.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	2.47204	3.842905	5.21377	0.0623526	0.0230012	0.181127	0.102982
chr17	40350713	40350809	6734467	0	+	0.614583	(0.58,1]	chr17	677354	4	INTRON	INTRON	RARA	ENSG00000131759.18	ENST00000254066.10:ENST00000394089.6:ENST00000425707.7:ENST00000394086.7:ENST00000394081.7:ENST00000475125.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.47204	3.842905	5.21377	0.0623526	0.0230012	0.181127	0.102982
chr1	43558227	43558327	107021	0	+	0.6	(0.58,1]	chr1	13192	39	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	148	2	3.17288	3.84276	4.51264	0.0137455	3.64278e-4	0.0800798	0.00699922
chr20	32378244	32378344	7455888	0	+	0.54	(0.523,0.58]	chr20	776143	58	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	279	2	3.67015	3.8425650000000005	4.01498	0.00396157	8.94756e-4	0.0406639	0.0131643
chr10	35428820	35428920	4476598	0	+	0.56	(0.523,0.58]	chr10	428113	336	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.61478	3.842175	5.06957	0.052707	0.0448011	0.167062	0.140478
chr11	70536630	70536730	5059639	0	-	0.56	(0.523,0.58]	chr11	492663	333	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	2.61478	3.842175	5.06957	0.052707	0.0448011	0.167062	0.140478
chr5	1103206	1103306	2608883	0	-	0.55	(0.523,0.58]	chr5	259667	86	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.61478	3.842175	5.06957	0.052707	0.0448011	0.167062	0.140478
chr1	91776938	91777037	526723	0	-	0.454545	(0.45,0.485]	chr1	61906	56	INTRON	INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	66	2	2.73028	3.84204	4.9538	0.0569772	0.0192493	0.154343	0.0994526
chr20	49148589	49148689	7572602	0	-	0.47	(0.45,0.485]	chr20	791289	123	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	2.62266	3.8420199999999998	5.06138	0.0492008	0.0243222	0.146142	0.113231
chr2	10403479	10403578	719437	0	+	0.575758	(0.523,0.58]	chr2	84044	62	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4:ENST00000613496.4:ENST00000620771.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	68	2	3.2478	3.841885	4.43597	0.0335771	0.0313935	0.127822	0.124319
chr1	12598003	12598103	402584	0	-	0.54	(0.523,0.58]	chr1	46226	18	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	63	2	2.24954	3.841825	5.43411	0.0500176	0.026041	0.161481	0.109673
chr11	70765067	70765167	5061932	0	-	0.54	(0.523,0.58]	chr11	492701	472	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	128	2	3.83429	3.84115	3.84801	0.012469	0.00343547	0.0761905	0.0333396
chr1	8701356	8701456	394568	0	-	0.37	(0.36,0.39]	chr1	45065	446	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000468247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	251	2	3.6681	3.840885	4.01367	0.0095076	8.9097e-4	0.0657347	0.0131121
chr17	72553034	72553134	6963841	0	-	0.58	(0.523,0.58]	chr17	710389	186	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	5	290	2	3.18943	3.8407100000000005	4.49199	0.0183212	7.33005e-5	0.0923288	0.00217616
chr19	34389295	34389395	7243243	0	+	0.57	(0.523,0.58]	chr19	741718	73	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	61	2	2.918	3.84045	4.7629	0.0558053	0.0167014	0.154188	0.0917029
chr19	2441914	2442013	7309605	0	-	0.646465	(0.58,1]	chr19	753890	30	INTRON	INTRON	LMNB2	ENSG00000176619.13	ENST00000325327.4	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.6577	3.84042	5.02314	0.0695799	0.00638322	0.167028	0.0501889
chr7	47346656	47346756	3587257	0	-	0.64	(0.58,1]	chr7	346029	3	SS3_PROX	SS3_PROX:INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.6577	3.84042	5.02314	0.0695799	0.00638322	0.167028	0.0501889
chr6	140785933	140786033	3279590	0	-	0.37	(0.36,0.39]	chr6	317145	1221	INTRON	INTRON	ENSG00000234147	ENSG00000234147.3	ENST00000650553.2	lncRNA	lncRNA	lncRNA	lncRNA	1	49	2	2.79528	3.84014	4.885	0.0697729	0.0413701	0.167185	0.148333
chr16	24731995	24732095	6425592	0	+	0.38	(0.36,0.39]	chr16	635737	13	INTRON	INTRON	TNRC6A	ENSG00000090905.19	ENST00000566108.2:ENST00000395799.8:ENST00000315183.11:ENST00000562829.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.73813	3.840035	4.94194	0.064883	0.0459393	0.162218	0.154743
chr3	101587375	101587472	1523763	0	+	0.360825	(0.36,0.39]	chr3	162106	15	INTRON	INTRON	PCNP	ENSG00000081154.12	ENST00000265260.8:ENST00000498274.5:ENST00000460231.5:ENST00000469941.5:ENST00000486406.5:ENST00000470490.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	49	2	2.73813	3.840035	4.94194	0.064883	0.0459393	0.162218	0.154743
chr2	113591490	113591589	881008	0	+	0.636364	(0.58,1]	chr2	99685	24	INTRON	INTRON	WASH2P	ENSG00000146556.15	ENST00000686495.1:ENST00000692602.1:ENST00000688542.1:ENST00000685302.1:ENST00000685435.1:ENST00000685518.1:ENST00000691953.1:ENST00000453662.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	71	2	1.91069	3.8400149999999997	5.76934	0.0607034	0.00849371	0.179468	0.0617717
chr10	48044612	48044711	4680812	0	-	0.393939	(0.39,0.419]	chr10	446508	52	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	1	50	2	3.04938	3.839875	4.63037	0.0963077	0.0253994	0.189169	0.115502
chr5	616508	616607	2378435	0	+	0.40404	(0.39,0.419]	chr5	237586	37	INTRON	INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	3.04938	3.839875	4.63037	0.0963077	0.0253994	0.189169	0.115502
chr10	112195446	112195546	4760741	0	-	0.48	(0.45,0.485]	chr10	455255	118	INTRON	INTRON	GPAM	ENSG00000119927.14	ENST00000480130.5:ENST00000498541.1	protein_coding	processed_transcript	protein_coding	processed_transcript	5	105	2	2.29469	3.8398600000000003	5.38503	0.0308908	0.0199833	0.119556	0.100864
chr2	138420384	138420483	1277672	0	-	0.474747	(0.45,0.485]	chr2	137676	15	INTRON	INTRON	SPOPL-DT	ENSG00000228043.5	ENST00000431985.5	lncRNA	lncRNA	lncRNA	lncRNA	3	83	2	2.67085	3.83972	5.00859	0.052901	0.0137017	0.14912	0.0814223
chr2	240625668	240625768	1075200	0	+	0.62	(0.58,1]	chr2	116657	1	SS5_PROX	SS5_PROX:INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2:ENST00000407714.2	protein_coding	protein_coding	protein_coding	protein_coding	5	246	2	3.58815	3.83971	4.09127	0.00377613	3.30588e-4	0.0396337	0.00649747
chr9	34226235	34226334	4141202	0	+	0.515152	(0.485,0.523]	chr9	393829	49	INTRON	INTRON	UBAP1	ENSG00000165006.14	ENST00000625521.2:ENST00000379186.8:ENST00000297661.9:ENST00000626262.2:ENST00000359544.2	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	2.5366	3.83954	5.14248	0.0953348	0.00761903	0.189038	0.0561937
chr11	12813823	12813923	4803040	0	+	0.56	(0.523,0.58]	chr11	460563	490	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.77655	3.839385	4.90222	0.0685533	0.0125132	0.165066	0.0765738
chr6	3144669	3144768	2828585	0	+	0.494949	(0.485,0.523]	chr6	277604	38	INTRON	INTRON	BPHL	ENSG00000137274.13	ENST00000434640.5:ENST00000430655.6:ENST00000424847.6:ENST00000433912.5:ENST00000380379.10:ENST00000490918.5:ENST00000380375.4:ENST00000488487.2:ENST00000423798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	85	2	2.53609	3.8392850000000003	5.14248	0.0538271	0.00761903	0.151027	0.0561937
chr19	35005222	35005322	7244912	0	+	0.59	(0.58,1]	chr19	742073	20	INTRON	INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	57	2	3.09824	3.839245	4.58025	0.0341637	0.0172566	0.125129	0.0923809
chrX	52897402	52897499	7882794	0	+	0.659794	(0.58,1]	chrX	826612	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	FAM156B	ENSG00000179304.18	ENST00000610405.4:ENST00000619346.4:ENST00000610609.4:ENST00000612188.4:ENST00000616419.4:ENST00000416841.8:ENST00000593751.7	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.09824	3.839245	4.58025	0.0341637	0.0172566	0.125129	0.0923809
chr3	9467329	9467428	1402831	0	+	0.444444	(0.419,0.45]	chr3	150228	2	EXON_MRNA	EXON_MRNA:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000406341.5:ENST00000670063.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000466242.5:ENST00000682236.1:ENST00000421188.1:ENST00000687014.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	50	2	2.92337	3.8391349999999997	4.7549	0.0888907	0.0333415	0.183874	0.133139
chr7	94931907	94932007	3419028	0	+	0.45	(0.419,0.45]	chr7	330364	200	INTRON	INTRON	PPP1R9A	ENSG00000158528.12	ENST00000433360.6:ENST00000340694.8:ENST00000424654.5:ENST00000433881.5:ENST00000456331.6:ENST00000289495.7	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.92337	3.8391349999999997	4.7549	0.0888907	0.0333415	0.183874	0.133139
chr8	61677311	61677410	3986617	0	-	0.434343	(0.419,0.45]	chr8	381422	6	INTRON	INTRON	ASPH	ENSG00000198363.18	ENST00000379454.9:ENST00000541428.5:ENST00000522349.5:ENST00000523927.5:ENST00000445642.6:ENST00000356457.9:ENST00000519234.5:ENST00000518068.5:ENST00000517903.5:ENST00000517847.6:ENST00000522835.5:ENST00000518306.5:ENST00000517856.5:ENST00000517928.1:ENST00000389204.8:ENST00000522603.5:ENST00000379449.10:ENST00000517661.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	2.92337	3.8391349999999997	4.7549	0.0888907	0.0333415	0.183874	0.133139
chr10	74267809	74267909	4512852	0	+	0.42	(0.419,0.45]	chr10	431931	244	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	76	2	3.05517	3.8389499999999996	4.62273	0.103601	0.010527	0.197541	0.0691044
chr11	95888661	95888761	5109521	0	-	0.38	(0.36,0.39]	chr11	496499	4	SS3_PROX	SS3_PROX:INTRON	MTMR2	ENSG00000087053.20	ENST00000675896.1:ENST00000346299.10:ENST00000675495.1:ENST00000676272.1:ENST00000675910.1:ENST00000393223.8:ENST00000676177.1:ENST00000675022.1:ENST00000675362.1:ENST00000674974.1:ENST00000675320.1:ENST00000675174.1:ENST00000674950.1:ENST00000674989.1:ENST00000675030.1:ENST00000676388.1:ENST00000675848.1:ENST00000675652.1:ENST00000676146.1:ENST00000675922.1:ENST00000676268.1:ENST00000675024.1:ENST00000675767.1:ENST00000676432.1:ENST00000676027.1:ENST00000675196.1:ENST00000675957.1:ENST00000675981.1:ENST00000674924.1:ENST00000676166.1:ENST00000676440.1:ENST00000675454.1:ENST00000674968.1:ENST00000676378.1:ENST00000675288.1:ENST00000675636.1:ENST00000675237.1:ENST00000674528.1:ENST00000675477.1:ENST00000674901.1:ENST00000675034.1:ENST00000676393.1:ENST00000675413.1:ENST00000675933.1:ENST00000675660.1:ENST00000674610.1:ENST00000409459.5:ENST00000352297.11:ENST00000675807.1:ENST00000675489.1:ENST00000676261.1:ENST00000481642.6:ENST00000495134.6:ENST00000484818.6:ENST00000470293.6:ENST00000497683.6:ENST00000444541.7:ENST00000470011.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	61	2	2.62895	3.83894	5.04893	0.0909522	0.0125348	0.187477	0.0765738
chr11	121479641	121479741	4953929	0	+	0.6	(0.58,1]	chr11	478664	10	INTRON	INTRON	SORL1	ENSG00000137642.13	ENST00000260197.12:ENST00000532451.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	95	2	2.42056	3.838935	5.25731	0.0386125	0.00358178	0.131324	0.0342681
chr11	14499502	14499602	5000095	0	-	0.69	(0.58,1]	chr11	483895	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	COPB1	ENSG00000129083.13	ENST00000249923.7:ENST00000439561.7:ENST00000534234.5:ENST00000529866.5:ENST00000534771.1:ENST00000533096.5:ENST00000533533.5:ENST00000529210.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.91493	3.838885	4.76284	0.0471737	0.0259506	0.143232	0.116361
chr12	132542624	132542723	5353042	0	+	0.646465	(0.58,1]	chr12	523670	143	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.91493	3.838885	4.76284	0.0471737	0.0259506	0.143232	0.116361
chr11	20100336	20100436	4820033	0	+	0.41	(0.39,0.419]	chr11	461595	22	INTRON	INTRON	NAV2	ENSG00000166833.23	ENST00000360655.8:ENST00000396085.6:ENST00000349880.9:ENST00000396087.7:ENST00000533917.5	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.48186	3.838825	5.19579	0.0717596	0.0469937	0.199212	0.143232
chr14	104777812	104777907	6057667	0	-	0.684211	(0.58,1]	chr14	594698	12	EXON_MRNA	EXON_MRNA:INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000557552.1:ENST00000683722.1:ENST00000555528.5:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000554848.5:ENST00000682269.1:ENST00000555380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	43	2	2.84993	3.83873	4.82753	0.0427798	0.0297842	0.13762	0.126591
chr16	978453	978552	6531823	0	-	0.59596	(0.58,1]	chr16	648726	76	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000545827.6:ENST00000570014.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.84993	3.83873	4.82753	0.0427798	0.0297842	0.13762	0.126591
chr11	68364343	68364443	4882602	0	+	0.37	(0.36,0.39]	chr11	470559	4	SS5_PROX	SS5_PROX:INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	137	2	3.74183	3.838615	3.9354	0.0173883	0.00347533	0.0901374	0.0336331
chr11	70581129	70581229	5060084	0	-	0.45	(0.419,0.45]	chr11	492663	778	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	50	2	2.58571	3.83852	5.09133	0.0613171	0.0586308	0.18013	0.155565
chr6	44261125	44261225	3137777	0	-	0.43	(0.419,0.45]	chr6	306525	1	SS5_PROX	SS5_PROX:INTRON	NFKBIE	ENSG00000146232.17	ENST00000275015.9:ENST00000619360.6:ENST00000477930.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	50	2	2.58571	3.83852	5.09133	0.0613171	0.0586308	0.18013	0.155565
chr12	107738982	107739082	5491899	0	-	0.41	(0.39,0.419]	chr12	540131	2	SS5_PROX	SS5_PROX:INTRON	PRDM4	ENSG00000110851.12	ENST00000228437.10:ENST00000550376.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	2.7362	3.8384	4.9406	0.0658437	0.0461646	0.162385	0.155334
chr5	66180944	66181043	2439381	0	+	0.363636	(0.36,0.39]	chr5	242966	22	UTR3	UTR3:EXON_MRNA	SREK1	ENSG00000153914.16	ENST00000334121.11	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.85025	3.8379849999999998	4.82572	0.0751666	0.0373341	0.172839	0.139793
chr17	30602028	30602128	6712522	0	+	0.39	(0.36,0.39]	chr17	674118	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000214719:SMURF2P1	ENSG00000214719.13:ENSG00000248121.8	ENST00000398849.6:ENST00000579301.5:ENST00000514992.2:ENST00000651170.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:processed_transcript:transcribed_unprocessed_pseudogene	1	71	2	3.19032	3.837955	4.48559	0.0414113	0.036329	0.139793	0.136301
chr10	122115130	122115230	4599651	0	+	0.48	(0.45,0.485]	chr10	439774	15	INTRON	INTRON	TACC2	ENSG00000138162.19	ENST00000369005.6:ENST00000513429.5:ENST00000515603.5:ENST00000515273.5:ENST00000334433.7:ENST00000358010.5:ENST00000453444.6:ENST00000493951.5:ENST00000369001.5:ENST00000492237.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	3.03233	3.837895	4.64346	0.0850039	0.0244076	0.181766	0.113311
chr11	64142869	64142969	5049006	0	-	0.46	(0.45,0.485]	chr11	490257	161	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	48	2	3.03233	3.837895	4.64346	0.0850039	0.0244076	0.181766	0.113311
chr9	69053760	69053859	4163993	0	+	0.454545	(0.45,0.485]	chr9	395733	1	INTRON	INTRON	FXN	ENSG00000165060.15	ENST00000644653.1:ENST00000484259.3:ENST00000396366.6:ENST00000377270.8:ENST00000498653.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	3.03233	3.837895	4.64346	0.0850039	0.0244076	0.181766	0.113311
chr11	70656832	70656931	5060843	0	-	0.383838	(0.36,0.39]	chr11	492672	20	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	85	2	2.26695	3.8376200000000003	5.40829	0.0873322	0.00581205	0.183248	0.0472624
chr8	22374230	22374330	3770090	0	+	0.57	(0.523,0.58]	chr8	362721	61	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	6	311	2	3.72089	3.83757	3.95425	0.00445624	5.07674e-4	0.0434502	0.00883359
chr6	47269476	47269576	3144101	0	-	0.37	(0.36,0.39]	chr6	306750	156	INTRON	INTRON	TNFRSF21	ENSG00000146072.6	ENST00000296861.2	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	3.11385	3.8373049999999997	4.56076	0.103289	0.00881066	0.197541	0.0616009
chr2	63027241	63027341	817199	0	+	0.38	(0.36,0.39]	chr2	92205	301	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000496857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	67	2	2.10753	3.837035	5.56654	0.0700776	0.0272676	0.195259	0.112327
chr16	81645881	81645981	6509758	0	+	0.43	(0.419,0.45]	chr16	645931	1	SS5_PROX	SS5_PROX:INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8:ENST00000564666.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	64	2	2.75532	3.8369050000000002	4.91849	0.0800906	0.0174488	0.177372	0.0928044
chr20	48929705	48929805	7490232	0	+	0.48	(0.45,0.485]	chr20	780774	73	INTRON	INTRON	ARFGEF2	ENSG00000124198.10	ENST00000371917.5:ENST00000681399.1:ENST00000679436.1:ENST00000681885.1:ENST00000681021.1:ENST00000680871.1:ENST00000681656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	77	2	2.09504	3.83679	5.57854	0.0477581	0.0230065	0.1588	0.102982
chr17	38742419	38742518	6895599	0	-	0.585859	(0.58,1]	chr17	700401	16	INTRON	INTRON	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000611883.4:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.97713	3.836115	4.6951	0.0521567	0.0226795	0.148503	0.108193
chr17	57441337	57441435	6761624	0	+	0.602041	(0.58,1]	chr17	682133	2	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.97713	3.836115	4.6951	0.0521567	0.0226795	0.148503	0.108193
chr11	423893	423993	4968181	0	-	0.53	(0.523,0.58]	chr11	480428	23	INTRON	INTRON	ANO9	ENSG00000185101.13	ENST00000526142.5:ENST00000534161.5:ENST00000332826.7:ENST00000532094.5:ENST00000528927.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	78	2	2.09339	3.8360950000000003	5.5788	0.102833	0.00262418	0.197541	0.0278348
chr3	65577888	65577988	1811245	0	-	0.41	(0.39,0.419]	chr3	187259	285	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	49	2	2.67669	3.836035	4.99538	0.0613573	0.051368	0.165482	0.158506
chr1	155974908	155975006	599930	0	-	0.693878	(0.58,1]	chr1	70603	27	INTRON	INTRON	ARHGEF2	ENSG00000116584.22	ENST00000313695.11:ENST00000361247.9:ENST00000477754.2:ENST00000673475.1:ENST00000462460.6:ENST00000313667.8:ENST00000471589.5:ENST00000476273.1:ENST00000497907.5:ENST00000465079.1:ENST00000495070.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	43	2	2.78186	3.835655	4.88945	0.0388928	0.0342923	0.13449	0.131324
chr7	139704842	139704942	3723194	0	-	0.57	(0.523,0.58]	chr7	357498	728	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	6	317	2	3.48028	3.8354999999999997	4.19072	0.00280773	0.00103282	0.033661	0.0145105
chr17	2690128	2690221	6836521	0	-	0.591398	(0.58,1]	chr17	691418	9	UTR3	UTR3:EXON_MRNA	CLUH	ENSG00000132361.18	ENST00000570628.6:ENST00000574426.7:ENST00000435359.5:ENST00000651024.2:ENST00000575014.5	protein_coding	protein_coding	protein_coding	protein_coding	6	97	2	1.93489	3.835455	5.73602	0.0325288	0.00904546	0.130831	0.0637469
chr4	10103695	10103795	2195687	0	-	0.59	(0.58,1]	chr4	222413	4	SS5_PROX	SS5_PROX:INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	99	2	1.80484	3.835185	5.86553	0.0899021	6.8352e-4	0.185791	0.0108717
chr13	113059892	113059992	5656236	0	+	0.45	(0.419,0.45]	chr13	555189	51	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	2.88408	3.834915	4.78575	0.0674152	0.0224633	0.163486	0.108193
chr13	113059393	113059493	5656231	0	+	0.4	(0.39,0.419]	chr13	555189	46	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	2.62127	3.834815	5.04836	0.0923527	0.0126072	0.188571	0.0768036
chr10	79242068	79242168	4533782	0	+	0.61	(0.58,1]	chr10	432457	254	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.55596	3.834755	5.11355	0.0534085	0.0271806	0.167062	0.112113
chr10	79293062	79293162	4534299	0	+	0.61	(0.58,1]	chr10	432487	3	SS3_PROX	SS3_PROX:INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10:ENST00000478357.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.55596	3.834755	5.11355	0.0534085	0.0271806	0.167062	0.112113
chr7	210673	210773	3305761	0	+	0.63	(0.58,1]	chr7	320161	13	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.55596	3.834755	5.11355	0.0534085	0.0271806	0.167062	0.112113
chr1	111440941	111441037	561103	0	-	0.364583	(0.36,0.39]	chr1	64377	12	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	ENSG00000243960:WDR77	ENSG00000243960.1:ENSG00000116455.14	ENST00000445680.1:ENST00000416099.1:ENST00000235090.10	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	5	261	2	3.76108	3.83461	3.90814	0.013177	6.52025e-4	0.0785398	0.0105344
chrX	72579608	72579708	8064253	0	-	0.39	(0.36,0.39]	chrX	841451	9	UTR3	UTR3:EXON_MRNA	PHKA1	ENSG00000067177.15	ENST00000373545.7:ENST00000373542.9:ENST00000339490.7:ENST00000541944.5	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	2.381	3.83439	5.28778	0.0423665	0.0407706	0.149195	0.135868
chr22	24102111	24102211	7695383	0	+	0.58	(0.523,0.58]	chr22	805521	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CABIN1:ENSG00000232545	ENSG00000099991.18:ENSG00000232545.1	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1:ENST00000444093.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	7	297	2	3.6184	3.833925	4.04945	0.00846308	4.15625e-4	0.0617717	0.00768537
chr19	2337935	2337950	7189505	0	+	0.6	(0.58,1]	chr19	731793	1	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000593243.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	58	2	2.27185	3.8336550000000003	5.39546	0.0433824	0.0168207	0.152119	0.0884836
chr21	43752317	43752417	7624140	0	+	0.7	(0.58,1]	chr21	796774	4	SS3_PROX	SS3_PROX:INTRON	PDXK	ENSG00000160209.19	ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000498040.5:ENST00000481512.5:ENST00000490666.5:ENST00000467908.1:ENST00000343528.10:ENST00000398078.7:ENST00000468392.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	71	2	2.25618	3.8335600000000003	5.41094	0.0701734	0.00240622	0.168023	0.0261006
chr16	89986933	89987029	6526963	0	+	0.479167	(0.45,0.485]	chr16	647920	10	INTRON	INTRON	AFG3L1P	ENSG00000223959.9	ENST00000429663.6:ENST00000418696.5:ENST00000690928.1:ENST00000436447.5:ENST00000457926.5:ENST00000688932.1:ENST00000685584.1:ENST00000437774.5:ENST00000557444.5:ENST00000388970.7:ENST00000458301.5	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	2	65	2	2.08776	3.83315	5.57854	0.0696113	0.0230065	0.194713	0.102982
chr22	46951010	46951110	7746905	0	+	0.53	(0.523,0.58]	chr22	812232	372	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	3.08569	3.8331350000000004	4.58058	0.0860403	0.020773	0.181766	0.102713
chrX	47221466	47221564	7877818	0	+	0.55102	(0.523,0.58]	chrX	825683	20	INTRON	INTRON	CDK16	ENSG00000102225.17	ENST00000517997.5:ENST00000517479.1:ENST00000457458.6:ENST00000522883.1:ENST00000520295.5:ENST00000357227.9:ENST00000519758.5:ENST00000520893.5:ENST00000517426.5:ENST00000522234.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	3.08569	3.8331350000000004	4.58058	0.0860403	0.020773	0.181766	0.102713
chr12	3226946	3227046	5160046	0	+	0.49	(0.485,0.523]	chr12	501358	112	INTRON	INTRON	TSPAN9	ENSG00000011105.14	ENST00000537971.5:ENST00000444315.6:ENST00000011898.10:ENST00000649909.1:ENST00000640568.1:ENST00000407263.2:ENST00000431374.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	70	2	3.32827	3.832995	4.33772	0.03818	0.0294165	0.140822	0.116079
chr6	128516828	128516928	3257139	0	-	0.31	(0.29,0.33]	chr6	315230	246	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000524534.5:ENST00000525459.1:ENST00000392449.4:ENST00000532751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	76	2	2.2649	3.832705	5.40051	0.033106	0.0252356	0.13305	0.108065
chr19	34389795	34389895	7243248	0	+	0.44	(0.419,0.45]	chr19	741718	78	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	73	2	3.18837	3.832605	4.47684	0.0439311	0.0389508	0.142578	0.139875
chr10	131916690	131916790	4616183	0	+	0.56	(0.523,0.58]	chr10	441069	37	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.54344	3.83197	5.1205	0.0599121	0.0416463	0.177269	0.136301
chr10	42593506	42593606	4674951	0	-	0.4	(0.39,0.419]	chr10	445874	9	CDS	CDS:EXON_MRNA:INTRON	ZNF33B	ENSG00000196693.15	ENST00000462075.1:ENST00000486187.5:ENST00000465206.5:ENST00000613419.4:ENST00000359467.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	234	2	3.60514	3.83188	4.05862	0.0219642	4.2015e-4	0.101375	0.00773187
chr2	62893464	62893564	815845	0	+	0.26	[0,0.29]	chr2	92141	118	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.66408	3.8316600000000003	4.99924	0.0466601	0.0347661	0.156477	0.126529
chr7	101854150	101854250	3434350	0	+	0.44	(0.419,0.45]	chr7	332510	348	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	50	2	2.9727	3.8315150000000004	4.69033	0.0958674	0.0303302	0.189038	0.126768
chr3	30655754	30655854	1433585	0	+	0.52	(0.485,0.523]	chr3	153018	49	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4:ENST00000672866.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	110	2	2.11233	3.831435	5.55054	0.0252337	0.0215787	0.114923	0.100612
chr1	211814670	211814770	655231	0	-	0.39	(0.36,0.39]	chr1	77269	211	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	3	184	2	2.91337	3.83125	4.74913	0.0336196	4.0985e-4	0.124319	0.00761171
chr20	35658829	35658929	7554093	0	-	0.25	[0,0.29]	chr20	788670	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CPNE1:RBM12	ENSG00000214078.13:ENSG00000244462.8	ENST00000352393.8:ENST00000397443.7:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000435747.2:ENST00000374114.8:ENST00000359646.1:ENST00000374104.7:ENST00000424458.5:ENST00000431148.1:ENST00000435161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	158	2	3.31012	3.8310700000000004	4.3520200000000004	0.00413444	0.00320321	0.0376022	0.0361697
chr11	70815266	70815365	5062436	0	-	0.606061	(0.58,1]	chr11	492713	77	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.7038	3.83097	4.95814	0.0648563	0.0074469	0.162218	0.0553519
chr10	75708958	75709058	4523253	0	+	0.42	(0.419,0.45]	chr10	432271	610	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	160	2	1.64356	3.83095	6.01834	0.0572168	0.015582500000000001	0.174114	0.0849828
chr18	69404905	69405005	7083216	0	+	0.41	(0.39,0.419]	chr18	722102	32	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	2.41984	3.8308299999999997	5.24182	0.0441194	0.0393507	0.143358	0.140174
chr6	31736161	31736261	3119447	0	-	0.54	(0.523,0.58]	chr6	303334	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000616760.1:ENST00000375784.8	protein_coding	protein_coding	protein_coding	protein_coding	4	228	2	3.66046	3.8307650000000004	4.00107	0.00779316	6.64412e-4	0.0590217	0.0106995
chr16	1734784	1734884	6371286	0	+	0.61	(0.58,1]	chr16	628848	4	PRIMIRNA	PRIMIRNA:INTRON	MAPK8IP3:MIR3177	ENSG00000138834.15:ENSG00000265820.1	ENST00000685674.1:ENST00000250894.8:ENST00000673691.1:ENST00000356010.9:ENST00000610761.2:ENST00000564098.5:ENST00000561765.1:ENST00000578255.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:processed_transcript:primary_miRNA	3	71	2	1.85952	3.83071	5.8019	0.0671431	0.007984	0.192171	0.0596361
chr6	41723924	41724023	3132633	0	-	0.585859	(0.58,1]	chr6	305485	3	INTRON	INTRON	TFEB	ENSG00000112561.19	ENST00000358871.6:ENST00000373033.6:ENST00000230323.8:ENST00000677531.1:ENST00000403298.9:ENST00000420312.6:ENST00000424495.2:ENST00000678831.1:ENST00000419396.6:ENST00000678871.1:ENST00000394283.5:ENST00000679237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	69	2	2.1424	3.830265	5.51813	0.0374477	0.013519	0.139793	0.0792526
chr12	48938555	48938652	5423622	0	-	0.536082	(0.523,0.58]	chr12	531642	30	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARF3	ENSG00000134287.10	ENST00000256682.9:ENST00000485410.5:ENST00000447318.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	2.64274	3.829755	5.01677	0.0482765	0.0221922	0.144601	0.108193
chr7	583023	583122	3523916	0	-	0.737374	(0.58,1]	chr7	340376	33	INTRON	INTRON	PRKAR1B	ENSG00000188191.15	ENST00000544935.5:ENST00000537384.6:ENST00000406797.5:ENST00000403562.5:ENST00000360274.8:ENST00000400758.6:ENST00000430040.5	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.40217	3.82974	5.25731	0.100879	0.00358178	0.196131	0.0342681
chr2	152379001	152379101	925901	0	+	0.36	(0.33,0.36]	chr2	103058	429	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	3	79	2	2.31852	3.82967	5.34082	0.0338211	0.0312852	0.127822	0.124319
chr13	75480669	75480769	5727991	0	-	0.53	(0.523,0.58]	chr13	561722	1035	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	7	344	2	3.7049	3.829575	3.95425	0.00445624	3.9695e-4	0.0434502	0.00741985
chr20	38422714	38422808	7561049	0	-	0.382979	(0.36,0.39]	chr20	789758	6	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000667188.1:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000671309.1:ENST00000669405.1:ENST00000666806.1:ENST00000657665.1:ENST00000667282.1:ENST00000655311.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000659102.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000663955.1:ENST00000664964.1:ENST00000658324.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000662572.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	66	2	2.46174	3.8294349999999997	5.19713	0.0462258	0.0361885	0.143138	0.139793
chr12	1459446	1459546	5154991	0	+	0.38	(0.36,0.39]	chr12	500925	143	INTRON	INTRON	ERC1	ENSG00000082805.21	ENST00000543086.7:ENST00000360905.9:ENST00000542302.6:ENST00000546231.6:ENST00000347735.10:ENST00000397203.7:ENST00000440394.7:ENST00000545948.5:ENST00000589028.6:ENST00000355446.9:ENST00000588412.5:ENST00000691140.1:ENST00000543151.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	50	2	3.09749	3.8291250000000003	4.56076	0.103289	0.023009	0.197541	0.109581
chr16	85228365	85228465	6515352	0	+	0.64	(0.58,1]	chr16	646377	6	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	60	2	3.26123	3.828715	4.3962	0.0257049	0.0250928	0.114418	0.109543
chr19	54230840	54230940	7291902	0	+	0.36	(0.33,0.36]	chr19	750607	233	INTRON	INTRON	RPS9	ENSG00000170889.14	ENST00000448962.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	49	2	3.08687	3.8286100000000003	4.57035	0.0945416	0.0227116	0.188571	0.108285
chr6	144400624	144400724	3021017	0	+	0.35	(0.33,0.36]	chr6	295148	560	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1:ENST00000628146.2:ENST00000421035.2	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	3.08687	3.8286100000000003	4.57035	0.0945416	0.0227116	0.188571	0.108285
chr17	14330455	14330554	6683084	0	+	0.545455	(0.523,0.58]	chr17	670741	251	INTRON	INTRON	HS3ST3B1	ENSG00000125430.9	ENST00000360954.3:ENST00000466596.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	174	2	3.39923	3.828445	4.2576599999999996	0.0126065	0.00114788	0.0761905	0.0156784
chr18	69404805	69404905	7083215	0	+	0.41	(0.39,0.419]	chr18	722102	31	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10	protein_coding	protein_coding	protein_coding	protein_coding	2	135	2	3.30636	3.8282300000000005	4.3501	0.0350604	0.00121191	0.12704	0.0162672
chr17	38729095	38729195	6729374	0	+	0.52	(0.485,0.523]	chr17	676371	36	UTR3	UTR3:EXON_MRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5	protein_coding	protein_coding	protein_coding	protein_coding	4	204	2	2.67513	3.8282299999999996	4.98133	0.0315316	1.44235e-4	0.120781	0.00358393
chr18	32768644	32768744	7143400	0	-	0.34	(0.33,0.36]	chr18	726510	262	INTRON	INTRON	KLHL14	ENSG00000197705.10	ENST00000359358.9:ENST00000358095.4	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	2.64926	3.82784	5.00642	0.0542065	0.0238991	0.151733	0.111785
chr10	103705002	103705102	4757150	0	-	0.55	(0.523,0.58]	chr10	454791	115	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.80981	3.82775	4.84569	0.0610722	0.0364868	0.158506	0.139793
chr12	132124600	132124693	5352321	0	+	0.526882	(0.523,0.58]	chr12	523556	12	INTRON	INTRON	EP400P1	ENSG00000185684.16	ENST00000488030.5:ENST00000332441.7:ENST00000641289.3:ENST00000475841.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	46	2	2.80981	3.82775	4.84569	0.0610722	0.0364868	0.158506	0.139793
chr21	45454721	45454821	7630810	0	+	0.58	(0.523,0.58]	chr21	797656	489	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.80981	3.82775	4.84569	0.0610722	0.0364868	0.158506	0.139793
chr2	3293305	3293405	1081040	0	-	0.62	(0.58,1]	chr2	117633	106	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	2.50987	3.82742	5.14497	0.0865901	0.00474658	0.182221	0.0413976
chr22	50727800	50727898	7755469	0	+	0.591837	(0.58,1]	chr22	812807	33	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	2.50987	3.82742	5.14497	0.0865901	0.00474658	0.182221	0.0413976
chr7	223644	223743	3305891	0	+	0.707071	(0.58,1]	chr7	320161	143	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.50987	3.82742	5.14497	0.0865901	0.00474658	0.182221	0.0413976
chr9	133855885	133855985	4428957	0	-	0.47	(0.45,0.485]	chr9	423304	212	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.81608	3.826815	4.83755	0.06646	0.0375071	0.162385	0.139823
chr6	166953230	166953328	3302025	0	-	0.5	(0.485,0.523]	chr6	319750	8	EXON_MRNA	EXON_MRNA:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000499370.6:ENST00000358165.7:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	132	2	3.52623	3.8266999999999998	4.12717	0.0545434	0.00995814	0.167824	0.0673506
chr11	120213255	120213351	4950892	0	+	0.5625	(0.523,0.58]	chr11	478299	14	INTRON	INTRON	OAF	ENSG00000184232.9	ENST00000328965.9:ENST00000531220.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.86937	3.826605	4.78384	0.0663135	0.0324455	0.162385	0.130548
chr19	1412861	1412960	7187475	0	+	0.575758	(0.523,0.58]	chr19	731286	24	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.86937	3.826605	4.78384	0.0663135	0.0324455	0.162385	0.130548
chr13	98245903	98246003	5634690	0	+	0.52	(0.485,0.523]	chr13	553480	7	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.53228	3.8266	5.12092	0.0614918	0.0414411	0.18013	0.136301
chr17	39385282	39385381	6897730	0	-	0.494949	(0.485,0.523]	chr17	700664	417	INTRON	INTRON	FBXL20	ENSG00000108306.13	ENST00000264658.11:ENST00000583610.5:ENST00000394294.7:ENST00000577399.5:ENST00000647139.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.53228	3.8266	5.12092	0.0614918	0.0414411	0.18013	0.136301
chr2	75519990	75520088	1194377	0	-	0.387755	(0.36,0.39]	chr2	129863	14	INTRON	INTRON	EVA1A	ENSG00000115363.14	ENST00000485891.1:ENST00000490746.5:ENST00000233712.5:ENST00000393913.8:ENST00000410113.5:ENST00000410071.5:ENST00000432649.5:ENST00000486696.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	91	2	1.98191	3.826595	5.67128	0.0499358	0.023302	0.161385	0.103669
chr1	236560137	236560237	694581	0	-	0.58	(0.523,0.58]	chr1	81763	3	SS3_PROX	SS3_PROX:INTRON	HEATR1	ENSG00000119285.11	ENST00000366582.8:ENST00000366581.6	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.74768	3.82634	4.905	0.0563605	0.0411359	0.154188	0.147756
chr11	16967780	16967880	5011246	0	-	0.55	(0.523,0.58]	chr11	484333	544	INTRON	INTRON	PLEKHA7	ENSG00000166689.17	ENST00000531066.6:ENST00000355661.7:ENST00000532079.1:ENST00000529213.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.74768	3.82634	4.905	0.0563605	0.0411359	0.154188	0.147756
chr11	70817564	70817664	5062459	0	-	0.57	(0.523,0.58]	chr11	492713	100	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.74768	3.82634	4.905	0.0563605	0.0411359	0.154188	0.147756
chr20	23635367	23635467	7537537	0	-	0.56	(0.523,0.58]	chr20	786644	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CST3	ENSG00000101439.9	ENST00000398411.5:ENST00000398409.1:ENST00000376925.8	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.74768	3.82634	4.905	0.0563605	0.0411359	0.154188	0.147756
chr7	210773	210872	3305762	0	+	0.575758	(0.523,0.58]	chr7	320161	14	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.74768	3.82634	4.905	0.0563605	0.0411359	0.154188	0.147756
chr7	47465418	47465517	3588462	0	-	0.555556	(0.523,0.58]	chr7	346123	123	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.74768	3.82634	4.905	0.0563605	0.0411359	0.154188	0.147756
chr10	133348091	133348191	4783415	0	-	0.65	(0.58,1]	chr10	457516	19	INTRON	INTRON	ENSG00000226699	ENSG00000226699.1	ENST00000452591.1	lncRNA	lncRNA	lncRNA	lncRNA	1	53	2	2.83384	3.82623	4.81862	0.0529065	0.0102696	0.14912	0.0678072
chr20	32475637	32475736	7543624	0	-	0.606061	(0.58,1]	chr20	787372	5	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	58	2	2.21459	3.826055	5.43752	0.0487458	0.0156166	0.160725	0.0849828
chr1	8683889	8683989	394393	0	-	0.48	(0.45,0.485]	chr1	45065	271	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000468247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	48	2	2.49029	3.82589	5.16149	0.0676934	0.0427653	0.193219	0.13762
chr6	1667274	1667374	3079542	0	-	0.41	(0.39,0.419]	chr6	299460	412	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	72	2	2.95348	3.82573	4.69798	0.088901	0.0127764	0.183874	0.0773423
chr10	103837416	103837516	4758479	0	-	0.56	(0.523,0.58]	chr10	454819	357	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.29891	3.825075	5.35124	0.0454288	0.0295772	0.154539	0.116079
chr1	8684887	8684987	394403	0	-	0.54	(0.523,0.58]	chr1	45065	281	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000468247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	57	2	2.6197	3.824485	5.02927	0.0853454	0.0095202	0.181766	0.0650078
chr10	103703405	103703505	4757134	0	-	0.58	(0.523,0.58]	chr10	454791	99	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	57	2	2.6197	3.824485	5.02927	0.0853454	0.0095202	0.181766	0.0650078
chr2	87528315	87528415	847933	0	+	0.47	(0.45,0.485]	chr2	95749	69	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000642451.1:ENST00000644478.1:ENST00000409139.6:ENST00000644125.1:ENST00000643743.1:ENST00000643276.1:ENST00000409898.2:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000646636.1:ENST00000629257.1:ENST00000409054.2	lncRNA	lncRNA	lncRNA	lncRNA	1	47	2	2.87326	3.824485	4.77571	0.0719884	0.033576	0.168159	0.133139
chr2	88625409	88625505	1215853	0	-	0.416667	(0.39,0.419]	chr2	131043	6	INTRON	INTRON	EIF2AK3	ENSG00000172071.15	ENST00000303236.9:ENST00000652099.1:ENST00000682892.1:ENST00000652423.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	2.54977	3.824415	5.09906	0.0640389	0.0535378	0.184676	0.150319
chr20	8474342	8474442	7430011	0	+	0.4	(0.39,0.419]	chr20	773698	1023	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	2.54977	3.824415	5.09906	0.0640389	0.0535378	0.184676	0.150319
chr7	105920107	105920204	3443961	0	+	0.402062	(0.39,0.419]	chr7	333436	1	INTRON	INTRON	CDHR3	ENSG00000128536.16	ENST00000470188.5:ENST00000488386.5:ENST00000472116.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	49	2	2.54977	3.824415	5.09906	0.0640389	0.0535378	0.184676	0.150319
chr1	94462892	94462991	187298	0	+	0.323232	(0.29,0.33]	chr1	20299	39	INTRON	INTRON	ABCD3	ENSG00000117528.14	ENST00000370214.9:ENST00000647998.2:ENST00000315713.5:ENST00000468860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	123	2	3.31177	3.8242350000000003	4.3367000000000004	0.0289861	9.82971e-4	0.116079	0.0140583
chr6	157312384	157312484	3298415	0	-	0.55	(0.523,0.58]	chr6	319197	190	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	5	95	2	1.73753	3.8237500000000004	5.90997	0.0633793	0.012016	0.183824	0.0743424
chr17	82001444	82001544	6815311	0	+	0.61	(0.58,1]	chr17	688640	42	INTRON	INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	79	2	2.16828	3.823335	5.47839	0.0266596	0.0145198	0.118302	0.0823104
chr4	128859037	128859135	2132078	0	+	0.489796	(0.485,0.523]	chr4	216567	12	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000512960.5:ENST00000610919.4:ENST00000413543.6:ENST00000611140.4	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	2.74097	3.823195	4.90542	0.0561086	0.0180255	0.154188	0.0952934
chr19	47228244	47228331	7392363	0	-	0.793103	(0.58,1]	chr19	768101	2	CDS	CDS:EXON_MRNA:INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.56085	3.8230950000000004	5.08534	0.0803939	0.00549379	0.177452	0.0454065
chr1	3471791	3471891	5829	0	+	0.64	(0.58,1]	chr1	1234	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5:ENST00000464620.1:ENST00000418137.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	70	2	2.18715	3.8229349999999998	5.45872	0.0781652	0.00211999	0.175203	0.0239744
chr11	65086226	65086320	4869640	0	+	0.531915	(0.523,0.58]	chr11	467665	10	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ZFPL1	ENSG00000162300.13	ENST00000650243.1:ENST00000294258.8:ENST00000531761.5:ENST00000453524.6:ENST00000526334.5:ENST00000526440.1:ENST00000526945.5:ENST00000532200.1:ENST00000530488.1:ENST00000530744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	2.92656	3.82289	4.71922	0.0721601	0.0289226	0.168159	0.124
chr14	95414338	95414437	6048920	0	-	0.535354	(0.523,0.58]	chr14	593438	72	UTR3	UTR3:EXON_MRNA	SYNE3	ENSG00000176438.13	ENST00000682763.1:ENST00000557275.5	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.92656	3.82289	4.71922	0.0721601	0.0289226	0.168159	0.124
chr2	9425556	9425653	715119	0	+	0.525773	(0.523,0.58]	chr2	83532	2	INTRON	INTRON	CPSF3	ENSG00000119203.14	ENST00000475482.5:ENST00000238112.8:ENST00000460593.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.92656	3.82289	4.71922	0.0721601	0.0289226	0.168159	0.124
chr9	4855335	4855435	4109754	0	+	0.57	(0.523,0.58]	chr9	391370	54	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000442869.5:ENST00000381730.5:ENST00000381728.5:ENST00000448872.6	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.92656	3.82289	4.71922	0.0721601	0.0289226	0.168159	0.124
chr6	128493548	128493647	3256906	0	-	0.474747	(0.45,0.485]	chr6	315230	13	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000524534.5:ENST00000525459.1:ENST00000392449.4:ENST00000532751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	218	2	2.98408	3.8227149999999996	4.66135	0.00639315	0.00296361	0.05026	0.0346628
chr17	82006839	82006939	6815365	0	+	0.7	(0.58,1]	chr17	688641	26	EXON_MRNA	EXON_MRNA:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5:ENST00000578236.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	196	2	3.39623	3.822515	4.2488	0.0037252	9.03898e-4	0.0392361	0.0132686
chr1	16630437	16630533	406297	0	-	0.645833	(0.58,1]	chr1	46865	9	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CROCCP2	ENSG00000215908.10	ENST00000639594.1:ENST00000639456.1:ENST00000412962.4:ENST00000635081.1:ENST00000362058.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	57	2	2.43115	3.8224600000000004	5.21377	0.0309513	0.0230012	0.127822	0.102982
chr17	82150061	82150161	6987874	0	-	0.63	(0.58,1]	chr17	714577	143	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000419322.6:ENST00000392346.6:ENST00000582040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	57	2	2.43115	3.8224600000000004	5.21377	0.0309513	0.0230012	0.127822	0.102982
chr2	239291269	239291369	1391621	0	-	0.67	(0.58,1]	chr2	148740	397	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	57	2	2.43115	3.8224600000000004	5.21377	0.0309513	0.0230012	0.127822	0.102982
chr11	70746880	70746980	5061750	0	-	0.68	(0.58,1]	chr11	492701	290	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.38295	3.822165	5.26138	0.0730701	0.021217	0.199669	0.0996078
chr11	70760770	70760870	5061889	0	-	0.59	(0.58,1]	chr11	492701	429	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.38295	3.822165	5.26138	0.0730701	0.021217	0.199669	0.0996078
chr19	1835848	1835947	7307279	0	-	0.666667	(0.58,1]	chr19	753393	46	INTRON	INTRON	REXO1	ENSG00000079313.15	ENST00000170168.9:ENST00000587524.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.38295	3.822165	5.26138	0.0730701	0.021217	0.199669	0.0996078
chr15	98814271	98814371	6194989	0	+	0.45	(0.419,0.45]	chr15	609667	294	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1:ENST00000557938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	67	2	2.1235	3.822115	5.52073	0.0693342	0.0327198	0.194077	0.122543
chr14	23522200	23522299	5757176	0	+	0.676768	(0.58,1]	chr14	564963	74	INTRON	INTRON	ZFHX2-AS1	ENSG00000157306.14	ENST00000556354.5:ENST00000553985.1:ENST00000554403.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	43	2	3.09402	3.821645	4.54927	0.0643046	0.0174733	0.161669	0.0928044
chr11	96167606	96167706	5111812	0	-	0.43	(0.419,0.45]	chr11	496566	737	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	2	105	2	2.85745	3.8216	4.78575	0.0390201	0.0224633	0.131575	0.108193
chr13	50275745	50275845	5595357	0	+	0.32	(0.29,0.33]	chr13	551552	3	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000485007.5:ENST00000475913.5:ENST00000484529.5:ENST00000473075.3:ENST00000483444.5	lncRNA	lncRNA	lncRNA	lncRNA	1	47	2	2.51537	3.821535	5.1277	0.0639396	0.0382902	0.184676	0.131324
chr10	63263850	63263950	4698055	0	-	0.47	(0.45,0.485]	chr10	447720	435	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	130	2	3.79041	3.8214550000000003	3.8525	0.014451	0.00372052	0.0823104	0.0350519
chr9	124258957	124259054	4235504	0	+	0.536082	(0.523,0.58]	chr9	402076	2	INTRON	INTRON	NEK6	ENSG00000119408.17	ENST00000373603.5:ENST00000540326.5:ENST00000320246.10:ENST00000373600.7:ENST00000545174.5:ENST00000444973.5:ENST00000454453.5	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.24954	3.8214050000000004	5.39327	0.0500176	0.0277354	0.161481	0.112851
chr20	35280301	35280385	7552400	0	-	0.488095	(0.485,0.523]	chr20	788474	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF6	ENSG00000242372.9	ENST00000675032.1:ENST00000447927.6:ENST00000374443.7:ENST00000374436.7:ENST00000440766.5:ENST00000374450.8:ENST00000415116.1:ENST00000462894.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	2.85817	3.8212149999999996	4.78426	0.0660335	0.0334631	0.162385	0.133139
chr13	113046687	113046771	5656101	0	+	0.654762	(0.58,1]	chr13	555178	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000480321.1:ENST00000397021.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	72	2	2.38507	3.82119	5.25731	0.057029	0.00358178	0.154343	0.0342681
chr17	38725997	38726097	6729343	0	+	0.56	(0.523,0.58]	chr17	676371	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	MLLT6	ENSG00000275023.5	ENST00000621332.5:ENST00000619356.1:ENST00000615741.1:ENST00000615441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	325	2	3.40774	3.82109	4.23444	0.00852972	1.64268e-4	0.0620184	0.00393611
chr2	38325307	38325407	1123813	0	-	0.42	(0.419,0.45]	chr2	123019	59	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000474535.2:ENST00000472097.1:ENST00000451483.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	137	2	3.43953	3.82073	4.20193	0.0302191	0.00189707	0.118034	0.0222086
chr10	103838714	103838814	4758492	0	-	0.53	(0.523,0.58]	chr10	454819	370	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.7389	3.82056	4.90222	0.072318	0.0125132	0.168347	0.0765738
chr17	46947074	46947173	6746954	0	+	0.565657	(0.523,0.58]	chr17	679541	52	INTRON	INTRON	GOSR2	ENSG00000108433.17	ENST00000640792.1:ENST00000640358.1:ENST00000573224.2:ENST00000639985.1:ENST00000639199.1:ENST00000639365.1:ENST00000638579.1:ENST00000638189.1:ENST00000639066.1:ENST00000638219.1:ENST00000639388.1:ENST00000572403.5:ENST00000640723.1:ENST00000638468.1:ENST00000639713.1:ENST00000640866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	58	2	2.7389	3.82056	4.90222	0.072318	0.0125132	0.168347	0.0765738
chr1	2393431	2393531	5341	0	+	0.62	(0.58,1]	chr1	1087	2	SS5_PROX	SS5_PROX:INTRON	RER1	ENSG00000157916.20	ENST00000378513.7:ENST00000378518.5:ENST00000605895.6:ENST00000306256.13:ENST00000493207.1:ENST00000378512.5:ENST00000443438.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	2.63525	3.82055	5.00585	0.0459151	0.0323732	0.154743	0.121593
chr10	131918986	131919086	4616206	0	+	0.6	(0.58,1]	chr10	441069	60	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.63525	3.82055	5.00585	0.0459151	0.0323732	0.154743	0.121593
chr5	883644	883742	2608213	0	-	0.561224	(0.523,0.58]	chr5	259478	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000466684.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	3.13506	3.820495	4.50593	0.094303	0.0186841	0.188571	0.0976296
chr1	213068805	213068905	337226	0	+	0.43	(0.419,0.45]	chr1	37980	169	INTRON	INTRON	RPS6KC1	ENSG00000136643.12	ENST00000615329.4:ENST00000543354.5:ENST00000614059.4:ENST00000543470.5:ENST00000366960.8:ENST00000366959.4	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	2.72124	3.819865	4.91849	0.0837482	0.0174488	0.181508	0.0928044
chr4	140731659	140731758	2329944	0	-	0.434343	(0.419,0.45]	chr4	234026	297	INTRON	INTRON	TBC1D9	ENSG00000109436.8	ENST00000442267.3	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	2.72124	3.819865	4.91849	0.0837482	0.0174488	0.181508	0.0928044
chrX	52898179	52898277	7882802	0	+	0.489796	(0.485,0.523]	chrX	826612	10	UTR5	UTR5:EXON_MRNA:INTRON	FAM156B	ENSG00000179304.18	ENST00000610405.4:ENST00000619346.4:ENST00000610609.4:ENST00000612188.4:ENST00000616419.4:ENST00000416841.8:ENST00000593751.7	protein_coding	protein_coding	protein_coding	protein_coding	1	72	2	3.40249	3.8193849999999996	4.23628	0.045492200000000003	0.0260491	0.154539	0.109673
chr12	26529051	26529151	5398514	0	-	0.4	(0.39,0.419]	chr12	528527	334	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	3	79	2	2.14774	3.8193099999999998	5.49088	0.0455536	0.0309972	0.154731	0.119758
chr2	84990940	84991040	842730	0	+	0.47	(0.45,0.485]	chr2	94831	183	INTRON	INTRON	KCMF1	ENSG00000176407.18	ENST00000456682.1:ENST00000409785.9:ENST00000428691.5:ENST00000453448.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.62955	3.81907	5.00859	0.0530416	0.052901	0.167062	0.14912
chr17	81999045	81999145	6815287	0	+	0.53	(0.523,0.58]	chr17	688640	18	INTRON	INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	109	2	2.12526	3.818865	5.51247	0.02422	0.0230387	0.113028	0.102982
chr19	54460177	54460275	7292471	0	+	0.602041	(0.58,1]	chr19	750774	14	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	LENG8	ENSG00000167615.17	ENST00000616932.4:ENST00000326764.10:ENST00000376514.6:ENST00000610347.1:ENST00000421200.1	protein_coding	protein_coding	protein_coding	protein_coding	15	561	2	2.87559	3.8188649999999997	4.76214	0.00140221	2.575e-4	0.0180263	0.00908087
chr19	1415441	1415540	7187501	0	+	0.636364	(0.58,1]	chr19	731286	50	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	285	2	3.70306	3.818755	3.93445	0.00293839	2.5756e-4	0.0344265	0.00545201
chr3	185778093	185778193	1970891	0	-	0.33	(0.29,0.33]	chr3	200398	98	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	88	2	2.23691	3.81871	5.40051	0.0269259	0.0252356	0.119301	0.108065
chr9	131587635	131587735	4418993	0	-	0.59	(0.58,1]	chr9	421911	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	RAPGEF1	ENSG00000107263.19	ENST00000372195.5:ENST00000372189.7:ENST00000683357.1:ENST00000372190.7	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.47204	3.818285	5.16453	0.0623526	0.0249802	0.181127	0.10758
chr3	129172568	129172667	1911313	0	-	0.686869	(0.58,1]	chr3	194134	4	INTRON	INTRON	CNBP	ENSG00000169714.17	ENST00000422453.7:ENST00000502976.5:ENST00000451728.6:ENST00000446936.6:ENST00000504813.5:ENST00000500450.6:ENST00000441626.6:ENST00000502372.1:ENST00000512338.1:ENST00000507573.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	145	2	3.04215	3.8182150000000004	4.59428	0.0177015	2.81862e-4	0.0910644	0.00579621
chr4	185364867	185364966	2172565	0	+	0.242424	[0,0.29]	chr4	220054	10	INTRON	INTRON	SNX25	ENSG00000109762.17	ENST00000504959.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	53	2	2.71826	3.818175	4.91809	0.0648743	0.0107911	0.162218	0.0704469
chr15	28218088	28218188	6207152	0	-	0.45	(0.419,0.45]	chr15	611112	2	SS5_PROX	SS5_PROX:INTRON	HERC2	ENSG00000128731.18	ENST00000261609.13	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.81936	3.818035	4.81671	0.08258	0.0405181	0.179396	0.145945
chr18	48604437	48604537	7057309	0	+	0.45	(0.419,0.45]	chr18	720287	637	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000591412.5:ENST00000591387.5:ENST00000587752.5:ENST00000588345.1	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.81936	3.818035	4.81671	0.08258	0.0405181	0.179396	0.145945
chr6	2223042	2223142	3085114	0	-	0.44	(0.419,0.45]	chr6	299526	472	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5	protein_coding	protein_coding	protein_coding	protein_coding	3	80	2	1.9738	3.81796	5.66212	0.0645318	0.0266819	0.185295	0.111563
chr13	19696582	19696682	5660573	0	-	0.34	(0.33,0.36]	chr13	556035	176	INTRON	INTRON	PSPC1	ENSG00000121390.19	ENST00000471658.5:ENST00000492741.5:ENST00000635562.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	131	2	3.19205	3.8179250000000002	4.4438	0.0389619	8.61808e-4	0.13152	0.0127848
chr16	81544081	81544181	6508734	0	+	0.58	(0.523,0.58]	chr16	645911	482	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	5	232	2	2.94965	3.81764	4.68563	0.00453828	0.00253221	0.0401214	0.0317499
chr7	44536428	44536528	3585368	0	-	0.6	(0.58,1]	chr7	345656	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NPC1L1	ENSG00000015520.15	ENST00000381160.8:ENST00000289547.8:ENST00000546276.5:ENST00000423141.1	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.32693	3.8172	5.30747	0.038688	0.0196049	0.142489	0.0955413
chr14	30920505	30920605	5950933	0	-	0.33	(0.29,0.33]	chr14	583071	10	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000366206.2:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	169	2	3.50827	3.8170349999999997	4.1258	0.0208279	4.9689e-4	0.0990379	0.00868736
chr3	184319801	184319899	1643928	0	+	0.581633	(0.58,1]	chr3	172602	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000444134.5:ENST00000442406.5:ENST00000450424.5:ENST00000421110.5:ENST00000435046.7:ENST00000382330.7:ENST00000413967.5:ENST00000426123.5:ENST00000346169.7:ENST00000350481.9:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000456033.5:ENST00000411531.5:ENST00000444861.5:ENST00000484862.5:ENST00000676206.1:ENST00000441154.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	51	2	2.61009	3.8166149999999996	5.02314	0.0747426	0.00638322	0.172361	0.0501889
chr17	40031794	40031868	6898940	0	-	0.540541	(0.523,0.58]	chr17	700958	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MED24	ENSG00000008838.21	ENST00000394126.5:ENST00000356271.7:ENST00000394128.7:ENST00000394127.6:ENST00000535508.6:ENST00000501516.7:ENST00000535071.6:ENST00000580885.5:ENST00000578901.1:ENST00000584077.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	2.98158	3.8165750000000003	4.65157	0.0787008	0.0258432	0.175203	0.116361
chr5	34174444	34174544	2634140	0	-	0.42	(0.419,0.45]	chr5	261349	49	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000514048.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	420	2	3.63073	3.816405	4.00208	0.00792917	3.62697e-4	0.0596361	0.00698309
chr10	79165229	79165329	4533009	0	+	0.57	(0.523,0.58]	chr10	432438	27	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	123	2	3.64376	3.81635	3.98894	0.0173955	0.00237791	0.0901374	0.026
chr12	50643245	50643345	5230842	0	+	0.42	(0.419,0.45]	chr12	507719	20	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5:ENST00000546719.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	138	2	3.23741	3.8163150000000003	4.39522	0.0408938	0.00115346	0.136191	0.0157112
chr22	36367996	36368095	7807204	0	-	0.525253	(0.523,0.58]	chr22	818157	30	INTRON	INTRON	MYH9	ENSG00000100345.23	ENST00000216181.11:ENST00000685801.1:ENST00000692930.1:ENST00000685187.1:ENST00000691687.1:ENST00000685191.1:ENST00000688137.1:ENST00000691296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	62	2	2.19842	3.8162650000000005	5.43411	0.0551586	0.026041	0.169218	0.109673
chr7	139664089	139664188	3722786	0	-	0.414141	(0.39,0.419]	chr7	357498	320	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	3	179	2	3.74786	3.816255	3.88465	0.0138844	0.00182261	0.0805002	0.021657
chrX	133654336	133654436	8112699	0	-	0.32	(0.29,0.33]	chrX	845480	574	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000692074.1:ENST00000667662.1:ENST00000666017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	126	2	3.08421	3.816115	4.54802	0.0418118	5.42681e-4	0.136752	0.00926042
chr19	15645618	15645718	7215410	0	+	0.53	(0.523,0.58]	chr19	737141	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	64	2	3.10715	3.816025	4.5249	0.0418959	0.0266135	0.136901	0.118113
chr17	29129334	29129430	6876455	0	-	0.5625	(0.523,0.58]	chr17	697994	4	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000590242.5:ENST00000528564.2:ENST00000528322.6:ENST00000585573.6:ENST00000533420.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	2.61478	3.8157750000000004	5.01677	0.052707	0.0482765	0.167062	0.144601
chr2	238351648	238351745	1073445	0	+	0.56701	(0.523,0.58]	chr2	116386	19	INTRON	INTRON	TRAF3IP1	ENSG00000204104.12	ENST00000391993.7:ENST00000373327.5:ENST00000462122.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	2.61478	3.8157750000000004	5.01677	0.052707	0.0482765	0.167062	0.144601
chr2	239373100	239373200	1392443	0	-	0.56	(0.523,0.58]	chr2	148759	198	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	2.61478	3.8157750000000004	5.01677	0.052707	0.0482765	0.167062	0.144601
chr6	144348398	144348498	3020494	0	+	0.42	(0.419,0.45]	chr6	295148	37	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1:ENST00000628146.2:ENST00000421035.2	protein_coding	protein_coding	protein_coding	protein_coding	3	80	2	1.93608	3.81574	5.6954	0.0690938	0.0254103	0.19362	0.108573
chr7	152398049	152398149	3737111	0	-	0.43	(0.419,0.45]	chr7	359244	390	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	80	2	1.93608	3.81574	5.6954	0.0690938	0.0254103	0.19362	0.108573
chr17	7944638	7944738	6678321	0	+	0.44	(0.419,0.45]	chr17	670269	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CNTROB	ENSG00000170037.14	ENST00000380262.7:ENST00000563694.6:ENST00000565740.5:ENST00000571632.5:ENST00000576922.5:ENST00000576723.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	62	2	2.65059	3.8155650000000003	4.98054	0.0917577	0.0154548	0.188571	0.0869771
chr7	23371051	23371151	3552208	0	-	0.34	(0.33,0.36]	chr7	343200	80	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	2.98982	3.815565	4.64131	0.0867669	0.027642	0.182221	0.120359
chr20	26009791	26009887	7452321	0	+	0.604167	(0.58,1]	chr20	775551	1	EXON_LNCRNA	EXON_LNCRNA	ENSG00000287569	ENSG00000287569.1	ENST00000668826.1	lncRNA	lncRNA	lncRNA	lncRNA	2	107	2	3.61485	3.8155400000000004	4.01623	0.0133763	0.00161478	0.0790342	0.0199131
chr17	82629728	82629828	6989757	0	-	0.52	(0.485,0.523]	chr17	715033	1	SS3_PROX	SS3_PROX:INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000571835.5:ENST00000573616.5:ENST00000571817.5:ENST00000574828.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	64	2	3.10938	3.8154	4.52142	0.0416572	0.0273555	0.136301	0.119337
chr17	72561415	72561515	6963925	0	-	0.55	(0.523,0.58]	chr17	710389	270	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	5	95	2	1.93892	3.815245	5.69157	0.0419316	0.0172851	0.149108	0.0897247
chr8	22388457	22388557	3770233	0	+	0.61	(0.58,1]	chr8	362727	86	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	3	143	2	3.58144	3.81524	4.04904	0.0056478	0.00158507	0.0495171	0.0196418
chr6	41722760	41722860	3132621	0	-	0.51	(0.485,0.523]	chr6	305481	170	INTRON	INTRON	TFEB	ENSG00000112561.19	ENST00000358871.6:ENST00000373033.6:ENST00000230323.8:ENST00000677531.1:ENST00000403298.9:ENST00000420312.6:ENST00000424495.2:ENST00000678831.1:ENST00000419396.6:ENST00000416140.6:ENST00000678871.1:ENST00000394283.5:ENST00000679237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	3.12385	3.815095	4.50634	0.0939553	0.0193526	0.188571	0.0994526
chr8	127948536	127948636	3919345	0	+	0.51	(0.485,0.523]	chr8	374241	52	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1	lncRNA	lncRNA	lncRNA	lncRNA	1	47	2	3.12385	3.815095	4.50634	0.0939553	0.0193526	0.188571	0.0994526
chr9	137568934	137569034	4435753	0	-	0.51	(0.485,0.523]	chr9	424466	34	INTRON	INTRON	DPH7	ENSG00000148399.13	ENST00000277540.7:ENST00000479650.5:ENST00000475100.5:ENST00000472113.5:ENST00000485189.5:ENST00000467768.5:ENST00000477690.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	3.12385	3.815095	4.50634	0.0939553	0.0193526	0.188571	0.0994526
chr8	22387464	22387563	3770223	0	+	0.464646	(0.45,0.485]	chr8	362727	76	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	7	287	2	3.2948	3.814465	4.33413	0.00547442	0.00124735	0.0488522	0.0166102
chr19	4334144	4334244	7312812	0	-	0.55	(0.523,0.58]	chr19	754659	1	SS3_PROX	SS3_PROX:INTRON	STAP2	ENSG00000178078.12	ENST00000594605.6:ENST00000600324.5:ENST00000599736.5:ENST00000601482.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	57	2	2.66054	3.81384	4.96714	0.0806884	0.0108948	0.177452	0.0706366
chr6	34354269	34354369	3123451	0	-	0.54	(0.523,0.58]	chr6	304665	119	INTRON	INTRON	NUDT3:RPS10-NUDT3	ENSG00000272325.2:ENSG00000270800.3	ENST00000607016.2:ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	2.66054	3.81384	4.96714	0.0806884	0.0108948	0.177452	0.0706366
chr1	155668226	155668326	597848	0	-	0.49	(0.485,0.523]	chr1	70121	2	SS5_PROX	SS5_PROX:INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000442834.6:ENST00000355499.9:ENST00000405763.7:ENST00000488784.5:ENST00000493625.5:ENST00000477470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	2.45723	3.813675	5.17012	0.0700289	0.038581	0.195209	0.131324
chr12	123618574	123618668	5346825	0	+	0.489362	(0.485,0.523]	chr12	522715	7	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	DDX55	ENSG00000111364.16	ENST00000542286.5:ENST00000238146.9:ENST00000538744.5:ENST00000541259.1:ENST00000543016.1:ENST00000421670.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	47	2	2.45723	3.813675	5.17012	0.0700289	0.038581	0.195209	0.131324
chr5	139657057	139657157	2549731	0	+	0.49	(0.485,0.523]	chr5	253168	55	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.45723	3.813675	5.17012	0.0700289	0.038581	0.195209	0.131324
chr9	725078	725178	4104672	0	+	0.5	(0.485,0.523]	chr9	390844	110	INTRON	INTRON	KANK1	ENSG00000107104.21	ENST00000382303.5:ENST00000691319.1:ENST00000382297.7:ENST00000674102.1:ENST00000689926.1:ENST00000489369.5:ENST00000619269.5:ENST00000689779.1:ENST00000692130.1:ENST00000354485.5:ENST00000685947.1:ENST00000382289.7:ENST00000690372.1:ENST00000693656.1:ENST00000687796.1:ENST00000685481.1:ENST00000382286.3:ENST00000692757.1:ENST00000690348.1:ENST00000688039.1:ENST00000692345.1:ENST00000685380.1:ENST00000689214.1:ENST00000691645.1:ENST00000693143.1:ENST00000685590.1:ENST00000693021.1:ENST00000687662.1:ENST00000693088.1:ENST00000688567.1:ENST00000686846.1:ENST00000382293.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	2.45723	3.813675	5.17012	0.0700289	0.038581	0.195209	0.131324
chr20	38427776	38427873	7561105	0	-	0.474227	(0.45,0.485]	chr20	789772	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	65	2	2.73028	3.8135649999999996	4.89685	0.0614781	0.0192493	0.158506	0.0994526
chr2	73853337	73853437	833287	0	+	0.28	[0,0.29]	chr2	94131	4	UTR3	UTR3:EXON_MRNA:INTRON	STAMBP	ENSG00000124356.17	ENST00000339566.7:ENST00000684095.1:ENST00000682847.1:ENST00000683317.1:ENST00000683036.1:ENST00000682157.1:ENST00000683349.1:ENST00000684337.1:ENST00000683247.1:ENST00000682683.1:ENST00000682329.1:ENST00000683149.1:ENST00000682851.1:ENST00000394070.7:ENST00000683728.1:ENST00000409707.6:ENST00000683518.1:ENST00000684585.1:ENST00000683434.1:ENST00000682352.1:ENST00000684697.1:ENST00000682592.1:ENST00000683718.1:ENST00000682423.1:ENST00000478946.2:ENST00000684200.1:ENST00000684355.1:ENST00000684774.1:ENST00000536064.2:ENST00000683465.1:ENST00000684716.1:ENST00000683016.1:ENST00000684174.1:ENST00000684703.1:ENST00000682799.1:ENST00000682998.1:ENST00000682379.1:ENST00000684312.1:ENST00000683852.1:ENST00000684321.1:ENST00000394073.6:ENST00000684671.1:ENST00000682848.1:ENST00000683877.1:ENST00000683530.1:ENST00000683027.1:ENST00000683304.1:ENST00000682784.1:ENST00000683205.1:ENST00000682351.1:ENST00000683818.1:ENST00000684426.1:ENST00000683582.1:ENST00000683417.1:ENST00000683594.1:ENST00000682387.1:ENST00000682747.1:ENST00000682105.1:ENST00000683928.1:ENST00000683391.1:ENST00000684758.1:ENST00000682558.1:ENST00000683902.1:ENST00000432295.7:ENST00000486458.2:ENST00000683314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	3.08401	3.81338	4.54275	0.0681032	0.0199046	0.164448	0.100864
chr3	13229020	13229120	1691432	0	-	0.45	(0.419,0.45]	chr3	176566	645	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.58571	3.8130699999999997	5.04043	0.0625897	0.0613171	0.18013	0.160305
chr3	65922163	65922263	1814700	0	-	0.42	(0.419,0.45]	chr3	187310	146	INTRON	INTRON	MAGI1:MAGI1-IT1	ENSG00000151276.24:ENSG00000272610.1	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5:ENST00000460754.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	1	49	2	2.58571	3.8130699999999997	5.04043	0.0625897	0.0613171	0.18013	0.160305
chr3	172218875	172218975	1629265	0	+	0.45	(0.419,0.45]	chr3	170570	317	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	49	2	2.58571	3.8130699999999997	5.04043	0.0625897	0.0613171	0.18013	0.160305
chr8	133295847	133295947	4084285	0	-	0.6	(0.58,1]	chr8	388361	4	SS5_PROX	SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	189	2	2.47204	3.813025	5.15401	0.0623526	5.00792e-4	0.181127	0.0129939
chr7	47361989	47362089	3587411	0	-	0.45	(0.419,0.45]	chr7	346030	153	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	3	80	2	2.18148	3.812975	5.44447	0.043587	0.0364384	0.152811	0.128173
chr2	239279778	239279878	1391506	0	-	0.62	(0.58,1]	chr2	148740	282	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	107	2	3.29173	3.812875	4.33402	0.0243429	6.31529e-4	0.106588	0.0102754
chr17	77487023	77487123	6805252	0	+	0.68	(0.58,1]	chr17	686822	2	SS3_PROX	SS3_PROX:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	57	2	2.6194	3.8126249999999997	5.00585	0.0323732	0.0202577	0.121593	0.102015
chr2	172435064	172435164	955521	0	+	0.46	(0.45,0.485]	chr2	104992	67	INTRON	INTRON	ITGA6	ENSG00000091409.16	ENST00000412899.5:ENST00000409532.5:ENST00000684293.1:ENST00000409080.6:ENST00000442250.6:ENST00000264107.12:ENST00000458358.5	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.98123	3.812345	4.64346	0.0850039	0.0270875	0.181766	0.119337
chr8	127916362	127916460	3919018	0	+	0.459184	(0.45,0.485]	chr8	374220	40	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000521122.2:ENST00000520913.2:ENST00000519481.6:ENST00000651568.1:ENST00000669082.1:ENST00000665166.1:ENST00000656948.1:ENST00000671088.1:ENST00000664924.1:ENST00000670204.1:ENST00000652695.1:ENST00000670602.1:ENST00000651664.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1:ENST00000653406.1:ENST00000658242.1	lncRNA	lncRNA	lncRNA	lncRNA	1	47	2	2.98123	3.812345	4.64346	0.0850039	0.0270875	0.181766	0.119337
chr11	115307055	115307155	5129156	0	-	0.26	[0,0.29]	chr11	498106	197	INTRON	INTRON	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000541434.5:ENST00000543249.1:ENST00000540951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	2.51762	3.812275	5.10693	0.0610332	0.0292928	0.18013	0.116079
chr12	23753337	23753437	5386552	0	-	0.37	(0.36,0.39]	chr12	528164	119	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000537393.5:ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	66	2	2.57496	3.8122249999999998	5.04949	0.0563927	0.0288176	0.154188	0.123783
chr2	235505140	235505240	1062647	0	+	0.33	(0.29,0.33]	chr2	115651	99	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.65466	3.8119	4.96914	0.0498776	0.0481918	0.161215	0.144601
chr17	7177402	7177478	6847849	0	-	0.592105	(0.58,1]	chr17	693466	2	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1:ENST00000573596.1:ENST00000573083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	108	2	3.73069	3.811635	3.89258	0.0106925	0.00229214	0.0701355	0.0253494
chr2	11517503	11517602	720037	0	+	0.454545	(0.45,0.485]	chr2	84086	1	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000628795.2	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.5616	3.81149	5.06138	0.0598406	0.0492008	0.177269	0.146142
chr20	47329158	47329258	7570617	0	-	0.48	(0.45,0.485]	chr20	791082	102	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.5616	3.81149	5.06138	0.0598406	0.0492008	0.177269	0.146142
chr10	75890524	75890624	4525074	0	+	0.49	(0.485,0.523]	chr10	432292	66	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.97038	3.8111800000000002	4.65198	0.0783889	0.0267011	0.175203	0.118343
chr11	710886	710986	4785347	0	+	0.71	(0.58,1]	chr11	458133	4	SS5_PROX	SS5_PROX:INTRON	EPS8L2	ENSG00000177106.17	ENST00000524763.5:ENST00000533256.5:ENST00000614442.4:ENST00000534755.5:ENST00000529346.5:ENST00000650127.1:ENST00000526909.5:ENST00000318562.13:ENST00000533500.5:ENST00000527807.5:ENST00000531348.5:ENST00000530636.5:ENST00000526198.5:ENST00000530118.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	112	2	3.68463	3.8111800000000002	3.93773	0.00708574	0.00404771	0.0558168	0.0371291
chr6	169622051	169622151	3304077	0	-	0.49	(0.485,0.523]	chr6	319826	80	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	2.97038	3.8111800000000002	4.65198	0.0783889	0.0267011	0.175203	0.118343
chr13	26254641	26254741	5551192	0	+	0.54	(0.523,0.58]	chr13	547912	1	CDS_START	CDS_START:CDS:EXON_MRNA	CDK8	ENSG00000132964.12	ENST00000536792.5:ENST00000381527.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	63	2	2.71726	3.8111300000000004	4.905	0.0563605	0.0188054	0.154188	0.0980631
chr19	5900146	5900245	7318272	0	-	0.616162	(0.58,1]	chr19	755741	28	INTRON	INTRON	NDUFA11	ENSG00000174886.14	ENST00000418389.6:ENST00000308961.5:ENST00000592634.5:ENST00000593233.1:ENST00000650663.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	2.02776	3.811115	5.59447	0.0700362	0.0117666	0.195209	0.0737098
chr6	157028024	157028123	3051973	0	+	0.363636	(0.36,0.39]	chr6	297032	34	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1:ENST00000635849.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	48	2	2.79528	3.8104999999999998	4.82572	0.0751666	0.0413701	0.172839	0.148333
chr16	89351385	89351484	6660332	0	-	0.474747	(0.45,0.485]	chr16	666695	77	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	87	2	2.04088	3.80971	5.57854	0.0418398	0.0230065	0.149021	0.102982
chr17	43542979	43543079	6909598	0	-	0.63	(0.58,1]	chr17	703271	61	INTRON	INTRON	ETV4	ENSG00000175832.13	ENST00000538265.5:ENST00000319349.10:ENST00000393664.6:ENST00000545954.5:ENST00000545089.5:ENST00000591713.5:ENST00000590236.5:ENST00000585508.5:ENST00000587151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	106	2	3.48889	3.8095049999999997	4.13012	0.016972	0.00116063	0.0889149	0.0157704
chr19	1172228	1172328	7305775	0	-	0.63	(0.58,1]	chr19	753058	32	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	2	107	2	3.66231	3.8090200000000003	3.95573	0.0122106	0.00191878	0.0752279	0.0223755
chr11	46099722	46099822	5030618	0	-	0.28	[0,0.29]	chr11	486583	71	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000689695.1:ENST00000685188.1:ENST00000532883.5:ENST00000524497.5:ENST00000693122.1:ENST00000529734.5:ENST00000529782.5:ENST00000688222.1:ENST00000690039.1:ENST00000533757.5:ENST00000525438.5:ENST00000692265.1:ENST00000527782.5:ENST00000532010.5:ENST00000528893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	2.79702	3.80899	4.82096	0.0456837	0.0360966	0.142336	0.139793
chr12	31285450	31285549	5405648	0	-	0.242424	[0,0.29]	chr12	529415	22	INTRON	INTRON	SINHCAF	ENSG00000139146.14	ENST00000337682.9:ENST00000539409.5:ENST00000448582.6:ENST00000454658.6:ENST00000544921.5:ENST00000542983.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	2.79702	3.80899	4.82096	0.0456837	0.0360966	0.142336	0.139793
chr6	12065811	12065911	2854677	0	+	0.41	(0.39,0.419]	chr6	278961	267	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.7933500000000002	3.80887	4.82439	0.0762206	0.0415789	0.174484	0.148959
chr5	57186892	57186992	2423930	0	+	0.32	(0.29,0.33]	chr5	241800	101	INTRON	INTRON	GPBP1	ENSG00000062194.16	ENST00000424459.7:ENST00000514387.6:ENST00000506184.7:ENST00000511209.5	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.05996	3.8086649999999995	5.55737	0.0722239	0.0196268	0.199502	0.095549
chr1	12584745	12584845	402450	0	-	0.61	(0.58,1]	chr1	46222	37	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	54	2	2.95313	3.808645	4.66416	0.0435972	0.0144381	0.139245	0.0833845
chr16	85371943	85372043	6516790	0	+	0.62	(0.58,1]	chr16	646391	126	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.55596	3.8083299999999998	5.0607	0.0534085	0.029633	0.167062	0.116079
chr7	47360695	47360794	3587398	0	-	0.626263	(0.58,1]	chr7	346030	140	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.55596	3.8083299999999998	5.0607	0.0534085	0.029633	0.167062	0.116079
chr9	133803986	133804085	4428431	0	-	0.606061	(0.58,1]	chr9	423268	58	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.55596	3.8083299999999998	5.0607	0.0534085	0.029633	0.167062	0.116079
chr9	134412493	134412592	4261558	0	+	0.636364	(0.58,1]	chr9	406352	30	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000481739.2:ENST00000356384.4:ENST00000672570.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.55596	3.8083299999999998	5.0607	0.0534085	0.029633	0.167062	0.116079
chr1	245798941	245799041	698761	0	-	0.45	(0.419,0.45]	chr1	82352	101	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000366517.5:ENST00000366516.5:ENST00000490107.6:ENST00000470510.5:ENST00000483072.5:ENST00000490322.1:ENST00000493441.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	61	2	2.5763	3.80817	5.04004	0.100818	0.0137308	0.196131	0.0814223
chr7	75922206	75922298	3396676	0	+	0.423913	(0.419,0.45]	chr7	328052	6	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000449920.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	61	2	2.5763	3.80817	5.04004	0.100818	0.0137308	0.196131	0.0814223
chr16	81565576	81565676	6508949	0	+	0.61	(0.58,1]	chr16	645911	697	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.6577	3.80792	4.95814	0.0695799	0.0074469	0.167028	0.0553519
chr16	85229865	85229965	6515367	0	+	0.53	(0.523,0.58]	chr16	646377	21	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	68	2	3.27435	3.807765	4.34118	0.0372357	0.0321785	0.139793	0.121593
chr1	214006762	214006861	339546	0	+	0.40404	(0.39,0.419]	chr1	38103	11	INTRON	INTRON	PROX1	ENSG00000117707.16	ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2	protein_coding	protein_coding	protein_coding	protein_coding	3	178	2	3.7953	3.8074950000000003	3.81969	0.0154725	0.00160854	0.0849828	0.0198638
chr16	23466792	23466891	6568566	0	-	0.606061	(0.58,1]	chr16	655371	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000567339.1:ENST00000568922.1:ENST00000566685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	145	2	3.41349	3.8074399999999997	4.20139	0.00411606	0.00257862	0.0414433	0.0275472
chr13	33262260	33262360	5685220	0	-	0.61	(0.58,1]	chr13	558196	564	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	69	2	2.44972	3.807125	5.16453	0.0249802	0.0184955	0.10758	0.096816
chr6	128107880	128107980	3253032	0	-	0.39	(0.36,0.39]	chr6	315160	175	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000531050.5:ENST00000524534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	2.61656	3.80664	4.99672	0.0604395	0.057025	0.173546	0.158506
chr9	114192810	114192909	4226078	0	+	0.454545	(0.45,0.485]	chr9	400764	94	INTRON	INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8:ENST00000451716.5:ENST00000494090.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	64	2	2.65944	3.80662	4.9538	0.0569772	0.022472	0.154343	0.108193
chr1	14942723	14942823	43834	0	+	0.55	(0.523,0.58]	chr1	4384	123	INTRON	INTRON	KAZN	ENSG00000189337.17	ENST00000636203.1:ENST00000376030.7:ENST00000491547.1:ENST00000503743.5:ENST00000361144.9:ENST00000400798.6:ENST00000376028.8	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	2.54344	3.8065049999999996	5.06957	0.0599121	0.0448011	0.177269	0.140478
chr14	54648883	54648983	5820262	0	+	0.55	(0.523,0.58]	chr14	569049	804	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.54344	3.8065049999999996	5.06957	0.0599121	0.0448011	0.177269	0.140478
chr17	15493484	15493584	6860371	0	-	0.53	(0.523,0.58]	chr17	695075	179	INTRON	INTRON	TVP23C-CDRT4:CDRT4	ENSG00000259024.6:ENSG00000239704.11	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.54344	3.8065049999999996	5.06957	0.0599121	0.0448011	0.177269	0.140478
chr7	206510	206609	3305719	0	+	0.656566	(0.58,1]	chr7	320155	91	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6:ENST00000477004.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.84993	3.8063849999999997	4.76284	0.0471737	0.0297842	0.143232	0.126591
chr7	210573	210673	3305760	0	+	0.62	(0.58,1]	chr7	320161	12	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.84993	3.8063849999999997	4.76284	0.0471737	0.0297842	0.143232	0.126591
chr17	57107761	57107845	6759593	0	+	0.428571	(0.419,0.45]	chr17	681980	2	SS3_PROX	SS3_PROX:INTRON	AKAP1	ENSG00000121057.13	ENST00000337714.8:ENST00000571629.5:ENST00000621116.4:ENST00000572557.5:ENST00000481416.5:ENST00000539273.5:ENST00000314126.4:ENST00000576295.5:ENST00000573326.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	68	2	2.67985	3.806375	4.9329	0.0716557	0.0238876	0.168159	0.111747
chr2	219572210	219572309	1036513	0	+	0.616162	(0.58,1]	chr2	112995	24	INTRON	INTRON	INHA	ENSG00000123999.5	ENST00000489456.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	130	2	3.20215	3.80628	4.41041	0.0136092	0.00263932	0.0811697	0.0325876
chr2	163695203	163695303	1295914	0	-	0.39	(0.36,0.39]	chr2	139073	830	INTRON	INTRON	FIGN	ENSG00000182263.14	ENST00000409634.5:ENST00000333129.4:ENST00000482917.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	3.05132	3.8060400000000003	4.56076	0.103289	0.0252548	0.197541	0.114966
chr19	33203773	33203869	7240910	0	+	0.6875	(0.58,1]	chr19	741410	4	INTRON	INTRON	LRP3	ENSG00000130881.14	ENST00000592484.5:ENST00000253193.9:ENST00000590275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	106	2	3.35086	3.805875	4.26089	0.0218816	7.87512e-4	0.101015	0.0120243
chr7	47276711	47276808	3586544	0	-	0.412371	(0.39,0.419]	chr7	345959	17	UTR3	UTR3:EXON_MRNA	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000428457.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.84832	3.805445	4.76257	0.0822354	0.0375279	0.179396	0.139823
chr20	43527459	43527559	7480793	0	+	0.54	(0.523,0.58]	chr20	779295	84	INTRON	INTRON	L3MBTL1	ENSG00000185513.17	ENST00000649501.1:ENST00000439769.2:ENST00000649084.1:ENST00000418998.7:ENST00000427442.8:ENST00000649917.1:ENST00000647860.1:ENST00000649698.1:ENST00000422861.3:ENST00000473289.2:ENST00000648786.1:ENST00000648715.1:ENST00000648570.1:ENST00000650071.1:ENST00000650484.1:ENST00000648421.1:ENST00000373135.8:ENST00000373134.5:ENST00000457824.5:ENST00000473981.2:ENST00000647827.1:ENST00000445228.6:ENST00000648774.1:ENST00000497347.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	58	2	2.77655	3.805395	4.83424	0.0685533	0.0144272	0.165066	0.0833845
chr2	226781739	226781839	1379693	0	-	0.39	(0.36,0.39]	chr2	147292	451	INTRON	INTRON	IRS1	ENSG00000169047.6	ENST00000305123.6	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	2.15686	3.80523	5.4536	0.0642245	0.0321864	0.184676	0.121593
chr5	131763260	131763360	2758554	0	-	0.41	(0.39,0.419]	chr5	270257	182	INTRON	INTRON	FNIP1	ENSG00000217128.13	ENST00000510461.6:ENST00000307954.12:ENST00000307968.11:ENST00000511848.1	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.62127	3.805065	4.98886	0.0923527	0.0142222	0.188571	0.0833845
chr16	50618504	50618604	6452113	0	+	0.56	(0.523,0.58]	chr16	639912	25	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.39285	3.80506	5.21727	0.0376513	0.0361597	0.140049	0.127853
chr19	2334821	2334921	7189469	0	+	0.65	(0.58,1]	chr19	731781	1	SS5_PROX	SS5_PROX:INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	57	2	2.21459	3.8050249999999997	5.39546	0.0487458	0.0168207	0.160725	0.0884836
chr7	139701946	139702046	3723165	0	-	0.6	(0.58,1]	chr7	357498	699	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.21459	3.8050249999999997	5.39546	0.0487458	0.0168207	0.160725	0.0884836
chr9	133733742	133733842	4427919	0	-	0.61	(0.58,1]	chr9	423129	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000427237.6:ENST00000371867.5:ENST00000298628.6	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.21459	3.8050249999999997	5.39546	0.0487458	0.0168207	0.160725	0.0884836
chr6	158243094	158243194	3060946	0	+	0.35	(0.33,0.36]	chr6	297572	104	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	48	2	3.03916	3.804755	4.57035	0.0945416	0.0250322	0.188571	0.114418
chr1	61112343	61112442	146403	0	+	0.353535	(0.33,0.36]	chr1	17144	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	128	2	3.32018	3.8047050000000002	4.28923	0.0319184	0.0013058	0.121593	0.0171747
chr12	132538542	132538642	5353001	0	+	0.72	(0.58,1]	chr12	523670	102	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.78186	3.804695	4.82753	0.0427798	0.0342923	0.13762	0.13449
chr14	103104737	103104787	5921863	0	+	0.74	(0.58,1]	chr14	579215	1	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.78186	3.804695	4.82753	0.0427798	0.0342923	0.13762	0.13449
chr16	89314479	89314577	6659958	0	-	0.622449	(0.58,1]	chr16	666672	5	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.78186	3.804695	4.82753	0.0427798	0.0342923	0.13762	0.13449
chr8	120804074	120804174	4059944	0	-	0.41	(0.39,0.419]	chr8	386607	1098	INTRON	INTRON	SNTB1	ENSG00000172164.15	ENST00000395601.7:ENST00000517992.2:ENST00000648490.1:ENST00000519177.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	101	2	1.93926	3.80459	5.66992	0.0464503	0.0237738	0.156036	0.105296
chr2	27352913	27353012	1111977	0	-	0.343434	(0.33,0.36]	chr2	121485	19	INTRON	INTRON	GTF3C2	ENSG00000115207.15	ENST00000359541.6:ENST00000264720.8:ENST00000457748.1:ENST00000423998.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.77362	3.8045	4.83538	0.0679743	0.041944	0.164413	0.149108
chr3	42215409	42215509	1451705	0	+	0.45	(0.419,0.45]	chr3	154959	29	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2:ENST00000327628.10:ENST00000396175.5	protein_coding	protein_coding	protein_coding	protein_coding	1	63	2	2.75532	3.804485	4.85365	0.0800906	0.0197641	0.177372	0.100774
chr13	33626179	33626279	5688835	0	-	0.41	(0.39,0.419]	chr13	558272	80	INTRON	INTRON	ENSG00000230490	ENSG00000230490.4	ENST00000686875.1:ENST00000454681.2:ENST00000655117.2:ENST00000690486.1:ENST00000654283.1	lncRNA	lncRNA	lncRNA	lncRNA	1	49	2	3.04938	3.804405	4.55943	0.104562	0.0253994	0.19835	0.115502
chr16	81545381	81545481	6508747	0	+	0.41	(0.39,0.419]	chr16	645911	495	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	3.04938	3.804405	4.55943	0.104562	0.0253994	0.19835	0.115502
chr16	31705082	31705171	6440560	0	+	0.505618	(0.485,0.523]	chr16	638688	5	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	CLUHP3:ENSG00000276867	ENSG00000131797.13:ENSG00000276867.1	ENST00000254109.10:ENST00000686087.1:ENST00000692346.1:ENST00000693004.1:ENST00000690479.1:ENST00000691836.1:ENST00000525610.6:ENST00000687555.1:ENST00000688517.1:ENST00000691015.1:ENST00000685223.1:ENST00000684847.1:ENST00000686901.1:ENST00000532304.6:ENST00000692505.1:ENST00000689776.1:ENST00000687897.1:ENST00000563678.1:ENST00000411844.1:ENST00000614576.1	lncRNA	retained_intron	lncRNA:transcribed_unprocessed_pseudogene	retained_intron:lncRNA:processed_transcript:transcribed_unprocessed_pseudogene	2	62	2	2.13331	3.8037799999999997	5.47425	0.0626854	0.0243396	0.181933	0.106588
chr12	2960952	2961052	5157693	0	+	0.57	(0.523,0.58]	chr12	501258	2	INTRON	INTRON	TEAD4	ENSG00000197905.10	ENST00000358409.7:ENST00000359864.8:ENST00000540314.2:ENST00000536826.2:ENST00000543035.6:ENST00000397122.6:ENST00000443986.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	61	2	2.43762	3.803655	5.16969	0.0387762	0.0343548	0.134666	0.131324
chr9	95003016	95003116	4190023	0	+	0.47	(0.45,0.485]	chr9	398123	232	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000297979.9:ENST00000424143.5:ENST00000462125.5:ENST00000479161.5:ENST00000451893.5:ENST00000460573.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	58	2	2.65647	3.803515	4.95056	0.0837071	0.0127826	0.181508	0.0773423
chr19	951795	951895	7185364	0	+	0.49	(0.485,0.523]	chr19	730741	187	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	79	2	2.30509	3.80334	5.30159	0.0761321	0.00529578	0.174484	0.044517
chr3	185816274	185816373	1971274	0	-	0.464646	(0.45,0.485]	chr3	200402	18	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1:ENST00000466214.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	57	2	2.53391	3.8030549999999996	5.0722	0.0985287	0.00988295	0.193064	0.0664239
chr13	98279698	98279798	5635028	0	+	0.5	(0.485,0.523]	chr13	553480	345	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	2.46312	3.8028	5.14248	0.060188	0.00761903	0.158506	0.0561937
chr16	8711336	8711436	6381503	0	+	0.54	(0.523,0.58]	chr16	631147	279	INTRON	INTRON	ABAT	ENSG00000183044.12	ENST00000564714.5:ENST00000268251.13:ENST00000563992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	145	2	2.53438	3.8025900000000004	5.0708	0.0957531	1.05737e-4	0.189038	0.00286061
chr8	26589571	26589671	3779849	0	+	0.61	(0.58,1]	chr8	364064	52	INTRON	INTRON	DPYSL2	ENSG00000092964.18	ENST00000521913.7:ENST00000311151.9:ENST00000523027.1	protein_coding	protein_coding	protein_coding	protein_coding	2	85	2	2.94094	3.80255	4.66416	0.0214386	0.0144381	0.100405	0.0833845
chr16	87856724	87856824	6657041	0	-	0.6	(0.58,1]	chr16	666007	45	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.40217	3.8022	5.20223	0.100879	0.00411607	0.196131	0.0374453
chr6	170397573	170397673	3076555	0	+	0.49	(0.485,0.523]	chr6	299192	16	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	3.02337	3.802185	4.581	0.085711	0.023933	0.181766	0.111785
chr1	8509175	8509272	392632	0	-	0.56701	(0.523,0.58]	chr1	45009	1	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000656437.1:ENST00000464972.5:ENST00000659924.1:ENST00000480342.5:ENST00000507012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	125	2	3.78755	3.80194	3.8163299999999998	0.012872	0.00401039	0.0772995	0.0371192
chr16	50621808	50621908	6452147	0	+	0.67	(0.58,1]	chr16	639917	1	SS5_PROX	SS5_PROX:INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	3	144	2	3.15491	3.801565	4.44822	0.0142368	4.4502e-4	0.0817691	0.00806076
chr10	87221954	87222054	4723362	0	-	0.48	(0.45,0.485]	chr10	450862	82	INTRON	INTRON	NUTM2A-AS1	ENSG00000223482.9	ENST00000692417.1:ENST00000688214.1:ENST00000659257.1:ENST00000671543.1:ENST00000451940.6:ENST00000687947.1:ENST00000663644.1:ENST00000684884.1:ENST00000664664.1:ENST00000446751.6	lncRNA	lncRNA	lncRNA	lncRNA	1	47	2	2.49029	3.801295	5.1123	0.0676934	0.0458344	0.193219	0.142336
chr3	194476517	194476617	1979638	0	-	0.48	(0.45,0.485]	chr3	201444	84	INTRON	INTRON	ATP13A3	ENSG00000133657.17	ENST00000687055.1:ENST00000645538.1:ENST00000645319.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.49029	3.801295	5.1123	0.0676934	0.0458344	0.193219	0.142336
chr16	78867433	78867533	6503093	0	+	0.38	(0.36,0.39]	chr16	645717	871	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.9032	3.80126	4.69932	0.0877431	0.0337607	0.183437	0.133139
chr19	18467407	18467506	7347865	0	-	0.606061	(0.58,1]	chr19	761486	11	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	149	2	3.41854	3.8012	4.18386	0.00841183	9.90719e-4	0.0616845	0.0141138
chr7	157339631	157339725	3521735	0	+	0.521277	(0.485,0.523]	chr7	340127	15	INTRON	INTRON	DNAJB6	ENSG00000105993.15	ENST00000441561.5:ENST00000429029.6:ENST00000262177.9:ENST00000486083.6:ENST00000417758.5:ENST00000459889.5:ENST00000443280.5:ENST00000488001.5:ENST00000441291.5:ENST00000437030.5:ENST00000412557.5:ENST00000453383.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	2.53228	3.801135	5.06999	0.0614918	0.0445854	0.18013	0.140478
chr17	15519444	15519543	6860635	0	-	0.40404	(0.39,0.419]	chr17	695092	24	INTRON	INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	133	2	3.64319	3.8009250000000003	3.95866	0.0206585	0.00329322	0.0984899	0.0323365
chr4	94465870	94465970	2087800	0	+	0.38	(0.36,0.39]	chr4	212898	88	INTRON	INTRON	PDLIM5	ENSG00000163110.15	ENST00000437932.5:ENST00000615540.4:ENST00000318007.9:ENST00000380180.7:ENST00000514830.5:ENST00000509333.5:ENST00000503974.5:ENST00000317968.9:ENST00000627587.2:ENST00000542407.5:ENST00000514743.5:ENST00000508216.5:ENST00000511767.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	136	2	3.77418	3.8007799999999996	3.82738	0.015089	0.00513898	0.0841543	0.0435696
chr10	79176714	79176814	4533124	0	+	0.51	(0.485,0.523]	chr10	432438	142	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	2.70247	3.800585	4.8987	0.0759932	0.0129327	0.174411	0.0778105
chr21	45478853	45478944	7631062	0	+	0.516484	(0.485,0.523]	chr21	797700	1	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	2.70247	3.800585	4.8987	0.0759932	0.0129327	0.174411	0.0778105
chr16	87861597	87861696	6657090	0	-	0.666667	(0.58,1]	chr16	666007	94	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.97713	3.80058	4.62403	0.0578275	0.0226795	0.154343	0.108193
chr12	3235240	3235339	5160129	0	+	0.343434	(0.33,0.36]	chr12	501358	195	INTRON	INTRON	TSPAN9	ENSG00000011105.14	ENST00000537971.5:ENST00000444315.6:ENST00000011898.10:ENST00000649909.1:ENST00000640568.1:ENST00000407263.2:ENST00000431374.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	64	2	3.02157	3.8005750000000003	4.57958	0.0503796	0.0288057	0.148216	0.123764
chrX	20265922	20266011	7995422	0	-	0.595506	(0.58,1]	chrX	836377	1	UTR5	UTR5:EXON_MRNA:INTRON	RPS6KA3	ENSG00000177189.14	ENST00000379565.9:ENST00000643085.1:ENST00000645270.1:ENST00000643402.1:ENST00000644368.1:ENST00000645268.1:ENST00000646610.1:ENST00000643337.1:ENST00000642835.1:ENST00000644893.1:ENST00000438357.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	106	2	3.61485	3.8005750000000003	3.9863	0.0133763	0.0017591	0.0790342	0.0211077
chr8	96577053	96577153	3869569	0	+	0.39	(0.36,0.39]	chr8	371295	384	INTRON	INTRON	SDC2	ENSG00000169439.12	ENST00000302190.9:ENST00000518385.5:ENST00000522911.5	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	2.50047	3.800435	5.1004	0.0526991	0.033505	0.14912	0.133139
chr10	103833920	103834020	4758444	0	-	0.57	(0.523,0.58]	chr10	454819	322	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.24954	3.80039	5.35124	0.0500176	0.0295772	0.161481	0.116079
chr6	169575038	169575138	3303605	0	-	0.57	(0.523,0.58]	chr6	319808	21	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	61	2	2.24954	3.80039	5.35124	0.0500176	0.0295772	0.161481	0.116079
chr2	61537561	61537660	1158372	0	-	0.585859	(0.58,1]	chr2	126972	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676789.1:ENST00000678741.1:ENST00000406957.5:ENST00000443240.5:ENST00000481214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	284	2	2.69977	3.800175	4.90058	0.00301658	8.93566e-4	0.0305643	0.017813
chr15	98805980	98806080	6194906	0	+	0.51	(0.485,0.523]	chr15	609667	211	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1:ENST00000557938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	124	2	3.76329	3.80003	3.83677	0.0140831	0.00360381	0.08114	0.0342681
chr1	44240819	44240918	459579	0	-	0.606061	(0.58,1]	chr1	55299	81	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.71042	3.799935	4.88945	0.0396128	0.0388928	0.143388	0.131324
chr11	70535930	70536030	5059632	0	-	0.67	(0.58,1]	chr11	492663	326	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	2.71042	3.799935	4.88945	0.0396128	0.0388928	0.143388	0.131324
chr12	132542922	132543022	5353045	0	+	0.7	(0.58,1]	chr12	523670	146	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.71042	3.799935	4.88945	0.0396128	0.0388928	0.143388	0.131324
chr17	17739751	17739851	6689433	0	+	0.67	(0.58,1]	chr17	671344	152	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.71042	3.799935	4.88945	0.0396128	0.0388928	0.143388	0.131324
chrX	19797834	19797934	7992021	0	-	0.41	(0.39,0.419]	chrX	836072	503	INTRON	INTRON	SH3KBP1	ENSG00000147010.18	ENST00000397821.8:ENST00000379698.8:ENST00000379697.7	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.90127	3.799625	4.69798	0.088901	0.0339406	0.183874	0.133629
chrX	129448943	129449042	8099449	0	-	0.414141	(0.39,0.419]	chrX	844596	1	INTRON	INTRON	SMARCA1	ENSG00000102038.16	ENST00000617310.4:ENST00000371122.8:ENST00000371121.5:ENST00000371123.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	199	2	3.63988	3.79927	3.95866	0.010136300000000001	0.00329322	0.0682324	0.0323365
chr1	33036101	33036200	440135	0	-	0.494949	(0.485,0.523]	chr1	52532	44	UTR3	UTR3:EXON_MRNA:INTRON	AK2	ENSG00000004455.18	ENST00000373449.7:ENST00000672715.1:ENST00000550338.6:ENST00000695599.1:ENST00000354858.11:ENST00000695600.1:ENST00000695601.1:ENST00000491241.2:ENST00000695602.1:ENST00000469238.2:ENST00000695603.1:ENST00000695604.1:ENST00000672308.1:ENST00000548033.5:ENST00000467905.5:ENST00000480134.5:ENST00000695605.1:ENST00000673291.1:ENST00000487289.1:ENST00000548559.1:ENST00000551979.1:ENST00000695606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	61	2	2.33451	3.79913	5.26375	0.0426546	0.0335928	0.149802	0.124319
chr16	85376741	85376841	6516838	0	+	0.66	(0.58,1]	chr16	646391	174	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	120	2	3.39676	3.799075	4.20139	0.0085026	0.00411606	0.0608246	0.0414433
chr4	10101912	10102011	2195669	0	-	0.353535	(0.33,0.36]	chr4	222412	24	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	64	2	2.53891	3.799055	5.0592	0.0504445	0.0300873	0.148216	0.126768
chr16	23466891	23466991	6568567	0	-	0.59	(0.58,1]	chr16	655371	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000567339.1:ENST00000568922.1:ENST00000566685.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	69	2	2.18715	3.799045	5.41094	0.0781652	0.00240622	0.175203	0.0261006
chr2	121457286	121457386	1262290	0	-	0.4	(0.39,0.419]	chr2	136047	2	SS5_PROX	SS5_PROX:INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.54977	3.79896	5.04815	0.0640389	0.0572698	0.184676	0.154343
chr2	46302232	46302331	784690	0	+	0.343434	(0.33,0.36]	chr2	89746	39	INTRON	INTRON	EPAS1	ENSG00000116016.14	ENST00000460015.1:ENST00000449347.5:ENST00000263734.5:ENST00000467888.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	64	2	2.09481	3.79842	5.50203	0.0702974	0.0265895	0.195709	0.111433
chr6	2192673	2192773	3084810	0	-	0.62	(0.58,1]	chr6	299526	168	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.43115	3.79784	5.16453	0.0309513	0.0249802	0.127822	0.10758
chr10	75700762	75700862	4523171	0	+	0.5	(0.485,0.523]	chr10	432271	528	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	291	2	2.97868	3.797785	4.61689	0.00288007	0.00238919	0.0341432	0.0260928
chr1	2231210	2231307	4522	0	+	0.649485	(0.58,1]	chr1	1044	11	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	2	106	2	3.63877	3.79725	3.95573	0.0127766	0.00191878	0.0769397	0.0223755
chr1	54861909	54862009	490867	0	-	0.47	(0.45,0.485]	chr1	58440	55	INTRON	INTRON	DHCR24	ENSG00000116133.13	ENST00000371269.9:ENST00000647912.1:ENST00000535035.6:ENST00000649769.1:ENST00000648712.1:ENST00000648728.1:ENST00000436604.2:ENST00000647585.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	2.75654	3.7970450000000002	4.83755	0.06646	0.0419966	0.162385	0.149115
chr1	1026742	1026842	982	0	+	0.61	(0.58,1]	chr1	166	39	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.7038	3.796935	4.89007	0.0648563	0.00872525	0.162218	0.0612699
chr12	132544316	132544415	5353059	0	+	0.575758	(0.523,0.58]	chr12	523670	160	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.80981	3.796825	4.78384	0.0663135	0.0364868	0.162385	0.139793
chr16	83921956	83922056	6513144	0	+	0.56	(0.523,0.58]	chr16	646141	66	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.80981	3.796825	4.78384	0.0663135	0.0364868	0.162385	0.139793
chr17	72555030	72555130	6963861	0	-	0.47	(0.45,0.485]	chr17	710389	206	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	4	235	2	3.04949	3.796825	4.54416	0.0247662	1.55084e-4	0.10758	0.00377474
chr17	38742617	38742715	6895601	0	-	0.540816	(0.523,0.58]	chr17	700401	18	INTRON	INTRON	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000611883.4:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.74768	3.796685	4.84569	0.0610722	0.0411359	0.158506	0.147756
chr7	29969391	29969479	3564651	0	-	0.318182	(0.29,0.33]	chr7	343998	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SCRN1	ENSG00000136193.17	ENST00000426154.5:ENST00000242059.10:ENST00000425819.6:ENST00000434476.6:ENST00000421434.5:ENST00000494620.1:ENST00000438497.5:ENST00000409570.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.51537	3.796065	5.07676	0.0639396	0.0412683	0.184676	0.136301
chr9	123710552	123710652	4399693	0	-	0.31	(0.29,0.33]	chr9	419704	334	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1:ENST00000474676.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.51537	3.796065	5.07676	0.0639396	0.0412683	0.184676	0.136301
chr6	158574121	158574220	3064037	0	+	0.272727	[0,0.29]	chr6	297693	2	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.59271	3.7959750000000003	4.99924	0.0532832	0.0347661	0.167062	0.126529
chr17	965302	965402	6826488	0	-	0.46	(0.45,0.485]	chr17	690074	320	INTRON	INTRON	NXN	ENSG00000167693.17	ENST00000336868.8:ENST00000575171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	2.81608	3.795895	4.77571	0.0719884	0.0375071	0.168159	0.139823
chr2	239279478	239279578	1391503	0	-	0.58	(0.523,0.58]	chr2	148740	279	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	46	2	3.08569	3.7958100000000004	4.50593	0.094303	0.020773	0.188571	0.102713
chr16	72973373	72973464	6627141	0	-	0.472527	(0.45,0.485]	chr16	663546	1	EXON_MRNA	EXON_MRNA:INTRON	ZFHX3:ENSG00000279757	ENSG00000140836.17:ENSG00000279757.1	ENST00000641206.2:ENST00000397992.5:ENST00000268489.10:ENST00000623805.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC	1	46	2	2.69444	3.795645	4.89685	0.0614781	0.0471378	0.158506	0.156915
chr2	75517612	75517712	1194349	0	-	0.46	(0.45,0.485]	chr2	129851	4	SS5_PROX	SS5_PROX:INTRON	EVA1A	ENSG00000115363.14	ENST00000485891.1:ENST00000490746.5:ENST00000233712.5:ENST00000393913.8:ENST00000410113.5:ENST00000410010.1:ENST00000410071.5:ENST00000432649.5:ENST00000452003.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.69444	3.795645	4.89685	0.0614781	0.0471378	0.158506	0.156915
chr14	30920905	30921005	5950937	0	-	0.38	(0.36,0.39]	chr14	583071	14	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000366206.2:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	441	2	3.61819	3.79525	3.97231	0.00552047	5.2852e-4	0.0491108	0.0090778
chr3	51663320	51663420	1472173	0	+	0.48	(0.45,0.485]	chr3	157988	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_PROX:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000487093.5:ENST00000432863.1:ENST00000461680.1:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	62	2	2.3351	3.7950999999999997	5.2551	0.0438295	0.0373953	0.153511	0.130656
chr16	85394634	85394734	6517017	0	+	0.59	(0.58,1]	chr16	646391	353	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.09824	3.7946999999999997	4.49116	0.0341637	0.0207449	0.125129	0.102713
chr7	4717149	4717249	3309690	0	+	0.63	(0.58,1]	chr7	320808	339	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.09824	3.7946999999999997	4.49116	0.0341637	0.0207449	0.125129	0.102713
chr10	103339869	103339969	4755820	0	-	0.56	(0.523,0.58]	chr10	454656	1	SS3_PROX	SS3_PROX:INTRON	PCGF6	ENSG00000156374.16	ENST00000369847.4:ENST00000337211.8:ENST00000490296.1:ENST00000647574.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	2.46839	3.7944449999999996	5.1205	0.0683019	0.0416463	0.193274	0.136301
chr13	98366430	98366529	5635914	0	+	0.575758	(0.523,0.58]	chr13	553532	6	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5:ENST00000595817.5:ENST00000595380.5:ENST00000596467.5:ENST00000600032.5:ENST00000601853.5:ENST00000596613.5:ENST00000599040.5:ENST00000602263.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	46	2	2.46839	3.7944449999999996	5.1205	0.0683019	0.0416463	0.193274	0.136301
chr17	55323718	55323816	6757707	0	+	0.540816	(0.523,0.58]	chr17	681735	30	UTR3	UTR3:EXON_MRNA	HLF	ENSG00000108924.14	ENST00000226067.10	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.46839	3.7944449999999996	5.1205	0.0683019	0.0416463	0.193274	0.136301
chr6	34404661	34404761	3123956	0	-	0.57	(0.523,0.58]	chr6	304670	121	INTRON	INTRON	RPS10-NUDT3	ENSG00000270800.3	ENST00000639725.1:ENST00000639877.1:ENST00000605528.2	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.46839	3.7944449999999996	5.1205	0.0683019	0.0416463	0.193274	0.136301
chr16	50612553	50612653	6452053	0	+	0.46	(0.45,0.485]	chr16	639908	38	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	62	2	2.28891	3.79432	5.29973	0.0479351	0.035042	0.159092	0.12704
chr14	105442825	105442924	5927458	0	+	0.565657	(0.523,0.58]	chr14	580172	37	INTRON	INTRON	MTA1	ENSG00000182979.18	ENST00000435036.6:ENST00000331320.12:ENST00000406191.5:ENST00000405646.5:ENST00000438610.5:ENST00000551236.5:ENST00000481012.5:ENST00000424723.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.68276	3.79388	4.905	0.0563605	0.0464998	0.156036	0.154188
chr4	715239	715339	1993780	0	+	0.57	(0.523,0.58]	chr4	203088	89	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	2.68276	3.79388	4.905	0.0563605	0.0464998	0.156036	0.154188
chr16	81543981	81544081	6508733	0	+	0.44	(0.419,0.45]	chr16	645911	481	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	4	248	2	3.44327	3.79387	4.14447	0.015347	6.76387e-4	0.0849828	0.0108218
chr16	85442513	85442613	6517496	0	+	0.52	(0.485,0.523]	chr16	646391	832	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.25002	3.79387	4.33772	0.03818	0.033374	0.140822	0.124113
chrX	31284847	31284947	8004249	0	-	0.47	(0.45,0.485]	chrX	836912	180	INTRON	INTRON	DMD	ENSG00000198947.18	ENST00000358062.6:ENST00000357033.9:ENST00000619831.5:ENST00000378677.6:ENST00000359836.5:ENST00000378707.7:ENST00000541735.5:ENST00000343523.7:ENST00000684130.1:ENST00000680961.1:ENST00000682238.1:ENST00000683675.1:ENST00000620040.5:ENST00000474231.5:ENST00000683957.1:ENST00000681646.1:ENST00000634315.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	2.76944	3.7935799999999995	4.81772	0.0716626	0.0167663	0.168159	0.0917029
chr7	66224539	66224639	3379741	0	+	0.55	(0.523,0.58]	chr7	326234	25	INTRON	INTRON	TPST1	ENSG00000169902.15	ENST00000442120.1:ENST00000304842.6:ENST00000480281.5:ENST00000649664.1:ENST00000451388.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	2.6197	3.79342	4.96714	0.0853454	0.0108948	0.181766	0.0706366
chr16	85234865	85234965	6515417	0	+	0.64	(0.58,1]	chr16	646377	71	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	60	2	3.29173	3.7931349999999995	4.29454	0.0305531	0.0243429	0.126768	0.106588
chr16	81613622	81613721	6509432	0	+	0.383838	(0.36,0.39]	chr16	645921	27	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	48	2	2.95428	3.79299	4.6317	0.0950937	0.0305895	0.189021	0.126768
chr8	120684201	120684300	4058744	0	-	0.383838	(0.36,0.39]	chr8	386601	288	INTRON	INTRON	SNTB1	ENSG00000172164.15	ENST00000395601.7:ENST00000517992.2:ENST00000648490.1:ENST00000519177.5:ENST00000519298.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	188	2	3.31404	3.7923	4.27056	0.0343432	4.37747e-4	0.12575	0.00796534
chr2	101822627	101822727	861885	0	+	0.47	(0.45,0.485]	chr2	97540	226	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5:ENST00000627726.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.87326	3.79218	4.7111	0.0781398	0.033576	0.175203	0.133139
chr6	170401060	170401159	3076590	0	+	0.474747	(0.45,0.485]	chr6	299192	51	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.87326	3.79218	4.7111	0.0781398	0.033576	0.175203	0.133139
chr11	102177137	102177236	4930416	0	+	0.444444	(0.419,0.45]	chr11	475101	142	INTRON	INTRON	YAP1	ENSG00000137693.14	ENST00000282441.10:ENST00000537274.5:ENST00000345877.6:ENST00000615667.4:ENST00000526343.5:ENST00000531439.5:ENST00000629586.2:ENST00000524575.5:ENST00000526594.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	71	2	2.89397	3.7921500000000004	4.69033	0.0958674	0.0151064	0.189038	0.085778
chr18	80186635	80186734	7183146	0	-	0.444444	(0.419,0.45]	chr18	730364	31	INTRON	INTRON	PARD6G	ENSG00000178184.16	ENST00000353265.8:ENST00000470488.2:ENST00000463384.1	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	2.30548	3.79208	5.27868	0.04996	0.0457732	0.161395	0.142336
chr13	98537196	98537296	5747893	0	-	0.61	(0.58,1]	chr13	563357	153	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.63525	3.7920350000000003	4.94882	0.0459151	0.0354433	0.154743	0.127188
chr19	1171731	1171830	7305770	0	-	0.686869	(0.58,1]	chr19	753058	27	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.63525	3.7920350000000003	4.94882	0.0459151	0.0354433	0.154743	0.127188
chr9	124489782	124489882	4402620	0	-	0.61	(0.58,1]	chr9	419805	64	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.63525	3.7920350000000003	4.94882	0.0459151	0.0354433	0.154743	0.127188
chr7	111290592	111290692	3684970	0	-	0.43	(0.419,0.45]	chr7	354615	3267	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	65	2	2.26209	3.79202	5.32195	0.0541225	0.0431627	0.167824	0.138403
chr10	79166927	79167027	4533026	0	+	0.68	(0.58,1]	chr10	432438	44	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.56085	3.791995	5.02314	0.0803939	0.00638322	0.177452	0.0501889
chr17	17727557	17727657	6689311	0	+	0.59	(0.58,1]	chr17	671344	30	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.56085	3.791995	5.02314	0.0803939	0.00638322	0.177452	0.0501889
chr2	54655413	54655511	800306	0	+	0.459184	(0.45,0.485]	chr2	90947	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000333896.5:ENST00000496323.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	2.62955	3.791675	4.9538	0.0569772	0.0530416	0.167062	0.154343
chr4	1943585	1943684	1996728	0	+	0.484848	(0.45,0.485]	chr4	203544	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000398261.6:ENST00000382891.9:ENST00000353275.9:ENST00000382892.6:ENST00000382895.7:ENST00000312087.10:ENST00000503128.5:ENST00000677559.1:ENST00000678714.1:ENST00000511904.1:ENST00000513726.5:ENST00000678128.1:ENST00000482415.6:ENST00000514329.5:ENST00000502425.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	2.62955	3.791675	4.9538	0.0569772	0.0530416	0.167062	0.154343
chr18	58047510	58047610	7071475	0	+	0.42	(0.419,0.45]	chr18	721086	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5:ENST00000588516.5:ENST00000456986.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	316	2	3.58987	3.79167	3.99347	0.00851561	0.00101666	0.0619208	0.014335
chr2	62710694	62710794	814004	0	+	0.35	(0.33,0.36]	chr2	92078	30	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000449820.5:ENST00000426940.5:ENST00000413434.5:ENST00000405482.5:ENST00000427809.5:ENST00000494958.1:ENST00000472809.5:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	48	2	3.08687	3.791295	4.49572	0.103264	0.0227116	0.197541	0.108285
chr10	75889024	75889124	4525059	0	+	0.38	(0.36,0.39]	chr10	432292	51	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	64	2	2.33887	3.79102	5.24317	0.0459241	0.0433841	0.154743	0.138813
chr22	38291362	38291458	7810674	0	-	0.697917	(0.58,1]	chr22	818864	8	UTR3	UTR3:EXON_MRNA	CSNK1E	ENSG00000213923.13	ENST00000359867.7:ENST00000396832.6	protein_coding	protein_coding	protein_coding	protein_coding	8	423	2	3.34003	3.790845	4.24166	0.00107594	6.43601e-4	0.0148938	0.0148869
chr21	37391095	37391195	7619212	0	+	0.42	(0.419,0.45]	chr21	796015	156	INTRON	INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1:ENST00000643551.1:ENST00000426672.6:ENST00000398960.7	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.7644	3.790555	4.81671	0.08258	0.0447981	0.179396	0.154539
chr3	65740028	65740128	1812875	0	-	0.43	(0.419,0.45]	chr3	187296	195	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000470990.5:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	48	2	2.7644	3.790555	4.81671	0.08258	0.0447981	0.179396	0.154539
chr8	133295200	133295286	4084278	0	-	0.55814	(0.523,0.58]	chr8	388360	1	INTRON	INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	126	2	3.45038	3.790495	4.13061	0.0533354	0.0114883	0.167062	0.0725944
chr10	102652166	102652265	4576546	0	+	0.50505	(0.485,0.523]	chr10	437284	25	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1:ENST00000487927.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	3.07448	3.7904099999999996	4.50634	0.0939553	0.0214987	0.188571	0.10537
chr16	50575410	50575510	6451681	0	+	0.5	(0.485,0.523]	chr16	639902	168	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	3.07448	3.7904099999999996	4.50634	0.0939553	0.0214987	0.188571	0.10537
chr16	22424113	22424213	6566805	0	-	0.54	(0.523,0.58]	chr16	655121	15	INTRON	INTRON	CDR2:RRN3P3	ENSG00000140743.8:ENSG00000257122.5	ENST00000564542.5:ENST00000563573.5:ENST00000569045.1:ENST00000551766.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	2	126	2	2.9513	3.790145	4.62899	0.0531089	3.98321e-4	0.149478	0.00743377
chr19	33422035	33422134	7365058	0	-	0.616162	(0.58,1]	chr19	763415	80	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000590731.6:ENST00000609145.5:ENST00000588719.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	67	2	2.1424	3.7899599999999998	5.43752	0.0374477	0.0156166	0.139793	0.0849828
chr6	41723825	41723924	3132632	0	-	0.59596	(0.58,1]	chr6	305485	2	INTRON	INTRON	TFEB	ENSG00000112561.19	ENST00000358871.6:ENST00000373033.6:ENST00000230323.8:ENST00000677531.1:ENST00000403298.9:ENST00000420312.6:ENST00000424495.2:ENST00000678831.1:ENST00000419396.6:ENST00000678871.1:ENST00000394283.5:ENST00000679237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	67	2	2.1424	3.7899599999999998	5.43752	0.0374477	0.0156166	0.139793	0.0849828
chr12	787754	787854	5148978	0	+	0.39	(0.36,0.39]	chr12	500572	66	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.59031	3.789865	4.98942	0.0956255	0.0141427	0.189038	0.0833845
chr2	235047607	235047706	1062451	0	+	0.656566	(0.58,1]	chr2	115634	40	INTRON	INTRON	SH3BP4	ENSG00000130147.16	ENST00000392011.7:ENST00000409212.5:ENST00000344528.8	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.27185	3.7896600000000005	5.30747	0.0433824	0.0196049	0.152119	0.0955413
chr1	93540047	93540146	186545	0	+	0.484848	(0.45,0.485]	chr1	20214	32	INTRON	INTRON	FNBP1L	ENSG00000137942.18	ENST00000271234.13:ENST00000260506.12:ENST00000370253.6:ENST00000424449.2	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	2.90749	3.78944	4.67139	0.0588897	0.0223378	0.15607	0.108193
chr11	68422391	68422491	4883194	0	+	0.57	(0.523,0.58]	chr11	470622	55	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	55	2	2.48975	3.789285	5.08882	0.101574	0.00834774	0.196431	0.0598672
chr12	122084364	122084464	5343432	0	+	0.58	(0.523,0.58]	chr12	521864	47	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.48975	3.789285	5.08882	0.101574	0.00834774	0.196431	0.0598672
chr6	131836685	131836784	3008308	0	+	0.343434	(0.33,0.36]	chr6	294175	102	INTRON	INTRON	ENPP1	ENSG00000197594.14	ENST00000486853.1:ENST00000647893.1:ENST00000513998.5:ENST00000650507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	2.51922	3.7892099999999997	5.0592	0.0659899	0.0504445	0.189025	0.148216
chr17	72550241	72550341	6963813	0	-	0.57	(0.523,0.58]	chr17	710389	158	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	45	2	2.92656	3.789065	4.65157	0.0787008	0.0289226	0.175203	0.124
chr8	22390941	22391040	3770258	0	+	0.575758	(0.523,0.58]	chr8	362727	111	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.92656	3.789065	4.65157	0.0787008	0.0289226	0.175203	0.124
chr16	16037896	16037995	6406888	0	+	0.515152	(0.485,0.523]	chr16	633041	9	INTRON	INTRON	ABCC1	ENSG00000103222.20	ENST00000574224.2:ENST00000678422.1:ENST00000677164.1:ENST00000399408.7:ENST00000572882.3:ENST00000399410.8:ENST00000679043.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	2.85817	3.7889049999999997	4.71964	0.0718646	0.0334631	0.168159	0.133139
chr20	2836905	2836997	7514388	0	-	0.5	(0.485,0.523]	chr20	784415	2	INTRON	INTRON	PCED1A	ENSG00000132635.17	ENST00000356872.7:ENST00000360652.7:ENST00000487501.2:ENST00000474714.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	2.85817	3.7889049999999997	4.71964	0.0718646	0.0334631	0.168159	0.133139
chr12	15780652	15780727	5380407	0	-	0.44	(0.419,0.45]	chr12	527516	2	UTR5	UTR5:EXON_MRNA:INTRON	EPS8	ENSG00000151491.14	ENST00000281172.10:ENST00000543523.5:ENST00000543468.5:ENST00000644374.1:ENST00000646918.1:ENST00000645775.1:ENST00000642939.1:ENST00000646828.1:ENST00000647224.1:ENST00000642278.1:ENST00000646123.1:ENST00000647087.1:ENST00000536956.5:ENST00000535752.5:ENST00000536793.5:ENST00000543363.5:ENST00000544064.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	79	2	2.21336	3.7886550000000003	5.36395	0.0409409	0.0407485	0.147408	0.135868
chr16	84734790	84734888	6514177	0	+	0.5	(0.485,0.523]	chr16	646283	9	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	2.67159	3.7885050000000002	4.90542	0.0561086	0.0478226	0.1588	0.154188
chr4	716136	716236	1993789	0	+	0.58	(0.523,0.58]	chr4	203088	98	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	45	2	2.61478	3.7883750000000003	4.96197	0.052707	0.0521137	0.167062	0.148503
chr16	20684575	20684675	6416304	0	+	0.34	(0.33,0.36]	chr16	634386	25	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	117	2	2.23516	3.7879899999999997	5.34082	0.0338211	0.0208362	0.124319	0.102783
chr1	26927664	26927764	70131	0	+	0.43	(0.419,0.45]	chr1	7863	31	INTRON	INTRON	NUDC	ENSG00000090273.14	ENST00000435827.6:ENST00000321265.10:ENST00000452707.1	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	2.17119	3.78798	5.40477	0.0637569	0.0385125	0.184651	0.131324
chr8	9773705	9773802	3754915	0	+	0.278351	[0,0.29]	chr8	360888	9	INTRON	INTRON	TNKS	ENSG00000173273.16	ENST00000310430.11:ENST00000518281.5:ENST00000517770.1	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.53067	3.7879250000000004	5.04518	0.0856331	0.00813784	0.181766	0.0588114
chr20	63211969	63212069	7585884	0	-	0.43	(0.419,0.45]	chr20	792947	78	INTRON	INTRON	YTHDF1	ENSG00000149658.18	ENST00000370339.8:ENST00000370334.4	protein_coding	protein_coding	protein_coding	protein_coding	4	217	2	3.42214	3.7872900000000005	4.15244	0.00958462	0.0025393	0.0659196	0.0271978
chr1	61171824	61171924	147000	0	+	0.42	(0.419,0.45]	chr1	17147	389	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	2.81936	3.7871300000000003	4.7549	0.0888907	0.0405181	0.183874	0.145945
chr2	101727332	101727432	860929	0	+	0.27	[0,0.29]	chr2	97528	284	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	3.031	3.786875	4.54275	0.0681032	0.0223108	0.164448	0.108193
chr14	31165298	31165398	5952709	0	-	0.42	(0.419,0.45]	chr14	583296	76	INTRON	INTRON	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000691390.1:ENST00000553957.6:ENST00000687002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	2.58571	3.78669	4.98767	0.0669167	0.0613171	0.18013	0.16272
chr2	239336692	239336792	1392077	0	-	0.43	(0.419,0.45]	chr2	148752	122	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	48	2	2.58571	3.78669	4.98767	0.0669167	0.0613171	0.18013	0.16272
chr8	118027529	118027629	4048898	0	-	0.43	(0.419,0.45]	chr8	386022	104	INTRON	INTRON	EXT1	ENSG00000182197.13	ENST00000378204.7:ENST00000437196.1:ENST00000436216.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.58571	3.78669	4.98767	0.0669167	0.0613171	0.18013	0.16272
chr1	61134327	61134427	146625	0	+	0.37	(0.36,0.39]	chr1	17147	14	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	242	2	3.17405	3.7865900000000003	4.39913	0.0220785	3.0441e-4	0.101608	0.00614402
chr2	7047270	7047370	712746	0	+	0.39	(0.36,0.39]	chr2	83322	32	INTRON	INTRON	RNF144A	ENSG00000151692.15	ENST00000432850.1	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.80898	3.78644	4.7639	0.0811309	0.0175699	0.177951	0.0933029
chr2	235522624	235522724	1062822	0	+	0.56	(0.523,0.58]	chr2	115651	274	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	124	2	3.75634	3.786335	3.8163299999999998	0.012872	0.00434055	0.0772995	0.0390182
chrX	74244689	74244788	8068712	0	-	0.313131	(0.29,0.33]	chrX	841746	19	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1	lncRNA	lncRNA	lncRNA	lncRNA	1	45	2	2.71956	3.786205	4.85285	0.0567079	0.0442313	0.154343	0.153511
chr19	45177192	45177292	7386995	0	-	0.57	(0.523,0.58]	chr19	766996	116	INTRON	INTRON	TRAPPC6A	ENSG00000007255.10	ENST00000006275.8:ENST00000588062.5:ENST00000585934.1:ENST00000592647.1:ENST00000587818.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	64	2	3.1364	3.786185	4.43597	0.0400336	0.0313935	0.134064	0.127822
chr4	73099310	73099407	2248371	0	-	0.639175	(0.58,1]	chr4	226800	4	INTRON	INTRON	ANKRD17	ENSG00000132466.20	ENST00000358602.9:ENST00000558247.5:ENST00000330838.10:ENST00000509867.6:ENST00000513908.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	67	2	2.05413	3.78613	5.51813	0.0452423	0.013519	0.154539	0.0792526
chr16	89302630	89302728	6659835	0	-	0.357143	(0.33,0.36]	chr16	666658	6	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	181	2	3.32018	3.7860899999999997	4.252	0.0319184	4.16469e-4	0.121593	0.0076938
chr4	2812777	2812877	2000233	0	+	0.56	(0.523,0.58]	chr4	203926	3	SS5_PROX	SS5_PROX:INTRON	SH3BP2	ENSG00000087266.17	ENST00000503219.5:ENST00000512131.5:ENST00000503393.8:ENST00000510074.5:ENST00000511237.5:ENST00000504294.5:ENST00000508385.5:ENST00000513020.5:ENST00000511663.5:ENST00000512014.5:ENST00000513095.5:ENST00000502260.5:ENST00000435136.8:ENST00000511185.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	63	2	2.78812	3.78598	4.78384	0.0663135	0.0160129	0.162385	0.0894586
chr18	48723276	48723375	7058507	0	+	0.474747	(0.45,0.485]	chr18	720341	112	INTRON	INTRON	CTIF	ENSG00000134030.14	ENST00000256413.8:ENST00000382998.8:ENST00000587769.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.92826	3.78586	4.64346	0.0850039	0.0301249	0.181766	0.126768
chr19	35004823	35004922	7244908	0	+	0.545455	(0.523,0.58]	chr19	742073	16	INTRON	INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	87	2	2.66944	3.78583	4.90222	0.0437689	0.0125132	0.139708	0.0765738
chr7	29203782	29203882	3334381	0	+	0.36	(0.33,0.36]	chr7	322843	54	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5:ENST00000222792.11:ENST00000409350.5:ENST00000409964.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	77	2	2.31852	3.7857199999999995	5.25292	0.0384256	0.0312852	0.131324	0.127822
chr7	47362487	47362587	3587416	0	-	0.43	(0.419,0.45]	chr7	346030	158	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	4	217	2	3.55249	3.7855300000000005	4.01857	0.0119937	0.00180836	0.0743424	0.0215456
chr8	120809672	120809772	4060000	0	-	0.41	(0.39,0.419]	chr8	386607	1154	INTRON	INTRON	SNTB1	ENSG00000172164.15	ENST00000395601.7:ENST00000517992.2:ENST00000648490.1:ENST00000519177.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	240	2	3.32511	3.7854900000000002	4.24587	0.0173749	4.71713e-4	0.0901374	0.00837004
chr10	28564825	28564925	4469733	0	+	0.37	(0.36,0.39]	chr10	427649	264	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	64	2	2.15686	3.78538	5.4139	0.0642245	0.0340874	0.184676	0.125059
chr2	75519891	75519990	1194376	0	-	0.373737	(0.36,0.39]	chr2	129863	13	INTRON	INTRON	EVA1A	ENSG00000115363.14	ENST00000485891.1:ENST00000490746.5:ENST00000233712.5:ENST00000393913.8:ENST00000410113.5:ENST00000410071.5:ENST00000432649.5:ENST00000486696.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	64	2	2.15686	3.78538	5.4139	0.0642245	0.0340874	0.184676	0.125059
chr6	16760300	16760399	3104457	0	-	0.808081	(0.58,1]	chr6	300921	3	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000473388.6:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1:ENST00000467008.5:ENST00000498374.1:ENST00000492857.1:ENST00000479680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	105	2	3.61485	3.78529	3.95573	0.0133763	0.00191878	0.0790342	0.0223755
chr16	85434117	85434217	6517412	0	+	0.52	(0.485,0.523]	chr16	646391	748	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.04904	3.7852300000000003	4.52142	0.0457169	0.0273555	0.142336	0.119337
chr11	65422872	65422972	4871570	0	+	0.6	(0.58,1]	chr11	468177	2	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000612303.2:ENST00000670617.1	lncRNA	lncRNA	lncRNA	lncRNA	181	8110	2	3.67079	3.78473	3.89867	4.23976e-4	4.23559e-5	0.0117967	0.00145737
chr8	38767696	38767796	3802232	0	+	0.43	(0.419,0.45]	chr8	365828	99	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	217	2	3.36651	3.7845999999999997	4.20269	0.00880292	0.00292937	0.063099	0.0298918
chr11	70791546	70791646	5062197	0	-	0.45	(0.419,0.45]	chr11	492701	737	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	61	2	2.65059	3.78454	4.91849	0.0917577	0.0174488	0.188571	0.0928044
chr20	36313204	36313304	7469119	0	+	0.59	(0.58,1]	chr20	777805	63	INTRON	INTRON	DLGAP4	ENSG00000080845.19	ENST00000373913.7:ENST00000339266.10	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.6194	3.78411	4.94882	0.0354433	0.0202577	0.127188	0.102015
chr15	25015514	25015612	6064008	0	+	0.428571	(0.419,0.45]	chr15	595414	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	3	78	2	2.01056	3.783975	5.55739	0.0603226	0.0310506	0.178428	0.119758
chr3	61811182	61811281	1489113	0	+	0.454545	(0.45,0.485]	chr3	160092	399	INTRON	INTRON	PTPRG	ENSG00000144724.20	ENST00000474889.6:ENST00000295874.14	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	2.73028	3.7839150000000004	4.83755	0.06646	0.0192493	0.162385	0.0994526
chr16	85230265	85230365	6515371	0	+	0.45	(0.419,0.45]	chr16	646377	25	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	64	2	2.85295	3.783725	4.7145	0.0703179	0.0256236	0.168159	0.115966
chr10	75474409	75474509	4520902	0	+	0.51	(0.485,0.523]	chr10	432249	228	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.91537	3.7836749999999997	4.65198	0.0783889	0.0298565	0.175203	0.126732
chr16	8905431	8905531	6546459	0	-	0.49	(0.485,0.523]	chr16	651573	1	SS3_PROX	SS3_PROX:INTRON	USP7	ENSG00000187555.16	ENST00000673704.1:ENST00000344836.9:ENST00000563961.5:ENST00000381886.8:ENST00000565455.5:ENST00000563085.5:ENST00000542333.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.60361	3.7830000000000004	4.96239	0.0541523	0.0518747	0.167824	0.148503
chr11	96057302	96057401	5110708	0	-	0.383838	(0.36,0.39]	chr11	496560	652	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6:ENST00000618849.1	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.70325	3.78287	4.86249	0.0824711	0.0181775	0.179396	0.0955836
chr10	79218873	79218973	4533550	0	+	0.57	(0.523,0.58]	chr10	432457	22	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	4	197	2	2.75859	3.78283	4.80707	0.0274409	2.35254e-4	0.112665	0.00508037
chr10	63344082	63344182	4698860	0	-	0.43	(0.419,0.45]	chr10	447731	750	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	2.57738	3.7825249999999997	4.98767	0.0669167	0.0294759	0.16272	0.125644
chrX	133829403	133829503	8114461	0	-	0.36	(0.33,0.36]	chrX	845523	749	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	64	2	2.61341	3.78252	4.95163	0.0583482	0.0257767	0.155373	0.116361
chr3	10888392	10888492	1408416	0	+	0.52	(0.485,0.523]	chr3	151278	129	INTRON	INTRON	SLC6A11	ENSG00000132164.10	ENST00000254488.7	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	3.05773	3.7820349999999996	4.50634	0.0939553	0.00856934	0.188571	0.0612055
chrX	47237678	47237777	7877983	0	+	0.343434	(0.33,0.36]	chrX	825761	34	INTRON	INTRON	USP11	ENSG00000102226.10	ENST00000218348.7:ENST00000478596.5:ENST00000377107.7:ENST00000469080.5:ENST00000377080.7:ENST00000377078.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	57	2	2.56404	3.7819450000000003	4.99985	0.0954498	0.0127452	0.189038	0.0773423
chr15	56241624	56241724	6275472	0	-	0.37	(0.36,0.39]	chr15	618444	485	INTRON	INTRON	RFX7	ENSG00000181827.16	ENST00000674082.1:ENST00000559447.8:ENST00000673997.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.73813	3.7819249999999998	4.82572	0.0751666	0.0459393	0.172839	0.154743
chr10	103687440	103687539	4756970	0	-	0.545455	(0.523,0.58]	chr10	454779	94	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	55	2	2.53438	3.7818250000000004	5.02927	0.0957531	0.0095202	0.189038	0.0650078
chr4	3365390	3365490	2005090	0	+	0.57	(0.523,0.58]	chr4	204663	220	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	119	2	3.35121	3.781795	4.21238	0.0284134	0.0013008	0.114906	0.0171237
chr5	176460398	176460498	2595938	0	+	0.31	(0.29,0.33]	chr5	257577	63	INTRON	INTRON	FAF2	ENSG00000113194.13	ENST00000510730.5:ENST00000261942.7:ENST00000510446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	2.73761	3.7815250000000002	4.82544	0.0704177	0.0156279	0.168159	0.0877396
chr7	79815235	79815335	3403470	0	+	0.39	(0.36,0.39]	chr7	328702	30	INTRON	INTRON	GNAI1	ENSG00000127955.17	ENST00000650351.1:ENST00000649225.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	136	2	3.68627	3.781325	3.87638	0.0139008	0.00632798	0.0805897	0.0501889
chr1	17679280	17679380	55004	0	+	0.57	(0.523,0.58]	chr1	5603	143	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	60	2	2.39285	3.78127	5.16969	0.0387762	0.0376513	0.140049	0.131324
chr12	109905293	109905390	5324684	0	+	0.546392	(0.523,0.58]	chr12	519063	1	INTRON	INTRON	TCHP	ENSG00000139437.18	ENST00000544838.5:ENST00000405876.9:ENST00000312777.9:ENST00000536408.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.98158	3.78108	4.58058	0.0860403	0.0258432	0.181766	0.116361
chr22	32803720	32803820	7717646	0	+	0.59	(0.58,1]	chr22	807776	12	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	3.16566	3.78093	4.3962	0.0304114	0.0250928	0.11845	0.114418
chr9	134349314	134349414	4260916	0	+	0.74	(0.58,1]	chr9	406311	223	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	57	2	3.16566	3.78093	4.3962	0.0304114	0.0250928	0.11845	0.114418
chr1	31937886	31937986	437555	0	-	0.81	(0.58,1]	chr1	52125	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000468531.1:ENST00000526960.1:ENST00000494444.2:ENST00000529477.5:ENST00000533408.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.55596	3.7809049999999997	5.00585	0.0534085	0.0323732	0.167062	0.121593
chr11	61759135	61759235	4862560	0	+	0.67	(0.58,1]	chr11	466004	33	INTRON	INTRON	MYRF	ENSG00000124920.14	ENST00000278836.10:ENST00000537766.1:ENST00000265460.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	2.55596	3.7809049999999997	5.00585	0.0534085	0.0323732	0.167062	0.121593
chr19	1173123	1173223	7305784	0	-	0.66	(0.58,1]	chr19	753058	41	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.55596	3.7809049999999997	5.00585	0.0534085	0.0323732	0.167062	0.121593
chr2	89555599	89555699	1216648	0	-	0.59	(0.58,1]	chr2	131065	6	INTRON	INTRON	ENSG00000283196	ENSG00000283196.2	ENST00000636531.1:ENST00000635968.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	42	2	2.55596	3.7809049999999997	5.00585	0.0534085	0.0323732	0.167062	0.121593
chr20	64269203	64269302	7511204	0	+	0.50505	(0.485,0.523]	chr20	783907	8	INTRON	INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609818.1	protein_coding	protein_coding	protein_coding	protein_coding	1	66	2	3.22297	3.780345	4.33772	0.03818	0.0348463	0.140822	0.126697
chr8	28139986	28140086	3782521	0	+	0.4	(0.39,0.419]	chr8	364459	17	INTRON	INTRON	ELP3	ENSG00000134014.17	ENST00000521015.5:ENST00000380353.8:ENST00000537665.2:ENST00000523687.5:ENST00000524103.5:ENST00000256398.13:ENST00000518112.5:ENST00000519261.5:ENST00000520110.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	47	2	2.7362	3.780295	4.82439	0.0762206	0.0461646	0.174484	0.155334
chr3	152296609	152296709	1598660	0	+	0.41	(0.39,0.419]	chr3	168969	265	INTRON	INTRON	MBNL1	ENSG00000152601.18	ENST00000477171.1:ENST00000282486.10:ENST00000282488.11:ENST00000355460.6:ENST00000461436.1:ENST00000495875.6:ENST00000324210.10:ENST00000493459.5:ENST00000459747.1:ENST00000460591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.67669	3.780175	4.88366	0.0707789	0.051368	0.168159	0.165482
chr6	158233602	158233702	3060851	0	+	0.53	(0.523,0.58]	chr6	297572	9	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	45	2	2.54344	3.780105	5.01677	0.0599121	0.0482765	0.177269	0.144601
chr6	16471233	16471333	3101547	0	-	0.36	(0.33,0.36]	chr6	300850	378	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.98982	3.780085	4.57035	0.0945416	0.027642	0.188571	0.120359
chr6	41058023	41058122	3130841	0	-	0.484848	(0.45,0.485]	chr6	305368	53	INTRON	INTRON	OARD1	ENSG00000124596.17	ENST00000482853.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	126	2	3.73584	3.7798100000000003	3.82378	0.015867	0.0039984	0.0859576	0.0370532
chr16	69440752	69440852	6483759	0	+	0.26	[0,0.29]	chr16	643951	100	INTRON	INTRON	CYB5B	ENSG00000103018.18	ENST00000686649.1:ENST00000684784.1:ENST00000691260.1:ENST00000689149.1:ENST00000692677.1:ENST00000686167.1:ENST00000568342.3:ENST00000307892.13:ENST00000688840.1:ENST00000515314.7:ENST00000687677.1:ENST00000514123.5:ENST00000693607.1:ENST00000568237.2:ENST00000561792.7:ENST00000687780.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	2.35245	3.77979	5.20713	0.0395239	0.0248721	0.143388	0.10758
chr17	77375146	77375243	6804114	0	+	0.608247	(0.58,1]	chr17	686752	4	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1:ENST00000423034.6:ENST00000590059.5:ENST00000587514.1:ENST00000590586.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	108	2	3.72143	3.779675	3.83792	0.00865536	0.00366718	0.0623824	0.0346803
chr19	36215496	36215596	7248153	0	+	0.39	(0.36,0.39]	chr19	742978	3	SS5_PROX	SS5_PROX:INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.61656	3.77925	4.94194	0.064883	0.057025	0.173546	0.162218
chr5	176239950	176240050	2594713	0	+	0.38	(0.36,0.39]	chr5	257479	5	INTRON	INTRON	SIMC1	ENSG00000170085.18	ENST00000443967.5:ENST00000430704.6:ENST00000341199.10:ENST00000495423.1:ENST00000429602.7:ENST00000508769.1:ENST00000467472.1:ENST00000514128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	47	2	2.61656	3.77925	4.94194	0.064883	0.057025	0.173546	0.162218
chr6	138437091	138437191	3273509	0	-	0.45	(0.419,0.45]	chr6	316891	14	INTRON	INTRON	NHSL1	ENSG00000135540.12	ENST00000427025.6:ENST00000343505.10:ENST00000342260.9	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	2.46706	3.779195	5.09133	0.0586308	0.0367089	0.155565	0.139793
chr1	17672786	17672886	54939	0	+	0.58	(0.523,0.58]	chr1	5603	78	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	79	2	2.35735	3.7791949999999996	5.20104	0.0706395	0.00648051	0.168159	0.0503748
chr2	200332270	200332369	986213	0	+	0.535354	(0.523,0.58]	chr2	108291	24	INTRON	INTRON	SPATS2L	ENSG00000196141.14	ENST00000439084.5:ENST00000409718.5:ENST00000358677.9:ENST00000409988.7:ENST00000409385.5:ENST00000439395.5:ENST00000444012.5:ENST00000451764.6:ENST00000360760.9:ENST00000423749.5:ENST00000457757.5:ENST00000471601.5:ENST00000428692.5:ENST00000453663.5:ENST00000409140.8:ENST00000459656.5:ENST00000471533.5:ENST00000409397.6:ENST00000619961.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	60	2	2.43762	3.77906	5.1205	0.0416463	0.0343548	0.136301	0.134666
chr3	172220374	172220474	1629280	0	+	0.3	(0.29,0.33]	chr3	170570	332	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	61	2	2.53362	3.778785	5.02395	0.0445554	0.0287513	0.140478	0.123764
chr3	172210681	172210781	1629183	0	+	0.32	(0.29,0.33]	chr3	170570	235	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	2.89841	3.7785450000000003	4.65868	0.0735584	0.0313146	0.17026	0.127822
chr7	127724699	127724799	3468963	0	+	0.33	(0.29,0.33]	chr7	335380	29	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.89841	3.7785450000000003	4.65868	0.0735584	0.0313146	0.17026	0.127822
chr7	23381021	23381121	3552308	0	-	0.48	(0.45,0.485]	chr7	343200	180	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000492771.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000474105.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	63	2	2.65944	3.778145	4.89685	0.0614781	0.022472	0.158506	0.108193
chr5	168549690	168549790	2808526	0	-	0.38	(0.36,0.39]	chr5	275053	13	UTR3	UTR3:EXON_MRNA	PANK3	ENSG00000120137.7	ENST00000239231.7	protein_coding	protein_coding	protein_coding	protein_coding	7	397	2	3.47088	3.778	4.08512	0.00943678	2.58569e-4	0.0654583	0.00546921
chrX	20236507	20236606	7995122	0	-	0.373737	(0.36,0.39]	chrX	836359	6	INTRON	INTRON	RPS6KA3	ENSG00000177189.14	ENST00000379565.9:ENST00000643085.1:ENST00000645270.1:ENST00000643402.1:ENST00000644368.1:ENST00000647265.1:ENST00000645268.1:ENST00000646610.1:ENST00000643337.1:ENST00000642835.1:ENST00000644893.1:ENST00000438357.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	832	2	3.46389	3.77787	4.09185	0.00557458	1.16728e-4	0.0493906	0.00308676
chr17	7178210	7178304	6847859	0	-	0.62766	(0.58,1]	chr17	693469	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000574388.5:ENST00000573596.1:ENST00000573083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	191	2	3.0904	3.777675	4.46495	0.00234598	0.00228763	0.0305046	0.0253261
chr19	7169747	7169843	7323968	0	-	0.395833	(0.39,0.419]	chr19	756803	13	INTRON	INTRON	INSR	ENSG00000171105.14	ENST00000341500.9:ENST00000302850.10:ENST00000598216.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	2.61462	3.77761	4.9406	0.0658437	0.0572875	0.174149	0.162385
chr9	129612361	129612460	4250954	0	+	0.636364	(0.58,1]	chr9	404743	28	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	3.06331	3.777235	4.49116	0.036259	0.0207449	0.127941	0.102713
chr8	25410995	25411093	3776415	0	+	0.438776	(0.419,0.45]	chr8	363771	4	SS3_PROX	SS3_PROX:INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000467709.6:ENST00000521405.1:ENST00000479547.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	139	2	3.71446	3.7770200000000003	3.83958	0.0160926	0.00621762	0.0869732	0.0496139
chr17	42201244	42201343	6903091	0	-	0.454545	(0.45,0.485]	chr17	702115	22	UTR3	UTR3:EXON_MRNA	STAT5B	ENSG00000173757.10	ENST00000293328.8	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.98123	3.776865	4.5725	0.0926859	0.0270875	0.188571	0.119337
chr6	3321268	3321368	3086698	0	-	0.61	(0.58,1]	chr6	299762	227	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000467144.5:ENST00000496753.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	277	2	3.66867	3.7763999999999998	3.88413	0.00316853	3.0337e-4	0.0360429	0.00612421
chr3	126457159	126457258	1907443	0	-	0.515152	(0.485,0.523]	chr3	193566	139	INTRON	INTRON	ZXDC	ENSG00000070476.15	ENST00000389709.8:ENST00000515545.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	61	2	2.0783	3.776275	5.47425	0.0693	0.0243396	0.194071	0.106588
chr22	28932379	28932479	7705765	0	+	0.52	(0.485,0.523]	chr22	806321	145	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7:ENST00000402174.5	protein_coding	protein_coding	protein_coding	protein_coding	4	84	2	2.11794	3.776235	5.43453	0.0344121	0.0258944	0.134884	0.109555
chr20	44407180	44407275	7482989	0	+	0.515789	(0.485,0.523]	chr20	779651	11	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	60	2	2.33451	3.7761	5.21769	0.0426546	0.0359739	0.149802	0.127853
chr3	119926327	119926426	1885420	0	-	0.414141	(0.39,0.419]	chr3	191353	20	INTRON	INTRON	GSK3B	ENSG00000082701.17	ENST00000264235.13:ENST00000316626.6:ENST00000678439.1:ENST00000677502.1:ENST00000676566.1:ENST00000650344.2:ENST00000678181.1:ENST00000678561.1:ENST00000678787.1:ENST00000679066.1:ENST00000677788.1:ENST00000678245.1:ENST00000677169.1:ENST00000677885.1:ENST00000678350.1:ENST00000676775.1:ENST00000677878.1:ENST00000677875.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	133	2	3.75165	3.77602	3.80039	0.0173118	0.00484195	0.0898477	0.0418176
chr2	238450963	238451062	1074195	0	+	0.545455	(0.523,0.58]	chr2	116452	46	UTR3	UTR3:EXON_MRNA:INTRON	ASB1	ENSG00000065802.12	ENST00000264607.9:ENST00000481566.1:ENST00000473306.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	72	2	2.07805	3.775935	5.47382	0.0476935	0.0244797	0.158666	0.106683
chr11	70742284	70742384	5061704	0	-	0.54	(0.523,0.58]	chr11	492701	244	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	121	2	3.7036	3.775805	3.84801	0.0156851	0.00343547	0.0852152	0.0333396
chr22	29020418	29020517	7706650	0	+	0.50505	(0.485,0.523]	chr22	806337	19	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7:ENST00000402174.5:ENST00000406323.3	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.97038	3.77569	4.581	0.085711	0.0267011	0.181766	0.118343
chr22	29831645	29831744	7784874	0	-	0.494949	(0.485,0.523]	chr22	816450	37	INTRON	INTRON	ASCC2	ENSG00000100325.15	ENST00000542393.5:ENST00000307790.8:ENST00000458594.5:ENST00000397771.6:ENST00000449900.6:ENST00000431535.5:ENST00000495967.5:ENST00000412689.5:ENST00000465667.6:ENST00000495681.5:ENST00000462454.1:ENST00000453160.5:ENST00000460313.1:ENST00000454854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	60	2	2.28678	3.775265	5.26375	0.046853	0.0335928	0.156896	0.124319
chr12	69272875	69272974	5260239	0	+	0.343434	(0.33,0.36]	chr12	512932	35	UTR3	UTR3:EXON_MRNA	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	233	2	3.05445	3.77476	4.49507	0.00417085	0.00407553	0.0418861	0.0373578
chr4	10104678	10104774	2195697	0	-	0.5	(0.485,0.523]	chr4	222418	3	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.53228	3.774735	5.01719	0.0614918	0.0480495	0.18013	0.144601
chr2	65421865	65421965	1172074	0	-	0.41	(0.39,0.419]	chr2	127582	413	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	5	247	2	2.59996	3.7746250000000003	4.94929	0.0344286	2.35336e-4	0.126025	0.00508149
chr19	940523	940623	7185251	0	+	0.58	(0.523,0.58]	chr19	730741	74	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	168	2	3.35964	3.77442	4.1892	0.01354	0.00138633	0.0793234	0.0179017
chr10	122115430	122115530	4599654	0	+	0.52	(0.485,0.523]	chr10	439774	18	INTRON	INTRON	TACC2	ENSG00000138162.19	ENST00000369005.6:ENST00000513429.5:ENST00000515603.5:ENST00000515273.5:ENST00000334433.7:ENST00000358010.5:ENST00000453444.6:ENST00000493951.5:ENST00000369001.5:ENST00000492237.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	76	2	2.53144	3.774315	5.01719	0.0480495	0.0180879	0.144601	0.0954351
chr3	30636346	30636446	1433390	0	+	0.39	(0.36,0.39]	chr3	153006	31	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4:ENST00000673250.1:ENST00000672866.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	882	2	3.28421	3.77425	4.26429	0.0069591	7.91e-5	0.055491	0.00229241
chr6	144468740	144468839	3021721	0	+	0.383838	(0.36,0.39]	chr6	295268	55	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.5517	3.77421	4.99672	0.0637554	0.0604395	0.184651	0.158506
chr6	169574839	169574938	3303603	0	-	0.525253	(0.523,0.58]	chr6	319808	19	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000479310.5:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	61	2	2.64274	3.77387	4.905	0.0563605	0.0221922	0.154188	0.108193
chr17	12076394	12076494	6680434	0	+	0.27	[0,0.29]	chr17	670598	62	INTRON	INTRON	MAP2K4	ENSG00000065559.15	ENST00000582183.5:ENST00000415385.7:ENST00000602305.5:ENST00000602375.5:ENST00000602811.5:ENST00000353533.10:ENST00000602537.5:ENST00000602686.5:ENST00000538465.7:ENST00000582897.5:ENST00000581941.5:ENST00000579089.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.85917	3.77386	4.68855	0.0554735	0.0318818	0.154188	0.129299
chr12	26648893	26648993	5399733	0	-	0.3	(0.29,0.33]	chr12	528625	165	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.52708	3.7737499999999997	5.02042	0.0944237	0.0103902	0.188571	0.0682598
chr19	18466318	18466418	7347854	0	-	0.62	(0.58,1]	chr19	761485	4	SS3_PROX	SS3_PROX:INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.38295	3.77374	5.16453	0.0730701	0.0249802	0.199669	0.10758
chr17	63765047	63765147	6944761	0	-	0.35	(0.33,0.36]	chr17	708300	2	SS3_PROX	SS3_PROX:INTRON	CCDC47	ENSG00000108588.15	ENST00000225726.10:ENST00000403162.7:ENST00000582252.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.77362	3.773585	4.77355	0.0735809	0.041944	0.17026	0.149108
chr4	719525	719624	1993823	0	+	0.646465	(0.58,1]	chr4	203088	132	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	2.40217	3.77357	5.14497	0.100879	0.00474658	0.196131	0.0413976
chr4	886572	886671	2178468	0	-	0.50505	(0.485,0.523]	chr4	220626	9	EXON_MRNA	EXON_MRNA:INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000504435.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	123	2	3.0179	3.773395	4.52889	0.0479403	5.4844e-4	0.144601	0.00933876
chr8	630637	630737	3932026	0	-	0.62	(0.58,1]	chr8	376005	30	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	167	2	3.25165	3.773175	4.2947	0.00338022	0.00214913	0.0371948	0.0241566
chr9	134336540	134336640	4260788	0	+	0.65	(0.58,1]	chr9	406311	95	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	57	2	2.02776	3.772945	5.51813	0.0700362	0.013519	0.195209	0.0792526
chr10	103692727	103692827	4757023	0	-	0.69	(0.58,1]	chr10	454780	3	SS5_PROX	SS5_PROX:INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	110	2	3.60807	3.7729	3.93773	0.00708574	0.00495688	0.0558168	0.0425347
chr6	138466449	138466549	3273805	0	-	0.41	(0.39,0.419]	chr6	316903	189	INTRON	INTRON	NHSL1	ENSG00000135540.12	ENST00000427025.6:ENST00000343505.10:ENST00000342260.9:ENST00000426841.6:ENST00000491526.6:ENST00000533765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	96	2	2.4464	3.77273	5.09906	0.0535378	0.0187966	0.150319	0.0980631
chr1	17679779	17679879	55009	0	+	0.57	(0.523,0.58]	chr1	5603	148	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	126	2	3.62427	3.772575	3.92088	0.0106834	0.0060311	0.0701326	0.0484641
chr6	2267526	2267625	2824599	0	+	0.393939	(0.39,0.419]	chr6	277256	13	INTRON	INTRON	GMDS-DT	ENSG00000250903.10	ENST00000657072.1:ENST00000529893.6:ENST00000659523.1:ENST00000659643.1:ENST00000660978.1:ENST00000691004.1:ENST00000664738.1:ENST00000532124.6:ENST00000691547.1:ENST00000663428.1:ENST00000654526.1:ENST00000670895.1:ENST00000532564.8:ENST00000685772.1:ENST00000687264.1:ENST00000660533.1:ENST00000531092.6:ENST00000524770.6:ENST00000657589.1:ENST00000607519.2:ENST00000456943.6:ENST00000525811.5:ENST00000534441.5:ENST00000533653.5:ENST00000534468.1:ENST00000530346.6:ENST00000662000.1:ENST00000665610.1:ENST00000654970.1	lncRNA	lncRNA	lncRNA	lncRNA	1	47	2	2.54977	3.772575	4.99538	0.0640389	0.0613573	0.184676	0.158506
chr1	44239926	44240026	459570	0	-	0.6	(0.58,1]	chr1	55299	72	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.84993	3.7725150000000003	4.6951	0.0521567	0.0297842	0.148503	0.126591
chr17	78797331	78797430	6979422	0	-	0.59596	(0.58,1]	chr17	712642	18	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	USP36	ENSG00000055483.20	ENST00000588130.5:ENST00000587010.5:ENST00000591052.5:ENST00000589225.5:ENST00000587379.1:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.84993	3.7725150000000003	4.6951	0.0521567	0.0297842	0.148503	0.126591
chr21	43957537	43957636	7625359	0	+	0.69697	(0.58,1]	chr21	796924	19	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5:ENST00000398063.6:ENST00000398058.5:ENST00000457068.5:ENST00000448845.1:ENST00000422850.5:ENST00000546158.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.84993	3.7725150000000003	4.6951	0.0521567	0.0297842	0.148503	0.126591
chr5	1054481	1054581	2608365	0	-	0.62	(0.58,1]	chr5	259538	6	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10:ENST00000634447.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.84993	3.7725150000000003	4.6951	0.0521567	0.0297842	0.148503	0.126591
chr6	3351861	3351960	3087008	0	-	0.626263	(0.58,1]	chr6	299774	275	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000496753.1:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.84993	3.7725150000000003	4.6951	0.0521567	0.0297842	0.148503	0.126591
chr9	135840256	135840356	4431149	0	-	0.61	(0.58,1]	chr9	423507	123	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.84993	3.7725150000000003	4.6951	0.0521567	0.0297842	0.148503	0.126591
chr9	129501700	129501798	4250794	0	+	0.581633	(0.58,1]	chr9	404726	29	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	41	2	2.78186	3.77235	4.76284	0.0471737	0.0342923	0.143232	0.13449
chr22	42887843	42887943	7823002	0	-	0.6	(0.58,1]	chr22	820583	29	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000337959.8:ENST00000263246.8:ENST00000407585.5:ENST00000403744.7:ENST00000402229.5:ENST00000634914.1	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.37998	3.7722550000000004	5.16453	0.0345705	0.0249802	0.135397	0.10758
chr2	3297796	3297896	1081085	0	-	0.46	(0.45,0.485]	chr2	117633	151	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	61	2	2.3351	3.77208	5.20906	0.0438295	0.0399616	0.153511	0.133954
chr22	42089238	42089335	7818352	0	-	0.453608	(0.45,0.485]	chr22	820093	17	INTRON	INTRON	NDUFA6	ENSG00000184983.11	ENST00000498737.8:ENST00000617763.1	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.3351	3.77208	5.20906	0.0438295	0.0399616	0.153511	0.133954
chrX	120435803	120435902	8096598	0	-	0.353535	(0.33,0.36]	chrX	844120	40	INTRON	INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	75	2	2.12031	3.77199	5.42367	0.0467883	0.0299185	0.156817	0.116945
chr6	41721467	41721566	3132608	0	-	0.353535	(0.33,0.36]	chr6	305481	157	INTRON	INTRON	TFEB	ENSG00000112561.19	ENST00000358871.6:ENST00000373033.6:ENST00000230323.8:ENST00000677531.1:ENST00000403298.9:ENST00000420312.6:ENST00000424495.2:ENST00000678831.1:ENST00000419396.6:ENST00000416140.6:ENST00000678871.1:ENST00000394283.5:ENST00000679237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	64	2	2.64926	3.77197	4.89468	0.0629186	0.0238991	0.160778	0.111785
chr11	70768264	70768364	5061964	0	-	0.52	(0.485,0.523]	chr11	492701	504	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	55	2	2.57989	3.77175	4.96361	0.0899526	0.0112713	0.185791	0.071709
chr12	132954347	132954447	5542075	0	-	0.65	(0.58,1]	chr12	547064	57	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	49	2	2.45703	3.771185	5.08534	0.0933945	0.00549379	0.188571	0.0454065
chr10	100549731	100549831	4569163	0	+	0.41	(0.39,0.419]	chr10	436105	17	UTR3	UTR3:EXON_MRNA	HIF1AN	ENSG00000166135.14	ENST00000299163.7	protein_coding	protein_coding	protein_coding	protein_coding	5	239	2	3.198	3.770665	4.34333	0.00629788	0.00301592	0.0523832	0.0305643
chr3	42647453	42647552	1452466	0	+	0.494949	(0.485,0.523]	chr3	155084	16	UTR3	UTR3:EXON_MRNA	NKTR	ENSG00000114857.19	ENST00000429888.5:ENST00000232978.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	304	2	3.11735	3.770395	4.42344	0.0116729	1.95005e-4	0.0735761	0.00444735
chr10	74427573	74427673	4514455	0	+	0.41	(0.39,0.419]	chr10	431960	286	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000673352.1:ENST00000673310.1:ENST00000672920.1:ENST00000672394.1:ENST00000372734.5:ENST00000673027.1:ENST00000541550.6:ENST00000672604.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	71	2	2.9811	3.770265	4.55943	0.104562	0.0120015	0.19835	0.0754623
chr5	133999998	134000097	2764119	0	-	0.555556	(0.523,0.58]	chr5	270978	66	INTRON	INTRON	VDAC1	ENSG00000213585.11	ENST00000265333.8:ENST00000395044.7:ENST00000395047.6:ENST00000425992.2:ENST00000466080.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	118	2	3.35121	3.770205	4.1892	0.0284134	0.00138633	0.114906	0.0179017
chr20	8275001	8275101	7428012	0	+	0.35	(0.33,0.36]	chr20	773686	182	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	2.83079	3.7698650000000002	4.70894	0.0798152	0.0376711	0.176933	0.140049
chr7	139706541	139706640	3723211	0	-	0.444444	(0.419,0.45]	chr7	357498	745	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	2.30548	3.769775	5.23407	0.04996	0.0486006	0.161395	0.145074
chr15	25079645	25079744	6064687	0	+	0.434343	(0.419,0.45]	chr15	595536	6	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	SNHG14	ENSG00000224078.15	ENST00000640631.2:ENST00000662834.1:ENST00000667393.1:ENST00000669673.1:ENST00000668750.1:ENST00000664545.1:ENST00000656510.1:ENST00000654223.1:ENST00000549804.7:ENST00000660717.1:ENST00000661253.1:ENST00000670542.1:ENST00000664256.1:ENST00000655153.1:ENST00000666289.1:ENST00000657237.1:ENST00000670394.1:ENST00000667925.1:ENST00000653407.1:ENST00000671374.1:ENST00000668953.1:ENST00000665819.1:ENST00000666606.1:ENST00000660542.1:ENST00000667531.1:ENST00000654902.1:ENST00000656600.1:ENST00000662370.1:ENST00000671491.1:ENST00000661738.1:ENST00000553108.2:ENST00000660956.1	lncRNA	lncRNA	lncRNA	lncRNA	2	64	2	2.21736	3.769655	5.32195	0.058705	0.0431627	0.176098	0.138403
chr13	113331275	113331375	5753243	0	-	0.63	(0.58,1]	chr13	564094	48	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.91493	3.76948	4.62403	0.0578275	0.0259506	0.154343	0.116361
chr9	93672985	93673084	4184634	0	+	0.585859	(0.58,1]	chr9	397793	54	INTRON	INTRON	PHF2	ENSG00000197724.11	ENST00000359246.9:ENST00000375376.8:ENST00000610682.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.91493	3.76948	4.62403	0.0578275	0.0259506	0.154343	0.116361
chr1	40374223	40374323	100231	0	+	0.71	(0.58,1]	chr1	11922	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.87471	3.7694349999999996	4.66416	0.0495478	0.0144381	0.146562	0.0833845
chr16	4082270	4082370	6541453	0	-	0.59	(0.58,1]	chr16	650517	282	INTRON	INTRON	ADCY9	ENSG00000162104.10	ENST00000294016.8:ENST00000571467.1:ENST00000572288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	2.87471	3.7694349999999996	4.66416	0.0495478	0.0144381	0.146562	0.0833845
chr17	77375340	77375436	6804116	0	+	0.614583	(0.58,1]	chr17	686752	6	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1:ENST00000423034.6:ENST00000590059.5:ENST00000587514.1:ENST00000590586.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	2.87471	3.7694349999999996	4.66416	0.0495478	0.0144381	0.146562	0.0833845
chr21	44868808	44868906	7678530	0	-	0.571429	(0.523,0.58]	chr21	802773	28	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	496	2	3.0699	3.76929	4.46868	0.00819703	8.06744e-4	0.0591729	0.0168786
chr21	29306421	29306521	7603714	0	+	0.5	(0.485,0.523]	chr21	794428	7	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000548219.5:ENST00000550131.5:ENST00000547141.5:ENST00000546469.5:ENST00000286800.8:ENST00000399921.5:ENST00000548467.1:ENST00000451655.5:ENST00000447177.5:ENST00000435072.1	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	2.77877	3.7690799999999998	4.75939	0.0682166	0.0172254	0.164526	0.0923809
chr22	42930317	42930417	7823432	0	-	0.58	(0.523,0.58]	chr22	820614	178	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000337959.8:ENST00000263246.8:ENST00000407585.5:ENST00000403744.7:ENST00000402229.5:ENST00000453643.5:ENST00000422336.5:ENST00000418133.5:ENST00000445706.5:ENST00000453079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.46839	3.76898	5.06957	0.0683019	0.0448011	0.193274	0.140478
chr1	85708091	85708184	521746	0	-	0.623656	(0.58,1]	chr1	61418	6	CDS	CDS:EXON_MRNA	ZNHIT6	ENSG00000117174.11	ENST00000370574.4:ENST00000431532.6	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.71042	3.768975	4.82753	0.0427798	0.0396128	0.143388	0.13762
chr11	70747180	70747280	5061753	0	-	0.65	(0.58,1]	chr11	492701	293	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.71042	3.768975	4.82753	0.0427798	0.0396128	0.143388	0.13762
chr1	44512428	44512528	113127	0	+	0.55	(0.523,0.58]	chr1	14018	927	INTRON	INTRON	RNF220	ENSG00000187147.18	ENST00000355387.6:ENST00000361799.7:ENST00000372247.6	protein_coding	protein_coding	protein_coding	protein_coding	3	133	2	2.92878	3.7687299999999997	4.60868	0.0226775	0.0204216	0.108193	0.0979776
chr2	11483878	11483978	719699	0	+	0.25	[0,0.29]	chr2	84084	11	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000628795.2	protein_coding	protein_coding	protein_coding	protein_coding	3	70	2	2.28243	3.768585	5.25474	0.0299781	0.02298	0.126768	0.102982
chr6	30737593	30737691	3117936	0	-	0.408163	(0.39,0.419]	chr6	302750	13	INTRON	INTRON	FLOT1	ENSG00000137312.15	ENST00000376389.8:ENST00000487376.5:ENST00000413165.5:ENST00000476729.5:ENST00000438162.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	63	2	2.29339	3.7676049999999996	5.24182	0.0501037	0.0441194	0.161731	0.140174
chr19	1414349	1414449	7187490	0	+	0.43	(0.419,0.45]	chr19	731286	39	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	64	2	2.17119	3.76757	5.36395	0.0637569	0.0407485	0.184651	0.135868
chr10	131917090	131917189	4616187	0	+	0.565657	(0.523,0.58]	chr10	441069	41	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	65	2	3.19317	3.767175	4.34118	0.0372357	0.0366207	0.139793	0.128697
chr8	96583652	96583751	3869636	0	+	0.292929	(0.29,0.33]	chr8	371299	27	INTRON	INTRON	SDC2	ENSG00000169439.12	ENST00000302190.9:ENST00000518385.5:ENST00000522911.5:ENST00000519914.5	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.21906	3.76712	5.31518	0.0539212	0.0288318	0.167824	0.116067
chr19	38647907	38648007	7257842	0	+	0.71	(0.58,1]	chr19	743975	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	55	2	2.52834	3.767095	5.00585	0.0323732	0.0249502	0.121593	0.114418
chr18	13591832	13591931	7026511	0	+	0.363636	(0.36,0.39]	chr18	717646	60	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000677744.1:ENST00000593236.1:ENST00000678400.1:ENST00000586207.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	47	2	2.48379	3.7666399999999998	5.04949	0.0714535	0.0563927	0.198579	0.154188
chr1	1062778	1062878	1364	0	+	0.7	(0.58,1]	chr1	307	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000217801	ENSG00000217801.11	ENST00000688131.1:ENST00000456409.6:ENST00000692821.1:ENST00000394517.7:ENST00000427998.6:ENST00000685011.1:ENST00000692266.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	55	2	2.27185	3.766615	5.26138	0.0433824	0.021217	0.152119	0.0996078
chr4	3366487	3366587	2005101	0	+	0.71	(0.58,1]	chr4	204663	231	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	55	2	2.27185	3.766615	5.26138	0.0433824	0.021217	0.152119	0.0996078
chr16	67141393	67141493	6470959	0	+	0.49	(0.485,0.523]	chr16	642277	4	INTRON	INTRON	PHAF1	ENSG00000125149.12	ENST00000219139.8:ENST00000563853.6:ENST00000569600.5:ENST00000567162.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	56	2	2.70247	3.766595	4.83072	0.0759932	0.0148956	0.174411	0.0847741
chr9	78297370	78297470	4172934	0	+	0.63	(0.58,1]	chr9	396767	1	SS5_PROX	SS5_PROX:INTRON	PSAT1	ENSG00000135069.14	ENST00000376588.4:ENST00000347159.6	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	2.22558	3.766525	5.30747	0.0311606	0.0196049	0.127822	0.0955413
chr11	70819063	70819163	5062474	0	-	0.59	(0.58,1]	chr11	492713	115	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.47204	3.7663699999999998	5.0607	0.0623526	0.029633	0.181127	0.116079
chr2	235495548	235495648	1062551	0	+	0.61	(0.58,1]	chr2	115651	3	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.47204	3.7663699999999998	5.0607	0.0623526	0.029633	0.181127	0.116079
chr2	239307790	239307889	1391787	0	-	0.585859	(0.58,1]	chr2	148744	93	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	2.47204	3.7663699999999998	5.0607	0.0623526	0.029633	0.181127	0.116079
chr7	140697491	140697574	3508359	0	+	0.686747	(0.58,1]	chr7	338135	1	SS5_PROX	SS5_PROX:INTRON	NDUFB2	ENSG00000090266.13	ENST00000482954.5:ENST00000476279.5:ENST00000461457.1:ENST00000465506.5:ENST00000247866.9:ENST00000464564.6:ENST00000476181.5:ENST00000464566.5:ENST00000460088.5:ENST00000472695.5:ENST00000476470.5:ENST00000471136.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.47204	3.7663699999999998	5.0607	0.0623526	0.029633	0.181127	0.116079
chr9	134410907	134411006	4261542	0	+	0.646465	(0.58,1]	chr9	406352	14	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000481739.2:ENST00000356384.4:ENST00000672570.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.47204	3.7663699999999998	5.0607	0.0623526	0.029633	0.181127	0.116079
chr4	78165651	78165751	2066950	0	+	0.56	(0.523,0.58]	chr4	211144	937	INTRON	INTRON	FRAS1	ENSG00000138759.20	ENST00000512123.4:ENST00000682513.1:ENST00000684159.1:ENST00000508900.2:ENST00000325942.11:ENST00000502446.6:ENST00000683711.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	65	2	2.9514	3.7659900000000004	4.58058	0.0860403	0.0109262	0.181766	0.0706366
chr19	947207	947306	7185318	0	+	0.59596	(0.58,1]	chr19	730741	141	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	106	2	3.75733	3.765935	3.77454	0.00981158	0.0033279	0.0668871	0.0325742
chr1	230107830	230107930	359825	0	+	0.58	(0.523,0.58]	chr1	40627	159	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.74768	3.7657599999999998	4.78384	0.0663135	0.0411359	0.162385	0.147756
chr11	70779556	70779655	5062077	0	-	0.555556	(0.523,0.58]	chr11	492701	617	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.74768	3.7657599999999998	4.78384	0.0663135	0.0411359	0.162385	0.147756
chr11	72776341	72776440	5070705	0	-	0.525253	(0.523,0.58]	chr11	493498	166	INTRON	INTRON	ARAP1:STARD10	ENSG00000186635.15:ENSG00000214530.10	ENST00000359373.9:ENST00000334805.11:ENST00000543304.5:ENST00000538536.5:ENST00000538437.5:ENST00000545082.5:ENST00000537947.5:ENST00000542989.5:ENST00000546314.5:ENST00000535267.1:ENST00000539138.1:ENST00000535054.1:ENST00000536290.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	44	2	2.74768	3.7657599999999998	4.78384	0.0663135	0.0411359	0.162385	0.147756
chr2	200394570	200394669	986847	0	+	0.323232	(0.29,0.33]	chr2	108327	9	INTRON	INTRON	SPATS2L	ENSG00000196141.14	ENST00000439084.5:ENST00000409718.5:ENST00000358677.9:ENST00000409988.7:ENST00000409385.5:ENST00000439395.5:ENST00000444012.5:ENST00000451764.6:ENST00000360760.9:ENST00000423749.5:ENST00000457757.5:ENST00000453663.5:ENST00000409140.8:ENST00000409397.6:ENST00000619961.4:ENST00000409151.5:ENST00000421573.5:ENST00000449647.5:ENST00000438761.5	protein_coding	protein_coding	protein_coding	protein_coding	2	118	2	3.25815	3.7657	4.27325	0.0316508	0.0011707	0.121016	0.0157899
chr20	37507322	37507421	7559841	0	-	0.575758	(0.523,0.58]	chr20	789576	35	INTRON	INTRON	BLCAP	ENSG00000166619.15	ENST00000411780.1:ENST00000467603.1	protein_coding	processed_transcript	protein_coding	processed_transcript	3	161	2	3.04714	3.76562	4.4841	0.0234449	6.06023e-4	0.104248	0.0100269
chr1	8542416	8542515	392970	0	-	0.424242	(0.419,0.45]	chr1	45029	7	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000469251.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	77	2	1.9738	3.765595	5.55739	0.0645318	0.0310506	0.185295	0.119758
chr12	120977620	120977719	5524696	0	-	0.50505	(0.485,0.523]	chr12	544219	3	INTRON	INTRON	HNF1A-AS1	ENSG00000241388.5	ENST00000619441.1:ENST00000647473.1:ENST00000646404.1:ENST00000537361.1:ENST00000433033.3:ENST00000535301.2	lncRNA	lncRNA	lncRNA	lncRNA	7	390	2	3.74879	3.765565	3.78234	0.00346424	6.63378e-4	0.0377867	0.010687
chr5	1056696	1056787	2608388	0	-	0.659341	(0.58,1]	chr5	259543	1	SS3_PROX	SS3_PROX:INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10:ENST00000634447.1	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	2.44544	3.76539	5.08534	0.0516128	0.00549379	0.148503	0.0454065
chr5	138840315	138840415	2546631	0	+	0.48	(0.45,0.485]	chr5	252844	122	INTRON	INTRON	CTNNA1	ENSG00000044115.21	ENST00000627109.2:ENST00000521724.5:ENST00000302763.12:ENST00000518825.5:ENST00000523275.5:ENST00000517534.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	3.03233	3.765095	4.49786	0.101311	0.0244076	0.196131	0.113311
chr19	36574900	36575000	7248411	0	+	0.33	(0.29,0.33]	chr19	743009	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF529-AS1	ENSG00000233527.10	ENST00000475219.6:ENST00000670019.1:ENST00000687100.1:ENST00000448373.6:ENST00000592880.6:ENST00000670806.1	lncRNA	lncRNA	lncRNA	lncRNA	1	54	2	2.57172	3.765015	4.95831	0.0888658	0.0118616	0.183874	0.0746945
chr16	8840512	8840612	6382799	0	+	0.41	(0.39,0.419]	chr16	631333	114	INTRON	INTRON	PMM2	ENSG00000140650.13	ENST00000566983.5:ENST00000683435.1:ENST00000683094.1:ENST00000566604.5:ENST00000268261.9:ENST00000683274.1:ENST00000682393.1:ENST00000566540.5:ENST00000562318.5:ENST00000570076.5:ENST00000569958.5:ENST00000565221.5:ENST00000567697.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	2.48186	3.765005	5.04815	0.0717596	0.0572698	0.199212	0.154343
chr3	149180038	149180133	1939227	0	-	0.484211	(0.45,0.485]	chr3	197323	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	CP	ENSG00000047457.14	ENST00000481169.5:ENST00000264613.11:ENST00000460674.5:ENST00000494544.1:ENST00000490639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	88	2	2.64423	3.76495	4.88567	0.0475981	0.0146126	0.144437	0.0837727
chr19	37230008	37230108	7252181	0	+	0.52	(0.485,0.523]	chr19	743321	2	SS3_PROX	SS3_PROX:INTRON	ZNF383	ENSG00000188283.12	ENST00000586068.5:ENST00000590503.5:ENST00000684119.1:ENST00000589413.5:ENST00000352998.7:ENST00000588371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	3.02337	3.764855	4.50634	0.0939553	0.023933	0.188571	0.111785
chr3	52537986	52538083	1473732	0	+	0.505155	(0.485,0.523]	chr3	158431	7	INTRON	INTRON	SMIM4	ENSG00000168273.8	ENST00000491607.5:ENST00000482728.1:ENST00000307106.3:ENST00000476842.1:ENST00000477703.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	3.02337	3.764855	4.50634	0.0939553	0.023933	0.188571	0.111785
chr2	3330727	3330827	1081419	0	-	0.55	(0.523,0.58]	chr2	117645	103	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.80981	3.7645150000000003	4.71922	0.0721601	0.0364868	0.168159	0.139793
chr3	66017398	66017498	1815656	0	-	0.53	(0.523,0.58]	chr3	187318	83	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	2.80981	3.7645150000000003	4.71922	0.0721601	0.0364868	0.168159	0.139793
chr16	69071893	69071993	6481119	0	+	0.54	(0.523,0.58]	chr16	643682	311	INTRON	INTRON	TANGO6	ENSG00000103047.8	ENST00000261778.2:ENST00000562000.5:ENST00000568361.5:ENST00000561931.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	44	2	2.68276	3.764225	4.84569	0.0610722	0.0464998	0.158506	0.156036
chr22	28918080	28918180	7705622	0	+	0.56	(0.523,0.58]	chr22	806321	2	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7:ENST00000402174.5	protein_coding	protein_coding	protein_coding	protein_coding	2	118	2	3.2478	3.7637899999999997	4.27978	0.0335771	0.00107949	0.124319	0.0149203
chr16	50154958	50155058	6448411	0	+	0.52	(0.485,0.523]	chr16	639560	3	INTRON	INTRON	TENT4B	ENSG00000121274.14	ENST00000436909.8:ENST00000561678.7:ENST00000562717.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.45723	3.76361	5.06999	0.0700289	0.0445854	0.195209	0.140478
chr14	37706101	37706201	5788038	0	+	0.48	(0.45,0.485]	chr14	567101	42	INTRON	INTRON	TTC6	ENSG00000139865.17	ENST00000553443.6:ENST00000533625.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	61	2	2.46542	3.7634	5.06138	0.0492008	0.0337868	0.146142	0.133182
chr2	164682768	164682867	1297927	0	-	0.454545	(0.45,0.485]	chr2	139182	27	UTR3	UTR3:EXON_MRNA:INTRON	COBLL1	ENSG00000082438.18	ENST00000495084.1:ENST00000652658.2:ENST00000375458.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.62955	3.7632	4.89685	0.0614781	0.0530416	0.167062	0.158506
chr7	131048446	131048545	3712238	0	-	0.474747	(0.45,0.485]	chr7	356771	52	INTRON	INTRON	LINC-PINT	ENSG00000231721.7	ENST00000647388.1:ENST00000423414.5:ENST00000433079.5:ENST00000642156.1:ENST00000646429.1:ENST00000451786.5:ENST00000646587.1:ENST00000645248.1:ENST00000642602.1:ENST00000644804.1:ENST00000647288.1:ENST00000643373.1:ENST00000643135.1:ENST00000643855.1:ENST00000643874.1:ENST00000644188.1:ENST00000435523.5:ENST00000431189.1:ENST00000642483.1:ENST00000416999.1	lncRNA	lncRNA	lncRNA	lncRNA	1	45	2	2.62955	3.7632	4.89685	0.0614781	0.0530416	0.167062	0.158506
chr11	70802728	70802828	5062310	0	-	0.55	(0.523,0.58]	chr11	492707	38	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5:ENST00000460048.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	123	2	3.69181	3.76305	3.83429	0.012469	0.00510333	0.0761905	0.0433857
chr11	68511641	68511741	4883991	0	+	0.51	(0.485,0.523]	chr11	470702	60	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	317	2	3.58517	3.7629	3.94063	0.00606063	4.15421e-4	0.0514368	0.00768537
chr3	172090882	172090982	1627976	0	+	0.35	(0.33,0.36]	chr3	170535	436	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	2.51922	3.76282	5.00642	0.0659899	0.0542065	0.189025	0.151733
chr8	38772090	38772190	3802276	0	+	0.35	(0.33,0.36]	chr8	365828	143	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.51922	3.76282	5.00642	0.0659899	0.0542065	0.189025	0.151733
chr2	3361629	3361729	1081732	0	-	0.62	(0.58,1]	chr2	117664	66	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.63525	3.76235	4.88945	0.0459151	0.0388928	0.154743	0.131324
chr2	239276581	239276680	1391474	0	-	0.636364	(0.58,1]	chr2	148740	250	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	41	2	2.63525	3.76235	4.88945	0.0459151	0.0388928	0.154743	0.131324
chr20	25508774	25508874	7540046	0	-	0.6	(0.58,1]	chr20	787048	33	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.63525	3.76235	4.88945	0.0459151	0.0388928	0.154743	0.131324
chr7	218356	218455	3305838	0	+	0.717172	(0.58,1]	chr7	320161	90	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.63525	3.76235	4.88945	0.0459151	0.0388928	0.154743	0.131324
chr11	2661607	2661707	4971927	0	-	0.53	(0.523,0.58]	chr11	481197	534	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	2	60	2	2.09041	3.7622600000000004	5.43411	0.0674148	0.026041	0.192827	0.109673
chr10	75468313	75468413	4520841	0	+	0.42	(0.419,0.45]	chr10	432249	167	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.7072600000000002	3.761985	4.81671	0.08258	0.0496323	0.179396	0.160725
chr16	56782641	56782741	6463879	0	+	0.43	(0.419,0.45]	chr16	640949	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NUP93	ENSG00000102900.13	ENST00000563858.5:ENST00000308159.10:ENST00000566315.5:ENST00000569842.5:ENST00000569863.5:ENST00000562496.5:ENST00000568656.5:ENST00000566678.1:ENST00000564887.5:ENST00000566727.5:ENST00000569595.5:ENST00000567641.5:ENST00000568283.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.7072600000000002	3.761985	4.81671	0.08258	0.0496323	0.179396	0.160725
chr2	54549599	54549699	799209	0	+	0.44	(0.419,0.45]	chr2	90794	210	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.7072600000000002	3.761985	4.81671	0.08258	0.0496323	0.179396	0.160725
chr3	188264952	188265052	1652908	0	+	0.45	(0.419,0.45]	chr3	173754	244	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.7072600000000002	3.761985	4.81671	0.08258	0.0496323	0.179396	0.160725
chr3	197792139	197792239	1668699	0	+	0.43	(0.419,0.45]	chr3	175021	2	INTRON	INTRON	LRCH3	ENSG00000186001.14	ENST00000443727.1:ENST00000438796.6:ENST00000428136.2:ENST00000425562.7:ENST00000441090.6:ENST00000414675.6:ENST00000334859.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.7072600000000002	3.761985	4.81671	0.08258	0.0496323	0.179396	0.160725
chr1	42849606	42849658	105833	0	+	0.442308	(0.419,0.45]	chr1	12811	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ZNF691	ENSG00000164011.18	ENST00000372502.5:ENST00000372508.7:ENST00000651192.1:ENST00000372507.5:ENST00000372506.5:ENST00000372504.5:ENST00000397034.3:ENST00000372503.2	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.64776	3.76187	4.87598	0.0768574	0.0551054	0.174882	0.169163
chr18	2686697	2686797	7001401	0	+	0.42	(0.419,0.45]	chr18	715609	122	INTRON	INTRON	SMCHD1	ENSG00000101596.17	ENST00000320876.11:ENST00000688342.1:ENST00000684915.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	2.64776	3.76187	4.87598	0.0768574	0.0551054	0.174882	0.169163
chr2	32532246	32532346	749593	0	+	0.42	(0.419,0.45]	chr2	87501	1	PRIMIRNA	PRIMIRNA:INTRON	BIRC6:MIR558	ENSG00000115760.15:ENSG00000207653.1	ENST00000421745.7:ENST00000471232.5:ENST00000384920.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:retained_intron:primary_miRNA	1	47	2	2.64776	3.76187	4.87598	0.0768574	0.0551054	0.174882	0.169163
chr7	211671	211770	3305771	0	+	0.636364	(0.58,1]	chr7	320161	23	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.57459	3.761705	4.94882	0.0354433	0.0224622	0.127188	0.108193
chr14	91222020	91222116	5899577	0	+	0.59375	(0.58,1]	chr14	576435	14	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	77	2	2.262	3.7616899999999998	5.26138	0.0213401	0.021217	0.104721	0.0996078
chr4	151138726	151138818	2350646	0	-	0.326087	(0.29,0.33]	chr4	235015	5	INTRON	INTRON	SH3D19	ENSG00000109686.19	ENST00000409598.8:ENST00000604030.7:ENST00000304527.8:ENST00000409252.6:ENST00000514152.5:ENST00000478503.6:ENST00000652233.1:ENST00000427414.2:ENST00000508492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	55	2	2.69789	3.7616650000000003	4.82544	0.0745282	0.0156279	0.172224	0.0877396
chr6	41520090	41520190	3131929	0	-	0.6	(0.58,1]	chr6	305424	248	INTRON	INTRON	FOXP4-AS1	ENSG00000234753.6	ENST00000691406.1:ENST00000440194.1	lncRNA	lncRNA	lncRNA	lncRNA	1	50	2	2.7038	3.76121	4.81862	0.0648563	0.0102696	0.162218	0.0678072
chr2	105328626	105328725	1242822	0	-	0.494949	(0.485,0.523]	chr2	134005	200	INTRON	INTRON	TGFBRAP1	ENSG00000135966.13	ENST00000393359.7	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.7365	3.7603799999999996	4.78426	0.0660335	0.0423471	0.162385	0.149195
chr2	232862788	232862888	1056998	0	+	0.5	(0.485,0.523]	chr2	114997	23	INTRON	INTRON	SNORC	ENSG00000182600.10	ENST00000448993.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.7365	3.7603799999999996	4.78426	0.0660335	0.0423471	0.162385	0.149195
chr20	32110637	32110736	7454179	0	+	0.494949	(0.485,0.523]	chr20	775903	2	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000442842.5:ENST00000450829.5:ENST00000217315.9:ENST00000417389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	2.7365	3.7603799999999996	4.78426	0.0660335	0.0423471	0.162385	0.149195
chr20	37506338	37506436	7559831	0	-	0.489796	(0.485,0.523]	chr20	789576	25	INTRON	INTRON	BLCAP	ENSG00000166619.15	ENST00000411780.1:ENST00000467603.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	44	2	2.7365	3.7603799999999996	4.78426	0.0660335	0.0423471	0.162385	0.149195
chr20	16440567	16440667	7530379	0	-	0.51	(0.485,0.523]	chr20	785851	102	INTRON	INTRON	KIF16B	ENSG00000089177.19	ENST00000354981.7:ENST00000636835.1:ENST00000408042.5	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.62192	3.7603099999999996	4.8987	0.0849566	0.0129327	0.181766	0.0778105
chr15	24984914	24985013	6063694	0	+	0.363636	(0.36,0.39]	chr15	595387	26	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	7	393	2	3.08967	3.76024	4.43081	0.0149911	1.42659e-4	0.0837462	0.00355159
chr6	13589925	13590020	2855846	0	+	0.526316	(0.523,0.58]	chr6	279046	5	INTRON	INTRON	SIRT5	ENSG00000124523.17	ENST00000680432.1:ENST00000681012.1:ENST00000397350.7:ENST00000680442.1:ENST00000680754.1:ENST00000679658.1:ENST00000681243.1:ENST00000680747.1:ENST00000681818.1:ENST00000680402.1:ENST00000679663.1:ENST00000379250.10:ENST00000680852.1:ENST00000679922.1:ENST00000681231.1:ENST00000359782.8:ENST00000606117.2:ENST00000379262.8:ENST00000681905.1:ENST00000680937.1:ENST00000680151.1:ENST00000680707.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	2.61478	3.7598900000000004	4.905	0.0563605	0.052707	0.167062	0.154188
chr20	37517218	37517317	7559942	0	-	0.585859	(0.58,1]	chr20	789582	77	INTRON	INTRON	BLCAP	ENSG00000166619.15	ENST00000467603.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	57	2	2.82468	3.75989	4.6951	0.0521567	0.0123866	0.148503	0.0765738
chr16	78481349	78481449	6499225	0	+	0.34	(0.33,0.36]	chr16	645683	482	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000684632.1:ENST00000627394.3:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6:ENST00000408984.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	64	2	2.68424	3.75981	4.83538	0.0679743	0.0221824	0.164413	0.108193
chr3	30642146	30642246	1433448	0	+	0.44	(0.419,0.45]	chr3	153006	89	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4:ENST00000673250.1:ENST00000672866.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.7644	3.75965	4.7549	0.0888907	0.0447981	0.183874	0.154539
chr5	73783038	73783138	2453264	0	+	0.42	(0.419,0.45]	chr5	244950	19	INTRON	INTRON	ARHGEF28	ENSG00000214944.10	ENST00000545377.5:ENST00000296794.10:ENST00000513042.7:ENST00000426542.6:ENST00000437974.5	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.7644	3.75965	4.7549	0.0888907	0.0447981	0.183874	0.154539
chr10	79112620	79112720	4532481	0	+	0.57	(0.523,0.58]	chr10	432420	430	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.48975	3.75951	5.02927	0.101574	0.0095202	0.196431	0.0650078
chr11	115480996	115481096	5130900	0	-	0.27	[0,0.29]	chr11	498122	348	INTRON	INTRON	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000541434.5:ENST00000543249.1:ENST00000540951.1:ENST00000536781.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.97596	3.7593550000000002	4.54275	0.0681032	0.0250673	0.164448	0.114418
chr6	127309380	127309480	3251235	0	-	0.28	[0,0.29]	chr6	314921	148	INTRON	INTRON	ECHDC1	ENSG00000093144.19	ENST00000454859.8:ENST00000531967.5:ENST00000474289.6:ENST00000368295.8:ENST00000454591.6:ENST00000528402.5:ENST00000479525.6:ENST00000368291.6:ENST00000475319.1:ENST00000430841.6:ENST00000368289.6:ENST00000417628.6:ENST00000368292.10:ENST00000436638.5:ENST00000460558.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	2.97596	3.7593550000000002	4.54275	0.0681032	0.0250673	0.164448	0.114418
chr9	133913465	133913565	4429535	0	-	0.49	(0.485,0.523]	chr9	423310	517	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.79862	3.75913	4.71964	0.0718646	0.0375966	0.168159	0.139924
chr20	32377645	32377745	7455882	0	+	0.51	(0.485,0.523]	chr20	776143	52	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	271	2	2.38262	3.758865	5.13511	0.0154827	0.00102615	0.0871284	0.0192506
chr1	89851255	89851355	181003	0	+	0.36	(0.33,0.36]	chr1	19585	42	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	2	70	2	3.02169	3.758705	4.49572	0.103264	0.0104209	0.197541	0.0684504
chr3	13026194	13026294	1689398	0	-	0.59	(0.58,1]	chr3	176542	37	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	1.96033	3.7585699999999997	5.55681	0.0426346	0.0126042	0.149802	0.0761905
chr2	108588112	108588211	871489	0	+	0.323232	(0.29,0.33]	chr2	98292	74	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1:ENST00000695519.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.44033	3.758545	5.07676	0.072701	0.0412683	0.199502	0.136301
chr20	512832	512932	7512768	0	-	0.3	(0.29,0.33]	chr20	784124	21	INTRON	INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000644710.1:ENST00000647155.1:ENST00000644003.1:ENST00000645249.1:ENST00000647026.1:ENST00000400217.7:ENST00000647348.1:ENST00000643600.1:ENST00000643680.1:ENST00000460062.7:ENST00000643968.1:ENST00000644177.1:ENST00000609525.2:ENST00000645091.1:ENST00000609606.6:ENST00000608066.6:ENST00000646908.1:ENST00000645187.1:ENST00000642160.1:ENST00000608490.2:ENST00000643910.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.44033	3.758545	5.07676	0.072701	0.0412683	0.199502	0.136301
chr7	74365507	74365606	3390944	0	+	0.666667	(0.58,1]	chr7	327282	8	INTRON	INTRON	CLIP2	ENSG00000106665.16	ENST00000223398.11:ENST00000361545.9	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	1.96011	3.75846	5.55681	0.0549599	0.0126042	0.168901	0.0761905
chr20	34566847	34566947	7547096	0	-	0.48	(0.45,0.485]	chr20	787854	55	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.87326	3.75836	4.64346	0.0850039	0.033576	0.181766	0.133139
chr13	29552063	29552162	5677537	0	-	0.424242	(0.419,0.45]	chr13	557653	155	INTRON	INTRON	SLC7A1	ENSG00000139514.13	ENST00000380752.10:ENST00000450494.1	protein_coding	protein_coding	protein_coding	protein_coding	2	134	2	3.08499	3.7579700000000003	4.43095	0.0509743	0.00105051	0.148503	0.0146865
chr3	65916668	65916767	1814645	0	-	0.454545	(0.45,0.485]	chr3	187310	91	INTRON	INTRON	MAGI1:MAGI1-IT1	ENSG00000151276.24:ENSG00000272610.1	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5:ENST00000460754.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	2	121	2	3.38032	3.757965	4.13561	0.0285946	0.0017907	0.115498	0.0213868
chr20	44405857	44405957	7482974	0	+	0.52	(0.485,0.523]	chr20	779646	4	SS3_PROX	SS3_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	399	2	3.53729	3.757455	3.97762	0.00664254	1.77907e-4	0.0540577	0.00416313
chr11	73514767	73514866	5075178	0	-	0.515152	(0.485,0.523]	chr11	493745	459	INTRON	INTRON	FAM168A	ENSG00000054965.11	ENST00000064778.8:ENST00000356467.5:ENST00000450446.6:ENST00000632101.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	81	2	2.48786	3.7567950000000003	5.02573	0.0579645	0.00985879	0.154685	0.0664239
chr6	1667174	1667274	3079541	0	-	0.43	(0.419,0.45]	chr6	299460	411	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	81	2	2.47244	3.7564349999999997	5.04043	0.0625897	0.0240615	0.160305	0.112363
chr2	175663155	175663255	959978	0	+	0.48	(0.45,0.485]	chr2	105443	682	INTRON	INTRON	ENSG00000289349	ENSG00000289349.1	ENST00000692740.1:ENST00000685522.1	lncRNA	lncRNA	lncRNA	lncRNA	1	57	2	2.69512	3.75642	4.81772	0.0794176	0.0167663	0.176565	0.0917029
chr4	158830686	158830782	2157177	0	+	0.46875	(0.45,0.485]	chr4	218576	11	INTRON	INTRON	FNIP2	ENSG00000052795.13	ENST00000264433.11:ENST00000504704.6:ENST00000512986.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	64	2	3.09257	3.7561	4.41963	0.0447818	0.0355247	0.140478	0.137983
chrX	133655635	133655734	8112712	0	-	0.333333	(0.33,0.36]	chrX	845480	587	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000692074.1:ENST00000667662.1:ENST00000666017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	74	2	2.00997	3.7560000000000002	5.50203	0.0578928	0.0265895	0.175217	0.111433
chr16	85377441	85377541	6516845	0	+	0.48	(0.45,0.485]	chr16	646391	181	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	3.00299	3.7557549999999997	4.50852	0.0512051	0.0302873	0.148503	0.126768
chr20	62888680	62888778	7585196	0	-	0.44898	(0.419,0.45]	chr20	792848	16	UTR3	UTR3:EXON_MRNA:INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5	protein_coding	protein_coding	protein_coding	protein_coding	3	177	2	3.564	3.75533	3.94666	0.0135082	0.00310116	0.0792526	0.0311614
chr15	98844532	98844632	6195293	0	+	0.32	(0.29,0.33]	chr15	609677	199	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1:ENST00000557938.5:ENST00000560186.5:ENST00000560277.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	44	2	2.71956	3.755275	4.79099	0.061706	0.0442313	0.158854	0.153511
chr10	75621698	75621798	4522377	0	+	0.49	(0.485,0.523]	chr10	432261	200	INTRON	INTRON	LRMDA:ENSG00000286715	ENSG00000148655.15:ENSG00000286715.1	ENST00000611255.5:ENST00000670381.1:ENST00000593817.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	1	44	2	2.85817	3.7550749999999997	4.65198	0.0783889	0.0334631	0.175203	0.133139
chr13	33244375	33244475	5685041	0	-	0.5	(0.485,0.523]	chr13	558196	385	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.85817	3.7550749999999997	4.65198	0.0783889	0.0334631	0.175203	0.133139
chr2	10209611	10209710	718398	0	+	0.515152	(0.485,0.523]	chr2	84006	105	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000381786.7	protein_coding	processed_transcript	protein_coding	processed_transcript	1	44	2	2.85817	3.7550749999999997	4.65198	0.0783889	0.0334631	0.175203	0.133139
chr6	159980788	159980888	3065382	0	+	0.51	(0.485,0.523]	chr6	297908	110	INTRON	INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	2.85817	3.7550749999999997	4.65198	0.0783889	0.0334631	0.175203	0.133139
chr8	75415754	75415854	3845129	0	+	0.49	(0.485,0.523]	chr8	369206	72	INTRON	INTRON	HNF4G	ENSG00000164749.13	ENST00000494318.5:ENST00000396419.5:ENST00000354370.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.85817	3.7550749999999997	4.65198	0.0783889	0.0334631	0.175203	0.133139
chr6	63641575	63641674	2934318	0	+	0.262626	[0,0.29]	chr6	288790	44	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	144	2	3.58263	3.75461	3.92659	0.0076488	0.00196912	0.05827	0.0227838
chr13	33243176	33243276	5685029	0	-	0.36	(0.33,0.36]	chr13	558196	373	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.93873	3.7545400000000004	4.57035	0.0945416	0.0305837	0.188571	0.126768
chr20	3194529	3194629	7515140	0	-	0.52	(0.485,0.523]	chr20	784524	3	SS5_PROX	SS5_PROX:INTRON	DDRGK1	ENSG00000198171.13	ENST00000354488.8:ENST00000470203.1:ENST00000380201.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.60361	3.7545150000000005	4.90542	0.0561086	0.0541523	0.167824	0.154188
chr3	13203925	13204025	1691181	0	-	0.65	(0.58,1]	chr3	176566	394	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.6194	3.7544250000000003	4.88945	0.0388928	0.0202577	0.131324	0.102015
chr2	239339589	239339689	1392106	0	-	0.55	(0.523,0.58]	chr2	148752	151	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	60	2	2.98385	3.7543749999999996	4.5249	0.0505794	0.0266135	0.148456	0.118113
chr3	187066407	187066507	1651657	0	+	0.43	(0.419,0.45]	chr3	173706	14	INTRON	INTRON	ST6GAL1	ENSG00000073849.16	ENST00000169298.8:ENST00000457772.6:ENST00000455441.5:ENST00000427315.5:ENST00000677292.1:ENST00000676633.1:ENST00000448044.5:ENST00000416235.6:ENST00000448449.1:ENST00000442023.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.52086	3.7542649999999997	4.98767	0.0683849	0.0669167	0.193274	0.16272
chr6	15320736	15320836	2857254	0	+	0.31	(0.29,0.33]	chr6	279178	714	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.65466	3.753755	4.85285	0.0567079	0.0498776	0.161215	0.154343
chr6	47290283	47290382	3144311	0	-	0.565657	(0.523,0.58]	chr6	306762	33	INTRON	INTRON	TNFRSF21	ENSG00000146072.6	ENST00000296861.2	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.78812	3.75367	4.71922	0.0721601	0.0160129	0.168159	0.0894586
chr12	3153832	3153932	5159309	0	+	0.42	(0.419,0.45]	chr12	501339	289	INTRON	INTRON	TSPAN9	ENSG00000011105.14	ENST00000537971.5:ENST00000444315.6:ENST00000011898.10:ENST00000649909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	67	2	3.03039	3.753615	4.47684	0.0550674	0.0389508	0.153454	0.142578
chr6	99413516	99413608	3208656	0	-	0.543478	(0.523,0.58]	chr6	311556	4	INTRON	INTRON	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5:ENST00000478777.5:ENST00000492294.5:ENST00000498075.1:ENST00000466057.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	59	2	2.43762	3.753595	5.06957	0.0448011	0.0343548	0.140478	0.134666
chr17	37494620	37494719	6727591	0	+	0.545455	(0.523,0.58]	chr17	676103	26	INTRON	INTRON	DUSP14	ENSG00000276023.5	ENST00000617516.5:ENST00000613659.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.92656	3.75357	4.58058	0.0860403	0.0289226	0.181766	0.124
chr22	20083429	20083527	7686486	0	+	0.561224	(0.523,0.58]	chr22	804119	24	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000457069.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.92656	3.75357	4.58058	0.0860403	0.0289226	0.181766	0.124
chr14	20687302	20687399	5755013	0	+	0.525773	(0.523,0.58]	chr14	564397	22	INTRON	INTRON	ANG:RNASE4:ENSG00000259171	ENSG00000214274.10:ENSG00000258818.4:ENSG00000259171.1	ENST00000336811.10:ENST00000555835.3:ENST00000397995.2:ENST00000553909.1:ENST00000554073.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	2.19842	3.753185	5.30795	0.0551586	0.0315825	0.169218	0.120781
chr16	619457	619556	6368588	0	+	0.555556	(0.523,0.58]	chr16	628044	8	INTRON	INTRON	RAB40C	ENSG00000197562.10	ENST00000535977.5:ENST00000569575.5:ENST00000539661.5:ENST00000566290.5:ENST00000248139.8:ENST00000568586.5:ENST00000538492.5:ENST00000565511.5:ENST00000509637.6:ENST00000563109.1:ENST00000564703.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	2.19842	3.753185	5.30795	0.0551586	0.0315825	0.169218	0.120781
chr7	139663789	139663889	3722783	0	-	0.54	(0.523,0.58]	chr7	357498	317	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.19842	3.753185	5.30795	0.0551586	0.0315825	0.169218	0.120781
chr1	43545764	43545863	106893	0	+	0.555556	(0.523,0.58]	chr1	13182	2	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000496043.5:ENST00000481019.5:ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.54344	3.7527049999999997	4.96197	0.0599121	0.0521137	0.177269	0.148503
chr1	43595075	43595174	107401	0	+	0.565657	(0.523,0.58]	chr1	13240	21	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.54344	3.7527049999999997	4.96197	0.0599121	0.0521137	0.177269	0.148503
chr10	75506887	75506987	4521227	0	+	0.56	(0.523,0.58]	chr10	432249	553	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.54344	3.7527049999999997	4.96197	0.0599121	0.0521137	0.177269	0.148503
chr12	132545411	132545511	5353070	0	+	0.56	(0.523,0.58]	chr12	523670	171	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.54344	3.7527049999999997	4.96197	0.0599121	0.0521137	0.177269	0.148503
chr16	16184558	16184658	6556717	0	-	0.53	(0.523,0.58]	chr16	653133	2	SS5_PROX	SS5_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	2.54344	3.7527049999999997	4.96197	0.0599121	0.0521137	0.177269	0.148503
chr2	72966636	72966736	1188458	0	-	0.56	(0.523,0.58]	chr2	128792	50	INTRON	INTRON	SFXN5	ENSG00000144040.13	ENST00000272433.7:ENST00000461352.5:ENST00000474528.5:ENST00000495208.5:ENST00000482289.5:ENST00000490056.5:ENST00000411783.5:ENST00000410065.5:ENST00000482542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.54344	3.7527049999999997	4.96197	0.0599121	0.0521137	0.177269	0.148503
chr20	62158271	62158371	7505926	0	+	0.54	(0.523,0.58]	chr20	782520	2	SS3_PROX	SS3_PROX:INTRON	SS18L1	ENSG00000184402.15	ENST00000331758.8:ENST00000450482.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.54344	3.7527049999999997	4.96197	0.0599121	0.0521137	0.177269	0.148503
chr3	58009455	58009555	1483048	0	+	0.54	(0.523,0.58]	chr3	159572	2	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	94	2	2.05666	3.752555	5.44845	0.0839201	0.00361636	0.181766	0.0342681
chr1	40422760	40422854	100731	0	+	0.585106	(0.58,1]	chr1	11989	8	UTR3	UTR3:EXON_MRNA	SMAP2	ENSG00000084070.12	ENST00000372718.8:ENST00000372708.5:ENST00000614549.4:ENST00000539317.2	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.55596	3.75239	4.94882	0.0534085	0.0354433	0.167062	0.127188
chr12	132538343	132538442	5352999	0	+	0.666667	(0.58,1]	chr12	523670	100	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.55596	3.75239	4.94882	0.0534085	0.0354433	0.167062	0.127188
chr12	132546606	132546705	5353082	0	+	0.676768	(0.58,1]	chr12	523670	183	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.55596	3.75239	4.94882	0.0534085	0.0354433	0.167062	0.127188
chr20	62274501	62274601	7506853	0	+	0.59	(0.58,1]	chr20	782712	7	INTRON	INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.55596	3.75239	4.94882	0.0534085	0.0354433	0.167062	0.127188
chr21	45430647	45430747	7630569	0	+	0.61	(0.58,1]	chr21	797656	248	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.55596	3.75239	4.94882	0.0534085	0.0354433	0.167062	0.127188
chr20	34472510	34472610	7461893	0	+	0.37	(0.36,0.39]	chr20	776789	6	INTRON	INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000262650.10:ENST00000665346.1:ENST00000483727.5:ENST00000461661.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	2.67862	3.7521699999999996	4.82572	0.0751666	0.0511249	0.172839	0.1648
chr22	25155430	25155530	7700589	0	+	0.39	(0.36,0.39]	chr22	805914	426	INTRON	INTRON	KIAA1671	ENSG00000197077.14	ENST00000358431.8:ENST00000406486.8:ENST00000494730.2:ENST00000401395.1:ENST00000637069.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	2.67862	3.7521699999999996	4.82572	0.0751666	0.0511249	0.172839	0.1648
chr2	65422265	65422365	1172078	0	-	0.44	(0.419,0.45]	chr2	127582	417	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	3	189	2	3.40928	3.75195	4.09462	0.0162363	0.00248506	0.0873195	0.0267262
chr8	8362080	8362179	3934227	0	-	0.494949	(0.485,0.523]	chr8	376133	221	INTRON	INTRON	PRAG1	ENSG00000275342.5	ENST00000615670.5:ENST00000622241.1	protein_coding	protein_coding	protein_coding	protein_coding	2	119	2	3.66621	3.75149	3.83677	0.0166798	0.00360381	0.0884836	0.0342681
chr2	149594535	149594634	919891	0	+	0.40404	(0.39,0.419]	chr2	102788	1	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	2	65	2	2.67784	3.7511150000000004	4.82439	0.0762206	0.0233188	0.174484	0.110098
chr10	28566223	28566323	4469747	0	+	0.37	(0.36,0.39]	chr10	427649	278	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	2.73813	3.7510149999999998	4.7639	0.0811309	0.0459393	0.177951	0.154743
chr15	56983658	56983758	6110993	0	+	0.38	(0.36,0.39]	chr15	601587	622	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	2.73813	3.7510149999999998	4.7639	0.0811309	0.0459393	0.177951	0.154743
chr2	179125058	179125157	1326998	0	-	0.555556	(0.523,0.58]	chr2	141646	1	INTRON	INTRON	SESTD1	ENSG00000187231.14	ENST00000428443.8:ENST00000335289.5:ENST00000426988.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	56	2	2.7389	3.7509	4.7629	0.072318	0.0167014	0.168347	0.0917029
chr20	49646271	49646367	7575497	0	-	0.46875	(0.45,0.485]	chr20	791518	23	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	2	122	2	3.14934	3.75077	4.3522	0.0410767	9.98881e-4	0.136301	0.0142216
chr6	1939589	1939688	3082270	0	-	0.30303	(0.29,0.33]	chr6	299487	87	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000531690.5:ENST00000530459.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	2.48102	3.75072	5.02042	0.100436	0.0103902	0.196131	0.0682598
chr10	100971933	100972028	4569842	0	+	0.557895	(0.523,0.58]	chr10	436226	17	INTRON	INTRON	SEMA4G	ENSG00000095539.15	ENST00000519649.5:ENST00000521006.5:ENST00000518124.5:ENST00000518244.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	61	2	2.71726	3.7505499999999996	4.78384	0.0663135	0.0188054	0.162385	0.0980631
chr7	66770222	66770322	3383120	0	+	0.4	(0.39,0.419]	chr7	326387	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5:ENST00000284957.9:ENST00000450873.6:ENST00000442563.5:ENST00000439720.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.67669	3.75054	4.82439	0.0762206	0.051368	0.174484	0.165482
chrX	154550287	154550387	7962344	0	+	0.47	(0.45,0.485]	chrX	833729	18	INTRON	INTRON	IKBKG	ENSG00000269335.7	ENST00000440286.6:ENST00000422680.6:ENST00000618670.4:ENST00000612051.1:ENST00000445622.6:ENST00000686378.1:ENST00000413620.6:ENST00000689906.1:ENST00000693029.1:ENST00000687445.1:ENST00000686774.1:ENST00000692816.1:ENST00000594239.6:ENST00000692948.1:ENST00000615874.4:ENST00000619941.4:ENST00000617207.4:ENST00000611176.4:ENST00000615186.5:ENST00000611071.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.92826	3.75038	4.5725	0.0926859	0.0301249	0.188571	0.126768
chr11	70657131	70657231	5060846	0	-	0.49	(0.485,0.523]	chr11	492672	23	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	54	2	2.5366	3.750105	4.96361	0.0953348	0.0112713	0.189038	0.071709
chr21	45444332	45444432	7630706	0	+	0.58	(0.523,0.58]	chr21	797656	385	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	2	117	2	3.53814	3.7499849999999997	3.96183	0.020829	0.00255427	0.0990379	0.0273114
chr10	47536477	47536577	4680547	0	-	0.33	(0.29,0.33]	chr10	446443	126	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	1	44	2	2.84122	3.74995	4.65868	0.0735584	0.0350501	0.17026	0.137151
chr3	149836834	149836934	1595544	0	+	0.32	(0.29,0.33]	chr3	168720	139	INTRON	INTRON	RNF13	ENSG00000082996.20	ENST00000344229.7:ENST00000470151.5:ENST00000466478.5:ENST00000491086.5:ENST00000392894.8:ENST00000467977.5:ENST00000474348.5:ENST00000467996.1:ENST00000468648.5:ENST00000459632.5:ENST00000466795.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	2.84122	3.74995	4.65868	0.0735584	0.0350501	0.17026	0.137151
chr6	43304345	43304412	2919186	0	+	0.522388	(0.485,0.523]	chr6	287082	2	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC22A7	ENSG00000137204.15	ENST00000372585.10:ENST00000372589.7:ENST00000372574.7	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	2.81545	3.7498949999999995	4.68434	0.0647139	0.0200045	0.162218	0.100864
chr1	24762607	24762707	63598	0	+	0.46	(0.45,0.485]	chr1	6854	166	INTRON	INTRON	CLIC4	ENSG00000169504.15	ENST00000488683.1:ENST00000497755.1:ENST00000489758.1:ENST00000374379.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	2.49029	3.74944	5.00859	0.0676934	0.052901	0.193219	0.14912
chr10	79164230	79164330	4532999	0	+	0.48	(0.45,0.485]	chr10	432438	17	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.49029	3.74944	5.00859	0.0676934	0.052901	0.193219	0.14912
chr2	235534636	235534736	1062944	0	+	0.47	(0.45,0.485]	chr2	115656	97	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.49029	3.74944	5.00859	0.0676934	0.052901	0.193219	0.14912
chr22	25512514	25512613	7701672	0	+	0.474747	(0.45,0.485]	chr22	805986	10	INTRON	INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000686640.1:ENST00000509460.3	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	45	2	2.49029	3.74944	5.00859	0.0676934	0.052901	0.193219	0.14912
chr6	2429386	2429486	2826231	0	+	0.47	(0.45,0.485]	chr6	277315	159	INTRON	INTRON	GMDS-DT	ENSG00000250903.10	ENST00000657072.1:ENST00000659523.1:ENST00000659643.1:ENST00000660978.1:ENST00000691547.1:ENST00000654526.1:ENST00000670895.1:ENST00000657589.1:ENST00000607519.2:ENST00000662000.1	lncRNA	lncRNA	lncRNA	lncRNA	1	45	2	2.49029	3.74944	5.00859	0.0676934	0.052901	0.193219	0.14912
chr3	146116128	146116227	1936545	0	-	0.373737	(0.36,0.39]	chr3	197016	53	INTRON	INTRON	PLOD2	ENSG00000152952.12	ENST00000282903.10:ENST00000360060.7:ENST00000494950.5:ENST00000469350.5:ENST00000480704.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	91	2	2.63629	3.74939	4.86249	0.0514602	0.0181775	0.148503	0.0955836
chr4	77913964	77914063	2065472	0	+	0.393939	(0.39,0.419]	chr4	211113	42	INTRON	INTRON	MRPL1	ENSG00000169288.18	ENST00000315567.13:ENST00000502384.3:ENST00000504901.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.7362	3.749385	4.76257	0.0822354	0.0461646	0.179396	0.155334
chr6	16619416	16619516	3103033	0	-	0.4	(0.39,0.419]	chr6	300871	29	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6:ENST00000495178.1:ENST00000646259.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.7362	3.749385	4.76257	0.0822354	0.0461646	0.179396	0.155334
chr16	87855431	87855531	6657028	0	-	0.6	(0.58,1]	chr16	666007	32	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	2	103	2	3.63877	3.7493499999999997	3.85993	0.0127766	0.00251049	0.0769397	0.026941
chr17	4341960	4342058	6842207	0	-	0.418367	(0.39,0.419]	chr17	692473	63	INTRON	INTRON	UBE2G1	ENSG00000132388.13	ENST00000396981.7:ENST00000572484.5:ENST00000574633.5:ENST00000571980.1:ENST00000574059.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.61462	3.7491399999999997	4.88366	0.0707789	0.0572875	0.174149	0.168159
chr13	97340023	97340122	5631984	0	+	0.424242	(0.419,0.45]	chr13	553188	52	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	133	2	3.08499	3.7490949999999996	4.4132	0.0509743	0.00110053	0.148503	0.015138800000000001
chr16	85375742	85375842	6516828	0	+	0.62	(0.58,1]	chr16	646391	164	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.83384	3.7489999999999997	4.66416	0.0529065	0.0144381	0.14912	0.0833845
chr20	36573745	36573845	7471304	0	+	0.66	(0.58,1]	chr20	777912	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TGIF2	ENSG00000118707.11	ENST00000373874.6:ENST00000373872.9:ENST00000650844.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.38295	3.74825	5.11355	0.0730701	0.0271806	0.199669	0.112113
chr6	159980988	159981088	3065384	0	+	0.51	(0.485,0.523]	chr6	297908	112	INTRON	INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	2.91537	3.7481850000000003	4.581	0.085711	0.0298565	0.181766	0.126732
chr16	50598697	50598797	6451914	0	+	0.68	(0.58,1]	chr16	639902	401	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	136	2	3.55862	3.748175	3.93773	0.00708574	0.00169503	0.0558168	0.0204875
chr17	72534377	72534477	6963654	0	-	0.44	(0.419,0.45]	chr17	710388	3	SS3_PROX	SS3_PROX:INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	47	2	2.8723	3.747515	4.62273	0.103601	0.0367198	0.197541	0.139793
chr22	35997151	35997251	7805513	0	-	0.43	(0.419,0.45]	chr22	817798	356	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.8723	3.747515	4.62273	0.103601	0.0367198	0.197541	0.139793
chr13	28139187	28139287	5555508	0	+	0.68	(0.58,1]	chr13	548207	1	SS5_PROX	SS5_PROX:INTRON	PAN3	ENSG00000152520.14	ENST00000503791.5:ENST00000380958.8:ENST00000399613.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	52	2	2.91446	3.747355	4.58025	0.0464528	0.0172566	0.143232	0.0923809
chr18	6042041	6042141	7110131	0	-	0.51	(0.485,0.523]	chr18	723828	94	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000400105.6:ENST00000317931.12:ENST00000400104.7	protein_coding	protein_coding	protein_coding	protein_coding	3	164	2	3.29351	3.7473150000000004	4.20112	0.0151888	0.00137422	0.084474	0.0177822
chr15	84760420	84760520	6174100	0	+	0.38	(0.36,0.39]	chr15	607314	114	INTRON	INTRON	ZNF592	ENSG00000166716.10	ENST00000560079.7	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.79528	3.7473	4.69932	0.0877431	0.0413701	0.183437	0.148333
chr3	51666687	51666786	1472207	0	+	0.363636	(0.36,0.39]	chr3	157989	34	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.79528	3.7473	4.69932	0.0877431	0.0413701	0.183437	0.148333
chr8	18758985	18759085	3949559	0	-	0.37	(0.36,0.39]	chr8	377204	750	INTRON	INTRON	PSD3	ENSG00000156011.18	ENST00000327040.13:ENST00000440756.4:ENST00000286485.12:ENST00000523619.5:ENST00000518315.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.79528	3.7473	4.69932	0.0877431	0.0413701	0.183437	0.148333
chr11	378322	378421	4784083	0	+	0.636364	(0.58,1]	chr11	457781	6	INTRON	INTRON	B4GALNT4	ENSG00000182272.12	ENST00000329962.11	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.09894	3.7472	5.39546	0.0411332	0.0168207	0.147756	0.0884836
chr8	99289048	99289148	3879976	0	+	0.32	(0.29,0.33]	chr8	371782	134	INTRON	INTRON	VPS13B	ENSG00000132549.20	ENST00000496144.5:ENST00000683334.1:ENST00000357162.7:ENST00000358544.7:ENST00000683619.1:ENST00000683869.1:ENST00000682153.1:ENST00000682358.1:ENST00000682145.1:ENST00000355155.6:ENST00000682234.1:ENST00000683486.1:ENST00000522802.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	66	2	2.98129	3.7471500000000004	4.51301	0.0885563	0.0105264	0.183874	0.0691044
chr2	239267887	239267987	1391387	0	-	0.38	(0.36,0.39]	chr2	148740	163	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	46	2	2.5517	3.7468199999999996	4.94194	0.064883	0.0637554	0.184651	0.162218
chr17	57402069	57402168	6761228	0	+	0.494949	(0.485,0.523]	chr17	682121	2	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	82	2	2.05872	3.746625	5.43453	0.0390426	0.0258944	0.142605	0.109555
chr19	46976192	46976292	7275335	0	+	0.34	(0.33,0.36]	chr19	747275	384	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	61	2	2.33388	3.746595	5.15931	0.0452305	0.043896	0.154539	0.139792
chr1	11812561	11812660	28589	0	+	0.454545	(0.45,0.485]	chr1	3422	50	INTRON	INTRON	CLCN6	ENSG00000011021.23	ENST00000312413.10:ENST00000346436.11:ENST00000376497.7:ENST00000400892.3:ENST00000376496.4:ENST00000376492.3:ENST00000376490.7:ENST00000376491.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	80	2	2.36336	3.74637	5.12938	0.0724971	0.00873194	0.168755	0.0612699
chr2	25237005	25237105	1104897	0	-	0.59	(0.58,1]	chr2	120665	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	DNMT3A	ENSG00000119772.19	ENST00000264709.7:ENST00000321117.10:ENST00000380746.8:ENST00000380756.7:ENST00000683760.1:ENST00000683393.1:ENST00000402667.1:ENST00000474887.6:ENST00000482935.5:ENST00000491288.5:ENST00000466601.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	54	2	2.43115	3.7459249999999997	5.0607	0.0309513	0.029633	0.127822	0.116079
chr5	143278503	143278598	2778026	0	-	0.389474	(0.36,0.39]	chr5	272690	7	UTR3	UTR3:EXON_MRNA	NR3C1	ENSG00000113580.15	ENST00000343796.6:ENST00000394464.7:ENST00000415690.6	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.62895	3.7457200000000004	4.86249	0.0909522	0.0181775	0.187477	0.0955836
chr17	72920947	72921047	6967498	0	-	0.41	(0.39,0.419]	chr17	710518	708	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	2.7933500000000002	3.7456650000000002	4.69798	0.088901	0.0415789	0.183874	0.148959
chr20	6025770	6025870	7425877	0	+	0.44	(0.419,0.45]	chr20	773616	2	SS3_PROX	SS3_PROX:INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	76	2	2.0464	3.745435	5.44447	0.0564353	0.0364384	0.171982	0.128173
chr17	4852818	4852918	6672081	0	+	0.63	(0.58,1]	chr17	668609	188	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	112	2	3.44157	3.745305	4.04904	0.00760198	0.0056478	0.0561937	0.0495171
chr21	45451025	45451125	7630773	0	+	0.68	(0.58,1]	chr21	797656	452	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.66286	3.745195	4.82753	0.0427798	0.0183006	0.13762	0.0958973
chr1	12586635	12586734	402469	0	-	0.414141	(0.39,0.419]	chr1	46222	56	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	2.54977	3.745185	4.9406	0.0658437	0.0640389	0.184676	0.162385
chr3	46957908	46958008	1758297	0	-	0.4	(0.39,0.419]	chr3	181164	165	INTRON	INTRON	CCDC12	ENSG00000160799.12	ENST00000425441.5:ENST00000683445.1:ENST00000292314.6:ENST00000605358.5:ENST00000488069.5:ENST00000603885.5:ENST00000446836.5:ENST00000494655.5:ENST00000604164.5:ENST00000604181.1:ENST00000605875.1:ENST00000460035.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	46	2	2.54977	3.745185	4.9406	0.0658437	0.0640389	0.184676	0.162385
chr6	98920904	98921003	3207944	0	-	0.262626	[0,0.29]	chr6	311438	28	INTRON	INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.14389	3.744685	5.34548	0.0595238	0.0197148	0.176818	0.0958249
chr3	172090582	172090682	1627973	0	+	0.38	(0.36,0.39]	chr3	170535	433	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	86	2	1.92271	3.744625	5.56654	0.0560291	0.0272676	0.171776	0.112327
chr2	162029833	162029933	1293890	0	-	0.4	(0.39,0.419]	chr2	138907	50	EXON_MRNA	EXON_MRNA:INTRON	DPP4	ENSG00000197635.11	ENST00000676810.1:ENST00000360534.8:ENST00000678566.1:ENST00000678668.1:ENST00000678583.1:ENST00000676624.1:ENST00000679104.1:ENST00000676479.1:ENST00000676996.1:ENST00000677212.1:ENST00000678740.1:ENST00000678522.1:ENST00000434918.6:ENST00000676768.1:ENST00000490286.5:ENST00000416189.6:ENST00000494507.2:ENST00000461836.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	62	2	2.29339	3.7445899999999996	5.19579	0.0501037	0.0469937	0.161731	0.143232
chr17	6920780	6920880	6675879	0	+	0.54	(0.523,0.58]	chr17	669364	187	INTRON	INTRON	ALOX12P2	ENSG00000262943.8	ENST00000574183.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	213	2	3.48759	3.74433	4.00107	0.0107334	6.64412e-4	0.0702888	0.0106995
chr1	1220862	1220960	380395	0	-	0.55102	(0.523,0.58]	chr1	42840	20	EXON_MRNA	EXON_MRNA:INTRON	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000494748.1:ENST00000403997.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	2.98158	3.743755	4.50593	0.094303	0.0258432	0.188571	0.116361
chr10	75765901	75766000	4523824	0	+	0.545455	(0.523,0.58]	chr10	432277	223	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.98158	3.743755	4.50593	0.094303	0.0258432	0.188571	0.116361
chr11	70802431	70802530	5062307	0	-	0.59596	(0.58,1]	chr11	492707	35	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5:ENST00000460048.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	2.40217	3.743755	5.08534	0.100879	0.00549379	0.196131	0.0454065
chr20	62922752	62922851	7585562	0	-	0.525253	(0.523,0.58]	chr20	792927	80	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.98158	3.743755	4.50593	0.094303	0.0258432	0.188571	0.116361
chr10	45929464	45929564	4678871	0	-	0.36	(0.33,0.36]	chr10	446223	129	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000688192.1:ENST00000686367.1:ENST00000693310.1:ENST00000417555.2:ENST00000687844.1:ENST00000687550.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	45	2	2.65202	3.7436999999999996	4.83538	0.0679743	0.0523564	0.167062	0.164413
chr7	103966247	103966347	3663461	0	-	0.61	(0.58,1]	chr7	353511	487	INTRON	INTRON	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1:ENST00000681401.1:ENST00000679689.1:ENST00000681182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	57	2	2.86246	3.743245	4.62403	0.0578275	0.0112778	0.154343	0.0717097
chr10	38055360	38055460	4478510	0	+	0.39	(0.36,0.39]	chr10	428212	9	CDS	CDS:EXON_MRNA:INTRON	ZNF33A	ENSG00000189180.16	ENST00000307441.13:ENST00000374618.7:ENST00000628825.2:ENST00000458705.6:ENST00000432900.7:ENST00000469037.2	protein_coding	protein_coding	protein_coding	protein_coding	2	126	2	3.40591	3.743155	4.0804	0.0298	0.0024203	0.11661	0.0261589
chr21	31717614	31717714	7649987	0	-	0.22	[0,0.29]	chr21	800068	109	INTRON	INTRON	SCAF4	ENSG00000156304.15	ENST00000286835.12:ENST00000399804.5:ENST00000434667.3:ENST00000485790.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	2.79702	3.742785	4.68855	0.0554735	0.0360966	0.154188	0.139793
chr7	29967212	29967312	3564626	0	-	0.29	[0,0.29]	chr7	343990	115	INTRON	INTRON	SCRN1	ENSG00000136193.17	ENST00000426154.5:ENST00000242059.10:ENST00000425819.6:ENST00000409497.5:ENST00000434476.6:ENST00000421434.5:ENST00000494620.1:ENST00000438497.5:ENST00000409570.3:ENST00000631335.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.66408	3.74252	4.82096	0.0466601	0.0456837	0.156477	0.142336
chr16	58539182	58539267	6598968	0	-	0.517647	(0.485,0.523]	chr16	659986	3	SS3_PROX	SS3_PROX:INTRON	CNOT1	ENSG00000125107.19	ENST00000317147.10:ENST00000569240.5:ENST00000567188.5:ENST00000568917.1:ENST00000563283.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	59	2	2.13331	3.74249	5.35167	0.0626854	0.0294163	0.181933	0.116079
chr7	6699267	6699363	3542705	0	-	0.510417	(0.485,0.523]	chr7	342314	11	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000404360.5:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.13331	3.74249	5.35167	0.0626854	0.0294163	0.181933	0.116079
chr2	152379101	152379201	925902	0	+	0.49	(0.485,0.523]	chr2	103058	430	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	3	159	2	3.49585	3.742365	3.98888	0.0222996	7.07662e-4	0.102226	0.0111742
chr2	148407372	148407472	917240	0	+	0.3	(0.29,0.33]	chr2	102591	141	INTRON	INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000638043.2:ENST00000478804.3:ENST00000627651.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.51537	3.742255	4.96914	0.0639396	0.0481918	0.184676	0.144601
chrX	154400115	154400202	7961523	0	+	0.45977	(0.45,0.485]	chrX	833384	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RPL10	ENSG00000147403.18	ENST00000492572.5:ENST00000436473.5:ENST00000344746.8:ENST00000369817.7:ENST00000491035.5:ENST00000489200.5:ENST00000458500.5:ENST00000485196.5:ENST00000482732.1:ENST00000467168.5:ENST00000406022.6:ENST00000451365.1:ENST00000428169.1:ENST00000427682.5:ENST00000449494.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	55	2	2.53391	3.742235	4.95056	0.0985287	0.0127826	0.193064	0.0773423
chr22	50223178	50223274	7827078	0	-	0.53125	(0.523,0.58]	chr22	821153	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	TUBGCP6	ENSG00000128159.12	ENST00000498611.5:ENST00000439308.6:ENST00000248846.10:ENST00000491449.5:ENST00000489511.5:ENST00000473946.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	158	2	2.88927	3.7416899999999997	4.59411	0.0306051	4.40994e-4	0.119102	0.00800597
chr16	50622802	50622902	6452157	0	+	0.59	(0.58,1]	chr16	639918	7	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	6	254	2	2.95584	3.7415399999999996	4.52724	0.0109932	7.89587e-5	0.0708586	0.00228911
chr16	89292199	89292299	6659727	0	-	0.57	(0.523,0.58]	chr16	666647	4	SS3_PROX	SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	330	2	3.64956	3.7414	3.83324	0.0079537	2.68031e-4	0.0596361	0.00559258
chr22	32820594	32820694	7717815	0	+	0.57	(0.523,0.58]	chr22	807776	181	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	1	61	2	3.04682	3.741395	4.43597	0.0459721	0.0313935	0.142664	0.127822
chr3	12940672	12940772	1688534	0	-	0.59	(0.58,1]	chr3	176510	36	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	2.9908	3.74098	4.49116	0.0409591	0.0207449	0.136191	0.102713
chr16	67075272	67075372	6470368	0	+	0.38	(0.36,0.39]	chr16	642203	81	INTRON	INTRON	CBFB	ENSG00000067955.15	ENST00000651988.1:ENST00000652360.1:ENST00000561924.6:ENST00000290858.11:ENST00000412916.7:ENST00000564034.6:ENST00000650873.1:ENST00000563939.3:ENST00000565389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	2.85025	3.740975	4.6317	0.0950937	0.0373341	0.189021	0.139793
chr16	83920762	83920862	6513132	0	+	0.39	(0.36,0.39]	chr16	646141	54	UTR3	UTR3:EXON_MRNA:INTRON	MLYCD	ENSG00000103150.7	ENST00000262430.6:ENST00000561562.5:ENST00000566309.2:ENST00000563312.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.85025	3.740975	4.6317	0.0950937	0.0373341	0.189021	0.139793
chr3	66035795	66035895	1815840	0	-	0.47	(0.45,0.485]	chr3	187318	267	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	264	2	3.69815	3.740175	3.7822	0.00792009	7.39647e-4	0.0596361	0.0115136
chr5	1102211	1102311	2608873	0	-	0.58	(0.523,0.58]	chr5	259667	76	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.57767	3.7399449999999996	4.90222	0.090356	0.0125132	0.186369	0.0765738
chr2	241721409	241721508	1078631	0	+	0.636364	(0.58,1]	chr2	117259	14	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ING5	ENSG00000168395.16	ENST00000636051.1:ENST00000313552.11:ENST00000482774.5:ENST00000406941.5:ENST00000445620.5:ENST00000493578.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	101	2	3.3216	3.73942	4.15724	0.0230709	0.00107173	0.102982	0.0148869
chr3	65916867	65916967	1814647	0	-	0.29	[0,0.29]	chr3	187310	93	INTRON	INTRON	MAGI1:MAGI1-IT1	ENSG00000151276.24:ENSG00000272610.1	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5:ENST00000460754.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	3	68	2	2.13325	3.7393650000000003	5.34548	0.0412365	0.0197148	0.148098	0.0958249
chr11	34343405	34343505	5025263	0	-	0.41	(0.39,0.419]	chr11	486052	1010	INTRON	INTRON	ABTB2	ENSG00000166016.6	ENST00000435224.3	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.84832	3.739345	4.63037	0.0963077	0.0375279	0.189169	0.139823
chr6	154749711	154749810	3044275	0	+	0.393939	(0.39,0.419]	chr6	296626	73	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.84832	3.739345	4.63037	0.0963077	0.0375279	0.189169	0.139823
chr20	4858098	4858196	7517122	0	-	0.520408	(0.485,0.523]	chr20	784814	5	INTRON	INTRON	SLC23A2	ENSG00000089057.15	ENST00000379333.5:ENST00000338244.6	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.57989	3.739295	4.8987	0.0899526	0.0129327	0.185791	0.0778105
chr15	67050507	67050607	6307995	0	-	0.63	(0.58,1]	chr15	621983	482	INTRON	INTRON	ENSG00000259347	ENSG00000259347.8	ENST00000692307.1:ENST00000558071.2	lncRNA	lncRNA	lncRNA	lncRNA	3	104	2	2.73501	3.739235	4.74346	0.0216297	0.0121457	0.100615	0.0754623
chr21	34843399	34843499	7655378	0	-	0.35	(0.33,0.36]	chr21	801030	84	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000469087.1:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	67	2	2.90791	3.7391300000000003	4.57035	0.0945416	0.0135414	0.188571	0.0811697
chr3	58131740	58131833	1484306	0	+	0.473118	(0.45,0.485]	chr3	159714	10	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	FLNB	ENSG00000136068.16	ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000493452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	425	2	3.40361	3.7389850000000004	4.07436	0.00644642	3.15577e-4	0.0530227	0.00631176
chr16	21509033	21509133	6564730	0	-	0.63	(0.58,1]	chr16	654787	25	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	41	2	2.47204	3.7389449999999997	5.00585	0.0623526	0.0323732	0.181127	0.121593
chr20	46377663	46377762	7567487	0	-	0.606061	(0.58,1]	chr20	790760	8	INTRON	INTRON	ELMO2	ENSG00000062598.18	ENST00000290246.11:ENST00000372176.5:ENST00000396391.5:ENST00000352077.6:ENST00000425546.5:ENST00000462491.5:ENST00000488853.5:ENST00000450812.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.47204	3.7389449999999997	5.00585	0.0623526	0.0323732	0.181127	0.121593
chr8	30420551	30420650	3788525	0	+	0.434343	(0.419,0.45]	chr8	364885	222	INTRON	INTRON	RBPMS	ENSG00000157110.16	ENST00000320203.8:ENST00000339877.8:ENST00000287771.9:ENST00000397323.9:ENST00000517860.5:ENST00000520161.5:ENST00000523115.5:ENST00000519647.5:ENST00000521816.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	146	2	3.39073	3.7388899999999996	4.08705	0.0128682	0.0106987	0.0778066	0.0701493
chr6	147865104	147865204	3030820	0	+	0.4	(0.39,0.419]	chr6	295875	1277	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	1	46	2	2.48186	3.73862	4.99538	0.0717596	0.0613573	0.199212	0.158506
chr7	158738241	158738334	3742110	0	-	0.430108	(0.419,0.45]	chr7	359806	7	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000435514.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	74	2	3.28483	3.7384899999999996	4.19215	0.0617113	0.038131	0.18013	0.131324
chr16	1528575	1528674	6533134	0	-	0.646465	(0.58,1]	chr16	649069	14	INTRON	INTRON	IFT140	ENSG00000187535.14	ENST00000426508.7:ENST00000361339.9:ENST00000397417.6:ENST00000565298.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.78186	3.73848	4.6951	0.0521567	0.0342923	0.148503	0.13449
chr19	33421835	33421935	7365056	0	-	0.61	(0.58,1]	chr19	763415	78	INTRON	INTRON	PEPD	ENSG00000124299.15	ENST00000244137.12:ENST00000588328.6:ENST00000397032.8:ENST00000436370.7:ENST00000651901.1:ENST00000590731.6:ENST00000609145.5:ENST00000588719.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	2.78186	3.73848	4.6951	0.0521567	0.0342923	0.148503	0.13449
chr17	8462776	8462866	6679205	0	+	0.5	(0.485,0.523]	chr17	670512	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NDEL1	ENSG00000166579.16	ENST00000334527.12:ENST00000585098.5:ENST00000380025.8:ENST00000402554.7:ENST00000581679.1:ENST00000583683.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	2.97038	3.73836	4.50634	0.0939553	0.0267011	0.188571	0.118343
chr18	667520	667620	6991761	0	+	0.51	(0.485,0.523]	chr18	715260	48	INTRON	INTRON	TYMS	ENSG00000176890.16	ENST00000323274.15:ENST00000579128.1:ENST00000323224.7:ENST00000323250.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	2.97038	3.73836	4.50634	0.0939553	0.0267011	0.188571	0.118343
chr7	2047312	2047412	3530705	0	-	0.51	(0.485,0.523]	chr7	340995	323	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.97038	3.73836	4.50634	0.0939553	0.0267011	0.188571	0.118343
chr16	85394034	85394134	6517011	0	+	0.64	(0.58,1]	chr16	646391	347	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	3	82	2	2.01789	3.7383049999999995	5.45872	0.0762182	0.00211999	0.174484	0.0239744
chr1	228155952	228156051	358146	0	+	0.626263	(0.58,1]	chr1	40434	56	INTRON	INTRON	GJC2	ENSG00000198835.4	ENST00000366714.3	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.6577	3.73816	4.81862	0.0695799	0.0102696	0.167028	0.0678072
chr14	105216261	105216359	6058160	0	-	0.632653	(0.58,1]	chr14	594783	30	INTRON	INTRON	BRF1	ENSG00000185024.18	ENST00000547530.7:ENST00000379937.6:ENST00000392557.8:ENST00000446501.6:ENST00000635152.1:ENST00000547374.5:ENST00000551787.5:ENST00000619151.4:ENST00000327359.7:ENST00000440513.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	49	2	2.6577	3.73816	4.81862	0.0695799	0.0102696	0.167028	0.0678072
chr7	47471511	47471611	3588523	0	-	0.62	(0.58,1]	chr7	346123	184	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.6577	3.73816	4.81862	0.0695799	0.0102696	0.167028	0.0678072
chr7	55445158	55445258	3591343	0	-	0.47	(0.45,0.485]	chr7	346401	86	INTRON	INTRON	VOPP1	ENSG00000154978.13	ENST00000462326.5	protein_coding	processed_transcript	protein_coding	processed_transcript	7	376	2	3.16082	3.737915	4.31501	0.0145106	9.8758e-5	0.0823104	0.00271058
chr11	70793445	70793545	5062216	0	-	0.29	[0,0.29]	chr11	492701	756	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.59271	3.7377849999999997	4.88286	0.0532832	0.041613	0.167062	0.136301
chr15	24987194	24987293	6063717	0	+	0.323232	(0.29,0.33]	chr15	595387	49	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	4	211	2	3.49026	3.7377599999999997	3.98526	0.00999416	7.45635e-4	0.0674203	0.0115813
chr6	24185823	24185923	3108599	0	-	0.5	(0.485,0.523]	chr6	301405	68	INTRON	INTRON	DCDC2	ENSG00000146038.12	ENST00000378454.8:ENST00000378450.6	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.95352	3.73747	4.52142	0.0528263	0.0273555	0.14912	0.119337
chr1	43563807	43563907	107077	0	+	0.63	(0.58,1]	chr1	13192	95	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	102	2	3.61485	3.73739	3.85993	0.0133763	0.00251049	0.0790342	0.026941
chr21	42908663	42908763	7622693	0	+	0.43	(0.419,0.45]	chr21	796494	4	SS3_PROX	SS3_PROX:INTRON	NDUFV3	ENSG00000160194.18	ENST00000460259.1:ENST00000340344.4:ENST00000354250.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	64	2	2.54153	3.737215	4.9329	0.0716557	0.0316792	0.168159	0.128518
chr10	79168924	79169024	4533046	0	+	0.5	(0.485,0.523]	chr10	432438	64	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.45723	3.73721	5.01719	0.0700289	0.0480495	0.195209	0.144601
chr17	38747778	38747878	6895654	0	-	0.74	(0.58,1]	chr17	700407	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.84993	3.73698	4.62403	0.0578275	0.0297842	0.154343	0.126591
chr19	2050400	2050500	7308299	0	-	0.66	(0.58,1]	chr19	753575	2	SS5_PROX	SS5_PROX:INTRON	MKNK2	ENSG00000099875.16	ENST00000309340.11:ENST00000250896.9:ENST00000586828.5:ENST00000589509.5:ENST00000589534.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.71042	3.73663	4.76284	0.0471737	0.0396128	0.143388	0.143232
chr16	89987125	89987221	6526965	0	+	0.572917	(0.523,0.58]	chr16	647920	12	INTRON	INTRON	AFG3L1P	ENSG00000223959.9	ENST00000429663.6:ENST00000418696.5:ENST00000690928.1:ENST00000436447.5:ENST00000457926.5:ENST00000688932.1:ENST00000685584.1:ENST00000437774.5:ENST00000557444.5:ENST00000388970.7:ENST00000458301.5	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	4	89	2	2.51099	3.7364800000000002	4.96197	0.0521137	0.013853	0.148503	0.0820397
chr13	98402328	98402428	5636289	0	+	0.48	(0.45,0.485]	chr13	553598	60	UTR3	UTR3:EXON_MRNA:INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2	protein_coding	protein_coding	protein_coding	protein_coding	5	304	2	3.62759	3.7360949999999997	3.8446	0.00409371	0.00212514	0.0413652	0.0240165
chr6	131717073	131717173	3007704	0	+	0.45	(0.419,0.45]	chr6	294103	231	INTRON	INTRON	ENPP3	ENSG00000154269.15	ENST00000414305.5:ENST00000357639.8:ENST00000358229.6	protein_coding	protein_coding	protein_coding	protein_coding	1	60	2	2.68635	3.73605	4.78575	0.0876314	0.0224633	0.183437	0.108193
chr13	113588544	113588643	5658885	0	+	0.50505	(0.485,0.523]	chr13	555775	23	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	117	2	3.13862	3.735765	4.33291	0.0398026	9.5504e-4	0.133884	0.0137043
chr1	119725957	119726055	224064	0	+	0.367347	(0.36,0.39]	chr1	24645	6	INTRON	INTRON	PHGDH	ENSG00000092621.13	ENST00000641597.1:ENST00000493622.5:ENST00000641213.1:ENST00000641947.1:ENST00000642041.1:ENST00000641074.1:ENST00000641115.1:ENST00000642021.1:ENST00000641491.1:ENST00000641023.2:ENST00000369409.9:ENST00000641573.1:ENST00000641513.1:ENST00000641375.1:ENST00000641891.1:ENST00000641570.1:ENST00000641587.1:ENST00000641371.1:ENST00000462324.2:ENST00000641272.1:ENST00000641247.1:ENST00000641756.1:ENST00000641711.1:ENST00000641927.1:ENST00000641314.1:ENST00000369407.3:ENST00000641811.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	62	2	2.42193	3.73571	5.04949	0.0563927	0.0391325	0.154188	0.142703
chr14	30922504	30922604	5950953	0	-	0.35	(0.33,0.36]	chr14	583071	30	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000366206.2:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	73	2	2.0477	3.735685	5.42367	0.0538765	0.0299185	0.167824	0.116945
chrX	109644486	109644586	8090553	0	-	0.36	(0.33,0.36]	chrX	843618	3	SS3_PROX	SS3_PROX:INTRON	ACSL4	ENSG00000068366.21	ENST00000505075.1:ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000683559.1:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000514500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	122	2	3.52554	3.7354849999999997	3.94543	0.0229449	0.0031765	0.102982	0.0316024
chr3	172115986	172116086	1628229	0	+	0.36	(0.33,0.36]	chr3	170543	30	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	2.51922	3.7354249999999998	4.95163	0.0659899	0.0583482	0.189025	0.155373
chr7	127934225	127934325	3471068	0	+	0.48	(0.45,0.485]	chr7	335419	45	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.69444	3.735075	4.77571	0.0719884	0.0471378	0.168159	0.156915
chr7	131078974	131079073	3712547	0	-	0.454545	(0.45,0.485]	chr7	356789	20	INTRON	INTRON	LINC-PINT	ENSG00000231721.7	ENST00000647388.1:ENST00000423414.5:ENST00000433079.5:ENST00000642156.1:ENST00000646429.1:ENST00000451786.5:ENST00000646587.1:ENST00000645248.1:ENST00000642602.1:ENST00000644804.1:ENST00000647288.1:ENST00000643135.1:ENST00000643855.1:ENST00000643874.1:ENST00000644188.1:ENST00000435523.5:ENST00000431189.1:ENST00000642483.1:ENST00000429901.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	44	2	2.69444	3.735075	4.77571	0.0719884	0.0471378	0.168159	0.156915
chr10	79205162	79205261	4533410	0	+	0.494949	(0.485,0.523]	chr10	432445	31	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	75	2	2.21906	3.7347699999999997	5.25048	0.0861655	0.0059614	0.181978	0.0479866
chr11	68421299	68421398	4883183	0	+	0.535354	(0.523,0.58]	chr11	470622	44	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	196	2	2.93948	3.734255	4.52903	0.00661401	0.00343357	0.0512951	0.0375808
chr1	52914595	52914630	485577	0	-	0.628571	(0.58,1]	chr1	57726	1	INTRON	INTRON	ECHDC2	ENSG00000121310.17	ENST00000536120.5:ENST00000371522.9:ENST00000460612.5:ENST00000371520.5:ENST00000358358.9:ENST00000476477.6:ENST00000467988.2:ENST00000488268.5:ENST00000544365.5:ENST00000495920.5:ENST00000544531.5:ENST00000480312.6:ENST00000542552.1:ENST00000474789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	2.50987	3.734005	4.95814	0.0865901	0.0074469	0.182221	0.0553519
chr13	113350748	113350848	5753440	0	-	0.64	(0.58,1]	chr13	564104	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.50987	3.734005	4.95814	0.0865901	0.0074469	0.182221	0.0553519
chr3	51499772	51499872	1776517	0	-	0.74	(0.58,1]	chr3	184540	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DCAF1	ENSG00000145041.16	ENST00000504652.5:ENST00000423656.5:ENST00000684031.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.50987	3.734005	4.95814	0.0865901	0.0074469	0.182221	0.0553519
chr17	57464409	57464509	6761856	0	+	0.48	(0.45,0.485]	chr17	682137	193	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.75654	3.73382	4.7111	0.0781398	0.0419966	0.175203	0.149115
chr7	26323735	26323835	3332194	0	+	0.42	(0.419,0.45]	chr7	322639	302	INTRON	INTRON	SNX10	ENSG00000086300.16	ENST00000338523.9:ENST00000446848.6:ENST00000416246.5:ENST00000412416.5:ENST00000396376.5	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.61392	3.733785	4.85365	0.0961463	0.0197641	0.189169	0.100774
chr1	61117829	61117929	146458	0	+	0.5	(0.485,0.523]	chr1	17144	56	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	71	2	2.24968	3.7336850000000004	5.21769	0.0359739	0.0337351	0.133139	0.127853
chr3	140951027	140951127	1585862	0	+	0.47	(0.45,0.485]	chr3	167506	79	INTRON	INTRON	SLC25A36	ENSG00000114120.14	ENST00000446041.6:ENST00000324194.12:ENST00000648615.1:ENST00000502756.1:ENST00000393015.8:ENST00000515813.1:ENST00000507429.5:ENST00000502594.5:ENST00000453248.6:ENST00000631654.1:ENST00000513887.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	2.62955	3.73355	4.83755	0.06646	0.0530416	0.167062	0.162385
chrX	16852964	16853054	7985429	0	-	0.455556	(0.45,0.485]	chrX	835434	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	RBBP7	ENSG00000102054.18	ENST00000380087.7:ENST00000380084.8:ENST00000404022.5:ENST00000481586.1:ENST00000444437.5:ENST00000416035.1:ENST00000486166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	2.62955	3.73355	4.83755	0.06646	0.0530416	0.167062	0.162385
chr20	62954071	62954170	7508236	0	+	0.555556	(0.523,0.58]	chr20	783170	4	INTRON	INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5:ENST00000411611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.74768	3.73345	4.71922	0.0721601	0.0411359	0.168159	0.147756
chr8	38450473	38450573	3968128	0	-	0.58	(0.523,0.58]	chr8	379315	66	INTRON	INTRON	FGFR1	ENSG00000077782.22	ENST00000649678.1:ENST00000397091.9:ENST00000619564.3:ENST00000447712.7:ENST00000341462.9:ENST00000532791.5:ENST00000674380.1:ENST00000674189.1:ENST00000683765.1:ENST00000425967.8:ENST00000683948.1:ENST00000397113.6:ENST00000356207.9:ENST00000335922.9:ENST00000683815.1:ENST00000684654.1:ENST00000326324.10:ENST00000674474.1:ENST00000397103.5:ENST00000397108.8:ENST00000487647.5:ENST00000530701.1:ENST00000470826.5:ENST00000683276.1:ENST00000683795.1:ENST00000496296.5:ENST00000527203.5:ENST00000533668.5:ENST00000525001.5:ENST00000526742.5:ENST00000529552.5:ENST00000484370.5:ENST00000530568.5:ENST00000434187.5:ENST00000397090.4:ENST00000413133.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	85	2	2.96095	3.73344	4.50593	0.094303	0.00626025	0.188571	0.0498807
chr1	204100738	204100838	322327	0	+	0.54	(0.523,0.58]	chr1	36272	222	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1:ENST00000528591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.68276	3.7333	4.78384	0.0663135	0.0464998	0.162385	0.156036
chr2	3331126	3331226	1081423	0	-	0.53	(0.523,0.58]	chr2	117645	107	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.68276	3.7333	4.78384	0.0663135	0.0464998	0.162385	0.156036
chr5	176460698	176460797	2595941	0	+	0.525253	(0.523,0.58]	chr5	257577	66	INTRON	INTRON	FAF2	ENSG00000113194.13	ENST00000510730.5:ENST00000261942.7:ENST00000510446.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.68276	3.7333	4.78384	0.0663135	0.0464998	0.162385	0.156036
chr3	172277128	172277228	1629851	0	+	0.31	(0.29,0.33]	chr3	170590	252	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	2.95342	3.7332150000000004	4.51301	0.0885563	0.0280419	0.183874	0.121542
chr16	29269414	29269514	6433531	0	+	0.54	(0.523,0.58]	chr16	636745	173	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	2	126	2	3.47888	3.73274	3.9866	0.00948884	0.00856566	0.0656203	0.0612
chr13	46573202	46573302	5584106	0	+	0.42	(0.419,0.45]	chr13	550714	191	INTRON	INTRON	LRCH1	ENSG00000136141.15	ENST00000311191.10:ENST00000389797.8:ENST00000443945.6:ENST00000389798.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	2.64776	3.7322349999999997	4.81671	0.08258	0.0551054	0.179396	0.169163
chr16	85372843	85372943	6516799	0	+	0.58	(0.523,0.58]	chr16	646391	135	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.77655	3.7321999999999997	4.68785	0.0685533	0.0194172	0.165066	0.0994526
chr15	25077535	25077632	6064665	0	+	0.587629	(0.58,1]	chr15	595533	1	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SNHG14	ENSG00000224078.15	ENST00000640631.2:ENST00000662834.1:ENST00000667393.1:ENST00000669673.1:ENST00000668750.1:ENST00000664545.1:ENST00000656510.1:ENST00000654223.1:ENST00000549804.7:ENST00000660717.1:ENST00000661253.1:ENST00000670542.1:ENST00000664256.1:ENST00000655153.1:ENST00000666289.1:ENST00000657237.1:ENST00000670394.1:ENST00000667925.1:ENST00000653407.1:ENST00000671374.1:ENST00000668953.1:ENST00000665819.1:ENST00000666606.1:ENST00000660542.1:ENST00000667531.1:ENST00000654902.1:ENST00000656600.1:ENST00000662370.1:ENST00000671491.1	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.91493	3.7321	4.54927	0.0643046	0.0259506	0.161669	0.116361
chr17	57527376	57527476	6762488	0	+	0.59	(0.58,1]	chr17	682146	26	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1:ENST00000674898.1:ENST00000676345.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	40	2	2.91493	3.7321	4.54927	0.0643046	0.0259506	0.161669	0.116361
chr19	33204349	33204445	7240916	0	+	0.583333	(0.58,1]	chr19	741411	6	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	LRP3	ENSG00000130881.14	ENST00000592484.5:ENST00000253193.9:ENST00000590275.1:ENST00000590278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.91493	3.7321	4.54927	0.0643046	0.0259506	0.161669	0.116361
chr8	127910011	127910110	3918953	0	+	0.636364	(0.58,1]	chr8	374216	71	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000521122.2:ENST00000520913.2:ENST00000519481.6:ENST00000651568.1:ENST00000669082.1:ENST00000665166.1:ENST00000656948.1:ENST00000671088.1:ENST00000664924.1:ENST00000670204.1:ENST00000652695.1:ENST00000670602.1:ENST00000651664.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1:ENST00000653406.1	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.91493	3.7321	4.54927	0.0643046	0.0259506	0.161669	0.116361
chr12	132954447	132954546	5542076	0	-	0.59596	(0.58,1]	chr12	547064	58	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	54	2	2.57459	3.7320200000000003	4.88945	0.0388928	0.0224622	0.131324	0.108193
chr1	43765590	43765689	108912	0	+	0.383838	(0.36,0.39]	chr1	13503	264	INTRON	INTRON	ST3GAL3	ENSG00000126091.21	ENST00000646096.1:ENST00000532911.6:ENST00000643597.1:ENST00000643886.1:ENST00000372372.7:ENST00000545417.5:ENST00000330208.6:ENST00000335430.10:ENST00000361400.9:ENST00000347631.8:ENST00000642331.1:ENST00000647237.1:ENST00000643252.1:ENST00000372374.7:ENST00000361392.9:ENST00000646109.1:ENST00000533997.6:ENST00000353126.8:ENST00000645640.1:ENST00000642934.1:ENST00000643283.1:ENST00000351035.8:ENST00000642949.1:ENST00000489897.6:ENST00000646971.1:ENST00000645142.1:ENST00000645705.1:ENST00000530154.5:ENST00000646027.1:ENST00000646069.1:ENST00000642504.1:ENST00000647148.1:ENST00000262915.8:ENST00000479383.6:ENST00000647482.1:ENST00000645394.1:ENST00000647128.1:ENST00000484868.2:ENST00000461066.6:ENST00000361746.9:ENST00000645034.1:ENST00000645165.1:ENST00000647134.1:ENST00000644195.1:ENST00000642194.1:ENST00000372368.7:ENST00000646686.1:ENST00000372366.6:ENST00000361812.9:ENST00000469715.6:ENST00000372369.5:ENST00000372367.5:ENST00000372365.5:ENST00000528371.5:ENST00000533212.5:ENST00000530581.5:ENST00000531816.1:ENST00000531993.6:ENST00000490541.6:ENST00000372362.6:ENST00000531451.5:ENST00000646416.1:ENST00000645117.1:ENST00000533933.6:ENST00000332628.11:ENST00000643813.1:ENST00000644922.1:ENST00000644287.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	2.9032	3.73198	4.56076	0.103289	0.0337607	0.197541	0.133139
chr11	70761469	70761569	5061896	0	-	0.58	(0.523,0.58]	chr11	492701	436	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	55	2	2.70025	3.7315750000000003	4.7629	0.0763549	0.0167014	0.174544	0.0917029
chr2	63990305	63990404	1166741	0	-	0.535354	(0.523,0.58]	chr2	127344	59	INTRON	INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.70025	3.7315750000000003	4.7629	0.0763549	0.0167014	0.174544	0.0917029
chr17	72492173	72492272	6963222	0	-	0.444444	(0.419,0.45]	chr17	710350	35	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000648907.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000650483.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000647593.1:ENST00000649311.1:ENST00000648520.1:ENST00000649250.1:ENST00000648069.1:ENST00000647953.1:ENST00000648176.2:ENST00000648403.1:ENST00000649269.1:ENST00000577828.6:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1:ENST00000650510.1:ENST00000649013.1:ENST00000647850.1:ENST00000648500.1	lncRNA	lncRNA	lncRNA	lncRNA	3	77	2	2.27509	3.731565	5.18804	0.051668	0.0362019	0.148503	0.139793
chr1	161020109	161020209	606377	0	-	0.51	(0.485,0.523]	chr1	72054	171	INTRON	INTRON	F11R:ENSG00000270149	ENSG00000158769.18:ENSG00000270149.5	ENST00000621309.4:ENST00000368026.11:ENST00000289779.7:ENST00000537746.1:ENST00000470694.1:ENST00000335772.3:ENST00000602966.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	56	2	2.77877	3.731555	4.68434	0.0682166	0.0200045	0.164526	0.100864
chr2	240623198	240623298	1075175	0	+	0.43	(0.419,0.45]	chr2	116654	38	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	2	81	2	2.15749	3.731485	5.30548	0.104805	0.00792071	0.198753	0.057762
chr17	17823907	17824007	6865762	0	-	0.64	(0.58,1]	chr17	695922	3	SS3_PROX	SS3_PROX:INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.15496	3.731215	5.30747	0.0548868	0.0196049	0.168717	0.0955413
chr3	149192885	149192985	1939366	0	-	0.39	(0.36,0.39]	chr3	197356	43	INTRON	INTRON	CP	ENSG00000047457.14	ENST00000481169.5:ENST00000264613.11:ENST00000494544.1:ENST00000490639.5:ENST00000462336.5:ENST00000489736.5:ENST00000497797.5:ENST00000471356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	59	2	2.73901	3.73116	4.72331	0.0786198	0.0236929	0.175203	0.111208
chr2	232266939	232267039	1054138	0	+	0.45	(0.419,0.45]	chr2	114618	31	INTRON	INTRON	DIS3L2	ENSG00000144535.20	ENST00000273009.10:ENST00000390005.9:ENST00000445090.5:ENST00000325385.12:ENST00000433430.5:ENST00000498319.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	2.7072600000000002	3.7310800000000004	4.7549	0.0888907	0.0496323	0.183874	0.160725
chr6	158026269	158026369	3059755	0	+	0.55	(0.523,0.58]	chr6	297373	81	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.19842	3.7308700000000004	5.26332	0.0551586	0.0337698	0.169218	0.124319
chr1	26927364	26927464	70128	0	+	0.42	(0.419,0.45]	chr1	7863	28	INTRON	INTRON	NUDC	ENSG00000090273.14	ENST00000435827.6:ENST00000321265.10:ENST00000452707.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.58571	3.7308450000000004	4.87598	0.0768574	0.0613171	0.18013	0.174882
chr16	46914501	46914601	6442731	0	+	0.42	(0.419,0.45]	chr16	639019	42	INTRON	INTRON	GPT2	ENSG00000166123.14	ENST00000340124.9:ENST00000440783.2	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.58571	3.7308450000000004	4.87598	0.0768574	0.0613171	0.18013	0.174882
chr22	36026439	36026539	7805806	0	-	0.42	(0.419,0.45]	chr22	817798	649	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.58571	3.7308450000000004	4.87598	0.0768574	0.0613171	0.18013	0.174882
chr3	125367807	125367907	1902704	0	-	0.42	(0.419,0.45]	chr3	193003	101	INTRON	INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000471196.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.58571	3.7308450000000004	4.87598	0.0768574	0.0613171	0.18013	0.174882
chr6	167892589	167892686	3074005	0	+	0.371134	(0.36,0.39]	chr6	298836	12	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	74	2	1.9317	3.730785	5.52987	0.0683899	0.0287883	0.193274	0.115991
chr13	112693942	112694041	5652579	0	+	0.414141	(0.39,0.419]	chr13	554894	31	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.90127	3.7303499999999996	4.55943	0.104562	0.0339406	0.19835	0.133629
chr17	57421308	57421408	6761422	0	+	0.52	(0.485,0.523]	chr17	682125	139	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	61	2	2.74097	3.730305	4.71964	0.0718646	0.0180255	0.168159	0.0952934
chr1	28458159	28458259	74010	0	+	0.54	(0.523,0.58]	chr1	8395	3	SS5_PROX	SS5_PROX:INTRON	PHACTR4	ENSG00000204138.13	ENST00000633371.1:ENST00000632202.1:ENST00000632421.1:ENST00000463428.5:ENST00000373839.8:ENST00000493669.2:ENST00000633167.1:ENST00000373836.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.61478	3.7302350000000004	4.84569	0.0610722	0.052707	0.167062	0.158506
chr10	79168325	79168425	4533040	0	+	0.56	(0.523,0.58]	chr10	432438	58	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.61478	3.7302350000000004	4.84569	0.0610722	0.052707	0.167062	0.158506
chr20	35277129	35277226	7552368	0	-	0.57732000000000006	(0.523,0.58]	chr20	788454	9	UTR3	UTR3:EXON_MRNA:INTRON	MMP24OS	ENSG00000126005.17	ENST00000635104.1:ENST00000566203.6:ENST00000433764.5:ENST00000438751.5:ENST00000454184.5:ENST00000456350.5:ENST00000455178.1:ENST00000456790.2:ENST00000435366.2:ENST00000424358.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.61478	3.7302350000000004	4.84569	0.0610722	0.052707	0.167062	0.158506
chr3	13198026	13198126	1691122	0	-	0.57	(0.523,0.58]	chr3	176566	335	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.61478	3.7302350000000004	4.84569	0.0610722	0.052707	0.167062	0.158506
chr6	7109601	7109701	2838095	0	+	0.53	(0.523,0.58]	chr6	277918	5	INTRON	INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000491191.5:ENST00000471433.5:ENST00000379938.7:ENST00000467782.5:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	2.61478	3.7302350000000004	4.84569	0.0610722	0.052707	0.167062	0.158506
chr2	11590995	11591095	720793	0	+	0.47	(0.45,0.485]	chr2	84164	2	SS3_PROX	SS3_PROX:INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000381483.6:ENST00000234142.9:ENST00000432985.1	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.62266	3.730105	4.83755	0.06646	0.0243222	0.162385	0.113231
chr16	85358641	85358741	6516656	0	+	0.63	(0.58,1]	chr16	646387	6	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000568080.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	3.16566	3.7300999999999997	4.29454	0.0305531	0.0304114	0.126768	0.11845
chr16	85376941	85377041	6516840	0	+	0.64	(0.58,1]	chr16	646391	176	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	3.16566	3.7300999999999997	4.29454	0.0305531	0.0304114	0.126768	0.11845
chr2	8740364	8740454	1083290	0	-	0.288889	[0,0.29]	chr2	117890	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	KIDINS220	ENSG00000134313.17	ENST00000569008.2:ENST00000689369.1:ENST00000693394.1:ENST00000689852.1:ENST00000693597.1:ENST00000693432.1:ENST00000496383.5:ENST00000256707.8:ENST00000687912.1:ENST00000685097.1:ENST00000473731.5:ENST00000687894.1:ENST00000691030.1:ENST00000686383.1:ENST00000686906.1:ENST00000488729.5:ENST00000489024.5:ENST00000638224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.51762	3.729925	4.94223	0.0610332	0.0379936	0.18013	0.131324
chr1	40759692	40759792	102058	0	+	0.46	(0.45,0.485]	chr1	12195	10	INTRON	INTRON	NFYC	ENSG00000066136.21	ENST00000424419.6:ENST00000427410.6:ENST00000447388.8:ENST00000425457.6:ENST00000456393.6:ENST00000372654.5:ENST00000372653.5:ENST00000372669.8:ENST00000372652.5:ENST00000372651.5:ENST00000440226.7:ENST00000416859.6:ENST00000308733.9:ENST00000414185.1:ENST00000525349.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	2.81608	3.7297700000000003	4.64346	0.0850039	0.0375071	0.181766	0.139823
chr21	42844275	42844374	7675414	0	-	0.383838	(0.36,0.39]	chr21	802287	6	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.46174	3.72923	4.99672	0.0604395	0.0361885	0.158506	0.139793
chr6	145810810	145810910	3285884	0	-	0.47	(0.45,0.485]	chr6	317432	40	INTRON	INTRON	FBXO30	ENSG00000118496.5	ENST00000237281.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.5616	3.7292249999999996	4.89685	0.0614781	0.0598406	0.177269	0.158506
chr10	112194747	112194847	4760734	0	-	0.47	(0.45,0.485]	chr10	455255	111	INTRON	INTRON	GPAM	ENSG00000119927.14	ENST00000480130.5:ENST00000498541.1	protein_coding	processed_transcript	protein_coding	processed_transcript	7	297	2	3.63231	3.72899	3.82567	0.0135982	4.67365e-4	0.079591	0.00830517
chr6	157317680	157317780	3298468	0	-	0.49	(0.485,0.523]	chr6	319197	243	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.55201	3.7287150000000002	4.90542	0.0561086	0.0272692	0.154188	0.119337
chr2	3299393	3299493	1081101	0	-	0.5	(0.485,0.523]	chr2	117633	167	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	116	2	3.56212	3.72846	3.8948	0.0199384	0.00310434	0.0967486	0.0311614
chr7	75713168	75713268	3608235	0	-	0.56	(0.523,0.58]	chr7	348444	581	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6:ENST00000485723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	68	2	3.32604	3.728325	4.13061	0.0533354	0.0296013	0.167062	0.116079
chr22	37514805	37514900	7808355	0	-	0.494737	(0.485,0.523]	chr22	818443	1	INTRON	INTRON	CARD10	ENSG00000100065.15	ENST00000403299.5:ENST00000251973.10	protein_coding	protein_coding	protein_coding	protein_coding	1	57	2	2.85123	3.728205	4.60518	0.0614408	0.0233371	0.158506	0.110098
chr16	89315748	89315846	6659971	0	-	0.5	(0.485,0.523]	chr16	666672	18	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.7365	3.7280699999999998	4.71964	0.0718646	0.0423471	0.168159	0.149195
chr3	136439513	136439612	1922202	0	-	0.353535	(0.33,0.36]	chr3	195534	55	INTRON	INTRON	STAG1	ENSG00000118007.13	ENST00000383202.7:ENST00000236698.9:ENST00000434713.6:ENST00000483235.5:ENST00000629124.2:ENST00000487065.5:ENST00000492318.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.88577	3.72806	4.57035	0.0945416	0.0339073	0.188571	0.133585
chr8	13126243	13126343	3939769	0	-	0.34	(0.33,0.36]	chr8	376710	101	INTRON	INTRON	DLC1	ENSG00000164741.15	ENST00000276297.9:ENST00000358919.6:ENST00000512044.6:ENST00000509922.5:ENST00000503161.6:ENST00000515225.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.88577	3.72806	4.57035	0.0945416	0.0339073	0.188571	0.133585
chr9	108903769	108903869	4362835	0	-	0.35	(0.33,0.36]	chr9	416568	1	SS3_PROX	SS3_PROX:INTRON	ELP1	ENSG00000070061.16	ENST00000675765.1:ENST00000374647.10:ENST00000675078.1:ENST00000674948.1:ENST00000676121.1:ENST00000676429.1:ENST00000674704.1:ENST00000674938.1:ENST00000675602.1:ENST00000675215.1:ENST00000676044.1:ENST00000675979.1:ENST00000675325.1:ENST00000495759.6:ENST00000675893.1:ENST00000675943.1:ENST00000675535.1:ENST00000674890.1:ENST00000675233.1:ENST00000676086.1:ENST00000674836.1:ENST00000675406.1:ENST00000675748.1:ENST00000675400.1:ENST00000676237.1:ENST00000675825.1:ENST00000676424.1:ENST00000675647.1:ENST00000675877.1:ENST00000676416.1:ENST00000675052.1:ENST00000674535.1:ENST00000537196.1:ENST00000675566.1:ENST00000675507.1:ENST00000675727.1:ENST00000675711.1:ENST00000675458.1:ENST00000675335.1:ENST00000675321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.88577	3.72806	4.57035	0.0945416	0.0339073	0.188571	0.133585
chr3	30639446	30639546	1433421	0	+	0.5	(0.485,0.523]	chr3	153006	62	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4:ENST00000673250.1:ENST00000672866.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.67159	3.727925	4.78426	0.0660335	0.0478226	0.162385	0.1588
chr9	95002816	95002916	4190021	0	+	0.52	(0.485,0.523]	chr9	398123	230	INTRON	INTRON	AOPEP	ENSG00000148120.18	ENST00000375315.8:ENST00000297979.9:ENST00000424143.5:ENST00000462125.5:ENST00000479161.5:ENST00000451893.5:ENST00000460573.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.67159	3.727925	4.78426	0.0660335	0.0478226	0.162385	0.1588
chr17	44065963	44066063	6910578	0	-	0.51	(0.485,0.523]	chr17	703402	1	SS5_PROX	SS5_PROX:INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.23742	3.727555	5.21769	0.0515447	0.0359739	0.165949	0.127853
chr1	17667892	17667991	54890	0	+	0.636364	(0.58,1]	chr1	5603	29	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	51	2	2.87471	3.72748	4.58025	0.0495478	0.0172566	0.146562	0.0923809
chr10	79104629	79104729	4532401	0	+	0.59	(0.58,1]	chr10	432420	350	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.87471	3.72748	4.58025	0.0495478	0.0172566	0.146562	0.0923809
chr16	8639321	8639410	6381012	0	+	0.58427	(0.58,1]	chr16	631100	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	METTL22	ENSG00000067365.15	ENST00000163678.11:ENST00000381920.8:ENST00000561758.5:ENST00000568967.5:ENST00000572956.5:ENST00000561993.5:ENST00000563501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	51	2	2.87471	3.72748	4.58025	0.0495478	0.0172566	0.146562	0.0923809
chr7	47480302	47480402	3588611	0	-	0.65	(0.58,1]	chr7	346123	272	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.87471	3.72748	4.58025	0.0495478	0.0172566	0.146562	0.0923809
chr2	163695403	163695503	1295916	0	-	0.42	(0.419,0.45]	chr2	139073	832	INTRON	INTRON	FIGN	ENSG00000182263.14	ENST00000409634.5:ENST00000333129.4:ENST00000482917.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.7644	3.7273650000000003	4.69033	0.0958674	0.0447981	0.189038	0.154539
chr16	68297527	68297627	6476704	0	+	0.47	(0.45,0.485]	chr16	643255	3	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SLC7A6	ENSG00000103064.15	ENST00000618043.4:ENST00000648130.1:ENST00000219343.11:ENST00000379152.7:ENST00000566454.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	84	2	2.15468	3.727205	5.29973	0.035042	0.0329339	0.132393	0.12704
chr17	38741434	38741533	6895589	0	-	0.565657	(0.523,0.58]	chr17	700401	6	INTRON	INTRON	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000611883.4:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.43762	3.727195	5.01677	0.0482765	0.0343548	0.144601	0.134666
chr11	70819463	70819563	5062478	0	-	0.55	(0.523,0.58]	chr11	492713	119	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.6197	3.72697	4.83424	0.0853454	0.0144272	0.181766	0.0833845
chr6	137867658	137867736	3010363	0	+	0.551282	(0.523,0.58]	chr6	294491	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	TNFAIP3	ENSG00000118503.16	ENST00000421450.1:ENST00000612899.5:ENST00000420009.5:ENST00000237289.8:ENST00000433680.1	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.6197	3.72697	4.83424	0.0853454	0.0144272	0.181766	0.0833845
chr3	128268377	128268477	1561780	0	+	0.43	(0.419,0.45]	chr3	165305	32	INTRON	INTRON	EEFSEC	ENSG00000132394.11	ENST00000254730.11:ENST00000483457.1:ENST00000484438.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.52086	3.72688	4.9329	0.0716557	0.0683849	0.193274	0.168159
chr14	23093844	23093944	5939171	0	-	0.43	(0.419,0.45]	chr14	582243	3	SS3_PROX	SS3_PROX:INTRON	ACIN1	ENSG00000100813.15	ENST00000605057.6:ENST00000262710.5:ENST00000457657.5:ENST00000555053.5	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	2.57738	3.72668	4.87598	0.0768574	0.0294759	0.174882	0.125644
chr13	113026768	113026868	5655895	0	+	0.51	(0.485,0.523]	chr13	555153	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000397024.1:ENST00000486806.1:ENST00000473345.5	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.62192	3.7263200000000003	4.83072	0.0849566	0.0148956	0.181766	0.0847741
chr2	113722511	113722603	1258904	0	-	0.48913	(0.485,0.523]	chr2	135582	8	INTRON	INTRON	SLC35F5	ENSG00000115084.15	ENST00000469702.5:ENST00000245680.7:ENST00000409106.5:ENST00000459683.5:ENST00000470204.2:ENST00000447673.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	54	2	2.62192	3.7263200000000003	4.83072	0.0849566	0.0148956	0.181766	0.0847741
chr13	29589961	29590061	5677917	0	-	0.49	(0.485,0.523]	chr13	557663	33	INTRON	INTRON	SLC7A1	ENSG00000139514.13	ENST00000380752.10	protein_coding	protein_coding	protein_coding	protein_coding	4	81	2	2.05872	3.726205	5.39369	0.0390426	0.0275819	0.142605	0.112782
chr8	122886826	122886926	3910714	0	+	0.41	(0.39,0.419]	chr8	373489	229	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6:ENST00000534247.1	protein_coding	protein_coding	protein_coding	protein_coding	3	184	2	3.46849	3.7259599999999997	3.98343	0.0136291	0.00309726	0.0797406	0.0311614
chr20	34471915	34472015	7461887	0	+	0.35	(0.33,0.36]	chr20	776788	4	SS5_PROX	SS5_PROX:INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000262650.10:ENST00000665346.1:ENST00000483727.5:ENST00000461661.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	61	2	2.50017	3.7258999999999998	4.95163	0.0583482	0.0325626	0.155373	0.130925
chr20	38427970	38428067	7561107	0	-	0.515464	(0.485,0.523]	chr20	789772	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000423536.6:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	72	2	2.38174	3.7258649999999998	5.06999	0.0445854	0.0253525	0.140478	0.115383
chr20	63213563	63213663	7585900	0	-	0.58	(0.523,0.58]	chr20	792948	3	SS5_PROX	SS5_PROX:INTRON	YTHDF1	ENSG00000149658.18	ENST00000370339.8:ENST00000370334.4	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.86937	3.724975	4.58058	0.0860403	0.0324455	0.181766	0.130548
chr20	8556524	8556624	7430833	0	+	0.43	(0.419,0.45]	chr20	773698	1845	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	190	2	3.02953	3.7247899999999996	4.42005	0.0111596	0.00606041	0.071709	0.0514368
chr17	35057794	35057894	6887882	0	-	0.32	(0.29,0.33]	chr17	699061	156	INTRON	INTRON	RFFL	ENSG00000092871.17	ENST00000315249.11:ENST00000394597.7:ENST00000584655.5:ENST00000447669.6:ENST00000584541.1:ENST00000414419.6:ENST00000581265.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	114	2	3.4616	3.724425	3.98725	0.0225545	0.00251767	0.102982	0.0270146
chr7	1009349	1009449	3526316	0	-	0.68	(0.58,1]	chr7	340566	84	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.7038	3.72363	4.74346	0.0648563	0.0121457	0.162218	0.0754623
chr10	95327278	95327377	4732895	0	-	0.484848	(0.45,0.485]	chr10	451855	41	INTRON	INTRON	SORBS1	ENSG00000095637.23	ENST00000371227.8:ENST00000306402.10:ENST00000371249.6:ENST00000371247.7:ENST00000649911.1:ENST00000371246.6:ENST00000634504.1:ENST00000607232.5:ENST00000361941.7:ENST00000277982.9:ENST00000371245.7:ENST00000649575.1:ENST00000371241.5:ENST00000354106.7:ENST00000371239.5	protein_coding	protein_coding	protein_coding	protein_coding	1	70	2	3.33209	3.723275	4.11446	0.0592571	0.0308842	0.176157	0.119556
chr6	30737200	30737298	3117932	0	-	0.581633	(0.58,1]	chr6	302750	9	INTRON	INTRON	FLOT1	ENSG00000137312.15	ENST00000376389.8:ENST00000487376.5:ENST00000413165.5:ENST00000476729.5:ENST00000438162.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	105	2	3.60807	3.722995	3.83792	0.00865536	0.00495688	0.0623824	0.0425347
chr7	130911309	130911409	3711089	0	-	0.51	(0.485,0.523]	chr7	356708	266	INTRON	INTRON	ENSG00000226380	ENSG00000226380.9	ENST00000432045.6:ENST00000447307.5:ENST00000418546.1	lncRNA	lncRNA	lncRNA	lncRNA	5	259	2	3.25079	3.722995	4.1952	0.0163875	1.92246e-4	0.0876058	0.00439577
chr20	34920346	34920438	7463203	0	+	0.521739	(0.485,0.523]	chr20	776981	4	SS3_PROX	SS3_PROX:INTRON	ACSS2	ENSG00000131069.20	ENST00000481284.5:ENST00000475459.6:ENST00000477932.5:ENST00000480978.5:ENST00000360596.7:ENST00000253382.5:ENST00000476922.5:ENST00000493250.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	75	2	2.24831	3.7229	5.19749	0.0826414	0.00672953	0.179476	0.0519464
chr16	14603548	14603645	6553904	0	-	0.453608	(0.45,0.485]	chr16	652389	16	INTRON	INTRON	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11:ENST00000539279.5:ENST00000651049.1:ENST00000650960.1:ENST00000651634.1:ENST00000564113.6:ENST00000652411.1:ENST00000652501.1:ENST00000651027.1:ENST00000651913.1:ENST00000563641.6:ENST00000569444.5:ENST00000651241.1:ENST00000538472.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	2.87326	3.72288	4.5725	0.0926859	0.033576	0.188571	0.133139
chr17	2084630	2084729	6832793	0	-	0.636364	(0.58,1]	chr17	691062	23	INTRON	INTRON	SMG6	ENSG00000070366.14	ENST00000263073.11:ENST00000573166.5:ENST00000354901.8:ENST00000536871.6:ENST00000575454.1:ENST00000575338.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.55596	3.722705	4.88945	0.0534085	0.0388928	0.167062	0.131324
chr5	880906	881006	2608184	0	-	0.7	(0.58,1]	chr5	259469	4	SS5_PROX	SS5_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.55596	3.722705	4.88945	0.0534085	0.0388928	0.167062	0.131324
chr6	41722462	41722561	3132618	0	-	0.59596	(0.58,1]	chr6	305481	167	INTRON	INTRON	TFEB	ENSG00000112561.19	ENST00000358871.6:ENST00000373033.6:ENST00000230323.8:ENST00000677531.1:ENST00000403298.9:ENST00000420312.6:ENST00000424495.2:ENST00000678831.1:ENST00000419396.6:ENST00000416140.6:ENST00000678871.1:ENST00000394283.5:ENST00000679237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.55596	3.722705	4.88945	0.0534085	0.0388928	0.167062	0.131324
chr2	11543824	11543923	720303	0	+	0.585859	(0.58,1]	chr2	84098	6	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000628795.2:ENST00000381486.7:ENST00000263834.9:ENST00000389825.7:ENST00000381483.6	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.09276	3.7224500000000003	5.35214	0.0619333	0.0181452	0.180615	0.0921579
chr3	13344202	13344302	1692282	0	-	0.42	(0.419,0.45]	chr3	176684	5	INTRON	INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000695490.1:ENST00000695491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	128	2	3.41842	3.7223049999999995	4.02619	0.0312055	0.00294478	0.120236	0.0300172
chr8	22561150	22561234	3771905	0	+	0.583333	(0.58,1]	chr8	362930	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SORBS3	ENSG00000120896.14	ENST00000240123.12:ENST00000517500.5:ENST00000517535.5:ENST00000523402.5:ENST00000520563.3:ENST00000524057.3:ENST00000518512.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	2.95313	3.722145	4.49116	0.0435972	0.0207449	0.139245	0.102713
chr9	134367379	134367478	4261097	0	+	0.616162	(0.58,1]	chr9	406311	404	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	52	2	2.95313	3.722145	4.49116	0.0435972	0.0207449	0.139245	0.102713
chr13	97362635	97362735	5632217	0	+	0.47	(0.45,0.485]	chr13	553214	46	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000449284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	2.49029	3.722045	4.9538	0.0676934	0.0569772	0.193219	0.154343
chr7	103953157	103953257	3663330	0	-	0.39	(0.36,0.39]	chr7	353511	356	INTRON	INTRON	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1:ENST00000681401.1:ENST00000679689.1:ENST00000681182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	64	2	2.67993	3.721915	4.7639	0.0811309	0.0231725	0.177951	0.109982
chr1	156097646	156097745	250860	0	+	0.585859	(0.58,1]	chr1	29445	35	INTRON	INTRON	LMNA	ENSG00000160789.24	ENST00000502751.5:ENST00000368301.6:ENST00000676385.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.38295	3.721825	5.0607	0.0730701	0.029633	0.199669	0.116079
chr17	1561681	1561781	6830766	0	-	0.65	(0.58,1]	chr17	690608	4	SS3_PROX	SS3_PROX:INTRON	PITPNA	ENSG00000174238.16	ENST00000313486.12:ENST00000575288.5:ENST00000576722.5:ENST00000576761.5:ENST00000576010.6:ENST00000573231.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.38295	3.721825	5.0607	0.0730701	0.029633	0.199669	0.116079
chr2	239373300	239373399	1392445	0	-	0.606061	(0.58,1]	chr2	148759	200	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	2.38295	3.721825	5.0607	0.0730701	0.029633	0.199669	0.116079
chr9	134350712	134350812	4260930	0	+	0.65	(0.58,1]	chr9	406311	237	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	2.38295	3.721825	5.0607	0.0730701	0.029633	0.199669	0.116079
chr22	46735058	46735158	7826211	0	-	0.48	(0.45,0.485]	chr22	820977	137	INTRON	INTRON	CERK	ENSG00000100422.14	ENST00000216264.13:ENST00000443629.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	136	2	3.30591	3.7218	4.13769	0.0135996	0.00783394	0.0811697	0.0592199
chr19	45046167	45046266	7270069	0	+	0.555556	(0.523,0.58]	chr19	746627	55	INTRON	INTRON	CLASRP	ENSG00000104859.15	ENST00000221455.8:ENST00000391953.8:ENST00000591410.5:ENST00000592056.5:ENST00000391952.7:ENST00000588936.5:ENST00000544944.6:ENST00000587112.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	2.48104	3.721505	4.96197	0.0521137	0.0313926	0.148503	0.127822
chr10	76073580	76073680	4526909	0	+	0.44	(0.419,0.45]	chr10	432311	144	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.81936	3.721045	4.62273	0.103601	0.0405181	0.197541	0.145945
chr8	120793277	120793377	4059836	0	-	0.43	(0.419,0.45]	chr8	386607	990	INTRON	INTRON	SNTB1	ENSG00000172164.15	ENST00000395601.7:ENST00000517992.2:ENST00000648490.1:ENST00000519177.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	2.81936	3.721045	4.62273	0.103601	0.0405181	0.197541	0.145945
chrX	74160382	74160482	8067860	0	-	0.34	(0.33,0.36]	chrX	841718	37	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1	lncRNA	lncRNA	lncRNA	lncRNA	1	59	2	2.8623	3.7209399999999997	4.57958	0.0634783	0.0288057	0.161669	0.123764
chr11	64766607	64766704	5049533	0	-	0.659794	(0.58,1]	chr11	490376	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000443908.5:ENST00000413725.5:ENST00000433274.6:ENST00000486867.1:ENST00000477596.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	101	2	3.61485	3.720695	3.82654	0.0133763	0.00275362	0.0790342	0.0285628
chr8	128037524	128037623	3920255	0	+	0.464646	(0.45,0.485]	chr8	374311	49	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1	lncRNA	lncRNA	lncRNA	lncRNA	2	59	2	2.37986	3.72062	5.06138	0.0492008	0.0401325	0.146142	0.144727
chr14	89401964	89402063	6028127	0	-	0.383838	(0.36,0.39]	chr14	591472	4	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000556916.5:ENST00000554005.1:ENST00000555855.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	124	2	3.38348	3.7203549999999996	4.05723	0.0308572	0.00256597	0.119556	0.0274214
chr7	111216908	111217008	3684233	0	-	0.31	(0.29,0.33]	chr7	354615	2530	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.78168	3.72018	4.65868	0.0735584	0.0393252	0.17026	0.143321
chr6	87178754	87178854	2950279	0	+	0.31	(0.29,0.33]	chr6	290365	85	INTRON	INTRON	ZNF292	ENSG00000188994.13	ENST00000369577.8:ENST00000369578.6:ENST00000518845.1:ENST00000339907.8:ENST00000496806.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.58669	3.71977	4.85285	0.0567079	0.0563947	0.171933	0.154343
chr11	70739586	70739686	5061677	0	-	0.63	(0.58,1]	chr11	492701	217	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	68	2	2.35391	3.719625	5.08534	0.0600041	0.00549379	0.158506	0.0454065
chr17	80562374	80562474	6809076	0	+	0.51	(0.485,0.523]	chr17	687806	162	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.85817	3.7195850000000004	4.581	0.085711	0.0334631	0.181766	0.133139
chr8	128035346	128035445	3920233	0	+	0.50505	(0.485,0.523]	chr8	374311	27	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1	lncRNA	lncRNA	lncRNA	lncRNA	1	43	2	2.85817	3.7195850000000004	4.581	0.085711	0.0334631	0.181766	0.133139
chrX	48942798	48942897	8040903	0	-	0.40404	(0.39,0.419]	chrX	838808	61	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.61462	3.719505	4.82439	0.0762206	0.0572875	0.174484	0.174149
chr9	101045389	101045489	4201692	0	+	0.38	(0.36,0.39]	chr9	399114	159	INTRON	INTRON	PLPPR1	ENSG00000148123.15	ENST00000374874.8	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.10753	3.719295	5.33106	0.0700776	0.0383628	0.195259	0.131324
chr6	158021983	158022082	3059712	0	+	0.646465	(0.58,1]	chr6	297373	38	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	1.96011	3.71925	5.47839	0.0549599	0.0145198	0.168901	0.0823104
chr1	8759532	8759632	395152	0	-	0.33	(0.29,0.33]	chr1	45073	58	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.16795	3.719245	5.27054	0.0593427	0.0308815	0.176374	0.119556
chr20	26010468	26010565	7452328	0	+	0.484536	(0.45,0.485]	chr20	775551	8	EXON_LNCRNA	EXON_LNCRNA	ENSG00000287569	ENSG00000287569.1	ENST00000668826.1	lncRNA	lncRNA	lncRNA	lncRNA	2	118	2	3.25658	3.7190950000000003	4.18161	0.0347918	0.00158459	0.126561	0.0196418
chr10	75639683	75639783	4522558	0	+	0.49	(0.485,0.523]	chr10	432265	117	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	2.59183	3.71897	4.84611	0.0608067	0.0250389	0.158506	0.114418
chr13	93275607	93275707	5618268	0	+	0.52	(0.485,0.523]	chr13	553052	476	INTRON	INTRON	GPC6	ENSG00000183098.11	ENST00000377047.9	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.59183	3.71897	4.84611	0.0608067	0.0250389	0.158506	0.114418
chr9	136007730	136007830	4432149	0	-	0.49	(0.485,0.523]	chr9	423617	13	UTR3	UTR3:EXON_MRNA	NACC2	ENSG00000148411.8	ENST00000277554.4:ENST00000371753.5	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.59183	3.71897	4.84611	0.0608067	0.0250389	0.158506	0.114418
chr2	240624289	240624388	1075186	0	+	0.686869	(0.58,1]	chr2	116654	49	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	6	209	2	2.68286	3.7189	4.75494	0.00562192	0.00123949	0.0462153	0.0214143
chr12	95491761	95491861	5296013	0	+	0.5	(0.485,0.523]	chr12	515391	54	INTRON	INTRON	METAP2	ENSG00000111142.14	ENST00000535095.5:ENST00000546753.5:ENST00000261220.13:ENST00000323666.10:ENST00000553151.5:ENST00000550777.5:ENST00000551840.5:ENST00000549808.1:ENST00000546478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	2.53228	3.71885	4.90542	0.0614918	0.0561086	0.18013	0.154188
chr2	121480514	121480613	1262531	0	-	0.494949	(0.485,0.523]	chr2	136083	102	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	43	2	2.53228	3.71885	4.90542	0.0614918	0.0561086	0.18013	0.154188
chr22	33040371	33040471	7795071	0	-	0.44	(0.419,0.45]	chr22	817482	260	INTRON	INTRON	SYN3	ENSG00000185666.15	ENST00000358763.7:ENST00000441821.5	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.50478	3.71884	4.9329	0.0716557	0.0340831	0.168159	0.134158
chr11	70886805	70886905	5063155	0	-	0.48	(0.45,0.485]	chr11	492728	138	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000645599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	71	2	1.89565	3.718755	5.54186	0.069925	0.0243502	0.195209	0.106588
chr11	63870969	63871068	4867123	0	+	0.373737	(0.36,0.39]	chr11	466776	12	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5:ENST00000543674.1:ENST00000540169.5	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.73813	3.718725	4.69932	0.0877431	0.0459393	0.183437	0.154743
chr22	33915098	33915198	7802820	0	-	0.37	(0.36,0.39]	chr22	817661	260	INTRON	INTRON	LARGE1	ENSG00000133424.22	ENST00000397394.8:ENST00000413114.6:ENST00000676070.1:ENST00000674543.1:ENST00000676370.1:ENST00000354992.7:ENST00000402320.6:ENST00000674789.1:ENST00000675277.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.73813	3.718725	4.69932	0.0877431	0.0459393	0.183437	0.154743
chr4	141233889	141233989	2136525	0	+	0.37	(0.36,0.39]	chr4	216974	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA	ZNF330	ENSG00000109445.11	ENST00000262990.9:ENST00000506302.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.73813	3.718725	4.69932	0.0877431	0.0459393	0.183437	0.154743
chr2	3314962	3315062	1081257	0	-	0.62	(0.58,1]	chr2	117633	323	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	2.43115	3.7184999999999997	5.00585	0.0323732	0.0309513	0.127822	0.121593
chr22	48702240	48702339	7751290	0	+	0.59596	(0.58,1]	chr22	812283	85	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	206	2	3.09402	3.718395	4.34277	0.0174733	0.00114006	0.0928044	0.0204002
chr14	89402263	89402362	6028130	0	-	0.363636	(0.36,0.39]	chr14	591472	7	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000556916.5:ENST00000554005.1:ENST00000555855.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.5517	3.71835	4.885	0.0697729	0.0637554	0.184651	0.167185
chr17	14325864	14325964	6683038	0	+	0.39	(0.36,0.39]	chr17	670741	205	INTRON	INTRON	HS3ST3B1	ENSG00000125430.9	ENST00000360954.3:ENST00000466596.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.5517	3.71835	4.885	0.0697729	0.0637554	0.184651	0.167185
chr22	23773478	23773577	7693455	0	+	0.565657	(0.523,0.58]	chr22	805203	1	INTRON	INTRON	MMP11	ENSG00000099953.10	ENST00000465385.5:ENST00000477567.5:ENST00000489582.5:ENST00000428253.1:ENST00000465730.1:ENST00000215743.8:ENST00000437086.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	183	2	3.69181	3.718325	3.74484	0.00664962	0.00510333	0.0540577	0.0433857
chr17	77449266	77449366	6804866	0	+	0.63	(0.58,1]	chr17	686789	22	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	2.27185	3.71819	5.16453	0.0433824	0.0249802	0.152119	0.10758
chr5	123526946	123527046	2523622	0	+	0.35	(0.33,0.36]	chr5	250487	140	INTRON	INTRON	CSNK1G3	ENSG00000151292.18	ENST00000345990.9:ENST00000508708.1:ENST00000512718.7:ENST00000511130.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	2.09481	3.717815	5.34082	0.0702974	0.0338211	0.195709	0.124319
chr6	158021684	158021783	3059709	0	+	0.494949	(0.485,0.523]	chr6	297373	35	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	2	114	2	3.35343	3.71736	4.08129	0.0282341	0.00190029	0.11427	0.0222417
chr2	152593543	152593643	928054	0	+	0.35	(0.33,0.36]	chr2	103106	121	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14:ENST00000492942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	2.93873	3.717225	4.49572	0.103264	0.0305837	0.197541	0.126768
chr1	2265541	2265641	4867	0	+	0.37	(0.36,0.39]	chr1	1052	171	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	81	2	2.60858	3.7171499999999997	4.82572	0.0751666	0.0172967	0.172839	0.0925693
chr6	158027266	158027366	3059765	0	+	0.61	(0.58,1]	chr6	297373	91	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	1.80292	3.71705	5.63118	0.059442300000000003	0.0109983	0.176598	0.0708586
chr9	114203602	114203702	4226188	0	+	0.43	(0.419,0.45]	chr9	400776	72	INTRON	INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8:ENST00000451716.5:ENST00000494090.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	193	2	3.05795	3.716875	4.3758	0.0529681	3.57436e-4	0.149208	0.00689603
chr4	8206221	8206319	2014074	0	+	0.642857	(0.58,1]	chr4	205512	2	INTRON	INTRON	SH3TC1	ENSG00000125089.18	ENST00000510763.5:ENST00000508641.2:ENST00000245105.8:ENST00000506360.5:ENST00000502669.5:ENST00000515682.5:ENST00000457650.7:ENST00000503284.5:ENST00000684698.1:ENST00000684537.1:ENST00000682056.1:ENST00000682862.1:ENST00000507891.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	83	2	2.12324	3.7168	5.31036	0.0642584	0.00312721	0.161669	0.0311915
chr11	115321839	115321939	5129304	0	-	0.36	(0.33,0.36]	chr11	498106	345	INTRON	INTRON	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000541434.5:ENST00000543249.1:ENST00000540951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	61	2	2.53891	3.7167950000000003	4.89468	0.0629186	0.0300873	0.160778	0.126768
chr16	89305205	89305232	6659862	0	-	0.592593	(0.58,1]	chr16	666661	1	CDS_START	CDS_START:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	100	2	3.5406	3.71659	3.89258	0.0154024	0.00229214	0.0849828	0.0253494
chr6	158018095	158018195	3059673	0	+	0.58	(0.523,0.58]	chr6	297372	3	SS5_PROX	SS5_PROX:INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	3	156	2	3.35305	3.7164650000000004	4.07988	0.00800435	0.00399497	0.0597631	0.03705
chr9	133918659	133918759	4429587	0	-	0.55	(0.523,0.58]	chr9	423310	569	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.92656	3.716245	4.50593	0.094303	0.0289226	0.188571	0.124
chr16	85436516	85436616	6517436	0	+	0.63	(0.58,1]	chr16	646391	772	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	2.61273	3.715675	4.81862	0.0388117	0.0102696	0.131324	0.0678072
chr11	120413421	120413520	4951934	0	+	0.292929	(0.29,0.33]	chr11	478368	17	INTRON	INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5:ENST00000529970.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	58	2	2.40711	3.7155300000000002	5.02395	0.0445554	0.0373223	0.140478	0.139793
chr14	89401864	89401964	6028126	0	-	0.48	(0.45,0.485]	chr14	591472	3	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000556916.5:ENST00000554005.1:ENST00000555855.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	2.08776	3.7153849999999995	5.34301	0.0696113	0.0328801	0.194713	0.122593
chr4	6929097	6929196	2012594	0	+	0.525253	(0.523,0.58]	chr4	205371	46	INTRON	INTRON	TBC1D14	ENSG00000132405.19	ENST00000448507.5:ENST00000409757.9	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.46839	3.71518	4.96197	0.0683019	0.0521137	0.193274	0.148503
chr7	1023902	1024002	3526462	0	-	0.58	(0.523,0.58]	chr7	340572	134	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000412051.5:ENST00000488073.1:ENST00000444428.5:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.46839	3.71518	4.96197	0.0683019	0.0521137	0.193274	0.148503
chr19	53875175	53875272	7291255	0	+	0.587629	(0.58,1]	chr19	750445	8	UTR3	UTR3:EXON_MRNA	MYADM	ENSG00000179820.16	ENST00000391770.9:ENST00000391771.1:ENST00000391769.2	protein_coding	protein_coding	protein_coding	protein_coding	35	1444	2	3.47546	3.715115	3.95477	5.41385e-4	1.3438e-4	0.0135838	0.00339889
chr16	81640765	81640865	6509705	0	+	0.43	(0.419,0.45]	chr16	645926	187	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.5763	3.714975	4.85365	0.100818	0.0197641	0.196131	0.100774
chr1	1341887	1341969	381196	0	-	0.682927	(0.58,1]	chr1	43166	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	DVL1	ENSG00000107404.21	ENST00000378891.9:ENST00000378888.10:ENST00000472445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	53	2	2.48056	3.71469	4.94882	0.0354433	0.0277636	0.127188	0.12074
chr9	70394293	70394393	4313703	0	-	0.3	(0.29,0.33]	chr9	412398	59	INTRON	INTRON	KLF9	ENSG00000119138.5	ENST00000377126.4	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.84122	3.714455	4.58769	0.0806047	0.0350501	0.177452	0.137151
chr2	10368677	10368737	719086	0	+	0.75	(0.58,1]	chr2	84033	1	UTR5	UTR5:EXON_MRNA:INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4:ENST00000613496.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.61009	3.7143550000000003	4.81862	0.0747426	0.0102696	0.172361	0.0678072
chr6	15327533	15327633	2857322	0	+	0.59	(0.58,1]	chr6	279178	782	INTRON	INTRON	JARID2	ENSG00000008083.14	ENST00000341776.7:ENST00000397311.4	protein_coding	protein_coding	protein_coding	protein_coding	3	135	2	3.36168	3.7142299999999997	4.06678	0.00544536	0.00298648	0.0486855	0.0303704
chr17	55276783	55276883	6757226	0	+	0.38	(0.36,0.39]	chr17	681704	83	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	385	2	2.53861	3.7141450000000003	4.88968	0.030599	7.31439e-5	0.119094	0.00217189
chr7	107976571	107976669	3677384	0	-	0.571429	(0.523,0.58]	chr7	354436	3	INTRON	INTRON	LAMB1	ENSG00000091136.15	ENST00000676574.1:ENST00000678892.1:ENST00000677144.1:ENST00000677793.1:ENST00000677588.1:ENST00000678704.1:ENST00000677101.1:ENST00000222399.11:ENST00000677485.1:ENST00000679200.1:ENST00000393561.6:ENST00000677801.1:ENST00000678698.1:ENST00000676777.1:ENST00000678232.1:ENST00000677652.1:ENST00000678346.1:ENST00000679173.1:ENST00000679244.1:ENST00000676920.1:ENST00000678266.1:ENST00000677994.1:ENST00000677734.1:ENST00000393560.5:ENST00000439976.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	2.52319	3.7140950000000004	4.905	0.0563605	0.0287266	0.154188	0.123764
chr17	72567402	72567501	6963985	0	-	0.545455	(0.523,0.58]	chr17	710389	330	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	6	98	2	1.84115	3.713975	5.5868	0.0455039	0.020474	0.154572	0.0979776
chr13	48255236	48255336	5586266	0	+	0.55	(0.523,0.58]	chr13	550893	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ITM2B	ENSG00000136156.15	ENST00000649266.1:ENST00000378549.5:ENST00000647800.2:ENST00000650479.1:ENST00000649452.1:ENST00000648898.1:ENST00000648586.1:ENST00000648312.1:ENST00000607866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	79	2	1.76996	3.713725	5.65749	0.0693079	0.0182707	0.194071	0.0921579
chr17	38727896	38727996	6729362	0	+	0.47	(0.45,0.485]	chr17	676371	24	UTR3	UTR3:EXON_MRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5	protein_coding	protein_coding	protein_coding	protein_coding	7	263	2	2.95317	3.713605	4.47404	0.00422111	0.00322613	0.0421724	0.0319521
chr7	129832882	129832980	3706522	0	-	0.530612	(0.523,0.58]	chr7	356184	23	UTR3	UTR3:EXON_MRNA	UBE2H	ENSG00000186591.13	ENST00000355621.8:ENST00000649897.1	protein_coding	protein_coding	protein_coding	protein_coding	2	132	2	3.27377	3.713515	4.15326	0.0137592	0.00699158	0.0814923	0.0555241
chr13	97339624	97339724	5631980	0	+	0.49	(0.485,0.523]	chr13	553188	48	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	214	2	2.98147	3.713405	4.44534	0.0261434	1.82432e-4	0.110034	0.00423714
chr10	75729146	75729246	4523455	0	+	0.41	(0.39,0.419]	chr10	432271	812	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	113	2	2.14011	3.71327	5.28643	0.041475	0.026865	0.136301	0.11904000000000001
chr11	14335200	14335300	4999199	0	-	0.48	(0.45,0.485]	chr11	483723	265	INTRON	INTRON	RRAS2	ENSG00000133818.14	ENST00000256196.9:ENST00000537760.5:ENST00000529237.5:ENST00000534746.5:ENST00000526063.5:ENST00000532814.5:ENST00000531807.5:ENST00000532950.5:ENST00000531421.5:ENST00000526717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	44	2	2.92826	3.71306	4.49786	0.101311	0.0301249	0.196131	0.126768
chr3	42216504	42216604	1451716	0	+	0.46	(0.45,0.485]	chr3	154959	40	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2:ENST00000327628.10:ENST00000396175.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.92826	3.71306	4.49786	0.101311	0.0301249	0.196131	0.126768
chr3	61813181	61813281	1489133	0	+	0.48	(0.45,0.485]	chr3	160092	419	INTRON	INTRON	PTPRG	ENSG00000144724.20	ENST00000474889.6:ENST00000295874.14	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.92826	3.71306	4.49786	0.101311	0.0301249	0.196131	0.126768
chr1	246115405	246115505	701936	0	-	0.37	(0.36,0.39]	chr1	82410	191	INTRON	INTRON	SMYD3	ENSG00000185420.19	ENST00000630181.2:ENST00000490107.6:ENST00000492487.5:ENST00000391836.3:ENST00000453676.5:ENST00000462422.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.48379	3.712865	4.94194	0.0714535	0.064883	0.198579	0.162218
chr4	118806054	118806154	2315305	0	-	0.39	(0.36,0.39]	chr4	232616	1	SS3_PROX	SS3_PROX:INTRON	SEC24D	ENSG00000150961.15	ENST00000280551.11:ENST00000514561.5:ENST00000419654.6:ENST00000509818.5:ENST00000506622.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.48379	3.712865	4.94194	0.0714535	0.064883	0.198579	0.162218
chr20	44404078	44404177	7482956	0	+	0.444444	(0.419,0.45]	chr20	779645	8	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	249	2	3.68321	3.712105	3.741	0.0188635	8.81286e-4	0.0941462	0.0129974
chr21	44872653	44872753	7678569	0	-	0.57	(0.523,0.58]	chr21	802774	4	SS5_PROX	SS5_PROX:INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	18	1123	2	3.50176	3.711825	3.92189	0.00127523	7.30755e-4	0.0217654	0.0113963
chr6	159732874	159732973	3064739	0	+	0.343434	(0.33,0.36]	chr6	297785	48	INTRON	INTRON	WTAP	ENSG00000146457.16	ENST00000358372.8:ENST00000650096.1:ENST00000614346.4:ENST00000621533.5:ENST00000494513.1:ENST00000631126.2:ENST00000337387.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	2.58715	3.711265	4.83538	0.0679743	0.0587055	0.176098	0.164413
chr2	127496248	127496348	1266277	0	-	0.46	(0.45,0.485]	chr2	136446	1	SS3_PROX	SS3_PROX:INTRON	IWS1	ENSG00000163166.15	ENST00000295321.9	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.58493	3.71124	4.83755	0.06646	0.0263561	0.162385	0.118015
chr3	30636546	30636646	1433392	0	+	0.26	[0,0.29]	chr3	153006	33	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4:ENST00000673250.1:ENST00000672866.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	341	2	3.54294	3.71098	3.87902	0.00689295	1.57142e-4	0.0553728	0.00381876
chr12	132955642	132955742	5542088	0	-	0.61	(0.58,1]	chr12	547064	70	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	2.47204	3.71043	4.94882	0.0623526	0.0354433	0.181127	0.127188
chr1	225649387	225649487	673969	0	-	0.27	[0,0.29]	chr1	79189	693	INTRON	INTRON	ENAH	ENSG00000154380.19	ENST00000366843.7:ENST00000366844.7:ENST00000635051.1:ENST00000284563.7	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.73208	3.710315	4.68855	0.0554735	0.0409813	0.154188	0.147516
chr3	73004741	73004840	1502807	0	+	0.313131	(0.29,0.33]	chr3	160766	62	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000495566.1:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	154	2	2.98369	3.7101450000000002	4.4366	0.0248906	7.43934e-4	0.10758	0.0115713
chr16	85399532	85399632	6517066	0	+	0.54	(0.523,0.58]	chr16	646391	402	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.98385	3.70991	4.43597	0.0505794	0.0313935	0.148456	0.127822
chr2	11557565	11557663	720442	0	+	0.540816	(0.523,0.58]	chr2	84105	4	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000628795.2:ENST00000381486.7:ENST00000263834.9:ENST00000389825.7:ENST00000381483.6:ENST00000234142.9:ENST00000470980.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	160	2	2.50981	3.70987	4.90993	0.0561618	1.72685e-4	0.154188	0.00408359
chr16	29268414	29268514	6433521	0	+	0.59	(0.58,1]	chr16	636745	163	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	3	142	2	3.4034	3.709815	4.01623	0.00867516	0.00161478	0.0624342	0.0199131
chr10	133363333	133363433	4783492	0	-	0.52	(0.485,0.523]	chr10	457553	4	SS3_PROX	SS3_PROX:INTRON	ECHS1	ENSG00000127884.5	ENST00000368547.4	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.45723	3.70981	4.96239	0.0700289	0.0518747	0.195209	0.148503
chr17	38747096	38747190	6895647	0	-	0.574468	(0.523,0.58]	chr17	700405	6	INTRON	INTRON	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.29891	3.7097049999999996	5.1205	0.0454288	0.0416463	0.154539	0.136301
chr11	70810968	70811068	5062393	0	-	0.61	(0.58,1]	chr11	492713	34	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.52834	3.708895	4.88945	0.0388928	0.0249502	0.131324	0.114418
chr17	44040656	44040756	6910323	0	-	0.5	(0.485,0.523]	chr17	703394	4	SS3_PROX	SS3_PROX:INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.51105	3.708235	4.90542	0.0561086	0.029737800000000002	0.154188	0.126591
chr2	21017436	21017532	1100606	0	-	0.510417	(0.485,0.523]	chr2	119970	4	INTRON	INTRON	APOB	ENSG00000084674.15	ENST00000233242.5:ENST00000673739.1:ENST00000673882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	58	2	2.51105	3.708235	4.90542	0.0561086	0.029737800000000002	0.154188	0.126591
chr5	123513269	123513369	2523485	0	+	0.54	(0.523,0.58]	chr5	250487	3	INTRON	INTRON	CSNK1G3	ENSG00000151292.18	ENST00000345990.9:ENST00000508708.1:ENST00000512718.7:ENST00000511130.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	57	2	2.34664	3.7081049999999998	5.06957	0.0448011	0.0413259	0.148318	0.140478
chr12	776149	776249	5148861	0	+	0.48	(0.45,0.485]	chr12	500570	215	INTRON	INTRON	WNK1	ENSG00000060237.19	ENST00000315939.11:ENST00000340908.9:ENST00000535572.5:ENST00000537687.5:ENST00000530271.6:ENST00000447667.2	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	2.90749	3.708005	4.50852	0.0588897	0.0302873	0.15607	0.126768
chr3	120629517	120629615	1887402	0	-	0.306122	(0.29,0.33]	chr3	191478	6	INTRON	INTRON	HGD	ENSG00000113924.12	ENST00000283871.10:ENST00000492108.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	58	2	2.98868	3.7079750000000002	4.42727	0.0484929	0.0335282	0.145074	0.133139
chr20	62921759	62921858	7585552	0	-	0.363636	(0.36,0.39]	chr20	792927	70	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8	protein_coding	protein_coding	protein_coding	protein_coding	6	315	2	3.41947	3.70789	3.99631	0.00528504	0.00166969	0.047841	0.020363
chr6	1855835	1855935	3081431	0	-	0.43	(0.419,0.45]	chr6	299482	1129	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	178	2	2.55987	3.7078700000000002	4.85587	0.0605273	3.34522e-4	0.158506	0.00656251
chr11	70557330	70557430	5059846	0	-	0.62	(0.58,1]	chr11	492663	540	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	2.45703	3.707585	4.95814	0.0933945	0.0074469	0.188571	0.0553519
chr2	239273583	239273683	1391444	0	-	0.67	(0.58,1]	chr2	148740	220	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	47	2	2.45703	3.707585	4.95814	0.0933945	0.0074469	0.188571	0.0553519
chr21	43720452	43720547	7623796	0	+	0.610526	(0.58,1]	chr21	796688	7	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000476084.1:ENST00000470029.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.45703	3.707585	4.95814	0.0933945	0.0074469	0.188571	0.0553519
chr8	75519767	75519867	3846172	0	+	0.35	(0.33,0.36]	chr8	369224	239	INTRON	INTRON	HNF4G	ENSG00000164749.13	ENST00000494318.5:ENST00000396419.5:ENST00000354370.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.77362	3.707465	4.64131	0.0867669	0.041944	0.182221	0.149108
chr10	45856693	45856793	4678136	0	-	0.47	(0.45,0.485]	chr10	446183	14	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000610690.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	2	125	2	2.80521	3.707305	4.6094	0.0681544	4.87276e-4	0.164505	0.00859082
chr9	129499061	129499159	4250767	0	+	0.642857	(0.58,1]	chr9	404726	2	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	99	2	3.23007	3.7069650000000003	4.18386	0.0271644	9.90719e-4	0.112113	0.0141138
chr7	47358803	47358903	3587379	0	-	0.53	(0.523,0.58]	chr7	346030	121	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	113	2	3.42417	3.706555	3.98894	0.0252027	0.00237791	0.108002	0.026
chr3	32819332	32819432	1438885	0	+	0.46	(0.45,0.485]	chr3	153400	4	SS5_PROX	SS5_PROX:INTRON	TRIM71	ENSG00000206557.6	ENST00000383763.6	protein_coding	protein_coding	protein_coding	protein_coding	3	163	2	3.2476	3.7065399999999995	4.16548	0.00745037	0.0056886	0.0576451	0.046716
chr20	32476627	32476726	7543634	0	-	0.585859	(0.58,1]	chr20	787372	15	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	2.74846	3.70631	4.66416	0.0605281	0.0144381	0.158506	0.0833845
chr21	45475535	45475635	7631022	0	+	0.69	(0.58,1]	chr21	797678	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.74846	3.70631	4.66416	0.0605281	0.0144381	0.158506	0.0833845
chr9	133803388	133803488	4428425	0	-	0.64	(0.58,1]	chr9	423268	52	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.74846	3.70631	4.66416	0.0605281	0.0144381	0.158506	0.0833845
chr10	45857991	45858091	4678149	0	-	0.49	(0.485,0.523]	chr10	446183	27	INTRON	INTRON	PARGP1	ENSG00000239883.9	ENST00000440803.7:ENST00000610690.1	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:processed_transcript	2	116	2	3.0179	3.706225	4.39455	0.0479403	8.03516e-4	0.144601	0.012189
chr12	23949861	23949961	5388527	0	-	0.62	(0.58,1]	chr12	528203	2	SS3_PROX	SS3_PROX:INTRON	SOX5	ENSG00000134532.19	ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2:ENST00000536729.2:ENST00000446891.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	87	2	2.78834	3.706185	4.62403	0.0578275	0.00543757	0.154343	0.0454065
chr11	57792359	57792452	4857867	0	+	0.505376	(0.485,0.523]	chr11	465195	3	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000530068.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	355	2	3.55585	3.7060500000000003	3.85625	0.0035764	8.51873e-4	0.0383669	0.0126845
chr2	38576372	38576470	1124496	0	-	0.306122	(0.29,0.33]	chr2	123083	26	INTRON	INTRON	HNRNPLL	ENSG00000143889.16	ENST00000449105.8:ENST00000409636.5:ENST00000358367.8:ENST00000608859.5:ENST00000378915.7:ENST00000272249.7:ENST00000409328.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.89841	3.7057100000000003	4.51301	0.0885563	0.0313146	0.183874	0.127822
chr14	89205134	89205234	6026146	0	-	0.38	(0.36,0.39]	chr14	591423	143	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000555010.1:ENST00000557718.5:ENST00000553353.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	2.85025	3.705505	4.56076	0.103289	0.0373341	0.197541	0.139793
chr22	40515768	40515868	7814442	0	-	0.38	(0.36,0.39]	chr22	819478	236	INTRON	INTRON	MRTFA	ENSG00000196588.21	ENST00000651595.2:ENST00000396617.7:ENST00000355630.10:ENST00000652095.2:ENST00000402042.7:ENST00000651694.1:ENST00000422851.1:ENST00000463769.7	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.85025	3.705505	4.56076	0.103289	0.0373341	0.197541	0.139793
chr13	75458874	75458974	5727773	0	-	0.44	(0.419,0.45]	chr13	561722	817	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	3	74	2	2.0464	3.705175	5.36395	0.0564353	0.0407485	0.171982	0.135868
chr1	8700857	8700957	394563	0	-	0.27	[0,0.29]	chr1	45065	441	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000468247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	48	2	2.42686	3.70495	4.98304	0.0991518	0.00935344	0.194208	0.0646157
chr20	36855784	36855884	7557059	0	-	0.57	(0.523,0.58]	chr20	789155	160	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	2	113	2	3.4477	3.704765	3.96183	0.0242383	0.00255427	0.106588	0.0273114
chr13	98415816	98415915	5636427	0	+	0.59596	(0.58,1]	chr13	553617	34	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000457029.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	64	2	1.99855	3.704745	5.41094	0.103709	0.00240622	0.197611	0.0261006
chr9	134365782	134365882	4261081	0	+	0.62	(0.58,1]	chr9	406311	388	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	68	2	2.38507	3.7041049999999998	5.02314	0.057029	0.00638322	0.154343	0.0501889
chr1	31580410	31580507	81051	0	+	0.639175	(0.58,1]	chr1	9290	2	INTRON	INTRON	LINC01226:TINAGL1	ENSG00000284543.1:ENSG00000142910.16	ENST00000639839.1:ENST00000640226.1:ENST00000457433.6:ENST00000271064.12:ENST00000461030.5:ENST00000478398.5:ENST00000481165.5:ENST00000537531.2:ENST00000468635.5:ENST00000498429.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	3	82	2	2.09761	3.7039850000000003	5.31036	0.0670151	0.00312721	0.162928	0.0311915
chr17	38742124	38742222	6895596	0	-	0.520408	(0.485,0.523]	chr17	700401	13	INTRON	INTRON	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000611883.4:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.28678	3.70385	5.12092	0.046853	0.0414411	0.156896	0.136301
chr14	91221923	91222020	5899576	0	+	0.587629	(0.58,1]	chr14	576435	13	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	134	2	2.8321	3.7032	4.5743	0.0262282	3.00208e-4	0.110287	0.00607383
chr9	114156905	114157003	4225714	0	+	0.663265	(0.58,1]	chr9	400740	5	INTRON	INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.78186	3.702945	4.62403	0.0578275	0.0342923	0.154343	0.13449
chr14	58419741	58419841	5989778	0	-	0.47	(0.45,0.485]	chr14	587526	74	INTRON	INTRON	TIMM9	ENSG00000100575.14	ENST00000395159.7:ENST00000216463.8:ENST00000555593.5:ENST00000556007.6:ENST00000557397.5:ENST00000556367.6:ENST00000555930.6:ENST00000555404.5:ENST00000555097.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.69444	3.70277	4.7111	0.0781398	0.0471378	0.175203	0.156915
chr20	17630361	17630461	7531909	0	-	0.47	(0.45,0.485]	chr20	786004	4	SS3_PROX	SS3_PROX:INTRON	RRBP1	ENSG00000125844.17	ENST00000360807.8:ENST00000377807.6:ENST00000246043.8:ENST00000377813.6:ENST00000455029.3:ENST00000495501.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.69444	3.70277	4.7111	0.0781398	0.0471378	0.175203	0.156915
chr16	85586732	85586832	6518940	0	+	0.73	(0.58,1]	chr16	646396	300	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.71042	3.70276	4.6951	0.0521567	0.0396128	0.148503	0.143388
chr8	102395289	102395389	4032015	0	-	0.44	(0.419,0.45]	chr8	385211	333	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.21736	3.7027	5.18804	0.058705	0.051668	0.176098	0.148503
chr13	113051311	113051410	5656148	0	+	0.686869	(0.58,1]	chr13	555180	41	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	72	2	2.58616	3.7023900000000003	4.81862	0.0406424	0.0102696	0.135868	0.0678072
chr10	28558934	28559034	4469674	0	+	0.32	(0.29,0.33]	chr10	427649	205	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	69	2	1.9237	3.702385	5.48107	0.0654677	0.0222022	0.187786	0.101857
chr20	3344829	3344929	7516236	0	-	0.32	(0.29,0.33]	chr20	784720	7	INTRON	INTRON	DNAAF9	ENSG00000088854.13	ENST00000252032.10	protein_coding	protein_coding	protein_coding	protein_coding	3	69	2	1.9237	3.702385	5.48107	0.0654677	0.0222022	0.187786	0.101857
chr17	76548683	76548782	6977092	0	-	0.545455	(0.523,0.58]	chr17	712268	24	INTRON	INTRON	CYGB:ENSG00000267546	ENSG00000161544.10:ENSG00000267546.2	ENST00000589145.1:ENST00000589963.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	60	2	2.75313	3.70235	4.65157	0.0787008	0.0173428	0.175203	0.0927775
chr20	25494586	25494684	7539899	0	-	0.683673	(0.58,1]	chr20	787018	27	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5:ENST00000461642.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	63	2	2.1424	3.7018899999999997	5.26138	0.0374477	0.021217	0.139793	0.0996078
chr11	115321939	115322039	5129305	0	-	0.38	(0.36,0.39]	chr11	498106	346	INTRON	INTRON	CADM1	ENSG00000182985.18	ENST00000537140.5:ENST00000452722.7:ENST00000331581.11:ENST00000542447.6:ENST00000537058.5:ENST00000536727.5:ENST00000545380.5:ENST00000541434.5:ENST00000543249.1:ENST00000540951.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	61	2	2.46174	3.70184	4.94194	0.064883	0.0361885	0.162218	0.139793
chr12	76067673	76067773	5455892	0	-	0.42	(0.419,0.45]	chr12	536727	2	SS3_PROX	SS3_PROX:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	74	2	2.08138	3.701665	5.32195	0.0528422	0.0431627	0.167062	0.138403
chr20	10664813	10664913	7525334	0	-	0.46	(0.45,0.485]	chr20	785558	4	INTRON	INTRON	JAG1	ENSG00000101384.12	ENST00000254958.10	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.50637	3.7016099999999996	4.89685	0.0614781	0.0310626	0.158506	0.127822
chr17	37022113	37022213	6726421	0	+	0.47	(0.45,0.485]	chr17	675960	7	INTRON	INTRON	AATF	ENSG00000275700.6	ENST00000680340.1:ENST00000680356.1:ENST00000616434.2:ENST00000680579.1:ENST00000681800.1:ENST00000680330.1:ENST00000619387.5:ENST00000679997.1:ENST00000681062.1:ENST00000679881.1:ENST00000680782.1:ENST00000679600.1:ENST00000616392.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	2.24119	3.70134	5.16149	0.0525018	0.0427653	0.167062	0.13762
chr13	113327587	113327687	5753206	0	-	0.45	(0.419,0.45]	chr13	564094	11	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.58571	3.7012099999999997	4.81671	0.08258	0.0613171	0.18013	0.179396
chr15	55835652	55835748	6272298	0	-	0.4375	(0.419,0.45]	chr15	618219	10	INTRON	INTRON	NEDD4	ENSG00000069869.17	ENST00000435532.8:ENST00000338963.6:ENST00000508342.5:ENST00000503468.5:ENST00000508871.5:ENST00000648451.1:ENST00000506154.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.58571	3.7012099999999997	4.81671	0.08258	0.0613171	0.18013	0.179396
chr7	97135487	97135587	3422932	0	+	0.42	(0.419,0.45]	chr7	330493	172	INTRON	INTRON	SDHAF3	ENSG00000196636.8	ENST00000432641.3:ENST00000489852.1:ENST00000360382.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.58571	3.7012099999999997	4.81671	0.08258	0.0613171	0.18013	0.179396
chr8	61683552	61683649	3986684	0	-	0.43299	(0.419,0.45]	chr8	381436	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ASPH	ENSG00000198363.18	ENST00000379454.9:ENST00000541428.5:ENST00000522349.5:ENST00000445642.6:ENST00000356457.9:ENST00000519234.5:ENST00000518068.5:ENST00000517903.5:ENST00000517847.6:ENST00000522835.5:ENST00000518306.5:ENST00000517856.5:ENST00000517928.1:ENST00000389204.8:ENST00000522603.5:ENST00000379449.10:ENST00000517661.5:ENST00000522325.1:ENST00000522036.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	45	2	2.58571	3.7012099999999997	4.81671	0.08258	0.0613171	0.18013	0.179396
chr12	48998790	48998890	5223231	0	+	0.56	(0.523,0.58]	chr12	506969	1	SS5_PROX	SS5_PROX:INTRON	DDN-AS1	ENSG00000257913.3	ENST00000552933.2:ENST00000547866.1:ENST00000552284.1:ENST00000547395.1	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	2.68276	3.70099	4.71922	0.0721601	0.0464998	0.168159	0.156036
chrX	153646360	153646458	7960826	0	+	0.591837	(0.58,1]	chrX	833164	34	INTRON	INTRON	DUSP9	ENSG00000130829.18	ENST00000477033.1:ENST00000370167.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	2.6577	3.70058	4.74346	0.0695799	0.0121457	0.167028	0.0754623
chr10	35449672	35449772	4476809	0	+	0.62	(0.58,1]	chr10	428120	151	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.09276	3.7001150000000003	5.30747	0.0619333	0.0196049	0.180615	0.0955413
chr16	2163920	2164001	6372941	0	+	0.641975	(0.58,1]	chr16	629421	1	CDS_START	CDS_START:CDS:EXON_MRNA	TRAF7	ENSG00000131653.13	ENST00000565383.5:ENST00000569686.5:ENST00000326181.11:ENST00000567653.5:ENST00000564067.5:ENST00000567645.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	2.09276	3.7001150000000003	5.30747	0.0619333	0.0196049	0.180615	0.0955413
chr2	239343685	239343785	1392147	0	-	0.65	(0.58,1]	chr2	148752	192	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	53	2	2.09276	3.7001150000000003	5.30747	0.0619333	0.0196049	0.180615	0.0955413
chr8	102373014	102373114	4031792	0	-	0.59	(0.58,1]	chr8	385211	110	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.09276	3.7001150000000003	5.30747	0.0619333	0.0196049	0.180615	0.0955413
chr20	25495374	25495472	7539907	0	-	0.581633	(0.58,1]	chr20	787018	35	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5:ENST00000461642.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.70505	3.700075	4.6951	0.0521567	0.0165599	0.148503	0.0917029
chr12	81113591	81113691	5283372	0	+	0.3	(0.29,0.33]	chr12	514456	35	INTRON	INTRON	ACSS3	ENSG00000111058.8	ENST00000549175.1:ENST00000261206.7:ENST00000548058.6	protein_coding	protein_coding	protein_coding	protein_coding	3	77	2	2.67376	3.700055	4.72635	0.0672935	0.0132113	0.163263	0.0793133
chr6	169651729	169651829	3304381	0	-	0.48	(0.45,0.485]	chr6	319870	4	SS5_PROX	SS5_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000546525.5:ENST00000441385.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	156	2	3.62759	3.7000200000000003	3.77245	0.0149038	0.00212514	0.0834418	0.0240165
chr12	42219362	42219462	5416909	0	-	0.46	(0.45,0.485]	chr12	530176	65	INTRON	INTRON	YAF2	ENSG00000015153.15	ENST00000534854.7:ENST00000327791.8:ENST00000380790.4:ENST00000552109.5:ENST00000547622.5:ENST00000547351.5:ENST00000551268.5:ENST00000548661.5:ENST00000546726.5:ENST00000547724.1:ENST00000552928.5:ENST00000548917.1:ENST00000547254.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.75654	3.7	4.64346	0.0850039	0.0419966	0.181766	0.149115
chr16	14090624	14090724	6399587	0	+	0.46	(0.45,0.485]	chr16	632159	109	INTRON	INTRON	MRTFB	ENSG00000186260.17	ENST00000571589.6:ENST00000574998.5:ENST00000572400.5:ENST00000574045.5:ENST00000575537.5:ENST00000318282.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	43	2	2.75654	3.7	4.64346	0.0850039	0.0419966	0.181766	0.149115
chr20	36851998	36852097	7557021	0	-	0.616162	(0.58,1]	chr20	789155	122	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.50987	3.6999699999999995	4.89007	0.0865901	0.00872525	0.182221	0.0612699
chr6	3393836	3393936	3087429	0	-	0.6	(0.58,1]	chr6	299778	160	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.50987	3.6999699999999995	4.89007	0.0865901	0.00872525	0.182221	0.0612699
chr7	92672035	92672134	3637319	0	-	0.434343	(0.419,0.45]	chr7	350310	1	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8:ENST00000473078.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	126	2	3.26132	3.699915	4.13851	0.0394801	0.00222652	0.13291	0.0248148
chr10	75499092	75499192	4521149	0	+	0.5	(0.485,0.523]	chr10	432249	475	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	114	2	3.10938	3.699845	4.29031	0.0416572	0.00107516	0.136301	0.0148869
chr11	72763771	72763871	5070579	0	-	0.55	(0.523,0.58]	chr11	493498	40	INTRON	INTRON	ARAP1:STARD10	ENSG00000186635.15:ENSG00000214530.10	ENST00000359373.9:ENST00000334805.11:ENST00000543304.5:ENST00000538536.5:ENST00000538437.5:ENST00000545082.5:ENST00000537947.5:ENST00000542989.5:ENST00000546314.5:ENST00000535267.1:ENST00000539138.1:ENST00000535054.1:ENST00000536290.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	2.74768	3.699625	4.65157	0.0787008	0.0411359	0.175203	0.147756
chr15	68819005	68819104	6312145	0	-	0.535354	(0.523,0.58]	chr15	622253	14	INTRON	INTRON	ANP32A	ENSG00000140350.15	ENST00000465139.6:ENST00000409628.6:ENST00000560303.1:ENST00000495420.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.74768	3.699625	4.65157	0.0787008	0.0411359	0.175203	0.147756
chr11	57303011	57303105	5038246	0	-	0.595745	(0.58,1]	chr11	488041	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1:ENST00000427750.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.84993	3.6996000000000002	4.54927	0.0643046	0.0297842	0.161669	0.126591
chr11	70818763	70818863	5062471	0	-	0.62	(0.58,1]	chr11	492713	112	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.84993	3.6996000000000002	4.54927	0.0643046	0.0297842	0.161669	0.126591
chr7	242102	242202	3306076	0	+	0.6	(0.58,1]	chr7	320161	328	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.84993	3.6996000000000002	4.54927	0.0643046	0.0297842	0.161669	0.126591
chr8	727752	727852	3933008	0	-	0.6	(0.58,1]	chr8	376060	114	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.84993	3.6996000000000002	4.54927	0.0643046	0.0297842	0.161669	0.126591
chr9	133732153	133732237	4427902	0	-	0.654762	(0.58,1]	chr9	423122	3	SS5_PROX	SS5_PROX:INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000427237.6:ENST00000371867.5:ENST00000298628.6	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.84993	3.6996000000000002	4.54927	0.0643046	0.0297842	0.161669	0.126591
chr17	43547213	43547313	6739037	0	+	0.48	(0.45,0.485]	chr17	678633	20	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	43	2	2.5616	3.6995750000000003	4.83755	0.06646	0.0598406	0.177269	0.162385
chr5	139658755	139658855	2549748	0	+	0.48	(0.45,0.485]	chr5	253168	72	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.5616	3.6995750000000003	4.83755	0.06646	0.0598406	0.177269	0.162385
chr10	112195247	112195346	4760739	0	-	0.353535	(0.33,0.36]	chr10	455255	116	INTRON	INTRON	GPAM	ENSG00000119927.14	ENST00000480130.5:ENST00000498541.1	protein_coding	processed_transcript	protein_coding	processed_transcript	7	114	2	1.8969	3.699465	5.50203	0.0397326	0.0265895	0.143708	0.111433
chr11	70869911	70870011	5062985	0	-	0.54	(0.523,0.58]	chr11	492724	432	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000425049.1:ENST00000645599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.61478	3.6993099999999997	4.78384	0.0663135	0.052707	0.167062	0.162385
chr17	77349799	77349899	6803857	0	+	0.54	(0.523,0.58]	chr17	686742	256	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.61478	3.6993099999999997	4.78384	0.0663135	0.052707	0.167062	0.162385
chr6	36678939	36679039	2906378	0	+	0.7	(0.58,1]	chr6	285233	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CDKN1A	ENSG00000124762.14	ENST00000615513.4:ENST00000448526.6:ENST00000459970.1:ENST00000405375.5:ENST00000244741.10:ENST00000373711.3:ENST00000478800.1:ENST00000462537.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	162	2	2.50095	3.6991949999999996	4.89744	0.0334226	1.06039e-4	0.12421	0.00286177
chr12	23829284	23829384	5387314	0	-	0.42	(0.419,0.45]	chr12	528175	663	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000537393.5:ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	66	2	2.77553	3.69913	4.62273	0.103601	0.0195253	0.197541	0.0999784
chr10	47532981	47533081	4680512	0	-	0.49	(0.485,0.523]	chr10	446443	91	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	2	58	2	2.55201	3.6990600000000002	4.84611	0.0608067	0.0272692	0.158506	0.119337
chr19	15331335	15331435	7342364	0	-	0.5	(0.485,0.523]	chr19	760398	1	SS5_PROX	SS5_PROX:INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	58	2	2.55201	3.6990600000000002	4.84611	0.0608067	0.0272692	0.158506	0.119337
chr12	132546207	132546307	5353078	0	+	0.63	(0.58,1]	chr12	523670	179	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.63525	3.699045	4.76284	0.0471737	0.0459151	0.154743	0.143232
chr16	8856788	8856885	6546165	0	-	0.639175	(0.58,1]	chr16	651451	11	INTRON	INTRON	CARHSP1	ENSG00000153048.11	ENST00000396593.6:ENST00000611932.4:ENST00000618335.4:ENST00000619881.4:ENST00000610831.4:ENST00000614449.4:ENST00000311052.10:ENST00000561530.5:ENST00000567554.5:ENST00000565287.5:ENST00000567908.5:ENST00000570125.5:ENST00000568117.5:ENST00000568968.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.63525	3.699045	4.76284	0.0471737	0.0459151	0.154743	0.143232
chr21	46651305	46651405	7634808	0	+	0.66	(0.58,1]	chr21	798581	1	SS3_PROX	SS3_PROX:INTRON	PRMT2	ENSG00000160310.19	ENST00000451211.6:ENST00000458387.6:ENST00000397638.6:ENST00000291705.11:ENST00000397637.5:ENST00000334494.8:ENST00000355680.8:ENST00000440086.5:ENST00000482508.5:ENST00000481861.1:ENST00000455177.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.63525	3.699045	4.76284	0.0471737	0.0459151	0.154743	0.143232
chr5	139663103	139663202	2549792	0	+	0.636364	(0.58,1]	chr5	253172	31	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1:ENST00000509238.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.63525	3.699045	4.76284	0.0471737	0.0459151	0.154743	0.143232
chr7	47367465	47367565	3587466	0	-	0.59	(0.58,1]	chr7	346030	208	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.63525	3.699045	4.76284	0.0471737	0.0459151	0.154743	0.143232
chr9	134346819	134346919	4260891	0	+	0.62	(0.58,1]	chr9	406311	198	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.63525	3.699045	4.76284	0.0471737	0.0459151	0.154743	0.143232
chr14	104873755	104873855	5925949	0	+	0.68	(0.58,1]	chr14	579942	48	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	3	69	2	2.70293	3.699015	4.6951	0.0521567	0.00981512	0.148503	0.0664239
chr16	81614118	81614217	6509437	0	+	0.59596	(0.58,1]	chr16	645921	32	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	135	2	3.13672	3.698805	4.26089	0.0147505	7.87512e-4	0.0828332	0.0120243
chr22	42986036	42986135	7823993	0	-	0.434343	(0.419,0.45]	chr22	820626	263	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.7072600000000002	3.6987950000000005	4.69033	0.0958674	0.0496323	0.189038	0.160725
chr6	2232232	2232332	3085206	0	-	0.37	(0.36,0.39]	chr6	299526	564	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5	protein_coding	protein_coding	protein_coding	protein_coding	3	74	2	2.24775	3.698665	5.14958	0.0493212	0.0372837	0.146207	0.139793
chr2	128305161	128305261	1269737	0	-	0.49	(0.485,0.523]	chr2	136855	150	INTRON	INTRON	HS6ST1	ENSG00000136720.7	ENST00000469019.1:ENST00000259241.7:ENST00000494089.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	57	2	2.13331	3.69853	5.26375	0.0626854	0.0335928	0.181933	0.124319
chr2	127740252	127740352	1267008	0	-	0.48	(0.45,0.485]	chr2	136574	18	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5	protein_coding	protein_coding	protein_coding	protein_coding	5	256	2	3.59189	3.698515	3.80514	0.00961186	6.92506e-4	0.0659937	0.0109657
chr7	4698159	4698259	3309500	0	+	0.43	(0.419,0.45]	chr7	320808	149	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.52086	3.69842	4.87598	0.0768574	0.0683849	0.193274	0.174882
chr11	68421398	68421497	4883184	0	+	0.525253	(0.523,0.58]	chr11	470622	45	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	206	2	3.2780300000000002	3.6976750000000003	4.11732	0.0108648	0.00168626	0.0707085	0.0204375
chr2	167956769	167956869	1306926	0	-	0.34	(0.33,0.36]	chr2	140174	8	INTRON	INTRON	STK39	ENSG00000198648.11	ENST00000487143.5:ENST00000355999.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	2.33388	3.6965399999999997	5.0592	0.0504445	0.0452305	0.154539	0.148216
chr5	14151267	14151366	2383429	0	+	0.30303	(0.29,0.33]	chr5	238468	70	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000502816.1:ENST00000505971.5:ENST00000512070.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	57	2	2.31614	3.69645	5.07676	0.0447268	0.0412683	0.154526	0.136301
chr16	85456807	85456907	6517639	0	+	0.63	(0.58,1]	chr16	646391	975	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.09824	3.69639	4.29454	0.0341637	0.0305531	0.126768	0.125129
chr20	33009374	33009470	7457382	0	+	0.520833	(0.485,0.523]	chr20	776365	3	INTRON	INTRON	BPIFB2	ENSG00000078898.7	ENST00000170150.4	protein_coding	protein_coding	protein_coding	protein_coding	3	156	2	3.14591	3.696155	4.2464	0.0197057	0.00121376	0.0958249	0.0162693
chr17	57403650	57403748	6761244	0	+	0.489796	(0.485,0.523]	chr17	682121	18	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.67159	3.695615	4.71964	0.0718646	0.0478226	0.168159	0.1588
chr7	66087077	66087162	3379048	0	+	0.517647	(0.485,0.523]	chr7	326137	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASL	ENSG00000126522.17	ENST00000672586.1:ENST00000304874.14:ENST00000673518.1:ENST00000672498.1:ENST00000673350.1:ENST00000487982.5:ENST00000380839.9:ENST00000395332.8:ENST00000672676.1:ENST00000362000.10:ENST00000395331.4:ENST00000671817.1:ENST00000673594.1:ENST00000673149.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	42	2	2.67159	3.695615	4.71964	0.0718646	0.0478226	0.168159	0.1588
chr2	134344133	134344231	897680	0	+	0.489796	(0.485,0.523]	chr2	101245	20	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.49197	3.695335	4.8987	0.10114	0.0129327	0.196131	0.0778105
chr6	158042715	158042815	3059925	0	+	0.49	(0.485,0.523]	chr6	297390	87	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	52	2	2.49197	3.695335	4.8987	0.10114	0.0129327	0.196131	0.0778105
chr7	127908111	127908211	3470804	0	+	0.49	(0.485,0.523]	chr7	335407	29	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.49197	3.695335	4.8987	0.10114	0.0129327	0.196131	0.0778105
chr22	17827243	17827343	7757809	0	-	0.51	(0.485,0.523]	chr22	813055	2	SS5_PROX	SS5_PROX:INTRON	MICAL3	ENSG00000243156.9	ENST00000441493.7:ENST00000672019.1:ENST00000498573.5:ENST00000578984.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	113	2	3.49585	3.695325	3.8948	0.0222996	0.00310434	0.102226	0.0311614
chr8	127800855	127800955	3917846	0	+	0.54	(0.523,0.58]	chr8	374154	44	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000656168.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	2.80981	3.695195	4.58058	0.0860403	0.0364868	0.181766	0.139793
chr16	81686793	81686893	6510179	0	+	0.53	(0.523,0.58]	chr16	645979	78	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	3	90	2	1.9872	3.694725	5.40225	0.0928035	0.00404292	0.188571	0.0371291
chr1	31577860	31577958	81022	0	+	0.510204	(0.485,0.523]	chr1	9275	2	SS5_PROX	SS5_PROX:INTRON	LINC01226:TINAGL1	ENSG00000284543.1:ENSG00000142910.16	ENST00000639839.1:ENST00000640226.1:ENST00000457433.6:ENST00000271064.12:ENST00000461030.5:ENST00000478398.5:ENST00000481165.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	2	130	2	3.26255	3.694565	4.12658	0.0142848	0.00731354	0.0833845	0.0568523
chr16	8711936	8712036	6381509	0	+	0.53	(0.523,0.58]	chr16	631147	285	INTRON	INTRON	ABAT	ENSG00000183044.12	ENST00000564714.5:ENST00000268251.13:ENST00000563992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	161	2	2.40998	3.694565	4.97915	0.0653274	1.39966e-4	0.162385	0.00350012
chr20	21321496	21321596	7449166	0	+	0.55	(0.523,0.58]	chr20	775020	177	INTRON	INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.54344	3.694565	4.84569	0.0610722	0.0599121	0.177269	0.158506
chr7	47549861	47549961	3589316	0	-	0.55	(0.523,0.58]	chr7	346152	104	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.54344	3.694565	4.84569	0.0610722	0.0599121	0.177269	0.158506
chr6	1897916	1898016	3081852	0	-	0.64	(0.58,1]	chr6	299482	1550	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	63	2	1.91069	3.69454	5.47839	0.0607034	0.0145198	0.179468	0.0823104
chr17	82909607	82909707	6819991	0	+	0.63	(0.58,1]	chr17	689430	3	SS5_PROX	SS5_PROX:INTRON	TBCD	ENSG00000141556.22	ENST00000682479.1:ENST00000682722.1:ENST00000684464.1:ENST00000684544.1:ENST00000681983.1:ENST00000684361.1:ENST00000683184.1:ENST00000683282.1:ENST00000684408.1:ENST00000355528.9:ENST00000683444.1:ENST00000684776.1:ENST00000683041.1:ENST00000684760.1:ENST00000684349.1:ENST00000682213.1:ENST00000539345.6:ENST00000684000.1:ENST00000684188.1:ENST00000684429.1:ENST00000682610.1:ENST00000683821.1:ENST00000682654.1:ENST00000576160.6:ENST00000571712.5:ENST00000576996.5:ENST00000574801.5:ENST00000683584.1:ENST00000682099.1:ENST00000684559.1:ENST00000571316.5:ENST00000576760.5:ENST00000572984.5:ENST00000683839.1:ENST00000574975.5:ENST00000572953.5:ENST00000571796.5:ENST00000682315.1:ENST00000574422.1:ENST00000576677.6:ENST00000571618.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	179	2	3.1183	3.6944150000000002	4.27053	0.0152878	1.85156e-4	0.0849465	0.00428794
chr11	590104	590201	4784919	0	+	0.690722	(0.58,1]	chr11	457994	23	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.38295	3.6944	5.00585	0.0730701	0.0323732	0.199669	0.121593
chr16	85369544	85369644	6516766	0	+	0.59	(0.58,1]	chr16	646391	102	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.38295	3.6944	5.00585	0.0730701	0.0323732	0.199669	0.121593
chr17	77436450	77436549	6804737	0	+	0.666667	(0.58,1]	chr17	686787	89	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.38295	3.6944	5.00585	0.0730701	0.0323732	0.199669	0.121593
chr2	164791555	164791655	1299050	0	-	0.47	(0.45,0.485]	chr2	139300	114	INTRON	INTRON	COBLL1	ENSG00000082438.18	ENST00000652658.2:ENST00000375458.6:ENST00000342193.8:ENST00000409184.8:ENST00000629362.2:ENST00000456171.5:ENST00000491126.6:ENST00000434366.5:ENST00000456693.5:ENST00000448708.5:ENST00000439313.5:ENST00000444537.5:ENST00000414843.5:ENST00000445474.2:ENST00000483743.6:ENST00000496396.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.81608	3.6942899999999996	4.5725	0.0926859	0.0375071	0.188571	0.139823
chr12	95492160	95492259	5296017	0	+	0.494949	(0.485,0.523]	chr12	515391	58	INTRON	INTRON	METAP2	ENSG00000111142.14	ENST00000535095.5:ENST00000546753.5:ENST00000261220.13:ENST00000323666.10:ENST00000553151.5:ENST00000550777.5:ENST00000551840.5:ENST00000549808.1:ENST00000546478.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.7365	3.6942399999999997	4.65198	0.0783889	0.0423471	0.175203	0.149195
chr2	55007886	55007986	1148103	0	-	0.37	(0.36,0.39]	chr2	125459	198	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000394609.6:ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.33887	3.69418	5.04949	0.0563927	0.0459241	0.154743	0.154188
chr16	16274575	16274659	6408431	0	+	0.547619	(0.523,0.58]	chr16	633351	1	SS3_PROX	SS3_PROX:INTRON	NOMO3	ENSG00000103226.19	ENST00000676846.1:ENST00000399336.9:ENST00000677912.1:ENST00000677777.1:ENST00000678192.1:ENST00000678393.1:ENST00000678538.1:ENST00000679086.1:ENST00000574894.2:ENST00000678080.1:ENST00000677260.1:ENST00000676550.1:ENST00000263012.10:ENST00000575225.5:ENST00000677781.1:ENST00000677163.1:ENST00000678148.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	54	2	2.70025	3.69405	4.68785	0.0763549	0.0194172	0.174544	0.0994526
chr16	78634946	78635046	6500763	0	+	0.49	(0.485,0.523]	chr16	645695	602	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000684632.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6:ENST00000408984.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	59	2	2.66833	3.693985	4.71964	0.0718646	0.0211923	0.168159	0.104042
chr2	108561426	108561526	871220	0	+	0.4	(0.39,0.419]	chr2	98283	265	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1	protein_coding	protein_coding	protein_coding	protein_coding	2	123	2	3.15657	3.6938050000000002	4.23104	0.0438962	0.0016534	0.139792	0.0202545
chr11	64147650	64147750	5049054	0	-	0.47	(0.45,0.485]	chr11	490257	209	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	43	2	2.49029	3.69357	4.89685	0.0676934	0.0614781	0.193219	0.158506
chr20	6013476	6013575	7425751	0	+	0.474747	(0.45,0.485]	chr20	773604	32	INTRON	INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000609154.1:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	43	2	2.49029	3.69357	4.89685	0.0676934	0.0614781	0.193219	0.158506
chr20	21321098	21321197	7449162	0	+	0.484848	(0.45,0.485]	chr20	775020	173	INTRON	INTRON	XRN2	ENSG00000088930.8	ENST00000377191.5	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.49029	3.69357	4.89685	0.0676934	0.0614781	0.193219	0.158506
chr5	79398729	79398828	2709378	0	-	0.454545	(0.45,0.485]	chr5	266906	7	INTRON	INTRON	HOMER1	ENSG00000152413.15	ENST00000334082.11:ENST00000282260.10:ENST00000508576.5:ENST00000535690.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.49029	3.69357	4.89685	0.0676934	0.0614781	0.193219	0.158506
chr2	69923563	69923663	826776	0	+	0.45	(0.419,0.45]	chr2	93204	14	INTRON	INTRON	MXD1	ENSG00000059728.11	ENST00000435990.5:ENST00000540449.5:ENST00000264444.7:ENST00000409442.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.7644	3.693565	4.62273	0.103601	0.0447981	0.197541	0.154539
chr22	29008590	29008690	7706531	0	+	0.44	(0.419,0.45]	chr22	806333	153	INTRON	INTRON	ZNRF3:ZNRF3-IT1	ENSG00000183579.16:ENSG00000235786.1	ENST00000544604.7:ENST00000402174.5:ENST00000406323.3:ENST00000412798.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	45	2	2.7644	3.693565	4.62273	0.103601	0.0447981	0.197541	0.154539
chr22	24592510	24592598	7772465	0	-	0.590909	(0.58,1]	chr22	815235	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LRRC75B	ENSG00000178026.13	ENST00000446942.5:ENST00000318753.13:ENST00000491910.5:ENST00000404045.6:ENST00000460524.5:ENST00000465334.1:ENST00000464490.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	2.9908	3.6935000000000002	4.3962	0.0409591	0.0250928	0.136191	0.114418
chr6	158566725	158566825	3063962	0	+	0.52	(0.485,0.523]	chr6	297687	61	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	4	196	2	2.79102	3.693485	4.59595	0.00974572	0.00299988	0.0664239	0.0348875
chr2	87475650	87475749	847398	0	+	0.525253	(0.523,0.58]	chr2	95712	24	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000414030.6	lncRNA	lncRNA	lncRNA	lncRNA	2	57	2	2.48104	3.69302	4.905	0.0563605	0.0313926	0.154188	0.127822
chr20	515524	515624	7512795	0	-	0.44	(0.419,0.45]	chr20	784124	48	INTRON	INTRON	CSNK2A1	ENSG00000101266.19	ENST00000646561.1:ENST00000217244.9:ENST00000643660.1:ENST00000645623.1:ENST00000400227.8:ENST00000349736.10:ENST00000644170.1:ENST00000643700.1:ENST00000645910.1:ENST00000645840.1:ENST00000646305.1:ENST00000645260.1:ENST00000642689.1:ENST00000645234.1:ENST00000646814.1:ENST00000646477.1:ENST00000644885.1:ENST00000644710.1:ENST00000647155.1:ENST00000644003.1:ENST00000645249.1:ENST00000647026.1:ENST00000400217.7:ENST00000647348.1:ENST00000643600.1:ENST00000643680.1:ENST00000460062.7:ENST00000643968.1:ENST00000644177.1:ENST00000609525.2:ENST00000645091.1:ENST00000609606.6:ENST00000608066.6:ENST00000646908.1:ENST00000645187.1:ENST00000642160.1:ENST00000608490.2:ENST00000643910.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	126	2	3.16321	3.6928400000000003	4.22247	0.0455634	0.0018006	0.142336	0.0214959
chr11	65444541	65444641	4871787	0	+	0.67	(0.58,1]	chr11	468177	219	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	154	6415	2	3.68521	3.69246	3.69971	7.12074e-4	3.96041e-5	0.0157597	0.00138542
chr1	948703	948803	379847	0	-	0.63	(0.58,1]	chr1	42699	1	SS3_PROX	SS3_PROX:INTRON	NOC2L	ENSG00000188976.11	ENST00000327044.7:ENST00000477976.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.55596	3.691745	4.82753	0.0534085	0.0427798	0.167062	0.13762
chr17	80223537	80223637	6806854	0	+	0.59	(0.58,1]	chr17	687274	2	SS5_PROX	SS5_PROX:INTRON	SLC26A11	ENSG00000181045.15	ENST00000361193.8:ENST00000546047.6:ENST00000411502.7:ENST00000571888.5:ENST00000576126.5:ENST00000572725.5:ENST00000571564.5:ENST00000571176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	39	2	2.55596	3.691745	4.82753	0.0534085	0.0427798	0.167062	0.13762
chr2	239276081	239276181	1391469	0	-	0.63	(0.58,1]	chr2	148740	245	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	39	2	2.55596	3.691745	4.82753	0.0534085	0.0427798	0.167062	0.13762
chr3	13206924	13207024	1691211	0	-	0.66	(0.58,1]	chr3	176566	424	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.55596	3.691745	4.82753	0.0534085	0.0427798	0.167062	0.13762
chr6	157016594	157016694	3051858	0	+	0.59	(0.58,1]	chr6	297029	311	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	39	2	2.55596	3.691745	4.82753	0.0534085	0.0427798	0.167062	0.13762
chr8	141414823	141414919	3925985	0	+	0.677083	(0.58,1]	chr8	374792	9	INTRON	INTRON	PTP4A3	ENSG00000184489.13	ENST00000520105.5:ENST00000521578.6:ENST00000523147.5:ENST00000329397.6	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.55596	3.691745	4.82753	0.0534085	0.0427798	0.167062	0.13762
chr1	17673985	17674085	54951	0	+	0.59	(0.58,1]	chr1	5603	90	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	99	2	3.59052	3.6914350000000002	3.79235	0.014012	0.00302484	0.0807513	0.0305643
chr20	62956264	62956364	7508258	0	+	0.66	(0.58,1]	chr20	783171	1	SS3_PROX	SS3_PROX:INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5:ENST00000411611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	99	2	3.59052	3.6914350000000002	3.79235	0.014012	0.00302484	0.0807513	0.0305643
chr11	70659627	70659727	5060871	0	-	0.58	(0.523,0.58]	chr11	492673	4	SS5_PROX	SS5_PROX:INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	53	2	2.6197	3.6913	4.7629	0.0853454	0.0167014	0.181766	0.0917029
chr6	167964662	167964754	3074759	0	+	0.402174	(0.39,0.419]	chr6	298971	5	EXON_MRNA	EXON_MRNA:INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000392112.5:ENST00000400822.7:ENST00000447894.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7:ENST00000507704.5:ENST00000515794.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	164	2	3.64804	3.691085	3.73413	0.0178167	0.00236394	0.0915706	0.0259199
chr13	98239693	98239793	5634627	0	+	0.64	(0.58,1]	chr13	553474	259	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000376581.9:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	2	109	2	3.35051	3.69079	4.03107	0.00953058	0.00585987	0.0650078	0.0506158
chr17	72558622	72558721	6963897	0	-	0.464646	(0.45,0.485]	chr17	710389	242	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	3	165	2	3.23051	3.6907700000000006	4.15103	0.0362376	4.94235e-4	0.127941	0.00865935
chr19	6708994	6709088	7322852	0	-	0.5	(0.485,0.523]	chr19	756501	7	INTRON	INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695654.1:ENST00000695692.1:ENST00000695652.1:ENST00000695655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	151	2	3.58354	3.6906600000000003	3.79778	0.0192242	0.00121976	0.0954446	0.0163074
chr7	6703864	6703962	3542752	0	-	0.489796	(0.485,0.523]	chr7	342318	31	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.62192	3.6906549999999996	4.75939	0.0849566	0.0172254	0.181766	0.0923809
chr15	101354741	101354841	6363086	0	-	0.49	(0.485,0.523]	chr15	627201	66	INTRON	INTRON	PCSK6	ENSG00000140479.18	ENST00000677364.1:ENST00000676598.1:ENST00000558951.5:ENST00000398185.6:ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000679007.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000559605.1:ENST00000560902.5:ENST00000611967.4:ENST00000615296.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	78	2	1.79404	3.690635	5.58723	0.0665927	0.0203514	0.190703	0.0979211
chr2	149630330	149630430	920249	0	+	0.33	(0.29,0.33]	chr2	102788	359	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	2	60	2	2.72257	3.6906250000000003	4.65868	0.0735584	0.0191	0.17026	0.099407
chr6	35885424	35885523	3127775	0	-	0.393939	(0.39,0.419]	chr6	304964	107	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	114	2	1.81607	3.690625	5.56518	0.0485306	0.027797	0.160437	0.112962
chr1	50959371	50959471	479730	0	-	0.46	(0.45,0.485]	chr1	56835	3	SS5_PROX	SS5_PROX:INTRON	FAF1	ENSG00000185104.21	ENST00000396153.7:ENST00000487898.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	116	2	3.17691	3.6904899999999996	4.20407	0.0393744	0.00149224	0.132578	0.0187474
chr14	95413640	95413740	6048913	0	-	0.64	(0.58,1]	chr14	593438	65	UTR3	UTR3:EXON_MRNA	SYNE3	ENSG00000176438.13	ENST00000682763.1:ENST00000557275.5	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.02776	3.68995	5.35214	0.0700362	0.0181452	0.195209	0.0921579
chr13	113538558	113538657	5658667	0	+	0.494949	(0.485,0.523]	chr13	555722	34	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000465556.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.79862	3.6898100000000005	4.581	0.085711	0.0375966	0.181766	0.139924
chr3	30642246	30642346	1433449	0	+	0.49	(0.485,0.523]	chr3	153006	90	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4:ENST00000673250.1:ENST00000672866.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.79862	3.6898100000000005	4.581	0.085711	0.0375966	0.181766	0.139924
chr5	138159599	138159699	2768448	0	-	0.5	(0.485,0.523]	chr5	271502	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRD8	ENSG00000112983.18	ENST00000254900.10:ENST00000402931.5:ENST00000230901.9:ENST00000454473.5:ENST00000418329.5:ENST00000441656.5:ENST00000472478.6:ENST00000411594.6:ENST00000512140.5:ENST00000460746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.79862	3.6898100000000005	4.581	0.085711	0.0375966	0.181766	0.139924
chr19	35000786	35000886	7244864	0	+	0.71	(0.58,1]	chr19	742058	3	SS5_PROX	SS5_PROX:INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	106	2	3.44157	3.6896500000000003	3.93773	0.00760198	0.00708574	0.0561937	0.0558168
chr5	134000396	134000496	2764123	0	-	0.62	(0.58,1]	chr5	270978	70	INTRON	INTRON	VDAC1	ENSG00000213585.11	ENST00000265333.8:ENST00000395044.7:ENST00000395047.6:ENST00000425992.2:ENST00000466080.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.21459	3.68956	5.16453	0.0487458	0.0249802	0.160725	0.10758
chrX	133734715	133734815	8113512	0	-	0.37	(0.36,0.39]	chrX	845516	301	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000684880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	174	2	2.44026	3.6894349999999996	4.93861	0.0685343	2.41059e-4	0.165066	0.00518041
chr11	96166806	96166906	5111804	0	-	0.42	(0.419,0.45]	chr11	496566	729	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	1	67	2	3.08499	3.6892050000000003	4.29342	0.0526662	0.0509743	0.167062	0.148503
chr2	75517712	75517812	1194350	0	-	0.52	(0.485,0.523]	chr2	129852	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	EVA1A	ENSG00000115363.14	ENST00000485891.1:ENST00000490746.5:ENST00000233712.5:ENST00000393913.8:ENST00000410113.5:ENST00000410010.1:ENST00000410071.5:ENST00000432649.5:ENST00000452003.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.53228	3.6891950000000002	4.84611	0.0614918	0.0608067	0.18013	0.158506
chr2	148071368	148071467	913869	0	+	0.313131	(0.29,0.33]	chr2	102540	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	MBD5	ENSG00000204406.14	ENST00000407073.5:ENST00000488372.5:ENST00000496158.5:ENST00000642680.2:ENST00000473478.5:ENST00000635796.1:ENST00000637997.1:ENST00000470063.5:ENST00000638043.2:ENST00000638090.1:ENST00000637445.1:ENST00000636620.1:ENST00000478804.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.71956	3.68912	4.65868	0.0735584	0.0442313	0.17026	0.153511
chr18	7676479	7676579	7006022	0	+	0.38	(0.36,0.39]	chr18	716101	1082	INTRON	INTRON	PTPRM	ENSG00000173482.17	ENST00000332175.12:ENST00000580170.6	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.67862	3.6889700000000003	4.69932	0.0877431	0.0511249	0.183437	0.1648
chr19	29990711	29990811	7238191	0	+	0.39	(0.36,0.39]	chr19	740961	39	INTRON	INTRON	URI1	ENSG00000105176.18	ENST00000360605.8:ENST00000574233.5:ENST00000392271.6:ENST00000574110.5:ENST00000574666.5:ENST00000576442.1:ENST00000570704.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.67862	3.6889700000000003	4.69932	0.0877431	0.0511249	0.183437	0.1648
chr8	140957825	140957924	4092707	0	-	0.363636	(0.36,0.39]	chr8	388926	31	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000523803.5:ENST00000521907.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.67862	3.6889700000000003	4.69932	0.0877431	0.0511249	0.183437	0.1648
chr4	77065270	77065366	2254878	0	-	0.302083	(0.29,0.33]	chr4	227734	3	INTRON	INTRON	CCNI	ENSG00000118816.11	ENST00000237654.9:ENST00000511943.5:ENST00000505609.5:ENST00000513774.1:ENST00000507788.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.58669	3.68884	4.79099	0.061706	0.0563947	0.171933	0.158854
chr10	96135689	96135789	4560144	0	+	0.37	(0.36,0.39]	chr10	435111	4	SS5_PROX	SS5_PROX:INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.5517	3.6887099999999995	4.82572	0.0751666	0.0637554	0.184651	0.172839
chr6	158036562	158036661	3059863	0	+	0.515152	(0.485,0.523]	chr6	297390	25	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	68	2	2.02572	3.688695	5.35167	0.0532895	0.0294163	0.167062	0.116079
chr11	65085384	65085477	4869631	0	+	0.397849	(0.39,0.419]	chr11	467665	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ZFPL1	ENSG00000162300.13	ENST00000650243.1:ENST00000294258.8:ENST00000531761.5:ENST00000453524.6:ENST00000526289.5:ENST00000526334.5:ENST00000526440.1:ENST00000533216.1:ENST00000526945.5:ENST00000532200.1:ENST00000530488.1:ENST00000530744.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	44	2	2.61462	3.6885950000000003	4.76257	0.0822354	0.0572875	0.179396	0.174149
chr15	62411454	62411554	6122937	0	+	0.41	(0.39,0.419]	chr15	602349	204	INTRON	INTRON	TLN2	ENSG00000171914.17	ENST00000561322.1:ENST00000636159.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.61462	3.6885950000000003	4.76257	0.0822354	0.0572875	0.179396	0.174149
chr16	81644857	81644957	6509746	0	+	0.59	(0.58,1]	chr16	645926	228	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	2.35391	3.688525	5.02314	0.0600041	0.00638322	0.158506	0.0501889
chr19	18442662	18442761	7347607	0	-	0.313131	(0.29,0.33]	chr19	761434	1	UTR3	UTR3:EXON_MRNA	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	2.69789	3.688485	4.67908	0.0745282	0.0209202	0.172224	0.102931
chr6	349344	349443	2824328	0	+	0.494949	(0.485,0.523]	chr6	277235	5	UTR3	UTR3:EXON_MRNA:INTRON	DUSP22	ENSG00000112679.15	ENST00000344450.9:ENST00000603795.5:ENST00000419235.7:ENST00000603726.5:ENST00000604971.5:ENST00000604988.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	347	2	3.61948	3.68845	3.75742	0.0064637	4.283e-4	0.0531182	0.00781777
chr3	184317026	184317123	1643894	0	+	0.484536	(0.45,0.485]	chr3	172583	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EIF4G1	ENSG00000114867.22	ENST00000352767.7:ENST00000414031.5:ENST00000392537.6:ENST00000444134.5:ENST00000442406.5:ENST00000450424.5:ENST00000421110.5:ENST00000435046.7:ENST00000382330.7:ENST00000413967.5:ENST00000426123.5:ENST00000346169.7:ENST00000350481.9:ENST00000455679.5:ENST00000440448.5:ENST00000427141.6:ENST00000427845.5:ENST00000342981.8:ENST00000424196.5:ENST00000456033.5:ENST00000411531.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	70	2	2.16768	3.68837	5.20906	0.0412837	0.0399616	0.148252	0.133954
chr2	98660455	98660555	1228128	0	-	0.3	(0.29,0.33]	chr2	132983	18	INTRON	INTRON	MGAT4A	ENSG00000071073.13	ENST00000393487.6:ENST00000264968.7:ENST00000414521.6:ENST00000409391.1:ENST00000492163.5:ENST00000461884.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	54	2	2.77627	3.6880999999999995	4.59993	0.0665945	0.0243639	0.162562	0.113231
chr1	17678181	17678281	54993	0	+	0.58	(0.523,0.58]	chr1	5603	132	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.86937	3.68765	4.50593	0.094303	0.0324455	0.188571	0.130548
chr11	61274098	61274198	5041320	0	-	0.57	(0.523,0.58]	chr11	488768	2	SS5_PROX	SS5_PROX:INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	161	2	3.35964	3.687595	4.01555	0.01354	0.00221587	0.0793234	0.0247044
chr3	133773331	133773427	1572467	0	+	0.510417	(0.485,0.523]	chr3	166768	7	EXON_MRNA	EXON_MRNA:INTRON	TF	ENSG00000091513.16	ENST00000402696.9:ENST00000461695.1:ENST00000467842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	62	2	3.13862	3.68745	4.23628	0.045492200000000003	0.0398026	0.154539	0.133884
chr17	72530121	72530220	6963608	0	-	0.414141	(0.39,0.419]	chr17	710377	32	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	2	64	2	2.7438	3.6870849999999997	4.63037	0.0963077	0.0202704	0.189169	0.102067
chr14	104873855	104873955	5925950	0	+	0.69	(0.58,1]	chr14	579942	49	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.82468	3.686975	4.54927	0.0643046	0.0123866	0.161669	0.0765738
chr3	100387478	100387577	1858382	0	-	0.545455	(0.523,0.58]	chr3	189485	1	INTRON	INTRON	TOMM70	ENSG00000154174.8	ENST00000284320.6	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.84901	3.6869549999999998	4.5249	0.0617545	0.0266135	0.158869	0.118113
chr1	1044846	1044939	1176	0	+	0.526882	(0.523,0.58]	chr1	206	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.46839	3.6866950000000003	4.905	0.0683019	0.0563605	0.193274	0.154188
chr6	3402708	3402808	3087518	0	-	0.56	(0.523,0.58]	chr6	299778	249	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.46839	3.6866950000000003	4.905	0.0683019	0.0563605	0.193274	0.154188
chr2	240624388	240624487	1075187	0	+	0.606061	(0.58,1]	chr2	116654	50	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	3	134	2	3.13672	3.6861949999999997	4.23567	0.0147505	8.49275e-4	0.0828332	0.0126615
chr9	134342927	134343027	4260852	0	+	0.59	(0.58,1]	chr9	406311	159	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	49	2	2.79178	3.6860150000000003	4.58025	0.0565563	0.0172566	0.154343	0.0923809
chr8	127967116	127967216	3919531	0	+	0.57	(0.523,0.58]	chr8	374241	238	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1	lncRNA	lncRNA	lncRNA	lncRNA	2	56	2	2.24954	3.6850199999999997	5.1205	0.0500176	0.0416463	0.161481	0.136301
chr17	72540663	72540762	6963717	0	-	0.626263	(0.58,1]	chr17	710389	62	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	2	52	2	2.48056	3.6850050000000003	4.88945	0.0388928	0.0277636	0.131324	0.12074
chr17	38112351	38112447	6728125	0	+	0.375	(0.36,0.39]	chr17	676130	5	INTRON	INTRON	ENSG00000274615	ENSG00000274615.1	ENST00000611212.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	1	44	2	2.73813	3.684915	4.6317	0.0950937	0.0459393	0.189021	0.154743
chr17	72556028	72556127	6963871	0	-	0.373737	(0.36,0.39]	chr17	710389	216	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	1	44	2	2.73813	3.684915	4.6317	0.0950937	0.0459393	0.189021	0.154743
chr16	81549380	81549480	6508787	0	+	0.57	(0.523,0.58]	chr16	645911	535	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	118	2	3.55341	3.68487	3.8163299999999998	0.012872	0.00716661	0.0772995	0.0541871
chr11	65429263	65429363	4871634	0	+	0.48	(0.45,0.485]	chr11	468177	66	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	85	4365	2	3.26915	3.68469	4.10023	8.17807e-4	4.24369e-4	0.0170128	0.00777807
chr7	47366270	47366370	3587454	0	-	0.48	(0.45,0.485]	chr7	346030	196	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	116	2	3.51602	3.68426	3.8525	0.0229356	0.00372052	0.102982	0.0350519
chr19	4338457	4338551	7312856	0	-	0.617021	(0.58,1]	chr19	754665	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STAP2	ENSG00000178078.12	ENST00000594605.6:ENST00000600324.5:ENST00000599736.5:ENST00000601482.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.7038	3.68398	4.66416	0.0648563	0.0144381	0.162218	0.0833845
chr9	91247266	91247366	4332911	0	-	0.59	(0.58,1]	chr9	413996	259	INTRON	INTRON	AUH	ENSG00000148090.12	ENST00000303617.5:ENST00000375731.9	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.7038	3.68398	4.66416	0.0648563	0.0144381	0.162218	0.0833845
chr11	70537230	70537330	5059645	0	-	0.52	(0.485,0.523]	chr11	492663	339	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	52	2	2.5366	3.68366	4.83072	0.0953348	0.0148956	0.189038	0.0847741
chrX	133857665	133857765	8114744	0	-	0.4	(0.39,0.419]	chrX	845529	227	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	94	2	1.91491	3.683575	5.45224	0.048776	0.032783	0.160725	0.122593
chr2	86153159	86153259	1212828	0	-	0.43	(0.419,0.45]	chr2	130650	2	SS5_PROX	SS5_PROX:INTRON	IMMT	ENSG00000132305.22	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	2.74434	3.683535	4.62273	0.103601	0.0208637	0.197541	0.102883
chr20	47654899	47654998	7490131	0	+	0.434343	(0.419,0.45]	chr20	780768	16	UTR3	UTR3:EXON_MRNA	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	4	203	2	3.52734	3.68346	3.83958	0.0160926	0.00193169	0.0869732	0.0225041
chr13	113029530	113029628	5655924	0	+	0.612245	(0.58,1]	chr13	555157	26	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486806.1:ENST00000473345.5	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.87471	3.6829349999999996	4.49116	0.0495478	0.0207449	0.146562	0.102713
chr16	85397532	85397632	6517046	0	+	0.6	(0.58,1]	chr16	646391	382	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.87471	3.6829349999999996	4.49116	0.0495478	0.0207449	0.146562	0.102713
chr17	76548486	76548584	6977090	0	-	0.581633	(0.58,1]	chr17	712268	22	INTRON	INTRON	CYGB:ENSG00000267546	ENSG00000161544.10:ENSG00000267546.2	ENST00000589145.1:ENST00000589963.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	63	2	2.30423	3.6824649999999997	5.0607	0.029633	0.0260615	0.116811	0.116079
chr16	87920155	87920255	6657567	0	-	0.52	(0.485,0.523]	chr16	666059	149	INTRON	INTRON	CA5A	ENSG00000174990.8	ENST00000649158.1:ENST00000648177.1:ENST00000649794.3:ENST00000648022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.85817	3.6822549999999996	4.50634	0.0939553	0.0334631	0.188571	0.133139
chr7	127908211	127908310	3470805	0	+	0.464646	(0.45,0.485]	chr7	335407	30	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000465900.5:ENST00000486037.1:ENST00000484767.5:ENST00000492840.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	70	2	2.20266	3.6820749999999998	5.16149	0.0427653	0.0384371	0.141711	0.13762
chr1	1053579	1053665	1301	0	+	0.674419	(0.58,1]	chr1	285	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4:ENST00000651234.1:ENST00000652369.1:ENST00000461111.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	104	2	3.48503	3.68185	3.87867	0.00797934	0.006811	0.0596361	0.0524379
chr17	57350422	57350522	6760709	0	+	0.55	(0.523,0.58]	chr17	682104	397	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	56	2	2.34664	3.681705	5.01677	0.0482765	0.0413259	0.148318	0.144601
chr1	155561552	155561652	597732	0	-	0.47	(0.45,0.485]	chr1	70100	396	INTRON	INTRON	ASH1L	ENSG00000116539.14	ENST00000676814.1:ENST00000392403.8:ENST00000368346.7:ENST00000677213.1:ENST00000678117.1:ENST00000679097.1:ENST00000679333.1:ENST00000679133.1:ENST00000548830.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	58	2	2.46542	3.681135	4.89685	0.0614781	0.0337868	0.158506	0.133182
chr22	28886960	28887060	7705310	0	+	0.34	(0.33,0.36]	chr22	806317	25	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	2.1553	3.6810850000000004	5.20687	0.0436602	0.041040600000000003	0.153045	0.136289
chr1	17679679	17679779	55008	0	+	0.64	(0.58,1]	chr1	5603	147	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.47204	3.680745	4.88945	0.0623526	0.0388928	0.181127	0.131324
chr6	158027366	158027465	3059766	0	+	0.646465	(0.58,1]	chr6	297374	1	EXON_MRNA	EXON_MRNA:INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2:ENST00000640569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.47204	3.680745	4.88945	0.0623526	0.0388928	0.181127	0.131324
chr9	124495431	124495530	4402679	0	-	0.636364	(0.58,1]	chr9	419817	19	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.47204	3.680745	4.88945	0.0623526	0.0388928	0.181127	0.131324
chr21	44861732	44861832	7678454	0	-	0.6	(0.58,1]	chr21	802762	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_PROX:INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000397886.3:ENST00000474737.5:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	149	2	2.33825	3.680695	5.02314	0.0282972	0.00638322	0.11452	0.0501889
chr14	30573334	30573434	5769408	0	+	0.42	(0.419,0.45]	chr14	565792	121	INTRON	INTRON	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000438909.6:ENST00000544007.5:ENST00000550944.5:ENST00000552488.1:ENST00000648008.1:ENST00000553504.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	289	2	3.36651	3.68067	3.99483	0.00596382	0.00292937	0.0506876	0.0298918
chr10	114952446	114952546	4592488	0	+	0.34	(0.33,0.36]	chr10	438978	9	INTRON	INTRON	TRUB1	ENSG00000165832.6	ENST00000298746.5:ENST00000485065.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	117	2	3.41508	3.680255	3.94543	0.0274458	0.0031765	0.112665	0.0316024
chr14	32108057	32108157	5776865	0	+	0.4	(0.39,0.419]	chr14	566370	133	INTRON	INTRON	ARHGAP5	ENSG00000100852.14	ENST00000556611.5:ENST00000539826.6:ENST00000396582.6:ENST00000345122.8:ENST00000433497.5:ENST00000554090.1:ENST00000557643.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	60	2	2.41984	3.6802200000000003	4.9406	0.0658437	0.0393507	0.162385	0.143358
chr2	235893544	235893644	1066549	0	+	0.59	(0.58,1]	chr2	115730	97	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6:ENST00000448025.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.40217	3.680155	4.95814	0.100879	0.0074469	0.196131	0.0553519
chr6	167940634	167940734	3074507	0	+	0.54	(0.523,0.58]	chr6	298923	75	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7:ENST00000507679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	75	2	2.33029	3.67978	5.02927	0.0735053	0.0095202	0.17026	0.0650078
chr12	48936601	48936698	5423602	0	-	0.505155	(0.485,0.523]	chr12	531642	10	UTR3	UTR3:EXON_MRNA	ARF3	ENSG00000134287.10	ENST00000256682.9	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.23742	3.67917	5.12092	0.0515447	0.0414411	0.165949	0.136301
chr18	13589540	13589639	7026488	0	+	0.636364	(0.58,1]	chr18	717646	37	INTRON	INTRON	LDLRAD4	ENSG00000168675.19	ENST00000679177.1:ENST00000587905.6:ENST00000679167.1:ENST00000359446.11:ENST00000677055.1:ENST00000399848.7:ENST00000676891.1:ENST00000679091.1:ENST00000677304.1:ENST00000678459.1:ENST00000676672.1:ENST00000586222.2:ENST00000678309.1:ENST00000677744.1:ENST00000593236.1:ENST00000678400.1:ENST00000586207.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	53	2	3.06331	3.6789249999999996	4.29454	0.036259	0.0305531	0.127941	0.126768
chr2	36533776	36533875	759435	0	+	0.40404	(0.39,0.419]	chr2	88048	44	INTRON	INTRON	CRIM1	ENSG00000150938.10	ENST00000280527.7	protein_coding	protein_coding	protein_coding	protein_coding	3	102	2	2.19621	3.678345	5.16048	0.0752523	0.00999413	0.173018	0.0667545
chr11	68470908	68471008	4883582	0	+	0.51	(0.485,0.523]	chr11	470696	97	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	56	2	2.1863	3.67821	5.17012	0.0567965	0.038581	0.172995	0.131324
chr10	118741403	118741503	4772434	0	-	0.48	(0.45,0.485]	chr10	456129	106	INTRON	INTRON	CACUL1	ENSG00000151893.15	ENST00000369151.8:ENST00000493518.5:ENST00000477583.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	76	2	2.28369	3.677945	5.0722	0.0812615	0.00988295	0.178194	0.0664239
chrX	52957150	52957248	8043479	0	-	0.489796	(0.485,0.523]	chrX	839361	10	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:SS5_PROX:INTRON	FAM156A	ENSG00000268350.8	ENST00000613284.1:ENST00000611661.4:ENST00000622732.5:ENST00000622323.5:ENST00000612083.5:ENST00000610625.5:ENST00000618601.5:ENST00000619373.5:ENST00000622447.5:ENST00000619518.5:ENST00000617970.4:ENST00000622197.5:ENST00000612846.5:ENST00000619586.5:ENST00000612915.4:ENST00000615092.4:ENST00000623782.3:ENST00000596733.7:ENST00000616592.1:ENST00000619897.4:ENST00000616235.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	59	2	3.0179	3.67781	4.33772	0.0479403	0.03818	0.144601	0.140822
chr15	56990354	56990454	6111060	0	+	0.34	(0.33,0.36]	chr15	601587	689	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.7141	3.677705	4.64131	0.0867669	0.0468071	0.182221	0.156817
chr19	47230728	47230828	7392389	0	-	0.78	(0.58,1]	chr19	768107	4	SS5_PROX	SS5_PROX:INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	2	97	2	3.46232	3.6774500000000003	3.89258	0.0178328	0.00229214	0.0915706	0.0253494
chr11	73121033	73121133	5073767	0	-	0.32	(0.29,0.33]	chr11	493659	369	INTRON	INTRON	FCHSD2	ENSG00000137478.15	ENST00000409418.9:ENST00000311172.11:ENST00000409314.5:ENST00000458644.6:ENST00000409853.5:ENST00000422375.1	protein_coding	protein_coding	protein_coding	protein_coding	3	155	2	3.31177	3.67745	4.04313	0.0289861	6.3144e-4	0.116079	0.0102754
chr1	61710535	61710635	497026	0	-	0.36	(0.33,0.36]	chr1	59315	7	INTRON	INTRON	TM2D1	ENSG00000162604.12	ENST00000606498.5:ENST00000294613.9:ENST00000371180.6:ENST00000488206.5:ENST00000468586.5:ENST00000371178.5:ENST00000494926.5:ENST00000496465.1:ENST00000371177.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	2.51922	3.6773	4.83538	0.0679743	0.0659899	0.189025	0.164413
chr17	55313628	55313728	6757600	0	+	0.42	(0.419,0.45]	chr17	681718	243	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	259	2	2.78342	3.67729	4.57116	0.00722346	0.0046531	0.0544575	0.0445271
chr20	47349988	47350088	7570830	0	-	0.39	(0.36,0.39]	chr20	791096	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.20456	3.67707	5.14958	0.0589415	0.0493212	0.176157	0.146207
chr20	34566748	34566847	7547095	0	-	0.565657	(0.523,0.58]	chr20	787854	54	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	2	111	2	3.4477	3.676875	3.90605	0.0242383	0.00295607	0.106588	0.0300958
chr10	46805914	46806013	4484742	0	+	0.545455	(0.523,0.58]	chr10	428921	36	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000688259.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	56	2	2.09041	3.6768650000000003	5.26332	0.0674148	0.0337698	0.192827	0.124319
chr12	69498336	69498436	5260923	0	+	0.44	(0.419,0.45]	chr12	513023	63	INTRON	INTRON	FRS2	ENSG00000166225.9	ENST00000547219.5:ENST00000550316.5:ENST00000547414.5:ENST00000548154.5:ENST00000549921.6:ENST00000550389.5:ENST00000550937.5:ENST00000549092.5:ENST00000550169.5	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.26209	3.67671	5.09133	0.0586308	0.0541225	0.167824	0.155565
chr6	166333988	166334087	3301413	0	-	0.474747	(0.45,0.485]	chr6	319660	22	INTRON	INTRON	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000478705.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	185	2	3.25802	3.6765	4.09498	0.00845957	0.0031481	0.0617717	0.0313422
chr15	56179403	56179503	6274847	0	-	0.28	[0,0.29]	chr15	618437	1	SS3_PROX	SS3_PROX:INTRON	RFX7	ENSG00000181827.16	ENST00000674082.1:ENST00000559447.8:ENST00000673997.1:ENST00000673948.1:ENST00000560792.4	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.66408	3.6763149999999998	4.68855	0.0554735	0.0466601	0.156477	0.154188
chr13	29546477	29546576	5677481	0	-	0.434343	(0.419,0.45]	chr13	557653	99	INTRON	INTRON	SLC7A1	ENSG00000139514.13	ENST00000380752.10:ENST00000450494.1	protein_coding	protein_coding	protein_coding	protein_coding	3	77	2	2.41875	3.675825	4.9329	0.0716557	0.026950000000000002	0.168159	0.119337
chrX	9526392	9526492	7843059	0	+	0.47	(0.45,0.485]	chrX	822404	242	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.53391	3.675815	4.81772	0.0985287	0.0167663	0.193064	0.0917029
chr2	91629951	91630051	1217384	0	-	0.59	(0.58,1]	chr2	131098	6	INTRON	INTRON	LSP1P4	ENSG00000143429.11	ENST00000692025.1:ENST00000423774.3:ENST00000609777.6:ENST00000692653.1:ENST00000608501.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	55	2	3.16566	3.67542	4.18518	0.0374658	0.0304114	0.139793	0.11845
chr4	67804518	67804618	2050568	0	+	0.38	(0.36,0.39]	chr4	209734	17	INTRON	INTRON	UBA6-DT	ENSG00000248049.8	ENST00000500538.7:ENST00000667140.1:ENST00000663060.1	lncRNA	lncRNA	lncRNA	lncRNA	2	59	2	2.10753	3.67535	5.24317	0.0700776	0.0433841	0.195259	0.138813
chr22	32803820	32803920	7717647	0	+	0.49	(0.485,0.523]	chr22	807776	13	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	1	64	2	3.22297	3.67507	4.12717	0.0545434	0.0348463	0.167824	0.126697
chr22	42646640	42646726	7821297	0	-	0.662791	(0.58,1]	chr22	820390	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CYB5R3	ENSG00000100243.22	ENST00000693367.1:ENST00000352397.10:ENST00000361740.9:ENST00000692152.1:ENST00000693363.1:ENST00000689795.1:ENST00000686523.1:ENST00000407332.6:ENST00000687198.1:ENST00000689001.1:ENST00000687183.1:ENST00000691295.1:ENST00000407623.8:ENST00000402438.6:ENST00000690835.1:ENST00000689195.1:ENST00000688244.1:ENST00000690993.1:ENST00000689239.1:ENST00000692344.1:ENST00000438270.2:ENST00000686129.1:ENST00000466276.2:ENST00000693716.1:ENST00000688004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	70	2	2.53151	3.675065	4.81862	0.0446412	0.0102696	0.140478	0.0678072
chr16	50618704	50618804	6452115	0	+	0.65	(0.58,1]	chr16	639912	27	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	4	71	2	1.99714	3.67464	5.35214	0.0393327	0.0181452	0.143336	0.0921579
chrX	123638833	123638933	8098454	0	-	0.27	[0,0.29]	chrX	844485	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	THOC2	ENSG00000125676.20	ENST00000245838.13:ENST00000355725.8:ENST00000491737.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.59271	3.6744899999999996	4.75627	0.0532832	0.050276	0.167062	0.148161
chr7	222047	222147	3305875	0	+	0.68	(0.58,1]	chr7	320161	127	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	2	97	2	3.48889	3.67441	3.85993	0.016972	0.00251049	0.0889149	0.026941
chr1	43558825	43558925	107027	0	+	0.59	(0.58,1]	chr1	13192	45	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	131	2	3.33506	3.6739699999999997	4.01288	0.00608214	0.00321851	0.0515813	0.0319521
chr5	1107983	1108083	2608931	0	-	0.55	(0.523,0.58]	chr5	259667	134	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.7389	3.67379	4.60868	0.072318	0.0226775	0.168347	0.108193
chr12	69272776	69272875	5260238	0	+	0.313131	(0.29,0.33]	chr12	512932	34	UTR3	UTR3:EXON_MRNA	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000650046.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	192	2	2.7481	3.67366	4.59922	0.0110565	0.00273371	0.0713751	0.0332188
chr1	44244860	44244959	459621	0	-	0.646465	(0.58,1]	chr1	55307	24	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	2.45703	3.6735499999999996	4.89007	0.0933945	0.00872525	0.188571	0.0612699
chr16	619955	620054	6368593	0	+	0.626263	(0.58,1]	chr16	628044	13	INTRON	INTRON	RAB40C	ENSG00000197562.10	ENST00000535977.5:ENST00000569575.5:ENST00000539661.5:ENST00000566290.5:ENST00000248139.8:ENST00000568586.5:ENST00000538492.5:ENST00000565511.5:ENST00000509637.6:ENST00000563109.1:ENST00000564703.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.45703	3.6735499999999996	4.89007	0.0933945	0.00872525	0.188571	0.0612699
chr2	78183817	78183917	1209288	0	-	0.43	(0.419,0.45]	chr2	130071	2436	INTRON	INTRON	ENSG00000227088	ENSG00000227088.2	ENST00000667782.1	lncRNA	lncRNA	lncRNA	lncRNA	2	60	2	2.30548	3.672955	5.04043	0.0625897	0.04996	0.161395	0.160305
chr10	75730845	75730945	4523472	0	+	0.33	(0.29,0.33]	chr10	432271	829	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	2.68671	3.672695	4.65868	0.0735584	0.0206777	0.17026	0.102713
chr14	95318613	95318712	6048835	0	-	0.616162	(0.58,1]	chr14	593433	110	INTRON	INTRON	CLMN	ENSG00000165959.12	ENST00000298912.9:ENST00000553733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	73	2	2.23143	3.67249	5.11355	0.0271806	0.0229637	0.112113	0.109418
chr14	58291534	58291634	5989593	0	-	0.34	(0.33,0.36]	chr14	587490	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PSMA3-AS1	ENSG00000257621.9	ENST00000554360.5:ENST00000556002.5:ENST00000555275.5:ENST00000554378.5:ENST00000555707.5:ENST00000556400.5:ENST00000557660.5:ENST00000553657.5:ENST00000555037.1:ENST00000551597.6	lncRNA	lncRNA	lncRNA	lncRNA	1	43	2	2.77362	3.6719850000000003	4.57035	0.0945416	0.041944	0.188571	0.149108
chr6	155307192	155307292	3298103	0	-	0.36	(0.33,0.36]	chr6	319174	38	INTRON	INTRON	TFB1M	ENSG00000029639.11	ENST00000367166.5:ENST00000470239.1:ENST00000475849.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.77362	3.6719850000000003	4.57035	0.0945416	0.041944	0.188571	0.149108
chr16	46900790	46900890	6442591	0	+	0.63	(0.58,1]	chr16	639005	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GPT2	ENSG00000166123.14	ENST00000340124.9:ENST00000562132.5:ENST00000440783.2	protein_coding	protein_coding	protein_coding	protein_coding	10	402	2	3.45577	3.671985	3.8882	0.00381706	1.01936e-4	0.0398603	0.00277572
chr17	55313029	55313129	6757594	0	+	0.51	(0.485,0.523]	chr17	681718	237	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	229	2	2.78918	3.671165	4.55315	0.00554587	0.00325979	0.045693	0.0365678
chr4	102888027	102888127	2094421	0	+	0.43	(0.419,0.45]	chr4	213544	7	UTR3	UTR3:EXON_MRNA	CISD2	ENSG00000145354.12	ENST00000273986.10:ENST00000643561.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	126	2	3.00229	3.671095	4.3399	0.0572793	0.00133187	0.154343	0.0173276
chr2	111422509	111422609	1252861	0	-	0.46	(0.45,0.485]	chr2	134896	442	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	2.62955	3.670325	4.7111	0.0781398	0.0530416	0.175203	0.167062
chr17	15470014	15470114	6860135	0	-	0.45	(0.419,0.45]	chr17	695071	25	INTRON	INTRON	TVP23C-CDRT4:CDRT4	ENSG00000259024.6:ENSG00000239704.11	ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	44	2	2.58571	3.670305	4.7549	0.0888907	0.0613171	0.183874	0.18013
chr2	186409932	186410032	1341406	0	-	0.43	(0.419,0.45]	chr2	142335	837	INTRON	INTRON	LINC01473	ENSG00000237877.7	ENST00000667056.1:ENST00000671599.1	lncRNA	lncRNA	lncRNA	lncRNA	1	44	2	2.58571	3.670305	4.7549	0.0888907	0.0613171	0.183874	0.18013
chr20	20563680	20563779	7534851	0	-	0.424242	(0.419,0.45]	chr20	786348	165	INTRON	INTRON	RALGAPA2	ENSG00000188559.16	ENST00000202677.12:ENST00000430436.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.58571	3.670305	4.7549	0.0888907	0.0613171	0.183874	0.18013
chr3	188265452	188265552	1652913	0	+	0.4	(0.39,0.419]	chr3	173754	249	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	1.96828	3.67	5.37172	0.0640398	0.0367885	0.184676	0.129052
chr6	158243594	158243693	3060951	0	+	0.282828	[0,0.29]	chr6	297572	109	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	40	2	2.79702	3.669885	4.54275	0.0681032	0.0360966	0.164448	0.139793
chr11	57499848	57499934	5038771	0	-	0.639535	(0.58,1]	chr11	488207	3	INTRON	INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	156	2	3.10559	3.6693800000000003	4.23317	0.00385004	0.00327864	0.0400681	0.0322062
chr10	47534080	47534180	4680523	0	-	0.49	(0.485,0.523]	chr10	446443	102	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	3	151	2	3.4264	3.6693550000000004	3.91231	0.025039	8.81743e-4	0.10758	0.0129974
chr16	81521987	81522087	6508513	0	+	0.42	(0.419,0.45]	chr16	645911	261	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.64776	3.669045	4.69033	0.0958674	0.0551054	0.189038	0.169163
chr3	71412459	71412559	1829573	0	-	0.43	(0.419,0.45]	chr3	188242	518	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000649145.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	44	2	2.64776	3.669045	4.69033	0.0958674	0.0551054	0.189038	0.169163
chr2	113944451	113944551	881832	0	+	0.47	(0.45,0.485]	chr2	99819	17	INTRON	INTRON	ACTR3	ENSG00000115091.12	ENST00000263238.7:ENST00000535589.3	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.69444	3.66895	4.64346	0.0850039	0.0471378	0.181766	0.156915
chr1	211814570	211814670	655230	0	-	0.42	(0.419,0.45]	chr1	77269	210	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.52086	3.6687849999999997	4.81671	0.08258	0.0683849	0.193274	0.179396
chr22	40136345	40136445	7727080	0	+	0.43	(0.419,0.45]	chr22	809594	101	INTRON	INTRON	TNRC6B	ENSG00000100354.21	ENST00000301923.13:ENST00000441751.5:ENST00000402203.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.52086	3.6687849999999997	4.81671	0.08258	0.0683849	0.193274	0.179396
chr2	3299193	3299293	1081099	0	-	0.68	(0.58,1]	chr2	117633	165	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	130	2	3.36168	3.668735	3.97579	0.00655968	0.00298648	0.0536645	0.0303704
chr2	226767942	226768042	1379555	0	-	0.48	(0.45,0.485]	chr2	147292	313	INTRON	INTRON	IRS1	ENSG00000169047.6	ENST00000305123.6	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.5616	3.6686550000000002	4.77571	0.0719884	0.0598406	0.177269	0.168159
chr6	5476597	5476697	2834540	0	+	0.47	(0.45,0.485]	chr6	277876	449	INTRON	INTRON	FARS2	ENSG00000145982.13	ENST00000324331.10:ENST00000648580.1:ENST00000274680.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.5616	3.6686550000000002	4.77571	0.0719884	0.0598406	0.177269	0.168159
chr5	93588844	93588944	2482664	0	+	0.54	(0.523,0.58]	chr5	247302	4	SS5_PROX	SS5_PROX:INTRON	NR2F1	ENSG00000175745.14	ENST00000327111.8:ENST00000615873.1:ENST00000647447.1	protein_coding	protein_coding	protein_coding	protein_coding	4	177	2	3.36676	3.6686050000000003	3.97045	0.0097704	0.0021166	0.0666676	0.0239744
chr16	57377068	57377166	6466035	0	+	0.510204	(0.485,0.523]	chr16	641366	2	UTR5	UTR5:EXON_MRNA:INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1:ENST00000565912.1	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.55201	3.668135	4.78426	0.0660335	0.0272692	0.162385	0.119337
chr11	102183122	102183222	4930476	0	+	0.4	(0.39,0.419]	chr11	475101	202	INTRON	INTRON	YAP1	ENSG00000137693.14	ENST00000282441.10:ENST00000537274.5:ENST00000345877.6:ENST00000615667.4:ENST00000526343.5:ENST00000531439.5:ENST00000629586.2:ENST00000524575.5:ENST00000526594.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	75	2	2.39524	3.6679199999999996	4.9406	0.0658437	0.0275431	0.162385	0.120112
chr22	31626516	31626614	7788332	0	-	0.602041	(0.58,1]	chr22	817191	1	INTRON	INTRON	PISD	ENSG00000241878.12	ENST00000460723.5:ENST00000439502.7:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5:ENST00000474017.5:ENST00000491342.1:ENST00000422020.5:ENST00000429683.1:ENST00000431201.5:ENST00000486675.5:ENST00000479851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	52	2	2.02776	3.667615	5.30747	0.0700362	0.0196049	0.195209	0.0955413
chr19	2050202	2050300	7308297	0	-	0.693878	(0.58,1]	chr19	753574	32	INTRON	INTRON	MKNK2	ENSG00000099875.16	ENST00000309340.11:ENST00000250896.9:ENST00000586828.5:ENST00000589509.5:ENST00000589534.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.71042	3.667225	4.62403	0.0578275	0.0396128	0.154343	0.143388
chr8	38798678	38798777	3802549	0	+	0.585859	(0.58,1]	chr8	365849	95	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5:ENST00000522544.5:ENST00000524354.5:ENST00000523239.5:ENST00000317827.9:ENST00000276520.12:ENST00000520973.5:ENST00000521528.6:ENST00000521935.5:ENST00000523834.1:ENST00000521154.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	38	2	2.71042	3.667225	4.62403	0.0578275	0.0396128	0.154343	0.143388
chr9	135835268	135835367	4431099	0	-	0.656566	(0.58,1]	chr9	423507	73	INTRON	INTRON	CAMSAP1	ENSG00000130559.19	ENST00000389532.9:ENST00000312405.10:ENST00000409386.3	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.71042	3.667225	4.62403	0.0578275	0.0396128	0.154343	0.143388
chr10	79230570	79230670	4533667	0	+	0.54	(0.523,0.58]	chr10	432457	139	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.68276	3.6671650000000002	4.65157	0.0787008	0.0464998	0.175203	0.156036
chr14	24307857	24307954	5759781	0	+	0.546392	(0.523,0.58]	chr14	565585	15	UTR3	UTR3:EXON_MRNA:INTRON	NOP9:LTB4R2	ENSG00000196943.14:ENSG00000213906.10	ENST00000267425.8:ENST00000650565.1:ENST00000527924.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.68276	3.6671650000000002	4.65157	0.0787008	0.0464998	0.175203	0.156036
chr9	129499745	129499843	4250774	0	+	0.530612	(0.523,0.58]	chr9	404726	9	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	67	2	2.1168	3.6670350000000003	5.21727	0.044099	0.0361597	0.153511	0.127853
chr11	57806205	57806290	4858021	0	+	0.529412	(0.523,0.58]	chr11	465238	3	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1:ENST00000683906.1:ENST00000673661.1:ENST00000682621.1:ENST00000683201.1:ENST00000682974.1:ENST00000684035.1:ENST00000683510.1:ENST00000683769.1:ENST00000530720.2:ENST00000684704.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.61478	3.667	4.71922	0.0721601	0.052707	0.168159	0.167062
chr16	81569375	81569475	6508987	0	+	0.57	(0.523,0.58]	chr16	645911	735	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.61478	3.667	4.71922	0.0721601	0.052707	0.168159	0.167062
chr7	139702945	139703044	3723175	0	-	0.555556	(0.523,0.58]	chr7	357498	709	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.61478	3.667	4.71922	0.0721601	0.052707	0.168159	0.167062
chr13	50209206	50209305	5594688	0	+	0.464646	(0.45,0.485]	chr13	551532	228	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000485007.5:ENST00000475913.5:ENST00000484529.5	lncRNA	lncRNA	lncRNA	lncRNA	2	57	2	2.37986	3.66683	4.9538	0.0569772	0.0401325	0.154343	0.144727
chr5	647916	648016	2378761	0	+	0.7	(0.58,1]	chr5	237644	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CEP72	ENSG00000112877.8	ENST00000264935.6:ENST00000512038.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	128	2	3.55862	3.6665799999999997	3.77454	0.00981158	0.00169503	0.0668871	0.0204875
chr3	13096322	13096422	1690104	0	-	0.39	(0.36,0.39]	chr3	176560	230	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	2.18326	3.6664200000000005	5.14958	0.0493212	0.0424169	0.149195	0.146207
chr11	45881107	45881204	4850364	0	+	0.597938	(0.58,1]	chr11	463885	3	UTR3	UTR3:EXON_MRNA	CRY2	ENSG00000121671.12	ENST00000417225.6:ENST00000616623.4:ENST00000443527.6:ENST00000616080.2	protein_coding	protein_coding	protein_coding	protein_coding	2	96	2	3.23007	3.6662749999999997	4.10248	0.0271644	0.0012583	0.112113	0.0167083
chr22	50710419	50710519	7755289	0	+	0.63	(0.58,1]	chr22	812777	39	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.38295	3.6658850000000003	4.94882	0.0730701	0.0354433	0.199669	0.127188
chr7	47366370	47366470	3587455	0	-	0.53	(0.523,0.58]	chr7	346030	197	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.26219	3.6658799999999996	5.06957	0.0448011	0.0325618	0.140478	0.130925
chr17	43543779	43543879	6909606	0	-	0.34	(0.33,0.36]	chr17	703273	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ETV4	ENSG00000175832.13	ENST00000538265.5:ENST00000319349.10:ENST00000393664.6:ENST00000545954.5:ENST00000545089.5:ENST00000591713.5:ENST00000590236.5:ENST00000585508.5:ENST00000587151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	74	2	2.43698	3.66583	4.89468	0.0629186	0.0243071	0.160778	0.113231
chr1	228143228	228143328	358016	0	+	0.6	(0.58,1]	chr1	40401	10	INTRON	INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.78186	3.665565	4.54927	0.0643046	0.0342923	0.161669	0.13449
chr20	58698083	58698183	7498664	0	+	0.59	(0.58,1]	chr20	782002	31	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	38	2	2.78186	3.665565	4.54927	0.0643046	0.0342923	0.161669	0.13449
chr4	707566	707665	1993703	0	+	0.656566	(0.58,1]	chr4	203088	12	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.78186	3.665565	4.54927	0.0643046	0.0342923	0.161669	0.13449
chr16	75236503	75236599	6644473	0	-	0.5	(0.485,0.523]	chr16	664411	1	SS5_PROX	SS5_PROX:INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000566982.1:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10:ENST00000569340.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	151	2	3.40249	3.6652199999999997	3.92795	0.0260491	8.43163e-4	0.109673	0.0125984
chr11	70868614	70868714	5062972	0	-	0.66	(0.58,1]	chr11	492724	419	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000425049.1:ENST00000645599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.63525	3.665175	4.6951	0.0521567	0.0459151	0.154743	0.148503
chr17	77487652	77487739	6805261	0	+	0.655172	(0.58,1]	chr17	686828	1	SS5_PROX	SS5_PROX:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.63525	3.665175	4.6951	0.0521567	0.0459151	0.154743	0.148503
chr2	61536709	61536790	1158362	0	-	0.604938	(0.58,1]	chr2	126969	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000481214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.63525	3.665175	4.6951	0.0521567	0.0459151	0.154743	0.148503
chr8	6758367	6758465	3747572	0	+	0.591837	(0.58,1]	chr8	360316	11	UTR3	UTR3:EXON_MRNA	AGPAT5	ENSG00000155189.12	ENST00000285518.11:ENST00000523234.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.63525	3.665175	4.6951	0.0521567	0.0459151	0.154743	0.148503
chr9	134352309	134352408	4260946	0	+	0.636364	(0.58,1]	chr9	406311	253	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.63525	3.665175	4.6951	0.0521567	0.0459151	0.154743	0.148503
chr7	44455081	44455181	3584745	0	-	0.44	(0.419,0.45]	chr7	345547	270	INTRON	INTRON	NUDCD3	ENSG00000015676.18	ENST00000355451.8:ENST00000460110.5:ENST00000472246.5:ENST00000464812.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	44	2	2.7072600000000002	3.6649950000000002	4.62273	0.103601	0.0496323	0.197541	0.160725
chr8	11857657	11857757	3936678	0	-	0.66	(0.58,1]	chr8	376337	4	SS5_PROX	SS5_PROX:INTRON	CTSB	ENSG00000164733.22	ENST00000677671.1:ENST00000678092.1:ENST00000679128.1:ENST00000677873.1:ENST00000676691.1:ENST00000678598.1:ENST00000353047.11:ENST00000677650.1:ENST00000526481.7:ENST00000676825.1:ENST00000678242.1:ENST00000677366.1:ENST00000677544.1:ENST00000530640.7:ENST00000677418.1:ENST00000677047.1:ENST00000676502.1:ENST00000531089.6:ENST00000678629.1:ENST00000678145.1:ENST00000678929.1:ENST00000677819.1:ENST00000677415.1:ENST00000678357.1:ENST00000676755.1:ENST00000679051.1:ENST00000453527.7:ENST00000678067.1:ENST00000679140.1:ENST00000677082.1:ENST00000533455.6:ENST00000531551.5:ENST00000534382.6:ENST00000679214.1:ENST00000531502.6:ENST00000534510.6:ENST00000677865.1:ENST00000533572.6:ENST00000345125.8:ENST00000526645.6:ENST00000534149.6:ENST00000505496.7:ENST00000532392.2:ENST00000676843.1:ENST00000524500.6:ENST00000525076.6:ENST00000527215.7:ENST00000528965.2:ENST00000532656.7:ENST00000526195.6:ENST00000678615.1:ENST00000527243.6:ENST00000530296.6:ENST00000534636.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	71	2	2.58616	3.66481	4.74346	0.0406424	0.0121457	0.135868	0.0754623
chr10	75912421	75912521	4525293	0	+	0.46	(0.45,0.485]	chr10	432292	285	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.75654	3.66452	4.5725	0.0926859	0.0419966	0.188571	0.149115
chr19	41326535	41326635	7381064	0	-	0.48	(0.45,0.485]	chr19	765964	235	INTRON	INTRON	TGFB1	ENSG00000105329.11	ENST00000598758.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	42	2	2.75654	3.66452	4.5725	0.0926859	0.0419966	0.188571	0.149115
chr8	127916460	127916558	3919019	0	+	0.479592	(0.45,0.485]	chr8	374220	41	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000521122.2:ENST00000520913.2:ENST00000519481.6:ENST00000651568.1:ENST00000669082.1:ENST00000665166.1:ENST00000656948.1:ENST00000671088.1:ENST00000664924.1:ENST00000670204.1:ENST00000652695.1:ENST00000670602.1:ENST00000651664.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1:ENST00000653406.1:ENST00000658242.1	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	2.75654	3.66452	4.5725	0.0926859	0.0419966	0.188571	0.149115
chr10	79228471	79228571	4533646	0	+	0.59	(0.58,1]	chr10	432457	118	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.74846	3.6643550000000005	4.58025	0.0605281	0.0172566	0.158506	0.0923809
chr22	38202891	38202987	7724320	0	+	0.739583	(0.58,1]	chr22	809112	2	UTR5	UTR5:EXON_MRNA:INTRON	MAFF	ENSG00000185022.12	ENST00000624676.1:ENST00000538999.1:ENST00000538320.5:ENST00000338483.7:ENST00000441709.1:ENST00000417948.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	48	2	2.74846	3.6643550000000005	4.58025	0.0605281	0.0172566	0.158506	0.0923809
chr7	105376750	105376850	3667866	0	-	0.62	(0.58,1]	chr7	353743	698	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	2.74846	3.6643550000000005	4.58025	0.0605281	0.0172566	0.158506	0.0923809
chr13	112553456	112553556	5752454	0	-	0.6	(0.58,1]	chr13	563939	49	INTRON	INTRON	TUBGCP3	ENSG00000126216.15	ENST00000261965.8:ENST00000649778.1:ENST00000375669.7:ENST00000464139.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.50987	3.664245	4.81862	0.0865901	0.0102696	0.182221	0.0678072
chr20	25495571	25495669	7539909	0	-	0.622449	(0.58,1]	chr20	787018	37	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5:ENST00000461642.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.50987	3.664245	4.81862	0.0865901	0.0102696	0.182221	0.0678072
chr20	32224581	32224681	7454942	0	+	0.54	(0.523,0.58]	chr20	776030	68	INTRON	INTRON	POFUT1	ENSG00000101346.14	ENST00000375749.8:ENST00000486717.5:ENST00000465791.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.74768	3.66413	4.58058	0.0860403	0.0411359	0.181766	0.147756
chr3	13207224	13207324	1691214	0	-	0.58	(0.523,0.58]	chr3	176566	427	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.74768	3.66413	4.58058	0.0860403	0.0411359	0.181766	0.147756
chr16	75235886	75235986	6644466	0	-	0.64	(0.58,1]	chr16	664409	11	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000566982.1:ENST00000563038.5:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000542031.6:ENST00000420641.7:ENST00000393420.10:ENST00000569340.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	2.21459	3.6640699999999997	5.11355	0.0487458	0.0271806	0.160725	0.112113
chr5	1056081	1056181	2608381	0	-	0.64	(0.58,1]	chr5	259539	1	SS5_PROX	SS5_PROX:INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10:ENST00000634447.1	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.21459	3.6640699999999997	5.11355	0.0487458	0.0271806	0.160725	0.112113
chr6	167891625	167891721	3073995	0	+	0.375	(0.36,0.39]	chr6	298836	2	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000423229.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	164	2	2.99505	3.66396	4.33287	0.0295278	0.00126236	0.116079	0.0167512
chr1	156265000	156265093	600879	0	-	0.473118	(0.45,0.485]	chr1	70829	11	INTRON	INTRON	SMG5	ENSG00000198952.8	ENST00000361813.5	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.49029	3.66392	4.83755	0.0676934	0.06646	0.193219	0.162385
chr2	88125911	88125999	1215108	0	-	0.579545	(0.523,0.58]	chr2	130928	1	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	FABP1	ENSG00000163586.10	ENST00000295834.8:ENST00000393750.3:ENST00000495375.1:ENST00000472846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	41	2	2.54344	3.66364	4.78384	0.0663135	0.0599121	0.177269	0.162385
chr1	26780756	26780852	69351	0	+	0.53125	(0.523,0.58]	chr1	7747	1	UTR3	UTR3:EXON_MRNA	ARID1A	ENSG00000117713.21	ENST00000430799.7:ENST00000324856.13:ENST00000457599.6:ENST00000636219.1:ENST00000466382.2:ENST00000532781.1:ENST00000637788.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	56	2	2.48104	3.663365	4.84569	0.0610722	0.0313926	0.158506	0.127822
chr10	96519592	96519691	4739798	0	-	0.333333	(0.33,0.36]	chr10	452337	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.83079	3.6632550000000004	4.49572	0.103264	0.0376711	0.197541	0.140049
chr10	79111721	79111821	4532472	0	+	0.45	(0.419,0.45]	chr10	432420	421	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.68635	3.66295	4.63955	0.0876314	0.0293406	0.183437	0.125102
chr10	103692827	103692927	4757024	0	-	0.65	(0.58,1]	chr10	454780	4	SS5_PROX	SS5_PROX:INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.83384	3.6624999999999996	4.49116	0.0529065	0.0207449	0.14912	0.102713
chr11	12814223	12814323	4803044	0	+	0.64	(0.58,1]	chr11	460563	494	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.83384	3.6624999999999996	4.49116	0.0529065	0.0207449	0.14912	0.102713
chr3	197517654	197517754	1991564	0	-	0.6	(0.58,1]	chr3	202753	19	INTRON	INTRON	BDH1	ENSG00000161267.12	ENST00000358186.6:ENST00000392378.6:ENST00000392379.6:ENST00000651856.1:ENST00000441275.5:ENST00000479425.5:ENST00000446746.5:ENST00000477015.5:ENST00000434143.5:ENST00000432819.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	49	2	2.83384	3.6624999999999996	4.49116	0.0529065	0.0207449	0.14912	0.102713
chr8	127949435	127949535	3919354	0	+	0.57	(0.523,0.58]	chr8	374241	61	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1	lncRNA	lncRNA	lncRNA	lncRNA	3	147	2	3.60243	3.662325	3.72222	0.0186731	0.00147148	0.0934313	0.0185589
chr19	46979691	46979791	7275370	0	+	0.52	(0.485,0.523]	chr19	747275	419	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	2.67159	3.661785	4.65198	0.0783889	0.0478226	0.175203	0.1588
chr10	79169923	79170023	4533056	0	+	0.51	(0.485,0.523]	chr10	432438	74	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.60361	3.661625	4.71964	0.0718646	0.0541523	0.168159	0.167824
chr12	6339295	6339394	5362100	0	-	0.494949	(0.485,0.523]	chr12	525042	47	INTRON	INTRON	TNFRSF1A	ENSG00000067182.8	ENST00000534885.5:ENST00000162749.7:ENST00000543995.5:ENST00000540022.5:ENST00000539372.5:ENST00000366159.8:ENST00000543048.5:ENST00000440083.6:ENST00000536194.1:ENST00000535958.1:ENST00000538363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.60361	3.661625	4.71964	0.0718646	0.0541523	0.168159	0.167824
chr12	112427010	112427110	5331555	0	+	0.52	(0.485,0.523]	chr12	520142	75	INTRON	INTRON	PTPN11	ENSG00000179295.19	ENST00000688597.1:ENST00000692624.1:ENST00000685487.1:ENST00000690210.1:ENST00000639857.2:ENST00000392597.5:ENST00000687906.1:ENST00000351677.7:ENST00000635625.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.60361	3.661625	4.71964	0.0718646	0.0541523	0.168159	0.167824
chr16	30315926	30316026	6578106	0	-	0.51	(0.485,0.523]	chr16	657488	96	INTRON	INTRON	SMG1P5	ENSG00000183604.15	ENST00000529428.5:ENST00000411546.4:ENST00000691460.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	41	2	2.60361	3.661625	4.71964	0.0718646	0.0541523	0.168159	0.167824
chr2	179230218	179230317	1328063	0	-	0.50505	(0.485,0.523]	chr2	141710	380	INTRON	INTRON	SESTD1	ENSG00000187231.14	ENST00000428443.8:ENST00000440010.5:ENST00000435047.5:ENST00000452991.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.60361	3.661625	4.71964	0.0718646	0.0541523	0.168159	0.167824
chr20	41558730	41558830	7564225	0	-	0.46	(0.45,0.485]	chr20	790090	70	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	68	2	1.9378	3.6614150000000003	5.38503	0.0646604	0.0308908	0.185606	0.119556
chr4	3366387	3366487	2005100	0	+	0.6	(0.58,1]	chr4	204663	230	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	103	2	2.74846	3.6613800000000003	4.5743	0.0605281	3.00208e-4	0.158506	0.00607383
chr2	240626457	240626555	1075208	0	+	0.612245	(0.58,1]	chr2	116658	5	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2:ENST00000407714.2	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.6577	3.66093	4.66416	0.0695799	0.0144381	0.167028	0.0833845
chr6	144627067	144627167	3023338	0	+	0.61	(0.58,1]	chr6	295440	431	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000367526.8	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.6577	3.66093	4.66416	0.0695799	0.0144381	0.167028	0.0833845
chr14	19097100	19097200	5754311	0	+	0.58	(0.523,0.58]	chr14	564239	33	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000619938.1:ENST00000644980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	203	2	3.51187	3.66092	3.80997	0.0102658	0.00114978	0.0684871	0.0157019
chr7	139701346	139701446	3723159	0	-	0.48	(0.45,0.485]	chr7	357498	693	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	1.89565	3.66076	5.42587	0.069925	0.0290571	0.195209	0.116079
chr10	79219973	79220073	4533561	0	+	0.62	(0.58,1]	chr10	432457	33	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	5	208	2	3.46303	3.660665	3.8583	0.00768025	3.29831e-4	0.0584247	0.00649325
chr15	60494961	60495061	6284456	0	-	0.36	(0.33,0.36]	chr15	619448	68	UTR3	UTR3:EXON_MRNA	RORA	ENSG00000069667.16	ENST00000335670.11	protein_coding	protein_coding	protein_coding	protein_coding	5	285	2	3.63606	3.66061	3.68516	0.00569311	0.00226159	0.0497715	0.0250561
chr21	44863709	44863808	7678475	0	-	0.444444	(0.419,0.45]	chr21	802764	19	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000474737.5:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	71	2	3.23741	3.6603250000000003	4.08324	0.0727147	0.0408938	0.199502	0.136191
chr17	82007937	82008037	6815376	0	+	0.64	(0.58,1]	chr17	688641	37	EXON_MRNA	EXON_MRNA:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5:ENST00000578236.5:ENST00000581608.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	178	2	2.94094	3.659845	4.37875	0.0214386	1.29662e-4	0.100405	0.00331752
chr21	44869005	44869103	7678532	0	-	0.55102	(0.523,0.58]	chr21	802773	30	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	433	2	3.0699	3.6596599999999997	4.24942	0.00819703	0.00126862	0.0591729	0.0217072
chr21	37073390	37073473	7617411	0	+	0.710843	(0.58,1]	chr21	795677	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.55596	3.6593999999999998	4.76284	0.0534085	0.0471737	0.167062	0.143232
chr16	85524479	85524579	6518316	0	+	0.69	(0.58,1]	chr16	646391	1652	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	3.13234	3.65876	4.18518	0.0374658	0.0322188	0.139793	0.121593
chr9	77901561	77901661	4320550	0	-	0.49	(0.485,0.523]	chr9	412901	854	INTRON	INTRON	GNAQ	ENSG00000156052.11	ENST00000286548.9:ENST00000411677.1	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.7365	3.6587500000000004	4.581	0.085711	0.0423471	0.181766	0.149195
chr12	48937089	48937187	5423607	0	-	0.469388	(0.45,0.485]	chr12	531642	15	UTR3	UTR3:EXON_MRNA	ARF3	ENSG00000134287.10	ENST00000256682.9	protein_coding	protein_coding	protein_coding	protein_coding	3	152	2	3.59988	3.6587	3.71752	0.0199597	0.0016671	0.0968284	0.0203328
chr12	125124407	125124506	5349546	0	+	0.515152	(0.485,0.523]	chr12	523174	47	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	AACS	ENSG00000081760.17	ENST00000316519.11:ENST00000441247.6:ENST00000316543.14:ENST00000539251.5:ENST00000538851.5:ENST00000545511.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	41	2	2.53228	3.65827	4.78426	0.0660335	0.0614918	0.18013	0.162385
chr17	57464509	57464609	6761857	0	+	0.51	(0.485,0.523]	chr17	682137	194	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.53228	3.65827	4.78426	0.0660335	0.0614918	0.18013	0.162385
chr17	65556411	65556511	6950826	0	-	0.5	(0.485,0.523]	chr17	709222	64	INTRON	INTRON	AXIN2	ENSG00000168646.14	ENST00000307078.10:ENST00000618960.4:ENST00000375702.5	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.53228	3.65827	4.78426	0.0660335	0.0614918	0.18013	0.162385
chr20	63882318	63882418	7509680	0	+	0.6	(0.58,1]	chr20	783601	2	SS3_PROX	SS3_PROX:INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4	protein_coding	protein_coding	protein_coding	protein_coding	6	85	2	1.64939	3.6581849999999996	5.66698	0.0612415	0.0102927	0.18013	0.0684871
chr10	131958245	131958345	4616610	0	+	0.57	(0.523,0.58]	chr10	441116	24	UTR3	UTR3:EXON_MRNA	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	111	2	3.55989	3.658115	3.75634	0.0200759	0.00434055	0.0972041	0.0390182
chr1	169114568	169114667	269853	0	+	0.363636	(0.36,0.39]	chr1	31727	27	INTRON	INTRON	ATP1B1	ENSG00000143153.14	ENST00000367816.5:ENST00000690184.1:ENST00000688755.1:ENST00000692003.1:ENST00000688406.1:ENST00000689522.1:ENST00000691106.1:ENST00000367815.9:ENST00000686702.1:ENST00000685155.1:ENST00000685792.1:ENST00000691753.1:ENST00000494797.2:ENST00000691802.1:ENST00000687745.1:ENST00000685762.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	2.61656	3.65794	4.69932	0.0877431	0.057025	0.183437	0.173546
chr2	235515331	235515430	1062749	0	+	0.565657	(0.523,0.58]	chr2	115651	201	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	89	2	2.01073	3.65794	5.30515	0.0897137	0.00509102	0.185499	0.0433513
chr6	158055723	158055821	3060056	0	+	0.377551	(0.36,0.39]	chr6	297402	3	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.61656	3.65794	4.69932	0.0877431	0.057025	0.183437	0.173546
chr10	14556505	14556605	4633222	0	-	0.53	(0.523,0.58]	chr10	442808	1	SS3_PROX	SS3_PROX:INTRON	FAM107B	ENSG00000065809.14	ENST00000181796.7:ENST00000622567.4:ENST00000468747.5:ENST00000378467.8:ENST00000487335.5:ENST00000378465.7:ENST00000378458.6:ENST00000378462.5:ENST00000479731.5:ENST00000468492.5:ENST00000452706.6:ENST00000488576.5:ENST00000442012.5:ENST00000482277.5:ENST00000472095.5:ENST00000471815.5:ENST00000464952.5:ENST00000495292.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	55	2	2.29891	3.65784	5.01677	0.0482765	0.0454288	0.154539	0.144601
chr9	124493149	124493249	4402656	0	-	0.68	(0.58,1]	chr9	419815	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	2	96	2	3.48889	3.657715	3.82654	0.016972	0.00275362	0.0889149	0.0285628
chr17	82001644	82001744	6815313	0	+	0.68	(0.58,1]	chr17	688640	44	INTRON	INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	99	2	1.61292	3.657415	5.70191	0.0557688	0.00964351	0.171015	0.0659937
chr11	70786950	70787050	5062151	0	-	0.54	(0.523,0.58]	chr11	492701	691	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	115	2	3.55341	3.65724	3.76107	0.0141879	0.00716661	0.0816012	0.0541871
chr8	122881029	122881129	3910656	0	+	0.48	(0.45,0.485]	chr8	373489	171	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6:ENST00000534247.1	protein_coding	protein_coding	protein_coding	protein_coding	3	161	2	3.09489	3.6571949999999998	4.2195	0.00827989	0.0067544	0.0596839	0.0544727
chr1	156660814	156660914	602553	0	-	0.54	(0.523,0.58]	chr1	71257	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000229953	ENSG00000229953.1	ENST00000448869.1	lncRNA	lncRNA	lncRNA	lncRNA	1	41	2	2.46839	3.6570400000000003	4.84569	0.0683019	0.0610722	0.193274	0.158506
chr6	41586213	41586311	2912913	0	+	0.540816	(0.523,0.58]	chr6	285786	3	INTRON	INTRON	FOXP4	ENSG00000137166.17	ENST00000307972.10:ENST00000373063.7:ENST00000409208.5:ENST00000373057.7	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.46839	3.6570400000000003	4.84569	0.0683019	0.0610722	0.193274	0.158506
chr7	47391003	47391103	3587702	0	-	0.58	(0.523,0.58]	chr7	346036	210	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.46839	3.6570400000000003	4.84569	0.0683019	0.0610722	0.193274	0.158506
chr16	74907430	74907528	6643357	0	-	0.479592	(0.45,0.485]	chr16	664223	30	INTRON	INTRON	WDR59	ENSG00000103091.15	ENST00000262144.11:ENST00000569229.5:ENST00000566924.1:ENST00000570070.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.81608	3.6569700000000003	4.49786	0.101311	0.0375071	0.196131	0.139823
chr13	75404587	75404687	5727230	0	-	0.33	(0.29,0.33]	chr13	561722	274	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.65466	3.65667	4.65868	0.0735584	0.0498776	0.17026	0.161215
chr22	28466970	28467070	7779700	0	-	0.3	(0.29,0.33]	chr22	815741	240	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.65466	3.65667	4.65868	0.0735584	0.0498776	0.17026	0.161215
chr6	79065301	79065400	3184755	0	-	0.40404	(0.39,0.419]	chr6	309201	41	INTRON	INTRON	PHIP	ENSG00000146247.14	ENST00000275034.5	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.61462	3.6563	4.69798	0.088901	0.0572875	0.183874	0.174149
chr17	316133	316232	6821437	0	-	0.575758	(0.523,0.58]	chr17	689582	96	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	154	2	3.21923	3.6558849999999996	4.09254	0.0173863	0.00180302	0.0901374	0.0215053
chr1	230122727	230122827	359974	0	+	0.38	(0.36,0.39]	chr1	40627	308	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.67862	3.6551600000000004	4.6317	0.0950937	0.0511249	0.189021	0.1648
chrX	119575900	119575990	7945695	0	+	0.377778	(0.36,0.39]	chrX	831315	1	INTRON	INTRON	UBE2A	ENSG00000077721.17	ENST00000696539.1:ENST00000696533.1:ENST00000696534.1:ENST00000346330.6:ENST00000625938.2:ENST00000631185.2:ENST00000630695.2:ENST00000371558.7:ENST00000629303.2:ENST00000628549.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	43	2	2.67862	3.6551600000000004	4.6317	0.0950937	0.0511249	0.189021	0.1648
chr14	60898133	60898233	5834957	0	+	0.38	(0.36,0.39]	chr14	570749	179	INTRON	INTRON	MNAT1	ENSG00000020426.11	ENST00000261245.9:ENST00000539616.6:ENST00000554002.5:ENST00000557134.1	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.6108	3.6550599999999998	4.69932	0.0877431	0.0267696	0.183437	0.118624
chr2	200360653	200360752	986499	0	+	0.373737	(0.36,0.39]	chr2	108296	90	INTRON	INTRON	SPATS2L	ENSG00000196141.14	ENST00000439084.5:ENST00000409718.5:ENST00000358677.9:ENST00000409988.7:ENST00000409385.5:ENST00000439395.5:ENST00000444012.5:ENST00000451764.6:ENST00000360760.9:ENST00000423749.5:ENST00000457757.5:ENST00000471601.5:ENST00000428692.5:ENST00000453663.5:ENST00000409140.8:ENST00000459656.5:ENST00000471533.5:ENST00000409397.6:ENST00000619961.4:ENST00000409151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	61	2	2.6108	3.6550599999999998	4.69932	0.0877431	0.0267696	0.183437	0.118624
chr16	20691574	20691674	6416374	0	+	0.38	(0.36,0.39]	chr16	634386	95	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	234	2	1.98431	3.654975	5.32564	0.0870222	7.90648e-5	0.182735	0.00229179
chr13	98269199	98269299	5634923	0	+	0.38	(0.36,0.39]	chr13	553480	240	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.48379	3.6547549999999998	4.82572	0.0751666	0.0714535	0.198579	0.172839
chr19	18469782	18469881	7347889	0	-	0.575758	(0.523,0.58]	chr19	761486	35	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	53	2	2.70025	3.654465	4.60868	0.0763549	0.0226775	0.174544	0.108193
chr8	26589372	26589472	3779847	0	+	0.48	(0.45,0.485]	chr8	364064	50	INTRON	INTRON	DPYSL2	ENSG00000092964.18	ENST00000521913.7:ENST00000311151.9:ENST00000523027.1	protein_coding	protein_coding	protein_coding	protein_coding	2	135	2	3.12941	3.654295	4.17918	0.0199365	0.00726784	0.100864	0.0567247
chr18	3005727	3005827	7106759	0	-	0.53	(0.523,0.58]	chr18	723735	230	INTRON	INTRON	LPIN2	ENSG00000101577.10	ENST00000261596.8:ENST00000677752.1	protein_coding	protein_coding	protein_coding	protein_coding	4	177	2	3.14095	3.65422	4.16749	0.00680947	0.00390973	0.0548177	0.0365257
chr5	59655978	59656078	2670698	0	-	0.45	(0.419,0.45]	chr5	264360	696	INTRON	INTRON	PDE4D	ENSG00000113448.20	ENST00000340635.11:ENST00000507116.5:ENST00000502484.6:ENST00000309641.10:ENST00000405053.7:ENST00000502575.1:ENST00000514231.1:ENST00000512069.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	165	2	3.56008	3.65416	3.74824	0.0250979	0.00193825	0.107672	0.0225083
chr9	104830129	104830227	4361428	0	-	0.367347	(0.36,0.39]	chr9	416348	6	INTRON	INTRON	ABCA1	ENSG00000165029.17	ENST00000374736.8:ENST00000678995.1:ENST00000494467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	57	2	2.73901	3.654135	4.56926	0.0786198	0.031369	0.175203	0.127822
chr9	37222220	37222320	4149316	0	+	0.35	(0.33,0.36]	chr9	394662	353	INTRON	INTRON	ZCCHC7	ENSG00000147905.18	ENST00000336755.10:ENST00000534928.5:ENST00000461038.5:ENST00000488607.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	115	2	3.19205	3.65407	4.11609	0.0389619	0.00205621	0.13152	0.0235218
chr20	36861759	36861859	7557119	0	-	0.58	(0.523,0.58]	chr20	789159	20	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.09041	3.6538399999999998	5.21727	0.0674148	0.0361597	0.192827	0.127853
chr14	19121754	19121854	5754559	0	+	0.3	(0.29,0.33]	chr14	564251	66	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000644980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	41	2	2.71956	3.653625	4.58769	0.0806047	0.0442313	0.177452	0.153511
chr1	112921689	112921789	563148	0	-	0.41	(0.39,0.419]	chr1	64638	3	SS5_PROX	SS5_PROX:INTRON	SLC16A1	ENSG00000155380.13	ENST00000679803.1:ENST00000369626.8:ENST00000443580.6:ENST00000538576.5:ENST00000429288.2:ENST00000458229.6:ENST00000679846.1:ENST00000481750.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	56	2	2.6589	3.653345	4.64779	0.0879325	0.0273358	0.183764	0.119337
chr11	68353687	68353786	4882495	0	+	0.676768	(0.58,1]	chr11	470548	51	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	2.09276	3.653265	5.21377	0.0619333	0.0230012	0.180615	0.102982
chr19	15646163	15646263	7215416	0	+	0.51	(0.485,0.523]	chr19	737144	3	SS5_PROX	SS5_PROX:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1:ENST00000609670.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	2.62192	3.65313	4.68434	0.0849566	0.0200045	0.181766	0.100864
chr1	32681937	32682036	84549	0	+	0.414141	(0.39,0.419]	chr1	9809	15	UTR3	UTR3:EXON_MRNA	RBBP4	ENSG00000162521.19	ENST00000373493.10	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.48186	3.653125	4.82439	0.0762206	0.0717596	0.199212	0.174484
chr10	75709657	75709757	4523260	0	+	0.49	(0.485,0.523]	chr10	432271	617	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	77	2	1.99696	3.652665	5.30837	0.0444208	0.0314138	0.153511	0.12069
chr22	19422523	19422623	7763481	0	-	0.52	(0.485,0.523]	chr22	813787	114	INTRON	INTRON	HIRA:C22orf39	ENSG00000100084.14:ENSG00000242259.9	ENST00000263208.5:ENST00000340170.8:ENST00000509549.5:ENST00000464189.5:ENST00000452818.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	77	2	1.99696	3.652665	5.30837	0.0444208	0.0314138	0.153511	0.12069
chr3	13346298	13346398	1692303	0	-	0.53	(0.523,0.58]	chr3	176684	26	INTRON	INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000695490.1:ENST00000695491.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	66	2	1.91169	3.65248	5.39327	0.0659513	0.0277354	0.189025	0.112851
chr3	10855016	10855116	1408081	0	+	0.52	(0.485,0.523]	chr3	151272	103	INTRON	INTRON	SLC6A11	ENSG00000132164.10	ENST00000254488.7	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.79862	3.6524799999999997	4.50634	0.0939553	0.0375966	0.188571	0.139924
chr16	75014667	75014767	6492065	0	+	0.38	(0.36,0.39]	chr16	645337	119	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	58	2	2.10753	3.65233	5.19713	0.0700776	0.0462258	0.195259	0.143138
chr6	128135362	128135462	3253307	0	-	0.46	(0.45,0.485]	chr6	315160	450	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000531050.5:ENST00000524534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	56	2	2.19184	3.65207	5.1123	0.0575893	0.0458344	0.17499	0.142336
chr16	14530853	14530953	6553154	0	-	0.46	(0.45,0.485]	chr16	652279	4	SS5_PROX	SS5_PROX:INTRON	PARN	ENSG00000140694.17	ENST00000651865.1:ENST00000437198.7:ENST00000651348.1:ENST00000650990.1:ENST00000651760.1:ENST00000652541.1:ENST00000652727.1:ENST00000652066.1:ENST00000651300.1:ENST00000420015.6:ENST00000652051.1:ENST00000341484.11:ENST00000539279.5:ENST00000651049.1:ENST00000650960.1:ENST00000651634.1:ENST00000564113.6:ENST00000564904.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	115	2	2.97186	3.6519000000000004	4.33194	0.0536124	0.0010558	0.150486	0.0147548
chr1	85446667	85446767	519828	0	-	0.52	(0.485,0.523]	chr1	61355	115	INTRON	INTRON	DDAH1	ENSG00000153904.21	ENST00000426972.8:ENST00000284031.13	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.45723	3.65167	4.84611	0.0700289	0.0608067	0.195209	0.158506
chr11	70782953	70783053	5062111	0	-	0.52	(0.485,0.523]	chr11	492701	651	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.45723	3.65167	4.84611	0.0700289	0.0608067	0.195209	0.158506
chr14	91222502	91222599	5899582	0	+	0.515464	(0.485,0.523]	chr14	576435	19	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.45723	3.65167	4.84611	0.0700289	0.0608067	0.195209	0.158506
chr3	136299061	136299159	1574569	0	+	0.489796	(0.485,0.523]	chr3	167002	6	INTRON	INTRON	PCCB	ENSG00000114054.14	ENST00000251654.9:ENST00000490504.5:ENST00000483687.5:ENST00000468777.5:ENST00000462637.5:ENST00000466072.5:ENST00000484181.5:ENST00000482086.5:ENST00000471595.5:ENST00000469217.5:ENST00000478469.5:ENST00000474833.5:ENST00000475214.5:ENST00000473073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.45723	3.65167	4.84611	0.0700289	0.0608067	0.195209	0.158506
chr14	19096403	19096503	5754304	0	+	0.5	(0.485,0.523]	chr14	564239	26	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000619938.1:ENST00000644980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	16	696	2	3.30961	3.6515750000000002	3.99354	0.00179251	6.25212e-4	0.0262815	0.0102063
chr1	206351089	206351189	325138	0	+	0.46	(0.45,0.485]	chr1	36570	77	INTRON	INTRON	SRGAP2	ENSG00000266028.8	ENST00000573034.8:ENST00000419187.6:ENST00000605610.5:ENST00000624873.3:ENST00000605242.5:ENST00000572793.2:ENST00000604133.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	57	2	2.46542	3.651485	4.83755	0.06646	0.0337868	0.162385	0.133182
chr9	4717525	4717623	4269946	0	-	0.479592	(0.45,0.485]	chr9	407900	41	INTRON	INTRON	AK3	ENSG00000147853.17	ENST00000381809.8:ENST00000611749.4:ENST00000359883.6:ENST00000447596.4	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.46542	3.651485	4.83755	0.06646	0.0337868	0.162385	0.133182
chr16	89428457	89428557	6661118	0	-	0.48	(0.45,0.485]	chr16	666747	97	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	56	2	2.24119	3.6512849999999997	5.06138	0.0525018	0.0492008	0.167062	0.146142
chr10	27141493	27141591	4651964	0	-	0.428571	(0.419,0.45]	chr10	444170	48	INTRON	INTRON	YME1L1	ENSG00000136758.20	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000491542.6:ENST00000427324.5:ENST00000396296.7	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.26209	3.6512599999999997	5.04043	0.0625897	0.0541225	0.167824	0.160305
chr9	133854988	133855087	4428948	0	-	0.525253	(0.523,0.58]	chr9	423304	203	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	2	112	2	3.64376	3.6511	3.65844	0.0173955	0.00554418	0.0901374	0.0456911
chr21	44871663	44871762	7678559	0	-	0.515152	(0.485,0.523]	chr21	802773	57	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	564	2	3.45324	3.650745	3.84825	0.00312715	0.00194854	0.0311915	0.0276254
chr16	81628887	81628987	6509586	0	+	0.52	(0.485,0.523]	chr16	645926	68	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.77877	3.6500950000000003	4.52142	0.0682166	0.0273555	0.164526	0.119337
chr3	105737758	105737855	1861653	0	-	0.391753	(0.39,0.419]	chr3	189806	1	INTRON	INTRON	CBLB	ENSG00000114423.23	ENST00000645759.1:ENST00000394030.8:ENST00000646499.1:ENST00000645425.1:ENST00000646825.1:ENST00000643322.1:ENST00000403724.5:ENST00000405772.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	57	2	2.73134	3.6500250000000003	4.56871	0.0798958	0.0315133	0.177037	0.127889
chr2	158680772	158680868	937232	0	+	0.364583	(0.36,0.39]	chr2	103525	2	UTR3	UTR3:EXON_MRNA	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000480171.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	165	2	3.18692	3.6498749999999998	4.11283	0.00928594	0.00741394	0.064785	0.0553519
chr10	75440092	75440192	4520558	0	+	0.59	(0.58,1]	chr10	432247	12	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.47204	3.649785	4.82753	0.0623526	0.0427798	0.181127	0.13762
chr19	16370448	16370548	7343634	0	-	0.66	(0.58,1]	chr19	760668	81	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.47204	3.649785	4.82753	0.0623526	0.0427798	0.181127	0.13762
chr11	46068940	46069040	5030301	0	-	0.37	(0.36,0.39]	chr11	486548	181	INTRON	INTRON	PHF21A	ENSG00000135365.17	ENST00000676320.1:ENST00000323180.10:ENST00000530587.6:ENST00000693049.1:ENST00000690620.1:ENST00000418153.6:ENST00000525676.6:ENST00000689695.1:ENST00000685188.1:ENST00000532883.5:ENST00000524497.5:ENST00000531959.5:ENST00000687985.1:ENST00000693122.1:ENST00000529734.5:ENST00000529782.5:ENST00000688222.1:ENST00000691784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	2.73813	3.649445	4.56076	0.103289	0.0459393	0.197541	0.154743
chr17	19666044	19666144	6696199	0	+	0.53	(0.523,0.58]	chr17	672344	6	INTRON	INTRON	ALDH3A2	ENSG00000072210.19	ENST00000581518.6:ENST00000673136.1:ENST00000672465.1:ENST00000631291.2:ENST00000672357.1:ENST00000579855.5:ENST00000176643.11:ENST00000339618.8:ENST00000672564.1:ENST00000671878.1:ENST00000582991.6:ENST00000395575.7:ENST00000672487.1:ENST00000630662.2:ENST00000472059.6:ENST00000672567.1:ENST00000672709.1:ENST00000672059.1:ENST00000673472.1:ENST00000672608.1:ENST00000476965.5:ENST00000574078.3:ENST00000673064.1:ENST00000673516.1:ENST00000672591.1:ENST00000571163.2:ENST00000573947.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	55	2	2.39285	3.648925	4.905	0.0563605	0.0376513	0.154188	0.140049
chr3	32834127	32834227	1439033	0	+	0.4	(0.39,0.419]	chr3	153401	148	INTRON	INTRON	TRIM71	ENSG00000206557.6	ENST00000383763.6	protein_coding	protein_coding	protein_coding	protein_coding	3	162	2	3.32071	3.6488199999999997	3.97693	0.0118852	0.00538545	0.0741726	0.045079
chr10	131917489	131917589	4616191	0	+	0.55	(0.523,0.58]	chr10	441069	45	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	2.53438	3.6486400000000003	4.7629	0.0957531	0.0167014	0.189038	0.0917029
chr21	42846057	42846156	7675432	0	-	0.515152	(0.485,0.523]	chr21	802287	24	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.33451	3.64845	4.96239	0.0518747	0.0426546	0.149802	0.148503
chr3	172071910	172072010	1627786	0	+	0.48	(0.45,0.485]	chr3	170535	246	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	56	2	2.08776	3.64841	5.20906	0.0696113	0.0399616	0.194713	0.133954
chr1	8812994	8813093	395691	0	-	0.353535	(0.33,0.36]	chr1	45089	61	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.58715	3.6480449999999998	4.70894	0.0798152	0.0587055	0.176933	0.176098
chr1	43566398	43566498	107103	0	+	0.51	(0.485,0.523]	chr1	13192	121	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.5366	3.647995	4.75939	0.0953348	0.0172254	0.189038	0.0923809
chr16	22480662	22480753	6422628	0	+	0.417582	(0.39,0.419]	chr16	635319	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SMG1P1:NPIPB5	ENSG00000237296.10:ENSG00000243716.11	ENST00000309865.11:ENST00000431681.5:ENST00000415654.5	protein_coding	processed_transcript	protein_coding:transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	43	2	2.7362	3.647815	4.55943	0.104562	0.0461646	0.19835	0.155334
chr2	162042357	162042456	1294027	0	-	0.414141	(0.39,0.419]	chr2	138943	28	INTRON	INTRON	DPP4	ENSG00000197635.11	ENST00000676810.1:ENST00000360534.8:ENST00000678566.1:ENST00000678668.1:ENST00000676624.1:ENST00000679104.1:ENST00000676479.1:ENST00000676996.1:ENST00000677212.1:ENST00000678740.1:ENST00000678522.1:ENST00000434918.6:ENST00000676768.1:ENST00000490286.5:ENST00000416189.6:ENST00000494507.2:ENST00000461836.6:ENST00000497461.5:ENST00000413651.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	2.7362	3.647815	4.55943	0.104562	0.0461646	0.19835	0.155334
chrY	19595873	19595973	8144197	0	+	0.4	(0.39,0.419]	chrY	848372	29	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	TXLNGY	ENSG00000131002.13	ENST00000445715.6:ENST00000253320.8	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	1	43	2	2.7362	3.647815	4.55943	0.104562	0.0461646	0.19835	0.155334
chr11	121629963	121630063	4955496	0	+	0.31	(0.29,0.33]	chr11	478932	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SORL1	ENSG00000137642.13	ENST00000260197.12:ENST00000530365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	99	2	2.40191	3.64766	4.89341	0.0476724	0.0135896	0.144601	0.0811697
chr17	7111256	7111354	6847746	0	-	0.316327	(0.29,0.33]	chr17	693423	20	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	110	2	3.02123	3.64724	4.27325	0.0461219	0.0011707	0.143055	0.0157899
chr14	95318314	95318414	6048832	0	-	0.53	(0.523,0.58]	chr14	593433	107	INTRON	INTRON	CLMN	ENSG00000165959.12	ENST00000298912.9:ENST00000553733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	2.64274	3.647155	4.65157	0.0787008	0.0221922	0.175203	0.108193
chr2	61537289	61537375	1158369	0	-	0.72093	(0.58,1]	chr2	126970	3	SS5_PROX	SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676789.1:ENST00000678741.1:ENST00000406957.5:ENST00000443240.5:ENST00000481214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	131	2	3.13672	3.64698	4.15724	0.0147505	0.00107173	0.0828332	0.0148869
chr16	78783548	78783648	6502254	0	+	0.47	(0.45,0.485]	chr16	645717	32	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	72	2	2.45567	3.64661	4.83755	0.06646	0.0223895	0.162385	0.108193
chr5	74862233	74862333	2692684	0	-	0.51	(0.485,0.523]	chr5	266007	135	INTRON	INTRON	FAM169A	ENSG00000198780.13	ENST00000389156.9:ENST00000510496.5:ENST00000687041.1:ENST00000510609.5:ENST00000513277.5:ENST00000506954.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	66	2	1.98477	3.64657	5.30837	0.0577158	0.0314138	0.175217	0.12069
chr19	34390995	34391095	7243260	0	+	0.53	(0.523,0.58]	chr19	741718	90	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	127	2	3.18279	3.646235	4.10968	0.0168396	0.0075776	0.0919482	0.0579104
chr3	42215708	42215808	1451708	0	+	0.33	(0.29,0.33]	chr3	154959	32	INTRON	INTRON	TRAK1	ENSG00000182606.17	ENST00000487159.5:ENST00000672026.1:ENST00000673621.2:ENST00000327628.10:ENST00000396175.5	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.77627	3.6462250000000003	4.51618	0.0665945	0.0285091	0.162562	0.123012
chr2	113724977	113725077	1258930	0	-	0.36	(0.33,0.36]	chr2	135590	2	SS5_PROX	SS5_PROX:INTRON	SLC35F5	ENSG00000115084.15	ENST00000245680.7:ENST00000409106.5:ENST00000459683.5:ENST00000470204.2:ENST00000447673.1:ENST00000485214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	115	2	3.48236	3.6460999999999997	3.80984	0.0246193	0.0044449	0.10715	0.0396254
chr21	42844968	42845067	7675421	0	-	0.646465	(0.58,1]	chr21	802287	13	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.52834	3.64559	4.76284	0.0471737	0.0249502	0.143232	0.114418
chr1	45608637	45608737	115788	0	+	0.51	(0.485,0.523]	chr1	14504	3	SS5_PROX	SS5_PROX:INTRON	NASP	ENSG00000132780.17	ENST00000437901.6:ENST00000537798.5:ENST00000437362.6:ENST00000350030.8:ENST00000527359.5:ENST00000453748.5:ENST00000525515.5:ENST00000528238.5:ENST00000372052.8:ENST00000351223.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	175	2	3.43245	3.6433549999999997	3.85426	0.0119901	0.00180393	0.0743424	0.0215053
chr15	101354443	101354542	6363083	0	-	0.40404	(0.39,0.419]	chr15	627201	63	INTRON	INTRON	PCSK6	ENSG00000140479.18	ENST00000677364.1:ENST00000676598.1:ENST00000558951.5:ENST00000398185.6:ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000679007.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000559605.1:ENST00000560902.5:ENST00000611967.4:ENST00000615296.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	118	2	3.20824	3.64335	4.07846	0.0406523	0.00244164	0.135868	0.0263656
chr1	78134396	78134495	165152	0	+	0.555556	(0.523,0.58]	chr1	18816	81	INTRON	INTRON	GIPC2	ENSG00000137960.6	ENST00000370759.4	protein_coding	protein_coding	protein_coding	protein_coding	1	59	2	3.04682	3.643275	4.23973	0.0459721	0.0444247	0.153511	0.142664
chr20	8454647	8454747	7429814	0	+	0.48	(0.45,0.485]	chr20	773698	826	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	154	2	3.017	3.64321	4.26942	0.0261458	0.00125147	0.110034	0.0166412
chr9	129609278	129609378	4250923	0	+	0.62	(0.58,1]	chr9	404742	1	SS5_PROX	SS5_PROX:INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	2	97	2	3.63877	3.642815	3.64686	0.0127766	0.00447535	0.0769397	0.0398484
chr12	124839793	124839893	5537112	0	-	0.67	(0.58,1]	chr12	546095	217	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000415380.6:ENST00000681117.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000539320.3:ENST00000545493.1:ENST00000541661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	51	2	2.9908	3.64267	4.29454	0.0409591	0.0305531	0.136191	0.126768
chr1	176141630	176141729	623591	0	-	0.353535	(0.33,0.36]	chr1	73618	47	INTRON	INTRON	COP1	ENSG00000143207.21	ENST00000367669.8:ENST00000367667.5:ENST00000367666.5:ENST00000649803.1:ENST00000308769.12:ENST00000498306.5:ENST00000491600.5:ENST00000474194.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.7141	3.6422250000000003	4.57035	0.0945416	0.0468071	0.188571	0.156817
chr2	54570781	54570881	799422	0	+	0.34	(0.33,0.36]	chr2	90800	115	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7:ENST00000333896.5	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.7141	3.6422250000000003	4.57035	0.0945416	0.0468071	0.188571	0.156817
chr11	64148148	64148248	5049059	0	-	0.64	(0.58,1]	chr11	490257	214	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	47	2	2.7038	3.6420250000000003	4.58025	0.0648563	0.0172566	0.162218	0.0923809
chr7	127740496	127740596	3469121	0	+	0.4	(0.39,0.419]	chr7	335380	187	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	2.45964	3.642015	4.82439	0.0762206	0.0363943	0.174484	0.139793
chr2	152369905	152370005	925810	0	+	0.43	(0.419,0.45]	chr2	103058	338	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.46706	3.641885	4.81671	0.08258	0.0367089	0.179396	0.139793
chr8	17547879	17547978	3763514	0	+	0.272727	[0,0.29]	chr8	361508	29	INTRON	INTRON	SLC7A2	ENSG00000003989.18	ENST00000494857.6:ENST00000522656.5:ENST00000470360.5:ENST00000004531.14:ENST00000398090.3:ENST00000640220.1	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.5799	3.6417650000000004	4.70363	0.0797411	0.0169854	0.176933	0.0923809
chr22	42646812	42646898	7821299	0	-	0.616279	(0.58,1]	chr22	820390	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CYB5R3	ENSG00000100243.22	ENST00000693367.1:ENST00000352397.10:ENST00000361740.9:ENST00000692152.1:ENST00000693363.1:ENST00000689795.1:ENST00000686523.1:ENST00000407332.6:ENST00000687198.1:ENST00000687183.1:ENST00000691295.1:ENST00000407623.8:ENST00000402438.6:ENST00000690835.1:ENST00000689195.1:ENST00000688244.1:ENST00000690993.1:ENST00000689239.1:ENST00000692344.1:ENST00000438270.2:ENST00000686129.1:ENST00000466276.2:ENST00000693716.1:ENST00000688004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	2.79178	3.64147	4.49116	0.0565563	0.0207449	0.154343	0.102713
chr11	102184718	102184818	4930492	0	+	0.43	(0.419,0.45]	chr11	475101	218	INTRON	INTRON	YAP1	ENSG00000137693.14	ENST00000282441.10:ENST00000537274.5:ENST00000345877.6:ENST00000615667.4:ENST00000526343.5:ENST00000531439.5:ENST00000629586.2:ENST00000524575.5:ENST00000526594.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	83	2	2.00387	3.641275	5.27868	0.0489452	0.0457732	0.160725	0.142336
chr3	48088472	48088572	1765950	0	-	0.66	(0.58,1]	chr3	182012	3	SS5_PROX	SS5_PROX:INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	3	132	2	3.20815	3.641225	4.0743	0.0128255	0.00136577	0.0770824	0.0176851
chr8	120791877	120791977	4059822	0	-	0.34	(0.33,0.36]	chr8	386607	976	INTRON	INTRON	SNTB1	ENSG00000172164.15	ENST00000395601.7:ENST00000517992.2:ENST00000648490.1:ENST00000519177.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	93	2	2.07551	3.64119	5.20687	0.041040600000000003	0.0339268	0.136289	0.133629
chr11	78505189	78505289	5090780	0	-	0.44	(0.419,0.45]	chr11	495346	116	INTRON	INTRON	NARS2	ENSG00000137513.11	ENST00000695341.1:ENST00000281038.10:ENST00000695343.1:ENST00000695342.1:ENST00000695344.1:ENST00000529771.2:ENST00000695345.1:ENST00000695115.1:ENST00000695348.1:ENST00000695114.1:ENST00000695346.1:ENST00000695347.1:ENST00000695349.1:ENST00000695116.1:ENST00000695352.1:ENST00000695353.1:ENST00000695351.1:ENST00000695350.1:ENST00000695354.1:ENST00000695355.1:ENST00000528850.5:ENST00000695357.1:ENST00000695366.1:ENST00000695356.1:ENST00000695358.1:ENST00000695359.1:ENST00000695360.1:ENST00000695361.1:ENST00000695362.1:ENST00000525345.6:ENST00000529880.1:ENST00000695364.1:ENST00000695365.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	58	2	2.72124	3.64086	4.56048	0.0837482	0.0337332	0.181508	0.133139
chr17	316531	316630	6821441	0	-	0.545455	(0.523,0.58]	chr17	689582	100	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	111	2	3.62324	3.64084	3.65844	0.0180195	0.00554418	0.0921579	0.0456911
chr6	144352293	144352393	3020533	0	+	0.29	[0,0.29]	chr6	295148	76	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1:ENST00000628146.2:ENST00000421035.2	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.66408	3.640785	4.61749	0.061376	0.0466601	0.158506	0.156477
chr3	13199026	13199126	1691132	0	-	0.63	(0.58,1]	chr3	176566	345	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	2	94	2	3.26123	3.63873	4.01623	0.0257049	0.00161478	0.109543	0.0199131
chr4	3363795	3363895	2005074	0	+	0.64	(0.58,1]	chr4	204663	204	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	94	2	3.26123	3.63873	4.01623	0.0257049	0.00161478	0.109543	0.0199131
chr13	50567907	50568007	5598304	0	+	0.4	(0.39,0.419]	chr13	551685	342	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1:ENST00000484869.6	lncRNA	lncRNA	lncRNA	lncRNA	2	58	2	2.33678	3.63869	4.9406	0.0658437	0.0461697	0.162385	0.155334
chr12	114678438	114678532	5510643	0	-	0.43617	(0.419,0.45]	chr12	542613	4	INTRON	INTRON	TBX3	ENSG00000135111.16	ENST00000349155.7:ENST00000257566.7:ENST00000548503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	2.58571	3.63802	4.69033	0.0958674	0.0613171	0.189038	0.18013
chr20	34017983	34018083	7459846	0	+	0.45	(0.419,0.45]	chr20	776573	235	INTRON	INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000413297.5:ENST00000246194.8:ENST00000333552.9	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.58571	3.63802	4.69033	0.0958674	0.0613171	0.189038	0.18013
chr1	226944979	226945079	355642	0	+	0.42	(0.419,0.45]	chr1	40145	40	INTRON	INTRON	COQ8A	ENSG00000163050.18	ENST00000366778.5:ENST00000366777.4:ENST00000478406.5:ENST00000489044.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.52086	3.63788	4.7549	0.0888907	0.0683849	0.193274	0.183874
chr7	138546576	138546676	3502874	0	+	0.44	(0.419,0.45]	chr7	337534	74	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.52086	3.63788	4.7549	0.0888907	0.0683849	0.193274	0.183874
chr9	133930176	133930275	4429704	0	-	0.69697	(0.58,1]	chr9	423324	19	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1:ENST00000472905.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	45	2	2.45703	3.6378250000000003	4.81862	0.0933945	0.0102696	0.188571	0.0678072
chr16	81628787	81628887	6509585	0	+	0.51	(0.485,0.523]	chr16	645926	67	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	2	110	2	3.56212	3.6376600000000003	3.7132	0.0199384	0.00492265	0.0967486	0.0423296
chr20	62960403	62960503	7508301	0	+	0.61	(0.58,1]	chr20	783182	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	96	2	3.59052	3.637575	3.68463	0.014012	0.00404771	0.0807513	0.0371291
chr22	42648315	42648410	7821315	0	-	0.631579	(0.58,1]	chr22	820391	14	INTRON	INTRON	CYB5R3	ENSG00000100243.22	ENST00000693367.1:ENST00000352397.10:ENST00000361740.9:ENST00000692152.1:ENST00000693363.1:ENST00000689795.1:ENST00000686523.1:ENST00000407332.6:ENST00000687183.1:ENST00000691295.1:ENST00000690835.1:ENST00000689195.1:ENST00000688244.1:ENST00000690993.1:ENST00000689239.1:ENST00000692344.1:ENST00000686129.1:ENST00000466276.2:ENST00000693716.1:ENST00000688004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	2.61009	3.637125	4.66416	0.0747426	0.0144381	0.172361	0.0833845
chr9	134334145	134334244	4260764	0	+	0.656566	(0.58,1]	chr9	406311	71	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	2.61009	3.637125	4.66416	0.0747426	0.0144381	0.172361	0.0833845
chr11	70587229	70587329	5060145	0	-	0.49	(0.485,0.523]	chr11	492663	839	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	72	2	2.24831	3.63702	5.02573	0.0826414	0.00985879	0.179476	0.0664239
chr16	89295284	89295383	6659758	0	-	0.616162	(0.58,1]	chr16	666648	31	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	127	2	3.46232	3.6367950000000002	3.81127	0.0178328	7.94461e-4	0.0915706	0.0120803
chr1	204083574	204083674	322155	0	+	0.47	(0.45,0.485]	chr1	36272	50	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1:ENST00000528591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.62955	3.636505	4.64346	0.0850039	0.0530416	0.181766	0.167062
chr16	81546681	81546781	6508760	0	+	0.51	(0.485,0.523]	chr16	645911	508	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	108	2	3.37817	3.636485	3.8948	0.0271129	0.00310434	0.112113	0.0311614
chr5	78811320	78811420	2704940	0	-	0.46	(0.45,0.485]	chr5	266706	280	INTRON	INTRON	ARSB	ENSG00000113273.17	ENST00000264914.10	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.5616	3.63635	4.7111	0.0781398	0.0598406	0.177269	0.175203
chr16	81551879	81551979	6508812	0	+	0.59	(0.58,1]	chr16	645911	560	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.38295	3.6362	4.88945	0.0730701	0.0388928	0.199669	0.131324
chr19	1172427	1172526	7305777	0	-	0.626263	(0.58,1]	chr19	753058	34	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.38295	3.6362	4.88945	0.0730701	0.0388928	0.199669	0.131324
chr9	133799205	133799305	4428383	0	-	0.59	(0.58,1]	chr9	423268	10	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.38295	3.6362	4.88945	0.0730701	0.0388928	0.199669	0.131324
chr9	134360792	134360892	4261031	0	+	0.7	(0.58,1]	chr9	406311	338	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.38295	3.6362	4.88945	0.0730701	0.0388928	0.199669	0.131324
chr9	134362588	134362688	4261049	0	+	0.6	(0.58,1]	chr9	406311	356	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.38295	3.6362	4.88945	0.0730701	0.0388928	0.199669	0.131324
chr13	31141759	31141854	5681995	0	-	0.347368	(0.33,0.36]	chr13	557885	1	INTRON	INTRON	HSPH1	ENSG00000120694.20	ENST00000320027.10:ENST00000445273.6:ENST00000630972.2:ENST00000380405.7:ENST00000602786.5:ENST00000626866.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	57	2	2.37729	3.635985	4.89468	0.0629186	0.0415835	0.160778	0.148959
chr11	96167506	96167606	5111811	0	-	0.52	(0.485,0.523]	chr11	496566	736	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	2	78	2	2.51217	3.6357799999999996	4.75939	0.0558462	0.0172254	0.154188	0.0923809
chr21	44868217	44868316	7678524	0	-	0.59596	(0.58,1]	chr21	802773	22	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	475	2	2.67932	3.6356599999999997	4.592	0.00733034	2.81411e-4	0.0550721	0.00953525
chr3	65419636	65419736	1809646	0	-	0.46	(0.45,0.485]	chr3	187193	178	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5	protein_coding	protein_coding	protein_coding	protein_coding	4	184	2	2.58009	3.635635	4.69118	0.0389655	3.85858e-4	0.13152	0.00727473
chr8	122887825	122887925	3910724	0	+	0.65	(0.58,1]	chr8	373489	239	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6:ENST00000534247.1	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.87471	3.6354550000000003	4.3962	0.0495478	0.0250928	0.146562	0.114418
chr6	16509256	16509355	3101929	0	-	0.434343	(0.419,0.45]	chr6	300855	228	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.64776	3.635245	4.62273	0.103601	0.0551054	0.197541	0.169163
chr6	167011385	167011485	3071522	0	+	0.36	(0.33,0.36]	chr6	298637	4	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	CEP43:ENSG00000272980	ENSG00000213066.13:ENSG00000272980.4	ENST00000622353.4:ENST00000366847.9:ENST00000609590.1:ENST00000349556.4:ENST00000494781.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:processed_transcript	3	157	2	3.20149	3.6350100000000003	4.06853	0.00906814	0.00679249	0.0637796	0.0524192
chr1	1341735	1341805	381194	0	-	0.742857	(0.58,1]	chr1	43165	2	CDS	CDS:EXON_MRNA	DVL1	ENSG00000107404.21	ENST00000378891.9:ENST00000378888.10:ENST00000472445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	50	2	2.37998	3.634715	4.88945	0.0388928	0.0345705	0.135397	0.131324
chr15	89323002	89323077	6346839	0	-	0.613333	(0.58,1]	chr15	625760	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POLG	ENSG00000140521.17	ENST00000631044.2:ENST00000442287.6:ENST00000268124.11:ENST00000530292.3:ENST00000637264.1:ENST00000635986.2:ENST00000672923.2:ENST00000666746.1:ENST00000672071.1:ENST00000637238.1:ENST00000636774.1:ENST00000530715.5:ENST00000670281.1:ENST00000528881.2:ENST00000532584.5:ENST00000526314.2:ENST00000526398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	2.37998	3.634715	4.88945	0.0388928	0.0345705	0.135397	0.131324
chr16	46905449	46905548	6442638	0	+	0.353535	(0.33,0.36]	chr16	639007	43	INTRON	INTRON	GPT2	ENSG00000166123.14	ENST00000340124.9:ENST00000562132.5:ENST00000440783.2	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.77362	3.6346700000000003	4.49572	0.103264	0.041944	0.197541	0.149108
chr17	76561902	76561991	6801103	0	+	0.348315	(0.33,0.36]	chr17	686388	1	INTRON	INTRON	SNHG16	ENSG00000163597.16	ENST00000661348.2:ENST00000670737.2:ENST00000653677.2:ENST00000493536.7:ENST00000667091.1:ENST00000586942.7:ENST00000586846.2:ENST00000692197.1:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2:ENST00000686755.1	lncRNA	lncRNA	lncRNA	lncRNA	1	42	2	2.77362	3.6346700000000003	4.49572	0.103264	0.041944	0.197541	0.149108
chr8	25239477	25239577	3774633	0	+	0.47	(0.45,0.485]	chr8	363466	542	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000410074.5:ENST00000481100.5	protein_coding	protein_coding	protein_coding	protein_coding	2	120	2	3.42543	3.6342049999999997	3.84298	0.0131965	0.0103881	0.0785449	0.0682598
chr2	235504740	235504840	1062643	0	+	0.37	(0.36,0.39]	chr2	115651	95	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	125	2	3.45756	3.634115	3.81067	0.015515	0.0106804	0.0849828	0.0700154
chr15	101360220	101360319	6363141	0	-	0.515152	(0.485,0.523]	chr15	627205	38	INTRON	INTRON	PCSK6	ENSG00000140479.18	ENST00000677364.1:ENST00000676598.1:ENST00000558951.5:ENST00000398185.6:ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000679007.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000559605.1:ENST00000560902.5:ENST00000611967.4:ENST00000615296.4:ENST00000676494.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	52	2	2.66276	3.6339699999999997	4.60518	0.0803133	0.0233371	0.177452	0.110098
chr2	111422709	111422809	1252863	0	-	0.6	(0.58,1]	chr2	134896	444	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1	lncRNA	lncRNA	lncRNA	lncRNA	3	60	2	2.05413	3.63395	5.21377	0.0452423	0.0230012	0.154539	0.102982
chr10	102115933	102116031	4752408	0	-	0.479592	(0.45,0.485]	chr10	454306	11	INTRON	INTRON	LDB1	ENSG00000198728.11	ENST00000673968.1:ENST00000425280.2	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.49029	3.633	4.77571	0.0719884	0.0676934	0.193219	0.168159
chr6	2208157	2208257	3084965	0	-	0.48	(0.45,0.485]	chr6	299526	323	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.49029	3.633	4.77571	0.0719884	0.0676934	0.193219	0.168159
chr14	91220766	91220862	5899564	0	+	0.5625	(0.523,0.58]	chr14	576435	1	INTRON	INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	2.14543	3.632965	5.1205	0.0609283	0.0416463	0.179956	0.136301
chr22	25486926	25487026	7701413	0	+	0.49	(0.485,0.523]	chr22	805972	254	INTRON	INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000686640.1:ENST00000509460.3:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	61	2	3.13862	3.6328949999999995	4.12717	0.0545434	0.0398026	0.167824	0.133884
chr17	81997046	81997146	6815267	0	+	0.63	(0.58,1]	chr17	688639	2	SS5_PROX	SS5_PROX:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	249	2	3.02058	3.632645	4.24471	0.0123729	9.18326e-5	0.0759278	0.0025645
chr17	72916851	72916950	6967457	0	-	0.424242	(0.419,0.45]	chr17	710518	667	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000579491.1:ENST00000584129.1:ENST00000579732.5:ENST00000580557.5:ENST00000583146.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	59	2	2.38853	3.632255	4.87598	0.0768574	0.0427256	0.174882	0.15001
chr17	72559420	72559520	6963905	0	-	0.51	(0.485,0.523]	chr17	710389	250	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	4	75	2	1.8299	3.632215	5.43453	0.0621287	0.0258944	0.181127	0.109555
chr10	100550429	100550529	4569170	0	+	0.44	(0.419,0.45]	chr10	436105	24	UTR3	UTR3:EXON_MRNA	HIF1AN	ENSG00000166135.14	ENST00000299163.7	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.1235	3.632	5.1405	0.0693342	0.0550015	0.194077	0.153337
chr16	20675322	20675420	6416210	0	+	0.55102	(0.523,0.58]	chr16	634382	1	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000614721.1:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	204	2	3.50287	3.63197	3.76107	0.0141879	9.67109e-4	0.0816012	0.0138656
chrX	78122634	78122734	7912479	0	+	0.39	(0.36,0.39]	chrX	828894	4	SS3_PROX	SS3_PROX:INTRON	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000491291.1:ENST00000373316.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	297	2	1.98897	3.63191	5.27485	0.0419239	0.00110561	0.149108	0.0200331
chr1	211795588	211795688	655040	0	-	0.58	(0.523,0.58]	chr1	77269	20	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.68276	3.63167	4.58058	0.0860403	0.0464998	0.181766	0.156036
chr16	81618289	81618388	6509479	0	+	0.525253	(0.523,0.58]	chr16	645921	74	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.68276	3.63167	4.58058	0.0860403	0.0464998	0.181766	0.156036
chr19	2049619	2049717	7308291	0	-	0.561224	(0.523,0.58]	chr19	753574	26	INTRON	INTRON	MKNK2	ENSG00000099875.16	ENST00000309340.11:ENST00000250896.9:ENST00000586828.5:ENST00000589509.5:ENST00000589534.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.68276	3.63167	4.58058	0.0860403	0.0464998	0.181766	0.156036
chr14	89204434	89204534	6026139	0	-	0.26	[0,0.29]	chr14	591423	136	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000555010.1:ENST00000557718.5:ENST00000553353.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	132	2	3.49739	3.63154	3.76569	0.0104848	0.00249366	0.0690475	0.0268101
chr2	239268786	239268886	1391396	0	-	0.57	(0.523,0.58]	chr2	148740	172	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	2.54344	3.63133	4.71922	0.0721601	0.0599121	0.177269	0.168159
chr20	13390165	13390262	7525453	0	-	0.546392	(0.523,0.58]	chr20	785575	9	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TASP1	ENSG00000089123.16	ENST00000480436.5:ENST00000337743.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.54344	3.63133	4.71922	0.0721601	0.0599121	0.177269	0.168159
chr9	133855786	133855885	4428956	0	-	0.555556	(0.523,0.58]	chr9	423304	211	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.54344	3.63133	4.71922	0.0721601	0.0599121	0.177269	0.168159
chr3	71447953	71448053	1829928	0	-	0.44	(0.419,0.45]	chr3	188242	873	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000649145.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	2.17119	3.63126	5.09133	0.0637569	0.0586308	0.184651	0.155565
chr17	72543456	72543556	6963745	0	-	0.55	(0.523,0.58]	chr17	710389	90	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	3	66	2	2.1913299999999998	3.6304499999999997	5.06957	0.0448011	0.0378186	0.140551	0.140478
chr17	55320879	55320976	6757678	0	+	0.453608	(0.45,0.485]	chr17	681735	1	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000575307.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	635	2	3.1811	3.6303799999999997	4.07966	0.00203849	0.00103076	0.0283511	0.014484
chr20	34566649	34566748	7547094	0	-	0.545455	(0.523,0.58]	chr20	787854	53	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	2	107	2	3.19317	3.63025	4.06733	0.0366207	0.00192956	0.128697	0.0224824
chr19	1162711	1162810	7305679	0	-	0.585859	(0.58,1]	chr19	753054	77	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5:ENST00000587655.2	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.71042	3.629845	4.54927	0.0643046	0.0396128	0.161669	0.143388
chr9	114192512	114192612	4226075	0	+	0.62	(0.58,1]	chr9	400764	91	INTRON	INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8:ENST00000451716.5:ENST00000494090.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.71042	3.629845	4.54927	0.0643046	0.0396128	0.161669	0.143388
chr1	35433958	35434051	443900	0	-	0.655914	(0.58,1]	chr1	52871	6	UTR3	UTR3:EXON_MRNA	KIAA0319L	ENSG00000142687.18	ENST00000325722.8	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.63525	3.62964	4.62403	0.0578275	0.0459151	0.154743	0.154343
chr10	132554258	132554357	4617003	0	+	0.626263	(0.58,1]	chr10	441139	157	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000423490.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.63525	3.62964	4.62403	0.0578275	0.0459151	0.154743	0.154343
chr11	846075	846174	4786125	0	+	0.686869	(0.58,1]	chr11	458422	11	INTRON	INTRON	TSPAN4	ENSG00000214063.12	ENST00000397411.6:ENST00000397396.5:ENST00000397397.7:ENST00000397408.5:ENST00000530404.5:ENST00000525334.5:ENST00000397406.5:ENST00000409543.6:ENST00000525201.5:ENST00000397404.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.63525	3.62964	4.62403	0.0578275	0.0459151	0.154743	0.154343
chr19	1166299	1166398	7305715	0	-	0.646465	(0.58,1]	chr19	753054	113	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5:ENST00000587655.2	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.63525	3.62964	4.62403	0.0578275	0.0459151	0.154743	0.154343
chr20	37395861	37395961	7473061	0	+	0.61	(0.58,1]	chr20	778189	3	SS3_PROX	SS3_PROX:INTRON	SRC	ENSG00000197122.13	ENST00000692112.1:ENST00000692423.1:ENST00000373578.7:ENST00000373567.6:ENST00000373558.2:ENST00000358208.9:ENST00000489153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.63525	3.62964	4.62403	0.0578275	0.0459151	0.154743	0.154343
chr2	239344484	239344584	1392155	0	-	0.29	[0,0.29]	chr2	148752	200	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	100	2	3.58457	3.6292099999999996	3.67385	0.0148029	0.00495574	0.0830699	0.0425347
chr1	43598257	43598349	107435	0	+	0.423913	(0.419,0.45]	chr1	13245	3	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5:ENST00000496447.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	58	2	2.21736	3.628895	5.04043	0.0625897	0.058705	0.176098	0.160305
chr3	13096122	13096222	1690102	0	-	0.44	(0.419,0.45]	chr3	176560	228	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.21736	3.628895	5.04043	0.0625897	0.058705	0.176098	0.160305
chr1	17668891	17668990	54900	0	+	0.686869	(0.58,1]	chr1	5603	39	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.09276	3.628645	5.16453	0.0619333	0.0249802	0.180615	0.10758
chr17	17771436	17771536	6689750	0	+	0.59	(0.58,1]	chr17	671344	469	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.09276	3.628645	5.16453	0.0619333	0.0249802	0.180615	0.10758
chr17	42237927	42238027	6903479	0	-	0.31	(0.29,0.33]	chr17	702203	54	INTRON	INTRON	STAT5B	ENSG00000173757.10	ENST00000293328.8:ENST00000468312.1:ENST00000415845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	51	2	2.65705	3.6284899999999998	4.59993	0.0789527	0.0243639	0.175712	0.113231
chr14	32112547	32112647	5776910	0	+	0.49	(0.485,0.523]	chr14	566370	178	INTRON	INTRON	ARHGAP5	ENSG00000100852.14	ENST00000556611.5:ENST00000539826.6:ENST00000396582.6:ENST00000345122.8:ENST00000433497.5:ENST00000554090.1:ENST00000557643.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	2.1863	3.628145	5.06999	0.0567965	0.0445854	0.172995	0.140478
chr2	239263091	239263191	1391339	0	-	0.49	(0.485,0.523]	chr2	148740	115	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	40	2	2.60361	3.627795	4.65198	0.0783889	0.0541523	0.175203	0.167824
chr9	114192711	114192810	4226077	0	+	0.515152	(0.485,0.523]	chr9	400764	93	INTRON	INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8:ENST00000451716.5:ENST00000494090.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.60361	3.627795	4.65198	0.0783889	0.0541523	0.175203	0.167824
chr17	72575166	72575265	6964063	0	-	0.535354	(0.523,0.58]	chr17	710393	4	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1	lncRNA	lncRNA	lncRNA	lncRNA	2	56	2	2.60398	3.627775	4.65157	0.0787008	0.0241539	0.175203	0.112732
chr12	124858381	124858481	5537298	0	-	0.53	(0.523,0.58]	chr12	546095	403	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000415380.6:ENST00000681117.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000539320.3:ENST00000545493.1:ENST00000541661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	58	2	3.01567	3.6277	4.23973	0.0482042	0.0444247	0.153511	0.144601
chr16	85243665	85243765	6515505	0	+	0.58	(0.523,0.58]	chr16	646377	159	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	1	58	2	3.01567	3.6277	4.23973	0.0482042	0.0444247	0.153511	0.144601
chr16	50607993	50608093	6452007	0	+	0.54	(0.523,0.58]	chr16	639903	3	SS3_PROX	SS3_PROX:INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	196	2	3.11212	3.62756	4.143	0.0209632	4.38018e-4	0.0995329	0.00796831
chr16	89427358	89427458	6661107	0	-	0.34	(0.33,0.36]	chr16	666747	86	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	59	2	2.61341	3.62736	4.64131	0.0867669	0.0257767	0.182221	0.116361
chr8	133268418	133268517	4084003	0	-	0.50505	(0.485,0.523]	chr8	388324	9	INTRON	INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000517745.2:ENST00000676005.1:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674536.1:ENST00000675357.1:ENST00000675600.1:ENST00000674902.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	145	2	3.12719	3.62718	4.12717	0.0545434	0.0142709	0.167824	0.0818728
chr5	76426707	76426806	2457364	0	+	0.50505	(0.485,0.523]	chr5	245476	218	INTRON	INTRON	IQGAP2	ENSG00000145703.17	ENST00000274364.11:ENST00000692467.1:ENST00000514350.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	107	2	3.27658	3.627135	3.97769	0.0319818	0.00250115	0.121593	0.0268837
chr19	16457915	16458015	7344545	0	-	0.6	(0.58,1]	chr19	760800	153	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5:ENST00000597937.5:ENST00000593760.5:ENST00000596037.5:ENST00000597559.5:ENST00000602151.1:ENST00000595845.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.50987	3.626665	4.74346	0.0865901	0.0121457	0.182221	0.0754623
chr20	36855386	36855485	7557055	0	-	0.606061	(0.58,1]	chr20	789155	156	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.50987	3.626665	4.74346	0.0865901	0.0121457	0.182221	0.0754623
chr14	89203735	89203835	6026132	0	-	0.53	(0.523,0.58]	chr14	591423	129	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000555010.1:ENST00000557718.5:ENST00000553353.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	143	2	3.54941	3.626505	3.7036	0.0156851	0.00236776	0.0852152	0.0259199
chr11	43709794	43709894	4846398	0	+	0.51	(0.485,0.523]	chr11	463519	281	INTRON	INTRON	ENSG00000283341:HSD17B12	ENSG00000283341.3:ENSG00000149084.13	ENST00000532864.6:ENST00000529261.5:ENST00000527433.6:ENST00000531185.5:ENST00000278353.10:ENST00000636007.1:ENST00000395700.4:ENST00000637401.1:ENST00000636722.1:ENST00000638034.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:nonsense_mediated_decay:lncRNA	1	40	2	2.67159	3.6262950000000003	4.581	0.085711	0.0478226	0.181766	0.1588
chr13	44962658	44962758	5702445	0	-	0.5	(0.485,0.523]	chr13	559415	27	INTRON	INTRON	NUFIP1	ENSG00000083635.8	ENST00000379161.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.67159	3.6262950000000003	4.581	0.085711	0.0478226	0.181766	0.1588
chr16	20907895	20907994	6418038	0	+	0.50505	(0.485,0.523]	chr16	634694	48	INTRON	INTRON	LYRM1	ENSG00000102897.10	ENST00000568663.5:ENST00000412082.6:ENST00000439021.5:ENST00000567165.5:ENST00000569023.5:ENST00000568820.5:ENST00000562740.5:ENST00000219168.8:ENST00000567954.6:ENST00000396052.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.67159	3.6262950000000003	4.581	0.085711	0.0478226	0.181766	0.1588
chr6	2113671	2113771	3084016	0	-	0.51	(0.485,0.523]	chr6	299503	704	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.67159	3.6262950000000003	4.581	0.085711	0.0478226	0.181766	0.1588
chr13	98277598	98277698	5635007	0	+	0.6	(0.58,1]	chr13	553480	324	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	4	159	2	2.78749	3.62622	4.46495	0.00786471	0.00234598	0.0576321	0.0305046
chr17	6909087	6909187	6675762	0	+	0.55	(0.523,0.58]	chr17	669364	70	INTRON	INTRON	ALOX12P2	ENSG00000262943.8	ENST00000574183.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	1	40	2	2.46839	3.6261149999999995	4.78384	0.0683019	0.0663135	0.193274	0.162385
chr19	1163209	1163309	7305684	0	-	0.56	(0.523,0.58]	chr19	753054	82	INTRON	INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5:ENST00000587655.2	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.46839	3.6261149999999995	4.78384	0.0683019	0.0663135	0.193274	0.162385
chr1	12594490	12594590	402548	0	-	0.5	(0.485,0.523]	chr1	46222	135	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.53228	3.62596	4.71964	0.0718646	0.0614918	0.18013	0.168159
chrX	2381162	2381262	7967655	0	-	0.52	(0.485,0.523]	chrX	834355	428	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.53228	3.62596	4.71964	0.0718646	0.0614918	0.18013	0.168159
chr2	112523361	112523460	877886	0	+	0.474747	(0.45,0.485]	chr2	99159	4	INTRON	INTRON	TTL	ENSG00000114999.8	ENST00000233336.7:ENST00000460450.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	115	2	2.84011	3.625705	4.4113	0.0648672	8.48909e-4	0.162218	0.0126615
chr1	2292694	2292793	5139	0	+	0.646465	(0.58,1]	chr1	1052	443	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.55596	3.62553	4.6951	0.0534085	0.0521567	0.167062	0.148503
chr16	81618984	81619083	6509486	0	+	0.606061	(0.58,1]	chr16	645921	81	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.55596	3.62553	4.6951	0.0534085	0.0521567	0.167062	0.148503
chr2	10191601	10191701	718217	0	+	0.69	(0.58,1]	chr2	84002	355	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	37	2	2.55596	3.62553	4.6951	0.0534085	0.0521567	0.167062	0.148503
chr6	3321767	3321866	3086703	0	-	0.59596	(0.58,1]	chr6	299762	232	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000467144.5:ENST00000496753.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.55596	3.62553	4.6951	0.0534085	0.0521567	0.167062	0.148503
chr2	38365272	38365371	1124219	0	-	0.383838	(0.36,0.39]	chr2	123043	58	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000472097.1:ENST00000451483.1:ENST00000416222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.5517	3.6255100000000002	4.69932	0.0877431	0.0637554	0.184651	0.183437
chr20	10427133	10427233	7524951	0	-	0.33	(0.29,0.33]	chr20	785433	60	INTRON	INTRON	MKKS	ENSG00000125863.20:ENSG00000285508.1	ENST00000347364.7:ENST00000651692.1:ENST00000652676.1:ENST00000399054.6:ENST00000609375.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	2.57172	3.6254	4.67908	0.0888658	0.0209202	0.183874	0.102931
chr14	39297790	39297888	5792492	0	+	0.418367	(0.39,0.419]	chr14	567538	24	INTRON	INTRON	MIA2	ENSG00000150527.18	ENST00000553728.1:ENST00000640607.2:ENST00000341749.7:ENST00000557038.5:ENST00000396165.8:ENST00000396158.6:ENST00000280083.7:ENST00000341502.9:ENST00000556148.5:ENST00000348007.7:ENST00000553352.1	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.20247	3.62531	5.04815	0.0592353	0.0572698	0.176157	0.154343
chr11	72756345	72756437	5070498	0	-	0.543478	(0.523,0.58]	chr11	493480	2	INTRON	INTRON	ARAP1:STARD10	ENSG00000186635.15:ENSG00000214530.10	ENST00000359373.9:ENST00000334805.11:ENST00000543304.5:ENST00000537351.5:ENST00000538536.5:ENST00000538437.5:ENST00000543089.1:ENST00000545082.5:ENST00000544767.5:ENST00000537947.5:ENST00000536728.5:ENST00000400925.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	143	2	3.50802	3.625095	3.74217	0.0146653	0.00264792	0.0826843	0.027979
chr1	45552135	45552235	115333	0	+	0.39	(0.36,0.39]	chr1	14403	3	SS3_PROX	SS3_PROX:INTRON	AKR1A1	ENSG00000117448.14	ENST00000372070.7:ENST00000621846.4:ENST00000434299.5:ENST00000351829.9:ENST00000496999.5:ENST00000476957.5:ENST00000481885.5:ENST00000471651.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	118	2	3.53359	3.62488	3.71617	0.024369	0.00589796	0.106628	0.0477093
chr8	119219587	119219687	3904795	0	+	0.45	(0.419,0.45]	chr8	373178	100	INTRON	INTRON	MAL2	ENSG00000147676.14	ENST00000522112.6:ENST00000534619.5:ENST00000614891.5:ENST00000531508.1	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.26209	3.62488	4.98767	0.0669167	0.0541225	0.167824	0.16272
chr16	81646477	81646575	6509764	0	+	0.326531	(0.29,0.33]	chr16	645932	3	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8:ENST00000564666.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	109	2	3.61875	3.624465	3.63018	0.0172028	0.00619392	0.0897102	0.0494553
chr8	22370334	22370434	3770051	0	+	0.54	(0.523,0.58]	chr8	362721	22	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	9	350	2	3.14301	3.6242650000000003	4.10552	0.00331993	0.00145681	0.0368376	0.0184991
chr16	29264816	29264915	6433485	0	+	0.626263	(0.58,1]	chr16	636745	127	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	1	52	2	3.06331	3.624245	4.18518	0.0374658	0.036259	0.139793	0.127941
chr2	28300689	28300789	741836	0	+	0.39	(0.36,0.39]	chr2	86569	18	INTRON	INTRON	BABAM2	ENSG00000158019.21	ENST00000344773.6:ENST00000379624.6:ENST00000342045.6:ENST00000379632.6:ENST00000361704.6	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.61656	3.62413	4.6317	0.0950937	0.057025	0.189021	0.173546
chr22	24042603	24042703	7694762	0	+	0.38	(0.36,0.39]	chr22	805395	3	SS3_PROX	SS3_PROX:INTRON	CABIN1	ENSG00000099991.18	ENST00000454754.5:ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000445422.5:ENST00000398319.6	protein_coding	protein_coding	protein_coding	protein_coding	5	91	2	1.91711	3.624085	5.33106	0.0484888	0.0383628	0.160302	0.131324
chr5	133962611	133962711	2763761	0	-	0.4	(0.39,0.419]	chr5	270919	22	INTRON	INTRON	C5orf15	ENSG00000113583.8	ENST00000231512.5:ENST00000507191.1:ENST00000509913.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.54977	3.623875	4.69798	0.088901	0.0640389	0.184676	0.183874
chr4	151252900	151253000	2351812	0	-	0.48	(0.45,0.485]	chr4	235107	250	INTRON	INTRON	SH3D19	ENSG00000109686.19	ENST00000604030.7:ENST00000604440.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.57593	3.62366	4.67139	0.093234	0.0223378	0.188571	0.108193
chr3	9469466	9469566	1402853	0	+	0.31	(0.29,0.33]	chr3	150230	10	EXON_MRNA	EXON_MRNA:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000406341.5:ENST00000670063.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000466242.5:ENST00000682236.1:ENST00000421188.1:ENST00000687014.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	40	2	2.58669	3.622685	4.65868	0.0735584	0.0563947	0.171933	0.17026
chr10	27141787	27141886	4651967	0	-	0.393939	(0.39,0.419]	chr10	444170	51	INTRON	INTRON	YME1L1	ENSG00000136758.20	ENST00000376016.8:ENST00000613434.4:ENST00000326799.7:ENST00000491542.6:ENST00000427324.5:ENST00000396296.7	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.61462	3.622495	4.63037	0.0963077	0.0572875	0.189169	0.174149
chr16	20905108	20905207	6418010	0	+	0.414141	(0.39,0.419]	chr16	634694	20	INTRON	INTRON	LYRM1	ENSG00000102897.10	ENST00000568663.5:ENST00000412082.6:ENST00000439021.5:ENST00000567165.5:ENST00000569023.5:ENST00000568820.5:ENST00000562740.5:ENST00000219168.8:ENST00000567954.6:ENST00000396052.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.61462	3.622495	4.63037	0.0963077	0.0572875	0.189169	0.174149
chr7	139370288	139370387	3505054	0	+	0.393939	(0.39,0.419]	chr7	337855	96	INTRON	INTRON	LUC7L2:FMC1-LUC7L2	ENSG00000146963.18:ENSG00000269955.2	ENST00000541170.7:ENST00000541515.3:ENST00000608368.5:ENST00000619796.4:ENST00000354926.9:ENST00000435096.1:ENST00000456182.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	42	2	2.61462	3.622495	4.63037	0.0963077	0.0572875	0.189169	0.174149
chr8	96660520	96660619	3870080	0	+	0.393939	(0.39,0.419]	chr8	371341	8	INTRON	INTRON	CPQ	ENSG00000104324.16	ENST00000220763.10:ENST00000519900.1:ENST00000517742.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.48186	3.622215	4.76257	0.0822354	0.0717596	0.199212	0.179396
chr19	939626	939725	7185242	0	+	0.555556	(0.523,0.58]	chr19	730741	65	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	86	2	1.93897	3.6220600000000003	5.30515	0.0994044	0.00509102	0.194647	0.0433513
chr3	65418438	65418538	1809634	0	-	0.41	(0.39,0.419]	chr3	187193	166	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.24864	3.62201	4.99538	0.0613573	0.0544427	0.167824	0.158506
chr10	15263668	15263768	4637354	0	-	0.33	(0.29,0.33]	chr10	443067	84	INTRON	INTRON	FAM171A1	ENSG00000148468.17	ENST00000378116.9:ENST00000455654.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.21906	3.621505	5.02395	0.0539212	0.0445554	0.167824	0.140478
chr11	2668605	2668705	4971997	0	-	0.36	(0.33,0.36]	chr11	481197	604	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	7	252	2	2.86073	3.621445	4.38216	0.00514092	0.0044784	0.0471181	0.0398484
chr6	158002438	158002538	3059514	0	+	0.49	(0.485,0.523]	chr6	297363	200	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.7365	3.6214199999999996	4.50634	0.0939553	0.0423471	0.188571	0.149195
chr22	20123761	20123855	7686880	0	+	0.531915	(0.523,0.58]	chr22	804213	7	INTRON	INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000331821.7:ENST00000411892.5:ENST00000423859.5:ENST00000418705.2:ENST00000448394.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	147	2	3.03043	3.6214049999999998	4.21238	0.0241245	0.0013008	0.106588	0.0171237
chr7	24854330	24854430	3554712	0	-	0.33	(0.29,0.33]	chr7	343456	13	INTRON	INTRON	OSBPL3	ENSG00000070882.13	ENST00000313367.7:ENST00000409863.5:ENST00000396431.5:ENST00000409452.5:ENST00000409759.5:ENST00000409555.5:ENST00000396429.5:ENST00000409069.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.65466	3.621175	4.58769	0.0806047	0.0498776	0.177452	0.161215
chr15	24984320	24984419	6063688	0	+	0.323232	(0.29,0.33]	chr15	595387	20	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	3	145	2	3.25057	3.62107	3.99157	0.00879016	0.00543459	0.0630845	0.0454065
chr17	64039766	64039864	6945351	0	-	0.520408	(0.485,0.523]	chr17	708504	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ERN1	ENSG00000178607.17	ENST00000680433.1:ENST00000433197.4:ENST00000680625.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.45723	3.620745	4.78426	0.0700289	0.0660335	0.195209	0.162385
chrX	1399266	1399366	7830155	0	+	0.52	(0.485,0.523]	chrX	822061	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LINC00106	ENSG00000236871.7	ENST00000430235.7	lncRNA	lncRNA	lncRNA	lncRNA	1	40	2	2.45723	3.620745	4.78426	0.0700289	0.0660335	0.195209	0.162385
chr16	89292498	89292597	6659730	0	-	0.525253	(0.523,0.58]	chr16	666648	3	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	263	2	3.07377	3.6206300000000002	4.16749	0.00680947	0.00177903	0.0548177	0.021261
chr10	79182407	79182507	4533181	0	+	0.6	(0.58,1]	chr10	432438	199	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.0383	3.620265	5.20223	0.0978534	0.00411607	0.191981	0.0374453
chr9	134330352	134330452	4260726	0	+	0.64	(0.58,1]	chr9	406311	33	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	2.74846	3.61981	4.49116	0.0605281	0.0207449	0.158506	0.102713
chr9	134343227	134343326	4260855	0	+	0.606061	(0.58,1]	chr9	406311	162	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	2.74846	3.61981	4.49116	0.0605281	0.0207449	0.158506	0.102713
chr2	11579420	11579518	720667	0	+	0.428571	(0.419,0.45]	chr2	84132	6	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000263834.9:ENST00000389825.7:ENST00000381483.6:ENST00000234142.9	protein_coding	protein_coding	protein_coding	protein_coding	2	120	2	3.05795	3.619525	4.1811	0.0529681	0.00199987	0.149208	0.0230381
chr1	162523248	162523347	257043	0	+	0.323232	(0.29,0.33]	chr1	30600	8	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	UHMK1	ENSG00000152332.16	ENST00000545294.5:ENST00000538489.5:ENST00000489294.2:ENST00000282169.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	106	2	3.1738	3.61902	4.06424	0.0362747	0.0020563	0.127965	0.0235218
chr11	70574629	70574729	5060019	0	-	0.64	(0.58,1]	chr11	492663	713	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	46	2	2.6577	3.6189750000000003	4.58025	0.0695799	0.0172566	0.167028	0.0923809
chr16	29264316	29264416	6433480	0	+	0.56	(0.523,0.58]	chr16	636745	122	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	1	60	2	3.10715	3.61888	4.13061	0.0533354	0.0418959	0.167062	0.136901
chr17	80560975	80561075	6809062	0	+	0.38	(0.36,0.39]	chr17	687806	148	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	59	2	2.53819	3.618755	4.69932	0.0877431	0.0310559	0.183437	0.127822
chr10	103700710	103700810	4757107	0	-	0.58	(0.523,0.58]	chr10	454791	72	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	269	2	3.374	3.618405	3.86281	0.00531301	0.00140324	0.047841	0.0180327
chr16	85522380	85522480	6518295	0	+	0.66	(0.58,1]	chr16	646391	1631	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.15135	3.618345	5.08534	0.0825864	0.00549379	0.179396	0.0454065
chr15	56958274	56958374	6110739	0	+	0.4	(0.39,0.419]	chr15	601587	368	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.67669	3.61806	4.55943	0.104562	0.051368	0.19835	0.165482
chr3	65920165	65920265	1814680	0	-	0.41	(0.39,0.419]	chr3	187310	126	INTRON	INTRON	MAGI1:MAGI1-IT1	ENSG00000151276.24:ENSG00000272610.1	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5:ENST00000460754.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	1	42	2	2.67669	3.61806	4.55943	0.104562	0.051368	0.19835	0.165482
chr1	1022962	1023061	944	0	+	0.69697	(0.58,1]	chr1	166	1	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.47204	3.6174399999999998	4.76284	0.0623526	0.0471737	0.181127	0.143232
chr16	89308832	89308931	6659900	0	-	0.626263	(0.58,1]	chr16	666665	31	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1:ENST00000647539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.47204	3.6174399999999998	4.76284	0.0623526	0.0471737	0.181127	0.143232
chr17	66351245	66351344	6783917	0	+	0.585859	(0.58,1]	chr17	684230	113	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.47204	3.6174399999999998	4.76284	0.0623526	0.0471737	0.181127	0.143232
chr3	184362372	184362442	1644268	0	+	0.628571	(0.58,1]	chr3	172749	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POLR2H	ENSG00000163882.10	ENST00000456318.6:ENST00000412877.1:ENST00000438240.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.47204	3.6174399999999998	4.76284	0.0623526	0.0471737	0.181127	0.143232
chr6	143055611	143055711	3281630	0	-	0.4	(0.39,0.419]	chr6	317232	68	INTRON	INTRON	LINC01277	ENSG00000229017.7	ENST00000657496.1	lncRNA	lncRNA	lncRNA	lncRNA	2	59	2	2.5361	3.6170400000000003	4.69798	0.088901	0.0312392	0.183874	0.127822
chr19	57841415	57841511	7299524	0	+	0.354167	(0.33,0.36]	chr19	751827	7	CDS	CDS:EXON_MRNA:INTRON	ENSG00000268750:ZNF587B	ENSG00000268750.7:ENSG00000269343.9	ENST00000597134.5:ENST00000651253.2:ENST00000596498.2:ENST00000593873.6:ENST00000603271.1:ENST00000594328.1:ENST00000598031.1:ENST00000442832.8:ENST00000594901.2:ENST00000604231.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	2.46036	3.616955	4.77355	0.0735809	0.035284	0.17026	0.137983
chr21	37083256	37083353	7617511	0	+	0.42268	(0.419,0.45]	chr21	795681	18	UTR5	UTR5:EXON_MRNA:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2:ENST00000399017.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	163	2	2.87415	3.616365	4.35858	0.0380412	0.00126891	0.131324	0.0168159
chr2	210454007	210454107	1366680	0	-	0.31	(0.29,0.33]	chr2	145454	122	INTRON	INTRON	LANCL1	ENSG00000115365.12	ENST00000441020.7:ENST00000443314.5:ENST00000450366.7:ENST00000233714.8:ENST00000431941.6:ENST00000448951.5	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.57345	3.616065	4.65868	0.0735584	0.026427	0.17026	0.118113
chr10	75474709	75474809	4520905	0	+	0.48	(0.45,0.485]	chr10	432249	231	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	112	2	2.94003	3.615295	4.29056	0.0561701	0.00118176	0.154188	0.0159198
chr3	188284644	188284744	1653105	0	+	0.46	(0.45,0.485]	chr3	173754	441	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	3	147	2	3.58998	3.615015	3.64005	0.0186612	0.00234971	0.0934138	0.0258499
chr20	62959426	62959522	7508291	0	+	0.666667	(0.58,1]	chr20	783180	15	INTRON	INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	149	2	3.12738	3.6145050000000003	4.10163	0.00506731	0.00308082	0.0465789	0.0310143
chr16	89301936	89302036	6659828	0	-	0.65	(0.58,1]	chr16	666657	3	SS3_PROX	SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	356	2	3.1955	3.614495	4.03349	0.00667826	8.02068e-5	0.0541132	0.00232248
chr5	175881039	175881138	2594665	0	+	0.484848	(0.45,0.485]	chr5	257471	11	UTR3	UTR3:EXON_MRNA	CPLX2	ENSG00000145920.15	ENST00000359546.8:ENST00000393745.8	protein_coding	protein_coding	protein_coding	protein_coding	5	104	2	2.51784	3.61447	4.7111	0.0781398	0.0117581	0.175203	0.0743471
chr11	70885806	70885906	5063145	0	-	0.57	(0.523,0.58]	chr11	492728	128	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000645599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	51	2	2.6197	3.61419	4.60868	0.0853454	0.0226775	0.181766	0.108193
chr22	28932279	28932379	7705764	0	+	0.36	(0.33,0.36]	chr22	806321	144	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7:ENST00000402174.5	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.51922	3.61408	4.70894	0.0798152	0.0659899	0.189025	0.176933
chr16	46901983	46902082	6442603	0	+	0.565657	(0.523,0.58]	chr16	639007	8	INTRON	INTRON	GPT2	ENSG00000166123.14	ENST00000340124.9:ENST00000562132.5:ENST00000440783.2	protein_coding	protein_coding	protein_coding	protein_coding	4	194	2	3.31893	3.613805	3.90868	0.0145658	8.67751e-4	0.0824453	0.0128564
chr12	23941773	23941873	5388443	0	-	0.31	(0.29,0.33]	chr12	528193	208	INTRON	INTRON	SOX5	ENSG00000134532.19	ENST00000451604.7:ENST00000381381.6:ENST00000537393.5:ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2:ENST00000538083.1:ENST00000536729.2:ENST00000446891.7:ENST00000536850.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	77	2	2.0987	3.6132	5.1277	0.0382902	0.0363489	0.139793	0.131324
chr11	75305952	75306052	5079165	0	-	0.54	(0.523,0.58]	chr11	494228	24	INTRON	INTRON	ARRB1	ENSG00000137486.17	ENST00000420843.7:ENST00000360025.7:ENST00000532525.1:ENST00000524400.5:ENST00000533609.5:ENST00000533255.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	52	2	2.70025	3.6125749999999996	4.5249	0.0763549	0.0266135	0.174544	0.118113
chr22	37514411	37514511	7808351	0	-	0.57	(0.523,0.58]	chr22	818440	4	SS5_PROX	SS5_PROX:INTRON	CARD10	ENSG00000100065.15	ENST00000403299.5:ENST00000251973.10:ENST00000494166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	52	2	2.70025	3.6125749999999996	4.5249	0.0763549	0.0266135	0.174544	0.118113
chr2	3304383	3304483	1081151	0	-	0.6	(0.58,1]	chr2	117633	217	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	45	2	2.56085	3.6125049999999996	4.66416	0.0803939	0.0144381	0.177452	0.0833845
chr8	22560541	22560639	3771898	0	+	0.438776	(0.419,0.45]	chr8	362926	20	INTRON	INTRON	SORBS3	ENSG00000120896.14	ENST00000240123.12:ENST00000517500.5:ENST00000517535.5:ENST00000523402.5:ENST00000520563.3:ENST00000524057.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	77	2	2.18453	3.612285	5.04004	0.101185	0.0137308	0.196131	0.0814223
chr16	84087660	84087760	6648964	0	-	0.57	(0.523,0.58]	chr16	665116	2	SS3_PROX	SS3_PROX:INTRON	MBTPS1	ENSG00000140943.18	ENST00000343411.8:ENST00000569770.5:ENST00000563231.5:ENST00000565863.1:ENST00000570012.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	106	2	3.10715	3.612235	4.11732	0.0418959	0.00168626	0.136901	0.0204375
chr2	11579615	11579713	720669	0	+	0.520408	(0.485,0.523]	chr2	84132	8	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000263834.9:ENST00000389825.7:ENST00000381483.6:ENST00000234142.9	protein_coding	protein_coding	protein_coding	protein_coding	2	106	2	3.16729	3.6116849999999996	4.05608	0.0380541	0.00203265	0.131324	0.0232814
chr9	129499354	129499452	4250770	0	+	0.540816	(0.523,0.58]	chr9	404726	5	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	156	2	2.2167	3.61132	5.00594	0.0865899	1.28987e-4	0.182221	0.00330377
chr10	133348490	133348590	4783419	0	-	0.52	(0.485,0.523]	chr10	457516	23	INTRON	INTRON	ENSG00000226699	ENSG00000226699.1	ENST00000452591.1	lncRNA	lncRNA	lncRNA	lncRNA	1	57	2	2.98607	3.611175	4.23628	0.0503063	0.045492200000000003	0.154539	0.148176
chr1	155976384	155976483	599945	0	-	0.616162	(0.58,1]	chr1	70603	42	INTRON	INTRON	ARHGEF2	ENSG00000116584.22	ENST00000313695.11:ENST00000361247.9:ENST00000477754.2:ENST00000673475.1:ENST00000462460.6:ENST00000313667.8:ENST00000471589.5:ENST00000476273.1:ENST00000497907.5:ENST00000465079.1:ENST00000495070.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	44	2	2.40217	3.610395	4.81862	0.100879	0.0102696	0.196131	0.0678072
chr9	2792384	2792484	4269292	0	-	0.41	(0.39,0.419]	chr9	407781	92	INTRON	INTRON	PUM3	ENSG00000080608.10	ENST00000490444.2	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	156	2	3.50538	3.610365	3.71535	0.0257462	0.00198458	0.109555	0.0229168
chr14	103104166	103104266	5921856	0	+	0.76	(0.58,1]	chr14	579212	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000559116.1:ENST00000560925.5:ENST00000560102.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	49	2	2.27185	3.610335	4.94882	0.0433824	0.0354433	0.152119	0.127188
chr14	89339948	89340048	6027502	0	-	0.41	(0.39,0.419]	chr14	591456	63	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	57	2	2.33678	3.61022	4.88366	0.0707789	0.0461697	0.168159	0.155334
chr3	13273811	13273911	1691880	0	-	0.69	(0.58,1]	chr3	176566	1093	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.21459	3.61022	5.00585	0.0487458	0.0323732	0.160725	0.121593
chr16	81543881	81543981	6508732	0	+	0.4	(0.39,0.419]	chr16	645911	480	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	3	156	2	3.38413	3.610165	3.8362	0.0150537	0.00460829	0.0840434	0.0406889
chr2	100856705	100856805	858778	0	+	0.58	(0.523,0.58]	chr2	97321	96	INTRON	INTRON	NPAS2	ENSG00000170485.17	ENST00000335681.10:ENST00000427413.5	protein_coding	protein_coding	protein_coding	protein_coding	4	74	2	1.91177	3.60986	5.30795	0.0524626	0.0315825	0.167062	0.120781
chr6	166954304	166954401	3302036	0	-	0.43299	(0.419,0.45]	chr6	319750	19	EXON_MRNA	EXON_MRNA:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000358165.7:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	145	2	2.92628	3.6098500000000002	4.29342	0.0526662	0.025954	0.167062	0.109673
chr6	47624520	47624618	2923909	0	+	0.22449	[0,0.29]	chr6	287910	4	UTR3	UTR3:EXON_MRNA	CD2AP	ENSG00000198087.7	ENST00000359314.5	protein_coding	protein_coding	protein_coding	protein_coding	4	71	2	1.78827	3.609565	5.43086	0.0651283	0.0170186	0.186892	0.0889995
chr1	213990081	213990181	339376	0	+	0.31	(0.29,0.33]	chr1	38088	3	SS5_PROX	SS5_PROX:INTRON	PROX1	ENSG00000117707.16	ENST00000471129.1:ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2:ENST00000607425.1	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.49267	3.60951	4.72635	0.0672935	0.0313211	0.163263	0.127822
chr11	68351907	68352006	4882477	0	+	0.636364	(0.58,1]	chr11	470548	33	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	133	2	2.97017	3.6094850000000003	4.2488	0.00858469	0.0037252	0.0612699	0.0392361
chr1	12597405	12597505	402578	0	-	0.48	(0.45,0.485]	chr1	46226	12	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	66	2	2.05731	3.6094	5.16149	0.0514401	0.0427653	0.165698	0.13762
chr2	74032804	74032904	834327	0	+	0.47	(0.45,0.485]	chr2	94249	293	INTRON	INTRON	TET3	ENSG00000187605.16	ENST00000409262.8:ENST00000305799.8	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	2.05731	3.6094	5.16149	0.0514401	0.0427653	0.165698	0.13762
chr7	47478104	47478204	3588589	0	-	0.63	(0.58,1]	chr7	346123	250	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	3	125	2	3.2803	3.6090150000000003	3.93773	0.00708574	0.00374905	0.0558168	0.0352817
chr7	47353327	47353427	3587324	0	-	0.52	(0.485,0.523]	chr7	346030	66	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	7	322	2	3.47088	3.60853	3.74618	0.00753747	4.85557e-4	0.0578091	0.00857996
chr7	220451	220551	3305859	0	+	0.61	(0.58,1]	chr7	320161	111	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	2	92	2	3.26123	3.60848	3.95573	0.0257049	0.00191878	0.109543	0.0223755
chr6	160108244	160108343	3066729	0	+	0.575758	(0.523,0.58]	chr6	298183	33	UTR3	UTR3:EXON_MRNA:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000475584.1:ENST00000678224.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	55	2	2.56415	3.6078600000000005	4.65157	0.0787008	0.0263234	0.175203	0.117901
chr7	107446626	107446726	3675493	0	-	0.57	(0.523,0.58]	chr7	354234	336	INTRON	INTRON	COG5	ENSG00000164597.15	ENST00000297135.9:ENST00000347053.8:ENST00000393603.7:ENST00000484237.5:ENST00000475638.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.14543	3.6075	5.06957	0.0609283	0.0448011	0.179956	0.140478
chr3	149656575	149656675	1941190	0	-	0.47	(0.45,0.485]	chr3	197500	3	SS5_PROX	SS5_PROX:INTRON	WWTR1	ENSG00000018408.15	ENST00000465804.5:ENST00000360632.8:ENST00000467467.5:ENST00000479238.1	protein_coding	protein_coding	protein_coding	protein_coding	2	110	2	3.44977	3.60717	3.76457	0.0255605	0.00463252	0.109062	0.0408278
chr16	81543382	81543482	6508727	0	+	0.63	(0.58,1]	chr16	645911	475	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	99	2	3.39676	3.60693	3.8171	0.0090206	0.0085026	0.0637469	0.0608246
chr9	123549174	123549274	4398068	0	-	0.53	(0.523,0.58]	chr9	419652	632	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	71	2	2.24595	3.6065449999999997	4.96714	0.0830542	0.0108948	0.180329	0.0706366
chr3	32855322	32855421	1439245	0	+	0.606061	(0.58,1]	chr3	153401	360	INTRON	INTRON	TRIM71	ENSG00000206557.6	ENST00000383763.6	protein_coding	protein_coding	protein_coding	protein_coding	2	96	2	3.52722	3.60634	3.68546	0.0116759	0.00611467	0.0735761	0.0489549
chr5	32158363	32158462	2630498	0	-	0.424242	(0.419,0.45]	chr5	261026	141	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	193	2	3.48878	3.606335	3.72389	0.0193862	0.00213638	0.0955413	0.0240825
chr11	57798660	57798757	4857937	0	+	0.43299	(0.419,0.45]	chr11	465214	13	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1:ENST00000681984.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	118	2	3.30797	3.60617	3.90437	0.0368429	0.00396391	0.129203	0.0368027
chr19	42328423	42328523	7265029	0	+	0.45	(0.419,0.45]	chr19	745520	16	INTRON	INTRON	MEGF8	ENSG00000105429.13	ENST00000334370.8:ENST00000378073.5:ENST00000251268.11	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.52086	3.605595	4.69033	0.0958674	0.0683849	0.193274	0.189038
chr10	132756572	132756672	4619038	0	+	0.58	(0.523,0.58]	chr10	441201	27	INTRON	INTRON	INPP5A	ENSG00000068383.19	ENST00000368594.8:ENST00000368593.7:ENST00000342652.6	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.09041	3.605455	5.1205	0.0674148	0.0416463	0.192827	0.136301
chr16	961949	962049	6531655	0	-	0.62	(0.58,1]	chr16	648714	69	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1:ENST00000566609.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	37	2	2.38295	3.6052400000000002	4.82753	0.0730701	0.0427798	0.199669	0.13762
chr16	81609633	81609729	6509391	0	+	0.59375	(0.58,1]	chr16	645917	16	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.38295	3.6052400000000002	4.82753	0.0730701	0.0427798	0.199669	0.13762
chr19	4012126	4012225	7192343	0	+	0.626263	(0.58,1]	chr19	732461	40	INTRON	INTRON	PIAS4	ENSG00000105229.7	ENST00000262971.3:ENST00000599999.5:ENST00000600566.5:ENST00000593518.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	37	2	2.38295	3.6052400000000002	4.82753	0.0730701	0.0427798	0.199669	0.13762
chr6	41578980	41579079	2912839	0	+	0.646465	(0.58,1]	chr6	285776	5	INTRON	INTRON	FOXP4	ENSG00000137166.17	ENST00000307972.10:ENST00000373063.7:ENST00000409208.5:ENST00000373057.7:ENST00000451305.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.38295	3.6052400000000002	4.82753	0.0730701	0.0427798	0.199669	0.13762
chr10	75726748	75726848	4523431	0	+	0.5	(0.485,0.523]	chr10	432271	788	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	107	2	2.98607	3.605005	4.22394	0.0503063	0.00129102	0.148176	0.0170457
chr6	87697816	87697916	3198383	0	-	0.34	(0.33,0.36]	chr6	310371	157	INTRON	INTRON	AKIRIN2	ENSG00000135334.9	ENST00000257787.6	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.7141	3.6049100000000003	4.49572	0.103264	0.0468071	0.197541	0.156817
chr19	945012	945112	7185296	0	+	0.68	(0.58,1]	chr19	730741	119	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	125	2	3.25213	3.604505	3.95688	0.00681628	0.00405239	0.0548279	0.0371518
chr11	70948207	70948307	5063773	0	-	0.43	(0.419,0.45]	chr11	492740	513	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000618363.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	2.58571	3.6042199999999998	4.62273	0.103601	0.0613171	0.197541	0.18013
chr16	16155031	16155124	6556401	0	-	0.548387	(0.523,0.58]	chr16	653054	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6:ENST00000576204.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	198	2	3.4103	3.6042199999999998	3.79814	0.0132922	0.00126443	0.0787251	0.0167724
chr4	128837381	128837480	2131855	0	+	0.434343	(0.419,0.45]	chr4	216530	52	INTRON	INTRON	JADE1	ENSG00000077684.16	ENST00000226319.11:ENST00000511647.5:ENST00000452328.6:ENST00000504089.5:ENST00000512960.5:ENST00000503785.5:ENST00000610919.4:ENST00000510308.5:ENST00000511925.5:ENST00000413543.6:ENST00000611140.4:ENST00000507833.5:ENST00000508997.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	42	2	2.58571	3.6042199999999998	4.62273	0.103601	0.0613171	0.197541	0.18013
chr9	131430359	131430459	4257981	0	+	0.45	(0.419,0.45]	chr9	405614	1	SS5_PROX	SS5_PROX:INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.58571	3.6042199999999998	4.62273	0.103601	0.0613171	0.197541	0.18013
chr20	23635467	23635567	7537538	0	-	0.62	(0.58,1]	chr20	786645	1	SS3_PROX	SS3_PROX:INTRON	CST3	ENSG00000101439.9	ENST00000398411.5:ENST00000398409.1:ENST00000376925.8	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.37998	3.6037550000000005	4.82753	0.0427798	0.0345705	0.13762	0.135397
chr13	51414642	51414742	5715544	0	-	0.29	[0,0.29]	chr13	560749	115	INTRON	INTRON	INTS6	ENSG00000102786.15	ENST00000398119.6:ENST00000311234.9:ENST00000469430.5:ENST00000497989.5:ENST00000486195.6:ENST00000491189.5:ENST00000466784.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.66408	3.603415	4.54275	0.0681032	0.0466601	0.164448	0.156477
chr6	36067103	36067202	2904692	0	+	0.282828	[0,0.29]	chr6	284907	74	INTRON	INTRON	MAPK14	ENSG00000112062.11	ENST00000622903.4:ENST00000229795.7:ENST00000468133.5:ENST00000229794.9:ENST00000310795.8:ENST00000491957.5:ENST00000496250.5:ENST00000474429.5:ENST00000472333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.66408	3.603415	4.54275	0.0681032	0.0466601	0.164448	0.156477
chr17	82151059	82151159	6987884	0	-	0.62	(0.58,1]	chr17	714578	1	SS5_PROX	SS5_PROX:INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000419322.6:ENST00000392346.6:ENST00000582040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	92	2	3.13234	3.60332	4.0743	0.0322188	0.00136577	0.121593	0.0176851
chr6	349836	349935	2824333	0	+	0.626263	(0.58,1]	chr6	277235	10	UTR3	UTR3:EXON_MRNA:INTRON	DUSP22	ENSG00000112679.15	ENST00000344450.9:ENST00000419235.7:ENST00000603726.5:ENST00000604971.5:ENST00000604988.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	61	2	2.37881	3.6031700000000004	4.82753	0.0427798	0.0219036	0.13762	0.106977
chr7	47326975	47327075	3587058	0	-	0.62	(0.58,1]	chr7	346016	216	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.09276	3.603155	5.11355	0.0619333	0.0271806	0.180615	0.112113
chr16	84735872	84735970	6514188	0	+	0.44898	(0.419,0.45]	chr16	646283	20	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	118	2	3.35317	3.60289	3.85261	0.0344362	0.00448861	0.126025	0.0399092
chr3	188266252	188266351	1652921	0	+	0.373737	(0.36,0.39]	chr3	173754	257	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.00816	3.602645	5.19713	0.0594067	0.0462258	0.176539	0.143138
chr17	19665945	19666044	6696198	0	+	0.484848	(0.45,0.485]	chr17	672344	5	INTRON	INTRON	ALDH3A2	ENSG00000072210.19	ENST00000581518.6:ENST00000673136.1:ENST00000672465.1:ENST00000631291.2:ENST00000672357.1:ENST00000579855.5:ENST00000176643.11:ENST00000339618.8:ENST00000672564.1:ENST00000671878.1:ENST00000582991.6:ENST00000395575.7:ENST00000672487.1:ENST00000630662.2:ENST00000472059.6:ENST00000672567.1:ENST00000672709.1:ENST00000672059.1:ENST00000673472.1:ENST00000672608.1:ENST00000476965.5:ENST00000574078.3:ENST00000673064.1:ENST00000673516.1:ENST00000672591.1:ENST00000571163.2:ENST00000573947.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.5616	3.60253	4.64346	0.0850039	0.0598406	0.181766	0.177269
chr6	32165956	32166046	2895745	0	+	0.466667	(0.45,0.485]	chr6	283523	9	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	PPT2-EGFL8:EGFL8	ENSG00000258388.7:ENSG00000241404.7	ENST00000428388.6:ENST00000585246.5:ENST00000422437.5:ENST00000453656.6:ENST00000583227.5:ENST00000479001.2:ENST00000421600.2:ENST00000333845.11:ENST00000395512.5:ENST00000432129.1:ENST00000466239.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.5616	3.60253	4.64346	0.0850039	0.0598406	0.181766	0.177269
chr8	22388557	22388656	3770234	0	+	0.636364	(0.58,1]	chr8	362727	87	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	5	201	2	3.02058	3.60213	4.18368	0.0123729	2.45604e-4	0.0759278	0.00524396
chr9	133836735	133836834	4428765	0	-	0.515152	(0.485,0.523]	chr9	423304	20	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.1863	3.601745	5.01719	0.0567965	0.0480495	0.172995	0.144601
chr16	87860006	87860105	6657074	0	-	0.454545	(0.45,0.485]	chr16	666007	78	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.14074	3.60106	5.06138	0.0632663	0.0492008	0.183518	0.146142
chr2	200393273	200393373	986834	0	+	0.46	(0.45,0.485]	chr2	108325	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SPATS2L	ENSG00000196141.14	ENST00000439084.5:ENST00000409718.5:ENST00000358677.9:ENST00000409988.7:ENST00000409385.5:ENST00000439395.5:ENST00000444012.5:ENST00000451764.6:ENST00000360760.9:ENST00000423749.5:ENST00000457757.5:ENST00000453663.5:ENST00000409140.8:ENST00000409397.6:ENST00000619961.4:ENST00000409151.5:ENST00000421573.5:ENST00000449647.5:ENST00000438761.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.62955	3.601025	4.5725	0.0926859	0.0530416	0.188571	0.167062
chr3	51664212	51664311	1472182	0	+	0.464646	(0.45,0.485]	chr3	157989	9	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.62955	3.601025	4.5725	0.0926859	0.0530416	0.188571	0.167062
chr6	158327767	158327867	3061799	0	+	0.34	(0.33,0.36]	chr6	297592	131	INTRON	INTRON	ENSG00000274023:TULP4	ENSG00000274023.1:ENSG00000130338.13	ENST00000619713.1:ENST00000367097.8:ENST00000367094.6:ENST00000616856.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	2	55	2	2.19524	3.60083	5.00642	0.0586798	0.0542065	0.176098	0.151733
chr22	46919840	46919940	7746593	0	+	0.47	(0.45,0.485]	chr22	812232	60	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.49029	3.600695	4.7111	0.0781398	0.0676934	0.193219	0.175203
chr16	81681915	81682015	6510130	0	+	0.62	(0.58,1]	chr16	645979	29	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.45703	3.600245	4.74346	0.0933945	0.0121457	0.188571	0.0754623
chr19	18591153	18591252	7348747	0	-	0.585859	(0.58,1]	chr19	761569	72	INTRON	INTRON	CRLF1	ENSG00000006016.12	ENST00000594325.1	protein_coding	processed_transcript	protein_coding	processed_transcript	1	44	2	2.45703	3.600245	4.74346	0.0933945	0.0121457	0.188571	0.0754623
chr20	62054004	62054104	7583688	0	-	0.64	(0.58,1]	chr20	792369	389	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000252996.9:ENST00000608887.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.45703	3.600245	4.74346	0.0933945	0.0121457	0.188571	0.0754623
chr8	43100668	43100768	3811237	0	+	0.59	(0.58,1]	chr8	367069	4	SS5_PROX	SS5_PROX:INTRON	POMK	ENSG00000185900.11	ENST00000676193.1:ENST00000331373.10:ENST00000674727.1:ENST00000518991.6:ENST00000676163.1:ENST00000675129.1:ENST00000675791.1:ENST00000675013.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	44	2	2.45703	3.600245	4.74346	0.0933945	0.0121457	0.188571	0.0754623
chr17	17823417	17823517	6865755	0	-	0.6	(0.58,1]	chr17	695917	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	127	2	3.13356	3.60017	4.06678	0.00559148	0.00544536	0.0486855	0.0460395
chr12	2851167	2851267	5156908	0	+	0.4	(0.39,0.419]	chr12	501133	98	INTRON	INTRON	ITFG2	ENSG00000111203.13	ENST00000644123.1:ENST00000644517.1:ENST00000645513.1:ENST00000643039.1:ENST00000537710.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	3	156	2	3.4203	3.59998	3.77966	0.0294197	0.00167635	0.116079	0.0203806
chr17	17733254	17733354	6689368	0	+	0.49	(0.485,0.523]	chr17	671344	87	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.0783	3.59961	5.12092	0.0693	0.0414411	0.194071	0.136301
chr17	43546913	43547013	6739034	0	+	0.49	(0.485,0.523]	chr17	678633	17	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	53	2	2.0783	3.59961	5.12092	0.0693	0.0414411	0.194071	0.136301
chr16	52517106	52517206	6589560	0	-	0.4	(0.39,0.419]	chr16	658702	411	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	56	2	2.20247	3.598925	4.99538	0.0613573	0.0592353	0.176157	0.158506
chr7	127724299	127724399	3468959	0	+	0.4	(0.39,0.419]	chr7	335380	25	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	56	2	2.20247	3.598925	4.99538	0.0613573	0.0592353	0.176157	0.158506
chr22	15818684	15818780	7682911	0	+	0.552083	(0.523,0.58]	chr22	803567	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000383038.7:ENST00000447898.5:ENST00000607933.1	lncRNA	lncRNA	lncRNA	lncRNA	12	409	2	2.85662	3.598605	4.34059	0.00246472	0.00208484	0.0287557	0.0265942
chr12	50613281	50613381	5230539	0	+	0.35	(0.33,0.36]	chr12	507705	1077	INTRON	INTRON	DIP2B	ENSG00000066084.13	ENST00000301180.10:ENST00000549620.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	115	2	2.82822	3.5984	4.36858	0.0666181	0.00105616	0.162606	0.0147548
chr11	57764132	57764232	4857581	0	+	0.4	(0.39,0.419]	chr11	465173	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	57	2	2.80031	3.5982649999999996	4.39622	0.0728013	0.042449	0.169397	0.149195
chr10	130171383	130171483	4615884	0	+	0.53	(0.523,0.58]	chr10	441027	4	SS3_PROX	SS3_PROX:INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.61478	3.5976800000000004	4.58058	0.0860403	0.052707	0.181766	0.167062
chr19	46977392	46977492	7275347	0	+	0.58	(0.523,0.58]	chr19	747275	396	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.61478	3.5976800000000004	4.58058	0.0860403	0.052707	0.181766	0.167062
chr7	47384109	47384209	3587633	0	-	0.53	(0.523,0.58]	chr7	346036	141	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.61478	3.5976800000000004	4.58058	0.0860403	0.052707	0.181766	0.167062
chr6	1824349	1824449	3081116	0	-	0.46	(0.45,0.485]	chr6	299482	814	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	57	2	2.62266	3.5975799999999998	4.5725	0.0926859	0.0243222	0.188571	0.113231
chr10	75470012	75470112	4520858	0	+	0.45	(0.419,0.45]	chr10	432249	184	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.50478	3.597555	4.69033	0.0958674	0.0340831	0.189038	0.134158
chr15	78040121	78040220	6336246	0	-	0.535354	(0.523,0.58]	chr15	624588	96	INTRON	INTRON	TBC1D2B	ENSG00000167202.12	ENST00000300584.8:ENST00000409931.7:ENST00000435468.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.54344	3.597505	4.65157	0.0787008	0.0599121	0.177269	0.175203
chr1	157013038	157013138	603876	0	-	0.47	(0.45,0.485]	chr1	71589	265	INTRON	INTRON	ARHGEF11	ENSG00000132694.19	ENST00000368194.8:ENST00000361409.2	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.24119	3.5974950000000003	4.9538	0.0569772	0.0525018	0.167062	0.154343
chr8	22377127	22377227	3770119	0	+	0.27	[0,0.29]	chr8	362721	90	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.25193	3.59708	4.94223	0.0483361	0.0379936	0.159813	0.131324
chr9	124654707	124654807	4404192	0	-	0.37	(0.36,0.39]	chr9	419893	590	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	2	118	2	2.84128	3.59666	4.35204	0.0684007	0.00120025	0.164885	0.016121
chr6	158039837	158039936	3059896	0	+	0.676768	(0.58,1]	chr6	297390	58	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	59	2	2.18459	3.59522	5.00585	0.0341377	0.0323732	0.134338	0.121593
chr22	46917842	46917942	7746573	0	+	0.64	(0.58,1]	chr22	812232	40	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.61009	3.5951700000000004	4.58025	0.0747426	0.0172566	0.172361	0.0923809
chr4	3218830	3218924	2004086	0	+	0.648936	(0.58,1]	chr4	204561	5	INTRON	INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000510626.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	45	2	2.61009	3.5951700000000004	4.58025	0.0747426	0.0172566	0.172361	0.0923809
chr22	32821592	32821692	7717825	0	+	0.58	(0.523,0.58]	chr22	807776	191	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.84901	3.5950949999999997	4.34118	0.0617545	0.0372357	0.158869	0.139793
chr7	130901442	130901541	3710990	0	-	0.59596	(0.58,1]	chr7	356708	167	INTRON	INTRON	ENSG00000226380	ENSG00000226380.9	ENST00000432045.6:ENST00000447307.5:ENST00000418546.1	lncRNA	lncRNA	lncRNA	lncRNA	6	232	2	3.35701	3.594915	3.83282	0.00953031	2.22269e-4	0.0658012	0.00488731
chr10	95327377	95327477	4732896	0	-	0.52	(0.485,0.523]	chr10	451855	42	INTRON	INTRON	SORBS1	ENSG00000095637.23	ENST00000371227.8:ENST00000306402.10:ENST00000371249.6:ENST00000371247.7:ENST00000649911.1:ENST00000371246.6:ENST00000634504.1:ENST00000607232.5:ENST00000361941.7:ENST00000277982.9:ENST00000371245.7:ENST00000649575.1:ENST00000371241.5:ENST00000354106.7:ENST00000371239.5	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.95352	3.5949	4.23628	0.0528263	0.045492200000000003	0.154539	0.14912
chr7	130909615	130909715	3711072	0	-	0.62	(0.58,1]	chr7	356708	249	INTRON	INTRON	ENSG00000226380	ENSG00000226380.9	ENST00000432045.6:ENST00000447307.5:ENST00000418546.1	lncRNA	lncRNA	lncRNA	lncRNA	11	347	2	3.36605	3.59452	3.82299	0.00360148	3.6922e-4	0.0385293	0.00704866
chr1	236006734	236006833	693155	0	-	0.535354	(0.523,0.58]	chr1	81538	125	INTRON	INTRON	NID1	ENSG00000116962.15	ENST00000366595.7:ENST00000264187.7	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.68276	3.594345	4.50593	0.094303	0.0464998	0.188571	0.156036
chr16	3679518	3679618	6537943	0	-	0.55	(0.523,0.58]	chr16	650184	4	SS5_PROX	SS5_PROX:INTRON	TRAP1	ENSG00000126602.11	ENST00000246957.10:ENST00000538171.5:ENST00000576335.5:ENST00000571804.5:ENST00000574941.5:ENST00000576106.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.68276	3.594345	4.50593	0.094303	0.0464998	0.188571	0.156036
chr9	134336041	134336141	4260783	0	+	0.65	(0.58,1]	chr9	406311	90	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	2.79178	3.5939900000000002	4.3962	0.0565563	0.0250928	0.154343	0.114418
chr20	49664298	49664398	7575679	0	-	0.55	(0.523,0.58]	chr20	791530	72	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	2	105	2	3.40026	3.593905	3.78755	0.0262178	0.00401039	0.110264	0.0371192
chr2	239279179	239279279	1391500	0	-	0.54	(0.523,0.58]	chr2	148740	276	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	39	2	2.46839	3.5938049999999997	4.71922	0.0721601	0.0683019	0.193274	0.168159
chr8	128040283	128040383	3920284	0	+	0.49	(0.485,0.523]	chr8	374320	4	SS5_PROX	SS5_PROX:INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	2	114	2	2.62192	3.5934999999999997	4.56508	0.0849566	4.94211e-4	0.181766	0.00865935
chr20	44409243	44409342	7483013	0	+	0.444444	(0.419,0.45]	chr20	779658	6	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000619550.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	69	2	2.0464	3.5934500000000003	5.1405	0.0564353	0.0550015	0.171982	0.153337
chr4	87137381	87137480	2081143	0	+	0.50505	(0.485,0.523]	chr4	212308	18	UTR3	UTR3:EXON_MRNA	AFF1	ENSG00000172493.23	ENST00000395146.9:ENST00000544085.6:ENST00000307808.10	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.57989	3.592535	4.60518	0.0899526	0.0233371	0.185791	0.110098
chr15	64343284	64343383	6300641	0	-	0.494949	(0.485,0.523]	chr15	620884	2	INTRON	INTRON	CSNK1G1:ENSG00000259316	ENSG00000169118.18:ENSG00000259316.12	ENST00000303052.13:ENST00000607537.6:ENST00000634654.1:ENST00000634811.1:ENST00000606793.3:ENST00000634251.1:ENST00000634847.3:ENST00000635529.1:ENST00000634318.1:ENST00000635160.1:ENST00000635704.1:ENST00000634529.1:ENST00000635511.1:ENST00000635605.1:ENST00000635593.1:ENST00000634259.2:ENST00000560278.2:ENST00000635413.1:ENST00000634538.1:ENST00000635320.1:ENST00000558783.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.60361	3.5923050000000005	4.581	0.085711	0.0541523	0.181766	0.167824
chr1	1220764	1220862	380394	0	-	0.612245	(0.58,1]	chr1	42840	19	EXON_MRNA	EXON_MRNA:INTRON	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000494748.1:ENST00000403997.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.63525	3.59226	4.54927	0.0643046	0.0459151	0.161669	0.154743
chr19	57395875	57395971	7296614	0	+	0.59375	(0.58,1]	chr19	751442	13	INTRON	INTRON	ZNF548:ENSG00000268533	ENSG00000188785.12:ENSG00000268533.1	ENST00000366197.9:ENST00000336128.12:ENST00000597400.5:ENST00000596282.5:ENST00000598895.5:ENST00000602086.5:ENST00000597047.1:ENST00000600442.5:ENST00000594693.5:ENST00000594668.5:ENST00000600927.1:ENST00000597410.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.63525	3.59226	4.54927	0.0643046	0.0459151	0.161669	0.154743
chr3	126350843	126350943	1907177	0	-	0.59	(0.58,1]	chr3	193539	66	INTRON	INTRON	KLF15	ENSG00000163884.4	ENST00000296233.4	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.63525	3.59226	4.54927	0.0643046	0.0459151	0.161669	0.154743
chr16	4490830	4490930	6378481	0	+	0.5	(0.485,0.523]	chr16	630681	17	INTRON	INTRON	HMOX2	ENSG00000103415.12	ENST00000575051.5:ENST00000406590.6:ENST00000619528.4:ENST00000619913.4:ENST00000458134.7:ENST00000219700.10:ENST00000570646.6:ENST00000575120.5:ENST00000574466.5:ENST00000572812.5:ENST00000576827.5:ENST00000574594.5:ENST00000570445.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.53228	3.59213	4.65198	0.0783889	0.0614918	0.18013	0.175203
chr19	47620198	47620298	7277818	0	+	0.51	(0.485,0.523]	chr19	747629	122	INTRON	INTRON	ENSG00000268746	ENSG00000268746.1	ENST00000599924.1	lncRNA	lncRNA	lncRNA	lncRNA	1	39	2	2.53228	3.59213	4.65198	0.0783889	0.0614918	0.18013	0.175203
chr3	188157649	188157748	1651829	0	+	0.50505	(0.485,0.523]	chr3	173733	30	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.53228	3.59213	4.65198	0.0783889	0.0614918	0.18013	0.175203
chr5	10713471	10713571	2612171	0	-	0.49	(0.485,0.523]	chr5	260254	295	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.53228	3.59213	4.65198	0.0783889	0.0614918	0.18013	0.175203
chr1	16147781	16147877	404075	0	-	0.354167	(0.33,0.36]	chr1	46487	15	INTRON	INTRON	EPHA2	ENSG00000142627.13	ENST00000358432.8	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.28913	3.591905	4.89468	0.0629186	0.0492629	0.160778	0.160725
chr1	95242447	95242544	190288	0	+	0.371134	(0.36,0.39]	chr1	20632	22	INTRON	INTRON	TLCD4-RWDD3:RWDD3	ENSG00000271092.5:ENSG00000122481.17	ENST00000604534.5:ENST00000604203.1:ENST00000370202.5:ENST00000263893.10:ENST00000492639.5:ENST00000495272.5:ENST00000497058.5:ENST00000473397.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.5517	3.5917000000000003	4.6317	0.0950937	0.0637554	0.189021	0.184651
chr2	235783866	235783966	1065447	0	+	0.38	(0.36,0.39]	chr2	115700	330	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000619456.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.48379	3.591555	4.69932	0.0877431	0.0714535	0.198579	0.183437
chr20	34471815	34471915	7461886	0	+	0.33	(0.29,0.33]	chr20	776788	3	SS5_PROX	SS5_PROX:INTRON	ITCH	ENSG00000078747.16	ENST00000374864.10:ENST00000535650.7:ENST00000670516.1:ENST00000665484.1:ENST00000664852.1:ENST00000660337.1:ENST00000262650.10:ENST00000665346.1:ENST00000483727.5:ENST00000461661.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	172	2	3.58552	3.59142	3.59732	0.0178581	0.00121802	0.0916899	0.0162881
chr20	410311	410411	7414512	0	+	0.49	(0.485,0.523]	chr20	772321	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBCK1	ENSG00000125826.21	ENST00000411647.5:ENST00000382214.7:ENST00000415942.5:ENST00000640614.1:ENST00000475269.5:ENST00000441733.5:ENST00000353660.7:ENST00000356286.10:ENST00000400245.3:ENST00000382181.2:ENST00000400247.3:ENST00000414880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	74	2	1.96506	3.591375	5.21769	0.0474329	0.0359739	0.157852	0.127853
chr13	98268900	98268999	5634920	0	+	0.474747	(0.45,0.485]	chr13	553480	237	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	2	79	2	2.51062	3.591005	4.67139	0.058349	0.0223378	0.155373	0.108193
chr6	16713984	16714084	3103985	0	-	0.48	(0.45,0.485]	chr6	300893	461	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6:ENST00000495178.1:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	108	2	3.09257	3.5903349999999996	4.0881	0.0447818	0.00202979	0.140478	0.0232814
chr3	134560694	134560791	1573789	0	+	0.402062	(0.39,0.419]	chr3	166916	14	EXON_MRNA	EXON_MRNA:INTRON	CEP63	ENSG00000182923.20	ENST00000683997.1:ENST00000683596.1:ENST00000684574.1:ENST00000650279.2:ENST00000683940.1:ENST00000332047.10:ENST00000684217.1:ENST00000684256.1:ENST00000354446.7:ENST00000683556.1:ENST00000684588.1:ENST00000682593.1:ENST00000682858.1:ENST00000683949.1:ENST00000684170.1:ENST00000682458.1:ENST00000682190.1:ENST00000682042.1:ENST00000683118.1:ENST00000682822.1:ENST00000620544.5:ENST00000383229.8:ENST00000675561.1:ENST00000683245.1:ENST00000508778.2:ENST00000684481.1:ENST00000514678.2:ENST00000682717.1:ENST00000683190.1:ENST00000682689.1:ENST00000684677.1:ENST00000682316.1:ENST00000683177.1:ENST00000683861.1:ENST00000512894.6:ENST00000682013.1:ENST00000682007.1:ENST00000682402.1:ENST00000682954.1:ENST00000684777.1:ENST00000683931.1:ENST00000683732.1:ENST00000684060.1:ENST00000513612.7:ENST00000606977.5:ENST00000683608.1:ENST00000682685.1:ENST00000684492.1:ENST00000682800.1:ENST00000683019.1:ENST00000510625.2:ENST00000683138.1:ENST00000684411.1:ENST00000682111.1:ENST00000682388.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	55	2	2.69557	3.590305	4.48504	0.0837871	0.0364893	0.181557	0.139793
chr13	33263759	33263859	5685235	0	-	0.35	(0.33,0.36]	chr13	558196	579	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	57	2	2.53891	3.59011	4.64131	0.0867669	0.0300873	0.182221	0.126768
chr14	89268453	89268553	6026783	0	-	0.36	(0.33,0.36]	chr14	591436	40	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	57	2	2.53891	3.59011	4.64131	0.0867669	0.0300873	0.182221	0.126768
chr16	2563485	2563583	6374605	0	+	0.663265	(0.58,1]	chr16	629895	12	INTRON	INTRON	PDPK1	ENSG00000140992.19	ENST00000566659.1:ENST00000441549.7:ENST00000268673.11:ENST00000342085.9:ENST00000389224.7:ENST00000461815.1:ENST00000491073.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.55596	3.589995	4.62403	0.0578275	0.0534085	0.167062	0.154343
chr17	77213313	77213402	6803105	0	+	0.640449	(0.58,1]	chr17	686678	1	CDS	CDS:EXON_MRNA:EXON_LNCRNA:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000585618.5:ENST00000436233.9:ENST00000443798.8:ENST00000591437.5:ENST00000431431.6:ENST00000588488.1:ENST00000587491.5:ENST00000591413.1:ENST00000588721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	36	2	2.55596	3.589995	4.62403	0.0578275	0.0534085	0.167062	0.154343
chr17	79024894	79024993	6981005	0	-	0.666667	(0.58,1]	chr17	712924	43	INTRON	INTRON	C1QTNF1-AS1	ENSG00000265096.3	ENST00000581579.2:ENST00000577521.1	lncRNA	lncRNA	lncRNA	lncRNA	1	36	2	2.55596	3.589995	4.62403	0.0578275	0.0534085	0.167062	0.154343
chr6	35496197	35496297	3125657	0	-	0.62	(0.58,1]	chr6	304825	91	INTRON	INTRON	TEAD3	ENSG00000007866.22	ENST00000338863.13:ENST00000402886.9:ENST00000639578.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.55596	3.589995	4.62403	0.0578275	0.0534085	0.167062	0.154343
chr6	52564410	52564510	3148322	0	-	0.59	(0.58,1]	chr6	307028	282	INTRON	INTRON	TRAM2	ENSG00000065308.5	ENST00000182527.4	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.55596	3.589995	4.62403	0.0578275	0.0534085	0.167062	0.154343
chr16	81682612	81682712	6510137	0	+	0.62	(0.58,1]	chr16	645979	36	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.2895	3.589785	4.89007	0.0665599	0.00872525	0.162495	0.0612699
chr7	66366438	66366537	3381169	0	+	0.515152	(0.485,0.523]	chr7	326271	61	INTRON	INTRON	TPST1	ENSG00000169902.15	ENST00000490159.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	127	2	3.02337	3.589425	4.15548	0.023933	0.00693242	0.111785	0.0553898
chr14	68974464	68974564	6000101	0	-	0.57	(0.523,0.58]	chr14	588770	2	SS3_PROX	SS3_PROX:INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000683261.1:ENST00000553370.5:ENST00000682602.1:ENST00000556571.1:ENST00000553659.1:ENST00000556203.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	169	2	3.08341	3.5891349999999997	4.09486	0.00778716	0.00455306	0.0590114	0.040214
chr12	79637717	79637817	5461569	0	-	0.28	[0,0.29]	chr12	537126	17	INTRON	INTRON	PAWR	ENSG00000177425.11	ENST00000328827.9:ENST00000551712.1:ENST00000550006.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	2.92291	3.589095	4.25528	0.0470601	0.0399299	0.144065	0.143232
chr1	61710236	61710336	497023	0	-	0.5	(0.485,0.523]	chr1	59315	4	INTRON	INTRON	TM2D1	ENSG00000162604.12	ENST00000606498.5:ENST00000294613.9:ENST00000371180.6:ENST00000488206.5:ENST00000468586.5:ENST00000371178.5:ENST00000494926.5:ENST00000496465.1:ENST00000371177.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.67159	3.588965	4.50634	0.0939553	0.0478226	0.188571	0.1588
chr17	29083725	29083823	6875937	0	-	0.530612	(0.523,0.58]	chr17	697789	9	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000529578.5:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000546105.5:ENST00000527312.5:ENST00000531438.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	208	2	2.77183	3.58882	4.40581	0.0219168	7.57639e-4	0.101172	0.0117078
chr9	134372439	134372539	4261148	0	+	0.57	(0.523,0.58]	chr9	406314	3	SS5_PROX	SS5_PROX:INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2:ENST00000356384.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	49	2	2.48975	3.5888	4.68785	0.101574	0.0194172	0.196431	0.0994526
chr7	143882099	143882199	3729981	0	-	0.66	(0.58,1]	chr7	358297	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TCAF1	ENSG00000198420.10	ENST00000479870.6:ENST00000355951.2:ENST00000392900.3:ENST00000460532.5:ENST00000491908.1:ENST00000478172.1:ENST00000485416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	91	2	3.35086	3.5887000000000002	3.82654	0.0218816	0.00275362	0.101015	0.0285628
chr6	144583600	144583700	3022903	0	+	0.37	(0.36,0.39]	chr6	295438	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000367526.8	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.61656	3.58866	4.56076	0.103289	0.057025	0.197541	0.173546
chr6	117707112	117707210	2992529	0	+	0.408163	(0.39,0.419]	chr6	293157	2	UTR3	UTR3:EXON_MRNA	NUS1	ENSG00000153989.8	ENST00000368494.4	protein_coding	protein_coding	protein_coding	protein_coding	6	309	2	3.43894	3.5886500000000003	3.73836	0.0101367	0.00102516	0.0682324	0.01441
chr19	945611	945710	7185302	0	+	0.676768	(0.58,1]	chr19	730741	125	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	217	2	2.23753	3.5885749999999996	4.93962	0.0155042	8.1793e-4	0.0872232	0.0170128
chr1	43568790	43568889	107127	0	+	0.50505	(0.485,0.523]	chr1	13192	145	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.45723	3.588435	4.71964	0.0718646	0.0700289	0.195209	0.168159
chr16	73042561	73042661	6627835	0	-	0.52	(0.485,0.523]	chr16	663549	366	INTRON	INTRON	ZFHX3	ENSG00000140836.17	ENST00000641206.2:ENST00000397992.5:ENST00000268489.10	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.45723	3.588435	4.71964	0.0718646	0.0700289	0.195209	0.168159
chr16	81638669	81638769	6509684	0	+	0.49	(0.485,0.523]	chr16	645926	166	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.45723	3.588435	4.71964	0.0718646	0.0700289	0.195209	0.168159
chr2	134144778	134144878	895678	0	+	0.49	(0.485,0.523]	chr2	101196	172	INTRON	INTRON	MGAT5	ENSG00000152127.9	ENST00000468758.1:ENST00000481801.5:ENST00000409645.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.45723	3.588435	4.71964	0.0718646	0.0700289	0.195209	0.168159
chr22	46647126	46647226	7744649	0	+	0.5	(0.485,0.523]	chr22	812052	88	INTRON	INTRON	GRAMD4	ENSG00000075240.17	ENST00000406902.6:ENST00000361034.7	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.49197	3.5881549999999995	4.68434	0.10114	0.0200045	0.196131	0.100864
chr3	65418139	65418239	1809631	0	-	0.49	(0.485,0.523]	chr3	187193	163	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000621418.4:ENST00000611645.4:ENST00000463103.6:ENST00000483466.5:ENST00000460329.6:ENST00000497477.6:ENST00000472257.5	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.49197	3.5881549999999995	4.68434	0.10114	0.0200045	0.196131	0.100864
chr20	62273008	62273108	7506837	0	+	0.59	(0.58,1]	chr20	782706	3	SS3_PROX	SS3_PROX:INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000642957.1:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	206	2	3.32659	3.5879849999999998	3.84938	0.00660026	7.06615e-4	0.0539322	0.0111608
chr16	85399632	85399731	6517067	0	+	0.545455	(0.523,0.58]	chr16	646391	403	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.7389	3.587435	4.43597	0.072318	0.0313935	0.168347	0.127822
chr16	21515429	21515529	6564794	0	-	0.57	(0.523,0.58]	chr16	654787	89	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	63	2	1.86691	3.58743	5.30795	0.0717156	0.0315825	0.199212	0.120781
chr3	66011399	66011499	1815596	0	-	0.47	(0.45,0.485]	chr3	187318	23	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	108	2	3.38032	3.5874	3.79448	0.0285946	0.00430151	0.115498	0.0387835
chr6	170376598	170376698	3076342	0	+	0.53	(0.523,0.58]	chr6	299174	179	INTRON	INTRON	FAM120B	ENSG00000112584.14	ENST00000630384.2:ENST00000537664.5:ENST00000476287.4:ENST00000625626.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.52319	3.5873800000000005	4.65157	0.0787008	0.0287266	0.175203	0.123764
chr4	123399794	123399894	2122611	0	+	0.53	(0.523,0.58]	chr4	215785	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SPRY1	ENSG00000164056.11	ENST00000610581.4:ENST00000651917.1:ENST00000505319.5:ENST00000339241.1:ENST00000507703.1:ENST00000622283.1:ENST00000394339.2	protein_coding	protein_coding	protein_coding	protein_coding	2	106	2	3.51606	3.58725	3.65844	0.0216194	0.00554418	0.100615	0.0456911
chr4	2802397	2802497	2000125	0	+	0.31	(0.29,0.33]	chr4	203911	27	INTRON	INTRON	SH3BP2	ENSG00000087266.17	ENST00000503219.5:ENST00000512131.5:ENST00000503393.8:ENST00000510074.5:ENST00000511237.5:ENST00000504294.5:ENST00000508385.5:ENST00000513020.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.58669	3.58719	4.58769	0.0806047	0.0563947	0.177452	0.171933
chr11	86047185	86047285	5104290	0	-	0.31	(0.29,0.33]	chr11	495816	152	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.51537	3.587025	4.65868	0.0735584	0.0639396	0.184676	0.17026
chr10	80495181	80495281	4535531	0	+	0.4	(0.39,0.419]	chr10	432713	55	INTRON	INTRON	TSPAN14	ENSG00000108219.15	ENST00000429989.7:ENST00000481124.5:ENST00000372158.6:ENST00000372157.6:ENST00000469149.1:ENST00000372164.7:ENST00000341863.10:ENST00000372156.5:ENST00000616406.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	41	2	2.61462	3.5870249999999997	4.55943	0.104562	0.0572875	0.19835	0.174149
chr11	31500489	31500588	5021638	0	-	0.414141	(0.39,0.419]	chr11	485692	119	INTRON	INTRON	IMMP1L	ENSG00000148950.11	ENST00000532287.6:ENST00000534812.5:ENST00000526776.5:ENST00000278200.5:ENST00000648582.1:ENST00000533642.1:ENST00000527184.5:ENST00000528161.5:ENST00000532624.5:ENST00000529749.5:ENST00000530023.5:ENST00000531693.1:ENST00000532668.1:ENST00000533921.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.61462	3.5870249999999997	4.55943	0.104562	0.0572875	0.19835	0.174149
chr15	68217840	68217937	6311321	0	-	0.412371	(0.39,0.419]	chr15	622178	24	INTRON	INTRON	CLN6	ENSG00000128973.13	ENST00000249806.11:ENST00000638076.1:ENST00000565471.6:ENST00000637329.1:ENST00000567060.5:ENST00000566347.5:ENST00000538696.5:ENST00000635747.1:ENST00000637494.1:ENST00000638144.1:ENST00000636212.1:ENST00000637823.1:ENST00000637450.1:ENST00000637667.1:ENST00000564752.1:ENST00000563917.2:ENST00000636314.1:ENST00000637223.1:ENST00000564846.1:ENST00000636020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.61462	3.5870249999999997	4.55943	0.104562	0.0572875	0.19835	0.174149
chr2	202267278	202267377	993824	0	+	0.40404	(0.39,0.419]	chr2	109183	9	INTRON	INTRON	NOP58	ENSG00000055044.11	ENST00000488403.5:ENST00000426814.5:ENST00000264279.10:ENST00000472050.5:ENST00000492740.5:ENST00000467734.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	41	2	2.61462	3.5870249999999997	4.55943	0.104562	0.0572875	0.19835	0.174149
chr22	48752731	48752831	7751797	0	+	0.61	(0.58,1]	chr22	812294	9	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000336769.9	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.50987	3.587015	4.66416	0.0865901	0.0144381	0.182221	0.0833845
chr3	12964012	12964111	1688769	0	-	0.59596	(0.58,1]	chr3	176520	30	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.50987	3.587015	4.66416	0.0865901	0.0144381	0.182221	0.0833845
chr3	186103805	186103904	1972213	0	-	0.424242	(0.419,0.45]	chr3	200543	81	INTRON	INTRON	ETV5	ENSG00000244405.8	ENST00000306376.10:ENST00000434744.5:ENST00000472868.6:ENST00000440773.5:ENST00000421809.5:ENST00000413301.5:ENST00000422039.1:ENST00000476890.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	120	2	2.85295	3.5869649999999997	4.32098	0.0703179	0.00139866	0.168159	0.0179877
chr16	20684975	20685075	6416308	0	+	0.43	(0.419,0.45]	chr16	634386	29	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	310	2	3.19991	3.586905	3.9739	0.0228424	3.92748e-4	0.102982	0.00736824
chrX	133844468	133844568	8114612	0	-	0.47	(0.45,0.485]	chrX	845529	95	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	2.3351	3.5863250000000004	4.83755	0.06646	0.0438295	0.162385	0.153511
chr12	26531750	26531850	5398541	0	-	0.32	(0.29,0.33]	chr12	528527	361	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.57172	3.585825	4.59993	0.0888658	0.0243639	0.183874	0.113231
chr1	228142628	228142728	358010	0	+	0.61	(0.58,1]	chr1	40401	4	INTRON	INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	101	2	3.25332	3.585815	3.91831	0.0120565	0.00736882	0.0754623	0.0571679
chr7	5295134	5295234	3312058	0	+	0.52	(0.485,0.523]	chr7	321118	2	SS5_PROX	SS5_PROX:INTRON	SLC29A4	ENSG00000164638.11	ENST00000396872.8:ENST00000297195.8:ENST00000406453.3	protein_coding	protein_coding	protein_coding	protein_coding	2	104	2	3.16729	3.5857900000000003	4.00429	0.0380541	0.00233191	0.131324	0.0257012
chr22	31228014	31228113	7712095	0	+	0.414141	(0.39,0.419]	chr22	806999	18	INTRON	INTRON	LIMK2	ENSG00000182541.18	ENST00000462625.1:ENST00000406516.5:ENST00000331728.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	219	2	3.49034	3.5853	3.68026	0.0194541	0.00138473	0.0955413	0.0178906
chr2	175073526	175073625	1321455	0	-	0.262626	[0,0.29]	chr2	141112	14	UTR3	UTR3:EXON_MRNA	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5	protein_coding	protein_coding	protein_coding	protein_coding	3	131	2	3.15177	3.585255	4.01874	0.00636201	0.00624583	0.0527984	0.0497681
chr8	128033564	128033663	3920215	0	+	0.474747	(0.45,0.485]	chr8	374311	9	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1	lncRNA	lncRNA	lncRNA	lncRNA	3	65	2	2.05731	3.5848050000000002	5.1123	0.0514401	0.0458344	0.165698	0.142336
chr3	30636946	30637046	1433396	0	+	0.63	(0.58,1]	chr3	153006	37	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4:ENST00000673250.1:ENST00000672866.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	145	2	3.29081	3.58474	3.87867	0.00797934	0.00191512	0.0596361	0.0223591
chr6	161069432	161069529	3069173	0	+	0.597938	(0.58,1]	chr6	298394	18	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.87471	3.584625	4.29454	0.0495478	0.0305531	0.146562	0.126768
chr10	47532681	47532781	4680509	0	-	0.41	(0.39,0.419]	chr10	446443	88	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	4	184	2	3.39881	3.583885	3.76896	0.0168258	0.00254077	0.0885	0.0271978
chr6	143270721	143270821	3015538	0	+	0.32	(0.29,0.33]	chr6	294885	803	INTRON	INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000275235.8:ENST00000458219.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.65466	3.583835	4.51301	0.0885563	0.0498776	0.183874	0.161215
chr2	3299293	3299393	1081100	0	-	0.67	(0.58,1]	chr2	117633	166	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	67	2	2.50339	3.583775	4.66416	0.0468259	0.0144381	0.143232	0.0833845
chr10	75726248	75726348	4523426	0	+	0.46	(0.45,0.485]	chr10	432271	783	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	145	2	3.44977	3.5836449999999997	3.71752	0.0255605	0.0016671	0.109062	0.0203328
chr20	381500	381600	7414314	0	+	0.69	(0.58,1]	chr20	772272	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TRIB3	ENSG00000101255.12	ENST00000615226.4:ENST00000217233.9:ENST00000449710.5:ENST00000422053.3	protein_coding	protein_coding	protein_coding	protein_coding	6	184	2	2.94987	3.58362	4.21737	0.00398024	0.00260858	0.040832	0.0278319
chr16	89426359	89426459	6661097	0	-	0.64	(0.58,1]	chr16	666747	76	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	184	2	2.88761	3.5835850000000002	4.27956	0.00349053	0.00313188	0.0379065	0.0312116
chr11	377527	377627	4784075	0	+	0.67	(0.58,1]	chr11	457780	2	SS5_PROX	SS5_PROX:INTRON	B4GALNT4	ENSG00000182272.12	ENST00000329962.11	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.47204	3.58357	4.6951	0.0623526	0.0521567	0.181127	0.148503
chr16	914573	914672	6531169	0	-	0.585859	(0.58,1]	chr16	648677	31	INTRON	INTRON	LMF1	ENSG00000103227.19	ENST00000262301.16:ENST00000545827.6:ENST00000543238.5:ENST00000568897.5:ENST00000566627.5:ENST00000570014.5:ENST00000562226.5:ENST00000568964.5:ENST00000562380.5:ENST00000567595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.47204	3.58357	4.6951	0.0623526	0.0521567	0.181127	0.148503
chr2	235514531	235514631	1062741	0	+	0.6	(0.58,1]	chr2	115651	193	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.47204	3.58357	4.6951	0.0623526	0.0521567	0.181127	0.148503
chr7	2049310	2049410	3530725	0	-	0.72	(0.58,1]	chr7	340995	343	INTRON	INTRON	MAD1L1	ENSG00000002822.16	ENST00000406869.5:ENST00000399654.6:ENST00000402746.5:ENST00000265854.12:ENST00000438959.5:ENST00000444373.6:ENST00000421113.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.47204	3.58357	4.6951	0.0623526	0.0521567	0.181127	0.148503
chr9	81584909	81585004	4321883	0	-	0.421053	(0.419,0.45]	chr9	412926	4	SS3_PROX	SS3_PROX:INTRON	TLE1	ENSG00000196781.16	ENST00000376499.8	protein_coding	protein_coding	protein_coding	protein_coding	2	122	2	3.4957	3.5835150000000002	3.67133	0.021076	0.0102234	0.0996078	0.0678072
chr11	70738887	70738986	5061670	0	-	0.636364	(0.58,1]	chr11	492701	210	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	58	2	1.85952	3.583495	5.30747	0.0671431	0.0196049	0.192171	0.0955413
chr2	239337691	239337791	1392087	0	-	0.6	(0.58,1]	chr2	148752	132	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	58	2	1.85952	3.583495	5.30747	0.0671431	0.0196049	0.192171	0.0955413
chr20	25494881	25494980	7539902	0	-	0.616162	(0.58,1]	chr20	787018	30	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5:ENST00000461642.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	58	2	1.85952	3.583495	5.30747	0.0671431	0.0196049	0.192171	0.0955413
chr10	18557067	18557167	4642299	0	-	0.42	(0.419,0.45]	chr10	443321	47	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	62	2	2.97363	3.58289	4.19215	0.0617113	0.0596114	0.18013	0.157889
chr16	81543082	81543182	6508724	0	+	0.59	(0.58,1]	chr16	645911	472	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	91	2	3.40767	3.5825	3.75733	0.0197265	0.0033279	0.0958249	0.0325742
chr7	94929407	94929507	3419003	0	+	0.39	(0.36,0.39]	chr7	330364	175	INTRON	INTRON	PPP1R9A	ENSG00000158528.12	ENST00000433360.6:ENST00000340694.8:ENST00000424654.5:ENST00000433881.5:ENST00000456331.6:ENST00000289495.7	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.33887	3.582295	4.82572	0.0751666	0.0459241	0.172839	0.154743
chr17	30394611	30394711	6710953	0	+	0.43	(0.419,0.45]	chr17	673915	90	INTRON	INTRON	CPD	ENSG00000108582.12	ENST00000225719.9:ENST00000543464.6	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.3476	3.5821549999999998	4.81671	0.08258	0.0461739	0.179396	0.155334
chr5	859361	859460	2607948	0	-	0.444444	(0.419,0.45]	chr5	259417	84	INTRON	INTRON	BRD9	ENSG00000028310.18	ENST00000493082.5	protein_coding	retained_intron	protein_coding	retained_intron	2	59	2	2.54153	3.58213	4.62273	0.103601	0.0316792	0.197541	0.128518
chr20	38428067	38428164	7561108	0	-	0.391753	(0.39,0.419]	chr20	789772	5	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000423536.6:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	67	2	1.96828	3.582035	5.19579	0.0640398	0.0469937	0.184676	0.143232
chr1	1062678	1062778	1363	0	+	0.62	(0.58,1]	chr1	307	2	SS3_PROX	SS3_PROX:INTRON	ENSG00000217801	ENSG00000217801.11	ENST00000688131.1:ENST00000456409.6:ENST00000692821.1:ENST00000394517.7:ENST00000427998.6:ENST00000685011.1:ENST00000692266.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	48	2	2.21459	3.5817050000000004	4.94882	0.0487458	0.0354433	0.160725	0.127188
chr11	14301930	14302030	4998865	0	-	0.33	(0.29,0.33]	chr11	483716	57	INTRON	INTRON	RRAS2	ENSG00000133818.14	ENST00000256196.9:ENST00000537760.5:ENST00000529237.5:ENST00000534746.5:ENST00000526063.5:ENST00000532814.5:ENST00000531807.5:ENST00000532950.5:ENST00000531421.5:ENST00000526717.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	56	2	2.64994	3.581475	4.51301	0.0885563	0.0224122	0.183874	0.108193
chr2	11589231	11589331	720775	0	+	0.45	(0.419,0.45]	chr2	84162	3	SS5_PROX	SS5_PROX:INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000381483.6:ENST00000234142.9:ENST00000432985.1	protein_coding	protein_coding	protein_coding	protein_coding	3	156	2	3.54602	3.5814	3.61678	0.0229694	0.00324433	0.102982	0.0319647
chr2	206010094	206010194	1362777	0	-	0.4	(0.39,0.419]	chr2	145004	3	SS3_PROX	SS3_PROX:INTRON	INO80D	ENSG00000114933.16	ENST00000403263.6:ENST00000424117.5	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.76623	3.581225	4.39622	0.0762396	0.042449	0.174496	0.149195
chrX	133748489	133748589	8113650	0	-	0.41	(0.39,0.419]	chrX	845516	439	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000684880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	212	2	2.90521	3.5812099999999996	4.25721	0.0343712	4.56984e-4	0.125842	0.00821903
chr16	8856692	8856788	6546164	0	-	0.53125	(0.523,0.58]	chr16	651451	10	INTRON	INTRON	CARHSP1	ENSG00000153048.11	ENST00000396593.6:ENST00000611932.4:ENST00000618335.4:ENST00000619881.4:ENST00000610831.4:ENST00000614449.4:ENST00000311052.10:ENST00000561530.5:ENST00000567554.5:ENST00000565287.5:ENST00000567908.5:ENST00000570125.5:ENST00000568117.5:ENST00000568968.1	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.14543	3.5811	5.01677	0.0609283	0.0482765	0.179956	0.144601
chr17	82004843	82004942	6815345	0	+	0.626263	(0.58,1]	chr17	688641	6	EXON_MRNA	EXON_MRNA:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	205	2	3.04215	3.5809800000000003	4.11981	0.0177015	1.39696e-4	0.0910644	0.00349491
chr7	2763056	2763140	3534273	0	-	0.547619	(0.523,0.58]	chr7	341308	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	GNA12	ENSG00000146535.14	ENST00000275364.8:ENST00000407904.7:ENST00000491117.5:ENST00000407653.1:ENST00000496740.6:ENST00000471281.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	111	2	3.4003	3.580685	3.76107	0.0141879	0.0103016	0.0816012	0.0678983
chr12	76068408	76068492	5455900	0	-	0.345238	(0.33,0.36]	chr12	536729	1	SS5_PROX	SS5_PROX:INTRON	NAP1L1	ENSG00000187109.15	ENST00000618691.5:ENST00000552056.5:ENST00000393263.7:ENST00000431879.7:ENST00000547773.5:ENST00000544816.5:ENST00000542344.5:ENST00000535020.6:ENST00000549596.5:ENST00000552342.5:ENST00000548044.5:ENST00000550934.5:ENST00000551992.5:ENST00000548273.5:ENST00000551600.5:ENST00000547704.5:ENST00000549988.5:ENST00000547479.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	148	2	3.43786	3.5803000000000003	3.72274	0.0264583	0.00179798	0.111024	0.0214722
chr10	75479905	75480005	4520957	0	+	0.51	(0.485,0.523]	chr10	432249	283	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	1.94261	3.58015	5.21769	0.062577	0.0359739	0.181719	0.127853
chr19	40273645	40273745	7379711	0	-	0.58	(0.523,0.58]	chr19	765692	30	INTRON	INTRON	AKT2	ENSG00000105221.18	ENST00000392038.7:ENST00000424901.5:ENST00000391844.8:ENST00000584288.5:ENST00000579047.5:ENST00000537834.5:ENST00000487537.3:ENST00000486368.6:ENST00000596634.5:ENST00000452077.5:ENST00000578123.5:ENST00000672890.1:ENST00000423127.5:ENST00000358335.9:ENST00000456441.5:ENST00000583859.5:ENST00000416994.6:ENST00000498350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	52	2	2.09041	3.5799899999999996	5.06957	0.0674148	0.0448011	0.192827	0.140478
chr4	708762	708861	1993715	0	+	0.575758	(0.523,0.58]	chr4	203088	24	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	52	2	2.09041	3.5799899999999996	5.06957	0.0674148	0.0448011	0.192827	0.140478
chr7	139701147	139701247	3723157	0	-	0.53	(0.523,0.58]	chr7	357498	691	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.09041	3.5799899999999996	5.06957	0.0674148	0.0448011	0.192827	0.140478
chr6	158328867	158328967	3061810	0	+	0.42	(0.419,0.45]	chr6	297592	142	INTRON	INTRON	ENSG00000274023:TULP4	ENSG00000274023.1:ENSG00000130338.13	ENST00000619713.1:ENST00000367097.8:ENST00000367094.6:ENST00000616856.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	2	56	2	2.17119	3.57943	4.98767	0.0669167	0.0637569	0.184651	0.16272
chr16	85384438	85384538	6516915	0	+	0.56	(0.523,0.58]	chr16	646391	251	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	55	2	2.918	3.578865	4.23973	0.0558053	0.0444247	0.154188	0.153511
chr2	200977393	200977493	1355600	0	-	0.35	(0.33,0.36]	chr2	144097	38	UTR3	UTR3:EXON_MRNA	FAM126B	ENSG00000155744.10	ENST00000681958.1:ENST00000418596.7	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.58715	3.5787500000000003	4.57035	0.0945416	0.0587055	0.188571	0.176098
chrX	9526292	9526392	7843058	0	+	0.36	(0.33,0.36]	chrX	822404	241	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.58715	3.5787500000000003	4.57035	0.0945416	0.0587055	0.188571	0.176098
chr10	112192251	112192351	4760709	0	-	0.46	(0.45,0.485]	chr10	455255	86	INTRON	INTRON	GPAM	ENSG00000119927.14	ENST00000480130.5:ENST00000498541.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	57	2	2.65944	3.57865	4.49786	0.101311	0.022472	0.196131	0.108193
chr11	112253880	112253980	4942403	0	+	0.39	(0.36,0.39]	chr11	476600	160	INTRON	INTRON	PTS	ENSG00000150787.8	ENST00000531673.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	2	55	2	2.10753	3.5785099999999996	5.04949	0.0700776	0.0563927	0.195259	0.154188
chr9	124488885	124488985	4402611	0	-	0.58	(0.523,0.58]	chr9	419805	55	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.43762	3.57842	4.71922	0.0721601	0.0343548	0.168159	0.134666
chr7	47367266	47367366	3587464	0	-	0.62	(0.58,1]	chr7	346030	206	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	3	127	2	3.03776	3.5782550000000004	4.11875	0.00720487	0.00489075	0.0543254	0.0457614
chr19	933840	933940	7185184	0	+	0.68	(0.58,1]	chr19	730741	7	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	80	2	2.19749	3.577815	4.95814	0.0567957	0.0074469	0.154343	0.0553519
chr19	2333703	2333802	7189456	0	+	0.656566	(0.58,1]	chr19	731774	29	INTRON	INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	2.32693	3.57723	4.82753	0.0427798	0.038688	0.142489	0.13762
chr1	33034217	33034317	440116	0	-	0.36	(0.33,0.36]	chr1	52532	25	UTR3	UTR3:EXON_MRNA:INTRON	AK2	ENSG00000004455.18	ENST00000373449.7:ENST00000672715.1:ENST00000550338.6:ENST00000695599.1:ENST00000354858.11:ENST00000695600.1:ENST00000695601.1:ENST00000491241.2:ENST00000695602.1:ENST00000469238.2:ENST00000695603.1:ENST00000695604.1:ENST00000672308.1:ENST00000548033.5:ENST00000467905.5:ENST00000480134.5:ENST00000695605.1:ENST00000673291.1:ENST00000487289.1:ENST00000548559.1:ENST00000551979.1:ENST00000695606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	2.09481	3.5770049999999998	5.0592	0.0702974	0.0504445	0.195709	0.148216
chr17	58090670	58090770	6764171	0	+	0.55	(0.523,0.58]	chr17	682242	15	UTR3	UTR3:EXON_MRNA	DYNLL2	ENSG00000264364.3	ENST00000579991.3	protein_coding	protein_coding	protein_coding	protein_coding	5	196	2	2.2016	3.57673	4.95186	0.0570539	1.5208e-4	0.154343	0.00371617
chr17	38728296	38728396	6729366	0	+	0.53	(0.523,0.58]	chr17	676371	28	UTR3	UTR3:EXON_MRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5	protein_coding	protein_coding	protein_coding	protein_coding	18	743	2	3.50295	3.57653	3.65011	0.00320156	3.13267e-4	0.0361639	0.00626799
chr11	57498875	57498963	5038760	0	-	0.579545	(0.523,0.58]	chr11	488203	7	INTRON	INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000533515.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	138	2	3.56966	3.57549	3.58132	0.0193579	0.00224097	0.0954964	0.024843
chr14	69981454	69981553	5872189	0	+	0.59596	(0.58,1]	chr14	573328	31	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	2	95	2	3.44157	3.57491	3.70825	0.0111705	0.00760198	0.0716525	0.0561937
chr1	2240034	2240134	4611	0	+	0.51	(0.485,0.523]	chr1	1048	70	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.1863	3.574345	4.96239	0.0567965	0.0518747	0.172995	0.148503
chr21	44873124	44873216	7678574	0	-	0.706522	(0.58,1]	chr21	802777	2	SS5_PROX	SS5_PROX:INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	189	2	2.1424	3.5739549999999998	5.00551	0.0374477	7.04076e-4	0.139793	0.0156243
chr2	62894463	62894563	815855	0	+	0.42	(0.419,0.45]	chr2	92141	128	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding	9	383	2	3.12258	3.5738250000000003	4.02507	0.00565405	0.00225809	0.0495671	0.0250238
chr2	19975763	19975863	1096194	0	-	0.34	(0.33,0.36]	chr2	119510	1	SS3_PROX	SS3_PROX:INTRON	WDR35	ENSG00000118965.16	ENST00000281405.9:ENST00000345530.8:ENST00000414212.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	2.57664	3.5734950000000003	4.57035	0.0945416	0.0278327	0.188571	0.120995
chr11	71485043	71485143	4887713	0	+	0.62	(0.58,1]	chr11	471504	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NADSYN1	ENSG00000172890.13	ENST00000319023.7:ENST00000525200.5:ENST00000529840.5:ENST00000530055.5:ENST00000526039.6:ENST00000531236.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.38295	3.572895	4.76284	0.0730701	0.0471737	0.199669	0.143232
chr16	87742202	87742297	6656504	0	-	0.621053	(0.58,1]	chr16	665896	14	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.38295	3.572895	4.76284	0.0730701	0.0471737	0.199669	0.143232
chr17	77482434	77482534	6805206	0	+	0.62	(0.58,1]	chr17	686820	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	36	2	2.38295	3.572895	4.76284	0.0730701	0.0471737	0.199669	0.143232
chr19	46977092	46977192	7275344	0	+	0.61	(0.58,1]	chr19	747275	393	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	36	2	2.38295	3.572895	4.76284	0.0730701	0.0471737	0.199669	0.143232
chr2	235592122	235592222	1063519	0	+	0.68	(0.58,1]	chr2	115656	672	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.38295	3.572895	4.76284	0.0730701	0.0471737	0.199669	0.143232
chr6	128303354	128303453	3254996	0	-	0.474747	(0.45,0.485]	chr6	315203	604	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000531050.5:ENST00000524534.5:ENST00000490332.2:ENST00000495748.5:ENST00000429595.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	53	2	2.19184	3.57282	4.9538	0.0575893	0.0569772	0.17499	0.154343
chr1	17597343	17597443	54153	0	+	0.69	(0.58,1]	chr1	5465	85	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.40217	3.572815	4.74346	0.100879	0.0121457	0.196131	0.0754623
chr11	70801339	70801438	5062296	0	-	0.59596	(0.58,1]	chr11	492707	24	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5:ENST00000460048.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.40217	3.572815	4.74346	0.100879	0.0121457	0.196131	0.0754623
chr7	1068286	1068386	3526910	0	-	0.61	(0.58,1]	chr7	340585	131	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	43	2	2.40217	3.572815	4.74346	0.100879	0.0121457	0.196131	0.0754623
chr22	42985736	42985836	7823990	0	-	0.52	(0.485,0.523]	chr22	820626	260	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.42548	3.57256	4.71964	0.0718646	0.0355127	0.168159	0.137983
chr6	138437490	138437590	3273513	0	-	0.34	(0.33,0.36]	chr6	316891	18	INTRON	INTRON	NHSL1	ENSG00000135540.12	ENST00000427025.6:ENST00000343505.10:ENST00000342260.9	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.64926	3.57249	4.49572	0.103264	0.0238991	0.197541	0.111785
chr1	17683375	17683475	55045	0	+	0.68	(0.58,1]	chr1	5603	184	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	2.74846	3.57233	4.3962	0.0605281	0.0250928	0.158506	0.114418
chr18	76402481	76402581	7179144	0	-	0.63	(0.58,1]	chr18	730080	218	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.74846	3.57233	4.3962	0.0605281	0.0250928	0.158506	0.114418
chr19	2203573	2203672	7188894	0	+	0.575758	(0.523,0.58]	chr19	731581	4	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.6197	3.5723	4.5249	0.0853454	0.0266135	0.181766	0.118113
chr19	942618	942718	7185272	0	+	0.71	(0.58,1]	chr19	730741	95	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	283	2	2.58816	3.5722249999999995	4.55629	0.00730432	6.99509e-4	0.0550523	0.0156107
chr16	89915168	89915240	6526329	0	+	0.486111	(0.485,0.523]	chr16	647718	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ENSG00000267048:MC1R	ENSG00000267048.1:ENSG00000258839.4	ENST00000570217.1:ENST00000555427.1:ENST00000639847.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	2	116	2	2.49197	3.5718749999999995	4.65178	0.10114	3.84341e-4	0.196131	0.00726694
chr13	98260001	98260101	5634831	0	+	0.4	(0.39,0.419]	chr13	553480	148	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	4	203	2	2.55645	3.571865	4.58728	0.019458	0.00406902	0.099646	0.0413652
chr22	32802721	32802821	7717636	0	+	0.54	(0.523,0.58]	chr22	807776	2	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.53438	3.57153	4.60868	0.0957531	0.0226775	0.189038	0.108193
chr21	8809369	8809469	7637409	0	-	0.57	(0.523,0.58]	chr21	798930	18	INTRON	INTRON	ENSG00000286033	ENSG00000286033.1	ENST00000651312.1	lncRNA	lncRNA	lncRNA	lncRNA	2	108	2	3.47888	3.5714300000000003	3.66398	0.0167995	0.00856566	0.0884836	0.0612
chr21	45455321	45455421	7630816	0	+	0.61	(0.58,1]	chr21	797656	495	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.02776	3.570655	5.11355	0.0700362	0.0271806	0.195209	0.112113
chr19	941022	941122	7185256	0	+	0.83	(0.58,1]	chr19	730741	79	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	126	2	3.15491	3.570605	3.9863	0.0142368	0.0017591	0.0817691	0.0211077
chr2	65384583	65384683	1171701	0	-	0.63	(0.58,1]	chr2	127582	40	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.56085	3.57055	4.58025	0.0803939	0.0172566	0.177452	0.0923809
chr9	133859077	133859177	4428989	0	-	0.68	(0.58,1]	chr9	423304	244	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.56085	3.57055	4.58025	0.0803939	0.0172566	0.177452	0.0923809
chr9	133973189	133973289	4430137	0	-	0.65	(0.58,1]	chr9	423331	336	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.56085	3.57055	4.58025	0.0803939	0.0172566	0.177452	0.0923809
chr21	45499448	45499547	7631299	0	+	0.666667	(0.58,1]	chr21	797812	14	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	2	98	2	3.30273	3.570325	3.83792	0.0107069	0.00865536	0.0700635	0.0623824
chr7	47528435	47528535	3589097	0	-	0.61	(0.58,1]	chr7	346138	211	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	3	127	2	3.00436	3.57001	4.13566	0.00785951	0.00472191	0.0576181	0.0449204
chr13	52156091	52156191	5717447	0	-	0.47	(0.45,0.485]	chr13	561078	1	CDS_START	CDS_START:CDS:EXON_MRNA	NEK3	ENSG00000136098.17	ENST00000620675.4:ENST00000611833.4:ENST00000618534.4:ENST00000610828.5:ENST00000617054.1:ENST00000551355.5:ENST00000552973.1:ENST00000629912.1:ENST00000550841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	106	2	3.20396	3.56967	3.93538	0.0377633	0.00301535	0.131324	0.0305643
chr16	16158109	16158209	6556436	0	-	0.49	(0.485,0.523]	chr16	653065	3	SS3_PROX	SS3_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	259	2	3.43297	3.569305	3.70564	0.00712801	0.00121574	0.0560706	0.0162693
chr1	232959720	232959819	363625	0	+	0.292929	(0.29,0.33]	chr1	41081	29	INTRON	INTRON	NTPCR	ENSG00000135778.12	ENST00000494689.5:ENST00000366628.10:ENST00000490807.5:ENST00000496662.5:ENST00000366627.4:ENST00000479125.5:ENST00000487953.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.05996	3.56836	5.07676	0.0722239	0.0412683	0.199502	0.136301
chr1	43561814	43561914	107057	0	+	0.58	(0.523,0.58]	chr1	13192	75	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	146	2	3.17429	3.56806	3.96183	0.0188133	0.00255427	0.0939295	0.0273114
chr17	38746167	38746267	6895637	0	-	0.48	(0.45,0.485]	chr17	700402	3	SS5_PROX	SS5_PROX:INTRON	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000611883.4:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	3	145	2	2.68615	3.567775	4.4494	0.0445958	7.63833e-4	0.140478	0.0117723
chr3	30629659	30629759	1433323	0	+	0.41	(0.39,0.419]	chr3	153002	60	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4:ENST00000673250.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	82	2	2.19485	3.5677250000000003	4.9406	0.0658437	0.0324537	0.162385	0.130572
chr17	29116555	29116655	6876314	0	-	0.48	(0.45,0.485]	chr17	697937	1	SS3_PROX	SS3_PROX:INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000588791.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	150	2	3.04016	3.56757	4.09498	0.00944306	0.00845957	0.0650078	0.0617717
chr2	108587420	108587519	871482	0	+	0.50505	(0.485,0.523]	chr2	98292	67	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1:ENST00000695519.1	protein_coding	protein_coding	protein_coding	protein_coding	2	103	2	3.32827	3.56756	3.80685	0.0294165	0.00388927	0.116079	0.0363508
chr22	32802821	32802921	7717637	0	+	0.46	(0.45,0.485]	chr22	807776	3	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	2	123	2	3.12941	3.567485	4.00556	0.0199365	0.00992252	0.100864	0.0671959
chr8	70145048	70145148	3992652	0	-	0.29	[0,0.29]	chr8	382173	2	SS3_PROX	SS3_PROX:INTRON	NCOA2	ENSG00000140396.13	ENST00000452400.7:ENST00000518287.6:ENST00000518363.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	2.44641	3.56748	4.68855	0.0554735	0.0325321	0.154188	0.130831
chr11	72823349	72823446	4889578	0	+	0.474227	(0.45,0.485]	chr11	471904	5	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ATG16L2	ENSG00000168010.11	ENST00000534905.5:ENST00000321297.10:ENST00000435507.6:ENST00000439504.6:ENST00000542908.5:ENST00000544490.5:ENST00000536995.5:ENST00000537212.1:ENST00000541999.5:ENST00000535830.5:ENST00000541367.5:ENST00000538973.5:ENST00000540222.5:ENST00000537837.5:ENST00000541554.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	39	2	2.5616	3.56705	4.5725	0.0926859	0.0598406	0.188571	0.177269
chr2	11516797	11516897	720029	0	+	0.48	(0.45,0.485]	chr2	84084	341	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000628795.2	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.5616	3.56705	4.5725	0.0926859	0.0598406	0.188571	0.177269
chr2	20220405	20220504	1096957	0	-	0.474747	(0.45,0.485]	chr2	119640	146	INTRON	INTRON	SDC1	ENSG00000115884.11	ENST00000254351.9:ENST00000381150.5:ENST00000403076.5:ENST00000429035.1:ENST00000482879.5:ENST00000447124.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.5616	3.56705	4.5725	0.0926859	0.0598406	0.188571	0.177269
chr2	72680919	72681019	1186749	0	-	0.46	(0.45,0.485]	chr2	128741	1049	INTRON	INTRON	EXOC6B	ENSG00000144036.16	ENST00000272427.11:ENST00000634650.1:ENST00000410104.1:ENST00000410112.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.5616	3.56705	4.5725	0.0926859	0.0598406	0.188571	0.177269
chr6	12047334	12047434	2854492	0	+	0.47	(0.45,0.485]	chr6	278961	82	INTRON	INTRON	HIVEP1	ENSG00000095951.17	ENST00000491710.5:ENST00000487103.5:ENST00000379388.7:ENST00000627968.2:ENST00000541134.5:ENST00000442081.6:ENST00000478545.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.5616	3.56705	4.5725	0.0926859	0.0598406	0.188571	0.177269
chr4	17628449	17628548	2017162	0	+	0.474747	(0.45,0.485]	chr4	206143	29	UTR3	UTR3:EXON_MRNA	MED28	ENSG00000118579.13	ENST00000237380.12	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.49029	3.566875	4.64346	0.0850039	0.0676934	0.193219	0.181766
chr4	23868235	23868334	2209394	0	-	0.454545	(0.45,0.485]	chr4	223321	16	INTRON	INTRON	PPARGC1A	ENSG00000109819.9	ENST00000509702.5:ENST00000264867.7:ENST00000613098.4:ENST00000506055.5:ENST00000513205.5:ENST00000509642.5:ENST00000617484.4:ENST00000612355.1:ENST00000508380.1:ENST00000512169.1:ENST00000507342.5:ENST00000515534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	39	2	2.49029	3.566875	4.64346	0.0850039	0.0676934	0.193219	0.181766
chr8	38772589	38772689	3802281	0	+	0.47	(0.45,0.485]	chr8	365828	148	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.49029	3.566875	4.64346	0.0850039	0.0676934	0.193219	0.181766
chrX	52974858	52974958	8043662	0	-	0.46	(0.45,0.485]	chrX	839375	85	INTRON	INTRON	FAM156A	ENSG00000268350.8	ENST00000611661.4:ENST00000622732.5:ENST00000622323.5:ENST00000612083.5:ENST00000610625.5:ENST00000612915.4:ENST00000615092.4:ENST00000623782.3:ENST00000616592.1:ENST00000619897.4:ENST00000615171.1:ENST00000622430.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	56	2	2.90749	3.565505	4.22352	0.0588897	0.0496712	0.160725	0.15607
chr20	62887408	62887506	7585183	0	-	0.418367	(0.39,0.419]	chr20	792848	3	UTR3	UTR3:EXON_MRNA:INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5	protein_coding	protein_coding	protein_coding	protein_coding	2	112	2	3.32988	3.565135	3.80039	0.0338241	0.00484195	0.124319	0.0418176
chr2	21018491	21018591	1100617	0	-	0.52	(0.485,0.523]	chr2	119971	1	SS5_PROX	SS5_PROX:INTRON	APOB	ENSG00000084674.15	ENST00000233242.5:ENST00000673739.1:ENST00000673882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	129	2	1.61704	3.56497	5.5129	0.0536086	0.0229047	0.167657	0.102982
chr6	26877621	26877721	3112310	0	-	0.38	(0.36,0.39]	chr6	301874	50	INTRON	INTRON	GUSBP2	ENSG00000241549.8	ENST00000479900.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	153	2	2.61578	3.5649	4.51402	0.0530576	7.79455e-4	0.149442	0.0119255
chr3	30637446	30637546	1433401	0	+	0.54	(0.523,0.58]	chr3	153006	42	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4:ENST00000673250.1:ENST00000672866.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	279	2	2.62233	3.564565	4.5068	0.00510509	0.0035839	0.0433985	0.0384108
chr20	38429526	38429624	7561123	0	-	0.55102	(0.523,0.58]	chr20	789773	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000423536.6:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	72	2	1.91177	3.56452	5.21727	0.0524626	0.0361597	0.167062	0.127853
chr16	66604205	66604293	6469317	0	+	0.715909	(0.58,1]	chr16	641973	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CMTM3	ENSG00000140931.20	ENST00000563672.5:ENST00000424011.6:ENST00000562357.5:ENST00000562707.5:ENST00000361909.8	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.83384	3.56419	4.29454	0.0529065	0.0305531	0.14912	0.126768
chr19	56821450	56821550	7410520	0	-	0.61	(0.58,1]	chr19	771613	4	SS5_PROX	SS5_PROX:INTRON	ZIM2:PEG3	ENSG00000269699.7:ENSG00000198300.14	ENST00000593711.6:ENST00000689654.1:ENST00000629319.3:ENST00000599935.5:ENST00000595671.5:ENST00000597281.5:ENST00000601070.5:ENST00000693159.1:ENST00000650111.1:ENST00000648694.1:ENST00000326441.15:ENST00000649233.1:ENST00000649680.1:ENST00000649876.1:ENST00000649428.1:ENST00000650632.1:ENST00000650102.1:ENST00000649735.1:ENST00000647621.1:ENST00000598410.5:ENST00000593695.5:ENST00000599577.5:ENST00000599534.5:ENST00000647852.1:ENST00000600833.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.83384	3.56419	4.29454	0.0529065	0.0305531	0.14912	0.126768
chr11	68351808	68351907	4882476	0	+	0.606061	(0.58,1]	chr11	470548	32	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	95	2	3.39676	3.563725	3.73069	0.0106925	0.0085026	0.0701355	0.0608246
chr11	70745681	70745781	5061738	0	-	0.68	(0.58,1]	chr11	492701	278	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	95	2	3.39676	3.563725	3.73069	0.0106925	0.0085026	0.0701355	0.0608246
chr16	56776977	56777076	6463821	0	+	0.474747	(0.45,0.485]	chr16	640945	180	INTRON	INTRON	NUP93	ENSG00000102900.13	ENST00000563858.5:ENST00000308159.10:ENST00000566315.5:ENST00000569842.5:ENST00000569863.5:ENST00000562496.5:ENST00000568656.5:ENST00000566678.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.62955	3.563705	4.49786	0.101311	0.0530416	0.196131	0.167062
chr13	75392090	75392190	5727105	0	-	0.24	[0,0.29]	chr13	561722	149	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.43841	3.56348	4.68855	0.0701324	0.0554735	0.195286	0.154188
chr1	43594483	43594581	107395	0	+	0.581633	(0.58,1]	chr1	13240	15	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	3	119	2	3.48788	3.563325	3.63877	0.0127766	0.00208277	0.0769397	0.0237357
chr12	132793070	132793169	5540392	0	-	0.707071	(0.58,1]	chr12	546816	14	INTRON	INTRON	GOLGA3	ENSG00000090615.16	ENST00000204726.9:ENST00000450791.8:ENST00000693666.1:ENST00000688114.1:ENST00000687190.1:ENST00000690511.1:ENST00000685283.1:ENST00000691696.1:ENST00000691636.1:ENST00000690897.1:ENST00000690465.1:ENST00000456883.7:ENST00000692253.1:ENST00000687502.1:ENST00000688772.1:ENST00000687479.1:ENST00000690709.1:ENST00000545875.4:ENST00000688251.1:ENST00000690573.1:ENST00000685195.1:ENST00000686425.1:ENST00000693437.1:ENST00000692831.1:ENST00000688068.1:ENST00000692951.1:ENST00000689441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	240	2	3.49308	3.563075	3.63307	0.0046356	6.75388e-4	0.0443883	0.010811
chr20	4857504	4857604	7517116	0	-	0.47	(0.45,0.485]	chr20	784813	3	SS3_PROX	SS3_PROX:INTRON	SLC23A2	ENSG00000089057.15	ENST00000379333.5:ENST00000338244.6	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.61676	3.56264	4.50852	0.0883035	0.0302873	0.183874	0.126768
chr17	58090372	58090471	6764168	0	+	0.50505	(0.485,0.523]	chr17	682242	12	UTR3	UTR3:EXON_MRNA	DYNLL2	ENSG00000264364.3	ENST00000579991.3	protein_coding	protein_coding	protein_coding	protein_coding	4	165	2	3.28842	3.5624700000000002	3.83652	0.0123744	0.00268186	0.0759278	0.0282423
chr12	49373485	49373585	5225228	0	+	0.54	(0.523,0.58]	chr12	507159	18	INTRON	INTRON	SPATS2	ENSG00000123352.18	ENST00000550997.5:ENST00000549538.5:ENST00000549412.5:ENST00000550643.5:ENST00000548654.5:ENST00000548710.5:ENST00000549179.5:ENST00000548377.5:ENST00000549298.5:ENST00000552918.6:ENST00000549375.5:ENST00000553127.5:ENST00000321898.10:ENST00000551540.5:ENST00000548777.5:ENST00000552171.1:ENST00000547865.5:ENST00000548388.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.54344	3.56201	4.58058	0.0860403	0.0599121	0.181766	0.177269
chr14	104870755	104870855	5925919	0	+	0.59	(0.58,1]	chr14	579942	18	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	2	100	2	2.50987	3.5619300000000003	4.61399	0.0865901	2.64819e-4	0.182221	0.00556151
chr7	105857093	105857193	3671494	0	-	0.45	(0.419,0.45]	chr7	353956	680	INTRON	INTRON	ATXN7L1	ENSG00000146776.15	ENST00000419735.8:ENST00000318724.8:ENST00000478915.1:ENST00000481880.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	78	2	1.88782	3.5609450000000002	5.23407	0.0611405	0.0486006	0.18013	0.145074
chr3	171786967	171787067	1958326	0	-	0.37	(0.36,0.39]	chr3	199081	157	INTRON	INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9:ENST00000498278.5:ENST00000440204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	150	2	3.47116	3.56065	3.65014	0.0269033	0.00234193	0.112113	0.025771
chr6	158255983	158256083	3061075	0	+	0.38	(0.36,0.39]	chr6	297572	233	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	55	2	2.29548	3.5606	4.82572	0.0751666	0.049843	0.172839	0.161215
chr16	570547	570647	6368119	0	+	0.59	(0.58,1]	chr16	627946	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PIGQ	ENSG00000007541.17	ENST00000293874.2:ENST00000409527.6:ENST00000321878.10:ENST00000439574.1:ENST00000422307.6:ENST00000636657.1:ENST00000026218.9:ENST00000470411.2:ENST00000637701.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	43	2	2.45703	3.560595	4.66416	0.0933945	0.0144381	0.188571	0.0833845
chr1	1063078	1063139	1367	0	+	0.57377	(0.523,0.58]	chr1	309	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:INTRON	ENSG00000217801	ENSG00000217801.11	ENST00000688131.1:ENST00000456409.6:ENST00000692821.1:ENST00000394517.7:ENST00000427998.6:ENST00000685011.1:ENST00000692266.1:ENST00000412397.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	1	38	2	2.61478	3.5603550000000004	4.50593	0.094303	0.052707	0.188571	0.167062
chr10	35397674	35397773	4476286	0	+	0.525253	(0.523,0.58]	chr10	428113	24	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.61478	3.5603550000000004	4.50593	0.094303	0.052707	0.188571	0.167062
chr7	27116032	27116131	3559822	0	-	0.565657	(0.523,0.58]	chr7	343721	23	INTRON	INTRON	HOXA3	ENSG00000105997.23	ENST00000396352.8:ENST00000612286.5:ENST00000317201.7:ENST00000522788.5:ENST00000521401.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.61478	3.5603550000000004	4.50593	0.094303	0.052707	0.188571	0.167062
chr10	103690432	103690532	4757000	0	-	0.58	(0.523,0.58]	chr10	454779	124	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.46839	3.5599800000000004	4.65157	0.0787008	0.0683019	0.193274	0.175203
chr11	134240655	134240753	4967118	0	+	0.571429	(0.523,0.58]	chr11	480169	1	INTRON	INTRON	VPS26B	ENSG00000151502.11	ENST00000281187.10:ENST00000525095.2:ENST00000527586.1:ENST00000530402.1:ENST00000525918.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	38	2	2.46839	3.5599800000000004	4.65157	0.0787008	0.0683019	0.193274	0.175203
chr16	87918959	87919059	6657555	0	-	0.56	(0.523,0.58]	chr16	666059	137	INTRON	INTRON	CA5A	ENSG00000174990.8	ENST00000649158.1:ENST00000648177.1:ENST00000649794.3:ENST00000648022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.46839	3.5599800000000004	4.65157	0.0787008	0.0683019	0.193274	0.175203
chr17	77371489	77371589	6804074	0	+	0.56	(0.523,0.58]	chr17	686742	473	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	38	2	2.46839	3.5599800000000004	4.65157	0.0787008	0.0683019	0.193274	0.175203
chr20	58446921	58447021	7498129	0	+	0.55	(0.523,0.58]	chr20	781915	28	UTR3	UTR3:EXON_MRNA	VAPB	ENSG00000124164.16	ENST00000475243.6	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.46839	3.5599800000000004	4.65157	0.0787008	0.0683019	0.193274	0.175203
chr4	856196	856295	2178146	0	-	0.59596	(0.58,1]	chr4	220550	25	INTRON	INTRON	GAK	ENSG00000178950.18	ENST00000314167.9:ENST00000511163.5:ENST00000509566.1:ENST00000515868.5:ENST00000511980.5:ENST00000510799.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	90	2	3.43525	3.55994	3.68463	0.0187495	0.00404771	0.0936297	0.0371291
chr19	942917	943017	7185275	0	+	0.57	(0.523,0.58]	chr19	730741	98	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	172	2	2.80355	3.559515	4.31548	0.00931283	0.005162	0.0644067	0.0472296
chr10	75506787	75506887	4521226	0	+	0.5	(0.485,0.523]	chr10	432249	552	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.33451	3.559385	4.78426	0.0660335	0.0426546	0.162385	0.149802
chr19	34387196	34387296	7243222	0	+	0.48	(0.45,0.485]	chr19	741718	52	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	103	2	1.88048	3.558915	5.23735	0.0959675	0.00687715	0.189169	0.0526888
chr20	48933602	48933702	7490271	0	+	0.41	(0.39,0.419]	chr20	780774	112	INTRON	INTRON	ARFGEF2	ENSG00000124198.10	ENST00000371917.5:ENST00000681399.1:ENST00000679436.1:ENST00000681885.1:ENST00000681021.1:ENST00000680871.1:ENST00000681656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	56	2	2.41984	3.55891	4.69798	0.088901	0.0393507	0.183874	0.143358
chr17	72551837	72551937	6963829	0	-	0.56	(0.523,0.58]	chr17	710389	174	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	3	62	2	1.99726	3.55888	5.1205	0.0559624	0.0416463	0.171577	0.136301
chr16	85389136	85389236	6516962	0	+	0.58	(0.523,0.58]	chr16	646391	298	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.77655	3.558865	4.34118	0.0685533	0.0372357	0.165066	0.139793
chr2	65422165	65422265	1172077	0	-	0.44	(0.419,0.45]	chr2	127582	416	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	3	167	2	3.26471	3.5586599999999997	3.85261	0.0205741	0.00448861	0.0982852	0.0399092
chr17	38726697	38726797	6729350	0	+	0.61	(0.58,1]	chr17	676371	12	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	MLLT6	ENSG00000275023.5	ENST00000621332.5:ENST00000619356.1:ENST00000615741.1:ENST00000615441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	449	2	3.11221	3.55833	4.00445	0.00530504	8.85941e-5	0.047841	0.00249481
chr19	949900	950000	7185345	0	+	0.59	(0.58,1]	chr19	730741	168	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	199	2	3.21185	3.558295	3.90474	0.0083819	5.953e-4	0.0615511	0.00989491
chr3	48428168	48428265	1766716	0	-	0.536082	(0.523,0.58]	chr3	182283	25	INTRON	INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	103	2	3.42417	3.55799	3.69181	0.0252027	0.00510333	0.108002	0.0433857
chr19	34392095	34392195	7243271	0	+	0.48	(0.45,0.485]	chr19	741718	101	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	215	2	3.27155	3.55786	3.84417	0.006047	0.00535743	0.0513358	0.0448556
chr20	8388862	8388962	7429156	0	+	0.42	(0.419,0.45]	chr20	773698	168	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	121	2	3.42658	3.55782	3.68906	0.0204916	0.0119035	0.0979776	0.0749304
chr8	120621957	120622057	4058119	0	-	0.45	(0.419,0.45]	chr8	386589	464	INTRON	INTRON	SNTB1	ENSG00000172164.15	ENST00000395601.7:ENST00000517992.2:ENST00000648490.1:ENST00000519177.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	115	2	1.67046	3.557465	5.44447	0.0620538	0.0364384	0.180957	0.128173
chr6	16404664	16404764	3100879	0	-	0.55	(0.523,0.58]	chr6	300842	758	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8	protein_coding	protein_coding	protein_coding	protein_coding	4	71	2	1.80674	3.5573449999999998	5.30795	0.0645707	0.0315825	0.185384	0.120781
chr16	81526086	81526186	6508554	0	+	0.42	(0.419,0.45]	chr16	645911	302	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	117	2	3.521	3.55727	3.59354	0.026666	0.00820853	0.111563	0.0592025
chr1	15065895	15065993	45074	0	+	0.612245	(0.58,1]	chr1	4427	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	KAZN	ENSG00000189337.17	ENST00000636203.1:ENST00000376030.7:ENST00000491547.1:ENST00000361144.9:ENST00000400798.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	161	2	3.17288	3.55669	3.9405	0.0137455	5.32484e-4	0.0800798	0.00913375
chr9	40106057	40106157	4309075	0	-	0.62	(0.58,1]	chr9	411930	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000284116	ENSG00000284116.1	ENST00000639363.1	lncRNA	lncRNA	lncRNA	lncRNA	4	162	2	3.34121	3.55666	3.77211	0.00983889	8.95399e-4	0.067063	0.0131712
chr16	85389736	85389836	6516968	0	+	0.49	(0.485,0.523]	chr16	646391	304	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	56	2	2.98607	3.5566199999999997	4.12717	0.0545434	0.0503063	0.167824	0.148176
chr6	129626952	129627052	3259081	0	-	0.37	(0.36,0.39]	chr6	315400	77	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.5517	3.5562300000000002	4.56076	0.103289	0.0637554	0.197541	0.184651
chr7	139706441	139706541	3723210	0	-	0.46	(0.45,0.485]	chr7	357498	744	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	2	105	2	3.17691	3.556145	3.93538	0.0393744	0.00301535	0.132578	0.0305643
chr3	71422257	71422357	1829671	0	-	0.4	(0.39,0.419]	chr3	188242	616	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000649145.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.48186	3.556115	4.63037	0.0963077	0.0717596	0.199212	0.189169
chr7	139707140	139707240	3723217	0	-	0.55	(0.523,0.58]	chr7	357498	751	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.39285	3.556035	4.71922	0.0721601	0.0376513	0.168159	0.140049
chr14	54790136	54790235	5821698	0	+	0.585859	(0.58,1]	chr14	569165	13	UTR3	UTR3:EXON_MRNA	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9	protein_coding	protein_coding	protein_coding	protein_coding	9	357	2	3.46352	3.555975	3.64843	0.00310873	4.0604e-4	0.0356126	0.00755833
chr21	46222475	46222529	7680485	0	-	0.648148	(0.58,1]	chr21	803146	1	SS5_PROX	SS5_PROX:INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000457828.6:ENST00000522411.5:ENST00000464357.1:ENST00000450351.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	67	2	2.53151	3.55588	4.58025	0.0446412	0.0172566	0.140478	0.0923809
chr15	101430263	101430363	6363856	0	-	0.52	(0.485,0.523]	chr15	627269	2	SS3_PROX	SS3_PROX:INTRON	PCSK6	ENSG00000140479.18	ENST00000398185.6:ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000611967.4:ENST00000615296.4:ENST00000559417.2:ENST00000331826.12:ENST00000678918.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	38	2	2.60361	3.5549749999999998	4.50634	0.0939553	0.0541523	0.188571	0.167824
chr2	61238179	61238279	1155305	0	-	0.5	(0.485,0.523]	chr2	126540	14	INTRON	INTRON	USP34	ENSG00000115464.15	ENST00000398571.7:ENST00000411912.5:ENST00000463046.5:ENST00000472706.5:ENST00000453734.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	38	2	2.60361	3.5549749999999998	4.50634	0.0939553	0.0541523	0.188571	0.167824
chr2	101718633	101718733	860842	0	+	0.49	(0.485,0.523]	chr2	97528	197	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.60361	3.5549749999999998	4.50634	0.0939553	0.0541523	0.188571	0.167824
chr19	941122	941222	7185257	0	+	0.71	(0.58,1]	chr19	730741	80	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	287	2	3.5233	3.554965	3.58663	0.00329218	7.80685e-4	0.0368338	0.01194
chr14	91223278	91223378	5899590	0	+	0.46	(0.45,0.485]	chr14	576436	2	SS3_PROX	SS3_PROX:INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	105	2	3.12123	3.554665	3.9881	0.0428769	0.0026335	0.137868	0.0278798
chr11	70817664	70817764	5062460	0	-	0.52	(0.485,0.523]	chr11	492713	101	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.45723	3.554605	4.65198	0.0783889	0.0700289	0.195209	0.175203
chr13	97376040	97376140	5632352	0	+	0.49	(0.485,0.523]	chr13	553226	91	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000449284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.45723	3.554605	4.65198	0.0783889	0.0700289	0.195209	0.175203
chr13	113333966	113334066	5753270	0	-	0.5	(0.485,0.523]	chr13	564094	75	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.45723	3.554605	4.65198	0.0783889	0.0700289	0.195209	0.175203
chr7	32739753	32739853	3341836	0	+	0.4	(0.39,0.419]	chr7	323408	63	INTRON	INTRON	ZNRF2P1	ENSG00000237004.4	ENST00000650302.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	1	40	2	2.54977	3.5545999999999998	4.55943	0.104562	0.0640389	0.19835	0.184676
chr3	5212818	5212918	1399265	0	+	0.52	(0.485,0.523]	chr3	149908	1	SS3_PROX	SS3_PROX:INTRON	EDEM1	ENSG00000134109.11	ENST00000256497.9	protein_coding	protein_coding	protein_coding	protein_coding	2	104	2	3.49585	3.55444	3.61303	0.0222996	0.00630038	0.102226	0.0501647
chr10	75499692	75499792	4521155	0	+	0.53	(0.523,0.58]	chr10	432249	481	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.03822	3.553895	5.06957	0.0516351	0.0448011	0.166192	0.140478
chr15	101353448	101353548	6363073	0	-	0.58	(0.523,0.58]	chr15	627201	53	INTRON	INTRON	PCSK6	ENSG00000140479.18	ENST00000677364.1:ENST00000676598.1:ENST00000558951.5:ENST00000398185.6:ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000679007.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000559605.1:ENST00000560902.5:ENST00000611967.4:ENST00000615296.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	2.14543	3.5537	4.96197	0.0609283	0.0521137	0.179956	0.148503
chr7	34725473	34725572	3572883	0	-	0.494949	(0.485,0.523]	chr7	344532	17	INTRON	INTRON	NPSR1-AS1	ENSG00000197085.11	ENST00000419766.5:ENST00000539747.5:ENST00000439852.5:ENST00000358772.8:ENST00000431669.5:ENST00000428922.5:ENST00000436945.4	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	103	2	3.4264	3.55349	3.68058	0.025039	0.0053378	0.10758	0.0447225
chr3	101586400	101586498	1523753	0	+	0.387755	(0.36,0.39]	chr3	162106	5	INTRON	INTRON	PCNP	ENSG00000081154.12	ENST00000265260.8:ENST00000498274.5:ENST00000460231.5:ENST00000469941.5:ENST00000486406.5:ENST00000470490.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	112	2	2.93677	3.553165	4.16956	0.0598652	0.00192895	0.158491	0.0224816
chr13	112872000	112872100	5654392	0	+	0.52	(0.485,0.523]	chr13	555051	2	SS5_PROX	SS5_PROX:INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000471555.5:ENST00000415301.2:ENST00000419631.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	105	2	2.81545	3.55288	4.29031	0.0647139	0.00107516	0.162218	0.0148869
chr1	10108173	10108273	23111	0	+	0.59	(0.58,1]	chr1	2539	4	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.55596	3.552615	4.54927	0.0643046	0.0534085	0.167062	0.161669
chr17	17827385	17827484	6865797	0	-	0.666667	(0.58,1]	chr17	695923	34	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.55596	3.552615	4.54927	0.0643046	0.0534085	0.167062	0.161669
chr8	141412420	141412519	3925960	0	+	0.646465	(0.58,1]	chr8	374788	200	INTRON	INTRON	PTP4A3	ENSG00000184489.13	ENST00000520105.5:ENST00000521578.6:ENST00000523147.5	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.55596	3.552615	4.54927	0.0643046	0.0534085	0.167062	0.161669
chr1	3469893	3469993	5807	0	+	0.61	(0.58,1]	chr1	1228	3	SS5_PROX	SS5_PROX:INTRON	ARHGEF16	ENSG00000130762.15	ENST00000378378.9:ENST00000378373.5:ENST00000378371.6:ENST00000445297.5	protein_coding	protein_coding	protein_coding	protein_coding	2	94	2	3.39676	3.552505	3.70825	0.0111705	0.0085026	0.0716525	0.0608246
chr4	2815607	2815702	2000263	0	+	0.610526	(0.58,1]	chr4	203933	3	INTRON	INTRON	SH3BP2	ENSG00000087266.17	ENST00000503219.5:ENST00000512131.5:ENST00000503393.8:ENST00000510074.5:ENST00000511237.5:ENST00000504294.5:ENST00000508385.5:ENST00000513020.5:ENST00000511663.5:ENST00000512014.5:ENST00000513095.5:ENST00000502260.5:ENST00000435136.8:ENST00000511185.5:ENST00000508338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	48	2	2.48056	3.552295	4.62403	0.0578275	0.0277636	0.154343	0.12074
chr1	228144988	228145081	358035	0	+	0.602151	(0.58,1]	chr1	40405	2	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5:ENST00000366718.5:ENST00000470040.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.15496	3.55189	4.94882	0.0548868	0.0354433	0.168717	0.127188
chr5	10708871	10708971	2612125	0	-	0.32	(0.29,0.33]	chr5	260254	249	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.51537	3.55153	4.58769	0.0806047	0.0639396	0.184676	0.177452
chr11	120438842	120438941	4952198	0	+	0.363636	(0.36,0.39]	chr11	478416	5	EXON_MRNA	EXON_MRNA:INTRON	ARHGEF12	ENSG00000196914.9	ENST00000397843.7:ENST00000356641.7:ENST00000532993.5:ENST00000529970.5:ENST00000528225.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	74	2	2.2404	3.551445	4.86249	0.0905501	0.0181775	0.186696	0.0955836
chr11	70745781	70745881	5061739	0	-	0.56	(0.523,0.58]	chr11	492701	279	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.57767	3.551285	4.5249	0.090356	0.0266135	0.186369	0.118113
chr13	113028348	113028446	5655912	0	+	0.540816	(0.523,0.58]	chr13	555157	14	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000486806.1:ENST00000473345.5	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.57767	3.551285	4.5249	0.090356	0.0266135	0.186369	0.118113
chr1	43568989	43569089	107129	0	+	0.62	(0.58,1]	chr1	13192	147	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	44	2	2.61009	3.550625	4.49116	0.0747426	0.0207449	0.172361	0.102713
chr11	61760333	61760433	4862572	0	+	0.66	(0.58,1]	chr11	466004	45	INTRON	INTRON	MYRF	ENSG00000124920.14	ENST00000278836.10:ENST00000537766.1:ENST00000265460.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	44	2	2.61009	3.550625	4.49116	0.0747426	0.0207449	0.172361	0.102713
chr21	44872853	44872942	7678571	0	-	0.539326	(0.523,0.58]	chr21	802776	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	500	2	3.30097	3.55042	3.79987	0.0025374	0.0023692	0.0306946	0.0271846
chrX	133908856	133908956	8115256	0	-	0.31	(0.29,0.33]	chrX	845529	739	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	62	2	1.9237	3.5503	5.1769	0.0654677	0.035586	0.187786	0.127529
chr20	63733285	63733352	7509372	0	+	0.686567	(0.58,1]	chr20	783518	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1:ENST00000632538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.27185	3.54969	4.82753	0.0433824	0.0427798	0.152119	0.13762
chr18	76423960	76424060	7179359	0	-	0.58	(0.523,0.58]	chr18	730080	433	INTRON	INTRON	ZNF516	ENSG00000101493.11	ENST00000443185.7	protein_coding	protein_coding	protein_coding	protein_coding	2	101	2	3.16507	3.54964	3.93421	0.0382777	0.00274644	0.131324	0.028553
chr2	62917239	62917339	816083	0	+	0.38	(0.36,0.39]	chr2	92141	356	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.53819	3.549475	4.56076	0.103289	0.0310559	0.197541	0.127822
chr4	715538	715638	1993783	0	+	0.57	(0.523,0.58]	chr4	203088	92	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	2.48975	3.549215	4.60868	0.101574	0.0226775	0.196431	0.108193
chr4	151259891	151259991	2351882	0	-	0.57	(0.523,0.58]	chr4	235107	320	INTRON	INTRON	SH3D19	ENSG00000109686.19	ENST00000604030.7:ENST00000604440.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	48	2	2.48975	3.549215	4.60868	0.101574	0.0226775	0.196431	0.108193
chr11	70873921	70874020	5063026	0	-	0.454545	(0.45,0.485]	chr11	492728	9	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000645599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	106	2	3.42699	3.54896	3.67093	0.0265227	0.00582542	0.111258	0.0473208
chr20	41157608	41157708	7479628	0	+	0.52	(0.485,0.523]	chr20	778970	194	INTRON	INTRON	PLCG1	ENSG00000124181.15	ENST00000244007.7:ENST00000373271.5:ENST00000685551.1:ENST00000490253.1:ENST00000483646.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	48	2	2.49197	3.5485749999999996	4.60518	0.10114	0.0233371	0.196131	0.110098
chr19	32982945	32983045	7363827	0	-	0.59	(0.58,1]	chr19	763279	23	INTRON	INTRON	RHPN2	ENSG00000131941.8	ENST00000254260.8:ENST00000544458.6:ENST00000588388.5:ENST00000588683.1:ENST00000592247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	123	2	3.08073	3.54848	4.01623	0.0164389	0.00161478	0.0877632	0.0199131
chr11	70766166	70766266	5061943	0	-	0.53	(0.523,0.58]	chr11	492701	483	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	2.66054	3.548255	4.43597	0.0806884	0.0313935	0.177452	0.127822
chr13	98537096	98537196	5747892	0	-	0.57	(0.523,0.58]	chr13	563357	152	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	50	2	2.66054	3.548255	4.43597	0.0806884	0.0313935	0.177452	0.127822
chr7	97971834	97971934	3647669	0	-	0.48	(0.45,0.485]	chr7	351036	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000284707:CCZ1P1	ENSG00000284707.2:ENSG00000243554.1	ENST00000641784.1:ENST00000641390.1:ENST00000453589.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	2	52	2	2.08776	3.5481749999999996	5.00859	0.0696113	0.052901	0.194713	0.14912
chr22	26452056	26452154	7772690	0	-	0.336735	(0.33,0.36]	chr22	815279	13	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	HPS4	ENSG00000100099.21	ENST00000519774.5:ENST00000493455.6:ENST00000398145.7:ENST00000491142.1:ENST00000466781.5:ENST00000439453.5:ENST00000336873.9:ENST00000402105.7:ENST00000464362.5:ENST00000429411.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	107	2	3.3445	3.548165	3.75183	0.0307153	0.00511828	0.119442	0.0434952
chr2	39108540	39108640	1127239	0	-	0.45	(0.419,0.45]	chr2	123480	102	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	315	2	3.51908	3.54814	3.5772	0.00962955	0.00169444	0.0659937	0.0204875
chr13	75459074	75459174	5727775	0	-	0.6	(0.58,1]	chr13	561722	819	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.47204	3.548035	4.62403	0.0623526	0.0578275	0.181127	0.154343
chr17	82150560	82150659	6987879	0	-	0.626263	(0.58,1]	chr17	714577	148	INTRON	INTRON	CCDC57	ENSG00000176155.21	ENST00000694881.1:ENST00000389641.9:ENST00000694882.1:ENST00000665763.1:ENST00000578910.2:ENST00000419322.6:ENST00000392346.6:ENST00000582040.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.47204	3.548035	4.62403	0.0623526	0.0578275	0.181127	0.154343
chr19	1287800	1287899	7186882	0	+	0.606061	(0.58,1]	chr19	731132	11	INTRON	INTRON	EFNA2	ENSG00000099617.4	ENST00000215368.4	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.47204	3.548035	4.62403	0.0623526	0.0578275	0.181127	0.154343
chr2	117917859	117917959	1259304	0	-	0.6	(0.58,1]	chr2	135665	25	UTR3	UTR3:EXON_MRNA	CCDC93	ENSG00000125633.11	ENST00000319432.9:ENST00000376300.7	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.47204	3.548035	4.62403	0.0623526	0.0578275	0.181127	0.154343
chr4	3219397	3219491	2004092	0	+	0.585106	(0.58,1]	chr4	204561	11	INTRON	INTRON	HTT	ENSG00000197386.14	ENST00000680956.1:ENST00000680360.1:ENST00000681528.1:ENST00000680239.1:ENST00000355072.11:ENST00000510626.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.47204	3.548035	4.62403	0.0623526	0.0578275	0.181127	0.154343
chr7	219054	219154	3305845	0	+	0.65	(0.58,1]	chr7	320161	97	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.47204	3.548035	4.62403	0.0623526	0.0578275	0.181127	0.154343
chr9	133850300	133850399	4428901	0	-	0.636364	(0.58,1]	chr9	423304	156	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	1	35	2	2.47204	3.548035	4.62403	0.0623526	0.0578275	0.181127	0.154343
chr1	31286463	31286563	436253	0	-	0.51	(0.485,0.523]	chr1	51636	41	INTRON	INTRON	SNRNP40	ENSG00000060688.13	ENST00000263694.9:ENST00000474025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	2.13331	3.54785	4.96239	0.0626854	0.0518747	0.181933	0.148503
chr17	77466760	77466860	6805046	0	+	0.51	(0.485,0.523]	chr17	686809	2	SS5_PROX	SS5_PROX:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	51	2	2.13331	3.54785	4.96239	0.0626854	0.0518747	0.181933	0.148503
chr17	14419856	14419956	6683735	0	+	0.4	(0.39,0.419]	chr17	670768	223	INTRON	INTRON	ENSG00000230647	ENSG00000230647.2	ENST00000436469.1:ENST00000655690.1	lncRNA	lncRNA	lncRNA	lncRNA	2	54	2	2.15477	3.547685	4.9406	0.0658437	0.0645366	0.185295	0.162385
chr15	72343780	72343878	6317504	0	-	0.479592	(0.45,0.485]	chr15	622881	30	UTR3	UTR3:EXON_MRNA	HEXA	ENSG00000213614.11	ENST00000268097.10:ENST00000683243.1:ENST00000684263.1:ENST00000683853.1:ENST00000683548.1:ENST00000683463.1:ENST00000683587.1:ENST00000684125.1:ENST00000684231.1:ENST00000684203.1:ENST00000683735.1:ENST00000684602.1:ENST00000682721.1:ENST00000683579.1:ENST00000682843.1:ENST00000684667.1:ENST00000683133.1:ENST00000684305.1:ENST00000682461.1:ENST00000682064.1:ENST00000682235.1:ENST00000682653.1:ENST00000565873.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	2.14074	3.54727	4.9538	0.0632663	0.0569772	0.183518	0.154343
chr2	47175311	47175387	1140497	0	-	0.460526	(0.45,0.485]	chr2	124846	2	UTR5	UTR5:EXON_MRNA:INTRON	CALM2	ENSG00000143933.20	ENST00000272298.12:ENST00000652974.1:ENST00000655450.1:ENST00000432899.5:ENST00000456319.6:ENST00000656538.1:ENST00000668667.1:ENST00000655728.1:ENST00000409563.5:ENST00000484408.5:ENST00000489742.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	2.14074	3.54727	4.9538	0.0632663	0.0569772	0.183518	0.154343
chr22	48695075	48695174	7751218	0	+	0.474747	(0.45,0.485]	chr22	812283	13	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	53	2	2.76944	3.547175	4.32491	0.0716626	0.0418883	0.168159	0.149021
chr20	62274402	62274501	7506852	0	+	0.50505	(0.485,0.523]	chr20	782712	6	INTRON	INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	109	2	3.34812	3.5462550000000004	3.74439	0.0145578	0.0117752	0.0824156	0.0743709
chr20	8275101	8275201	7428013	0	+	0.36	(0.33,0.36]	chr20	773686	183	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	143	2	3.42477	3.545995	3.66722	0.0181424	0.00390283	0.0921579	0.0364654
chr10	7722469	7722565	4442141	0	+	0.427083	(0.419,0.45]	chr10	425524	3	INTRON	INTRON	ITIH2	ENSG00000151655.19	ENST00000358415.9:ENST00000379587.4	protein_coding	protein_coding	protein_coding	protein_coding	3	70	2	2.27509	3.5458999999999996	4.81671	0.08258	0.0362019	0.179396	0.139793
chr8	128039725	128039804	3920278	0	+	0.468354	(0.45,0.485]	chr8	374318	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1:ENST00000658429.1	lncRNA	lncRNA	lncRNA	lncRNA	2	53	2	2.37986	3.54548	4.7111	0.0781398	0.0401325	0.175203	0.144727
chr11	96247595	96247695	5112612	0	-	0.44	(0.419,0.45]	chr11	496566	1537	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.61392	3.5453799999999998	4.47684	0.0961463	0.0389508	0.189169	0.142578
chr2	222913724	222913823	1038238	0	+	0.30303	(0.29,0.33]	chr2	113229	21	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000542810.1:ENST00000540115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	138	2	3.1488	3.545115	3.94143	0.00964217	0.00700975	0.0659937	0.0536484
chr13	75392890	75392990	5727113	0	-	0.43	(0.419,0.45]	chr13	561722	157	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	3	153	2	3.43953	3.5450999999999997	3.65067	0.0302191	0.00249015	0.118034	0.0267758
chr14	89269053	89269153	6026789	0	-	0.45	(0.419,0.45]	chr14	591436	46	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	57	2	2.46706	3.544895	4.62273	0.103601	0.0367089	0.197541	0.139793
chr6	154778644	154778743	3044566	0	+	0.585859	(0.58,1]	chr6	296638	2	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.32693	3.544885	4.76284	0.0471737	0.038688	0.143232	0.142489
chr6	2834793	2834886	3085367	0	-	0.333333	(0.33,0.36]	chr6	299537	4	INTRON	INTRON	SERPINB1	ENSG00000021355.13	ENST00000380739.6:ENST00000468511.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.51922	3.544785	4.57035	0.0945416	0.0659899	0.189025	0.188571
chr9	85728017	85728116	4330444	0	-	0.343434	(0.33,0.36]	chr9	413683	151	INTRON	INTRON	AGTPBP1	ENSG00000135049.16	ENST00000357081.8:ENST00000376083.7:ENST00000337006.8:ENST00000628899.1:ENST00000376081.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.51922	3.544785	4.57035	0.0945416	0.0659899	0.189025	0.188571
chr17	36577792	36577887	6725357	0	+	0.326316	(0.29,0.33]	chr17	675821	13	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	GGNBP2	ENSG00000278311.5	ENST00000613102.5:ENST00000617860.4:ENST00000618837.4:ENST00000619573.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	52	2	2.36234	3.544345	4.72635	0.0672935	0.0408274	0.163263	0.147009
chr10	103692327	103692427	4757019	0	-	0.75	(0.58,1]	chr10	454779	143	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.02776	3.5442299999999998	5.0607	0.0700362	0.029633	0.195209	0.116079
chr7	47498317	47498417	3588795	0	-	0.63	(0.58,1]	chr7	346132	168	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.02776	3.5442299999999998	5.0607	0.0700362	0.029633	0.195209	0.116079
chr4	77819432	77819489	2256078	0	-	0.719298	(0.58,1]	chr4	227837	2	SS5_PROX	SS5_PROX:INTRON	CNOT6L	ENSG00000138767.14	ENST00000512485.6	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.79178	3.54316	4.29454	0.0565563	0.0305531	0.154343	0.126768
chr17	72529324	72529424	6963600	0	-	0.36	(0.33,0.36]	chr17	710377	24	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	2	54	2	2.37729	3.5431150000000002	4.70894	0.0798152	0.0415835	0.176933	0.148959
chr1	44519525	44519625	113198	0	+	0.47	(0.45,0.485]	chr1	14018	998	INTRON	INTRON	RNF220	ENSG00000187147.18	ENST00000355387.6:ENST00000361799.7:ENST00000372247.6	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	2.66534	3.542485	4.41963	0.046065	0.0355247	0.142918	0.137983
chr17	58366170	58366269	6932530	0	-	0.474747	(0.45,0.485]	chr17	706609	22	INTRON	INTRON	RNF43	ENSG00000108375.13	ENST00000577716.5:ENST00000407977.7:ENST00000584437.5:ENST00000583753.5:ENST00000577625.5:ENST00000581868.1	protein_coding	protein_coding	protein_coding	protein_coding	3	140	2	3.49427	3.5421250000000004	3.58998	0.0237694	0.00234971	0.105296	0.0258499
chr16	81540682	81540782	6508700	0	+	0.55	(0.523,0.58]	chr16	645911	448	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	4	172	2	2.82644	3.5420499999999997	4.2576599999999996	0.0244165	0.00114788	0.106683	0.0156784
chr12	10716840	10716933	5369043	0	-	0.516129	(0.485,0.523]	chr12	526709	7	INTRON	INTRON	YBX3	ENSG00000060138.13	ENST00000228251.9:ENST00000279550.11:ENST00000540447.5:ENST00000542641.5:ENST00000539204.5:ENST00000544622.4:ENST00000546298.5:ENST00000544501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	51	2	2.23742	3.5417650000000003	4.84611	0.0608067	0.0515447	0.165949	0.158506
chr16	81635674	81635774	6509654	0	+	0.47	(0.45,0.485]	chr16	645926	136	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	2	105	2	3.38032	3.54157	3.70282	0.0285946	0.00539085	0.115498	0.0450882
chr12	95946080	95946178	5296756	0	+	0.459184	(0.45,0.485]	chr12	515477	22	INTRON	INTRON	AMDHD1	ENSG00000139344.8	ENST00000266736.7:ENST00000548310.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	49	2	2.49062	3.541435	4.59225	0.104221	0.0259502	0.19835	0.116361
chr16	81631782	81631882	6509615	0	+	0.47	(0.45,0.485]	chr16	645926	97	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.49062	3.541435	4.59225	0.104221	0.0259502	0.19835	0.116361
chr6	3444418	3444518	3087942	0	-	0.52	(0.485,0.523]	chr6	299809	2	SS5_PROX	SS5_PROX:INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	138	2	3.19335	3.54122	3.88909	0.011267	0.00612254	0.0721366	0.0489549
chr17	46185522	46185622	6917756	0	-	0.28	[0,0.29]	chr17	704580	129	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639150.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1:ENST00000576739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	49	2	2.19892	3.54089	4.88286	0.0535916	0.041613	0.167607	0.136301
chrX	7926885	7926985	7976970	0	-	0.56	(0.523,0.58]	chrX	834831	2	SS5_PROX	SS5_PROX:INTRON	PNPLA4	ENSG00000006757.12	ENST00000381042.9:ENST00000444736.5:ENST00000537427.5:ENST00000442940.1	protein_coding	protein_coding	protein_coding	protein_coding	5	81	2	1.91182	3.540755	5.16969	0.044405	0.0387762	0.153511	0.131324
chr19	56837818	56837916	7410699	0	-	0.622449	(0.58,1]	chr19	771674	1	INTRON	INTRON	ZIM2:PEG3	ENSG00000269699.7:ENSG00000198300.14	ENST00000593711.6:ENST00000689654.1:ENST00000629319.3:ENST00000599935.5:ENST00000693159.1:ENST00000650111.1:ENST00000648694.1:ENST00000326441.15:ENST00000649233.1:ENST00000649680.1:ENST00000649876.1:ENST00000650632.1:ENST00000650102.1:ENST00000649735.1:ENST00000647621.1:ENST00000598410.5:ENST00000593695.5:ENST00000599577.5:ENST00000594389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	94	2	3.35051	3.5406	3.73069	0.0106925	0.00953058	0.0701355	0.0650078
chr6	16390765	16390865	3100740	0	-	0.48	(0.45,0.485]	chr6	300842	619	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8	protein_coding	protein_coding	protein_coding	protein_coding	4	174	2	2.23838	3.5401949999999998	4.84201	0.0664069	2.49386e-4	0.162385	0.00530842
chr11	70738687	70738787	5061668	0	-	0.6	(0.58,1]	chr11	492701	208	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	92	2	3.44157	3.54017	3.63877	0.0127766	0.00760198	0.0769397	0.0561937
chr2	235510935	235511034	1062705	0	+	0.585859	(0.58,1]	chr2	115651	157	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	143	2	2.94305	3.5393549999999996	4.13566	0.00516797	0.00472191	0.0449204	0.0437977
chr13	113109097	113109196	5656717	0	+	0.707071	(0.58,1]	chr13	555352	18	INTRON	INTRON	F7	ENSG00000057593.14	ENST00000541084.5:ENST00000346342.8:ENST00000375581.3:ENST00000444337.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	35	2	2.38295	3.539025	4.6951	0.0730701	0.0521567	0.199669	0.148503
chr2	27314990	27315085	1111556	0	-	0.621053	(0.58,1]	chr2	121367	15	INTRON	INTRON	MPV17	ENSG00000115204.15	ENST00000380044.6:ENST00000402310.5:ENST00000233545.6:ENST00000357186.10:ENST00000402722.5:ENST00000426513.6:ENST00000405983.5:ENST00000405076.5:ENST00000621183.4:ENST00000415514.5:ENST00000403262.6:ENST00000617583.4:ENST00000428910.5:ENST00000621470.4:ENST00000622003.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	35	2	2.38295	3.539025	4.6951	0.0730701	0.0521567	0.199669	0.148503
chr11	65436253	65436353	4871704	0	+	0.53	(0.523,0.58]	chr11	468177	136	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	19	947	2	3.05406	3.53902	4.02398	0.00139336	0.00120061	0.0210159	0.0179827
chr7	47362387	47362487	3587415	0	-	0.47	(0.45,0.485]	chr7	346030	157	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	3	140	2	3.44977	3.5386800000000003	3.62759	0.0255605	0.00212514	0.109062	0.0240165
chr22	50706352	50706452	7755248	0	+	0.62	(0.58,1]	chr22	812776	2	SS5_PROX	SS5_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	68	2	2.58616	3.53866	4.49116	0.0406424	0.0207449	0.135868	0.102713
chrX	110116735	110116835	7934770	0	+	0.49	(0.485,0.523]	chrX	830401	72	INTRON	INTRON	TMEM164	ENSG00000157600.12	ENST00000372072.7:ENST00000372073.5:ENST00000372068.7:ENST00000288381.4:ENST00000461715.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	106	2	2.70247	3.53838	4.37429	0.0759932	8.506e-4	0.174411	0.0126678
chr5	14696399	14696498	2387652	0	+	0.343434	(0.33,0.36]	chr5	238863	35	UTR3	UTR3:EXON_MRNA	OTULIN	ENSG00000154124.5	ENST00000284274.5	protein_coding	protein_coding	protein_coding	protein_coding	2	106	2	3.29545	3.53829	3.78113	0.0331843	0.00476732	0.123484	0.0414524
chr1	96796812	96796911	191110	0	+	0.373737	(0.36,0.39]	chr1	20699	112	INTRON	INTRON	PTBP2	ENSG00000117569.19	ENST00000482253.5:ENST00000675735.1:ENST00000609116.5:ENST00000674951.1:ENST00000675080.1:ENST00000426398.3:ENST00000370197.5:ENST00000370198.5:ENST00000476419.5:ENST00000676292.1:ENST00000676096.1:ENST00000675365.1:ENST00000674579.1:ENST00000675401.1:ENST00000459735.5:ENST00000476783.5:ENST00000492905.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	2.25073	3.5382249999999997	4.82572	0.0751666	0.054166	0.172839	0.167824
chr6	160068385	160068485	3066298	0	+	0.62	(0.58,1]	chr6	298072	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	91	2	3.48503	3.537775	3.59052	0.014012	0.006811	0.0807513	0.0524379
chr6	155255936	155256034	3297580	0	-	0.581633	(0.58,1]	chr6	319132	18	EXON_LNCRNA	EXON_LNCRNA	ENSG00000235381	ENSG00000235381.1	ENST00000435295.1	lncRNA	lncRNA	lncRNA	lncRNA	2	47	2	2.37998	3.53754	4.6951	0.0521567	0.0345705	0.148503	0.135397
chr2	235517129	235517229	1062767	0	+	0.52	(0.485,0.523]	chr2	115651	219	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	106	2	3.4289	3.53744	3.64598	0.0172726	0.00977282	0.0897247	0.0664239
chr4	10103495	10103595	2195685	0	-	0.39	(0.36,0.39]	chr4	222413	2	SS5_PROX	SS5_PROX:INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	109	2	3.19032	3.53698	3.88364	0.0414113	0.00394555	0.136301	0.0367806
chr6	128515829	128515929	3257129	0	-	0.38	(0.36,0.39]	chr6	315230	236	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000524534.5:ENST00000525459.1:ENST00000392449.4:ENST00000532751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	109	2	3.1377	3.53655	3.9354	0.0447786	0.00347533	0.140478	0.0336331
chr12	24877129	24877229	5395343	0	-	0.41	(0.39,0.419]	chr12	528298	268	INTRON	INTRON	BCAT1	ENSG00000060982.15	ENST00000261192.12:ENST00000538118.5:ENST00000342945.9:ENST00000539282.5:ENST00000539780.5:ENST00000544418.1:ENST00000612790.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay:processed_transcript	2	54	2	2.24864	3.536515	4.82439	0.0762206	0.0544427	0.174484	0.167824
chr11	33140470	33140569	5022388	0	-	0.353535	(0.33,0.36]	chr11	485801	39	INTRON	INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6:ENST00000526480.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	65	2	2.12031	3.53597	4.95163	0.0583482	0.0467883	0.156817	0.155373
chr10	75464216	75464316	4520800	0	+	0.51	(0.485,0.523]	chr10	432249	126	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.28678	3.53552	4.78426	0.0660335	0.046853	0.162385	0.156896
chr21	45475942	45476035	7631027	0	+	0.72043	(0.58,1]	chr21	797680	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	2	89	2	3.46232	3.535195	3.60807	0.0178328	0.00495688	0.0915706	0.0425347
chr5	150028199	150028297	2564130	0	+	0.428571	(0.419,0.45]	chr5	254732	7	INTRON	INTRON	HMGXB3	ENSG00000113716.13	ENST00000613459.4:ENST00000503427.5:ENST00000502717.6:ENST00000514469.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	116	2	3.52905	3.53486	3.54067	0.025866	0.00949141	0.109555	0.0650078
chr1	43563608	43563708	107075	0	+	0.6	(0.58,1]	chr1	13192	93	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	126	2	3.24259	3.5345649999999997	3.82654	0.0119819	0.00275362	0.0743424	0.0285628
chr1	43565601	43565701	107095	0	+	0.72	(0.58,1]	chr1	13192	113	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	122	2	3.03776	3.534415	4.03107	0.00720487	0.00585987	0.0543254	0.0506158
chr7	29309041	29309140	3335436	0	+	0.363636	(0.36,0.39]	chr7	322854	157	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5:ENST00000222792.11:ENST00000409350.5:ENST00000409964.6:ENST00000409922.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	147	2	3.47116	3.534335	3.59751	0.0269033	0.0026822	0.112113	0.0282423
chr10	75509186	75509285	4521250	0	+	0.525253	(0.523,0.58]	chr10	432249	576	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	4	169	2	2.14435	3.534195	4.92404	0.0737044	1.65466e-4	0.17051	0.00395841
chr21	44864894	44864994	7678487	0	-	0.63	(0.58,1]	chr21	802765	1	SS5_PROX	SS5_PROX:INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000474737.5:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	92	2	2.5771	3.53413	4.49116	0.0290799	0.0207449	0.116079	0.102713
chr13	75392690	75392790	5727111	0	-	0.58	(0.523,0.58]	chr13	561722	155	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	2	101	2	3.37594	3.533875	3.69181	0.0272868	0.00510333	0.112327	0.0433857
chr10	75499992	75500092	4521158	0	+	0.4	(0.39,0.419]	chr10	432249	484	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	1.96828	3.53367	5.09906	0.0640398	0.0535378	0.184676	0.150319
chr17	77305247	77305347	6803403	0	+	0.64	(0.58,1]	chr17	686716	100	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.40217	3.533165	4.66416	0.100879	0.0144381	0.196131	0.0833845
chr1	43561515	43561615	107054	0	+	0.53	(0.523,0.58]	chr1	13192	72	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	100	2	3.0773	3.5331200000000003	3.98894	0.0438724	0.00237791	0.139792	0.026
chr4	1872540	1872640	1995998	0	+	0.46	(0.45,0.485]	chr4	203459	6	INTRON	INTRON	NSD2	ENSG00000109685.19	ENST00000508803.6:ENST00000507820.5:ENST00000508355.5:ENST00000514045.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	104	2	3.33209	3.533055	3.73402	0.0308842	0.0049945	0.119556	0.0428203
chr12	132535157	132535257	5352967	0	+	0.38	(0.36,0.39]	chr12	523670	68	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	3	149	2	2.77223	3.532985	4.29374	0.0418815	0.00139867	0.136901	0.0179877
chrX	2382061	2382161	7967664	0	-	0.46	(0.45,0.485]	chrX	834355	437	INTRON	INTRON	DHRSX	ENSG00000169084.15	ENST00000334651.11:ENST00000412516.7:ENST00000444280.6:ENST00000441131.7:ENST00000478825.7:ENST00000430536.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.28891	3.53231	4.77571	0.0719884	0.0479351	0.168159	0.159092
chr12	69331587	69331685	5451423	0	-	0.489796	(0.485,0.523]	chr12	536323	52	EXON_LNCRNA	EXON_LNCRNA	ENSG00000274979	ENSG00000274979.1	ENST00000613291.1	lncRNA	lncRNA	lncRNA	lncRNA	3	61	2	1.94261	3.531765	5.12092	0.062577	0.0414411	0.181719	0.136301
chr19	34383897	34383997	7243189	0	+	0.5	(0.485,0.523]	chr19	741718	19	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	117	2	3.07448	3.5316549999999998	3.98883	0.0214987	0.00941294	0.10537	0.0653252
chr8	122787445	122787545	3909710	0	+	0.46	(0.45,0.485]	chr8	373449	51	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6	protein_coding	protein_coding	protein_coding	protein_coding	2	108	2	3.46316	3.53152	3.59988	0.0199597	0.00952494	0.0968284	0.0650078
chr17	49007047	49007147	6750118	0	+	0.47	(0.45,0.485]	chr17	680305	23	INTRON	INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000431824.2:ENST00000515586.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.49029	3.531395	4.5725	0.0926859	0.0676934	0.193219	0.188571
chr18	69768726	69768826	7086870	0	+	0.47	(0.45,0.485]	chr18	722163	105	INTRON	INTRON	DOK6	ENSG00000206052.11	ENST00000382713.10:ENST00000577609.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.49029	3.531395	4.5725	0.0926859	0.0676934	0.193219	0.188571
chr8	127124458	127124558	4066218	0	-	0.46	(0.45,0.485]	chr8	387347	71	INTRON	INTRON	CASC19	ENSG00000254166.3	ENST00000642100.1:ENST00000641912.1:ENST00000641919.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	1	38	2	2.49029	3.531395	4.5725	0.0926859	0.0676934	0.193219	0.188571
chr22	24103036	24103115	7695394	0	+	0.607595	(0.58,1]	chr22	805528	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	CABIN1:ENSG00000232545	ENSG00000099991.18:ENSG00000232545.1	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1:ENST00000444093.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	5	79	2	2.23506	3.531295	4.82753	0.0427798	0.0183791	0.13762	0.096291
chr17	80609797	80609897	6809551	0	+	0.38	(0.36,0.39]	chr17	687810	161	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	110	2	2.93677	3.5312200000000002	4.12567	0.0598652	0.00215781	0.158491	0.024213
chr17	43542679	43542779	6909595	0	-	0.57	(0.523,0.58]	chr17	703271	58	INTRON	INTRON	ETV4	ENSG00000175832.13	ENST00000538265.5:ENST00000319349.10:ENST00000393664.6:ENST00000545954.5:ENST00000545089.5:ENST00000591713.5:ENST00000590236.5:ENST00000585508.5:ENST00000587151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	241	2	2.54415	3.5310550000000003	4.51796	0.00762776	0.00350768	0.0562531	0.0379357
chr17	82004244	82004344	6815339	0	+	0.71	(0.58,1]	chr17	688640	70	INTRON	INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	196	2	2.97703	3.53067	4.08431	0.00525202	0.00194716	0.0476984	0.0225748
chr9	123071901	123072001	4235140	0	+	0.49	(0.485,0.523]	chr9	402003	4	SS5_PROX	SS5_PROX:INTRON	RABGAP1	ENSG00000011454.18	ENST00000456584.5:ENST00000373647.9:ENST00000493854.5:ENST00000475607.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	63	2	2.21468	3.5303950000000004	4.84611	0.0608067	0.0363164	0.158506	0.139793
chr16	20904112	20904212	6418000	0	+	0.34	(0.33,0.36]	chr16	634694	10	INTRON	INTRON	LYRM1	ENSG00000102897.10	ENST00000568663.5:ENST00000412082.6:ENST00000439021.5:ENST00000567165.5:ENST00000569023.5:ENST00000568820.5:ENST00000562740.5:ENST00000219168.8:ENST00000567954.6:ENST00000396052.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	2.41942	3.5303649999999998	4.64131	0.0867669	0.0382802	0.182221	0.141157
chr1	8688680	8688780	394441	0	-	0.38	(0.36,0.39]	chr1	45065	319	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000468247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	178	2	2.97525	3.53028	4.08531	0.00973848	0.00735961	0.0664752	0.055174
chr11	68397512	68397612	4882937	0	+	0.62	(0.58,1]	chr11	470578	71	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	47	2	2.87471	3.5299449999999997	4.18518	0.0495478	0.0374658	0.146562	0.139793
chr17	3604751	3604851	6837203	0	-	0.6	(0.58,1]	chr17	691633	26	INTRON	INTRON	TRPV1	ENSG00000196689.13	ENST00000572705.2	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.87471	3.5299449999999997	4.18518	0.0495478	0.0374658	0.146562	0.139793
chr22	31450960	31451060	7787774	0	-	0.47	(0.45,0.485]	chr22	817089	7	EXON_MRNA	EXON_MRNA:INTRON	EIF4ENIF1	ENSG00000184708.18	ENST00000344710.9:ENST00000495101.5:ENST00000330125.10:ENST00000397525.5:ENST00000397523.5:ENST00000418321.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.5616	3.52973	4.49786	0.101311	0.0598406	0.196131	0.177269
chr7	5384388	5384487	3535908	0	-	0.484848	(0.45,0.485]	chr7	341475	60	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000413081.1	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.5616	3.52973	4.49786	0.101311	0.0598406	0.196131	0.177269
chr11	68396220	68396319	4882924	0	+	0.535354	(0.523,0.58]	chr11	470578	58	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.53438	3.5296399999999997	4.5249	0.0957531	0.0266135	0.189038	0.118113
chr7	76994543	76994643	3398745	0	+	0.57	(0.523,0.58]	chr7	328286	38	INTRON	INTRON	DTX2P1-UPK3BP1-PMS2P11	ENSG00000265479.7	ENST00000636308.1:ENST00000584900.5:ENST00000579700.1	lncRNA	lncRNA	lncRNA	lncRNA	1	48	2	2.53438	3.5296399999999997	4.5249	0.0957531	0.0266135	0.189038	0.118113
chr7	158738922	158739022	3742117	0	-	0.57	(0.523,0.58]	chr7	359808	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000435514.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	48	2	2.53438	3.5296399999999997	4.5249	0.0957531	0.0266135	0.189038	0.118113
chr15	56958574	56958674	6110742	0	+	0.39	(0.36,0.39]	chr15	601587	371	INTRON	INTRON	TCF12	ENSG00000140262.18	ENST00000438423.6:ENST00000267811.9:ENST00000333725.10:ENST00000560190.5:ENST00000559609.5:ENST00000558908.5:ENST00000557843.5:ENST00000557947.5:ENST00000561152.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	200	2	3.2155300000000002	3.529425	3.84332	0.0206155	0.00140993	0.0983493	0.0180659
chr11	96248495	96248595	5112621	0	-	0.49	(0.485,0.523]	chr11	496566	1546	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.5366	3.52901	4.52142	0.0953348	0.0273555	0.189038	0.119337
chr17	31243163	31243262	6716330	0	+	0.585859	(0.58,1]	chr17	674558	62	INTRON	INTRON	NF1	ENSG00000196712.20	ENST00000696138.1:ENST00000356175.7:ENST00000691014.1:ENST00000358273.9:ENST00000579081.5:ENST00000495910.6:ENST00000456735.6:ENST00000493220.5:ENST00000696139.1:ENST00000466819.5:ENST00000479614.1:ENST00000687863.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	87	2	3.13234	3.52842	3.9245	0.0322188	0.00209574	0.121593	0.0238576
chr14	24308052	24308149	5759783	0	+	0.505155	(0.485,0.523]	chr14	565585	17	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	NOP9:LTB4R2	ENSG00000196943.14:ENSG00000213906.10	ENST00000267425.8:ENST00000650565.1:ENST00000527924.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	82	2	2.47581	3.5284050000000002	4.581	0.085711	0.0152706	0.181766	0.0865059
chr19	942219	942319	7185268	0	+	0.58	(0.523,0.58]	chr19	730741	91	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	201	2	3.28117	3.52821	3.77525	0.00627762	0.00481434	0.0523832	0.041723
chr7	112115414	112115514	3691662	0	-	0.44	(0.419,0.45]	chr7	354969	1109	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	151	2	3.43953	3.5280750000000003	3.61662	0.0302191	0.0027153	0.118034	0.028553
chr21	45498953	45499052	7631294	0	+	0.575758	(0.523,0.58]	chr21	797812	9	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	1	49	2	2.6197	3.527835	4.43597	0.0853454	0.0313935	0.181766	0.127822
chr10	79165029	79165129	4533007	0	+	0.57	(0.523,0.58]	chr10	432438	25	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	6	277	2	3.50466	3.52783	3.551	0.00650119	0.00143815	0.0532642	0.0183435
chr8	127949036	127949135	3919350	0	+	0.484848	(0.45,0.485]	chr8	374241	57	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1	lncRNA	lncRNA	lncRNA	lncRNA	5	238	2	2.45295	3.5274650000000003	4.60198	0.047734	1.30272e-4	0.144601	0.00332553
chr11	121479841	121479941	4953931	0	+	0.49	(0.485,0.523]	chr11	478664	12	INTRON	INTRON	SORL1	ENSG00000137642.13	ENST00000260197.12:ENST00000532451.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.62192	3.5272049999999995	4.43249	0.0849566	0.0322299	0.181766	0.12988
chr21	45501528	45501627	7631320	0	+	0.626263	(0.58,1]	chr21	797812	35	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	2	87	2	3.26123	3.52679	3.79235	0.0257049	0.00302484	0.109543	0.0305643
chrX	52898277	52898374	7882803	0	+	0.443299	(0.419,0.45]	chrX	826612	11	UTR5	UTR5:EXON_MRNA:INTRON	FAM156B	ENSG00000179304.18	ENST00000610405.4:ENST00000619346.4:ENST00000610609.4:ENST00000612188.4:ENST00000616419.4:ENST00000416841.8:ENST00000593751.7	protein_coding	protein_coding	protein_coding	protein_coding	3	178	2	2.61235	3.526745	4.44114	0.0274539	0.00584232	0.119733	0.0505809
chr1	20774606	20774706	414126	0	-	0.41	(0.39,0.419]	chr1	48419	11	UTR5	UTR5:EXON_MRNA:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5:ENST00000424732.5:ENST00000417710.5	protein_coding	protein_coding	protein_coding	protein_coding	5	208	2	2.64233	3.5266900000000003	4.41105	0.0119845	0.00558447	0.0754036	0.0493906
chr13	98253002	98253102	5634761	0	+	0.43	(0.419,0.45]	chr13	553480	78	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	1	53	2	2.5763	3.52657	4.47684	0.100818	0.0389508	0.196131	0.142578
chr2	11588512	11588598	720767	0	+	0.546512	(0.523,0.58]	chr2	84158	4	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000381483.6:ENST00000234142.9:ENST00000432985.1	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.81323	3.52648	4.23973	0.0650388	0.0444247	0.162385	0.153511
chr12	56597934	56598032	5437632	0	-	0.387755	(0.36,0.39]	chr12	534676	25	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	2	111	2	3.49227	3.52616	3.56005	0.0260212	0.00847528	0.109673	0.0607325
chr1	43593693	43593792	107387	0	+	0.59596	(0.58,1]	chr1	13240	7	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.56085	3.5260049999999996	4.49116	0.0803939	0.0207449	0.177452	0.102713
chr17	57476882	57476982	6761981	0	+	0.48	(0.45,0.485]	chr17	682137	318	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	103	2	3.06332	3.52571	3.9881	0.0467992	0.0026335	0.143232	0.0278798
chr1	40374485	40374566	100234	0	+	0.555556	(0.523,0.58]	chr1	11923	3	SS5_PROX	SS5_PROX:INTRON	SMAP2	ENSG00000084070.12	ENST00000435168.6:ENST00000372718.8	protein_coding	protein_coding	protein_coding	protein_coding	2	100	2	3.32604	3.52524	3.72444	0.0296013	0.00470358	0.116079	0.0413976
chr22	42644289	42644389	7821271	0	-	0.6	(0.58,1]	chr22	820383	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CYB5R3	ENSG00000100243.22	ENST00000693367.1:ENST00000352397.10:ENST00000361740.9:ENST00000688117.1:ENST00000692152.1:ENST00000693363.1:ENST00000689795.1:ENST00000686523.1:ENST00000407332.6:ENST00000687198.1:ENST00000689001.1:ENST00000687183.1:ENST00000691295.1:ENST00000407623.8:ENST00000402438.6:ENST00000690835.1:ENST00000689195.1:ENST00000688244.1:ENST00000690993.1:ENST00000689239.1:ENST00000692344.1:ENST00000438270.2:ENST00000686129.1:ENST00000466276.2:ENST00000693716.1:ENST00000688004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	67	2	2.55909	3.525125	4.49116	0.0425829	0.0207449	0.13762	0.102713
chr13	97240831	97240931	5630989	0	+	0.48	(0.45,0.485]	chr13	553173	179	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	62	2	1.9378	3.5250500000000002	5.1123	0.0646604	0.0458344	0.185606	0.142336
chr19	19503217	19503312	7227730	0	+	0.557895	(0.523,0.58]	chr19	739895	3	INTRON	INTRON	GATAD2A	ENSG00000167491.18	ENST00000360315.7:ENST00000609040.5:ENST00000683918.1:ENST00000404158.5:ENST00000358713.7:ENST00000418032.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	37	2	2.54344	3.524685	4.50593	0.094303	0.0599121	0.188571	0.177269
chr20	32224482	32224581	7454941	0	+	0.575758	(0.523,0.58]	chr20	776030	67	INTRON	INTRON	POFUT1	ENSG00000101346.14	ENST00000375749.8:ENST00000486717.5:ENST00000465791.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.54344	3.524685	4.50593	0.094303	0.0599121	0.188571	0.177269
chr19	7613263	7613363	7199186	0	+	0.59	(0.58,1]	chr19	733912	1	SS5_PROX	SS5_PROX:INTRON	CAMSAP3	ENSG00000076826.10	ENST00000160298.9:ENST00000446248.4	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.38507	3.524615	4.66416	0.057029	0.0144381	0.154343	0.0833845
chr11	70629929	70630029	5060572	0	-	0.55	(0.523,0.58]	chr11	492663	1266	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.46839	3.5244850000000003	4.58058	0.0860403	0.0683019	0.193274	0.181766
chr7	112114914	112115014	3691657	0	-	0.53	(0.523,0.58]	chr7	354969	1104	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	37	2	2.46839	3.5244850000000003	4.58058	0.0860403	0.0683019	0.193274	0.181766
chr7	40089806	40089904	3353750	0	+	0.326531	(0.29,0.33]	chr7	324272	11	INTRON	INTRON	CDK13	ENSG00000065883.17	ENST00000340829.10:ENST00000181839.10:ENST00000646039.1:ENST00000643859.1:ENST00000643915.1:ENST00000478563.2:ENST00000644221.1:ENST00000644561.1:ENST00000645826.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	63	2	2.19575	3.5243	4.85285	0.0567079	0.0382595	0.154343	0.141103
chr6	158628490	158628590	3064592	0	+	0.55	(0.523,0.58]	chr6	297762	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	7	226	2	2.47576	3.52412	4.57248	0.0103445	0.0031568	0.0681675	0.035937
chr17	17823017	17823117	6865751	0	-	0.49	(0.485,0.523]	chr17	695916	1	SS5_PROX	SS5_PROX:INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	136	2	3.19335	3.5238050000000003	3.85426	0.0119901	0.00612254	0.0743424	0.0489549
chr12	26703808	26703908	5400296	0	-	0.43	(0.419,0.45]	chr12	528692	78	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000540791.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.17119	3.523585	4.87598	0.0768574	0.0637569	0.184651	0.174882
chr21	37083060	37083158	7617509	0	+	0.44898	(0.419,0.45]	chr21	795681	16	UTR5	UTR5:EXON_MRNA:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2:ENST00000399017.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	54	2	2.17119	3.523585	4.87598	0.0768574	0.0637569	0.184651	0.174882
chr3	51664707	51664806	1472187	0	+	0.434343	(0.419,0.45]	chr3	157989	14	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.17119	3.523585	4.87598	0.0768574	0.0637569	0.184651	0.174882
chr7	47349942	47350042	3587290	0	-	0.47	(0.45,0.485]	chr7	346030	32	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	103	2	3.28219	3.52338	3.76457	0.0334207	0.00463252	0.12421	0.0408278
chr1	31577762	31577860	81021	0	+	0.520408	(0.485,0.523]	chr1	9275	1	SS5_PROX	SS5_PROX:INTRON	LINC01226:TINAGL1	ENSG00000284543.1:ENSG00000142910.16	ENST00000639839.1:ENST00000640226.1:ENST00000457433.6:ENST00000271064.12:ENST00000461030.5:ENST00000478398.5:ENST00000481165.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	3	88	2	2.14677	3.522735	4.8987	0.0733061	0.0129327	0.17026	0.0778105
chr1	150811346	150811443	587047	0	-	0.371134	(0.36,0.39]	chr1	67832	18	UTR3	UTR3:EXON_MRNA	ARNT	ENSG00000143437.21	ENST00000358595.10:ENST00000471844.6:ENST00000354396.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	39	2	2.48379	3.522275	4.56076	0.103289	0.0714535	0.198579	0.197541
chr11	33139877	33139975	5022382	0	-	0.377551	(0.36,0.39]	chr11	485801	33	INTRON	INTRON	CSTF3	ENSG00000176102.13	ENST00000323959.9:ENST00000524827.6:ENST00000526480.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	39	2	2.48379	3.522275	4.56076	0.103289	0.0714535	0.198579	0.197541
chr2	26363502	26363602	732906	0	+	0.39	(0.36,0.39]	chr2	85347	168	INTRON	INTRON	SELENOI	ENSG00000138018.19	ENST00000442141.5:ENST00000260585.12:ENST00000447170.1	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.48379	3.522275	4.56076	0.103289	0.0714535	0.198579	0.197541
chr9	70334543	70334643	4166619	0	+	0.38	(0.36,0.39]	chr9	396017	100	INTRON	INTRON	SMC5	ENSG00000198887.9	ENST00000361138.7:ENST00000475540.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.48379	3.522275	4.56076	0.103289	0.0714535	0.198579	0.197541
chrX	133974885	133974985	8115917	0	-	0.35	(0.33,0.36]	chrX	845535	213	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	106	2	2.92813	3.5221099999999996	4.11609	0.0577575	0.00205621	0.154343	0.0235218
chr11	68332072	68332172	4882278	0	+	0.57	(0.523,0.58]	chr11	470542	189	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	139	2	3.04117	3.5218700000000003	4.00257	0.0092178	0.00879505	0.0644666	0.0615125
chr8	73723032	73723132	3999104	0	-	0.54	(0.523,0.58]	chr8	382519	135	INTRON	INTRON	STAU2:ENSG00000258677	ENSG00000040341.18:ENSG00000258677.2	ENST00000524300.6:ENST00000522695.5:ENST00000523558.5:ENST00000521210.5:ENST00000355780.9:ENST00000519961.5:ENST00000521727.5:ENST00000521451.5:ENST00000522509.5:ENST00000517542.5:ENST00000518981.5:ENST00000518767.5:ENST00000518502.5:ENST00000521293.5:ENST00000521447.5:ENST00000524104.5:ENST00000522962.5:ENST00000521419.5:ENST00000524191.5:ENST00000524113.5:ENST00000520945.5:ENST00000521736.5:ENST00000521845.5:ENST00000520872.5:ENST00000358757.5:ENST00000519818.5:ENST00000522061.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	106	2	3.35934	3.521635	3.68393	0.0162298	0.0113252	0.0873195	0.071894
chr11	96075995	96076095	5110895	0	-	0.32	(0.29,0.33]	chr11	496560	839	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6:ENST00000618849.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.61502	3.5211449999999997	4.42727	0.083721	0.0335282	0.181508	0.133139
chr16	89307636	89307736	6659888	0	-	0.68	(0.58,1]	chr16	666665	19	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1:ENST00000647539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	2.21459	3.5210600000000003	4.82753	0.0487458	0.0427798	0.160725	0.13762
chr10	74160831	74160931	4511776	0	+	0.38	(0.36,0.39]	chr10	431901	91	INTRON	INTRON	ADK	ENSG00000156110.15	ENST00000672429.1:ENST00000539909.6:ENST00000286621.7:ENST00000478611.2:ENST00000673352.1	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.15686	3.52093	4.885	0.0697729	0.0642245	0.184676	0.167185
chr19	40273745	40273844	7379712	0	-	0.555556	(0.523,0.58]	chr19	765692	31	INTRON	INTRON	AKT2	ENSG00000105221.18	ENST00000392038.7:ENST00000424901.5:ENST00000391844.8:ENST00000584288.5:ENST00000579047.5:ENST00000537834.5:ENST00000487537.3:ENST00000486368.6:ENST00000596634.5:ENST00000452077.5:ENST00000578123.5:ENST00000672890.1:ENST00000423127.5:ENST00000358335.9:ENST00000456441.5:ENST00000583859.5:ENST00000416994.6:ENST00000498350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	50	2	2.70025	3.520715	4.34118	0.0763549	0.0372357	0.174544	0.139793
chr11	73056540	73056639	5073120	0	-	0.282828	[0,0.29]	chr11	493647	403	INTRON	INTRON	FCHSD2	ENSG00000137478.15	ENST00000409418.9:ENST00000311172.11:ENST00000409314.5:ENST00000458644.6:ENST00000409853.5:ENST00000422375.1	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.35245	3.5205	4.68855	0.0554735	0.0395239	0.154188	0.143388
chr6	158627518	158627615	3064582	0	+	0.628866	(0.58,1]	chr6	297758	14	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	7	201	2	2.20841	3.5200199999999997	4.83163	0.036103	1.31533e-4	0.127853	0.00335491
chr5	139653563	139653662	2549696	0	+	0.525253	(0.523,0.58]	chr5	253168	20	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	2	99	2	3.22074	3.51942	3.8181	0.0350559	0.0037097	0.12704	0.0349741
chr16	85437316	85437416	6517444	0	+	0.44	(0.419,0.45]	chr16	646391	780	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.65059	3.5193149999999997	4.38804	0.0917577	0.0451818	0.188571	0.154539
chr20	63729823	63729923	7509337	0	+	0.51	(0.485,0.523]	chr20	783515	203	INTRON	INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.53228	3.51931	4.50634	0.0939553	0.0614918	0.188571	0.18013
chr3	66007192	66007290	1815553	0	-	0.510204	(0.485,0.523]	chr3	187316	34	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.45723	3.519115	4.581	0.085711	0.0700289	0.195209	0.181766
chr7	47388305	47388405	3587675	0	-	0.52	(0.485,0.523]	chr7	346036	183	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	37	2	2.45723	3.519115	4.581	0.085711	0.0700289	0.195209	0.181766
chr2	11183940	11184038	1087754	0	-	0.306122	(0.29,0.33]	chr2	118582	1	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000401753.5	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.45052	3.519105	4.58769	0.0806047	0.0341666	0.177452	0.134436
chr1	2242920	2243019	4640	0	+	0.454545	(0.45,0.485]	chr1	1048	99	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	2.14074	3.518795	4.89685	0.0632663	0.0614781	0.183518	0.158506
chr3	78981915	78982015	1837325	0	-	0.38	(0.36,0.39]	chr3	188611	426	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	3	153	2	3.10214	3.51877	3.9354	0.0248387	0.00347533	0.10758	0.0336331
chr7	1071981	1072081	3526947	0	-	0.68	(0.58,1]	chr7	340585	168	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	42	2	2.45703	3.5186400000000004	4.58025	0.0933945	0.0172566	0.188571	0.0923809
chr6	1923404	1923504	3082107	0	-	0.56	(0.523,0.58]	chr6	299482	1805	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	60	2	1.86691	3.5183	5.16969	0.0717156	0.0387762	0.199212	0.131324
chr4	183123415	183123515	2167635	0	+	0.31	(0.29,0.33]	chr4	219488	234	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000508614.5:ENST00000448232.6:ENST00000513834.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	136	2	2.94754	3.51828	4.08902	0.026488	0.00192547	0.111143	0.022451
chr8	17565343	17565442	3763700	0	+	0.383838	(0.36,0.39]	chr8	361565	3	UTR3	UTR3:EXON_MRNA	SLC7A2	ENSG00000003989.18	ENST00000494857.6:ENST00000470360.5:ENST00000004531.14:ENST00000398090.3	protein_coding	protein_coding	protein_coding	protein_coding	7	339	2	3.22939	3.5178149999999997	3.80624	0.0117402	8.46577e-4	0.0737098	0.0126483
chr2	31872142	31872242	1115557	0	-	0.32	(0.29,0.33]	chr2	122032	18	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000422936.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	2.12311	3.51764	4.91217	0.0522244	0.0443831	0.153511	0.148503
chr6	100577745	100577845	3210697	0	-	0.4	(0.39,0.419]	chr6	311822	370	INTRON	INTRON	ASCC3	ENSG00000112249.14	ENST00000369162.7	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.33678	3.51738	4.69798	0.088901	0.0461697	0.183874	0.155334
chr16	81483170	81483270	6508123	0	+	0.51	(0.485,0.523]	chr16	645906	373	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	8	387	2	3.2332	3.51715	3.8011	0.00312221	0.00213911	0.0356998	0.0240825
chr20	62960303	62960403	7508300	0	+	0.63	(0.58,1]	chr20	783181	4	SS3_PROX	SS3_PROX:INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	189	2	3.47207	3.516925	3.56178	0.00626219	0.00111103	0.0523832	0.0152496
chr17	29083134	29083233	6875931	0	-	0.606061	(0.58,1]	chr17	697789	3	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000529578.5:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000546105.5:ENST00000527312.5:ENST00000531438.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	46	2	2.02776	3.5168049999999997	5.00585	0.0700362	0.0323732	0.195209	0.121593
chr17	77475619	77475714	6805135	0	+	0.610526	(0.58,1]	chr17	686811	5	UTR5	UTR5:EXON_MRNA:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	46	2	2.02776	3.5168049999999997	5.00585	0.0700362	0.0323732	0.195209	0.121593
chr7	92665342	92665442	3637250	0	-	0.25	[0,0.29]	chr7	350304	232	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	2.03387	3.5165550000000003	4.99924	0.0393584	0.0347661	0.143383	0.126529
chr10	18557467	18557567	4642303	0	-	0.41	(0.39,0.419]	chr10	443321	51	INTRON	INTRON	NSUN6	ENSG00000241058.4	ENST00000377304.7	protein_coding	protein_coding	protein_coding	protein_coding	1	54	2	2.73134	3.5164549999999997	4.30157	0.0798958	0.0496288	0.177037	0.160725
chr3	12964606	12964705	1688775	0	-	0.464646	(0.45,0.485]	chr3	176520	36	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	165	2	3.1899	3.5164400000000002	3.84298	0.0131965	0.00376725	0.0785449	0.0353672
chr19	55266286	55266386	7407580	0	-	0.54	(0.523,0.58]	chr19	771324	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	HSPBP1	ENSG00000133265.11	ENST00000433386.7:ENST00000255631.9:ENST00000587922.5:ENST00000585927.1:ENST00000587959.1	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	1.91169	3.516095	5.1205	0.0659513	0.0416463	0.189025	0.136301
chr2	237577825	237577914	1388022	0	-	0.561798	(0.523,0.58]	chr2	148323	6	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAB17	ENSG00000124839.13	ENST00000392001.6:ENST00000264601.8:ENST00000477149.5:ENST00000409576.1:ENST00000414278.1:ENST00000409822.1:ENST00000411462.5:ENST00000430445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	81	2	2.69087	3.516025	4.34118	0.0422993	0.0372357	0.139793	0.13762
chr2	240626165	240626262	1075205	0	+	0.659794	(0.58,1]	chr2	116658	2	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2:ENST00000407714.2	protein_coding	protein_coding	protein_coding	protein_coding	5	195	2	3.23167	3.51586	3.80005	0.0037835	0.00227861	0.0396337	0.025238
chr2	202267080	202267179	993822	0	+	0.434343	(0.419,0.45]	chr2	109183	7	INTRON	INTRON	NOP58	ENSG00000055044.11	ENST00000488403.5:ENST00000426814.5:ENST00000264279.10:ENST00000472050.5:ENST00000492740.5:ENST00000467734.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	112	2	2.91455	3.51564	4.1167299999999996	0.06467	0.00235149	0.162218	0.0258525
chr7	6701897	6701995	3542732	0	-	0.27551	[0,0.29]	chr7	342318	11	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.20977	3.515365	4.82096	0.0456837	0.0350847	0.142336	0.137267
chr2	239347781	239347881	1392188	0	-	0.49	(0.485,0.523]	chr2	148752	233	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	99	2	3.22297	3.51491	3.80685	0.0348463	0.00388927	0.126697	0.0363508
chr10	48039940	48040039	4680765	0	-	0.484848	(0.45,0.485]	chr10	446508	5	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	2	51	2	2.19184	3.514695	4.83755	0.06646	0.0575893	0.17499	0.162385
chr4	103065013	103065112	2296073	0	-	0.484848	(0.45,0.485]	chr4	230898	67	INTRON	INTRON	SLC9B2	ENSG00000164038.16	ENST00000362026.7:ENST00000394785.9:ENST00000503103.5:ENST00000503230.5:ENST00000515424.5:ENST00000503818.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	2.19184	3.514695	4.83755	0.06646	0.0575893	0.17499	0.162385
chr6	166955996	166956096	3302055	0	-	0.65	(0.58,1]	chr6	319757	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000358165.7:ENST00000683158.1:ENST00000683333.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	541	2	3.25332	3.51463	3.77594	0.0120565	0.00102305	0.0754623	0.0192127
chr8	128033366	128033465	3920213	0	+	0.454545	(0.45,0.485]	chr8	374311	7	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1	lncRNA	lncRNA	lncRNA	lncRNA	2	108	2	2.65647	3.5143199999999997	4.37217	0.0837071	9.45601e-4	0.181508	0.0136002
chr11	121577800	121577900	4954937	0	+	0.37	(0.36,0.39]	chr11	478804	4	SS5_PROX	SS5_PROX:INTRON	SORL1	ENSG00000137642.13	ENST00000260197.12:ENST00000525532.5:ENST00000532694.5:ENST00000534286.5	protein_coding	protein_coding	protein_coding	protein_coding	1	58	2	2.93677	3.514315	4.09186	0.0687088	0.0598652	0.193274	0.158491
chr1	236560237	236560337	694582	0	-	0.3	(0.29,0.33]	chr1	81763	4	SS3_PROX	SS3_PROX:INTRON	HEATR1	ENSG00000119285.11	ENST00000366582.8:ENST00000366581.6	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.51537	3.51419	4.51301	0.0885563	0.0639396	0.184676	0.183874
chr12	120876707	120876806	5524051	0	-	0.292929	(0.29,0.33]	chr12	544174	412	INTRON	INTRON	SPPL3	ENSG00000157837.16	ENST00000353487.7:ENST00000536996.5:ENST00000543608.5:ENST00000543854.5	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.51537	3.51419	4.51301	0.0885563	0.0639396	0.184676	0.183874
chr6	144399226	144399326	3021003	0	+	0.33	(0.29,0.33]	chr6	295148	546	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1:ENST00000628146.2:ENST00000421035.2	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.44033	3.51401	4.58769	0.0806047	0.072701	0.199502	0.177452
chr17	316332	316431	6821439	0	-	0.555556	(0.523,0.58]	chr17	689582	98	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	184	2	3.39923	3.514005	3.62878	0.0126065	0.00190634	0.0761905	0.0222954
chr22	48695174	48695274	7751219	0	+	0.45	(0.419,0.45]	chr22	812283	14	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000402357.6:ENST00000336769.9:ENST00000358295.9:ENST00000473898.1:ENST00000406880.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	60	2	2.94439	3.513815	4.08324	0.0727147	0.062072	0.199502	0.15958
chr7	75919201	75919298	3396645	0	+	0.329897	(0.29,0.33]	chr7	328048	1	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	50	2	2.11496	3.513565	4.91217	0.0654138	0.0522244	0.187657	0.148503
chr2	187533464	187533564	1343326	0	-	0.41	(0.39,0.419]	chr2	142497	36	INTRON	INTRON	TFPI	ENSG00000003436.16	ENST00000233156.9:ENST00000409676.5:ENST00000339091.8:ENST00000421427.5:ENST00000437725.5:ENST00000453013.5:ENST00000417013.5:ENST00000420747.1	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.20247	3.51343	4.82439	0.0762206	0.0592353	0.176157	0.174484
chr19	2203868	2203967	7188897	0	+	0.666667	(0.58,1]	chr19	731581	7	INTRON	INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	2	89	2	3.48503	3.512815	3.5406	0.0154024	0.006811	0.0849828	0.0524379
chr3	195241694	195241794	1982443	0	-	0.47	(0.45,0.485]	chr3	201717	145	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000429994.5:ENST00000418940.5:ENST00000494175.1:ENST00000455281.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	110	2	2.57593	3.512665	4.4494	0.093234	7.63833e-4	0.188571	0.0117723
chr20	6016450	6016549	7425782	0	+	0.555556	(0.523,0.58]	chr20	773609	5	INTRON	INTRON	CRLS1	ENSG00000088766.12	ENST00000452938.5:ENST00000378863.9:ENST00000378868.4:ENST00000489345.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	252	2	2.8029	3.5124050000000002	4.22191	0.0207442	3.46341e-4	0.0988299	0.00673458
chr17	17822717	17822817	6865748	0	-	0.56	(0.523,0.58]	chr17	695915	18	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	104	2	3.4003	3.5117700000000003	3.62324	0.0180195	0.0103016	0.0921579	0.0678983
chr19	38648859	38648959	7257852	0	+	0.49	(0.485,0.523]	chr19	743980	2	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	50	2	2.23742	3.51084	4.78426	0.0660335	0.0515447	0.165949	0.162385
chr10	3779439	3779538	4621644	0	-	0.606061	(0.58,1]	chr10	441655	36	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KLF6	ENSG00000067082.15	ENST00000497571.6:ENST00000461124.1:ENST00000542957.1:ENST00000173785.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.47204	3.510655	4.54927	0.0643046	0.0623526	0.181127	0.161669
chr17	38704148	38704247	6729099	0	+	0.666667	(0.58,1]	chr17	676275	18	EXON_LNCRNA	EXON_LNCRNA	ENSG00000277969	ENSG00000277969.1	ENST00000612330.1	lncRNA	lncRNA	lncRNA	lncRNA	1	34	2	2.47204	3.510655	4.54927	0.0643046	0.0623526	0.181127	0.161669
chr19	1289983	1290082	7186904	0	+	0.666667	(0.58,1]	chr19	731132	33	INTRON	INTRON	EFNA2	ENSG00000099617.4	ENST00000215368.4	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.47204	3.510655	4.54927	0.0643046	0.0623526	0.181127	0.161669
chr7	47525136	47525236	3589064	0	-	0.63	(0.58,1]	chr7	346138	178	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.47204	3.510655	4.54927	0.0643046	0.0623526	0.181127	0.161669
chr9	136826226	136826326	4262671	0	+	0.67	(0.58,1]	chr9	406660	4	SS5_PROX	SS5_PROX:INTRON	RABL6	ENSG00000196642.19	ENST00000371671.9:ENST00000311502.12:ENST00000484471.6:ENST00000371663.10:ENST00000357466.6:ENST00000464941.5:ENST00000629216.2:ENST00000436380.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	34	2	2.47204	3.510655	4.54927	0.0643046	0.0623526	0.181127	0.161669
chr11	57500378	57500478	5038777	0	-	0.44	(0.419,0.45]	chr11	488208	2	SS5_PROX	SS5_PROX:INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	184	2	3.48084	3.510405	3.53997	0.0283681	0.00186879	0.114796	0.0219434
chr15	24985410	24985509	6063699	0	+	0.484848	(0.45,0.485]	chr15	595387	31	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	4	193	2	3.48907	3.51037	3.53167	0.0115648	0.00274232	0.0730568	0.028553
chr16	81615906	81616005	6509455	0	+	0.59596	(0.58,1]	chr16	645921	50	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	121	2	2.97017	3.5096049999999996	4.04904	0.00858469	0.0056478	0.0612699	0.0495171
chr16	87491168	87491268	6656007	0	-	0.75	(0.58,1]	chr16	665822	1	SS5_PROX	SS5_PROX:INTRON	ZCCHC14	ENSG00000140948.13	ENST00000268616.9:ENST00000671377.2:ENST00000568020.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	72	2	1.9335	3.5094200000000004	5.08534	0.0870471	0.00549379	0.182758	0.0454065
chr3	58131648	58131740	1484305	0	+	0.456522	(0.45,0.485]	chr3	159714	9	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	FLNB	ENSG00000136068.16	ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000493452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	249	2	3.48715	3.50941	3.53167	0.00802595	0.00274232	0.0598993	0.028553
chr11	9289928	9290027	4990952	0	-	0.393939	(0.39,0.419]	chr11	483068	10	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	147	2	2.72652	3.50916	4.2918	0.0452803	0.00141198	0.141916	0.0180814
chr2	11335401	11335500	1089309	0	-	0.343434	(0.33,0.36]	chr2	118747	473	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	144	2	2.45054	3.5086	4.56666	0.0644678	6.15411e-4	0.162066	0.0101143
chr8	102395189	102395289	4032014	0	-	0.44	(0.419,0.45]	chr8	385211	332	INTRON	INTRON	UBR5	ENSG00000104517.13	ENST00000520539.6:ENST00000220959.8:ENST00000521922.5	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.26209	3.508495	4.7549	0.0888907	0.0541225	0.183874	0.167824
chr2	70063099	70063196	1178616	0	-	0.453608	(0.45,0.485]	chr2	128232	31	INTRON	INTRON	PCBP1-AS1	ENSG00000179818.16	ENST00000419542.5:ENST00000682294.1:ENST00000684630.1:ENST00000630975.3:ENST00000435880.6:ENST00000629339.3:ENST00000667874.1:ENST00000628659.2:ENST00000628308.2:ENST00000626515.2:ENST00000625447.2:ENST00000628305.2:ENST00000625625.2:ENST00000625864.2:ENST00000630522.2:ENST00000629084.2:ENST00000629603.2:ENST00000625215.2:ENST00000627189.2:ENST00000629836.2:ENST00000626898.2:ENST00000628883.2:ENST00000629533.2:ENST00000627181.2:ENST00000630214.2:ENST00000627918.2:ENST00000628374.2:ENST00000627327.2:ENST00000626495.2:ENST00000629605.2:ENST00000626370.2:ENST00000626842.2:ENST00000630457.2:ENST00000629184.2:ENST00000628551.2:ENST00000630746.2:ENST00000627398.2:ENST00000457076.5:ENST00000625783.2:ENST00000625490.2:ENST00000627050.2:ENST00000630759.2:ENST00000628667.2:ENST00000626632.2:ENST00000631110.2:ENST00000626609.2:ENST00000629506.2:ENST00000630985.2:ENST00000413436.5:ENST00000628147.2:ENST00000631107.2:ENST00000629415.2:ENST00000418564.5:ENST00000415222.5:ENST00000628322.2:ENST00000665708.1:ENST00000655086.1:ENST00000420309.6:ENST00000627487.3:ENST00000670036.1:ENST00000655096.1:ENST00000685127.1:ENST00000684907.1:ENST00000685079.1:ENST00000687866.1:ENST00000692564.1:ENST00000686517.1:ENST00000689138.1:ENST00000688056.1:ENST00000692333.1:ENST00000688045.1:ENST00000657291.1:ENST00000691987.1:ENST00000664483.1:ENST00000601431.6:ENST00000685803.1:ENST00000690200.1:ENST00000686800.1:ENST00000684857.1:ENST00000627037.2:ENST00000688473.1:ENST00000456161.5:ENST00000627074.2:ENST00000419963.5:ENST00000625227.2:ENST00000599673.5:ENST00000629407.2:ENST00000418308.5:ENST00000630283.2:ENST00000629178.2:ENST00000627542.2:ENST00000626574.2:ENST00000596028.5:ENST00000629485.2:ENST00000630685.2:ENST00000452431.5:ENST00000629374.2:ENST00000423402.5:ENST00000411429.5:ENST00000629188.2:ENST00000434781.5:ENST00000626162.2:ENST00000654878.1:ENST00000659586.1:ENST00000457770.6:ENST00000415742.5:ENST00000627540.2:ENST00000628263.2:ENST00000657575.2:ENST00000689275.1:ENST00000687961.1:ENST00000416395.6:ENST00000692733.1:ENST00000654336.1:ENST00000686055.1:ENST00000626509.3:ENST00000425601.6:ENST00000653064.1:ENST00000656326.1:ENST00000668711.1:ENST00000665172.1:ENST00000630520.3:ENST00000663209.1:ENST00000659305.1:ENST00000654601.1:ENST00000663375.1:ENST00000654958.1:ENST00000665838.1:ENST00000653606.1:ENST00000659941.1:ENST00000669583.1:ENST00000660903.1:ENST00000653596.1:ENST00000656308.1:ENST00000449178.6:ENST00000625955.3:ENST00000655140.1:ENST00000661989.1:ENST00000664419.1:ENST00000670785.1:ENST00000661703.1:ENST00000658454.1:ENST00000664049.1:ENST00000655058.1:ENST00000366234.7:ENST00000597318.5:ENST00000625518.2:ENST00000425333.5:ENST00000429599.6:ENST00000432604.5:ENST00000421843.5:ENST00000458686.5:ENST00000421255.5:ENST00000413069.5:ENST00000685037.1:ENST00000458698.6:ENST00000670786.1:ENST00000657164.1:ENST00000665264.1:ENST00000413791.5:ENST00000690464.1:ENST00000690924.1:ENST00000688311.1:ENST00000691287.1:ENST00000655481.1:ENST00000655420.1:ENST00000612202.5:ENST00000666167.1:ENST00000664958.1:ENST00000416068.6:ENST00000653289.1:ENST00000653811.1:ENST00000661863.1:ENST00000659531.1:ENST00000667307.1:ENST00000437019.2:ENST00000666074.1:ENST00000654716.1:ENST00000439670.6:ENST00000669812.1:ENST00000660404.2:ENST00000656852.1:ENST00000670845.1:ENST00000669570.1:ENST00000422515.6:ENST00000653114.1:ENST00000667952.1:ENST00000662224.1:ENST00000664533.1:ENST00000670313.1:ENST00000626558.3:ENST00000670974.1:ENST00000664014.1:ENST00000668191.1:ENST00000609543.6:ENST00000664754.1:ENST00000662103.1:ENST00000669896.1:ENST00000629943.3:ENST00000625788.3:ENST00000663033.1:ENST00000442040.5:ENST00000627155.2:ENST00000601396.5:ENST00000629825.2:ENST00000444410.5:ENST00000444320.5:ENST00000630377.2:ENST00000662425.1:ENST00000688278.1:ENST00000596573.5:ENST00000594548.5:ENST00000601395.1:ENST00000437456.5:ENST00000595459.5:ENST00000415060.6:ENST00000596665.5:ENST00000625257.2:ENST00000627528.2:ENST00000630206.2:ENST00000628102.2:ENST00000439892.6:ENST00000609075.5:ENST00000628757.2	lncRNA	lncRNA	lncRNA	lncRNA	2	51	2	2.24119	3.50845	4.77571	0.0719884	0.0525018	0.168159	0.167062
chr8	17548077	17548177	3763516	0	+	0.55	(0.523,0.58]	chr8	361508	31	INTRON	INTRON	SLC7A2	ENSG00000003989.18	ENST00000494857.6:ENST00000522656.5:ENST00000470360.5:ENST00000004531.14:ENST00000398090.3:ENST00000640220.1	protein_coding	protein_coding	protein_coding	protein_coding	1	51	2	2.77655	3.50814	4.23973	0.0685533	0.0444247	0.165066	0.153511
chr7	79439738	79439838	3626397	0	-	0.34	(0.33,0.36]	chr7	349238	237	INTRON	INTRON	MAGI2	ENSG00000187391.22	ENST00000354212.9:ENST00000419488.5:ENST00000637441.1:ENST00000522391.3:ENST00000628997.1:ENST00000636234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	38	2	2.51922	3.50747	4.49572	0.103264	0.0659899	0.197541	0.189025
chr16	81686495	81686594	6510176	0	+	0.525253	(0.523,0.58]	chr16	645979	75	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	1	47	2	2.48975	3.507325	4.5249	0.101574	0.0266135	0.196431	0.118113
chr3	9464932	9465026	1402806	0	+	0.382979	(0.36,0.39]	chr3	150226	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000406341.5:ENST00000670063.1:ENST00000684055.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000691988.1:ENST00000466242.5:ENST00000682236.1:ENST00000488236.5:ENST00000421188.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	53	2	2.25073	3.5073149999999997	4.7639	0.0811309	0.054166	0.177951	0.167824
chr9	114156806	114156905	4225713	0	+	0.676768	(0.58,1]	chr9	400740	4	INTRON	INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8	protein_coding	protein_coding	protein_coding	protein_coding	2	86	2	3.02751	3.5069049999999997	3.9863	0.0385189	0.0017591	0.131324	0.0211077
chr11	65504432	65504531	4871988	0	+	0.393939	(0.39,0.419]	chr11	468193	69	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000616527.4:ENST00000620465.4:ENST00000612781.1:ENST00000618132.1:ENST00000613376.1:ENST00000610851.1	lncRNA	lncRNA	lncRNA	lncRNA	416	17155	2	3.49096	3.50689	3.52282	0.00299184	2.46443e-4	0.0348875	0.00525243
chr11	65444940	65445040	4871791	0	+	0.42	(0.419,0.45]	chr11	468177	223	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	57	2649	2	3.47481	3.506765	3.53872	0.00430611	3.10948e-4	0.0425023	0.00624487
chr3	172067317	172067417	1627740	0	+	0.4	(0.39,0.419]	chr3	170535	200	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	175	2	2.99201	3.506475	4.02094	0.0110283	0.00708733	0.0709194	0.0540942
chr17	43546314	43546414	6739028	0	+	0.69	(0.58,1]	chr17	678633	11	INTRON	INTRON	DHX8	ENSG00000067596.12	ENST00000650571.1:ENST00000588996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	3	117	2	2.58616	3.506125	4.42609	0.0406424	4.76485e-4	0.135868	0.008444
chr17	46170757	46170854	6917608	0	-	0.391753	(0.39,0.419]	chr17	704574	6	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2:ENST00000639356.1:ENST00000574655.6:ENST00000639099.1:ENST00000638902.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	53	2	2.24864	3.505605	4.76257	0.0822354	0.0544427	0.179396	0.167824
chr2	54571680	54571780	799431	0	+	0.38	(0.36,0.39]	chr2	90800	124	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7:ENST00000333896.5	protein_coding	protein_coding	protein_coding	protein_coding	3	148	2	2.46341	3.50554	4.54767	0.066299	7.11752e-4	0.162385	0.0112082
chr14	19303620	19303718	5928398	0	-	0.581633	(0.58,1]	chr14	580401	51	EXON_LNCRNA	EXON_LNCRNA:INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	10	357	2	3.44807	3.503565	3.55906	0.00388173	3.07962e-4	0.0401804	0.00619858
chr16	30002489	30002576	6436088	0	+	0.609195	(0.58,1]	chr16	637271	1	UTR3	UTR3:EXON_MRNA:INTRON	INO80E	ENSG00000169592.15	ENST00000304516.11:ENST00000569957.5:ENST00000563197.6:ENST00000562441.5:ENST00000567065.5:ENST00000567705.5:ENST00000567987.5:ENST00000540562.1:ENST00000562291.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	34	2	2.38295	3.50349	4.62403	0.0730701	0.0578275	0.199669	0.154343
chr17	2400107	2400207	6835413	0	-	0.63	(0.58,1]	chr17	691320	4	SS5_PROX	SS5_PROX:INTRON	MNT	ENSG00000070444.15	ENST00000174618.5:ENST00000575394.1:ENST00000574559.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.38295	3.50349	4.62403	0.0730701	0.0578275	0.199669	0.154343
chr2	10188606	10188706	718187	0	+	0.62	(0.58,1]	chr2	84002	325	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000381786.7	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	1	34	2	2.38295	3.50349	4.62403	0.0730701	0.0578275	0.199669	0.154343
chr3	13020336	13020435	1689339	0	-	0.616162	(0.58,1]	chr3	176537	254	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.38295	3.50349	4.62403	0.0730701	0.0578275	0.199669	0.154343
chr6	3346369	3346469	3086953	0	-	0.6	(0.58,1]	chr6	299774	220	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000496753.1:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	34	2	2.38295	3.50349	4.62403	0.0730701	0.0578275	0.199669	0.154343
chr9	129611069	129611168	4250941	0	+	0.676768	(0.58,1]	chr9	404743	15	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	1	34	2	2.38295	3.50349	4.62403	0.0730701	0.0578275	0.199669	0.154343
chr9	134411998	134412097	4261553	0	+	0.636364	(0.58,1]	chr9	406352	25	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000481739.2:ENST00000356384.4:ENST00000672570.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	34	2	2.38295	3.50349	4.62403	0.0730701	0.0578275	0.199669	0.154343
chr16	81616104	81616204	6509457	0	+	0.39	(0.36,0.39]	chr16	645921	52	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	107	2	3.29013	3.5031499999999998	3.71617	0.0356209	0.00589796	0.127588	0.0477093
chr11	70578929	70579029	5060062	0	-	0.59	(0.58,1]	chr11	492663	756	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	43	2	2.61009	3.503145	4.3962	0.0747426	0.0250928	0.172361	0.114418
chr6	43050867	43050967	3135538	0	-	0.59	(0.58,1]	chr6	305973	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CUL7	ENSG00000044090.13	ENST00000265348.9:ENST00000690231.1:ENST00000685042.1:ENST00000689256.1:ENST00000674112.2:ENST00000674134.1:ENST00000674100.1:ENST00000686442.1:ENST00000688302.1:ENST00000673753.1:ENST00000687225.1:ENST00000688707.1:ENST00000683493.1:ENST00000683160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	43	2	2.61009	3.503145	4.3962	0.0747426	0.0250928	0.172361	0.114418
chr12	15780727	15780826	5380408	0	-	0.393939	(0.39,0.419]	chr12	527517	1	INTRON	INTRON	EPS8	ENSG00000151491.14	ENST00000281172.10:ENST00000543523.5:ENST00000543468.5:ENST00000644374.1:ENST00000646918.1:ENST00000645775.1:ENST00000642939.1:ENST00000646828.1:ENST00000647224.1:ENST00000642278.1:ENST00000646123.1:ENST00000647087.1:ENST00000536956.5:ENST00000535752.5:ENST00000536793.5:ENST00000544064.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	107	2	3.04731	3.502985	3.95866	0.0514906	0.00329322	0.148503	0.0323365
chr13	113048929	113049028	5656124	0	+	0.686869	(0.58,1]	chr13	555180	17	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	2.18715	3.502885	4.81862	0.0781652	0.0102696	0.175203	0.0678072
chr17	68596196	68596295	6960221	0	-	0.414141	(0.39,0.419]	chr17	709982	55	INTRON	INTRON	FAM20A	ENSG00000108950.12	ENST00000592554.2:ENST00000590074.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	173	2	3.2016	3.50229	3.80298	0.0159069	0.00421595	0.0860271	0.0380856
chr17	61399226	61399321	6939792	0	-	0.757895	(0.58,1]	chr17	707566	3	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	TBX2-AS1	ENSG00000267280.6	ENST00000591313.6:ENST00000590421.1:ENST00000592009.1:ENST00000589814.5	lncRNA	lncRNA	lncRNA	lncRNA	2	46	2	2.37998	3.5020050000000005	4.62403	0.0578275	0.0345705	0.154343	0.135397
chr21	44867823	44867922	7678520	0	-	0.323232	(0.29,0.33]	chr21	802773	18	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	233	2	3.24556	3.5019299999999998	3.7583	0.0151115	0.0039889	0.085778	0.0409162
chr5	150028491	150028588	2564133	0	+	0.257732	[0,0.29]	chr5	254732	10	INTRON	INTRON	HMGXB3	ENSG00000113716.13	ENST00000613459.4:ENST00000503427.5:ENST00000502717.6:ENST00000514469.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	279	2	3.31553	3.5011349999999997	3.68674	0.00327089	0.00149044	0.0366738	0.018729
chr12	6339988	6340087	5362107	0	-	0.565657	(0.523,0.58]	chr12	525042	54	INTRON	INTRON	TNFRSF1A	ENSG00000067182.8	ENST00000534885.5:ENST00000162749.7:ENST00000543995.5:ENST00000540022.5:ENST00000539372.5:ENST00000366159.8:ENST00000543048.5:ENST00000440083.6:ENST00000536194.1:ENST00000535958.1:ENST00000538363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	135	2	3.09806	3.5010149999999998	3.90397	0.0110124	0.00764666	0.0708586	0.0563517
chr4	186283115	186283210	2173828	0	+	0.452632	(0.45,0.485]	chr4	220288	12	INTRON	INTRON	F11	ENSG00000088926.14	ENST00000403665.7:ENST00000264692.8	protein_coding	protein_coding	protein_coding	protein_coding	2	101	2	3.14934	3.50092	3.8525	0.0410767	0.00372052	0.136301	0.0350519
chr8	22374330	22374430	3770091	0	+	0.55	(0.523,0.58]	chr8	362721	62	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	10	423	2	3.00489	3.50092	3.99695	0.0124627	1.61229e-4	0.0761905	0.00387712
chr17	14400669	14400769	6683543	0	+	0.38	(0.36,0.39]	chr17	670768	31	INTRON	INTRON	ENSG00000230647	ENSG00000230647.2	ENST00000436469.1:ENST00000655690.1	lncRNA	lncRNA	lncRNA	lncRNA	5	240	2	3.10214	3.5008299999999997	3.89952	0.0248387	6.53544e-4	0.10758	0.0105579
chr12	7156278	7156371	5167912	0	+	0.602151	(0.58,1]	chr12	502929	1	CDS	CDS:EXON_MRNA:INTRON	CLSTN3	ENSG00000139182.15	ENST00000266546.11:ENST00000537408.1:ENST00000535313.2:ENST00000331148.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	42	2	2.50987	3.500515	4.49116	0.0865901	0.0207449	0.182221	0.102713
chr7	47472011	47472110	3588528	0	-	0.606061	(0.58,1]	chr7	346123	189	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.50987	3.500515	4.49116	0.0865901	0.0207449	0.182221	0.102713
chr16	29266715	29266815	6433504	0	+	0.5	(0.485,0.523]	chr16	636745	146	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	1	49	2	2.66276	3.50024	4.33772	0.0803133	0.03818	0.177452	0.140822
chr3	136300529	136300629	1574584	0	+	0.47	(0.45,0.485]	chr3	167003	1	SS3_PROX	SS3_PROX:INTRON	PCCB	ENSG00000114054.14	ENST00000251654.9:ENST00000490504.5:ENST00000483687.5:ENST00000468777.5:ENST00000462637.5:ENST00000466072.5:ENST00000484181.5:ENST00000482086.5:ENST00000471595.5:ENST00000469217.5:ENST00000478469.5:ENST00000474833.5:ENST00000475214.5:ENST00000473073.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	2.28891	3.500005	4.7111	0.0781398	0.0479351	0.175203	0.159092
chr19	34388796	34388895	7243238	0	+	0.575758	(0.523,0.58]	chr19	741718	68	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	88	2	2.16546	3.4998500000000003	4.83424	0.0714042	0.0144272	0.168159	0.0833845
chr8	22386769	22386868	3770216	0	+	0.464646	(0.45,0.485]	chr8	362727	69	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	6	87	2	1.65359	3.4982999999999995	5.34301	0.0690617	0.0328801	0.193565	0.122593
chr10	75885524	75885624	4525024	0	+	0.43	(0.419,0.45]	chr10	432292	16	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.30548	3.4979050000000003	4.69033	0.0958674	0.04996	0.189038	0.161395
chr6	16760797	16760897	3104462	0	-	0.76	(0.58,1]	chr6	300922	1	SS5_PROX	SS5_PROX:INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000473388.6:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1:ENST00000467008.5:ENST00000498374.1:ENST00000492857.1:ENST00000479680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	212	2	3.35429	3.497825	3.64136	0.00530145	0.00102958	0.047841	0.0144685
chr7	74458270	74458369	3391409	0	+	0.555556	(0.523,0.58]	chr7	327343	37	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.09041	3.497705	4.905	0.0674148	0.0563605	0.192827	0.154188
chr2	86153359	86153459	1212830	0	-	0.31	(0.29,0.33]	chr2	130650	4	SS5_PROX	SS5_PROX:INTRON	IMMT	ENSG00000132305.22	ENST00000449247.6:ENST00000254636.9:ENST00000410111.8:ENST00000442664.6:ENST00000419070.6:ENST00000409051.6	protein_coding	protein_coding	protein_coding	protein_coding	2	98	2	2.95538	3.497205	4.03903	0.0510239	0.00219789	0.148503	0.0245235
chr7	127707847	127707947	3468791	0	+	0.28	[0,0.29]	chr7	335369	2	SS5_PROX	SS5_PROX:INTRON	SND1	ENSG00000197157.11	ENST00000354725.8	protein_coding	protein_coding	protein_coding	protein_coding	3	122	2	2.75377	3.49632	4.23887	0.0312536	0.00108555	0.120416	0.0149818
chr7	44529175	44529274	3585286	0	-	0.474747	(0.45,0.485]	chr7	345623	66	INTRON	INTRON	NPC1L1	ENSG00000015520.15	ENST00000381160.8:ENST00000289547.8:ENST00000546276.5	protein_coding	protein_coding	protein_coding	protein_coding	2	118	2	3.03233	3.495505	3.95868	0.0244076	0.0107799	0.113311	0.0705587
chr2	152337719	152337819	925488	0	+	0.36	(0.33,0.36]	chr2	103058	16	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.1553	3.4953399999999997	4.83538	0.0679743	0.0436602	0.164413	0.153045
chr8	130428200	130428300	4083484	0	-	0.36	(0.33,0.36]	chr8	388192	5	INTRON	INTRON	ASAP1	ENSG00000153317.15	ENST00000518721.6:ENST00000357668.2:ENST00000524299.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	2.09481	3.494745	4.89468	0.0702974	0.0629186	0.195709	0.160778
chr9	134342129	134342229	4260844	0	+	0.59	(0.58,1]	chr9	406311	151	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	90	2	3.35051	3.49464	3.63877	0.0127766	0.00953058	0.0769397	0.0650078
chr16	89291899	89291999	6659724	0	-	0.57	(0.523,0.58]	chr16	666647	1	SS3_PROX	SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	179	2	2.94384	3.494485	4.04513	0.0279362	5.84273e-4	0.113476	0.00974635
chr17	77500208	77500305	6805400	0	+	0.536082	(0.523,0.58]	chr17	686872	17	UTR3	UTR3:EXON_MRNA	SEPTIN9	ENSG00000184640.20	ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000423034.6:ENST00000427674.6:ENST00000541152.6:ENST00000427180.5	protein_coding	protein_coding	protein_coding	protein_coding	4	178	2	3.11212	3.49432	3.87652	0.0209632	9.51496e-4	0.0995329	0.0136675
chr12	57151143	57151242	5240631	0	+	0.454545	(0.45,0.485]	chr12	510200	12	INTRON	INTRON	LRP1	ENSG00000123384.14	ENST00000243077.8:ENST00000554174.1	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.49029	3.494075	4.49786	0.101311	0.0676934	0.196131	0.193219
chr16	81677874	81677974	6510089	0	+	0.46	(0.45,0.485]	chr16	645974	2	SS3_PROX	SS3_PROX:INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	1	37	2	2.49029	3.494075	4.49786	0.101311	0.0676934	0.196131	0.193219
chr4	17628350	17628449	2017161	0	+	0.373737	(0.36,0.39]	chr4	206143	28	UTR3	UTR3:EXON_MRNA	MED28	ENSG00000118579.13	ENST00000237380.12	protein_coding	protein_coding	protein_coding	protein_coding	4	195	2	3.04192	3.49352	3.94512	0.0273857	0.00107305	0.112449	0.0148869
chr22	24098282	24098382	7695343	0	+	0.56	(0.523,0.58]	chr22	805515	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	2.48104	3.493485	4.50593	0.094303	0.0313926	0.188571	0.127822
chr22	24098482	24098582	7695345	0	+	0.51	(0.485,0.523]	chr22	805516	2	SS5_PROX	SS5_PROX:INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	50	2	2.33451	3.493245	4.65198	0.0783889	0.0426546	0.175203	0.149802
chr11	96234597	96234697	5112482	0	-	0.39	(0.36,0.39]	chr11	496566	1407	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	6	275	2	3.00031	3.49284	3.98537	0.0153122	0.00307113	0.0849828	0.0309223
chr22	50729807	50729907	7755490	0	+	0.59	(0.58,1]	chr22	812811	1	SS5_PROX	SS5_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2:ENST00000659388.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	116	2	2.85453	3.492325	4.13012	0.0251699	0.00116063	0.107898	0.0157704
chr8	124685675	124685775	4064515	0	-	0.27	[0,0.29]	chr8	387132	123	INTRON	INTRON	MTSS1	ENSG00000170873.19	ENST00000518547.6:ENST00000378017.7:ENST00000325064.9:ENST00000522162.1	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.62751	3.49215	4.35679	0.0743497	0.0332741	0.171851	0.133139
chr1	2294690	2294790	5159	0	+	0.69	(0.58,1]	chr1	1052	463	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.15496	3.491245	4.82753	0.0548868	0.0427798	0.168717	0.13762
chr4	3363595	3363695	2005072	0	+	0.74	(0.58,1]	chr4	204663	202	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	2.15496	3.491245	4.82753	0.0548868	0.0427798	0.168717	0.13762
chr11	70525630	70525730	5059529	0	-	0.64	(0.58,1]	chr11	492663	223	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	2.40217	3.49121	4.58025	0.100879	0.0172566	0.196131	0.0923809
chr19	37779046	37779145	7375354	0	-	0.585859	(0.58,1]	chr19	764630	1	SS5_PROX	SS5_PROX:INTRON	ZNF573	ENSG00000189144.15	ENST00000589632.5:ENST00000392138.5:ENST00000536220.7:ENST00000586155.5:ENST00000585724.5:ENST00000378445.8:ENST00000591516.6:ENST00000588218.1:ENST00000494605.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.40217	3.49121	4.58025	0.100879	0.0172566	0.196131	0.0923809
chr10	75885324	75885424	4525022	0	+	0.43	(0.419,0.45]	chr10	432292	14	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	74	2	1.79421	3.4911250000000003	5.18804	0.0726944	0.051668	0.199502	0.148503
chr11	845878	845976	4786123	0	+	0.653061	(0.58,1]	chr11	458422	9	INTRON	INTRON	TSPAN4	ENSG00000214063.12	ENST00000397411.6:ENST00000397396.5:ENST00000397397.7:ENST00000397408.5:ENST00000530404.5:ENST00000525334.5:ENST00000397406.5:ENST00000409543.6:ENST00000525201.5:ENST00000397404.5	protein_coding	protein_coding	protein_coding	protein_coding	2	88	2	3.44157	3.491085	3.5406	0.0154024	0.00760198	0.0849828	0.0561937
chr16	81564776	81564876	6508941	0	+	0.42	(0.419,0.45]	chr16	645911	689	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	3	147	2	3.31077	3.4910500000000004	3.67133	0.021076	0.00578234	0.0996078	0.0471418
chr2	39101143	39101243	1127165	0	-	0.47	(0.45,0.485]	chr2	123480	28	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	50	2	2.65647	3.49069	4.32491	0.0837071	0.0418883	0.181508	0.149021
chr20	58445827	58445926	7498118	0	+	0.545455	(0.523,0.58]	chr20	781915	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VAPB	ENSG00000124164.16	ENST00000475243.6:ENST00000265619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	1.91169	3.49063	5.06957	0.0659513	0.0448011	0.189025	0.140478
chr3	58010455	58010555	1483058	0	+	0.58	(0.523,0.58]	chr3	159572	12	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	104	2	3.31719	3.4905850000000003	3.66398	0.0167995	0.0124719	0.0884836	0.0765738
chr17	49624369	49624468	6925235	0	-	0.282828	[0,0.29]	chr17	705476	11	INTRON	INTRON	SPOP	ENSG00000121067.19	ENST00000393328.6:ENST00000504102.6:ENST00000347630.6:ENST00000665825.1:ENST00000514121.6:ENST00000659760.1:ENST00000509079.6:ENST00000671445.1:ENST00000513080.6:ENST00000503676.5:ENST00000505581.5:ENST00000506399.5:ENST00000507970.5:ENST00000515508.6:ENST00000504212.5:ENST00000510476.5:ENST00000508805.5:ENST00000451526.6:ENST00000502385.1:ENST00000509765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	35	2	2.43841	3.49058	4.54275	0.0701324	0.0681032	0.195286	0.164448
chr7	77709436	77709536	3400437	0	+	0.5	(0.485,0.523]	chr7	328497	117	INTRON	INTRON	RSBN1L	ENSG00000187257.16	ENST00000334955.13:ENST00000445288.5	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.13331	3.48971	4.84611	0.0626854	0.0608067	0.181933	0.158506
chr7	95417387	95417486	3641291	0	-	0.454545	(0.45,0.485]	chr7	350622	7	INTRON	INTRON	PON2	ENSG00000105854.13	ENST00000222572.8:ENST00000633531.1:ENST00000455123.5:ENST00000433091.6:ENST00000633192.1:ENST00000446142.5:ENST00000469926.5:ENST00000491069.5:ENST00000490778.5:ENST00000632034.1:ENST00000493290.5:ENST00000478801.5:ENST00000460873.5:ENST00000493469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	2.14074	3.489145	4.83755	0.06646	0.0632663	0.183518	0.162385
chr7	138550462	138550562	3502913	0	+	0.43	(0.419,0.45]	chr7	337534	113	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	242	2	3.47648	3.489115	3.50175	0.0145218	0.00206536	0.0823112	0.0235758
chr17	77454449	77454549	6804921	0	+	0.59	(0.58,1]	chr17	686800	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	2.21459	3.488715	4.76284	0.0487458	0.0471737	0.160725	0.143232
chr1	17593460	17593559	54114	0	+	0.59596	(0.58,1]	chr1	5465	46	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.02776	3.48829	4.94882	0.0700362	0.0354433	0.195209	0.127188
chr11	83072149	83072247	4907999	0	+	0.653061	(0.58,1]	chr11	473731	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RAB30-DT	ENSG00000246067.9	ENST00000656330.1:ENST00000658004.1:ENST00000527627.5:ENST00000669459.2:ENST00000689041.1:ENST00000526795.1:ENST00000501011.8:ENST00000663168.1:ENST00000533528.1:ENST00000655468.1:ENST00000533708.1:ENST00000534499.1:ENST00000669058.1	lncRNA	lncRNA	lncRNA	lncRNA	2	45	2	2.02776	3.48829	4.94882	0.0700362	0.0354433	0.195209	0.127188
chr16	8856704	8856801	6382971	0	+	0.546392	(0.523,0.58]	chr16	631367	4	INTRON	INTRON	PMM2	ENSG00000140650.13	ENST00000683274.1:ENST00000565934.2	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	1	36	2	2.46839	3.4871600000000003	4.50593	0.094303	0.0683019	0.193274	0.188571
chr16	81688088	81688187	6510192	0	+	0.555556	(0.523,0.58]	chr16	645979	91	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.46839	3.4871600000000003	4.50593	0.094303	0.0683019	0.193274	0.188571
chr16	87868285	87868384	6657158	0	-	0.535354	(0.523,0.58]	chr16	666011	48	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.46839	3.4871600000000003	4.50593	0.094303	0.0683019	0.193274	0.188571
chr2	70936430	70936529	827608	0	+	0.555556	(0.523,0.58]	chr2	93298	31	INTRON	INTRON	VAX2	ENSG00000116035.4	ENST00000432367.6:ENST00000646783.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	1	36	2	2.46839	3.4871600000000003	4.50593	0.094303	0.0683019	0.193274	0.188571
chr2	74104576	74104676	835055	0	+	0.53	(0.523,0.58]	chr2	94300	25	UTR3	UTR3:EXON_MRNA	TET3	ENSG00000187605.16	ENST00000409262.8	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.46839	3.4871600000000003	4.50593	0.094303	0.0683019	0.193274	0.188571
chr9	4828025	4828123	4109470	0	+	0.571429	(0.523,0.58]	chr9	391326	6	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.46839	3.4871600000000003	4.50593	0.094303	0.0683019	0.193274	0.188571
chr9	114204401	114204501	4226196	0	+	0.58	(0.523,0.58]	chr9	400776	80	INTRON	INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8:ENST00000451716.5:ENST00000494090.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.46839	3.4871600000000003	4.50593	0.094303	0.0683019	0.193274	0.188571
chr6	155255542	155255640	3297576	0	-	0.397959	(0.39,0.419]	chr6	319132	14	EXON_LNCRNA	EXON_LNCRNA	ENSG00000235381	ENSG00000235381.1	ENST00000435295.1	lncRNA	lncRNA	lncRNA	lncRNA	7	302	2	3.46849	3.48624	3.50399	0.0136291	0.00103149	0.0797406	0.0144929
chr2	101134440	101134540	1239928	0	-	0.42	(0.419,0.45]	chr2	133786	246	INTRON	INTRON	TBC1D8	ENSG00000204634.13	ENST00000409318.2:ENST00000376840.8:ENST00000463469.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.21736	3.48613	4.7549	0.0888907	0.058705	0.183874	0.176098
chr2	235522524	235522624	1062821	0	+	0.54	(0.523,0.58]	chr2	115651	273	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	161	2	2.80355	3.48552	4.16749	0.00931283	0.00680947	0.0644067	0.0548177
chr17	29129914	29130011	6876461	0	-	0.56701	(0.523,0.58]	chr17	697994	10	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000590242.5:ENST00000528564.2:ENST00000528322.6:ENST00000585573.6:ENST00000533420.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	2.53438	3.485175	4.43597	0.0957531	0.0313935	0.189038	0.127822
chr20	38427218	38427308	7561098	0	-	0.6	(0.58,1]	chr20	789769	9	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000671309.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	114	2	3.3216	3.4847200000000003	3.64784	0.0230709	0.00130204	0.102982	0.0171306
chr13	97367552	97367652	5632267	0	+	0.51	(0.485,0.523]	chr13	553226	6	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000449284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	59	2	1.89919	3.48459	5.06999	0.0679216	0.0445854	0.193274	0.140478
chr11	2686198	2686298	4972173	0	-	0.58	(0.523,0.58]	chr11	481197	780	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	3	132	2	3.15279	3.48456	3.8163299999999998	0.012872	0.00667201	0.0772995	0.0517092
chr16	84736757	84736856	6514197	0	+	0.50505	(0.485,0.523]	chr16	646283	29	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	47	2	2.5366	3.484545	4.43249	0.0953348	0.0322299	0.189038	0.12988
chr20	5105787	5105887	7519047	0	-	0.49	(0.485,0.523]	chr20	784931	2	SS5_PROX	SS5_PROX:INTRON	TMEM230	ENSG00000089063.15	ENST00000615008.4:ENST00000612323.4:ENST00000202834.11:ENST00000379283.6:ENST00000379279.6:ENST00000379299.6:ENST00000379286.6:ENST00000492419.1:ENST00000379277.6:ENST00000342308.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	47	2	2.5366	3.484545	4.43249	0.0953348	0.0322299	0.189038	0.12988
chr19	735841	735918	7184611	0	+	0.649351	(0.58,1]	chr19	730572	4	SS3_PROX	SS3_PROX:INTRON	PALM	ENSG00000099864.18	ENST00000338448.10:ENST00000264560.11:ENST00000589012.5:ENST00000593172.5:ENST00000633534.1:ENST00000592155.5:ENST00000590161.2:ENST00000587513.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	105	2	2.84993	3.4843400000000004	4.11875	0.0297842	0.00489075	0.126591	0.0457614
chr14	104873255	104873355	5925944	0	+	0.67	(0.58,1]	chr14	579942	43	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	3	118	2	2.35391	3.48395	4.61399	0.0600041	2.64819e-4	0.158506	0.00556151
chr22	46290299	46290399	7743253	0	+	0.59	(0.58,1]	chr22	811891	4	SS5_PROX	SS5_PROX:INTRON	TTC38	ENSG00000075234.17	ENST00000381031.8:ENST00000451998.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	226	2	3.38071	3.48367	3.58663	0.00588897	7.80685e-4	0.0506158	0.01194
chr19	5976979	5977079	7318987	0	-	0.46	(0.45,0.485]	chr19	755884	4	SS3_PROX	SS3_PROX:INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5:ENST00000587956.5:ENST00000591333.5:ENST00000592266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	105	2	3.38668	3.483025	3.57937	0.0206537	0.0113463	0.0984724	0.0719708
chr17	44352952	44353029	6740028	0	+	0.597403	(0.58,1]	chr17	678791	3	UTR3	UTR3:EXON_MRNA	GRN	ENSG00000030582.18	ENST00000053867.8:ENST00000589265.5:ENST00000586443.1:ENST00000586242.1	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.342	3.483015	4.62403	0.0578275	0.023878	0.154343	0.111721
chr20	44406990	44407085	7482987	0	+	0.473684	(0.45,0.485]	chr20	779651	9	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	74	2	2.12706	3.482305	4.83755	0.06646	0.0349313	0.162385	0.136795
chr1	30935242	30935342	434626	0	-	0.51	(0.485,0.523]	chr1	51446	15	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000530669.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.45723	3.481785	4.50634	0.0939553	0.0700289	0.195209	0.188571
chr11	16948981	16949081	5011058	0	-	0.49	(0.485,0.523]	chr11	484333	356	INTRON	INTRON	PLEKHA7	ENSG00000166689.17	ENST00000531066.6:ENST00000355661.7:ENST00000532079.1:ENST00000529213.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.45723	3.481785	4.50634	0.0939553	0.0700289	0.195209	0.188571
chr12	421021	421121	5148395	0	+	0.52	(0.485,0.523]	chr12	500517	20	INTRON	INTRON	CCDC77	ENSG00000120647.10	ENST00000540180.5:ENST00000422000.5:ENST00000543504.5:ENST00000540344.5:ENST00000412006.6:ENST00000239830.9	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	36	2	2.45723	3.481785	4.50634	0.0939553	0.0700289	0.195209	0.188571
chr12	108646404	108646504	5492577	0	-	0.51	(0.485,0.523]	chr12	540315	14	UTR3	UTR3:EXON_MRNA	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.45723	3.481785	4.50634	0.0939553	0.0700289	0.195209	0.188571
chr16	16330757	16330857	6408876	0	+	0.5	(0.485,0.523]	chr16	633511	3	SS3_PROX	SS3_PROX:INTRON	ENSG00000183889	ENSG00000183889.12	ENST00000537112.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	36	2	2.45723	3.481785	4.50634	0.0939553	0.0700289	0.195209	0.188571
chr6	41721865	41721964	3132612	0	-	0.515152	(0.485,0.523]	chr6	305481	161	INTRON	INTRON	TFEB	ENSG00000112561.19	ENST00000358871.6:ENST00000373033.6:ENST00000230323.8:ENST00000677531.1:ENST00000403298.9:ENST00000420312.6:ENST00000424495.2:ENST00000678831.1:ENST00000419396.6:ENST00000416140.6:ENST00000678871.1:ENST00000394283.5:ENST00000679237.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	36	2	2.45723	3.481785	4.50634	0.0939553	0.0700289	0.195209	0.188571
chr7	29203682	29203782	3334380	0	+	0.52	(0.485,0.523]	chr7	322843	53	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5:ENST00000222792.11:ENST00000409350.5:ENST00000409964.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.45723	3.481785	4.50634	0.0939553	0.0700289	0.195209	0.188571
chr7	143384445	143384545	3510749	0	+	0.51	(0.485,0.523]	chr7	338485	2	SS5_PROX	SS5_PROX:INTRON	ZYX	ENSG00000159840.16	ENST00000322764.10:ENST00000354434.8:ENST00000392910.6:ENST00000436448.1:ENST00000446634.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	36	2	2.45723	3.481785	4.50634	0.0939553	0.0700289	0.195209	0.188571
chr9	37989627	37989727	4302983	0	-	0.49	(0.485,0.523]	chr9	411610	144	INTRON	INTRON	SHB	ENSG00000107338.10	ENST00000377707.4	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.45723	3.481785	4.50634	0.0939553	0.0700289	0.195209	0.188571
chr12	15779878	15779978	5380399	0	-	0.33	(0.29,0.33]	chr12	527513	518	INTRON	INTRON	EPS8	ENSG00000151491.14	ENST00000281172.10:ENST00000543523.5:ENST00000543468.5:ENST00000644374.1:ENST00000646918.1:ENST00000645775.1:ENST00000642939.1:ENST00000646828.1:ENST00000647224.1:ENST00000642278.1:ENST00000646123.1:ENST00000647087.1:ENST00000536956.5:ENST00000535752.5:ENST00000536793.5:ENST00000543363.5:ENST00000544064.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	2.45052	3.481765	4.51301	0.0885563	0.0341666	0.183874	0.134436
chr12	111596348	111596448	5500368	0	-	0.32	(0.29,0.33]	chr12	541405	316	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	2.45052	3.481765	4.51301	0.0885563	0.0341666	0.183874	0.134436
chr11	70818963	70819063	5062473	0	-	0.65	(0.58,1]	chr11	492713	114	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	88	2	3.39676	3.481265	3.56577	0.0146864	0.0085026	0.0826843	0.0608246
chr16	81547281	81547381	6508766	0	+	0.64	(0.58,1]	chr16	645911	514	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	88	2	3.39676	3.481265	3.56577	0.0146864	0.0085026	0.0826843	0.0608246
chr7	45892359	45892459	3370059	0	+	0.39	(0.36,0.39]	chr7	325171	3	SS5_PROX	SS5_PROX:INTRON	IGFBP1	ENSG00000146678.10	ENST00000457280.5:ENST00000275525.8:ENST00000468955.1	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	2.39283	3.481045	4.56926	0.0733114	0.031369	0.17026	0.127822
chr2	26091563	26091663	731395	0	+	0.36	(0.33,0.36]	chr2	85215	489	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	62	2	2.00997	3.4808	4.95163	0.0583482	0.0578928	0.175217	0.155373
chr5	134926757	134926856	2539854	0	+	0.414141	(0.39,0.419]	chr5	252048	159	INTRON	INTRON	PCBD2	ENSG00000132570.15	ENST00000512783.5:ENST00000254908.11:ENST00000504352.1:ENST00000510013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	83	2	1.81317	3.4806999999999997	5.14823	0.059571	0.0501234	0.176955	0.147892
chr15	58665796	58665895	6278619	0	-	0.393939	(0.39,0.419]	chr15	618722	2	INTRON	INTRON	ADAM10	ENSG00000137845.15	ENST00000260408.8:ENST00000402627.5:ENST00000561288.1:ENST00000396136.6:ENST00000559053.1:ENST00000558733.5:ENST00000439637.5:ENST00000497846.5:ENST00000558004.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	52	2	2.6589	3.480235	4.30157	0.0879325	0.0496288	0.183764	0.160725
chr8	22374430	22374530	3770092	0	+	0.58	(0.523,0.58]	chr8	362721	63	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	14	315	2	2.2836	3.47965	4.6757	0.0100384	0.0025819	0.0670367	0.0321738
chr3	13026094	13026194	1689397	0	-	0.6	(0.58,1]	chr3	176542	36	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	2	84	2	3.13234	3.4794400000000003	3.82654	0.0322188	0.00275362	0.121593	0.0285628
chr8	133294777	133294877	4084273	0	-	0.43	(0.419,0.45]	chr8	388357	2	SS5_PROX	SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1:ENST00000674839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	98	2	2.87415	3.478695	4.08324	0.0727147	0.0380412	0.199502	0.131324
chr22	50706652	50706751	7755251	0	+	0.656566	(0.58,1]	chr22	812777	1	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	42	2	2.56085	3.4785250000000003	4.3962	0.0803939	0.0250928	0.177452	0.114418
chr7	6699459	6699554	3542707	0	-	0.589474	(0.58,1]	chr7	342314	13	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000404360.5:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	1	42	2	2.56085	3.4785250000000003	4.3962	0.0803939	0.0250928	0.177452	0.114418
chr1	17589277	17589377	54072	0	+	0.58	(0.523,0.58]	chr1	5465	4	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5	protein_coding	protein_coding	protein_coding	protein_coding	3	133	2	3.0699	3.4783850000000003	3.88687	0.0113547	0.00819703	0.0723462	0.0591729
chr1	17589576	17589676	54075	0	+	0.49	(0.485,0.523]	chr1	5465	7	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5	protein_coding	protein_coding	protein_coding	protein_coding	3	136	2	3.0328	3.47788	3.92296	0.0239561	0.00288574	0.106076	0.0297057
chr2	134451634	134451734	898764	0	+	0.35	(0.33,0.36]	chr2	101298	29	UTR3	UTR3:EXON_MRNA	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.12031	3.477845	4.83538	0.0679743	0.0467883	0.164413	0.156817
chr16	50622902	50623001	6452158	0	+	0.646465	(0.58,1]	chr16	639918	8	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	7	232	2	3.27576	3.47766	3.67956	0.004891	9.68101e-4	0.0457614	0.0138787
chr1	10154958	10155057	23593	0	+	0.292929	(0.29,0.33]	chr1	2617	30	INTRON	INTRON	UBE4B	ENSG00000130939.20	ENST00000672724.1:ENST00000253251.12:ENST00000343090.11	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.44033	3.4766700000000004	4.51301	0.0885563	0.072701	0.199502	0.183874
chr2	105770466	105770566	868823	0	+	0.32	(0.29,0.33]	chr2	98078	242	INTRON	INTRON	NCK2	ENSG00000071051.14	ENST00000233154.9:ENST00000451463.6:ENST00000393348.6	protein_coding	protein_coding	protein_coding	protein_coding	1	36	2	2.44033	3.4766700000000004	4.51301	0.0885563	0.072701	0.199502	0.183874
chr7	29204182	29204282	3334385	0	+	0.32	(0.29,0.33]	chr7	322843	58	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5:ENST00000222792.11:ENST00000409350.5:ENST00000409964.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	36	2	2.44033	3.4766700000000004	4.51301	0.0885563	0.072701	0.199502	0.183874
chr6	144654047	144654147	3023608	0	+	0.4	(0.39,0.419]	chr6	295440	701	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000367526.8	protein_coding	protein_coding	protein_coding	protein_coding	2	106	2	3.32988	3.4762399999999998	3.6226	0.0338241	0.0073612	0.124319	0.055174
chr2	163695303	163695403	1295915	0	-	0.46	(0.45,0.485]	chr2	139073	831	INTRON	INTRON	FIGN	ENSG00000182263.14	ENST00000409634.5:ENST00000333129.4:ENST00000482917.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	2.24119	3.476145	4.7111	0.0781398	0.0525018	0.175203	0.167062
chr16	85384938	85385038	6516920	0	+	0.63	(0.58,1]	chr16	646391	256	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.6577	3.47612	4.29454	0.0695799	0.0305531	0.167028	0.126768
chr2	165937867	165937966	1301062	0	-	0.383838	(0.36,0.39]	chr2	139566	3	INTRON	INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000679840.1:ENST00000680448.1:ENST00000681606.1:ENST00000679671.1:ENST00000464374.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	141	2	3.42799	3.4760999999999997	3.52421	0.0287904	0.00323378	0.115991	0.0319521
chr19	45277722	45277822	7272382	0	+	0.51	(0.485,0.523]	chr19	746882	4	SS3_PROX	SS3_PROX:INTRON	MARK4	ENSG00000007047.16	ENST00000262891.9:ENST00000300843.8:ENST00000592762.5:ENST00000588621.5:ENST00000592207.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	103	2	3.30597	3.475975	3.64598	0.0172726	0.012958	0.0897247	0.0778899
chr15	52248499	52248599	6262718	0	-	0.36	(0.33,0.36]	chr15	617272	4	SS5_PROX	SS5_PROX:INTRON	MYO5C	ENSG00000128833.13	ENST00000261839.12:ENST00000560809.5:ENST00000558902.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	2.24295	3.4759450000000003	4.70894	0.0798152	0.053728	0.176933	0.167824
chr16	89912118	89912212	6526296	0	+	0.553191	(0.523,0.58]	chr16	647710	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TCF25:ENSG00000267048:MC1R	ENSG00000141002.20:ENSG00000267048.1:ENSG00000258839.4	ENST00000640279.1:ENST00000570217.1:ENST00000539976.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay	6	94	2	2.10528	3.475485	4.84569	0.0610722	0.0253636	0.158506	0.115427
chr21	45433943	45434043	7630602	0	+	0.59	(0.58,1]	chr21	797656	281	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	3	115	2	2.87663	3.475465	4.0743	0.0241649	0.00136577	0.106588	0.0176851
chr4	185797770	185797870	2372183	0	-	0.56	(0.523,0.58]	chr4	237058	220	INTRON	INTRON	SORBS2	ENSG00000154556.19	ENST00000284776.11:ENST00000695409.1:ENST00000319471.13:ENST00000449407.6:ENST00000355634.9:ENST00000451974.6:ENST00000393528.7:ENST00000487184.2:ENST00000695410.1:ENST00000695411.1:ENST00000470685.5:ENST00000439914.5:ENST00000439049.5:ENST00000451958.5:ENST00000444781.5:ENST00000419063.5:ENST00000393523.6:ENST00000420158.5:ENST00000421639.5:ENST00000493709.5:ENST00000431902.5:ENST00000415274.5:ENST00000432655.5:ENST00000428330.5:ENST00000464819.5:ENST00000478249.5:ENST00000429056.5:ENST00000463104.5:ENST00000456060.5:ENST00000476878.1:ENST00000462661.1:ENST00000469627.1:ENST00000488562.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	97	2	3.32604	3.475155	3.62427	0.0296013	0.0060311	0.116079	0.0484641
chr22	24099556	24099653	7695356	0	+	0.381443	(0.36,0.39]	chr22	805517	9	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	63	2	2.00816	3.47505	4.94194	0.064883	0.0594067	0.176539	0.162218
chr4	9883113	9883212	2193627	0	-	0.353535	(0.33,0.36]	chr4	222234	22	INTRON	INTRON	SLC2A9	ENSG00000109667.12	ENST00000503803.5:ENST00000512342.5:ENST00000503280.5:ENST00000506583.5:ENST00000264784.8:ENST00000309065.7:ENST00000505104.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	269	2	3.03697	3.474345	3.91172	0.0149673	0.00107908	0.0836187	0.0149203
chr22	50712237	50712336	7755308	0	+	0.59596	(0.58,1]	chr22	812783	2	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	41	2	2.45703	3.474095	4.49116	0.0933945	0.0207449	0.188571	0.102713
chr21	45499547	45499646	7631300	0	+	0.69697	(0.58,1]	chr21	797812	15	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	2	86	2	3.46232	3.473675	3.48503	0.0178328	0.006811	0.0915706	0.0524379
chr7	152397949	152398049	3737110	0	-	0.37	(0.36,0.39]	chr7	359244	389	INTRON	INTRON	KMT2C	ENSG00000055609.21	ENST00000262189.11:ENST00000682283.1:ENST00000679882.1:ENST00000679645.1:ENST00000684550.1:ENST00000683490.1:ENST00000683616.1:ENST00000682280.1:ENST00000680039.1:ENST00000681082.1:ENST00000682301.1:ENST00000452749.2:ENST00000680867.1:ENST00000683800.1:ENST00000684278.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	105	2	2.93677	3.473245	4.00972	0.0598652	0.0028904	0.158491	0.0297318
chr17	58369522	58369621	6932564	0	-	0.535354	(0.523,0.58]	chr17	706609	56	INTRON	INTRON	RNF43	ENSG00000108375.13	ENST00000577716.5:ENST00000407977.7:ENST00000584437.5:ENST00000583753.5:ENST00000577625.5:ENST00000581868.1	protein_coding	protein_coding	protein_coding	protein_coding	3	129	2	3.37594	3.4728	3.56966	0.0272868	0.00224097	0.112327	0.024843
chr19	34391995	34392095	7243270	0	+	0.48	(0.45,0.485]	chr19	741718	100	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	24	1096	2	3.29688	3.471445	3.64601	0.00263262	6.91733e-4	0.0325876	0.0109639
chr1	31415372	31415472	80078	0	+	0.52	(0.485,0.523]	chr1	9155	1	SS3_PROX	SS3_PROX:INTRON	SERINC2	ENSG00000168528.12	ENST00000373710.5:ENST00000536859.5:ENST00000487207.5:ENST00000373709.8:ENST00000536384.2:ENST00000491976.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	153	2	2.81556	3.4713649999999996	4.12717	0.0545434	0.0202149	0.167824	0.0975542
chr14	89256209	89256308	6026660	0	-	0.323232	(0.29,0.33]	chr14	591432	250	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	176	2	2.98196	3.4701500000000003	3.95834	0.00934669	0.00436939	0.0651019	0.0392166
chr2	11579322	11579420	720666	0	+	0.438776	(0.419,0.45]	chr2	84132	5	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000263834.9:ENST00000389825.7:ENST00000381483.6:ENST00000234142.9	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.1235	3.4701049999999998	4.81671	0.08258	0.0693342	0.194077	0.179396
chr2	62785521	62785621	814755	0	+	0.42	(0.419,0.45]	chr2	92095	135	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000449820.5:ENST00000426940.5:ENST00000413434.5:ENST00000405482.5:ENST00000494958.1:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	52	2	2.1235	3.4701049999999998	4.81671	0.08258	0.0693342	0.194077	0.179396
chr7	47347851	47347951	3587269	0	-	0.42	(0.419,0.45]	chr7	346030	11	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.1235	3.4701049999999998	4.81671	0.08258	0.0693342	0.194077	0.179396
chr12	6768957	6769052	5165706	0	+	0.557895	(0.523,0.58]	chr12	502315	19	INTRON	INTRON	PTMS	ENSG00000159335.18	ENST00000540667.5:ENST00000309083.8:ENST00000389462.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	49	2	2.70025	3.46999	4.23973	0.0763549	0.0444247	0.174544	0.153511
chr19	34386896	34386996	7243219	0	+	0.5	(0.485,0.523]	chr19	741718	49	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	122	2	2.79862	3.4698599999999997	4.1411	0.0375966	0.00711965	0.139924	0.0560147
chr16	89293095	89293194	6659736	0	-	0.606061	(0.58,1]	chr16	666648	9	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	235	2	3.41854	3.469805	3.52107	0.00841183	4.43535e-4	0.0616845	0.00804601
chr21	43920414	43920514	7624984	0	+	0.54	(0.523,0.58]	chr21	796899	36	INTRON	INTRON	AGPAT3	ENSG00000160216.21	ENST00000291572.13:ENST00000448287.5:ENST00000398061.5:ENST00000327505.6:ENST00000445582.5	protein_coding	protein_coding	protein_coding	protein_coding	2	96	2	3.2478	3.469805	3.69181	0.0335771	0.00510333	0.124319	0.0433857
chr21	6121715	6121813	7589004	0	+	0.632653	(0.58,1]	chr21	793510	3	UTR3	UTR3:EXON_MRNA	ENSG00000275993	ENSG00000275993.3	ENST00000613488.3	protein_coding	protein_coding	protein_coding	protein_coding	2	90	2	3.25332	3.4693899999999998	3.68546	0.0120565	0.0116759	0.0754623	0.0735761
chr12	102854536	102854635	5485492	0	-	0.40404	(0.39,0.419]	chr12	539523	12	INTRON	INTRON	PAH	ENSG00000171759.10	ENST00000553106.6:ENST00000307000.7	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.11359	3.46899	4.82439	0.0762206	0.048682	0.174484	0.160725
chr14	19096204	19096304	5754302	0	+	0.53	(0.523,0.58]	chr14	564239	24	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000619938.1:ENST00000644980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	17	663	2	3.34662	3.4689050000000003	3.59119	0.00360082	5.40556e-4	0.0385293	0.00922604
chr8	133295747	133295847	4084284	0	-	0.47	(0.45,0.485]	chr8	388361	3	SS5_PROX	SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	219	2	2.75654	3.46884	4.18114	0.0419966	0.00319525	0.149115	0.0361439
chr11	102183222	102183322	4930477	0	+	0.42	(0.419,0.45]	chr11	475101	203	INTRON	INTRON	YAP1	ENSG00000137693.14	ENST00000282441.10:ENST00000537274.5:ENST00000345877.6:ENST00000615667.4:ENST00000526343.5:ENST00000531439.5:ENST00000629586.2:ENST00000524575.5:ENST00000526594.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	76	2	2.00387	3.468385	4.9329	0.0716557	0.0489452	0.168159	0.160725
chr17	6706341	6706441	6846144	0	-	0.6	(0.58,1]	chr17	693332	3	SS5_PROX	SS5_PROX:INTRON	SLC13A5	ENSG00000141485.17	ENST00000433363.7:ENST00000293800.10:ENST00000381074.8:ENST00000573648.5:ENST00000572094.1:ENST00000572352.5:ENST00000576323.1:ENST00000575230.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	63	2	2.44544	3.4683	4.49116	0.0516128	0.0207449	0.148503	0.102713
chr9	71685099	71685196	4313926	0	-	0.329897	(0.29,0.33]	chr9	412404	19	UTR3	UTR3:EXON_MRNA	CEMIP2	ENSG00000135048.14	ENST00000377044.9:ENST00000377057.5:ENST00000538669.1:ENST00000377066.9:ENST00000542935.5:ENST00000396272.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	161	2	3.36346	3.4677	3.57194	0.026605	0.0012656500000000001	0.111446	0.0167846
chrX	78118670	78118769	7912439	0	+	0.474747	(0.45,0.485]	chrX	828893	1	INTRON	INTRON	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000491291.1:ENST00000373316.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	110	2	2.6102	3.467555	4.32491	0.0418883	0.0371087	0.149021	0.130018
chr7	149612303	149612403	3733297	0	-	0.44	(0.419,0.45]	chr7	358677	483	INTRON	INTRON	ZNF767P	ENSG00000133624.14	ENST00000463567.5:ENST00000472212.5:ENST00000684939.1:ENST00000690388.1:ENST00000486492.5:ENST00000481762.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	145	2	3.35317	3.46746	3.58175	0.0344362	0.00296557	0.126025	0.0301816
chr16	50559318	50559418	6451520	0	+	0.4	(0.39,0.419]	chr16	639902	7	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	82	2	1.78658	3.467405	5.14823	0.0626965	0.0501234	0.181962	0.147892
chr17	55303750	55303850	6757501	0	+	0.53	(0.523,0.58]	chr17	681718	144	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	246	2	3.09054	3.467175	3.84381	0.00550964	0.00310263	0.0490242	0.0311614
chr17	57465806	57465906	6761870	0	+	0.46	(0.45,0.485]	chr17	682137	207	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.28891	3.4661850000000003	4.64346	0.0850039	0.0479351	0.181766	0.159092
chr8	38762203	38762303	3802177	0	+	0.47	(0.45,0.485]	chr8	365828	44	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	50	2	2.28891	3.4661850000000003	4.64346	0.0850039	0.0479351	0.181766	0.159092
chr17	77474643	77474743	6805125	0	+	0.61	(0.58,1]	chr17	686810	77	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	33	2	2.38295	3.46611	4.54927	0.0730701	0.0643046	0.199669	0.161669
chr2	3304084	3304183	1081148	0	-	0.606061	(0.58,1]	chr2	117633	214	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	33	2	2.38295	3.46611	4.54927	0.0730701	0.0643046	0.199669	0.161669
chr20	25493798	25493896	7539891	0	-	0.693878	(0.58,1]	chr20	787018	19	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5:ENST00000461642.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.38295	3.46611	4.54927	0.0730701	0.0643046	0.199669	0.161669
chr20	41158207	41158307	7479634	0	+	0.65	(0.58,1]	chr20	778970	200	INTRON	INTRON	PLCG1	ENSG00000124181.15	ENST00000244007.7:ENST00000373271.5:ENST00000685551.1:ENST00000490253.1:ENST00000483646.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	33	2	2.38295	3.46611	4.54927	0.0730701	0.0643046	0.199669	0.161669
chr22	45292190	45292288	7738871	0	+	0.622449	(0.58,1]	chr22	811371	27	INTRON	INTRON	UPK3A	ENSG00000100373.10	ENST00000216211.9:ENST00000396082.2	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.38295	3.46611	4.54927	0.0730701	0.0643046	0.199669	0.161669
chr3	185728146	185728246	1970391	0	-	0.6	(0.58,1]	chr3	200394	294	INTRON	INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000461957.5:ENST00000493302.5:ENST00000466476.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	33	2	2.38295	3.46611	4.54927	0.0730701	0.0643046	0.199669	0.161669
chr8	141415112	141415209	3925988	0	+	0.690722	(0.58,1]	chr8	374792	12	INTRON	INTRON	PTP4A3	ENSG00000184489.13	ENST00000520105.5:ENST00000521578.6:ENST00000523147.5:ENST00000329397.6	protein_coding	protein_coding	protein_coding	protein_coding	1	33	2	2.38295	3.46611	4.54927	0.0730701	0.0643046	0.199669	0.161669
chr8	8362379	8362479	3934230	0	-	0.52	(0.485,0.523]	chr8	376133	224	INTRON	INTRON	PRAG1	ENSG00000275342.5	ENST00000615670.5:ENST00000622241.1	protein_coding	protein_coding	protein_coding	protein_coding	2	98	2	3.4264	3.4659	3.5054	0.025039	0.00816275	0.10758	0.0589533
chr16	50624290	50624389	6452172	0	+	0.535354	(0.523,0.58]	chr16	639918	22	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	8	291	2	3.17663	3.46584	3.75505	0.0065225	0.00154111	0.053429	0.0192091
chr1	15627492	15627589	47452	0	+	0.329897	(0.29,0.33]	chr1	4676	3	INTRON	INTRON	DDI2	ENSG00000197312.12	ENST00000480945.6:ENST00000486680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	95	2	3.20247	3.4652700000000003	3.72807	0.0346416	0.00487126	0.126432	0.0420427
chr8	120791777	120791877	4059821	0	-	0.35	(0.33,0.36]	chr8	386607	975	INTRON	INTRON	SNTB1	ENSG00000172164.15	ENST00000395601.7:ENST00000517992.2:ENST00000648490.1:ENST00000519177.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	51	2	2.28913	3.46522	4.64131	0.0867669	0.0492629	0.182221	0.160725
chr17	55324501	55324599	6757715	0	+	0.55102	(0.523,0.58]	chr17	681735	38	UTR3	UTR3:EXON_MRNA	HLF	ENSG00000108924.14	ENST00000226067.10	protein_coding	protein_coding	protein_coding	protein_coding	3	137	2	3.11212	3.46511	3.8181	0.0209632	0.0037097	0.0995329	0.0349741
chr21	37366772	37366867	7618966	0	+	0.473684	(0.45,0.485]	chr21	796005	1	UTR5	UTR5:EXON_MRNA:INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2	protein_coding	protein_coding	protein_coding	protein_coding	5	219	2	2.81798	3.464875	4.11177	0.0262964	5.53365e-4	0.110542	0.00941672
chr6	16760399	16760499	3104458	0	-	0.79	(0.58,1]	chr6	300921	4	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000473388.6:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1:ENST00000467008.5:ENST00000498374.1:ENST00000492857.1:ENST00000479680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	56	2	2.0383	3.4641849999999996	4.89007	0.0978534	0.00872525	0.191981	0.0612699
chr14	39085761	39085833	5967672	0	-	0.555556	(0.523,0.58]	chr14	584641	1	CDS	CDS:EXON_MRNA	SEC23A	ENSG00000100934.15	ENST00000307712.11:ENST00000537403.5:ENST00000545328.6	protein_coding	protein_coding	protein_coding	protein_coding	4	165	2	2.59975	3.4639800000000003	4.32821	0.0152448	0.00503935	0.0863685	0.0464868
chr11	65427466	65427566	4871616	0	+	0.51	(0.485,0.523]	chr11	468177	48	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	48	2179	2	3.30472	3.46389	3.62306	0.00194115	4.33793e-4	0.0275844	0.007906
chr11	71200119	71200219	5066304	0	-	0.48	(0.45,0.485]	chr11	492802	249	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000482659.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	69	2	2.25612	3.463755	4.67139	0.0844869	0.0223378	0.181766	0.108193
chr2	175085456	175085555	1321581	0	-	0.373737	(0.36,0.39]	chr2	141130	43	INTRON	INTRON	ATF2	ENSG00000115966.18	ENST00000345739.9:ENST00000426833.7:ENST00000264110.7:ENST00000409437.5:ENST00000409635.5:ENST00000435004.6:ENST00000428760.5:ENST00000392544.5:ENST00000417080.5:ENST00000456655.5:ENST00000421438.5:ENST00000429579.5:ENST00000415955.5:ENST00000409499.5:ENST00000478905.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	148	2	2.89871	3.4636699999999996	4.02863	0.0144142	0.0107356	0.0833845	0.0702888
chr3	23845385	23845485	1431186	0	+	0.33	(0.29,0.33]	chr3	152792	335	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	130	2	2.54963	3.46356	4.37749	0.0510145	8.77694e-4	0.148503	0.0129747
chr10	102646918	102647018	4576493	0	+	0.47	(0.45,0.485]	chr10	437280	7	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	133	2	3.2476	3.46337	3.67914	0.0174714	0.0056886	0.0903552	0.046716
chr2	240522811	240522908	1394664	0	-	0.412371	(0.39,0.419]	chr2	149021	10	UTR3	UTR3:EXON_MRNA:INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000405523.7:ENST00000405002.5:ENST00000484526.5:ENST00000480230.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	63	2	2.04277	3.463215	4.88366	0.0707789	0.0557387	0.170926	0.168159
chr16	85395133	85395233	6517022	0	+	0.54	(0.523,0.58]	chr16	646391	358	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.48975	3.46286	4.43597	0.101574	0.0313935	0.196431	0.127822
chr8	25391134	25391221	3776203	0	+	0.574713	(0.523,0.58]	chr8	363717	5	INTRON	INTRON	DOCK5	ENSG00000147459.18	ENST00000276440.12:ENST00000467709.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	46	2	2.48975	3.46286	4.43597	0.101574	0.0313935	0.196431	0.127822
chr17	77483231	77483331	6805214	0	+	0.61	(0.58,1]	chr17	686820	10	EXON_MRNA	EXON_MRNA:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	111	2	3.33506	3.46279	3.59052	0.014012	0.00321851	0.0807513	0.0319521
chr22	20123949	20124043	7686882	0	+	0.670213	(0.58,1]	chr22	804213	9	INTRON	INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000331821.7:ENST00000411892.5:ENST00000423859.5:ENST00000418705.2:ENST00000448394.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	113	2	2.66444	3.462665	4.26089	0.0354508	7.87512e-4	0.127188	0.0120243
chr15	101359324	101359424	6363132	0	-	0.48	(0.45,0.485]	chr15	627205	29	INTRON	INTRON	PCSK6	ENSG00000140479.18	ENST00000677364.1:ENST00000676598.1:ENST00000558951.5:ENST00000398185.6:ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000679007.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000559605.1:ENST00000560902.5:ENST00000611967.4:ENST00000615296.4:ENST00000676494.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	2.08776	3.462655	4.83755	0.0696113	0.06646	0.194713	0.162385
chrX	71423264	71423352	7904552	0	+	0.465909	(0.45,0.485]	chrX	828234	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TAF1	ENSG00000147133.17	ENST00000683202.1:ENST00000373790.9:ENST00000423759.6:ENST00000683782.1:ENST00000683668.1:ENST00000276072.9:ENST00000373775.8:ENST00000485087.6:ENST00000437147.8:ENST00000683358.1:ENST00000682124.1:ENST00000461764.6:ENST00000492404.6:ENST00000462588.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	49	2	2.08776	3.462655	4.83755	0.0696113	0.06646	0.194713	0.162385
chr11	2666905	2667005	4971980	0	-	0.63	(0.58,1]	chr11	481197	587	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	4	61	2	1.76073	3.46263	5.16453	0.0647557	0.0249802	0.185835	0.10758
chr14	60293664	60293763	5833255	0	+	0.414141	(0.39,0.419]	chr14	570702	13	UTR3	UTR3:EXON_MRNA	PPM1A	ENSG00000100614.18	ENST00000395076.9	protein_coding	protein_coding	protein_coding	protein_coding	2	108	2	3.41977	3.462575	3.50538	0.0257462	0.0116434	0.109555	0.0736274
chr3	13419059	13419159	1693051	0	-	0.52	(0.485,0.523]	chr3	176787	188	INTRON	INTRON	NUP210	ENSG00000132182.13	ENST00000254508.7:ENST00000420141.3:ENST00000695492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	2.0783	3.462205	4.84611	0.0693	0.0608067	0.194071	0.158506
chr16	50622604	50622703	6452155	0	+	0.565657	(0.523,0.58]	chr16	639918	5	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	2	95	2	3.1364	3.461975	3.78755	0.0400336	0.00401039	0.134064	0.0371192
chr2	111474666	111474765	1253389	0	-	0.494949	(0.485,0.523]	chr2	134923	22	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1:ENST00000673878.1:ENST00000439494.1	lncRNA	lncRNA	lncRNA	lncRNA	3	131	2	3.1954	3.461705	3.72801	0.0364043	0.00148235	0.128173	0.0186567
chr15	98805380	98805480	6194900	0	+	0.46	(0.45,0.485]	chr15	609667	205	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1:ENST00000557938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	132	2	3.38568	3.4615650000000002	3.53745	0.0221397	0.00400963	0.101784	0.0371192
chr22	28602054	28602154	7781051	0	-	0.46	(0.45,0.485]	chr22	815741	1591	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.42327	3.460565	4.49786	0.101311	0.0367983	0.196131	0.139793
chr5	139655759	139655859	2549718	0	+	0.59	(0.58,1]	chr5	253168	42	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.25618	3.4601699999999997	4.66416	0.0701734	0.0144381	0.168023	0.0833845
chr9	134369674	134369774	4261120	0	+	0.64	(0.58,1]	chr9	406311	427	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	85	2	3.43525	3.46014	3.48503	0.0187495	0.006811	0.0936297	0.0524379
chr2	200360553	200360653	986498	0	+	0.56	(0.523,0.58]	chr2	108296	89	INTRON	INTRON	SPATS2L	ENSG00000196141.14	ENST00000439084.5:ENST00000409718.5:ENST00000358677.9:ENST00000409988.7:ENST00000409385.5:ENST00000439395.5:ENST00000444012.5:ENST00000451764.6:ENST00000360760.9:ENST00000423749.5:ENST00000457757.5:ENST00000471601.5:ENST00000428692.5:ENST00000453663.5:ENST00000409140.8:ENST00000459656.5:ENST00000471533.5:ENST00000409397.6:ENST00000619961.4:ENST00000409151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	175	2	2.94965	3.46005	3.97045	0.0097704	0.00453828	0.0666676	0.0401214
chr16	69568394	69568494	6484059	0	+	0.34	(0.33,0.36]	chr16	643983	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	NFAT5	ENSG00000102908.22	ENST00000426654.6:ENST00000349945.7:ENST00000354436.6:ENST00000627621.3:ENST00000650987.1:ENST00000567990.5:ENST00000567239.5:ENST00000393742.7:ENST00000565301.2:ENST00000566899.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	62	2	2.08446	3.45992	4.83538	0.0679743	0.0501849	0.164413	0.161987
chr2	78181317	78181417	1209263	0	-	0.35	(0.33,0.36]	chr2	130071	2411	INTRON	INTRON	ENSG00000227088	ENSG00000227088.2	ENST00000667782.1	lncRNA	lncRNA	lncRNA	lncRNA	3	62	2	2.08446	3.45992	4.83538	0.0679743	0.0501849	0.164413	0.161987
chr6	63540116	63540216	2933810	0	+	0.4	(0.39,0.419]	chr6	288732	72	INTRON	INTRON	PTP4A1	ENSG00000112245.13	ENST00000648894.1:ENST00000639568.2:ENST00000470661.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	83	2	2.35992	3.459675	4.55943	0.104562	0.0227734	0.19835	0.108552
chr2	235591122	235591222	1063509	0	+	0.51	(0.485,0.523]	chr2	115656	662	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	65	2	2.15873	3.45906	4.75939	0.0938146	0.0172254	0.188571	0.0923809
chr8	728051	728150	3933011	0	-	0.555556	(0.523,0.58]	chr8	376060	117	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.19842	3.4588200000000002	4.71922	0.0721601	0.0551586	0.169218	0.168159
chr9	131430759	131430855	4257985	0	+	0.5	(0.485,0.523]	chr9	405615	1	INTRON	INTRON	PRRC2B	ENSG00000288701.1	ENST00000684596.1:ENST00000683519.1:ENST00000682501.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.13331	3.4587849999999998	4.78426	0.0660335	0.0626854	0.181933	0.162385
chr11	104949445	104949542	5115243	0	-	0.391753	(0.39,0.419]	chr11	496720	9	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	CASP4	ENSG00000196954.14	ENST00000444739.7:ENST00000393150.7:ENST00000529565.1:ENST00000533730.5:ENST00000529183.5:ENST00000524843.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	51	2	2.15477	3.45867	4.76257	0.0822354	0.0645366	0.185295	0.179396
chr16	50598997	50599097	6451917	0	+	0.64	(0.58,1]	chr16	639902	404	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	111	2	3.37954	3.45748	3.53542	0.0207688	0.00181405	0.098873	0.0215865
chr17	66315117	66315217	6783555	0	+	0.39	(0.36,0.39]	chr17	684226	86	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	66	2	2.27894	3.4553200000000004	4.6317	0.0950937	0.0349959	0.189021	0.137031
chrX	133756474	133756574	8113731	0	-	0.39	(0.36,0.39]	chrX	845523	19	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	66	2	2.27894	3.4553200000000004	4.6317	0.0950937	0.0349959	0.189021	0.137031
chr9	129499843	129499941	4250775	0	+	0.489796	(0.485,0.523]	chr9	404726	10	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	130	2	2.53609	3.45519	4.37429	0.0538271	8.506e-4	0.151027	0.0126678
chr3	51668271	51668370	1472223	0	+	0.59596	(0.58,1]	chr3	157989	50	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.21459	3.4548449999999997	4.6951	0.0521567	0.0487458	0.160725	0.148503
chr16	89439613	89439713	6661230	0	-	0.43	(0.419,0.45]	chr16	666753	79	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	110	2	2.68635	3.45441	4.22247	0.0876314	0.0018006	0.183437	0.0214959
chr17	15463266	15463365	6860067	0	-	0.474747	(0.45,0.485]	chr17	695067	98	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.3351	3.4538	4.5725	0.0926859	0.0438295	0.188571	0.153511
chr2	235505240	235505340	1062648	0	+	0.49	(0.485,0.523]	chr2	115651	100	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	99	2	3.38908	3.45368	3.51828	0.0214738	0.0107186	0.100517	0.0700744
chr1	161222719	161222817	607251	0	-	0.438776	(0.419,0.45]	chr1	72268	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	APOA2	ENSG00000158874.11	ENST00000463812.1:ENST00000468465.5:ENST00000367990.7:ENST00000481413.1:ENST00000481511.5:ENST00000470459.6:ENST00000464492.5:ENST00000491350.1:ENST00000463273.5:ENST00000469730.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	185	2	2.81249	3.4535549999999997	4.09462	0.0311168	0.00248506	0.119936	0.0267262
chr19	933242	933341	7185178	0	+	0.717172	(0.58,1]	chr19	730741	1	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	41	2	2.50987	3.453035	4.3962	0.0865901	0.0250928	0.182221	0.114418
chr19	7906041	7906134	7199663	0	+	0.645161	(0.58,1]	chr19	734083	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MAP2K7	ENSG00000076984.18	ENST00000397981.7:ENST00000397979.4:ENST00000468058.1:ENST00000397983.7:ENST00000475022.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	41	2	2.50987	3.453035	4.3962	0.0865901	0.0250928	0.182221	0.114418
chr3	171795641	171795740	1958418	0	-	0.40404	(0.39,0.419]	chr3	199093	53	INTRON	INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9:ENST00000498278.5:ENST00000440204.5:ENST00000460926.1:ENST00000497307.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	173	2	2.74672	3.452685	4.15865	0.0126711	0.00870321	0.0771625	0.0626159
chr6	144848611	144848709	3025586	0	+	0.408163	(0.39,0.419]	chr6	295591	14	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000367526.8	protein_coding	protein_coding	protein_coding	protein_coding	3	143	2	3.03479	3.451735	3.86868	0.0142603	0.0106145	0.0818174	0.069619
chr6	158573319	158573419	3064028	0	+	0.68	(0.58,1]	chr6	297689	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	14	506	2	3.31112	3.451705	3.59229	0.00316163	2.75947e-4	0.035969	0.0057314
chr2	61538157	61538256	1158378	0	-	0.69697	(0.58,1]	chr2	126972	7	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000401558.7:ENST00000428210.5:ENST00000406957.5:ENST00000443240.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	251	2	3.40994	3.45151	3.49308	0.0046356	8.66068e-4	0.0443883	0.0128446
chr16	8681962	8682061	6381209	0	+	0.555556	(0.523,0.58]	chr16	631145	69	INTRON	INTRON	ABAT	ENSG00000183044.12	ENST00000564714.5:ENST00000268251.13:ENST00000563992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	2.24954	3.4505550000000005	4.65157	0.0787008	0.0500176	0.175203	0.161481
chr4	1327426	1327526	1995313	0	+	0.58	(0.523,0.58]	chr4	203265	4	SS3_PROX	SS3_PROX:INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	48	2	2.24954	3.4505550000000005	4.65157	0.0787008	0.0500176	0.175203	0.161481
chr10	79202786	79202885	4533386	0	+	0.535354	(0.523,0.58]	chr10	432445	7	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.66054	3.450135	4.23973	0.0806884	0.0444247	0.177452	0.153511
chr16	85521580	85521680	6518287	0	+	0.57	(0.523,0.58]	chr16	646391	1623	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.66054	3.450135	4.23973	0.0806884	0.0444247	0.177452	0.153511
chr11	70779056	70779156	5062072	0	-	0.53	(0.523,0.58]	chr11	492701	612	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	100	2	3.31719	3.449255	3.58132	0.0193579	0.0124719	0.0954964	0.0765738
chr10	28560432	28560532	4469689	0	+	0.38	(0.36,0.39]	chr10	427649	220	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	104	2	3.33756	3.448805	3.56005	0.0331257	0.00847528	0.123313	0.0607325
chr2	175663955	175664055	959986	0	+	0.38	(0.36,0.39]	chr2	105443	690	INTRON	INTRON	ENSG00000289349	ENSG00000289349.1	ENST00000692740.1:ENST00000685522.1	lncRNA	lncRNA	lncRNA	lncRNA	2	104	2	3.33756	3.448805	3.56005	0.0331257	0.00847528	0.123313	0.0607325
chr17	66314617	66314717	6783550	0	+	0.41	(0.39,0.419]	chr17	684226	81	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000583361.1:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	52	2	2.33678	3.448105	4.55943	0.104562	0.0461697	0.19835	0.155334
chr2	152439876	152439976	926510	0	+	0.41	(0.39,0.419]	chr2	103058	1038	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.33678	3.448105	4.55943	0.104562	0.0461697	0.19835	0.155334
chr2	11304224	11304324	1088997	0	-	0.4	(0.39,0.419]	chr2	118747	161	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	143	2	2.88831	3.4480450000000005	4.00778	0.0352934	0.00291522	0.127188	0.0298627
chr16	70668926	70669026	6616199	0	-	0.39	(0.36,0.39]	chr16	662604	30	INTRON	INTRON	MTSS2	ENSG00000132613.16	ENST00000338779.11	protein_coding	protein_coding	protein_coding	protein_coding	4	166	2	3.08523	3.44795	3.81067	0.015515	0.00562138	0.0849828	0.0462153
chr15	98804481	98804581	6194891	0	+	0.51	(0.485,0.523]	chr15	609667	196	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1:ENST00000557938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	96	2	3.35343	3.447805	3.54218	0.0282341	0.00747698	0.11427	0.0555092
chr9	124492929	124493029	4402653	0	-	0.76	(0.58,1]	chr9	419813	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.07697	3.447795	4.81862	0.0924023	0.0102696	0.188571	0.0678072
chr5	177089249	177089349	2597780	0	+	0.55	(0.523,0.58]	chr5	257892	3	SS3_PROX	SS3_PROX:INTRON	FGFR4	ENSG00000160867.15	ENST00000393648.6:ENST00000503708.5:ENST00000502906.5:ENST00000514472.1:ENST00000292408.9:ENST00000507708.1:ENST00000510911.5:ENST00000513166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	94	2	3.0773	3.4477	3.8181	0.0438724	0.0037097	0.139792	0.0349741
chr17	72558322	72558422	6963894	0	-	0.47	(0.45,0.485]	chr17	710389	239	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	6	223	2	3.42699	3.44728	3.46757	0.0265227	9.27841e-4	0.111258	0.0135455
chr21	44868709	44868808	7678529	0	-	0.484848	(0.45,0.485]	chr21	802773	27	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	444	2	2.95398	3.446415	3.93885	0.0115759	0.00228845	0.0732749	0.0302507
chr7	47350440	47350539	3587295	0	-	0.494949	(0.485,0.523]	chr7	346030	37	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	3	129	2	2.55961	3.44626	4.33291	0.0519015	9.5504e-4	0.148503	0.0137043
chr17	77485924	77486024	6805241	0	+	0.48	(0.45,0.485]	chr17	686821	19	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	100	2	3.42699	3.445075	3.46316	0.0265227	0.00952494	0.111258	0.0650078
chr20	37507421	37507519	7559842	0	-	0.459184	(0.45,0.485]	chr20	789576	36	INTRON	INTRON	BLCAP	ENSG00000166619.15	ENST00000411780.1:ENST00000467603.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	97	2	3.09257	3.443525	3.79448	0.0447818	0.00430151	0.140478	0.0387835
chr17	38725897	38725997	6729342	0	+	0.58	(0.523,0.58]	chr17	676371	4	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	MLLT6	ENSG00000275023.5	ENST00000621332.5:ENST00000619356.1:ENST00000615741.1:ENST00000615441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	210	2	2.70541	3.4435000000000002	4.18159	0.00663351	0.00569698	0.0540577	0.046716
chr6	144348299	144348398	3020493	0	+	0.494949	(0.485,0.523]	chr6	295148	36	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1:ENST00000628146.2:ENST00000421035.2	protein_coding	protein_coding	protein_coding	protein_coding	8	326	2	2.95618	3.44303	3.92988	0.0135853	4.28956e-4	0.0795314	0.00782718
chr19	942020	942119	7185266	0	+	0.717172	(0.58,1]	chr19	730741	89	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	184	2	3.113	3.442555	3.77211	0.0102654	8.95399e-4	0.0684871	0.0131712
chr6	34588776	34588875	3124193	0	-	0.434343	(0.419,0.45]	chr6	304700	16	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	3	142	2	3.26754	3.44216	3.61678	0.0229694	0.00641295	0.102982	0.0503748
chr6	2162031	2162131	3084502	0	-	0.34	(0.33,0.36]	chr6	299521	369	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.24295	3.4421299999999997	4.64131	0.0867669	0.053728	0.182221	0.167824
chr2	240624685	240624785	1075190	0	+	0.71	(0.58,1]	chr2	116654	53	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	4	136	2	2.73167	3.4420200000000003	4.15237	0.00910814	0.00456039	0.0631967	0.0438198
chr2	222871450	222871550	1037806	0	+	0.51	(0.485,0.523]	chr2	113181	55	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	102	2	3.21778	3.441995	3.66621	0.0166798	0.0157761	0.0884836	0.0884237
chr7	47349743	47349842	3587288	0	-	0.444444	(0.419,0.45]	chr7	346030	30	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	105	2	3.05795	3.441985	3.82602	0.0529681	0.00478241	0.149208	0.0415621
chr22	24099653	24099750	7695357	0	+	0.494845	(0.485,0.523]	chr22	805517	10	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	67	2	1.8649	3.441045	5.01719	0.0580088	0.0480495	0.175217	0.144601
chr1	165900598	165900698	263215	0	+	0.58	(0.523,0.58]	chr1	31081	22	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1:ENST00000462329.5:ENST00000464197.5:ENST00000469256.6:ENST00000470820.1:ENST00000463772.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	128	2	2.58039	3.4409799999999997	4.30157	0.0503562	0.00101591	0.148216	0.0143256
chr8	133285592	133285691	4084180	0	-	0.636364	(0.58,1]	chr8	388350	3	INTRON	INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000676005.1:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1:ENST00000674839.1:ENST00000676064.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	180	2	2.30154	3.4408950000000003	4.58025	0.0262384	0.0172566	0.110324	0.0923809
chr7	47363682	47363781	3587428	0	-	0.50505	(0.485,0.523]	chr7	346030	170	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	95	2	2.85123	3.4408250000000002	4.03042	0.0614408	0.00217615	0.158506	0.0243911
chr22	46950710	46950810	7746902	0	+	0.55	(0.523,0.58]	chr22	812232	369	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	94	2	2.918	3.439915	3.96183	0.0558053	0.00255427	0.154188	0.0273114
chr11	62708798	62708887	5045829	0	-	0.550562	(0.523,0.58]	chr11	489780	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	BSCL2:HNRNPUL2-BSCL2	ENSG00000168000.16:ENSG00000234857.2	ENST00000683892.1:ENST00000403734.2:ENST00000679883.1:ENST00000405837.5:ENST00000524862.6:ENST00000531524.5:ENST00000532818.5:ENST00000464544.1:ENST00000530009.1:ENST00000528874.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.29891	3.4397450000000003	4.58058	0.0860403	0.0454288	0.181766	0.154539
chr11	70739386	70739486	5061675	0	-	0.67	(0.58,1]	chr11	492701	215	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	83	2	3.35086	3.43904	3.52722	0.0218816	0.00611467	0.101015	0.0489549
chr11	96307486	96307586	5113211	0	-	0.51	(0.485,0.523]	chr11	496566	2136	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	2	108	2	3.02337	3.438815	3.85426	0.023933	0.0119901	0.111785	0.0743424
chr3	160501803	160501903	1951406	0	-	0.39	(0.36,0.39]	chr3	198362	69	UTR3	UTR3:EXON_MRNA	KPNA4	ENSG00000186432.10	ENST00000334256.9:ENST00000676866.1:ENST00000676799.1:ENST00000678630.1:ENST00000676958.1:ENST00000678020.1:ENST00000678765.1:ENST00000678839.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	275	2	2.99505	3.4388	3.88255	0.0295278	4.62568e-4	0.116079	0.00825119
chr2	11578731	11578831	720660	0	+	0.51	(0.485,0.523]	chr2	84131	3	SS5_PROX	SS5_PROX:INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000263834.9:ENST00000389825.7:ENST00000381483.6:ENST00000234142.9	protein_coding	protein_coding	protein_coding	protein_coding	3	131	2	3.07952	3.43865	3.79778	0.0436257	0.00121976	0.139286	0.0163074
chr3	78934809	78934909	1836852	0	-	0.33	(0.29,0.33]	chr3	188602	1876	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	2	95	2	3.38863	3.43851	3.48839	0.0255093	0.00869049	0.108923	0.0612699
chr15	24987095	24987194	6063716	0	+	0.333333	(0.33,0.36]	chr15	595387	48	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	5	218	2	3.32681	3.438325	3.54984	0.0157023	0.0015678	0.0852875	0.0194695
chr20	21239082	21239181	7448906	0	+	0.454545	(0.45,0.485]	chr20	775009	59	INTRON	INTRON	KIZ	ENSG00000088970.16	ENST00000619574.4:ENST00000620891.4:ENST00000611685.4:ENST00000616848.4:ENST00000619189.5:ENST00000616679.4:ENST00000619179.4:ENST00000621366.1:ENST00000451772.5:ENST00000419359.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	69	2	2.28369	3.43797	4.59225	0.0812615	0.0259502	0.178194	0.116361
chr11	70781054	70781154	5062092	0	-	0.54	(0.523,0.58]	chr11	492701	632	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	46	2	2.53438	3.43778	4.34118	0.0957531	0.0372357	0.189038	0.139793
chr6	169671356	169671455	3304602	0	-	0.555556	(0.523,0.58]	chr6	319945	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	46	2	2.53438	3.43778	4.34118	0.0957531	0.0372357	0.189038	0.139793
chr8	122787945	122788045	3909715	0	+	0.53	(0.523,0.58]	chr8	373449	56	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.53438	3.43778	4.34118	0.0957531	0.0372357	0.189038	0.139793
chr16	81680322	81680422	6510114	0	+	0.63	(0.58,1]	chr16	645979	13	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	3	116	2	2.86246	3.43767	4.01288	0.0112778	0.00608214	0.0717097	0.0515813
chr16	81625294	81625394	6509550	0	+	0.53	(0.523,0.58]	chr16	645926	32	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	4	158	2	2.67959	3.4375750000000003	4.19556	0.0126057	0.00646345	0.0768036	0.0531182
chr6	158040532	158040631	3059903	0	+	0.383838	(0.36,0.39]	chr6	297390	65	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	188	2	3.17405	3.43748	3.70091	0.0220785	0.00205242	0.101608	0.0234951
chr15	24986896	24986995	6063714	0	+	0.444444	(0.419,0.45]	chr15	595387	46	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	12	540	2	3.31891	3.436905	3.5549	0.0097159	6.94121e-4	0.0663312	0.010981
chr16	52509412	52509512	6589483	0	-	0.28	[0,0.29]	chr16	658702	334	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	86	2	3.19982	3.436835	3.67385	0.029619	0.00495574	0.116079	0.0425347
chr10	75765003	75765103	4523815	0	+	0.36	(0.33,0.36]	chr10	432277	214	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	2.37729	3.4365050000000004	4.49572	0.103264	0.0415835	0.197541	0.148959
chr1	43554141	43554241	106980	0	+	0.59	(0.58,1]	chr1	13191	2	SS5_PROX	SS5_PROX:INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	97	2	2.91493	3.435905	3.95688	0.0259506	0.00681628	0.116361	0.0548279
chr2	216001056	216001156	1369294	0	-	0.43	(0.419,0.45]	chr2	145845	42	INTRON	INTRON	MREG:PECR	ENSG00000118242.16:ENSG00000115425.14	ENST00000263268.11:ENST00000620139.4:ENST00000439791.5:ENST00000424992.5:ENST00000420348.1:ENST00000442122.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	51	2	2.5763	3.43486	4.29342	0.100818	0.0526662	0.196131	0.167062
chr10	124935760	124935860	4605604	0	+	0.45	(0.419,0.45]	chr10	440370	181	INTRON	INTRON	ENSG00000249456	ENSG00000249456.1	ENST00000508096.1	lncRNA	lncRNA	lncRNA	lncRNA	3	62	2	1.93608	3.4344900000000003	4.9329	0.0716557	0.0690938	0.19362	0.168159
chr6	158027961	158028060	3059772	0	+	0.656566	(0.58,1]	chr6	297374	7	EXON_MRNA	EXON_MRNA:INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2:ENST00000640569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	135	2	2.55843	3.43424	4.31005	0.0300956	6.7911e-4	0.117601	0.0108488
chrX	71216590	71216685	7903338	0	+	0.557895	(0.523,0.58]	chrX	827967	16	UTR5	UTR5:EXON_MRNA:INTRON	GJB1	ENSG00000169562.13	ENST00000674844.1:ENST00000674549.1:ENST00000374029.2:ENST00000675209.1:ENST00000675368.1:ENST00000647424.1:ENST00000675609.1:ENST00000646835.1:ENST00000447581.2	protein_coding	protein_coding	protein_coding	protein_coding	2	95	2	3.35121	3.43392	3.51663	0.0284134	0.00782908	0.114906	0.0574276
chr1	112706076	112706164	563031	0	-	0.590909	(0.58,1]	chr1	64621	6	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	RHOC	ENSG00000155366.17	ENST00000369633.6:ENST00000369642.7:ENST00000339083.12:ENST00000285735.6:ENST00000468093.5:ENST00000369638.6:ENST00000369637.5:ENST00000369636.6:ENST00000484280.6:ENST00000369632.6:ENST00000425265.6:ENST00000436685.6:ENST00000528831.5:ENST00000484054.3:ENST00000478447.1:ENST00000527563.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	85	2	3.35051	3.43274	3.51497	0.0161632	0.00953058	0.0872435	0.0650078
chr10	79222072	79222172	4533582	0	+	0.54	(0.523,0.58]	chr10	432457	54	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	3	125	2	3.30553	3.43271	3.55989	0.0200759	0.00452075	0.0972041	0.0400651
chr9	129496188	129496288	4250736	0	+	0.66	(0.58,1]	chr9	404717	1	SS5_PROX	SS5_PROX:INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	52	2	1.85952	3.4326849999999998	5.00585	0.0671431	0.0323732	0.192171	0.121593
chr1	8748338	8748438	395039	0	-	0.47	(0.45,0.485]	chr1	45069	453	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	159	2	2.81349	3.432225	4.05096	0.00974812	0.00915267	0.0664239	0.064285
chr7	45890347	45890447	3370037	0	+	0.46	(0.45,0.485]	chr7	325161	4	SS3_PROX	SS3_PROX:INTRON	IGFBP1	ENSG00000146678.10	ENST00000457280.5:ENST00000275525.8:ENST00000468955.1	protein_coding	protein_coding	protein_coding	protein_coding	2	117	2	2.87326	3.43168	3.9901	0.033576	0.010198	0.133139	0.0684871
chr22	15818876	15818972	7682913	0	+	0.5625	(0.523,0.58]	chr22	803567	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000383038.7:ENST00000447898.5:ENST00000607933.1	lncRNA	lncRNA	lncRNA	lncRNA	5	205	2	3.21923	3.431545	3.64386	0.0173863	9.65564e-4	0.0901374	0.0138447
chr14	91220442	91220523	5899560	0	+	0.641975	(0.58,1]	chr14	576434	1	CDS	CDS:EXON_MRNA:INTRON	DGLUCY	ENSG00000133943.21	ENST00000520328.5:ENST00000256324.15:ENST00000521077.6:ENST00000523837.5:ENST00000518868.5:ENST00000523816.5:ENST00000428926.6:ENST00000522322.5:ENST00000523771.5:ENST00000525393.6:ENST00000412671.6:ENST00000523461.5:ENST00000517306.5:ENST00000522816.1:ENST00000523576.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	109	2	3.22338	3.431075	3.63877	0.0127766	0.00438486	0.0769397	0.0393407
chr20	20460134	20460234	7533799	0	-	0.55	(0.523,0.58]	chr20	786266	476	INTRON	INTRON	RALGAPA2	ENSG00000188559.16	ENST00000202677.12:ENST00000430436.5	protein_coding	protein_coding	protein_coding	protein_coding	5	178	2	2.53311	3.4306600000000005	4.32821	0.0131299	0.00503935	0.0788835	0.0464868
chr11	589812	589910	4784916	0	+	0.653061	(0.58,1]	chr11	457994	20	INTRON	INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	180	2	2.99305	3.43056	3.86807	0.0130736	6.66992e-4	0.0782396	0.0107349
chr10	96142456	96142555	4560212	0	+	0.373737	(0.36,0.39]	chr10	435112	68	INTRON	INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	358	2	2.91766	3.4305250000000003	3.94339	0.020138	3.88884e-4	0.0973365	0.00732219
chr10	75508186	75508286	4521240	0	+	0.53	(0.523,0.58]	chr10	432249	566	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	1.95511	3.4300550000000003	4.905	0.0607183	0.0563605	0.179481	0.154188
chr2	235521225	235521325	1062808	0	+	0.32	(0.29,0.33]	chr2	115651	260	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	45	2	2.52708	3.4297950000000004	4.33251	0.0944237	0.0396433	0.188571	0.143388
chr13	97337930	97338029	5631963	0	+	0.353535	(0.33,0.36]	chr13	553188	31	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.28913	3.4297400000000002	4.57035	0.0945416	0.0492629	0.188571	0.160725
chr3	48427000	48427097	1766704	0	-	0.484536	(0.45,0.485]	chr3	182283	13	INTRON	INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	295	2	3.00574	3.429565	3.85339	0.0059439	0.00279611	0.0506158	0.0289213
chr7	112205301	112205401	3692561	0	-	0.64	(0.58,1]	chr7	354969	2008	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	151	2	2.65649	3.42894	4.20139	0.00779582	0.00411606	0.0572687	0.0414433
chr19	16379926	16380025	7343730	0	-	0.525253	(0.523,0.58]	chr19	760674	23	INTRON	INTRON	EPS15L1	ENSG00000127527.14	ENST00000602022.5:ENST00000455140.7:ENST00000592031.5:ENST00000248070.10:ENST00000535753.6:ENST00000594975.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	93	2	3.16507	3.42844	3.69181	0.0382777	0.00510333	0.131324	0.0433857
chr9	124495926	124496025	4402684	0	-	0.373737	(0.36,0.39]	chr9	419817	24	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.15686	3.42809	4.69932	0.0877431	0.0642245	0.184676	0.183437
chrX	133655235	133655335	8112708	0	-	0.33	(0.29,0.33]	chrX	845480	583	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000692074.1:ENST00000667662.1:ENST00000666017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.26842	3.428055	4.58769	0.0806047	0.0490718	0.177452	0.160725
chr6	16749675	16749775	3104343	0	-	0.5	(0.485,0.523]	chr6	300898	3	SS5_PROX	SS5_PROX:INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6:ENST00000495178.1:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1:ENST00000676138.1:ENST00000467008.5:ENST00000498374.1:ENST00000492857.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	125	2	3.40249	3.4278649999999997	3.45324	0.0260491	0.00312715	0.109673	0.0311915
chr9	133470070	133470168	4259757	0	+	0.663265	(0.58,1]	chr9	406088	15	UTR3	UTR3:EXON_MRNA	CACFD1	ENSG00000160325.15	ENST00000540581.5:ENST00000542192.5:ENST00000291722.11:ENST00000316948.9	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.56085	3.427695	4.29454	0.0803939	0.0305531	0.177452	0.126768
chr9	133857282	133857381	4428971	0	-	0.585859	(0.58,1]	chr9	423304	226	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	1	41	2	2.56085	3.427695	4.29454	0.0803939	0.0305531	0.177452	0.126768
chr20	8593315	8593415	7431201	0	+	0.53	(0.523,0.58]	chr20	773698	2213	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	99	2	3.27377	3.427545	3.58132	0.0193579	0.0137592	0.0954964	0.0814923
chr6	128495046	128495146	3256921	0	-	0.32	(0.29,0.33]	chr6	315230	28	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000524534.5:ENST00000525459.1:ENST00000392449.4:ENST00000532751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	124	2	3.34562	3.426945	3.50827	0.0208279	0.00426363	0.0990379	0.0384752
chr1	1305333	1305432	380899	0	-	0.616162	(0.58,1]	chr1	43017	13	EXON_MRNA	EXON_MRNA:INTRON	ACAP3	ENSG00000131584.19	ENST00000492936.5:ENST00000354700.10:ENST00000472541.5:ENST00000354980.7:ENST00000479108.5:ENST00000438966.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	40	2	2.45703	3.426615	4.3962	0.0933945	0.0250928	0.188571	0.114418
chr11	68337862	68337962	4882336	0	+	0.6	(0.58,1]	chr11	470542	247	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.45703	3.426615	4.3962	0.0933945	0.0250928	0.188571	0.114418
chr15	73684899	73684999	6150479	0	+	0.69	(0.58,1]	chr15	604907	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CD276	ENSG00000103855.18	ENST00000567189.5:ENST00000537340.6:ENST00000318424.9:ENST00000318443.10:ENST00000560786.6:ENST00000558689.5:ENST00000561213.5:ENST00000560928.5:ENST00000563584.5:ENST00000561416.5:ENST00000560995.5:ENST00000567582.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	40	2	2.45703	3.426615	4.3962	0.0933945	0.0250928	0.188571	0.114418
chr17	314342	314441	6821419	0	-	0.626263	(0.58,1]	chr17	689582	78	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	40	2	2.45703	3.426615	4.3962	0.0933945	0.0250928	0.188571	0.114418
chr14	89255710	89255810	6026655	0	-	0.54	(0.523,0.58]	chr14	591432	245	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	152	2	2.8503	3.426435	4.00257	0.0092178	0.00828864	0.0644666	0.0597346
chr1	2230820	2230917	4518	0	+	0.546392	(0.523,0.58]	chr1	1044	7	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	5	204	2	3.31893	3.426265	3.5336	0.0145658	0.00132473	0.0824453	0.0173147
chr20	32479100	32479199	7543659	0	-	0.535354	(0.523,0.58]	chr20	787372	40	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	73	2	2.50981	3.4254949999999997	4.34118	0.0561618	0.0372357	0.154188	0.139793
chr18	6195986	6196086	7111677	0	-	0.56	(0.523,0.58]	chr18	723858	237	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000400105.6:ENST00000317931.12:ENST00000400104.7	protein_coding	protein_coding	protein_coding	protein_coding	2	106	2	3.03457	3.4254499999999997	3.8163299999999998	0.0231444	0.012872	0.109883	0.0772995
chr17	17821719	17821819	6865738	0	-	0.57	(0.523,0.58]	chr17	695915	8	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	127	2	2.73279	3.4250550000000004	4.11732	0.039547	0.00168626	0.133109	0.0204375
chr19	2332012	2332112	7189439	0	+	0.66	(0.58,1]	chr19	731774	12	INTRON	INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.15496	3.42503	4.6951	0.0548868	0.0521567	0.168717	0.148503
chr10	75499392	75499492	4521152	0	+	0.56	(0.523,0.58]	chr10	432249	478	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.19842	3.424995	4.65157	0.0787008	0.0551586	0.175203	0.169218
chr14	19095706	19095806	5754297	0	+	0.5	(0.485,0.523]	chr14	564239	19	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000619938.1:ENST00000644980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	6	191	2	2.66597	3.4248950000000002	4.18382	0.00764426	0.00657684	0.0563517	0.0537852
chr1	23063222	23063321	60669	0	+	0.474747	(0.45,0.485]	chr1	6321	37	INTRON	INTRON	KDM1A	ENSG00000004487.18	ENST00000692214.1:ENST00000686934.1:ENST00000689853.1:ENST00000465864.2:ENST00000691256.1:ENST00000688122.1:ENST00000692056.1:ENST00000692853.1:ENST00000689366.1:ENST00000686270.1:ENST00000685102.1:ENST00000690627.1:ENST00000686771.1:ENST00000692209.1:ENST00000686339.1:ENST00000691813.1:ENST00000693156.1:ENST00000688235.1:ENST00000692975.1:ENST00000687202.1:ENST00000691682.1:ENST00000691404.1:ENST00000691694.1:ENST00000688680.1:ENST00000356634.7:ENST00000400181.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	131	2	2.60106	3.4245099999999997	4.24796	0.0508702	0.00132616	0.148503	0.0173248
chr20	36859073	36859173	7557092	0	-	0.5	(0.485,0.523]	chr20	789156	1	SS5_PROX	SS5_PROX:INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	2	93	2	2.95352	3.42416	3.8948	0.0528263	0.00310434	0.14912	0.0311614
chr22	32821493	32821592	7717824	0	+	0.484848	(0.45,0.485]	chr22	807776	190	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	1	50	2	2.73276	3.42361	4.11446	0.0754102	0.0592571	0.176157	0.173278
chr11	65438550	65438649	4871727	0	+	0.373737	(0.36,0.39]	chr11	468177	159	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	18	781	2	2.47197	3.423425	4.37488	0.00769133	0.00119576	0.0566697	0.0209554
chr11	2687198	2687298	4972183	0	-	0.54	(0.523,0.58]	chr11	481197	790	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	5	76	2	1.88419	3.42308	4.96197	0.0521137	0.0470504	0.156915	0.148503
chr2	222863220	222863317	1037722	0	+	0.381443	(0.36,0.39]	chr2	113175	11	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	187	2	2.98556	3.422895	3.86023	0.0142826	0.00517927	0.0819292	0.043878
chr17	17827881	17827981	6865802	0	-	0.59	(0.58,1]	chr17	695923	39	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	4	136	2	2.64367	3.42253	4.20139	0.0114303	0.00411606	0.0724212	0.0414433
chr7	130901541	130901641	3710991	0	-	0.51	(0.485,0.523]	chr7	356708	168	INTRON	INTRON	ENSG00000226380	ENSG00000226380.9	ENST00000432045.6:ENST00000447307.5:ENST00000418546.1	lncRNA	lncRNA	lncRNA	lncRNA	3	125	2	3.32827	3.422475	3.51668	0.0294165	0.00264036	0.116079	0.0279436
chr14	30921304	30921404	5950941	0	-	0.31	(0.29,0.33]	chr14	583071	18	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000366206.2:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	172	2	2.77263	3.421925	4.07122	0.0355733	5.82233e-4	0.127529	0.00971715
chr19	8241063	8241151	7200293	0	+	0.590909	(0.58,1]	chr19	734193	1	SS3_PROX	SS3_PROX:INTRON	CERS4	ENSG00000090661.12	ENST00000561008.5:ENST00000558268.5:ENST00000558331.5:ENST00000561053.5:ENST00000559490.5:ENST00000559450.5:ENST00000251363.10:ENST00000559336.5:ENST00000595722.5:ENST00000558501.5:ENST00000560412.1:ENST00000558877.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	1	42	2	2.6577	3.42144	4.18518	0.0695799	0.0374658	0.167028	0.139793
chr9	133958702	133958802	4429992	0	-	0.56	(0.523,0.58]	chr9	423331	191	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	94	2	3.32604	3.421335	3.51663	0.0296013	0.00782908	0.116079	0.0574276
chr1	44226825	44226925	459436	0	-	0.21	[0,0.29]	chr1	55285	48	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	87	2	2.80363	3.421105	4.03858	0.0568711	0.00189492	0.154343	0.0221912
chr14	19304705	19304800	5928409	0	-	0.547368	(0.523,0.58]	chr14	580404	3	INTRON	INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	149	2	3.17807	3.421025	3.66398	0.0167995	0.00354058	0.0884836	0.0342231
chr7	101823475	101823575	3434043	0	+	0.49	(0.485,0.523]	chr7	332510	41	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000607092.1:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	48	2	2.33451	3.420425	4.50634	0.0939553	0.0426546	0.188571	0.149802
chr16	89300813	89300876	6659814	0	-	0.349206	(0.33,0.36]	chr16	666650	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	164	2	3.3445	3.420385	3.49627	0.0307153	0.00181255	0.119442	0.0215848
chr5	32157564	32157663	2630490	0	-	0.333333	(0.33,0.36]	chr5	261026	133	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	390	2	2.56786	3.420355	4.27285	0.02956	1.31305e-4	0.116079	0.00335139
chr8	122830704	122830804	3910151	0	+	0.47	(0.45,0.485]	chr8	373483	143	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6	protein_coding	protein_coding	protein_coding	protein_coding	1	48	2	2.61676	3.42014	4.22352	0.0883035	0.0496712	0.183874	0.160725
chr1	45636521	45636620	467727	0	-	0.444444	(0.419,0.45]	chr1	55928	9	INTRON	INTRON	GPBP1L1	ENSG00000159592.11	ENST00000290795.7:ENST00000355105.8	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.21736	3.420045	4.62273	0.103601	0.058705	0.197541	0.176098
chr13	33213999	33214099	5684737	0	-	0.44	(0.419,0.45]	chr13	558196	81	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	2.21736	3.420045	4.62273	0.103601	0.058705	0.197541	0.176098
chr16	22426012	22426112	6566824	0	-	0.49	(0.485,0.523]	chr16	655122	4	SS5_PROX	SS5_PROX:INTRON	CDR2:RRN3P3	ENSG00000140743.8:ENSG00000257122.5	ENST00000564542.5:ENST00000563573.5:ENST00000569045.1:ENST00000551766.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	4	75	2	2.33315	3.419745	4.50634	0.0939553	0.0213218	0.188571	0.104644
chr1	12592899	12592999	402532	0	-	0.65	(0.58,1]	chr1	46222	119	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	84	2	3.35051	3.4196999999999997	3.48889	0.016972	0.00953058	0.0889149	0.0650078
chr12	57111109	57111190	5439768	0	-	0.62963	(0.58,1]	chr12	535338	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	STAT6	ENSG00000166888.12	ENST00000300134.8:ENST00000651176.1:ENST00000553533.2:ENST00000554764.6:ENST00000538913.6:ENST00000556155.5:ENST00000537215.6:ENST00000454075.7:ENST00000640254.2:ENST00000556259.5:ENST00000553499.5:ENST00000553397.5:ENST00000553275.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.21459	3.4193100000000003	4.62403	0.0578275	0.0487458	0.160725	0.154343
chr22	20084210	20084307	7686494	0	+	0.494845	(0.485,0.523]	chr22	804119	32	INTRON	INTRON	DGCR8	ENSG00000128191.16	ENST00000383024.6:ENST00000351989.8:ENST00000457069.1	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.1863	3.41914	4.65198	0.0783889	0.0567965	0.175203	0.172995
chr17	80562274	80562374	6809075	0	+	0.45	(0.419,0.45]	chr17	687806	161	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	106	2	2.72124	3.4189849999999997	4.1167299999999996	0.0837482	0.00235149	0.181508	0.0258525
chr1	17588979	17589078	54069	0	+	0.525253	(0.523,0.58]	chr1	5465	1	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5	protein_coding	protein_coding	protein_coding	protein_coding	7	267	2	2.83126	3.4188599999999996	4.00646	0.0048681	0.00402768	0.0420241	0.0411954
chr3	48424053	48424144	1766671	0	-	0.659341	(0.58,1]	chr3	182272	7	CDS	CDS:EXON_MRNA:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000456774.5:ENST00000449094.5:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	152	2	2.16578	3.41867	4.67156	0.0493936	2.20504e-4	0.146402	0.00485102
chr17	18926674	18926773	6693796	0	+	0.454545	(0.45,0.485]	chr17	672024	23	INTRON	INTRON	PRPSAP2	ENSG00000141127.15	ENST00000610773.4:ENST00000492129.5:ENST00000419071.6:ENST00000536323.5:ENST00000268835.7:ENST00000395656.6:ENST00000542013.5:ENST00000574451.5:ENST00000460724.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	99	2	3.38668	3.418225	3.44977	0.0255605	0.0113463	0.109062	0.0719708
chr16	52537050	52537150	6589760	0	-	0.38	(0.36,0.39]	chr16	658709	171	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	101	2	2.87382	3.41721	3.9606	0.0653866	0.00326569	0.162385	0.0321244
chr12	120998867	120998967	5341127	0	+	0.49	(0.485,0.523]	chr12	521577	2	SS3_PROX	SS3_PROX:INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000560968.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	125	2	3.27658	3.41703	3.55748	0.0319818	0.00236572	0.121593	0.0259199
chr14	23513440	23513533	5757087	0	+	0.569892	(0.523,0.58]	chr14	564961	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ZFHX2-AS1	ENSG00000157306.14	ENST00000556354.5:ENST00000556613.1:ENST00000553985.1:ENST00000557568.1:ENST00000554403.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	138	2	2.68048	3.4168700000000003	4.15326	0.020416	0.00699158	0.102668	0.0555241
chr12	120983168	120983267	5340962	0	+	0.555556	(0.523,0.58]	chr12	521546	37	INTRON	INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000400024.6:ENST00000560968.5:ENST00000402929.5:ENST00000535955.5:ENST00000538626.2:ENST00000538646.5:ENST00000541924.5:ENST00000544574.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	172	2	2.67911	3.4161850000000005	4.15326	0.00914907	0.00699158	0.0633341	0.0555241
chr14	103684776	103684845	5924681	0	+	0.376812	(0.36,0.39]	chr14	579655	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000380038.7:ENST00000334553.11:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8:ENST00000537046.6:ENST00000553325.5:ENST00000555856.1:ENST00000535194.2:ENST00000553680.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	190	2	3.20019	3.416085	3.63198	0.0208059	0.00298701	0.0990286	0.0303739
chr8	127175062	127175162	4066738	0	-	0.29	[0,0.29]	chr8	387403	3	INTRON	INTRON	CASC19	ENSG00000254166.3	ENST00000642100.1:ENST00000641912.1:ENST00000641421.1:ENST00000641701.1:ENST00000641991.1:ENST00000641588.1:ENST00000642088.1:ENST00000641425.1:ENST00000641706.1:ENST00000641496.1:ENST00000641013.1:ENST00000641262.1:ENST00000641174.1:ENST00000642102.1:ENST00000641615.1:ENST00000641487.1:ENST00000641321.1:ENST00000641719.1:ENST00000642010.1:ENST00000641578.1:ENST00000641510.1:ENST00000641604.1:ENST00000641056.1:ENST00000641642.1:ENST00000641362.1:ENST00000641365.1:ENST00000642077.1:ENST00000641179.1:ENST00000642126.1:ENST00000641411.1:ENST00000641357.1:ENST00000641746.2:ENST00000641073.1:ENST00000641298.1:ENST00000641001.1:ENST00000641674.2:ENST00000641828.1:ENST00000641029.1:ENST00000641547.1:ENST00000642134.1:ENST00000641696.1:ENST00000641480.1:ENST00000641187.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	115	2	3.29134	3.41599	3.54064	0.0252424	0.00221307	0.108073	0.0246879
chr14	19303817	19303915	5928400	0	-	0.581633	(0.58,1]	chr14	580401	53	EXON_LNCRNA	EXON_LNCRNA:INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	19	640	2	3.08468	3.41585	3.74702	0.00464074	1.02111e-4	0.0444327	0.00277629
chr11	70740385	70740485	5061685	0	-	0.57	(0.523,0.58]	chr11	492701	225	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	178	2	2.46571	3.41573	4.36575	0.0154458	0.00469354	0.0869771	0.0447173
chr11	61306409	61306508	5041625	0	-	0.535354	(0.523,0.58]	chr11	488849	20	INTRON	INTRON	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000540166.5:ENST00000679855.1:ENST00000539332.2:ENST00000681368.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	48	2	2.70025	3.4154299999999997	4.13061	0.0763549	0.0533354	0.174544	0.167062
chr3	48413269	48413369	1766535	0	-	0.61	(0.58,1]	chr3	182194	2	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000485535.5:ENST00000456774.5:ENST00000473996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	200	2	3.38238	3.415365	3.44835	0.00791482	9.43681e-4	0.0596361	0.0135796
chr17	56897336	56897434	6931174	0	-	0.55102	(0.523,0.58]	chr17	706281	10	INTRON	INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000570473.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	47	2	2.24954	3.4150600000000004	4.58058	0.0860403	0.0500176	0.181766	0.161481
chr6	34596981	34597081	3124276	0	-	0.52	(0.485,0.523]	chr6	304704	60	INTRON	INTRON	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8:ENST00000374021.1	protein_coding	protein_coding	protein_coding	protein_coding	1	45	2	2.49197	3.4148449999999997	4.33772	0.10114	0.03818	0.196131	0.140822
chr2	158580256	158580356	936193	0	+	0.51	(0.485,0.523]	chr2	103397	16	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1:ENST00000481115.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	48	2	2.70247	3.4148199999999997	4.12717	0.0759932	0.0545434	0.174411	0.167824
chr16	52474037	52474136	6589128	0	-	0.444444	(0.419,0.45]	chr16	658695	51	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	103	2	3.03039	3.41466	3.79893	0.0550674	0.00509983	0.153454	0.0433857
chr16	85591228	85591328	6518985	0	+	0.54	(0.523,0.58]	chr16	646396	345	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	2	92	2	3.1364	3.414105	3.69181	0.0400336	0.00510333	0.134064	0.0433857
chr6	31670558	31670656	2893771	0	+	0.469388	(0.45,0.485]	chr6	282714	5	UTR5	UTR5:EXON_MRNA	LY6G5B	ENSG00000240053.8	ENST00000375864.4:ENST00000409525.1	protein_coding	protein_coding	protein_coding	protein_coding	5	76	2	1.76628	3.41383	5.06138	0.0618961	0.0492008	0.180615	0.146142
chr7	73594077	73594171	3602788	0	-	0.62766	(0.58,1]	chr7	347600	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	67	2	1.76652	3.41361	5.0607	0.0541697	0.029633	0.167824	0.116079
chr11	65429563	65429663	4871637	0	+	0.26	[0,0.29]	chr11	468177	69	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	61	2214	2	3.31493	3.4134	3.51187	0.00206668	1.63221e-4	0.0285954	0.0039138
chr13	98260601	98260701	5634837	0	+	0.44	(0.419,0.45]	chr13	553480	154	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	3	153	2	2.71246	3.41301	4.11356	0.0223142	0.0102332	0.108193	0.0684871
chr12	132528488	132528587	5352900	0	+	0.69697	(0.58,1]	chr12	523670	1	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	3	110	2	2.80931	3.41277	4.01623	0.0273431	0.00161478	0.112372	0.0199131
chr16	75363832	75363931	6645525	0	-	0.40404	(0.39,0.419]	chr16	664519	9	INTRON	INTRON	CFDP1	ENSG00000153774.9	ENST00000283882.4	protein_coding	protein_coding	protein_coding	protein_coding	2	101	2	2.86613	3.412395	3.95866	0.0665161	0.00329322	0.162469	0.0323365
chr17	55314926	55315026	6757613	0	+	0.39	(0.36,0.39]	chr17	681719	3	SS3_PROX	SS3_PROX:INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	312	2	3.35376	3.4123200000000002	3.47088	0.00943678	0.00199147	0.0654583	0.0229948
chr17	72559619	72559719	6963907	0	-	0.49	(0.485,0.523]	chr17	710389	252	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	3	126	2	3.16729	3.4109949999999998	3.6547	0.0380541	0.00181524	0.131324	0.0215865
chrX	44899485	44899585	7871936	0	+	0.42	(0.419,0.45]	chrX	825082	251	INTRON	INTRON	KDM6A	ENSG00000147050.17	ENST00000611820.5:ENST00000377967.9:ENST00000674541.1:ENST00000382899.9:ENST00000536777.6:ENST00000674564.1:ENST00000543216.6:ENST00000675577.1:ENST00000674739.1:ENST00000674867.1:ENST00000676085.1:ENST00000674586.1:ENST00000676133.1:ENST00000675514.1:ENST00000674659.1:ENST00000676062.1:ENST00000676343.1:ENST00000675816.1:ENST00000675440.1:ENST00000683425.1:ENST00000682908.1:ENST00000683021.1:ENST00000684352.1:ENST00000621147.5:ENST00000475233.1:ENST00000675157.1:ENST00000676389.1:ENST00000675182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	167	2	3.18547	3.41033	3.63519	0.0223138	0.0046237	0.102264	0.0408228
chr17	15470114	15470213	6860136	0	-	0.59596	(0.58,1]	chr17	695071	26	INTRON	INTRON	TVP23C-CDRT4:CDRT4	ENSG00000259024.6:ENSG00000239704.11	ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	80	2	3.06331	3.41032	3.75733	0.036259	0.0033279	0.127941	0.0325742
chr7	47473809	47473909	3588546	0	-	0.32	(0.29,0.33]	chr7	346123	207	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	4	151	2	2.36484	3.41031	4.45578	0.0506176	7.04866e-4	0.148503	0.0111395
chr9	129613354	129613454	4250964	0	+	0.67	(0.58,1]	chr9	404743	38	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.07697	3.410215	4.74346	0.0924023	0.0121457	0.188571	0.0754623
chr5	139652364	139652464	2549684	0	+	0.61	(0.58,1]	chr5	253168	8	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	2	81	2	2.83384	3.41007	3.9863	0.0529065	0.0017591	0.14912	0.0211077
chr12	125121142	125121241	5349513	0	+	0.686869	(0.58,1]	chr12	523174	14	EXON_MRNA	EXON_MRNA:INTRON	AACS	ENSG00000081760.17	ENST00000316519.11:ENST00000441247.6:ENST00000316543.14:ENST00000539251.5:ENST00000538851.5:ENST00000545511.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	109	2	2.68962	3.4098699999999997	4.13012	0.0339076	0.00116063	0.1246	0.0157704
chr16	81540182	81540282	6508695	0	+	0.52	(0.485,0.523]	chr16	645911	443	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	3	125	2	3.11352	3.409675	3.70583	0.0155717	0.00747179	0.0849828	0.0555092
chr2	3459930	3460013	711033	0	+	0.590361	(0.58,1]	chr2	83178	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000479955.5:ENST00000497597.5:ENST00000473348.5:ENST00000461577.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	81	2	3.29173	3.4094749999999996	3.52722	0.0243429	0.00611467	0.106588	0.0489549
chr15	25086076	25086175	6064759	0	+	0.515152	(0.485,0.523]	chr15	595562	8	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	SNHG14	ENSG00000224078.15	ENST00000640631.2:ENST00000662834.1:ENST00000667393.1:ENST00000669673.1:ENST00000668750.1:ENST00000664545.1:ENST00000656510.1:ENST00000654223.1:ENST00000549804.7:ENST00000660717.1:ENST00000661253.1:ENST00000670542.1:ENST00000664256.1:ENST00000655153.1:ENST00000666289.1:ENST00000657237.1:ENST00000670394.1:ENST00000667925.1:ENST00000653407.1:ENST00000671374.1:ENST00000668953.1:ENST00000665819.1:ENST00000666606.1:ENST00000660542.1:ENST00000667531.1:ENST00000654902.1:ENST00000656600.1:ENST00000662370.1:ENST00000661738.1:ENST00000553108.2:ENST00000660956.1:ENST00000665906.1:ENST00000546682.5:ENST00000655258.1:ENST00000667788.1:ENST00000657285.1:ENST00000655746.1:ENST00000661541.1:ENST00000668419.1:ENST00000658859.1:ENST00000661889.1:ENST00000666022.1	lncRNA	lncRNA	lncRNA	lncRNA	2	93	2	3.27658	3.40938	3.54218	0.0319818	0.00747698	0.121593	0.0555092
chr1	2296387	2296487	5176	0	+	0.5	(0.485,0.523]	chr1	1052	480	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.23742	3.4092100000000003	4.581	0.085711	0.0515447	0.181766	0.165949
chr3	146077667	146077764	1936147	0	-	0.412371	(0.39,0.419]	chr3	196953	9	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PLOD2	ENSG00000152952.12	ENST00000282903.10:ENST00000461497.5:ENST00000360060.7:ENST00000494950.5:ENST00000478436.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	119	2	2.90127	3.40867	3.91607	0.0339406	0.0131714	0.133629	0.0785398
chr4	73439901	73440001	2057126	0	+	0.27	[0,0.29]	chr4	210325	12	INTRON	INTRON	AFP	ENSG00000081051.8	ENST00000395792.7:ENST00000226359.2	protein_coding	protein_coding	protein_coding	protein_coding	4	154	2	3.19308	3.4082600000000003	3.62344	0.0138273	0.0017564	0.0803573	0.0211077
chr2	72705607	72705707	1186996	0	-	0.48	(0.45,0.485]	chr2	128741	1296	INTRON	INTRON	EXOC6B	ENSG00000144036.16	ENST00000272427.11:ENST00000634650.1:ENST00000410104.1:ENST00000410112.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	95	2	2.90749	3.4078850000000003	3.90828	0.0588897	0.00323103	0.15607	0.0319521
chr11	87254769	87254869	4912557	0	+	0.48	(0.45,0.485]	chr11	474136	177	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding	1	46	2	2.49062	3.407765	4.32491	0.104221	0.0418883	0.19835	0.149021
chr10	79222272	79222372	4533584	0	+	0.6	(0.58,1]	chr10	432457	56	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	5	184	2	3.03816	3.40745	3.77674	0.00397733	0.00396764	0.0408115	0.0368027
chr15	101400671	101400770	6363558	0	-	0.424242	(0.419,0.45]	chr15	627258	17	INTRON	INTRON	PCSK6	ENSG00000140479.18	ENST00000398185.6:ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000611967.4:ENST00000615296.4:ENST00000559417.2:ENST00000331826.12	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.1235	3.406915	4.69033	0.0958674	0.0693342	0.194077	0.189038
chr3	13202625	13202725	1691168	0	-	0.45	(0.419,0.45]	chr3	176566	381	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.1235	3.406915	4.69033	0.0958674	0.0693342	0.194077	0.189038
chr1	8774019	8774119	395297	0	-	0.46	(0.45,0.485]	chr1	45073	203	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	2	98	2	3.38668	3.406835	3.42699	0.0265227	0.0113463	0.111258	0.0719708
chr7	92665641	92665741	3637253	0	-	0.35	(0.33,0.36]	chr7	350304	235	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.24295	3.40665	4.57035	0.0945416	0.053728	0.188571	0.167824
chr9	134372539	134372639	4261149	0	+	0.56	(0.523,0.58]	chr9	406314	4	SS5_PROX	SS5_PROX:INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2:ENST00000356384.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	63	2	2.12522	3.406535	4.68785	0.0984283	0.0194172	0.192982	0.0994526
chr19	47228057	47228157	7392361	0	-	0.7	(0.58,1]	chr19	768100	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	6	199	2	3.38811	3.4058200000000003	3.42353	0.008949	8.3008e-4	0.0637469	0.012496
chr16	89835121	89835220	6525490	0	+	0.585859	(0.58,1]	chr16	647498	60	INTRON	INTRON	SPIRE2	ENSG00000204991.11	ENST00000564878.5:ENST00000378247.8:ENST00000393062.6:ENST00000563972.1:ENST00000566337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	205	2	3.22338	3.405765	3.58815	0.00438486	0.00377613	0.0396337	0.0393407
chr3	98736788	98736888	1516254	0	+	0.38	(0.36,0.39]	chr3	161540	28	INTRON	INTRON	ST3GAL6	ENSG00000064225.13	ENST00000489112.5:ENST00000265261.11:ENST00000460774.5:ENST00000469105.5:ENST00000466482.5:ENST00000462152.5:ENST00000486249.5:ENST00000497008.5:ENST00000486334.6:ENST00000394162.5:ENST00000613264.5:ENST00000480133.1:ENST00000465004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	2.25073	3.405745	4.56076	0.103289	0.054166	0.197541	0.167824
chr2	222914721	222914820	1038248	0	+	0.363636	(0.36,0.39]	chr2	113229	31	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000542810.1:ENST00000540115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	400	2	3.1507	3.4057250000000003	3.66075	0.00671299	0.00194684	0.0541693	0.0225726
chr17	6708850	6708949	6846174	0	-	0.535354	(0.523,0.58]	chr17	693344	13	INTRON	INTRON	SLC13A5	ENSG00000141485.17	ENST00000433363.7:ENST00000293800.10:ENST00000381074.8:ENST00000573648.5:ENST00000572094.1:ENST00000572352.5:ENST00000576323.1:ENST00000575230.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	96	2	3.31719	3.40541	3.49363	0.0224494	0.0124719	0.102751	0.0765738
chr6	140785633	140785733	3279587	0	-	0.41	(0.39,0.419]	chr6	317145	1218	INTRON	INTRON	ENSG00000234147	ENSG00000234147.3	ENST00000650553.2	lncRNA	lncRNA	lncRNA	lncRNA	2	102	2	2.73134	3.4048999999999996	4.07846	0.0798958	0.00244164	0.177037	0.0263656
chr16	12170916	12171016	6391577	0	+	0.53	(0.523,0.58]	chr16	631959	353	INTRON	INTRON	SNX29	ENSG00000048471.14	ENST00000566228.6:ENST00000564791.5	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.09041	3.404815	4.71922	0.0721601	0.0674148	0.192827	0.168159
chr8	118103587	118103687	4049659	0	-	0.56	(0.523,0.58]	chr8	386022	865	INTRON	INTRON	EXT1	ENSG00000182197.13	ENST00000378204.7:ENST00000437196.1:ENST00000436216.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.09041	3.404815	4.71922	0.0721601	0.0674148	0.192827	0.168159
chr12	26529151	26529251	5398515	0	-	0.38	(0.36,0.39]	chr12	528527	335	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	4	161	2	3.08523	3.40466	3.72409	0.0179032	0.00562138	0.0918791	0.0462153
chr17	43542479	43542579	6909593	0	-	0.56	(0.523,0.58]	chr17	703271	56	INTRON	INTRON	ETV4	ENSG00000175832.13	ENST00000538265.5:ENST00000319349.10:ENST00000393664.6:ENST00000545954.5:ENST00000545089.5:ENST00000591713.5:ENST00000590236.5:ENST00000585508.5:ENST00000587151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	205	2	2.50654	3.4045900000000002	4.30264	0.00956579	0.00528859	0.0652427	0.047841
chr9	124489184	124489284	4402614	0	-	0.62	(0.58,1]	chr9	419805	58	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	2	80	2	2.91446	3.4035200000000003	3.89258	0.0464528	0.00229214	0.143232	0.0253494
chr2	100850215	100850315	858713	0	+	0.3	(0.29,0.33]	chr2	97321	31	INTRON	INTRON	NPAS2	ENSG00000170485.17	ENST00000335681.10:ENST00000427413.5	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.21906	3.403375	4.58769	0.0806047	0.0539212	0.177452	0.167824
chr17	82001244	82001344	6815309	0	+	0.68	(0.58,1]	chr17	688640	40	INTRON	INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	145	2	2.91982	3.4031700000000003	3.88652	0.0223021	6.2995e-4	0.102226	0.0102646
chr11	2666006	2666106	4971971	0	-	0.59	(0.58,1]	chr11	481197	578	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	2	80	2	3.19823	3.40315	3.60807	0.0287301	0.00495688	0.115888	0.0425347
chr16	50622505	50622604	6452154	0	+	0.525253	(0.523,0.58]	chr16	639918	4	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	5	169	2	2.75636	3.402905	4.04945	0.00846308	0.00751992	0.0617717	0.0558181
chr2	235512333	235512433	1062719	0	+	0.53	(0.523,0.58]	chr2	115651	171	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	171	2	3.31893	3.402905	3.48688	0.0145658	0.00280274	0.0824453	0.0289791
chr16	52470066	52470165	6589088	0	-	0.414141	(0.39,0.419]	chr16	658695	11	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	100	2	3.18264	3.4026199999999998	3.6226	0.042233	0.0073612	0.13762	0.055174
chr11	64306757	64306846	4868821	0	+	0.550562	(0.523,0.58]	chr11	467348	7	UTR5	UTR5:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ESRRA	ENSG00000173153.17	ENST00000406310.6:ENST00000000442.11:ENST00000677967.1:ENST00000539594.5:ENST00000405666.5:ENST00000468670.2	protein_coding	protein_coding	protein_coding	protein_coding	2	93	2	3.32604	3.40246	3.47888	0.0296013	0.00856566	0.116079	0.0612
chr2	134450041	134450141	898748	0	+	0.53	(0.523,0.58]	chr2	101298	13	UTR3	UTR3:EXON_MRNA	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.29891	3.4024200000000002	4.50593	0.094303	0.0454288	0.188571	0.154539
chr17	2655144	2655243	6667060	0	+	0.30303	(0.29,0.33]	chr17	667936	8	INTRON	INTRON	PAFAH1B1	ENSG00000007168.14	ENST00000576586.5:ENST00000397195.10:ENST00000676201.1:ENST00000575477.5:ENST00000675621.1:ENST00000676353.1:ENST00000674717.1:ENST00000675202.1:ENST00000675764.1:ENST00000674608.1:ENST00000676077.1:ENST00000676098.1:ENST00000572915.6:ENST00000570400.1:ENST00000675430.1:ENST00000675331.1:ENST00000676188.1:ENST00000574816.5:ENST00000675390.1:ENST00000676456.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	91	2	2.95538	3.40221	3.84904	0.0510239	0.00359491	0.148503	0.0342681
chr9	134342328	134342428	4260846	0	+	0.62	(0.58,1]	chr9	406311	153	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	40	2	2.50987	3.4022049999999995	4.29454	0.0865901	0.0305531	0.182221	0.126768
chr6	36679617	36679706	2906385	0	+	0.764045	(0.58,1]	chr6	285235	3	INTRON	INTRON	CDKN1A	ENSG00000124762.14	ENST00000615513.4:ENST00000448526.6:ENST00000459970.1:ENST00000405375.5:ENST00000244741.10:ENST00000373711.3:ENST00000478800.1:ENST00000462537.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	1.91069	3.40007	4.88945	0.0607034	0.0388928	0.179468	0.131324
chr16	89293194	89293294	6659737	0	-	0.54	(0.523,0.58]	chr16	666648	10	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	170	2	2.71198	3.399935	4.08789	0.0408931	5.15395e-4	0.136191	0.00894015
chr14	104665099	104665190	6057551	0	-	0.472527	(0.45,0.485]	chr14	594663	5	EXON_LNCRNA	EXON_LNCRNA	LINC02280	ENSG00000260792.1	ENST00000564585.1	lncRNA	lncRNA	lncRNA	lncRNA	1	47	2	2.57593	3.399725	4.22352	0.093234	0.0496712	0.188571	0.160725
chr16	16183616	16183710	6556707	0	-	0.478723	(0.45,0.485]	chr16	653132	3	INTRON	INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.08776	3.3994299999999997	4.7111	0.0781398	0.0696113	0.194713	0.175203
chr17	44206498	44206596	6911336	0	-	0.469388	(0.45,0.485]	chr17	703607	16	UTR3	UTR3:EXON_MRNA	UBTF	ENSG00000108312.15	ENST00000302904.8:ENST00000343638.9:ENST00000436088.6:ENST00000527034.5:ENST00000533177.5	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.08776	3.3994299999999997	4.7111	0.0781398	0.0696113	0.194713	0.175203
chr10	79114019	79114118	4532495	0	+	0.666667	(0.58,1]	chr10	432420	444	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	1	39	2	2.40217	3.399185	4.3962	0.100879	0.0250928	0.196131	0.114418
chr4	716435	716535	1993792	0	+	0.63	(0.58,1]	chr4	203088	101	INTRON	INTRON	PCGF3	ENSG00000185619.18	ENST00000419774.5:ENST00000362003.9:ENST00000475288.5:ENST00000470161.6:ENST00000427463.5:ENST00000482726.5:ENST00000400151.6:ENST00000430644.5:ENST00000484141.5:ENST00000440452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	39	2	2.40217	3.399185	4.3962	0.100879	0.0250928	0.196131	0.114418
chr12	3227446	3227545	5160051	0	+	0.515152	(0.485,0.523]	chr12	501358	117	INTRON	INTRON	TSPAN9	ENSG00000011105.14	ENST00000537971.5:ENST00000444315.6:ENST00000011898.10:ENST00000649909.1:ENST00000640568.1:ENST00000407263.2:ENST00000431374.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	74	2	2.55961	3.397945	4.23628	0.0519015	0.045492200000000003	0.154539	0.148503
chr16	67967745	67967841	6610229	0	-	0.458333	(0.45,0.485]	chr16	661575	10	INTRON	INTRON	SLC12A4	ENSG00000124067.17	ENST00000422611.6:ENST00000316341.8:ENST00000572037.5:ENST00000570802.5:ENST00000576616.5:ENST00000573023.6:ENST00000576377.1:ENST00000571299.5:ENST00000572010.5:ENST00000576462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	102	2	3.1756	3.397855	3.62011	0.0192961	0.0180699	0.0954446	0.0953579
chr1	2231015	2231112	4520	0	+	0.670103	(0.58,1]	chr1	1044	9	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	3	106	2	3.38782	3.397745	3.40767	0.0197265	0.00277379	0.0958249	0.0287134
chr6	3148133	3148231	2828620	0	+	0.612245	(0.58,1]	chr6	277604	73	INTRON	INTRON	BPHL	ENSG00000137274.13	ENST00000434640.5:ENST00000430655.6:ENST00000424847.6:ENST00000433912.5:ENST00000380379.10:ENST00000490918.5:ENST00000380375.4:ENST00000488487.2:ENST00000423798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	41	2	2.61009	3.397635	4.18518	0.0747426	0.0374658	0.172361	0.139793
chr17	55277083	55277183	6757229	0	+	0.34	(0.33,0.36]	chr17	681704	86	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	499	2	2.82449	3.39745	3.97041	0.00331268	0.00295768	0.0368376	0.0301103
chr7	103923680	103923780	3663035	0	-	0.52	(0.485,0.523]	chr7	353511	61	INTRON	INTRON	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1:ENST00000681401.1:ENST00000679689.1:ENST00000681182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	2.14204	3.39701	4.65198	0.0783889	0.042209000000000003	0.175203	0.149195
chr5	139651666	139651765	2549677	0	+	0.585859	(0.58,1]	chr5	253168	1	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	5	176	2	3.23167	3.396725	3.56178	0.00626219	0.00227861	0.0523832	0.025238
chr8	22558192	22558292	3771874	0	+	0.58	(0.523,0.58]	chr8	362924	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SORBS3	ENSG00000120896.14	ENST00000240123.12:ENST00000517500.5:ENST00000517535.5:ENST00000523402.5:ENST00000520563.3:ENST00000524057.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	1	47	2	2.66054	3.395575	4.13061	0.0806884	0.0533354	0.177452	0.167062
chr10	79162832	79162932	4532985	0	+	0.66	(0.58,1]	chr10	432438	3	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.02776	3.3952999999999998	4.76284	0.0700362	0.0471737	0.195209	0.143232
chr7	1066389	1066489	3526891	0	-	0.65	(0.58,1]	chr7	340585	112	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	42	2	2.02776	3.3952999999999998	4.76284	0.0700362	0.0471737	0.195209	0.143232
chr10	87879023	87879123	4541642	0	+	0.35	(0.33,0.36]	chr10	433139	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PTEN	ENSG00000171862.12	ENST00000688308.1:ENST00000693560.1:ENST00000371953.8:ENST00000688158.1:ENST00000686459.1:ENST00000462694.1:ENST00000416679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	97	2	3.29545	3.394315	3.49318	0.0331843	0.00940277	0.123484	0.0648045
chr22	42646440	42646540	7821295	0	-	0.66	(0.58,1]	chr22	820388	4	SS5_PROX	SS5_PROX:INTRON	CYB5R3	ENSG00000100243.22	ENST00000693367.1:ENST00000352397.10:ENST00000361740.9:ENST00000692152.1:ENST00000693363.1:ENST00000689795.1:ENST00000686523.1:ENST00000407332.6:ENST00000687198.1:ENST00000689001.1:ENST00000687183.1:ENST00000691295.1:ENST00000407623.8:ENST00000402438.6:ENST00000690835.1:ENST00000689195.1:ENST00000688244.1:ENST00000690993.1:ENST00000689239.1:ENST00000692344.1:ENST00000438270.2:ENST00000686129.1:ENST00000466276.2:ENST00000693716.1:ENST00000688004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	119	2	2.6194	3.39415	4.1689	0.0202577	0.00440581	0.102015	0.0430291
chr5	883742	883839	2608214	0	-	0.649485	(0.58,1]	chr5	259478	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000466684.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	60	2	1.96033	3.39393	4.82753	0.0427798	0.0426346	0.149802	0.13762
chr17	55323522	55323620	6757705	0	+	0.377551	(0.36,0.39]	chr17	681735	28	UTR3	UTR3:EXON_MRNA	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000575345.5	protein_coding	protein_coding	protein_coding	protein_coding	5	231	2	3.03129	3.39318	3.75507	0.00815324	0.00642014	0.0605301	0.0503748
chr6	37823114	37823214	2908875	0	+	0.51	(0.485,0.523]	chr6	285643	27	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	5	216	2	2.69323	3.39308	4.09293	0.042042	2.62652e-4	0.137338	0.00552802
chr20	8324750	8324850	7428512	0	+	0.36	(0.33,0.36]	chr20	773693	180	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	49	2	2.68323	3.392615	4.102	0.0814187	0.0642879	0.184676	0.178482
chr20	417219	417280	7414583	0	+	0.590164	(0.58,1]	chr20	772328	1	CDS	CDS:EXON_MRNA:SS3_PROX:INTRON	RBCK1	ENSG00000125826.21	ENST00000411647.5:ENST00000382214.7:ENST00000415942.5:ENST00000640614.1:ENST00000441733.5:ENST00000353660.7:ENST00000356286.10:ENST00000382181.2:ENST00000414880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	145	2	2.94726	3.39259	3.83792	0.00865536	0.00347143	0.0623824	0.0336158
chr7	138545480	138545580	3502863	0	+	0.35	(0.33,0.36]	chr7	337534	63	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	2.28913	3.3924250000000002	4.49572	0.103264	0.0492629	0.197541	0.160725
chr2	48325470	48325570	792959	0	+	0.28	[0,0.29]	chr2	90400	103	INTRON	INTRON	FOXN2	ENSG00000170802.17	ENST00000413569.5:ENST00000340553.8	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.42686	3.391825	4.35679	0.0991518	0.0332741	0.194208	0.133139
chr16	46902280	46902379	6442606	0	+	0.525253	(0.523,0.58]	chr16	639007	11	INTRON	INTRON	GPT2	ENSG00000166123.14	ENST00000340124.9:ENST00000562132.5:ENST00000440783.2	protein_coding	protein_coding	protein_coding	protein_coding	2	91	2	3.19317	3.3912199999999997	3.58927	0.0366207	0.00656975	0.128697	0.0510026
chr2	11585469	11585565	720733	0	+	0.40625	(0.39,0.419]	chr2	84146	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000263834.9:ENST00000381483.6:ENST00000234142.9	protein_coding	protein_coding	protein_coding	protein_coding	5	219	2	3.22094	3.3903	3.55966	0.0206652	0.00166172	0.0985166	0.0202819
chr10	31928682	31928779	4661834	0	-	0.742268	(0.58,1]	chr10	444988	1	UTR5	UTR5:EXON_MRNA	ARHGAP12	ENSG00000165322.18	ENST00000344936.7:ENST00000375245.8:ENST00000396144.8:ENST00000375250.9	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.15496	3.389495	4.62403	0.0578275	0.0548868	0.168717	0.154343
chr14	19304314	19304414	5928405	0	-	0.55	(0.523,0.58]	chr14	580403	3	SS3_PROX	SS3_PROX:INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	5	171	2	2.55489	3.388985	4.22308	0.0124509	0.00614007	0.0765738	0.0517628
chr2	134449842	134449942	898746	0	+	0.63	(0.58,1]	chr2	101298	11	UTR3	UTR3:EXON_MRNA	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	8	85	2	1.56291	3.3883400000000004	5.21377	0.0621124	0.0230012	0.181122	0.102982
chr22	50424213	50424312	7754485	0	+	0.606061	(0.58,1]	chr22	812542	2	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9:ENST00000401672.7:ENST00000427222.2	protein_coding	protein_coding	protein_coding	protein_coding	2	81	2	3.37954	3.38815	3.39676	0.0207688	0.0085026	0.098873	0.0608246
chr2	165937584	165937671	1301059	0	-	0.264368	[0,0.29]	chr2	139565	7	EXON_MRNA	EXON_MRNA:INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000679840.1:ENST00000680448.1:ENST00000681606.1:ENST00000679671.1:ENST00000464374.5:ENST00000680698.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	153	2	2.86792	3.3876749999999998	3.90743	0.00794485	0.00521311	0.0596361	0.0441603
chr9	134343027	134343127	4260853	0	+	0.61	(0.58,1]	chr9	406311	160	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	111	2	2.98228	3.387315	3.79235	0.0198344	0.00302484	0.096302	0.0305643
chr12	65193764	65193864	5252722	0	+	0.53	(0.523,0.58]	chr12	512136	220	INTRON	INTRON	LEMD3	ENSG00000174106.3	ENST00000308330.3:ENST00000541171.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	91	2	3.22074	3.3870750000000003	3.55341	0.0350559	0.00716661	0.12704	0.0541871
chrX	74244095	74244194	8068706	0	-	0.363636	(0.36,0.39]	chrX	841746	13	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1	lncRNA	lncRNA	lncRNA	lncRNA	5	182	2	2.86495	3.386545	3.90814	0.013177	0.00699368	0.0785398	0.0535352
chr7	73599325	73599425	3602850	0	-	0.54	(0.523,0.58]	chr7	347629	4	SS5_PROX	SS5_PROX:INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	124	2	3.01186	3.3864650000000003	3.76107	0.0141879	0.00944557	0.0816012	0.0650078
chr11	18010639	18010736	5015365	0	-	0.42268	(0.419,0.45]	chr11	484704	1	INTRON	INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528200.5:ENST00000532265.5:ENST00000529728.5:ENST00000530613.5:ENST00000532389.5:ENST00000530925.5:ENST00000533328.5:ENST00000532212.5:ENST00000524716.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	62	2	2.08138	3.3858550000000003	4.69033	0.0958674	0.0528422	0.189038	0.167062
chr16	81565876	81565976	6508952	0	+	0.64	(0.58,1]	chr16	645911	700	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	2.58616	3.38567	4.18518	0.0406424	0.0374658	0.139793	0.135868
chr12	124862433	124862488	5537339	0	-	0.472727	(0.45,0.485]	chr12	546098	2	UTR3	UTR3:EXON_MRNA:INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000415380.6:ENST00000681117.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000539320.3:ENST00000545493.1:ENST00000541661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	48	2	2.65647	3.385465	4.11446	0.0837071	0.0592571	0.181508	0.176157
chr2	10367277	10367377	719072	0	+	0.48	(0.45,0.485]	chr2	84032	125	INTRON	INTRON	HPCAL1	ENSG00000115756.13	ENST00000423674.5:ENST00000307845.8:ENST00000381765.7:ENST00000419810.6:ENST00000622018.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	48	2	2.65647	3.385465	4.11446	0.0837071	0.0592571	0.181508	0.176157
chr15	24986698	24986797	6063712	0	+	0.474747	(0.45,0.485]	chr15	595387	44	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	7	286	2	3.30586	3.3851750000000003	3.46449	0.0111851	0.00122738	0.071741	0.0163989
chr6	11192244	11192344	3093280	0	-	0.52	(0.485,0.523]	chr6	300414	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NEDD9	ENSG00000111859.17	ENST00000379446.10:ENST00000620854.4:ENST00000448183.6:ENST00000504387.5:ENST00000505589.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	99	2	3.12385	3.3849150000000003	3.64598	0.0193526	0.0172726	0.0994526	0.0897247
chr13	112970455	112970555	5655325	0	+	0.43	(0.419,0.45]	chr13	555120	6	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7	protein_coding	protein_coding	protein_coding	protein_coding	1	52	2	2.68635	3.384795	4.08324	0.0876314	0.0727147	0.199502	0.183437
chr1	230070503	230070603	359451	0	+	0.6	(0.58,1]	chr1	40623	27	INTRON	INTRON	GALNT2	ENSG00000143641.10	ENST00000494106.1:ENST00000366672.5:ENST00000488903.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	84	2	3.20215	3.38396	3.56577	0.0146864	0.0136092	0.0826843	0.0811697
chr14	70027243	70027343	5872655	0	+	0.62	(0.58,1]	chr14	573363	34	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.18715	3.3837	4.58025	0.0781652	0.0172566	0.175203	0.0923809
chr6	143442373	143442472	3281877	0	-	0.444444	(0.419,0.45]	chr6	317273	5	INTRON	INTRON	ADAT2	ENSG00000189007.16	ENST00000237283.9	protein_coding	protein_coding	protein_coding	protein_coding	2	104	2	2.65059	3.38366	4.1167299999999996	0.0917577	0.00235149	0.188571	0.0258525
chr11	9289239	9289337	4990945	0	-	0.367347	(0.36,0.39]	chr11	483068	3	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	191	2	3.27891	3.383445	3.48798	0.0130075	0.00594355	0.0779928	0.0479866
chr17	72470145	72470233	6962998	0	-	0.590909	(0.58,1]	chr17	710338	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000648907.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000650483.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000647593.1:ENST00000649311.1:ENST00000457958.7:ENST00000649881.1:ENST00000649647.1:ENST00000648401.1:ENST00000648520.1:ENST00000649250.1:ENST00000648069.1:ENST00000647953.1:ENST00000650051.1:ENST00000648176.2:ENST00000648403.1:ENST00000649269.1:ENST00000577828.6:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1:ENST00000650510.1:ENST00000649013.1:ENST00000647850.1:ENST00000648500.1:ENST00000580175.2:ENST00000650121.1:ENST00000650499.1	lncRNA	lncRNA	lncRNA	lncRNA	3	52	2	2.1424	3.383215	4.62403	0.0578275	0.0374477	0.154343	0.139793
chr17	57440090	57440190	6761611	0	+	0.54	(0.523,0.58]	chr17	682129	76	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	90	2	2.918	3.383005	3.84801	0.0558053	0.00343547	0.154188	0.0333396
chr16	89298568	89298667	6659791	0	-	0.585859	(0.58,1]	chr16	666648	64	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	106	2	3.23007	3.382745	3.53542	0.0271644	0.00181405	0.112113	0.0215865
chr5	119533568	119533667	2518776	0	+	0.454545	(0.45,0.485]	chr5	250206	23	EXON_MRNA	EXON_MRNA:INTRON	HSD17B4	ENSG00000133835.18	ENST00000683936.1:ENST00000509514.6:ENST00000682996.1:ENST00000684214.1:ENST00000683974.1:ENST00000414835.7:ENST00000442060.7:ENST00000510025.7:ENST00000515320.5:ENST00000646058.1:ENST00000682445.1:ENST00000515235.6:ENST00000518349.6:ENST00000683371.1:ENST00000683390.1:ENST00000645832.1:ENST00000644146.1:ENST00000646355.1:ENST00000647335.1:ENST00000682531.1:ENST00000683265.1:ENST00000646554.1:ENST00000684160.1:ENST00000682626.1:ENST00000647342.1:ENST00000643250.1:ENST00000645099.1:ENST00000684131.1:ENST00000513628.5:ENST00000683549.1:ENST00000645702.1:ENST00000683996.1:ENST00000683372.1:ENST00000522415.5:ENST00000683335.1:ENST00000683476.1:ENST00000509951.5:ENST00000509606.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	47	2	2.19184	3.38217	4.5725	0.0926859	0.0575893	0.188571	0.17499
chr12	23950368	23950468	5388533	0	-	0.52	(0.485,0.523]	chr12	528205	1	SS5_PROX	SS5_PROX:INTRON	SOX5	ENSG00000134532.19	ENST00000646273.1:ENST00000545921.5:ENST00000367206.7:ENST00000659413.1:ENST00000541847.5:ENST00000441133.2:ENST00000536729.2:ENST00000446891.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	203	2	2.95352	3.38197	3.81042	0.0528263	4.00485e-4	0.14912	0.00746999
chr16	20684675	20684775	6416305	0	+	0.42	(0.419,0.45]	chr16	634386	26	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	360	2	2.92315	3.381485	3.83982	0.0352944	3.60273e-4	0.127188	0.00694438
chr20	21235016	21235115	7448865	0	+	0.484848	(0.45,0.485]	chr20	775009	18	INTRON	INTRON	KIZ	ENSG00000088970.16	ENST00000619574.4:ENST00000620891.4:ENST00000611685.4:ENST00000616848.4:ENST00000619189.5:ENST00000616679.4:ENST00000619179.4:ENST00000621366.1:ENST00000451772.5:ENST00000419359.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	144	2	3.29953	3.3813449999999996	3.46316	0.0161581	0.00952494	0.0872435	0.0650078
chr11	57304165	57304263	5038258	0	-	0.612245	(0.58,1]	chr11	488042	8	INTRON	INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	81	2	2.6577	3.38009	4.10248	0.0695799	0.0012583	0.167028	0.0167083
chr16	89294886	89294985	6659754	0	-	0.565657	(0.523,0.58]	chr16	666648	27	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	227	2	3.29114	3.379995	3.46885	0.0153066	0.00106767	0.0849828	0.0148869
chr2	102155081	102155175	863940	0	+	0.287234	[0,0.29]	chr2	97803	7	INTRON	INTRON	IL1R1	ENSG00000115594.12	ENST00000452403.5:ENST00000409929.5:ENST00000424272.5:ENST00000409589.5:ENST00000409329.5:ENST00000450319.5:ENST00000428279.5:ENST00000442590.5:ENST00000410023.6:ENST00000409288.5:ENST00000413623.5:ENST00000430171.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	68	2	2.21551	3.37913	4.54275	0.0681032	0.0263577	0.164448	0.11802
chr8	100714864	100714961	4029361	0	-	0.309278	(0.29,0.33]	chr8	384712	12	INTRON	INTRON	PABPC1	ENSG00000070756.17	ENST00000677140.1:ENST00000677787.1:ENST00000678709.1:ENST00000676662.1:ENST00000677765.1:ENST00000677892.1:ENST00000522720.2:ENST00000520804.2:ENST00000521865.6:ENST00000677478.1:ENST00000677380.1:ENST00000520142.2:ENST00000677775.1:ENST00000678954.1:ENST00000676655.1:ENST00000676976.1:ENST00000318607.10:ENST00000679197.1:ENST00000519100.6:ENST00000519004.5:ENST00000522387.5:ENST00000522658.6:ENST00000678822.1:ENST00000523555.6:ENST00000610907.2:ENST00000519596.5:ENST00000519622.5:ENST00000517921.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	56	2	1.96584	3.378415	4.79099	0.061706	0.0604455	0.178778	0.158854
chr15	77046044	77046142	6331964	0	-	0.295918	(0.29,0.33]	chr15	624408	48	UTR3	UTR3:EXON_MRNA	TSPAN3	ENSG00000140391.15	ENST00000267970.9:ENST00000346495.6:ENST00000424443.7:ENST00000560715.5:ENST00000561277.5:ENST00000559494.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	104	2	1.84383	3.378	4.91217	0.0522244	0.0388999	0.148503	0.142578
chr14	19303718	19303817	5928399	0	-	0.535354	(0.523,0.58]	chr14	580401	52	EXON_LNCRNA	EXON_LNCRNA:INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	14	532	2	2.78158	3.37717	3.97276	0.0147673	1.38546e-4	0.0829204	0.00347765
chr16	8682061	8682160	6381210	0	+	0.474747	(0.45,0.485]	chr16	631145	70	INTRON	INTRON	ABAT	ENSG00000183044.12	ENST00000564714.5:ENST00000268251.13:ENST00000563992.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	72	2	2.18178	3.37714	4.5725	0.0926859	0.03107	0.188571	0.127822
chr22	46291236	46291329	7743263	0	+	0.645161	(0.58,1]	chr22	811892	10	INTRON	INTRON	TTC38	ENSG00000075234.17	ENST00000381031.8:ENST00000451998.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	114	2	2.70505	3.377045	4.04904	0.0165599	0.0056478	0.0917029	0.0495171
chr16	22443729	22443829	6422239	0	+	0.38	(0.36,0.39]	chr16	635236	56	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000446662.5:ENST00000381231.5:ENST00000309865.11:ENST00000691795.1:ENST00000308347.10:ENST00000687936.1:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	158	2	2.99417	3.37676	3.75935	0.0168929	0.00702912	0.0888269	0.0537794
chr17	43543479	43543579	6909603	0	-	0.58	(0.523,0.58]	chr17	703272	2	SS5_PROX	SS5_PROX:INTRON	ETV4	ENSG00000175832.13	ENST00000538265.5:ENST00000319349.10:ENST00000393664.6:ENST00000545954.5:ENST00000545089.5:ENST00000591713.5:ENST00000590236.5:ENST00000585508.5:ENST00000587151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	243	2	3.24866	3.37666	3.50466	0.0114706	0.00143815	0.0724928	0.0183435
chr16	89294587	89294687	6659751	0	-	0.62	(0.58,1]	chr16	666648	24	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	129	2	3.35086	3.3765650000000003	3.40227	0.0218816	0.00137301	0.101015	0.0177762
chr7	139665787	139665886	3722803	0	-	0.40404	(0.39,0.419]	chr7	357498	337	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	2	98	2	3.13002	3.37631	3.6226	0.0456475	0.0073612	0.142336	0.055174
chr17	3604851	3604950	6837204	0	-	0.585859	(0.58,1]	chr17	691633	27	INTRON	INTRON	TRPV1	ENSG00000196689.13	ENST00000572705.2	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	1.9335	3.37606	4.81862	0.0870471	0.0102696	0.182758	0.0678072
chr3	124851549	124851648	1899832	0	-	0.393939	(0.39,0.419]	chr3	192781	26	INTRON	INTRON	ITGB5	ENSG00000082781.12	ENST00000296181.9:ENST00000465464.5:ENST00000608657.5:ENST00000483168.5:ENST00000608107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	104	2	3.22582	3.3758600000000003	3.5259	0.0249241	0.0176855	0.10758	0.093839
chr19	35005422	35005522	7244914	0	+	0.63	(0.58,1]	chr19	742073	22	INTRON	INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	126	2	3.30273	3.37554	3.44835	0.0107069	0.00791482	0.0700635	0.0596361
chr12	49004643	49004742	5223290	0	+	0.494949	(0.485,0.523]	chr12	506970	56	INTRON	INTRON	DDN-AS1	ENSG00000257913.3	ENST00000552933.2:ENST00000547866.1:ENST00000552284.1:ENST00000547395.1	lncRNA	lncRNA	lncRNA	lncRNA	2	93	2	3.34812	3.375305	3.40249	0.0260491	0.0117752	0.109673	0.0743709
chr19	34388696	34388796	7243237	0	+	0.57	(0.523,0.58]	chr19	741718	67	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	1	46	2	2.6197	3.375155	4.13061	0.0853454	0.0533354	0.181766	0.167062
chr4	139669966	139670066	2134054	0	+	0.51	(0.485,0.523]	chr4	216777	35	INTRON	INTRON	MGST2	ENSG00000085871.9	ENST00000616265.4:ENST00000265498.6:ENST00000506797.5:ENST00000515137.5:ENST00000502587.1:ENST00000503816.1:ENST00000515067.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	46	2	2.62192	3.3745449999999995	4.12717	0.0849566	0.0545434	0.181766	0.167824
chr6	138465252	138465352	3273793	0	-	0.39	(0.36,0.39]	chr6	316903	177	INTRON	INTRON	NHSL1	ENSG00000135540.12	ENST00000427025.6:ENST00000343505.10:ENST00000342260.9:ENST00000426841.6:ENST00000491526.6:ENST00000533765.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	225	2	2.90564	3.374415	3.84319	0.0625454	5.17244e-4	0.160305	0.00896667
chr3	48426514	48426611	1766699	0	-	0.639175	(0.58,1]	chr3	182283	8	INTRON	INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	195	2	3.17314	3.374245	3.57535	0.0060876	0.0017881	0.0515823	0.0213648
chr13	113329880	113329979	5753229	0	-	0.555556	(0.523,0.58]	chr13	564094	34	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	3	125	2	2.87061	3.373965	3.87732	0.0315682	0.00318505	0.120781	0.0316631
chr20	36575048	36575148	7471319	0	+	0.62	(0.58,1]	chr20	777919	2	SS5_PROX	SS5_PROX:INTRON	TGIF2	ENSG00000118707.11	ENST00000373874.6:ENST00000373872.9:ENST00000650844.1:ENST00000611732.4:ENST00000558028.5:ENST00000560025.1	protein_coding	protein_coding	protein_coding	protein_coding	2	80	2	3.35086	3.3738099999999998	3.39676	0.0218816	0.0085026	0.101015	0.0608246
chr15	24986203	24986302	6063707	0	+	0.252525	[0,0.29]	chr15	595387	39	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	3	112	2	2.58036	3.3736699999999997	4.16698	0.0422491	0.0013288	0.13762	0.0173248
chr17	44110528	44110628	6910971	0	-	0.62	(0.58,1]	chr17	703518	4	SS5_PROX	SS5_PROX:INTRON	HDAC5	ENSG00000108840.16	ENST00000225983.10:ENST00000682912.1:ENST00000336057.9:ENST00000586802.5:ENST00000588703.5:ENST00000587135.1:ENST00000591714.5	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.56085	3.3730149999999997	4.18518	0.0803939	0.0374658	0.177452	0.139793
chr5	139650593	139650692	2549666	0	+	0.616162	(0.58,1]	chr5	253164	12	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1	protein_coding	protein_coding	protein_coding	protein_coding	1	40	2	2.56085	3.3730149999999997	4.18518	0.0803939	0.0374658	0.177452	0.139793
chr7	111227106	111227206	3684335	0	-	0.49	(0.485,0.523]	chr7	354615	2632	INTRON	INTRON	IMMP2L	ENSG00000184903.10	ENST00000405709.7:ENST00000331762.7:ENST00000489381.1:ENST00000452895.5:ENST00000450877.5:ENST00000447215.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	2.02572	3.37268	4.71964	0.0718646	0.0532895	0.168159	0.167062
chr3	49404216	49404316	1772997	0	-	0.47	(0.45,0.485]	chr3	183715	283	INTRON	INTRON	RHOA	ENSG00000067560.14	ENST00000678200.1:ENST00000422781.6:ENST00000676712.2:ENST00000678921.2:ENST00000445425.6:ENST00000454011.7:ENST00000418115.6:ENST00000679208.1:ENST00000677684.1:ENST00000431929.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	94	2	3.28219	3.372675	3.46316	0.0334207	0.00952494	0.12421	0.0650078
chr2	215432264	215432364	1368638	0	-	0.5	(0.485,0.523]	chr2	145797	3	SS3_PROX	SS3_PROX:INTRON	FN1	ENSG00000115414.21	ENST00000421182.5:ENST00000323926.10:ENST00000336916.8:ENST00000357867.8:ENST00000359671.5:ENST00000443816.5:ENST00000446046.5:ENST00000354785.11:ENST00000432072.6:ENST00000356005.8:ENST00000426059.1	protein_coding	protein_coding	protein_coding	protein_coding	6	184	2	2.61691	3.3717449999999998	4.12658	0.00866632	0.00731354	0.0612699	0.0568523
chr10	75470612	75470712	4520864	0	+	0.59	(0.58,1]	chr10	432249	190	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	3	104	2	3.30794	3.371595	3.43525	0.0187495	0.00347194	0.0936297	0.0336158
chr6	169707126	169707226	3304952	0	-	0.28	[0,0.29]	chr6	319986	2	UTR3	UTR3:EXON_MRNA:INTRON	PHF10	ENSG00000130024.15	ENST00000339209.9:ENST00000366780.8:ENST00000621772.4:ENST00000480008.1:ENST00000612128.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	53	2	1.92207	3.371515	4.82096	0.0629877	0.0456837	0.182776	0.142336
chr19	2335221	2335320	7189473	0	+	0.636364	(0.58,1]	chr19	731782	1	INTRON	INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000586332.5:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000587851.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	78	2	2.91446	3.3705	3.82654	0.0464528	0.00275362	0.143232	0.0285628
chr11	61299743	61299841	5041551	0	-	0.418367	(0.39,0.419]	chr11	488831	4	UTR3	UTR3:EXON_MRNA	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000681815.1:ENST00000681580.1:ENST00000680345.1:ENST00000451943.6:ENST00000545894.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	14	626	2	3.29751	3.37046	3.44341	0.00725473	0.00100927	0.0566376	0.0142887
chr15	67101423	67101523	6139432	0	+	0.56	(0.523,0.58]	chr15	603944	20	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1:ENST00000559092.1:ENST00000560175.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	91	2	3.30043	3.37028	3.44013	0.0308549	0.00938609	0.119556	0.064735
chr8	700394	700494	3932733	0	-	0.74	(0.58,1]	chr8	376054	74	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000262109.8:ENST00000524138.5:ENST00000518277.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	78	2	3.13234	3.3702050000000003	3.60807	0.0322188	0.00495688	0.121593	0.0425347
chr1	2294291	2294391	5155	0	+	0.46	(0.45,0.485]	chr1	1052	459	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.24119	3.3695250000000003	4.49786	0.101311	0.0525018	0.196131	0.167062
chr17	15454782	15454882	6859982	0	-	0.48	(0.45,0.485]	chr17	695067	13	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	47	2	2.24119	3.3695250000000003	4.49786	0.101311	0.0525018	0.196131	0.167062
chr22	28407400	28407499	7779104	0	-	0.464646	(0.45,0.485]	chr22	815737	1004	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7:ENST00000490475.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	47	2	2.24119	3.3695250000000003	4.49786	0.101311	0.0525018	0.196131	0.167062
chr12	120983665	120983764	5340967	0	+	0.494949	(0.485,0.523]	chr12	521546	42	INTRON	INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000400024.6:ENST00000560968.5:ENST00000402929.5:ENST00000535955.5:ENST00000538626.2:ENST00000538646.5:ENST00000541924.5:ENST00000544574.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	90	2	3.1954	3.3687899999999997	3.54218	0.0364043	0.00747698	0.128173	0.0555092
chr9	129610870	129610969	4250939	0	+	0.575758	(0.523,0.58]	chr9	404743	13	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	2	90	2	3.22074	3.368685	3.51663	0.0350559	0.00782908	0.12704	0.0574276
chr3	146085549	146085634	1936230	0	-	0.317647	(0.29,0.33]	chr3	196974	3	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	PLOD2	ENSG00000152952.12	ENST00000282903.10:ENST00000461497.5:ENST00000360060.7:ENST00000494950.5:ENST00000478436.1:ENST00000460520.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	45	2	2.61502	3.3685150000000004	4.12201	0.083721	0.0564091	0.181508	0.171933
chr16	78441551	78441651	6498827	0	+	0.54	(0.523,0.58]	chr16	645683	84	INTRON	INTRON	WWOX	ENSG00000186153.18	ENST00000683929.1:ENST00000684632.1:ENST00000627394.3:ENST00000569332.5:ENST00000402655.6:ENST00000406884.6:ENST00000539474.6:ENST00000566780.6:ENST00000408984.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	92	2	2.6197	3.36851	4.11732	0.0853454	0.00168626	0.181766	0.0204375
chr16	89307537	89307636	6659887	0	-	0.686869	(0.58,1]	chr16	666665	18	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1:ENST00000647539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	106	2	3.13234	3.36813	3.60392	0.0322188	0.00148337	0.121593	0.0186585
chr17	57842856	57842955	6931675	0	-	0.393939	(0.39,0.419]	chr17	706379	12	INTRON	INTRON	MRPS23	ENSG00000181610.13	ENST00000313608.13:ENST00000578444.1:ENST00000579380.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.10544	3.3679050000000004	4.63037	0.0963077	0.0704092	0.195995	0.189169
chr8	124685576	124685675	4064514	0	-	0.525253	(0.523,0.58]	chr8	387132	122	INTRON	INTRON	MTSS1	ENSG00000170873.19	ENST00000518547.6:ENST00000378017.7:ENST00000325064.9:ENST00000522162.1	protein_coding	protein_coding	protein_coding	protein_coding	2	92	2	3.35934	3.3676399999999997	3.37594	0.0272868	0.0113252	0.112327	0.071894
chr16	20692374	20692474	6416382	0	+	0.39	(0.36,0.39]	chr16	634386	103	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	59	2	1.97044	3.3671699999999998	4.7639	0.0811309	0.0637116	0.184651	0.177951
chr17	55277782	55277882	6757236	0	+	0.4	(0.39,0.419]	chr17	681704	93	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	384	2	2.59508	3.366885	4.13869	0.00651248	0.00414931	0.0505989	0.0416839
chr2	74176027	74176126	1191457	0	-	0.494949	(0.485,0.523]	chr2	129198	29	INTRON	INTRON	MOB1A	ENSG00000114978.18	ENST00000396049.5:ENST00000497054.5:ENST00000495286.5:ENST00000463975.1:ENST00000488006.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	96	2	3.17158	3.3668500000000003	3.56212	0.0199384	0.017456	0.0967486	0.0928044
chrX	133934952	133935052	8115517	0	-	0.33	(0.29,0.33]	chrX	845529	1000	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	55	2	1.88028	3.366565	4.85285	0.0709831	0.0567079	0.19755	0.154343
chr17	38729195	38729295	6729375	0	+	0.52	(0.485,0.523]	chr17	676371	37	UTR3	UTR3:EXON_MRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5	protein_coding	protein_coding	protein_coding	protein_coding	10	245	2	2.48002	3.3661700000000003	4.25232	0.00761011	0.00578654	0.0561937	0.0501412
chr16	85234565	85234665	6515414	0	+	0.6	(0.58,1]	chr16	646377	68	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	90	2	2.91493	3.366015	3.8171	0.0259506	0.0090206	0.116361	0.0637469
chr14	70023947	70024046	5872622	0	+	0.515152	(0.485,0.523]	chr14	573363	1	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	2	91	2	3.30265	3.365775	3.4289	0.0306642	0.00977282	0.119264	0.0664239
chr2	138568336	138568435	904563	0	+	0.484848	(0.45,0.485]	chr2	101982	30	INTRON	INTRON	SPOPL	ENSG00000144228.9	ENST00000280098.9:ENST00000420679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	126	2	3.12123	3.3650700000000002	3.60891	0.0428769	0.00223405	0.137868	0.024843
chr15	67079538	67079637	6139212	0	+	0.50505	(0.485,0.523]	chr15	603938	11	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	124	2	2.83493	3.364865	3.8948	0.0333987	0.00310434	0.124189	0.0311614
chr17	82008137	82008237	6815378	0	+	0.68	(0.58,1]	chr17	688641	39	EXON_MRNA	EXON_MRNA:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5:ENST00000578236.5:ENST00000581608.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	319	2	2.8602	3.363995	3.86779	0.00326952	0.00157168	0.0366631	0.0195133
chr6	144348099	144348199	3020491	0	+	0.53	(0.523,0.58]	chr6	295148	34	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1:ENST00000628146.2:ENST00000421035.2	protein_coding	protein_coding	protein_coding	protein_coding	2	90	2	3.2478	3.36334	3.47888	0.0335771	0.00856566	0.124319	0.0612
chr2	69639877	69639977	1177196	0	-	0.48	(0.45,0.485]	chr2	128070	825	INTRON	INTRON	AAK1	ENSG00000115977.21	ENST00000409085.9:ENST00000606389.7:ENST00000409068.5:ENST00000406297.7:ENST00000495836.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	92	2	3.12123	3.363085	3.60494	0.0428769	0.00682726	0.137868	0.0525149
chr1	43984464	43984564	111007	0	+	0.58	(0.523,0.58]	chr1	13828	2	SS3_PROX	SS3_PROX:INTRON	B4GALT2	ENSG00000117411.18	ENST00000434555.7:ENST00000372324.6:ENST00000481924.2:ENST00000497866.6:ENST00000485678.6:ENST00000356836.10:ENST00000309519.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.14543	3.3630050000000002	4.58058	0.0860403	0.0609283	0.181766	0.179956
chr2	69932352	69932452	826864	0	+	0.57	(0.523,0.58]	chr2	93204	102	INTRON	INTRON	MXD1	ENSG00000059728.11	ENST00000435990.5:ENST00000540449.5:ENST00000264444.7:ENST00000409442.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.14543	3.3630050000000002	4.58058	0.0860403	0.0609283	0.181766	0.179956
chr20	23634499	23634583	7537527	0	-	0.559524	(0.523,0.58]	chr20	786640	1	INTRON	INTRON	CST3	ENSG00000101439.9	ENST00000398411.5:ENST00000398409.1:ENST00000376925.8	protein_coding	protein_coding	protein_coding	protein_coding	3	124	2	2.98385	3.362025	3.7402	0.0505794	0.00139933	0.148456	0.0179906
chr3	48424864	48424948	1766681	0	-	0.654762	(0.58,1]	chr3	182277	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	129	2	2.53953	3.361695	4.18386	0.0311563	9.90719e-4	0.120073	0.0141138
chr8	133288531	133288631	4084210	0	-	0.59	(0.58,1]	chr8	388355	1	SS3_PROX	SS3_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1:ENST00000674839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	261	2	2.91493	3.361665	3.8084	0.0259506	0.00174324	0.116361	0.0258752
chr22	21856425	21856525	7770064	0	-	0.52	(0.485,0.523]	chr22	814807	482	INTRON	INTRON	MAPK1	ENSG00000100030.15	ENST00000215832.11:ENST00000398822.7:ENST00000544786.1	protein_coding	protein_coding	protein_coding	protein_coding	2	89	2	2.88614	3.3614550000000003	3.83677	0.0583792	0.00360381	0.155373	0.0342681
chr14	103102872	103102972	5921840	0	+	0.68	(0.58,1]	chr14	579205	1	SS5_PROX	SS5_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000559116.1:ENST00000560925.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	124	2	3.08346	3.361115	3.63877	0.0127766	0.00349148	0.0769397	0.0337874
chr7	130910113	130910213	3711077	0	-	0.4	(0.39,0.419]	chr7	356708	254	INTRON	INTRON	ENSG00000226380	ENSG00000226380.9	ENST00000432045.6:ENST00000447307.5:ENST00000418546.1	lncRNA	lncRNA	lncRNA	lncRNA	6	88	2	1.7813	3.36095	4.9406	0.0658437	0.0567602	0.172959	0.162385
chr20	20465233	20465333	7533850	0	-	0.57	(0.523,0.58]	chr20	786266	527	INTRON	INTRON	RALGAPA2	ENSG00000188559.16	ENST00000202677.12:ENST00000430436.5	protein_coding	protein_coding	protein_coding	protein_coding	2	95	2	3.18279	3.3604649999999996	3.53814	0.020829	0.0168396	0.0990379	0.0919482
chr2	149594834	149594934	919894	0	+	0.46	(0.45,0.485]	chr2	102788	4	INTRON	INTRON	MMADHC-DT	ENSG00000231969.3	ENST00000687950.1:ENST00000449714.2:ENST00000689856.1:ENST00000655697.1	lncRNA	lncRNA	lncRNA	lncRNA	5	74	2	1.76628	3.36004	4.9538	0.0618961	0.0569772	0.180615	0.154343
chr6	158565726	158565826	3063952	0	+	0.6	(0.58,1]	chr6	297687	51	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	8	190	2	2.12641	3.35967	4.59293	0.0181333	0.00177443	0.0955836	0.0262073
chr7	130901242	130901342	3710988	0	-	0.5	(0.485,0.523]	chr7	356708	165	INTRON	INTRON	ENSG00000226380	ENSG00000226380.9	ENST00000432045.6:ENST00000447307.5:ENST00000418546.1	lncRNA	lncRNA	lncRNA	lncRNA	5	72	2	1.75525	3.35882	4.96239	0.0616116	0.0518747	0.18013	0.148503
chr10	47534180	47534280	4680524	0	-	0.57	(0.523,0.58]	chr10	446443	103	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	3	119	2	3.1794	3.35877	3.53814	0.020829	0.00624033	0.0990379	0.0497314
chr20	45078636	45078735	7486290	0	+	0.424242	(0.419,0.45]	chr20	780020	36	UTR3	UTR3:EXON_MRNA	STK4	ENSG00000101109.12	ENST00000499879.6:ENST00000372806.8	protein_coding	protein_coding	protein_coding	protein_coding	5	221	2	3.10401	3.3587550000000004	3.6135	0.0266174	0.00153941	0.111487	0.0191907
chr7	47476406	47476506	3588572	0	-	0.54	(0.523,0.58]	chr7	346123	233	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	5	164	2	2.69882	3.358595	4.01837	0.00895679	0.00870551	0.0637469	0.0612699
chr19	54459493	54459590	7292464	0	+	0.670103	(0.58,1]	chr19	750774	7	UTR3	UTR3:EXON_MRNA:INTRON	LENG8	ENSG00000167615.17	ENST00000616932.4:ENST00000326764.10:ENST00000376514.6:ENST00000610347.1:ENST00000421200.1	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.09276	3.3583950000000002	4.62403	0.0619333	0.0578275	0.180615	0.154343
chr9	121300126	121300226	4230533	0	+	0.63	(0.58,1]	chr9	401617	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GSN	ENSG00000148180.21	ENST00000373823.7:ENST00000373808.8:ENST00000432226.7:ENST00000477863.5:ENST00000449733.7:ENST00000483960.5:ENST00000394353.7:ENST00000477104.2:ENST00000545652.6:ENST00000373818.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	41	2	2.09276	3.3583950000000002	4.62403	0.0619333	0.0578275	0.180615	0.154343
chr1	43558626	43558725	107025	0	+	0.626263	(0.58,1]	chr1	13192	43	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	105	2	2.55909	3.3581649999999996	4.15724	0.0425829	0.00107173	0.13762	0.0148869
chr3	65917167	65917267	1814650	0	-	0.36	(0.33,0.36]	chr3	187310	96	INTRON	INTRON	MAGI1:MAGI1-IT1	ENSG00000151276.24:ENSG00000272610.1	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5:ENST00000460754.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	2	47	2	2.1459	3.3581250000000002	4.57035	0.0945416	0.0641796	0.188571	0.184676
chr11	70787849	70787949	5062160	0	-	0.56	(0.523,0.58]	chr11	492701	700	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	89	2	3.19317	3.3548999999999998	3.51663	0.0366207	0.00782908	0.128697	0.0574276
chr11	87276452	87276552	4912774	0	+	0.21	[0,0.29]	chr11	474136	394	INTRON	INTRON	TMEM135	ENSG00000166575.17	ENST00000340353.11:ENST00000305494.6:ENST00000532959.5:ENST00000525018.5	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.00598	3.3548050000000003	4.70363	0.104328	0.0169854	0.19835	0.0923809
chr16	72624639	72624738	6624817	0	-	0.454545	(0.45,0.485]	chr16	663482	67	INTRON	INTRON	LINC01572	ENSG00000261008.8	ENST00000624829.4:ENST00000561611.2:ENST00000656218.1:ENST00000666555.2:ENST00000664155.1:ENST00000657725.1:ENST00000563770.5:ENST00000668081.1:ENST00000570152.2:ENST00000662171.1:ENST00000691892.1:ENST00000659470.1:ENST00000655530.1:ENST00000570035.5:ENST00000563823.6	lncRNA	lncRNA	lncRNA	lncRNA	2	99	2	3.12941	3.35439	3.57937	0.0206537	0.0199365	0.100864	0.0984724
chr22	15816735	15816830	7682890	0	+	0.589474	(0.58,1]	chr22	803564	8	INTRON	INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000383038.7:ENST00000447898.5	lncRNA	lncRNA	lncRNA	lncRNA	5	141	2	2.82974	3.3542050000000003	3.87867	0.00797934	0.00484486	0.0596361	0.0418342
chr4	23775578	23775677	2208442	0	-	0.50505	(0.485,0.523]	chr4	223243	100	INTRON	INTRON	PPARGC1A	ENSG00000109819.9	ENST00000509702.5	protein_coding	processed_transcript	protein_coding	processed_transcript	1	45	2	2.57989	3.3535299999999997	4.12717	0.0899526	0.0545434	0.185791	0.167824
chr15	98960037	98960137	6196478	0	+	0.33	(0.29,0.33]	chr15	609806	27	UTR3	UTR3:EXON_MRNA	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1	protein_coding	protein_coding	protein_coding	protein_coding	5	166	2	2.50112	3.35304	4.20496	0.0146612	0.005888	0.0840429	0.0506158
chr19	34392864	34392960	7243279	0	+	0.6875	(0.58,1]	chr19	741719	8	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000589985.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	119	2	3.30908	3.35292	3.39676	0.0104949	0.0085026	0.0690941	0.0608246
chr20	4857404	4857504	7517115	0	-	0.47	(0.45,0.485]	chr20	784813	2	SS3_PROX	SS3_PROX:INTRON	SLC23A2	ENSG00000089057.15	ENST00000379333.5:ENST00000338244.6	protein_coding	protein_coding	protein_coding	protein_coding	2	91	2	3.00299	3.352905	3.70282	0.0512051	0.00539085	0.148503	0.0450882
chr20	34566450	34566549	7547092	0	-	0.525253	(0.523,0.58]	chr20	787854	51	INTRON	INTRON	PIGU	ENSG00000101464.11	ENST00000217446.8:ENST00000374820.6:ENST00000438215.1	protein_coding	protein_coding	protein_coding	protein_coding	3	118	2	3.32948	3.35271	3.37594	0.0272868	0.0042482	0.112327	0.0383564
chr7	103952557	103952657	3663324	0	-	0.34	(0.33,0.36]	chr7	353511	350	INTRON	INTRON	RELN	ENSG00000189056.15	ENST00000343529.9:ENST00000428762.6:ENST00000681034.1:ENST00000424685.3:ENST00000679867.1:ENST00000473457.2:ENST00000680712.1:ENST00000681931.1:ENST00000681401.1:ENST00000679689.1:ENST00000681182.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	57	2	1.93142	3.352485	4.77355	0.0735809	0.0670344	0.191945	0.17026
chr9	129497273	129497373	4250748	0	+	0.72	(0.58,1]	chr9	404721	2	SS5_PROX	SS5_PROX:INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	41	2	2.15496	3.352115	4.54927	0.0643046	0.0548868	0.168717	0.161669
chr2	26092463	26092563	731404	0	+	0.35	(0.33,0.36]	chr2	85215	498	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	94	2	2.75754	3.3514850000000003	3.94543	0.0735337	0.0031765	0.17026	0.0316024
chr5	40829220	40829319	2648700	0	-	0.373737	(0.36,0.39]	chr5	262891	41	UTR3	UTR3:EXON_MRNA:INTRON	RPL37	ENSG00000145592.14	ENST00000274242.10:ENST00000511787.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	130	2	3.21593	3.351025	3.48612	0.0398531	0.00356064	0.133954	0.0342681
chr1	1064494	1064589	1386	0	+	0.631579	(0.58,1]	chr1	323	1	EXON_LNCRNA	EXON_LNCRNA:EXON_PSEUDO:SS5_ADJ:SS5_PROX:INTRON	ENSG00000217801	ENSG00000217801.11	ENST00000688131.1:ENST00000456409.6:ENST00000692821.1:ENST00000394517.7:ENST00000427998.6:ENST00000685011.1:ENST00000692266.1:ENST00000412397.2:ENST00000433695.1:ENST00000451054.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	77	2	2.87471	3.350625	3.82654	0.0495478	0.00275362	0.146562	0.0285628
chrX	133897958	133898058	8115147	0	-	0.46	(0.45,0.485]	chrX	845529	630	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	59	2	2.20266	3.35026	4.49786	0.101311	0.0384371	0.196131	0.141711
chr16	85387137	85387237	6516942	0	+	0.66	(0.58,1]	chr16	646391	278	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	93	2	2.78186	3.350085	3.91831	0.0342923	0.00736882	0.13449	0.0571679
chr16	22426112	22426212	6566825	0	-	0.62	(0.58,1]	chr16	655123	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CDR2:RRN3P3	ENSG00000140743.8:ENSG00000257122.5	ENST00000564542.5:ENST00000563573.5:ENST00000569045.1:ENST00000551766.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	6	76	2	1.93489	3.348865	4.76284	0.0471737	0.0325288	0.143232	0.130831
chr20	8388762	8388862	7429155	0	+	0.31	(0.29,0.33]	chr20	773698	167	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	146	2	2.49064	3.3487649999999998	4.20689	0.0412177	0.00140294	0.136301	0.0180301
chr1	204084173	204084273	322161	0	+	0.61	(0.58,1]	chr1	36272	56	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1:ENST00000528591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.40217	3.3483549999999997	4.29454	0.100879	0.0305531	0.196131	0.126768
chr2	235045726	235045825	1062432	0	+	0.616162	(0.58,1]	chr2	115634	21	INTRON	INTRON	SH3BP4	ENSG00000130147.16	ENST00000392011.7:ENST00000409212.5:ENST00000344528.8	protein_coding	protein_coding	protein_coding	protein_coding	1	38	2	2.40217	3.3483549999999997	4.29454	0.100879	0.0305531	0.196131	0.126768
chr9	134329853	134329953	4260721	0	+	0.63	(0.58,1]	chr9	406311	28	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.40217	3.3483549999999997	4.29454	0.100879	0.0305531	0.196131	0.126768
chr11	70583029	70583129	5060103	0	-	0.65	(0.58,1]	chr11	492663	797	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	39	2	2.50987	3.347525	4.18518	0.0865901	0.0374658	0.182221	0.139793
chr14	104874055	104874155	5925952	0	+	0.66	(0.58,1]	chr14	579942	51	INTRON	INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	2.45703	3.34635	4.23567	0.0933945	8.49275e-4	0.188571	0.0126615
chr6	160069440	160069514	3066311	0	+	0.486486	(0.485,0.523]	chr6	298079	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	45	2	2.1863	3.34632	4.50634	0.0939553	0.0567965	0.188571	0.172995
chr2	54571780	54571880	799432	0	+	0.36	(0.33,0.36]	chr2	90800	125	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7:ENST00000333896.5	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.19524	3.3454800000000002	4.49572	0.103264	0.0586798	0.197541	0.176098
chr3	172114188	172114288	1628211	0	+	0.48	(0.45,0.485]	chr3	170543	12	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	65	2	1.85134	3.3444450000000003	4.83755	0.06646	0.061124	0.18013	0.162385
chr8	128034554	128034653	3920225	0	+	0.474747	(0.45,0.485]	chr8	374311	19	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1	lncRNA	lncRNA	lncRNA	lncRNA	4	65	2	1.85134	3.3444450000000003	4.83755	0.06646	0.061124	0.18013	0.162385
chr1	12592501	12592601	402528	0	-	0.64	(0.58,1]	chr1	46222	115	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	80	2	3.25332	3.344285	3.43525	0.0187495	0.0120565	0.0936297	0.0754623
chr13	113048829	113048929	5656123	0	+	0.65	(0.58,1]	chr13	555180	16	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	80	2	3.25332	3.344285	3.43525	0.0187495	0.0120565	0.0936297	0.0754623
chr16	89297473	89297573	6659780	0	-	0.5	(0.485,0.523]	chr16	666648	53	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	88	2	2.85123	3.3440000000000003	3.83677	0.0614408	0.00360381	0.158506	0.0342681
chr16	46902082	46902181	6442604	0	+	0.535354	(0.523,0.58]	chr16	639007	9	INTRON	INTRON	GPT2	ENSG00000166123.14	ENST00000340124.9:ENST00000562132.5:ENST00000440783.2	protein_coding	protein_coding	protein_coding	protein_coding	7	245	2	3.08286	3.343985	3.60511	0.00864084	0.00244637	0.0623824	0.026415
chr11	96167406	96167506	5111810	0	-	0.48	(0.45,0.485]	chr11	496566	735	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	2.46319	3.343355	4.22352	0.0626294	0.0496712	0.160725	0.160398
chr16	22424612	22424712	6566810	0	-	0.59	(0.58,1]	chr16	655121	20	INTRON	INTRON	CDR2:RRN3P3	ENSG00000140743.8:ENSG00000257122.5	ENST00000564542.5:ENST00000563573.5:ENST00000569045.1:ENST00000551766.5	protein_coding	protein_coding	protein_coding:transcribed_unprocessed_pseudogene	protein_coding:processed_transcript	3	109	2	2.87471	3.34299	3.81127	0.0495478	7.94461e-4	0.146562	0.0120803
chr10	79242168	79242268	4533783	0	+	0.63	(0.58,1]	chr10	432457	255	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.2895	3.3428500000000003	4.3962	0.0665599	0.0250928	0.162495	0.114418
chr11	68372374	68372474	4882684	0	+	0.73	(0.58,1]	chr11	470566	63	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	2.2895	3.3428500000000003	4.3962	0.0665599	0.0250928	0.162495	0.114418
chr22	32818797	32818897	7717797	0	+	0.58	(0.523,0.58]	chr22	807776	163	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	2	103	2	2.86937	3.34285	3.8163299999999998	0.0324455	0.012872	0.130548	0.0772995
chr6	157311984	157312084	3298411	0	-	0.58	(0.523,0.58]	chr6	319197	186	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	4	141	2	2.98209	3.3428449999999996	3.7036	0.0156851	0.00592874	0.0852152	0.047919
chr6	2162531	2162631	3084507	0	-	0.27	[0,0.29]	chr6	299521	374	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5	protein_coding	protein_coding	protein_coding	protein_coding	3	111	2	3.1021	3.342365	3.58263	0.0350033	0.00196912	0.12704	0.0227838
chr16	50623298	50623397	6452162	0	+	0.565657	(0.523,0.58]	chr16	639918	12	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	8	306	2	3.03865	3.34016	3.64167	0.0135522	6.42946e-4	0.0793558	0.0104271
chr6	159680304	159680403	3300261	0	-	0.333333	(0.33,0.36]	chr6	319489	114	UTR3	UTR3:EXON_MRNA:INTRON	SOD2	ENSG00000112096.19	ENST00000538183.7:ENST00000546260.5:ENST00000367055.8:ENST00000367054.6:ENST00000546087.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	413	2	2.5398	3.33932	4.13884	0.00605231	0.00356793	0.0486206	0.0383188
chr1	1270815	1270912	380699	0	-	0.670103	(0.58,1]	chr1	42922	25	INTRON	INTRON	UBE2J2	ENSG00000160087.21	ENST00000450390.6:ENST00000349431.11:ENST00000347370.6:ENST00000400929.6:ENST00000464036.5:ENST00000360466.6:ENST00000400930.8:ENST00000473215.5:ENST00000435198.5:ENST00000509720.5:ENST00000491779.5:ENST00000466752.5:ENST00000503294.5:ENST00000477894.5:ENST00000422076.5:ENST00000502382.1:ENST00000461142.3:ENST00000488418.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	55	2	2.18715	3.339155	4.49116	0.0781652	0.0207449	0.175203	0.102713
chr16	29264116	29264216	6433478	0	+	0.63	(0.58,1]	chr16	636745	120	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	2	55	2	2.18715	3.339155	4.49116	0.0781652	0.0207449	0.175203	0.102713
chr1	31906808	31906906	437226	0	-	0.357143	(0.33,0.36]	chr1	52047	5	UTR3	UTR3:EXON_MRNA	PTP4A2	ENSG00000184007.22	ENST00000647444.2:ENST00000602725.5	protein_coding	protein_coding	protein_coding	protein_coding	2	94	2	3.29545	3.33914	3.38283	0.0331843	0.0120576	0.123484	0.0754623
chr13	75481169	75481269	5727996	0	-	0.74	(0.58,1]	chr13	561724	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	7	230	2	3.28179	3.33901	3.39623	0.00724916	9.03898e-4	0.0565991	0.0132686
chr16	89300962	89301062	6659817	0	-	0.64	(0.58,1]	chr16	666652	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	248	2	2.17337	3.33896	4.50455	0.0105794	0.00215269	0.0694237	0.02913
chr9	133916362	133916462	4429564	0	-	0.61	(0.58,1]	chr9	423310	546	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	104	2	2.41557	3.3382300000000003	4.26089	0.0542363	7.87512e-4	0.15176	0.0120243
chr19	945311	945411	7185299	0	+	0.61	(0.58,1]	chr19	730741	122	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	171	2	3.00688	3.338095	3.66931	0.0127171	0.00122119	0.0767366	0.0163226
chr17	57477481	57477580	6761987	0	+	0.565657	(0.523,0.58]	chr17	682137	324	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	89	2	2.66054	3.338045	4.01555	0.0806884	0.00221587	0.177452	0.0247044
chr6	1870628	1870728	3081579	0	-	0.28	[0,0.29]	chr6	299482	1277	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	54	2	2.13325	3.338	4.54275	0.0681032	0.0412365	0.164448	0.148098
chr11	65439848	65439948	4871740	0	+	0.45	(0.419,0.45]	chr11	468177	172	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	18	785	2	3.18826	3.33772	3.48718	0.00572238	0.00144574	0.0498475	0.0184139
chr8	133288831	133288931	4084213	0	-	0.52	(0.485,0.523]	chr8	388355	4	SS3_PROX	SS3_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1:ENST00000674839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	182	2	2.7365	3.337645	3.93879	0.0423471	0.00456827	0.149195	0.0438897
chr2	21000350	21000444	1100424	0	-	0.531915	(0.523,0.58]	chr2	119926	12	EXON_LNCRNA	EXON_LNCRNA	ENSG00000261012	ENSG00000261012.2	ENST00000567376.2	lncRNA	lncRNA	lncRNA	lncRNA	4	62	2	1.76996	3.3374800000000002	4.905	0.0693079	0.0563605	0.194071	0.154188
chr9	129498146	129498242	4250757	0	+	0.645833	(0.58,1]	chr9	404722	7	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	5	167	2	3.27136	3.33738	3.4034	0.00867516	0.00202817	0.0624342	0.0232814
chr22	36367797	36367896	7807202	0	-	0.616162	(0.58,1]	chr22	818157	28	INTRON	INTRON	MYH9	ENSG00000100345.23	ENST00000216181.11:ENST00000685801.1:ENST00000692930.1:ENST00000685187.1:ENST00000691687.1:ENST00000685191.1:ENST00000688137.1:ENST00000691296.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	76	2	3.02751	3.337185	3.64686	0.0385189	0.00447535	0.131324	0.0398484
chr10	28560831	28560931	4469693	0	+	0.47	(0.45,0.485]	chr10	427649	224	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	173	2	2.428	3.336885	4.24577	0.0179128	0.0064383900000000004	0.0948866	0.0530091
chr16	57374513	57374612	6466009	0	+	0.414141	(0.39,0.419]	chr16	641365	15	INTRON	INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1	protein_coding	protein_coding	protein_coding	protein_coding	2	95	2	2.98941	3.3368700000000002	3.68433	0.0559471	0.00637588	0.154188	0.0501889
chr2	74155778	74155877	1191250	0	-	0.30303	(0.29,0.33]	chr2	129170	34	UTR3	UTR3:EXON_MRNA	MOB1A	ENSG00000114978.18	ENST00000396049.5	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.08537	3.33653	4.58769	0.0806047	0.0478733	0.177452	0.158962
chr4	3363895	3363994	2005075	0	+	0.707071	(0.58,1]	chr4	204663	205	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	76	2	2.91446	3.335895	3.75733	0.0464528	0.0033279	0.143232	0.0325742
chr1	42850321	42850400	105842	0	+	0.544304	(0.523,0.58]	chr1	12816	2	SS3_PROX	SS3_PROX:INTRON	ZNF691	ENSG00000164011.18	ENST00000372502.5:ENST00000372508.7:ENST00000651192.1:ENST00000372507.5:ENST00000372506.5:ENST00000372504.5:ENST00000397034.3:ENST00000372503.2	protein_coding	protein_coding	protein_coding	protein_coding	2	87	2	3.04682	3.3355449999999998	3.62427	0.0459721	0.0060311	0.142664	0.0484641
chr12	2960167	2960260	5157685	0	+	0.677419	(0.58,1]	chr12	501255	5	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TEAD4	ENSG00000197905.10	ENST00000358409.7:ENST00000359864.8:ENST00000540314.2:ENST00000536826.2:ENST00000543035.6:ENST00000397122.6:ENST00000443986.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	138	2	3.02247	3.3351550000000003	3.64784	0.0183788	0.00130204	0.0925773	0.0171306
chr7	92614543	92614642	3636736	0	-	0.333333	(0.33,0.36]	chr7	350278	98	UTR3	UTR3:EXON_MRNA	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	3	125	2	3.165	3.335115	3.50523	0.0406097	0.00317804	0.135868	0.031614
chr17	77350299	77350399	6803862	0	+	0.57	(0.523,0.58]	chr17	686742	261	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	160	2	3.08	3.33482	3.58964	0.0221588	0.00212218	0.101805	0.0239927
chr11	121479042	121479142	4953923	0	+	0.52	(0.485,0.523]	chr11	478664	4	INTRON	INTRON	SORL1	ENSG00000137642.13	ENST00000260197.12:ENST00000532451.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	93	2	3.17158	3.3337149999999998	3.49585	0.0222996	0.017456	0.102226	0.0928044
chr2	3298195	3298295	1081089	0	-	0.44	(0.419,0.45]	chr2	117633	155	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	98	2	2.7886	3.33366	3.87872	0.0766427	0.00421639	0.174882	0.0380856
chr20	3805251	3805347	7421606	0	+	0.552083	(0.523,0.58]	chr20	773159	4	UTR3	UTR3:EXON_MRNA	CDC25B	ENSG00000101224.18	ENST00000344256.10:ENST00000379598.9:ENST00000439880.6:ENST00000245960.10	protein_coding	protein_coding	protein_coding	protein_coding	3	120	2	2.73279	3.3335	3.93421	0.039547	0.00274644	0.133109	0.028553
chr2	3459584	3459673	711029	0	+	0.617977	(0.58,1]	chr2	83176	8	INTRON	INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000479955.5:ENST00000497597.5:ENST00000473348.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	232	2	2.98806	3.333065	3.67807	0.0102909	5.86367e-4	0.0684871	0.00978031
chr11	70765866	70765966	5061940	0	-	0.51	(0.485,0.523]	chr11	492701	480	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	89	2	3.27658	3.33283	3.38908	0.0319818	0.0107186	0.121593	0.0700744
chr4	1325178	1325276	1995290	0	+	0.520408	(0.485,0.523]	chr4	203264	12	INTRON	INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	120	2	2.33266	3.3327850000000003	4.33291	0.0731249	9.5504e-4	0.170083	0.0137043
chr12	48936894	48936992	5423605	0	-	0.377551	(0.36,0.39]	chr12	531642	13	UTR3	UTR3:EXON_MRNA	ARF3	ENSG00000134287.10	ENST00000256682.9	protein_coding	protein_coding	protein_coding	protein_coding	2	95	2	2.80799	3.332515	3.85704	0.0716011	0.00420937	0.168159	0.0380601
chr7	74712491	74712590	3393514	0	+	0.414141	(0.39,0.419]	chr7	327559	10	INTRON	INTRON	GTF2I	ENSG00000263001.8	ENST00000650807.1:ENST00000690345.1:ENST00000573035.6:ENST00000614986.4:ENST00000620879.4:ENST00000621734.4:ENST00000443166.5:ENST00000490431.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	96	2	2.73134	3.3324	3.93346	0.0798958	0.00350435	0.177037	0.0339021
chr2	158485596	158485696	935236	0	+	0.29	[0,0.29]	chr2	103367	269	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	80	2	3.13542	3.331925	3.52843	0.0330802	0.00712139	0.123282	0.0541241
chr21	44872353	44872453	7678566	0	-	0.48	(0.45,0.485]	chr21	802774	1	SS5_PROX	SS5_PROX:INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	540	2	3.17236	3.331625	3.49089	0.00421205	0.00394416	0.0421633	0.0367799
chr17	72561016	72561116	6963921	0	-	0.57	(0.523,0.58]	chr17	710389	266	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	2	89	2	2.6197	3.330685	4.04167	0.0853454	0.00206682	0.181766	0.0235758
chr6	63541913	63542013	2933828	0	+	0.28	[0,0.29]	chr6	288732	90	INTRON	INTRON	PTP4A1	ENSG00000112245.13	ENST00000648894.1:ENST00000639568.2:ENST00000470661.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	115	2	2.88423	3.33012	3.77601	0.0500742	0.00113741	0.147892	0.0155595
chr11	64305736	64305836	4868810	0	+	0.87	(0.58,1]	chr11	467346	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ESRRA	ENSG00000173153.17	ENST00000406310.6:ENST00000000442.11:ENST00000677967.1:ENST00000539594.5	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	3.13234	3.32978	3.52722	0.0322188	0.00611467	0.121593	0.0489549
chr11	2674303	2674403	4972054	0	-	0.54	(0.523,0.58]	chr11	481197	661	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	3	55	2	2.07805	3.3293150000000002	4.58058	0.0860403	0.0476935	0.181766	0.158666
chr1	211795688	211795788	655041	0	-	0.43	(0.419,0.45]	chr1	77269	21	INTRON	INTRON	LPGAT1	ENSG00000123684.13	ENST00000366997.9:ENST00000366996.1	protein_coding	protein_coding	protein_coding	protein_coding	2	97	2	2.91455	3.32886	3.74317	0.06467	0.00581478	0.162218	0.047264
chr1	204537708	204537782	322842	0	+	0.391892	(0.39,0.419]	chr1	36380	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MDM4	ENSG00000198625.14	ENST00000367183.7:ENST00000391947.6:ENST00000454264.6:ENST00000612738.4:ENST00000614459.4:ENST00000616250.4:ENST00000367182.8:ENST00000463049.5:ENST00000470908.5:ENST00000471783.1:ENST00000507825.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	95	2	3.13002	3.32738	3.52474	0.0456475	0.00920811	0.142336	0.0637008
chr17	82005541	82005641	6815352	0	+	0.7	(0.58,1]	chr17	688641	13	EXON_MRNA	EXON_MRNA:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	311	2	3.06092	3.3270299999999997	3.59314	0.0114084	2.27699e-4	0.0723462	0.00496195
chr7	47472810	47472910	3588536	0	-	0.63	(0.58,1]	chr7	346123	197	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	4	138	2	3.1183	3.32686	3.53542	0.0152878	0.00181405	0.0849465	0.0215865
chr2	235511334	235511434	1062709	0	+	0.72	(0.58,1]	chr2	115651	161	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	78	2	3.30273	3.3267949999999997	3.35086	0.0218816	0.0107069	0.101015	0.0700635
chr2	61536394	61536491	1158358	0	-	0.391753	(0.39,0.419]	chr2	126966	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000676999.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000420673.6:ENST00000481214.1:ENST00000449444.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	96	2	3.23341	3.3265900000000004	3.41977	0.0391493	0.0116434	0.13192	0.0736274
chr2	78079246	78079346	1208242	0	-	0.36	(0.33,0.36]	chr2	130071	1390	INTRON	INTRON	ENSG00000227088	ENSG00000227088.2	ENST00000667782.1	lncRNA	lncRNA	lncRNA	lncRNA	3	123	2	3.12716	3.3263499999999997	3.52554	0.0229449	0.00812378	0.102982	0.0587857
chr1	161223199	161223266	607257	0	-	0.492537	(0.485,0.523]	chr1	72274	1	CDS	CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	APOA2	ENSG00000158874.11	ENST00000463812.1:ENST00000468465.5:ENST00000367990.7:ENST00000481413.1:ENST00000481511.5:ENST00000470459.6:ENST00000464492.5:ENST00000491350.1:ENST00000463273.5:ENST00000469730.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	120	2	2.90803	3.32621	3.74439	0.0145578	0.0122695	0.0824156	0.0759225
chr17	55276583	55276683	6757224	0	+	0.47	(0.45,0.485]	chr17	681704	81	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	614	2	3.28901	3.326055	3.3631	0.00662257	7.04386e-4	0.0540577	0.0111395
chr4	73417841	73417914	2056984	0	+	0.424658	(0.419,0.45]	chr4	210272	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ALB	ENSG00000163631.17	ENST00000621628.4:ENST00000295897.9:ENST00000415165.6:ENST00000621085.4:ENST00000503124.5:ENST00000476441.6:ENST00000509063.5:ENST00000401494.7:ENST00000505649.5:ENST00000511370.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	138	2	2.907	3.325085	3.74317	0.0361796	0.00581478	0.127908	0.047264
chr6	154748112	154748212	3044259	0	+	0.31	(0.29,0.33]	chr6	296626	57	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	54	2	1.9237	3.325025	4.72635	0.0672935	0.0654677	0.187786	0.163263
chr1	205448798	205448898	647853	0	-	0.54	(0.523,0.58]	chr1	76780	5	PRIMIRNA	PRIMIRNA	MIR135B	ENSG00000199059.3	ENST00000362189.3	miRNA	primary_miRNA	miRNA	primary_miRNA	3	54	2	1.99726	3.324415	4.65157	0.0787008	0.0559624	0.175203	0.171577
chr1	12585640	12585740	402459	0	-	0.63	(0.58,1]	chr1	46222	46	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	201	2	1.74808	3.32433	4.90058	0.0448044	8.93566e-4	0.154539	0.017813
chr16	334160	334260	6529850	0	-	0.51	(0.485,0.523]	chr16	648381	191	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	56	2	2.14204	3.3241899999999998	4.50634	0.0939553	0.042209000000000003	0.188571	0.149195
chr2	240523685	240523782	1394673	0	-	0.608247	(0.58,1]	chr2	149021	19	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000405523.7:ENST00000405002.5:ENST00000484526.5:ENST00000480230.5:ENST00000459901.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	105	2	2.22208	3.324085	4.42609	0.074035	4.76485e-4	0.171168	0.008444
chr20	41559527	41559626	7564233	0	-	0.414141	(0.39,0.419]	chr20	790090	78	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	158	2	2.43768	3.323945	4.21021	0.0527363	0.00174477	0.14912	0.0210473
chr7	92667934	92668034	3637276	0	-	0.4	(0.39,0.419]	chr7	350304	258	INTRON	INTRON	CDK6	ENSG00000105810.10	ENST00000424848.3:ENST00000265734.8	protein_coding	protein_coding	protein_coding	protein_coding	3	129	2	2.50045	3.323145	4.14584	0.0632788	0.00205794	0.161606	0.0235341
chr17	43542879	43542979	6909597	0	-	0.6	(0.58,1]	chr17	703271	60	INTRON	INTRON	ETV4	ENSG00000175832.13	ENST00000538265.5:ENST00000319349.10:ENST00000393664.6:ENST00000545954.5:ENST00000545089.5:ENST00000591713.5:ENST00000590236.5:ENST00000585508.5:ENST00000587151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	215	2	2.05124	3.322085	4.59293	0.0171341	0.00177443	0.0923809	0.0262073
chr17	77499530	77499627	6805393	0	+	0.701031	(0.58,1]	chr17	686872	10	UTR3	UTR3:EXON_MRNA	SEPTIN9	ENSG00000184640.20	ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000423034.6:ENST00000427674.6:ENST00000541152.6:ENST00000427180.5	protein_coding	protein_coding	protein_coding	protein_coding	12	390	2	3.21578	3.32148	3.42718	0.00468099	4.74036e-4	0.0447124	0.0084077
chr7	158738722	158738822	3742115	0	-	0.39	(0.36,0.39]	chr7	359807	3	SS5_PROX	SS5_PROX:INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000435514.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	47	2	2.55061	3.3212349999999997	4.09186	0.10062	0.0687088	0.196131	0.193274
chr11	70579829	70579929	5060071	0	-	0.6	(0.58,1]	chr11	492663	765	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	38	2	2.45703	3.321105	4.18518	0.0933945	0.0374658	0.188571	0.139793
chr18	77132079	77132179	7181644	0	-	0.72	(0.58,1]	chr18	730198	1	SS5_PROX	SS5_PROX:INTRON	MBP	ENSG00000197971.16	ENST00000355994.7:ENST00000579129.5:ENST00000397860.7:ENST00000487778.5:ENST00000490754.5:ENST00000497479.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.45703	3.321105	4.18518	0.0933945	0.0374658	0.188571	0.139793
chr19	18443955	18444054	7347620	0	-	0.646465	(0.58,1]	chr19	761434	14	UTR3	UTR3:EXON_MRNA	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	1	38	2	2.45703	3.321105	4.18518	0.0933945	0.0374658	0.188571	0.139793
chr19	58326045	58326137	7412925	0	-	0.586957	(0.58,1]	chr19	772005	3	INTRON	INTRON	ENSG00000283103	ENSG00000283103.4	ENST00000664481.1:ENST00000634676.2:ENST00000659246.1:ENST00000671228.1:ENST00000658331.1:ENST00000669883.1:ENST00000651375.3:ENST00000669440.2:ENST00000666049.1:ENST00000687313.1	lncRNA	lncRNA	lncRNA	lncRNA	1	38	2	2.45703	3.321105	4.18518	0.0933945	0.0374658	0.188571	0.139793
chr7	1066090	1066189	3526888	0	-	0.707071	(0.58,1]	chr7	340585	109	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	1	38	2	2.45703	3.321105	4.18518	0.0933945	0.0374658	0.188571	0.139793
chr16	16184658	16184758	6556718	0	-	0.65	(0.58,1]	chr16	653133	3	SS5_PROX	SS5_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	40	2	2.09276	3.321015	4.54927	0.0643046	0.0619333	0.180615	0.161669
chr6	143061166	143061213	3013430	0	+	0.702128	(0.58,1]	chr6	294853	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000367596.5	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.09276	3.321015	4.54927	0.0643046	0.0619333	0.180615	0.161669
chr7	138510003	138510103	3502501	0	+	0.43	(0.419,0.45]	chr7	337502	52	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	210	2	2.19024	3.320905	4.45157	0.0282917	0.00573722	0.122549	0.0499133
chr16	46906441	46906541	6442648	0	+	0.48	(0.45,0.485]	chr16	639008	2	SS3_PROX	SS3_PROX:INTRON	GPT2	ENSG00000166123.14	ENST00000340124.9:ENST00000562132.5:ENST00000440783.2	protein_coding	protein_coding	protein_coding	protein_coding	5	198	2	2.6397	3.3206049999999996	4.00151	0.0353661	7.57784e-4	0.127188	0.0117078
chr9	114199108	114199208	4226143	0	+	0.51	(0.485,0.523]	chr9	400776	27	INTRON	INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8:ENST00000451716.5:ENST00000494090.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.13331	3.319825	4.50634	0.0939553	0.0626854	0.188571	0.181933
chr9	133853392	133853491	4428932	0	-	0.626263	(0.58,1]	chr9	423304	187	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	2	84	2	2.97713	3.3197200000000002	3.66231	0.0226795	0.0122106	0.108193	0.0752279
chr17	57476782	57476882	6761980	0	+	0.47	(0.45,0.485]	chr17	682137	317	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	45	2	2.14074	3.3193	4.49786	0.101311	0.0632663	0.196131	0.183518
chr10	48040835	48040934	4680774	0	-	0.414141	(0.39,0.419]	chr10	446508	14	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	4	175	2	2.70737	3.31814	3.92891	0.0466115	0.00112623	0.143232	0.0154141
chr4	2814710	2814810	2000253	0	+	0.6	(0.58,1]	chr4	203929	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SH3BP2	ENSG00000087266.17	ENST00000503219.5:ENST00000512131.5:ENST00000503393.8:ENST00000510074.5:ENST00000511237.5:ENST00000504294.5:ENST00000508385.5:ENST00000513020.5:ENST00000511663.5:ENST00000512014.5:ENST00000513095.5:ENST00000502260.5:ENST00000435136.8:ENST00000511185.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	78	2	2.56085	3.3175749999999997	4.0743	0.0803939	0.00136577	0.177452	0.0176851
chr16	50624488	50624587	6452174	0	+	0.515152	(0.485,0.523]	chr16	639918	24	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	6	217	2	3.27282	3.317415	3.36201	0.0134332	0.00191492	0.0792526	0.0223591
chr19	34391295	34391395	7243263	0	+	0.49	(0.485,0.523]	chr19	741718	93	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	603	2	3.01822	3.317405	3.61659	0.00311445	0.00189882	0.0356735	0.0222276
chr10	79221872	79221972	4533580	0	+	0.59	(0.58,1]	chr10	432457	52	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	3	102	2	2.97017	3.31624	3.66231	0.0122106	0.00858469	0.0752279	0.0612699
chr16	85587432	85587532	6518947	0	+	0.68	(0.58,1]	chr16	646396	307	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	4	139	2	3.24259	3.3152049999999997	3.38782	0.0119819	0.00277379	0.0743424	0.0287134
chr15	25018067	25018166	6064034	0	+	0.454545	(0.45,0.485]	chr15	595414	30	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	5	196	2	3.12763	3.314945	3.50226	0.0217114	0.00162566	0.100615	0.0200325
chr1	61134427	61134527	146626	0	+	0.45	(0.419,0.45]	chr1	17147	15	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	96	2	2.91455	3.314505	3.71446	0.06467	0.00621762	0.162218	0.0496139
chr5	107999632	107999732	2735979	0	-	0.41	(0.39,0.419]	chr5	268845	1181	INTRON	INTRON	FBXL17	ENSG00000145743.18	ENST00000542267.7:ENST00000496714.2	protein_coding	protein_coding	protein_coding	protein_coding	2	94	2	2.80031	3.31416	3.82801	0.0728013	0.0045308	0.169397	0.0400651
chr1	54401360	54401460	490377	0	-	0.48	(0.45,0.485]	chr1	58336	1	SS5_PROX	SS5_PROX:INTRON	SSBP3	ENSG00000157216.16	ENST00000610401.5:ENST00000357475.9:ENST00000371319.8:ENST00000417664.7:ENST00000533946.6:ENST00000371320.8:ENST00000525990.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	103	2	2.87326	3.3137600000000003	3.75426	0.033576	0.0153755	0.133139	0.0849828
chr2	3330427	3330527	1081416	0	-	0.55	(0.523,0.58]	chr2	117645	100	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	115	2	3.1794	3.31355	3.4477	0.0242383	0.00624033	0.106588	0.0497314
chr3	48426708	48426806	1766701	0	-	0.591837	(0.58,1]	chr3	182283	10	INTRON	INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	244	2	2.98569	3.3135250000000003	3.64136	0.00530145	0.0016058	0.047841	0.0198329
chr16	89295184	89295284	6659757	0	-	0.7	(0.58,1]	chr16	666648	30	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	62	2	1.62103	3.31344	5.00585	0.0730791	0.0323732	0.19969	0.121593
chr10	102480669	102480765	4752750	0	-	0.583333	(0.58,1]	chr10	454352	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ACTR1A	ENSG00000138107.13	ENST00000636707.1:ENST00000369905.9:ENST00000470322.5:ENST00000487599.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	136	2	3.02247	3.3131950000000003	3.60392	0.0183788	0.00148337	0.0925773	0.0186585
chr21	42844473	42844572	7675416	0	-	0.585859	(0.58,1]	chr21	802287	8	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	2.61009	3.31316	4.01623	0.0747426	0.00161478	0.172361	0.0199131
chr20	62958945	62959041	7508286	0	+	0.6875	(0.58,1]	chr20	783180	10	INTRON	INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	192	2	2.75822	3.313145	3.86807	0.0163577	6.66992e-4	0.0875379	0.0107349
chr7	34725572	34725670	3572884	0	-	0.479592	(0.45,0.485]	chr7	344532	18	INTRON	INTRON	NPSR1-AS1	ENSG00000197085.11	ENST00000419766.5:ENST00000539747.5:ENST00000439852.5:ENST00000358772.8:ENST00000431669.5:ENST00000428922.5:ENST00000436945.4	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	94	2	3.1756	3.312685	3.44977	0.0255605	0.0180699	0.109062	0.0953579
chr22	24041373	24041473	7694749	0	+	0.54	(0.523,0.58]	chr22	805393	1	SS5_PROX	SS5_PROX:INTRON	CABIN1	ENSG00000099991.18	ENST00000454754.5:ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000445422.5:ENST00000398319.6	protein_coding	protein_coding	protein_coding	protein_coding	5	158	2	2.89945	3.31123	3.72301	0.015164	0.00518419	0.0844216	0.0439175
chr11	70812367	70812467	5062407	0	-	0.39	(0.36,0.39]	chr11	492713	48	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	93	2	2.99709	3.310815	3.62454	0.054944	0.00730728	0.153337	0.0550647
chr16	85386537	85386637	6516936	0	+	0.57	(0.523,0.58]	chr16	646391	272	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	1	43	2	2.48975	3.31018	4.13061	0.101574	0.0533354	0.196431	0.167062
chr4	121679587	121679686	2318946	0	-	0.555556	(0.523,0.58]	chr4	232991	7	INTRON	INTRON	ANXA5	ENSG00000164111.15	ENST00000296511.10:ENST00000501272.6:ENST00000506395.5:ENST00000515017.5:ENST00000511552.5:ENST00000509016.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	43	2	2.48975	3.31018	4.13061	0.101574	0.0533354	0.196431	0.167062
chr2	235513033	235513133	1062726	0	+	0.42	(0.419,0.45]	chr2	115651	178	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	131	2	3.00342	3.3101000000000003	3.61678	0.0229694	0.0118386	0.102982	0.0746945
chr19	1415143	1415242	7187498	0	+	0.484848	(0.45,0.485]	chr19	731286	47	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	463	2	2.96794	3.30975	3.65156	0.0120676	5.4353e-4	0.0745322	0.00927397
chr17	57108548	57108645	6759602	0	+	0.525773	(0.523,0.58]	chr17	681986	1	INTRON	INTRON	AKAP1	ENSG00000121057.13	ENST00000337714.8:ENST00000571629.5:ENST00000621116.4:ENST00000572557.5:ENST00000481416.5:ENST00000539273.5:ENST00000314126.4:ENST00000576295.5:ENST00000573326.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	54	2	2.03822	3.3094	4.58058	0.0860403	0.0516351	0.181766	0.166192
chr22	24103849	24103948	7695403	0	+	0.555556	(0.523,0.58]	chr22	805529	6	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	54	2	2.03822	3.3094	4.58058	0.0860403	0.0516351	0.181766	0.166192
chr16	85433417	85433517	6517405	0	+	0.65	(0.58,1]	chr16	646391	741	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.22208	3.30914	4.3962	0.074035	0.0250928	0.171168	0.114418
chr16	84735774	84735872	6514187	0	+	0.346939	(0.33,0.36]	chr16	646283	19	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	90	2	2.89559	3.3087549999999997	3.72192	0.0605295	0.00550077	0.158506	0.0454065
chr17	17823618	17823707	6865759	0	-	0.820225	(0.58,1]	chr17	695921	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.32207	3.308305	4.29454	0.0631758	0.0305531	0.161352	0.126768
chr2	215432923	215433023	1368645	0	-	0.43	(0.419,0.45]	chr2	145799	2	SS5_PROX	SS5_PROX:INTRON	FN1	ENSG00000115414.21	ENST00000421182.5:ENST00000323926.10:ENST00000336916.8:ENST00000357867.8:ENST00000359671.5:ENST00000443816.5:ENST00000446046.5:ENST00000354785.11:ENST00000432072.6:ENST00000356005.8:ENST00000426059.1	protein_coding	protein_coding	protein_coding	protein_coding	9	362	2	2.5547	3.308225	4.06175	0.0320806	4.54212e-4	0.121593	0.00818426
chr20	49694783	49694883	7575984	0	-	0.48	(0.45,0.485]	chr20	791530	377	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	6	223	2	3.26352	3.3080350000000003	3.35255	0.0147278	0.00214676	0.0827422	0.0241357
chr16	52509712	52509812	6589486	0	-	0.33	(0.29,0.33]	chr16	658702	337	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	86	2	3.20247	3.307185	3.4119	0.0346416	0.0103834	0.126432	0.0682598
chr16	87361555	87361653	6654790	0	-	0.520408	(0.485,0.523]	chr16	665713	8	INTRON	INTRON	FBXO31	ENSG00000103264.18	ENST00000311635.12:ENST00000565593.1:ENST00000618298.6:ENST00000636077.1:ENST00000561664.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	62	2	1.8299	3.30708	4.78426	0.0660335	0.0621287	0.181127	0.162385
chr11	102177037	102177137	4930415	0	+	0.53	(0.523,0.58]	chr11	475101	141	INTRON	INTRON	YAP1	ENSG00000137693.14	ENST00000282441.10:ENST00000537274.5:ENST00000345877.6:ENST00000615667.4:ENST00000526343.5:ENST00000531439.5:ENST00000629586.2:ENST00000524575.5:ENST00000526594.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	70	2	1.76808	3.3068850000000003	4.84569	0.0610722	0.0596436	0.177168	0.158506
chr17	58369226	58369325	6932561	0	-	0.59596	(0.58,1]	chr17	706609	53	INTRON	INTRON	RNF43	ENSG00000108375.13	ENST00000577716.5:ENST00000407977.7:ENST00000584437.5:ENST00000583753.5:ENST00000577625.5:ENST00000581868.1	protein_coding	protein_coding	protein_coding	protein_coding	2	78	2	2.50987	3.3061749999999996	4.10248	0.0865901	0.0012583	0.182221	0.0167083
chr3	66035495	66035595	1815837	0	-	0.41	(0.39,0.419]	chr3	187318	264	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	94	2	3.15657	3.306095	3.45562	0.0438962	0.0107538	0.139792	0.0702857
chr12	132528886	132528985	5352904	0	+	0.717172	(0.58,1]	chr12	523670	5	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	3	100	2	3.07041	3.305505	3.5406	0.0154024	0.00661304	0.0849828	0.0512951
chr16	22445327	22445426	6422255	0	+	0.454545	(0.45,0.485]	chr16	635236	72	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000446662.5:ENST00000381231.5:ENST00000309865.11:ENST00000691795.1:ENST00000308347.10:ENST00000687936.1:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	88	2	2.97186	3.305085	3.63831	0.0536124	0.00630258	0.150486	0.0501656
chr7	47473309	47473409	3588541	0	-	0.4	(0.39,0.419]	chr7	346123	202	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	2	93	2	3.01865	3.3046800000000003	3.59071	0.0536576	0.00792247	0.150594	0.057762
chr6	158561531	158561631	3063910	0	+	0.62	(0.58,1]	chr6	297687	9	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	9	288	2	2.91641	3.304585	3.69276	0.00888063	5.59806e-4	0.0635386	0.00945371
chr1	12586933	12587032	402472	0	-	0.50505	(0.485,0.523]	chr1	46222	59	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	88	2	3.30265	3.30431	3.30597	0.0306642	0.012958	0.119264	0.0778899
chr2	233164624	233164724	1058272	0	+	0.55	(0.523,0.58]	chr2	115119	2	SS5_PROX	SS5_PROX:INTRON	INPP5D	ENSG00000168918.14	ENST00000359570.9:ENST00000445964.6:ENST00000415617.5:ENST00000493078.1:ENST00000472517.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	85	2	2.88392	3.3041799999999997	3.72444	0.0586821	0.00470358	0.155604	0.0413976
chr17	316829	316929	6821444	0	-	0.56	(0.523,0.58]	chr17	689582	103	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	148	2	2.67271	3.3034600000000003	3.93421	0.0317474	0.00274644	0.12137	0.028553
chr2	62997765	62997865	816904	0	+	0.39	(0.36,0.39]	chr2	92205	6	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000496857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	285	2	3.19663	3.302675	3.40872	0.015245	0.0017187	0.0847346	0.0207557
chr1	214006564	214006663	339544	0	+	0.464646	(0.45,0.485]	chr1	38103	9	INTRON	INTRON	PROX1	ENSG00000117707.16	ENST00000498508.6:ENST00000366958.9:ENST00000261454.8:ENST00000435016.2	protein_coding	protein_coding	protein_coding	protein_coding	4	146	2	3.28219	3.302625	3.32306	0.0334207	0.00264681	0.12421	0.027979
chr13	98248803	98248903	5634719	0	+	0.47	(0.45,0.485]	chr13	553480	36	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	1	44	2	2.49062	3.30254	4.11446	0.104221	0.0592571	0.19835	0.176157
chr10	131916990	131917090	4616186	0	+	0.56	(0.523,0.58]	chr10	441069	40	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	89	2	3.229	3.30247	3.37594	0.0272868	0.0152072	0.112327	0.0861813
chr17	14398271	14398371	6683519	0	+	0.32	(0.29,0.33]	chr17	670768	7	INTRON	INTRON	ENSG00000230647	ENSG00000230647.2	ENST00000436469.1:ENST00000655690.1	lncRNA	lncRNA	lncRNA	lncRNA	2	86	2	2.69789	3.3019100000000003	3.90593	0.0745282	0.00310829	0.172224	0.0311915
chr22	20124722	20124819	7686890	0	+	0.618557	(0.58,1]	chr22	804214	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RANBP1	ENSG00000099901.17	ENST00000435265.5:ENST00000430524.6:ENST00000402752.5:ENST00000331821.7:ENST00000411892.5:ENST00000423859.5:ENST00000418705.2:ENST00000448394.2:ENST00000486575.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	106	2	2.70505	3.30184	3.89863	0.0165599	0.00766639	0.0917029	0.0583292
chr13	97338229	97338328	5631966	0	+	0.525253	(0.523,0.58]	chr13	553188	34	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	119	2	2.918	3.30178	3.68556	0.0558053	0.00162955	0.154188	0.020079
chr13	75392390	75392490	5727108	0	-	0.44	(0.419,0.45]	chr13	561722	152	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	4	155	2	2.86254	3.3017700000000003	3.741	0.0188635	0.0100697	0.0941462	0.0672403
chr2	127497143	127497242	1266286	0	-	0.343434	(0.33,0.36]	chr2	136447	6	INTRON	INTRON	IWS1	ENSG00000163166.15	ENST00000295321.9	protein_coding	protein_coding	protein_coding	protein_coding	3	124	2	3.02157	3.301505	3.58144	0.0503796	0.00260912	0.148216	0.0278348
chr6	166954401	166954499	3302037	0	-	0.418367	(0.39,0.419]	chr6	319750	20	EXON_MRNA	EXON_MRNA:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000358165.7:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	213	2	2.4019	3.3010849999999996	4.20027	0.0583327	0.0362591	0.175217	0.127941
chr1	61118827	61118927	146468	0	+	0.42	(0.419,0.45]	chr1	17144	66	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	177	2	2.86111	3.301055	3.741	0.0188635	0.00741879	0.0941462	0.0553519
chr19	35000986	35001062	7244866	0	+	0.710526	(0.58,1]	chr19	742059	1	INTRON	INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	180	2	2.73167	3.29973	3.86779	0.00910814	0.00326952	0.0631967	0.0366631
chr10	79222572	79222672	4533587	0	+	0.59	(0.58,1]	chr10	432457	59	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	3	102	2	2.73869	3.29931	3.85993	0.0310664	0.00251049	0.119778	0.026941
chr1	228143128	228143228	358015	0	+	0.6	(0.58,1]	chr1	40401	9	INTRON	INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	104	2	2.87663	3.29903	3.72143	0.0241649	0.00366718	0.106588	0.0346803
chr20	38422619	38422714	7561048	0	-	0.442105	(0.419,0.45]	chr20	789758	5	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000667188.1:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000667835.1:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000659186.1:ENST00000671309.1:ENST00000669405.1:ENST00000666806.1:ENST00000657665.1:ENST00000667282.1:ENST00000655311.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000659102.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000665693.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000667412.1:ENST00000654092.1:ENST00000653277.1:ENST00000663955.1:ENST00000664964.1:ENST00000658324.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000659753.1:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000655198.1:ENST00000662572.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	58	2	1.9738	3.298265	4.62273	0.103601	0.0645318	0.197541	0.185295
chr10	14556097	14556180	4633216	0	-	0.542169	(0.523,0.58]	chr10	442802	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	FAM107B	ENSG00000065809.14	ENST00000181796.7:ENST00000622567.4:ENST00000468747.5:ENST00000378467.8:ENST00000487335.5:ENST00000378465.7:ENST00000378458.6:ENST00000478076.5:ENST00000378462.5:ENST00000492700.5:ENST00000479731.5:ENST00000468492.5:ENST00000452706.6:ENST00000475786.5:ENST00000488576.5:ENST00000442012.5:ENST00000482277.5:ENST00000472095.5:ENST00000471815.5:ENST00000464952.5:ENST00000495292.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	43	2	2.09041	3.29817	4.50593	0.094303	0.0674148	0.192827	0.188571
chr17	57460518	57460618	6761817	0	+	0.57	(0.523,0.58]	chr17	682137	154	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	43	2	2.09041	3.29817	4.50593	0.094303	0.0674148	0.192827	0.188571
chr11	65425069	65425169	4871592	0	+	0.34	(0.33,0.36]	chr11	468177	24	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1	lncRNA	lncRNA	lncRNA	lncRNA	57	2202	2	3.24058	3.29796	3.35534	0.0039667	6.00539e-4	0.0407072	0.00994951
chr6	37926078	37926178	2909906	0	+	0.47	(0.45,0.485]	chr6	285645	105	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	1.88471	3.297905	4.7111	0.0781398	0.0572817	0.175203	0.174149
chr2	62772233	62772333	814622	0	+	0.38	(0.36,0.39]	chr2	92095	2	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000449820.5:ENST00000426940.5:ENST00000413434.5:ENST00000405482.5:ENST00000494958.1:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	93	2	3.1377	3.29763	3.45756	0.0447786	0.0106804	0.140478	0.0700154
chr2	55022293	55022392	1148250	0	-	0.434343	(0.419,0.45]	chr2	125466	79	INTRON	INTRON	RTN4	ENSG00000115310.19	ENST00000404909.5:ENST00000394611.6:ENST00000317610.11:ENST00000357732.8:ENST00000337526.11:ENST00000357376.7:ENST00000405240.5:ENST00000438462.1	protein_coding	protein_coding	protein_coding	protein_coding	3	130	2	3.08499	3.297185	3.50938	0.0509743	0.00355544	0.148503	0.0342681
chr12	48938359	48938457	5423620	0	-	0.653061	(0.58,1]	chr12	531642	28	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ARF3	ENSG00000134287.10	ENST00000256682.9:ENST00000485410.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	135	2	3.08073	3.29629	3.51185	0.0164389	0.00194298	0.0877632	0.022534
chr6	147741654	147741754	3029585	0	+	0.45	(0.419,0.45]	chr6	295875	42	INTRON	INTRON	ENSG00000227681	ENSG00000227681.5	ENST00000427015.1	lncRNA	lncRNA	lncRNA	lncRNA	2	95	2	2.82113	3.2962249999999997	3.77132	0.0733896	0.00544312	0.17026	0.0454065
chr2	138568042	138568140	904560	0	+	0.387755	(0.36,0.39]	chr2	101982	27	INTRON	INTRON	SPOPL	ENSG00000144228.9	ENST00000280098.9:ENST00000420679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	92	2	2.90564	3.295955	3.68627	0.0625454	0.00632798	0.160305	0.0501889
chr14	68902276	68902376	5999364	0	-	0.57	(0.523,0.58]	chr14	588711	11	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6:ENST00000683261.1:ENST00000684096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	87	2	3.27435	3.29577	3.31719	0.0321785	0.0124719	0.121593	0.0765738
chr17	7107151	7107230	6847701	0	-	0.708861	(0.58,1]	chr17	693407	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6	protein_coding	protein_coding	protein_coding	protein_coding	5	161	2	3.22547	3.29577	3.36607	0.0123946	0.00153087	0.0760412	0.0191213
chr3	73004541	73004641	1502805	0	+	0.49	(0.485,0.523]	chr3	160766	60	INTRON	INTRON	PPP4R2	ENSG00000163605.15	ENST00000482242.5:ENST00000356692.10:ENST00000470976.1:ENST00000488810.5:ENST00000495566.1:ENST00000476505.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	85	2	3.04904	3.29561	3.54218	0.0457169	0.00747698	0.142336	0.0555092
chrX	48805773	48805872	7879245	0	+	0.494949	(0.485,0.523]	chrX	826185	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HDAC6	ENSG00000094631.21	ENST00000376643.6:ENST00000469223.5:ENST00000376610.6:ENST00000483656.5:ENST00000462730.5:ENST00000376619.6:ENST00000477528.5:ENST00000465269.5:ENST00000334136.11:ENST00000476625.5:ENST00000646703.1:ENST00000477561.5:ENST00000643659.1:ENST00000643374.1:ENST00000644068.1:ENST00000643934.1:ENST00000489352.5:ENST00000443563.5:ENST00000440653.1:ENST00000468949.1:ENST00000647398.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	88	2	3.26255	3.29541	3.32827	0.0294165	0.0142848	0.116079	0.0833845
chr1	165900898	165900997	263218	0	+	0.464646	(0.45,0.485]	chr1	31081	25	INTRON	INTRON	UCK2	ENSG00000143179.16	ENST00000367879.9:ENST00000642653.1:ENST00000462329.5:ENST00000464197.5:ENST00000469256.6:ENST00000470820.1:ENST00000463772.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	90	2	2.57593	3.2948450000000005	4.01376	0.093234	0.0024644	0.188571	0.0265925
chr7	138001303	138001403	3720716	0	-	0.36	(0.33,0.36]	chr7	357312	3	SS5_PROX	SS5_PROX:INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5:ENST00000468127.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	93	2	3.22121	3.29481	3.36841	0.0295712	0.0171454	0.116079	0.0923809
chr11	70575729	70575829	5060030	0	-	0.66	(0.58,1]	chr11	492663	724	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	1	37	2	2.40217	3.293675	4.18518	0.100879	0.0374658	0.196131	0.139793
chr17	77482633	77482733	6805208	0	+	0.69	(0.58,1]	chr17	686820	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	1	37	2	2.40217	3.293675	4.18518	0.100879	0.0374658	0.196131	0.139793
chr9	4827631	4827729	4109466	0	+	0.326531	(0.29,0.33]	chr9	391326	2	INTRON	INTRON	RCL1	ENSG00000120158.12	ENST00000381750.9:ENST00000442869.5:ENST00000473230.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	85	2	2.73761	3.2933250000000003	3.84904	0.0704177	0.00359491	0.168159	0.0342681
chr6	159680403	159680503	3300262	0	-	0.29	[0,0.29]	chr6	319489	115	UTR3	UTR3:EXON_MRNA:INTRON	SOD2	ENSG00000112096.19	ENST00000538183.7:ENST00000546260.5:ENST00000367055.8:ENST00000367054.6:ENST00000546087.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	435	2	3.27457	3.29275	3.31093	0.00408278	8.73594e-4	0.0413652	0.0129186
chr10	28559933	28560033	4469684	0	+	0.33	(0.29,0.33]	chr10	427649	215	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	84	2	2.9213	3.2924249999999997	3.66355	0.0537281	0.00571018	0.150759	0.0467736
chr6	157313783	157313883	3298429	0	-	0.63	(0.58,1]	chr6	319197	204	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	6	194	2	2.87734	3.29232	3.7073	0.0164327	5.34646e-4	0.0877581	0.00914561
chr7	94938107	94938207	3419090	0	+	0.51	(0.485,0.523]	chr7	330364	262	INTRON	INTRON	PPP1R9A	ENSG00000158528.12	ENST00000433360.6:ENST00000340694.8:ENST00000424654.5:ENST00000433881.5:ENST00000456331.6:ENST00000289495.7	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.0783	3.29232	4.50634	0.0939553	0.0693	0.194071	0.188571
chr17	14326263	14326363	6683042	0	+	0.46	(0.45,0.485]	chr17	670741	209	INTRON	INTRON	HS3ST3B1	ENSG00000125430.9	ENST00000360954.3:ENST00000466596.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	88	2	3.12123	3.292195	3.46316	0.0428769	0.00952494	0.137868	0.0650078
chr8	133267430	133267526	4083993	0	-	0.583333	(0.58,1]	chr8	388323	1	SS3_PROX	SS3_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000517745.2:ENST00000676005.1:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674536.1:ENST00000675357.1:ENST00000675600.1:ENST00000674902.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	179	2	2.38295	3.292045	4.20114	0.0730701	0.00156882	0.199669	0.0244719
chr16	57373629	57373727	6466000	0	+	0.642857	(0.58,1]	chr16	641365	6	INTRON	INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	3.09824	3.2916350000000003	3.48503	0.0341637	0.006811	0.125129	0.0524379
chr9	124492829	124492929	4402652	0	-	0.61	(0.58,1]	chr9	419812	4	SS5_PROX	SS5_PROX:INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	2	75	2	2.6577	3.2911	3.9245	0.0695799	0.00209574	0.167028	0.0238576
chr16	50625224	50625310	6452182	0	+	0.639535	(0.58,1]	chr16	639920	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000566396.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	139	2	2.02791	3.2909749999999995	4.55404	0.0625428	3.19972e-4	0.160305	0.00635576
chr2	158680868	158680964	937233	0	+	0.375	(0.36,0.39]	chr2	103525	3	UTR3	UTR3:EXON_MRNA	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000480171.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	206	2	2.78423	3.2908150000000003	3.7974	0.0303712	0.00159277	0.11845	0.019733
chr21	45474777	45474876	7631014	0	+	0.515152	(0.485,0.523]	chr21	797674	4	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	6	216	2	2.98542	3.290785	3.59615	0.00874919	0.00420467	0.0629213	0.0380601
chr22	36237863	36237959	7806236	0	-	0.666667	(0.58,1]	chr22	817915	1	INTRON	INTRON	APOL2	ENSG00000128335.14	ENST00000358502.10:ENST00000249066.10:ENST00000451256.6:ENST00000529194.5:ENST00000454728.5:ENST00000476579.1:ENST00000489186.1:ENST00000473549.1:ENST00000484830.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	91	2	2.18445	3.290325	4.3962	0.0478088	0.0250928	0.144601	0.114418
chr5	139653962	139654062	2549700	0	+	0.58	(0.523,0.58]	chr5	253168	24	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	2	86	2	3.22074	3.2900400000000003	3.35934	0.0350559	0.0113252	0.12704	0.071894
chr19	954688	954788	7185393	0	+	0.67	(0.58,1]	chr19	730741	216	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	80	2	3.03676	3.2886800000000003	3.5406	0.0198789	0.0154024	0.100864	0.0849828
chr16	89305844	89305943	6659870	0	-	0.69697	(0.58,1]	chr16	666665	1	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1:ENST00000643147.1:ENST00000647539.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	76	2	2.56085	3.2885400000000002	4.01623	0.0803939	0.00161478	0.177452	0.0199131
chr8	41603765	41603864	3807502	0	+	0.606061	(0.58,1]	chr8	366417	41	INTRON	INTRON	GPAT4	ENSG00000158669.11	ENST00000396987.7:ENST00000519853.5:ENST00000521806.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	39	2	2.02776	3.288515	4.54927	0.0700362	0.0643046	0.195209	0.161669
chr17	57107678	57107761	6759592	0	+	0.46988	(0.45,0.485]	chr17	681980	1	SS3_PROX	SS3_PROX:INTRON	AKAP1	ENSG00000121057.13	ENST00000337714.8:ENST00000571629.5:ENST00000621116.4:ENST00000572557.5:ENST00000481416.5:ENST00000539273.5:ENST00000314126.4:ENST00000576295.5:ENST00000573326.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	88	2	2.69512	3.28789	3.88066	0.0794176	0.00346544	0.176565	0.0335664
chr11	70587029	70587129	5060143	0	-	0.58	(0.523,0.58]	chr11	492663	837	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	84	2	2.9513	3.287785	3.62427	0.0531089	0.0060311	0.149478	0.0484641
chr19	949800	949900	7185344	0	+	0.51	(0.485,0.523]	chr19	730741	167	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	149	2	2.34984	3.2875750000000004	4.22531	0.0271926	0.0060869	0.119337	0.0515813
chr2	240626360	240626457	1075207	0	+	0.608247	(0.58,1]	chr2	116658	4	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2:ENST00000407714.2	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	3.25332	3.2874600000000003	3.3216	0.0230709	0.0120565	0.102982	0.0754623
chr16	89436219	89436318	6661196	0	-	0.525253	(0.523,0.58]	chr16	666753	45	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	120	2	2.81323	3.285595	3.75796	0.0650388	0.00133135	0.162385	0.0173248
chr17	316630	316730	6821442	0	-	0.6	(0.58,1]	chr17	689582	101	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	101	2	2.86246	3.285355	3.70825	0.0112778	0.0111705	0.0717097	0.0716525
chr20	47532205	47532305	7488877	0	+	0.49	(0.485,0.523]	chr20	780647	298	INTRON	INTRON	NCOA3	ENSG00000124151.19	ENST00000371998.8:ENST00000372004.7:ENST00000371997.3	protein_coding	protein_coding	protein_coding	protein_coding	3	114	2	3.13862	3.2850349999999997	3.43145	0.0398026	0.00331271	0.133884	0.0324671
chr17	7108822	7108888	6847721	0	-	0.666667	(0.58,1]	chr17	693420	2	CDS	CDS:EXON_MRNA	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	193	2	2.93635	3.28471	3.63307	0.0146321	6.75388e-4	0.0826577	0.010811
chr3	188265952	188266052	1652918	0	+	0.45	(0.419,0.45]	chr3	173754	254	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	3	129	2	2.47479	3.2847049999999998	4.09462	0.068283	0.00248506	0.164651	0.0267262
chr14	19304114	19304214	5928403	0	-	0.61	(0.58,1]	chr14	580403	1	SS3_PROX	SS3_PROX:INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	15	459	2	3.1638	3.28465	3.4055	0.00308315	7.14033e-4	0.0354883	0.0112158
chr9	134342528	134342628	4260848	0	+	0.65	(0.58,1]	chr9	406311	155	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	89	2	2.71042	3.28443	3.85844	0.0396128	0.00830865	0.143388	0.061139
chr15	70097683	70097782	6312702	0	-	0.676768	(0.58,1]	chr15	622362	10	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	TLE3	ENSG00000140332.18	ENST00000558939.5:ENST00000451782.7:ENST00000317509.12:ENST00000561453.5:ENST00000557997.5:ENST00000559191.5:ENST00000559574.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	162	2	2.81581	3.28397	3.75213	0.0185223	9.51475e-4	0.0928804	0.0136675
chr17	55272784	55272884	6757186	0	+	0.53	(0.523,0.58]	chr17	681704	43	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	172	2	2.61303	3.28357	3.95411	0.010063	0.00861366	0.0677615	0.0612699
chr1	2242323	2242422	4634	0	+	0.535354	(0.523,0.58]	chr1	1048	93	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	86	2	2.57767	3.283305	3.98894	0.090356	0.00237791	0.186369	0.026
chr1	89854453	89854553	181035	0	+	0.44	(0.419,0.45]	chr1	19585	74	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	3	127	2	3.2131	3.28292	3.35274	0.0423761	0.00522519	0.13762	0.0442559
chr13	113049326	113049425	5656128	0	+	0.686869	(0.58,1]	chr13	555180	21	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	108	2	3.08073	3.28288	3.48503	0.0164389	0.006811	0.0877632	0.0524379
chr12	132954546	132954646	5542077	0	-	0.55	(0.523,0.58]	chr12	547064	59	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	86	2	3.2478	3.282495	3.31719	0.0335771	0.0124719	0.124319	0.0765738
chr2	241669103	241669185	1078222	0	+	0.487805	(0.485,0.523]	chr2	117194	4	SS5_PROX	SS5_PROX:INTRON	ATG4B	ENSG00000168397.17	ENST00000405546.7:ENST00000402096.5:ENST00000494465.5:ENST00000404914.8:ENST00000482507.5:ENST00000344376.9:ENST00000428861.1:ENST00000460211.5:ENST00000475693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	115	2	2.93924	3.282355	3.62547	0.0178931	0.0113973	0.0918433	0.0722395
chr2	102143320	102143420	863821	0	+	0.55	(0.523,0.58]	chr2	97796	3	SS5_PROX	SS5_PROX:INTRON	IL1R1	ENSG00000115594.12	ENST00000452403.5:ENST00000409929.5:ENST00000424272.5:ENST00000409589.5:ENST00000409329.5:ENST00000450319.5:ENST00000428279.5:ENST00000442590.5:ENST00000410023.6:ENST00000409288.5	protein_coding	protein_coding	protein_coding	protein_coding	2	84	2	3.04682	3.281725	3.51663	0.0459721	0.00782908	0.142664	0.0574276
chr15	24984617	24984716	6063691	0	+	0.353535	(0.33,0.36]	chr15	595387	23	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	15	538	2	3.18187	3.280865	3.37986	0.00692177	0.00123327	0.0553898	0.0164614
chr1	248854879	248854979	709843	0	-	0.59	(0.58,1]	chr1	83014	1	SS5_PROX	SS5_PROX:INTRON	ZNF692	ENSG00000171163.16	ENST00000463519.5:ENST00000306601.9:ENST00000366471.7:ENST00000533927.5:ENST00000476503.5:ENST00000477070.6:ENST00000412341.6:ENST00000482023.5:ENST00000451251.5:ENST00000470787.6:ENST00000474351.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	103	2	2.87663	3.28063	3.68463	0.0241649	0.00404771	0.106588	0.0371291
chr16	85430019	85430119	6517371	0	+	0.54	(0.523,0.58]	chr16	646391	707	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.12522	3.280595	4.43597	0.0984283	0.0313935	0.192982	0.127822
chr20	48933402	48933502	7490269	0	+	0.49	(0.485,0.523]	chr20	780774	110	INTRON	INTRON	ARFGEF2	ENSG00000124198.10	ENST00000371917.5:ENST00000681399.1:ENST00000679436.1:ENST00000681885.1:ENST00000681021.1:ENST00000680871.1:ENST00000681656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	84	2	3.0179	3.28004	3.54218	0.0479403	0.00747698	0.144601	0.0555092
chr6	34587485	34587584	3124180	0	-	0.585859	(0.58,1]	chr6	304700	3	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	5	159	2	3.15491	3.2785900000000003	3.40227	0.0142368	0.00137301	0.0817691	0.0177762
chr2	26091763	26091863	731397	0	+	0.42	(0.419,0.45]	chr2	85215	491	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	96	2	2.5763	3.277495	3.97869	0.100818	0.00330911	0.196131	0.0324356
chr8	22385179	22385279	3770200	0	+	0.52	(0.485,0.523]	chr8	362727	53	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	2	84	2	3.04904	3.27722	3.5054	0.0457169	0.00816275	0.142336	0.0589533
chr2	239347681	239347781	1392187	0	-	0.51	(0.485,0.523]	chr2	148752	232	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	113	2	3.05773	3.27679	3.49585	0.0222996	0.00856934	0.102226	0.0612055
chr13	98260101	98260201	5634832	0	+	0.37	(0.36,0.39]	chr13	553480	149	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	6	244	2	2.716	3.2765500000000003	3.8371	0.0100379	0.00704395	0.0670367	0.0558168
chr20	44405957	44406057	7482975	0	+	0.6	(0.58,1]	chr20	779647	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	160	2	2.98228	3.2765449999999996	3.57081	0.0198344	8.19984e-4	0.096302	0.0123932
chr17	39671685	39671779	6898415	0	-	0.62766	(0.58,1]	chr17	700782	7	UTR3	UTR3:EXON_MRNA	PGAP3	ENSG00000161395.14	ENST00000579146.5:ENST00000300658.9:ENST00000378011.8:ENST00000309862.10:ENST00000619169.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	98	2	3.03776	3.276365	3.51497	0.0161632	0.00720487	0.0872435	0.0543254
chr16	81546381	81546481	6508757	0	+	0.52	(0.485,0.523]	chr16	645911	505	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	4	135	2	2.90517	3.275575	3.64598	0.0172726	0.00733304	0.0897247	0.0550721
chr10	15149141	15149241	4636632	0	-	0.5	(0.485,0.523]	chr10	443033	72	INTRON	INTRON	NMT2	ENSG00000152465.18	ENST00000378165.9:ENST00000378150.1	protein_coding	protein_coding	protein_coding	protein_coding	2	89	2	3.12385	3.275125	3.4264	0.025039	0.0193526	0.10758	0.0994526
chr12	26773558	26773658	5401005	0	-	0.4	(0.39,0.419]	chr12	528735	474	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000545235.1:ENST00000242737.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	94	2	3.26675	3.2746	3.28245	0.0363575	0.01622	0.128173	0.0902823
chr10	79222772	79222872	4533589	0	+	0.59	(0.58,1]	chr10	432457	61	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	2.79178	3.2745550000000003	3.75733	0.0565563	0.0033279	0.154343	0.0325742
chr6	160068485	160068571	3066299	0	+	0.581395	(0.58,1]	chr6	298073	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	73	2	2.79178	3.2745550000000003	3.75733	0.0565563	0.0033279	0.154343	0.0325742
chr21	15044972	15045072	7640812	0	-	0.31	(0.29,0.33]	chr21	799123	10	INTRON	INTRON	NRIP1	ENSG00000180530.11	ENST00000400202.5:ENST00000318948.7:ENST00000400199.5:ENST00000638122.1:ENST00000637963.1:ENST00000637630.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	187	2	2.38349	3.27446	4.16543	0.0491166	4.42588e-4	0.146142	0.00803404
chrX	78122135	78122234	7912474	0	+	0.454545	(0.45,0.485]	chrX	828893	36	INTRON	INTRON	PGK1	ENSG00000102144.15	ENST00000644362.1:ENST00000491291.1:ENST00000373316.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	101	2	2.04028	3.2744	4.50852	0.0760175	0.0302873	0.174462	0.126768
chr16	47403710	47403810	6585231	0	-	0.42	(0.419,0.45]	chr16	658341	76	INTRON	INTRON	ITFG1	ENSG00000129636.13	ENST00000320640.11:ENST00000544001.6:ENST00000569551.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	94	2	2.72124	3.27363	3.82602	0.0837482	0.00478241	0.181508	0.0415621
chr15	78932557	78932657	6337000	0	-	0.55	(0.523,0.58]	chr15	624713	2	UTR3	UTR3:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTSH	ENSG00000103811.18	ENST00000677011.1:ENST00000220166.10:ENST00000676639.1:ENST00000676510.1:ENST00000678727.1:ENST00000679334.1:ENST00000679017.1:ENST00000677810.1:ENST00000676763.1:ENST00000678886.1:ENST00000677921.1:ENST00000676596.1:ENST00000678487.1:ENST00000649928.2:ENST00000527715.6:ENST00000530010.6:ENST00000676671.1:ENST00000534533.6:ENST00000678283.1:ENST00000678841.1:ENST00000679125.1:ENST00000677316.1:ENST00000678031.1:ENST00000678644.1:ENST00000676808.1:ENST00000677207.1:ENST00000677238.1:ENST00000678281.1:ENST00000678799.1:ENST00000525807.6:ENST00000528191.6:ENST00000678817.1:ENST00000676880.1:ENST00000528741.6:ENST00000678415.1:ENST00000679172.1:ENST00000533777.5:ENST00000534237.6:ENST00000677448.1:ENST00000677534.1:ENST00000677367.1:ENST00000678397.1:ENST00000679047.1:ENST00000676865.1:ENST00000677102.1:ENST00000677874.1:ENST00000677254.1:ENST00000677936.1:ENST00000678940.1:ENST00000677789.1:ENST00000615999.5:ENST00000677049.1:ENST00000678033.1:ENST00000679211.1:ENST00000676850.1:ENST00000534268.6:ENST00000529861.6:ENST00000676738.1:ENST00000677320.1:ENST00000529612.6:ENST00000676668.1:ENST00000529263.7:ENST00000534038.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	3	140	2	3.13506	3.273625	3.41219	0.0186841	0.0123141	0.0976296	0.075641
chr19	6679308	6679381	7322512	0	-	0.60274	(0.58,1]	chr19	756377	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000599899.5:ENST00000695690.1:ENST00000695691.1:ENST00000695689.1:ENST00000695653.1:ENST00000695654.1:ENST00000599668.1:ENST00000601008.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	98	2	3.13234	3.2729150000000002	3.41349	0.0322188	0.00257862	0.121593	0.0275472
chr2	54578377	54578477	799498	0	+	0.46	(0.45,0.485]	chr2	90800	191	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7:ENST00000333896.5	protein_coding	protein_coding	protein_coding	protein_coding	2	86	2	2.90749	3.2729	3.63831	0.0588897	0.00630258	0.15607	0.0501656
chr16	50526941	50527041	6451203	0	+	0.61	(0.58,1]	chr16	639837	4	SS5_PROX	SS5_PROX:INTRON	ENSG00000260573	ENSG00000260573.4	ENST00000646992.1	lncRNA	lncRNA	lncRNA	lncRNA	3	97	2	3.19406	3.2724599999999997	3.35086	0.0218816	0.00474968	0.101015	0.0413976
chr1	160997682	160997781	606138	0	-	0.383838	(0.36,0.39]	chr1	72014	26	UTR3	UTR3:EXON_MRNA	F11R	ENSG00000158769.18	ENST00000621309.4:ENST00000368026.11	protein_coding	protein_coding	protein_coding	protein_coding	4	169	2	3.11681	3.271915	3.42702	0.0242515	0.00412909	0.106588	0.0375597
chr11	377827	377926	4784078	0	+	0.636364	(0.58,1]	chr11	457781	1	INTRON	INTRON	B4GALNT4	ENSG00000182272.12	ENST00000329962.11	protein_coding	protein_coding	protein_coding	protein_coding	3	104	2	2.66286	3.270765	3.87867	0.0183006	0.00797934	0.0958973	0.0596361
chr21	44868414	44868513	7678526	0	-	0.555556	(0.523,0.58]	chr21	802773	24	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	332	2	2.29636	3.270455	4.24455	0.0302576	0.00165496	0.126768	0.0251425
chr22	32803221	32803320	7717641	0	+	0.444444	(0.419,0.45]	chr22	807776	7	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	3	145	2	3.18659	3.270285	3.35398	0.0233358	0.0139289	0.103783	0.0824192
chr16	87918361	87918461	6657549	0	-	0.64	(0.58,1]	chr16	666059	131	INTRON	INTRON	CA5A	ENSG00000174990.8	ENST00000649158.1:ENST00000648177.1:ENST00000649794.3:ENST00000648022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	192	2	2.73501	3.270105	3.8052	0.0216297	3.9134e-4	0.100615	0.00735497
chr18	58047415	58047510	7071474	0	+	0.515789	(0.485,0.523]	chr18	721085	3	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5:ENST00000588516.5:ENST00000456986.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	148	2	2.73295	3.2699	3.80685	0.0285866	0.00388927	0.115498	0.0363508
chr3	51666786	51666885	1472208	0	+	0.464646	(0.45,0.485]	chr3	157989	35	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	2	86	2	3.00299	3.26939	3.53579	0.0512051	0.00804225	0.148503	0.0582806
chr17	58089875	58089974	6764163	0	+	0.444444	(0.419,0.45]	chr17	682242	7	UTR3	UTR3:EXON_MRNA	DYNLL2	ENSG00000264364.3	ENST00000579991.3	protein_coding	protein_coding	protein_coding	protein_coding	4	172	2	2.93912	3.269205	3.59929	0.0344378	0.0028371	0.126025	0.0293146
chr16	50622008	50622108	6452149	0	+	0.59	(0.58,1]	chr16	639917	3	SS5_PROX	SS5_PROX:INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	11	266	2	2.6256	3.2684249999999997	3.91125	0.00375796	0.0029754	0.0353636	0.0347642
chr11	65429862	65429962	4871640	0	+	0.58	(0.523,0.58]	chr11	468177	72	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	94	3640	2	3.06783	3.26804	3.46825	0.00247053	6.74034e-4	0.0313832	0.0108081
chr3	42647552	42647650	1452467	0	+	0.397959	(0.39,0.419]	chr3	155084	17	UTR3	UTR3:EXON_MRNA	NKTR	ENSG00000114857.19	ENST00000429888.5:ENST00000232978.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	203	2	3.18525	3.2676350000000003	3.35002	0.0166628	0.00439342	0.0884836	0.0393688
chr19	34392768	34392864	7243278	0	+	0.552083	(0.523,0.58]	chr19	741719	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000589985.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	371	2	2.53853	3.26734	3.99615	0.0069725	0.00272622	0.0533851	0.0331786
chr11	74822104	74822204	4895359	0	+	0.48	(0.45,0.485]	chr11	472484	40	INTRON	INTRON	RNF169	ENSG00000166439.6	ENST00000299563.5	protein_coding	protein_coding	protein_coding	protein_coding	2	86	2	3.03347	3.2667	3.49993	0.0489373	0.00874614	0.146035	0.0613439
chr2	31871844	31871943	1115554	0	-	0.454545	(0.45,0.485]	chr2	122032	15	INTRON	INTRON	MEMO1:DPY30	ENSG00000162959.14:ENSG00000162961.14	ENST00000295065.9:ENST00000446765.5:ENST00000404530.6:ENST00000379383.7:ENST00000490459.5:ENST00000426310.6:ENST00000422936.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	86	2	3.03347	3.2667	3.49993	0.0489373	0.00874614	0.146035	0.0613439
chr14	19302044	19302142	5928382	0	-	0.765306	(0.58,1]	chr14	580401	35	EXON_LNCRNA	EXON_LNCRNA:INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	74	2	3.23007	3.2664	3.30273	0.0271644	0.0107069	0.112113	0.0700635
chr6	158021484	158021584	3059707	0	+	0.66	(0.58,1]	chr6	297373	33	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	4	118	2	2.6736	3.26602	3.85844	0.0105869	0.00830865	0.0694649	0.061139
chr11	57498963	57499052	5038761	0	-	0.561798	(0.523,0.58]	chr11	488203	8	INTRON	INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000533515.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	116	2	2.88392	3.265935	3.64795	0.0586821	0.00180827	0.155604	0.0215456
chr12	125126418	125126515	5349570	0	+	0.494845	(0.485,0.523]	chr12	523182	8	EXON_MRNA	EXON_MRNA:INTRON	AACS	ENSG00000081760.17	ENST00000316519.11:ENST00000316543.14:ENST00000539251.5:ENST00000538851.5:ENST00000545511.5:ENST00000536118.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	83	2	2.95352	3.2657800000000003	3.57804	0.0528263	0.00685872	0.14912	0.0526888
chr11	710986	711085	4785348	0	+	0.59596	(0.58,1]	chr11	458134	1	INTRON	INTRON	EPS8L2	ENSG00000177106.17	ENST00000524763.5:ENST00000533256.5:ENST00000614442.4:ENST00000534755.5:ENST00000529346.5:ENST00000650127.1:ENST00000526909.5:ENST00000318562.13:ENST00000533500.5:ENST00000527807.5:ENST00000531348.5:ENST00000530636.5:ENST00000526198.5:ENST00000530118.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	145	2	2.5145	3.265365	4.01623	0.0262074	0.00161478	0.110264	0.0199131
chr13	75392590	75392690	5727110	0	-	0.55	(0.523,0.58]	chr13	561722	154	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	2.7389	3.2632250000000003	3.78755	0.072318	0.00401039	0.168347	0.0371192
chr6	349541	349639	2824330	0	+	0.653061	(0.58,1]	chr6	277235	7	UTR3	UTR3:EXON_MRNA:INTRON	DUSP22	ENSG00000112679.15	ENST00000344450.9:ENST00000419235.7:ENST00000603726.5:ENST00000604971.5:ENST00000604988.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	99	2	2.9908	3.26311	3.53542	0.0409591	0.00181405	0.136191	0.0215865
chr21	44859562	44859662	7678430	0	-	0.5	(0.485,0.523]	chr21	802754	28	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000397886.3:ENST00000474737.5:ENST00000494690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	139	2	3.12385	3.262725	3.4016	0.0193526	0.0125057	0.0994526	0.0761905
chr1	31579913	31580013	81046	0	+	0.52	(0.485,0.523]	chr1	9289	1	SS5_PROX	SS5_PROX:INTRON	LINC01226:TINAGL1	ENSG00000284543.1:ENSG00000142910.16	ENST00000639839.1:ENST00000640226.1:ENST00000457433.6:ENST00000271064.12:ENST00000461030.5:ENST00000478398.5:ENST00000481165.5:ENST00000537531.2:ENST00000468635.5:ENST00000498429.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA:processed_transcript	2	112	2	2.45723	3.2621000000000002	4.06697	0.0700289	0.00816193	0.195209	0.0605492
chr1	26996698	26996796	70362	0	+	0.479592	(0.45,0.485]	chr1	7897	17	INTRON	INTRON	TRNP1	ENSG00000253368.4	ENST00000522111.3:ENST00000531285.1	protein_coding	protein_coding	protein_coding	protein_coding	5	160	2	2.51582	3.2606900000000003	4.00556	0.0145868	0.00992252	0.0837727	0.0671959
chr9	69715169	69715268	4313142	0	-	0.282828	[0,0.29]	chr9	412346	58	UTR3	UTR3:EXON_MRNA	PTAR1	ENSG00000188647.13	ENST00000377200.9:ENST00000340434.5	protein_coding	protein_coding	protein_coding	protein_coding	5	140	2	2.75503	3.2603600000000004	3.76569	0.0104848	0.00703025	0.0690475	0.0537856
chr1	54874294	54874393	490993	0	-	0.383838	(0.36,0.39]	chr1	58452	23	INTRON	INTRON	DHCR24	ENSG00000116133.13	ENST00000371269.9:ENST00000647912.1:ENST00000535035.6:ENST00000649769.1:ENST00000648712.1:ENST00000648728.1:ENST00000436604.2:ENST00000647585.1:ENST00000648641.1:ENST00000650362.1:ENST00000648182.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	123	2	2.44026	3.2603299999999997	4.0804	0.0685343	0.0024203	0.165066	0.0261589
chr1	33012987	33013083	439891	0	-	0.385417	(0.36,0.39]	chr1	52495	10	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	AK2	ENSG00000004455.18	ENST00000373449.7:ENST00000672715.1:ENST00000695598.1:ENST00000550338.6:ENST00000695599.1:ENST00000354858.11:ENST00000695600.1:ENST00000695601.1:ENST00000491241.2:ENST00000695602.1:ENST00000469238.2:ENST00000695603.1:ENST00000695604.1:ENST00000672308.1:ENST00000548033.5:ENST00000467905.5:ENST00000480134.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	90	2	2.77391	3.25969	3.74547	0.0750023	0.00550271	0.172839	0.0454065
chr2	21038803	21038899	1100844	0	-	0.270833	[0,0.29]	chr2	120062	3	INTRON	INTRON	APOB	ENSG00000084674.15	ENST00000233242.5:ENST00000673739.1:ENST00000673882.1:ENST00000399256.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	66	2	1.76296	3.259615	4.75627	0.0584672	0.050276	0.175618	0.148161
chr6	158243993	158244093	3060955	0	+	0.4	(0.39,0.419]	chr6	297572	113	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	5	168	2	2.89387	3.25908	3.62429	0.021298	0.00653242	0.0998147	0.0507515
chrX	300511	300609	7829276	0	+	0.306122	(0.29,0.33]	chrX	821899	13	UTR3	UTR3:EXON_MRNA	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding	5	218	2	2.45446	3.2589	4.06334	0.0219101	0.00329515	0.107001	0.0368376
chr6	348851	348951	2824323	0	+	0.63	(0.58,1]	chr6	277234	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	DUSP22	ENSG00000112679.15	ENST00000344450.9:ENST00000603453.5:ENST00000605315.5:ENST00000603795.5:ENST00000605035.5:ENST00000419235.7:ENST00000603726.5:ENST00000604971.5:ENST00000604914.5:ENST00000604988.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	73	2	2.6577	3.2588150000000002	3.85993	0.0695799	0.00251049	0.167028	0.026941
chrX	1397624	1397724	7830137	0	+	0.58	(0.523,0.58]	chrX	822054	4	SS5_PROX	SS5_PROX:INTRON	LINC00106	ENSG00000236871.7	ENST00000434938.7:ENST00000430235.7	lncRNA	lncRNA	lncRNA	lncRNA	3	113	2	2.58039	3.2573	3.93421	0.0503562	0.00274644	0.148216	0.028553
chr17	83026874	83026974	6990816	0	-	0.64	(0.58,1]	chr17	715120	120	INTRON	INTRON	B3GNTL1	ENSG00000175711.9	ENST00000320865.4:ENST00000576599.5:ENST00000570947.5:ENST00000571954.5:ENST00000573629.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	74	2	3.25332	3.257275	3.26123	0.0257049	0.0120565	0.109543	0.0754623
chr16	89297274	89297374	6659778	0	-	0.43	(0.419,0.45]	chr16	666648	51	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	129	2	2.91455	3.25692	3.59929	0.06467	0.0028371	0.162218	0.0293146
chr2	39106141	39106241	1127215	0	-	0.47	(0.45,0.485]	chr2	123480	78	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	125	2	2.58493	3.255745	3.92656	0.0263561	0.0114063	0.118015	0.0723462
chr21	44025712	44025811	7625805	0	+	0.454545	(0.45,0.485]	chr21	796980	128	INTRON	INTRON	TRAPPC10	ENSG00000160218.13	ENST00000291574.9:ENST00000380221.7:ENST00000422875.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	85	2	2.94003	3.255405	3.57078	0.0561701	0.00740503	0.154188	0.0553519
chr13	50573398	50573498	5598359	0	+	0.43	(0.419,0.45]	chr13	551685	397	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1:ENST00000484869.6	lncRNA	lncRNA	lncRNA	lncRNA	5	210	2	2.85909	3.25488	3.65067	0.0289	0.00249015	0.116079	0.0267758
chr13	97340222	97340322	5631986	0	+	0.35	(0.33,0.36]	chr13	553188	54	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	89	2	2.56404	3.254735	3.94543	0.0954498	0.0031765	0.189038	0.0316024
chr6	128516928	128517028	3257140	0	-	0.3	(0.29,0.33]	chr6	315230	247	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000524534.5:ENST00000525459.1:ENST00000392449.4:ENST00000532751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	133	2	3.07132	3.2545	3.43768	0.0234876	0.00491799	0.104407	0.0423134
chr16	89292398	89292498	6659729	0	-	0.54	(0.523,0.58]	chr16	666648	2	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	491	2	2.8375	3.25393	3.67036	0.0169486	2.34665e-4	0.08891	0.00507026
chr15	25018558	25018657	6064039	0	+	0.424242	(0.419,0.45]	chr15	595414	35	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	5	205	2	3.03139	3.253545	3.4757	0.0298409	0.00221039	0.11676	0.0246613
chr6	47268778	47268878	3144094	0	-	0.53	(0.523,0.58]	chr6	306750	149	INTRON	INTRON	TNFRSF21	ENSG00000146072.6	ENST00000296861.2	protein_coding	protein_coding	protein_coding	protein_coding	4	157	2	2.70025	3.253525	3.8068	0.0763549	5.99712e-4	0.174544	0.00994266
chr20	62272259	62272359	7506829	0	+	0.6	(0.58,1]	chr20	782703	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000642957.1:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	102	2	2.89838	3.253225	3.60807	0.02321	0.00495688	0.10341	0.0425347
chr16	85373443	85373543	6516805	0	+	0.63	(0.58,1]	chr16	646391	141	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	86	2	2.71042	3.2532	3.79598	0.0396128	0.00940557	0.143388	0.0653252
chr11	70657331	70657430	5060848	0	-	0.383838	(0.36,0.39]	chr11	492672	25	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	90	2	2.70325	3.25279	3.80233	0.0824711	0.00480386	0.179396	0.0416515
chrX	20261611	20261710	7995377	0	-	0.333333	(0.33,0.36]	chrX	836371	196	INTRON	INTRON	RPS6KA3	ENSG00000177189.14	ENST00000379565.9:ENST00000643085.1:ENST00000645270.1:ENST00000643402.1:ENST00000644368.1:ENST00000647265.1:ENST00000645268.1:ENST00000646610.1:ENST00000643337.1:ENST00000642835.1:ENST00000644893.1:ENST00000438357.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	140	2	2.91636	3.2521649999999998	3.58797	0.0207035	0.00805316	0.0986463	0.0582847
chr3	13023995	13024095	1689376	0	-	0.51	(0.485,0.523]	chr3	176542	15	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	5	184	2	3.12841	3.2518700000000003	3.37533	0.0131144	0.00411887	0.0783696	0.0374687
chr2	11304324	11304423	1088998	0	-	0.373737	(0.36,0.39]	chr2	118747	162	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	148	2	2.60858	3.250465	3.89235	0.0172967	0.0135325	0.0925693	0.0793001
chr8	124660814	124660914	4064265	0	-	0.54	(0.523,0.58]	chr8	387128	415	INTRON	INTRON	MTSS1	ENSG00000170873.19	ENST00000518547.6:ENST00000378017.7:ENST00000325064.9:ENST00000522162.1:ENST00000529463.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	138	2	2.43258	3.249955	4.06733	0.0471238	0.00192956	0.143232	0.0224824
chr8	22374630	22374730	3770094	0	+	0.54	(0.523,0.58]	chr8	362721	65	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	4	150	2	2.85171	3.24983	3.64795	0.032571	0.00180827	0.122289	0.0215456
chr2	36550064	36550161	759601	0	+	0.484536	(0.45,0.485]	chr2	88071	15	UTR3	UTR3:EXON_MRNA	CRIM1	ENSG00000150938.10	ENST00000280527.7	protein_coding	protein_coding	protein_coding	protein_coding	3	114	2	3.09489	3.249365	3.40384	0.027533	0.00827989	0.112782	0.0596839
chr7	105376350	105376450	3667862	0	-	0.47	(0.45,0.485]	chr7	353743	694	INTRON	INTRON	SRPK2	ENSG00000135250.17	ENST00000393651.8:ENST00000482897.5:ENST00000460391.5:ENST00000462282.5:ENST00000465112.5:ENST00000482862.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	114	2	3.09489	3.249365	3.40384	0.027533	0.00827989	0.112782	0.0596839
chr9	14836758	14836858	4280082	0	-	0.52	(0.485,0.523]	chr9	408973	114	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	170	2	2.38262	3.247265	4.11191	0.0154827	0.0075144	0.0871284	0.0576451
chr20	349062	349148	7414009	0	+	0.523256	(0.523,0.58]	chr20	772229	3	SS3_PROX	SS3_PROX:INTRON	NRSN2	ENSG00000125841.13	ENST00000609179.5:ENST00000492242.5:ENST00000382291.7:ENST00000609504.5:ENST00000382285.7:ENST00000608467.5:ENST00000470439.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	1.91169	3.246135	4.58058	0.0860403	0.0659513	0.189025	0.181766
chr1	52913603	52913696	485566	0	-	0.430108	(0.419,0.45]	chr1	57722	3	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ECHDC2	ENSG00000121310.17	ENST00000536120.5:ENST00000371522.9:ENST00000460612.5:ENST00000371520.5:ENST00000358358.9:ENST00000476477.6:ENST00000479593.5:ENST00000467988.2:ENST00000487851.5:ENST00000488268.5:ENST00000544365.5:ENST00000495920.5:ENST00000544531.5:ENST00000480312.6:ENST00000542552.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	93	2	3.13761	3.245795	3.35398	0.0472779	0.0139289	0.143504	0.0824192
chr9	14838054	14838154	4280095	0	-	0.33	(0.29,0.33]	chr9	408973	127	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	117	2	2.92912	3.245075	3.56103	0.0273366	0.00731654	0.112372	0.0550721
chr16	87360964	87361062	6654784	0	-	0.571429	(0.523,0.58]	chr16	665713	2	INTRON	INTRON	FBXO31	ENSG00000103264.18	ENST00000311635.12:ENST00000565593.1:ENST00000618298.6:ENST00000636077.1:ENST00000561664.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	197	2	2.29316	3.2443600000000004	4.19556	0.0144436	0.00646345	0.0833845	0.0531182
chr8	140530045	140530144	4088546	0	-	0.363636	(0.36,0.39]	chr8	388514	100	UTR3	UTR3:EXON_MRNA	AGO2	ENSG00000123908.12	ENST00000220592.10	protein_coding	protein_coding	protein_coding	protein_coding	3	120	2	3.16425	3.243525	3.3228	0.0430514	0.00534106	0.138389	0.0447342
chr10	103699412	103699512	4757094	0	-	0.51	(0.485,0.523]	chr10	454791	59	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	83	2	3.13862	3.24337	3.34812	0.0398026	0.0117752	0.133884	0.0743709
chr2	86040200	86040291	1212034	0	-	0.516484	(0.485,0.523]	chr2	130490	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	POLR1A	ENSG00000068654.17	ENST00000263857.11:ENST00000409681.1:ENST00000462078.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	82	2	2.74113	3.2431099999999997	3.74509	0.0719691	0.0045454	0.168159	0.0401487
chr6	131871669	131871769	3008675	0	+	0.42	(0.419,0.45]	chr6	294249	2	SS3_PROX	SS3_PROX:INTRON	ENPP1	ENSG00000197594.14	ENST00000647893.1:ENST00000513998.5:ENST00000650437.1:ENST00000459624.1:ENST00000647981.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	92	2	2.68635	3.2426399999999997	3.79893	0.0876314	0.00509983	0.183437	0.0433857
chr19	47228157	47228244	7392362	0	-	0.862069	(0.58,1]	chr19	768101	1	CDS	CDS:EXON_MRNA:INTRON	BBC3	ENSG00000105327.18	ENST00000449228.5:ENST00000300880.11:ENST00000341983.8:ENST00000439096.3	protein_coding	protein_coding	protein_coding	protein_coding	3	99	2	2.76261	3.24202	3.72143	0.0297581	0.00366718	0.116461	0.0346803
chr17	56891499	56891599	6931112	0	-	0.61	(0.58,1]	chr17	706266	37	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000573108.1:ENST00000537230.3:ENST00000572021.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	71	2	2.87471	3.24139	3.60807	0.0495478	0.00495688	0.146562	0.0425347
chr19	38667337	38667437	7258037	0	+	0.48	(0.45,0.485]	chr19	743980	187	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	116	2	2.25612	3.24115	4.22618	0.0844869	0.00140627	0.181766	0.0180646
chr16	67967648	67967745	6610228	0	-	0.536082	(0.523,0.58]	chr16	661575	9	INTRON	INTRON	SLC12A4	ENSG00000124067.17	ENST00000422611.6:ENST00000316341.8:ENST00000572037.5:ENST00000570802.5:ENST00000576616.5:ENST00000573023.6:ENST00000576377.1:ENST00000571299.5:ENST00000572010.5:ENST00000576462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	88	2	3.03457	3.241135	3.4477	0.0242383	0.0231444	0.109883	0.106588
chr16	46902379	46902478	6442607	0	+	0.575758	(0.523,0.58]	chr16	639007	12	INTRON	INTRON	GPT2	ENSG00000166123.14	ENST00000340124.9:ENST00000562132.5:ENST00000440783.2	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	3.16507	3.24113	3.31719	0.0382777	0.0124719	0.131324	0.0765738
chr16	85422422	85422522	6517295	0	+	0.71	(0.58,1]	chr16	646391	631	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.18715	3.2408449999999998	4.29454	0.0781652	0.0305531	0.175203	0.126768
chr11	2695395	2695495	4972265	0	-	0.43	(0.419,0.45]	chr11	481197	872	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	5	74	2	1.72648	3.24069	4.7549	0.0888907	0.0715438	0.198817	0.183874
chr3	48087772	48087872	1765943	0	-	0.51	(0.485,0.523]	chr3	182011	715	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	4	151	2	3.04951	3.24048	3.43145	0.0232802	0.00331271	0.103669	0.0324671
chr6	128135162	128135262	3253305	0	-	0.36	(0.33,0.36]	chr6	315160	448	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000531050.5:ENST00000524534.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	86	2	2.75754	3.2397299999999998	3.72192	0.0735337	0.00550077	0.17026	0.0454065
chr2	222913923	222914023	1038240	0	+	0.34	(0.33,0.36]	chr2	113229	23	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000542810.1:ENST00000540115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	233	2	3.0961	3.23944	3.38278	0.0165879	0.00245542	0.0884699	0.0265092
chr8	8352404	8352504	3934130	0	-	0.48	(0.45,0.485]	chr8	376133	124	INTRON	INTRON	PRAG1	ENSG00000275342.5	ENST00000615670.5:ENST00000622241.1	protein_coding	protein_coding	protein_coding	protein_coding	2	84	2	2.90749	3.239135	3.57078	0.0588897	0.00740503	0.15607	0.0553519
chr19	44946075	44946175	7269152	0	+	0.53	(0.523,0.58]	chr19	746442	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	APOC4-APOC2:APOC2	ENSG00000224916.9:ENSG00000234906.11	ENST00000585685.5:ENST00000589057.5:ENST00000592257.5:ENST00000252490.7:ENST00000591597.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	190	2	2.87312	3.239115	3.60511	0.00864084	0.00782689	0.0623824	0.0574276
chr21	33236347	33236447	7609132	0	+	0.53	(0.523,0.58]	chr21	794612	54	INTRON	INTRON	IFNAR2	ENSG00000159110.21	ENST00000683941.1:ENST00000382264.7:ENST00000342136.9:ENST00000404220.7:ENST00000420068.1:ENST00000342101.7:ENST00000382238.6:ENST00000413881.5:ENST00000443073.5:ENST00000447980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	82	2	3.0773	3.2388000000000003	3.4003	0.0438724	0.0103016	0.139792	0.0678983
chr20	21242950	21243049	7448945	0	+	0.50505	(0.485,0.523]	chr20	775009	98	INTRON	INTRON	KIZ	ENSG00000088970.16	ENST00000619574.4:ENST00000620891.4:ENST00000611685.4:ENST00000616848.4:ENST00000619189.5:ENST00000616679.4:ENST00000619179.4:ENST00000621366.1:ENST00000451772.5:ENST00000419359.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	85	2	3.17158	3.237115	3.30265	0.0306642	0.017456	0.119264	0.0928044
chr21	45485673	45485771	7631140	0	+	0.653061	(0.58,1]	chr21	797730	25	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.07697	3.2365850000000003	4.3962	0.0924023	0.0250928	0.188571	0.114418
chr2	121479717	121479817	1262523	0	-	0.41	(0.39,0.419]	chr2	136083	94	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	199	2	2.72475	3.2363049999999998	3.74786	0.03375	0.00182261	0.124319	0.021657
chr7	22123219	22123318	3547821	0	-	0.545455	(0.523,0.58]	chr7	342838	3	INTRON	INTRON	RAPGEF5	ENSG00000136237.19	ENST00000665637.1:ENST00000401957.6:ENST00000344041.10:ENST00000620335.4	protein_coding	protein_coding	protein_coding	protein_coding	3	113	2	2.78812	3.236025	3.68393	0.0162298	0.0160129	0.0894586	0.0873195
chr16	52474335	52474434	6589131	0	-	0.484848	(0.45,0.485]	chr16	658695	54	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	113	2	3.06778	3.23581	3.40384	0.027533	0.00883868	0.112782	0.0617274
chr5	109800797	109800896	2504497	0	+	0.343434	(0.33,0.36]	chr5	248897	62	INTRON	INTRON	MAN2A1	ENSG00000112893.10	ENST00000261483.5:ENST00000502261.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	117	2	2.40149	3.2354249999999998	4.06936	0.0692604	0.00231927	0.166728	0.0255753
chr21	44872753	44872853	7678570	0	-	0.61	(0.58,1]	chr21	802775	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	519	2	3.1606	3.235295	3.30999	0.00361358	0.00180937	0.0386078	0.02155
chr19	46978191	46978291	7275355	0	+	0.52	(0.485,0.523]	chr19	747275	404	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1:ENST00000404338.8:ENST00000614079.1:ENST00000595822.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	111	2	2.43796	3.23419	4.03042	0.062523	0.00217615	0.160305	0.0243911
chr16	81546181	81546281	6508755	0	+	0.54	(0.523,0.58]	chr16	645911	503	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	3.10715	3.233245	3.35934	0.0418959	0.0113252	0.136901	0.071894
chr8	128032970	128033069	3920209	0	+	0.545455	(0.523,0.58]	chr8	374311	3	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000657211.1:ENST00000653845.1:ENST00000651587.1:ENST00000692980.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000662410.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000667714.1:ENST00000654105.1:ENST00000664995.1:ENST00000670714.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000668123.1:ENST00000666776.1:ENST00000659912.1:ENST00000670532.1:ENST00000523068.2:ENST00000671088.1:ENST00000663461.1:ENST00000513868.6:ENST00000692433.1:ENST00000523190.7:ENST00000685606.1:ENST00000690788.1:ENST00000685634.1:ENST00000653990.1:ENST00000655783.1:ENST00000656411.1:ENST00000664742.1:ENST00000655099.1:ENST00000662709.1:ENST00000512617.7:ENST00000660122.1:ENST00000666452.1:ENST00000659666.1:ENST00000659892.1:ENST00000521600.5:ENST00000522875.5:ENST00000653497.1:ENST00000668098.1:ENST00000659106.1:ENST00000666147.1:ENST00000658350.1:ENST00000656999.1:ENST00000664610.1:ENST00000671092.1:ENST00000653853.1:ENST00000652492.1	lncRNA	lncRNA	lncRNA	lncRNA	5	154	2	3.09054	3.23324	3.37594	0.0272868	0.00310263	0.112327	0.0311614
chr6	24303342	24303442	3109782	0	-	0.56	(0.523,0.58]	chr6	301440	9	INTRON	INTRON	DCDC2	ENSG00000146038.12	ENST00000378454.8	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.12522	3.2332	4.34118	0.0984283	0.0372357	0.192982	0.139793
chr19	942319	942419	7185269	0	+	0.76	(0.58,1]	chr19	730741	92	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	104	2	2.52834	3.233035	3.93773	0.0249502	0.00708574	0.114418	0.0558168
chr7	130909416	130909515	3711070	0	-	0.59596	(0.58,1]	chr7	356708	247	INTRON	INTRON	ENSG00000226380	ENSG00000226380.9	ENST00000432045.6:ENST00000447307.5:ENST00000418546.1	lncRNA	lncRNA	lncRNA	lncRNA	6	180	2	3.00252	3.233025	3.46353	0.0190891	7.32185e-4	0.0952138	0.0114112
chr11	378520	378619	4784085	0	+	0.626263	(0.58,1]	chr11	457781	8	INTRON	INTRON	B4GALNT4	ENSG00000182272.12	ENST00000329962.11	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	2.97713	3.23301	3.48889	0.0226795	0.016972	0.108193	0.0889149
chr2	235503541	235503641	1062631	0	+	0.35	(0.33,0.36]	chr2	115651	83	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	94	2	2.93873	3.232135	3.52554	0.0305837	0.0229449	0.126768	0.102982
chr20	37756391	37756491	7473815	0	+	0.52	(0.485,0.523]	chr20	778282	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CTNNBL1	ENSG00000132792.19	ENST00000405275.6:ENST00000621317.4:ENST00000361383.11:ENST00000447935.3:ENST00000628103.2:ENST00000373473.5:ENST00000473857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	109	2	3.08589	3.23203	3.37817	0.0271129	0.00799823	0.112113	0.0580954
chr12	57163083	57163183	5240761	0	+	0.63	(0.58,1]	chr12	510246	1	SS5_PROX	SS5_PROX:INTRON	LRP1	ENSG00000123384.14	ENST00000243077.8	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	3.20215	3.23169	3.26123	0.0257049	0.0136092	0.109543	0.0811697
chr3	172091281	172091381	1627980	0	+	0.29	[0,0.29]	chr3	170535	440	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	136	2	2.79972	3.23142	3.66312	0.0287958	0.00157037	0.116006	0.0195
chr1	44245851	44245950	459631	0	-	0.474747	(0.45,0.485]	chr1	55307	34	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	113	2	3.12123	3.23117	3.34111	0.0428769	0.00449358	0.137868	0.0399491
chr17	77468856	77468955	6805067	0	+	0.575758	(0.523,0.58]	chr17	686810	19	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	134	2	2.22701	3.231105	4.2352	0.0650367	0.00122149	0.162385	0.0163228
chr16	84975652	84975750	6650976	0	-	0.489796	(0.485,0.523]	chr16	665386	16	UTR3	UTR3:EXON_MRNA	ZDHHC7	ENSG00000153786.13	ENST00000313732.9:ENST00000344861.9	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	155	2	2.10765	3.2306999999999997	4.35375	0.0659585	9.01016e-4	0.162385	0.0132389
chr21	37083158	37083256	7617510	0	+	0.377551	(0.36,0.39]	chr21	795681	17	UTR5	UTR5:EXON_MRNA:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2:ENST00000399017.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	166	2	3.15995	3.2304899999999996	3.30103	0.0225967	0.00563261	0.102982	0.0462941
chr17	72538767	72538867	6963698	0	-	0.5	(0.485,0.523]	chr17	710389	43	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	7	82	2	1.61479	3.2304500000000003	4.84611	0.0667423	0.0608067	0.191125	0.158506
chr16	18906099	18906199	6560870	0	-	0.39	(0.36,0.39]	chr16	654209	57	INTRON	INTRON	SMG1	ENSG00000157106.18	ENST00000446231.7:ENST00000532700.6:ENST00000569122.1:ENST00000563836.1	protein_coding	protein_coding	protein_coding	protein_coding	3	119	2	3.1377	3.23025	3.3228	0.0447786	0.00534106	0.140478	0.0447342
chr10	79221472	79221572	4533576	0	+	0.66	(0.58,1]	chr10	432457	48	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	4	132	2	3.20815	3.23014	3.25213	0.0128255	0.00405239	0.0770824	0.0371518
chr11	65425568	65425668	4871597	0	+	0.4	(0.39,0.419]	chr11	468177	29	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000693290.1:ENST00000616315.2	lncRNA	lncRNA	lncRNA	lncRNA	38	1467	2	2.74643	3.229845	3.71326	0.00292825	0.00273395	0.0332188	0.0298918
chrX	9567142	9567242	7843471	0	+	0.51	(0.485,0.523]	chrX	822423	62	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	81	2	2.77877	3.2296750000000003	3.68058	0.0682166	0.0053378	0.164526	0.0447225
chr13	75459174	75459274	5727776	0	-	0.46	(0.45,0.485]	chr13	561722	820	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	4	135	2	2.96383	3.22905	3.49427	0.0237694	0.00672691	0.105296	0.0519464
chr20	51597412	51597512	7577648	0	-	0.26	[0,0.29]	chr20	791738	10	UTR3	UTR3:EXON_MRNA	ATP9A	ENSG00000054793.14	ENST00000338821.6:ENST00000311637.9	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.00598	3.228805	4.45163	0.104328	0.0278965	0.19835	0.12105
chr7	47380812	47380911	3587600	0	-	0.59596	(0.58,1]	chr7	346036	108	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	114	2	2.70293	3.227855	3.75278	0.01024	0.00981512	0.0684871	0.0664239
chr16	89298767	89298867	6659793	0	-	0.47	(0.45,0.485]	chr16	666648	66	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	163	2	3.19866	3.22762	3.25658	0.0347918	0.00256208	0.126561	0.0273911
chr22	28466570	28466670	7779696	0	-	0.38	(0.36,0.39]	chr22	815741	236	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	2	88	2	2.73901	3.22759	3.71617	0.0786198	0.00589796	0.175203	0.0477093
chr19	953291	953391	7185379	0	+	0.65	(0.58,1]	chr19	730741	202	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	63	2	1.87437	3.22731	4.58025	0.0953385	0.0172566	0.189038	0.0923809
chr19	35003824	35003924	7244898	0	+	0.5	(0.485,0.523]	chr19	742073	6	INTRON	INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	98	2	2.67159	3.22677	3.78195	0.0478226	0.0136284	0.1588	0.0797406
chr3	188266451	188266551	1652923	0	+	0.59	(0.58,1]	chr3	173754	259	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	2.56085	3.226715	3.89258	0.0803939	0.00229214	0.177452	0.0253494
chr16	81625394	81625493	6509551	0	+	0.585859	(0.58,1]	chr16	645926	33	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	3.19823	3.225775	3.25332	0.0287301	0.0120565	0.115888	0.0754623
chr2	239348680	239348780	1392197	0	-	0.65	(0.58,1]	chr2	148752	242	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	72	2	3.19823	3.225775	3.25332	0.0287301	0.0120565	0.115888	0.0754623
chr7	47477804	47477904	3588586	0	-	0.63	(0.58,1]	chr7	346123	247	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	3.19823	3.225775	3.25332	0.0287301	0.0120565	0.115888	0.0754623
chr2	239962384	239962484	1393440	0	-	0.59	(0.58,1]	chr2	148811	8	INTRON	INTRON	NDUFA10	ENSG00000130414.13	ENST00000419408.5:ENST00000679183.1:ENST00000677057.1:ENST00000676782.1:ENST00000677407.1:ENST00000676929.1:ENST00000678455.1:ENST00000252711.7:ENST00000677692.1:ENST00000476216.6:ENST00000677395.1:ENST00000678188.1:ENST00000677979.1:ENST00000678914.1:ENST00000678562.1:ENST00000678832.1:ENST00000677155.1:ENST00000677764.1:ENST00000677294.1:ENST00000678468.1:ENST00000677324.1:ENST00000678158.1:ENST00000676491.1:ENST00000471378.1:ENST00000677114.1:ENST00000404554.5:ENST00000620965.5:ENST00000485344.6:ENST00000679308.1:ENST00000677567.1:ENST00000679158.1:ENST00000443626.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	71	2	2.6577	3.225025	3.79235	0.0695799	0.00302484	0.167028	0.0305643
chr16	81551579	81551679	6508809	0	+	0.52	(0.485,0.523]	chr16	645911	557	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	87	2	3.02337	3.224885	3.4264	0.025039	0.023933	0.111785	0.10758
chr22	32820694	32820794	7717816	0	+	0.49	(0.485,0.523]	chr22	807776	182	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	2	87	2	3.02337	3.224885	3.4264	0.025039	0.023933	0.111785	0.10758
chr16	81545281	81545381	6508746	0	+	0.57	(0.523,0.58]	chr16	645911	494	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	3.22074	3.22487	3.229	0.0350559	0.0152072	0.12704	0.0861813
chr4	151122607	151122707	2350478	0	-	0.5	(0.485,0.523]	chr4	234980	4	SS3_PROX	SS3_PROX:INTRON	SH3D19	ENSG00000109686.19	ENST00000409598.8:ENST00000604030.7:ENST00000304527.8:ENST00000409252.6:ENST00000514152.5:ENST00000478503.6:ENST00000652233.1:ENST00000427414.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	84	2	3.17158	3.22408	3.27658	0.0319818	0.017456	0.121593	0.0928044
chr20	31667846	31667945	7542480	0	-	0.474747	(0.45,0.485]	chr20	787260	3	INTRON	INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	63	2	1.94922	3.22354	4.49786	0.101311	0.0504136	0.196131	0.162679
chr10	103835618	103835718	4758461	0	-	0.63	(0.58,1]	chr10	454819	339	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	3	96	2	2.58616	3.223045	3.85993	0.0406424	0.00251049	0.135868	0.026941
chr14	68895233	68895331	5999291	0	-	0.581633	(0.58,1]	chr14	588704	11	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	74	2	3.09402	3.2224399999999997	3.35086	0.0218816	0.0174733	0.101015	0.0928044
chr10	28559533	28559633	4469680	0	+	0.43	(0.419,0.45]	chr10	427649	211	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	90	2	2.7886	3.2219300000000004	3.65526	0.0766427	0.00712959	0.174882	0.0541241
chr1	9295393	9295493	19608	0	+	0.64	(0.58,1]	chr1	2205	4	INTRON	INTRON	SPSB1	ENSG00000171621.14	ENST00000328089.11:ENST00000450402.1	protein_coding	protein_coding	protein_coding	protein_coding	2	70	2	2.87471	3.22146	3.56821	0.0495478	0.00550024	0.146562	0.0454065
chr14	103104838	103104914	5921865	0	+	0.697368	(0.58,1]	chr14	579216	1	EXON_MRNA	EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	183	2	2.70179	3.221425	3.74106	0.00689695	0.00429231	0.0528236	0.042386
chr11	2697394	2697494	4972285	0	-	0.34	(0.33,0.36]	chr11	481197	892	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	5	160	2	2.98175	3.221015	3.46028	0.025517	0.00491522	0.108946	0.0422938
chr16	50624587	50624686	6452175	0	+	0.636364	(0.58,1]	chr16	639918	25	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	10	299	2	2.84042	3.2206349999999997	3.60085	0.0117592	3.42128e-4	0.0737098	0.00668751
chr14	54790334	54790434	5821700	0	+	0.43	(0.419,0.45]	chr14	569165	15	UTR3	UTR3:EXON_MRNA	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9	protein_coding	protein_coding	protein_coding	protein_coding	8	326	2	2.79651	3.2203049999999998	3.6441	0.00774576	0.00699539	0.0588577	0.0535458
chr16	81547081	81547181	6508764	0	+	0.59	(0.58,1]	chr16	645911	512	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	5	153	2	3.20815	3.2199099999999996	3.23167	0.0128255	0.00227861	0.0770824	0.025238
chr6	36109144	36109243	2905128	0	+	0.565657	(0.523,0.58]	chr6	284964	8	UTR3	UTR3:EXON_MRNA	MAPK14	ENSG00000112062.11	ENST00000229795.7:ENST00000229794.9	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	3.16507	3.21942	3.27377	0.0382777	0.0137592	0.131324	0.0814923
chr20	43516371	43516468	7480679	0	+	0.412371	(0.39,0.419]	chr20	779290	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	L3MBTL1	ENSG00000185513.17	ENST00000649501.1:ENST00000439769.2:ENST00000649084.1:ENST00000418998.7:ENST00000427442.8:ENST00000649917.1:ENST00000647860.1:ENST00000649698.1:ENST00000422861.3:ENST00000473289.2:ENST00000648786.1:ENST00000648715.1:ENST00000648570.1:ENST00000650071.1:ENST00000650484.1:ENST00000648421.1:ENST00000373135.8:ENST00000373134.5:ENST00000430781.7:ENST00000457824.5:ENST00000473981.2:ENST00000647827.1:ENST00000445228.6:ENST00000648774.1:ENST00000497347.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	88	2	3.01865	3.2192100000000003	3.41977	0.0536576	0.0116434	0.150594	0.0736274
chr11	96167706	96167806	5111813	0	-	0.28	[0,0.29]	chr11	496566	738	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	1.98475	3.21819	4.45163	0.0820128	0.0278965	0.179396	0.12105
chr11	57499934	57500020	5038772	0	-	0.523256	(0.523,0.58]	chr11	488207	4	INTRON	INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	134	2	1.91424	3.217975	4.52171	0.102931	5.43906e-4	0.197541	0.00927567
chr22	48751932	48752031	7751789	0	+	0.666667	(0.58,1]	chr22	812294	1	INTRON	INTRON	TAFA5	ENSG00000219438.9	ENST00000336769.9	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.0383	3.21725	4.3962	0.0978534	0.0250928	0.191981	0.114418
chr15	24983923	24984022	6063684	0	+	0.454545	(0.45,0.485]	chr15	595387	16	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	5	187	2	3.04319	3.21714	3.39109	0.0137626	0.00550417	0.080169	0.0454163
chr3	30635146	30635246	1433378	0	+	0.37	(0.36,0.39]	chr3	153006	19	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4:ENST00000673250.1:ENST00000672866.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	88	2	2.62895	3.21564	3.80233	0.0909522	0.00480386	0.187477	0.0416515
chr22	38821915	38822014	7812880	0	-	0.606061	(0.58,1]	chr22	819285	36	UTR3	UTR3:EXON_MRNA	NPTXR	ENSG00000221890.6	ENST00000333039.4	protein_coding	protein_coding	protein_coding	protein_coding	3	105	2	3.08073	3.21562	3.35051	0.0164389	0.00953058	0.0877632	0.0650078
chr19	34390495	34390595	7243255	0	+	0.53	(0.523,0.58]	chr19	741718	85	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	164	2	2.04088	3.215555	4.39023	0.040201	0.00448009	0.144962	0.0436138
chr8	22560347	22560444	3771896	0	+	0.536082	(0.523,0.58]	chr8	362926	18	INTRON	INTRON	SORBS3	ENSG00000120896.14	ENST00000240123.12:ENST00000517500.5:ENST00000517535.5:ENST00000523402.5:ENST00000520563.3:ENST00000524057.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	149	2	2.83964	3.214455	3.58927	0.0238645	0.00656975	0.105687	0.0510026
chr11	72724139	72724238	5070168	0	-	0.515152	(0.485,0.523]	chr11	493450	19	INTRON	INTRON	ARAP1	ENSG00000186635.15	ENST00000359373.9:ENST00000393609.8	protein_coding	protein_coding	protein_coding	protein_coding	2	80	2	2.88614	3.21416	3.54218	0.0583792	0.00747698	0.155373	0.0555092
chr3	9414303	9414403	1402247	0	+	0.37	(0.36,0.39]	chr3	150072	160	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	118	2	2.95558	3.21337	3.47116	0.0269033	0.0126857	0.112113	0.0772402
chr6	128053265	128053365	3252476	0	-	0.57	(0.523,0.58]	chr6	315116	436	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000415046.6:ENST00000524481.5:ENST00000531050.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	271	2	3.17693	3.212795	3.24866	0.0114706	0.00187701	0.0724928	0.0219877
chr7	75918801	75918901	3396641	0	+	0.59	(0.58,1]	chr7	328047	1	SS5_PROX	SS5_PROX:INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	117	2	2.44972	3.212755	3.97579	0.0184955	0.00655968	0.096816	0.0536645
chr5	14696498	14696596	2387653	0	+	0.357143	(0.33,0.36]	chr5	238863	36	UTR3	UTR3:EXON_MRNA	OTULIN	ENSG00000154124.5	ENST00000284274.5	protein_coding	protein_coding	protein_coding	protein_coding	4	141	2	1.92664	3.21219	4.49774	0.104919	7.43871e-4	0.198927	0.0115713
chr2	3459406	3459495	711027	0	+	0.617977	(0.58,1]	chr2	83176	6	INTRON	INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000479955.5:ENST00000497597.5:ENST00000473348.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	70	2	3.02751	3.212135	3.39676	0.0385189	0.0085026	0.131324	0.0608246
chr8	18997780	18997880	3951978	0	-	0.54	(0.523,0.58]	chr8	377308	575	INTRON	INTRON	PSD3	ENSG00000156011.18	ENST00000327040.13:ENST00000440756.4:ENST00000521475.1:ENST00000521841.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	80	2	2.98385	3.21199	3.44013	0.0505794	0.00938609	0.148456	0.064735
chr1	1272652	1272752	380719	0	-	0.61	(0.58,1]	chr1	42929	4	SS5_PROX	SS5_PROX:INTRON	UBE2J2	ENSG00000160087.21	ENST00000450390.6:ENST00000349431.11:ENST00000347370.6:ENST00000400929.6:ENST00000464036.5:ENST00000360466.6:ENST00000400930.8:ENST00000473215.5:ENST00000435198.5:ENST00000509720.5:ENST00000491779.5:ENST00000466752.5:ENST00000503294.5:ENST00000477894.5:ENST00000422076.5:ENST00000502382.1:ENST00000461142.3:ENST00000488418.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	93	2	3.10233	3.211965	3.3216	0.0230709	0.00607723	0.102982	0.0487928
chr19	944813	944912	7185294	0	+	0.606061	(0.58,1]	chr19	730741	117	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	137	2	3.00436	3.21145	3.41854	0.00841183	0.00785951	0.0616845	0.0576181
chr19	35003524	35003624	7244895	0	+	0.64	(0.58,1]	chr19	742073	3	INTRON	INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	127	2	2.1424	3.21098	4.27956	0.0374477	0.00349053	0.139793	0.0379065
chrX	133844368	133844468	8114611	0	-	0.38	(0.36,0.39]	chrX	845529	94	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	211	2	2.46341	3.21096	3.95851	0.066299	5.54088e-4	0.162385	0.00942349
chr20	3192512	3192607	7515119	0	-	0.463158	(0.45,0.485]	chr20	784523	3	INTRON	INTRON	DDRGK1	ENSG00000198171.13	ENST00000354488.8:ENST00000470203.1:ENST00000380201.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	111	2	3.14934	3.210445	3.27155	0.0410767	0.00535743	0.136301	0.0448556
chr2	235867573	235867673	1066288	0	+	0.54	(0.523,0.58]	chr2	115724	145	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000336665.9:ENST00000635100.1:ENST00000409538.5:ENST00000614409.4:ENST00000428334.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	112	2	2.71726	3.2104299999999997	3.7036	0.0188054	0.0156851	0.0980631	0.0852152
chr6	128515729	128515829	3257128	0	-	0.41	(0.39,0.419]	chr6	315230	235	INTRON	INTRON	PTPRK	ENSG00000152894.15	ENST00000368226.9:ENST00000368213.9:ENST00000532331.5:ENST00000368210.7:ENST00000368215.7:ENST00000368207.7:ENST00000524481.5:ENST00000524534.5:ENST00000525459.1:ENST00000392449.4:ENST00000532751.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	239	2	2.17282	3.2103	4.24778	0.0193705	0.00745132	0.0994526	0.0576451
chr2	134451833	134451933	898766	0	+	0.35	(0.33,0.36]	chr2	101298	31	UTR3	UTR3:EXON_MRNA	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	5	158	2	2.9363	3.20933	3.48236	0.0246193	0.00551902	0.10715	0.045536600000000003
chrX	1396426	1396500	7830124	0	+	0.594595	(0.58,1]	chrX	822049	1	EXON_LNCRNA	EXON_LNCRNA	LINC00106	ENSG00000236871.7	ENST00000434938.7	lncRNA	lncRNA	lncRNA	lncRNA	6	174	2	2.9844	3.2089600000000003	3.43352	0.00815854	0.00311896	0.0605492	0.0311915
chr21	38808093	38808178	7620623	0	+	0.541176	(0.523,0.58]	chr21	796139	1	UTR5	UTR5:EXON_MRNA:INTRON	ETS2	ENSG00000157557.13	ENST00000360214.8:ENST00000665212.1:ENST00000667466.1:ENST00000360938.8:ENST00000432278.5:ENST00000666778.1:ENST00000653642.1	protein_coding	protein_coding	protein_coding	protein_coding	6	218	2	2.55489	3.20885	3.86281	0.0124509	0.00531301	0.0765738	0.047841
chr5	34192109	34192209	2634320	0	-	0.6	(0.58,1]	chr5	261375	27	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000507274.1:ENST00000508395.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	70	2	3.06331	3.2069099999999997	3.35051	0.036259	0.00953058	0.127941	0.0650078
chr7	96220853	96220953	3642502	0	-	0.43	(0.419,0.45]	chr7	350731	7	INTRON	INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000472162.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	89	2	2.88408	3.206565	3.52905	0.0674152	0.00949141	0.163486	0.0650078
chr16	29269214	29269314	6433529	0	+	0.54	(0.523,0.58]	chr16	636745	171	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	4	164	2	2.88829	3.2060750000000002	3.52386	0.0126903	0.010042	0.0772455	0.0677174
chr16	81549480	81549580	6508788	0	+	0.6	(0.58,1]	chr16	645911	536	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	8	249	2	3.18914	3.20599	3.22284	0.00630246	0.00170421	0.0524017	0.0205925
chr2	233289187	233289270	1059541	0	+	0.373494	(0.36,0.39]	chr2	115300	4	INTRON	INTRON	ATG16L1	ENSG00000085978.22	ENST00000347464.9:ENST00000373525.9:ENST00000392021.7:ENST00000392017.9:ENST00000479942.5:ENST00000474148.5:ENST00000392020.8:ENST00000392018.1:ENST00000498620.5:ENST00000464645.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	120	2	2.90564	3.2054650000000002	3.50529	0.0625454	0.00339246	0.160305	0.0329545
chr20	37507027	37507125	7559838	0	-	0.5	(0.485,0.523]	chr20	789576	32	INTRON	INTRON	BLCAP	ENSG00000166619.15	ENST00000411780.1:ENST00000467603.1	protein_coding	processed_transcript	protein_coding	processed_transcript	5	147	2	2.7247	3.20543	3.68616	0.0161133	0.00828205	0.0870535	0.0596969
chr10	79169623	79169723	4533053	0	+	0.48	(0.45,0.485]	chr10	432438	71	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	2.80521	3.205075	3.60494	0.0681544	0.00682726	0.164505	0.0525149
chr11	65427066	65427166	4871612	0	+	0.52	(0.485,0.523]	chr11	468177	44	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	53	2034	2	3.12324	3.20426	3.28528	0.0037397	7.71513e-4	0.0393841	0.0118336
chr7	105012292	105012389	3665156	0	-	0.309278	(0.29,0.33]	chr7	353618	7	EXON_LNCRNA	EXON_LNCRNA:INTRON	LINC01004	ENSG00000228393.5	ENST00000450686.1:ENST00000655204.2:ENST00000445184.1:ENST00000689371.1:ENST00000690819.1:ENST00000688692.1:ENST00000693045.1:ENST00000684783.1:ENST00000685115.1:ENST00000688127.1:ENST00000693130.1:ENST00000687259.1:ENST00000689586.1:ENST00000687408.1:ENST00000688097.1:ENST00000687900.1:ENST00000684829.1	lncRNA	lncRNA	lncRNA	lncRNA	3	118	2	3.03627	3.204175	3.37208	0.0227207	0.0113763	0.102982	0.0721226
chr10	102646819	102646918	4576492	0	+	0.616162	(0.58,1]	chr10	437280	6	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	111	2	2.86736	3.20398	3.5406	0.0154024	0.0063518	0.0849828	0.0501889
chr2	235511034	235511134	1062706	0	+	0.52	(0.485,0.523]	chr2	115651	158	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	179	2	3.03119	3.20326	3.37533	0.0131144	0.00531215	0.0783696	0.0446153
chr6	75638592	75638691	2940527	0	+	0.171717	[0,0.29]	chr6	289313	34	INTRON	INTRON	SENP6	ENSG00000112701.18	ENST00000370010.6:ENST00000447266.7:ENST00000327284.12:ENST00000483859.6:ENST00000424947.6	protein_coding	protein_coding	protein_coding	protein_coding	4	56	2	1.78827	3.20288	4.61749	0.0651283	0.061376	0.186892	0.158506
chr22	24103948	24104047	7695404	0	+	0.50505	(0.485,0.523]	chr22	805529	7	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	50	2	1.89919	3.202765	4.50634	0.0939553	0.0679216	0.193274	0.188571
chr12	56597154	56597252	5437624	0	-	0.602041	(0.58,1]	chr12	534676	17	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	5	133	2	2.22106	3.2024600000000003	4.18386	0.0448257	9.90719e-4	0.14054	0.0141138
chr5	146150683	146150780	2784251	0	-	0.515464	(0.485,0.523]	chr5	272991	6	INTRON	INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000508667.5:ENST00000507095.1:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	122	2	2.49197	3.20214	3.91231	0.10114	8.81743e-4	0.196131	0.0129974
chr11	64147152	64147252	5049049	0	-	0.48	(0.45,0.485]	chr11	490257	204	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	110	2	3.17326	3.201885	3.23051	0.0362376	0.00683957	0.127941	0.0525976
chr6	154468338	154468438	3297126	0	-	0.48	(0.45,0.485]	chr6	319119	177	INTRON	INTRON	CNKSR3	ENSG00000153721.19	ENST00000607772.6:ENST00000479339.5	protein_coding	protein_coding	protein_coding	protein_coding	4	133	2	2.74393	3.20183	3.65973	0.0180534	0.0115251	0.0921579	0.0730057
chr12	26529651	26529751	5398520	0	-	0.36	(0.33,0.36]	chr12	528527	340	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	2	87	2	3.13306	3.201675	3.27029	0.0345169	0.0206439	0.126034	0.102713
chr13	112693046	112693145	5652570	0	+	0.393939	(0.39,0.419]	chr13	554894	22	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5	protein_coding	protein_coding	protein_coding	protein_coding	8	296	2	3.08054	3.201025	3.32151	0.0188137	0.00169972	0.0939295	0.0205427
chr13	97362935	97363035	5632220	0	+	0.45	(0.419,0.45]	chr13	553214	49	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000449284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	122	2	2.26275	3.2006300000000003	4.13851	0.091268	0.00222652	0.188067	0.0248148
chrX	133937351	133937451	8115541	0	-	0.36	(0.33,0.36]	chrX	845529	1024	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	195	2	2.79296	3.20058	3.6082	0.0200207	0.00534016	0.0971059	0.0447342
chr21	45477062	45477145	7631041	0	+	0.46988	(0.45,0.485]	chr21	797687	2	SS3_PROX	SS3_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	3	112	2	2.97186	3.20039	3.42892	0.0536124	0.00358671	0.150486	0.0342681
chr8	70380530	70380630	3995020	0	-	0.39	(0.36,0.39]	chr8	382245	834	INTRON	INTRON	NCOA2	ENSG00000140396.13	ENST00000452400.7:ENST00000518287.6:ENST00000520416.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	86	2	2.87382	3.200255	3.52669	0.0653866	0.00914333	0.162385	0.063297
chr11	57499762	57499848	5038770	0	-	0.709302	(0.58,1]	chr11	488207	2	INTRON	INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	71	2	3.19823	3.20019	3.20215	0.0287301	0.0136092	0.115888	0.0811697
chr11	68332272	68332371	4882280	0	+	0.515152	(0.485,0.523]	chr11	470542	191	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	89	2	2.85817	3.19927	3.54037	0.0334631	0.0206875	0.133139	0.0985914
chr21	44873032	44873124	7678573	0	-	0.75	(0.58,1]	chr21	802777	1	SS5_PROX	SS5_PROX:INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	164	2	2.95584	3.198705	3.44157	0.0109932	0.00760198	0.0708586	0.0561937
chr2	239290370	239290470	1391612	0	-	0.5	(0.485,0.523]	chr2	148740	388	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	109	2	2.21906	3.1985	4.17794	0.0861655	0.0014639	0.181978	0.0185482
chr2	138567160	138567258	904551	0	+	0.397959	(0.39,0.419]	chr2	101982	18	INTRON	INTRON	SPOPL	ENSG00000144228.9	ENST00000280098.9:ENST00000420679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	140	2	2.95392	3.1979800000000003	3.44204	0.0284392	0.00777185	0.114979	0.0570951
chr2	237579004	237579098	1388035	0	-	0.319149	(0.29,0.33]	chr2	148326	10	EXON_MRNA	EXON_MRNA:INTRON	RAB17	ENSG00000124839.13	ENST00000392001.6:ENST00000264601.8:ENST00000477149.5:ENST00000409576.1:ENST00000414278.1:ENST00000409822.1:ENST00000411462.5:ENST00000430445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	149	2	2.90643	3.1974099999999996	3.48839	0.0201189	0.00869049	0.0973365	0.0612699
chr16	81633279	81633379	6509630	0	+	0.62	(0.58,1]	chr16	645926	112	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	1.99855	3.197375	4.3962	0.103709	0.0250928	0.197611	0.114418
chr19	47271578	47271678	7276807	0	+	0.62	(0.58,1]	chr19	747462	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CCDC9	ENSG00000105321.14	ENST00000643617.1:ENST00000221922.11	protein_coding	protein_coding	protein_coding	protein_coding	3	97	2	2.78615	3.1971100000000003	3.60807	0.0285184	0.00495688	0.115242	0.0425347
chr6	43051863	43051937	3135551	0	-	0.324324	(0.29,0.33]	chr6	305980	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CUL7	ENSG00000044090.13	ENST00000265348.9:ENST00000690231.1:ENST00000685042.1:ENST00000689256.1:ENST00000674112.2:ENST00000674134.1:ENST00000674100.1:ENST00000686442.1:ENST00000688302.1:ENST00000673753.1:ENST00000687225.1:ENST00000688707.1:ENST00000683493.1:ENST00000683160.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	79	2	3.02123	3.196655	3.37208	0.0461219	0.0113763	0.143055	0.0721226
chr20	3192321	3192416	7515117	0	-	0.557895	(0.523,0.58]	chr20	784523	1	INTRON	INTRON	DDRGK1	ENSG00000198171.13	ENST00000354488.8:ENST00000470203.1:ENST00000380201.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	79	2	2.70025	3.19603	3.69181	0.0763549	0.00510333	0.174544	0.0433857
chr17	7108184	7108272	6847713	0	-	0.636364	(0.58,1]	chr17	693414	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	94	2	2.2895	3.19599	4.10248	0.0665599	0.0012583	0.162495	0.0167083
chr2	235546533	235546633	1063063	0	+	0.57	(0.523,0.58]	chr2	115656	216	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	92	2	2.74768	3.1957199999999997	3.64376	0.0411359	0.0173955	0.147756	0.0901374
chr16	89835022	89835121	6525489	0	+	0.565657	(0.523,0.58]	chr16	647498	59	INTRON	INTRON	SPIRE2	ENSG00000204991.11	ENST00000564878.5:ENST00000378247.8:ENST00000393062.6:ENST00000563972.1:ENST00000566337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	90	2	2.80981	3.195565	3.58132	0.0364868	0.0193579	0.139793	0.0954964
chr8	22369935	22370035	3770047	0	+	0.48	(0.45,0.485]	chr8	362721	18	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	7	230	2	2.85439	3.195035	3.53568	0.0106379	0.00501643	0.0698701	0.0429491
chr6	130868907	130868984	3260223	0	-	0.467532	(0.45,0.485]	chr6	315459	1	INTRON	INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000528282.5:ENST00000531410.5:ENST00000392427.7:ENST00000530757.5:ENST00000368128.6:ENST00000527411.5:ENST00000524581.5:ENST00000525271.5:ENST00000529208.5:ENST00000525193.5:ENST00000527659.5:ENST00000527017.6	protein_coding	protein_coding	protein_coding	protein_coding	3	114	2	2.68615	3.1944850000000002	3.70282	0.0445958	0.00539085	0.140478	0.0450882
chr7	74499102	74499202	3391818	0	+	0.62	(0.58,1]	chr7	327343	446	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	2.7038	3.194215	3.68463	0.0648563	0.00404771	0.162218	0.0371291
chr3	48426611	48426708	1766700	0	-	0.670103	(0.58,1]	chr3	182283	9	INTRON	INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	299	2	3.07659	3.1941800000000002	3.31177	0.00719101	8.648e-4	0.056408	0.012827
chr1	43565202	43565302	107091	0	+	0.6	(0.58,1]	chr1	13192	109	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	69	2	2.9908	3.1937800000000003	3.39676	0.0409591	0.0085026	0.136191	0.0608246
chr14	104778381	104778476	6057673	0	-	0.631579	(0.58,1]	chr14	594698	18	EXON_MRNA	EXON_MRNA:INTRON	AKT1	ENSG00000142208.18	ENST00000349310.7:ENST00000407796.7:ENST00000649815.2:ENST00000554581.5:ENST00000402615.6:ENST00000557552.1:ENST00000683722.1:ENST00000555528.5:ENST00000554826.2:ENST00000553797.2:ENST00000610370.2:ENST00000554848.5:ENST00000682269.1:ENST00000555380.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	69	2	2.9908	3.1937800000000003	3.39676	0.0409591	0.0085026	0.136191	0.0608246
chr4	17628846	17628945	2017166	0	+	0.494949	(0.485,0.523]	chr4	206143	33	UTR3	UTR3:EXON_MRNA	MED28	ENSG00000118579.13	ENST00000237380.12	protein_coding	protein_coding	protein_coding	protein_coding	5	174	2	3.08236	3.193755	3.30515	0.0220012	0.00256238	0.101502	0.0273911
chr20	32478012	32478111	7543648	0	-	0.727273	(0.58,1]	chr20	787372	29	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	72	2	3.09402	3.192875	3.29173	0.0243429	0.0174733	0.106588	0.0928044
chr10	102650474	102650574	4576529	0	+	0.68	(0.58,1]	chr10	437284	8	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1:ENST00000487927.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	70	2	3.13234	3.19283	3.25332	0.0322188	0.0120565	0.121593	0.0754623
chr13	112912317	112912417	5654739	0	+	0.5	(0.485,0.523]	chr13	555099	18	INTRON	INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000442625.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	134	2	2.435	3.19279	3.95058	0.0468339	0.00268525	0.143232	0.0282638
chr14	102148465	102148565	5916275	0	+	0.47	(0.45,0.485]	chr14	578696	79	INTRON	INTRON	WDR20	ENSG00000140153.18	ENST00000557485.5:ENST00000335263.9:ENST00000424963.6:ENST00000322340.9:ENST00000556807.1:ENST00000555879.5:ENST00000561154.1:ENST00000342702.8:ENST00000558567.5:ENST00000299135.6:ENST00000454394.2:ENST00000556094.1:ENST00000556511.2:ENST00000557186.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	88	2	2.98123	3.1925350000000003	3.40384	0.027533	0.0270875	0.119337	0.112782
chr2	202471839	202471937	995172	0	+	0.336735	(0.33,0.36]	chr2	109292	38	INTRON	INTRON	BMPR2	ENSG00000204217.16	ENST00000374580.10:ENST00000374574.2:ENST00000479069.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	84	2	3.08067	3.192475	3.30428	0.0461365	0.014334	0.14307	0.0833845
chr16	89833936	89834034	6525478	0	+	0.520408	(0.485,0.523]	chr16	647498	48	INTRON	INTRON	SPIRE2	ENSG00000204991.11	ENST00000564878.5:ENST00000378247.8:ENST00000393062.6:ENST00000563972.1:ENST00000566337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	125	2	2.28678	3.19193	4.09708	0.046853	0.00772253	0.156896	0.0586912
chr2	73852424	73852524	833276	0	+	0.49	(0.485,0.523]	chr2	94124	3	SS3_PROX	SS3_PROX:INTRON	STAMBP	ENSG00000124356.17	ENST00000339566.7:ENST00000684095.1:ENST00000682847.1:ENST00000683317.1:ENST00000683036.1:ENST00000682157.1:ENST00000683349.1:ENST00000684337.1:ENST00000683247.1:ENST00000682683.1:ENST00000682329.1:ENST00000683149.1:ENST00000682851.1:ENST00000394070.7:ENST00000683728.1:ENST00000409707.6:ENST00000683518.1:ENST00000684585.1:ENST00000683434.1:ENST00000682352.1:ENST00000684697.1:ENST00000682592.1:ENST00000683718.1:ENST00000682423.1:ENST00000478946.2:ENST00000684200.1:ENST00000684355.1:ENST00000684774.1:ENST00000536064.2:ENST00000683465.1:ENST00000684716.1:ENST00000683016.1:ENST00000684174.1:ENST00000684703.1:ENST00000682799.1:ENST00000682998.1:ENST00000682379.1:ENST00000684312.1:ENST00000683852.1:ENST00000684321.1:ENST00000394073.6:ENST00000684671.1:ENST00000682848.1:ENST00000683877.1:ENST00000683530.1:ENST00000683027.1:ENST00000683304.1:ENST00000682784.1:ENST00000683205.1:ENST00000682351.1:ENST00000683818.1:ENST00000684426.1:ENST00000683582.1:ENST00000683417.1:ENST00000683594.1:ENST00000682387.1:ENST00000682747.1:ENST00000682105.1:ENST00000683928.1:ENST00000683391.1:ENST00000684758.1:ENST00000682558.1:ENST00000683902.1:ENST00000432295.7:ENST00000486458.2:ENST00000683314.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	79	2	2.70247	3.191525	3.68058	0.0759932	0.0053378	0.174411	0.0447225
chr3	58019854	58019954	1483152	0	+	0.56	(0.523,0.58]	chr3	159572	106	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	82	2	3.13506	3.19143	3.2478	0.0335771	0.0186841	0.124319	0.0976296
chr2	62894962	62895062	815860	0	+	0.46	(0.45,0.485]	chr2	92141	133	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding	4	150	2	2.93245	3.1912599999999998	3.45007	0.0300648	0.00339534	0.117497	0.0329806
chr11	710786	710886	4785346	0	+	0.68	(0.58,1]	chr11	458133	3	SS5_PROX	SS5_PROX:INTRON	EPS8L2	ENSG00000177106.17	ENST00000524763.5:ENST00000533256.5:ENST00000614442.4:ENST00000534755.5:ENST00000529346.5:ENST00000650127.1:ENST00000526909.5:ENST00000318562.13:ENST00000533500.5:ENST00000527807.5:ENST00000531348.5:ENST00000530636.5:ENST00000526198.5:ENST00000530118.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	163	2	2.70293	3.191245	3.67956	0.00981512	0.004891	0.0664239	0.0457614
chr15	98788198	98788298	6194728	0	+	0.44	(0.419,0.45]	chr15	609667	33	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1:ENST00000557938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	88	2	2.85295	3.191	3.52905	0.0703179	0.00949141	0.168159	0.0650078
chr13	98279998	98280098	5635031	0	+	0.63	(0.58,1]	chr13	553480	348	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	3.1491	3.189585	3.23007	0.0271644	0.0154006	0.112113	0.0869771
chr12	132543818	132543918	5353054	0	+	0.7	(0.58,1]	chr12	523670	155	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	3.02751	3.1890099999999997	3.35051	0.0385189	0.00953058	0.131324	0.0650078
chr7	74364415	74364515	3390933	0	+	0.63	(0.58,1]	chr7	327281	1	SS5_PROX	SS5_PROX:INTRON	CLIP2	ENSG00000106665.16	ENST00000223398.11:ENST00000361545.9	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	3.02751	3.1890099999999997	3.35051	0.0385189	0.00953058	0.131324	0.0650078
chr20	8454947	8455047	7429817	0	+	0.35	(0.33,0.36]	chr20	773698	829	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	500	2	3.16979	3.188415	3.20704	0.00859312	0.00151413	0.0623467	0.0189912
chr5	73699273	73699373	2452423	0	+	0.47	(0.45,0.485]	chr5	244920	140	INTRON	INTRON	ARHGEF28	ENSG00000214944.10	ENST00000545377.5:ENST00000296794.10:ENST00000513042.7:ENST00000509848.5:ENST00000426542.6:ENST00000437974.5	protein_coding	protein_coding	protein_coding	protein_coding	2	81	2	2.80521	3.187995	3.57078	0.0681544	0.00740503	0.164505	0.0553519
chr7	47470213	47470312	3588510	0	-	0.474747	(0.45,0.485]	chr7	346123	171	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	2	81	2	2.80521	3.187995	3.57078	0.0681544	0.00740503	0.164505	0.0553519
chr16	50596598	50596698	6451893	0	+	0.47	(0.45,0.485]	chr16	639902	380	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	109	2	3.06778	3.18757	3.30736	0.0321196	0.00883868	0.121593	0.0617274
chr16	81627689	81627789	6509574	0	+	0.54	(0.523,0.58]	chr16	645926	56	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	4	127	2	2.73046	3.1871099999999997	3.64376	0.0173955	0.0111452	0.0901374	0.071709
chr17	7178304	7178398	6847860	0	-	0.606383	(0.58,1]	chr17	693469	3	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000574388.5:ENST00000573596.1:ENST00000573083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	177	2	1.96068	3.185545	4.41041	0.0249022	0.00263932	0.114418	0.0325876
chrX	133650740	133650840	8112663	0	-	0.28	[0,0.29]	chrX	845480	538	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000692074.1:ENST00000667662.1:ENST00000666017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	116	2	2.81056	3.1854	3.56024	0.0154915	0.00858403	0.0849828	0.0612699
chr13	97363635	97363735	5632227	0	+	0.36	(0.33,0.36]	chr13	553214	56	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000449284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	213	2	2.98783	3.1853	3.38277	0.0278658	0.00169985	0.113221	0.0205428
chr7	55038638	55038738	3371741	0	+	0.28	[0,0.29]	chr7	325285	189	INTRON	INTRON	EGFR	ENSG00000146648.20	ENST00000275493.7:ENST00000344576.7:ENST00000455089.5:ENST00000454757.6:ENST00000342916.7:ENST00000420316.6:ENST00000459688.1:ENST00000463948.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	79	2	2.85917	3.1847450000000004	3.51032	0.0318818	0.0169953	0.129299	0.0889243
chr6	156981134	156981234	3051501	0	+	0.47	(0.45,0.485]	chr6	297023	42	INTRON	INTRON	ARID1B	ENSG00000049618.24	ENST00000346085.10:ENST00000636930.2:ENST00000647938.1:ENST00000350026.10:ENST00000674298.1:ENST00000674190.1:ENST00000414678.7:ENST00000638000.1:ENST00000319584.11:ENST00000452544.2:ENST00000637887.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	81	2	2.69512	3.1830249999999998	3.67093	0.0794176	0.00582542	0.176565	0.0473208
chr3	12965399	12965498	1688783	0	-	0.575758	(0.523,0.58]	chr3	176520	44	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	78	2	2.77655	3.1829099999999997	3.58927	0.0685533	0.00656975	0.165066	0.0510026
chr22	29827376	29827476	7784830	0	-	0.46	(0.45,0.485]	chr22	816445	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ASCC2	ENSG00000100325.15	ENST00000542393.5:ENST00000307790.8:ENST00000458594.5:ENST00000397771.6:ENST00000449900.6:ENST00000431535.5:ENST00000495967.5:ENST00000412689.5:ENST00000465667.6:ENST00000495681.5:ENST00000462454.1:ENST00000453160.5:ENST00000460313.1:ENST00000454854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	112	2	2.87419	3.18282	3.49145	0.061784	0.00304799	0.158872	0.0307059
chr11	68351413	68351512	4882472	0	+	0.565657	(0.523,0.58]	chr11	470548	28	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	112	2	2.60398	3.182525	3.76107	0.0241539	0.0141879	0.112732	0.0816012
chr1	44245752	44245851	459630	0	-	0.535354	(0.523,0.58]	chr1	55307	33	INTRON	INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	78	2	2.88392	3.1814	3.47888	0.0586821	0.00856566	0.155604	0.0612
chr16	50612753	50612852	6452055	0	+	0.616162	(0.58,1]	chr16	639908	40	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	68	2	2.83384	3.18053	3.52722	0.0529065	0.00611467	0.14912	0.0489549
chr8	127949135	127949235	3919351	0	+	0.49	(0.485,0.523]	chr8	374241	58	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1	lncRNA	lncRNA	lncRNA	lncRNA	4	129	2	3.16553	3.180465	3.1954	0.0364043	0.00373279	0.128173	0.0351464
chr22	28887060	28887159	7705311	0	+	0.353535	(0.33,0.36]	chr22	806317	26	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7	protein_coding	protein_coding	protein_coding	protein_coding	4	153	2	2.5884	3.18038	3.77236	0.0524591	0.00157456	0.14912	0.0195476
chr17	77214411	77214508	6803118	0	+	0.71134	(0.58,1]	chr17	686684	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000436233.9:ENST00000443798.8	protein_coding	protein_coding	protein_coding	protein_coding	4	112	2	2.12324	3.179455	4.23567	0.0642584	8.49275e-4	0.161669	0.0126615
chr1	119726350	119726445	224068	0	+	0.442105	(0.419,0.45]	chr1	24646	1	SS3_PROX	SS3_PROX:INTRON	PHGDH	ENSG00000092621.13	ENST00000641597.1:ENST00000493622.5:ENST00000641213.1:ENST00000641947.1:ENST00000642041.1:ENST00000641074.1:ENST00000641115.1:ENST00000642021.1:ENST00000641491.1:ENST00000641023.2:ENST00000369409.9:ENST00000641573.1:ENST00000641513.1:ENST00000641375.1:ENST00000641891.1:ENST00000641570.1:ENST00000641587.1:ENST00000641371.1:ENST00000462324.2:ENST00000641272.1:ENST00000641247.1:ENST00000641756.1:ENST00000641711.1:ENST00000641927.1:ENST00000641314.1:ENST00000369407.3:ENST00000641811.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	169	2	2.33695	3.178355	4.01976	0.0825989	9.47534e-4	0.179401	0.0136257
chr9	124654407	124654507	4404189	0	-	0.49	(0.485,0.523]	chr9	419893	587	INTRON	INTRON	NR6A1	ENSG00000148200.17	ENST00000487099.7:ENST00000373584.7:ENST00000416460.6:ENST00000344523.8	protein_coding	protein_coding	protein_coding	protein_coding	2	79	2	2.57989	3.178095	3.7763	0.0899526	0.00420211	0.185791	0.0380601
chr7	219154	219253	3305846	0	+	0.616162	(0.58,1]	chr7	320161	98	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	4	109	2	2.81461	3.177605	3.5406	0.0154024	0.00731787	0.0849828	0.0550721
chr11	65427566	65427665	4871617	0	+	0.545455	(0.523,0.58]	chr11	468177	49	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	36	1404	2	2.73259	3.177595	3.6226	0.00249113	0.00213941	0.0291055	0.0267846
chr16	20904809	20904909	6418007	0	+	0.4	(0.39,0.419]	chr16	634694	17	INTRON	INTRON	LYRM1	ENSG00000102897.10	ENST00000568663.5:ENST00000412082.6:ENST00000439021.5:ENST00000567165.5:ENST00000569023.5:ENST00000568820.5:ENST00000562740.5:ENST00000219168.8:ENST00000567954.6:ENST00000396052.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	117	2	2.92909	3.1770050000000003	3.42492	0.0609293	0.00416482	0.158506	0.037856
chr7	139682468	139682568	3722970	0	-	0.64	(0.58,1]	chr7	357498	504	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	5	58	2	1.6588	3.17695	4.6951	0.0677297	0.0521567	0.193274	0.148503
chr10	21671881	21671978	4458253	0	+	0.474227	(0.45,0.485]	chr10	427000	8	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	166	2	2.41058	3.1766449999999997	3.94271	0.0152276	0.0110873	0.0862856	0.0712729
chr19	2338145	2338240	7189508	0	+	0.589474	(0.58,1]	chr19	731795	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000593243.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	93	2	2.7859	3.175835	3.56577	0.0146864	0.0136245	0.0826843	0.0811816
chr4	39923546	39923645	2218612	0	-	0.585859	(0.58,1]	chr4	224220	4	INTRON	INTRON	PDS5A	ENSG00000121892.15	ENST00000303538.13:ENST00000503396.5:ENST00000513798.1	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	3.09824	3.17578	3.25332	0.0341637	0.0120565	0.125129	0.0754623
chr16	81687590	81687689	6510187	0	+	0.515152	(0.485,0.523]	chr16	645979	86	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	3.07448	3.17553	3.27658	0.0319818	0.0214987	0.121593	0.10537
chr20	32377745	32377845	7455883	0	+	0.49	(0.485,0.523]	chr20	776143	53	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	82	2	3.07448	3.17553	3.27658	0.0319818	0.0214987	0.121593	0.10537
chr16	89834331	89834430	6525482	0	+	0.585859	(0.58,1]	chr16	647498	52	INTRON	INTRON	SPIRE2	ENSG00000204991.11	ENST00000564878.5:ENST00000378247.8:ENST00000393062.6:ENST00000563972.1:ENST00000566337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	87	2	2.47204	3.1753549999999997	3.87867	0.0623526	0.00797934	0.181127	0.0596361
chr3	195150892	195150992	1981522	0	-	0.62	(0.58,1]	chr3	201666	40	INTRON	INTRON	XXYLT1	ENSG00000173950.16	ENST00000310380.11:ENST00000437101.5:ENST00000473200.1:ENST00000429994.5:ENST00000418940.5:ENST00000491138.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	91	2	3.09824	3.175185	3.25213	0.0341637	0.00405239	0.125129	0.0371518
chr10	79113719	79113819	4532492	0	+	0.56	(0.523,0.58]	chr10	432420	441	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	1.91424	3.1751050000000003	4.43597	0.102931	0.0313935	0.197541	0.127822
chr8	124660714	124660814	4064264	0	-	0.46	(0.45,0.485]	chr8	387128	414	INTRON	INTRON	MTSS1	ENSG00000170873.19	ENST00000518547.6:ENST00000378017.7:ENST00000325064.9:ENST00000522162.1:ENST00000529463.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	131	2	2.67085	3.174995	3.67914	0.0174714	0.0137017	0.0903552	0.0814223
chr19	55240800	55240844	7407341	0	-	0.636364	(0.58,1]	chr19	771265	1	SS5_PROX	SS5_PROX:INTRON	PPP6R1	ENSG00000105063.19	ENST00000412770.7:ENST00000587283.5:ENST00000591323.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	68	2	2.95313	3.174945	3.39676	0.0435972	0.0085026	0.139245	0.0608246
chr7	47479902	47480002	3588607	0	-	0.63	(0.58,1]	chr7	346123	268	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.95313	3.174945	3.39676	0.0435972	0.0085026	0.139245	0.0608246
chr9	129497668	129497764	4250752	0	+	0.5	(0.485,0.523]	chr9	404722	2	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	78	2	2.70247	3.174835	3.6472	0.0759932	0.00579534	0.174411	0.0472203
chr11	102445338	102445438	5114482	0	-	0.33	(0.29,0.33]	chr11	496626	428	INTRON	INTRON	TMEM123	ENSG00000152558.15	ENST00000361236.7:ENST00000398136.7:ENST00000532161.5:ENST00000528969.5:ENST00000529492.5:ENST00000525577.5:ENST00000531103.5:ENST00000526676.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	335	2	2.99287	3.1745200000000002	3.35617	0.00691543	0.0027511	0.0553898	0.0285628
chr8	127949735	127949835	3919357	0	+	0.62	(0.58,1]	chr8	374241	64	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000661830.1:ENST00000657289.1:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000654324.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000657356.1:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000660438.1:ENST00000659326.1:ENST00000666842.1:ENST00000517790.2:ENST00000654369.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000523068.2:ENST00000519481.6:ENST00000669082.1:ENST00000671088.1:ENST00000670204.1:ENST00000652695.1:ENST00000517838.6:ENST00000663461.1:ENST00000513868.6:ENST00000670626.1	lncRNA	lncRNA	lncRNA	lncRNA	4	131	2	2.2895	3.1742999999999997	4.0591	0.0665599	3.66295e-4	0.162495	0.00700977
chr20	33009565	33009661	7457384	0	+	0.604167	(0.58,1]	chr20	776365	5	INTRON	INTRON	BPIFB2	ENSG00000078898.7	ENST00000170150.4	protein_coding	protein_coding	protein_coding	protein_coding	6	169	2	3.03837	3.173725	3.30908	0.0104949	0.00266569	0.0690941	0.0280949
chr20	33010723	33010823	7457396	0	+	0.51	(0.485,0.523]	chr20	776366	3	SS3_PROX	SS3_PROX:INTRON	BPIFB2	ENSG00000078898.7	ENST00000170150.4	protein_coding	protein_coding	protein_coding	protein_coding	10	213	2	2.0038299999999998	3.173445	4.34306	0.0249103	0.00487623	0.114418	0.045672
chr6	1860932	1861032	3081482	0	-	0.52	(0.485,0.523]	chr6	299482	1180	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	144	2	2.58276	3.1730400000000003	3.76332	0.0500643	0.00134343	0.147892	0.0174496
chr7	47380911	47381011	3587601	0	-	0.56	(0.523,0.58]	chr7	346036	109	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	107	2	2.55725	3.1723999999999997	3.78755	0.0522011	0.00401039	0.148503	0.0371192
chr5	126593350	126593404	2752486	0	-	0.481481	(0.45,0.485]	chr5	269799	1	CDS	CDS:UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	ALDH7A1	ENSG00000164904.18	ENST00000637782.1:ENST00000635851.1:ENST00000409134.8:ENST00000636872.1:ENST00000637206.1:ENST00000637272.1:ENST00000636886.1:ENST00000636879.1:ENST00000636808.1:ENST00000636743.1:ENST00000553117.5:ENST00000458249.6:ENST00000638008.1:ENST00000636225.1:ENST00000636062.1:ENST00000503281.6:ENST00000637964.1:ENST00000509459.6:ENST00000413020.6:ENST00000511266.6:ENST00000510111.6:ENST00000412186.2:ENST00000509270.2:ENST00000636190.1:ENST00000479989.6:ENST00000635933.1:ENST00000635858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	109	2	2.89353	3.17165	3.44977	0.0255605	0.0133199	0.109062	0.0799309
chr17	72563111	72563211	6963942	0	-	0.48	(0.45,0.485]	chr17	710389	287	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	4	132	2	3.13662	3.17029	3.20396	0.0377633	0.0043287	0.131324	0.0389471
chr11	2665906	2666006	4971970	0	-	0.54	(0.523,0.58]	chr11	481197	577	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	3	104	2	3.10715	3.169165	3.23118	0.0418959	0.00547248	0.136901	0.0454065
chrX	9531188	9531288	7843108	0	+	0.48	(0.45,0.485]	chrX	822407	1	SS5_PROX	SS5_PROX:INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1	protein_coding	protein_coding	protein_coding	protein_coding	4	147	2	2.78592	3.1686449999999997	3.55137	0.0381014	0.00260329	0.131324	0.0277913
chr6	157312484	157312584	3298416	0	-	0.59	(0.58,1]	chr6	319197	191	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	7	187	2	2.98002	3.168515	3.35701	0.00953031	0.00238567	0.0658012	0.0260605
chr5	32158562	32158662	2630500	0	-	0.56	(0.523,0.58]	chr5	261026	143	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	240	2	2.32086	3.168455	4.01605	0.0471235	3.20678e-4	0.143232	0.00636761
chr6	3446012	3446112	3087958	0	-	0.5	(0.485,0.523]	chr6	299812	11	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000485307.5:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding	3	115	2	2.94621	3.1676450000000003	3.38908	0.0277477	0.0107186	0.112896	0.0700744
chr7	100633956	100634056	3654946	0	-	0.68	(0.58,1]	chr7	352298	4	SS3_PROX	SS3_PROX:INTRON	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	69	2	3.13234	3.1672450000000003	3.20215	0.0322188	0.0136092	0.121593	0.0811697
chr17	38729295	38729395	6729376	0	+	0.52	(0.485,0.523]	chr17	676371	38	UTR3	UTR3:EXON_MRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5	protein_coding	protein_coding	protein_coding	protein_coding	3	104	2	3.05773	3.167155	3.27658	0.0319818	0.00856934	0.121593	0.0612055
chr22	50727898	50727997	7755470	0	+	0.616162	(0.58,1]	chr22	812807	34	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	100	2	2.98228	3.1663949999999996	3.35051	0.0198344	0.00953058	0.096302	0.0650078
chr6	158327667	158327767	3061798	0	+	0.36	(0.33,0.36]	chr6	297592	130	INTRON	INTRON	ENSG00000274023:TULP4	ENSG00000274023.1:ENSG00000130338.13	ENST00000619713.1:ENST00000367097.8:ENST00000367094.6:ENST00000616856.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	2	83	2	2.52202	3.16593	3.80984	0.100822	0.0044449	0.196131	0.0396254
chr6	158572619	158572719	3064021	0	+	0.43	(0.419,0.45]	chr6	297687	120	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	7	268	2	2.713	3.16481	3.61662	0.0270471	0.0027153	0.112113	0.028553
chr7	47366967	47367067	3587461	0	-	0.6	(0.58,1]	chr7	346030	203	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	2.97713	3.163995	3.35086	0.0226795	0.0218816	0.108193	0.101015
chr1	1306571	1306671	380912	0	-	0.65	(0.58,1]	chr1	43019	1	SS5_PROX	SS5_PROX:INTRON	ACAP3	ENSG00000131584.19	ENST00000354700.10:ENST00000472541.5:ENST00000354980.7:ENST00000479108.5:ENST00000438966.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	95	2	2.6194	3.163825	3.70825	0.0202577	0.0111705	0.102015	0.0716525
chr19	18467308	18467407	7347864	0	-	0.585859	(0.58,1]	chr19	761486	10	INTRON	INTRON	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6:ENST00000596124.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	78	2	2.71042	3.162635	3.61485	0.0396128	0.0133763	0.143388	0.0790342
chr6	158019491	158019590	3059687	0	+	0.646465	(0.58,1]	chr6	297373	13	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	6	137	2	2.46565	3.162045	3.85844	0.0101595	0.00830865	0.0677833	0.061139
chr15	67140122	67140222	6139824	0	+	0.39	(0.36,0.39]	chr15	603963	4	SS5_PROX	SS5_PROX:INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1:ENST00000559092.1:ENST00000560175.5:ENST00000540846.6:ENST00000558894.5:ENST00000439724.7:ENST00000558739.1:ENST00000681239.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	85	2	3.05499	3.1618399999999998	3.26869	0.0505441	0.016118	0.148456	0.0897679
chr1	8701056	8701156	394565	0	-	0.42	(0.419,0.45]	chr1	45065	443	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000468247.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	120	2	2.74434	3.161785	3.57923	0.0243601	0.0208637	0.106605	0.102883
chr22	28919080	28919180	7705632	0	+	0.54	(0.523,0.58]	chr22	806321	12	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7:ENST00000402174.5	protein_coding	protein_coding	protein_coding	protein_coding	6	197	2	2.96158	3.161635	3.36169	0.0271143	0.0014535	0.112113	0.0184904
chr9	96608804	96608904	4345527	0	-	0.31	(0.29,0.33]	chr9	415195	417	INTRON	INTRON	CDC14B	ENSG00000081377.17	ENST00000474602.5:ENST00000412285.6:ENST00000375241.6:ENST00000375240.7:ENST00000463569.5:ENST00000415608.1:ENST00000496750.5:ENST00000463547.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	103	2	3.1488	3.1612999999999998	3.1738	0.0362747	0.00700975	0.127965	0.0536484
chr2	54533111	54533211	799044	0	+	0.54	(0.523,0.58]	chr2	90794	45	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7	protein_coding	protein_coding	protein_coding	protein_coding	6	159	2	2.67882	3.16129	3.64376	0.0173955	0.00727201	0.0901374	0.0548186
chr2	215974908	215975008	1369032	0	-	0.33	(0.29,0.33]	chr2	145838	274	INTRON	INTRON	MREG	ENSG00000118242.16	ENST00000263268.11:ENST00000620139.4:ENST00000439791.5:ENST00000424992.5:ENST00000420348.1	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	2.95342	3.1584399999999997	3.36346	0.0280419	0.026605	0.121542	0.111446
chr17	72539366	72539465	6963704	0	-	0.474747	(0.45,0.485]	chr17	710389	49	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	3	116	2	2.61676	3.15837	3.69998	0.0883035	0.00174842	0.183874	0.0210767
chr2	42257130	42257229	773922	0	+	0.393939	(0.39,0.419]	chr2	88941	1	INTRON	INTRON	EML4	ENSG00000143924.19	ENST00000318522.10:ENST00000402711.6:ENST00000409040.1:ENST00000401738.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	302	2	2.7946	3.1583550000000002	3.52211	0.0201324	0.0032628	0.0973365	0.0321035
chr17	38743405	38743503	6895609	0	-	0.591837	(0.58,1]	chr17	700401	26	INTRON	INTRON	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000611883.4:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	2.87471	3.15814	3.44157	0.0495478	0.00760198	0.146562	0.0561937
chr7	5419362	5419461	3536264	0	-	0.676768	(0.58,1]	chr7	341498	121	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000399434.2	protein_coding	protein_coding	protein_coding	protein_coding	4	125	2	3.1183	3.15618	3.19406	0.0152878	0.00474968	0.0849465	0.0413976
chr1	44812357	44812457	115026	0	+	0.52	(0.485,0.523]	chr1	14296	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BTBD19	ENSG00000222009.9	ENST00000450269.6:ENST00000409335.6:ENST00000439563.2:ENST00000485668.5:ENST00000482715.5:ENST00000475105.5:ENST00000495433.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	103	2	3.11352	3.15446	3.1954	0.0364043	0.00747179	0.128173	0.0555092
chr17	57275665	57275763	6759956	0	+	0.510204	(0.485,0.523]	chr17	682085	13	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	103	2	3.11352	3.15446	3.1954	0.0364043	0.00747179	0.128173	0.0555092
chr21	44871762	44871860	7678560	0	-	0.561224	(0.523,0.58]	chr21	802773	58	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	633	2	2.87402	3.154	3.43398	0.00434035	0.00381036	0.0398349	0.0390182
chr16	52537150	52537250	6589761	0	-	0.35	(0.33,0.36]	chr16	658709	172	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	209	2	2.77356	3.153995	3.53443	0.0108928	0.00828907	0.0707085	0.0597346
chr19	34383297	34383397	7243183	0	+	0.49	(0.485,0.523]	chr19	741718	13	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	118	2	2.33451	3.153595	3.97268	0.0426546	0.00969268	0.149802	0.0661778
chr12	132537845	132537945	5352994	0	+	0.55	(0.523,0.58]	chr12	523670	95	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	2	80	2	3.08569	3.1532150000000003	3.22074	0.0350559	0.020773	0.12704	0.102713
chr17	76438837	76438937	6976382	0	-	0.55	(0.523,0.58]	chr17	712141	329	INTRON	INTRON	UBE2O	ENSG00000175931.13	ENST00000319380.12:ENST00000586409.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	78	2	3.0773	3.15315	3.229	0.0438724	0.0152072	0.139792	0.0861813
chr13	75392790	75392890	5727112	0	-	0.41	(0.39,0.419]	chr13	561722	156	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	3	115	2	2.47803	3.1530199999999997	3.82801	0.0653554	0.0045308	0.162385	0.0400651
chr20	23633999	23634099	7537522	0	-	0.52	(0.485,0.523]	chr20	786638	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	CST3	ENSG00000101439.9	ENST00000398411.5:ENST00000398409.1:ENST00000376925.8	protein_coding	protein_coding	protein_coding	protein_coding	5	170	2	2.87298	3.1527149999999997	3.43245	0.0313613	0.00180393	0.12069	0.0215053
chr19	942518	942618	7185271	0	+	0.63	(0.58,1]	chr19	730741	94	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	243	2	3.07326	3.1525499999999997	3.23184	0.00618316	0.00240622	0.0519442	0.0261006
chr17	55276983	55277083	6757228	0	+	0.37	(0.36,0.39]	chr17	681704	85	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	26	787	2	2.57642	3.1525100000000004	3.7286	0.00488979	0.00368424	0.0422004	0.0389784
chr20	36857478	36857578	7557076	0	-	0.51	(0.485,0.523]	chr20	789155	177	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	4	124	2	2.74271	3.1524150000000004	3.56212	0.0199384	0.0109679	0.0967486	0.070847
chr17	55414632	55414732	6930479	0	-	0.24	[0,0.29]	chr17	706229	4	SS3_PROX	SS3_PROX:INTRON	MMD	ENSG00000108960.9	ENST00000262065.8:ENST00000649377.1:ENST00000571578.1	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	2.53067	3.15235	3.77403	0.0856331	0.00383316	0.181766	0.0358643
chr14	68902177	68902276	5999363	0	-	0.535354	(0.523,0.58]	chr14	588711	10	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6:ENST00000683261.1:ENST00000684096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	151	2	2.26246	3.152065	4.04167	0.0517819	0.00206682	0.148503	0.0235758
chr8	96522000	96522100	3869015	0	+	0.36	(0.33,0.36]	chr8	371279	273	INTRON	INTRON	SDC2	ENSG00000169439.12	ENST00000302190.9:ENST00000518385.5:ENST00000519587.1:ENST00000520233.1:ENST00000522911.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	81	2	2.95996	3.152025	3.34409	0.0551496	0.0131368	0.153649	0.0788915
chr10	79166827	79166927	4533025	0	+	0.65	(0.58,1]	chr10	432438	43	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	2.95313	3.15182	3.35051	0.0435972	0.00953058	0.139245	0.0650078
chr8	143594518	143594618	4097197	0	-	0.64	(0.58,1]	chr8	389360	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	EEF1D	ENSG00000104529.19	ENST00000317198.10:ENST00000532400.1:ENST00000529272.5:ENST00000395119.7:ENST00000533833.5:ENST00000528610.5:ENST00000442189.6:ENST00000618139.4:ENST00000526838.5:ENST00000531621.5:ENST00000529007.5:ENST00000524624.5:ENST00000530191.6:ENST00000534377.6:ENST00000529516.6:ENST00000419152.7:ENST00000531218.6:ENST00000533494.6:ENST00000534380.6:ENST00000524397.5:ENST00000526786.5:ENST00000530848.5:ENST00000534232.5:ENST00000533749.5:ENST00000525695.5:ENST00000526340.5:ENST00000532543.1:ENST00000531931.1:ENST00000423316.7:ENST00000526710.1:ENST00000531281.1:ENST00000532596.5:ENST00000531670.5:ENST00000529832.5:ENST00000530306.5:ENST00000530545.5:ENST00000525261.5:ENST00000534804.5:ENST00000524900.1:ENST00000531953.5:ENST00000526133.1:ENST00000534475.5:ENST00000528303.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	122	2	2.61273	3.151595	3.69046	0.0388117	0.00114616	0.131324	0.0156638
chr3	30635846	30635946	1433385	0	+	0.43	(0.419,0.45]	chr3	153006	26	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4:ENST00000673250.1:ENST00000672866.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	456	2	3.03964	3.151515	3.26339	0.0178672	0.00126763	0.0917312	0.0168056
chr16	89298964	89299061	6659795	0	-	0.690722	(0.58,1]	chr16	666649	2	UTR3	UTR3:EXON_MRNA:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	151	2	2.63881	3.151015	3.66322	0.0370835	6.14419e-4	0.12995	0.0101067
chr6	16760697	16760797	3104461	0	-	0.71	(0.58,1]	chr6	300921	7	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000473388.6:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1:ENST00000467008.5:ENST00000498374.1:ENST00000492857.1:ENST00000479680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	249	2	2.76028	3.1508399999999996	3.5414	0.004178	0.00370385	0.0419484	0.0349425
chr16	57377950	57378048	6466044	0	+	0.530612	(0.523,0.58]	chr16	641366	11	UTR5	UTR5:EXON_MRNA:INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1:ENST00000565912.1	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	2.98385	3.15052	3.31719	0.0505794	0.0124719	0.148456	0.0765738
chr19	32351230	32351330	7238531	0	+	0.39	(0.36,0.39]	chr19	741026	35	INTRON	INTRON	ZNF507	ENSG00000168813.17	ENST00000311921.8:ENST00000355898.6:ENST00000587084.5:ENST00000544431.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	83	2	2.80799	3.150265	3.49254	0.0716011	0.00987589	0.168159	0.0664239
chr1	17590074	17590173	54080	0	+	0.555556	(0.523,0.58]	chr1	5465	12	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5	protein_coding	protein_coding	protein_coding	protein_coding	2	79	2	3.13506	3.150065	3.16507	0.0382777	0.0186841	0.131324	0.0976296
chr5	139659254	139659354	2549753	0	+	0.63	(0.58,1]	chr5	253168	77	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	2.97713	3.149365	3.3216	0.0230709	0.0226795	0.108193	0.102982
chr3	120630593	120630690	1887413	0	-	0.371134	(0.36,0.39]	chr3	191478	17	INTRON	INTRON	HGD	ENSG00000113924.12	ENST00000283871.10:ENST00000492108.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	148	2	2.61091	3.14859	3.68627	0.0400426	0.00632798	0.134084	0.0501889
chr16	50596898	50596998	6451896	0	+	0.58	(0.523,0.58]	chr16	639902	383	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	193	2	3.06366	3.1480699999999997	3.23248	0.0227901	0.0020948300000000002	0.102982	0.0238576
chr18	6384190	6384289	7113571	0	-	0.373737	(0.36,0.39]	chr18	723940	94	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000317931.12:ENST00000400104.7:ENST00000583809.5:ENST00000581231.5:ENST00000580162.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	83	2	2.87382	3.1477649999999997	3.42171	0.0653866	0.0115651	0.162385	0.0732257
chr20	38427521	38427600	7561102	0	-	0.481013	(0.45,0.485]	chr20	789771	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SNHG17	ENSG00000196756.14	ENST00000654008.2:ENST00000658076.1:ENST00000662982.2:ENST00000456953.7:ENST00000654183.2:ENST00000663540.2:ENST00000651115.2:ENST00000660885.2:ENST00000662213.1:ENST00000665233.2:ENST00000666268.2:ENST00000665735.1:ENST00000660558.2:ENST00000691280.1:ENST00000658488.2:ENST00000688336.1:ENST00000668054.2:ENST00000690441.1:ENST00000655520.2:ENST00000687490.1:ENST00000664626.1:ENST00000658051.1:ENST00000668042.1:ENST00000686971.1:ENST00000663187.1:ENST00000669114.1:ENST00000653343.1:ENST00000666225.1:ENST00000657868.1:ENST00000663534.1:ENST00000658141.1:ENST00000689917.1:ENST00000664073.2:ENST00000653697.1:ENST00000656320.1:ENST00000686814.1:ENST00000417578.7:ENST00000654853.1:ENST00000665440.1:ENST00000436764.7:ENST00000668482.2:ENST00000671249.1:ENST00000655692.1:ENST00000662568.1:ENST00000659255.1:ENST00000693250.1:ENST00000691368.1:ENST00000693227.1:ENST00000690361.1:ENST00000670051.1:ENST00000667912.1:ENST00000693665.1:ENST00000665181.1:ENST00000687532.1:ENST00000691386.1:ENST00000693684.1:ENST00000666331.1:ENST00000669480.1:ENST00000658905.1:ENST00000661252.1:ENST00000669137.1:ENST00000688133.1:ENST00000689414.1:ENST00000691314.1:ENST00000669033.1:ENST00000686145.1:ENST00000653938.1:ENST00000663784.1:ENST00000665003.1:ENST00000659400.1:ENST00000653753.1:ENST00000449469.5:ENST00000654389.1:ENST00000657429.1:ENST00000656023.1:ENST00000692262.1:ENST00000414142.5:ENST00000670958.1:ENST00000657216.2:ENST00000664636.1:ENST00000657843.1:ENST00000660189.1:ENST00000660064.1:ENST00000423536.6:ENST00000658455.1:ENST00000666419.1:ENST00000413755.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	129	2	3.06236	3.1464350000000003	3.23051	0.0362376	0.0052412	0.127941	0.0443848
chr17	82004543	82004643	6815342	0	+	0.64	(0.58,1]	chr17	688641	3	EXON_MRNA	EXON_MRNA:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	151	2	2.12324	3.14596	4.16868	0.0642584	2.57801e-4	0.161669	0.00545505
chr2	88564568	88564667	1215217	0	-	0.515152	(0.485,0.523]	chr2	130953	23	EXON_MRNA	EXON_MRNA:INTRON	EIF2AK3	ENSG00000172071.15	ENST00000303236.9:ENST00000652736.1:ENST00000682603.1:ENST00000684740.1:ENST00000683663.1:ENST00000684642.1:ENST00000682276.1:ENST00000682952.1:ENST00000684455.1:ENST00000682103.1:ENST00000682468.1:ENST00000682844.1:ENST00000652099.1:ENST00000682892.1:ENST00000415570.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	140	2	2.79584	3.1458399999999997	3.49584	0.0356117	0.00279187	0.127588	0.0288863
chr2	3458661	3458761	711019	0	+	0.49	(0.485,0.523]	chr2	83175	2	SS5_PROX	SS5_PROX:INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000479955.5:ENST00000497597.5:ENST00000473348.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	157	2	2.56612	3.14568	3.72524	0.0150536	0.00985458	0.0840434	0.0664239
chr20	32478111	32478210	7543649	0	-	0.535354	(0.523,0.58]	chr20	787372	30	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	113	2	2.43762	3.144825	3.85203	0.0343548	0.0120823	0.134666	0.0745767
chr15	101360419	101360518	6363143	0	-	0.666667	(0.58,1]	chr15	627205	40	INTRON	INTRON	PCSK6	ENSG00000140479.18	ENST00000677364.1:ENST00000676598.1:ENST00000558951.5:ENST00000398185.6:ENST00000611716.5:ENST00000618548.4:ENST00000677528.1:ENST00000679007.1:ENST00000557794.5:ENST00000619160.4:ENST00000622483.4:ENST00000559605.1:ENST00000560902.5:ENST00000611967.4:ENST00000615296.4:ENST00000676494.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	110	2	2.44972	3.14382	3.83792	0.0184955	0.00865536	0.096816	0.0623824
chr16	20674822	20674922	6416205	0	+	0.56	(0.523,0.58]	chr16	634380	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000614721.1:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	102	2	3.10715	3.143275	3.1794	0.0418959	0.00624033	0.136901	0.0497314
chr17	57358121	57358221	6760786	0	+	0.47	(0.45,0.485]	chr17	682104	474	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1:ENST00000442934.6:ENST00000579180.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	106	2	2.95398	3.1430350000000002	3.33209	0.0308842	0.0115759	0.119556	0.0732749
chr9	123882019	123882119	4401414	0	-	0.47	(0.45,0.485]	chr9	419733	26	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	3	113	2	2.78592	3.142925	3.49993	0.0381014	0.00874614	0.131324	0.0613439
chr2	62894563	62894663	815856	0	+	0.41	(0.39,0.419]	chr2	92141	129	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding	6	213	2	2.31486	3.142845	3.97083	0.0538335	0.00100573	0.15104	0.0142602
chr20	35658429	35658529	7554089	0	-	0.55	(0.523,0.58]	chr20	788669	1	SS5_PROX	SS5_PROX:INTRON	CPNE1:RBM12	ENSG00000214078.13:ENSG00000244462.8	ENST00000352393.8:ENST00000397443.7:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000435747.2:ENST00000374114.8:ENST00000359646.1:ENST00000374104.7:ENST00000424458.5:ENST00000431148.1:ENST00000435161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	76	2	2.66054	3.142405	3.62427	0.0806884	0.0060311	0.177452	0.0484641
chr11	68352204	68352303	4882480	0	+	0.464646	(0.45,0.485]	chr11	470548	36	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	80	2	3.06332	3.14184	3.22036	0.0467992	0.016408	0.143232	0.0911382
chr16	81545181	81545281	6508745	0	+	0.47	(0.45,0.485]	chr16	645911	493	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	4	132	2	2.29509	3.141595	3.9881	0.0609536	0.0026335	0.158506	0.0278798
chr2	240623992	240624091	1075183	0	+	0.69697	(0.58,1]	chr2	116654	46	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	7	207	2	2.93394	3.1407800000000003	3.34762	0.0114952	0.00161772	0.0726275	0.0199478
chr10	32055647	32055747	4662335	0	-	0.69	(0.58,1]	chr10	445119	4	SS5_PROX	SS5_PROX:INTRON	KIF5B	ENSG00000170759.11	ENST00000302418.5	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	3.13234	3.14072	3.1491	0.0322188	0.0154006	0.121593	0.0869771
chr10	130177165	130177264	4615944	0	+	0.424242	(0.419,0.45]	chr10	441040	17	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	89	2	3.06656	3.13983	3.2131	0.0423761	0.0252325	0.13762	0.114921
chr6	130871474	130871573	3260251	0	-	0.515152	(0.485,0.523]	chr6	315469	7	INTRON	INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000528282.5:ENST00000531410.5:ENST00000392427.7:ENST00000530757.5:ENST00000368128.6:ENST00000527411.5:ENST00000524581.5:ENST00000525271.5:ENST00000529208.5:ENST00000525193.5:ENST00000527659.5:ENST00000527017.6:ENST00000527423.5:ENST00000456097.6:ENST00000525198.1:ENST00000533912.1:ENST00000534166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	109	2	2.55201	3.138625	3.72524	0.0272692	0.0150536	0.119337	0.0840434
chrX	153646458	153646557	7960827	0	+	0.50505	(0.485,0.523]	chrX	833164	35	INTRON	INTRON	DUSP9	ENSG00000130829.18	ENST00000477033.1:ENST00000370167.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	116	2	2.33451	3.137165	3.93982	0.0426546	0.0102856	0.149802	0.0684871
chr17	55276883	55276983	6757227	0	+	0.28	[0,0.29]	chr17	681704	84	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	442	2	2.83061	3.13683	3.44305	0.0102347	4.55762e-4	0.0684871	0.00820929
chr5	93584453	93584548	2482615	0	+	0.863158	(0.58,1]	chr5	247286	14	UTR5	UTR5:EXON_MRNA	NR2F1	ENSG00000175745.14	ENST00000327111.8	protein_coding	protein_coding	protein_coding	protein_coding	4	110	2	2.4147	3.13657	3.85844	0.020116	0.00830865	0.101405	0.061139
chr10	131919285	131919385	4616209	0	+	0.58	(0.523,0.58]	chr10	441069	63	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	78	2	3.13506	3.13573	3.1364	0.0400336	0.0186841	0.134064	0.0976296
chr7	6700820	6700914	3542721	0	-	0.542553	(0.523,0.58]	chr7	342317	1	UTR5	UTR5:EXON_MRNA:INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000404360.5:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	2	78	2	3.13506	3.13573	3.1364	0.0400336	0.0186841	0.134064	0.0976296
chr16	81543482	81543582	6508728	0	+	0.62	(0.58,1]	chr16	645911	476	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	5	147	2	2.73501	3.1352149999999996	3.53542	0.0216297	0.00181405	0.100615	0.0215865
chr22	31624988	31625080	7788315	0	-	0.51087	(0.485,0.523]	chr22	817184	8	INTRON	INTRON	PISD	ENSG00000241878.12	ENST00000460723.5:ENST00000439502.7:ENST00000382151.6:ENST00000437808.5:ENST00000266095.9:ENST00000473770.5:ENST00000397500.5:ENST00000435900.5:ENST00000474017.5:ENST00000478893.5:ENST00000491342.1:ENST00000422020.5:ENST00000442379.1:ENST00000429683.1:ENST00000431201.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	103	2	2.84351	3.134955	3.4264	0.025039	0.0142636	0.10758	0.0833845
chr19	34392481	34392577	7243275	0	+	0.510417	(0.485,0.523]	chr19	741719	4	EXON_MRNA	EXON_MRNA:INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1:ENST00000589985.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	19	649	2	2.78065	3.13439	3.48813	0.00375887	0.00293106	0.0395114	0.0298937
chr7	47347552	47347652	3587266	0	-	0.59	(0.58,1]	chr7	346030	8	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	3	88	2	3.03776	3.133915	3.23007	0.0271644	0.00720487	0.112113	0.0543254
chr6	158628790	158628890	3064595	0	+	0.65	(0.58,1]	chr6	297763	3	SS5_PROX	SS5_PROX:INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	4	109	2	2.22141	3.1334850000000003	4.04556	0.0545512	0.00148416	0.152588	0.0186585
chr14	34981031	34981130	5958192	0	-	0.636364	(0.58,1]	chr14	584010	85	INTRON	INTRON	SRP54-AS1	ENSG00000258704.7	ENST00000692503.1:ENST00000690110.1:ENST00000690001.1:ENST00000688072.1:ENST00000693002.1:ENST00000556355.5:ENST00000555015.5:ENST00000693259.1:ENST00000636540.1:ENST00000556705.6:ENST00000691849.1:ENST00000686430.1:ENST00000686298.1:ENST00000688866.1:ENST00000689842.1:ENST00000554945.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	2	69	2	3.03676	3.1334150000000003	3.23007	0.0271644	0.0198789	0.112113	0.100864
chr2	239339689	239339789	1392107	0	-	0.43	(0.419,0.45]	chr2	148752	152	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	87	2	3.11154	3.1331100000000003	3.15468	0.0490796	0.0211324	0.146142	0.103778
chr15	25016791	25016889	6064021	0	+	0.346939	(0.33,0.36]	chr15	595414	17	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	6	164	2	2.45189	3.13282	3.81375	0.0145567	0.0141497	0.0837469	0.0814658
chr1	204082776	204082876	322147	0	+	0.48	(0.45,0.485]	chr1	36272	42	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1:ENST00000528591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	78	2	2.84011	3.13277	3.42543	0.0648672	0.0103881	0.162218	0.0682598
chr11	65436353	65436453	4871705	0	+	0.45	(0.419,0.45]	chr11	468177	137	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	16	638	2	3.05423	3.1326549999999997	3.21108	0.0113624	0.00204331	0.0723462	0.0233956
chr18	32768444	32768544	7143398	0	-	0.43	(0.419,0.45]	chr18	726510	260	INTRON	INTRON	KLHL14	ENSG00000197705.10	ENST00000359358.9:ENST00000358095.4	protein_coding	protein_coding	protein_coding	protein_coding	3	114	2	3.00342	3.13237	3.26132	0.0394801	0.0118386	0.13291	0.0746945
chr13	98403520	98403620	5636301	0	+	0.53	(0.523,0.58]	chr13	553598	72	UTR3	UTR3:EXON_MRNA:INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2	protein_coding	protein_coding	protein_coding	protein_coding	4	168	2	2.60398	3.1322200000000002	3.66046	0.0241539	0.00779316	0.112732	0.0590217
chr16	50621908	50622008	6452148	0	+	0.68	(0.58,1]	chr16	639917	2	SS5_PROX	SS5_PROX:INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	5	147	2	2.75154	3.1316949999999997	3.51185	0.0209585	0.00194298	0.0995329	0.022534
chr2	127332889	127332988	1265100	0	-	0.474747	(0.45,0.485]	chr2	136349	20	INTRON	INTRON	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5:ENST00000344908.9	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	3.03233	3.1314200000000003	3.23051	0.0362376	0.0244076	0.127941	0.113311
chr22	47114402	47114502	7748543	0	+	0.51	(0.485,0.523]	chr22	812256	24	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	78	2	3.12385	3.131235	3.13862	0.0398026	0.0193526	0.133884	0.0994526
chr21	44872453	44872553	7678567	0	-	0.51	(0.485,0.523]	chr21	802774	2	SS5_PROX	SS5_PROX:INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	443	2	2.79102	3.130595	3.47017	0.00974572	0.00417165	0.0664239	0.0418894
chr5	150512215	150512315	2565133	0	+	0.55	(0.523,0.58]	chr5	254953	36	INTRON	INTRON	NDST1	ENSG00000070614.15	ENST00000522491.1:ENST00000519157.1:ENST00000524161.1:ENST00000523767.5:ENST00000518299.1:ENST00000518346.1:ENST00000261797.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	110	2	2.48104	3.13038	3.77972	0.0313926	0.0137305	0.127822	0.0800134
chr9	14847967	14848065	4280198	0	-	0.377551	(0.36,0.39]	chr9	408991	15	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	153	2	2.44859	3.1296299999999997	3.81067	0.018663	0.015515	0.0976296	0.0849828
chr20	48932103	48932203	7490256	0	+	0.57	(0.523,0.58]	chr20	780774	97	INTRON	INTRON	ARFGEF2	ENSG00000124198.10	ENST00000371917.5:ENST00000681399.1:ENST00000679436.1:ENST00000681885.1:ENST00000681021.1:ENST00000680871.1:ENST00000681656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	104	2	2.09339	3.12951	4.16563	0.102833	0.00147865	0.197541	0.0186157
chr17	38919476	38919575	6730076	0	+	0.565657	(0.523,0.58]	chr17	676475	8	UTR3	UTR3:EXON_MRNA	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000318008.11:ENST00000435347.7	protein_coding	protein_coding	protein_coding	protein_coding	4	138	2	2.64769	3.128515	3.60934	0.0453055	0.00201082	0.14196	0.0231133
chr13	113349849	113349948	5753431	0	-	0.565657	(0.523,0.58]	chr13	564102	45	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	4	123	2	2.57213	3.12803	3.68393	0.0162664	0.0162298	0.0905283	0.0873195
chr11	68349336	68349435	4882451	0	+	0.444444	(0.419,0.45]	chr11	470548	7	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	127	2	2.93912	3.1276900000000003	3.31626	0.0344378	0.0150971	0.126025	0.0857427
chr6	3309693	3309793	3086582	0	-	0.52	(0.485,0.523]	chr6	299762	111	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000467144.5:ENST00000496753.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	123	2	2.58723	3.1267199999999997	3.66621	0.0166798	0.0158916	0.0890476	0.0884836
chrX	1398958	1399058	7830151	0	+	0.62	(0.58,1]	chrX	822059	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LINC00106	ENSG00000236871.7	ENST00000430235.7	lncRNA	lncRNA	lncRNA	lncRNA	3	91	2	2.66286	3.12669	3.59052	0.0183006	0.014012	0.0958973	0.0807513
chr7	158828019	158828114	3743025	0	-	0.421053	(0.419,0.45]	chr7	359913	5	INTRON	INTRON	ESYT2	ENSG00000117868.18	ENST00000251527.10:ENST00000275418.13:ENST00000652148.1:ENST00000497111.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	117	2	2.71246	3.1265650000000003	3.54067	0.025866	0.0223142	0.109555	0.108193
chr16	89291580	89291680	6659719	0	-	0.45	(0.419,0.45]	chr16	666642	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	146	2	2.91455	3.1262100000000004	3.33787	0.06467	0.0031515	0.162218	0.0313723
chr11	61299547	61299645	5041549	0	-	0.581633	(0.58,1]	chr11	488831	2	UTR3	UTR3:EXON_MRNA	DDB1	ENSG00000167986.15	ENST00000301764.12:ENST00000680367.1:ENST00000681803.1:ENST00000680717.1:ENST00000679712.1:ENST00000680357.1:ENST00000680075.1:ENST00000679588.1:ENST00000680602.1:ENST00000680881.1:ENST00000681188.1:ENST00000535283.6:ENST00000680452.1:ENST00000681935.1:ENST00000680250.1:ENST00000680959.1:ENST00000681815.1:ENST00000681580.1:ENST00000680345.1:ENST00000451943.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	167	2	2.49967	3.1259	3.75213	0.0269504	9.51475e-4	0.112113	0.0136675
chr21	44864696	44864795	7678485	0	-	0.555556	(0.523,0.58]	chr21	802764	29	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000474737.5:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	89	2	1.90977	3.125475	4.34118	0.0890822	0.0372357	0.184245	0.139793
chr2	179250891	179250991	1328270	0	-	0.39	(0.36,0.39]	chr2	141710	587	INTRON	INTRON	SESTD1	ENSG00000187231.14	ENST00000428443.8:ENST00000440010.5:ENST00000435047.5:ENST00000452991.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	110	2	2.98319	3.124505	3.26582	0.0369624	0.0119153	0.129594	0.0749795
chr1	150384812	150384912	242058	0	+	0.42	(0.419,0.45]	chr1	27348	195	INTRON	INTRON	RPRD2	ENSG00000163125.16	ENST00000492220.1:ENST00000369068.5:ENST00000401000.8:ENST00000369067.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	87	2	3.11129	3.12445	3.13761	0.0472779	0.023073	0.143504	0.109758
chr2	62997066	62997166	816897	0	+	0.44	(0.419,0.45]	chr2	92204	3	SS5_PROX	SS5_PROX:INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000496857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	84	2	2.68635	3.124005	3.56166	0.0876314	0.00882182	0.183437	0.061625
chr13	98246703	98246803	5634698	0	+	0.45	(0.419,0.45]	chr13	553480	15	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	7	210	2	2.08758	3.12377	4.15996	0.0660473	0.00210951	0.162385	0.0239744
chr18	58046457	58046553	7071464	0	+	0.322917	(0.29,0.33]	chr18	721084	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5:ENST00000588516.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	139	2	2.41055	3.1230700000000002	3.83559	0.0181469	0.0116959	0.0955836	0.0736916
chr16	81523886	81523986	6508532	0	+	0.55	(0.523,0.58]	chr16	645911	280	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	2.86937	3.122655	3.37594	0.0324455	0.0272868	0.130548	0.112327
chr21	44868906	44869005	7678531	0	-	0.464646	(0.45,0.485]	chr21	802773	29	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	441	2	3.0711	3.12218	3.17326	0.0089212	0.00683957	0.0637469	0.0525976
chr1	43566597	43566697	107105	0	+	0.61	(0.58,1]	chr1	13192	123	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	2.9908	3.1220600000000003	3.25332	0.0409591	0.0120565	0.136191	0.0754623
chr15	25017969	25018067	6064033	0	+	0.357143	(0.33,0.36]	chr15	595414	29	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	4	128	2	2.69649	3.12157	3.54665	0.0221637	0.0135808	0.101811	0.0811697
chr6	158328367	158328467	3061805	0	+	0.36	(0.33,0.36]	chr6	297592	137	INTRON	INTRON	ENSG00000274023:TULP4	ENSG00000274023.1:ENSG00000130338.13	ENST00000619713.1:ENST00000367097.8:ENST00000367094.6:ENST00000616856.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	3	108	2	2.27104	3.12106	3.97108	0.0834534	0.00297798	0.181107	0.0302932
chr11	65429962	65430062	4871641	0	+	0.53	(0.523,0.58]	chr11	468177	73	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	78	2725	2	2.70299	3.12098	3.53897	0.00222741	0.00203632	0.0297064	0.0233219
chr7	22138066	22138163	3547976	0	-	0.391753	(0.39,0.419]	chr7	342865	7	INTRON	INTRON	RAPGEF5	ENSG00000136237.19	ENST00000665637.1:ENST00000401957.6:ENST00000344041.10:ENST00000620335.4	protein_coding	protein_coding	protein_coding	protein_coding	2	93	2	2.7362	3.1207900000000004	3.50538	0.0461646	0.0257462	0.155334	0.109555
chr2	3459495	3459584	711028	0	+	0.516854	(0.485,0.523]	chr2	83176	7	INTRON	INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000479955.5:ENST00000497597.5:ENST00000473348.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	75	2	2.66276	3.1204	3.57804	0.0803133	0.00685872	0.177452	0.0526888
chr7	73593288	73593384	3602779	0	-	0.645833	(0.58,1]	chr7	347597	2	UTR3	UTR3:EXON_MRNA	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	276	2	2.27568	3.119735	3.96379	0.00835217	0.00265327	0.0598964	0.0326479
chr20	8607779	8607879	7431347	0	+	0.24	[0,0.29]	chr20	773703	66	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2:ENST00000628900.1:ENST00000626966.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	70	2	3.1021	3.11862	3.13514	0.0350033	0.0177985	0.12704	0.0943752
chr16	21493798	21493898	6564574	0	-	0.52	(0.485,0.523]	chr16	654775	58	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522480.5:ENST00000522841.6:ENST00000437413.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	82	2	2.85817	3.11817	3.37817	0.0334631	0.0271129	0.133139	0.112113
chr17	55314127	55314227	6757605	0	+	0.37	(0.36,0.39]	chr17	681718	248	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	110	2	2.89871	3.1181349999999997	3.33756	0.0331257	0.0144142	0.123313	0.0833845
chr11	70583929	70584029	5060112	0	-	0.64	(0.58,1]	chr11	492663	806	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	68	2	3.03676	3.117495	3.19823	0.0287301	0.0198789	0.115888	0.100864
chr16	52474235	52474335	6589130	0	-	0.52	(0.485,0.523]	chr16	658695	53	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	75	2	2.88614	3.1171300000000004	3.34812	0.0583792	0.0117752	0.155373	0.0743709
chr12	108646105	108646205	5492574	0	-	0.45	(0.419,0.45]	chr12	540315	11	UTR3	UTR3:EXON_MRNA	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6	protein_coding	protein_coding	protein_coding	protein_coding	3	114	2	2.94439	3.11685	3.28931	0.062072	0.00608778	0.15958	0.0488728
chr20	44403586	44403684	7482951	0	+	0.581633	(0.58,1]	chr20	779645	3	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	203	2	2.53953	3.11676	3.69399	0.0311563	3.50337e-4	0.120073	0.00676996
chr3	172109554	172109654	1628163	0	+	0.34	(0.33,0.36]	chr3	170535	623	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	106	2	3.08067	3.1165149999999997	3.15236	0.0461365	0.00764784	0.14307	0.0563517
chr14	19095407	19095507	5754294	0	+	0.55	(0.523,0.58]	chr14	564239	16	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000619938.1:ENST00000644980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	8	180	2	2.26237	3.11641	3.97045	0.0155803	0.0097704	0.0876334	0.0666676
chr16	50526741	50526841	6451201	0	+	0.51	(0.485,0.523]	chr16	639837	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000260573	ENSG00000260573.4	ENST00000646992.1	lncRNA	lncRNA	lncRNA	lncRNA	8	258	2	2.57505	3.116325	3.6576	0.0269609	9.53033e-4	0.112113	0.013685
chr1	44521224	44521324	113215	0	+	0.43	(0.419,0.45]	chr1	14018	1015	INTRON	INTRON	RNF220	ENSG00000187147.18	ENST00000355387.6:ENST00000361799.7:ENST00000372247.6	protein_coding	protein_coding	protein_coding	protein_coding	4	106	2	2.03846	3.115305	4.19215	0.0841278	0.0617113	0.181766	0.18013
chr6	3318474	3318574	3086670	0	-	0.62	(0.58,1]	chr6	299762	199	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000467144.5:ENST00000496753.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	66	2	3.02751	3.11483	3.20215	0.0385189	0.0136092	0.131324	0.0811697
chr7	65888047	65888146	3378207	0	+	0.424242	(0.419,0.45]	chr7	326095	141	INTRON	INTRON	VKORC1L1	ENSG00000196715.7	ENST00000360768.5:ENST00000648187.1:ENST00000648179.1:ENST00000434382.2	protein_coding	protein_coding	protein_coding	protein_coding	2	85	2	3.03039	3.113595	3.1968	0.0550674	0.0193853	0.153454	0.0994526
chr3	9468518	9468575	1402843	0	+	0.614035	(0.58,1]	chr3	150229	1	CDS	CDS:EXON_MRNA:INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000406341.5:ENST00000670063.1:ENST00000407969.5:ENST00000493918.5:ENST00000399686.6:ENST00000413704.5:ENST00000466242.5:ENST00000682236.1:ENST00000421188.1:ENST00000687014.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	121	2	2.41557	3.11342	3.81127	0.0542363	7.94461e-4	0.15176	0.0120803
chr2	127387713	127387800	1265653	0	-	0.712644	(0.58,1]	chr2	136377	4	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5	protein_coding	protein_coding	protein_coding	protein_coding	4	115	2	2.1424	3.1133550000000003	4.08431	0.0374477	0.00525202	0.139793	0.0476984
chr3	185658709	185658809	1969684	0	-	0.55	(0.523,0.58]	chr3	200340	3	SS3_PROX	SS3_PROX:INTRON	IGF2BP2	ENSG00000073792.16	ENST00000382199.7:ENST00000346192.7:ENST00000457616.6:ENST00000421047.3:ENST00000494906.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	100	2	2.9514	3.112875	3.27435	0.0321785	0.0109262	0.121593	0.0706366
chr21	38806350	38806450	7620605	0	+	0.66	(0.58,1]	chr21	796134	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ETS2	ENSG00000157557.13	ENST00000360214.8:ENST00000665212.1:ENST00000667466.1:ENST00000360938.8:ENST00000432278.5:ENST00000666778.1	protein_coding	protein_coding	protein_coding	protein_coding	3	98	2	2.32693	3.11278	3.89863	0.038688	0.00766639	0.142489	0.0583292
chr17	55314426	55314526	6757608	0	+	0.42	(0.419,0.45]	chr17	681718	251	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	86	2	3.11129	3.111415	3.11154	0.0490796	0.023073	0.146142	0.109758
chr3	23842387	23842487	1431156	0	+	0.44	(0.419,0.45]	chr3	152792	305	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	155	2	2.89067	3.111285	3.3319	0.0370948	0.00549523	0.129974	0.0454065
chr10	35416042	35416142	4476470	0	+	0.46	(0.45,0.485]	chr10	428113	208	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	79	2	3.09257	3.11099	3.12941	0.0447818	0.0199365	0.140478	0.100864
chr17	72558522	72558622	6963896	0	-	0.42	(0.419,0.45]	chr17	710389	241	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	9	322	2	2.75291	3.11083	3.46875	0.0456615	8.82125e-4	0.142336	0.0129974
chr2	78150426	78150526	1208954	0	-	0.28	[0,0.29]	chr2	130071	2102	INTRON	INTRON	ENSG00000227088	ENSG00000227088.2	ENST00000667782.1	lncRNA	lncRNA	lncRNA	lncRNA	2	70	2	2.4797	3.1105549999999997	3.74141	0.0920821	0.00417019	0.188571	0.0378966
chr6	160105775	160105874	3066704	0	+	0.454545	(0.45,0.485]	chr6	298183	8	UTR3	UTR3:EXON_MRNA:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1:ENST00000677628.1:ENST00000569097.2:ENST00000475584.1:ENST00000678224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	367	2	2.66254	3.10967	3.5568	0.024729	5.8408e-4	0.10758	0.00974635
chr7	137986164	137986264	3720564	0	-	0.43	(0.419,0.45]	chr7	357307	524	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5	protein_coding	protein_coding	protein_coding	protein_coding	3	113	2	2.86526	3.109215	3.35317	0.0344362	0.0160871	0.126025	0.0896852
chr11	96242795	96242895	5112564	0	-	0.38	(0.36,0.39]	chr11	496566	1489	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	2	87	2	2.9032	3.10862	3.31404	0.0343432	0.0337607	0.133139	0.12575
chr1	54860014	54860114	490848	0	-	0.59	(0.58,1]	chr1	58440	36	INTRON	INTRON	DHCR24	ENSG00000116133.13	ENST00000371269.9:ENST00000647912.1:ENST00000535035.6:ENST00000649769.1:ENST00000648712.1:ENST00000648728.1:ENST00000436604.2:ENST00000647585.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	72	2	2.78186	3.108555	3.43525	0.0342923	0.0187495	0.13449	0.0936297
chr19	38649658	38649758	7257860	0	+	0.63	(0.58,1]	chr19	743980	10	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	109	2	2.35718	3.108555	3.85993	0.0431826	0.00251049	0.138436	0.026941
chr13	113330179	113330278	5753232	0	-	0.606061	(0.58,1]	chr13	564094	37	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	4	120	2	3.02247	3.1082650000000003	3.19406	0.0183788	0.00474968	0.0925773	0.0413976
chr2	163688903	163689003	1295851	0	-	0.48	(0.45,0.485]	chr2	139073	767	INTRON	INTRON	FIGN	ENSG00000182263.14	ENST00000409634.5:ENST00000333129.4:ENST00000482917.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	103	2	3.09489	3.10806	3.12123	0.0428769	0.00827989	0.137868	0.0596839
chr11	65426367	65426467	4871605	0	+	0.36	(0.33,0.36]	chr11	468177	37	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000693290.1:ENST00000616315.2	lncRNA	lncRNA	lncRNA	lncRNA	52	1642	2	2.7363	3.1077950000000003	3.47929	0.0034067	0.0024687	0.0373739	0.0266286
chr16	8640266	8640357	6381022	0	+	0.56044	(0.523,0.58]	chr16	631103	2	INTRON	INTRON	METTL22	ENSG00000067365.15	ENST00000163678.11:ENST00000381920.8:ENST00000561758.5:ENST00000568967.5:ENST00000572956.5:ENST00000561993.5:ENST00000563501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	150	2	2.85567	3.1076550000000003	3.35964	0.0136981	0.01354	0.0814223	0.0793234
chr2	118109709	118109808	882908	0	+	0.333333	(0.33,0.36]	chr2	99978	15	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	INSIG2	ENSG00000125629.16	ENST00000245787.9:ENST00000485520.5:ENST00000471186.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	211	2	2.89263	3.1075600000000003	3.32249	0.0235602	0.00287876	0.104724	0.0296502
chr16	52535154	52535253	6589741	0	-	0.535354	(0.523,0.58]	chr16	658709	152	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	209	2	2.72627	3.10693	3.48759	0.0107334	0.00642662	0.0702888	0.0503748
chr11	70791147	70791247	5062193	0	-	0.48	(0.45,0.485]	chr11	492701	733	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	77	2	2.90749	3.1067	3.30591	0.0588897	0.0135996	0.15607	0.0811697
chr6	129668581	129668680	3259501	0	-	0.59596	(0.58,1]	chr6	315424	262	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	5	143	2	2.63168	3.10656	3.58144	0.0262809	0.00158507	0.110482	0.0196418
chr9	124494441	124494540	4402669	0	-	0.525253	(0.523,0.58]	chr9	419817	9	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	3.0773	3.10618	3.13506	0.0438724	0.0186841	0.139792	0.0976296
chr10	100549532	100549632	4569161	0	+	0.52	(0.485,0.523]	chr10	436105	15	UTR3	UTR3:EXON_MRNA	HIF1AN	ENSG00000166135.14	ENST00000299163.7	protein_coding	protein_coding	protein_coding	protein_coding	6	198	2	2.71871	3.10541	3.49211	0.0292882	0.00152647	0.116079	0.0191213
chr10	114434873	114434972	4762112	0	-	0.494949	(0.485,0.523]	chr10	455500	39	UTR3	UTR3:EXON_MRNA	ABLIM1	ENSG00000099204.21	ENST00000533213.7:ENST00000392955.7:ENST00000392952.7	protein_coding	protein_coding	protein_coding	protein_coding	3	100	2	2.90803	3.10534	3.30265	0.0306642	0.0122695	0.119264	0.0759225
chr19	34390895	34390995	7243259	0	+	0.56	(0.523,0.58]	chr19	741718	89	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	190	2	2.98195	3.10534	3.22873	0.0118992	0.010154	0.0741726	0.0677546
chr7	137999458	137999558	3720697	0	-	0.32	(0.29,0.33]	chr7	357307	657	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	2.9213	3.1051349999999998	3.28897	0.0537281	0.0137233	0.150759	0.0814223
chr3	172092080	172092180	1627988	0	+	0.36	(0.33,0.36]	chr3	170535	448	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	403	2	2.76767	3.10443	3.44119	0.0209813	7.89931e-4	0.0996078	0.0120519
chr20	34073735	34073818	7460411	0	+	0.614458	(0.58,1]	chr20	776613	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RALY	ENSG00000125970.12	ENST00000375114.7:ENST00000448364.5:ENST00000246194.8:ENST00000333552.9:ENST00000442805.1:ENST00000493399.1:ENST00000488227.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	65	2	2.56085	3.1038550000000003	3.64686	0.0803939	0.00447535	0.177452	0.0398484
chr12	69243680	69243779	5259926	0	+	0.464646	(0.45,0.485]	chr12	512866	36	INTRON	INTRON	CPSF6	ENSG00000111605.18	ENST00000435070.7:ENST00000550075.5:ENST00000650046.1:ENST00000456847.7:ENST00000266679.8:ENST00000550987.5:ENST00000551516.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	143	2	2.382	3.103835	3.82567	0.0199107	0.0135982	0.100864	0.079591
chr6	144631364	144631464	3023381	0	+	0.33	(0.29,0.33]	chr6	295440	474	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000367526.8	protein_coding	protein_coding	protein_coding	protein_coding	5	163	2	2.87241	3.103815	3.33522	0.0301029	0.00243919	0.117625	0.0263476
chr16	20903714	20903814	6417996	0	+	0.51	(0.485,0.523]	chr16	634694	6	INTRON	INTRON	LYRM1	ENSG00000102897.10	ENST00000568663.5:ENST00000412082.6:ENST00000439021.5:ENST00000567165.5:ENST00000569023.5:ENST00000568820.5:ENST00000562740.5:ENST00000219168.8:ENST00000567954.6:ENST00000396052.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	75	2	2.49197	3.102585	3.7132	0.10114	0.00492265	0.196131	0.0423296
chr14	56583616	56583714	5825835	0	+	0.489796	(0.485,0.523]	chr14	569604	32	INTRON	INTRON	TMEM260	ENSG00000070269.14	ENST00000556810.5:ENST00000556422.5:ENST00000261556.11:ENST00000557657.5:ENST00000555497.5:ENST00000556975.5:ENST00000557626.5:ENST00000539559.6:ENST00000538838.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	74	2	2.66276	3.1024700000000003	3.54218	0.0803133	0.00747698	0.177452	0.0555092
chr17	904952	905052	6825881	0	-	0.5	(0.485,0.523]	chr17	690055	4	SS5_PROX	SS5_PROX:INTRON	NXN	ENSG00000167693.17	ENST00000336868.8:ENST00000577098.5:ENST00000571338.1:ENST00000575171.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	74	2	2.66276	3.1024700000000003	3.54218	0.0803133	0.00747698	0.177452	0.0555092
chr17	17741850	17741950	6689454	0	+	0.5	(0.485,0.523]	chr17	671344	173	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	4	120	2	2.92695	3.1017650000000003	3.27658	0.0319818	0.00693985	0.121593	0.05314
chr20	62887506	62887604	7585184	0	-	0.55102	(0.523,0.58]	chr20	792848	4	UTR3	UTR3:EXON_MRNA:INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5	protein_coding	protein_coding	protein_coding	protein_coding	2	78	2	2.98158	3.10116	3.22074	0.0350559	0.0258432	0.12704	0.116361
chr16	89431626	89431726	6661150	0	-	0.57	(0.523,0.58]	chr16	666752	3	SS3_PROX	SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	165	2	2.71198	3.100975	3.48997	0.0408931	0.00149918	0.136191	0.0188303
chr17	39740481	39740581	6732027	0	+	0.64	(0.58,1]	chr17	676880	3	SS5_PROX	SS5_PROX:INTRON	GRB7	ENSG00000141738.14	ENST00000577695.5:ENST00000309156.9:ENST00000485182.5:ENST00000583813.1:ENST00000584819.5:ENST00000394211.7:ENST00000578702.5:ENST00000445327.6:ENST00000394209.6:ENST00000584053.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	70	2	2.84993	3.100395	3.35086	0.0297842	0.0218816	0.126591	0.101015
chr1	43982930	43983030	110991	0	+	0.6	(0.58,1]	chr1	13825	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	B4GALT2	ENSG00000117411.18	ENST00000434555.7:ENST00000372324.6:ENST00000481924.2:ENST00000497866.6:ENST00000485678.6:ENST00000356836.10:ENST00000309519.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	86	2	2.97017	3.10012	3.23007	0.0271644	0.00858469	0.112113	0.0612699
chr13	98260901	98261001	5634840	0	+	0.49	(0.485,0.523]	chr13	553480	157	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	3	113	2	2.98147	3.0996249999999996	3.21778	0.0261434	0.0157761	0.110034	0.0884237
chr6	158627907	158628007	3064586	0	+	0.58	(0.523,0.58]	chr6	297759	1	SS3_PROX	SS3_PROX:INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	6	186	2	2.94965	3.0990349999999998	3.24842	0.0165127	0.00453828	0.0880991	0.0401214
chr10	42592811	42592910	4674944	0	-	0.414141	(0.39,0.419]	chr10	445874	2	CDS	CDS:EXON_MRNA:INTRON	ZNF33B	ENSG00000196693.15	ENST00000462075.1:ENST00000486187.5:ENST00000465206.5:ENST00000613419.4:ENST00000359467.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	113	2	2.73134	3.097965	3.46459	0.0798958	0.00377182	0.177037	0.0353672
chr16	22444528	22444628	6422247	0	+	0.48	(0.45,0.485]	chr16	635236	64	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000446662.5:ENST00000381231.5:ENST00000309865.11:ENST00000691795.1:ENST00000308347.10:ENST00000687936.1:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	76	2	2.73276	3.0979599999999996	3.46316	0.0754102	0.00952494	0.173278	0.0650078
chr6	32975283	32975383	2897724	0	+	0.42	(0.419,0.45]	chr6	283734	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BRD2	ENSG00000204256.14	ENST00000374825.9:ENST00000469132.2:ENST00000679179.1:ENST00000678778.1:ENST00000449085.4:ENST00000677331.1:ENST00000456339.5:ENST00000678250.1:ENST00000677085.1:ENST00000374831.8:ENST00000495733.5:ENST00000482914.5:ENST00000679099.1:ENST00000464592.6:ENST00000607833.5:ENST00000395287.5:ENST00000449025.5:ENST00000463639.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	116	2	2.6006	3.09707	3.59354	0.0570867	0.00820853	0.154343	0.0592025
chr11	70687003	70687103	5061149	0	-	0.56	(0.523,0.58]	chr11	492688	170	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	107	2	2.79348	3.09689	3.4003	0.0358392	0.0103016	0.127853	0.0678983
chr3	124745780	124745880	1555430	0	+	0.56	(0.523,0.58]	chr3	164821	18	UTR3	UTR3:EXON_MRNA	UMPS	ENSG00000114491.14	ENST00000232607.7	protein_coding	protein_coding	protein_coding	protein_coding	3	107	2	2.79348	3.09689	3.4003	0.0358392	0.0103016	0.127853	0.0678983
chr8	127831069	127831169	3918153	0	+	0.25	[0,0.29]	chr8	374176	108	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2	lncRNA	lncRNA	lncRNA	lncRNA	2	68	2	2.96057	3.09642	3.23227	0.0442717	0.0143247	0.140478	0.0833845
chr7	135928836	135928935	3718950	0	-	0.424242	(0.419,0.45]	chr7	357211	22	UTR3	UTR3:EXON_MRNA	MTPN	ENSG00000105887.11	ENST00000393085.4	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	2.91455	3.0960400000000003	3.27753	0.06467	0.0163857	0.162218	0.0910838
chr3	66323957	66324057	1497493	0	+	0.53	(0.523,0.58]	chr3	160479	181	INTRON	INTRON	SLC25A26	ENSG00000144741.19	ENST00000676754.1:ENST00000686511.1:ENST00000690634.1:ENST00000689520.1:ENST00000686445.1:ENST00000691582.1:ENST00000691166.1:ENST00000691461.1:ENST00000354883.11:ENST00000693385.1:ENST00000688696.1:ENST00000691525.1:ENST00000690560.1:ENST00000336733.10:ENST00000464350.6:ENST00000691603.1:ENST00000483224.5:ENST00000413054.5:ENST00000484768.1:ENST00000685460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	74	2	2.918	3.095885	3.27377	0.0558053	0.0137592	0.154188	0.0814923
chr17	59938837	59938937	6769806	0	+	0.51	(0.485,0.523]	chr17	682956	19	INTRON	INTRON	RPS6KB1	ENSG00000108443.14	ENST00000393021.7:ENST00000472940.5:ENST00000225577.9:ENST00000443572.6:ENST00000406116.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	248	2	2.94065	3.09572	3.25079	0.0163875	0.00265827	0.0876058	0.0280202
chr15	24984419	24984518	6063689	0	+	0.383838	(0.36,0.39]	chr15	595387	21	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	9	307	2	2.68098	3.095185	3.50939	0.00881167	0.00753715	0.0631567	0.0559337
chr12	132741986	132742081	5539920	0	-	0.294737	(0.29,0.33]	chr12	546701	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ANKLE2	ENSG00000176915.15	ENST00000357997.10:ENST00000539605.5:ENST00000439231.6:ENST00000538591.5:ENST00000535036.5:ENST00000545623.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	73	2	2.81391	3.092995	3.37208	0.0630348	0.0113763	0.161052	0.0721226
chr1	16124531	16124628	403822	0	-	0.628866	(0.58,1]	chr1	46418	3	UTR3	UTR3:EXON_MRNA	EPHA2	ENSG00000142627.13	ENST00000358432.8	protein_coding	protein_coding	protein_coding	protein_coding	10	224	2	2.72293	3.09298	3.46303	0.00768025	0.00312018	0.0584247	0.0311915
chr7	29195879	29195976	3334301	0	+	0.360825	(0.36,0.39]	chr7	322839	5	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5:ENST00000222792.11:ENST00000409350.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	80	2	2.87382	3.0911549999999997	3.30849	0.0653866	0.0148029	0.162385	0.0847481
chr13	98279598	98279698	5635027	0	+	0.67	(0.58,1]	chr13	553480	344	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	3	91	2	2.73869	3.0901300000000003	3.44157	0.0310664	0.00760198	0.119778	0.0561937
chr1	27343472	27343572	71339	0	+	0.67	(0.58,1]	chr1	8036	2	SS5_PROX	SS5_PROX:INTRON	SYTL1	ENSG00000142765.18	ENST00000618673.4:ENST00000318074.9:ENST00000616558.5:ENST00000483926.5:ENST00000473280.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	107	2	2.342	3.08996	3.83792	0.023878	0.00865536	0.111721	0.0623824
chr3	172126372	172126472	1628333	0	+	0.42	(0.419,0.45]	chr3	170543	134	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	82	2	2.65059	3.0898199999999996	3.52905	0.0917577	0.00949141	0.188571	0.0650078
chr1	85462644	85462744	519988	0	-	0.54	(0.523,0.58]	chr1	61355	275	INTRON	INTRON	DDAH1	ENSG00000153904.21	ENST00000426972.8:ENST00000284031.13	protein_coding	protein_coding	protein_coding	protein_coding	4	120	2	2.51524	3.08961	3.66398	0.0185628	0.0167995	0.0971472	0.0884836
chr7	47380312	47380412	3587595	0	-	0.59	(0.58,1]	chr7	346036	103	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	103	2	2.6131	3.089435	3.56577	0.0146864	0.0123529	0.0826843	0.0764248
chr9	133917860	133917960	4429579	0	-	0.72	(0.58,1]	chr9	423310	561	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	64	2	2.61009	3.08915	3.56821	0.0747426	0.00550024	0.172361	0.0454065
chr14	23513718	23513811	5757090	0	+	0.602151	(0.58,1]	chr14	564961	5	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZFHX2-AS1	ENSG00000157306.14	ENST00000556354.5:ENST00000556613.1:ENST00000553985.1:ENST00000557568.1:ENST00000554403.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	64	2	2.87471	3.08872	3.30273	0.0495478	0.0107069	0.146562	0.0700635
chr20	36856880	36856980	7557070	0	-	0.53	(0.523,0.58]	chr20	789155	171	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	2.66054	3.088585	3.51663	0.0806884	0.00782908	0.177452	0.0574276
chr13	40628247	40628346	5692948	0	-	0.373737	(0.36,0.39]	chr13	558751	651	INTRON	INTRON	FOXO1	ENSG00000150907.10	ENST00000379561.6:ENST00000655267.1:ENST00000660760.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	131	2	2.50685	3.08819	3.66953	0.0216448	0.0195747	0.105793	0.0955413
chr21	34874062	34874162	7655688	0	-	0.44	(0.419,0.45]	chr21	801043	141	INTRON	INTRON	RUNX1	ENSG00000159216.19	ENST00000300305.7:ENST00000675419.1:ENST00000437180.5:ENST00000344691.8:ENST00000482318.5:ENST00000399240.5:ENST00000358356.9:ENST00000399237.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	143	2	2.85295	3.08814	3.32333	0.0703179	0.0032702	0.168159	0.0321669
chrY	19596371	19596470	8144202	0	+	0.343434	(0.33,0.36]	chrY	848372	34	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	TXLNGY	ENSG00000131002.13	ENST00000445715.6:ENST00000253320.8	transcribed_unprocessed_pseudogene	retained_intron	transcribed_unprocessed_pseudogene	retained_intron:transcribed_unprocessed_pseudogene	6	208	2	2.53641	3.08773	3.63905	0.0423589	0.00122832	0.13762	0.0164101
chr20	44403881	44403980	7482954	0	+	0.69697	(0.58,1]	chr20	779645	6	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	216	2	3.03866	3.0876900000000003	3.13672	0.0147505	0.00136353	0.0828332	0.0176851
chr9	14791755	14791852	4279620	0	-	0.329897	(0.29,0.33]	chr9	408901	23	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7:ENST00000466679.1:ENST00000497634.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	73	2	2.88638	3.087675	3.28897	0.0566203	0.0137233	0.154343	0.0814223
chr6	167941731	167941830	3074518	0	+	0.545455	(0.523,0.58]	chr6	298923	86	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000511637.5:ENST00000485634.7:ENST00000507679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	77	2	2.98158	3.0873749999999998	3.19317	0.0366207	0.0258432	0.128697	0.116361
chr17	17826491	17826590	6865788	0	-	0.575758	(0.523,0.58]	chr17	695923	25	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	2	78	2	2.92656	3.08718	3.2478	0.0335771	0.0289226	0.124319	0.124
chr16	81547580	81547680	6508769	0	+	0.62	(0.58,1]	chr16	645911	517	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	7	191	2	2.61455	3.086585	3.55862	0.0185138	0.00169503	0.0928429	0.0204875
chr2	101032944	101033043	1238902	0	-	0.414141	(0.39,0.419]	chr2	133728	1	INTRON	INTRON	TBC1D8	ENSG00000204634.13	ENST00000409318.2:ENST00000376840.8	protein_coding	protein_coding	protein_coding	protein_coding	7	246	2	2.97506	3.0865299999999998	3.198	0.0224467	0.00301592	0.102751	0.0305643
chr15	25017675	25017773	6064030	0	+	0.306122	(0.29,0.33]	chr15	595414	26	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	3	100	2	2.8506	3.08652	3.32244	0.0597166	0.00452552	0.158144	0.0400651
chr11	68350028	68350127	4882458	0	+	0.606061	(0.58,1]	chr11	470548	14	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	72	2	2.71042	3.08637	3.46232	0.0396128	0.0178328	0.143388	0.0915706
chr11	65443642	65443742	4871778	0	+	0.51	(0.485,0.523]	chr11	468177	210	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	118	3780	2	2.83988	3.08629	3.3327	0.00322237	0.00128926	0.0362983	0.0170333
chr3	51663420	51663519	1472174	0	+	0.575758	(0.523,0.58]	chr3	157989	1	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000487093.5:ENST00000432863.1:ENST00000461680.1:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	73	2	2.81323	3.086285	3.35934	0.0650388	0.0113252	0.162385	0.071894
chr3	172063922	172064022	1627706	0	+	0.46	(0.45,0.485]	chr3	170535	166	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	102	2	2.97186	3.085165	3.19847	0.0536124	0.00642738	0.150486	0.0503748
chr6	2268411	2268509	2824608	0	+	0.581633	(0.58,1]	chr6	277256	22	INTRON	INTRON	GMDS-DT	ENSG00000250903.10	ENST00000657072.1:ENST00000529893.6:ENST00000659523.1:ENST00000659643.1:ENST00000660978.1:ENST00000691004.1:ENST00000664738.1:ENST00000532124.6:ENST00000691547.1:ENST00000663428.1:ENST00000654526.1:ENST00000670895.1:ENST00000532564.8:ENST00000685772.1:ENST00000687264.1:ENST00000660533.1:ENST00000531092.6:ENST00000524770.6:ENST00000657589.1:ENST00000607519.2:ENST00000456943.6:ENST00000525811.5:ENST00000534441.5:ENST00000533653.5:ENST00000534468.1:ENST00000530346.6:ENST00000662000.1:ENST00000665610.1:ENST00000654970.1	lncRNA	lncRNA	lncRNA	lncRNA	3	85	2	3.00436	3.08501	3.16566	0.0304114	0.00785951	0.11845	0.0576181
chr11	62714111	62714210	5045884	0	-	0.59596	(0.58,1]	chr11	489786	16	UTR3	UTR3:EXON_MRNA:INTRON	HNRNPUL2-BSCL2:HNRNPUL2	ENSG00000234857.2:ENSG00000214753.4	ENST00000403734.2:ENST00000301785.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	104	2	2.48391	3.084685	3.68546	0.0170246	0.0116759	0.0923809	0.0735761
chr19	35004024	35004123	7244900	0	+	0.474747	(0.45,0.485]	chr19	742073	8	INTRON	INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	125	2	2.98123	3.08423	3.18723	0.0270875	0.019615	0.119337	0.095549
chr16	50598897	50598997	6451916	0	+	0.64	(0.58,1]	chr16	639902	403	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	87	2	2.70505	3.083685	3.46232	0.0178328	0.0165599	0.0917029	0.0915706
chr2	47336419	47336518	1141970	0	-	0.59596	(0.58,1]	chr2	124898	30	INTRON	INTRON	EPCAM-DT	ENSG00000234690.7	ENST00000448713.5:ENST00000441997.5:ENST00000419035.1:ENST00000450550.5:ENST00000413185.2	lncRNA	lncRNA	lncRNA	lncRNA	5	122	2	2.13564	3.083355	4.03107	0.0287631	0.00585987	0.123764	0.0506158
chr5	140706407	140706500	2553294	0	+	0.344086	(0.33,0.36]	chr5	253724	8	UTR3	UTR3:EXON_MRNA	ZMAT2	ENSG00000146007.11	ENST00000274712.8	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	2.8623	3.08329	3.30428	0.0634783	0.014334	0.161669	0.0833845
chr15	24986599	24986698	6063711	0	+	0.363636	(0.36,0.39]	chr15	595387	43	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	12	410	2	3.04593	3.083025	3.12012	0.0141395	0.00211477	0.0814285	0.0239744
chr17	37213076	37213175	6891322	0	-	0.494949	(0.485,0.523]	chr17	699747	22	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000612895.4:ENST00000617649.4:ENST00000614450.4:ENST00000612120.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	98	2	3.07952	3.082705	3.08589	0.0436257	0.00799823	0.139286	0.0580954
chr5	178224045	178224140	2819032	0	-	0.621053	(0.58,1]	chr5	276378	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PHYKPL	ENSG00000175309.15	ENST00000308158.10:ENST00000481436.5:ENST00000489262.5:ENST00000481811.5:ENST00000474052.5:ENST00000493197.5:ENST00000494126.6:ENST00000510991.5:ENST00000476487.5:ENST00000510913.5:ENST00000504096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	85	2	2.93515	3.08261	3.23007	0.0271644	0.00938921	0.112113	0.064735
chr2	63990404	63990504	1166742	0	-	0.48	(0.45,0.485]	chr2	127344	60	INTRON	INTRON	VPS54	ENSG00000143952.20	ENST00000409558.8:ENST00000272322.9	protein_coding	protein_coding	protein_coding	protein_coding	5	185	2	2.54017	3.082385	3.6246	0.0185243	0.0090581600000000009	0.0969609	0.0637469
chr2	237578532	237578626	1388030	0	-	0.670213	(0.58,1]	chr2	148326	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	RAB17	ENSG00000124839.13	ENST00000392001.6:ENST00000264601.8:ENST00000477149.5:ENST00000409576.1:ENST00000414278.1:ENST00000409822.1:ENST00000411462.5:ENST00000430445.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	361	2	2.75985	3.0821750000000003	3.4045	0.00845983	0.00278444	0.06064	0.0334178
chr6	16760201	16760300	3104456	0	-	0.737374	(0.58,1]	chr6	300921	2	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000473388.6:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1:ENST00000467008.5:ENST00000498374.1:ENST00000492857.1:ENST00000479680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	244	2	2.90047	3.082015	3.26356	0.0123039	0.0010057	0.0756356	0.0142602
chr6	158572419	158572519	3064019	0	+	0.64	(0.58,1]	chr6	297687	118	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	6	175	2	3.03816	3.08195	3.12574	0.0100025	0.00396764	0.0674715	0.0368027
chr2	65421465	65421565	1172070	0	-	0.5	(0.485,0.523]	chr2	127582	409	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	3	99	2	2.81013	3.08178	3.35343	0.0282341	0.0154038	0.11427	0.0869771
chr1	155318477	155318570	249886	0	+	0.451613	(0.45,0.485]	chr1	29190	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	FDPS	ENSG00000160752.15	ENST00000611010.4:ENST00000468479.5:ENST00000447866.5:ENST00000461507.5:ENST00000368356.9:ENST00000467076.5:ENST00000495308.5:ENST00000491013.5:ENST00000356657.10:ENST00000470171.5:ENST00000612683.1:ENST00000489003.5:ENST00000477057.5:ENST00000492887.5:ENST00000492244.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	118	2	3.03334	3.081375	3.12941	0.0254437	0.0199365	0.10868	0.100864
chr19	949202	949301	7185338	0	+	0.767677	(0.58,1]	chr19	730741	161	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	121	2	2.16828	3.08137	3.99446	0.0266596	0.0063152	0.118302	0.0524685
chr3	58020154	58020254	1483155	0	+	0.51	(0.485,0.523]	chr3	159572	109	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	76	2	3.02337	3.0809949999999997	3.13862	0.0398026	0.023933	0.133884	0.111785
chr2	200321154	200321253	986101	0	+	0.414141	(0.39,0.419]	chr2	108285	117	INTRON	INTRON	SPATS2L	ENSG00000196141.14	ENST00000439084.5:ENST00000409718.5:ENST00000358677.9:ENST00000409988.7:ENST00000409385.5:ENST00000439395.5:ENST00000444012.5:ENST00000451764.6:ENST00000360760.9:ENST00000423749.5:ENST00000457757.5:ENST00000471601.5:ENST00000428692.5:ENST00000453663.5:ENST00000409140.8:ENST00000459656.5:ENST00000471533.5:ENST00000409397.6:ENST00000619961.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	148	2	2.47803	3.0800549999999998	3.68208	0.0653554	0.00216425	0.162385	0.0242706
chr20	8492538	8492638	7430193	0	+	0.34	(0.33,0.36]	chr20	773698	1205	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	144	2	2.3103	3.0792349999999997	3.84817	0.0244332	0.0133365	0.113411	0.0789398
chr3	114617622	114617722	1877972	0	-	0.48	(0.45,0.485]	chr3	190879	179	INTRON	INTRON	ZBTB20	ENSG00000181722.17	ENST00000675478.1:ENST00000357258.8:ENST00000462705.5:ENST00000393785.6:ENST00000471418.5:ENST00000481632.5:ENST00000464560.5:ENST00000676079.1:ENST00000479879.5:ENST00000463890.5:ENST00000491500.5:ENST00000480832.5:ENST00000492665.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	75	2	2.73276	3.0790949999999997	3.42543	0.0754102	0.0103881	0.173278	0.0682598
chr17	66351045	66351145	6783915	0	+	0.49	(0.485,0.523]	chr17	684230	111	INTRON	INTRON	PRKCA	ENSG00000154229.12	ENST00000413366.8:ENST00000578063.5:ENST00000284384.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	105	2	2.57989	3.0786749999999996	3.57746	0.0899526	0.00224122	0.185791	0.024843
chr3	188269750	188269850	1652956	0	+	0.5	(0.485,0.523]	chr3	173754	292	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	2.85123	3.0786	3.30597	0.0614408	0.012958	0.158506	0.0778899
chr17	72528528	72528627	6963592	0	-	0.585859	(0.58,1]	chr17	710377	16	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	4	117	2	2.44544	3.0783750000000003	3.71131	0.0516128	0.00107648	0.148503	0.0148872
chr3	71566854	71566954	1831124	0	-	0.56	(0.523,0.58]	chr3	188266	234	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000650068.2:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1:ENST00000647649.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	117	2	2.80355	3.07738	3.35121	0.0284134	0.00931283	0.114906	0.0644067
chr16	89436618	89436718	6661200	0	-	0.42	(0.419,0.45]	chr16	666753	49	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	112	2	2.82113	3.076515	3.3319	0.0733896	0.00549523	0.17026	0.0454065
chr8	124673096	124673196	4064388	0	-	0.42	(0.419,0.45]	chr8	387130	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MTSS1	ENSG00000170873.19	ENST00000518547.6:ENST00000378017.7:ENST00000325064.9:ENST00000522162.1:ENST00000529463.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	113	2	2.49654	3.0759	3.65526	0.0662255	0.00712959	0.162385	0.0541241
chr13	39044369	39044464	5576134	0	+	0.389474	(0.36,0.39]	chr13	549882	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	NHLRC3	ENSG00000188811.14	ENST00000470258.5:ENST00000379599.6:ENST00000379600.8:ENST00000485407.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	146	2	2.82679	3.074795	3.3228	0.0384977	0.00534106	0.131324	0.0447342
chr2	175664355	175664455	959990	0	+	0.32	(0.29,0.33]	chr2	105443	694	INTRON	INTRON	ENSG00000289349	ENSG00000289349.1	ENST00000692740.1:ENST00000685522.1	lncRNA	lncRNA	lncRNA	lncRNA	2	72	2	2.73761	3.074755	3.4119	0.0704177	0.0103834	0.168159	0.0682598
chr20	35658529	35658629	7554090	0	-	0.47	(0.45,0.485]	chr20	788669	2	SS5_PROX	SS5_PROX:INTRON	CPNE1:RBM12	ENSG00000214078.13:ENSG00000244462.8	ENST00000352393.8:ENST00000397443.7:ENST00000483359.5:ENST00000397442.5:ENST00000401607.6:ENST00000437340.5:ENST00000430570.5:ENST00000412056.5:ENST00000414664.5:ENST00000416778.5:ENST00000439806.6:ENST00000439669.5:ENST00000420363.5:ENST00000434795.5:ENST00000440240.5:ENST00000458038.5:ENST00000437100.5:ENST00000414711.5:ENST00000435747.2:ENST00000374114.8:ENST00000359646.1:ENST00000374104.7:ENST00000424458.5:ENST00000431148.1:ENST00000435161.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	121	2	2.74393	3.073885	3.40384	0.027533	0.0115251	0.112782	0.0730057
chr17	29084315	29084414	6875943	0	-	0.535354	(0.523,0.58]	chr17	697789	15	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000529578.5:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000546105.5:ENST00000527312.5:ENST00000531438.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	77	2	2.92656	3.0736499999999998	3.22074	0.0350559	0.0289226	0.12704	0.124
chr17	48999767	48999865	6750044	0	+	0.540816	(0.523,0.58]	chr17	680301	2	INTRON	INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000510023.5:ENST00000431824.2:ENST00000515586.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	97	2	2.98195	3.0735099999999997	3.16507	0.0382777	0.010154	0.131324	0.0677546
chr16	16333984	16334084	6408913	0	+	0.63	(0.58,1]	chr16	633528	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000183889	ENSG00000183889.12	ENST00000537112.5:ENST00000381497.6:ENST00000538085.5:ENST00000534258.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	86	2	2.22208	3.07329	3.9245	0.074035	0.00209574	0.171168	0.0238576
chr7	97971734	97971834	3647668	0	-	0.51	(0.485,0.523]	chr7	351036	2	SS5_PROX	SS5_PROX:INTRON	ENSG00000284707:CCZ1P1	ENSG00000284707.2:ENSG00000243554.1	ENST00000641784.1:ENST00000641390.1:ENST00000453589.1	lncRNA	lncRNA	lncRNA:transcribed_unprocessed_pseudogene	lncRNA:transcribed_unprocessed_pseudogene	4	133	2	2.69323	3.073235	3.45324	0.042042	0.00312715	0.137338	0.0311915
chr17	72773596	72773696	6966017	0	-	0.42	(0.419,0.45]	chr17	710488	365	INTRON	INTRON	SLC39A11	ENSG00000133195.12	ENST00000255559.8:ENST00000542342.6:ENST00000582769.5:ENST00000581581.1:ENST00000579319.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	81	2	2.65059	3.073145	3.4957	0.0917577	0.0102234	0.188571	0.0678072
chr7	75934908	75935007	3396804	0	+	0.585859	(0.58,1]	chr7	328054	116	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000449920.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	67	2	2.91493	3.0725	3.23007	0.0271644	0.0259506	0.116361	0.112113
chr17	56897729	56897827	6931178	0	-	0.540816	(0.523,0.58]	chr17	706281	14	INTRON	INTRON	TRIM25	ENSG00000121060.19	ENST00000648772.1:ENST00000682766.1:ENST00000316881.9:ENST00000537230.3:ENST00000572021.6:ENST00000570473.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	99	2	2.35735	3.07245	3.78755	0.0706395	0.00401039	0.168159	0.0371192
chr8	22388756	22388855	3770236	0	+	0.474747	(0.45,0.485]	chr8	362727	89	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	4	124	2	3.06332	3.072305	3.08129	0.0467992	0.0049931	0.143232	0.0428203
chr19	51361992	51362092	7399211	0	-	0.53	(0.523,0.58]	chr19	769745	2	SS3_PROX	SS3_PROX:INTRON	ETFB:ENSG00000268520	ENSG00000105379.10:ENSG00000268520.1	ENST00000309244.9:ENST00000596253.1:ENST00000593992.1:ENST00000595500.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	2	78	2	2.86937	3.07186	3.27435	0.0324455	0.0321785	0.130548	0.121593
chr3	171786867	171786967	1958325	0	-	0.42	(0.419,0.45]	chr3	199081	156	INTRON	INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9:ENST00000498278.5:ENST00000440204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	135	2	3.05795	3.0717999999999996	3.08565	0.0529681	0.00591141	0.149208	0.0478134
chr22	50729707	50729807	7755489	0	+	0.62	(0.58,1]	chr22	812810	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2:ENST00000659388.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	104	2	2.09761	3.071585	4.04556	0.0670151	0.00148416	0.162928	0.0186585
chr1	44495836	44495936	112961	0	+	0.43	(0.419,0.45]	chr1	14018	761	INTRON	INTRON	RNF220	ENSG00000187147.18	ENST00000355387.6:ENST00000361799.7:ENST00000372247.6	protein_coding	protein_coding	protein_coding	protein_coding	3	166	2	2.52086	3.071465	3.62207	0.0683849	0.0113668	0.193274	0.0723462
chr3	58010355	58010455	1483057	0	+	0.66	(0.58,1]	chr3	159572	11	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	127	2	2.7859	3.071455	3.35701	0.0136245	0.00953031	0.0811816	0.0658012
chr8	141000679	141000779	4093138	0	-	0.69	(0.58,1]	chr8	388935	4	SS5_PROX	SS5_PROX:INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	63	2	2.79178	3.071145	3.35051	0.0565563	0.00953058	0.154343	0.0650078
chr17	315038	315138	6821426	0	-	0.54	(0.523,0.58]	chr17	689582	85	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	101	2	2.60398	3.07106	3.53814	0.0241539	0.020829	0.112732	0.0990379
chr20	44402553	44402644	7482939	0	+	0.571429	(0.523,0.58]	chr20	779638	1	CDS	CDS:EXON_MRNA:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000682427.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	525	2	2.60089	3.07071	3.54053	0.0205599	3.51159e-4	0.0982852	0.00678351
chr22	15819459	15819558	7682919	0	+	0.535354	(0.523,0.58]	chr22	803568	4	INTRON	INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000447898.5	lncRNA	lncRNA	lncRNA	lncRNA	7	203	2	2.74174	3.070485	3.39923	0.0126065	0.00617111	0.0761905	0.0492896
chrX	109688024	109688123	8091011	0	-	0.515152	(0.485,0.523]	chrX	843698	22	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000505855.1:ENST00000508092.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	317	2	2.85602	3.07009	3.28416	0.0163271	0.00141741	0.0875379	0.0181454
chr7	47471711	47471811	3588525	0	-	0.67	(0.58,1]	chr7	346123	186	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	2.9908	3.06995	3.1491	0.0409591	0.0154006	0.136191	0.0869771
chr17	55306344	55306444	6757527	0	+	0.43	(0.419,0.45]	chr17	681718	170	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	180	2	2.97053	3.069915	3.1693	0.0328064	0.00481279	0.122593	0.0417203
chr15	60494064	60494164	6284447	0	-	0.31	(0.29,0.33]	chr15	619448	59	UTR3	UTR3:EXON_MRNA	RORA	ENSG00000069667.16	ENST00000335670.11	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	2.65466	3.069895	3.48513	0.0498776	0.0216689	0.161215	0.100615
chr11	65438050	65438150	4871722	0	+	0.56	(0.523,0.58]	chr11	468177	154	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	30	986	2	2.932	3.06955	3.2071	0.00519701	0.00153042	0.0474842	0.0191213
chr14	89255909	89256009	6026657	0	-	0.51	(0.485,0.523]	chr14	591432	247	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	99	2	2.35971	3.0680050000000003	3.7763	0.0702693	0.00420211	0.168159	0.0380601
chr4	10102505	10102604	2195675	0	-	0.59596	(0.58,1]	chr4	222412	30	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	84	2	2.97017	3.067915	3.16566	0.0304114	0.00858469	0.11845	0.0612699
chr10	75727347	75727447	4523437	0	+	0.36	(0.33,0.36]	chr10	432271	794	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	175	2	2.5439	3.066325	3.58875	0.0561095	0.00141002	0.154188	0.0180659
chr17	7178084	7178116	6847857	0	-	0.46875	(0.45,0.485]	chr17	693468	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574388.5:ENST00000573596.1:ENST00000573083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	138	2	2.86104	3.066295	3.27155	0.0337719	0.00535743	0.124319	0.0448556
chr5	151806441	151806541	2567458	0	+	0.38	(0.36,0.39]	chr5	255339	10	UTR3	UTR3:EXON_MRNA:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000677923.1:ENST00000677323.1:ENST00000676715.1:ENST00000676734.1:ENST00000676878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	191	2	2.27211	3.06617	3.86023	0.0179227	0.0142826	0.0949331	0.0819292
chr17	55276183	55276283	6757220	0	+	0.42	(0.419,0.45]	chr17	681704	77	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	320	2	2.32288	3.065175	3.80747	0.0133672	0.00827235	0.0801802	0.0610772
chr5	180573787	180573887	2606411	0	+	0.4	(0.39,0.419]	chr5	259159	4	SS3_PROX	SS3_PROX:INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4	protein_coding	protein_coding	protein_coding	protein_coding	3	107	2	2.77569	3.064355	3.35302	0.032645	0.0189262	0.122541	0.0985211
chr2	239279578	239279678	1391504	0	-	0.63	(0.58,1]	chr2	148740	280	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	101	2	2.86736	3.064295	3.26123	0.0257049	0.0063518	0.109543	0.0501889
chr3	172164358	172164458	1628717	0	+	0.34	(0.33,0.36]	chr3	170559	154	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	234	2	2.58159	3.063675	3.54576	0.0106745	0.00911712	0.0700949	0.0632458
chr9	129498051	129498146	4250756	0	+	0.515789	(0.485,0.523]	chr9	404722	6	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	72	2	2.77877	3.063445	3.34812	0.0682166	0.0117752	0.164526	0.0743709
chr17	82007738	82007838	6815374	0	+	0.74	(0.58,1]	chr17	688641	35	EXON_MRNA	EXON_MRNA:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5:ENST00000578236.5:ENST00000581608.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	161	2	2.78615	3.06309	3.34003	0.0285184	0.00107594	0.115242	0.0148869
chr15	51971087	51971187	6261339	0	-	0.43	(0.419,0.45]	chr15	617018	42	INTRON	INTRON	LEO1	ENSG00000166477.13	ENST00000299601.10:ENST00000315141.5	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	3.05795	3.062255	3.06656	0.0529681	0.0252325	0.149208	0.114921
chrX	30666369	30666464	7859081	0	+	0.305263	(0.29,0.33]	chrX	824187	4	INTRON	INTRON	GK	ENSG00000198814.14	ENST00000378943.7:ENST00000378946.7:ENST00000692461.1:ENST00000427190.6:ENST00000378945.7:ENST00000481024.5:ENST00000479048.6:ENST00000487652.5:ENST00000471362.5:ENST00000378941.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	133	2	2.68626	3.0619699999999996	3.43768	0.0234876	0.00933862	0.104407	0.0645718
chr22	32820794	32820893	7717817	0	+	0.363636	(0.36,0.39]	chr22	807776	183	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	2	80	2	3.02633	3.06191	3.09749	0.0526833	0.023009	0.14912	0.109581
chr5	10743007	10743107	2612467	0	-	0.39	(0.36,0.39]	chr5	260258	84	INTRON	INTRON	DAP	ENSG00000112977.16	ENST00000230895.11:ENST00000432074.2:ENST00000514882.5:ENST00000508253.5:ENST00000510546.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	80	2	3.02633	3.06191	3.09749	0.0526833	0.023009	0.14912	0.109581
chr2	237712674	237712773	1070695	0	+	0.565657	(0.523,0.58]	chr2	115988	37	INTRON	INTRON	LRRFIP1	ENSG00000124831.19	ENST00000308482.14:ENST00000465870.5:ENST00000498053.5:ENST00000289175.10:ENST00000244815.9:ENST00000420665.5:ENST00000392000.4:ENST00000473815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	162	2	2.65789	3.061655	3.46542	0.0325488	0.00296844	0.122226	0.0302035
chr22	46291329	46291422	7743264	0	+	0.709677	(0.58,1]	chr22	811892	11	INTRON	INTRON	TTC38	ENSG00000075234.17	ENST00000381031.8:ENST00000451998.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	103	2	2.4147	3.0614749999999997	3.70825	0.020116	0.0111705	0.101405	0.0716525
chr19	2882559	2882657	7190592	0	+	0.561224	(0.523,0.58]	chr19	732053	44	UTR3	UTR3:EXON_MRNA	ZNF556	ENSG00000172000.7	ENST00000307635.3	protein_coding	protein_coding	protein_coding	protein_coding	3	98	2	2.30272	3.06041	3.8181	0.076523	0.0037097	0.174882	0.0349741
chr19	34391895	34391995	7243269	0	+	0.47	(0.45,0.485]	chr19	741718	99	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	32	1069	2	2.83619	3.0602850000000004	3.28438	0.0107415	8.16944e-4	0.0703223	0.0123483
chr22	15818588	15818684	7682910	0	+	0.53125	(0.523,0.58]	chr22	803567	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000383038.7:ENST00000447898.5:ENST00000607933.1	lncRNA	lncRNA	lncRNA	lncRNA	9	279	2	2.8433	3.05961	3.27592	0.0193047	0.00141448	0.0954446	0.018112
chr8	106725216	106725315	3902032	0	+	0.50505	(0.485,0.523]	chr8	372887	109	INTRON	INTRON	OXR1	ENSG00000164830.19	ENST00000517566.7:ENST00000531443.6:ENST00000442977.6:ENST00000435082.1:ENST00000312046.10:ENST00000519415.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	98	2	2.74097	3.05957	3.37817	0.0271129	0.0180255	0.112113	0.0952934
chr9	133914464	133914564	4429545	0	-	0.64	(0.58,1]	chr9	423310	527	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	2.91446	3.058305	3.20215	0.0464528	0.0136092	0.143232	0.0811697
chr17	38727396	38727496	6729357	0	+	0.31	(0.29,0.33]	chr17	676371	19	UTR3	UTR3:EXON_MRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5	protein_coding	protein_coding	protein_coding	protein_coding	6	186	2	1.91241	3.058205	4.204	0.0863061	3.95233e-4	0.182221	0.00741238
chr1	61101774	61101874	146295	0	+	0.34	(0.33,0.36]	chr1	17139	132	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	140	2	2.59009	3.0578149999999997	3.52554	0.0229449	0.0129005	0.102982	0.0778105
chr13	50536556	50536656	5597990	0	+	0.52	(0.485,0.523]	chr13	551685	28	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1:ENST00000484869.6	lncRNA	lncRNA	lncRNA	lncRNA	2	72	2	2.85123	3.05689	3.26255	0.0614408	0.0142848	0.158506	0.0833845
chr17	83026675	83026774	6990814	0	-	0.646465	(0.58,1]	chr17	715120	118	INTRON	INTRON	B3GNTL1	ENSG00000175711.9	ENST00000320865.4:ENST00000576599.5:ENST00000570947.5:ENST00000571954.5:ENST00000573629.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	2.91493	3.0565800000000003	3.19823	0.0287301	0.0259506	0.116361	0.115888
chr16	81549280	81549380	6508786	0	+	0.49	(0.485,0.523]	chr16	645911	534	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	4	135	2	2.99878	3.0561499999999997	3.11352	0.0253864	0.00747179	0.108573	0.0555092
chr10	3779242	3779341	4621642	0	-	0.59596	(0.58,1]	chr10	441655	34	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	KLF6	ENSG00000067082.15	ENST00000497571.6:ENST00000461124.1:ENST00000542957.1:ENST00000173785.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	85	2	2.35391	3.0556200000000002	3.75733	0.0600041	0.0033279	0.158506	0.0325742
chr14	70027443	70027543	5872657	0	+	0.61	(0.58,1]	chr14	573363	36	INTRON	INTRON	SMOC1	ENSG00000198732.11	ENST00000361956.8:ENST00000381280.4	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	2.84993	3.05558	3.26123	0.0297842	0.0257049	0.126591	0.109543
chr10	79204667	79204766	4533405	0	+	0.494949	(0.485,0.523]	chr10	432445	26	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	2.91537	3.055385	3.1954	0.0364043	0.0298565	0.128173	0.126732
chr3	48427292	48427389	1766707	0	-	0.587629	(0.58,1]	chr3	182283	16	INTRON	INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	374	2	2.90471	3.055085	3.20546	0.00827591	8.07379e-4	0.0610772	0.0122258
chr4	3369379	3369479	2005130	0	+	0.62	(0.58,1]	chr4	204663	260	INTRON	INTRON	RGS12	ENSG00000159788.20	ENST00000336727.8:ENST00000506631.5:ENST00000344733.9:ENST00000382788.7:ENST00000514268.5:ENST00000511805.5:ENST00000513784.7	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	84	2	2.91446	3.05426	3.19406	0.0464528	0.00474968	0.143232	0.0413976
chr1	61092878	61092978	146206	0	+	0.42	(0.419,0.45]	chr1	17139	43	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	132	2	2.99684	3.05419	3.11154	0.0490796	0.00732802	0.146142	0.0550721
chr20	37507618	37507716	7559844	0	-	0.489796	(0.485,0.523]	chr20	789576	38	INTRON	INTRON	BLCAP	ENSG00000166619.15	ENST00000411780.1:ENST00000467603.1	protein_coding	processed_transcript	protein_coding	processed_transcript	4	117	2	2.50272	3.05369	3.60466	0.0193199	0.0185431	0.0994526	0.0929479
chr7	75934210	75934309	3396797	0	+	0.414141	(0.39,0.419]	chr7	328054	109	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000449920.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	198	2	3.01201	3.052995	3.09398	0.0254364	0.0048616	0.108654	0.0419701
chr17	55277682	55277782	6757235	0	+	0.41	(0.39,0.419]	chr17	681704	92	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	211	2	2.82529	3.05298	3.28067	0.0287067	0.003448	0.115888	0.0334109
chr14	89267853	89267953	6026777	0	-	0.38	(0.36,0.39]	chr14	591436	34	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	126	2	2.63293	3.0520449999999997	3.47116	0.0269033	0.0163787	0.112113	0.0910838
chr1	12592800	12592899	402531	0	-	0.474747	(0.45,0.485]	chr1	46222	118	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	79	2	2.87326	3.0518850000000004	3.23051	0.0362376	0.033576	0.133139	0.127941
chr17	82586387	82586474	6817452	0	+	0.678161	(0.58,1]	chr17	689086	2	SS5_PROX	SS5_PROX:INTRON	FOXK2	ENSG00000141568.21	ENST00000473637.6:ENST00000335255.10:ENST00000575578.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	68	2	2.78186	3.05173	3.3216	0.0342923	0.0230709	0.13449	0.102982
chr17	38403300	38403399	6729059	0	+	0.555556	(0.523,0.58]	chr17	676274	39	UTR3	UTR3:EXON_MRNA	SOCS7	ENSG00000274211.6	ENST00000612932.6:ENST00000665913.1	protein_coding	protein_coding	protein_coding	protein_coding	4	131	2	2.77353	3.051505	3.32948	0.0370229	0.0042482	0.129768	0.0383564
chr3	48426903	48427000	1766703	0	-	0.608247	(0.58,1]	chr3	182283	12	INTRON	INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	114	2	2.51137	3.050945	3.59052	0.014012	0.011436	0.0807513	0.0724523
chr17	78736291	78736391	6978857	0	-	0.39	(0.36,0.39]	chr17	712624	2	SS5_PROX	SS5_PROX:INTRON	CYTH1	ENSG00000108669.17	ENST00000589296.5:ENST00000361101.8:ENST00000446868.8:ENST00000591455.5:ENST00000591574.5:ENST00000589768.5:ENST00000591095.1:ENST00000592497.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	78	2	2.87382	3.05079	3.22776	0.0653866	0.0175762	0.162385	0.0933129
chr17	17826888	17826987	6865792	0	-	0.535354	(0.523,0.58]	chr17	695923	29	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	2.918	3.050395	3.18279	0.0558053	0.0168396	0.154188	0.0919482
chr7	112204201	112204301	3692550	0	-	0.4	(0.39,0.419]	chr7	354969	1997	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	105	2	2.86732	3.050365	3.23341	0.0391493	0.01549	0.13192	0.0871517
chr11	72702283	72702343	5069930	0	-	0.7	(0.58,1]	chr11	493379	1	INTRON	INTRON	ARAP1	ENSG00000186635.15	ENST00000359373.9:ENST00000393609.8:ENST00000465814.5:ENST00000334211.12:ENST00000393605.7:ENST00000426523.5:ENST00000429686.5:ENST00000427971.6:ENST00000452383.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	62	2	2.7038	3.05028	3.39676	0.0648563	0.0085026	0.162218	0.0608246
chr9	134340532	134340632	4260828	0	+	0.63	(0.58,1]	chr9	406311	135	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	64	2	3.03676	3.0500350000000003	3.06331	0.036259	0.0198789	0.127941	0.100864
chr9	14847869	14847967	4280197	0	-	0.438776	(0.419,0.45]	chr9	408991	14	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	132	2	3.01504	3.050015	3.08499	0.0509743	0.0070144	0.148503	0.0536717
chr11	65445140	65445240	4871793	0	+	0.57	(0.523,0.58]	chr11	468177	225	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	96	2893	2	2.7461700000000002	3.049715	3.35326	0.00322766	0.00168627	0.0362983	0.0204375
chr20	32131712	32131812	7454391	0	+	0.45	(0.419,0.45]	chr20	775905	152	INTRON	INTRON	TM9SF4	ENSG00000101337.16	ENST00000398022.7:ENST00000442842.5:ENST00000450829.5:ENST00000217315.9:ENST00000417389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	80	2	2.82113	3.0493300000000003	3.27753	0.0733896	0.0163857	0.17026	0.0910838
chr19	939825	939925	7185244	0	+	0.62	(0.58,1]	chr19	730741	67	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	147	2	2.96498	3.04927	3.13356	0.0138251	0.00559148	0.0803495	0.0460395
chr16	89301062	89301149	6659818	0	-	0.37931	(0.36,0.39]	chr16	666653	1	SS3_PROX	SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	106	2	2.84128	3.04887	3.25646	0.0684007	0.00627542	0.164885	0.0499896
chr2	241668941	241669022	1078220	0	+	0.54321	(0.523,0.58]	chr2	117194	2	SS5_PROX	SS5_PROX:INTRON	ATG4B	ENSG00000168397.17	ENST00000405546.7:ENST00000402096.5:ENST00000494465.5:ENST00000404914.8:ENST00000482507.5:ENST00000344376.9:ENST00000428861.1:ENST00000460211.5:ENST00000475693.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	284	2	2.69866	3.04861	3.39856	0.0196991	0.00193758	0.0958249	0.0225083
chr15	98787899	98787998	6194725	0	+	0.454545	(0.45,0.485]	chr15	609667	30	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1:ENST00000557938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	186	2	2.95339	3.048075	3.14276	0.0211608	0.0049162	0.0996078	0.0423001
chr1	17589875	17589974	54078	0	+	0.59596	(0.58,1]	chr1	5465	10	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5	protein_coding	protein_coding	protein_coding	protein_coding	4	104	2	2.2681	3.04732	3.82654	0.0503853	0.00275362	0.148216	0.0285628
chr9	133856484	133856584	4428963	0	-	0.65	(0.58,1]	chr9	423304	218	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.79178	3.047255	3.30273	0.0565563	0.0107069	0.154343	0.0700635
chr17	76562081	76562170	6801105	0	+	0.47191	(0.45,0.485]	chr17	686388	3	INTRON	INTRON	SNHG16	ENSG00000163597.16	ENST00000661348.2:ENST00000670737.2:ENST00000653677.2:ENST00000493536.7:ENST00000667091.1:ENST00000586942.7:ENST00000586846.2:ENST00000692197.1:ENST00000448136.5:ENST00000668511.1:ENST00000590435.5:ENST00000587838.2:ENST00000686755.1	lncRNA	lncRNA	lncRNA	lncRNA	4	119	2	2.83595	3.046265	3.25658	0.0347918	0.00922973	0.126561	0.0638478
chr17	55276683	55276783	6757225	0	+	0.5	(0.485,0.523]	chr17	681704	82	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	35	922	2	2.65806	3.0462	3.43434	0.00396054	0.00273699	0.040658	0.028553
chr16	89297971	89298070	6659785	0	-	0.676768	(0.58,1]	chr16	666648	58	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	86	2	2.7038	3.0458100000000004	3.38782	0.0648563	0.00277379	0.162218	0.0287134
chr16	81542782	81542882	6508721	0	+	0.55	(0.523,0.58]	chr16	645911	469	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	3	95	2	3.04117	3.043995	3.04682	0.0459721	0.00879505	0.142664	0.0615125
chr10	100971650	100971744	4569839	0	+	0.606383	(0.58,1]	chr10	436226	14	INTRON	INTRON	SEMA4G	ENSG00000095539.15	ENST00000519649.5:ENST00000521006.5:ENST00000518124.5:ENST00000518244.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	62	2	2.83384	3.04358	3.25332	0.0529065	0.0120565	0.14912	0.0754623
chr1	89854053	89854153	181031	0	+	0.42	(0.419,0.45]	chr1	19585	70	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	3	108	2	2.88408	3.0421199999999997	3.20016	0.0674152	0.00752259	0.163486	0.0558305
chr1	16630341	16630437	406296	0	-	0.604167	(0.58,1]	chr1	46865	8	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CROCCP2	ENSG00000215908.10	ENST00000639594.1:ENST00000639456.1:ENST00000412962.4:ENST00000635081.1:ENST00000362058.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	3	84	2	2.2895	3.0409249999999997	3.79235	0.0665599	0.00302484	0.162495	0.0305643
chr17	3596221	3596319	6837116	0	-	0.55102	(0.523,0.58]	chr17	691627	5	INTRON	INTRON	TRPV1	ENSG00000196689.13	ENST00000571088.5:ENST00000572705.2	protein_coding	protein_coding	protein_coding	protein_coding	3	102	2	2.43762	3.0406899999999997	3.64376	0.0343548	0.0173955	0.134666	0.0901374
chr5	126593250	126593350	2752485	0	-	0.42	(0.419,0.45]	chr5	269798	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ALDH7A1	ENSG00000164904.18	ENST00000637782.1:ENST00000635851.1:ENST00000409134.8:ENST00000636872.1:ENST00000637206.1:ENST00000637272.1:ENST00000636886.1:ENST00000636879.1:ENST00000636808.1:ENST00000636743.1:ENST00000553117.5:ENST00000458249.6:ENST00000638008.1:ENST00000636225.1:ENST00000636062.1:ENST00000503281.6:ENST00000637964.1:ENST00000509459.6:ENST00000413020.6:ENST00000511266.6:ENST00000510111.6:ENST00000412186.2:ENST00000509270.2:ENST00000636190.1:ENST00000479989.6:ENST00000635933.1:ENST00000635858.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	79	2	2.65059	3.038585	3.42658	0.0917577	0.0119035	0.188571	0.0749304
chr13	98247603	98247703	5634707	0	+	0.57	(0.523,0.58]	chr13	553480	24	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	5	168	2	2.59975	3.0375199999999998	3.47529	0.0152448	0.0109776	0.0863685	0.0708586
chrX	109685844	109685944	8090989	0	-	0.37	(0.36,0.39]	chrX	843697	4	SS3_PROX	SS3_PROX:INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000505855.1:ENST00000508092.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	150	2	2.06507	3.037395	4.00972	0.0775018	0.0028904	0.175203	0.0297318
chr2	101032571	101032664	1238898	0	-	0.526882	(0.523,0.58]	chr2	133727	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	TBC1D8	ENSG00000204634.13	ENST00000409318.2:ENST00000376840.8:ENST00000473937.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	131	2	2.69882	3.0373799999999997	3.37594	0.0272868	0.00870551	0.112327	0.0612699
chr21	44868611	44868709	7678528	0	-	0.387755	(0.36,0.39]	chr21	802773	26	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	427	2	2.93588	3.0372500000000002	3.13862	0.0130723	0.00831242	0.0782396	0.0598672
chr6	157314083	157314183	3298432	0	-	0.63	(0.58,1]	chr6	319197	207	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	15	271	2	2.17337	3.03694	3.90051	0.0105794	0.00304568	0.0694237	0.0351341
chr19	34385896	34385996	7243209	0	+	0.5	(0.485,0.523]	chr19	741718	39	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	113	2	3.02337	3.03644	3.04951	0.023933	0.0232802	0.111785	0.103669
chr20	32477913	32478012	7543647	0	-	0.515152	(0.485,0.523]	chr20	787372	28	INTRON	INTRON	NOL4L	ENSG00000197183.15	ENST00000621426.7:ENST00000359676.9:ENST00000475781.1:ENST00000375678.7:ENST00000375677.5:ENST00000326071.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	73	2	3.02337	3.036205	3.04904	0.0457169	0.023933	0.142336	0.111785
chr17	38728196	38728296	6729365	0	+	0.51	(0.485,0.523]	chr17	676371	27	UTR3	UTR3:EXON_MRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5	protein_coding	protein_coding	protein_coding	protein_coding	8	240	2	3.02675	3.03612	3.04549	0.0171037	0.00277538	0.0894132	0.0287282
chr22	29828198	29828296	7784839	0	-	0.44898	(0.419,0.45]	chr22	816450	2	INTRON	INTRON	ASCC2	ENSG00000100325.15	ENST00000542393.5:ENST00000307790.8:ENST00000458594.5:ENST00000397771.6:ENST00000449900.6:ENST00000431535.5:ENST00000495967.5:ENST00000412689.5:ENST00000465667.6:ENST00000495681.5:ENST00000462454.1:ENST00000453160.5:ENST00000460313.1:ENST00000454854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	79	2	2.75532	3.0357900000000004	3.31626	0.0800906	0.0150971	0.177372	0.0857427
chr11	96335782	96335882	5113494	0	-	0.5	(0.485,0.523]	chr11	496566	2419	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	5	186	2	2.28384	3.03573	3.78762	0.031367	0.00610363	0.127822	0.0517132
chr11	65426966	65427066	4871611	0	+	0.42	(0.419,0.45]	chr11	468177	43	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	60	2399	2	2.76436	3.0356300000000003	3.3069	0.00556972	0.00291844	0.0493764	0.029882
chr7	47353028	47353128	3587321	0	-	0.53	(0.523,0.58]	chr7	346030	63	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	8	216	2	2.59515	3.03522	3.47529	0.0109776	0.00761379	0.0708586	0.0561937
chr20	62957247	62957340	7508268	0	+	0.666667	(0.58,1]	chr20	783175	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5:ENST00000411611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	175	2	2.27811	3.0349649999999997	3.79182	0.0351824	8.4316e-4	0.127188	0.0125984
chr7	75934608	75934708	3396801	0	+	0.61	(0.58,1]	chr7	328054	113	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000449920.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	84	2	2.38507	3.0348499999999996	3.68463	0.057029	0.00404771	0.154343	0.0371291
chr22	42646045	42646140	7821291	0	-	0.642105	(0.58,1]	chr22	820387	16	INTRON	INTRON	CYB5R3	ENSG00000100243.22	ENST00000693367.1:ENST00000352397.10:ENST00000361740.9:ENST00000692152.1:ENST00000693363.1:ENST00000689795.1:ENST00000686523.1:ENST00000407332.6:ENST00000687198.1:ENST00000689001.1:ENST00000687183.1:ENST00000691295.1:ENST00000407623.8:ENST00000402438.6:ENST00000690835.1:ENST00000689195.1:ENST00000688244.1:ENST00000690993.1:ENST00000689239.1:ENST00000692344.1:ENST00000438270.2:ENST00000686129.1:ENST00000466276.2:ENST00000693716.1:ENST00000688004.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	131	2	2.49967	3.0339400000000003	3.56821	0.0269504	0.00550024	0.112113	0.0454065
chr22	15819656	15819754	7682921	0	+	0.571429	(0.523,0.58]	chr22	803568	6	INTRON	INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000447898.5	lncRNA	lncRNA	lncRNA	lncRNA	4	115	2	2.48593	3.033625	3.58132	0.0198538	0.0193579	0.100864	0.0954964
chr17	80025500	80025600	6982171	0	-	0.7	(0.58,1]	chr17	713081	115	INTRON	INTRON	TBC1D16	ENSG00000167291.16	ENST00000310924.7	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.45703	3.03255	3.60807	0.0933945	0.00495688	0.188571	0.0425347
chr6	143061216	143061313	3013432	0	+	0.618557	(0.58,1]	chr6	294855	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	AIG1	ENSG00000146416.19	ENST00000367601.8:ENST00000447498.5:ENST00000646199.1:ENST00000357847.9:ENST00000629020.2:ENST00000275235.8:ENST00000494282.6:ENST00000367596.5	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	3.02751	3.0321350000000002	3.03676	0.0385189	0.0198789	0.131324	0.100864
chr17	82008636	82008736	6815383	0	+	0.66	(0.58,1]	chr17	688641	44	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5:ENST00000578236.5:ENST00000581608.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	180	2	2.76261	3.03124	3.29987	0.0297581	8.97729e-4	0.116461	0.0132
chr2	138567846	138567944	904558	0	+	0.377551	(0.36,0.39]	chr2	101982	25	INTRON	INTRON	SPOPL	ENSG00000144228.9	ENST00000280098.9:ENST00000420679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	125	2	2.89698	3.030615	3.16425	0.0430514	0.0088836	0.138389	0.0618405
chr13	75458974	75459074	5727774	0	-	0.51	(0.485,0.523]	chr13	561722	818	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	10	197	2	1.64427	3.030405	4.41654	0.055366	0.00423979	0.169839	0.0422099
chr17	38727996	38728096	6729363	0	+	0.56	(0.523,0.58]	chr17	676371	25	UTR3	UTR3:EXON_MRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5	protein_coding	protein_coding	protein_coding	protein_coding	5	130	2	2.65914	3.0297	3.40026	0.0262178	0.00961966	0.110264	0.0655995
chr6	1899915	1900015	3081872	0	-	0.53	(0.523,0.58]	chr6	299482	1570	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	94	2	2.98195	3.0296250000000002	3.0773	0.0438724	0.010154	0.139792	0.0677546
chr11	70586229	70586329	5060135	0	-	0.57	(0.523,0.58]	chr11	492663	829	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	129	2	2.7533	3.029415	3.30553	0.0382579	0.00452075	0.131324	0.0400651
chrX	1398324	1398424	7830144	0	+	0.52	(0.485,0.523]	chrX	822056	1	SS3_PROX	SS3_PROX:INTRON	LINC00106	ENSG00000236871.7	ENST00000434938.7:ENST00000430235.7	lncRNA	lncRNA	lncRNA	lncRNA	5	131	2	2.33315	3.0291949999999996	3.72524	0.0213218	0.0150536	0.104644	0.0840434
chr4	38678095	38678195	2030687	0	+	0.52	(0.485,0.523]	chr4	207280	133	INTRON	INTRON	KLF3	ENSG00000109787.13	ENST00000514033.1:ENST00000261438.10:ENST00000482150.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	129	2	2.55961	3.0277250000000002	3.49584	0.0519015	0.00279187	0.148503	0.0288863
chr16	81686893	81686993	6510180	0	+	0.71	(0.58,1]	chr16	645979	79	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.6577	3.0272300000000003	3.39676	0.0695799	0.0085026	0.167028	0.0608246
chr9	129496388	129496488	4250738	0	+	0.65	(0.58,1]	chr9	404717	3	SS5_PROX	SS5_PROX:INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	61	2	2.6577	3.0272300000000003	3.39676	0.0695799	0.0085026	0.167028	0.0608246
chr5	151806342	151806441	2567457	0	+	0.40404	(0.39,0.419]	chr5	255339	9	UTR3	UTR3:EXON_MRNA:INTRON	G3BP1	ENSG00000145907.16	ENST00000678964.1:ENST00000678925.1:ENST00000394123.7:ENST00000676978.1:ENST00000679289.1:ENST00000677493.1:ENST00000676644.1:ENST00000677757.1:ENST00000356245.8:ENST00000678646.1:ENST00000677381.1:ENST00000678904.1:ENST00000677923.1:ENST00000677323.1:ENST00000676715.1:ENST00000676734.1:ENST00000676878.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	173	2	2.87457	3.02721	3.17985	0.0221122	0.00939584	0.101753	0.0647754
chr19	1168874	1168964	7305741	0	-	0.711111	(0.58,1]	chr19	753057	3	UTR5	UTR5:EXON_MRNA:INTRON	SBNO2	ENSG00000064932.16	ENST00000361757.8:ENST00000587024.5:ENST00000590176.5:ENST00000587655.2	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.7038	3.027155	3.35051	0.0648563	0.00953058	0.162218	0.0650078
chr16	81668162	81668261	6509988	0	+	0.636364	(0.58,1]	chr16	645961	10	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	3	84	2	2.44544	3.026755	3.60807	0.0516128	0.00495688	0.148503	0.0425347
chr19	1415969	1416064	7187508	0	+	0.505263	(0.485,0.523]	chr19	731289	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5:ENST00000587833.5:ENST00000589484.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	96	2	2.27698	3.02664	3.7763	0.0793007	0.00420211	0.176433	0.0380601
chr17	315735	315834	6821433	0	-	0.545455	(0.523,0.58]	chr17	689582	92	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	163	2	2.67959	3.026275	3.37296	0.0132191	0.0126057	0.0786582	0.0768036
chr3	30637246	30637346	1433399	0	+	0.44	(0.419,0.45]	chr3	153006	40	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4:ENST00000673250.1:ENST00000672866.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	299	2	2.62046	3.0262450000000003	3.43203	0.015636	0.00687241	0.0850479	0.0526888
chr16	89291999	89292099	6659725	0	-	0.61	(0.58,1]	chr16	666647	2	SS3_PROX	SS3_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	175	2	2.87663	3.0258599999999998	3.17509	0.0241649	0.00132267	0.106588	0.0173138
chr13	75458574	75458674	5727770	0	-	0.33	(0.29,0.33]	chr13	561722	814	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	2	70	2	2.8506	3.025695	3.20079	0.0597166	0.01667	0.158144	0.0917029
chrX	9569540	9569640	7843495	0	+	0.59	(0.58,1]	chrX	822423	86	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	61	2	2.74846	3.025595	3.30273	0.0605281	0.0107069	0.158506	0.0700635
chr10	103597521	103597620	4756057	0	-	0.555556	(0.523,0.58]	chr10	454714	36	UTR3	UTR3:EXON_MRNA	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9	protein_coding	protein_coding	protein_coding	protein_coding	2	70	2	2.53438	3.025505	3.51663	0.0957531	0.00782908	0.189038	0.0574276
chr8	120792177	120792277	4059825	0	-	0.36	(0.33,0.36]	chr8	386607	979	INTRON	INTRON	SNTB1	ENSG00000172164.15	ENST00000395601.7:ENST00000517992.2:ENST00000648490.1:ENST00000519177.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	120	2	2.83239	3.0255	3.21861	0.0374008	0.00986194	0.130656	0.0664239
chr3	48425117	48425180	1766684	0	-	0.507937	(0.485,0.523]	chr3	182278	1	SS5_PROX	SS5_PROX:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	70	2	2.62192	3.02541	3.4289	0.0849566	0.00977282	0.181766	0.0664239
chr17	43539679	43539779	6909565	0	-	0.59	(0.58,1]	chr17	703271	28	INTRON	INTRON	ETV4	ENSG00000175832.13	ENST00000538265.5:ENST00000319349.10:ENST00000393664.6:ENST00000545954.5:ENST00000545089.5:ENST00000591713.5:ENST00000590236.5:ENST00000585508.5:ENST00000587151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	112	2	2.45956	3.02504	3.59052	0.014012	0.0130665	0.0807513	0.078517
chr2	175599272	175599372	959339	0	+	0.39	(0.36,0.39]	chr2	105443	43	INTRON	INTRON	ENSG00000289349	ENSG00000289349.1	ENST00000692740.1:ENST00000685522.1	lncRNA	lncRNA	lncRNA	lncRNA	2	77	2	2.90564	3.023935	3.14223	0.0625454	0.0209989	0.160305	0.103249
chr5	78625105	78625202	2703136	0	-	0.515464	(0.485,0.523]	chr5	266654	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	LHFPL2	ENSG00000145685.14	ENST00000380345.7:ENST00000503686.5:ENST00000512759.5:ENST00000515349.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	70	2	2.57989	3.0237749999999997	3.46766	0.0899526	0.0089247	0.185791	0.0620271
chr13	113328185	113328285	5753212	0	-	0.65	(0.58,1]	chr13	564094	17	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	2.91493	3.023635	3.13234	0.0322188	0.0259506	0.121593	0.116361
chr11	68353885	68353984	4882497	0	+	0.676768	(0.58,1]	chr11	470548	53	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	62	2	2.95313	3.023575	3.09402	0.0435972	0.0174733	0.139245	0.0928044
chr6	98921202	98921301	3207947	0	-	0.444444	(0.419,0.45]	chr6	311438	31	INTRON	INTRON	FBXL4	ENSG00000112234.9	ENST00000369244.7:ENST00000229971.2	protein_coding	protein_coding	protein_coding	protein_coding	4	133	2	2.22068	3.02335	3.82602	0.0755036	0.00478241	0.173479	0.0415621
chr14	34981328	34981427	5958195	0	-	0.454545	(0.45,0.485]	chr14	584010	88	INTRON	INTRON	SRP54-AS1	ENSG00000258704.7	ENST00000692503.1:ENST00000690110.1:ENST00000690001.1:ENST00000688072.1:ENST00000693002.1:ENST00000556355.5:ENST00000555015.5:ENST00000693259.1:ENST00000636540.1:ENST00000556705.6:ENST00000691849.1:ENST00000686430.1:ENST00000686298.1:ENST00000688866.1:ENST00000689842.1:ENST00000554945.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	3	97	2	2.92407	3.02265	3.12123	0.0428769	0.0124115	0.137868	0.0765738
chr17	46945092	46945191	6746934	0	+	0.616162	(0.58,1]	chr17	679541	32	INTRON	INTRON	GOSR2	ENSG00000108433.17	ENST00000640792.1:ENST00000640358.1:ENST00000573224.2:ENST00000639985.1:ENST00000639199.1:ENST00000639365.1:ENST00000638579.1:ENST00000638189.1:ENST00000639066.1:ENST00000638219.1:ENST00000639388.1:ENST00000572403.5:ENST00000640723.1:ENST00000638468.1:ENST00000639713.1:ENST00000640866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	61	2	2.79178	3.02255	3.25332	0.0565563	0.0120565	0.154343	0.0754623
chr13	97241131	97241231	5630992	0	+	0.47	(0.45,0.485]	chr13	553173	182	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	72	2	2.65647	3.0215750000000003	3.38668	0.0837071	0.0113463	0.181508	0.0719708
chr17	57467602	57467702	6761888	0	+	0.56	(0.523,0.58]	chr17	682137	225	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	154	2	2.79348	3.021525	3.24957	0.0358392	0.00291932	0.127853	0.029882
chr16	4081570	4081670	6541446	0	-	0.46	(0.45,0.485]	chr16	650517	275	INTRON	INTRON	ADCY9	ENSG00000162104.10	ENST00000294016.8:ENST00000571467.1:ENST00000572288.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	97	2	2.89353	3.0214350000000003	3.14934	0.0410767	0.0133199	0.136301	0.0799309
chr12	57152129	57152228	5240641	0	+	0.565657	(0.523,0.58]	chr12	510200	22	INTRON	INTRON	LRP1	ENSG00000123384.14	ENST00000243077.8:ENST00000554174.1	protein_coding	protein_coding	protein_coding	protein_coding	2	70	2	2.81323	3.021115	3.229	0.0650388	0.0152072	0.162385	0.0861813
chr3	48428752	48428852	1766722	0	-	0.65	(0.58,1]	chr3	182284	1	SS5_PROX	SS5_PROX:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	212	2	2.36263	3.021095	3.67956	0.00874099	0.004891	0.0613308	0.0457614
chr7	29383701	29383800	3336190	0	+	0.515152	(0.485,0.523]	chr7	322892	25	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5:ENST00000222792.11:ENST00000409350.5:ENST00000409964.6:ENST00000409922.5:ENST00000412536.5:ENST00000478128.6:ENST00000482820.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	70	2	2.5366	3.021	3.5054	0.0953348	0.00816275	0.189038	0.0589533
chr7	26212607	26212707	3331863	0	+	0.3	(0.29,0.33]	chr7	322631	5	UTR3	UTR3:EXON_MRNA	CBX3	ENSG00000122565.19	ENST00000337620.8:ENST00000396386.7:ENST00000409747.5	protein_coding	protein_coding	protein_coding	protein_coding	6	147	2	2.67832	3.0208899999999996	3.36346	0.026605	0.00759671	0.111446	0.0561937
chr20	8429652	8429752	7429564	0	+	0.28	[0,0.29]	chr20	773698	576	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	64	2	2.71826	3.020765	3.32327	0.0648743	0.0116239	0.162218	0.0735563
chr17	75805656	75805756	6800349	0	+	0.61	(0.58,1]	chr17	686178	116	INTRON	INTRON	UNK	ENSG00000132478.10	ENST00000589666.6:ENST00000592629.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	63	2	2.97713	3.02022	3.06331	0.036259	0.0226795	0.127941	0.108193
chr7	74499002	74499102	3391817	0	+	0.62	(0.58,1]	chr7	327343	445	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.97713	3.02022	3.06331	0.036259	0.0226795	0.127941	0.108193
chr13	41879408	41879508	5699275	0	-	0.41	(0.39,0.419]	chr13	559222	106	INTRON	INTRON	VWA8	ENSG00000102763.18	ENST00000379310.8:ENST00000281496.6	protein_coding	protein_coding	protein_coding	protein_coding	3	103	2	2.80688	3.0201450000000003	3.23341	0.0391493	0.0176876	0.13192	0.093839
chr19	946010	946109	7185306	0	+	0.636364	(0.58,1]	chr19	730741	129	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	89	2	2.78615	3.019735	3.25332	0.0285184	0.0120565	0.115242	0.0754623
chr17	77467858	77467958	6805057	0	+	0.51	(0.485,0.523]	chr17	686810	9	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	94	2	2.95352	3.019705	3.08589	0.0528263	0.00799823	0.14912	0.0580954
chr13	50727288	50727388	5599909	0	+	0.37	(0.36,0.39]	chr13	551734	9	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000652753.1:ENST00000650996.1	lncRNA	lncRNA	lncRNA	lncRNA	3	104	2	2.29302	3.0192449999999997	3.74547	0.0842628	0.00550271	0.181766	0.0454065
chr2	235515630	235515730	1062752	0	+	0.4	(0.39,0.419]	chr2	115651	204	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	77	2	2.89795	3.01912	3.14029	0.0636416	0.0211243	0.161669	0.103778
chr11	65422972	65423072	4871571	0	+	0.64	(0.58,1]	chr11	468177	3	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000612303.2:ENST00000670617.1	lncRNA	lncRNA	lncRNA	lncRNA	152	3913	2	2.7694	3.0189000000000004	3.2684	0.00192723	9.37858e-4	0.0275437	0.0135546
chr18	28139983	28140083	7140274	0	-	0.46	(0.45,0.485]	chr18	726157	424	INTRON	INTRON	CDH2	ENSG00000170558.10	ENST00000269141.8:ENST00000676445.1:ENST00000675708.1:ENST00000430882.6:ENST00000413878.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	151	2	2.65944	3.0189	3.37836	0.022472	0.0140748	0.108193	0.0811028
chr3	172054636	172054736	1627613	0	+	0.56	(0.523,0.58]	chr3	170535	73	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	71	2	2.9513	3.0184949999999997	3.08569	0.0531089	0.020773	0.149478	0.102713
chr19	954289	954389	7185389	0	+	0.62	(0.58,1]	chr19	730741	212	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	84	2	2.57459	3.0184550000000003	3.46232	0.0224622	0.0178328	0.108193	0.0915706
chr2	147869442	147869542	912724	0	+	0.39	(0.36,0.39]	chr2	102442	239	INTRON	INTRON	ACVR2A	ENSG00000121989.15	ENST00000535787.5:ENST00000487959.5:ENST00000462659.1:ENST00000404590.1:ENST00000241416.12:ENST00000465329.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	82	2	2.79528	3.018185	3.24109	0.0413701	0.0383717	0.148333	0.131324
chr2	11622686	11622785	721129	0	+	0.555556	(0.523,0.58]	chr2	84248	13	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000234142.9:ENST00000396123.2	protein_coding	protein_coding	protein_coding	protein_coding	3	96	2	2.40998	3.017125	3.62427	0.0653274	0.0060311	0.162385	0.0484641
chr9	133856783	133856883	4428966	0	-	0.46	(0.45,0.485]	chr9	423304	221	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	2	82	2	2.62955	3.0166950000000003	3.40384	0.0530416	0.027533	0.167062	0.112782
chr20	36859972	36860071	7557101	0	-	0.464646	(0.45,0.485]	chr20	789159	2	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	2.76944	3.016605	3.26377	0.0716626	0.0149252	0.168159	0.0848525
chr9	124334898	124334997	4236280	0	+	0.606061	(0.58,1]	chr9	402147	71	INTRON	INTRON	NEK6	ENSG00000119408.17	ENST00000373603.5:ENST00000540326.5:ENST00000320246.10:ENST00000373600.7:ENST00000545174.5:ENST00000444973.5:ENST00000454453.5:ENST00000425237.5:ENST00000546191.5:ENST00000422297.5:ENST00000539416.5:ENST00000394199.6	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	2.71042	3.01601	3.3216	0.0396128	0.0230709	0.143388	0.102982
chr8	133290714	133290813	4084232	0	-	0.484848	(0.45,0.485]	chr8	388356	19	INTRON	INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1:ENST00000674839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	90	2	1.91755	3.0160050000000003	4.11446	0.0909968	0.0592571	0.187565	0.176157
chr11	61273998	61274098	5041319	0	-	0.61	(0.58,1]	chr11	488768	1	SS5_PROX	SS5_PROX:INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	140	2	2.64367	3.01589	3.38811	0.0114303	0.008949	0.0724212	0.0637469
chr17	55322151	55322249	6757691	0	+	0.357143	(0.33,0.36]	chr17	681735	14	UTR3	UTR3:EXON_MRNA	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000573945.5:ENST00000575345.5	protein_coding	protein_coding	protein_coding	protein_coding	9	275	2	2.20622	3.015285	3.82435	0.0491615	7.33096e-4	0.146142	0.0114244
chr2	121479518	121479618	1262521	0	-	0.32	(0.29,0.33]	chr2	136083	92	INTRON	INTRON	CLASP1	ENSG00000074054.20	ENST00000263710.8:ENST00000397587.7:ENST00000541377.5:ENST00000409078.8:ENST00000455322.6:ENST00000452274.6:ENST00000430234.5:ENST00000418989.5:ENST00000449975.1:ENST00000474065.5:ENST00000480007.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	69	2	2.69789	3.0145049999999998	3.33112	0.0745282	0.0124843	0.172224	0.0765738
chr3	38378359	38378455	1445827	0	+	0.5625	(0.523,0.58]	chr3	154249	10	INTRON	INTRON	XYLB	ENSG00000093217.11	ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1:ENST00000472721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	100	2	2.66944	3.0143899999999997	3.35934	0.0437689	0.0113252	0.139708	0.071894
chr8	140999781	140999881	4093129	0	-	0.36	(0.33,0.36]	chr8	388934	153	INTRON	INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	73	2	2.68323	3.01366	3.34409	0.0814187	0.0131368	0.178482	0.0788915
chr18	74497924	74498024	7088426	0	+	0.51	(0.485,0.523]	chr18	722266	3	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	CNDP2	ENSG00000133313.15	ENST00000581272.5:ENST00000580672.5:ENST00000579847.5:ENST00000583399.5:ENST00000583203.5:ENST00000582260.5:ENST00000581513.5:ENST00000580229.1:ENST00000324262.9:ENST00000577600.5:ENST00000579583.5:ENST00000584613.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	154	2	3.01094	3.013415	3.01589	0.0246577	0.00559787	0.107297	0.0460898
chr7	34724881	34724980	3572877	0	-	0.40404	(0.39,0.419]	chr7	344532	11	INTRON	INTRON	NPSR1-AS1	ENSG00000197085.11	ENST00000419766.5:ENST00000539747.5:ENST00000439852.5:ENST00000358772.8:ENST00000431669.5:ENST00000428922.5:ENST00000436945.4	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	106	2	2.50045	3.012595	3.52474	0.0632788	0.00920811	0.161606	0.0637008
chr10	100971744	100971839	4569840	0	+	0.557895	(0.523,0.58]	chr10	436226	15	INTRON	INTRON	SEMA4G	ENSG00000095539.15	ENST00000519649.5:ENST00000521006.5:ENST00000518124.5:ENST00000518244.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	93	2	2.88829	3.012345	3.1364	0.0400336	0.0126903	0.134064	0.0772455
chr1	43594680	43594779	107397	0	+	0.515152	(0.485,0.523]	chr1	13240	17	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	5	136	2	2.07403	3.012305	3.95058	0.0694692	0.00268525	0.167028	0.0282638
chr19	34391595	34391695	7243266	0	+	0.49	(0.485,0.523]	chr19	741718	96	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	20	621	2	2.83978	3.0123	3.18482	0.011305	0.00117273	0.0722887	0.0158146
chr2	54556594	54556694	799279	0	+	0.39	(0.36,0.39]	chr2	90794	280	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7	protein_coding	protein_coding	protein_coding	protein_coding	5	140	2	2.48996	3.011775	3.53359	0.024369	0.0169983	0.106628	0.0923809
chr3	71173146	71173246	1827156	0	-	0.37	(0.36,0.39]	chr3	188150	411	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648426.1:ENST00000498215.7:ENST00000484350.5:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000468577.6:ENST00000649513.1:ENST00000649431.2:ENST00000647614.1:ENST00000649760.1:ENST00000650295.1:ENST00000648895.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	142	2	2.73333	3.01173	3.29013	0.0356209	0.00963004	0.127588	0.0656623
chr11	12783229	12783329	4802734	0	+	0.5	(0.485,0.523]	chr11	460563	184	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	2	70	2	2.85123	3.011405	3.17158	0.0614408	0.017456	0.158506	0.0928044
chr11	95905361	95905461	5109688	0	-	0.44	(0.419,0.45]	chr11	496500	167	INTRON	INTRON	MTMR2	ENSG00000087053.20	ENST00000675896.1:ENST00000346299.10:ENST00000675495.1:ENST00000676272.1:ENST00000675910.1:ENST00000393223.8:ENST00000676177.1:ENST00000675022.1:ENST00000675362.1:ENST00000674974.1:ENST00000675320.1:ENST00000675174.1:ENST00000674950.1:ENST00000674989.1:ENST00000675030.1:ENST00000676388.1:ENST00000675848.1:ENST00000675652.1:ENST00000676146.1:ENST00000675922.1:ENST00000676268.1:ENST00000675024.1:ENST00000675767.1:ENST00000676432.1:ENST00000676027.1:ENST00000675196.1:ENST00000675957.1:ENST00000675981.1:ENST00000674924.1:ENST00000676166.1:ENST00000676440.1:ENST00000675454.1:ENST00000674968.1:ENST00000676378.1:ENST00000675288.1:ENST00000675636.1:ENST00000675237.1:ENST00000674528.1:ENST00000675477.1:ENST00000674901.1:ENST00000675034.1:ENST00000676393.1:ENST00000675413.1:ENST00000675933.1:ENST00000675660.1:ENST00000674610.1:ENST00000409459.5:ENST00000352297.11:ENST00000675807.1:ENST00000675489.1:ENST00000676261.1:ENST00000481642.6:ENST00000495134.6:ENST00000484818.6:ENST00000470293.6:ENST00000497683.6:ENST00000444541.7:ENST00000470011.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	80	2	3.00229	3.0113399999999997	3.02039	0.0572793	0.0276403	0.154343	0.120359
chr16	50596798	50596898	6451895	0	+	0.54	(0.523,0.58]	chr16	639902	382	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	130	2	2.24227	3.0109950000000003	3.77972	0.0259294	0.0137305	0.116361	0.0800134
chr14	19096901	19097001	5754309	0	+	0.53	(0.523,0.58]	chr14	564239	31	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000619938.1:ENST00000644980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	9	280	2	2.82941	3.01038	3.19135	0.0171993	0.00234965	0.0896971	0.0258499
chr17	72550540	72550640	6963816	0	-	0.54	(0.523,0.58]	chr17	710389	161	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	3	95	2	2.7389	3.0100350000000002	3.28117	0.072318	0.00481434	0.168347	0.041723
chr16	85586932	85587032	6518942	0	+	0.54	(0.523,0.58]	chr16	646396	302	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	2.66054	3.0099400000000003	3.35934	0.0806884	0.0113252	0.177452	0.071894
chr19	948204	948304	7185328	0	+	0.54	(0.523,0.58]	chr19	730741	151	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	69	2	2.66054	3.0099400000000003	3.35934	0.0806884	0.0113252	0.177452	0.071894
chr20	33022941	33023041	7457531	0	+	0.56	(0.523,0.58]	chr20	776432	2	SS3_PROX	SS3_PROX:INTRON	BPIFB2	ENSG00000078898.7	ENST00000170150.4	protein_coding	protein_coding	protein_coding	protein_coding	10	250	2	2.13745	3.0095099999999997	3.88157	0.0192442	0.00512545	0.0994526	0.0469989
chr20	44404177	44404275	7482957	0	+	0.428571	(0.419,0.45]	chr20	779645	9	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	364	2	2.26557	3.0089249999999996	3.75228	0.0606809	4.61857e-4	0.158506	0.00824567
chr10	28559433	28559533	4469679	0	+	0.44	(0.419,0.45]	chr10	427649	210	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	129	2	3.00229	3.0086649999999997	3.01504	0.0572793	0.0070144	0.154343	0.0536717
chr2	62997266	62997365	816899	0	+	0.40404	(0.39,0.419]	chr2	92205	1	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000496857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	553	2	2.72241	3.00704	3.29167	0.0201319	0.00108305	0.0973365	0.0149525
chr10	32911964	32912044	4663741	0	-	0.4375	(0.419,0.45]	chr10	445246	2	CDS	CDS:UTR3:EXON_MRNA	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000494395.1:ENST00000474568.6:ENST00000676460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	149	2	2.87641	3.00701	3.13761	0.0472779	0.00714821	0.143504	0.0541241
chr11	65504135	65504234	4871985	0	+	0.414141	(0.39,0.419]	chr11	468193	66	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000616527.4:ENST00000620465.4:ENST00000612781.1:ENST00000618132.1	lncRNA	lncRNA	lncRNA	lncRNA	156	4186	2	2.68237	3.00692	3.33147	0.00470595	0.00263955	0.0448308	0.0279421
chr16	81543282	81543382	6508726	0	+	0.54	(0.523,0.58]	chr16	645911	474	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	4	130	2	2.94384	3.00687	3.0699	0.0279362	0.00819703	0.113476	0.0591729
chr6	36679239	36679339	2906381	0	+	0.63	(0.58,1]	chr6	285234	3	SS5_PROX	SS5_PROX:INTRON	CDKN1A	ENSG00000124762.14	ENST00000615513.4:ENST00000448526.6:ENST00000459970.1:ENST00000405375.5:ENST00000244741.10:ENST00000373711.3:ENST00000478800.1:ENST00000462537.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	111	2	2.63329	3.006415	3.37954	0.0207688	0.00829614	0.098873	0.0597702
chr20	8463245	8463345	7429900	0	+	0.36	(0.33,0.36]	chr20	773698	912	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	135	2	2.42442	3.006195	3.58797	0.0207035	0.018933	0.0986463	0.0985531
chr14	68901679	68901778	5999358	0	-	0.50505	(0.485,0.523]	chr14	588711	5	EXON_MRNA	EXON_MRNA:INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682522.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000684182.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6:ENST00000683261.1:ENST00000684096.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	98	2	2.58276	3.00583	3.4289	0.0500643	0.00977282	0.147892	0.0664239
chr9	121332603	121332683	4230880	0	+	0.6125	(0.58,1]	chr9	401701	1	UTR3	UTR3:EXON_MRNA	GSN	ENSG00000148180.21	ENST00000373823.7:ENST00000373808.8:ENST00000432226.7:ENST00000449733.7:ENST00000394353.7:ENST00000545652.6:ENST00000373818.8:ENST00000373806.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	246	2	2.47457	3.004995	3.53542	0.0186711	0.00181405	0.0934313	0.0215865
chr2	120258328	120258428	887755	0	+	0.58	(0.523,0.58]	chr2	100428	42	INTRON	INTRON	RALB	ENSG00000144118.14	ENST00000447591.5:ENST00000420510.5:ENST00000431732.5:ENST00000272519.10:ENST00000631312.2:ENST00000470417.1:ENST00000412383.5:ENST00000449649.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	93	2	2.88392	3.004805	3.12569	0.0586821	0.00713962	0.155604	0.0541241
chr15	24986401	24986500	6063709	0	+	0.343434	(0.33,0.36]	chr15	595387	41	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	5	161	2	2.88453	3.004705	3.12488	0.0329759	0.00479514	0.122904	0.0416285
chr3	48424419	48424511	1766675	0	-	0.641304	(0.58,1]	chr3	182272	11	CDS	CDS:EXON_MRNA:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000456774.5:ENST00000449094.5:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	106	2	2.48127	3.004245	3.52722	0.0346335	0.00611467	0.126423	0.0489549
chr9	83537284	83537384	4325924	0	-	0.59	(0.58,1]	chr9	413150	697	INTRON	INTRON	FRMD3	ENSG00000172159.16	ENST00000376438.5:ENST00000304195.8	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.6577	3.004105	3.35051	0.0695799	0.00953058	0.167028	0.0650078
chr7	75712368	75712468	3608227	0	-	0.4	(0.39,0.419]	chr7	348444	573	INTRON	INTRON	HIP1	ENSG00000127946.17	ENST00000336926.11:ENST00000434438.6:ENST00000485723.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	90	2	2.48186	3.00388	3.5259	0.0717596	0.0249241	0.199212	0.10758
chr17	81996946	81997046	6815266	0	+	0.61	(0.58,1]	chr17	688639	1	SS5_PROX	SS5_PROX:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	134	2	2.2992	3.003725	3.70825	0.0132209	0.0111705	0.0793566	0.0716525
chrX	74219424	74219524	8068455	0	-	0.54	(0.523,0.58]	chrX	841734	3	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000641360.1:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1	lncRNA	lncRNA	lncRNA	lncRNA	4	114	2	2.36236	3.0030599999999996	3.64376	0.0261999	0.0173955	0.117385	0.0901374
chr2	127302528	127302627	1264782	0	-	0.383838	(0.36,0.39]	chr2	136284	40	UTR3	UTR3:EXON_MRNA	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5	protein_coding	protein_coding	protein_coding	protein_coding	3	101	2	2.83952	3.0018849999999997	3.16425	0.0430514	0.0164335	0.138389	0.0912706
chr13	40628446	40628546	5692950	0	-	0.53	(0.523,0.58]	chr13	558751	653	INTRON	INTRON	FOXO1	ENSG00000150907.10	ENST00000379561.6:ENST00000655267.1:ENST00000660760.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	120	2	2.1168	3.001835	3.88687	0.044099	0.0113547	0.153511	0.0723462
chr7	127724499	127724599	3468961	0	+	0.42	(0.419,0.45]	chr7	335380	27	INTRON	INTRON	SND1	ENSG00000197157.11	ENST00000354725.8:ENST00000468166.5:ENST00000465900.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	175	2	2.3499	3.001635	3.65337	0.0216831	0.0173651	0.100615	0.0928044
chr15	25018264	25018362	6064036	0	+	0.265306	[0,0.29]	chr15	595414	32	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	5	139	2	2.84425	3.00123	3.15821	0.0265775	0.00343267	0.111433	0.0333354
chr2	10144146	10144244	717740	0	+	0.602041	(0.58,1]	chr2	83994	14	INTRON	INTRON	RRM2	ENSG00000171848.16	ENST00000641498.1:ENST00000646978.1:ENST00000381786.7:ENST00000642996.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	2	66	2	2.71042	3.001075	3.29173	0.0396128	0.0243429	0.143388	0.106588
chr2	91628561	91628660	1217370	0	-	0.646465	(0.58,1]	chr2	131094	101	INTRON	INTRON	LSP1P4	ENSG00000143429.11	ENST00000692025.1:ENST00000423774.3:ENST00000609777.6:ENST00000692653.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	66	2	2.71042	3.001075	3.29173	0.0396128	0.0243429	0.143388	0.106588
chr20	36855186	36855286	7557053	0	-	0.55	(0.523,0.58]	chr20	789155	154	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	3	93	2	2.75313	3.000465	3.2478	0.0335771	0.0173428	0.124319	0.0927775
chr9	14838652	14838752	4280101	0	-	0.33	(0.29,0.33]	chr9	408973	133	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	94	2	2.6122	3.0004150000000003	3.38863	0.0255093	0.0243218	0.113231	0.108923
chr19	18593316	18593397	7348769	0	-	0.617284	(0.58,1]	chr19	761570	2	UTR3	UTR3:EXON_MRNA:INTRON	CRLF1	ENSG00000006016.12	ENST00000594325.1:ENST00000684169.1:ENST00000392386.8:ENST00000596360.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	151	2	2.72392	3.00007	3.27622	0.0112073	0.00649317	0.0718473	0.0504512
chr14	39085561	39085661	5967670	0	-	0.42	(0.419,0.45]	chr14	584639	4	SS5_PROX	SS5_PROX:INTRON	SEC23A	ENSG00000100934.15	ENST00000307712.11:ENST00000537403.5:ENST00000545328.6	protein_coding	protein_coding	protein_coding	protein_coding	5	186	2	2.89307	2.999105	3.10514	0.0273741	0.00938681	0.112406	0.064735
chr17	44109928	44110028	6910965	0	-	0.62	(0.58,1]	chr17	703517	157	INTRON	INTRON	HDAC5	ENSG00000108840.16	ENST00000225983.10:ENST00000682912.1:ENST00000336057.9:ENST00000586802.5:ENST00000588703.5:ENST00000587135.1:ENST00000591714.5	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	2.38295	2.9989	3.61485	0.0730701	0.0133763	0.199669	0.0790342
chr16	85442214	85442314	6517493	0	+	0.51	(0.485,0.523]	chr16	646391	829	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	83	2	2.45723	2.9988	3.54037	0.0700289	0.0206875	0.195209	0.0985914
chr17	55273584	55273684	6757194	0	+	0.6	(0.58,1]	chr17	681704	51	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	157	2	2.55809	2.998405	3.43872	0.0241278	0.00239935	0.106588	0.0261006
chr9	114074652	114074721	4373775	0	-	0.42029	(0.419,0.45]	chr9	418050	1	SS5_PROX	SS5_PROX:INTRON	AMBP	ENSG00000106927.12	ENST00000265132.8:ENST00000540645.5:ENST00000466610.6:ENST00000603230.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	78	2	2.88408	2.9976849999999997	3.11129	0.0674152	0.023073	0.163486	0.109758
chr14	19304214	19304314	5928404	0	-	0.5	(0.485,0.523]	chr14	580403	2	SS3_PROX	SS3_PROX:INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	10	242	2	2.43217	2.99689	3.56161	0.00936441	0.00932814	0.0649777	0.0646835
chr1	12581563	12581663	402418	0	-	0.48	(0.45,0.485]	chr1	46222	5	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	76	2	2.81608	2.996495	3.17691	0.0393744	0.0375071	0.139823	0.132578
chr11	68330774	68330874	4882265	0	+	0.64	(0.58,1]	chr11	470542	176	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	87	2	2.73869	2.9960050000000003	3.25332	0.0310664	0.0120565	0.119778	0.0754623
chr2	186164042	186164142	1338944	0	-	0.48	(0.45,0.485]	chr2	142313	9	INTRON	INTRON	LINC01473	ENSG00000237877.7	ENST00000658984.1:ENST00000658990.1:ENST00000655126.1:ENST00000667839.1:ENST00000670612.1:ENST00000668985.1:ENST00000661574.1:ENST00000666677.1:ENST00000665629.1:ENST00000671116.1:ENST00000419719.2:ENST00000667056.1:ENST00000671599.1	lncRNA	lncRNA	lncRNA	lncRNA	3	97	2	2.65944	2.995765	3.33209	0.0308842	0.022472	0.119556	0.108193
chr16	81628288	81628388	6509580	0	+	0.62	(0.58,1]	chr16	645926	62	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	4	99	2	2.09761	2.995095	3.89258	0.0670151	0.00229214	0.162928	0.0253494
chr9	14837954	14838054	4280094	0	-	0.43	(0.419,0.45]	chr9	408973	126	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	127	2	2.39114	2.99463	3.59812	0.0285497	0.023651	0.123177	0.105002
chr17	57440489	57440589	6761615	0	+	0.46	(0.45,0.485]	chr17	682129	80	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	135	2	2.83887	2.9941050000000002	3.14934	0.0410767	0.00659911	0.136301	0.0512269
chr20	3492395	3492495	7419775	0	+	0.44	(0.419,0.45]	chr20	772906	205	INTRON	INTRON	ATRN	ENSG00000088812.18	ENST00000262919.10:ENST00000446916.2	protein_coding	protein_coding	protein_coding	protein_coding	3	105	2	2.67985	2.99391	3.30797	0.0368429	0.0238876	0.129203	0.111747
chr7	47350042	47350141	3587291	0	-	0.50505	(0.485,0.523]	chr7	346030	33	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	4	126	2	2.69323	2.993295	3.29336	0.042042	0.00474748	0.137338	0.0413976
chr11	65443243	65443343	4871774	0	+	0.55	(0.523,0.58]	chr11	468177	206	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	55	1707	2	2.76768	2.9932499999999997	3.21882	0.00447034	0.00187095	0.0435829	0.0219434
chr11	65443542	65443642	4871777	0	+	0.58	(0.523,0.58]	chr11	468177	209	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	122	3690	2	2.80738	2.9924850000000003	3.17759	0.0043961	0.00138028	0.0429852	0.01784
chr2	186213719	186213819	1339442	0	-	0.35	(0.33,0.36]	chr2	142319	347	INTRON	INTRON	LINC01473	ENSG00000237877.7	ENST00000658984.1:ENST00000658990.1:ENST00000655126.1:ENST00000667839.1:ENST00000670612.1:ENST00000668985.1:ENST00000661574.1:ENST00000666677.1:ENST00000665629.1:ENST00000419719.2:ENST00000667056.1:ENST00000671599.1	lncRNA	lncRNA	lncRNA	lncRNA	2	72	2	2.72086	2.9920999999999998	3.26334	0.0773451	0.0156643	0.175203	0.0878971
chr6	24283580	24283680	3109579	0	-	0.58	(0.523,0.58]	chr6	301418	50	INTRON	INTRON	DCDC2	ENSG00000146038.12	ENST00000378454.8	protein_coding	protein_coding	protein_coding	protein_coding	2	76	2	2.68276	2.9915950000000002	3.30043	0.0464998	0.0308549	0.156036	0.119556
chr16	8781049	8781149	6382227	0	+	0.47	(0.45,0.485]	chr16	631266	4	SS3_PROX	SS3_PROX:INTRON	ABAT	ENSG00000183044.12	ENST00000268251.13:ENST00000396600.6:ENST00000566590.5:ENST00000567812.5:ENST00000425191.6:ENST00000569156.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	102	2	2.49062	2.991035	3.49145	0.104221	0.00304799	0.19835	0.0307059
chr22	50728980	50729079	7755481	0	+	0.565657	(0.523,0.58]	chr22	812807	45	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	68	2	2.6197	2.9895199999999997	3.35934	0.0853454	0.0113252	0.181766	0.071894
chr6	37822914	37823014	2908873	0	+	0.45	(0.419,0.45]	chr6	285643	25	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	5	145	2	2.76569	2.989395	3.2131	0.0423761	0.00932915	0.13762	0.064509
chr7	155713931	155714030	3519225	0	+	0.59596	(0.58,1]	chr7	339826	21	INTRON	INTRON	RBM33	ENSG00000184863.11	ENST00000401878.8:ENST00000307403.6:ENST00000440108.5:ENST00000392761.3:ENST00000486747.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	111	2	2.94094	2.98935	3.03776	0.0214386	0.00720487	0.100405	0.0543254
chr16	81537783	81537883	6508671	0	+	0.63	(0.58,1]	chr16	645911	419	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.91493	2.9891199999999998	3.06331	0.036259	0.0259506	0.127941	0.116361
chr3	172067217	172067317	1627739	0	+	0.4	(0.39,0.419]	chr3	170535	199	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	102	2	2.14954	2.988775	3.82801	0.102803	0.0045308	0.197541	0.0400651
chr3	38473045	38473145	1446456	0	+	0.58	(0.523,0.58]	chr3	154292	183	INTRON	INTRON	ACVR2B	ENSG00000114739.14	ENST00000352511.5:ENST00000465020.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	72	2	2.86937	2.98826	3.10715	0.0418959	0.0324455	0.136901	0.130548
chr14	39084563	39084663	5967660	0	-	0.36	(0.33,0.36]	chr14	584638	81	INTRON	INTRON	SEC23A	ENSG00000100934.15	ENST00000307712.11:ENST00000537403.5:ENST00000545328.6	protein_coding	protein_coding	protein_coding	protein_coding	3	106	2	2.75385	2.98753	3.22121	0.0406145	0.0171454	0.135868	0.0923809
chr14	23516312	23516412	5757117	0	+	0.48	(0.45,0.485]	chr14	564963	15	INTRON	INTRON	ZFHX2-AS1	ENSG00000157306.14	ENST00000556354.5:ENST00000553985.1:ENST00000554403.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	117	2	2.3347	2.987375	3.64005	0.0291402	0.0186612	0.124888	0.0934138
chr16	8640176	8640266	6381021	0	+	0.555556	(0.523,0.58]	chr16	631103	1	INTRON	INTRON	METTL22	ENSG00000067365.15	ENST00000163678.11:ENST00000381920.8:ENST00000561758.5:ENST00000568967.5:ENST00000572956.5:ENST00000561993.5:ENST00000563501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	98	2	2.39285	2.987085	3.58132	0.0376513	0.0193579	0.140049	0.0954964
chr5	77767605	77767705	2697540	0	-	0.37	(0.36,0.39]	chr5	266385	524	INTRON	INTRON	TBCA	ENSG00000171530.15	ENST00000380377.9:ENST00000306388.10:ENST00000520361.5:ENST00000651106.1:ENST00000518338.6:ENST00000522370.1:ENST00000520039.1	protein_coding	protein_coding	protein_coding	protein_coding	3	102	2	2.73901	2.9863299999999997	3.23365	0.0786198	0.00662986	0.175203	0.051411
chr16	89461978	89462078	6661454	0	-	0.59	(0.58,1]	chr16	666753	303	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	60	2	2.87471	2.984365	3.09402	0.0495478	0.0174733	0.146562	0.0928044
chr22	42887943	42888042	7823003	0	-	0.676768	(0.58,1]	chr22	820583	30	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000337959.8:ENST00000263246.8:ENST00000407585.5:ENST00000403744.7:ENST00000402229.5:ENST00000634914.1	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.87471	2.984365	3.09402	0.0495478	0.0174733	0.146562	0.0928044
chr3	52294485	52294581	1473120	0	+	0.614583	(0.58,1]	chr3	158245	15	UTR3	UTR3:EXON_MRNA	GLYCTK	ENSG00000168237.18	ENST00000436784.7	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.87471	2.984365	3.09402	0.0495478	0.0174733	0.146562	0.0928044
chr15	65773674	65773774	6306079	0	-	0.43	(0.419,0.45]	chr15	621805	64	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	76	2	2.65059	2.983425	3.31626	0.0917577	0.0150971	0.188571	0.0857427
chr13	98248303	98248403	5634714	0	+	0.56	(0.523,0.58]	chr13	553480	31	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	2	77	2	2.61478	2.982995	3.35121	0.052707	0.0284134	0.167062	0.114906
chr7	47361491	47361591	3587406	0	-	0.5	(0.485,0.523]	chr7	346030	148	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.5366	2.9827500000000002	3.4289	0.0953348	0.00977282	0.189038	0.0664239
chr3	133763981	133764081	1572369	0	+	0.47	(0.45,0.485]	chr3	166740	4	SS3_PROX	SS3_PROX:INTRON	TF	ENSG00000091513.16	ENST00000402696.9	protein_coding	protein_coding	protein_coding	protein_coding	3	107	2	2.19184	2.982145	3.77245	0.0575893	0.0149038	0.17499	0.0834418
chr17	72560318	72560417	6963914	0	-	0.525253	(0.523,0.58]	chr17	710389	259	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	10	193	2	2.33962	2.98143	3.62324	0.0180195	0.0107704	0.0921579	0.070383
chrX	9567542	9567642	7843475	0	+	0.61	(0.58,1]	chrX	822423	66	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	59	2	2.6577	2.9802150000000003	3.30273	0.0695799	0.0107069	0.167028	0.0700635
chr20	33009470	33009565	7457383	0	+	0.505263	(0.485,0.523]	chr20	776365	4	INTRON	INTRON	BPIFB2	ENSG00000078898.7	ENST00000170150.4	protein_coding	protein_coding	protein_coding	protein_coding	8	246	2	2.94208	2.9794799999999997	3.01688	0.0161035	0.00386526	0.0870164	0.0361566
chr22	29828690	29828789	7784844	0	-	0.454545	(0.45,0.485]	chr22	816450	7	INTRON	INTRON	ASCC2	ENSG00000100325.15	ENST00000542393.5:ENST00000307790.8:ENST00000458594.5:ENST00000397771.6:ENST00000449900.6:ENST00000431535.5:ENST00000495967.5:ENST00000412689.5:ENST00000465667.6:ENST00000495681.5:ENST00000462454.1:ENST00000453160.5:ENST00000460313.1:ENST00000454854.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	96	2	2.25612	2.97947	3.70282	0.0844869	0.00539085	0.181766	0.0450882
chr11	70583729	70583829	5060110	0	-	0.55	(0.523,0.58]	chr11	492663	804	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	91	2	2.82229	2.9793450000000004	3.1364	0.0400336	0.014802	0.134064	0.0847481
chr16	50155158	50155258	6448413	0	+	0.39	(0.36,0.39]	chr16	639560	5	INTRON	INTRON	TENT4B	ENSG00000121274.14	ENST00000436909.8:ENST00000561678.7:ENST00000562717.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	102	2	2.57496	2.9792199999999998	3.38348	0.0308572	0.0288176	0.123783	0.119556
chr20	62887604	62887702	7585185	0	-	0.632653	(0.58,1]	chr20	792848	5	UTR3	UTR3:EXON_MRNA:INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.56085	2.978805	3.39676	0.0803939	0.0085026	0.177452	0.0608246
chr17	17822518	17822617	6865746	0	-	0.636364	(0.58,1]	chr17	695915	16	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	102	2	2.09894	2.97869	3.85844	0.0411332	0.00830865	0.147756	0.061139
chr7	47356314	47356414	3587354	0	-	0.4	(0.39,0.419]	chr7	346030	96	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	2.73134	2.97858	3.22582	0.0798958	0.0176855	0.177037	0.093839
chr2	127740452	127740552	1267010	0	-	0.55	(0.523,0.58]	chr2	136574	20	INTRON	INTRON	WDR33	ENSG00000136709.12	ENST00000322313.9:ENST00000436787.5:ENST00000393006.5	protein_coding	protein_coding	protein_coding	protein_coding	6	186	2	2.67441	2.9777899999999997	3.28117	0.0259954	0.00481434	0.109673	0.041723
chr6	130868717	130868812	3260221	0	-	0.4	(0.39,0.419]	chr6	315458	13	EXON_MRNA	EXON_MRNA:INTRON	EPB41L2	ENSG00000079819.19	ENST00000628542.2:ENST00000445890.6:ENST00000337057.8:ENST00000530481.5:ENST00000528282.5:ENST00000531410.5:ENST00000452150.6:ENST00000392427.7:ENST00000530757.5:ENST00000368128.6:ENST00000527411.5:ENST00000524581.5:ENST00000525271.5:ENST00000529208.5:ENST00000525193.5:ENST00000527659.5:ENST00000527017.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	109	2	2.29339	2.977615	3.66184	0.0501037	0.0200443	0.161731	0.0971995
chr5	27481715	27481813	2396122	0	+	0.459184	(0.45,0.485]	chr5	239123	36	INTRON	INTRON	PURPL	ENSG00000250337.8	ENST00000651409.1:ENST00000650981.1:ENST00000655107.1:ENST00000657375.2:ENST00000659077.1:ENST00000653835.1:ENST00000657173.1:ENST00000514844.6:ENST00000657424.1:ENST00000660307.1:ENST00000669423.1:ENST00000659860.1:ENST00000652841.1:ENST00000686605.1:ENST00000690628.1:ENST00000510165.6:ENST00000670554.1:ENST00000665451.1:ENST00000667624.1:ENST00000667420.1:ENST00000660639.1:ENST00000668406.1:ENST00000656783.1:ENST00000512067.5:ENST00000664566.1:ENST00000659489.1:ENST00000667264.1:ENST00000670840.1:ENST00000503107.2:ENST00000654039.1:ENST00000687778.1:ENST00000505775.5:ENST00000668103.1:ENST00000664501.1:ENST00000661698.1:ENST00000655438.1:ENST00000514255.1	lncRNA	lncRNA	lncRNA	lncRNA	16	379	2	2.34177	2.976605	3.61144	0.00939201	0.00636787	0.0647517	0.0528372
chr7	4697160	4697260	3309490	0	+	0.57	(0.523,0.58]	chr7	320808	139	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	2.918	2.976285	3.03457	0.0558053	0.0231444	0.154188	0.109883
chr1	235320616	235320716	691119	0	-	0.47	(0.45,0.485]	chr1	81362	595	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	95	2	2.6953	2.97594	3.25658	0.0347918	0.0207866	0.126561	0.102713
chr22	42987133	42987233	7824004	0	-	0.44	(0.419,0.45]	chr22	820626	274	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	193	2	2.9506	2.97594	3.00128	0.0312767	0.00596125	0.1205	0.0479866
chr9	136826506	136826596	4262674	0	+	0.611111	(0.58,1]	chr9	406661	3	INTRON	INTRON	RABL6	ENSG00000196642.19	ENST00000371671.9:ENST00000311502.12:ENST00000484471.6:ENST00000371663.10:ENST00000357466.6:ENST00000464941.5:ENST00000629216.2:ENST00000436380.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	60	2	2.91446	2.97561	3.03676	0.0464528	0.0198789	0.143232	0.100864
chr9	133854888	133854988	4428947	0	-	0.51	(0.485,0.523]	chr9	423304	202	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.77877	2.975175	3.17158	0.0682166	0.017456	0.164526	0.0928044
chr13	51414742	51414841	5715545	0	-	0.30303	(0.29,0.33]	chr13	560749	116	INTRON	INTRON	INTS6	ENSG00000102786.15	ENST00000398119.6:ENST00000311234.9:ENST00000469430.5:ENST00000497989.5:ENST00000486195.6:ENST00000491189.5:ENST00000466784.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	93	2	2.69789	2.9742300000000004	3.25057	0.0745282	0.00543459	0.172224	0.0454065
chr20	63733871	63733968	7509379	0	+	0.57732000000000006	(0.523,0.58]	chr20	783523	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000468235.1:ENST00000632538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	152	2	2.36252	2.97192	3.58132	0.0193579	0.0137297	0.0954964	0.0814223
chr6	158562629	158562729	3063921	0	+	0.49	(0.485,0.523]	chr6	297687	20	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	3	96	2	2.42548	2.9718799999999996	3.51828	0.0355127	0.0214738	0.137983	0.100517
chr16	89434821	89434921	6661182	0	-	0.53	(0.523,0.58]	chr16	666753	31	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	92	2	2.12522	2.97166	3.8181	0.0984283	0.0037097	0.192982	0.0349741
chr14	103684386	103684485	5924677	0	+	0.59596	(0.58,1]	chr14	579653	45	INTRON	INTRON	KLC1	ENSG00000126214.22	ENST00000348520.10:ENST00000380038.7:ENST00000334553.11:ENST00000389744.8:ENST00000555836.5:ENST00000347839.10:ENST00000553286.5:ENST00000557575.5:ENST00000452929.6:ENST00000554280.5:ENST00000557450.5:ENST00000554228.5:ENST00000634686.1:ENST00000246489.11:ENST00000445352.8:ENST00000537046.6:ENST00000553325.5:ENST00000555856.1:ENST00000535194.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	97	2	2.30423	2.9715	3.63877	0.0260615	0.0127766	0.116811	0.0769397
chr8	133258586	133258682	4083885	0	-	0.635417	(0.58,1]	chr8	388273	1	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000517331.5:ENST00000522377.5:ENST00000676444.1:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000517745.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	69	2	1.75577	2.970475	4.18518	0.0970527	0.0374658	0.190588	0.139793
chr1	228145081	228145174	358036	0	+	0.666667	(0.58,1]	chr1	40405	3	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GUK1	ENSG00000143774.17	ENST00000366730.5:ENST00000391865.7:ENST00000462807.5:ENST00000493209.5:ENST00000485838.5:ENST00000312726.9:ENST00000485083.5:ENST00000366726.5:ENST00000366728.6:ENST00000492871.5:ENST00000453943.5:ENST00000366723.5:ENST00000493138.5:ENST00000366722.5:ENST00000435153.5:ENST00000498092.5:ENST00000366721.5:ENST00000485733.5:ENST00000491613.1:ENST00000460224.5:ENST00000484953.1:ENST00000472939.5:ENST00000412265.5:ENST00000366718.5:ENST00000470040.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	86	2	2.73869	2.97042	3.20215	0.0310664	0.0136092	0.119778	0.0811697
chr15	24984518	24984617	6063690	0	+	0.343434	(0.33,0.36]	chr15	595387	22	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	10	195	2	1.76885	2.9680549999999997	4.16726	0.0455721	0.00760151	0.154743	0.0579698
chr1	30934742	30934842	434621	0	-	0.47	(0.45,0.485]	chr1	51446	10	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000530669.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	115	2	2.3347	2.96729	3.59988	0.0291402	0.0199597	0.124888	0.0968284
chr19	5977079	5977175	7318988	0	-	0.489583	(0.485,0.523]	chr19	755885	1	INTRON	INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5:ENST00000587956.5:ENST00000591333.5:ENST00000592266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	97	2	2.62797	2.96697	3.30597	0.0466355	0.012958	0.143232	0.0778899
chr14	89246930	89247030	6026567	0	-	0.47	(0.45,0.485]	chr14	591432	157	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	247	2	2.775	2.9666449999999998	3.15829	0.0232415	0.00285753	0.10354	0.0294352
chr7	139304436	139304536	3504698	0	+	0.39	(0.36,0.39]	chr7	337822	67	UTR3	UTR3:EXON_MRNA	UBN2	ENSG00000157741.15	ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	3	103	2	2.46174	2.96645	3.47116	0.0361885	0.0269033	0.139793	0.112113
chr1	17672886	17672986	54940	0	+	0.58	(0.523,0.58]	chr1	5603	79	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	69	2	2.9513	2.96644	2.98158	0.0531089	0.0258432	0.149478	0.116361
chr11	70788848	70788948	5062170	0	-	0.58	(0.523,0.58]	chr11	492701	710	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	69	2	2.9513	2.96644	2.98158	0.0531089	0.0258432	0.149478	0.116361
chr17	77483331	77483430	6805215	0	+	0.666667	(0.58,1]	chr17	686820	11	EXON_MRNA	EXON_MRNA:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	94	2	2.58187	2.9663649999999997	3.35086	0.0218816	0.0133635	0.101015	0.0801608
chr20	37506633	37506732	7559834	0	-	0.525253	(0.523,0.58]	chr20	789576	28	INTRON	INTRON	BLCAP	ENSG00000166619.15	ENST00000411780.1:ENST00000467603.1	protein_coding	processed_transcript	protein_coding	processed_transcript	5	132	2	2.05447	2.9658949999999997	3.87732	0.0717174	0.00318505	0.168159	0.0316631
chr19	15645218	15645318	7215406	0	+	0.51	(0.485,0.523]	chr19	737140	1	SS3_PROX	SS3_PROX:INTRON	CYP4F3	ENSG00000186529.16	ENST00000221307.13:ENST00000586182.6:ENST00000592279.6:ENST00000591058.5:ENST00000587360.1:ENST00000585846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	80	2	2.45723	2.96515	3.47307	0.0700289	0.0231672	0.195209	0.103245
chr12	50476356	50476455	5229418	0	+	0.444444	(0.419,0.45]	chr12	507700	6	UTR3	UTR3:EXON_MRNA	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000429001.7:ENST00000398473.7:ENST00000518444.5:ENST00000347328.9:ENST00000520064.2	protein_coding	protein_coding	protein_coding	protein_coding	4	142	2	2.26275	2.965075	3.6674	0.091268	0.00238608	0.188067	0.0260605
chr7	47351236	47351336	3587303	0	-	0.39	(0.36,0.39]	chr7	346030	45	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	3	102	2	2.62895	2.9649900000000002	3.30103	0.0909522	0.00563261	0.187477	0.0462941
chr6	144347799	144347899	3020488	0	+	0.41	(0.39,0.419]	chr6	295148	31	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1:ENST00000628146.2:ENST00000421035.2	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	2.8336	2.964575	3.09555	0.0695649	0.0231436	0.167028	0.109883
chr20	36860468	36860568	7557106	0	-	0.5	(0.485,0.523]	chr20	789159	7	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9	protein_coding	protein_coding	protein_coding	protein_coding	2	67	2	2.62192	2.963945	3.30597	0.0849566	0.012958	0.181766	0.0778899
chr15	67103322	67103422	6139451	0	+	0.47	(0.45,0.485]	chr15	603944	39	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1:ENST00000559092.1:ENST00000560175.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	95	2	2.25612	2.9635249999999997	3.67093	0.0844869	0.00582542	0.181766	0.0473208
chr2	158590739	158590838	936301	0	+	0.393939	(0.39,0.419]	chr2	103407	19	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000421462.5:ENST00000462335.1:ENST00000481115.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	73	2	2.6589	2.962825	3.26675	0.0879325	0.01622	0.183764	0.0902823
chr2	138567944	138568042	904559	0	+	0.387755	(0.36,0.39]	chr2	101982	26	INTRON	INTRON	SPOPL	ENSG00000144228.9	ENST00000280098.9:ENST00000420679.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	120	2	2.89698	2.9616550000000004	3.02633	0.0526833	0.0088836	0.14912	0.0618405
chr4	2824927	2825026	2000366	0	+	0.646465	(0.58,1]	chr4	203969	3	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SH3BP2	ENSG00000087266.17	ENST00000503219.5:ENST00000503393.8:ENST00000504294.5:ENST00000508385.5:ENST00000513020.5:ENST00000511663.5:ENST00000512014.5:ENST00000513095.5:ENST00000502260.5:ENST00000435136.8:ENST00000511185.5:ENST00000511747.6:ENST00000509677.5:ENST00000356331.9:ENST00000515737.5:ENST00000515183.5:ENST00000505941.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	109	2	2.72392	2.961075	3.19823	0.0287301	0.00649317	0.115888	0.0504512
chr14	23521102	23521202	5757165	0	+	0.53	(0.523,0.58]	chr14	564963	63	INTRON	INTRON	ZFHX2-AS1	ENSG00000157306.14	ENST00000556354.5:ENST00000553985.1:ENST00000554403.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	67	2	2.7389	2.960845	3.18279	0.072318	0.0168396	0.168347	0.0919482
chr8	28891584	28891659	3785494	0	+	0.453333	(0.45,0.485]	chr8	364668	1	SS3_PROX	SS3_PROX:SS5_PROX:INTRON	HMBOX1	ENSG00000147421.18	ENST00000287701.15:ENST00000558662.5:ENST00000519662.5:ENST00000397358.7:ENST00000560599.5:ENST00000523613.5:ENST00000560357.5:ENST00000521516.5:ENST00000519047.5:ENST00000560269.1:ENST00000355231.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	69	2	2.53391	2.9602950000000003	3.38668	0.0985287	0.0113463	0.193064	0.0719708
chr13	98259701	98259801	5634828	0	+	0.46	(0.45,0.485]	chr13	553480	145	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	8	262	2	2.80441	2.95987	3.11533	0.0127356	0.00720103	0.0768431	0.0543254
chr7	112205201	112205301	3692560	0	-	0.5	(0.485,0.523]	chr7	354969	2007	INTRON	INTRON	DOCK4	ENSG00000128512.24	ENST00000437633.6:ENST00000428084.6:ENST00000476846.5:ENST00000661654.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	90	2	2.81013	2.959755	3.10938	0.0416572	0.0154038	0.136301	0.0869771
chr3	188266351	188266451	1652922	0	+	0.51	(0.485,0.523]	chr3	173754	258	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	3	91	2	2.77877	2.959695	3.14062	0.0682166	0.00698603	0.164526	0.0534814
chr1	17589775	17589875	54077	0	+	0.61	(0.58,1]	chr1	5465	9	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5	protein_coding	protein_coding	protein_coding	protein_coding	6	127	2	1.76652	2.959445	4.15237	0.0541697	0.00456039	0.167824	0.0438198
chr6	31734363	31734463	3119429	0	-	0.51	(0.485,0.523]	chr6	303331	1	SS3_PROX	SS3_PROX:INTRON	CLIC1	ENSG00000213719.8	ENST00000395892.5:ENST00000375780.6:ENST00000375779.6:ENST00000616760.1:ENST00000375784.8	protein_coding	protein_coding	protein_coding	protein_coding	5	127	2	2.11794	2.959155	3.80037	0.0344121	0.0131927	0.134884	0.0785449
chr11	2685999	2686099	4972171	0	-	0.64	(0.58,1]	chr11	481197	778	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	3	78	2	2.7859	2.95912	3.13234	0.0322188	0.0136245	0.121593	0.0811816
chr15	24984220	24984320	6063687	0	+	0.33	(0.29,0.33]	chr15	595387	19	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	9	173	2	1.77052	2.9588300000000003	4.14714	0.0455832	0.0065704	0.154743	0.0537374
chr17	82008736	82008836	6815384	0	+	0.68	(0.58,1]	chr17	688641	45	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5:ENST00000578236.5:ENST00000581608.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	163	2	2.93456	2.95842	2.98228	0.0198344	0.00272913	0.096302	0.028553
chr12	26528751	26528851	5398511	0	-	0.49	(0.485,0.523]	chr12	528527	331	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	3	94	2	2.48786	2.95838	3.4289	0.0579645	0.00977282	0.154685	0.0664239
chr22	32804219	32804319	7717651	0	+	0.58	(0.523,0.58]	chr22	807776	17	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	2	79	2	2.46839	2.9580450000000003	3.4477	0.0683019	0.0242383	0.193274	0.106588
chr6	158243693	158243793	3060952	0	+	0.33	(0.29,0.33]	chr6	297572	110	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	9	220	2	2.59839	2.95765	3.31691	0.0137682	0.00692232	0.0801965	0.0530155
chr20	44412403	44412501	7483045	0	+	0.642857	(0.58,1]	chr20	779658	38	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000619550.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	2.61009	2.95641	3.30273	0.0747426	0.0107069	0.172361	0.0700635
chr10	48041133	48041232	4680777	0	-	0.494949	(0.485,0.523]	chr10	446508	17	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	2	67	2	2.74113	2.9563550000000003	3.17158	0.0719691	0.017456	0.168159	0.0928044
chr9	124258250	124258305	4235496	0	+	0.836364	(0.58,1]	chr9	402073	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	NEK6	ENSG00000119408.17	ENST00000373603.5:ENST00000540326.5:ENST00000320246.10:ENST00000373600.7:ENST00000545174.5:ENST00000444973.5:ENST00000454453.5	protein_coding	protein_coding	protein_coding	protein_coding	3	86	2	2.76261	2.9558549999999997	3.1491	0.0297581	0.0154006	0.116461	0.0869771
chr11	70816964	70817064	5062453	0	-	0.54	(0.523,0.58]	chr11	492713	94	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	67	2	2.77655	2.955805	3.13506	0.0685533	0.0186841	0.165066	0.0976296
chr7	66702475	66702575	3382440	0	+	0.46	(0.45,0.485]	chr7	326362	169	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	7	199	2	2.41058	2.95572	3.50086	0.0152276	0.0113234	0.0862856	0.0723264
chrX	133844268	133844368	8114610	0	-	0.38	(0.36,0.39]	chrX	845529	93	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	162	2	2.31301	2.95526	3.59751	0.0630652	0.0026822	0.161125	0.0282423
chr17	72558422	72558522	6963895	0	-	0.51	(0.485,0.523]	chr17	710389	240	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	4	129	2	2.09576	2.955235	3.81471	0.102359	0.00116303	0.197541	0.0157899
chr2	235529437	235529537	1062892	0	+	0.58	(0.523,0.58]	chr2	115656	45	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	69	2	2.92656	2.955205	2.98385	0.0505794	0.0289226	0.148456	0.124
chr21	42845562	42845661	7675427	0	-	0.555556	(0.523,0.58]	chr21	802287	19	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	6	145	2	2.80204	2.954595	3.10715	0.0418959	0.00526246	0.136901	0.0444841
chr10	112194847	112194947	4760735	0	-	0.37	(0.36,0.39]	chr10	455255	112	INTRON	INTRON	GPAM	ENSG00000119927.14	ENST00000480130.5:ENST00000498541.1	protein_coding	processed_transcript	protein_coding	processed_transcript	4	133	2	2.55061	2.954205	3.3578	0.10062	0.00281583	0.196131	0.0291091
chr10	79224272	79224372	4533604	0	+	0.46	(0.45,0.485]	chr10	432457	76	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	3	100	2	2.64423	2.9539999999999997	3.26377	0.0475981	0.0149252	0.144437	0.0848525
chr3	9414004	9414104	1402244	0	+	0.51	(0.485,0.523]	chr3	150072	157	INTRON	INTRON	SETD5	ENSG00000168137.20	ENST00000402198.7:ENST00000431285.5:ENST00000683012.1:ENST00000463180.5:ENST00000478475.5:ENST00000415650.5:ENST00000682536.1:ENST00000663774.1:ENST00000665872.1:ENST00000666307.1:ENST00000693430.1:ENST00000691925.1:ENST00000684606.1:ENST00000691175.1:ENST00000688835.1:ENST00000683262.1:ENST00000443339.5:ENST00000406341.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	71	2	2.79862	2.9539999999999997	3.10938	0.0416572	0.0375966	0.139924	0.136301
chr16	85385537	85385637	6516926	0	+	0.68	(0.58,1]	chr16	646391	262	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	2.55596	2.95341	3.35086	0.0534085	0.0218816	0.167062	0.101015
chr21	37367823	37367919	7618977	0	+	0.770833	(0.58,1]	chr21	796007	2	SS5_PROX	SS5_PROX:INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1:ENST00000338785.8:ENST00000643624.1	protein_coding	protein_coding	protein_coding	protein_coding	5	110	2	2.06805	2.952985	3.83792	0.0335725	0.00865536	0.133139	0.0623824
chr1	43595766	43595865	107408	0	+	0.59596	(0.58,1]	chr1	13240	28	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	4	117	2	2.66286	2.952725	3.24259	0.0183006	0.0119819	0.0958973	0.0743424
chr22	20937437	20937537	7688965	0	+	0.48	(0.45,0.485]	chr22	804526	28	INTRON	INTRON	CRKL	ENSG00000099942.13	ENST00000354336.8:ENST00000411769.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	94	2	2.62266	2.952425	3.28219	0.0334207	0.0243222	0.12421	0.113231
chr10	100548635	100548735	4569152	0	+	0.52	(0.485,0.523]	chr10	436105	6	UTR3	UTR3:EXON_MRNA	HIF1AN	ENSG00000166135.14	ENST00000299163.7	protein_coding	protein_coding	protein_coding	protein_coding	6	178	2	2.59945	2.9523	3.30515	0.0357928	0.00256238	0.127853	0.0273911
chr14	54776740	54776840	5821561	0	+	0.44	(0.419,0.45]	chr14	569151	2	SS5_PROX	SS5_PROX:INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555192.1:ENST00000556069.5:ENST00000553988.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	79	2	2.81936	2.952175	3.08499	0.0509743	0.0405181	0.148503	0.145945
chr19	35001544	35001644	7244873	0	+	0.41	(0.39,0.419]	chr19	742062	3	SS5_PROX	SS5_PROX:INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	132	2	2.48455	2.95216	3.41977	0.0491123	0.0116434	0.146142	0.0736274
chr16	46906241	46906341	6442646	0	+	0.5	(0.485,0.523]	chr16	639007	51	INTRON	INTRON	GPT2	ENSG00000166123.14	ENST00000340124.9:ENST00000562132.5:ENST00000440783.2	protein_coding	protein_coding	protein_coding	protein_coding	5	132	2	1.89906	2.95193	4.0048	0.0542037	0.00914366	0.167824	0.0642449
chr7	47367764	47367864	3587469	0	-	0.53	(0.523,0.58]	chr7	346030	211	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	2.68276	2.95175	3.22074	0.0464998	0.0350559	0.156036	0.12704
chr16	81681318	81681417	6510124	0	+	0.545455	(0.523,0.58]	chr16	645979	23	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000398040.8	protein_coding	protein_coding	protein_coding	protein_coding	3	90	2	2.68048	2.95061	3.22074	0.0350559	0.020416	0.12704	0.102668
chr15	98721459	98721559	6194059	0	+	0.58	(0.523,0.58]	chr15	609659	130	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	92	2	2.3839	2.950265	3.51663	0.0679164	0.00782908	0.164413	0.0574276
chr7	73595236	73595336	3602801	0	-	0.56	(0.523,0.58]	chr7	347606	2	SS5_PROX	SS5_PROX:INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	107	2	2.59975	2.95009	3.30043	0.0308549	0.0152448	0.119556	0.0863685
chr2	63025942	63026042	817186	0	+	0.4	(0.39,0.419]	chr2	92205	288	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000496857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	134	2	2.6683	2.949925	3.23155	0.0494332	0.00668305	0.146515	0.0517876
chr17	46945389	46945488	6746937	0	+	0.484848	(0.45,0.485]	chr17	679541	35	INTRON	INTRON	GOSR2	ENSG00000108433.17	ENST00000640792.1:ENST00000640358.1:ENST00000573224.2:ENST00000639985.1:ENST00000639199.1:ENST00000639365.1:ENST00000638579.1:ENST00000638189.1:ENST00000639066.1:ENST00000638219.1:ENST00000639388.1:ENST00000572403.5:ENST00000640723.1:ENST00000638468.1:ENST00000639713.1:ENST00000640866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	111	2	2.56727	2.94968	3.33209	0.0308842	0.0174159	0.119556	0.0928044
chr10	63263750	63263850	4698054	0	-	0.5	(0.485,0.523]	chr10	447720	434	INTRON	INTRON	JMJD1C	ENSG00000171988.20	ENST00000399262.7:ENST00000402544.5:ENST00000542921.5:ENST00000469152.5:ENST00000489372.4:ENST00000633035.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	152	2	2.6302	2.9496000000000002	3.269	0.0340036	0.0050534	0.124932	0.0432502
chr4	67804318	67804418	2050566	0	+	0.38	(0.36,0.39]	chr4	209734	15	INTRON	INTRON	UBA6-DT	ENSG00000248049.8	ENST00000500538.7:ENST00000667140.1:ENST00000663060.1	lncRNA	lncRNA	lncRNA	lncRNA	2	72	2	2.59031	2.9494	3.30849	0.0956255	0.0148029	0.189038	0.0847481
chr7	36260724	36260824	3346063	0	+	0.36	(0.33,0.36]	chr7	323698	213	INTRON	INTRON	EEPD1	ENSG00000122547.11	ENST00000242108.9:ENST00000534978.1	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	2.93873	2.949345	2.95996	0.0551496	0.0305837	0.153649	0.126768
chr16	67966974	67967070	6610221	0	-	0.59375	(0.58,1]	chr16	661575	2	INTRON	INTRON	SLC12A4	ENSG00000124067.17	ENST00000422611.6:ENST00000316341.8:ENST00000572037.5:ENST00000570802.5:ENST00000576616.5:ENST00000573023.6:ENST00000576377.1:ENST00000571299.5:ENST00000572010.5:ENST00000576462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	2.74846	2.94878	3.1491	0.0605281	0.0154006	0.158506	0.0869771
chr5	1102808	1102908	2608879	0	-	0.66	(0.58,1]	chr5	259667	82	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.74846	2.94878	3.1491	0.0605281	0.0154006	0.158506	0.0869771
chr6	158611585	158611685	3064420	0	+	0.59	(0.58,1]	chr6	297742	14	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.74846	2.94878	3.1491	0.0605281	0.0154006	0.158506	0.0869771
chr7	221449	221548	3305869	0	+	0.666667	(0.58,1]	chr7	320161	121	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.74846	2.94878	3.1491	0.0605281	0.0154006	0.158506	0.0869771
chr16	89292896	89292995	6659734	0	-	0.626263	(0.58,1]	chr16	666648	7	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	201	2	2.40736	2.94848	3.4896	0.0320117	6.74425e-4	0.121593	0.0108081
chr3	48087872	48087972	1765944	0	-	0.46	(0.45,0.485]	chr3	182011	716	INTRON	INTRON	MAP4	ENSG00000047849.22	ENST00000395734.7:ENST00000426837.6:ENST00000360240.10:ENST00000423088.5:ENST00000439356.2:ENST00000468075.2	protein_coding	protein_coding	protein_coding	protein_coding	3	92	2	2.94003	2.947005	2.95398	0.0561701	0.0115759	0.154188	0.0732749
chr20	36861163	36861263	7557113	0	-	0.61	(0.58,1]	chr20	789159	14	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9	protein_coding	protein_coding	protein_coding	protein_coding	3	78	2	2.66286	2.946465	3.23007	0.0271644	0.0183006	0.112113	0.0958973
chr19	945710	945810	7185303	0	+	0.71	(0.58,1]	chr19	730741	126	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	83	2	2.32693	2.94635	3.56577	0.038688	0.0146864	0.142489	0.0826843
chr8	17890983	17891081	3946708	0	-	0.295918	(0.29,0.33]	chr8	377042	51	INTRON	INTRON	FGL1	ENSG00000104760.17	ENST00000398056.6:ENST00000427924.5:ENST00000381841.4:ENST00000381840.5:ENST00000398054.5:ENST00000518650.5:ENST00000518769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	90	2	2.13318	2.94623	3.75928	0.0950353	0.0045073	0.189021	0.0400499
chr6	3146945	3147044	2828608	0	+	0.353535	(0.33,0.36]	chr6	277604	61	INTRON	INTRON	BPHL	ENSG00000137274.13	ENST00000434640.5:ENST00000430655.6:ENST00000424847.6:ENST00000433912.5:ENST00000380379.10:ENST00000490918.5:ENST00000380375.4:ENST00000488487.2:ENST00000423798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	70	2	2.75754	2.9453	3.13306	0.0735337	0.0206439	0.17026	0.102713
chr11	2973367	2973465	4972621	0	-	0.479592	(0.45,0.485]	chr11	481274	7	INTRON	INTRON	NAP1L4	ENSG00000205531.13	ENST00000620138.4:ENST00000380542.9:ENST00000526115.5:ENST00000532325.6:ENST00000448187.5:ENST00000399614.6:ENST00000430811.5:ENST00000529361.5:ENST00000528968.5:ENST00000530064.5:ENST00000526842.5:ENST00000531291.5:ENST00000455338.6:ENST00000534372.1	protein_coding	protein_coding	protein_coding	protein_coding	3	92	2	2.79781	2.94519	3.09257	0.0447818	0.0165615	0.140478	0.0917029
chr17	46151313	46151412	6917410	0	-	0.424242	(0.419,0.45]	chr17	704555	27	INTRON	INTRON	KANSL1	ENSG00000120071.15	ENST00000574590.6:ENST00000572904.6:ENST00000432791.7:ENST00000575318.6:ENST00000638275.1:ENST00000262419.10:ENST00000648792.1:ENST00000639531.1:ENST00000639150.1:ENST00000639853.1:ENST00000571698.2:ENST00000639375.1:ENST00000638269.1:ENST00000576248.2:ENST00000639356.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	168	2	2.05041	2.94502	3.83963	0.0954954	0.00152782	0.189038	0.0191213
chr17	38729495	38729595	6729378	0	+	0.6	(0.58,1]	chr17	676371	40	UTR3	UTR3:EXON_MRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5	protein_coding	protein_coding	protein_coding	protein_coding	5	109	2	1.70496	2.94441	4.18386	0.104919	9.90719e-4	0.198927	0.0141138
chr1	204081479	204081578	322134	0	+	0.676768	(0.58,1]	chr1	36272	29	INTRON	INTRON	SOX13	ENSG00000143842.15	ENST00000367204.6:ENST00000367203.8:ENST00000534185.1:ENST00000530882.1:ENST00000525442.1:ENST00000528591.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	89	2	2.09276	2.94437	3.79598	0.0619333	0.00940557	0.180615	0.0653252
chr17	82000045	82000145	6815297	0	+	0.68	(0.58,1]	chr17	688640	28	INTRON	INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	146	2	2.76261	2.94334	3.12407	0.0297581	0.00207036	0.116461	0.0236119
chr20	49694883	49694983	7575985	0	-	0.46	(0.45,0.485]	chr20	791530	378	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	3	92	2	2.87419	2.9431000000000003	3.01201	0.061784	0.0100974	0.158872	0.0674202
chr22	15821033	15821131	7682935	0	+	0.653061	(0.58,1]	chr22	803568	20	INTRON	INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000447898.5	lncRNA	lncRNA	lncRNA	lncRNA	2	58	2	2.79178	2.9429	3.09402	0.0565563	0.0174733	0.154343	0.0928044
chr5	1054381	1054481	2608364	0	-	0.63	(0.58,1]	chr5	259538	5	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10:ENST00000634447.1	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.79178	2.9429	3.09402	0.0565563	0.0174733	0.154343	0.0928044
chr21	46144817	46144916	7679755	0	-	0.616162	(0.58,1]	chr21	802962	22	INTRON	INTRON	FTCD	ENSG00000160282.15	ENST00000291670.9:ENST00000397748.5:ENST00000498355.6:ENST00000397746.8:ENST00000397743.1:ENST00000488577.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	121	2	2.52834	2.942675	3.35701	0.0249502	0.00953031	0.114418	0.0658012
chr3	28277740	28277840	1432609	0	+	0.49	(0.485,0.523]	chr3	152954	140	INTRON	INTRON	CMC1	ENSG00000187118.14	ENST00000477739.1:ENST00000423894.5:ENST00000466830.6:ENST00000334841.10:ENST00000418849.2:ENST00000396610.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	89	2	2.77597	2.942675	3.10938	0.0416572	0.0166536	0.136301	0.0917029
chr8	22369635	22369735	3770044	0	+	0.46	(0.45,0.485]	chr8	362721	15	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	5	131	2	2.82175	2.9425350000000003	3.06332	0.0467992	0.00689224	0.143232	0.0527957
chr21	44868316	44868414	7678525	0	-	0.489796	(0.485,0.523]	chr21	802773	23	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	227	2	2.28384	2.94231	3.60078	0.031367	0.00588153	0.127822	0.0506158
chr3	172135245	172135344	1628425	0	+	0.363636	(0.36,0.39]	chr3	170555	13	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	294	2	2.77872	2.941875	3.10503	0.0145965	0.0069429	0.0826064	0.0531609
chrX	133906557	133906657	8115233	0	-	0.36	(0.33,0.36]	chrX	845529	716	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	256	2	2.12469	2.94158	3.75847	0.0676722	5.94188e-4	0.164065	0.00989013
chr10	38055060	38055160	4478507	0	+	0.4	(0.39,0.419]	chr10	428212	6	CDS	CDS:EXON_MRNA:INTRON	ZNF33A	ENSG00000189180.16	ENST00000307441.13:ENST00000374618.7:ENST00000628825.2:ENST00000458705.6:ENST00000432900.7:ENST00000469037.2	protein_coding	protein_coding	protein_coding	protein_coding	3	97	2	2.92909	2.9412849999999997	2.95348	0.0609293	0.0127764	0.158506	0.0773423
chr16	89294090	89294189	6659746	0	-	0.626263	(0.58,1]	chr16	666648	19	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	290	2	2.65833	2.9410999999999996	3.22387	0.0169773	7.61382e-4	0.0889149	0.0117507
chr3	172091381	172091481	1627981	0	+	0.28	[0,0.29]	chr3	170535	441	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	98	2	2.68217	2.940995	3.19982	0.029619	0.0118285	0.116079	0.0746945
chr11	65430062	65430162	4871642	0	+	0.45	(0.419,0.45]	chr11	468177	74	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	57	1932	2	2.88281	2.94077	2.99873	0.0119597	0.00158358	0.0743245	0.0196418
chr8	22006086	22006185	3768701	0	+	0.383838	(0.36,0.39]	chr8	362335	11	UTR3	UTR3:EXON_MRNA	XPO7	ENSG00000130227.17	ENST00000252512.14:ENST00000433566.8	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	2.73901	2.94062	3.14223	0.0786198	0.0209989	0.175203	0.103249
chr8	141000579	141000679	4093137	0	-	0.77	(0.58,1]	chr8	388935	3	SS5_PROX	SS5_PROX:INTRON	PTK2	ENSG00000169398.20	ENST00000696786.1:ENST00000522684.5:ENST00000395218.3:ENST00000521059.5:ENST00000519993.5:ENST00000340930.7:ENST00000524357.5:ENST00000521791.5:ENST00000523067.5:ENST00000520828.5:ENST00000519881.5:ENST00000520892.5:ENST00000517453.5:ENST00000520045.5:ENST00000521332.5:ENST00000524040.5:ENST00000523679.1:ENST00000524257.5:ENST00000523797.1:ENST00000519635.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	78	2	2.6194	2.940315	3.26123	0.0257049	0.0202577	0.109543	0.102015
chr7	47477005	47477105	3588578	0	-	0.51	(0.485,0.523]	chr7	346123	239	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	2.66276	2.94027	3.21778	0.0803133	0.0157761	0.177452	0.0884237
chr11	64148447	64148546	5049062	0	-	0.535354	(0.523,0.58]	chr11	490257	217	INTRON	INTRON	MACROD1	ENSG00000133315.12	ENST00000255681.7:ENST00000675777.1:ENST00000545464.5:ENST00000542359.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	107	2	2.45602	2.9400950000000003	3.42417	0.0252027	0.021252	0.108002	0.104314
chr1	1027439	1027538	989	0	+	0.646465	(0.58,1]	chr1	166	46	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.78186	2.9400500000000003	3.09824	0.0342923	0.0341637	0.13449	0.125129
chr13	98246603	98246703	5634697	0	+	0.4	(0.39,0.419]	chr13	553480	14	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	5	167	2	2.67173	2.9400500000000003	3.20837	0.0367164	0.00706441	0.129029	0.0540197
chr7	47456727	47456827	3588375	0	-	0.6	(0.58,1]	chr7	346123	36	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.78186	2.9400500000000003	3.09824	0.0342923	0.0341637	0.13449	0.125129
chr21	43728235	43728334	7623876	0	+	0.606061	(0.58,1]	chr21	796696	45	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000438837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	79	2	2.52834	2.9396	3.35086	0.0249502	0.0218816	0.114418	0.101015
chr12	26460919	26461019	5397819	0	-	0.46	(0.45,0.485]	chr12	528476	169	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000451599.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	68	2	2.65647	2.938415	3.22036	0.0837071	0.016408	0.181508	0.0911382
chr3	58103104	58103193	1483998	0	+	0.516854	(0.485,0.523]	chr3	159632	4	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1:ENST00000493452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	69	2	2.85817	2.938035	3.0179	0.0479403	0.0334631	0.144601	0.133139
chr20	35343709	35343809	7552871	0	-	0.5	(0.485,0.523]	chr20	788509	284	INTRON	INTRON	UQCC1	ENSG00000101019.22	ENST00000374380.6:ENST00000374394.7:ENST00000374384.6:ENST00000359226.6:ENST00000349714.9:ENST00000457259.5:ENST00000374385.10:ENST00000453855.5:ENST00000397556.7:ENST00000424405.5:ENST00000497717.5:ENST00000443429.5:ENST00000438533.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	66	2	2.70247	2.937025	3.17158	0.0759932	0.017456	0.174411	0.0928044
chr2	134451435	134451534	898762	0	+	0.606061	(0.58,1]	chr2	101298	27	UTR3	UTR3:EXON_MRNA	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	4	96	2	2.83384	2.936	3.03816	0.0529065	0.00396764	0.14912	0.0368027
chr3	49967821	49967921	1467365	0	+	0.47	(0.45,0.485]	chr3	157140	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	RBM6	ENSG00000004534.15	ENST00000442092.5:ENST00000443081.5:ENST00000419610.5:ENST00000441115.5:ENST00000422955.5:ENST00000454079.5:ENST00000266022.9:ENST00000425608.5:ENST00000434592.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	153	2	2.79067	2.9359599999999997	3.08125	0.0234805	0.0103016	0.104385	0.0678983
chr17	55274983	55275083	6757208	0	+	0.38	(0.36,0.39]	chr17	681704	65	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	160	2	2.20454	2.9359	3.66726	0.0738784	0.00224025	0.170904	0.024843
chrX	1397124	1397224	7830132	0	+	0.61	(0.58,1]	chrX	822052	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	LINC00106	ENSG00000236871.7	ENST00000434938.7:ENST00000430235.7	lncRNA	lncRNA	lncRNA	lncRNA	2	58	2	2.83384	2.9353	3.03676	0.0529065	0.0198789	0.14912	0.100864
chr19	943516	943616	7185281	0	+	0.45	(0.419,0.45]	chr19	730741	104	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	80	2	2.7072600000000002	2.935235	3.16321	0.0496323	0.0455634	0.160725	0.142336
chr6	31652399	31652475	3119048	0	-	0.592105	(0.58,1]	chr6	303158	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BAG6	ENSG00000204463.14	ENST00000211379.9:ENST00000679119.1:ENST00000375964.11:ENST00000676571.1:ENST00000676615.2:ENST00000362049.10:ENST00000439687.6:ENST00000437771.5:ENST00000451898.5:ENST00000424480.5:ENST00000441054.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	145	2	2.22106	2.93445	3.64784	0.0448257	0.00130204	0.14054	0.0171306
chr11	70778157	70778257	5062063	0	-	0.47	(0.45,0.485]	chr11	492701	603	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	70	2	2.92826	2.934145	2.94003	0.0561701	0.0301249	0.154188	0.126768
chr10	75493496	75493596	4521093	0	+	0.52	(0.485,0.523]	chr10	432249	419	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	5	153	2	2.33266	2.93398	3.5353	0.0731249	0.00135138	0.170083	0.0175312
chr19	38648959	38649059	7257853	0	+	0.58	(0.523,0.58]	chr19	743980	3	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	108	2	2.32973	2.933935	3.53814	0.0281429	0.020829	0.121961	0.0990379
chr18	74276434	74276534	7178297	0	-	0.4	(0.39,0.419]	chr18	730013	126	INTRON	INTRON	CYB5A	ENSG00000166347.19	ENST00000340533.9:ENST00000299438.13:ENST00000583418.1:ENST00000494131.6:ENST00000397914.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	73	2	2.86613	2.933905	3.00168	0.0665161	0.0279244	0.162469	0.121102
chr16	89302728	89302827	6659836	0	-	0.393939	(0.39,0.419]	chr16	666658	7	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	237	2	2.32074	2.93343	3.54612	0.0241367	0.0122261	0.106588	0.0757339
chr1	48225590	48225689	120955	0	+	0.515152	(0.485,0.523]	chr1	15165	4	INTRON	INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	90	2	2.21906	2.9331300000000002	3.6472	0.0861655	0.00579534	0.181978	0.0472203
chr20	33010523	33010623	7457394	0	+	0.61	(0.58,1]	chr20	776366	1	SS3_PROX	SS3_PROX:INTRON	BPIFB2	ENSG00000078898.7	ENST00000170150.4	protein_coding	protein_coding	protein_coding	protein_coding	4	109	2	2.86246	2.93249	3.00252	0.0190891	0.0112778	0.0952138	0.0717097
chr9	14843160	14843259	4280149	0	-	0.494949	(0.485,0.523]	chr9	408985	1	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	150	2	2.0556	2.931225	3.80685	0.0639314	0.00388927	0.161669	0.0363508
chr8	127812636	127812736	3917965	0	+	0.51	(0.485,0.523]	chr8	374160	87	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000656168.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2	lncRNA	lncRNA	lncRNA	lncRNA	4	106	2	2.55961	2.93113	3.30265	0.0306642	0.0169478	0.119264	0.0923809
chr1	78133107	78133206	165139	0	+	0.393939	(0.39,0.419]	chr1	18816	68	INTRON	INTRON	GIPC2	ENSG00000137960.6	ENST00000370759.4	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	2.76623	2.9308899999999998	3.09555	0.0762396	0.0231436	0.174496	0.109883
chr3	105847835	105847934	1862764	0	-	0.333333	(0.33,0.36]	chr3	189853	80	INTRON	INTRON	CBLB	ENSG00000114423.23	ENST00000645759.1:ENST00000394030.8:ENST00000646499.1:ENST00000645425.1:ENST00000646825.1:ENST00000643322.1:ENST00000403724.5:ENST00000405772.5:ENST00000447441.6:ENST00000643403.1:ENST00000438603.6:ENST00000443752.2:ENST00000643192.1:ENST00000642907.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	69	2	2.68323	2.9305149999999998	3.1778	0.0814187	0.0187975	0.178482	0.0980631
chr10	79174817	79174917	4533105	0	+	0.6	(0.58,1]	chr10	432438	123	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.50987	2.9301899999999996	3.35051	0.0865901	0.00953058	0.182221	0.0650078
chr2	200332568	200332668	986216	0	+	0.29	[0,0.29]	chr2	108291	27	INTRON	INTRON	SPATS2L	ENSG00000196141.14	ENST00000439084.5:ENST00000409718.5:ENST00000358677.9:ENST00000409988.7:ENST00000409385.5:ENST00000439395.5:ENST00000444012.5:ENST00000451764.6:ENST00000360760.9:ENST00000423749.5:ENST00000457757.5:ENST00000471601.5:ENST00000428692.5:ENST00000453663.5:ENST00000409140.8:ENST00000459656.5:ENST00000471533.5:ENST00000409397.6:ENST00000619961.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	132	2	2.82215	2.9298	3.03745	0.0276585	0.00475602	0.112851	0.0414441
chr2	152378802	152378902	925899	0	+	0.39	(0.36,0.39]	chr2	103058	427	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	4	121	2	2.80799	2.9287400000000003	3.04949	0.0716011	0.00613954	0.168159	0.0490399
chr10	75682273	75682373	4522986	0	+	0.33	(0.29,0.33]	chr10	432271	343	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	138	2	2.69789	2.928605	3.15932	0.0745282	0.00271278	0.172224	0.0285411
chr20	36860270	36860369	7557104	0	-	0.535354	(0.523,0.58]	chr20	789159	5	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9	protein_coding	protein_coding	protein_coding	protein_coding	3	90	2	2.30272	2.928065	3.55341	0.076523	0.00716661	0.174882	0.0541871
chr2	91644550	91644650	1217534	0	-	0.46	(0.45,0.485]	chr2	131111	8	INTRON	INTRON	LSP1P4	ENSG00000143429.11	ENST00000692025.1:ENST00000423774.3:ENST00000609777.6:ENST00000692653.1:ENST00000608501.5:ENST00000544283.5:ENST00000689711.1:ENST00000687292.1:ENST00000608018.5:ENST00000608531.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	69	2	2.87419	2.9277100000000003	2.98123	0.061784	0.0270875	0.158872	0.119337
chr14	39181569	39181666	5791768	0	+	0.494845	(0.485,0.523]	chr14	567432	12	CDS	CDS:EXON_MRNA:INTRON	PNN	ENSG00000100941.9	ENST00000216832.9:ENST00000557680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	631	2	2.36874	2.92715	3.48556	0.0309581	3.09063e-4	0.119758	0.00621702
chr13	98261501	98261601	5634846	0	+	0.35	(0.33,0.36]	chr13	553480	163	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	2	72	2	2.83079	2.92618	3.02157	0.0503796	0.0376711	0.148216	0.140049
chr17	6691240	6691340	6845981	0	-	0.6	(0.58,1]	chr17	693295	3	SS3_PROX	SS3_PROX:INTRON	SLC13A5	ENSG00000141485.17	ENST00000433363.7:ENST00000293800.10:ENST00000381074.8:ENST00000573648.5:ENST00000572727.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	110	2	2.70139	2.925245	3.1491	0.0230555	0.0154006	0.102982	0.0869771
chr9	77401242	77401342	4172261	0	+	0.39	(0.36,0.39]	chr9	396641	50	INTRON	INTRON	VPS13A	ENSG00000197969.14	ENST00000376636.7:ENST00000360280.8:ENST00000484581.6:ENST00000376646.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	75	2	2.79528	2.925135	3.05499	0.0505441	0.0413701	0.148456	0.148333
chr8	120693491	120693591	4058837	0	-	0.45	(0.419,0.45]	chr8	386602	4	SS5_PROX	SS5_PROX:INTRON	SNTB1	ENSG00000172164.15	ENST00000395601.7:ENST00000517992.2:ENST00000648490.1:ENST00000519177.5:ENST00000519298.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	307	2	2.29035	2.92489	3.55943	0.0683941	7.9252e-4	0.164885	0.0120621
chr6	166333790	166333889	3301411	0	-	0.494949	(0.485,0.523]	chr6	319660	20	INTRON	INTRON	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000478705.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	147	2	2.76707	2.924715	3.08236	0.0220012	0.0103354	0.101502	0.0681131
chr7	47354422	47354522	3587335	0	-	0.65	(0.58,1]	chr7	346030	77	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	3	78	2	2.32207	2.924645	3.52722	0.0631758	0.00611467	0.161352	0.0489549
chr3	125357280	125357368	1902598	0	-	0.613636	(0.58,1]	chr3	193000	1	SS5_PROX	SS5_PROX:INTRON	ZNF148	ENSG00000163848.20	ENST00000360647.9:ENST00000468369.5:ENST00000484491.5:ENST00000492394.5:ENST00000485866.5:ENST00000465763.5:ENST00000471196.1	protein_coding	protein_coding	protein_coding	protein_coding	3	76	2	2.7859	2.9246049999999997	3.06331	0.036259	0.0136245	0.127941	0.0811816
chr4	183113418	183113518	2167535	0	+	0.47	(0.45,0.485]	chr4	219488	134	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000508614.5:ENST00000448232.6:ENST00000513834.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	121	2	1.9378	2.92401	3.91022	0.0646604	0.0117376	0.185606	0.0737098
chr17	82003944	82004044	6815336	0	+	0.68	(0.58,1]	chr17	688640	67	INTRON	INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	182	2	2.22141	2.92326	3.62511	0.0545512	4.3776e-4	0.152588	0.00796534
chr21	46150625	46150725	7679820	0	-	0.66	(0.58,1]	chr21	802987	1	SS3_PROX	SS3_PROX:INTRON	FTCD	ENSG00000160282.15	ENST00000291670.9:ENST00000397748.5:ENST00000498355.6:ENST00000397746.8:ENST00000397743.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	2.78186	2.9225849999999998	3.06331	0.036259	0.0342923	0.13449	0.127941
chr16	85428719	85428819	6517358	0	+	0.6	(0.58,1]	chr16	646391	694	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.71042	2.92138	3.13234	0.0396128	0.0322188	0.143388	0.121593
chr5	172276303	172276403	2812472	0	-	0.44	(0.419,0.45]	chr5	275346	416	INTRON	INTRON	UBTD2	ENSG00000168246.6	ENST00000393792.3	protein_coding	protein_coding	protein_coding	protein_coding	3	100	2	2.15749	2.9213250000000004	3.68516	0.104805	0.00665473	0.198753	0.0515847
chr14	103103495	103103551	5921847	0	+	0.785714	(0.58,1]	chr14	579207	2	SS3_PROX	SS3_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000559116.1:ENST00000560925.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	57	2	2.74846	2.92124	3.09402	0.0605281	0.0174733	0.158506	0.0928044
chr9	133737753	133737853	4427961	0	-	0.61	(0.58,1]	chr9	423137	1	SS5_PROX	SS5_PROX:INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000427237.6:ENST00000298628.6	protein_coding	protein_coding	protein_coding	protein_coding	3	80	2	2.37998	2.92115	3.46232	0.0345705	0.0178328	0.135397	0.0915706
chr19	18839980	18840080	7224774	0	+	0.68	(0.58,1]	chr19	739340	63	INTRON	INTRON	UPF1	ENSG00000005007.13	ENST00000262803.10:ENST00000599848.5:ENST00000601981.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	2.84993	2.9203650000000003	2.9908	0.0409591	0.0297842	0.136191	0.126591
chr12	120984260	120984360	5340973	0	+	0.42	(0.419,0.45]	chr12	521546	48	INTRON	INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000400024.6:ENST00000560968.5:ENST00000402929.5:ENST00000535955.5:ENST00000538626.2:ENST00000538646.5:ENST00000541924.5:ENST00000544574.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	136	2	2.55354	2.9191849999999997	3.28483	0.038131	0.0152812	0.131324	0.0865627
chr7	73601892	73601992	3602876	0	-	0.61	(0.58,1]	chr7	347634	18	INTRON	INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1:ENST00000488212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	103	2	2.58616	2.9191450000000003	3.25213	0.0406424	0.00405239	0.135868	0.0371518
chr17	58090471	58090571	6764169	0	+	0.58	(0.523,0.58]	chr17	682242	13	UTR3	UTR3:EXON_MRNA	DYNLL2	ENSG00000264364.3	ENST00000579991.3	protein_coding	protein_coding	protein_coding	protein_coding	3	87	2	2.918	2.919095	2.92019	0.0558053	0.0117692	0.154188	0.0743709
chr11	70685207	70685307	5061131	0	-	0.57	(0.523,0.58]	chr11	492688	152	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000659264.1:ENST00000426687.2:ENST00000686462.1:ENST00000470759.5:ENST00000468619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	94	2	2.29891	2.918525	3.53814	0.0454288	0.020829	0.154539	0.0990379
chr7	66662382	66662482	3382028	0	+	0.55	(0.523,0.58]	chr7	326325	74	INTRON	INTRON	ENSG00000226824	ENSG00000226824.8	ENST00000693151.1:ENST00000656515.2:ENST00000448096.1:ENST00000439360.5:ENST00000657342.1:ENST00000428557.1	lncRNA	lncRNA	lncRNA	lncRNA	7	182	2	2.75705	2.918525	3.08	0.0221588	0.00592756	0.101805	0.047914
chr2	3459673	3459762	711030	0	+	0.617977	(0.58,1]	chr2	83176	9	INTRON	INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000479955.5:ENST00000497597.5:ENST00000473348.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	104	2	2.48569	2.918275	3.35086	0.0218816	0.0122197	0.101015	0.0757339
chr1	90027518	90027601	182198	0	+	0.53012	(0.523,0.58]	chr1	19663	3	CDS	CDS:UTR3:EXON_MRNA	ZNF326	ENSG00000162664.17	ENST00000340281.9:ENST00000394583.7:ENST00000370447.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	65	2	2.70025	2.917655	3.13506	0.0763549	0.0186841	0.174544	0.0976296
chr19	36215196	36215296	7248150	0	+	0.65	(0.58,1]	chr19	742977	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZNF146	ENSG00000167635.12	ENST00000456324.5:ENST00000591063.5:ENST00000443387.3:ENST00000586094.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	116	2	2.10429	2.91749	3.73069	0.0252834	0.0106925	0.115084	0.0701355
chrX	20236408	20236507	7995121	0	-	0.444444	(0.419,0.45]	chrX	836359	5	INTRON	INTRON	RPS6KA3	ENSG00000177189.14	ENST00000379565.9:ENST00000643085.1:ENST00000645270.1:ENST00000643402.1:ENST00000644368.1:ENST00000647265.1:ENST00000645268.1:ENST00000646610.1:ENST00000643337.1:ENST00000642835.1:ENST00000644893.1:ENST00000438357.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	206	2	2.72986	2.916935	3.10401	0.0266174	0.00823041	0.111487	0.0593578
chr3	41229847	41229946	1449344	0	+	0.424242	(0.419,0.45]	chr3	154803	21	INTRON	INTRON	CTNNB1	ENSG00000168036.18	ENST00000643541.1:ENST00000645210.1:ENST00000646381.1:ENST00000405570.6:ENST00000642248.1:ENST00000433400.6:ENST00000642992.1:ENST00000431914.6:ENST00000642836.1:ENST00000396185.8:ENST00000642986.1:ENST00000644678.1:ENST00000643031.1:ENST00000396183.7:ENST00000645982.1:ENST00000453024.6:ENST00000645900.1:ENST00000647264.1:ENST00000646174.1:ENST00000643992.1:ENST00000642886.1:ENST00000647390.1:ENST00000643052.1:ENST00000349496.11:ENST00000642426.1:ENST00000646074.1:ENST00000645276.1:ENST00000644138.1:ENST00000646116.1:ENST00000644873.1:ENST00000643865.1:ENST00000644867.1:ENST00000646725.1:ENST00000645493.1:ENST00000646369.1:ENST00000643977.1:ENST00000647413.1:ENST00000644524.1:ENST00000645305.1:ENST00000643297.1:ENST00000450969.6:ENST00000642315.1:ENST00000645320.1:ENST00000441708.2:ENST00000647021.1:ENST00000645927.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	98	2	2.88408	2.916905	2.94973	0.0674152	0.0133526	0.163486	0.0801101
chr21	44872942	44873032	7678572	0	-	0.688889	(0.58,1]	chr21	802776	2	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	330	2	2.63329	2.91685	3.20041	0.00829614	0.00437658	0.0597702	0.0428704
chr1	17668591	17668691	54897	0	+	0.69	(0.58,1]	chr1	5603	36	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	106	2	2.89838	2.916765	2.93515	0.02321	0.00938921	0.10341	0.064735
chr2	101702937	101703037	860685	0	+	0.45	(0.419,0.45]	chr2	97528	40	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	3	98	2	2.77553	2.91674	3.05795	0.0529681	0.0195253	0.149208	0.0999784
chr4	82820936	82821036	2267986	0	-	0.36	(0.33,0.36]	chr4	228372	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000515062.5:ENST00000264405.9:ENST00000505479.1:ENST00000505984.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	96	2	2.45054	2.916685	3.38283	0.0644678	0.0120576	0.162066	0.0754623
chr10	34676041	34676137	4670415	0	-	0.5625	(0.523,0.58]	chr10	445531	1	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	4	105	2	2.45602	2.9159800000000002	3.37594	0.0272868	0.021252	0.112327	0.104314
chr17	55322053	55322151	6757690	0	+	0.357143	(0.33,0.36]	chr17	681735	13	UTR3	UTR3:EXON_MRNA	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000573945.5:ENST00000575345.5	protein_coding	protein_coding	protein_coding	protein_coding	10	242	2	2.28483	2.915295	3.54576	0.015213	0.0106745	0.0862085	0.0700949
chr2	32357686	32357786	747766	0	+	0.67	(0.58,1]	chr2	87152	2	SS5_PROX	SS5_PROX:INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.91446	2.914695	2.91493	0.0464528	0.0259506	0.143232	0.116361
chr19	46868906	46869006	7274260	0	+	0.44	(0.419,0.45]	chr19	747261	73	INTRON	INTRON	ARHGAP35	ENSG00000160007.19	ENST00000672722.1	protein_coding	protein_coding	protein_coding	protein_coding	3	98	2	2.74434	2.914665	3.08499	0.0509743	0.0208637	0.148503	0.102883
chr2	3457794	3457890	711008	0	+	0.552083	(0.523,0.58]	chr2	83170	1	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000441099.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000479955.5:ENST00000497597.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	96	2	2.69087	2.912965	3.13506	0.0422993	0.0186841	0.13762	0.0976296
chr14	103104997	103105072	5921868	0	+	0.653333	(0.58,1]	chr14	579218	1	CDS	CDS:UTR3:EXON_MRNA	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	115	2	2.20984	2.912345	3.61485	0.0195648	0.0133763	0.100156	0.0790342
chr14	89389381	89389481	6028001	0	-	0.46	(0.45,0.485]	chr14	591468	382	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000554005.1:ENST00000555855.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	67	2	2.69512	2.912265	3.12941	0.0794176	0.0199365	0.176565	0.100864
chr2	3423259	3423354	710653	0	+	0.442105	(0.419,0.45]	chr2	83141	9	INTRON	INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000457845.4:ENST00000441983.5:ENST00000417243.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	98	2	2.71246	2.912	3.11154	0.0490796	0.0223142	0.146142	0.108193
chr1	17671288	17671388	54924	0	+	0.59	(0.58,1]	chr1	5603	63	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	125	2	2.46131	2.911495	3.36168	0.0359	0.00298648	0.127853	0.0303704
chr3	5213018	5213118	1399267	0	+	0.51	(0.485,0.523]	chr3	149908	3	SS3_PROX	SS3_PROX:INTRON	EDEM1	ENSG00000134109.11	ENST00000256497.9	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	2.85123	2.910805	2.97038	0.0614408	0.0267011	0.158506	0.118343
chr16	29267914	29268014	6433516	0	+	0.65	(0.58,1]	chr16	636745	158	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	4	129	2	2.27185	2.909965	3.54808	0.0433824	0.00644317	0.152119	0.0530179
chr16	85234965	85235065	6515418	0	+	0.63	(0.58,1]	chr16	646377	72	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	2	67	2	2.38295	2.9091	3.43525	0.0730701	0.0187495	0.199669	0.0936297
chr21	45508955	45509055	7631401	0	+	0.58	(0.523,0.58]	chr21	797836	2	SS3_PROX	SS3_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9:ENST00000423214.1:ENST00000473212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	73	2	2.54344	2.9088950000000002	3.27435	0.0599121	0.0321785	0.177269	0.121593
chr3	48427097	48427195	1766705	0	-	0.387755	(0.36,0.39]	chr3	182283	14	INTRON	INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	407	2	2.43931	2.9076	3.37589	0.00910085	0.00904824	0.0637469	0.0631566
chr2	47331079	47331179	1141913	0	-	0.34	(0.33,0.36]	chr2	124886	72	INTRON	INTRON	EPCAM-DT	ENSG00000234690.7	ENST00000448713.5:ENST00000441997.5:ENST00000419035.1:ENST00000450550.5	lncRNA	lncRNA	lncRNA	lncRNA	3	92	2	2.79331	2.9074999999999998	3.02169	0.0699642	0.0104209	0.167594	0.0684504
chr15	100618594	100618694	6201158	0	+	0.46	(0.45,0.485]	chr15	610127	58	INTRON	INTRON	ASB7	ENSG00000183475.13	ENST00000332783.12:ENST00000558747.5:ENST00000343276.4	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	2.87326	2.906645	2.94003	0.0561701	0.033576	0.154188	0.133139
chr17	7111649	7111747	6847750	0	-	0.326531	(0.29,0.33]	chr17	693423	24	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	86	2	2.79173	2.90648	3.02123	0.0461219	0.0163525	0.143055	0.0909775
chr17	55302852	55302952	6757492	0	+	0.48	(0.45,0.485]	chr17	681718	135	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	123	2	2.66534	2.906475	3.14761	0.046065	0.00728373	0.142918	0.0548996
chr7	130911110	130911210	3711087	0	-	0.5	(0.485,0.523]	chr7	356708	264	INTRON	INTRON	ENSG00000226380	ENSG00000226380.9	ENST00000432045.6:ENST00000447307.5:ENST00000418546.1	lncRNA	lncRNA	lncRNA	lncRNA	7	190	2	2.67181	2.906465	3.14112	0.0435051	0.00212661	0.13918	0.0240298
chr7	66655921	66656020	3381963	0	+	0.59596	(0.58,1]	chr7	326325	9	INTRON	INTRON	ENSG00000226824	ENSG00000226824.8	ENST00000693151.1:ENST00000656515.2:ENST00000448096.1:ENST00000439360.5:ENST00000657342.1:ENST00000428557.1	lncRNA	lncRNA	lncRNA	lncRNA	2	56	2	2.61009	2.90612	3.20215	0.0747426	0.0136092	0.172361	0.0811697
chr10	34683768	34683868	4670494	0	-	0.55	(0.523,0.58]	chr10	445537	42	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	8	229	2	2.23235	2.905805	3.57926	0.0543352	7.73191e-4	0.152012	0.0118556
chr11	65434256	65434356	4871684	0	+	0.51	(0.485,0.523]	chr11	468177	116	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	25	814	2	2.68966	2.90576	3.12186	0.00611594	0.00402608	0.0517362	0.0371291
chr1	65231349	65231448	159290	0	+	0.373737	(0.36,0.39]	chr1	18081	53	UTR3	UTR3:EXON_MRNA	AK4	ENSG00000162433.15	ENST00000545314.5:ENST00000395334.6:ENST00000327299.8	protein_coding	protein_coding	protein_coding	protein_coding	7	206	2	2.23138	2.905455	3.57953	0.0543528	0.00280868	0.152057	0.0290371
chr17	28553940	28554033	6873732	0	-	0.55914	(0.523,0.58]	chr17	697106	7	UTR3	UTR3:EXON_MRNA	PIGS	ENSG00000087111.21	ENST00000268758.13:ENST00000395346.6:ENST00000308360.8:ENST00000492429.2:ENST00000487231.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	66	2	2.88392	2.90524	2.92656	0.0586821	0.0289226	0.155604	0.124
chr19	943117	943217	7185277	0	+	0.6	(0.58,1]	chr19	730741	100	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	130	2	2.51731	2.905025	3.2927399999999998	0.0156878	0.0108437	0.0880112	0.0707085
chr7	4717249	4717349	3309691	0	+	0.66	(0.58,1]	chr7	320808	340	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.78186	2.9046849999999997	3.02751	0.0385189	0.0342923	0.13449	0.131324
chr11	68396319	68396418	4882925	0	+	0.626263	(0.58,1]	chr11	470578	59	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	60	2	2.71042	2.90433	3.09824	0.0396128	0.0341637	0.143388	0.125129
chr3	66018998	66019098	1815672	0	-	0.42	(0.419,0.45]	chr3	187318	99	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	256	2	2.58655	2.9043	3.22205	0.0159697	0.0115924	0.0863405	0.0733761
chr12	26529251	26529351	5398516	0	-	0.53	(0.523,0.58]	chr12	528527	336	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	8	197	2	2.66504	2.9042899999999996	3.14354	0.0198503	0.00633995	0.0963687	0.0501889
chr8	17765557	17765656	3946073	0	-	0.414141	(0.39,0.419]	chr8	376990	70	INTRON	INTRON	MTUS1	ENSG00000129422.15	ENST00000381869.5:ENST00000693296.1:ENST00000262102.10:ENST00000523718.5:ENST00000518755.1:ENST00000518891.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	73	2	2.84832	2.9039400000000004	2.95956	0.0583678	0.0375279	0.155373	0.139823
chr1	48225095	48225195	120950	0	+	0.58	(0.523,0.58]	chr1	15164	3	SS5_PROX	SS5_PROX:INTRON	SLC5A9	ENSG00000117834.13	ENST00000425816.5:ENST00000533824.5:ENST00000236495.9:ENST00000493837.6:ENST00000438567.7:ENST00000441260.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	64	2	2.57767	2.9033350000000002	3.229	0.090356	0.0152072	0.186369	0.0861813
chr10	21737332	21737432	4458923	0	+	0.53	(0.523,0.58]	chr10	427082	17	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	64	2	2.57767	2.9033350000000002	3.229	0.090356	0.0152072	0.186369	0.0861813
chr2	72968347	72968446	1188476	0	-	0.686869	(0.58,1]	chr2	128800	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SFXN5	ENSG00000144040.13	ENST00000272433.7:ENST00000461352.5:ENST00000474528.5:ENST00000495208.5:ENST00000482289.5:ENST00000490056.5:ENST00000411783.5:ENST00000410065.5:ENST00000482542.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	76	2	2.7038	2.903065	3.10233	0.0648563	0.00607723	0.162218	0.0487928
chr19	947705	947805	7185323	0	+	0.59	(0.58,1]	chr19	730741	146	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	91	2	2.342	2.9021600000000003	3.46232	0.023878	0.0178328	0.111721	0.0915706
chr21	29306321	29306421	7603713	0	+	0.32	(0.29,0.33]	chr21	794428	6	INTRON	INTRON	BACH1	ENSG00000156273.16	ENST00000548219.5:ENST00000550131.5:ENST00000547141.5:ENST00000546469.5:ENST00000286800.8:ENST00000399921.5:ENST00000548467.1:ENST00000451655.5:ENST00000447177.5:ENST00000435072.1	protein_coding	protein_coding	protein_coding	protein_coding	2	68	2	2.71956	2.901885	3.08421	0.0442313	0.0418118	0.153511	0.136752
chr3	37862199	37862278	1443265	0	+	0.696203	(0.58,1]	chr3	153953	1	CDS_START	CDS_START:CDS:EXON_MRNA	CTDSPL	ENSG00000144677.15	ENST00000273179.10:ENST00000443503.6:ENST00000435525.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	127	2	2.6131	2.901865	3.19063	0.0132754	0.0123529	0.0787251	0.0764248
chr10	42593705	42593804	4674953	0	-	0.444444	(0.419,0.45]	chr10	445874	11	CDS	CDS:EXON_MRNA:INTRON	ZNF33B	ENSG00000196693.15	ENST00000462075.1:ENST00000486187.5:ENST00000465206.5:ENST00000613419.4:ENST00000359467.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	149	2	2.32277	2.901805	3.48084	0.0283681	0.0211932	0.114796	0.104043
chr3	30637646	30637746	1433403	0	+	0.44	(0.419,0.45]	chr3	153006	44	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4:ENST00000673250.1:ENST00000672866.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	194	2	2.53958	2.90163	3.26368	0.0474234	0.0038026	0.143936	0.0355882
chr10	103716082	103716182	4757261	0	-	0.66	(0.58,1]	chr10	454791	226	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	58	2	2.84993	2.90153	2.95313	0.0435972	0.0297842	0.139245	0.126591
chr4	123398813	123398913	2122601	0	+	0.64	(0.58,1]	chr4	215782	3	SS5_PROX	SS5_PROX:INTRON	SPRY1	ENSG00000164056.11	ENST00000610581.4:ENST00000651917.1:ENST00000505319.5:ENST00000339241.1:ENST00000507703.1:ENST00000622283.1	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.84993	2.90153	2.95313	0.0435972	0.0297842	0.139245	0.126591
chr12	132955742	132955842	5542089	0	-	0.57	(0.523,0.58]	chr12	547065	1	SS5_PROX	SS5_PROX:INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	64	2	2.6197	2.901245	3.18279	0.0853454	0.0168396	0.181766	0.0919482
chr7	74498902	74499002	3391816	0	+	0.51	(0.485,0.523]	chr7	327343	444	INTRON	INTRON	GTF2IRD1	ENSG00000006704.11	ENST00000265755.7:ENST00000424337.7:ENST00000455841.6	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	2.77877	2.90107	3.02337	0.0682166	0.023933	0.164526	0.111785
chr11	70584229	70584329	5060115	0	-	0.5	(0.485,0.523]	chr11	492663	809	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	66	2	2.88614	2.900755	2.91537	0.0583792	0.0298565	0.155373	0.126732
chr19	34385996	34386096	7243210	0	+	0.59	(0.58,1]	chr19	741718	40	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	85	2	2.09276	2.900505	3.70825	0.0619333	0.0111705	0.180615	0.0716525
chr7	23410863	23410963	3552609	0	-	0.48	(0.45,0.485]	chr7	343215	54	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	89	2	2.87419	2.89913	2.92407	0.061784	0.0124115	0.158872	0.0765738
chr11	71137923	71138023	5065679	0	-	0.6	(0.58,1]	chr11	492790	185	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.7038	2.89891	3.09402	0.0648563	0.0174733	0.162218	0.0928044
chr20	37506830	37506929	7559836	0	-	0.50505	(0.485,0.523]	chr20	789576	30	INTRON	INTRON	BLCAP	ENSG00000166619.15	ENST00000411780.1:ENST00000467603.1	protein_coding	processed_transcript	protein_coding	processed_transcript	4	104	2	2.4435	2.898465	3.35343	0.0282341	0.0220947	0.11427	0.107801
chr17	38746628	38746721	6895642	0	-	0.580645	(0.58,1]	chr17	700405	1	INTRON	INTRON	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	3	76	2	2.18715	2.8976100000000002	3.60807	0.0781652	0.00495688	0.175203	0.0425347
chr15	40106204	40106304	6235218	0	-	0.49	(0.485,0.523]	chr15	613041	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	BMF	ENSG00000104081.14	ENST00000354670.9:ENST00000397573.5:ENST00000561360.5:ENST00000561282.5:ENST00000558774.5:ENST00000559701.5:ENST00000557870.1:ENST00000560430.1	protein_coding	protein_coding	protein_coding	protein_coding	3	91	2	2.48786	2.896915	3.30597	0.0579645	0.012958	0.154685	0.0778899
chr7	130909216	130909316	3711068	0	-	0.58	(0.523,0.58]	chr7	356708	245	INTRON	INTRON	ENSG00000226380	ENSG00000226380.9	ENST00000432045.6:ENST00000447307.5:ENST00000418546.1	lncRNA	lncRNA	lncRNA	lncRNA	5	149	2	2.27461	2.8969050000000003	3.5192	0.0797024	0.00138005	0.176933	0.0178384
chr4	185772172	185772271	2371924	0	-	0.575758	(0.523,0.58]	chr4	237051	13	EXON_MRNA	EXON_MRNA:INTRON	SORBS2	ENSG00000154556.19	ENST00000284776.11:ENST00000695409.1:ENST00000319471.13:ENST00000437304.6:ENST00000449407.6:ENST00000355634.9:ENST00000451974.6:ENST00000393528.7:ENST00000487184.2:ENST00000695410.1:ENST00000319454.10:ENST00000695411.1:ENST00000470685.5:ENST00000439914.5:ENST00000444771.5:ENST00000450341.5:ENST00000430503.5:ENST00000445115.5:ENST00000457247.5:ENST00000456596.5:ENST00000425679.5:ENST00000439049.5:ENST00000451958.5:ENST00000444781.5:ENST00000414724.5:ENST00000419063.5:ENST00000393523.6:ENST00000420158.5:ENST00000421639.5:ENST00000493709.5:ENST00000457934.5:ENST00000431902.5:ENST00000415274.5:ENST00000435480.5:ENST00000432655.5:ENST00000451701.5:ENST00000428330.5:ENST00000464975.5:ENST00000464819.5:ENST00000478249.5:ENST00000429056.5:ENST00000463104.5:ENST00000456060.5:ENST00000476878.1:ENST00000462661.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	90	2	2.39285	2.896555	3.40026	0.0376513	0.0262178	0.140049	0.110264
chr2	118109510	118109609	882906	0	+	0.414141	(0.39,0.419]	chr2	99978	13	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	INSIG2	ENSG00000125629.16	ENST00000245787.9:ENST00000485520.5:ENST00000471186.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	712	2	2.51474	2.896	3.27726	0.00755602	0.00689733	0.0560712	0.0553728
chr7	23414791	23414887	3552649	0	-	0.645833	(0.58,1]	chr7	343216	17	EXON_MRNA	EXON_MRNA:INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	168	2	2.70139	2.895895	3.0904	0.0230555	0.00228763	0.102982	0.0253261
chr19	6692323	6692423	7322665	0	-	0.47	(0.45,0.485]	chr19	756435	12	INTRON	INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000695653.1:ENST00000695654.1:ENST00000695692.1:ENST00000695652.1:ENST00000695655.1:ENST00000598805.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	186	2	2.63367	2.895705	3.15774	0.0206283	0.00882959	0.0983934	0.0616768
chr20	17628562	17628657	7531890	0	-	0.652632	(0.58,1]	chr20	785999	5	INTRON	INTRON	RRBP1	ENSG00000125844.17	ENST00000360807.8:ENST00000377807.6:ENST00000246043.8:ENST00000377813.6:ENST00000455029.3:ENST00000495501.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	76	2	2.22208	2.8951450000000003	3.56821	0.074035	0.00550024	0.171168	0.0454065
chr16	50625144	50625224	6452181	0	+	0.525	(0.523,0.58]	chr16	639919	3	SS3_PROX	SS3_PROX:INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	4	117	2	2.53372	2.895055	3.25639	0.0541346	0.00513089	0.151733	0.0435186
chr11	70745182	70745282	5061733	0	-	0.59	(0.58,1]	chr11	492701	273	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	57	2	2.87471	2.89482	2.91493	0.0495478	0.0259506	0.146562	0.116361
chr8	22558789	22558886	3771880	0	+	0.56701	(0.523,0.58]	chr8	362926	2	INTRON	INTRON	SORBS3	ENSG00000120896.14	ENST00000240123.12:ENST00000517500.5:ENST00000517535.5:ENST00000523402.5:ENST00000520563.3:ENST00000524057.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	105	2	2.80981	2.8944549999999998	2.9791	0.0364868	0.0263235	0.139793	0.11063
chr12	111578268	111578368	5500187	0	-	0.46	(0.45,0.485]	chr12	541405	135	INTRON	INTRON	ATXN2	ENSG00000204842.18	ENST00000642389.2:ENST00000608853.5:ENST00000672613.1:ENST00000673436.1:ENST00000643669.2:ENST00000616825.4:ENST00000389153.10:ENST00000550104.5:ENST00000483311.6:ENST00000672335.1:ENST00000673557.1:ENST00000673283.1:ENST00000673449.1:ENST00000535949.5:ENST00000542287.6:ENST00000644883.1:ENST00000647305.1:ENST00000671792.1:ENST00000392645.6:ENST00000672105.1:ENST00000549455.1:ENST00000548492.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	107	2	2.45567	2.8938800000000002	3.33209	0.0308842	0.0223895	0.119556	0.108193
chrX	9567042	9567142	7843470	0	+	0.54	(0.523,0.58]	chrX	822423	61	INTRON	INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1:ENST00000452824.5:ENST00000415293.6:ENST00000683056.1:ENST00000647060.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	66	2	2.86937	2.893685	2.918	0.0558053	0.0324455	0.154188	0.130548
chr11	96234097	96234197	5112477	0	-	0.43	(0.419,0.45]	chr11	496566	1402	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	2.8723	2.893425	2.91455	0.06467	0.0367198	0.162218	0.139793
chr3	172087387	172087487	1627941	0	+	0.35	(0.33,0.36]	chr3	170535	401	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	91	2	2.64926	2.893345	3.13743	0.0423503	0.0238991	0.13762	0.111785
chr7	5384785	5384885	3535912	0	-	0.56	(0.523,0.58]	chr7	341475	64	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000413081.1	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	2.70025	2.89297	3.08569	0.0763549	0.020773	0.174544	0.102713
chr2	65395078	65395178	1171806	0	-	0.6	(0.58,1]	chr2	127582	145	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	4	101	2	2.48127	2.892	3.30273	0.0346335	0.0107069	0.126423	0.0700635
chr19	1411174	1411273	7187458	0	+	0.616162	(0.58,1]	chr19	731286	7	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	77	2	2.43115	2.891005	3.35086	0.0309513	0.0218816	0.127822	0.101015
chrX	120438955	120439054	8096630	0	-	0.343434	(0.33,0.36]	chrX	844121	26	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5:ENST00000371335.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	93	2	2.60488	2.891005	3.17713	0.090445	0.00720496	0.186505	0.0543254
chr10	131918088	131918187	4616197	0	+	0.555556	(0.523,0.58]	chr10	441069	51	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	88	2	2.30272	2.8908	3.47888	0.076523	0.00856566	0.174882	0.0612
chr1	61092778	61092878	146205	0	+	0.46	(0.45,0.485]	chr1	17139	42	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	171	2	2.6228	2.890545	3.15829	0.0491986	0.00285753	0.146142	0.0294352
chr7	47476806	47476905	3588576	0	-	0.40404	(0.39,0.419]	chr7	346123	237	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	3	97	2	2.36037	2.89007	3.41977	0.0772058	0.0116434	0.175203	0.0736274
chr16	89436019	89436119	6661194	0	-	0.4	(0.39,0.419]	chr16	666753	43	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	159	2	2.33771	2.889875	3.44204	0.0284392	0.0172156	0.114979	0.0923809
chr14	39273754	39273853	5792239	0	+	0.353535	(0.33,0.36]	chr14	567494	59	INTRON	INTRON	MIA2	ENSG00000150527.18	ENST00000553728.1:ENST00000640607.2:ENST00000554392.5:ENST00000555716.5:ENST00000341749.7:ENST00000557038.5:ENST00000396165.8:ENST00000556990.1:ENST00000396158.6:ENST00000280083.7:ENST00000341502.9:ENST00000556148.5:ENST00000348007.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	150	2	2.12569	2.889755	3.65382	0.0792023	0.00215831	0.176258	0.024217
chr1	1222544	1222643	380412	0	-	0.686869	(0.58,1]	chr1	42841	13	INTRON	INTRON	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000403997.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	74	2	2.82468	2.888905	2.95313	0.0435972	0.0123866	0.139245	0.0765738
chr6	30614602	30614702	3117319	0	-	0.45	(0.419,0.45]	chr6	302531	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PPP1R10	ENSG00000204569.10	ENST00000376511.7:ENST00000484449.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	221	2	2.64549	2.88878	3.13207	0.0254585	0.0086488	0.108727	0.0612699
chr7	79453850	79453943	3402816	0	+	0.774194	(0.58,1]	chr7	328675	1	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MAGI2-AS3	ENSG00000234456.10	ENST00000616796.4:ENST00000429408.6:ENST00000683943.1:ENST00000426835.6:ENST00000446159.6:ENST00000663669.1:ENST00000661940.1:ENST00000616192.5:ENST00000657546.1:ENST00000655337.2:ENST00000668746.1:ENST00000629211.2:ENST00000613892.4:ENST00000612949.5:ENST00000619135.4:ENST00000655795.1:ENST00000669576.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	74	2	2.7859	2.88835	2.9908	0.0409591	0.0136245	0.136191	0.0811816
chr6	52553024	52553124	3148208	0	-	0.5	(0.485,0.523]	chr6	307028	168	INTRON	INTRON	TRAM2	ENSG00000065308.5	ENST00000182527.4	protein_coding	protein_coding	protein_coding	protein_coding	4	112	2	2.30762	2.88764	3.46766	0.0573061	0.0089247	0.154343	0.0620271
chr11	12782830	12782930	4802730	0	+	0.51	(0.485,0.523]	chr11	460563	180	INTRON	INTRON	TEAD1	ENSG00000187079.20	ENST00000527636.7:ENST00000334310.10:ENST00000527575.6	protein_coding	protein_coding	protein_coding	protein_coding	3	88	2	2.30509	2.886375	3.46766	0.0761321	0.0089247	0.174484	0.0620271
chr19	55635413	55635512	7293423	0	+	0.676768	(0.58,1]	chr19	750914	5	UTR5	UTR5:EXON_MRNA	ZNF580:ZNF581	ENSG00000213015.9:ENSG00000171425.10	ENST00000592881.1:ENST00000587252.5	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.78186	2.88633	2.9908	0.0409591	0.0342923	0.136191	0.13449
chr17	72560018	72560118	6963911	0	-	0.51	(0.485,0.523]	chr17	710389	256	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	4	103	2	2.69272	2.88612	3.07952	0.0436257	0.0123762	0.139286	0.0765576
chr9	114156512	114156610	4225710	0	+	0.561224	(0.523,0.58]	chr9	400740	1	INTRON	INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8	protein_coding	protein_coding	protein_coding	protein_coding	3	85	2	2.84901	2.8846	2.92019	0.0617545	0.0117692	0.158869	0.0743709
chr14	103102772	103102872	5921839	0	+	0.67	(0.58,1]	chr14	579204	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000559116.1:ENST00000560925.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	56	2	2.79178	2.884455	2.97713	0.0565563	0.0226795	0.154343	0.108193
chr6	169671655	169671755	3304605	0	-	0.62	(0.58,1]	chr6	319945	8	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	74	2	2.70505	2.8841799999999997	3.06331	0.036259	0.0165599	0.127941	0.0917029
chr6	44442375	44442474	2922330	0	+	0.393939	(0.39,0.419]	chr6	287790	63	INTRON	INTRON	CDC5L	ENSG00000096401.8	ENST00000371477.4	protein_coding	protein_coding	protein_coding	protein_coding	2	71	2	2.86613	2.8837	2.90127	0.0665161	0.0339406	0.162469	0.133629
chr19	940124	940224	7185247	0	+	0.6	(0.58,1]	chr19	730741	70	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	102	2	2.76261	2.8834850000000003	3.00436	0.0297581	0.00785951	0.116461	0.0576181
chr2	235591022	235591122	1063508	0	+	0.51	(0.485,0.523]	chr2	115656	661	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	127	2	2.66833	2.883425	3.09852	0.021396	0.0211923	0.104042	0.100242
chr2	118099177	118099276	882795	0	+	0.373737	(0.36,0.39]	chr2	99952	20	INTRON	INTRON	INSIG2	ENSG00000125629.16	ENST00000411929.5:ENST00000245787.9:ENST00000485520.5:ENST00000471186.5:ENST00000467223.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	152	2	1.83072	2.88306	3.9354	0.0981257	0.00347533	0.192473	0.0336331
chr21	42847245	42847344	7675444	0	-	0.545455	(0.523,0.58]	chr21	802287	36	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	12	294	2	2.71198	2.88302	3.05406	0.0408931	0.00139336	0.136191	0.0179827
chr10	46806410	46806510	4484747	0	+	0.44	(0.419,0.45]	chr10	428921	41	INTRON	INTRON	BMS1P1	ENSG00000204177.11	ENST00000580094.5:ENST00000688259.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	7	202	2	2.80948	2.8821950000000003	2.95491	0.0336089	0.00677596	0.124319	0.0522952
chr16	85586033	85586133	6518933	0	+	0.6	(0.58,1]	chr16	646396	293	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.84993	2.8821950000000003	2.91446	0.0464528	0.0297842	0.143232	0.126591
chr2	235529737	235529837	1062895	0	+	0.59	(0.58,1]	chr2	115656	48	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	2.84993	2.8821950000000003	2.91446	0.0464528	0.0297842	0.143232	0.126591
chr2	75548387	75548487	1194663	0	-	0.53	(0.523,0.58]	chr2	129875	218	INTRON	INTRON	EVA1A	ENSG00000115363.14	ENST00000485891.1:ENST00000490746.5:ENST00000233712.5:ENST00000393913.8:ENST00000410113.5:ENST00000410071.5:ENST00000432649.5:ENST00000486696.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	85	2	2.71726	2.88204	3.04682	0.0459721	0.0188054	0.142664	0.0980631
chr13	75393690	75393790	5727121	0	-	0.53	(0.523,0.58]	chr13	561722	165	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.48975	2.88176	3.27377	0.101574	0.0137592	0.196431	0.0814923
chr9	123884817	123884917	4401442	0	-	0.36	(0.33,0.36]	chr9	419733	54	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000394215.7:ENST00000373620.7:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding	3	98	2	2.19524	2.8813500000000003	3.56746	0.0586798	0.0214172	0.176098	0.100331
chr9	129609378	129609478	4250924	0	+	0.65	(0.58,1]	chr9	404742	2	SS5_PROX	SS5_PROX:INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	3	80	2	2.61273	2.880915	3.1491	0.0388117	0.0154006	0.131324	0.0869771
chr14	19094810	19094909	5754288	0	+	0.484848	(0.45,0.485]	chr14	564239	10	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000619938.1:ENST00000644980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	5	121	2	2.33449	2.8807400000000003	3.42699	0.0265227	0.0221786	0.111258	0.108193
chr17	77483729	77483829	6805219	0	+	0.58	(0.523,0.58]	chr17	686820	15	EXON_MRNA	EXON_MRNA:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	63	2	2.57767	2.88023	3.18279	0.090356	0.0168396	0.186369	0.0919482
chr6	52574097	52574197	3148419	0	-	0.5	(0.485,0.523]	chr6	307028	379	INTRON	INTRON	TRAM2	ENSG00000065308.5	ENST00000182527.4	protein_coding	protein_coding	protein_coding	protein_coding	3	91	2	2.28678	2.879925	3.47307	0.046853	0.0231672	0.156896	0.103245
chr6	144630964	144631064	3023377	0	+	0.5	(0.485,0.523]	chr6	295440	470	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000367526.8	protein_coding	protein_coding	protein_coding	protein_coding	4	108	2	2.14677	2.8799	3.61303	0.0733061	0.00630038	0.17026	0.0501647
chr16	75250568	75250668	6644626	0	-	0.6	(0.58,1]	chr16	664450	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	BCAR1	ENSG00000050820.17	ENST00000162330.10:ENST00000393422.6:ENST00000562556.5:ENST00000535626.6:ENST00000538440.6:ENST00000418647.7:ENST00000420641.7:ENST00000393420.10:ENST00000568864.1:ENST00000564028.1:ENST00000569006.1:ENST00000561970.1:ENST00000563323.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	2.45703	2.87988	3.30273	0.0933945	0.0107069	0.188571	0.0700635
chr2	160453745	160453845	1293088	0	-	0.48	(0.45,0.485]	chr2	138809	209	INTRON	INTRON	RBMS1	ENSG00000153250.21	ENST00000348849.8:ENST00000474820.5:ENST00000491781.5:ENST00000477486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	115	2	2.29509	2.879125	3.46316	0.0609536	0.00952494	0.158506	0.0650078
chr2	71342636	71342736	828973	0	+	0.41	(0.39,0.419]	chr2	93515	4	INTRON	INTRON	ZNF638	ENSG00000075292.19	ENST00000494621.5:ENST00000410075.5:ENST00000466975.5:ENST00000466330.5:ENST00000437658.2:ENST00000464375.5:ENST00000475743.1:ENST00000409544.5:ENST00000455226.5:ENST00000454278.5:ENST00000264447.9:ENST00000454122.1:ENST00000417778.5:ENST00000487707.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	177	2	2.60521	2.8785	3.15179	0.0231524	0.0130717	0.103205	0.078545
chr19	6708523	6708617	7322847	0	-	0.542553	(0.523,0.58]	chr19	756501	2	INTRON	INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695654.1:ENST00000695692.1:ENST00000695652.1:ENST00000695655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	132	2	1.93892	2.877625	3.8163299999999998	0.0419316	0.012872	0.149108	0.0772995
chr14	89256009	89256109	6026658	0	-	0.56	(0.523,0.58]	chr14	591432	248	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	193	2	2.58075	2.87752	3.17429	0.0188133	0.00790375	0.0939295	0.057762
chr6	3138946	3139042	2828526	0	+	0.479167	(0.45,0.485]	chr6	277600	9	EXON_MRNA	EXON_MRNA:INTRON	BPHL	ENSG00000137274.13	ENST00000434640.5:ENST00000430655.6:ENST00000424847.6:ENST00000433912.5:ENST00000380379.10:ENST00000490918.5:ENST00000380375.4:ENST00000488487.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	65	2	2.53391	2.877135	3.22036	0.0985287	0.016408	0.193064	0.0911382
chr14	103104787	103104838	5921864	0	+	0.72549	(0.58,1]	chr14	579215	2	CDS	CDS:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	55	2	2.40217	2.87634	3.35051	0.100879	0.00953058	0.196131	0.0650078
chr9	14847770	14847869	4280196	0	-	0.40404	(0.39,0.419]	chr9	408991	13	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	175	2	2.84695	2.87608	2.90521	0.0343712	0.0073325	0.125842	0.0550721
chr6	169696562	169696662	3304860	0	-	0.53	(0.523,0.58]	chr6	319967	11	INTRON	INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1:ENST00000474018.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	102	2	2.70525	2.876035	3.04682	0.0459721	0.0118488	0.142664	0.0746945
chr14	23522000	23522100	5757174	0	+	0.6	(0.58,1]	chr14	564963	72	INTRON	INTRON	ZFHX2-AS1	ENSG00000157306.14	ENST00000556354.5:ENST00000553985.1:ENST00000554403.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	55	2	2.6577	2.8758600000000003	3.09402	0.0695799	0.0174733	0.167028	0.0928044
chr19	1641969	1642068	7306929	0	-	0.434343	(0.419,0.45]	chr19	753295	92	INTRON	INTRON	TCF3	ENSG00000071564.17	ENST00000344749.9:ENST00000611869.5:ENST00000262965.12:ENST00000588136.7:ENST00000453954.6:ENST00000395423.7:ENST00000587235.6:ENST00000586318.1	protein_coding	protein_coding	protein_coding	protein_coding	4	115	2	2.41875	2.87475	3.33075	0.0356124	0.026950000000000002	0.127588	0.119337
chr5	139653662	139653762	2549697	0	+	0.62	(0.58,1]	chr5	253168	21	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	3	75	2	2.22208	2.87465	3.52722	0.074035	0.00611467	0.171168	0.0489549
chr11	64766704	64766801	5049534	0	-	0.587629	(0.58,1]	chr11	490376	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000443908.5:ENST00000413725.5:ENST00000433274.6:ENST00000486867.1:ENST00000477596.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	56	2	2.83384	2.874385	2.91493	0.0529065	0.0259506	0.14912	0.116361
chr11	70583229	70583329	5060105	0	-	0.61	(0.58,1]	chr11	492663	799	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	56	2	2.83384	2.874385	2.91493	0.0529065	0.0259506	0.14912	0.116361
chr3	49780576	49780676	1773985	0	-	0.46	(0.45,0.485]	chr3	183906	318	INTRON	INTRON	IP6K1	ENSG00000176095.12	ENST00000321599.9:ENST00000395238.5:ENST00000613416.4:ENST00000468463.5:ENST00000460540.1:ENST00000498149.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	123	2	2.82397	2.87402	2.92407	0.0358512	0.0124115	0.127853	0.0765738
chr4	23795626	23795723	2208644	0	-	0.319588	(0.29,0.33]	chr4	223244	38	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	PPARGC1A	ENSG00000109819.9	ENST00000509702.5:ENST00000264867.7:ENST00000613098.4:ENST00000506055.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	84	2	2.79173	2.8735549999999996	2.95538	0.0510239	0.0163525	0.148503	0.0909775
chr17	82004144	82004244	6815338	0	+	0.71	(0.58,1]	chr17	688640	69	INTRON	INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	301	2	2.80721	2.87341	2.93961	0.0148409	0.0013248	0.0832621	0.0173147
chr22	28475269	28475369	7779783	0	-	0.57	(0.523,0.58]	chr22	815741	323	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.66054	2.8731150000000003	3.08569	0.0806884	0.020773	0.177452	0.102713
chr4	10099935	10100034	2195649	0	-	0.545455	(0.523,0.58]	chr4	222412	4	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	2.66054	2.8731150000000003	3.08569	0.0806884	0.020773	0.177452	0.102713
chr7	47525836	47525936	3589071	0	-	0.46	(0.45,0.485]	chr7	346138	185	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	2.61676	2.873085	3.12941	0.0883035	0.0199365	0.183874	0.100864
chr2	11482781	11482881	719688	0	+	0.83	(0.58,1]	chr2	84083	4	SS5_PROX	SS5_PROX:INTRON	GREB1	ENSG00000196208.14	ENST00000628795.2	protein_coding	protein_coding	protein_coding	protein_coding	6	120	2	1.6588	2.8715550000000003	4.08431	0.0677297	0.00525202	0.193274	0.0476984
chr11	96243395	96243495	5112570	0	-	0.57	(0.523,0.58]	chr11	496566	1495	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	5	149	2	2.73052	2.87119	3.01186	0.0287869	0.00944557	0.115991	0.0650078
chr19	2338430	2338526	7189511	0	+	0.59375	(0.58,1]	chr19	731795	5	EXON_LNCRNA	EXON_LNCRNA:SS3_PROX:INTRON	SPPL2B	ENSG00000005206.17	ENST00000585725.2:ENST00000621568.4:ENST00000613503.5:ENST00000614794.4:ENST00000610743.4:ENST00000618220.4:ENST00000593243.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	88	2	2.44972	2.870725	3.29173	0.0243429	0.0184955	0.106588	0.096816
chr1	235320716	235320816	691120	0	-	0.46	(0.45,0.485]	chr1	81362	596	INTRON	INTRON	ARID4B	ENSG00000054267.22	ENST00000349213.7:ENST00000366603.6:ENST00000264183.9:ENST00000421364.5:ENST00000491632.5:ENST00000418304.1:ENST00000466653.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	130	2	1.78219	2.870435	3.95868	0.0697503	0.0107799	0.195085	0.0705587
chr17	6693262	6693345	6846003	0	-	0.301205	(0.29,0.33]	chr17	693301	1	SS3_PROX	SS3_PROX:INTRON	SLC13A5	ENSG00000141485.17	ENST00000433363.7:ENST00000293800.10:ENST00000381074.8:ENST00000573648.5:ENST00000572727.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	2.71956	2.8703950000000003	3.02123	0.0461219	0.0442313	0.153511	0.143055
chr22	50393294	50393392	7754167	0	+	0.581633	(0.58,1]	chr22	812494	9	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9	protein_coding	protein_coding	protein_coding	protein_coding	6	138	2	2.58575	2.87033	3.15491	0.0142368	0.00941356	0.0817691	0.0648709
chr1	212760490	212760590	657248	0	-	0.63	(0.58,1]	chr1	77490	205	INTRON	INTRON	NSL1	ENSG00000117697.15	ENST00000366977.8:ENST00000366978.5:ENST00000366976.3:ENST00000626725.1	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.7038	2.87028	3.03676	0.0648563	0.0198789	0.162218	0.100864
chr11	61273816	61273907	5041317	0	-	0.615385	(0.58,1]	chr11	488767	1	INTRON	INTRON	VWCE	ENSG00000167992.14	ENST00000335613.10:ENST00000301770.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	55	2	2.7038	2.87028	3.03676	0.0648563	0.0198789	0.162218	0.100864
chr16	2166136	2166236	6372964	0	+	0.63	(0.58,1]	chr16	629429	2	SS5_PROX	SS5_PROX:INTRON	TRAF7	ENSG00000131653.13	ENST00000565383.5:ENST00000569686.5:ENST00000326181.11:ENST00000567653.5:ENST00000564067.5:ENST00000567645.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	55	2	2.7038	2.87028	3.03676	0.0648563	0.0198789	0.162218	0.100864
chr20	49149486	49149586	7572611	0	-	0.39	(0.36,0.39]	chr20	791289	132	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	3	93	2	2.70325	2.8700650000000003	3.03688	0.0824711	0.0105366	0.179396	0.0691536
chr16	14091123	14091222	6399592	0	+	0.525253	(0.523,0.58]	chr16	632159	114	INTRON	INTRON	MRTFB	ENSG00000186260.17	ENST00000571589.6:ENST00000574998.5:ENST00000572400.5:ENST00000574045.5:ENST00000575537.5:ENST00000318282.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	64	2	2.81323	2.8698949999999996	2.92656	0.0650388	0.0289226	0.162385	0.124
chr16	81614019	81614118	6509436	0	+	0.545455	(0.523,0.58]	chr16	645921	31	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5:ENST00000565029.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	84	2	2.78812	2.86971	2.9513	0.0531089	0.0160129	0.149478	0.0894586
chr21	37073473	37073573	7617412	0	+	0.67	(0.58,1]	chr21	795678	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	116	2	1.80071	2.8692200000000003	3.93773	0.0503597	0.00708574	0.162514	0.0558168
chr1	17670189	17670289	54913	0	+	0.65	(0.58,1]	chr1	5603	52	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	58	2	2.71042	2.868965	3.02751	0.0396128	0.0385189	0.143388	0.131324
chr1	91013551	91013651	525644	0	-	0.36	(0.33,0.36]	chr1	61801	308	INTRON	INTRON	ZNF644	ENSG00000122482.22	ENST00000370440.5:ENST00000337393.10:ENST00000347275.9:ENST00000361321.5:ENST00000467231.5:ENST00000498303.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	122	2	2.61015	2.868655	3.12716	0.0507502	0.00812378	0.148503	0.0587857
chr8	133254883	133254980	4083842	0	-	0.484536	(0.45,0.485]	chr8	388256	4	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000519278.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000517331.5:ENST00000522377.5:ENST00000676444.1:ENST00000676222.1:ENST00000674925.1:ENST00000676124.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	460	2	2.14074	2.868055	3.59537	0.0632663	0.00367244	0.183518	0.0389784
chr3	172050742	172050841	1627574	0	+	0.252525	[0,0.29]	chr3	170535	34	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	106	2	2.35273	2.86798	3.38323	0.0615527	0.00340145	0.158684	0.033036
chr12	122098261	122098361	5343571	0	+	0.57	(0.523,0.58]	chr12	521864	186	INTRON	INTRON	MLXIP	ENSG00000175727.14	ENST00000319080.12	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.70025	2.86741	3.03457	0.0763549	0.0231444	0.174544	0.109883
chr17	77376001	77376082	6804123	0	+	0.555556	(0.523,0.58]	chr17	686753	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1:ENST00000423034.6:ENST00000590059.5:ENST00000587514.1:ENST00000590586.1:ENST00000592407.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	63	2	2.70025	2.86741	3.03457	0.0763549	0.0231444	0.174544	0.109883
chr14	30573534	30573634	5769410	0	+	0.5	(0.485,0.523]	chr14	565792	123	INTRON	INTRON	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000438909.6:ENST00000544007.5:ENST00000550944.5:ENST00000552488.1:ENST00000648008.1:ENST00000553504.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	116	2	2.30794	2.8671699999999998	3.4264	0.025039	0.0225871	0.108193	0.10758
chr9	134346021	134346121	4260883	0	+	0.68	(0.58,1]	chr9	406311	190	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	59	2	2.63525	2.866745	3.09824	0.0459151	0.0341637	0.154743	0.125129
chr17	80225236	80225336	6806871	0	+	0.6	(0.58,1]	chr17	687275	15	INTRON	INTRON	SLC26A11	ENSG00000181045.15	ENST00000361193.8:ENST00000546047.6:ENST00000411502.7:ENST00000571888.5:ENST00000576126.5:ENST00000572725.5:ENST00000571564.5:ENST00000571176.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	62	2	2.47204	2.8666349999999996	3.26123	0.0623526	0.0257049	0.181127	0.109543
chr8	127848843	127848943	3918331	0	+	0.6	(0.58,1]	chr8	374180	22	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000655594.1	lncRNA	lncRNA	lncRNA	lncRNA	3	76	2	2.50987	2.866625	3.22338	0.0865901	0.00438486	0.182221	0.0393407
chr1	43565900	43565999	107098	0	+	0.676768	(0.58,1]	chr1	13192	116	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	101	2	2.76261	2.86639	2.97017	0.0297581	0.00858469	0.116461	0.0612699
chr16	46907569	46907664	6442660	0	+	0.631579	(0.58,1]	chr16	639013	2	INTRON	INTRON	GPT2	ENSG00000166123.14	ENST00000340124.9:ENST00000562132.5:ENST00000440783.2	protein_coding	protein_coding	protein_coding	protein_coding	4	101	2	2.76261	2.86639	2.97017	0.0297581	0.00858469	0.116461	0.0612699
chr17	55324893	55324991	6757719	0	+	0.377551	(0.36,0.39]	chr17	681735	42	UTR3	UTR3:EXON_MRNA	HLF	ENSG00000108924.14	ENST00000226067.10	protein_coding	protein_coding	protein_coding	protein_coding	8	241	2	2.54444	2.8658	3.18716	0.0154952	0.0122602	0.0849828	0.0758873
chr2	235504041	235504141	1062636	0	+	0.47	(0.45,0.485]	chr2	115651	88	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	126	2	2.76444	2.8656550000000003	2.96687	0.0284105	0.0178454	0.114906	0.0945384
chr1	155667830	155667929	597844	0	-	0.363636	(0.36,0.39]	chr1	70120	61	INTRON	INTRON	YY1AP1	ENSG00000163374.20	ENST00000368339.9:ENST00000295566.8:ENST00000368330.6:ENST00000436865.5:ENST00000359205.9:ENST00000407221.5:ENST00000404643.5:ENST00000361140.8:ENST00000361831.9:ENST00000347088.9:ENST00000354691.9:ENST00000368340.9:ENST00000311573.9:ENST00000442834.6:ENST00000355499.9:ENST00000405763.7:ENST00000488784.5:ENST00000493625.5:ENST00000477470.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	69	2	2.77391	2.864095	2.95428	0.0750023	0.0305895	0.172839	0.126768
chr16	81552479	81552579	6508818	0	+	0.54	(0.523,0.58]	chr16	645911	566	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	65	2	2.80981	2.863905	2.918	0.0558053	0.0364868	0.154188	0.139793
chr3	23825500	23825599	1430987	0	+	0.343434	(0.33,0.36]	chr3	152792	136	INTRON	INTRON	UBE2E1	ENSG00000170142.12	ENST00000306627.8:ENST00000346855.7:ENST00000495141.5:ENST00000442670.5:ENST00000424381.5:ENST00000467766.5:ENST00000475680.5:ENST00000452012.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	68	2	2.83079	2.86319	2.89559	0.0605295	0.0376711	0.158506	0.140049
chr13	113054646	113054732	5656183	0	+	0.488372	(0.485,0.523]	chr13	555188	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	2.70247	2.86292	3.02337	0.0759932	0.023933	0.174411	0.111785
chr17	316033	316133	6821436	0	-	0.56	(0.523,0.58]	chr17	689582	95	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	145	2	2.62778	2.86292	3.09806	0.0342321	0.00764666	0.125369	0.0563517
chr11	65428364	65428464	4871625	0	+	0.51	(0.485,0.523]	chr11	468177	57	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	31	950	2	2.33508	2.86289	3.3907	0.0078686	0.00365783	0.057652	0.0389784
chr6	158561431	158561531	3063909	0	+	0.52	(0.485,0.523]	chr6	297687	8	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	5	131	2	2.21951	2.8624549999999997	3.5054	0.0553368	0.00816275	0.154166	0.0589533
chr5	139657656	139657756	2549737	0	+	0.6	(0.58,1]	chr5	253168	61	INTRON	INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.84993	2.86232	2.87471	0.0495478	0.0297842	0.146562	0.126591
chr17	75971928	75972028	6973952	0	-	0.43	(0.419,0.45]	chr17	711675	112	INTRON	INTRON	ACOX1	ENSG00000161533.12	ENST00000293217.10:ENST00000572047.5:ENST00000573078.5:ENST00000301608.8:ENST00000591857.5:ENST00000588176.5:ENST00000589301.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	95	2	2.61235	2.8619450000000004	3.11154	0.0490796	0.0274539	0.146142	0.119733
chr6	158562530	158562629	3063920	0	+	0.464646	(0.45,0.485]	chr6	297687	19	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	7	182	2	2.53497	2.8611	3.18723	0.019615	0.0112758	0.095549	0.0717097
chr16	74470173	74470273	6640808	0	-	0.58	(0.523,0.58]	chr16	663918	1	SS3_PROX	SS3_PROX:INTRON	GLG1	ENSG00000090863.12	ENST00000205061.9:ENST00000422840.7:ENST00000447066.6:ENST00000562090.5:ENST00000567951.5:ENST00000563432.5:ENST00000566601.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	68	2	2.61478	2.860965	3.10715	0.052707	0.0418959	0.167062	0.136901
chr6	158626545	158626642	3064572	0	+	0.494845	(0.485,0.523]	chr6	297758	4	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	3	87	2	2.33266	2.8608700000000002	3.38908	0.0731249	0.0107186	0.170083	0.0700744
chr7	100634353	100634452	3654950	0	-	0.50505	(0.485,0.523]	chr7	352299	4	INTRON	INTRON	TFR2	ENSG00000106327.13	ENST00000431692.5:ENST00000462107.1:ENST00000223051.8:ENST00000465294.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	86	2	2.4689	2.8594600000000003	3.25002	0.033374	0.0324744	0.130627	0.124113
chr6	143339444	143339541	3016234	0	+	0.515464	(0.485,0.523]	chr6	294912	16	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	AIG1	ENSG00000146416.19	ENST00000646199.1:ENST00000357847.9	protein_coding	protein_coding	protein_coding	protein_coding	3	84	2	2.66833	2.8586850000000004	3.04904	0.0457169	0.0211923	0.142336	0.104042
chr3	171700722	171700821	1957445	0	-	0.464646	(0.45,0.485]	chr3	199006	5	INTRON	INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9:ENST00000481505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	104	2	2.51255	2.8582549999999998	3.20396	0.0377633	0.0197176	0.131324	0.100774
chr14	103104389	103104476	5921859	0	+	0.62069	(0.58,1]	chr14	579214	1	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	87	2	2.54995	2.857805	3.16566	0.0304114	0.0144715	0.11845	0.0834024
chrX	133936451	133936551	8115532	0	-	0.43	(0.419,0.45]	chrX	845529	1015	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	239	2	1.55021	2.857685	4.16516	0.0635027	0.00938072	0.184175	0.0652879
chr12	89350087	89350187	5468488	0	-	0.47	(0.45,0.485]	chr12	537634	1	SS5_PROX	SS5_PROX:INTRON	DUSP6	ENSG00000139318.8	ENST00000279488.8:ENST00000308385.6:ENST00000547291.1:ENST00000547140.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	87	2	2.62266	2.857615	3.09257	0.0447818	0.0243222	0.140478	0.113231
chr8	86414253	86414352	3853839	0	+	0.282828	[0,0.29]	chr8	369757	20	INTRON	INTRON	WWP1	ENSG00000123124.14	ENST00000517970.6:ENST00000265428.4:ENST00000518683.5:ENST00000520374.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	57	2	2.53067	2.857595	3.18452	0.0856331	0.0159504	0.181766	0.0893563
chr17	46938854	46938949	6746869	0	+	0.463158	(0.45,0.485]	chr17	679537	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	GOSR2	ENSG00000108433.17	ENST00000640608.1:ENST00000640792.1:ENST00000640358.1:ENST00000638634.1:ENST00000225567.9:ENST00000623037.2:ENST00000573224.2:ENST00000639985.1:ENST00000576910.7:ENST00000639199.1:ENST00000639365.1:ENST00000638892.1:ENST00000638838.1:ENST00000638216.1:ENST00000638579.1:ENST00000638189.1:ENST00000639066.1:ENST00000640051.2:ENST00000638697.1:ENST00000640443.1:ENST00000640711.1:ENST00000638219.1:ENST00000639388.1:ENST00000640495.1:ENST00000638374.1:ENST00000640138.1:ENST00000572403.5:ENST00000640068.1:ENST00000393456.7:ENST00000640723.1:ENST00000638468.1:ENST00000639713.1:ENST00000640871.1:ENST00000640866.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	199	2	2.08985	2.85663	3.62341	0.0705783	0.00116044	0.168159	0.0157704
chr3	78819765	78819865	1835701	0	-	0.37	(0.36,0.39]	chr3	188602	725	INTRON	INTRON	ROBO1	ENSG00000169855.21	ENST00000464233.6:ENST00000436010.6:ENST00000618846.4:ENST00000495273.5:ENST00000467549.5	protein_coding	protein_coding	protein_coding	protein_coding	3	91	2	2.7459	2.856575	2.96725	0.0573348	0.0201393	0.154343	0.101501
chr16	89293393	89293493	6659739	0	-	0.69	(0.58,1]	chr16	666648	12	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	100	2	2.22208	2.8549800000000003	3.48788	0.074035	0.00208277	0.171168	0.0237357
chr13	98538896	98538996	5747910	0	-	0.52	(0.485,0.523]	chr13	563357	170	INTRON	INTRON	STK24	ENSG00000102572.15	ENST00000539966.6:ENST00000397517.6:ENST00000491878.5:ENST00000481288.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	62	2	2.49197	2.854875	3.21778	0.10114	0.0157761	0.196131	0.0884237
chr19	23324973	23325073	7358033	0	-	0.45	(0.419,0.45]	chr19	762771	145	INTRON	INTRON	ZNF91	ENSG00000167232.14	ENST00000596528.1:ENST00000596989.1	protein_coding	processed_transcript	protein_coding	processed_transcript	2	74	2	2.7072600000000002	2.854775	3.00229	0.0572793	0.0496323	0.160725	0.154343
chr9	101403070	101403168	4204550	0	+	0.428571	(0.419,0.45]	chr9	399181	27	INTRON	INTRON	ZNF189	ENSG00000136870.11	ENST00000339664.7:ENST00000374861.7:ENST00000259395.4:ENST00000615466.1	protein_coding	protein_coding	protein_coding	protein_coding	2	73	2	2.7644	2.8543950000000002	2.94439	0.062072	0.0447981	0.15958	0.154539
chr9	133855586	133855686	4428954	0	-	0.62	(0.58,1]	chr9	423304	209	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	4	101	2	2.80931	2.854285	2.89926	0.0273431	0.0102831	0.112372	0.0678667
chr9	129501309	129501407	4250790	0	+	0.489796	(0.485,0.523]	chr9	404726	25	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	85	2	2.62192	2.853905	3.08589	0.0849566	0.00799823	0.181766	0.0580954
chr19	34390795	34390895	7243258	0	+	0.55	(0.523,0.58]	chr19	741718	88	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	205	2	1.79799	2.853625	3.90926	0.0561612	0.00486002	0.171933	0.0456282
chr20	58445727	58445827	7498117	0	+	0.43	(0.419,0.45]	chr20	781915	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	VAPB	ENSG00000124164.16	ENST00000475243.6:ENST00000265619.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	70	2	2.68635	2.85337	3.02039	0.0876314	0.0276403	0.183437	0.120359
chr17	7106699	7106799	6847696	0	-	0.51	(0.485,0.523]	chr17	693404	3	SS5_PROX	SS5_PROX:INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6	protein_coding	protein_coding	protein_coding	protein_coding	3	85	2	2.51105	2.853225	3.1954	0.0364043	0.029737800000000002	0.128173	0.126591
chr12	7101300	7101397	5364678	0	-	0.608247	(0.58,1]	chr12	525793	9	INTRON	INTRON	C1RL	ENSG00000139178.12	ENST00000545280.5:ENST00000266542.9:ENST00000544702.5:ENST00000534950.1:ENST00000543933.5:ENST00000537833.6:ENST00000534969.2	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	2	54	2	2.40217	2.85245	3.30273	0.100879	0.0107069	0.196131	0.0700635
chr6	158628890	158628990	3064596	0	+	0.58	(0.523,0.58]	chr6	297763	4	SS5_PROX	SS5_PROX:INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	3	85	2	2.18685	2.8517400000000004	3.51663	0.0903217	0.00782908	0.186369	0.0574276
chr1	12608876	12608976	402693	0	-	0.54	(0.523,0.58]	chr1	46226	127	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	105	2	2.07909	2.85168	3.62427	0.0812034	0.0060311	0.178089	0.0484641
chr6	158019391	158019491	3059686	0	+	0.52	(0.485,0.523]	chr6	297373	12	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	3	84	2	2.70247	2.851085	2.9997	0.0759932	0.00986385	0.174411	0.0664239
chr11	70886106	70886206	5063148	0	-	0.63	(0.58,1]	chr11	492728	131	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000645599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	2.47204	2.8510549999999997	3.23007	0.0623526	0.0271644	0.181127	0.112113
chr17	17830663	17830762	6865830	0	-	0.666667	(0.58,1]	chr17	695923	67	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	3	80	2	2.66444	2.8506	3.03676	0.0354508	0.0198789	0.127188	0.100864
chr6	158038646	158038745	3059884	0	+	0.69697	(0.58,1]	chr6	297390	46	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	88	2	2.26544	2.850345	3.43525	0.0284795	0.0187495	0.123012	0.0936297
chr2	42193431	42193530	773281	0	+	0.373737	(0.36,0.39]	chr2	88922	234	INTRON	INTRON	EML4	ENSG00000143924.19	ENST00000318522.10:ENST00000402711.6:ENST00000409040.1:ENST00000482660.1:ENST00000401738.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	127	2	2.77223	2.84983	2.92743	0.0418815	0.0135168	0.136901	0.0810342
chr6	158566026	158566126	3063955	0	+	0.45	(0.419,0.45]	chr6	297687	54	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	4	120	2	2.01056	2.8498099999999997	3.68906	0.0603226	0.0204916	0.178428	0.0979776
chrX	71216781	71216877	7903340	0	+	0.552083	(0.523,0.58]	chrX	827967	18	UTR5	UTR5:EXON_MRNA:INTRON	GJB1	ENSG00000169562.13	ENST00000674844.1:ENST00000674549.1:ENST00000374029.2:ENST00000675209.1:ENST00000675368.1:ENST00000647424.1:ENST00000675609.1:ENST00000646835.1:ENST00000447581.2	protein_coding	protein_coding	protein_coding	protein_coding	5	145	2	2.65789	2.84953	3.04117	0.0325488	0.00879505	0.122226	0.0615125
chr1	43597976	43598053	107431	0	+	0.74026	(0.58,1]	chr1	13243	4	CDS	CDS:EXON_MRNA:INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	3	76	2	2.44544	2.84938	3.25332	0.0516128	0.0120565	0.148503	0.0754623
chr5	82305881	82305981	2474439	0	+	0.33	(0.29,0.33]	chr5	246857	4	SS5_PROX	SS5_PROX:INTRON	ATP6AP1L	ENSG00000205464.13	ENST00000380167.8:ENST00000643922.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	2	70	2	2.44033	2.84924	3.25815	0.072701	0.0316508	0.199502	0.121016
chr2	239337192	239337292	1392082	0	-	0.56	(0.523,0.58]	chr2	148752	127	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	66	2	2.68276	2.849215	3.01567	0.0482042	0.0464998	0.156036	0.144601
chr6	30549899	30549998	3117068	0	-	0.535354	(0.523,0.58]	chr6	302417	20	INTRON	INTRON	GNL1	ENSG00000204590.13	ENST00000376621.8:ENST00000462708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	66	2	2.68276	2.849215	3.01567	0.0482042	0.0464998	0.156036	0.144601
chr9	133971990	133972090	4430125	0	-	0.54	(0.523,0.58]	chr9	423331	324	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	2.68276	2.849215	3.01567	0.0482042	0.0464998	0.156036	0.144601
chr17	38920174	38920274	6730083	0	+	0.56	(0.523,0.58]	chr17	676475	15	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000318008.11:ENST00000435347.7	protein_coding	protein_coding	protein_coding	protein_coding	4	106	2	2.14435	2.8488800000000003	3.55341	0.0737044	0.00716661	0.17051	0.0541871
chr8	133295947	133296047	4084286	0	-	0.64	(0.58,1]	chr8	388362	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000537882.3:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000522890.5:ENST00000519580.6:ENST00000520943.5:ENST00000521544.5:ENST00000522738.1:ENST00000523892.5:ENST00000676375.1:ENST00000674804.1:ENST00000674605.1:ENST00000675983.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	306	2	2.66286	2.848395	3.03393	0.0183006	0.00581566	0.0958973	0.0503745
chr15	98732718	98732817	6194172	0	+	0.494949	(0.485,0.523]	chr15	609659	243	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	150	2	2.78853	2.84828	2.90803	0.0259896	0.0122695	0.109673	0.0759225
chr6	3399419	3399518	3087485	0	-	0.515152	(0.485,0.523]	chr6	299778	216	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	62	2	2.62192	2.8482	3.07448	0.0849566	0.0214987	0.181766	0.10537
chr21	43720643	43720738	7623798	0	+	0.589474	(0.58,1]	chr21	796688	9	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000476084.1:ENST00000470029.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	56	2	2.78186	2.84816	2.91446	0.0464528	0.0342923	0.143232	0.13449
chr17	38921071	38921171	6730092	0	+	0.58	(0.523,0.58]	chr17	676475	24	UTR3	UTR3:EXON_MRNA	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000318008.11:ENST00000435347.7	protein_coding	protein_coding	protein_coding	protein_coding	2	62	2	2.66054	2.847555	3.03457	0.0806884	0.0231444	0.177452	0.109883
chr3	71170949	71171049	1827134	0	-	0.37	(0.36,0.39]	chr3	188150	389	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648426.1:ENST00000498215.7:ENST00000484350.5:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000468577.6:ENST00000649513.1:ENST00000649431.2:ENST00000647614.1:ENST00000649760.1:ENST00000650295.1:ENST00000648895.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	91	2	2.73901	2.847295	2.95558	0.0786198	0.0126857	0.175203	0.0772402
chr2	54550698	54550798	799220	0	+	0.4	(0.39,0.419]	chr2	90794	221	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7	protein_coding	protein_coding	protein_coding	protein_coding	3	93	2	2.58263	2.84719	3.11175	0.0970705	0.00887797	0.190588	0.0618231
chrX	9531088	9531188	7843107	0	+	0.52	(0.485,0.523]	chrX	822406	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TBL1X	ENSG00000101849.18	ENST00000407597.7:ENST00000380961.5:ENST00000424279.6:ENST00000645353.2:ENST00000422314.5:ENST00000645686.1:ENST00000646640.1:ENST00000647172.1	protein_coding	protein_coding	protein_coding	protein_coding	4	100	2	2.4435	2.8467599999999997	3.25002	0.033374	0.0220947	0.124113	0.107801
chr7	139688261	139688361	3723028	0	-	0.51	(0.485,0.523]	chr7	357498	562	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	3	85	2	2.57989	2.846705	3.11352	0.0899526	0.00747179	0.185791	0.0555092
chr9	34370010	34370109	4296516	0	-	0.545455	(0.523,0.58]	chr9	410622	35	UTR3	UTR3:EXON_MRNA	MYORG	ENSG00000164976.9	ENST00000297625.8	protein_coding	protein_coding	protein_coding	protein_coding	4	103	2	2.15455	2.846345	3.53814	0.0408176	0.020829	0.146983	0.0990379
chr22	28679321	28679421	7781826	0	-	0.64	(0.58,1]	chr22	815750	3	SS5_PROX	SS5_PROX:INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7:ENST00000468807.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	74	2	2.43115	2.84619	3.26123	0.0309513	0.0257049	0.127822	0.109543
chr2	152353312	152353412	925644	0	+	0.37	(0.36,0.39]	chr2	103058	172	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	5	132	2	2.81699	2.845405	2.87382	0.0653866	0.00786597	0.162385	0.0576353
chr10	28560033	28560132	4469685	0	+	0.515152	(0.485,0.523]	chr10	427649	216	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	65	2	2.7365	2.8450100000000003	2.95352	0.0528263	0.0423471	0.149195	0.14912
chr20	44410231	44410329	7483023	0	+	0.571429	(0.523,0.58]	chr20	779658	16	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000619550.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	83	2	2.64274	2.84478	3.04682	0.0459721	0.0221922	0.142664	0.108193
chr11	96339682	96339782	5113533	0	-	0.39	(0.36,0.39]	chr11	496566	2458	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	2	74	2	2.5517	2.8447	3.1377	0.0637554	0.0447786	0.184651	0.140478
chr1	61171624	61171724	146998	0	+	0.47	(0.45,0.485]	chr1	17147	387	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	64	2	2.65647	2.8444000000000003	3.03233	0.0837071	0.0244076	0.181508	0.113311
chr16	81488361	81488460	6508175	0	+	0.474747	(0.45,0.485]	chr16	645906	425	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	2.65647	2.8444000000000003	3.03233	0.0837071	0.0244076	0.181508	0.113311
chr8	120738494	120738594	4059288	0	-	0.47	(0.45,0.485]	chr8	386607	442	INTRON	INTRON	SNTB1	ENSG00000172164.15	ENST00000395601.7:ENST00000517992.2:ENST00000648490.1:ENST00000519177.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	149	2	2.22801	2.843755	3.4595	0.0878805	0.00182843	0.183694	0.0216571
chr22	46917642	46917742	7746571	0	+	0.58	(0.523,0.58]	chr22	812232	38	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	101	2	2.26219	2.8431800000000003	3.42417	0.0325618	0.0252027	0.130925	0.108002
chr14	89337253	89337352	6027475	0	-	0.484848	(0.45,0.485]	chr14	591456	36	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	133	2	1.9306	2.8424300000000002	3.75426	0.0444323	0.0153755	0.153534	0.0849828
chr11	71200719	71200818	5066310	0	-	0.464646	(0.45,0.485]	chr11	492802	255	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000482659.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	117	2	2.51062	2.84194	3.17326	0.058349	0.00683957	0.155373	0.0525976
chr10	100999179	100999278	4570113	0	+	0.757576	(0.58,1]	chr10	436340	2	SS5_PROX	SS5_PROX:INTRON	LZTS2	ENSG00000107816.17	ENST00000426584.5:ENST00000370223.7:ENST00000489526.1:ENST00000429732.5:ENST00000481129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	72	2	2.6194	2.841355	3.06331	0.036259	0.0202577	0.127941	0.102015
chr20	36575248	36575348	7471321	0	+	0.62	(0.58,1]	chr20	777919	4	SS5_PROX	SS5_PROX:INTRON	TGIF2	ENSG00000118707.11	ENST00000373874.6:ENST00000373872.9:ENST00000650844.1:ENST00000611732.4:ENST00000558028.5:ENST00000560025.1	protein_coding	protein_coding	protein_coding	protein_coding	5	117	2	2.76261	2.8404350000000003	2.91826	0.0297581	0.0055314	0.116461	0.0456275
chr17	38921470	38921570	6730096	0	+	0.36	(0.33,0.36]	chr17	676475	28	UTR3	UTR3:EXON_MRNA	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000318008.11:ENST00000435347.7	protein_coding	protein_coding	protein_coding	protein_coding	5	145	2	2.31876	2.84005	3.36134	0.0594481	0.00457936	0.157518	0.0404399
chr18	58051360	58051459	7071514	0	+	0.282828	[0,0.29]	chr18	721088	35	INTRON	INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5:ENST00000588516.5:ENST00000456986.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	76	2	2.80363	2.83979	2.87595	0.0568711	0.0123699	0.154343	0.076524
chr19	538245	538345	7184061	0	+	0.62	(0.58,1]	chr19	730433	7	INTRON	INTRON	CDC34	ENSG00000099804.9	ENST00000215574.9:ENST00000586283.6:ENST00000607527.5:ENST00000606065.3:ENST00000606400.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	101	2	2.82468	2.8396049999999997	2.85453	0.0251699	0.0123866	0.107898	0.0765738
chr17	75688080	75688180	6799486	0	+	0.59	(0.58,1]	chr17	685907	159	INTRON	INTRON	SAP30BP	ENSG00000161526.15	ENST00000583170.5:ENST00000584667.6:ENST00000355423.7:ENST00000578354.5:ENST00000577292.5:ENST00000542343.5:ENST00000579877.5:ENST00000293208.13:ENST00000579864.5:ENST00000583737.5:ENST00000578288.5:ENST00000580484.5:ENST00000582022.5:ENST00000580322.5:ENST00000583536.5:ENST00000578909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	73	2	2.48056	2.839395	3.19823	0.0287301	0.0277636	0.12074	0.115888
chr16	84735478	84735577	6514184	0	+	0.353535	(0.33,0.36]	chr16	646283	16	INTRON	INTRON	USP10	ENSG00000103194.16	ENST00000562743.5:ENST00000540269.6:ENST00000563892.5:ENST00000562092.1:ENST00000219473.12:ENST00000570191.5:ENST00000563048.5:ENST00000562283.5:ENST00000563386.5:ENST00000569038.5:ENST00000570053.1:ENST00000566512.1:ENST00000563023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	87	2	2.7184	2.83918	2.95996	0.0551496	0.0206109	0.153649	0.102713
chr15	85232780	85232879	6344864	0	-	0.494949	(0.485,0.523]	chr15	625513	225	INTRON	INTRON	ENSG00000229212	ENSG00000229212.8	ENST00000648573.1:ENST00000560756.5:ENST00000560811.5:ENST00000560405.5:ENST00000558470.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	2	62	2	2.70247	2.836425	2.97038	0.0759932	0.0267011	0.174411	0.118343
chr11	65445040	65445140	4871792	0	+	0.47	(0.45,0.485]	chr11	468177	224	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	49	1316	2	2.72266	2.83589	2.94912	0.0132738	0.00129658	0.0787251	0.0170761
chr11	65442943	65443043	4871771	0	+	0.37	(0.36,0.39]	chr11	468177	203	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	45	1290	2	2.486	2.834955	3.18391	0.00688712	0.0055783	0.0553727	0.0459534
chr10	75474609	75474709	4520904	0	+	0.48	(0.45,0.485]	chr10	432249	230	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.49062	2.83311	3.1756	0.104221	0.0180699	0.19835	0.0953579
chr10	131920084	131920184	4616217	0	+	0.54	(0.523,0.58]	chr10	441069	71	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	64	2	2.74768	2.83284	2.918	0.0558053	0.0411359	0.154188	0.147756
chr16	89434521	89434621	6661179	0	-	0.55	(0.523,0.58]	chr16	666753	28	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	82	2	2.68048	2.832165	2.98385	0.0505794	0.020416	0.148456	0.102668
chr6	166954108	166954206	3302034	0	-	0.469388	(0.45,0.485]	chr6	319750	17	EXON_MRNA	EXON_MRNA:INTRON	RNASET2	ENSG00000026297.17	ENST00000508775.6:ENST00000683770.1:ENST00000611959.2:ENST00000620173.5:ENST00000682774.1:ENST00000684236.1:ENST00000683968.1:ENST00000366855.10:ENST00000421787.5:ENST00000476238.6:ENST00000028008.9:ENST00000478180.6:ENST00000358165.7:ENST00000683158.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	420	2	2.69444	2.831985	2.96953	0.0471378	0.0103578	0.156915	0.0686575
chr11	70803920	70804019	5062322	0	-	0.50505	(0.485,0.523]	chr11	492707	50	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5:ENST00000460048.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	2.49197	2.831775	3.17158	0.10114	0.017456	0.196131	0.0928044
chr13	99525889	99525988	5639528	0	+	0.494949	(0.485,0.523]	chr13	553820	54	INTRON	INTRON	TM9SF2	ENSG00000125304.10	ENST00000642475.1:ENST00000376387.5:ENST00000463709.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	2.49197	2.831775	3.17158	0.10114	0.017456	0.196131	0.0928044
chr14	89256308	89256408	6026661	0	-	0.52	(0.485,0.523]	chr14	591432	251	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	113	2	2.60554	2.831635	3.05773	0.0483104	0.00856934	0.144683	0.0612055
chr6	167016647	167016746	3071577	0	+	0.474747	(0.45,0.485]	chr6	298646	27	INTRON	INTRON	CEP43:ENSG00000272980	ENSG00000213066.13:ENSG00000272980.4	ENST00000622353.4:ENST00000366847.9:ENST00000609590.1:ENST00000349556.4	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron	5	147	2	2.59523	2.831505	3.06778	0.0380223	0.00883868	0.131324	0.0617274
chr17	17829967	17830067	6865823	0	-	0.61	(0.58,1]	chr17	695923	60	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	4	87	2	2.22558	2.830415	3.43525	0.0311606	0.0187495	0.127822	0.0936297
chr7	139304536	139304636	3504699	0	+	0.4	(0.39,0.419]	chr7	337822	68	UTR3	UTR3:EXON_MRNA	UBN2	ENSG00000157741.15	ENST00000473989.8	protein_coding	protein_coding	protein_coding	protein_coding	6	181	2	2.63064	2.829885	3.02913	0.0391719	0.0064741	0.131991	0.0503748
chr3	196470544	196470642	1988024	0	-	0.55102	(0.523,0.58]	chr3	202391	19	UTR3	UTR3:EXON_MRNA	RNF168	ENSG00000163961.4	ENST00000318037.3	protein_coding	protein_coding	protein_coding	protein_coding	4	106	2	1.95511	2.8293549999999996	3.7036	0.0607183	0.0156851	0.179481	0.0852152
chr3	172083293	172083393	1627900	0	+	0.55	(0.523,0.58]	chr3	170535	360	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	84	2	2.43762	2.82918	3.22074	0.0350559	0.0343548	0.134666	0.12704
chr16	50559218	50559318	6451519	0	+	0.5	(0.485,0.523]	chr16	639902	6	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	99	2	2.38174	2.82916	3.27658	0.0319818	0.0253525	0.121593	0.115383
chr5	1103107	1103206	2608882	0	-	0.585859	(0.58,1]	chr5	259667	85	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	2.70505	2.82909	2.95313	0.0435972	0.0165599	0.139245	0.0917029
chr17	17822418	17822518	6865745	0	-	0.53	(0.523,0.58]	chr17	695915	15	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	138	2	2.62686	2.828645	3.03043	0.0241245	0.0142983	0.106588	0.0833845
chr4	151258593	151258693	2351869	0	-	0.66	(0.58,1]	chr4	235107	307	INTRON	INTRON	SH3D19	ENSG00000109686.19	ENST00000604030.7:ENST00000604440.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	55	2	2.78186	2.828285	2.87471	0.0495478	0.0342923	0.146562	0.13449
chr14	23522798	23522898	5757182	0	+	0.64	(0.58,1]	chr14	564963	80	INTRON	INTRON	ZFHX2-AS1	ENSG00000157306.14	ENST00000556354.5:ENST00000553985.1:ENST00000554403.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	53	2	2.40217	2.827745	3.25332	0.100879	0.0120565	0.196131	0.0754623
chr1	43557928	43558028	107018	0	+	0.69	(0.58,1]	chr1	13192	36	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.56085	2.827435	3.09402	0.0803939	0.0174733	0.177452	0.0928044
chr11	70656532	70656632	5060840	0	-	0.52	(0.485,0.523]	chr11	492672	17	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	61	2	2.57989	2.827185	3.07448	0.0899526	0.0214987	0.185791	0.10537
chr11	65434356	65434456	4871685	0	+	0.36	(0.33,0.36]	chr11	468177	117	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	23	689	2	2.79733	2.826505	2.85568	0.0131111	0.00327511	0.0783662	0.0322062
chr17	75977737	75977835	6974012	0	-	0.377551	(0.36,0.39]	chr17	711682	36	INTRON	INTRON	ACOX1	ENSG00000161533.12	ENST00000293217.10:ENST00000572047.5:ENST00000573078.5:ENST00000301608.8:ENST00000591857.5:ENST00000588176.5:ENST00000589301.1:ENST00000576743.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	147	2	2.67645	2.82585	2.97525	0.0484511	0.00735961	0.145074	0.055174
chr8	22387265	22387365	3770221	0	+	0.52	(0.485,0.523]	chr8	362727	74	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	7	174	2	2.7759	2.82552	2.87514	0.0367898	0.00441269	0.129052	0.0393688
chr7	847117	847217	3307216	0	+	0.54	(0.523,0.58]	chr7	320344	32	INTRON	INTRON	SUN1	ENSG00000164828.18	ENST00000452783.6:ENST00000389574.7:ENST00000401592.6:ENST00000413171.6:ENST00000405266.5:ENST00000340926.7:ENST00000425407.6:ENST00000450881.5:ENST00000493681.5:ENST00000471349.1:ENST00000419312.5:ENST00000429178.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	67	2	2.54344	2.8252949999999997	3.10715	0.0599121	0.0418959	0.177269	0.136901
chr11	70742784	70742884	5061709	0	-	0.6	(0.58,1]	chr11	492701	249	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	90	2	2.12324	2.82523	3.52722	0.0642584	0.00611467	0.161669	0.0489549
chr5	32157064	32157164	2630485	0	-	0.48	(0.45,0.485]	chr5	261026	128	INTRON	INTRON	GOLPH3	ENSG00000113384.14	ENST00000265070.7:ENST00000503610.5:ENST00000512668.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	118	2	2.5578	2.825185	3.09257	0.0447818	0.0132015	0.140478	0.0792655
chr7	139705941	139706041	3723205	0	-	0.51	(0.485,0.523]	chr7	357498	739	INTRON	INTRON	HIPK2	ENSG00000064393.16	ENST00000406875.8:ENST00000428878.6:ENST00000342645.7	protein_coding	protein_coding	protein_coding	protein_coding	3	82	2	2.74113	2.82458	2.90803	0.0719691	0.0122695	0.168159	0.0759225
chr17	62001219	62001319	6943086	0	-	0.35	(0.33,0.36]	chr17	708003	55	INTRON	INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	3	87	2	2.68323	2.8245750000000003	2.96592	0.0814187	0.011859	0.178482	0.0746945
chr3	42647059	42647157	1452462	0	+	0.459184	(0.45,0.485]	chr3	155084	12	UTR3	UTR3:EXON_MRNA	NKTR	ENSG00000114857.19	ENST00000429888.5:ENST00000232978.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	223	2	2.6036	2.824195	3.04479	0.0311062	0.00386877	0.119906	0.0361873
chr2	113722419	113722511	1258903	0	-	0.380435	(0.36,0.39]	chr2	135582	7	INTRON	INTRON	SLC35F5	ENSG00000115084.15	ENST00000469702.5:ENST00000245680.7:ENST00000409106.5:ENST00000459683.5:ENST00000470204.2:ENST00000447673.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	92	2	2.381	2.82341	3.26582	0.0423665	0.0369624	0.149195	0.129594
chr16	14875922	14876006	6402505	0	+	0.535714	(0.523,0.58]	chr16	632482	1	SS3_PROX	SS3_PROX:INTRON	NOMO1	ENSG00000103512.16	ENST00000287667.12	protein_coding	protein_coding	protein_coding	protein_coding	3	83	2	2.48104	2.823055	3.16507	0.0382777	0.0313926	0.131324	0.127822
chr2	11184038	11184137	1087755	0	-	0.343434	(0.33,0.36]	chr2	118582	2	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000401753.5	protein_coding	protein_coding	protein_coding	protein_coding	4	118	2	2.35072	2.8228549999999997	3.29499	0.0745285	0.00540177	0.172224	0.0451706
chr17	82003844	82003944	6815335	0	+	0.61	(0.58,1]	chr17	688640	66	INTRON	INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	278	2	2.78403	2.822115	2.8602	0.019693	0.00157168	0.0958249	0.0195133
chr2	42198829	42198929	773335	0	+	0.49	(0.485,0.523]	chr2	88922	288	INTRON	INTRON	EML4	ENSG00000143924.19	ENST00000318522.10:ENST00000402711.6:ENST00000409040.1:ENST00000482660.1:ENST00000401738.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	116	2	2.51957	2.82171	3.12385	0.0408331	0.0193526	0.13606	0.0994526
chr14	34980833	34980932	5958190	0	-	0.484848	(0.45,0.485]	chr14	584010	83	INTRON	INTRON	SRP54-AS1	ENSG00000258704.7	ENST00000692503.1:ENST00000690110.1:ENST00000690001.1:ENST00000688072.1:ENST00000693002.1:ENST00000556355.5:ENST00000555015.5:ENST00000693259.1:ENST00000636540.1:ENST00000556705.6:ENST00000691849.1:ENST00000686430.1:ENST00000686298.1:ENST00000688866.1:ENST00000689842.1:ENST00000554945.1	transcribed_unitary_pseudogene	processed_transcript	transcribed_unitary_pseudogene	processed_transcript:transcribed_unitary_pseudogene	2	64	2	2.76944	2.82135	2.87326	0.0716626	0.033576	0.168159	0.133139
chr2	241341904	241342002	1076078	0	+	0.459184	(0.45,0.485]	chr2	116874	38	INTRON	INTRON	SEPTIN2	ENSG00000168385.18	ENST00000391973.6:ENST00000428282.5:ENST00000360051.7:ENST00000616972.4:ENST00000401990.5:ENST00000407971.5:ENST00000494824.5:ENST00000466211.5:ENST00000391971.7:ENST00000402092.6:ENST00000464128.5:ENST00000484167.5:ENST00000421717.1:ENST00000481500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	86	2	2.46542	2.8211649999999997	3.17691	0.0393744	0.0337868	0.133182	0.132578
chr3	48426806	48426903	1766702	0	-	0.57732000000000006	(0.523,0.58]	chr3	182283	11	INTRON	INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	314	2	2.34632	2.821155	3.29599	0.0365279	0.00108952	0.128472	0.0150329
chr16	81545581	81545681	6508749	0	+	0.54	(0.523,0.58]	chr16	645911	497	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.66054	2.82106	2.98158	0.0806884	0.0258432	0.177452	0.116361
chr2	11534853	11534953	720212	0	+	0.55	(0.523,0.58]	chr2	84090	2	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000628795.2:ENST00000381486.7	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.66054	2.82106	2.98158	0.0806884	0.0258432	0.177452	0.116361
chr19	940823	940922	7185254	0	+	0.767677	(0.58,1]	chr19	730741	77	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	144	2	2.13564	2.82091	3.50618	0.0287631	0.00702736	0.123764	0.0557511
chr11	77612035	77612116	5083541	0	-	0.493827	(0.485,0.523]	chr11	494639	3	SS5_PROX	SS5_PROX:INTRON	CLNS1A	ENSG00000074201.9	ENST00000526761.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	5	134	2	2.71435	2.82065	2.92695	0.0406421	0.00693985	0.135868	0.05314
chr1	207752906	207753003	328840	0	+	0.628866	(0.58,1]	chr1	37180	2	INTRON	INTRON	CD46	ENSG00000117335.21	ENST00000695779.1:ENST00000695777.1:ENST00000695778.1:ENST00000496723.2:ENST00000695782.1:ENST00000695781.1:ENST00000695780.1:ENST00000636114.2:ENST00000367042.6:ENST00000322875.8:ENST00000322918.9:ENST00000354848.5:ENST00000357714.5:ENST00000358170.6:ENST00000367041.5:ENST00000367047.5:ENST00000695783.1:ENST00000695784.1:ENST00000469535.5:ENST00000493796.5:ENST00000360212.6:ENST00000480003.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	73	2	2.37998	2.820605	3.26123	0.0345705	0.0257049	0.135397	0.109543
chr7	6701012	6701110	3542723	0	-	0.540816	(0.523,0.58]	chr7	342318	2	INTRON	INTRON	ZNF12	ENSG00000164631.19	ENST00000405858.6:ENST00000342651.9:ENST00000394917.3	protein_coding	protein_coding	protein_coding	protein_coding	4	103	2	2.03822	2.820325	3.60243	0.0516351	0.0186731	0.166192	0.0934313
chr15	78925632	78925728	6336920	0	-	0.541667	(0.523,0.58]	chr15	624687	3	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTSH	ENSG00000103811.18	ENST00000677011.1:ENST00000220166.10:ENST00000676639.1:ENST00000676510.1:ENST00000678727.1:ENST00000679334.1:ENST00000679017.1:ENST00000677810.1:ENST00000676763.1:ENST00000678886.1:ENST00000677921.1:ENST00000676596.1:ENST00000678114.1:ENST00000678487.1:ENST00000649928.2:ENST00000527715.6:ENST00000530010.6:ENST00000676671.1:ENST00000534533.6:ENST00000678283.1:ENST00000678841.1:ENST00000679125.1:ENST00000677316.1:ENST00000678031.1:ENST00000678644.1:ENST00000676808.1:ENST00000677207.1:ENST00000676486.1:ENST00000677238.1:ENST00000678281.1:ENST00000678799.1:ENST00000525807.6:ENST00000676588.1:ENST00000528191.6:ENST00000678817.1:ENST00000676880.1:ENST00000528741.6:ENST00000678415.1:ENST00000679172.1:ENST00000533777.5:ENST00000534237.6:ENST00000677448.1:ENST00000677534.1:ENST00000677367.1:ENST00000678397.1:ENST00000679047.1:ENST00000676865.1:ENST00000677102.1:ENST00000677874.1:ENST00000677254.1:ENST00000677936.1:ENST00000678940.1:ENST00000677789.1:ENST00000615999.5:ENST00000677049.1:ENST00000678033.1:ENST00000679211.1:ENST00000676850.1:ENST00000534268.6:ENST00000529861.6:ENST00000676738.1:ENST00000527138.6:ENST00000677320.1:ENST00000529612.6:ENST00000676668.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:non_stop_decay:nonsense_mediated_decay:processed_transcript	4	116	2	2.78812	2.819915	2.85171	0.032571	0.0160129	0.122289	0.0894586
chr8	8352204	8352304	3934128	0	-	0.5	(0.485,0.523]	chr8	376133	122	INTRON	INTRON	PRAG1	ENSG00000275342.5	ENST00000615670.5:ENST00000622241.1	protein_coding	protein_coding	protein_coding	protein_coding	3	85	2	2.33266	2.819315	3.30597	0.0731249	0.012958	0.170083	0.0778899
chr14	54630689	54630789	5820080	0	+	0.4	(0.39,0.419]	chr14	569049	622	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	2.54293	2.8192399999999997	3.09555	0.102111	0.0231436	0.19738	0.109883
chr7	47360994	47361093	3587401	0	-	0.636364	(0.58,1]	chr7	346030	143	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	5	97	2	2.2002	2.8177250000000003	3.43525	0.0247319	0.0187495	0.114418	0.0936297
chr2	235522424	235522524	1062820	0	+	0.54	(0.523,0.58]	chr2	115651	272	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	83	2	2.15636	2.81762	3.47888	0.094263	0.00856566	0.188571	0.0612
chr6	157313983	157314083	3298431	0	-	0.61	(0.58,1]	chr6	319197	206	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	11	240	2	2.62793	2.81752	3.00711	0.0211025	0.00150329	0.0996078	0.0188758
chr14	19303915	19304014	5928401	0	-	0.535354	(0.523,0.58]	chr14	580401	54	EXON_LNCRNA	EXON_LNCRNA:INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	11	259	2	2.39619	2.8174599999999996	3.23873	0.0116823	0.0101043	0.0736117	0.0674636
chr22	43014320	43014420	7824278	0	-	0.62	(0.58,1]	chr22	820636	120	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000453643.5:ENST00000445706.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	53	2	2.6577	2.817415	2.97713	0.0695799	0.0226795	0.167028	0.108193
chr21	37083353	37083451	7617512	0	+	0.408163	(0.39,0.419]	chr21	795681	19	UTR5	UTR5:EXON_MRNA:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2:ENST00000399017.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	122	2	2.52253	2.81714	3.11175	0.0612884	0.00887797	0.158506	0.0618231
chr6	11232303	11232403	3093688	0	-	0.55	(0.523,0.58]	chr6	300438	4	SS5_PROX	SS5_PROX:INTRON	NEDD9	ENSG00000111859.17	ENST00000379446.10:ENST00000620854.4:ENST00000448183.6:ENST00000504387.5:ENST00000379433.5:ENST00000513989.5:ENST00000397378.7:ENST00000508546.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	64	2	2.68276	2.81703	2.9513	0.0531089	0.0464998	0.156036	0.149478
chr1	45201757	45201857	464535	0	-	0.32	(0.29,0.33]	chr1	55667	1132	INTRON	INTRON	ZSWIM5	ENSG00000162415.7	ENST00000359600.6:ENST00000464588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	60	2	2.52708	2.8169750000000002	3.10687	0.0944237	0.0204009	0.188571	0.102656
chr16	89294786	89294886	6659753	0	-	0.63	(0.58,1]	chr16	666648	26	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	221	2	2.69455	2.8166700000000002	2.93879	0.0185399	0.00218519	0.0929479	0.0244386
chr22	37564182	37564282	7720408	0	+	0.53	(0.523,0.58]	chr22	808260	4	SS5_PROX	SS5_PROX:INTRON	CDC42EP1	ENSG00000128283.7	ENST00000249014.5:ENST00000430687.1:ENST00000415670.1	protein_coding	protein_coding	protein_coding	protein_coding	4	101	2	2.1168	2.81643	3.51606	0.044099	0.0216194	0.153511	0.100615
chr11	70586629	70586729	5060139	0	-	0.38	(0.36,0.39]	chr11	492663	833	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	66	2	2.62895	2.816285	3.00362	0.0909522	0.027769	0.187477	0.12074
chr11	65445340	65445440	4871795	0	+	0.6	(0.58,1]	chr11	468177	227	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	140	3166	2	2.64773	2.816165	2.9846	0.00761337	4.95237e-4	0.0580199	0.00865935
chr6	158562230	158562330	3063917	0	+	0.54	(0.523,0.58]	chr6	297687	16	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	10	261	2	2.34632	2.81594	3.28556	0.0365279	0.00180437	0.128472	0.0215053
chr14	89256508	89256608	6026663	0	-	0.57	(0.523,0.58]	chr14	591432	253	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	81	2	2.68048	2.81589	2.9513	0.0531089	0.020416	0.149478	0.102668
chr6	166338944	166339043	3301463	0	-	0.555556	(0.523,0.58]	chr6	319660	72	INTRON	INTRON	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000478705.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	2.74768	2.8158	2.88392	0.0586821	0.0411359	0.155604	0.147756
chr12	124835895	124835995	5537073	0	-	0.61	(0.58,1]	chr12	546095	178	INTRON	INTRON	SCARB1	ENSG00000073060.17	ENST00000339570.9:ENST00000261693.11:ENST00000679605.1:ENST00000681686.1:ENST00000680926.1:ENST00000680556.1:ENST00000680982.1:ENST00000680596.1:ENST00000415380.6:ENST00000681117.1:ENST00000538291.5:ENST00000546215.5:ENST00000535005.5:ENST00000539320.3:ENST00000545493.1:ENST00000541661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	86	2	2.71042	2.8151200000000003	2.91982	0.0396128	0.0223021	0.143388	0.102226
chr1	39004436	39004532	93320	0	+	0.333333	(0.33,0.36]	chr1	11025	5	UTR3	UTR3:EXON_MRNA	AKIRIN1	ENSG00000174574.16	ENST00000432648.8:ENST00000372984.8:ENST00000446189.6	protein_coding	protein_coding	protein_coding	protein_coding	8	201	2	2.78134	2.8148600000000004	2.84838	0.0349506	0.00550246	0.12704	0.0454065
chr20	25495078	25495177	7539904	0	-	0.59596	(0.58,1]	chr20	787018	32	INTRON	INTRON	NINL	ENSG00000101004.15	ENST00000278886.11:ENST00000422516.5:ENST00000461642.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	96	2	2.55909	2.81475	3.07041	0.0425829	0.00661304	0.13762	0.0512951
chr6	37823314	37823414	2908877	0	+	0.56	(0.523,0.58]	chr6	285643	29	INTRON	INTRON	ZFAND3	ENSG00000156639.12	ENST00000287218.9:ENST00000373391.6:ENST00000474522.5	protein_coding	protein_coding	protein_coding	protein_coding	3	81	2	2.64274	2.813295	2.98385	0.0505794	0.0221922	0.148456	0.108193
chr22	50424014	50424114	7754483	0	+	0.62	(0.58,1]	chr22	812541	4	SS5_PROX	SS5_PROX:INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9:ENST00000401672.7:ENST00000427222.2	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	2.52834	2.8132900000000003	3.09824	0.0341637	0.0249502	0.125129	0.114418
chr11	70789248	70789348	5062174	0	-	0.44	(0.419,0.45]	chr11	492701	714	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	92	2	2.54153	2.8132599999999996	3.08499	0.0509743	0.0316792	0.148503	0.128518
chr2	127333087	127333187	1265102	0	-	0.4	(0.39,0.419]	chr2	136349	22	INTRON	INTRON	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5:ENST00000344908.9	protein_coding	protein_coding	protein_coding	protein_coding	6	171	2	2.4464	2.8131250000000003	3.17985	0.0221122	0.0187966	0.101753	0.0980631
chr19	949401	949501	7185340	0	+	0.64	(0.58,1]	chr19	730741	163	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	136	2	2.35	2.81311	3.27622	0.017212	0.0112073	0.0923809	0.0718473
chr10	42552726	42552825	4674752	0	-	0.646465	(0.58,1]	chr10	445860	23	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ZNF37BP	ENSG00000234420.8	ENST00000452075.7:ENST00000692055.1:ENST00000689225.1:ENST00000686311.1:ENST00000686673.1:ENST00000688789.1:ENST00000690905.1:ENST00000435805.7:ENST00000687308.1:ENST00000692559.1:ENST00000690442.1:ENST00000473592.1:ENST00000691808.1:ENST00000692594.1:ENST00000691366.1:ENST00000689409.1:ENST00000685241.1:ENST00000684925.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	2	56	2	2.63525	2.813025	2.9908	0.0459151	0.0409591	0.154743	0.136191
chr22	50726816	50726915	7755459	0	+	0.616162	(0.58,1]	chr22	812807	23	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	56	2	2.63525	2.813025	2.9908	0.0459151	0.0409591	0.154743	0.136191
chr19	1416734	1416829	7187516	0	+	0.715789	(0.58,1]	chr19	731289	9	EXON_MRNA	EXON_MRNA:INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5:ENST00000587833.5:ENST00000589484.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	85	2	2.30423	2.8129150000000003	3.3216	0.0260615	0.0230709	0.116811	0.102982
chrX	109687826	109687925	8091009	0	-	0.424242	(0.419,0.45]	chrX	843698	20	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000505855.1:ENST00000508092.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	165	2	1.80161	2.81261	3.82361	0.051162	0.0165146	0.164913	0.0880991
chr16	61743197	61743297	6601414	0	-	0.48	(0.45,0.485]	chr16	660366	156	INTRON	INTRON	CDH8	ENSG00000150394.14	ENST00000299345.10:ENST00000585315.5:ENST00000577730.5:ENST00000577390.6:ENST00000584337.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	23	570	2	2.6424	2.812065	2.98173	0.023296999999999998	0.00142324	0.103669	0.0181811
chr6	16714084	16714184	3103986	0	-	0.48	(0.45,0.485]	chr6	300893	462	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6:ENST00000495178.1:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	2.69512	2.81169	2.92826	0.0794176	0.0301249	0.176565	0.126768
chr3	30612966	30613065	1433155	0	+	0.383838	(0.36,0.39]	chr3	152992	56	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4	protein_coding	protein_coding	protein_coding	protein_coding	13	272	2	2.01559	2.81133	3.60707	0.025007	0.0105809	0.114418	0.0696346
chr11	70777957	70778057	5062061	0	-	0.49	(0.485,0.523]	chr11	492701	601	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	63	2	2.7365	2.8113200000000003	2.88614	0.0583792	0.0423471	0.155373	0.149195
chr21	38806629	38806718	7620608	0	+	0.786517	(0.58,1]	chr21	796135	3	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ETS2	ENSG00000157557.13	ENST00000360214.8:ENST00000665212.1:ENST00000667466.1:ENST00000360938.8:ENST00000432278.5:ENST00000666778.1	protein_coding	protein_coding	protein_coding	protein_coding	4	109	2	2.43115	2.81089	3.19063	0.0309513	0.0132754	0.127822	0.0787251
chr19	46774882	46774971	7391443	0	-	0.41573	(0.39,0.419]	chr19	767897	1	UTR3	UTR3:EXON_MRNA	SLC1A5	ENSG00000105281.12	ENST00000542575.6:ENST00000594991.5:ENST00000434726.6:ENST00000412532.6	protein_coding	protein_coding	protein_coding	protein_coding	3	89	2	2.69557	2.8104500000000003	2.92533	0.0837871	0.0136122	0.181557	0.0811697
chr20	381683	381766	7414316	0	+	0.746988	(0.58,1]	chr20	772273	2	SS5_PROX	SS5_PROX:INTRON	TRIB3	ENSG00000101255.12	ENST00000615226.4:ENST00000217233.9:ENST00000449710.5:ENST00000422053.3	protein_coding	protein_coding	protein_coding	protein_coding	12	265	2	2.51088	2.810285	3.10969	0.022667	0.00109259	0.102982	0.0150728
chr17	38727796	38727896	6729361	0	+	0.44	(0.419,0.45]	chr17	676371	23	UTR3	UTR3:EXON_MRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5	protein_coding	protein_coding	protein_coding	protein_coding	5	154	2	2.42034	2.81025	3.20016	0.0566365	0.00752259	0.154343	0.0558305
chr8	120792877	120792977	4059832	0	-	0.4	(0.39,0.419]	chr8	386607	986	INTRON	INTRON	SNTB1	ENSG00000172164.15	ENST00000395601.7:ENST00000517992.2:ENST00000648490.1:ENST00000519177.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	180	2	2.13876	2.81012	3.48148	0.0816588	0.00204519	0.17899	0.0234155
chr12	9114321	9114414	5368187	0	-	0.215054	[0,0.29]	chr12	526445	4	INTRON	INTRON	A2M	ENSG00000175899.15	ENST00000318602.12:ENST00000539638.5:ENST00000404455.2:ENST00000467091.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	185	2	2.58036	2.8098850000000004	3.03941	0.0422491	0.00205531	0.13762	0.0235218
chr6	157313183	157313283	3298423	0	-	0.58	(0.523,0.58]	chr6	319197	198	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	6	152	2	2.63888	2.8089899999999997	2.9791	0.0263235	0.0101192	0.11063	0.0675603
chr2	62997565	62997665	816902	0	+	0.26	[0,0.29]	chr2	92205	4	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000496857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	156	2	2.75158	2.80879	2.866	0.0255494	0.00556175	0.109062	0.0458216
chr8	8362179	8362279	3934228	0	-	0.55	(0.523,0.58]	chr8	376133	222	INTRON	INTRON	PRAG1	ENSG00000275342.5	ENST00000615670.5:ENST00000622241.1	protein_coding	protein_coding	protein_coding	protein_coding	8	196	2	2.10933	2.808675	3.50802	0.0541432	0.00264792	0.151733	0.027979
chr3	52537890	52537986	1473731	0	+	0.510417	(0.485,0.523]	chr3	158431	6	INTRON	INTRON	SMIM4	ENSG00000168273.8	ENST00000491607.5:ENST00000482728.1:ENST00000307106.3:ENST00000476842.1:ENST00000477703.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	81	2	2.63059	2.8083299999999998	2.98607	0.0503063	0.0230209	0.148176	0.109585
chr2	237713068	237713167	1070699	0	+	0.646465	(0.58,1]	chr2	115988	41	INTRON	INTRON	LRRFIP1	ENSG00000124831.19	ENST00000308482.14:ENST00000465870.5:ENST00000498053.5:ENST00000289175.10:ENST00000244815.9:ENST00000420665.5:ENST00000392000.4:ENST00000473815.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	54	2	2.78186	2.80785	2.83384	0.0529065	0.0342923	0.14912	0.13449
chr17	55283783	55283868	6757298	0	+	0.576471	(0.523,0.58]	chr17	681707	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000572234.2:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	111	2	2.21516	2.80771	3.40026	0.02755	0.0262178	0.120136	0.110264
chr6	158628307	158628407	3064590	0	+	0.44	(0.419,0.45]	chr6	297760	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	10	290	2	2.65462	2.807665	2.96071	0.0334561	0.00393247	0.124319	0.0367239
chr1	52916273	52916369	485596	0	-	0.489583	(0.485,0.523]	chr1	57733	6	INTRON	INTRON	ECHDC2	ENSG00000121310.17	ENST00000536120.5:ENST00000371522.9:ENST00000460612.5:ENST00000371520.5:ENST00000358358.9:ENST00000476477.6:ENST00000467988.2:ENST00000488268.5:ENST00000544365.5:ENST00000495920.5:ENST00000544531.5:ENST00000480312.6:ENST00000542552.1:ENST00000474789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	117	2	2.70511	2.807585	2.91006	0.0294826	0.0195331	0.116079	0.1
chr4	9875505	9875605	2193550	0	-	0.5	(0.485,0.523]	chr4	222230	401	INTRON	INTRON	SLC2A9	ENSG00000109667.12	ENST00000503803.5:ENST00000512342.5:ENST00000503280.5:ENST00000506583.5:ENST00000264784.8:ENST00000309065.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	85	2	2.28678	2.807525	3.32827	0.046853	0.0294165	0.156896	0.116079
chr16	52504516	52504616	6589434	0	-	0.46	(0.45,0.485]	chr16	658702	285	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	85	2	2.46542	2.80738	3.14934	0.0410767	0.0337868	0.136301	0.133182
chr1	2231600	2231697	4526	0	+	0.484536	(0.45,0.485]	chr1	1044	15	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	4	115	2	2.22801	2.806845	3.38568	0.0878805	0.00400963	0.183694	0.0371192
chr22	24102536	24102627	7695388	0	+	0.549451	(0.523,0.58]	chr22	805525	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CABIN1:ENSG00000232545	ENSG00000099991.18:ENSG00000232545.1	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1:ENST00000444093.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	6	130	2	2.62976	2.8068049999999998	2.98385	0.0505794	0.00825253	0.148456	0.0595122
chr21	5103672	5103772	7635223	0	-	0.5	(0.485,0.523]	chr21	798621	236	INTRON	INTRON	ENSG00000280071	ENSG00000280071.4	ENST00000624810.3:ENST00000625036.3	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.5366	2.8055399999999997	3.07448	0.0953348	0.0214987	0.189038	0.10537
chr16	67966652	67966752	6610216	0	-	0.55	(0.523,0.58]	chr16	661572	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SLC12A4	ENSG00000124067.17	ENST00000422611.6:ENST00000316341.8:ENST00000572037.5:ENST00000541864.6:ENST00000570802.5:ENST00000576616.5:ENST00000573023.6:ENST00000576377.1:ENST00000571299.5:ENST00000572010.5:ENST00000576462.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	112	2	2.69087	2.80553	2.92019	0.0422993	0.0117692	0.13762	0.0743709
chr1	58659103	58659202	496197	0	-	0.323232	(0.29,0.33]	chr1	59127	45	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MYSM1	ENSG00000162601.11	ENST00000655340.1:ENST00000493821.6:ENST00000472487.6:ENST00000622766.1:ENST00000665648.1:ENST00000659812.1:ENST00000659108.1:ENST00000401044.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	97	2	2.62198	2.80533	2.98868	0.0484929	0.0149269	0.145074	0.084859
chr6	158620158	158620257	3064506	0	+	0.59596	(0.58,1]	chr6	297742	100	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	4	95	2	2.44544	2.804785	3.16413	0.0516128	0.00515052	0.148503	0.0436542
chr2	235506938	235507038	1062665	0	+	0.62	(0.58,1]	chr2	115651	117	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	85	2	2.71042	2.8044000000000002	2.89838	0.0396128	0.02321	0.143388	0.10341
chr6	119328276	119328376	3247072	0	-	0.44	(0.419,0.45]	chr6	314557	209	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	2.7886	2.80398	2.81936	0.0766427	0.0405181	0.174882	0.145945
chr10	47533381	47533481	4680516	0	-	0.47	(0.45,0.485]	chr10	446443	95	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	12	304	2	2.73436	2.803495	2.87263	0.019616	0.00454543	0.095549	0.0401487
chr8	122789645	122789745	3909732	0	+	0.48	(0.45,0.485]	chr8	373449	73	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.73276	2.80301	2.87326	0.0754102	0.033576	0.173278	0.133139
chr16	89296080	89296180	6659766	0	-	0.57	(0.523,0.58]	chr16	666648	39	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	123	2	2.22976	2.8028500000000003	3.37594	0.0272868	0.0219563	0.112327	0.107219
chr16	89454091	89454190	6661375	0	-	0.585859	(0.58,1]	chr16	666753	224	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	52	2	2.40217	2.8021599999999998	3.20215	0.100879	0.0136092	0.196131	0.0811697
chr21	43727840	43727939	7623872	0	+	0.626263	(0.58,1]	chr21	796696	41	INTRON	INTRON	PDXK	ENSG00000160209.19	ENST00000398081.5:ENST00000468090.5:ENST00000291565.9:ENST00000398085.7:ENST00000470029.5:ENST00000438837.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.40217	2.8021599999999998	3.20215	0.100879	0.0136092	0.196131	0.0811697
chr22	15820639	15820738	7682931	0	+	0.666667	(0.58,1]	chr22	803568	16	INTRON	INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000447898.5	lncRNA	lncRNA	lncRNA	lncRNA	2	52	2	2.40217	2.8021599999999998	3.20215	0.100879	0.0136092	0.196131	0.0811697
chr18	58046649	58046745	7071466	0	+	0.447917	(0.419,0.45]	chr18	721084	4	EXON_LNCRNA	EXON_LNCRNA:INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5:ENST00000588516.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	416	2	1.96886	2.8020300000000002	3.6352	0.028776	0.00638419	0.123764	0.0529032
chr17	15464064	15464164	6860075	0	-	0.52	(0.485,0.523]	chr17	695067	106	INTRON	INTRON	CDRT4:TVP23C-CDRT4	ENSG00000239704.11:ENSG00000259024.6	ENST00000619038.5:ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	60	2	2.57989	2.80163	3.02337	0.0899526	0.023933	0.185791	0.111785
chr2	101785020	101785120	861506	0	+	0.52	(0.485,0.523]	chr2	97528	861	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.57989	2.80163	3.02337	0.0899526	0.023933	0.185791	0.111785
chr6	166333195	166333294	3301405	0	-	0.606061	(0.58,1]	chr6	319660	14	INTRON	INTRON	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000478705.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	84	2	2.342	2.801615	3.26123	0.0257049	0.023878	0.111721	0.109543
chr15	80091215	80091315	6161989	0	+	0.4	(0.39,0.419]	chr15	606445	155	INTRON	INTRON	ZFAND6	ENSG00000086666.19	ENST00000613266.4:ENST00000561060.5:ENST00000559157.5:ENST00000261749.11:ENST00000561012.5:ENST00000564367.5:ENST00000558494.5:ENST00000618205.4:ENST00000560470.5:ENST00000560228.5:ENST00000559835.5:ENST00000559775.5:ENST00000558688.5:ENST00000560976.5:ENST00000560392.5:ENST00000558390.5:ENST00000558272.5:ENST00000557793.1:ENST00000616533.4:ENST00000558087.5:ENST00000558997.5:ENST00000558724.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	108	2	2.76883	2.801215	2.8336	0.0695649	0.0120397	0.167028	0.0754623
chr17	75977934	75978033	6974014	0	-	0.363636	(0.36,0.39]	chr17	711682	38	INTRON	INTRON	ACOX1	ENSG00000161533.12	ENST00000293217.10:ENST00000572047.5:ENST00000573078.5:ENST00000301608.8:ENST00000591857.5:ENST00000588176.5:ENST00000589301.1:ENST00000576743.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	65	2	2.55061	2.8009649999999997	3.05132	0.10062	0.0252548	0.196131	0.114966
chr8	122788545	122788645	3909721	0	+	0.35	(0.33,0.36]	chr8	373449	62	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6	protein_coding	protein_coding	protein_coding	protein_coding	2	69	2	2.51922	2.799945	3.08067	0.0659899	0.0461365	0.189025	0.14307
chr10	79222472	79222572	4533586	0	+	0.51	(0.485,0.523]	chr10	432457	58	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	6	160	2	2.34518	2.7997750000000003	3.25437	0.0540288	0.00294136	0.151545	0.029997
chr15	98731721	98731821	6194162	0	+	0.5	(0.485,0.523]	chr15	609659	233	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	61	2	2.74113	2.7996499999999997	2.85817	0.0719691	0.0334631	0.168159	0.133139
chr6	119260441	119260541	3246391	0	-	0.3	(0.29,0.33]	chr6	314537	117	INTRON	INTRON	MAN1A1	ENSG00000111885.7	ENST00000368468.4	protein_coding	protein_coding	protein_coding	protein_coding	4	96	2	2.45446	2.799505	3.14455	0.0380088	0.0219101	0.131324	0.107001
chr13	98239893	98239993	5634629	0	+	0.57	(0.523,0.58]	chr13	553474	261	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000376581.9:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	2	64	2	2.61478	2.799315	2.98385	0.052707	0.0505794	0.167062	0.148456
chr9	124499391	124499490	4402719	0	-	0.545455	(0.523,0.58]	chr9	419817	59	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	6	123	2	2.01731	2.799315	3.58132	0.0354235	0.0193579	0.137983	0.0954964
chr17	81563979	81564074	6984922	0	-	0.589474	(0.58,1]	chr17	713722	1	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000572760.5:ENST00000572346.5:ENST00000573519.5:ENST00000573876.1:ENST00000571714.5:ENST00000572824.1:ENST00000573212.5:ENST00000576713.6:ENST00000374747.9	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	2.74846	2.799195	2.84993	0.0605281	0.0297842	0.158506	0.126591
chrX	109689114	109689213	8091022	0	-	0.40404	(0.39,0.419]	chrX	843698	33	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000505855.1:ENST00000508092.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	181	2	2.76328	2.79824	2.8332	0.0317305	0.0103601	0.121316	0.0682598
chr2	186213619	186213719	1339441	0	-	0.3	(0.29,0.33]	chr2	142319	346	INTRON	INTRON	LINC01473	ENSG00000237877.7	ENST00000658984.1:ENST00000658990.1:ENST00000655126.1:ENST00000667839.1:ENST00000670612.1:ENST00000668985.1:ENST00000661574.1:ENST00000666677.1:ENST00000665629.1:ENST00000419719.2:ENST00000667056.1:ENST00000671599.1	lncRNA	lncRNA	lncRNA	lncRNA	3	82	2	2.52708	2.797275	3.06747	0.0944237	0.00855624	0.188571	0.0611796
chr7	73601992	73602091	3602877	0	-	0.606061	(0.58,1]	chr7	347634	19	INTRON	INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1:ENST00000488212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	159	2	2.23753	2.79727	3.35701	0.0155042	0.00953031	0.0872232	0.0658012
chr6	131948570	131948669	3262794	0	-	0.232323	[0,0.29]	chr6	315775	5	UTR3	UTR3:EXON_MRNA	CCN2	ENSG00000118523.6	ENST00000367976.4	protein_coding	protein_coding	protein_coding	protein_coding	16	280	2	1.73058	2.797175	3.86377	0.0641438	8.81595e-4	0.161669	0.0129974
chr19	49103104	49103200	7281137	0	+	0.614583	(0.58,1]	chr19	748269	11	UTR3	UTR3:EXON_MRNA:INTRON	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000595231.5:ENST00000544278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	134	2	1.6373	2.79709	3.95688	0.052875900000000003	0.00681628	0.167062	0.0548279
chr20	63734354	63734450	7509384	0	+	0.697917	(0.58,1]	chr20	783523	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ZGPAT:ENSG00000273154	ENSG00000197114.12:ENSG00000273154.3	ENST00000448100.6:ENST00000355969.11:ENST00000477340.5:ENST00000357119.8:ENST00000369967.7:ENST00000328969.5:ENST00000490623.3:ENST00000472711.5:ENST00000478385.5:ENST00000632538.1:ENST00000484569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	85	2	2.75985	2.7968450000000002	2.83384	0.0529065	0.00845983	0.14912	0.06064
chr19	950798	950897	7185354	0	+	0.414141	(0.39,0.419]	chr19	730741	177	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	67	2	2.7933500000000002	2.79683	2.80031	0.0728013	0.0415789	0.169397	0.148959
chr6	137868036	137868136	3010367	0	+	0.61	(0.58,1]	chr6	294493	3	SS5_PROX	SS5_PROX:INTRON	TNFAIP3	ENSG00000118503.16	ENST00000421450.1:ENST00000612899.5:ENST00000420009.5:ENST00000237289.8:ENST00000433680.1	protein_coding	protein_coding	protein_coding	protein_coding	3	73	2	2.27185	2.7967250000000003	3.3216	0.0433824	0.0230709	0.152119	0.102982
chr3	58010855	58010955	1483062	0	+	0.52	(0.485,0.523]	chr3	159572	16	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	63	2	2.67159	2.7959050000000003	2.92022	0.0555127	0.0478226	0.1588	0.154188
chr7	47379712	47379812	3587589	0	-	0.6	(0.58,1]	chr7	346036	97	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	95	2	2.25618	2.79562	3.33506	0.0701734	0.00321851	0.168023	0.0319521
chrX	30653815	30653915	7858955	0	+	0.6	(0.58,1]	chrX	824180	2	SS5_PROX	SS5_PROX:INTRON	GK	ENSG00000198814.14	ENST00000378943.7:ENST00000378946.7:ENST00000692461.1:ENST00000427190.6:ENST00000378945.7:ENST00000481024.5:ENST00000479048.6:ENST00000487652.5:ENST00000471362.5:ENST00000378941.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	72	2	2.45703	2.7952950000000003	3.13356	0.0933945	0.00559148	0.188571	0.0460395
chr4	186283495	186283591	2173832	0	+	0.53125	(0.523,0.58]	chr4	220288	16	INTRON	INTRON	F11	ENSG00000088926.14	ENST00000403665.7:ENST00000264692.8	protein_coding	protein_coding	protein_coding	protein_coding	6	155	2	2.37065	2.79494	3.21923	0.0193299	0.0173863	0.0994526	0.0901374
chr1	2254860	2254959	4760	0	+	0.555556	(0.523,0.58]	chr1	1052	64	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1:ENST00000478223.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	81	2	2.57767	2.794765	3.01186	0.090356	0.00944557	0.186369	0.0650078
chr1	30957178	30957278	434856	0	-	0.33	(0.29,0.33]	chr1	51492	28	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000527498.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	2.48102	2.793945	3.10687	0.100436	0.0204009	0.196131	0.102656
chr11	65504333	65504432	4871987	0	+	0.434343	(0.419,0.45]	chr11	468193	68	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000616527.4:ENST00000620465.4:ENST00000612781.1:ENST00000618132.1	lncRNA	lncRNA	lncRNA	lncRNA	194	5239	2	2.59938	2.79375	2.98812	0.0185968	0.00121587	0.093212	0.0162693
chr16	89912841	89912938	6526304	0	+	0.639175	(0.58,1]	chr16	647713	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TCF25:ENSG00000267048:MC1R	ENSG00000141002.20:ENSG00000267048.1:ENSG00000258839.4	ENST00000640279.1:ENST00000570217.1:ENST00000539976.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay	2	52	2	2.61009	2.79361	2.97713	0.0747426	0.0226795	0.172361	0.108193
chr12	132955443	132955542	5542086	0	-	0.565657	(0.523,0.58]	chr12	547064	68	INTRON	INTRON	CHFR:ZNF605	ENSG00000072609.18:ENSG00000196458.11	ENST00000536932.5:ENST00000360187.9:ENST00000392321.3:ENST00000331711.11:ENST00000412621.6:ENST00000381215.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	60	2	2.66054	2.7935499999999998	2.92656	0.0806884	0.0289226	0.177452	0.124
chr16	50624785	50624884	6452177	0	+	0.59596	(0.58,1]	chr16	639918	27	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	10	222	2	2.42476	2.79338	3.162	0.0267361	0.0013769400000000001	0.111779	0.0178071
chr11	70786350	70786450	5062145	0	-	0.55	(0.523,0.58]	chr11	492701	685	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	61	2	2.77655	2.79318	2.80981	0.0685533	0.0364868	0.165066	0.139793
chr6	158567025	158567125	3063965	0	+	0.55	(0.523,0.58]	chr6	297687	64	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	8	195	2	2.12049	2.792955	3.46542	0.0531723	0.00296844	0.149651	0.0302035
chr21	44871565	44871663	7678558	0	-	0.377551	(0.36,0.39]	chr21	802773	56	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	193	2	2.61656	2.79275	2.96894	0.057025	0.0184548	0.173546	0.0927766
chr22	28916889	28916988	7705610	0	+	0.50505	(0.485,0.523]	chr22	806317	325	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7	protein_coding	protein_coding	protein_coding	protein_coding	3	80	2	2.74113	2.79232	2.84351	0.0719691	0.0142636	0.168159	0.0833845
chrX	109714467	109714567	8091280	0	-	0.48	(0.45,0.485]	chrX	843713	179	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000508092.5:ENST00000504383.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	194	2	2.5217	2.79203	3.06236	0.0356481	0.0052412	0.127675	0.0443848
chr20	62921660	62921759	7585551	0	-	0.59596	(0.58,1]	chr20	792927	69	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8	protein_coding	protein_coding	protein_coding	protein_coding	5	113	2	2.66444	2.79135	2.91826	0.0354508	0.0055314	0.127188	0.0456275
chr5	139651366	139651466	2549674	0	+	0.71	(0.58,1]	chr5	253167	2	SS5_PROX	SS5_PROX:INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	3	76	2	2.09276	2.790825	3.48889	0.0619333	0.016972	0.180615	0.0889149
chr9	124497609	124497708	4402701	0	-	0.686869	(0.58,1]	chr9	419817	41	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	3	69	2	2.70505	2.78988	2.87471	0.0495478	0.0165599	0.146562	0.0917029
chr16	50624091	50624190	6452170	0	+	0.616162	(0.58,1]	chr16	639918	20	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	4	94	2	2.38507	2.7895649999999996	3.19406	0.057029	0.00474968	0.154343	0.0413976
chr1	2231697	2231795	4527	0	+	0.632653	(0.58,1]	chr1	1044	16	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	2.37998	2.789105	3.19823	0.0345705	0.0287301	0.135397	0.115888
chr2	69814973	69815067	825802	0	+	0.521277	(0.485,0.523]	chr2	93043	3	EXON_MRNA	EXON_MRNA:INTRON	ANXA4	ENSG00000196975.16	ENST00000477632.5:ENST00000409920.5:ENST00000635311.1:ENST00000394295.6:ENST00000471395.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	60	2	2.66276	2.789065	2.91537	0.0803133	0.0298565	0.177452	0.126732
chr10	75478207	75478306	4520940	0	+	0.393939	(0.39,0.419]	chr10	432249	266	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	3	89	2	2.54293	2.78886	3.03479	0.102111	0.0106145	0.19738	0.069619
chr11	65443742	65443842	4871779	0	+	0.56	(0.523,0.58]	chr11	468177	211	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	116	2937	2	2.63672	2.78885	2.94098	0.00712168	0.00228148	0.0560257	0.0252681
chr1	8015992	8016092	390934	0	-	0.5	(0.485,0.523]	chr1	44902	3	SS3_PROX	SS3_PROX:INTRON	ERRFI1	ENSG00000116285.13	ENST00000474874.5:ENST00000377482.10:ENST00000469499.5:ENST00000487559.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	114	2	2.50305	2.7887649999999997	3.07448	0.0419497	0.0214987	0.137072	0.10537
chr10	87879123	87879223	4541643	0	+	0.39	(0.36,0.39]	chr10	433140	1	SS5_PROX	SS5_PROX:INTRON	PTEN	ENSG00000171862.12	ENST00000688308.1:ENST00000693560.1:ENST00000371953.8:ENST00000688158.1:ENST00000686459.1:ENST00000462694.1:ENST00000416679.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	119	2	2.34379	2.7887199999999996	3.23365	0.0785367	0.00662986	0.175203	0.051411
chr19	35004623	35004723	7244906	0	+	0.56	(0.523,0.58]	chr19	742073	14	INTRON	INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	122	2	2.48104	2.788595	3.09615	0.0313926	0.0215502	0.127822	0.100612
chr10	75480705	75480805	4520965	0	+	0.48	(0.45,0.485]	chr10	432249	291	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	4	99	2	2.48439	2.78848	3.09257	0.0447818	0.0210032	0.140478	0.103258
chr2	42190131	42190231	773248	0	+	0.31	(0.29,0.33]	chr2	88922	201	INTRON	INTRON	EML4	ENSG00000143924.19	ENST00000318522.10:ENST00000402711.6:ENST00000409040.1:ENST00000482660.1:ENST00000401738.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	111	2	2.75182	2.7884599999999997	2.8251	0.0368182	0.0151558	0.129147	0.0860239
chr2	235516529	235516629	1062761	0	+	0.57	(0.523,0.58]	chr2	115651	213	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	2.48975	2.78772	3.08569	0.101574	0.020773	0.196431	0.102713
chr20	32377445	32377545	7455880	0	+	0.34	(0.33,0.36]	chr20	776143	50	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	168	2	2.52078	2.786635	3.05249	0.0434247	0.00575454	0.138928	0.0469197
chr16	50600696	50600796	6451934	0	+	0.59	(0.58,1]	chr16	639902	421	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	52	2	2.6577	2.786315	2.91493	0.0695799	0.0259506	0.167028	0.116361
chr17	77468955	77469055	6805068	0	+	0.58	(0.523,0.58]	chr17	686810	20	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	110	2	2.10134	2.786095	3.47085	0.0353452	0.0233215	0.137983	0.103725
chr6	144468839	144468939	3021722	0	+	0.48	(0.45,0.485]	chr6	295268	56	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8	protein_coding	protein_coding	protein_coding	protein_coding	4	101	2	2.16768	2.78576	3.40384	0.0412837	0.027533	0.148252	0.112782
chr20	37404862	37404961	7473164	0	+	0.545455	(0.523,0.58]	chr20	778227	16	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	SRC	ENSG00000197122.13	ENST00000692112.1:ENST00000692423.1:ENST00000373578.7:ENST00000373567.6:ENST00000373558.2:ENST00000358208.9:ENST00000477066.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	220	2	2.58075	2.78499	2.98923	0.0183502	0.00790375	0.0924596	0.057762
chr14	30563540	30563640	5769310	0	+	0.48	(0.45,0.485]	chr14	565792	23	INTRON	INTRON	G2E3	ENSG00000092140.16	ENST00000206595.11:ENST00000438909.6:ENST00000544007.5:ENST00000550944.5:ENST00000552488.1:ENST00000648008.1:ENST00000553504.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	82	2	2.76444	2.784825	2.80521	0.0681544	0.0178454	0.164505	0.0945384
chr3	37887974	37888074	1443523	0	+	0.53	(0.523,0.58]	chr3	153956	253	INTRON	INTRON	CTDSPL	ENSG00000144677.15	ENST00000273179.10:ENST00000443503.6:ENST00000435525.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	60	2	2.70025	2.7848100000000002	2.86937	0.0763549	0.0324455	0.174544	0.130548
chr1	8602002	8602101	393570	0	-	0.333333	(0.33,0.36]	chr1	45045	113	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000400907.6:ENST00000656437.1:ENST00000659924.1:ENST00000480342.5:ENST00000514428.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	158	2	2.68474	2.7846349999999997	2.88453	0.0329759	0.0102912	0.122904	0.0678983
chr19	940922	941022	7185255	0	+	0.74	(0.58,1]	chr19	730741	78	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	179	2	2.39918	2.784595	3.17001	0.0280647	0.00272556	0.113739	0.028553
chr8	22387762	22387861	3770226	0	+	0.555556	(0.523,0.58]	chr8	362727	79	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	6	151	2	2.60317	2.784585	2.966	0.048595	0.00434455	0.145074	0.0390501
chr9	123404788	123404888	4396608	0	-	0.56	(0.523,0.58]	chr9	419589	9	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	2.53438	2.784475	3.03457	0.0957531	0.0231444	0.189038	0.109883
chr17	29116855	29116955	6876317	0	-	0.55	(0.523,0.58]	chr17	697937	4	SS3_PROX	SS3_PROX:INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000588791.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	168	2	2.00966	2.7844499999999996	3.55924	0.0429198	0.00940765	0.150679	0.0653252
chr11	110230702	110230799	5123791	0	-	0.309278	(0.29,0.33]	chr11	497283	14	UTR3	UTR3:EXON_MRNA:INTRON	RDX	ENSG00000137710.17	ENST00000645527.1:ENST00000530749.5:ENST00000528498.5:ENST00000645312.1:ENST00000528900.5:ENST00000530301.5:ENST00000647231.1:ENST00000646663.1:ENST00000645495.2:ENST00000544551.5:ENST00000527537.5:ENST00000532461.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	59	2	2.61502	2.78422	2.95342	0.083721	0.0280419	0.181508	0.121542
chr1	20774805	20774905	414128	0	-	0.51	(0.485,0.523]	chr1	48419	13	UTR5	UTR5:EXON_MRNA:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5:ENST00000424732.5:ENST00000417710.5	protein_coding	protein_coding	protein_coding	protein_coding	7	169	2	2.30215	2.7836600000000002	3.26517	0.0187548	0.0159747	0.0979964	0.0863567
chr6	158328667	158328767	3061808	0	+	0.5	(0.485,0.523]	chr6	297592	140	INTRON	INTRON	ENSG00000274023:TULP4	ENSG00000274023.1:ENSG00000130338.13	ENST00000619713.1:ENST00000367097.8:ENST00000367094.6:ENST00000616856.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	3	81	2	2.5366	2.7828049999999998	3.02901	0.0953348	0.00918957	0.189038	0.0635962
chr16	85594025	85594125	6519013	0	+	0.53	(0.523,0.58]	chr16	646396	373	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	3	81	2	2.12522	2.7826750000000002	3.44013	0.0984283	0.00938609	0.192982	0.064735
chr7	4697760	4697860	3309496	0	+	0.33	(0.29,0.33]	chr7	320808	145	INTRON	INTRON	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	3	80	2	2.45052	2.78261	3.1147	0.0398517	0.0341666	0.134436	0.133954
chr11	70574229	70574329	5060015	0	-	0.6	(0.58,1]	chr11	492663	709	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	84	2	2.18459	2.7820650000000002	3.37954	0.0341377	0.0207688	0.134338	0.098873
chr22	50729275	50729374	7755484	0	+	0.686869	(0.58,1]	chr22	812807	48	INTRON	INTRON	SHANK3	ENSG00000251322.11	ENST00000414786.7:ENST00000673971.2:ENST00000262795.7:ENST00000445220.7:ENST00000664402.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	72	2	2.27185	2.78179	3.29173	0.0433824	0.0243429	0.152119	0.106588
chr11	65434755	65434855	4871689	0	+	0.39	(0.36,0.39]	chr11	468177	121	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	30	951	2	2.18753	2.780705	3.37388	0.0139151	0.00519201	0.0824012	0.0474433
chr3	32864519	32864619	1439337	0	+	0.58	(0.523,0.58]	chr3	153401	452	INTRON	INTRON	TRIM71	ENSG00000206557.6	ENST00000383763.6	protein_coding	protein_coding	protein_coding	protein_coding	3	79	2	2.7389	2.780595	2.82229	0.072318	0.014802	0.168347	0.0847481
chr17	72663987	72664069	6964918	0	-	0.585366	(0.58,1]	chr17	710472	3	EXON_SMALL	EXON_SMALL:INTRON	SLC39A11:RN7SKP180	ENSG00000133195.12:ENSG00000200783.1	ENST00000255559.8:ENST00000542342.6:ENST00000579988.1:ENST00000582769.5:ENST00000363913.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding:processed_transcript	26	472	2	2.27222	2.779955	3.28769	0.00646731	0.0039998	0.0503748	0.0409634
chr15	77046142	77046241	6331965	0	-	0.333333	(0.33,0.36]	chr15	624408	49	UTR3	UTR3:EXON_MRNA	TSPAN3	ENSG00000140391.15	ENST00000267970.9:ENST00000346495.6:ENST00000424443.7:ENST00000560715.5:ENST00000561277.5:ENST00000559494.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	169	2	2.56747	2.77928	2.99109	0.0526939	0.00835445	0.14912	0.0599102
chr10	75469413	75469512	4520852	0	+	0.474747	(0.45,0.485]	chr10	432249	178	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.57593	2.77858	2.98123	0.093234	0.0270875	0.188571	0.119337
chr16	85435017	85435117	6517421	0	+	0.51	(0.485,0.523]	chr16	646391	757	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.60361	2.7785650000000004	2.95352	0.0541523	0.0528263	0.167824	0.14912
chr21	42845463	42845562	7675426	0	-	0.525253	(0.523,0.58]	chr21	802287	18	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	4	97	2	2.77655	2.778075	2.7796	0.0685533	0.00988091	0.165066	0.0664239
chr13	98277698	98277798	5635008	0	+	0.45	(0.419,0.45]	chr13	553480	325	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	5	125	2	1.97572	2.777475	3.57923	0.0516998	0.0243601	0.166375	0.106605
chr2	39395204	39395304	1128906	0	-	0.35	(0.33,0.36]	chr2	123687	155	INTRON	INTRON	MAP4K3	ENSG00000011566.15	ENST00000263881.8:ENST00000341681.9:ENST00000429397.5:ENST00000437968.1:ENST00000484274.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	62	2	2.56404	2.77693	2.98982	0.0954498	0.027642	0.189038	0.120359
chr19	15330935	15331035	7342360	0	-	0.51	(0.485,0.523]	chr19	760397	506	INTRON	INTRON	BRD4	ENSG00000141867.19	ENST00000679869.1:ENST00000360016.9:ENST00000594841.5:ENST00000597315.5:ENST00000601941.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	95	2	2.4435	2.77644	3.10938	0.0416572	0.0220947	0.136301	0.107801
chr7	75934409	75934509	3396799	0	+	0.37	(0.36,0.39]	chr7	328054	111	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000449920.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	170	2	2.27011	2.776115	3.28212	0.0276172	0.0184506	0.120359	0.0927607
chr13	40628846	40628946	5692954	0	-	0.43	(0.419,0.45]	chr13	558751	657	INTRON	INTRON	FOXO1	ENSG00000150907.10	ENST00000379561.6:ENST00000655267.1:ENST00000660760.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	72	2	2.52086	2.775625	3.03039	0.0683849	0.0550674	0.193274	0.153454
chr16	307797	307896	6529585	0	-	0.636364	(0.58,1]	chr16	648369	30	INTRON	INTRON	AXIN1	ENSG00000103126.15	ENST00000262320.8:ENST00000461023.5:ENST00000354866.7:ENST00000481769.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	54	2	2.63525	2.774855	2.91446	0.0464528	0.0459151	0.154743	0.143232
chr4	8218044	8218144	2014205	0	+	0.68	(0.58,1]	chr4	205552	4	SS3_PROX	SS3_PROX:INTRON	SH3TC1	ENSG00000125089.18	ENST00000508641.2:ENST00000245105.8:ENST00000506360.5:ENST00000502669.5:ENST00000515682.5:ENST00000457650.7:ENST00000684698.1:ENST00000684537.1:ENST00000682056.1:ENST00000682862.1:ENST00000507891.2:ENST00000512100.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	54	2	2.63525	2.774855	2.91446	0.0464528	0.0459151	0.154743	0.143232
chr17	82004344	82004443	6815340	0	+	0.646465	(0.58,1]	chr17	688641	1	EXON_MRNA	EXON_MRNA:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	17	378	2	1.68593	2.7747599999999997	3.86359	0.0740346	9.09944e-5	0.171168	0.00255001
chr22	21448808	21448906	7689850	0	+	0.653061	(0.58,1]	chr22	804733	22	UTR3	UTR3:EXON_MRNA	HIC2	ENSG00000169635.10	ENST00000407464.7:ENST00000407598.2:ENST00000443632.2	protein_coding	protein_coding	protein_coding	protein_coding	2	58	2	2.38295	2.774305	3.16566	0.0730701	0.0304114	0.199669	0.11845
chr2	159764325	159764425	937784	0	+	0.28	[0,0.29]	chr2	103592	3	SS3_PROX	SS3_PROX:INTRON	MARCHF7	ENSG00000136536.15	ENST00000539065.5:ENST00000259050.8:ENST00000409175.6:ENST00000409591.5:ENST00000420397.1:ENST00000478396.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	95	2	2.53067	2.773485	3.0163	0.0856331	0.00503138	0.181766	0.0430727
chr7	47393501	47393601	3587727	0	-	0.61	(0.58,1]	chr7	346036	235	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000469470.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	2.50987	2.773315	3.03676	0.0865901	0.0198789	0.182221	0.100864
chrX	65516048	65516144	8055034	0	-	0.4375	(0.419,0.45]	chrX	840752	7	INTRON	INTRON	LAS1L	ENSG00000001497.18	ENST00000677056.1:ENST00000677969.1:ENST00000374811.8:ENST00000374807.9:ENST00000677834.1:ENST00000484069.1:ENST00000374804.9:ENST00000677986.1:ENST00000677087.1:ENST00000679056.1:ENST00000679261.1:ENST00000678074.1:ENST00000678705.1:ENST00000679277.1:ENST00000677154.1:ENST00000678547.1:ENST00000678956.1:ENST00000679116.1:ENST00000678848.1:ENST00000678173.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	108	2	2.692	2.772475	2.85295	0.0703179	0.0148836	0.168159	0.0847741
chr21	44868119	44868217	7678523	0	-	0.397959	(0.39,0.419]	chr21	802773	21	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	285	2	2.33678	2.77178	3.20678	0.0461697	0.0108049	0.155334	0.0707085
chr16	81540482	81540582	6508698	0	+	0.56	(0.523,0.58]	chr16	645911	446	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	6	158	2	2.39069	2.7717400000000003	3.15279	0.0420356	0.00667201	0.137337	0.0517092
chr2	222865674	222865774	1037748	0	+	0.44	(0.419,0.45]	chr2	113180	1	SS5_PROX	SS5_PROX:INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	168	2	2.57246	2.771495	2.97053	0.0328064	0.0146368	0.122593	0.0839061
chr19	34383797	34383897	7243188	0	+	0.59	(0.58,1]	chr19	741718	18	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	76	2	2.02776	2.771365	3.51497	0.0700362	0.0161632	0.195209	0.0872435
chr20	45078537	45078636	7486289	0	+	0.393939	(0.39,0.419]	chr20	780020	35	UTR3	UTR3:EXON_MRNA	STK4	ENSG00000101109.12	ENST00000499879.6:ENST00000372806.8	protein_coding	protein_coding	protein_coding	protein_coding	8	156	2	1.99497	2.7705450000000003	3.54612	0.0333598	0.0241367	0.133139	0.106588
chr6	16619915	16620015	3103038	0	-	0.46	(0.45,0.485]	chr6	300871	34	INTRON	INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6:ENST00000495178.1:ENST00000646259.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	128	2	2.44722	2.769895	3.09257	0.0447818	0.0139505	0.140478	0.0825438
chr6	158573523	158573623	3064031	0	+	0.52	(0.485,0.523]	chr6	297691	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.74113	2.769875	2.79862	0.0719691	0.0375966	0.168159	0.139924
chr8	22393232	22393332	3770282	0	+	0.62	(0.58,1]	chr8	362729	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1:ENST00000520832.1	protein_coding	protein_coding	protein_coding	protein_coding	6	104	2	2.10429	2.7697700000000003	3.43525	0.0252834	0.0187495	0.115084	0.0936297
chr19	1415639	1415739	7187503	0	+	0.57	(0.523,0.58]	chr19	731286	52	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	120	2	2.13918	2.76972	3.40026	0.0270236	0.0262178	0.119337	0.110264
chr7	47354323	47354422	3587334	0	-	0.59596	(0.58,1]	chr7	346030	76	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	5	116	2	2.50095	2.769355	3.03776	0.0334226	0.00720487	0.12421	0.0543254
chr17	77483629	77483729	6805218	0	+	0.67	(0.58,1]	chr17	686820	14	EXON_MRNA	EXON_MRNA:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	51	2	2.56085	2.7689899999999996	2.97713	0.0803939	0.0226795	0.177452	0.108193
chr13	45499876	45499975	5583522	0	+	0.636364	(0.58,1]	chr13	550643	32	INTRON	INTRON	COG3	ENSG00000136152.15	ENST00000349995.10:ENST00000465942.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	98	2	1.78051	2.76892	3.75733	0.0933928	0.0033279	0.188571	0.0325742
chr9	133735293	133735391	4427936	0	-	0.632653	(0.58,1]	chr9	423136	7	INTRON	INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000427237.6:ENST00000298628.6	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.66286	2.768785	2.87471	0.0495478	0.0183006	0.146562	0.0958973
chr6	3436498	3436597	3087860	0	-	0.515152	(0.485,0.523]	chr6	299797	38	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	59	2	2.62192	2.768645	2.91537	0.0849566	0.0298565	0.181766	0.126732
chr16	81551779	81551879	6508811	0	+	0.59	(0.58,1]	chr16	645911	559	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	2	56	2	2.47204	2.7676749999999997	3.06331	0.0623526	0.036259	0.181127	0.127941
chr3	139584305	139584405	1929277	0	-	0.6	(0.58,1]	chr3	196152	7	INTRON	INTRON	NMNAT3	ENSG00000163864.17	ENST00000506254.5:ENST00000339837.9:ENST00000643695.2:ENST00000413939.6:ENST00000646611.1:ENST00000642987.1:ENST00000645290.1:ENST00000296202.11:ENST00000511444.5:ENST00000512391.5:ENST00000645507.1:ENST00000647257.1:ENST00000509291.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	68	2	2.6194	2.7669300000000003	2.91446	0.0464528	0.0202577	0.143232	0.102015
chr16	16184758	16184858	6556719	0	-	0.62	(0.58,1]	chr16	653133	4	SS5_PROX	SS5_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	71	2	2.27185	2.76654	3.26123	0.0433824	0.0257049	0.152119	0.109543
chr17	17828080	17828179	6865804	0	-	0.666667	(0.58,1]	chr17	695923	41	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	5	115	2	2.46131	2.76586	3.07041	0.0359	0.00661304	0.127853	0.0512951
chrX	1398024	1398124	7830141	0	+	0.62	(0.58,1]	chrX	822055	4	INTRON	INTRON	LINC00106	ENSG00000236871.7	ENST00000434938.7:ENST00000430235.7	lncRNA	lncRNA	lncRNA	lncRNA	2	52	2	2.74846	2.76516	2.78186	0.0605281	0.0342923	0.158506	0.13449
chr20	8455647	8455746	7429824	0	+	0.434343	(0.419,0.45]	chr20	773698	836	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	171	2	2.15648	2.764875	3.37327	0.0711382	0.00497103	0.168159	0.0426517
chr3	38378648	38378745	1445830	0	+	0.546392	(0.523,0.58]	chr3	154249	13	INTRON	INTRON	XYLB	ENSG00000093217.11	ENST00000207870.8:ENST00000650590.1:ENST00000424034.5:ENST00000649234.1:ENST00000472721.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	80	2	2.39285	2.764625	3.1364	0.0400336	0.0376513	0.140049	0.134064
chr8	22560444	22560541	3771897	0	+	0.505155	(0.485,0.523]	chr8	362926	19	INTRON	INTRON	SORBS3	ENSG00000120896.14	ENST00000240123.12:ENST00000517500.5:ENST00000517535.5:ENST00000523402.5:ENST00000520563.3:ENST00000524057.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	155	2	2.30893	2.76397	3.21901	0.0479325	0.00573866	0.144601	0.0467925
chr10	102645403	102645503	4576477	0	+	0.58	(0.523,0.58]	chr10	437275	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	94	2	2.36236	2.763715	3.16507	0.0382777	0.0261999	0.131324	0.117385
chr16	85237965	85238065	6515448	0	+	0.51	(0.485,0.523]	chr16	646377	102	INTRON	INTRON	GSE1:ENSG00000287787	ENSG00000131149.19:ENSG00000287787.1	ENST00000637419.1:ENST00000653746.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	4	111	2	2.45232	2.7634	3.07448	0.0455465	0.0214987	0.142336	0.10537
chr8	631036	631136	3932030	0	-	0.55	(0.523,0.58]	chr8	376005	34	INTRON	INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000519909.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	80	2	2.12522	2.76276	3.4003	0.0984283	0.0103016	0.192982	0.0678983
chr4	772981	773081	2177976	0	-	0.61	(0.58,1]	chr4	220526	50	INTRON	INTRON	ENSG00000249592	ENSG00000249592.7	ENST00000660016.1:ENST00000665579.1:ENST00000503571.5:ENST00000652800.1:ENST00000507446.1	lncRNA	lncRNA	lncRNA	lncRNA	2	51	2	2.61009	2.76251	2.91493	0.0747426	0.0259506	0.172361	0.116361
chr20	8274801	8274901	7428010	0	+	0.47	(0.45,0.485]	chr20	773686	180	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	60	2	2.49062	2.761475	3.03233	0.104221	0.0244076	0.19835	0.113311
chr21	42846354	42846453	7675435	0	-	0.606061	(0.58,1]	chr21	802287	27	INTRON	INTRON	WDR4	ENSG00000160193.12	ENST00000330317.6	protein_coding	protein_coding	protein_coding	protein_coding	5	94	2	2.45956	2.761435	3.06331	0.036259	0.0130665	0.127941	0.078517
chr7	29988643	29988743	3564846	0	-	0.57	(0.523,0.58]	chr7	344002	189	INTRON	INTRON	SCRN1	ENSG00000136193.17	ENST00000426154.5:ENST00000242059.10:ENST00000425819.6:ENST00000434476.6:ENST00000421434.5:ENST00000494620.1:ENST00000409570.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	78	2	2.70025	2.76127	2.82229	0.0763549	0.014802	0.174544	0.0847481
chr11	65427366	65427466	4871615	0	+	0.58	(0.523,0.58]	chr11	468177	47	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	63	1750	2	2.01478	2.7610900000000003	3.5074	0.0139924	0.00253396	0.0827745	0.0317673
chr6	158020886	158020986	3059701	0	+	0.36	(0.33,0.36]	chr6	297373	27	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2	protein_coding	protein_coding	protein_coding	protein_coding	5	137	2	1.99608	2.76037	3.52466	0.0952813	0.00302288	0.189038	0.0305643
chr4	10101121	10101220	2195661	0	-	0.545455	(0.523,0.58]	chr4	222412	16	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	81	2	2.24595	2.7598599999999998	3.27377	0.0830542	0.0137592	0.180329	0.0814923
chr2	235510535	235510635	1062701	0	+	0.41	(0.39,0.419]	chr2	115651	153	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	90	2	2.33564	2.759665	3.18369	0.0799089	0.0193131	0.177053	0.0994526
chr9	123526192	123526291	4397838	0	-	0.50505	(0.485,0.523]	chr9	419652	402	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	80	2	2.38071	2.759665	3.13862	0.0398026	0.0388914	0.142578	0.133884
chr6	3349165	3349264	3086981	0	-	0.616162	(0.58,1]	chr6	299774	248	INTRON	INTRON	SLC22A23	ENSG00000137266.15	ENST00000436008.6:ENST00000406686.8:ENST00000380302.8:ENST00000497691.5:ENST00000490273.5:ENST00000485307.5:ENST00000467177.5:ENST00000496753.1:ENST00000380298.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	69	2	2.07697	2.75927	3.44157	0.0924023	0.00760198	0.188571	0.0561937
chr2	75547587	75547687	1194655	0	-	0.4	(0.39,0.419]	chr2	129875	210	INTRON	INTRON	EVA1A	ENSG00000115363.14	ENST00000485891.1:ENST00000490746.5:ENST00000233712.5:ENST00000393913.8:ENST00000410113.5:ENST00000410071.5:ENST00000432649.5:ENST00000486696.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	86	2	2.62127	2.7589449999999998	2.89662	0.0923527	0.0145147	0.188571	0.0836197
chr6	41585717	41585817	2912908	0	+	0.57	(0.523,0.58]	chr6	285785	2	SS5_PROX	SS5_PROX:INTRON	FOXP4	ENSG00000137166.17	ENST00000307972.10:ENST00000373063.7:ENST00000409208.5:ENST00000373057.7	protein_coding	protein_coding	protein_coding	protein_coding	4	94	2	2.29636	2.75855	3.22074	0.0350559	0.0302576	0.12704	0.126768
chr10	79253221	79253321	4533894	0	+	0.43	(0.419,0.45]	chr10	432461	91	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10:ENST00000472035.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	96	2	2.49654	2.758465	3.02039	0.0662255	0.0276403	0.162385	0.120359
chr10	131919984	131920084	4616216	0	+	0.55	(0.523,0.58]	chr10	441069	70	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	58	2	2.53438	2.75798	2.98158	0.0957531	0.0258432	0.189038	0.116361
chr17	17824007	17824107	6865763	0	-	0.51	(0.485,0.523]	chr17	695922	4	SS3_PROX	SS3_PROX:INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.7365	2.757635	2.77877	0.0682166	0.0423471	0.164526	0.149195
chr12	56596764	56596862	5437620	0	-	0.316327	(0.29,0.33]	chr12	534676	13	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	3	78	2	2.65705	2.757385	2.85772	0.0789527	0.0140617	0.175712	0.08317
chr20	62888288	62888386	7585192	0	-	0.571429	(0.523,0.58]	chr20	792848	12	UTR3	UTR3:EXON_MRNA:INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5	protein_coding	protein_coding	protein_coding	protein_coding	11	216	2	2.18082	2.7567250000000003	3.33263	0.0160602	0.0142129	0.0896852	0.0816928
chr20	8213631	8213731	7427396	0	+	0.4	(0.39,0.419]	chr20	773674	629	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	67	2	2.61462	2.756285	2.89795	0.0636416	0.0572875	0.174149	0.161669
chrX	109687033	109687133	8091001	0	-	0.43	(0.419,0.45]	chrX	843698	12	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000505855.1:ENST00000508092.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	107	2	2.18148	2.7561150000000003	3.33075	0.043587	0.0356124	0.152811	0.127588
chr4	151282044	151282144	2352104	0	-	0.51	(0.485,0.523]	chr4	235111	159	INTRON	INTRON	SH3D19	ENSG00000109686.19	ENST00000604030.7	protein_coding	protein_coding	protein_coding	protein_coding	3	78	2	2.59183	2.756025	2.92022	0.0555127	0.0250389	0.154188	0.114418
chr5	146150586	146150683	2784250	0	-	0.463918	(0.45,0.485]	chr5	272991	5	INTRON	INTRON	LARS1	ENSG00000133706.19	ENST00000674174.1:ENST00000674170.1:ENST00000674479.1:ENST00000674309.1:ENST00000674218.1:ENST00000674467.1:ENST00000674290.1:ENST00000674447.1:ENST00000674270.1:ENST00000674383.1:ENST00000674191.1:ENST00000674158.1:ENST00000394434.7:ENST00000674398.1:ENST00000674277.1:ENST00000274562.13:ENST00000510191.5:ENST00000674310.1:ENST00000512412.2:ENST00000508667.5:ENST00000507095.1:ENST00000674417.1:ENST00000674450.1:ENST00000674412.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	83	2	2.3351	2.756005	3.17691	0.0438295	0.0393744	0.153511	0.132578
chr10	87116820	87116920	4540019	0	+	0.47	(0.45,0.485]	chr10	432998	14	INTRON	INTRON	SHLD2	ENSG00000122376.12	ENST00000437629.6:ENST00000298784.5:ENST00000298786.5	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.69512	2.7556000000000003	2.81608	0.0794176	0.0375071	0.176565	0.139823
chr10	3778947	3779045	4621639	0	-	0.489796	(0.485,0.523]	chr10	441655	31	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	KLF6	ENSG00000067082.15	ENST00000497571.6:ENST00000461124.1:ENST00000542957.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	121	2	1.8432	2.754705	3.66621	0.0516084	0.0166798	0.166145	0.0884836
chr1	44242180	44242280	459594	0	-	0.62	(0.58,1]	chr1	55306	1	SS3_PROX	SS3_PROX:INTRON	ERI3	ENSG00000117419.16	ENST00000372257.7:ENST00000372259.9:ENST00000456170.6:ENST00000649995.1:ENST00000489710.1:ENST00000479101.1:ENST00000462341.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	68	2	2.61009	2.7546749999999998	2.89926	0.0747426	0.0102831	0.172361	0.0678667
chr3	9820258	9820353	1404226	0	+	0.610526	(0.58,1]	chr3	150520	15	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	ARPC4-TTLL3:TTLL3	ENSG00000250151.9:ENSG00000214021.17	ENST00000397256.5:ENST00000427220.5:ENST00000426895.10:ENST00000431204.5:ENST00000685419.1:ENST00000430390.5:ENST00000483051.5:ENST00000310252.11:ENST00000496526.5:ENST00000496246.5:ENST00000452823.5:ENST00000474948.5:ENST00000443148.5:ENST00000383827.5:ENST00000473661.5:ENST00000455274.5:ENST00000430793.1:ENST00000438141.5:ENST00000602338.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	68	2	2.48056	2.754035	3.02751	0.0385189	0.0277636	0.131324	0.12074
chr21	46548310	46548406	7634394	0	+	0.625	(0.58,1]	chr21	798458	9	INTRON	INTRON	DIP2A	ENSG00000160305.18	ENST00000417564.3:ENST00000651436.1:ENST00000400274.5:ENST00000457905.7	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.6577	2.7538150000000003	2.84993	0.0695799	0.0297842	0.167028	0.126591
chr2	158557807	158557906	935965	0	+	0.424242	(0.419,0.45]	chr2	103384	87	INTRON	INTRON	PKP4	ENSG00000144283.23	ENST00000389759.8:ENST00000426248.7:ENST00000389757.7:ENST00000457109.5:ENST00000452162.5:ENST00000411900.5:ENST00000421462.5:ENST00000462335.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	88	2	2.50478	2.753535	3.00229	0.0572793	0.0340831	0.154343	0.134158
chr15	98786800	98786900	6194714	0	+	0.51	(0.485,0.523]	chr15	609667	19	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1:ENST00000557938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	58	2	2.5366	2.75349	2.97038	0.0953348	0.0267011	0.189038	0.118343
chr8	127174864	127174963	4066736	0	-	0.50505	(0.485,0.523]	chr8	387403	1	INTRON	INTRON	CASC19	ENSG00000254166.3	ENST00000642100.1:ENST00000641912.1:ENST00000641421.1:ENST00000641701.1:ENST00000641991.1:ENST00000641588.1:ENST00000642088.1:ENST00000641425.1:ENST00000641706.1:ENST00000641496.1:ENST00000641013.1:ENST00000641262.1:ENST00000641174.1:ENST00000642102.1:ENST00000641615.1:ENST00000641487.1:ENST00000641321.1:ENST00000641719.1:ENST00000642010.1:ENST00000641578.1:ENST00000641510.1:ENST00000641604.1:ENST00000641056.1:ENST00000641642.1:ENST00000641362.1:ENST00000641365.1:ENST00000642077.1:ENST00000641179.1:ENST00000642126.1:ENST00000641411.1:ENST00000641357.1:ENST00000641746.2:ENST00000641073.1:ENST00000641298.1:ENST00000641001.1:ENST00000641674.2:ENST00000641828.1:ENST00000641029.1:ENST00000641547.1:ENST00000642134.1:ENST00000641696.1:ENST00000641480.1:ENST00000641187.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	79	2	2.5366	2.753195	2.96979	0.0953348	0.0105977	0.189038	0.069518
chr15	60495659	60495759	6284463	0	-	0.44	(0.419,0.45]	chr15	619448	75	UTR3	UTR3:EXON_MRNA	RORA	ENSG00000069667.16	ENST00000335670.11	protein_coding	protein_coding	protein_coding	protein_coding	2	66	2	2.68635	2.7528550000000003	2.81936	0.0876314	0.0405181	0.183437	0.145945
chrX	1399058	1399127	7830152	0	+	0.666667	(0.58,1]	chrX	822060	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	LINC00106	ENSG00000236871.7	ENST00000430235.7	lncRNA	lncRNA	lncRNA	lncRNA	2	52	2	2.71042	2.7511	2.79178	0.0565563	0.0396128	0.154343	0.143388
chrX	133825806	133825906	8114425	0	-	0.42	(0.419,0.45]	chrX	845523	713	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	144	2	2.58038	2.75101	2.92164	0.0587735	0.00876484	0.155837	0.0614673
chr22	50393197	50393294	7754166	0	+	0.546392	(0.523,0.58]	chr22	812494	8	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9	protein_coding	protein_coding	protein_coding	protein_coding	7	178	2	2.74462	2.75049	2.75636	0.0281034	0.00751992	0.113885	0.0558181
chr11	65430262	65430362	4871644	0	+	0.59	(0.58,1]	chr11	468177	76	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	78	1945	2	2.45024	2.74973	3.04922	0.00331201	0.0031707	0.0368376	0.0315616
chr19	40273943	40274042	7379714	0	-	0.565657	(0.523,0.58]	chr19	765692	33	INTRON	INTRON	AKT2	ENSG00000105221.18	ENST00000392038.7:ENST00000424901.5:ENST00000391844.8:ENST00000584288.5:ENST00000579047.5:ENST00000537834.5:ENST00000487537.3:ENST00000486368.6:ENST00000596634.5:ENST00000452077.5:ENST00000578123.5:ENST00000672890.1:ENST00000423127.5:ENST00000358335.9:ENST00000456441.5:ENST00000583859.5:ENST00000416994.6:ENST00000498350.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	61	2	2.61478	2.7493499999999997	2.88392	0.0586821	0.052707	0.167062	0.155604
chr20	62934595	62934695	7585682	0	-	0.48	(0.45,0.485]	chr20	792933	54	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000370371.8	protein_coding	protein_coding	protein_coding	protein_coding	3	80	2	2.62266	2.748425	2.87419	0.061784	0.0243222	0.158872	0.113231
chr14	54613296	54613396	5819906	0	+	0.55	(0.523,0.58]	chr14	569049	448	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	104	2	2.26663	2.747815	3.229	0.061194900000000003	0.0152072	0.158506	0.0861813
chr1	12588226	12588325	402485	0	-	0.50505	(0.485,0.523]	chr1	46222	72	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	58	2	2.57989	2.74763	2.91537	0.0899526	0.0298565	0.185791	0.126732
chr11	118630282	118630382	4948502	0	+	0.56	(0.523,0.58]	chr11	477793	2	SS5_PROX	SS5_PROX:INTRON	PHLDB1	ENSG00000019144.20	ENST00000361417.6:ENST00000530994.5:ENST00000600882.6:ENST00000528594.5:ENST00000621027.4:ENST00000356063.9:ENST00000532517.5:ENST00000614369.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	93	2	2.32973	2.7474	3.16507	0.0382777	0.0281429	0.131324	0.121961
chr20	37517914	37518013	7559949	0	-	0.363636	(0.36,0.39]	chr20	789583	6	UTR3	UTR3:EXON_MRNA:INTRON	BLCAP	ENSG00000166619.15	ENST00000467603.1:ENST00000373537.7:ENST00000397137.5:ENST00000414542.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	194	2	2.39756	2.7472149999999997	3.09687	0.0555952	0.00390282	0.154188	0.0364654
chr13	33262760	33262860	5685225	0	-	0.49	(0.485,0.523]	chr13	558196	569	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	177	2	2.4783	2.747095	3.01589	0.0246577	0.0104383	0.107297	0.0685597
chr6	166334384	166334484	3301417	0	-	0.48	(0.45,0.485]	chr6	319660	26	INTRON	INTRON	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000478705.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	83	2	2.28891	2.746435	3.20396	0.0479351	0.0377633	0.159092	0.131324
chr11	70812767	70812867	5062411	0	-	0.45	(0.419,0.45]	chr11	492713	52	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	87	2	2.57738	2.745965	2.91455	0.06467	0.0294759	0.162218	0.125644
chr6	157384465	157384565	3053874	0	+	0.43	(0.419,0.45]	chr6	297167	18	INTRON	INTRON	ZDHHC14	ENSG00000175048.17	ENST00000414563.6:ENST00000359775.10	protein_coding	protein_coding	protein_coding	protein_coding	3	113	2	2.52086	2.745695	2.97053	0.0683849	0.0328064	0.193274	0.122593
chr7	138000607	138000706	3720709	0	-	0.555556	(0.523,0.58]	chr7	357311	4	INTRON	INTRON	CREB3L2	ENSG00000182158.16	ENST00000330387.11:ENST00000456390.5:ENST00000452463.5:ENST00000468127.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	85	2	2.50981	2.745695	2.98158	0.0561618	0.0258432	0.154188	0.116361
chr6	157310685	157310785	3298398	0	-	0.57	(0.523,0.58]	chr6	319197	173	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	18	417	2	2.63602	2.7448949999999996	2.85377	0.0148484	0.00406213	0.0832936	0.037239
chr19	35002321	35002421	7244881	0	+	0.47	(0.45,0.485]	chr19	742065	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	146	2	2.20266	2.74431	3.28596	0.0384371	0.0165439	0.141711	0.0882444
chr11	65425668	65425768	4871598	0	+	0.34	(0.33,0.36]	chr11	468177	30	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000693290.1:ENST00000616315.2	lncRNA	lncRNA	lncRNA	lncRNA	39	1020	2	2.52769	2.7437300000000002	2.95977	0.00936862	0.00492301	0.0652356	0.0423306
chr10	79162133	79162233	4532978	0	+	0.67	(0.58,1]	chr10	432436	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.50987	2.7435	2.97713	0.0865901	0.0226795	0.182221	0.108193
chr19	947107	947207	7185317	0	+	0.64	(0.58,1]	chr19	730741	140	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	236	2	2.15098	2.7433300000000003	3.33568	0.0192992	0.00495193	0.0994526	0.0461242
chr11	57303773	57303871	5038254	0	-	0.612245	(0.58,1]	chr11	488042	4	INTRON	INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	51	2	2.7038	2.74283	2.78186	0.0648563	0.0342923	0.162218	0.13449
chr1	12596707	12596806	402571	0	-	0.525253	(0.523,0.58]	chr1	46226	5	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	81	2	2.30272	2.742755	3.18279	0.076523	0.0168396	0.174882	0.0919482
chr2	238448292	238448391	1074168	0	+	0.565657	(0.523,0.58]	chr2	116452	19	UTR3	UTR3:EXON_MRNA:INTRON	ASB1	ENSG00000065802.12	ENST00000264607.9:ENST00000481566.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	79	2	2.12522	2.74228	3.35934	0.0984283	0.0113252	0.192982	0.071894
chr10	79229971	79230071	4533661	0	+	0.58	(0.523,0.58]	chr10	432457	133	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	63	2	2.46839	2.7420299999999997	3.01567	0.0683019	0.0482042	0.193274	0.144601
chr2	177238965	177239065	1324707	0	-	0.38	(0.36,0.39]	chr2	141416	43	INTRON	INTRON	NFE2L2	ENSG00000116044.16	ENST00000397063.8:ENST00000464747.5:ENST00000397062.8:ENST00000446151.6:ENST00000449627.1:ENST00000448782.5:ENST00000430047.1:ENST00000586532.5:ENST00000421929.5:ENST00000423513.5:ENST00000588123.1:ENST00000477534.1:ENST00000462023.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	102	2	2.60858	2.7412	2.87382	0.0653866	0.0172967	0.162385	0.0925693
chr2	222870256	222870355	1037794	0	+	0.373737	(0.36,0.39]	chr2	113181	43	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	87	2	2.21336	2.741025	3.26869	0.0939252	0.016118	0.188571	0.0897679
chr16	50625310	50625397	6452183	0	+	0.655172	(0.58,1]	chr16	639920	2	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000566396.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	110	2	2.01789	2.7407	3.46351	0.0762182	0.0022345	0.174484	0.024843
chr17	65556709	65556808	6950829	0	-	0.545455	(0.523,0.58]	chr17	709222	67	INTRON	INTRON	AXIN2	ENSG00000168646.14	ENST00000307078.10:ENST00000618960.4:ENST00000375702.5	protein_coding	protein_coding	protein_coding	protein_coding	5	128	2	2.35735	2.7396849999999997	3.12202	0.0706395	0.00411139	0.168159	0.0374453
chr5	78834366	78834466	2705172	0	-	0.49	(0.485,0.523]	chr5	266711	179	INTRON	INTRON	ARSB	ENSG00000113273.17	ENST00000264914.10:ENST00000396151.7	protein_coding	protein_coding	protein_coding	protein_coding	3	77	2	2.70247	2.73922	2.77597	0.0759932	0.0166536	0.174411	0.0917029
chr6	158039936	158040035	3059897	0	+	0.626263	(0.58,1]	chr6	297390	59	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	109	2	2.55909	2.7386749999999997	2.91826	0.0425829	0.0055314	0.13762	0.0456275
chr20	31708757	31708857	7542891	0	-	0.53	(0.523,0.58]	chr20	787266	238	INTRON	INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	106	2	2.10134	2.73864	3.37594	0.0353452	0.0272868	0.137983	0.112327
chr19	2206628	2206728	7188925	0	+	0.49	(0.485,0.523]	chr19	731583	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	DOT1L	ENSG00000104885.19	ENST00000398665.8:ENST00000686010.1	protein_coding	protein_coding	protein_coding	protein_coding	3	81	2	2.30509	2.738335	3.17158	0.0761321	0.017456	0.174484	0.0928044
chr9	14790490	14790587	4279607	0	-	0.360825	(0.36,0.39]	chr9	408901	10	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7:ENST00000466679.1:ENST00000497634.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	101	2	2.50685	2.73705	2.96725	0.0573348	0.0216448	0.154343	0.105793
chr7	47354522	47354621	3587336	0	-	0.575758	(0.523,0.58]	chr7	346030	78	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	7	177	2	2.3492	2.7356100000000003	3.12202	0.0449974	0.00411139	0.141054	0.0374453
chr14	68945966	68946066	5999813	0	-	0.55	(0.523,0.58]	chr14	588755	81	INTRON	INTRON	ACTN1	ENSG00000072110.16	ENST00000394419.9:ENST00000684638.1:ENST00000683780.1:ENST00000683198.1:ENST00000684639.1:ENST00000682378.1:ENST00000684598.1:ENST00000684146.1:ENST00000682130.1:ENST00000683267.1:ENST00000683069.1:ENST00000682381.1:ENST00000682298.1:ENST00000684340.1:ENST00000682331.1:ENST00000682291.1:ENST00000683225.1:ENST00000193403.10:ENST00000684713.1:ENST00000438964.6:ENST00000679147.1:ENST00000376839.7:ENST00000682559.1:ENST00000538545.6:ENST00000683342.1:ENST00000555616.5:ENST00000556433.5:ENST00000554508.6:ENST00000683261.1:ENST00000553370.5:ENST00000682602.1:ENST00000553779.5:ENST00000556571.1:ENST00000553659.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	58	2	2.66054	2.735175	2.80981	0.0806884	0.0364868	0.177452	0.139793
chr14	53953920	53954020	5984236	0	-	0.58	(0.523,0.58]	chr14	586814	1	SS5_PROX	SS5_PROX:INTRON	BMP4	ENSG00000125378.16	ENST00000245451.9:ENST00000559087.5:ENST00000417573.5:ENST00000559642.1	protein_coding	protein_coding	protein_coding	protein_coding	3	82	2	2.3839	2.734795	3.08569	0.0679164	0.020773	0.164413	0.102713
chr10	100999376	100999475	4570115	0	+	0.69697	(0.58,1]	chr10	436340	4	SS5_PROX	SS5_PROX:INTRON	LZTS2	ENSG00000107816.17	ENST00000426584.5:ENST00000370223.7:ENST00000489526.1:ENST00000429732.5:ENST00000481129.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	52	2	2.63525	2.734545	2.83384	0.0529065	0.0459151	0.154743	0.14912
chr14	19097001	19097100	5754310	0	+	0.626263	(0.58,1]	chr14	564239	32	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000619938.1:ENST00000644980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	22	455	2	2.37673	2.733745	3.09076	0.00571592	0.00514033	0.0471181	0.0467736
chr20	33009853	33009948	7457387	0	+	0.578947	(0.523,0.58]	chr20	776365	8	INTRON	INTRON	BPIFB2	ENSG00000078898.7	ENST00000170150.4	protein_coding	protein_coding	protein_coding	protein_coding	8	140	2	1.57863	2.7327500000000002	3.88687	0.0712241	0.0113547	0.198194	0.0723462
chr8	127849241	127849341	3918335	0	+	0.47	(0.45,0.485]	chr8	374180	26	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2:ENST00000655594.1	lncRNA	lncRNA	lncRNA	lncRNA	5	138	2	2.10977	2.732145	3.35452	0.103365	0.00243221	0.197541	0.0262739
chr11	65429163	65429263	4871633	0	+	0.37	(0.36,0.39]	chr11	468177	65	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	48	1344	2	2.65615	2.7321299999999997	2.80811	0.0127865	0.00371798	0.0769397	0.0350502
chr15	98787799	98787899	6194724	0	+	0.47	(0.45,0.485]	chr15	609667	29	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1:ENST00000557938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	97	2	2.13182	2.731955	3.33209	0.0443822	0.0308842	0.153511	0.119556
chr16	81455223	81455323	6507843	0	+	0.5	(0.485,0.523]	chr16	645906	93	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	3	81	2	2.1863	2.73144	3.27658	0.0567965	0.0319818	0.172995	0.121593
chr6	131820337	131820437	3008143	0	+	0.59	(0.58,1]	chr6	294168	117	INTRON	INTRON	ENPP1	ENSG00000197594.14	ENST00000486853.1:ENST00000647893.1:ENST00000513998.5:ENST00000650507.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	133	2	2.59552	2.73144	2.86736	0.028107	0.0063518	0.113895	0.0501889
chr2	63027341	63027441	817200	0	+	0.44	(0.419,0.45]	chr2	92205	302	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000496857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	66	2	2.7072600000000002	2.7312900000000004	2.75532	0.0800906	0.0496323	0.177372	0.160725
chr7	47346756	47346856	3587258	0	-	0.5	(0.485,0.523]	chr7	346029	4	SS3_PROX	SS3_PROX:INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.49197	2.731175	2.97038	0.10114	0.0267011	0.196131	0.118343
chr3	48423136	48423225	1766661	0	-	0.52809	(0.523,0.58]	chr3	182270	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000456774.5:ENST00000449094.5:ENST00000466353.1:ENST00000473683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	61	2	2.54344	2.73072	2.918	0.0599121	0.0558053	0.177269	0.154188
chr11	70658828	70658927	5060863	0	-	0.585859	(0.58,1]	chr11	492672	40	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	67	2	2.56085	2.730055	2.89926	0.0803939	0.0102831	0.177452	0.0678667
chr1	17592265	17592364	54102	0	+	0.555556	(0.523,0.58]	chr1	5465	34	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.68276	2.729655	2.77655	0.0685533	0.0464998	0.165066	0.156036
chr6	129626152	129626252	3259073	0	-	0.28	[0,0.29]	chr6	315400	69	INTRON	INTRON	ARHGAP18	ENSG00000146376.11	ENST00000368149.3	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.42686	2.72893	3.031	0.0991518	0.0223108	0.194208	0.108193
chr20	21235214	21235313	7448867	0	+	0.474747	(0.45,0.485]	chr20	775009	20	INTRON	INTRON	KIZ	ENSG00000088970.16	ENST00000619574.4:ENST00000620891.4:ENST00000611685.4:ENST00000616848.4:ENST00000619189.5:ENST00000616679.4:ENST00000619179.4:ENST00000621366.1:ENST00000451772.5:ENST00000419359.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	138	2	2.53372	2.728895	2.92407	0.0419851	0.0124115	0.137183	0.0765738
chr13	113047049	113047146	5656105	0	+	0.556701	(0.523,0.58]	chr13	555179	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	MCF2L	ENSG00000126217.21	ENST00000375608.7:ENST00000397030.5:ENST00000535094.7:ENST00000421756.5:ENST00000409954.6:ENST00000375604.6:ENST00000375597.8:ENST00000473345.5:ENST00000480321.1:ENST00000494043.1:ENST00000423251.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	107	2	2.66944	2.72878	2.78812	0.0437689	0.0160129	0.139708	0.0894586
chrX	129449442	129449542	8099454	0	-	0.33	(0.29,0.33]	chrX	844596	6	INTRON	INTRON	SMARCA1	ENSG00000102038.16	ENST00000617310.4:ENST00000371122.8:ENST00000371121.5:ENST00000371123.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	57	2	2.61502	2.7281199999999997	2.84122	0.083721	0.0350501	0.181508	0.137151
chr5	133106065	133106161	2536445	0	+	0.21875	[0,0.29]	chr5	251522	18	UTR3	UTR3:EXON_MRNA	HSPA4	ENSG00000170606.16	ENST00000304858.7	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.4797	2.72783	2.97596	0.0920821	0.0250673	0.188571	0.114418
chr6	155280258	155280358	3297827	0	-	0.65	(0.58,1]	chr6	319148	189	INTRON	INTRON	TFB1M	ENSG00000029639.11	ENST00000367166.5:ENST00000468889.5:ENST00000470239.1:ENST00000495806.1:ENST00000489874.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	90	2	2.38507	2.72774	3.07041	0.057029	0.00661304	0.154343	0.0512951
chr19	56839687	56839785	7410718	0	-	0.571429	(0.523,0.58]	chr19	771674	20	INTRON	INTRON	ZIM2:PEG3	ENSG00000269699.7:ENSG00000198300.14	ENST00000593711.6:ENST00000689654.1:ENST00000629319.3:ENST00000599935.5:ENST00000693159.1:ENST00000650111.1:ENST00000648694.1:ENST00000326441.15:ENST00000649233.1:ENST00000649680.1:ENST00000649876.1:ENST00000650632.1:ENST00000650102.1:ENST00000649735.1:ENST00000647621.1:ENST00000598410.5:ENST00000593695.5:ENST00000599577.5:ENST00000594389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	109	2	2.68048	2.727005	2.77353	0.0370229	0.020416	0.129768	0.102668
chr16	81639867	81639967	6509696	0	+	0.57	(0.523,0.58]	chr16	645926	178	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	3	78	2	2.34664	2.726895	3.10715	0.0418959	0.0413259	0.148318	0.136901
chr17	55313927	55314027	6757603	0	+	0.42	(0.419,0.45]	chr17	681718	246	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	165	2	2.39252	2.7267	3.06088	0.028492	0.0218787	0.115177	0.106893
chr7	75919101	75919201	3396644	0	+	0.49	(0.485,0.523]	chr7	328047	4	SS5_PROX	SS5_PROX:INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	61	2	2.53228	2.7262500000000003	2.92022	0.0614918	0.0555127	0.18013	0.154188
chr6	154779733	154779832	3044577	0	+	0.252525	[0,0.29]	chr6	296638	13	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	70	2	2.71826	2.726185	2.73411	0.0648743	0.0172559	0.162218	0.0923809
chr10	114433982	114434081	4762103	0	-	0.50505	(0.485,0.523]	chr10	455500	30	UTR3	UTR3:EXON_MRNA	ABLIM1	ENSG00000099204.21	ENST00000533213.7:ENST00000392955.7:ENST00000392952.7	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.5366	2.7259849999999997	2.91537	0.0953348	0.0298565	0.189038	0.126732
chr20	61971685	61971785	7582831	0	-	0.52	(0.485,0.523]	chr20	792262	175	INTRON	INTRON	TAF4	ENSG00000130699.20	ENST00000474089.5	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.5366	2.7259849999999997	2.91537	0.0953348	0.0298565	0.189038	0.126732
chr7	4991936	4992034	3310650	0	+	0.520408	(0.485,0.523]	chr7	320963	24	INTRON	INTRON	RNF216P1	ENSG00000196204.12	ENST00000406089.6:ENST00000477090.5:ENST00000404006.5:ENST00000403969.5:ENST00000494947.5:ENST00000406608.2:ENST00000405396.2:ENST00000464479.1	lncRNA	lncRNA	lncRNA	lncRNA	2	57	2	2.5366	2.7259849999999997	2.91537	0.0953348	0.0298565	0.189038	0.126732
chr20	33009661	33009757	7457385	0	+	0.645833	(0.58,1]	chr20	776365	6	INTRON	INTRON	BPIFB2	ENSG00000078898.7	ENST00000170150.4	protein_coding	protein_coding	protein_coding	protein_coding	5	113	2	2.48127	2.72572	2.97017	0.0346335	0.00858469	0.126423	0.0612699
chr2	235510435	235510535	1062700	0	+	0.42	(0.419,0.45]	chr2	115651	152	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	65	2	2.68635	2.725375	2.7644	0.0876314	0.0447981	0.183437	0.154539
chr14	19304514	19304609	5928407	0	-	0.578947	(0.523,0.58]	chr14	580404	1	INTRON	INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	5	125	2	2.66944	2.72452	2.7796	0.0437689	0.00988091	0.139708	0.0664239
chr6	157311784	157311884	3298409	0	-	0.54	(0.523,0.58]	chr6	319197	184	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	12	224	2	2.21483	2.724365	3.2339	0.0169421	0.0138412	0.0888811	0.0819723
chrX	1398524	1398624	7830146	0	+	0.68	(0.58,1]	chrX	822056	3	SS3_PROX	SS3_PROX:INTRON	LINC00106	ENSG00000236871.7	ENST00000434938.7:ENST00000430235.7	lncRNA	lncRNA	lncRNA	lncRNA	3	70	2	2.35391	2.7239649999999997	3.09402	0.0600041	0.0174733	0.158506	0.0928044
chr14	30920705	30920805	5950935	0	-	0.28	[0,0.29]	chr14	583071	12	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000366206.2:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	167	2	1.72221	2.72389	3.72557	0.104085	6.7367e-4	0.198316	0.0108081
chr14	54789937	54790036	5821696	0	+	0.59596	(0.58,1]	chr14	569165	11	UTR3	UTR3:EXON_MRNA	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9	protein_coding	protein_coding	protein_coding	protein_coding	4	83	2	1.96218	2.723605	3.48503	0.0832369	0.006811	0.180677	0.0524379
chr3	71412759	71412859	1829576	0	-	0.4	(0.39,0.419]	chr3	188242	521	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000649145.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	83	2	2.64369	2.722	2.80031	0.0728013	0.0250481	0.169397	0.114418
chr1	2240432	2240532	4615	0	+	0.66	(0.58,1]	chr1	1048	74	INTRON	INTRON	SKI	ENSG00000157933.10	ENST00000378536.5:ENST00000508416.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	66	2	2.6577	2.7218	2.7859	0.0695799	0.0136245	0.167028	0.0811816
chr22	15817786	15817881	7682901	0	+	0.547368	(0.523,0.58]	chr22	803564	19	INTRON	INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000383038.7:ENST00000447898.5	lncRNA	lncRNA	lncRNA	lncRNA	9	210	2	2.55152	2.72138	2.89124	0.0218121	0.0085239	0.100851	0.0609743
chrX	133656434	133656534	8112720	0	-	0.4	(0.39,0.419]	chrX	845480	595	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000692074.1:ENST00000667662.1:ENST00000666017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	83	2	2.7112	2.7212699999999996	2.73134	0.0798958	0.0217306	0.177037	0.106188
chr3	149180257	149180353	1939230	0	-	0.489583	(0.485,0.523]	chr3	197325	2	INTRON	INTRON	CP	ENSG00000047457.14	ENST00000481169.5:ENST00000264613.11:ENST00000494544.1:ENST00000490639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	188	2	2.14204	2.7208750000000004	3.29971	0.042209000000000003	0.0103942	0.149195	0.0686837
chr2	54570481	54570581	799419	0	+	0.45	(0.419,0.45]	chr2	90800	112	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7:ENST00000333896.5	protein_coding	protein_coding	protein_coding	protein_coding	3	86	2	2.5763	2.72078	2.86526	0.100818	0.0160871	0.196131	0.0896852
chr6	158628690	158628790	3064594	0	+	0.66	(0.58,1]	chr6	297763	2	SS5_PROX	SS5_PROX:INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	9	181	2	2.50512	2.720735	2.93635	0.0146321	0.00761897	0.0826577	0.0561937
chr19	939725	939825	7185243	0	+	0.57	(0.523,0.58]	chr19	730741	66	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	76	2	2.52319	2.7205950000000003	2.918	0.0558053	0.0287266	0.154188	0.123764
chr21	44873216	44873308	7678575	0	-	0.663043	(0.58,1]	chr21	802777	3	SS5_PROX	SS5_PROX:INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	22	620	2	2.39645	2.720205	3.0439600000000002	0.0102276	0.00420558	0.0678072	0.0421454
chr2	42199429	42199529	773341	0	+	0.35	(0.33,0.36]	chr2	88922	294	INTRON	INTRON	EML4	ENSG00000143924.19	ENST00000318522.10:ENST00000402711.6:ENST00000409040.1:ENST00000482660.1:ENST00000401738.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	155	2	2.3103	2.7202	3.1301	0.0244332	0.0219868	0.113411	0.101474
chr17	7177993	7178084	6847856	0	-	0.505495	(0.485,0.523]	chr17	693467	5	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574388.5:ENST00000573596.1:ENST00000573083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	266	2	2.42495	2.719855	3.01476	0.014105	0.0105411	0.0812398	0.0691811
chr1	26996208	26996306	70357	0	+	0.591837	(0.58,1]	chr1	7897	12	INTRON	INTRON	TRNP1	ENSG00000253368.4	ENST00000522111.3:ENST00000531285.1	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.6577	2.71978	2.78186	0.0695799	0.0342923	0.167028	0.13449
chr19	41265221	41265315	7262627	0	+	0.617021	(0.58,1]	chr19	744940	5	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	HNRNPUL1	ENSG00000105323.18	ENST00000352456.7:ENST00000595018.5:ENST00000597725.5:ENST00000599719.5:ENST00000601309.5:ENST00000392006.8:ENST00000378215.8:ENST00000595196.5:ENST00000617774.1:ENST00000602130.5:ENST00000601336.5:ENST00000593587.5:ENST00000594207.1:ENST00000263367.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	50	2	2.6577	2.71978	2.78186	0.0695799	0.0342923	0.167028	0.13449
chr9	133735194	133735293	4427935	0	-	0.626263	(0.58,1]	chr9	423136	6	INTRON	INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000427237.6:ENST00000298628.6	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.6577	2.71978	2.78186	0.0695799	0.0342923	0.167028	0.13449
chr2	235515830	235515930	1062754	0	+	0.51	(0.485,0.523]	chr2	115651	206	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	144	2	2.45299	2.71723	2.98147	0.0261434	0.0161218	0.110034	0.0897835
chr7	47499915	47500015	3588811	0	-	0.51	(0.485,0.523]	chr7	346132	184	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	3	81	2	2.35971	2.717095	3.07448	0.0702693	0.0214987	0.168159	0.10537
chr12	120981083	120981182	5340941	0	+	0.59596	(0.58,1]	chr12	521546	16	INTRON	INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000400024.6:ENST00000560968.5:ENST00000402929.5:ENST00000535955.5:ENST00000538626.2:ENST00000538646.5:ENST00000541924.5:ENST00000544574.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	2.45703	2.71708	2.97713	0.0933945	0.0226795	0.188571	0.108193
chr19	1409993	1410079	7187446	0	+	0.627907	(0.58,1]	chr19	731283	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	91	2	1.99714	2.716195	3.43525	0.0393327	0.0187495	0.143336	0.0936297
chr10	96142555	96142655	4560213	0	+	0.28	[0,0.29]	chr10	435112	69	INTRON	INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	116	2	2.35273	2.71578	3.07883	0.0615527	0.00425693	0.158684	0.0384311
chr20	62957154	62957247	7508267	0	+	0.645161	(0.58,1]	chr20	783175	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5:ENST00000411611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	242	2	2.10489	2.71526	3.32563	0.0380979	0.00112478	0.131324	0.0153963
chr11	65424670	65424770	4871588	0	+	0.46	(0.45,0.485]	chr11	468177	20	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000642367.1	lncRNA	lncRNA	lncRNA	lncRNA	97	2349	2	2.25813	2.7149	3.17167	0.00745155	0.00529625	0.055384	0.047841
chr15	67076888	67076987	6139185	0	+	0.565657	(0.523,0.58]	chr15	603934	86	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.61478	2.7140050000000002	2.81323	0.0650388	0.052707	0.167062	0.162385
chr17	58090969	58091068	6764174	0	+	0.383838	(0.36,0.39]	chr17	682242	18	UTR3	UTR3:EXON_MRNA	DYNLL2	ENSG00000264364.3	ENST00000579991.3	protein_coding	protein_coding	protein_coding	protein_coding	5	114	2	2.31684	2.71375	3.11066	0.0465988	0.0249685	0.143232	0.114418
chr17	38727296	38727396	6729356	0	+	0.53	(0.523,0.58]	chr17	676371	18	UTR3	UTR3:EXON_MRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5	protein_coding	protein_coding	protein_coding	protein_coding	13	314	2	2.32719	2.713655	3.10012	0.037733	0.00164913	0.131324	0.0202545
chr11	65428065	65428165	4871622	0	+	0.43	(0.419,0.45]	chr11	468177	54	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	43	1271	2	2.32763	2.713545	3.09946	0.00926929	0.00886994	0.0641188	0.0634853
chr14	103103940	103103996	5921852	0	+	0.803571	(0.58,1]	chr14	579209	1	CDS	CDS:EXON_MRNA	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000559116.1:ENST00000560925.5:ENST00000560102.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	51	2	2.63525	2.713515	2.79178	0.0565563	0.0459151	0.154743	0.154343
chr2	61538057	61538157	1158377	0	-	0.6	(0.58,1]	chr2	126972	6	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000401558.7:ENST00000428210.5:ENST00000406957.5:ENST00000443240.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	19	382	2	2.50748	2.71263	2.91778	0.00805014	0.00429577	0.0600296	0.0387443
chr17	78797529	78797628	6979424	0	-	0.585859	(0.58,1]	chr17	712642	20	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	USP36	ENSG00000055483.20	ENST00000588130.5:ENST00000587010.5:ENST00000591052.5:ENST00000589225.5:ENST00000587379.1:ENST00000592231.6:ENST00000449938.7:ENST00000542802.7:ENST00000693020.1:ENST00000312010.10	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	89	2	2.32207	2.7122	3.10233	0.0631758	0.00607723	0.161352	0.0487928
chr19	40804072	40804171	7262529	0	+	0.606061	(0.58,1]	chr19	744917	1	EXON_MRNA	EXON_MRNA:INTRON	EGLN2	ENSG00000269858.6	ENST00000303961.9:ENST00000406058.6:ENST00000593726.5:ENST00000597746.5:ENST00000594140.5:ENST00000599579.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	66	2	2.56085	2.711655	2.86246	0.0803939	0.0112778	0.177452	0.0717097
chr17	72561315	72561415	6963924	0	-	0.66	(0.58,1]	chr17	710389	269	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	8	174	2	1.98597	2.71148	3.43699	0.0670812	7.95833e-4	0.163063	0.0120989
chr2	78183117	78183217	1209281	0	-	0.38	(0.36,0.39]	chr2	130071	2429	INTRON	INTRON	ENSG00000227088	ENSG00000227088.2	ENST00000667782.1	lncRNA	lncRNA	lncRNA	lncRNA	4	99	2	2.42554	2.711315	2.99709	0.054944	0.0257828	0.153337	0.116361
chr12	120978117	120978217	5524701	0	-	0.6	(0.58,1]	chr12	544219	8	INTRON	INTRON	HNF1A-AS1	ENSG00000241388.5	ENST00000619441.1:ENST00000647473.1:ENST00000646404.1:ENST00000537361.1:ENST00000433033.3:ENST00000535301.2	lncRNA	lncRNA	lncRNA	lncRNA	4	82	2	1.96011	2.711215	3.46232	0.0549599	0.0178328	0.168901	0.0915706
chr14	39271876	39271975	5792220	0	+	0.585859	(0.58,1]	chr14	567494	40	INTRON	INTRON	MIA2	ENSG00000150527.18	ENST00000553728.1:ENST00000640607.2:ENST00000554392.5:ENST00000555716.5:ENST00000341749.7:ENST00000557038.5:ENST00000396165.8:ENST00000556990.1:ENST00000396158.6:ENST00000280083.7:ENST00000341502.9:ENST00000556148.5:ENST00000348007.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	206	2	2.34794	2.71103	3.07412	0.0111082	0.00910009	0.0713811	0.0631539
chr2	200365333	200365433	986546	0	+	0.58	(0.523,0.58]	chr2	108296	137	INTRON	INTRON	SPATS2L	ENSG00000196141.14	ENST00000439084.5:ENST00000409718.5:ENST00000358677.9:ENST00000409988.7:ENST00000409385.5:ENST00000439395.5:ENST00000444012.5:ENST00000451764.6:ENST00000360760.9:ENST00000423749.5:ENST00000457757.5:ENST00000471601.5:ENST00000428692.5:ENST00000453663.5:ENST00000409140.8:ENST00000459656.5:ENST00000471533.5:ENST00000409397.6:ENST00000619961.4:ENST00000409151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	58	2	2.68276	2.71083	2.7389	0.072318	0.0464998	0.168347	0.156036
chr17	29083823	29083922	6875938	0	-	0.424242	(0.419,0.45]	chr17	697789	10	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000529578.5:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000546105.5:ENST00000527312.5:ENST00000531438.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	94	2	2.49654	2.709955	2.92337	0.0662255	0.0333415	0.162385	0.133139
chr2	160453645	160453745	1293087	0	-	0.44	(0.419,0.45]	chr2	138809	208	INTRON	INTRON	RBMS1	ENSG00000153250.21	ENST00000348849.8:ENST00000474820.5:ENST00000491781.5:ENST00000477486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	86	2	2.38853	2.70946	3.03039	0.0550674	0.0427256	0.153454	0.15001
chr16	89291183	89291283	6659715	0	-	0.59	(0.58,1]	chr16	666640	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	104	2	2.46565	2.70939	2.95313	0.0435972	0.0101595	0.139245	0.0677833
chr13	97363135	97363235	5632222	0	+	0.48	(0.45,0.485]	chr13	553214	51	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000449284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	122	2	2.3538	2.7085600000000003	3.06332	0.0467992	0.017414	0.143232	0.0928044
chr16	31187530	31187629	6440338	0	+	0.363636	(0.36,0.39]	chr16	638593	8	EXON_MRNA	EXON_MRNA:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487509.6:ENST00000568685.1:ENST00000474990.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	114	2	2.36211	2.70855	3.05499	0.0505441	0.0226177	0.148456	0.108193
chrX	20152005	20152104	7994250	0	-	0.434343	(0.419,0.45]	chrX	836233	22	UTR3	UTR3:EXON_MRNA	RPS6KA3	ENSG00000177189.14	ENST00000379565.9	protein_coding	protein_coding	protein_coding	protein_coding	10	275	2	2.58343	2.7085150000000002	2.8336	0.0251011	0.0100476	0.107672	0.0670956
chr10	119218044	119218144	4593427	0	+	0.45	(0.419,0.45]	chr10	439167	50	INTRON	INTRON	GRK5	ENSG00000198873.12	ENST00000392870.3	protein_coding	protein_coding	protein_coding	protein_coding	3	87	2	2.30548	2.7085100000000004	3.11154	0.04996	0.0490796	0.161395	0.146142
chr21	43416446	43416544	7676231	0	-	0.632653	(0.58,1]	chr21	802488	21	UTR3	UTR3:EXON_MRNA	SIK1	ENSG00000142178.9	ENST00000270162.8	protein_coding	protein_coding	protein_coding	protein_coding	4	81	2	2.00788	2.707775	3.40767	0.0498302	0.0197265	0.161202	0.0958249
chr6	1818851	1818951	3081061	0	-	0.3	(0.29,0.33]	chr6	299482	759	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	123	2	2.5638	2.7072000000000003	2.8506	0.0597166	0.0101459	0.158144	0.0677334
chr3	32818932	32819032	1438881	0	+	0.64	(0.58,1]	chr3	153399	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	TRIM71	ENSG00000206557.6	ENST00000383763.6	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.7038	2.70711	2.71042	0.0648563	0.0396128	0.162218	0.143388
chr20	21148043	21148143	7447983	0	+	0.58	(0.523,0.58]	chr20	774958	20	INTRON	INTRON	KIZ	ENSG00000088970.16	ENST00000619574.4:ENST00000620891.4:ENST00000611685.4:ENST00000616848.4:ENST00000619189.5:ENST00000616679.4:ENST00000619179.4	protein_coding	protein_coding	protein_coding	protein_coding	4	93	2	2.03822	2.70708	3.37594	0.0516351	0.0272868	0.166192	0.112327
chr19	38649459	38649559	7257858	0	+	0.48	(0.45,0.485]	chr19	743980	8	INTRON	INTRON	ACTN4	ENSG00000130402.13	ENST00000252699.7:ENST00000588618.5:ENST00000440400.2:ENST00000424234.7:ENST00000589528.1:ENST00000390009.7:ENST00000495553.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	59	2	2.65647	2.706505	2.75654	0.0837071	0.0419966	0.181508	0.149115
chr16	21518327	21518427	6564823	0	-	0.6	(0.58,1]	chr16	654787	118	INTRON	INTRON	SMG1P3	ENSG00000180747.15	ENST00000522841.6:ENST00000437413.2:ENST00000435197.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	65	2	2.66286	2.70566	2.74846	0.0605281	0.0183006	0.158506	0.0958973
chr9	133853093	133853192	4428929	0	-	0.636364	(0.58,1]	chr9	423304	184	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	2	49	2	2.56085	2.70539	2.84993	0.0803939	0.0297842	0.177452	0.126591
chr20	49634330	49634429	7575367	0	-	0.30303	(0.29,0.33]	chr20	791483	15	UTR3	UTR3:EXON_MRNA	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	6	115	2	1.87956	2.70531	3.53106	0.0484664	0.0200287	0.160231	0.0971395
chr20	41559427	41559527	7564232	0	-	0.39	(0.36,0.39]	chr20	790090	77	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	86	2	2.26695	2.70459	3.14223	0.0873322	0.0209989	0.183248	0.103249
chr17	38704247	38704347	6729100	0	+	0.6	(0.58,1]	chr17	676275	19	EXON_LNCRNA	EXON_LNCRNA	ENSG00000277969	ENSG00000277969.1	ENST00000612330.1	lncRNA	lncRNA	lncRNA	lncRNA	3	65	2	2.7038	2.704425	2.70505	0.0648563	0.0165599	0.162218	0.0917029
chr15	25016005	25016103	6064013	0	+	0.397959	(0.39,0.419]	chr15	595414	9	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	10	246	2	2.51249	2.70442	2.89635	0.0255626	0.0101498	0.109062	0.0677546
chr7	47367067	47367167	3587462	0	-	0.6	(0.58,1]	chr7	346030	204	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	2.37998	2.703745	3.02751	0.0385189	0.0345705	0.135397	0.131324
chr6	158567824	158567924	3063973	0	+	0.54	(0.523,0.58]	chr6	297687	72	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	10	246	2	2.53327	2.703645	2.87402	0.0290795	0.00434035	0.116079	0.0390182
chr19	6708045	6708141	7322842	0	-	0.458333	(0.45,0.485]	chr19	756500	1	SS3_PROX	SS3_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695654.1:ENST00000695692.1:ENST00000695652.1:ENST00000695655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	58	2	2.53391	2.7035850000000003	2.87326	0.0985287	0.033576	0.193064	0.133139
chr1	630830	630930	377786	0	-	0.49	(0.485,0.523]	chr1	42520	3	SS5_PROX	SS5_PROX:INTRON	ENSG00000230021	ENSG00000230021.10	ENST00000419394.2:ENST00000440196.3:ENST00000641296.1:ENST00000634337.2:ENST00000635509.2:ENST00000648019.1:ENST00000440200.5:ENST00000452176.2	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	463	9004	2	2.44573	2.7033	2.96087	0.00648631	0.00361276	0.0532359	0.0342681
chr14	104868855	104868955	5925900	0	+	0.59	(0.58,1]	chr14	579941	3	SS5_PROX	SS5_PROX:INTRON	CEP170B	ENSG00000099814.17	ENST00000414716.8:ENST00000556508.5	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.40217	2.703265	3.00436	0.100879	0.00785951	0.196131	0.0576181
chr2	222913823	222913923	1038239	0	+	0.33	(0.29,0.33]	chr2	113229	22	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000542810.1:ENST00000540115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	223	2	1.83666	2.702495	3.56833	0.0870084	8.57382e-4	0.182711	0.012762
chr19	34385696	34385796	7243207	0	+	0.59	(0.58,1]	chr19	741718	37	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	95	2	2.52834	2.7024850000000002	2.87663	0.0249502	0.0241649	0.114418	0.106588
chr1	244848588	244848687	698079	0	-	0.383838	(0.36,0.39]	chr1	82286	16	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	HNRNPU	ENSG00000153187.20	ENST00000475997.6:ENST00000366527.4:ENST00000649899.1:ENST00000638230.1:ENST00000640657.1:ENST00000640306.1:ENST00000489705.2:ENST00000640264.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay:processed_transcript	2	62	2	2.66658	2.702355	2.73813	0.086575	0.0459393	0.182221	0.154743
chr1	43598626	43598719	107439	0	+	0.602151	(0.58,1]	chr1	13245	7	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5:ENST00000496447.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	67	2	2.27185	2.702095	3.13234	0.0433824	0.0322188	0.152119	0.121593
chr8	22387563	22387663	3770224	0	+	0.52	(0.485,0.523]	chr8	362727	77	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	23	536	2	2.38282	2.70031	3.0178	0.0302055	0.00122348	0.118016	0.016348
chr10	100970612	100970707	4569828	0	+	0.536842	(0.523,0.58]	chr10	436226	3	INTRON	INTRON	SEMA4G	ENSG00000095539.15	ENST00000519649.5:ENST00000521006.5:ENST00000518124.5:ENST00000518244.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	75	2	2.57767	2.69998	2.82229	0.090356	0.014802	0.186369	0.0847481
chr17	44064334	44064434	6910561	0	-	0.39	(0.36,0.39]	chr17	703400	4	SS3_PROX	SS3_PROX:INTRON	LSM12	ENSG00000161654.10	ENST00000591247.6:ENST00000293406.8:ENST00000585388.2	protein_coding	protein_coding	protein_coding	protein_coding	5	135	2	2.69612	2.699865	2.70361	0.0470335	0.0139551	0.143232	0.0825654
chr18	6042639	6042739	7110137	0	-	0.51	(0.485,0.523]	chr18	723828	100	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000400105.6:ENST00000317931.12:ENST00000400104.7	protein_coding	protein_coding	protein_coding	protein_coding	5	107	2	1.79404	2.69935	3.60466	0.0665927	0.0185431	0.190703	0.0929479
chr17	77376398	77376498	6804128	0	+	0.64	(0.58,1]	chr17	686755	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1:ENST00000423034.6:ENST00000590059.5:ENST00000587514.1:ENST00000590586.1:ENST00000592407.1:ENST00000427674.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	78	2	2.26544	2.69889	3.13234	0.0322188	0.0284795	0.123012	0.121593
chr14	19096005	19096105	5754300	0	+	0.52	(0.485,0.523]	chr14	564239	22	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000619938.1:ENST00000644980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	7	171	2	2.6149	2.697825	2.78075	0.0348833	0.00718088	0.126826	0.0542901
chr2	240622703	240622802	1075170	0	+	0.656566	(0.58,1]	chr2	116654	33	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	4	81	2	1.96011	2.69768	3.43525	0.0549599	0.0187495	0.168901	0.0936297
chr20	35010488	35010588	7550432	0	-	0.61	(0.58,1]	chr20	788281	2	SS3_PROX	SS3_PROX:INTRON	TRPC4AP	ENSG00000100991.12	ENST00000252015.3:ENST00000451813.6	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.48056	2.6975100000000003	2.91446	0.0464528	0.0277636	0.143232	0.12074
chr21	37367247	37367342	7618971	0	+	0.694737	(0.58,1]	chr21	796005	6	UTR5	UTR5:EXON_MRNA:INTRON	DYRK1A	ENSG00000157540.22	ENST00000646523.1:ENST00000647425.1:ENST00000647188.2:ENST00000647504.1:ENST00000644942.1	protein_coding	protein_coding	protein_coding	protein_coding	5	109	2	2.35718	2.69747	3.03776	0.0431826	0.00720487	0.138436	0.0543254
chr2	63000863	63000963	816935	0	+	0.27	[0,0.29]	chr2	92205	37	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000496857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	83	2	2.13325	2.697365	3.26148	0.0412365	0.0266041	0.148098	0.111446
chr10	75709058	75709158	4523254	0	+	0.34	(0.33,0.36]	chr10	432271	611	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	99	2	2.60488	2.6966900000000003	2.7885	0.090445	0.0109476	0.186505	0.0707236
chr18	58045706	58045788	7071455	0	+	0.560976	(0.523,0.58]	chr18	721078	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	106	2	2.68048	2.69623	2.71198	0.0408931	0.020416	0.136191	0.102668
chr22	46776328	46776428	7745142	0	+	0.58	(0.523,0.58]	chr22	812164	17	INTRON	INTRON	TBC1D22A	ENSG00000054611.14	ENST00000380995.5:ENST00000337137.9:ENST00000441936.5:ENST00000486163.5:ENST00000407381.7:ENST00000355704.7:ENST00000394449.6:ENST00000496139.5:ENST00000472791.5:ENST00000441162.5:ENST00000406733.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	59	2	2.54344	2.696225	2.84901	0.0617545	0.0599121	0.177269	0.158869
chrX	48939234	48939333	8040867	0	-	0.545455	(0.523,0.58]	chrX	838808	25	INTRON	INTRON	OTUD5	ENSG00000068308.15	ENST00000376488.8:ENST00000396743.7:ENST00000455452.5:ENST00000156084.8:ENST00000428668.2:ENST00000484499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	59	2	2.54344	2.696225	2.84901	0.0617545	0.0599121	0.177269	0.158869
chr10	75475309	75475408	4520911	0	+	0.636364	(0.58,1]	chr10	432249	237	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	2.45703	2.69609	2.93515	0.0933945	0.00938921	0.188571	0.064735
chrX	2703835	2703935	7830404	0	+	0.59	(0.58,1]	chrX	822102	117	INTRON	INTRON	CD99	ENSG00000002586.20	ENST00000611428.5:ENST00000381187.8:ENST00000381184.6:ENST00000647297.1:ENST00000381192.10:ENST00000645950.1:ENST00000482405.7:ENST00000624481.4:ENST00000646103.1:ENST00000623253.4:ENST00000449611.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	49	2	2.61009	2.695975	2.78186	0.0747426	0.0342923	0.172361	0.13449
chr3	172248076	172248176	1629560	0	+	0.44	(0.419,0.45]	chr3	170583	3	SS5_PROX	SS5_PROX:INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	141	2	2.23841	2.69592	3.15343	0.0736376	0.00839246	0.170373	0.0601673
chr17	55280781	55280881	6757266	0	+	0.43	(0.419,0.45]	chr17	681704	123	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	101	2	2.44585	2.69512	2.94439	0.062072	0.0254567	0.15958	0.115753
chr6	158572319	158572419	3064018	0	+	0.64	(0.58,1]	chr6	297687	117	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	2.32693	2.69512	3.06331	0.038688	0.036259	0.142489	0.127941
chr10	103688637	103688736	4756982	0	-	0.606061	(0.58,1]	chr10	454779	106	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	51	2	2.55596	2.6948999999999996	2.83384	0.0534085	0.0529065	0.167062	0.14912
chr2	62894863	62894962	815859	0	+	0.484848	(0.45,0.485]	chr2	92141	132	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding	16	409	2	2.51727	2.694835	2.8724	0.024418	0.0034938	0.106683	0.0338079
chr12	26746062	26746162	5400730	0	-	0.37	(0.36,0.39]	chr12	528735	199	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000545235.1:ENST00000242737.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	98	2	2.27894	2.6948	3.11066	0.0465988	0.0349959	0.143232	0.137031
chr2	11589528	11589626	720778	0	+	0.469388	(0.45,0.485]	chr2	84163	2	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000381483.6:ENST00000234142.9:ENST00000432985.1	protein_coding	protein_coding	protein_coding	protein_coding	4	106	2	2.14026	2.69393	3.2476	0.0991821	0.0056886	0.194246	0.046716
chr2	120042909	120043009	886177	0	+	0.42	(0.419,0.45]	chr2	100280	4	INTRON	INTRON	EPB41L5	ENSG00000115109.14	ENST00000263713.10:ENST00000443902.6:ENST00000331393.8:ENST00000443124.5:ENST00000452780.1:ENST00000466241.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	161	2	2.37107	2.69374	3.01641	0.030547499999999998	0.0229257	0.118898	0.109259
chr7	101138107	101138202	3431753	0	+	0.410526	(0.39,0.419]	chr7	332344	8	UTR3	UTR3:EXON_MRNA	SERPINE1	ENSG00000106366.9	ENST00000223095.5	protein_coding	protein_coding	protein_coding	protein_coding	39	1274	2	2.49409	2.6934649999999998	2.89284	0.0109513	0.00759784	0.0708586	0.0561937
chr5	881376	881474	2608189	0	-	0.469388	(0.45,0.485]	chr5	259472	3	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	BRD9	ENSG00000028310.18	ENST00000467963.6:ENST00000495265.5:ENST00000490814.6:ENST00000495794.5:ENST00000489816.5:ENST00000483173.5:ENST00000475706.5:ENST00000466684.5:ENST00000519838.5:ENST00000494422.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	93	2	2.51255	2.69337	2.87419	0.061784	0.0197176	0.158872	0.100774
chr3	172115287	172115387	1628222	0	+	0.44	(0.419,0.45]	chr3	170543	23	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	104	2	2.01056	2.6929049999999997	3.37525	0.0603226	0.0333115	0.178428	0.123922
chr7	47366569	47366669	3587457	0	-	0.61	(0.58,1]	chr7	346030	199	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	3	69	2	2.09276	2.6922449999999998	3.29173	0.0619333	0.0243429	0.180615	0.106588
chr17	57475685	57475784	6761969	0	+	0.494949	(0.485,0.523]	chr17	682137	306	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	59	2	2.53228	2.691755	2.85123	0.0614918	0.0614408	0.18013	0.158506
chr22	35995152	35995252	7805493	0	-	0.4	(0.39,0.419]	chr22	817798	336	INTRON	INTRON	RBFOX2	ENSG00000100320.24	ENST00000438146.7:ENST00000695854.1	protein_coding	protein_coding	protein_coding	protein_coding	3	82	2	2.54293	2.690175	2.83742	0.102111	0.0165451	0.19738	0.0916874
chr12	132521538	132521638	5352829	0	+	0.62	(0.58,1]	chr12	523658	97	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.40217	2.68965	2.97713	0.100879	0.0226795	0.196131	0.108193
chr14	103107242	103107323	5921893	0	+	0.592593	(0.58,1]	chr14	579226	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.40217	2.68965	2.97713	0.100879	0.0226795	0.196131	0.108193
chr9	134331749	134331849	4260740	0	+	0.68	(0.58,1]	chr9	406311	47	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	2.40217	2.68965	2.97713	0.100879	0.0226795	0.196131	0.108193
chr10	103833720	103833820	4758442	0	-	0.49	(0.485,0.523]	chr10	454819	320	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.45723	2.688725	2.92022	0.0700289	0.0555127	0.195209	0.154188
chr16	85421522	85421622	6517286	0	+	0.52	(0.485,0.523]	chr16	646391	622	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.45723	2.688725	2.92022	0.0700289	0.0555127	0.195209	0.154188
chr18	74835813	74835913	7091635	0	+	0.52	(0.485,0.523]	chr18	722438	313	INTRON	INTRON	ZNF407	ENSG00000215421.10	ENST00000299687.10:ENST00000577538.5	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.45723	2.688725	2.92022	0.0700289	0.0555127	0.195209	0.154188
chr1	17589377	17589476	54073	0	+	0.545455	(0.523,0.58]	chr1	5465	5	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5	protein_coding	protein_coding	protein_coding	protein_coding	3	74	2	2.56415	2.6886900000000002	2.81323	0.0650388	0.0263234	0.162385	0.117901
chr17	17686449	17686549	6688899	0	+	0.6	(0.58,1]	chr17	671338	15	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	4	91	2	2.66286	2.6886099999999997	2.71436	0.0324479	0.0183006	0.121863	0.0958973
chr4	84905700	84905800	2274235	0	-	0.4	(0.39,0.419]	chr4	229367	83	INTRON	INTRON	WDFY3	ENSG00000163625.16	ENST00000295888.9:ENST00000509172.1:ENST00000502713.1	protein_coding	protein_coding	protein_coding	protein_coding	2	61	2	2.58263	2.68799	2.7933500000000002	0.0970705	0.0415789	0.190588	0.148959
chr2	152399593	152399693	926107	0	+	0.42	(0.419,0.45]	chr2	103058	635	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	4	101	2	2.5494	2.6852650000000002	2.82113	0.0733896	0.0203943	0.17026	0.102656
chr3	48423870	48423961	1766669	0	-	0.604396	(0.58,1]	chr3	182272	5	CDS	CDS:EXON_MRNA:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000456774.5:ENST00000449094.5:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	66	2	2.27185	2.685045	3.09824	0.0433824	0.0341637	0.152119	0.125129
chr9	40105857	40105957	4309073	0	-	0.65	(0.58,1]	chr9	411930	1	SS5_PROX	SS5_PROX:INTRON	ENSG00000284116	ENSG00000284116.1	ENST00000639363.1	lncRNA	lncRNA	lncRNA	lncRNA	4	77	2	2.37881	2.684805	2.9908	0.0409591	0.0219036	0.136191	0.106977
chr7	73597081	73597181	3602826	0	-	0.66	(0.58,1]	chr7	347624	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000467221.1:ENST00000476404.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	77	2	2.342	2.684755	3.02751	0.0385189	0.023878	0.131324	0.111721
chr3	48428852	48428952	1766723	0	-	0.64	(0.58,1]	chr3	182284	2	SS5_PROX	SS5_PROX:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	16	305	2	2.30048	2.68449	3.0685	0.00823585	0.00731517	0.0593945	0.0568523
chr14	19302930	19303029	5928391	0	-	0.656566	(0.58,1]	chr14	580401	44	EXON_LNCRNA	EXON_LNCRNA:INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	8	161	2	2.66695	2.684015	2.70108	0.0246017	0.00534232	0.107084	0.0447425
chr1	1225627	1225724	380445	0	-	0.659794	(0.58,1]	chr1	42851	13	INTRON	INTRON	SDF4	ENSG00000078808.19	ENST00000660930.1:ENST00000465727.5:ENST00000263741.12:ENST00000360001.12:ENST00000403997.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	64	2	2.6194	2.68393	2.74846	0.0605281	0.0202577	0.158506	0.102015
chr11	65423471	65423571	4871576	0	+	0.63	(0.58,1]	chr11	468177	8	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000612303.2:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000642367.1	lncRNA	lncRNA	lncRNA	lncRNA	241	4804	2	2.15258	2.68385	3.21512	0.00607071	0.00212799	0.0487637	0.0289937
chr2	239276980	239277080	1391478	0	-	0.64	(0.58,1]	chr2	148740	254	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	64	2	2.57459	2.683185	2.79178	0.0565563	0.0224622	0.154343	0.108193
chr1	61113639	61113739	146416	0	+	0.38	(0.36,0.39]	chr1	17144	14	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	242	2	2.59474	2.68318	2.77162	0.0309974	0.00826628	0.119758	0.0596062
chr17	72561116	72561216	6963922	0	-	0.57	(0.523,0.58]	chr17	710389	267	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	4	91	2	2.66054	2.6828950000000003	2.70525	0.0806884	0.0118488	0.177452	0.0746945
chr10	42593109	42593208	4674947	0	-	0.292929	(0.29,0.33]	chr10	445874	5	CDS	CDS:EXON_MRNA:INTRON	ZNF33B	ENSG00000196693.15	ENST00000462075.1:ENST00000486187.5:ENST00000465206.5:ENST00000613419.4:ENST00000359467.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	107	2	2.62715	2.68238	2.73761	0.0704177	0.0108083	0.168159	0.070543
chr8	38766897	38766997	3802224	0	+	0.38	(0.36,0.39]	chr8	365828	91	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	112	2	2.55243	2.680705	2.80898	0.0582607	0.0175699	0.155373	0.0933029
chr20	37506929	37507027	7559837	0	-	0.530612	(0.523,0.58]	chr20	789576	31	INTRON	INTRON	BLCAP	ENSG00000166619.15	ENST00000411780.1:ENST00000467603.1	protein_coding	processed_transcript	protein_coding	processed_transcript	4	101	2	2.40998	2.6806900000000002	2.9514	0.0653274	0.0109262	0.162385	0.0706366
chr17	55278182	55278282	6757240	0	+	0.41	(0.39,0.419]	chr17	681704	97	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	238	2	2.04788	2.680185	3.31249	0.0243908	0.0177462	0.113311	0.0912889
chr20	32377545	32377645	7455881	0	+	0.34	(0.33,0.36]	chr20	776143	51	INTRON	INTRON	ASXL1	ENSG00000171456.21	ENST00000651418.1:ENST00000375687.10:ENST00000613218.4:ENST00000644587.1:ENST00000620121.4:ENST00000646985.1:ENST00000643168.1:ENST00000306058.9:ENST00000645688.1:ENST00000470145.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	141	2	1.65502	2.680145	3.70527	0.0651303	0.0170176	0.186895	0.0889995
chr2	39108340	39108440	1127237	0	-	0.48	(0.45,0.485]	chr2	123480	100	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	101	2	2.13862	2.67949	3.22036	0.0769922	0.016408	0.175175	0.0911382
chr13	75481069	75481169	5727995	0	-	0.74	(0.58,1]	chr13	561723	4	SS5_PROX	SS5_PROX:INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	11	227	2	2.65833	2.679465	2.7006	0.0169773	0.00440034	0.0889149	0.0393688
chr22	46291050	46291143	7743261	0	+	0.526882	(0.523,0.58]	chr22	811892	8	INTRON	INTRON	TTC38	ENSG00000075234.17	ENST00000381031.8:ENST00000451998.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	58	2	2.54344	2.6783349999999997	2.81323	0.0650388	0.0599121	0.177269	0.162385
chr16	89383801	89383901	6660664	0	-	0.57	(0.523,0.58]	chr16	666720	103	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000647238.1:ENST00000644045.1:ENST00000643147.1:ENST00000644139.1:ENST00000568512.6:ENST00000566973.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	89	2	2.1913299999999998	2.6782	3.16507	0.0382777	0.0378186	0.140551	0.131324
chr5	93584359	93584453	2482614	0	+	0.765957	(0.58,1]	chr5	247286	13	UTR5	UTR5:EXON_MRNA	NR2F1	ENSG00000175745.14	ENST00000327111.8	protein_coding	protein_coding	protein_coding	protein_coding	5	92	2	1.71727	2.67802	3.63877	0.0706167	0.0127766	0.196546	0.0769397
chr2	11335500	11335600	1089310	0	-	0.31	(0.29,0.33]	chr2	118747	474	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	91	2	2.65705	2.6780049999999997	2.69896	0.0789527	0.0124418	0.175712	0.0765738
chr3	30613564	30613664	1433161	0	+	0.56	(0.523,0.58]	chr3	152992	62	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4	protein_coding	protein_coding	protein_coding	protein_coding	21	489	2	1.88723	2.6777699999999998	3.46831	0.0615103	4.38439e-4	0.158584	0.00797424
chr9	14791950	14792047	4279622	0	-	0.494845	(0.485,0.523]	chr9	408901	25	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7:ENST00000466679.1:ENST00000497634.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	104	2	2.65005	2.67758	2.70511	0.045035	0.0195331	0.141162	0.1
chr16	81482172	81482272	6508113	0	+	0.54	(0.523,0.58]	chr16	645906	363	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	2	57	2	2.61478	2.6768400000000003	2.7389	0.072318	0.052707	0.168347	0.167062
chr10	79216374	79216474	4533525	0	+	0.58	(0.523,0.58]	chr10	432456	1	SS5_PROX	SS5_PROX:INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	59	2	2.46839	2.6761549999999996	2.88392	0.0683019	0.0586821	0.193274	0.155604
chr17	82007838	82007937	6815375	0	+	0.616162	(0.58,1]	chr17	688641	36	EXON_MRNA	EXON_MRNA:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5:ENST00000578236.5:ENST00000581608.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	164	2	2.31333	2.675915	3.0385	0.0466101	0.00200332	0.143232	0.0230381
chr6	158039738	158039837	3059895	0	+	0.606061	(0.58,1]	chr6	297390	57	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	133	2	2.30819	2.67517	3.04215	0.0177015	0.0152921	0.0910644	0.0866186
chr16	22444028	22444128	6422242	0	+	0.57	(0.523,0.58]	chr16	635236	59	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000446662.5:ENST00000381231.5:ENST00000309865.11:ENST00000691795.1:ENST00000308347.10:ENST00000687936.1:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	4	89	2	2.15455	2.67386	3.19317	0.0408176	0.0366207	0.146983	0.128697
chr14	23522100	23522200	5757175	0	+	0.68	(0.58,1]	chr14	564963	73	INTRON	INTRON	ZFHX2-AS1	ENSG00000157306.14	ENST00000556354.5:ENST00000553985.1:ENST00000554403.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	2	51	2	2.47204	2.673375	2.87471	0.0623526	0.0495478	0.181127	0.146562
chr6	158041028	158041127	3059908	0	+	0.515152	(0.485,0.523]	chr6	297390	70	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	57	2	2.60361	2.67237	2.74113	0.0719691	0.0541523	0.168159	0.167824
chr10	102650176	102650275	4576526	0	+	0.565657	(0.523,0.58]	chr10	437284	5	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1:ENST00000487927.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	112	2	2.01731	2.671675	3.32604	0.0354235	0.0296013	0.137983	0.116079
chr17	43143076	43143171	6737694	0	+	0.315789	(0.29,0.33]	chr17	678322	1	INTRON	INTRON	NBR2	ENSG00000198496.12	ENST00000657841.1:ENST00000460115.5:ENST00000467245.5	lncRNA	lncRNA	lncRNA	lncRNA	5	103	2	2.45655	2.671465	2.88638	0.0566203	0.0162941	0.154343	0.0906764
chr16	31493382	31493466	6580393	0	-	0.654762	(0.58,1]	chr16	657882	5	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RUSF1	ENSG00000140688.17	ENST00000570164.5:ENST00000327237.7:ENST00000568491.1:ENST00000430477.6:ENST00000567994.5:ENST00000567673.5:ENST00000541442.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	48	2	2.56085	2.671355	2.78186	0.0803939	0.0342923	0.177452	0.13449
chr8	667190	667290	3932395	0	-	0.63	(0.58,1]	chr8	376023	13	UTR3	UTR3:EXON_MRNA:INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000262109.8:ENST00000523053.1:ENST00000522893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	48	2	2.56085	2.671355	2.78186	0.0803939	0.0342923	0.177452	0.13449
chr3	30612167	30612267	1433147	0	+	0.32	(0.29,0.33]	chr3	152992	48	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4	protein_coding	protein_coding	protein_coding	protein_coding	10	230	2	2.38349	2.671245	2.959	0.0491166	0.00261658	0.146142	0.0278348
chr3	30613265	30613365	1433158	0	+	0.44	(0.419,0.45]	chr3	152992	59	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4	protein_coding	protein_coding	protein_coding	protein_coding	13	255	2	1.83324	2.6710849999999997	3.50893	0.0386267	0.0137551	0.142385	0.0801306
chr16	16159983	16160083	6556456	0	-	0.61	(0.58,1]	chr16	653071	4	SS3_PROX	SS3_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	119	2	2.48569	2.67011	2.85453	0.0251699	0.0122197	0.107898	0.0757339
chr2	42190331	42190431	773250	0	+	0.41	(0.39,0.419]	chr2	88922	203	INTRON	INTRON	EML4	ENSG00000143924.19	ENST00000318522.10:ENST00000402711.6:ENST00000409040.1:ENST00000482660.1:ENST00000401738.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	12	295	2	2.49246	2.66974	2.84702	0.022953	0.00970843	0.102982	0.0661807
chr11	65425269	65425369	4871594	0	+	0.51	(0.485,0.523]	chr11	468177	26	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1	lncRNA	lncRNA	lncRNA	lncRNA	88	2060	2	2.06895	2.669585	3.27022	0.0115752	0.00391178	0.0732749	0.0404182
chr11	68471806	68471906	4883591	0	+	0.61	(0.58,1]	chr11	470696	106	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	2.63525	2.669525	2.7038	0.0648563	0.0459151	0.162218	0.154743
chr3	149180737	149180833	1939235	0	-	0.385417	(0.36,0.39]	chr3	197325	7	INTRON	INTRON	CP	ENSG00000047457.14	ENST00000481169.5:ENST00000264613.11:ENST00000494544.1:ENST00000490639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	84	2	2.2404	2.668945	3.09749	0.0905501	0.023009	0.186696	0.109581
chr16	24985597	24985697	6570790	0	-	0.41	(0.39,0.419]	chr16	655806	62	INTRON	INTRON	ARHGAP17	ENSG00000140750.17	ENST00000289968.11:ENST00000303665.9:ENST00000575975.5:ENST00000455311.6:ENST00000571480.5:ENST00000573625.5:ENST00000573449.5:ENST00000575447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	84	2	2.15477	2.668705	3.18264	0.0645366	0.042233	0.185295	0.13762
chr17	17822019	17822118	6865741	0	-	0.494949	(0.485,0.523]	chr17	695915	11	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	160	2	2.02969	2.66858	3.30747	0.0348021	0.0148147	0.136301	0.0831257
chr10	79070269	79070369	4532057	0	+	0.8	(0.58,1]	chr10	432420	6	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.38295	2.66804	2.95313	0.0730701	0.0435972	0.199669	0.139245
chr10	131917988	131918088	4616196	0	+	0.6	(0.58,1]	chr10	441069	50	INTRON	INTRON	PPP2R2D	ENSG00000175470.20	ENST00000455566.6:ENST00000616467.4:ENST00000482010.6:ENST00000470416.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	52	2	2.38295	2.66804	2.95313	0.0730701	0.0435972	0.199669	0.139245
chr22	21476452	21476548	7768630	0	-	0.666667	(0.58,1]	chr22	814686	14	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PI4KAP2	ENSG00000183506.17	ENST00000486209.5:ENST00000477296.5:ENST00000470274.5:ENST00000463608.5:ENST00000462560.6:ENST00000450651.5:ENST00000360806.9:ENST00000494740.5	transcribed_unitary_pseudogene	retained_intron	transcribed_unitary_pseudogene	retained_intron:processed_transcript:transcribed_unitary_pseudogene	2	52	2	2.38295	2.66804	2.95313	0.0730701	0.0435972	0.199669	0.139245
chr11	65435454	65435554	4871696	0	+	0.43	(0.419,0.45]	chr11	468177	128	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	52	1680	2	2.31266	2.666685	3.02071	0.00987068	0.00947813	0.0664239	0.0656057
chr6	144331318	144331418	3020322	0	+	0.42	(0.419,0.45]	chr6	295142	3	SS5_PROX	SS5_PROX:INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1:ENST00000628146.2	protein_coding	protein_coding	protein_coding	protein_coding	3	82	2	2.6465	2.6664250000000003	2.68635	0.0876314	0.0255963	0.183437	0.115966
chr3	32829429	32829529	1438986	0	+	0.54	(0.523,0.58]	chr3	153401	101	INTRON	INTRON	TRIM71	ENSG00000206557.6	ENST00000383763.6	protein_coding	protein_coding	protein_coding	protein_coding	6	141	2	2.26887	2.666265	3.06366	0.0244197	0.0227901	0.113355	0.102982
chr14	89336853	89336953	6027471	0	-	0.4	(0.39,0.419]	chr14	591456	32	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	80	2	2.62127	2.666235	2.7112	0.0923527	0.0217306	0.188571	0.106188
chr17	55306943	55307043	6757533	0	+	0.46	(0.45,0.485]	chr17	681718	176	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	125	2	2.38898	2.666135	2.94329	0.0698506	0.00708168	0.167349	0.054056
chr3	172135344	172135444	1628426	0	+	0.35	(0.33,0.36]	chr3	170555	14	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	162	2	2.52	2.665655	2.81131	0.0370834	0.0123813	0.12995	0.0765738
chr10	35466140	35466240	4476975	0	+	0.52	(0.485,0.523]	chr10	428126	103	INTRON	INTRON	CCNY	ENSG00000108100.18	ENST00000374706.5:ENST00000490012.6:ENST00000493157.6:ENST00000374704.8:ENST00000265375.13:ENST00000339497.7:ENST00000492478.5:ENST00000470025.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	73	2	2.55201	2.6653900000000004	2.77877	0.0682166	0.0272692	0.164526	0.119337
chr1	12592203	12592303	402525	0	-	0.53	(0.523,0.58]	chr1	46222	112	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	74	2	2.34664	2.6652449999999996	2.98385	0.0505794	0.0413259	0.148456	0.148318
chr1	26996796	26996894	70363	0	+	0.55102	(0.523,0.58]	chr1	7897	18	INTRON	INTRON	TRNP1	ENSG00000253368.4	ENST00000522111.3:ENST00000531285.1	protein_coding	protein_coding	protein_coding	protein_coding	7	122	2	1.79201	2.665075	3.53814	0.0504559	0.020829	0.162812	0.0990379
chr17	43542779	43542879	6909596	0	-	0.55	(0.523,0.58]	chr17	703271	59	INTRON	INTRON	ETV4	ENSG00000175832.13	ENST00000538265.5:ENST00000319349.10:ENST00000393664.6:ENST00000545954.5:ENST00000545089.5:ENST00000591713.5:ENST00000590236.5:ENST00000585508.5:ENST00000587151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	152	2	2.62686	2.6643850000000002	2.70191	0.03022	0.0142983	0.118034	0.0833845
chr3	37981345	37981441	1444468	0	+	0.489583	(0.485,0.523]	chr3	154018	6	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CTDSPL	ENSG00000144677.15	ENST00000273179.10:ENST00000443503.6:ENST00000447745.5:ENST00000436654.1	protein_coding	protein_coding	protein_coding	protein_coding	4	90	2	2.02572	2.664185	3.30265	0.0532895	0.0306642	0.167062	0.119264
chr11	2668705	2668805	4971998	0	-	0.45	(0.419,0.45]	chr11	481197	605	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	13	293	2	2.17678	2.662845	3.14891	0.0188298	0.0180395	0.0980631	0.0921579
chrX	1397524	1397624	7830136	0	+	0.66	(0.58,1]	chrX	822054	3	SS5_PROX	SS5_PROX:INTRON	LINC00106	ENSG00000236871.7	ENST00000434938.7:ENST00000430235.7	lncRNA	lncRNA	lncRNA	lncRNA	4	86	2	2.35391	2.66204	2.97017	0.0600041	0.00858469	0.158506	0.0612699
chr2	3459762	3459846	711031	0	+	0.738095	(0.58,1]	chr2	83177	1	SS3_PROX	SS3_PROX:INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000479955.5:ENST00000497597.5:ENST00000473348.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	63	2	2.6194	2.6616	2.7038	0.0648563	0.0202577	0.162218	0.102015
chr20	31714649	31714749	7542950	0	-	0.4	(0.39,0.419]	chr20	787266	297	INTRON	INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	97	2	2.55645	2.66134	2.76623	0.0762396	0.019458	0.174496	0.099646
chr6	142326720	142326820	3012125	0	+	0.47	(0.45,0.485]	chr6	294688	167	INTRON	INTRON	ADGRG6	ENSG00000112414.15	ENST00000230173.10:ENST00000367608.6:ENST00000415128.6:ENST00000296932.13:ENST00000367609.8:ENST00000541199.5:ENST00000545477.1:ENST00000435011.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	77	2	2.28891	2.66119	3.03347	0.0489373	0.0479351	0.159092	0.146035
chr17	77297789	77297889	6803328	0	+	0.41	(0.39,0.419]	chr17	686716	25	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	112	2	1.85879	2.66113	3.46347	0.0633599	0.0275016	0.18377	0.112782
chr13	112726369	112726469	5652905	0	+	0.64	(0.58,1]	chr13	554906	88	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000466946.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	48	2	2.61009	2.6602550000000003	2.71042	0.0747426	0.0396128	0.172361	0.143388
chr19	5814808	5814907	7195534	0	+	0.606061	(0.58,1]	chr19	733105	90	INTRON	INTRON	NRTN	ENSG00000171119.3	ENST00000303212.3	protein_coding	protein_coding	protein_coding	protein_coding	2	48	2	2.61009	2.6602550000000003	2.71042	0.0747426	0.0396128	0.172361	0.143388
chr17	17737952	17738052	6689415	0	+	0.73	(0.58,1]	chr17	671344	134	INTRON	INTRON	RAI1	ENSG00000108557.20	ENST00000353383.6:ENST00000471135.2	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.52834	2.66006	2.79178	0.0565563	0.0249502	0.154343	0.114418
chrX	133929853	133929953	8115466	0	-	0.32	(0.29,0.33]	chrX	845529	949	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	156	2	2.54963	2.659675	2.76972	0.0510145	0.00599961	0.148503	0.0482757
chr11	96242595	96242695	5112562	0	-	0.4	(0.39,0.419]	chr11	496566	1487	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.58263	2.659415	2.7362	0.0970705	0.0461646	0.190588	0.155334
chr2	235515131	235515231	1062747	0	+	0.47	(0.45,0.485]	chr2	115651	199	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	81	2	2.33729	2.6592599999999997	2.98123	0.0752756	0.0270875	0.173058	0.119337
chr8	13084340	13084438	3939327	0	-	0.244898	[0,0.29]	chr8	376628	11	UTR3	UTR3:EXON_MRNA	DLC1	ENSG00000164741.15	ENST00000276297.9	protein_coding	protein_coding	protein_coding	protein_coding	4	91	2	2.44235	2.65915	2.87595	0.0532208	0.0123699	0.149778	0.076524
chr17	37316153	37316253	6892396	0	-	0.46	(0.45,0.485]	chr17	699918	165	INTRON	INTRON	ACACA	ENSG00000278540.5	ENST00000616317.5:ENST00000614428.4:ENST00000613146.4:ENST00000615229.4:ENST00000621960.1:ENST00000617548.1:ENST00000616352.4:ENST00000614789.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	75	2	2.62266	2.6588900000000004	2.69512	0.0794176	0.0243222	0.176565	0.113231
chr16	87919657	87919756	6657562	0	-	0.484848	(0.45,0.485]	chr16	666059	144	INTRON	INTRON	CA5A	ENSG00000174990.8	ENST00000649158.1:ENST00000648177.1:ENST00000649794.3:ENST00000648022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	75	2	2.58493	2.658845	2.73276	0.0754102	0.0263561	0.173278	0.118015
chr16	89298170	89298269	6659787	0	-	0.525253	(0.523,0.58]	chr16	666648	60	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	183	2	2.54415	2.65884	2.77353	0.0370229	0.00762776	0.129768	0.0562531
chr6	158340366	158340466	3061925	0	+	0.59	(0.58,1]	chr6	297592	257	INTRON	INTRON	ENSG00000274023:TULP4	ENSG00000274023.1:ENSG00000130338.13	ENST00000619713.1:ENST00000367097.8:ENST00000367094.6:ENST00000616856.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	2	47	2	2.40217	2.65855	2.91493	0.100879	0.0259506	0.196131	0.116361
chr17	7174067	7174137	6847809	0	-	0.671429	(0.58,1]	chr17	693450	1	SSB_ADJ	SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574330.5:ENST00000574388.5:ENST00000572879.5	protein_coding	protein_coding	protein_coding	protein_coding	6	126	2	2.50095	2.65778	2.81461	0.0334226	0.00731787	0.12421	0.0550721
chr9	133737457	133737556	4427958	0	-	0.646465	(0.58,1]	chr9	423136	29	INTRON	INTRON	SARDH	ENSG00000123453.19	ENST00000371872.8:ENST00000439388.6:ENST00000427237.6:ENST00000298628.6	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.48056	2.6572	2.83384	0.0529065	0.0277636	0.14912	0.12074
chr8	17883738	17883835	3946633	0	-	0.505155	(0.485,0.523]	chr8	377036	12	INTRON	INTRON	FGL1	ENSG00000104760.17	ENST00000398056.6:ENST00000427924.5:ENST00000522444.5:ENST00000381841.4:ENST00000381840.5:ENST00000398054.5:ENST00000518650.5	protein_coding	protein_coding	protein_coding	protein_coding	3	73	2	2.5366	2.656285	2.77597	0.0953348	0.0166536	0.189038	0.0917029
chr2	231043797	231043896	1047562	0	+	0.282828	[0,0.29]	chr2	114051	20	INTRON	INTRON	C2orf72	ENSG00000204128.6	ENST00000373640.5:ENST00000477463.1:ENST00000463834.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	50	2	2.5799	2.65599	2.73208	0.0797411	0.0409813	0.176933	0.147516
chrX	109688916	109689015	8091020	0	-	0.40404	(0.39,0.419]	chrX	843698	31	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000505855.1:ENST00000508092.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	150	2	2.62389	2.6559299999999997	2.68797	0.0479949	0.0125139	0.144601	0.0765738
chr1	1840481	1840581	384081	0	-	0.5	(0.485,0.523]	chr1	43823	4	INTRON	INTRON	GNB1	ENSG00000078369.18	ENST00000610897.4:ENST00000615252.4:ENST00000378609.9:ENST00000439272.6:ENST00000434686.6:ENST00000472614.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	57	2	2.53228	2.655525	2.77877	0.0682166	0.0614918	0.18013	0.164526
chr1	43554341	43554441	106982	0	+	0.52	(0.485,0.523]	chr1	13191	4	SS5_PROX	SS5_PROX:INTRON	PTPRF	ENSG00000142949.17	ENST00000617451.4:ENST00000359947.9:ENST00000438120.5:ENST00000436724.5:ENST00000372405.1:ENST00000437607.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	57	2	2.53228	2.655525	2.77877	0.0682166	0.0614918	0.18013	0.164526
chr7	32868366	32868464	3567874	0	-	0.428571	(0.419,0.45]	chr7	344303	3	UTR3	UTR3:EXON_MRNA	KBTBD2	ENSG00000170852.12	ENST00000304056.9	protein_coding	protein_coding	protein_coding	protein_coding	6	176	2	2.49855	2.65552	2.81249	0.0311168	0.022757200000000002	0.119936	0.108496
chr15	24985211	24985311	6063697	0	+	0.35	(0.33,0.36]	chr15	595387	29	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	7	175	2	2.53641	2.654985	2.77356	0.0423589	0.00828907	0.13762	0.0597346
chr17	55307941	55308041	6757543	0	+	0.51	(0.485,0.523]	chr17	681718	186	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	184	2	2.63345	2.6542899999999996	2.67513	0.0315316	0.00830857	0.120781	0.0598572
chr12	120984658	120984757	5340977	0	+	0.626263	(0.58,1]	chr12	521546	52	INTRON	INTRON	HNF1A	ENSG00000135100.19	ENST00000257555.11:ENST00000400024.6:ENST00000560968.5:ENST00000402929.5:ENST00000535955.5:ENST00000538626.2:ENST00000538646.5:ENST00000541924.5:ENST00000544574.5:ENST00000540108.1:ENST00000541395.5:ENST00000544413.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	174	2	1.92247	2.653375	3.38428	0.0602104	0.00144942	0.158506	0.0184581
chr20	26010662	26010759	7452330	0	+	0.515464	(0.485,0.523]	chr20	775551	10	EXON_LNCRNA	EXON_LNCRNA	ENSG00000287569	ENSG00000287569.1	ENST00000668826.1	lncRNA	lncRNA	lncRNA	lncRNA	5	120	2	1.94139	2.6527249999999998	3.36406	0.0989181	0.00395351	0.19381	0.0368027
chr11	65427865	65427965	4871620	0	+	0.47	(0.45,0.485]	chr11	468177	52	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	59	1489	2	2.20243	2.6526300000000003	3.10283	0.0095764	0.0063659	0.0653124	0.0528257
chr9	14790587	14790684	4279608	0	-	0.309278	(0.29,0.33]	chr9	408901	11	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7:ENST00000466679.1:ENST00000497634.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	119	2	2.59537	2.65232	2.70927	0.0394817	0.0158832	0.13291	0.0890094
chr6	157313683	157313783	3298428	0	-	0.58	(0.523,0.58]	chr6	319197	203	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	6	111	2	1.85603	2.651865	3.4477	0.0498814	0.0242383	0.161221	0.106588
chr2	32358483	32358582	747774	0	+	0.373737	(0.36,0.39]	chr2	87153	6	INTRON	INTRON	BIRC6	ENSG00000115760.15	ENST00000421745.7:ENST00000648282.1	protein_coding	protein_coding	protein_coding	protein_coding	4	95	2	2.39739	2.651515	2.90564	0.0625454	0.0273682	0.160305	0.119386
chr2	91628165	91628264	1217366	0	-	0.59596	(0.58,1]	chr2	131094	97	INTRON	INTRON	LSP1P4	ENSG00000143429.11	ENST00000692025.1:ENST00000423774.3:ENST00000609777.6:ENST00000692653.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	4	94	2	2.5203700000000002	2.651115	2.78186	0.0342923	0.0322644	0.13449	0.121593
chr2	152593143	152593243	928050	0	+	0.46	(0.45,0.485]	chr2	103106	117	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14:ENST00000492942.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	92	2	2.64564	2.6510550000000004	2.65647	0.0837071	0.0145337	0.181508	0.0836469
chr19	6679897	6679996	7322520	0	-	0.494949	(0.485,0.523]	chr19	756382	4	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000599899.5:ENST00000695690.1:ENST00000695691.1:ENST00000695689.1:ENST00000695653.1:ENST00000695654.1:ENST00000599668.1:ENST00000601008.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	121	2	1.85218	2.65105	3.44992	0.0448286	0.0240794	0.154539	0.106575
chr17	81073978	81074077	6813760	0	+	0.535354	(0.523,0.58]	chr17	688114	98	INTRON	INTRON	BAIAP2	ENSG00000175866.16	ENST00000321280.11:ENST00000576470.5:ENST00000575750.5:ENST00000428708.7:ENST00000572329.5:ENST00000575989.5:ENST00000570913.5:ENST00000575712.5:ENST00000575245.5:ENST00000321300.10:ENST00000435091.7:ENST00000573894.5:ENST00000571530.5:ENST00000572918.5:ENST00000573017.5:ENST00000575958.5:ENST00000573659.5:ENST00000572073.5:ENST00000573677.5:ENST00000574804.5:ENST00000576364.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	72	2	2.52319	2.64987	2.77655	0.0685533	0.0287266	0.165066	0.123764
chr17	15487698	15487798	6860313	0	-	0.53	(0.523,0.58]	chr17	695075	121	INTRON	INTRON	TVP23C-CDRT4:CDRT4	ENSG00000259024.6:ENSG00000239704.11	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	2.48975	2.64978	2.80981	0.101574	0.0364868	0.196431	0.139793
chr19	40090749	40090826	7379238	0	-	0.701299	(0.58,1]	chr19	765592	1	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ZNF780A	ENSG00000197782.15	ENST00000450241.6:ENST00000414720.6:ENST00000455521.5:ENST00000340963.9:ENST00000683561.1:ENST00000595687.6:ENST00000595773.5:ENST00000601688.5:ENST00000599972.1	protein_coding	protein_coding	protein_coding	protein_coding:non_stop_decay	3	64	2	2.27185	2.64968	3.02751	0.0433824	0.0385189	0.152119	0.131324
chr19	35005022	35005122	7244910	0	+	0.66	(0.58,1]	chr19	742073	18	INTRON	INTRON	GRAMD1A	ENSG00000089351.15	ENST00000599564.5:ENST00000594597.5:ENST00000317991.10:ENST00000600231.5:ENST00000680623.1:ENST00000603669.5:ENST00000411896.6:ENST00000424536.2:ENST00000598073.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	67	2	2.32207	2.6496	2.97713	0.0631758	0.0226795	0.161352	0.108193
chr17	65556808	65556908	6950830	0	-	0.48	(0.45,0.485]	chr17	709222	68	INTRON	INTRON	AXIN2	ENSG00000168646.14	ENST00000307078.10:ENST00000618960.4:ENST00000375702.5	protein_coding	protein_coding	protein_coding	protein_coding	4	91	2	2.09504	2.6494999999999997	3.20396	0.0477581	0.0377633	0.1588	0.131324
chr9	136207130	136207230	4433087	0	-	0.54	(0.523,0.58]	chr9	423667	9	UTR3	UTR3:EXON_MRNA	QSOX2	ENSG00000165661.17	ENST00000358701.10	protein_coding	protein_coding	protein_coding	protein_coding	6	112	2	2.25155	2.649185	3.04682	0.0459721	0.02087	0.142664	0.102911
chr2	101728631	101728731	860942	0	+	0.54	(0.523,0.58]	chr2	97528	297	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	3	73	2	2.34664	2.64897	2.9513	0.0531089	0.0413259	0.149478	0.148318
chr16	81492752	81492852	6508219	0	+	0.61	(0.58,1]	chr16	645906	469	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	2	51	2	2.38295	2.648705	2.91446	0.0730701	0.0464528	0.199669	0.143232
chr6	158572519	158572619	3064020	0	+	0.57	(0.523,0.58]	chr6	297687	119	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	9	182	2	1.87164	2.648335	3.42503	0.0386473	0.0120305	0.142455	0.0744167
chr13	113330378	113330478	5753234	0	-	0.61	(0.58,1]	chr13	564094	39	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	2.342	2.647565	2.95313	0.0435972	0.023878	0.139245	0.111721
chr7	27114540	27114640	3559807	0	-	0.49	(0.485,0.523]	chr7	343721	8	INTRON	INTRON	HOXA3	ENSG00000105997.23	ENST00000396352.8:ENST00000612286.5:ENST00000317201.7:ENST00000522788.5:ENST00000521401.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	72	2	2.59183	2.64715	2.70247	0.0759932	0.0250389	0.174411	0.114418
chr7	47351137	47351236	3587302	0	-	0.383838	(0.36,0.39]	chr7	346030	44	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	4	98	2	2.59031	2.64696	2.70361	0.0956255	0.0139551	0.189038	0.0825654
chr11	2688698	2688798	4972198	0	-	0.57	(0.523,0.58]	chr11	481197	805	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	12	162	2	1.55019	2.64618	3.74217	0.0612016	0.0146653	0.18013	0.0826843
chr10	79108525	79108625	4532440	0	+	0.63	(0.58,1]	chr10	432420	389	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.50987	2.6458649999999997	2.78186	0.0865901	0.0342923	0.182221	0.13449
chr10	100969761	100969842	4569819	0	+	0.753086	(0.58,1]	chr10	436223	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	SEMA4G	ENSG00000095539.15	ENST00000519649.5:ENST00000521006.5:ENST00000518124.5:ENST00000518244.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	47	2	2.50987	2.6458649999999997	2.78186	0.0865901	0.0342923	0.182221	0.13449
chr8	38381798	38381892	3967581	0	-	0.659574	(0.58,1]	chr8	379202	1	UTR5	UTR5:EXON_MRNA	NSD3	ENSG00000147548.17	ENST00000317025.13:ENST00000433384.6:ENST00000527502.5:ENST00000316985.7:ENST00000534155.1	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.0383	2.64581	3.25332	0.0978534	0.0120565	0.191981	0.0754623
chr3	188240162	188240262	1652660	0	+	0.28	[0,0.29]	chr3	173752	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	2.61776	2.64568	2.6736	0.0694089	0.0224516	0.167028	0.108193
chr2	171699470	171699570	953439	0	+	0.3	(0.29,0.33]	chr2	104789	62	INTRON	INTRON	DYNC1I2	ENSG00000077380.16	ENST00000340296.8:ENST00000452242.5:ENST00000397119.8:ENST00000410079.7:ENST00000438879.5:ENST00000508530.5:ENST00000409197.5:ENST00000456808.5:ENST00000409317.5:ENST00000409773.5:ENST00000411953.5:ENST00000409453.5:ENST00000445378.5:ENST00000435234.5:ENST00000443458.5:ENST00000412370.5:ENST00000425485.5:ENST00000423910.5:ENST00000430778.5:ENST00000422646.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	2.57172	2.64564	2.71956	0.0888658	0.0442313	0.183874	0.153511
chr7	47477105	47477205	3588579	0	-	0.51	(0.485,0.523]	chr7	346123	240	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.49197	2.645295	2.79862	0.10114	0.0375966	0.196131	0.139924
chr8	22389650	22389749	3770245	0	+	0.616162	(0.58,1]	chr8	362727	98	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	4	86	2	2.0383	2.6452150000000003	3.25213	0.0978534	0.00405239	0.191981	0.0371518
chr22	15817499	15817595	7682898	0	+	0.510417	(0.485,0.523]	chr22	803564	16	INTRON	INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000383038.7:ENST00000447898.5	lncRNA	lncRNA	lncRNA	lncRNA	3	72	2	2.51105	2.6449100000000003	2.77877	0.0682166	0.029737800000000002	0.164526	0.126591
chr2	239339989	239340089	1392110	0	-	0.52	(0.485,0.523]	chr2	148752	155	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	73	2	2.33451	2.644015	2.95352	0.0528263	0.0426546	0.149802	0.14912
chr10	100983004	100983104	4569970	0	+	0.46	(0.45,0.485]	chr10	436285	3	SS3_PROX	SS3_PROX:INTRON	SEMA4G	ENSG00000095539.15	ENST00000521006.5:ENST00000370250.8:ENST00000517724.5:ENST00000210633.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	75	2	2.37986	2.643675	2.90749	0.0588897	0.0401325	0.15607	0.144727
chr14	19095905	19096005	5754299	0	+	0.6	(0.58,1]	chr14	564239	21	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000619938.1:ENST00000644980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	10	184	2	2.40986	2.6436	2.87734	0.0164327	0.0085868	0.0877581	0.0612699
chr17	55313828	55313927	6757602	0	+	0.515152	(0.485,0.523]	chr17	681718	245	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	140	2	2.20245	2.642405	3.08236	0.0286201	0.0220012	0.12345	0.101502
chrX	133687280	133687380	8113031	0	-	0.42	(0.419,0.45]	chrX	845486	251	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000667662.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	201	2	2.35649	2.6398200000000003	2.92315	0.0352944	0.0153456	0.127188	0.0869129
chr14	19304414	19304514	5928406	0	-	0.44	(0.419,0.45]	chr14	580403	4	SS3_PROX	SS3_PROX:INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	98	2	2.11552	2.6393649999999997	3.16321	0.0495179	0.0455634	0.160725	0.142336
chr17	55312930	55313029	6757593	0	+	0.373737	(0.36,0.39]	chr17	681718	236	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	131	2	1.87132	2.638615	3.40591	0.0473363	0.0298	0.157549	0.11661
chr2	165937966	165938064	1301063	0	-	0.377551	(0.36,0.39]	chr2	139566	4	INTRON	INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000679840.1:ENST00000680448.1:ENST00000681606.1:ENST00000679671.1:ENST00000464374.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	94	2	2.30948	2.6383650000000003	2.96725	0.0573348	0.0328734	0.154343	0.132163
chr17	55295469	55295569	6757418	0	+	0.55	(0.523,0.58]	chr17	681718	61	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	166	2	2.29196	2.637025	2.98209	0.0493816	0.00592874	0.146377	0.047919
chr17	72574966	72575066	6964061	0	-	0.63	(0.58,1]	chr17	710393	2	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1	lncRNA	lncRNA	lncRNA	lncRNA	9	119	2	1.70803	2.6369	3.56577	0.0451738	0.0146864	0.154539	0.0826843
chr15	85008031	85008131	6174854	0	+	0.5	(0.485,0.523]	chr15	607383	253	INTRON	INTRON	PDE8A	ENSG00000073417.15	ENST00000310298.8:ENST00000557957.5:ENST00000394553.6:ENST00000339708.9:ENST00000478717.5:ENST00000485596.5:ENST00000559742.5:ENST00000559086.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	54	2	2.5366	2.6365499999999997	2.7365	0.0953348	0.0423471	0.189038	0.149195
chr10	75725848	75725948	4523422	0	+	0.37	(0.36,0.39]	chr10	432271	779	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	129	2	2.41674	2.63647	2.8562	0.0708699	0.00978717	0.168159	0.0664239
chr6	2162931	2163031	3084511	0	-	0.41	(0.39,0.419]	chr6	299521	378	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5	protein_coding	protein_coding	protein_coding	protein_coding	10	235	2	2.54733	2.63604	2.72475	0.03375	0.00932082	0.124319	0.0644593
chr13	97362835	97362935	5632219	0	+	0.51	(0.485,0.523]	chr13	553214	48	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000449284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	165	2	2.62616	2.635745	2.64533	0.0331525	0.0105979	0.123392	0.069518
chr16	52543739	52543839	6589827	0	-	0.39	(0.36,0.39]	chr16	658709	238	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	375	2	2.50687	2.63566	2.76445	0.0209331	0.00864987	0.0994324	0.0612699
chr19	955685	955785	7185403	0	+	0.63	(0.58,1]	chr19	730741	226	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	94	2	1.92068	2.635595	3.35051	0.074686	0.00953058	0.172361	0.0650078
chr3	58116387	58116486	1484144	0	+	0.626263	(0.58,1]	chr3	159674	37	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000493452.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	95	2	2.55843	2.6344250000000002	2.71042	0.0396128	0.0300956	0.143388	0.117601
chr11	70775559	70775659	5062037	0	-	0.59	(0.58,1]	chr11	492701	577	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	67	2	2.35391	2.63442	2.91493	0.0600041	0.0259506	0.158506	0.116361
chr2	152336719	152336819	925478	0	+	0.49	(0.485,0.523]	chr2	103058	6	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	8	129	2	1.81728	2.6336	3.44992	0.0438807	0.0240794	0.153511	0.106575
chr2	108591009	108591108	871520	0	+	0.50505	(0.485,0.523]	chr2	98298	20	INTRON	INTRON	LIMS1	ENSG00000169756.17	ENST00000695516.1:ENST00000544547.6:ENST00000695517.1:ENST00000695518.1:ENST00000695519.1:ENST00000332345.10:ENST00000695520.1:ENST00000393310.5:ENST00000695521.1	protein_coding	protein_coding	protein_coding	protein_coding	2	55	2	2.60361	2.633185	2.66276	0.0803133	0.0541523	0.177452	0.167824
chr2	11589431	11589528	720777	0	+	0.608247	(0.58,1]	chr2	84163	1	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000381483.6:ENST00000234142.9:ENST00000432985.1	protein_coding	protein_coding	protein_coding	protein_coding	7	104	2	1.64939	2.63212	3.61485	0.0612415	0.0133763	0.18013	0.0790342
chr9	14838852	14838951	4280103	0	-	0.50505	(0.485,0.523]	chr9	408973	135	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	86	2	2.21468	2.63186	3.04904	0.0457169	0.0363164	0.142336	0.139793
chr1	91752301	91752401	526472	0	-	0.45	(0.419,0.45]	chr1	61884	170	INTRON	INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000468996.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	98	2	2.57416	2.630255	2.68635	0.0876314	0.0193238	0.183437	0.0994526
chr17	7177902	7177993	6847855	0	-	0.549451	(0.523,0.58]	chr17	693467	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574388.5:ENST00000573596.1:ENST00000573083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	231	2	1.77001	2.6299900000000003	3.48997	0.0830817	0.00149918	0.180384	0.0188303
chr10	34676137	34676234	4670416	0	-	0.340206	(0.33,0.36]	chr10	445531	2	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000696673.1:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	3	75	2	2.53891	2.629885	2.72086	0.0773451	0.0300873	0.175203	0.126768
chr11	68332671	68332771	4882284	0	+	0.6	(0.58,1]	chr11	470542	195	INTRON	INTRON	LRP5	ENSG00000162337.12	ENST00000294304.12:ENST00000529993.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	50	2	2.38295	2.6288299999999998	2.87471	0.0730701	0.0495478	0.199669	0.146562
chr20	8452847	8452947	7429796	0	+	0.43	(0.419,0.45]	chr20	773698	808	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	137	2	2.30725	2.62849	2.94973	0.0667568	0.0133526	0.16272	0.0801101
chr12	50478328	50478426	5229438	0	+	0.234694	[0,0.29]	chr12	507700	26	UTR3	UTR3:EXON_MRNA	LARP4	ENSG00000161813.23	ENST00000293618.12:ENST00000398473.7	protein_coding	protein_coding	protein_coding	protein_coding	4	89	2	2.18975	2.627655	3.06556	0.0794391	0.00777136	0.176604	0.057094
chr11	65435953	65436053	4871701	0	+	0.55	(0.523,0.58]	chr11	468177	133	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	59	1598	2	1.87792	2.627265	3.37661	0.0203705	0.00327856	0.102568	0.0367219
chr10	75710557	75710657	4523269	0	+	0.54	(0.523,0.58]	chr10	432271	626	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	86	2	2.51524	2.62707	2.7389	0.072318	0.0185628	0.168347	0.0971472
chr7	105000916	105001016	3665042	0	-	0.63	(0.58,1]	chr7	353617	171	INTRON	INTRON	LINC01004	ENSG00000228393.5	ENST00000450686.1:ENST00000655204.2:ENST00000445184.1	lncRNA	lncRNA	lncRNA	lncRNA	3	64	2	2.15496	2.6266	3.09824	0.0548868	0.0341637	0.168717	0.125129
chr21	44865570	44865651	7678496	0	-	0.518519	(0.485,0.523]	chr21	802771	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000474737.5:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	129	2	2.58382	2.626075	2.66833	0.0367334	0.0211923	0.129052	0.104042
chr11	57499677	57499762	5038769	0	-	0.764706	(0.58,1]	chr11	488207	1	INTRON	INTRON	SLC43A1	ENSG00000149150.9	ENST00000278426.8:ENST00000528450.5:ENST00000525764.5:ENST00000530159.5:ENST00000533066.5:ENST00000524995.5:ENST00000534105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.40217	2.62605	2.84993	0.100879	0.0297842	0.196131	0.126591
chr6	158040829	158040929	3059906	0	+	0.64	(0.58,1]	chr6	297390	68	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.40217	2.62605	2.84993	0.100879	0.0297842	0.196131	0.126591
chr6	1923604	1923704	3082109	0	-	0.63	(0.58,1]	chr6	299482	1807	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	87	2	2.45956	2.6256700000000004	2.79178	0.0565563	0.0130665	0.154343	0.078517
chr2	11303724	11303824	1088992	0	-	0.41	(0.39,0.419]	chr2	118747	156	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	94	2	2.451	2.625655	2.80031	0.0728013	0.0244655	0.169397	0.113552
chr11	65426068	65426168	4871602	0	+	0.38	(0.36,0.39]	chr11	468177	34	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000693290.1:ENST00000616315.2	lncRNA	lncRNA	lncRNA	lncRNA	51	1367	2	2.33332	2.62441	2.9155	0.0105291	0.00836173	0.0693038	0.0599598
chrX	109644586	109644686	8090554	0	-	0.5	(0.485,0.523]	chrX	843618	4	SS3_PROX	SS3_PROX:INTRON	ACSL4	ENSG00000068366.21	ENST00000505075.1:ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000683559.1:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000514500.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	87	2	2.02572	2.624345	3.22297	0.0532895	0.0348463	0.167062	0.126697
chr11	117809588	117809688	5134979	0	-	0.61	(0.58,1]	chr11	498595	72	INTRON	INTRON	FXYD2	ENSG00000137731.14	ENST00000514385.1:ENST00000532119.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	74	2	2.18459	2.62395	3.06331	0.036259	0.0341377	0.134338	0.127941
chrX	153643504	153643603	7960797	0	+	0.646465	(0.58,1]	chrX	833164	5	INTRON	INTRON	DUSP9	ENSG00000130829.18	ENST00000477033.1:ENST00000370167.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	196	2	2.342	2.62373	2.90546	0.023878	0.0102869	0.111721	0.0684871
chr19	40232587	40232686	7379265	0	-	0.646465	(0.58,1]	chr19	765595	24	UTR3	UTR3:EXON_MRNA	AKT2	ENSG00000105221.18	ENST00000392038.7:ENST00000424901.5:ENST00000483166.5:ENST00000476266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	221	2	2.55652	2.62342	2.69032	0.0159294	0.00661024	0.0861432	0.0512951
chr2	134451236	134451335	898760	0	+	0.535354	(0.523,0.58]	chr2	101298	25	UTR3	UTR3:EXON_MRNA	MGAT5	ENSG00000152127.9	ENST00000409645.5:ENST00000281923.4	protein_coding	protein_coding	protein_coding	protein_coding	8	136	2	2.26237	2.62311	2.98385	0.0505794	0.0155803	0.148456	0.0876334
chr2	237584116	237584215	1388087	0	-	0.59596	(0.58,1]	chr2	148327	47	INTRON	INTRON	RAB17	ENSG00000124839.13	ENST00000392001.6:ENST00000264601.8:ENST00000409576.1:ENST00000414278.1:ENST00000409822.1:ENST00000411462.5:ENST00000430445.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	199	2	2.30423	2.62279	2.94135	0.0260615	0.00954962	0.116811	0.0658012
chr8	86416232	86416331	3853859	0	+	0.414141	(0.39,0.419]	chr8	369757	40	INTRON	INTRON	WWP1	ENSG00000123124.14	ENST00000517970.6:ENST00000265428.4:ENST00000518683.5:ENST00000520374.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	60	2	2.54977	2.6226700000000003	2.69557	0.0837871	0.0640389	0.184676	0.181557
chr7	73602990	73603090	3602887	0	-	0.67	(0.58,1]	chr7	347634	29	INTRON	INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1:ENST00000488212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	15	296	2	2.59064	2.62179	2.65294	0.0158432	0.00383497	0.0859576	0.0358792
chr14	19095806	19095905	5754298	0	+	0.606061	(0.58,1]	chr14	564239	20	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000619938.1:ENST00000644980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	21	406	2	2.23176	2.6213800000000003	3.011	0.0248956	0.00129776	0.10758	0.0170904
chr21	45474876	45474975	7631015	0	+	0.636364	(0.58,1]	chr21	797674	5	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	8	155	2	2.50765	2.62133	2.73501	0.0216297	0.00908312	0.100615	0.0630387
chr18	58046745	58046841	7071467	0	+	0.385417	(0.36,0.39]	chr18	721084	5	EXON_LNCRNA	EXON_LNCRNA:INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5:ENST00000588516.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	237	2	2.50782	2.620575	2.73333	0.0350958	0.00963004	0.127163	0.0656623
chr16	89428657	89428757	6661120	0	-	0.5	(0.485,0.523]	chr16	666747	99	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	72	2	2.28678	2.6201499999999998	2.95352	0.0528263	0.046853	0.156896	0.14912
chr2	38365869	38365968	1124225	0	-	0.494949	(0.485,0.523]	chr2	123043	64	INTRON	INTRON	ATL2	ENSG00000119787.14	ENST00000378954.9:ENST00000406122.5:ENST00000405384.6:ENST00000402054.5:ENST00000419554.6:ENST00000651368.1:ENST00000452935.6:ENST00000449130.5:ENST00000443098.5:ENST00000456736.5:ENST00000472097.1:ENST00000451483.1:ENST00000416222.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	72	2	2.28678	2.6201499999999998	2.95352	0.0528263	0.046853	0.156896	0.14912
chr6	2026241	2026341	3083141	0	-	0.46	(0.45,0.485]	chr6	299499	649	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000530459.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	146	2	2.27643	2.62013	2.96383	0.0627043	0.00672691	0.160571	0.0519464
chr12	2959981	2960074	5157683	0	+	0.655914	(0.58,1]	chr12	501255	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	TEAD4	ENSG00000197905.10	ENST00000358409.7:ENST00000359864.8:ENST00000540314.2:ENST00000536826.2:ENST00000543035.6:ENST00000397122.6:ENST00000443986.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	46	2	2.45703	2.619445	2.78186	0.0933945	0.0342923	0.188571	0.13449
chr19	1416255	1416351	7187511	0	+	0.635417	(0.58,1]	chr19	731289	4	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5:ENST00000587833.5:ENST00000589484.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	115	2	2.40582	2.61896	2.8321	0.0262282	0.0149737	0.110287	0.0851167
chr19	49104157	49104252	7281148	0	+	0.652632	(0.58,1]	chr19	748270	7	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SNRNP70	ENSG00000104852.15	ENST00000601065.5:ENST00000598441.6:ENST00000401730.5:ENST00000221448.9:ENST00000595231.5:ENST00000544278.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	128	2	2.23506	2.6187899999999997	3.00252	0.0190891	0.0183791	0.096291	0.0952138
chr14	54574409	54574509	5819517	0	+	0.5	(0.485,0.523]	chr14	569049	59	INTRON	INTRON	SAMD4A	ENSG00000020577.14	ENST00000554335.6:ENST00000392067.7:ENST00000631086.2:ENST00000251091.9:ENST00000555112.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	193	2	2.60562	2.61849	2.63136	0.027924	0.011149	0.113447	0.071709
chr19	5975500	5975595	7318971	0	-	0.431579	(0.419,0.45]	chr19	755877	7	INTRON	INTRON	RANBP3	ENSG00000031823.14	ENST00000340578.10:ENST00000439268.6:ENST00000592771.5:ENST00000591092.5:ENST00000034275.12:ENST00000587479.2:ENST00000592621.5:ENST00000590623.5:ENST00000591736.5:ENST00000590953.5:ENST00000588879.5:ENST00000587159.5:ENST00000586117.5:ENST00000589353.5:ENST00000587463.5:ENST00000588010.5:ENST00000591124.5:ENST00000585339.5:ENST00000592133.5:ENST00000591881.5:ENST00000589886.5:ENST00000587263.5:ENST00000587956.5:ENST00000591333.5:ENST00000592266.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	110	2	2.43029	2.6181799999999997	2.80607	0.0726601	0.0182888	0.169126	0.0958973
chr3	197519149	197519249	1991579	0	-	0.51	(0.485,0.523]	chr3	202753	34	INTRON	INTRON	BDH1	ENSG00000161267.12	ENST00000358186.6:ENST00000392378.6:ENST00000392379.6:ENST00000651856.1:ENST00000441275.5:ENST00000479425.5:ENST00000446746.5:ENST00000477015.5:ENST00000434143.5:ENST00000432819.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	56	2	2.45723	2.6180000000000003	2.77877	0.0700289	0.0682166	0.195209	0.164526
chr21	44859262	44859362	7678427	0	-	0.51	(0.485,0.523]	chr21	802754	25	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000397886.3:ENST00000474737.5:ENST00000494690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	173	2	2.06555	2.617615	3.16968	0.0492547	0.0132082	0.160725	0.0786091
chr16	8639676	8639776	6381016	0	+	0.64	(0.58,1]	chr16	631101	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	METTL22	ENSG00000067365.15	ENST00000163678.11:ENST00000381920.8:ENST00000561758.5:ENST00000568967.5:ENST00000572956.5:ENST00000561993.5:ENST00000563501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	67	2	2.38507	2.6174999999999997	2.84993	0.057029	0.0297842	0.154343	0.126591
chr11	70801835	70801934	5062301	0	-	0.555556	(0.523,0.58]	chr11	492707	29	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5:ENST00000460048.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	54	2	2.61478	2.61724	2.6197	0.0853454	0.052707	0.181766	0.167062
chr11	65431859	65431959	4871660	0	+	0.26	[0,0.29]	chr11	468177	92	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2:ENST00000687943.1	lncRNA	lncRNA	lncRNA	lncRNA	27	649	2	2.33044	2.616315	2.90219	0.00903343	0.00616058	0.0627016	0.0519096
chr11	57304362	57304460	5038260	0	-	0.622449	(0.58,1]	chr11	488042	10	INTRON	INTRON	TNKS1BP1	ENSG00000149115.14	ENST00000528882.5:ENST00000358252.8:ENST00000532437.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	61	2	2.52834	2.61607	2.7038	0.0648563	0.0249502	0.162218	0.114418
chr11	65424969	65425069	4871591	0	+	0.55	(0.523,0.58]	chr11	468177	23	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1	lncRNA	lncRNA	lncRNA	lncRNA	116	2710	2	2.5269	2.61606	2.70522	0.0111138	0.00319816	0.0714125	0.0317878
chr16	89296876	89296976	6659774	0	-	0.56	(0.523,0.58]	chr16	666648	47	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	97	2	2.21516	2.615415	3.01567	0.0482042	0.02755	0.144601	0.120136
chr3	172091181	172091281	1627979	0	+	0.34	(0.33,0.36]	chr3	170535	439	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	170	2	2.4064	2.61537	2.82434	0.0519632	0.00731137	0.148503	0.0550721
chr1	30935042	30935142	434624	0	-	0.53	(0.523,0.58]	chr1	51446	13	INTRON	INTRON	PUM1	ENSG00000134644.16	ENST00000426105.7:ENST00000373747.7:ENST00000257075.9:ENST00000424085.6:ENST00000525843.5:ENST00000440538.6:ENST00000498419.5:ENST00000373741.8:ENST00000373742.6:ENST00000530669.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	71	2	2.34664	2.61528	2.88392	0.0586821	0.0413259	0.155604	0.148318
chr21	14962328	14962427	7639979	0	-	0.323232	(0.29,0.33]	chr21	799090	12	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000235609:NRIP1	ENSG00000235609.7:ENSG00000180530.11	ENST00000432230.6:ENST00000400202.5:ENST00000318948.7:ENST00000400199.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	70	2	2.57345	2.6152499999999996	2.65705	0.0789527	0.026427	0.175712	0.118113
chr15	67077785	67077885	6139194	0	+	0.54	(0.523,0.58]	chr15	603934	95	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1	protein_coding	protein_coding	protein_coding	protein_coding	5	127	2	2.54963	2.615055	2.68048	0.0389647	0.020416	0.13152	0.102668
chrX	120436296	120436394	8096603	0	-	0.397959	(0.39,0.419]	chrX	844120	45	INTRON	INTRON	LAMP2	ENSG00000005893.16	ENST00000200639.9:ENST00000434600.6:ENST00000486593.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	77	2	2.49838	2.61486	2.73134	0.0798958	0.0336993	0.177037	0.133139
chr13	50559520	50559620	5598220	0	+	0.49	(0.485,0.523]	chr13	551685	258	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000470726.7:ENST00000479420.5:ENST00000647700.1:ENST00000484869.6	lncRNA	lncRNA	lncRNA	lncRNA	2	53	2	2.49197	2.614235	2.7365	0.10114	0.0423471	0.196131	0.149195
chr6	48003733	48003833	3145985	0	-	0.42	(0.419,0.45]	chr6	306778	1014	INTRON	INTRON	PTCHD4	ENSG00000244694.8	ENST00000339488.9:ENST00000398738.3:ENST00000679966.1	protein_coding	protein_coding	protein_coding	protein_coding	2	60	2	2.5763	2.61203	2.64776	0.100818	0.0551054	0.196131	0.169163
chr8	8350010	8350110	3934106	0	-	0.31	(0.29,0.33]	chr8	376133	100	INTRON	INTRON	PRAG1	ENSG00000275342.5	ENST00000615670.5:ENST00000622241.1	protein_coding	protein_coding	protein_coding	protein_coding	6	132	2	2.41055	2.61196	2.81337	0.0332423	0.0181469	0.12369	0.0955836
chr20	47282981	47283070	7570147	0	-	0.494382	(0.485,0.523]	chr20	791036	4	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	72	2	2.23742	2.611745	2.98607	0.0515447	0.0503063	0.165949	0.148176
chr17	55414831	55414930	6930481	0	-	0.363636	(0.36,0.39]	chr17	706230	2	INTRON	INTRON	MMD	ENSG00000108960.9	ENST00000262065.8:ENST00000649377.1:ENST00000571578.1	protein_coding	protein_coding	protein_coding	protein_coding	5	107	2	2.31684	2.61124	2.90564	0.0625454	0.0249685	0.160305	0.114418
chr19	34390695	34390795	7243257	0	+	0.52	(0.485,0.523]	chr19	741718	87	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	134	2	1.94261	2.61101	3.27941	0.062577	0.0155752	0.181719	0.0849828
chr3	12965201	12965300	1688781	0	-	0.515152	(0.485,0.523]	chr3	176520	42	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000646269.1:ENST00000273221.8:ENST00000618604.4:ENST00000648114.1:ENST00000648386.1:ENST00000647458.1:ENST00000473088.1:ENST00000474467.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	71	2	2.33451	2.610325	2.88614	0.0583792	0.0426546	0.155373	0.149802
chr5	139650988	139651077	2549670	0	+	0.595506	(0.58,1]	chr5	253165	1	UTR5	UTR5:EXON_MRNA:INTRON	CXXC5	ENSG00000171604.12	ENST00000502295.1:ENST00000504944.1:ENST00000302517.8:ENST00000507139.5:ENST00000504844.1:ENST00000502336.5:ENST00000520967.1:ENST00000511048.1:ENST00000512816.1	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.50987	2.610145	2.71042	0.0865901	0.0396128	0.182221	0.143388
chr10	103692227	103692327	4757018	0	-	0.65	(0.58,1]	chr10	454779	142	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	79	2	2.01789	2.61002	3.20215	0.0762182	0.0136092	0.174484	0.0811697
chr12	2986940	2987040	5157953	0	+	0.48	(0.45,0.485]	chr12	501258	262	INTRON	INTRON	TEAD4	ENSG00000197905.10	ENST00000358409.7:ENST00000359864.8:ENST00000540314.2:ENST00000536826.2:ENST00000543035.6:ENST00000397122.6:ENST00000443986.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	90	2	1.9378	2.609995	3.28219	0.0646604	0.0334207	0.185606	0.12421
chr3	172050542	172050642	1627572	0	+	0.48	(0.45,0.485]	chr3	170535	32	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	192	2	2.23522	2.6096500000000002	2.98408	0.0503492	0.00639315	0.148216	0.05026
chr4	770200	770300	2177948	0	-	0.57	(0.523,0.58]	chr4	220526	22	INTRON	INTRON	ENSG00000249592	ENSG00000249592.7	ENST00000660016.1:ENST00000665579.1:ENST00000503571.5:ENST00000652800.1:ENST00000507446.1	lncRNA	lncRNA	lncRNA	lncRNA	2	53	2	2.53438	2.6085700000000003	2.68276	0.0957531	0.0464998	0.189038	0.156036
chr6	144293704	144293803	3019944	0	+	0.30303	(0.29,0.33]	chr6	295138	14	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1	protein_coding	protein_coding	protein_coding	protein_coding	4	84	2	2.19575	2.6084899999999998	3.02123	0.0461219	0.0382595	0.143055	0.141103
chrX	153643111	153643209	7960793	0	+	0.642857	(0.58,1]	chrX	833164	1	INTRON	INTRON	DUSP9	ENSG00000130829.18	ENST00000477033.1:ENST00000370167.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	49	2	2.38295	2.608395	2.83384	0.0730701	0.0529065	0.199669	0.14912
chr6	158245792	158245892	3060973	0	+	0.46	(0.45,0.485]	chr6	297572	131	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	8	131	2	1.63674	2.6080550000000002	3.57937	0.0656381	0.0206537	0.188255	0.0984724
chr10	112194947	112195047	4760736	0	-	0.48	(0.45,0.485]	chr10	455255	113	INTRON	INTRON	GPAM	ENSG00000119927.14	ENST00000480130.5:ENST00000498541.1	protein_coding	processed_transcript	protein_coding	processed_transcript	7	159	2	2.38898	2.60791	2.82684	0.0698506	0.00539045	0.167349	0.0450882
chr2	235516230	235516330	1062758	0	+	0.47	(0.45,0.485]	chr2	115651	210	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	126	2	2.38491	2.6076699999999997	2.83043	0.0530938	0.0153861	0.149478	0.0869771
chrX	133937051	133937151	8115538	0	-	0.4	(0.39,0.419]	chrX	845529	1021	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	22	491	2	2.6023	2.60704	2.61178	0.0274016	0.00501338	0.112509	0.0429251
chr12	26784256	26784356	5401112	0	-	0.67	(0.58,1]	chr12	528735	581	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000545235.1:ENST00000242737.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.55596	2.60683	2.6577	0.0695799	0.0534085	0.167062	0.167028
chr17	17836126	17836226	6865885	0	-	0.63	(0.58,1]	chr17	695923	122	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.55596	2.60683	2.6577	0.0695799	0.0534085	0.167062	0.167028
chr2	39107440	39107540	1127228	0	-	0.43	(0.419,0.45]	chr2	123480	91	INTRON	INTRON	SOS1	ENSG00000115904.15	ENST00000692089.1:ENST00000402219.8:ENST00000690876.1:ENST00000395038.6:ENST00000691229.1:ENST00000689668.1:ENST00000690679.1:ENST00000461545.2:ENST00000451331.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	109	2	2.40752	2.606795	2.80607	0.074989	0.0182888	0.172839	0.0958973
chr2	165940329	165940427	1301087	0	-	0.479592	(0.45,0.485]	chr2	139566	28	INTRON	INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000679840.1:ENST00000680448.1:ENST00000681606.1:ENST00000679671.1:ENST00000464374.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	74	2	2.24119	2.606525	2.97186	0.0536124	0.0525018	0.167062	0.150486
chr9	129494095	129494194	4250715	0	+	0.626263	(0.58,1]	chr9	404714	1	INTRON	INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	73	2	2.37881	2.606325	2.83384	0.0529065	0.0219036	0.14912	0.106977
chr8	127203917	127204016	4067046	0	-	0.353535	(0.33,0.36]	chr8	387456	3	INTRON	INTRON	CASC19	ENSG00000254166.3	ENST00000641912.1:ENST00000641991.1:ENST00000641425.1:ENST00000641496.1:ENST00000641013.1:ENST00000641174.1:ENST00000641487.1:ENST00000641321.1:ENST00000641719.1:ENST00000642010.1:ENST00000641056.1:ENST00000641642.1:ENST00000641362.1:ENST00000641365.1:ENST00000642077.1:ENST00000641179.1:ENST00000642126.1:ENST00000641411.1:ENST00000641298.1:ENST00000641001.1:ENST00000641674.2:ENST00000641828.1:ENST00000641029.1:ENST00000641547.1:ENST00000642134.1:ENST00000641696.1:ENST00000641480.1:ENST00000641187.1:ENST00000641934.1:ENST00000641681.1:ENST00000641867.1:ENST00000641418.1:ENST00000641414.2:ENST00000641733.1:ENST00000642142.1:ENST00000641964.1:ENST00000641880.1:ENST00000641171.1:ENST00000641625.1:ENST00000642118.2:ENST00000642018.2:ENST00000641309.2:ENST00000641704.2:ENST00000641106.2:ENST00000663628.1:ENST00000641153.2:ENST00000641218.2:ENST00000641488.2:ENST00000641786.1:ENST00000641523.2:ENST00000641060.1	lncRNA	lncRNA	lncRNA	lncRNA	6	148	2	2.18671	2.60626	3.02581	0.0938202	0.00438897	0.188571	0.0393688
chr11	64766510	64766607	5049532	0	-	0.608247	(0.58,1]	chr11	490376	2	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SF1	ENSG00000168066.21	ENST00000334944.9:ENST00000227503.13:ENST00000377394.7:ENST00000448404.5:ENST00000377390.8:ENST00000377387.5:ENST00000681407.1:ENST00000443908.5:ENST00000413725.5:ENST00000433274.6:ENST00000486867.1:ENST00000477596.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	83	2	2.38507	2.604875	2.82468	0.057029	0.0123866	0.154343	0.0765738
chr19	947905	948005	7185325	0	+	0.66	(0.58,1]	chr19	730741	148	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	83	2	2.38507	2.604875	2.82468	0.057029	0.0123866	0.154343	0.0765738
chr11	65425469	65425568	4871596	0	+	0.454545	(0.45,0.485]	chr11	468177	28	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000693290.1:ENST00000616315.2	lncRNA	lncRNA	lncRNA	lncRNA	76	1737	2	2.23901	2.604825	2.97064	0.00818309	0.00799118	0.0596848	0.0590977
chr6	158562729	158562829	3063922	0	+	0.38	(0.36,0.39]	chr6	297687	21	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	4	106	2	2.46341	2.604655	2.7459	0.066299	0.0201393	0.162385	0.101501
chr2	240626262	240626360	1075206	0	+	0.663265	(0.58,1]	chr2	116658	3	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2:ENST00000407714.2	protein_coding	protein_coding	protein_coding	protein_coding	9	181	2	2.31549	2.604265	2.89304	0.0295458	0.00592504	0.116079	0.047896
chr10	75525275	75525375	4521411	0	+	0.51	(0.485,0.523]	chr10	432249	737	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.5366	2.604095	2.67159	0.0953348	0.0478226	0.189038	0.1588
chr22	20492350	20492449	7766924	0	-	0.535354	(0.523,0.58]	chr22	814363	4	INTRON	INTRON	KLHL22	ENSG00000099910.17	ENST00000328879.9:ENST00000479601.5:ENST00000451553.1:ENST00000444967.5:ENST00000458248.5:ENST00000443285.5:ENST00000494929.5:ENST00000431430.1:ENST00000470335.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	96	2	2.3839	2.603095	2.82229	0.0679164	0.014802	0.164413	0.0847481
chr2	46303530	46303630	784703	0	+	0.48	(0.45,0.485]	chr2	89746	52	INTRON	INTRON	EPAS1	ENSG00000116016.14	ENST00000460015.1:ENST00000449347.5:ENST00000263734.5:ENST00000467888.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	55	2	2.57593	2.60274	2.62955	0.093234	0.0530416	0.188571	0.167062
chr9	133887399	133887499	4429274	0	-	0.6	(0.58,1]	chr9	423310	256	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	62	2	2.21459	2.6026949999999998	2.9908	0.0487458	0.0409591	0.160725	0.136191
chr2	27584714	27584813	735474	0	+	0.414141	(0.39,0.419]	chr2	86212	6	INTRON	INTRON	ZNF512	ENSG00000243943.10	ENST00000413371.6:ENST00000416005.6:ENST00000556601.5:ENST00000379717.5:ENST00000355467.6:ENST00000494548.1:ENST00000461705.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	79	2	2.15477	2.6010400000000002	3.04731	0.0645366	0.0514906	0.185295	0.148503
chr6	144347100	144347200	3020481	0	+	0.5	(0.485,0.523]	chr6	295148	24	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1:ENST00000628146.2:ENST00000421035.2	protein_coding	protein_coding	protein_coding	protein_coding	3	73	2	2.12759	2.601035	3.07448	0.0979672	0.0214987	0.192171	0.10537
chr19	34383097	34383197	7243181	0	+	0.66	(0.58,1]	chr19	741718	11	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	144	2	2.43115	2.60089	2.77063	0.0309513	0.0159608	0.127822	0.0862974
chr6	137868929	137869028	3010376	0	+	0.292929	(0.29,0.33]	chr6	294494	8	INTRON	INTRON	TNFAIP3	ENSG00000118503.16	ENST00000421450.1:ENST00000612899.5:ENST00000420009.5:ENST00000237289.8:ENST00000433680.1	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.58669	2.600855	2.61502	0.083721	0.0563947	0.181508	0.171933
chr17	38743799	38743897	6895613	0	-	0.581633	(0.58,1]	chr17	700401	30	INTRON	INTRON	PCGF2	ENSG00000277258.5	ENST00000616199.4:ENST00000620225.5:ENST00000611883.4:ENST00000616129.4:ENST00000618941.4:ENST00000618506.1	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	2.32693	2.6008199999999997	2.87471	0.0495478	0.038688	0.146562	0.142489
chr1	45096431	45096531	463481	0	-	0.47	(0.45,0.485]	chr1	55667	78	INTRON	INTRON	ZSWIM5	ENSG00000162415.7	ENST00000359600.6:ENST00000464588.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	151	2	2.36947	2.5999499999999998	2.83043	0.0456736	0.0153861	0.142336	0.0869771
chr2	42190231	42190331	773249	0	+	0.51	(0.485,0.523]	chr2	88922	202	INTRON	INTRON	EML4	ENSG00000143924.19	ENST00000318522.10:ENST00000402711.6:ENST00000409040.1:ENST00000482660.1:ENST00000401738.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	171	2	2.25616	2.599825	2.94349	0.0253936	0.0198331	0.115502	0.096302
chr1	42177925	42178024	454949	0	-	0.313131	(0.29,0.33]	chr1	54686	15	UTR3	UTR3:EXON_MRNA	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000372571.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	2.11496	2.5995850000000003	3.08421	0.0654138	0.0418118	0.187657	0.136752
chr11	65423871	65423971	4871580	0	+	0.5	(0.485,0.523]	chr11	468177	12	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000612303.2:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000642367.1	lncRNA	lncRNA	lncRNA	lncRNA	255	5818	2	2.1713	2.599245	3.02719	0.00803749	0.0056774700000000004	0.0582806	0.0496503
chr6	48066755	48066855	3146616	0	-	0.37	(0.36,0.39]	chr6	306784	573	INTRON	INTRON	PTCHD4	ENSG00000244694.8	ENST00000339488.9:ENST00000398738.3:ENST00000679966.1	protein_coding	protein_coding	protein_coding	protein_coding	5	111	2	2.56931	2.59913	2.62895	0.0909522	0.0141724	0.187477	0.0833845
chr14	39272370	39272469	5792225	0	+	0.40404	(0.39,0.419]	chr14	567494	45	INTRON	INTRON	MIA2	ENSG00000150527.18	ENST00000553728.1:ENST00000640607.2:ENST00000554392.5:ENST00000555716.5:ENST00000341749.7:ENST00000557038.5:ENST00000396165.8:ENST00000556990.1:ENST00000396158.6:ENST00000280083.7:ENST00000341502.9:ENST00000556148.5:ENST00000348007.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	194	2	2.48879	2.59808	2.70737	0.0466115	0.0107518	0.143232	0.0702857
chr7	5381207	5381306	3535876	0	-	0.656566	(0.58,1]	chr7	341475	28	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6:ENST00000413081.1	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.56085	2.5980499999999997	2.63525	0.0803939	0.0459151	0.177452	0.154743
chr9	129611566	129611665	4250946	0	+	0.616162	(0.58,1]	chr9	404743	20	INTRON	INTRON	NTMT1	ENSG00000148335.15	ENST00000372486.5	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.56085	2.5980499999999997	2.63525	0.0803939	0.0459151	0.177452	0.154743
chrX	133748589	133748689	8113651	0	-	0.25	[0,0.29]	chrX	845516	440	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000684880.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	77	2	2.35161	2.5980499999999997	2.84449	0.0533362	0.0257197	0.150089	0.116361
chr2	54560186	54560286	799316	0	+	0.62	(0.58,1]	chr2	90800	9	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7:ENST00000333896.5	protein_coding	protein_coding	protein_coding	protein_coding	5	83	2	1.99714	2.5976850000000002	3.19823	0.0393327	0.0287301	0.143336	0.115888
chrX	109686340	109686439	8090994	0	-	0.252525	[0,0.29]	chrX	843698	5	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000505855.1:ENST00000508092.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	88	2	1.93369	2.597585	3.26148	0.0485996	0.0266041	0.160659	0.111446
chr17	57451238	57451338	6761724	0	+	0.52	(0.485,0.523]	chr17	682137	61	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000442934.6:ENST00000579180.2:ENST00000579205.5:ENST00000579505.5:ENST00000582772.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	85	2	2.53144	2.5971	2.66276	0.0803133	0.0180879	0.177452	0.0954351
chr12	120689222	120689321	5340480	0	+	0.464646	(0.45,0.485]	chr12	521449	13	INTRON	INTRON	MLEC	ENSG00000110917.8	ENST00000228506.8:ENST00000412616.2	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	2.53391	2.5966750000000003	2.65944	0.0985287	0.022472	0.193064	0.108193
chr13	112694041	112694141	5652580	0	+	0.52	(0.485,0.523]	chr13	554894	32	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5	protein_coding	protein_coding	protein_coding	protein_coding	5	96	2	2.17483	2.596365	3.0179	0.0479403	0.0304133	0.144601	0.126768
chr7	66655225	66655324	3381956	0	+	0.59596	(0.58,1]	chr7	326325	2	INTRON	INTRON	ENSG00000226824	ENSG00000226824.8	ENST00000693151.1:ENST00000656515.2:ENST00000448096.1:ENST00000439360.5:ENST00000657342.1:ENST00000428557.1	lncRNA	lncRNA	lncRNA	lncRNA	4	83	2	1.99855	2.596305	3.19406	0.103709	0.00474968	0.197611	0.0413976
chr22	15817977	15818073	7682903	0	+	0.572917	(0.523,0.58]	chr22	803564	21	INTRON	INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000383038.7:ENST00000447898.5	lncRNA	lncRNA	lncRNA	lncRNA	8	177	2	1.89157	2.59627	3.30097	0.0824599	0.0025374	0.179396	0.0271846
chr19	6719595	6719687	7322982	0	-	0.619565	(0.58,1]	chr19	756565	2	SS3_PROX	SS3_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695652.1:ENST00000594936.2:ENST00000695693.1:ENST00000600744.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	113	2	2.55909	2.59619	2.63329	0.0425829	0.00829614	0.13762	0.0597702
chr11	65423571	65423671	4871577	0	+	0.52	(0.485,0.523]	chr11	468177	9	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000612303.2:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000642367.1	lncRNA	lncRNA	lncRNA	lncRNA	105	2438	2	2.40213	2.5958	2.78947	0.0095248	0.0047082	0.0658012	0.0413976
chr2	222870654	222870753	1037798	0	+	0.434343	(0.419,0.45]	chr2	113181	47	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	79	2	2.30548	2.59478	2.88408	0.0674152	0.04996	0.163486	0.161395
chr10	79223272	79223372	4533594	0	+	0.63	(0.58,1]	chr10	432457	66	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	4	82	2	2.15135	2.5945549999999997	3.03776	0.0825864	0.00720487	0.179396	0.0543254
chr19	54460080	54460177	7292470	0	+	0.597938	(0.58,1]	chr19	750774	13	UTR3	UTR3:EXON_MRNA:INTRON	LENG8	ENSG00000167615.17	ENST00000616932.4:ENST00000326764.10:ENST00000376514.6:ENST00000610347.1:ENST00000421200.1	protein_coding	protein_coding	protein_coding	protein_coding	10	197	2	2.2992	2.59417	2.88914	0.0132209	0.0125893	0.0793566	0.0761905
chr13	113329680	113329780	5753227	0	-	0.48	(0.45,0.485]	chr13	564094	32	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	5	99	2	2.15468	2.594075	3.03347	0.0489373	0.0329339	0.146035	0.132393
chr11	65433657	65433757	4871678	0	+	0.23	[0,0.29]	chr11	468177	110	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	28	590	2	2.40154	2.593955	2.78637	0.0165154	0.00323713	0.0880991	0.0319521
chr14	19097200	19097300	5754312	0	+	0.58	(0.523,0.58]	chr14	564239	34	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000619938.1:ENST00000644980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	10	220	2	2.50844	2.59353	2.67862	0.034541	0.00611649	0.126106	0.0489549
chr8	38767396	38767496	3802229	0	+	0.45	(0.419,0.45]	chr8	365828	96	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	94	2	2.21336	2.593495	2.97363	0.0596114	0.0409409	0.157889	0.147408
chr16	23391074	23391170	6567887	0	-	0.479167	(0.45,0.485]	chr16	655265	4	INTRON	INTRON	COG7	ENSG00000168434.13	ENST00000307149.10:ENST00000566364.1:ENST00000561854.1:ENST00000569635.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	2.49062	2.59253	2.69444	0.104221	0.0471378	0.19835	0.156915
chr14	89254812	89254912	6026646	0	-	0.6	(0.58,1]	chr14	591432	236	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	82	2	2.11464	2.592525	3.07041	0.0873232	0.00661304	0.183238	0.0512951
chr13	113349948	113350048	5753432	0	-	0.64	(0.58,1]	chr13	564102	46	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.40217	2.592015	2.78186	0.100879	0.0342923	0.196131	0.13449
chr17	77487323	77487423	6805255	0	+	0.69	(0.58,1]	chr17	686823	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	45	2	2.40217	2.592015	2.78186	0.100879	0.0342923	0.196131	0.13449
chr7	1071382	1071482	3526941	0	-	0.64	(0.58,1]	chr7	340585	162	INTRON	INTRON	C7orf50	ENSG00000146540.15	ENST00000357429.10:ENST00000397100.6:ENST00000397098.8:ENST00000488073.1:ENST00000491163.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.40217	2.592015	2.78186	0.100879	0.0342923	0.196131	0.13449
chr6	142318831	142318931	3012046	0	+	0.55	(0.523,0.58]	chr6	294688	88	INTRON	INTRON	ADGRG6	ENSG00000112414.15	ENST00000230173.10:ENST00000367608.6:ENST00000415128.6:ENST00000296932.13:ENST00000367609.8:ENST00000541199.5:ENST00000545477.1:ENST00000435011.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	69	2	2.52319	2.5918650000000003	2.66054	0.0806884	0.0287266	0.177452	0.123764
chr6	157310585	157310685	3298397	0	-	0.6	(0.58,1]	chr6	319197	172	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	22	325	2	1.77411	2.5915150000000002	3.40892	0.026076	0.00422679	0.116873	0.0422099
chr2	127386851	127386951	1265644	0	-	0.44	(0.419,0.45]	chr2	136374	433	INTRON	INTRON	MAP3K2	ENSG00000169967.17	ENST00000682094.1:ENST00000409947.5	protein_coding	protein_coding	protein_coding	protein_coding	3	81	2	2.1235	2.590725	3.05795	0.0693342	0.0529681	0.194077	0.149208
chr8	22389352	22389451	3770242	0	+	0.646465	(0.58,1]	chr8	362727	95	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	8	108	2	1.7733	2.590485	3.40767	0.0423318	0.0197265	0.149195	0.0958249
chr3	8649891	8649991	1678353	0	-	0.61	(0.58,1]	chr3	175456	52	INTRON	INTRON	SSUH2	ENSG00000125046.16	ENST00000341795.7:ENST00000420394.5:ENST00000455157.6:ENST00000317371.8:ENST00000435138.5:ENST00000415132.5:ENST00000466215.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	47	2	2.47204	2.58792	2.7038	0.0648563	0.0623526	0.181127	0.162218
chr7	47477405	47477505	3588582	0	-	0.65	(0.58,1]	chr7	346123	243	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	2	47	2	2.47204	2.58792	2.7038	0.0648563	0.0623526	0.181127	0.162218
chr11	9289337	9289436	4990946	0	-	0.40404	(0.39,0.419]	chr11	483068	4	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	126	2	2.03761	2.587065	3.13652	0.0940242	0.00837658	0.188571	0.0600586
chr17	55322837	55322935	6757698	0	+	0.285714	[0,0.29]	chr17	681735	21	UTR3	UTR3:EXON_MRNA	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000573945.5:ENST00000575345.5	protein_coding	protein_coding	protein_coding	protein_coding	6	97	2	1.82473	2.587005	3.34928	0.0514952	0.0227738	0.165869	0.102982
chr11	70587329	70587429	5060146	0	-	0.6	(0.58,1]	chr11	492663	840	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	62	2	2.07697	2.585495	3.09402	0.0924023	0.0174733	0.188571	0.0928044
chr17	17822817	17822917	6865749	0	-	0.58	(0.523,0.58]	chr17	695915	19	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	99	2	2.52319	2.58544	2.64769	0.0453055	0.0287266	0.14196	0.123764
chr17	77351898	77351998	6803878	0	+	0.57	(0.523,0.58]	chr17	686742	277	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	69	2	2.39285	2.5846999999999998	2.77655	0.0685533	0.0376513	0.165066	0.140049
chr17	72539266	72539366	6963703	0	-	0.6	(0.58,1]	chr17	710389	48	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	5	86	2	2.51137	2.584535	2.6577	0.0695799	0.011436	0.167028	0.0724523
chr6	167920114	167920212	3074297	0	+	0.55102	(0.523,0.58]	chr6	298906	8	INTRON	INTRON	AFDN	ENSG00000130396.21	ENST00000683244.1:ENST00000351017.9:ENST00000344191.8:ENST00000392112.5:ENST00000392108.7:ENST00000400822.7:ENST00000447894.6:ENST00000366809.6:ENST00000366806.6:ENST00000511637.5:ENST00000497596.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	79	2	2.48549	2.5841250000000002	2.68276	0.0582885	0.0464998	0.156036	0.155373
chr20	33010623	33010723	7457395	0	+	0.61	(0.58,1]	chr20	776366	2	SS3_PROX	SS3_PROX:INTRON	BPIFB2	ENSG00000078898.7	ENST00000170150.4	protein_coding	protein_coding	protein_coding	protein_coding	7	139	2	2.43294	2.5839749999999997	2.73501	0.0216297	0.0139824	0.100615	0.0827181
chr9	133801795	133801894	4428409	0	-	0.646465	(0.58,1]	chr9	423268	36	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.45703	2.5837250000000003	2.71042	0.0933945	0.0396128	0.188571	0.143388
chr16	29268514	29268614	6433522	0	+	0.63	(0.58,1]	chr16	636745	164	INTRON	INTRON	ENSG00000284685	ENSG00000284685.2	ENST00000641956.1:ENST00000691488.1	lncRNA	lncRNA	lncRNA	lncRNA	5	104	2	2.18459	2.5834349999999997	2.98228	0.0341377	0.0198344	0.134338	0.096302
chr6	158567324	158567424	3063968	0	+	0.45	(0.419,0.45]	chr6	297687	67	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	10	241	2	2.02735	2.58343	3.13951	0.0320318	0.0183231	0.12988	0.0923332
chr22	50392515	50392612	7754159	0	+	0.618557	(0.58,1]	chr22	812494	1	INTRON	INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9	protein_coding	protein_coding	protein_coding	protein_coding	4	83	2	2.50339	2.583125	2.66286	0.0468259	0.0183006	0.143232	0.0958973
chr2	240622901	240623000	1075172	0	+	0.636364	(0.58,1]	chr2	116654	35	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.55596	2.583025	2.61009	0.0747426	0.0534085	0.172361	0.167062
chr16	50594999	50595099	6451877	0	+	0.52	(0.485,0.523]	chr16	639902	364	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	85	2	1.94261	2.58279	3.22297	0.062577	0.0348463	0.181719	0.126697
chrX	133650141	133650240	8112657	0	-	0.393939	(0.39,0.419]	chrX	845480	532	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000692074.1:ENST00000667662.1:ENST00000666017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	104	2	2.00843	2.5825	3.15657	0.047459	0.0438962	0.157936	0.139792
chr16	22444128	22444228	6422243	0	+	0.52	(0.485,0.523]	chr16	635236	60	INTRON	INTRON	SMG1P1	ENSG00000237296.10	ENST00000446662.5:ENST00000381231.5:ENST00000309865.11:ENST00000691795.1:ENST00000308347.10:ENST00000687936.1:ENST00000691423.1	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	2	52	2	2.49197	2.58178	2.67159	0.10114	0.0478226	0.196131	0.1588
chr6	1901714	1901814	3081890	0	-	0.41	(0.39,0.419]	chr6	299482	1588	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	118	2	2.20331	2.581435	2.95956	0.0583678	0.0267013	0.155373	0.118343
chr13	113332970	113333069	5753260	0	-	0.474747	(0.45,0.485]	chr13	564094	65	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	2.50637	2.58142	2.65647	0.0837071	0.0310626	0.181508	0.127822
chr1	43597647	43597747	107427	0	+	0.59	(0.58,1]	chr1	13242	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	4	82	2	2.41557	2.580805	2.74604	0.0542363	0.015009	0.15176	0.0852854
chr20	64271668	64271761	7511229	0	+	0.569892	(0.523,0.58]	chr20	783908	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	PCMTD2	ENSG00000203880.12	ENST00000299468.11:ENST00000369758.8:ENST00000308824.11:ENST00000609372.1:ENST00000609818.1:ENST00000266078.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	137	2	2.34664	2.57988	2.81312	0.0413259	0.0249853	0.148318	0.10758
chr5	180573389	180573487	2606407	0	+	0.44898	(0.419,0.45]	chr5	259158	16	INTRON	INTRON	CNOT6	ENSG00000113300.13	ENST00000261951.9:ENST00000393356.7:ENST00000618123.4	protein_coding	protein_coding	protein_coding	protein_coding	4	93	2	2.27509	2.579585	2.88408	0.0674152	0.0362019	0.163486	0.139793
chr19	34383997	34384097	7243190	0	+	0.54	(0.523,0.58]	chr19	741718	20	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	165	2	2.07805	2.57952	3.08099	0.0476935	0.0155715	0.158666	0.0849828
chr22	25488223	25488323	7701426	0	+	0.44	(0.419,0.45]	chr22	805972	267	INTRON	INTRON	CRYBB2P1	ENSG00000100058.13	ENST00000686640.1:ENST00000509460.3:ENST00000354451.6	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript	3	78	2	2.30548	2.579215	2.85295	0.0703179	0.04996	0.168159	0.161395
chr17	55276283	55276383	6757221	0	+	0.42	(0.419,0.45]	chr17	681704	78	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	18	437	2	2.40134	2.57849	2.75564	0.0385049	0.00431209	0.131324	0.0388769
chr22	28918880	28918980	7705630	0	+	0.48	(0.45,0.485]	chr22	806321	10	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7:ENST00000402174.5	protein_coding	protein_coding	protein_coding	protein_coding	4	87	2	2.54017	2.578465	2.61676	0.0883035	0.0185243	0.183874	0.0969609
chr17	55277882	55277982	6757237	0	+	0.38	(0.36,0.39]	chr17	681704	94	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	143	2	2.44026	2.57813	2.716	0.0685343	0.0100379	0.165066	0.0670367
chr20	41559327	41559427	7564231	0	-	0.38	(0.36,0.39]	chr20	790090	76	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	116	2	1.70592	2.5778250000000003	3.44973	0.0729146	0.0278256	0.199669	0.113073
chr12	102854775	102854865	5485495	0	-	0.388889	(0.36,0.39]	chr12	539525	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	PAH	ENSG00000171759.10	ENST00000553106.6:ENST00000307000.7:ENST00000549111.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	159	2	2.21851	2.57764	2.93677	0.0598652	0.018625	0.158491	0.0974665
chr2	235503441	235503541	1062630	0	+	0.44	(0.419,0.45]	chr2	115651	82	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	108	2	2.47479	2.5773200000000003	2.67985	0.068283	0.0238876	0.164651	0.111747
chr8	17658046	17658145	3944965	0	-	0.50505	(0.485,0.523]	chr8	376873	16	INTRON	INTRON	MTUS1	ENSG00000129422.15	ENST00000381869.5:ENST00000544260.3:ENST00000520196.5:ENST00000297488.10:ENST00000517413.5:ENST00000693296.1:ENST00000262102.10:ENST00000381861.7:ENST00000519263.5:ENST00000634613.1:ENST00000518713.5:ENST00000522757.5:ENST00000521772.5:ENST00000524371.5:ENST00000517818.5:ENST00000524044.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	53	2	2.53228	2.5770999999999997	2.62192	0.0849566	0.0614918	0.181766	0.18013
chr14	95413341	95413441	6048910	0	-	0.61	(0.58,1]	chr14	593438	62	UTR3	UTR3:EXON_MRNA	SYNE3	ENSG00000176438.13	ENST00000682763.1:ENST00000557275.5	protein_coding	protein_coding	protein_coding	protein_coding	3	62	2	2.11464	2.5757000000000003	3.03676	0.0873232	0.0198789	0.183238	0.100864
chr13	98259601	98259701	5634827	0	+	0.25	[0,0.29]	chr13	553480	144	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	3	65	2	2.11902	2.57501	3.031	0.0883944	0.0223108	0.183874	0.108193
chr7	47358704	47358803	3587378	0	-	0.484848	(0.45,0.485]	chr7	346030	120	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	3	71	2	2.37986	2.57465	2.76944	0.0716626	0.0401325	0.168159	0.144727
chr20	37395661	37395761	7473059	0	+	0.65	(0.58,1]	chr20	778189	1	SS3_PROX	SS3_PROX:INTRON	SRC	ENSG00000197122.13	ENST00000692112.1:ENST00000692423.1:ENST00000373578.7:ENST00000373567.6:ENST00000373558.2:ENST00000358208.9:ENST00000489153.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	60	2	2.40217	2.574105	2.74604	0.100879	0.015009	0.196131	0.0852854
chr7	138546476	138546576	3502873	0	+	0.36	(0.33,0.36]	chr7	337534	73	INTRON	INTRON	TRIM24	ENSG00000122779.18	ENST00000343526.9:ENST00000415680.6:ENST00000497516.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	121	2	2.12569	2.57369	3.02169	0.0792023	0.0104209	0.176258	0.0684504
chr3	197515960	197516060	1991547	0	-	0.64	(0.58,1]	chr3	202753	2	INTRON	INTRON	BDH1	ENSG00000161267.12	ENST00000358186.6:ENST00000392378.6:ENST00000392379.6:ENST00000651856.1:ENST00000441275.5:ENST00000479425.5:ENST00000446746.5:ENST00000477015.5:ENST00000434143.5:ENST00000432819.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	61	2	2.15496	2.57288	2.9908	0.0548868	0.0409591	0.168717	0.136191
chr1	8759632	8759732	395153	0	-	0.43	(0.419,0.45]	chr1	45073	59	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000656437.1:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	5	128	2	2.5242	2.5723700000000003	2.62054	0.0554638	0.0215368	0.154188	0.105542
chr2	65421765	65421865	1172073	0	-	0.3	(0.29,0.33]	chr2	127582	412	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	5	94	2	1.91321	2.571895	3.23058	0.0532726	0.0331025	0.167062	0.123313
chr7	96220554	96220654	3642499	0	-	0.26	[0,0.29]	chr7	350731	4	INTRON	INTRON	SLC25A13	ENSG00000004864.14	ENST00000265631.10:ENST00000416240.6:ENST00000472162.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	47	2	2.4797	2.57189	2.66408	0.0920821	0.0466601	0.188571	0.156477
chr17	76334128	76334227	6975355	0	-	0.606061	(0.58,1]	chr17	712036	13	INTRON	INTRON	PRPSAP1	ENSG00000161542.17	ENST00000446526.8:ENST00000324684.8:ENST00000435555.6:ENST00000436498.6:ENST00000494662.5:ENST00000423915.1:ENST00000442767.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	83	2	2.35	2.5708900000000003	2.79178	0.0565563	0.017212	0.154343	0.0923809
chr5	1102311	1102410	2608874	0	-	0.575758	(0.523,0.58]	chr5	259667	77	INTRON	INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10	protein_coding	protein_coding	protein_coding	protein_coding	5	113	2	2.51524	2.57042	2.6256	0.0469129	0.0185628	0.143232	0.0971472
chr6	63641377	63641476	2934316	0	+	0.454545	(0.45,0.485]	chr6	288790	42	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000262043.8:ENST00000506783.5:ENST00000481385.6:ENST00000515594.5:ENST00000494284.6:ENST00000509876.5:ENST00000509330.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	85	2	2.16768	2.56977	2.97186	0.0536124	0.0412837	0.150486	0.148252
chr2	222942251	222942350	1038547	0	+	0.262626	[0,0.29]	chr2	113299	7	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ACSL3	ENSG00000123983.15	ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	17	333	2	2.54197	2.5693349999999997	2.5967	0.0164285	0.0054125	0.0877458	0.045258
chr6	158568423	158568523	3063979	0	+	0.63	(0.58,1]	chr6	297687	78	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	7	135	2	2.14688	2.569135	2.99139	0.0510446	0.00452153	0.148503	0.0400651
chr21	44869202	44869300	7678534	0	-	0.367347	(0.36,0.39]	chr21	802773	32	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	147	2	2.51946	2.56801	2.61656	0.057025	0.03879	0.173546	0.131324
chr2	240523491	240523588	1394671	0	-	0.628866	(0.58,1]	chr2	149021	17	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ANKMY1	ENSG00000144504.16	ENST00000361678.8:ENST00000391987.5:ENST00000401804.6:ENST00000272972.7:ENST00000406958.5:ENST00000373318.6:ENST00000403283.5:ENST00000405523.7:ENST00000405002.5:ENST00000484526.5:ENST00000480230.5:ENST00000459901.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	59	2	2.56085	2.56772	2.57459	0.0803939	0.0224622	0.177452	0.108193
chrX	74242076	74242148	8068684	0	-	0.430556	(0.419,0.45]	chrX	841743	3	EXON_LNCRNA	EXON_LNCRNA:INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000641360.1:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1	lncRNA	lncRNA	lncRNA	lncRNA	2	59	2	2.52086	2.5673899999999996	2.61392	0.0961463	0.0683849	0.193274	0.189169
chr2	235510635	235510735	1062702	0	+	0.51	(0.485,0.523]	chr2	115651	154	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	73	2	2.21906	2.567215	2.91537	0.0861655	0.0298565	0.181978	0.126732
chr3	172176549	172176649	1628839	0	+	0.47	(0.45,0.485]	chr3	170559	276	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1:ENST00000476794.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	212	2	2.21605	2.56685	2.91765	0.022193	0.0185737	0.101857	0.0972014
chr19	947506	947606	7185321	0	+	0.66	(0.58,1]	chr19	730741	144	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	61	2	2.0383	2.56616	3.09402	0.0978534	0.0174733	0.191981	0.0928044
chrX	1397324	1397424	7830134	0	+	0.62	(0.58,1]	chrX	822054	1	SS5_PROX	SS5_PROX:INTRON	LINC00106	ENSG00000236871.7	ENST00000434938.7:ENST00000430235.7	lncRNA	lncRNA	lncRNA	lncRNA	7	136	2	2.23903	2.5660350000000003	2.89304	0.0434216	0.00592504	0.138923	0.047896
chr16	46904063	46904162	6442624	0	+	0.626263	(0.58,1]	chr16	639007	29	INTRON	INTRON	GPT2	ENSG00000166123.14	ENST00000340124.9:ENST00000562132.5:ENST00000440783.2	protein_coding	protein_coding	protein_coding	protein_coding	11	190	2	1.97987	2.5653699999999997	3.15087	0.0237523	0.00950182	0.111436	0.065705
chr1	1025847	1025946	973	0	+	0.686869	(0.58,1]	chr1	166	30	INTRON	INTRON	AGRN	ENSG00000188157.15	ENST00000379370.7:ENST00000620552.4	protein_coding	protein_coding	protein_coding	protein_coding	2	46	2	2.47204	2.56487	2.6577	0.0695799	0.0623526	0.181127	0.167028
chr14	103107323	103107423	5921894	0	+	0.64	(0.58,1]	chr14	579227	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000560925.5:ENST00000559661.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	59	2	2.50987	2.564635	2.6194	0.0865901	0.0202577	0.182221	0.102015
chr2	87475453	87475552	847396	0	+	0.484848	(0.45,0.485]	chr2	95712	22	INTRON	INTRON	CYTOR:ENSG00000284879	ENSG00000222041.12:ENSG00000284879.1	ENST00000642796.1:ENST00000643589.1:ENST00000642451.1:ENST00000646386.1:ENST00000644478.1:ENST00000409139.6:ENST00000331944.10:ENST00000644125.1:ENST00000643743.1:ENST00000644577.1:ENST00000643276.1:ENST00000409898.2:ENST00000419680.6:ENST00000644976.1:ENST00000643070.1:ENST00000646855.1:ENST00000414584.1:ENST00000455131.5:ENST00000646636.1:ENST00000642293.1:ENST00000423846.5:ENST00000644040.1:ENST00000645138.1:ENST00000437561.2:ENST00000629257.1:ENST00000414030.6	lncRNA	lncRNA	lncRNA	lncRNA	5	101	2	2.4725799999999998	2.5645249999999997	2.65647	0.0837071	0.0161485	0.181508	0.0899257
chr3	65907874	65907974	1814557	0	-	0.49	(0.485,0.523]	chr3	187310	3	INTRON	INTRON	MAGI1:MAGI1-IT1	ENSG00000151276.24:ENSG00000272610.1	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5:ENST00000460754.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:retained_intron:lncRNA	4	82	2	2.34984	2.564305	2.77877	0.0682166	0.0271926	0.164526	0.119337
chr6	157313283	157313383	3298424	0	-	0.58	(0.523,0.58]	chr6	319197	199	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	14	252	2	2.14756	2.56245	2.97734	0.0187418	0.0155174	0.0936297	0.0872863
chr9	124496817	124496916	4402693	0	-	0.69697	(0.58,1]	chr9	419817	33	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	5	82	2	1.80292	2.56226	3.3216	0.059442300000000003	0.0230709	0.176598	0.102982
chr3	120669326	120669426	1887818	0	-	0.41	(0.39,0.419]	chr3	191540	163	INTRON	INTRON	HGD	ENSG00000113924.12	ENST00000283871.10:ENST00000476082.2:ENST00000485313.5:ENST00000488183.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	141	2	2.35992	2.562	2.76408	0.0427654	0.0227734	0.13762	0.108552
chr6	1681425	1681525	3079684	0	-	0.49	(0.485,0.523]	chr6	299464	11	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000533279.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	68	2	2.49197	2.56128	2.63059	0.10114	0.0230209	0.196131	0.109585
chr7	23455381	23455481	3553058	0	-	0.47	(0.45,0.485]	chr7	343233	242	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000491719.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	70	2	2.54618	2.561055	2.57593	0.093234	0.0285948	0.188571	0.123344
chr11	65425968	65426068	4871601	0	+	0.48	(0.45,0.485]	chr11	468177	33	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000693290.1:ENST00000616315.2	lncRNA	lncRNA	lncRNA	lncRNA	129	3026	2	2.46362	2.56061	2.6576	0.0132106	0.00425	0.078618	0.0383706
chr3	13275511	13275611	1691897	0	-	0.58	(0.523,0.58]	chr3	176566	1110	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	2	52	2	2.54344	2.560555	2.57767	0.090356	0.0599121	0.186369	0.177269
chr5	14218844	14218944	2384107	0	+	0.58	(0.523,0.58]	chr5	238473	345	INTRON	INTRON	TRIO	ENSG00000038382.21	ENST00000344204.9:ENST00000502816.1:ENST00000505971.5:ENST00000512070.6:ENST00000509967.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	2	52	2	2.54344	2.560555	2.57767	0.090356	0.0599121	0.186369	0.177269
chr3	5211991	5212083	1399256	0	+	0.51087	(0.485,0.523]	chr3	149907	4	INTRON	INTRON	EDEM1	ENSG00000134109.11	ENST00000256497.9	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.45723	2.559995	2.66276	0.0803133	0.0700289	0.195209	0.177452
chr1	155975400	155975498	599935	0	-	0.540816	(0.523,0.58]	chr1	70603	32	INTRON	INTRON	ARHGEF2	ENSG00000116584.22	ENST00000313695.11:ENST00000361247.9:ENST00000477754.2:ENST00000673475.1:ENST00000462460.6:ENST00000313667.8:ENST00000471589.5:ENST00000476273.1:ENST00000497907.5:ENST00000465079.1:ENST00000495070.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	128	2	2.46076	2.5599499999999997	2.65914	0.0605206	0.00961966	0.158506	0.0655995
chr8	38771591	38771691	3802271	0	+	0.48	(0.45,0.485]	chr8	365828	138	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	70	2	2.53391	2.5594200000000003	2.58493	0.0985287	0.0263561	0.193064	0.118015
chrX	1398624	1398724	7830147	0	+	0.56	(0.523,0.58]	chrX	822056	4	SS3_PROX	SS3_PROX:INTRON	LINC00106	ENSG00000236871.7	ENST00000434938.7:ENST00000430235.7	lncRNA	lncRNA	lncRNA	lncRNA	7	150	2	1.85603	2.559415	3.2628	0.0498814	0.0160973	0.161221	0.0869879
chr3	171732246	171732346	1957770	0	-	0.48	(0.45,0.485]	chr3	199043	58	INTRON	INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9:ENST00000498278.5:ENST00000475273.6:ENST00000440204.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	70	2	2.42327	2.559195	2.69512	0.0794176	0.0367983	0.176565	0.139793
chr5	177087418	177087490	2597759	0	+	0.652778	(0.58,1]	chr5	257883	1	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	FGFR4	ENSG00000160867.15	ENST00000393648.6:ENST00000503708.5:ENST00000502906.5:ENST00000514472.1:ENST00000292408.9:ENST00000507708.1:ENST00000510911.5:ENST00000513166.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	45	2	2.55596	2.5584049999999996	2.56085	0.0803939	0.0534085	0.177452	0.167062
chr2	61537375	61537461	1158370	0	-	0.790698	(0.58,1]	chr2	126970	4	SS5_PROX	SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000676789.1:ENST00000678741.1:ENST00000406957.5:ENST00000443240.5:ENST00000481214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	10	154	2	1.83988	2.5580499999999997	3.27622	0.0333174	0.0112073	0.133139	0.0718473
chr16	67913987	67914086	6473538	0	+	0.575758	(0.523,0.58]	chr16	642897	39	INTRON	INTRON	PSKH1	ENSG00000159792.10	ENST00000291041.6	protein_coding	protein_coding	protein_coding	protein_coding	3	73	2	2.24595	2.5576600000000003	2.86937	0.0830542	0.0324455	0.180329	0.130548
chr18	711460	711560	7103099	0	-	0.48	(0.45,0.485]	chr18	723444	45	INTRON	INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000584453.5:ENST00000578651.5:ENST00000585004.5:ENST00000583771.1:ENST00000580605.5:ENST00000581332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	96	2	2.28369	2.55706	2.83043	0.0812615	0.0153861	0.178194	0.0869771
chr19	56834841	56834938	7410668	0	-	0.484536	(0.45,0.485]	chr19	771664	7	INTRON	INTRON	ZIM2:PEG3	ENSG00000269699.7:ENSG00000198300.14	ENST00000593711.6:ENST00000689654.1:ENST00000629319.3:ENST00000599935.5:ENST00000595671.5:ENST00000597281.5:ENST00000601070.5:ENST00000693159.1:ENST00000650111.1:ENST00000648694.1:ENST00000326441.15:ENST00000649233.1:ENST00000649680.1:ENST00000649876.1:ENST00000649428.1:ENST00000650632.1:ENST00000650102.1:ENST00000649735.1:ENST00000647621.1:ENST00000598410.5:ENST00000593695.5:ENST00000599577.5:ENST00000594389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	178	2	1.74737	2.5564400000000003	3.36551	0.0524925	0.0143964	0.167062	0.0822121
chr17	43541579	43541679	6909584	0	-	0.48	(0.45,0.485]	chr17	703271	47	INTRON	INTRON	ETV4	ENSG00000175832.13	ENST00000538265.5:ENST00000319349.10:ENST00000393664.6:ENST00000545954.5:ENST00000545089.5:ENST00000591713.5:ENST00000590236.5:ENST00000585508.5:ENST00000587151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	70	2	2.37986	2.55631	2.73276	0.0754102	0.0401325	0.173278	0.144727
chr9	69715367	69715467	4313144	0	-	0.34	(0.33,0.36]	chr9	412346	60	UTR3	UTR3:EXON_MRNA	PTAR1	ENSG00000188647.13	ENST00000377200.9:ENST00000340434.5	protein_coding	protein_coding	protein_coding	protein_coding	4	88	2	2.54645	2.555245	2.56404	0.0954498	0.019106	0.189038	0.0994227
chr17	29130108	29130204	6876463	0	-	0.458333	(0.45,0.485]	chr17	697994	12	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000590242.5:ENST00000528564.2:ENST00000528322.6:ENST00000585573.6:ENST00000533420.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	54	2	2.49029	2.553525	2.61676	0.0883035	0.0676934	0.193219	0.183874
chr6	144364176	144364276	3020652	0	+	0.47	(0.45,0.485]	chr6	295148	195	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1:ENST00000628146.2:ENST00000421035.2	protein_coding	protein_coding	protein_coding	protein_coding	2	54	2	2.49029	2.553525	2.61676	0.0883035	0.0676934	0.193219	0.183874
chr7	75416880	75416976	3605462	0	-	0.552083	(0.523,0.58]	chr7	348139	2	UTR3	UTR3:EXON_MRNA	POM121C	ENSG00000272391.6	ENST00000615331.5:ENST00000614583.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	130	2	1.70605	2.553155	3.40026	0.0511553	0.0262178	0.164894	0.110264
chr17	57274489	57274587	6759944	0	+	0.530612	(0.523,0.58]	chr17	682085	1	INTRON	INTRON	MSI2	ENSG00000153944.12	ENST00000416426.6:ENST00000284073.7:ENST00000674964.1:ENST00000581776.5:ENST00000674961.1:ENST00000582453.5:ENST00000675656.1:ENST00000322684.7:ENST00000579590.5:ENST00000676073.1:ENST00000675822.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	111	2	2.53372	2.552925	2.57213	0.0541346	0.0162664	0.151733	0.0905283
chr9	107329751	107329847	4210940	0	+	0.46875	(0.45,0.485]	chr9	399927	2	UTR3	UTR3:EXON_MRNA:INTRON	RAD23B	ENSG00000119318.13	ENST00000358015.8:ENST00000416373.6:ENST00000457811.1	protein_coding	protein_coding	protein_coding	protein_coding	17	330	2	2.42435	2.55273	2.68111	0.0272931	0.00758189	0.112348	0.0561937
chr6	3144768	3144867	2828586	0	+	0.535354	(0.523,0.58]	chr6	277604	39	INTRON	INTRON	BPHL	ENSG00000137274.13	ENST00000434640.5:ENST00000430655.6:ENST00000424847.6:ENST00000433912.5:ENST00000380379.10:ENST00000490918.5:ENST00000380375.4:ENST00000488487.2:ENST00000423798.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	109	2	2.09041	2.551965	3.01352	0.0674148	0.0248299	0.192827	0.10758
chr10	28560232	28560332	4469687	0	+	0.57	(0.523,0.58]	chr10	427649	218	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	112	2	2.45602	2.5518549999999998	2.64769	0.0453055	0.021252	0.14196	0.104314
chr22	28916988	28917088	7705611	0	+	0.4	(0.39,0.419]	chr22	806317	326	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7	protein_coding	protein_coding	protein_coding	protein_coding	4	89	2	2.33723	2.55173	2.76623	0.0762396	0.0310948	0.174496	0.127822
chr17	55323620	55323718	6757706	0	+	0.520408	(0.485,0.523]	chr17	681735	29	UTR3	UTR3:EXON_MRNA	HLF	ENSG00000108924.14	ENST00000226067.10	protein_coding	protein_coding	protein_coding	protein_coding	13	290	2	2.38433	2.551545	2.71876	0.0318347	0.00560176	0.121547	0.0461196
chr2	19997556	19997655	1096403	0	-	0.434343	(0.419,0.45]	chr2	119554	4	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MATN3	ENSG00000132031.13	ENST00000407540.8:ENST00000421259.2:ENST00000478482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	104	2	2.23715	2.5512050000000004	2.86526	0.0944246	0.0160871	0.188571	0.0896852
chr8	38762103	38762203	3802176	0	+	0.38	(0.36,0.39]	chr8	365828	43	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	56	2	2.55061	2.5511549999999996	2.5517	0.10062	0.0637554	0.196131	0.184651
chr6	158565227	158565327	3063947	0	+	0.64	(0.58,1]	chr6	297687	46	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	6	122	2	2.44972	2.54957	2.64942	0.0254239	0.0184955	0.108616	0.096816
chr16	81546581	81546681	6508759	0	+	0.53	(0.523,0.58]	chr16	645911	507	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	4	88	2	1.96329	2.549175	3.13506	0.0960312	0.0186841	0.189169	0.0976296
chr2	222942649	222942748	1038551	0	+	0.393939	(0.39,0.419]	chr2	113299	11	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	ACSL3	ENSG00000123983.15	ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	278	2	2.25887	2.5481249999999998	2.83738	0.0281483	0.0141985	0.114057	0.0833845
chr17	77213923	77214023	6803113	0	+	0.64	(0.58,1]	chr17	686683	1	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	SEC14L1	ENSG00000129657.16	ENST00000392476.6:ENST00000430767.8:ENST00000585618.5:ENST00000436233.9:ENST00000443798.8:ENST00000591437.5:ENST00000431431.6:ENST00000588488.1:ENST00000587491.5:ENST00000588721.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	65	2	2.38507	2.547745	2.71042	0.057029	0.0396128	0.154343	0.143388
chr2	222861851	222861951	1037708	0	+	0.47	(0.45,0.485]	chr2	113174	1	SS5_PROX	SS5_PROX:INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	70	2	2.28891	2.54706	2.80521	0.0681544	0.0479351	0.164505	0.159092
chr2	235506738	235506838	1062663	0	+	0.53	(0.523,0.58]	chr2	115651	115	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	81	2	2.07805	2.54686	3.01567	0.0482042	0.0476935	0.158666	0.144601
chr2	165891385	165891484	1300566	0	-	0.373737	(0.36,0.39]	chr2	139463	5	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	TTC21B	ENSG00000123607.16	ENST00000680888.1:ENST00000680947.1:ENST00000681083.1:ENST00000681024.1:ENST00000680690.1:ENST00000679676.1:ENST00000679967.1:ENST00000679356.1:ENST00000680327.1:ENST00000681502.1:ENST00000681167.1:ENST00000681483.1:ENST00000680657.1:ENST00000679931.1:ENST00000681952.1:ENST00000652557.1:ENST00000679799.1:ENST00000681819.1:ENST00000243344.8:ENST00000680925.1:ENST00000679840.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	75	2	2.15686	2.546815	2.93677	0.0642245	0.0598652	0.184676	0.158491
chr1	1306020	1306112	380906	0	-	0.586957	(0.58,1]	chr1	43018	2	INTRON	INTRON	ACAP3	ENSG00000131584.19	ENST00000354700.10:ENST00000472541.5:ENST00000354980.7:ENST00000479108.5:ENST00000438966.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	60	2	1.99855	2.546285	3.09402	0.103709	0.0174733	0.197611	0.0928044
chr8	141414437	141414534	3925981	0	+	0.659794	(0.58,1]	chr8	374792	5	INTRON	INTRON	PTP4A3	ENSG00000184489.13	ENST00000520105.5:ENST00000521578.6:ENST00000523147.5:ENST00000329397.6	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.45703	2.5461400000000003	2.63525	0.0933945	0.0459151	0.188571	0.154743
chr2	3292407	3292506	1081031	0	-	0.636364	(0.58,1]	chr2	117633	97	INTRON	INTRON	EIPR1	ENSG00000032389.13	ENST00000398659.8:ENST00000478754.5:ENST00000382125.9:ENST00000455162.5:ENST00000441271.1:ENST00000463662.5:ENST00000435721.5:ENST00000443925.6:ENST00000406835.6:ENST00000444776.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	59	2	2.21459	2.54465	2.87471	0.0495478	0.0487458	0.160725	0.146562
chr20	44411514	44411613	7483036	0	+	0.707071	(0.58,1]	chr20	779658	29	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000619550.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	59	2	2.21459	2.54465	2.87471	0.0495478	0.0487458	0.160725	0.146562
chrX	109687727	109687826	8091008	0	-	0.313131	(0.29,0.33]	chrX	843698	19	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000505855.1:ENST00000508092.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	92	2	2.0987	2.54369	2.98868	0.0484929	0.0363489	0.145074	0.139793
chr6	158561730	158561830	3063912	0	+	0.59	(0.58,1]	chr6	297687	11	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	11	211	2	2.40444	2.54365	2.68286	0.0249292	0.00562192	0.10758	0.0462153
chrX	133650240	133650340	8112658	0	-	0.44	(0.419,0.45]	chrX	845480	533	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000692074.1:ENST00000667662.1:ENST00000666017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	222	2	2.14225	2.543585	2.94492	0.0726094	0.00483595	0.169012	0.0418176
chr16	50597798	50597898	6451905	0	+	0.57	(0.523,0.58]	chr16	639902	392	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	92	2	2.07142	2.543545	3.01567	0.0482042	0.0376816	0.144601	0.140082
chr20	44426090	44426187	7483192	0	+	0.525773	(0.523,0.58]	chr20	779694	13	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000316099.10:ENST00000372920.1:ENST00000415691.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	67	2	2.34664	2.54277	2.7389	0.072318	0.0413259	0.168347	0.148318
chr2	111473188	111473286	1253374	0	-	0.591837	(0.58,1]	chr2	134923	7	INTRON	INTRON	MIR4435-2HG	ENSG00000172965.17	ENST00000645030.2:ENST00000642191.1:ENST00000673798.1:ENST00000645051.2:ENST00000673649.1:ENST00000669658.1:ENST00000669917.1:ENST00000661559.1:ENST00000653687.1:ENST00000667670.1:ENST00000609220.2:ENST00000656760.1:ENST00000609902.6:ENST00000666683.1:ENST00000674070.1:ENST00000662335.1:ENST00000664422.1:ENST00000673775.1:ENST00000674092.1:ENST00000673958.1:ENST00000658936.1:ENST00000662635.1:ENST00000666204.1:ENST00000659458.1:ENST00000664443.1:ENST00000670295.1:ENST00000661655.1:ENST00000666390.1:ENST00000659079.1:ENST00000660442.1:ENST00000664009.1:ENST00000439362.6:ENST00000654473.1:ENST00000664999.1:ENST00000673728.1:ENST00000659791.1:ENST00000666144.1:ENST00000659933.1:ENST00000670715.1:ENST00000653568.1:ENST00000643013.1:ENST00000673866.1:ENST00000443467.6:ENST00000669875.1:ENST00000673653.1:ENST00000673988.1:ENST00000661945.1:ENST00000669515.1:ENST00000431385.6:ENST00000656416.1:ENST00000674037.1:ENST00000432818.5:ENST00000674013.1:ENST00000444301.5:ENST00000673964.1:ENST00000673845.1:ENST00000673756.1:ENST00000673960.1:ENST00000673804.1:ENST00000673632.1:ENST00000453478.2:ENST00000673937.1:ENST00000673654.1:ENST00000409569.2:ENST00000674087.1:ENST00000419736.5:ENST00000673840.1:ENST00000674045.1:ENST00000673821.1:ENST00000643766.1:ENST00000308604.5:ENST00000604981.5:ENST00000673894.1:ENST00000442293.5:ENST00000441075.1:ENST00000673878.1:ENST00000439494.1	lncRNA	lncRNA	lncRNA	lncRNA	4	79	2	2.22208	2.5422700000000003	2.86246	0.074035	0.0112778	0.171168	0.0717097
chr15	67089807	67089906	6139315	0	+	0.616162	(0.58,1]	chr15	603938	114	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1:ENST00000559937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	76	2	1.99031	2.542165	3.09402	0.0796315	0.0174733	0.176933	0.0928044
chr19	34388596	34388696	7243236	0	+	0.52	(0.485,0.523]	chr19	741718	66	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	76	2	2.41234	2.5419650000000003	2.67159	0.0649766	0.0478226	0.162385	0.1588
chr10	75480305	75480405	4520961	0	+	0.5	(0.485,0.523]	chr10	432249	287	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	3	67	2	2.49197	2.5419	2.59183	0.10114	0.0250389	0.196131	0.114418
chr12	125121241	125121340	5349514	0	+	0.59596	(0.58,1]	chr12	523174	15	EXON_MRNA	EXON_MRNA:INTRON	AACS	ENSG00000081760.17	ENST00000316519.11:ENST00000441247.6:ENST00000316543.14:ENST00000539251.5:ENST00000538851.5:ENST00000545511.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	81	2	2.29193	2.541855	2.79178	0.0565563	0.0198481	0.154343	0.100864
chr10	47531982	47532082	4680502	0	-	0.38	(0.36,0.39]	chr10	446443	81	INTRON	INTRON	ENSG00000254929	ENSG00000254929.6	ENST00000605970.5:ENST00000431840.2	lncRNA	lncRNA	lncRNA	lncRNA	4	90	2	2.53296	2.541785	2.55061	0.10062	0.0204455	0.196131	0.102713
chr20	8430252	8430352	7429570	0	+	0.45	(0.419,0.45]	chr20	773698	582	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	76	2	2.26209	2.5416100000000004	2.82113	0.0733896	0.0541225	0.17026	0.167824
chr17	57999326	57999425	6932036	0	-	0.383838	(0.36,0.39]	chr17	706440	46	INTRON	INTRON	ENSG00000266086	ENSG00000266086.3	ENST00000578794.2:ENST00000665125.1	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay:processed_transcript	4	88	2	2.11574	2.5414950000000003	2.96725	0.0573348	0.0484128	0.160057	0.154343
chr10	75884824	75884924	4525017	0	+	0.52	(0.485,0.523]	chr10	432292	9	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5:ENST00000372499.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	82	2	2.50272	2.541305	2.57989	0.0899526	0.0193199	0.185791	0.0994526
chr3	188241361	188241461	1652672	0	+	0.42	(0.419,0.45]	chr3	173754	8	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	5	106	2	2.32718	2.54125	2.75532	0.0800906	0.0252058	0.177372	0.114877
chr10	32055747	32055847	4662336	0	-	0.67	(0.58,1]	chr10	445120	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	KIF5B	ENSG00000170759.11	ENST00000302418.5	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.47204	2.5410649999999997	2.61009	0.0747426	0.0623526	0.181127	0.172361
chr20	36854887	36854987	7557050	0	-	0.6	(0.58,1]	chr20	789155	151	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9:ENST00000279034.10	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.47204	2.5410649999999997	2.61009	0.0747426	0.0623526	0.181127	0.172361
chr3	48417410	48417510	1766587	0	-	0.62	(0.58,1]	chr3	182222	1	SS5_PROX	SS5_PROX:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000456774.5:ENST00000449094.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	45	2	2.47204	2.5410649999999997	2.61009	0.0747426	0.0623526	0.181127	0.172361
chr17	6690940	6691040	6845978	0	-	0.65	(0.58,1]	chr17	693294	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SLC13A5	ENSG00000141485.17	ENST00000433363.7:ENST00000293800.10:ENST00000381074.8:ENST00000573648.5:ENST00000572727.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	87	2	2.27185	2.5405800000000003	2.80931	0.0433824	0.0273431	0.152119	0.112372
chr15	24984121	24984220	6063686	0	+	0.363636	(0.36,0.39]	chr15	595387	18	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	8	169	2	1.99375	2.540535	3.08732	0.0367412	0.025445	0.139793	0.10868
chr16	31493298	31493382	6580392	0	-	0.535714	(0.523,0.58]	chr16	657882	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RUSF1	ENSG00000140688.17	ENST00000570164.5:ENST00000327237.7:ENST00000568491.1:ENST00000430477.6:ENST00000567994.5:ENST00000567673.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	130	2	2.10134	2.5402199999999997	2.9791	0.0353452	0.0263235	0.137983	0.11063
chr1	85463842	85463942	520000	0	-	0.42	(0.419,0.45]	chr1	61355	287	INTRON	INTRON	DDAH1	ENSG00000153904.21	ENST00000426972.8:ENST00000284031.13	protein_coding	protein_coding	protein_coding	protein_coding	3	75	2	2.42833	2.53946	2.65059	0.0917577	0.0395807	0.188571	0.143388
chr20	8181358	8181457	7427073	0	+	0.242424	[0,0.29]	chr20	773674	306	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	75	2	1.87585	2.537835	3.19982	0.0687997	0.029619	0.193274	0.116079
chr7	29308441	29308541	3335430	0	+	0.51	(0.485,0.523]	chr7	322854	151	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5:ENST00000222792.11:ENST00000409350.5:ENST00000409964.6:ENST00000409922.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	96	2	2.4689	2.53722	2.60554	0.0483104	0.0324744	0.144683	0.130627
chr11	70659327	70659427	5060868	0	-	0.52	(0.485,0.523]	chr11	492673	1	SS5_PROX	SS5_PROX:INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	71	2	2.15873	2.53705	2.91537	0.0938146	0.0298565	0.188571	0.126732
chr6	1871128	1871228	3081584	0	-	0.58	(0.523,0.58]	chr6	299482	1282	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	131	2	1.87659	2.53488	3.19317	0.0366207	0.0352951	0.137983	0.128697
chr15	24983824	24983923	6063683	0	+	0.353535	(0.33,0.36]	chr15	595387	15	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	12	265	2	2.09883	2.53371	2.96859	0.0235092	0.0168929	0.110758	0.0888269
chr8	141403050	141403150	3925866	0	+	0.65	(0.58,1]	chr8	374788	106	INTRON	INTRON	PTP4A3	ENSG00000184489.13	ENST00000520105.5:ENST00000521578.6:ENST00000523147.5	protein_coding	protein_coding	protein_coding	protein_coding	2	44	2	2.50987	2.532915	2.55596	0.0865901	0.0534085	0.182221	0.167062
chr19	56837651	56837751	7410697	0	-	0.62	(0.58,1]	chr19	771672	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ZIM2:PEG3	ENSG00000269699.7:ENSG00000198300.14	ENST00000593711.6:ENST00000689654.1:ENST00000629319.3:ENST00000599935.5:ENST00000693159.1:ENST00000650111.1:ENST00000648694.1:ENST00000326441.15:ENST00000649233.1:ENST00000649680.1:ENST00000649876.1:ENST00000649428.1:ENST00000650632.1:ENST00000650102.1:ENST00000649735.1:ENST00000647621.1:ENST00000598410.5:ENST00000593695.5:ENST00000599577.5:ENST00000594389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	85	2	2.32693	2.53281	2.73869	0.038688	0.0310664	0.142489	0.119778
chr5	1053682	1053782	2608357	0	-	0.56	(0.523,0.58]	chr5	259537	2	SS3_PROX	SS3_PROX:INTRON	SLC12A7	ENSG00000113504.21	ENST00000264930.10:ENST00000634447.1	protein_coding	protein_coding	protein_coding	protein_coding	4	92	2	2.3839	2.53219	2.68048	0.0679164	0.020416	0.164413	0.102668
chr3	58009356	58009455	1483047	0	+	0.666667	(0.58,1]	chr3	159572	1	INTRON	INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	121	2	2.4147	2.53206	2.64942	0.0254239	0.020116	0.108616	0.101405
chr17	80560476	80560576	6809057	0	+	0.6	(0.58,1]	chr17	687806	143	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	2.27185	2.531815	2.79178	0.0565563	0.0433824	0.154343	0.152119
chr4	151260391	151260491	2351887	0	-	0.42	(0.419,0.45]	chr4	235107	325	INTRON	INTRON	SH3D19	ENSG00000109686.19	ENST00000604030.7:ENST00000604440.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	90	2	2.14888	2.531715	2.91455	0.06467	0.0464398	0.162218	0.156036
chr5	74639735	74639832	2691319	0	-	0.350515	(0.33,0.36]	chr5	265803	24	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	ENC1	ENSG00000171617.15	ENST00000618628.4:ENST00000510316.5:ENST00000302351.9:ENST00000651128.1:ENST00000537006.1:ENST00000508331.1:ENST00000509127.2	protein_coding	protein_coding	protein_coding	protein_coding	4	96	2	2.21537	2.531415	2.84746	0.0901875	0.0155175	0.186259	0.0872863
chr8	22370234	22370334	3770050	0	+	0.48	(0.45,0.485]	chr8	362721	21	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	16	331	2	2.45451	2.53132	2.60813	0.0351971	0.00512075	0.127188	0.0435139
chr13	97336933	97337033	5631953	0	+	0.48	(0.45,0.485]	chr13	553188	21	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5:ENST00000692685.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	84	2	2.48439	2.53016	2.57593	0.093234	0.0210032	0.188571	0.103258
chr20	62957510	62957580	7508271	0	+	0.614286	(0.58,1]	chr20	783177	2	CDS	CDS:EXON_MRNA:EXON_LNCRNA	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5:ENST00000411611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	123	2	1.96047	2.53005	3.09963	0.0353654	0.0158502	0.137983	0.0859576
chr9	129497473	129497573	4250750	0	+	0.66	(0.58,1]	chr9	404721	4	SS5_PROX	SS5_PROX:INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	4	69	2	2.22558	2.5297099999999997	2.83384	0.0529065	0.0311606	0.14912	0.127822
chr11	70875818	70875918	5063045	0	-	0.46	(0.45,0.485]	chr11	492728	28	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000460048.1:ENST00000645599.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	69	2	2.28891	2.529175	2.76944	0.0716626	0.0479351	0.168159	0.159092
chr20	49148788	49148888	7572604	0	-	0.51	(0.485,0.523]	chr20	791289	125	INTRON	INTRON	STAU1	ENSG00000124214.21	ENST00000371856.7:ENST00000371828.7:ENST00000340954.11:ENST00000347458.9:ENST00000360426.8:ENST00000371792.5:ENST00000371802.5:ENST00000437404.2	protein_coding	protein_coding	protein_coding	protein_coding	5	110	2	2.47341	2.528085	2.58276	0.0500643	0.0206524	0.147892	0.102713
chr2	61536872	61536953	1158364	0	-	0.419753	(0.419,0.45]	chr2	126969	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000481214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	90	2	2.08138	2.5275049999999997	2.97363	0.0596114	0.0528422	0.167062	0.157889
chr11	65428165	65428265	4871623	0	+	0.37	(0.36,0.39]	chr11	468177	55	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	67	1630	2	2.5232	2.5268300000000004	2.53046	0.0201025	0.0048326	0.097328	0.0418176
chr2	69813701	69813800	825789	0	+	0.40404	(0.39,0.419]	chr2	93042	6	INTRON	INTRON	ANXA4	ENSG00000196975.16	ENST00000477632.5:ENST00000409920.5:ENST00000635311.1:ENST00000394295.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	74	2	2.15477	2.52636	2.89795	0.0645366	0.0636416	0.185295	0.161669
chr1	12588424	12588524	402487	0	-	0.47	(0.45,0.485]	chr1	46222	74	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	52	2	2.49062	2.52611	2.5616	0.104221	0.0598406	0.19835	0.177269
chr12	26768658	26768758	5400956	0	-	0.37	(0.36,0.39]	chr12	528735	425	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000545235.1:ENST00000242737.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	72	2	2.46174	2.5260249999999997	2.59031	0.0956255	0.0361885	0.189038	0.139793
chr8	22369735	22369835	3770045	0	+	0.47	(0.45,0.485]	chr8	362721	16	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	9	171	2	1.85011	2.525935	3.20176	0.0423252	0.0191329	0.149195	0.0952349
chr1	91750208	91750308	526451	0	-	0.51	(0.485,0.523]	chr1	61884	149	INTRON	INTRON	TGFBR3	ENSG00000069702.11	ENST00000212355.9:ENST00000533089.5:ENST00000370399.6:ENST00000525962.5:ENST00000532540.5:ENST00000465892.6:ENST00000468996.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	82	2	2.49197	2.5257899999999998	2.55961	0.10114	0.0169478	0.196131	0.0923809
chr20	31668144	31668244	7542483	0	-	0.61	(0.58,1]	chr20	787260	6	INTRON	INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000677494.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	103	2	1.61489	2.52507	3.43525	0.0599364	0.0187495	0.177335	0.0936297
chr6	157310485	157310585	3298396	0	-	0.56	(0.523,0.58]	chr6	319197	171	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	14	245	2	2.08082	2.523085	2.96535	0.0191443	0.0183028	0.0959062	0.0952866
chr14	89326914	89327014	6027370	0	-	0.54	(0.523,0.58]	chr14	591449	420	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	110	2	2.03388	2.52287	3.01186	0.0867547	0.00944557	0.182221	0.0650078
chr17	55308140	55308240	6757545	0	+	0.45	(0.419,0.45]	chr17	681718	188	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	125	2	1.85701	2.52269	3.18837	0.049944	0.0439311	0.161395	0.139875
chr20	8523731	8523831	7430505	0	+	0.43	(0.419,0.45]	chr20	773698	1517	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	114	2	1.80628	2.521845	3.23741	0.0615836	0.0408938	0.18013	0.136191
chr11	70816065	70816165	5062444	0	-	0.5	(0.485,0.523]	chr11	492713	85	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000468619.6:ENST00000460048.1:ENST00000425049.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	66	2	2.38071	2.521735	2.66276	0.0803133	0.0388914	0.177452	0.142578
chr16	46901290	46901389	6442596	0	+	0.606061	(0.58,1]	chr16	639007	1	INTRON	INTRON	GPT2	ENSG00000166123.14	ENST00000340124.9:ENST00000562132.5:ENST00000440783.2	protein_coding	protein_coding	protein_coding	protein_coding	4	70	2	1.91069	2.521515	3.13234	0.0607034	0.0322188	0.179468	0.121593
chr17	7106999	7107075	6847699	0	-	0.631579	(0.58,1]	chr17	693406	1	CDS	CDS:EXON_MRNA	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6	protein_coding	protein_coding	protein_coding	protein_coding	6	107	2	2.37818	2.5213099999999997	2.66444	0.0354508	0.0160476	0.127188	0.0896435
chr1	23325629	23325729	423805	0	-	0.36	(0.33,0.36]	chr1	49733	15	INTRON	INTRON	HNRNPR	ENSG00000125944.21	ENST00000478691.5:ENST00000302271.11:ENST00000374616.7:ENST00000374612.5:ENST00000675048.1:ENST00000606561.5:ENST00000427764.3:ENST00000463552.5:ENST00000470941.5:ENST00000476451.2	protein_coding	protein_coding	protein_coding	protein_coding	2	53	2	2.51922	2.52062	2.52202	0.100822	0.0659899	0.196131	0.189025
chr19	11553153	11553252	7332766	0	-	0.69697	(0.58,1]	chr19	758564	2	UTR3	UTR3:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ELOF1	ENSG00000130165.10	ENST00000586683.5:ENST00000252445.7:ENST00000587806.5	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.43115	2.52062	2.61009	0.0747426	0.0309513	0.172361	0.127822
chr20	37518212	37518312	7559952	0	-	0.4	(0.39,0.419]	chr20	789583	9	UTR3	UTR3:EXON_MRNA:INTRON	BLCAP	ENSG00000166619.15	ENST00000467603.1:ENST00000373537.7:ENST00000397137.5:ENST00000414542.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	72	2	2.41984	2.520555	2.62127	0.0923527	0.0393507	0.188571	0.143358
chr16	85582037	85582137	6518893	0	+	0.66	(0.58,1]	chr16	646396	253	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	2	45	2	2.38295	2.520325	2.6577	0.0730701	0.0695799	0.199669	0.167028
chr11	65423771	65423871	4871579	0	+	0.61	(0.58,1]	chr11	468177	11	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000612303.2:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000642367.1	lncRNA	lncRNA	lncRNA	lncRNA	255	4757	2	2.30854	2.52011	2.73168	0.00619969	0.00383519	0.0520424	0.0358793
chr3	71416459	71416558	1829613	0	-	0.484848	(0.45,0.485]	chr3	188242	558	INTRON	INTRON	FOXP1	ENSG00000114861.24	ENST00000318789.11:ENST00000649528.3:ENST00000615603.5:ENST00000493089.7:ENST00000649596.1:ENST00000648710.2:ENST00000327590.9:ENST00000648321.1:ENST00000649610.2:ENST00000648718.1:ENST00000649631.1:ENST00000648384.1:ENST00000648380.1:ENST00000650068.2:ENST00000650295.1:ENST00000648895.1:ENST00000318779.7:ENST00000471386.3:ENST00000650156.1:ENST00000649133.1:ENST00000649145.1:ENST00000648192.1:ENST00000649328.1:ENST00000649175.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	68	2	2.42327	2.520015	2.61676	0.0883035	0.0367983	0.183874	0.139793
chr17	38727196	38727296	6729355	0	+	0.3	(0.29,0.33]	chr17	676371	17	UTR3	UTR3:EXON_MRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5	protein_coding	protein_coding	protein_coding	protein_coding	12	241	2	1.73505	2.51989	3.30473	0.0850061	0.00181569	0.181766	0.0215865
chr11	65424470	65424570	4871586	0	+	0.52	(0.485,0.523]	chr11	468177	18	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000642367.1	lncRNA	lncRNA	lncRNA	lncRNA	120	2698	2	2.21496	2.519495	2.82403	0.00881383	0.0077167	0.0631671	0.0568466
chr1	20775271	20775360	414133	0	-	0.41573	(0.39,0.419]	chr1	48420	4	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000419948.5:ENST00000424732.5:ENST00000417710.5	protein_coding	protein_coding	protein_coding	protein_coding	6	138	2	2.21962	2.519125	2.81863	0.0393287	0.0308057	0.13249	0.127601
chr9	91349607	91349706	4333939	0	-	0.444444	(0.419,0.45]	chr9	414018	60	INTRON	INTRON	AUH	ENSG00000148090.12	ENST00000303617.5:ENST00000375731.9:ENST00000478465.5:ENST00000475023.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	76	2	2.1235	2.519025	2.91455	0.0693342	0.06467	0.194077	0.162218
chr11	70656033	70656133	5060835	0	-	0.5	(0.485,0.523]	chr11	492672	12	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	81	2	1.89919	2.518905	3.13862	0.0679216	0.0398026	0.193274	0.133884
chr1	17669889	17669989	54910	0	+	0.66	(0.58,1]	chr1	5603	49	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	94	2	1.90424	2.5189	3.13356	0.091076	0.00559148	0.187711	0.0460395
chr11	587664	587764	4784894	0	+	0.6	(0.58,1]	chr11	457993	2	SS5_PROX	SS5_PROX:INTRON	PHRF1	ENSG00000070047.13	ENST00000264555.10:ENST00000416188.3:ENST00000534320.5:ENST00000413872.6:ENST00000533464.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	43	2	2.40217	2.51871	2.63525	0.100879	0.0459151	0.196131	0.154743
chr16	81631083	81631183	6509608	0	+	0.49	(0.485,0.523]	chr16	645926	90	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	2.33451	2.51849	2.70247	0.0759932	0.0426546	0.174411	0.149802
chr2	186358052	186358152	1340887	0	-	0.36	(0.33,0.36]	chr2	142335	318	INTRON	INTRON	LINC01473	ENSG00000237877.7	ENST00000667056.1:ENST00000671599.1	lncRNA	lncRNA	lncRNA	lncRNA	5	96	2	2.10656	2.5173449999999997	2.92813	0.0577575	0.0377692	0.154343	0.140404
chr3	188264252	188264352	1652901	0	+	0.45	(0.419,0.45]	chr3	173754	237	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	5	102	2	2.03149	2.51689	3.00229	0.0572793	0.0463635	0.15595	0.154343
chr6	2112772	2112872	3084007	0	-	0.54	(0.523,0.58]	chr6	299503	695	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5	protein_coding	protein_coding	protein_coding	protein_coding	4	80	2	2.45602	2.516845	2.57767	0.090356	0.021252	0.186369	0.104314
chr17	82627491	82627591	6989733	0	-	0.64	(0.58,1]	chr17	715026	2	SS3_PROX	SS3_PROX:INTRON	WDR45B	ENSG00000141580.16	ENST00000392325.9:ENST00000572583.5:ENST00000571835.5:ENST00000573616.5:ENST00000571817.5:ENST00000574828.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	100	2	1.78029	2.5168049999999997	3.25332	0.0833655	0.0120565	0.180939	0.0754623
chr2	118099078	118099177	882794	0	+	0.282828	[0,0.29]	chr2	99952	19	INTRON	INTRON	INSIG2	ENSG00000125629.16	ENST00000411929.5:ENST00000245787.9:ENST00000485520.5:ENST00000471186.5:ENST00000467223.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	176	2	2.17437	2.5166250000000003	2.85888	0.0397531	0.00758864	0.133793	0.0561937
chr17	17823536	17823607	6865757	0	-	0.760563	(0.58,1]	chr17	695919	1	CDS	CDS:UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	2	44	2	2.47204	2.516445	2.56085	0.0803939	0.0623526	0.181127	0.177452
chr15	65782542	65782641	6306168	0	-	0.373737	(0.36,0.39]	chr15	621805	153	INTRON	INTRON	DENND4A	ENSG00000174485.16	ENST00000443035.8:ENST00000431932.6:ENST00000564674.5:ENST00000568515.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	73	2	2.15686	2.51534	2.87382	0.0653866	0.0642245	0.184676	0.162385
chr6	142435937	142436036	3013247	0	+	0.464646	(0.45,0.485]	chr6	294811	155	INTRON	INTRON	ADGRG6	ENSG00000112414.15	ENST00000230173.10:ENST00000367608.6:ENST00000296932.13:ENST00000367609.8:ENST00000472054.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	83	2	1.9378	2.515185	3.09257	0.0646604	0.0447818	0.185606	0.140478
chrX	133944050	133944150	8115608	0	-	0.29	[0,0.29]	chrX	845529	1091	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	101	2	1.79818	2.51458	3.23098	0.0481049	0.0280603	0.159496	0.113726
chr20	58651911	58652006	7498178	0	+	0.6	(0.58,1]	chr20	781916	8	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	STX16:STX16-NPEPL1	ENSG00000124222.22:ENSG00000254995.4	ENST00000361830.7:ENST00000355957.9:ENST00000458280.5:ENST00000312283.12:ENST00000412911.5:ENST00000371141.8:ENST00000359617.8:ENST00000460655.5:ENST00000476384.5:ENST00000483434.5:ENST00000496117.5:ENST00000490700.5:ENST00000530122.1:ENST00000371132.8:ENST00000496003.5:ENST00000467096.5:ENST00000358029.8	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	167	2	1.61013	2.514335	3.41854	0.0499089	0.00841183	0.161301	0.0616845
chr6	160068657	160068744	3066301	0	+	0.517241	(0.485,0.523]	chr6	298073	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	91	2	2.35971	2.5140200000000004	2.66833	0.0702693	0.0211923	0.168159	0.104042
chr10	100969924	100970024	4569821	0	+	0.66	(0.58,1]	chr10	436224	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SEMA4G	ENSG00000095539.15	ENST00000519649.5:ENST00000521006.5:ENST00000518124.5:ENST00000518244.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	113	2	2.2681	2.5139750000000003	2.75985	0.0503853	0.00845983	0.148216	0.06064
chr14	19097698	19097798	5754317	0	+	0.75	(0.58,1]	chr14	564239	39	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000619938.1:ENST00000644980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	78	2	2.32207	2.51356	2.70505	0.0631758	0.0165599	0.161352	0.0917029
chr1	42178222	42178321	454952	0	-	0.434343	(0.419,0.45]	chr1	54686	18	UTR3	UTR3:EXON_MRNA	FOXJ3	ENSG00000198815.9	ENST00000372573.5:ENST00000372572.5:ENST00000372571.5:ENST00000361776.5:ENST00000545068.5:ENST00000361346.6	protein_coding	protein_coding	protein_coding	protein_coding	3	74	2	2.30548	2.51336	2.72124	0.0837482	0.04996	0.181508	0.161395
chr18	23548408	23548508	7132151	0	-	0.45	(0.419,0.45]	chr18	725747	3	SS3_PROX	SS3_PROX:INTRON	NPC1	ENSG00000141458.13	ENST00000269228.10:ENST00000591051.1:ENST00000540608.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	74	2	2.30548	2.51336	2.72124	0.0837482	0.04996	0.181508	0.161395
chr11	120212297	120212393	4950882	0	+	0.572917	(0.523,0.58]	chr11	478299	4	INTRON	INTRON	OAF	ENSG00000184232.9	ENST00000328965.9:ENST00000531220.1	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	2.24954	2.513045	2.77655	0.0685533	0.0500176	0.165066	0.161481
chr16	23467589	23467689	6568574	0	-	0.52	(0.485,0.523]	chr16	655372	1	CDS_STOP	CDS_STOP:CDS:EXON_MRNA:INTRON	GGA2	ENSG00000103365.15	ENST00000309859.8:ENST00000567468.5:ENST00000568922.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	50	2	2.49197	2.512125	2.53228	0.10114	0.0614918	0.196131	0.18013
chr7	47498017	47498117	3588792	0	-	0.51	(0.485,0.523]	chr7	346132	165	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	2	50	2	2.49197	2.512125	2.53228	0.10114	0.0614918	0.196131	0.18013
chr17	81999645	81999745	6815293	0	+	0.64	(0.58,1]	chr17	688640	24	INTRON	INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	79	2	2.23143	2.5116050000000003	2.79178	0.0565563	0.0229637	0.154343	0.109418
chr14	39274050	39274149	5792242	0	+	0.272727	[0,0.29]	chr14	567494	62	INTRON	INTRON	MIA2	ENSG00000150527.18	ENST00000553728.1:ENST00000640607.2:ENST00000554392.5:ENST00000555716.5:ENST00000341749.7:ENST00000557038.5:ENST00000396165.8:ENST00000556990.1:ENST00000396158.6:ENST00000280083.7:ENST00000341502.9:ENST00000556148.5:ENST00000348007.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	92	2	1.73105	2.511195	3.29134	0.0623589	0.0252424	0.181142	0.108073
chr3	15442020	15442119	1417824	0	+	0.313131	(0.29,0.33]	chr3	152331	30	UTR3	UTR3:EXON_MRNA:INTRON	EAF1	ENSG00000144597.14	ENST00000396842.7:ENST00000617675.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	65	2	2.40711	2.511065	2.61502	0.083721	0.0373223	0.181508	0.139793
chr2	101762924	101763024	861285	0	+	0.46	(0.45,0.485]	chr2	97528	640	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.28891	2.510835	2.73276	0.0754102	0.0479351	0.173278	0.159092
chr11	70783353	70783453	5062115	0	-	0.59	(0.58,1]	chr11	492701	655	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	79	2	2.44544	2.510015	2.57459	0.0516128	0.0224622	0.148503	0.108193
chr2	235503241	235503341	1062628	0	+	0.54	(0.523,0.58]	chr2	115651	80	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	123	2	2.48549	2.5093	2.53311	0.0582885	0.0131299	0.155373	0.0788835
chr1	52919704	52919804	485632	0	-	0.5	(0.485,0.523]	chr1	57740	17	INTRON	INTRON	ECHDC2	ENSG00000121310.17	ENST00000536120.5:ENST00000371522.9:ENST00000460612.5:ENST00000371520.5:ENST00000358358.9:ENST00000476477.6:ENST00000467988.2:ENST00000488268.5:ENST00000544365.5:ENST00000495920.5:ENST00000544531.5:ENST00000480312.6:ENST00000542552.1:ENST00000474789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	71	2	2.21906	2.50884	2.79862	0.0861655	0.0375966	0.181978	0.139924
chr17	72575863	72575963	6964070	0	-	0.6	(0.58,1]	chr17	710393	11	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1	lncRNA	lncRNA	lncRNA	lncRNA	5	78	2	2.10224	2.50835	2.91446	0.0464528	0.0310606	0.143232	0.127822
chr2	237585006	237585105	1388096	0	-	0.525253	(0.523,0.58]	chr2	148327	56	INTRON	INTRON	RAB17	ENSG00000124839.13	ENST00000392001.6:ENST00000264601.8:ENST00000409576.1:ENST00000414278.1:ENST00000409822.1:ENST00000411462.5:ENST00000430445.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	292	2	2.36236	2.5082	2.65404	0.0261999	0.018669	0.117385	0.0934313
chr9	123460342	123460440	4397177	0	-	0.489796	(0.485,0.523]	chr9	419644	21	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1:ENST00000479305.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	66	2	2.23742	2.508095	2.77877	0.0682166	0.0515447	0.165949	0.164526
chr7	44797718	44797814	3368927	0	+	0.354167	(0.33,0.36]	chr7	325037	9	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	PPIA	ENSG00000196262.15	ENST00000451562.5:ENST00000481437.5:ENST00000479021.1:ENST00000468812.6:ENST00000676977.1:ENST00000677107.1:ENST00000355968.10:ENST00000489459.5:ENST00000415933.5:ENST00000620047.5:ENST00000678643.1:ENST00000677521.1:ENST00000678789.1:ENST00000678165.1:ENST00000677022.1:ENST00000678805.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	83	2	2.12031	2.50795	2.89559	0.0605295	0.0467883	0.158506	0.156817
chr21	37083451	37083549	7617513	0	+	0.387755	(0.36,0.39]	chr21	795681	20	UTR5	UTR5:EXON_MRNA:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2:ENST00000399017.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	100	2	2.44026	2.5076099999999997	2.57496	0.0685343	0.0288176	0.165066	0.123783
chr4	82371027	82371127	2265328	0	-	0.33	(0.29,0.33]	chr4	228230	1	SS5_PROX	SS5_PROX:INTRON	HNRNPD	ENSG00000138668.19	ENST00000313899.12:ENST00000353341.8:ENST00000352301.8:ENST00000513584.1:ENST00000509263.5:ENST00000507010.5:ENST00000515432.1:ENST00000503822.1:ENST00000509107.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	65	2	2.48102	2.50732	2.53362	0.100436	0.0287513	0.196131	0.123764
chr7	47473109	47473209	3588539	0	-	0.42	(0.419,0.45]	chr7	346123	200	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	5	122	2	2.47244	2.505755	2.53907	0.0623516	0.0240615	0.16028	0.112363
chr14	89402661	89402761	6028134	0	-	0.5	(0.485,0.523]	chr14	591472	11	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000556916.5:ENST00000554005.1:ENST00000555855.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	80	2	1.89919	2.504285	3.10938	0.0679216	0.0416572	0.193274	0.136301
chr17	75688976	75689075	6799495	0	+	0.616162	(0.58,1]	chr17	685907	168	INTRON	INTRON	SAP30BP	ENSG00000161526.15	ENST00000583170.5:ENST00000584667.6:ENST00000355423.7:ENST00000578354.5:ENST00000577292.5:ENST00000542343.5:ENST00000579877.5:ENST00000293208.13:ENST00000579864.5:ENST00000583737.5:ENST00000578288.5:ENST00000580484.5:ENST00000582022.5:ENST00000580322.5:ENST00000583536.5:ENST00000578909.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	58	2	2.09276	2.50361	2.91446	0.0619333	0.0464528	0.180615	0.143232
chr8	23041939	23042038	3954733	0	-	0.545455	(0.523,0.58]	chr8	377503	107	INTRON	INTRON	TNFRSF10B	ENSG00000120889.13	ENST00000276431.9:ENST00000347739.3:ENST00000523504.5:ENST00000519910.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	65	2	2.34664	2.50359	2.66054	0.0806884	0.0413259	0.177452	0.148318
chr16	81546281	81546381	6508756	0	+	0.61	(0.58,1]	chr16	645911	504	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	6	96	2	1.65621	2.50336	3.35051	0.101488	0.00953058	0.196431	0.0650078
chr16	50598298	50598397	6451910	0	+	0.434343	(0.419,0.45]	chr16	639902	397	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	122	2	2.18453	2.503145	2.82176	0.101185	0.0110708	0.196131	0.0714644
chr14	89336654	89336753	6027469	0	-	0.333333	(0.33,0.36]	chr14	591456	30	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	114	2	2.21537	2.501935	2.7885	0.0901875	0.0109476	0.186259	0.0707236
chr11	96242895	96242995	5112565	0	-	0.35	(0.33,0.36]	chr11	496566	1490	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	4	96	2	2.42622	2.50143	2.57664	0.0668081	0.0278327	0.16272	0.120995
chr16	87741535	87741630	6656497	0	-	0.557895	(0.523,0.58]	chr16	665896	7	INTRON	INTRON	KLHDC4	ENSG00000104731.14	ENST00000567298.5:ENST00000270583.10:ENST00000347925.9:ENST00000353170.9:ENST00000316853.10:ENST00000566349.5:ENST00000562155.5:ENST00000622456.4:ENST00000562261.1:ENST00000566661.5:ENST00000564484.5:ENST00000565328.5:ENST00000569747.5:ENST00000564396.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	2	50	2	2.46839	2.501385	2.53438	0.0957531	0.0683019	0.193274	0.189038
chr16	85591727	85591827	6518990	0	+	0.43	(0.419,0.45]	chr16	646396	350	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	3	73	2	2.38853	2.501225	2.61392	0.0961463	0.0427256	0.189169	0.15001
chr19	34391795	34391895	7243268	0	+	0.46	(0.45,0.485]	chr19	741718	98	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	384	2	2.039	2.500895	2.96279	0.0240244	0.0121822	0.112203	0.0751482
chr17	6691807	6691899	6845987	0	-	0.576087	(0.523,0.58]	chr17	693296	5	INTRON	INTRON	SLC13A5	ENSG00000141485.17	ENST00000433363.7:ENST00000293800.10:ENST00000381074.8:ENST00000573648.5:ENST00000572727.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	179	2	1.96553	2.500685	3.03584	0.0396178	0.0168865	0.143388	0.088809
chr6	157311385	157311485	3298405	0	-	0.54	(0.523,0.58]	chr6	319197	180	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	5	107	2	2.48549	2.500365	2.51524	0.0582885	0.0185628	0.155373	0.0971472
chr2	3458861	3458961	711021	0	+	0.26	[0,0.29]	chr2	83175	4	SS5_PROX	SS5_PROX:INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000479955.5:ENST00000497597.5:ENST00000473348.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	72	2	2.28243	2.5003450000000003	2.71826	0.0648743	0.0299781	0.162218	0.126768
chr20	44359444	44359543	7482502	0	+	0.474747	(0.45,0.485]	chr20	779618	32	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000609262.5	protein_coding	protein_coding	protein_coding	protein_coding	6	103	2	1.85077	2.500055	3.14934	0.0523187	0.0410767	0.167062	0.136301
chr8	17967951	17968044	3764922	0	+	0.462366	(0.45,0.485]	chr8	361730	4	INTRON	INTRON	PCM1	ENSG00000078674.19	ENST00000325083.13:ENST00000519253.5:ENST00000524226.5	protein_coding	protein_coding	protein_coding	protein_coding	4	81	2	2.30281	2.498965	2.69512	0.0794176	0.0311884	0.176565	0.127822
chr22	24100622	24100719	7695367	0	+	0.587629	(0.58,1]	chr22	805517	20	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	146	2	1.456	2.4983	3.5406	0.0608709	0.0154024	0.17992	0.0849828
chr20	58682500	58682600	7498502	0	+	0.53	(0.523,0.58]	chr20	781977	31	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1:ENST00000413559.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	5	91	2	2.295	2.497625	2.70025	0.0763549	0.0230125	0.174544	0.109585
chr3	149181804	149181904	1939246	0	-	0.44	(0.419,0.45]	chr3	197326	4	SS5_PROX	SS5_PROX:INTRON	CP	ENSG00000047457.14	ENST00000481169.5:ENST00000264613.11:ENST00000494544.1:ENST00000490639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	81	2	2.28791	2.497585	2.7072600000000002	0.0882497	0.0496323	0.183874	0.160725
chr16	75096348	75096447	6492889	0	+	0.636364	(0.58,1]	chr16	645365	2	INTRON	INTRON	ZNRF1	ENSG00000186187.12	ENST00000335325.9:ENST00000320619.10:ENST00000567962.5:ENST00000566250.5:ENST00000564320.1:ENST00000568511.1:ENST00000579084.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	44	2	2.38295	2.4965200000000003	2.61009	0.0747426	0.0730701	0.199669	0.172361
chr16	87919358	87919457	6657559	0	-	0.666667	(0.58,1]	chr16	666059	141	INTRON	INTRON	CA5A	ENSG00000174990.8	ENST00000649158.1:ENST00000648177.1:ENST00000649794.3:ENST00000648022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.38295	2.4965200000000003	2.61009	0.0747426	0.0730701	0.199669	0.172361
chr19	948104	948204	7185327	0	+	0.69	(0.58,1]	chr19	730741	150	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	2	44	2	2.38295	2.4965200000000003	2.61009	0.0747426	0.0730701	0.199669	0.172361
chr8	122881129	122881229	3910657	0	+	0.6	(0.58,1]	chr8	373489	172	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6:ENST00000534247.1	protein_coding	protein_coding	protein_coding	protein_coding	4	80	2	2.43115	2.49512	2.55909	0.0425829	0.0309513	0.13762	0.127822
chr20	8462745	8462845	7429895	0	+	0.49	(0.485,0.523]	chr20	773698	907	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	239	2	1.95721	2.494795	3.03238	0.0322824	0.0136565	0.130088	0.0798119
chr3	66019898	66019998	1815681	0	-	0.53	(0.523,0.58]	chr3	187318	108	INTRON	INTRON	MAGI1	ENSG00000151276.24	ENST00000330909.12:ENST00000402939.7:ENST00000483466.5:ENST00000497477.6:ENST00000464060.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	78	2	2.03822	2.49476	2.9513	0.0531089	0.0516351	0.166192	0.149478
chr5	154858833	154858933	2572966	0	+	0.57	(0.523,0.58]	chr5	255683	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CNOT8	ENSG00000155508.14	ENST00000521174.5:ENST00000523270.1:ENST00000518782.5:ENST00000523698.5:ENST00000517876.5:ENST00000520472.5:ENST00000519211.5:ENST00000522458.5:ENST00000403027.6:ENST00000521450.5:ENST00000519903.5:ENST00000517568.5:ENST00000524105.5:ENST00000519430.5:ENST00000285896.11:ENST00000521583.5:ENST00000520671.5:ENST00000518028.5:ENST00000519404.5:ENST00000521729.5:ENST00000519394.5:ENST00000518775.5:ENST00000522644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	78	2	2.03822	2.49476	2.9513	0.0531089	0.0516351	0.166192	0.149478
chr6	158626351	158626448	3064570	0	+	0.402062	(0.39,0.419]	chr6	297758	2	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	3	72	2	2.15477	2.494185	2.8336	0.0695649	0.0645366	0.185295	0.167028
chr1	17682676	17682776	55038	0	+	0.57	(0.523,0.58]	chr1	5603	177	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5:ENST00000469726.5:ENST00000375408.7:ENST00000167825.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	90	2	2.3839	2.4939400000000003	2.60398	0.0679164	0.0241539	0.164413	0.112732
chr17	17828974	17829073	6865813	0	-	0.454545	(0.45,0.485]	chr17	695923	50	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8	protein_coding	protein_coding	protein_coding	protein_coding	6	136	2	2.36739	2.49369	2.61999	0.0545551	0.0154266	0.152594	0.0869771
chr3	188244860	188244960	1652707	0	+	0.36	(0.33,0.36]	chr3	173754	43	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	4	84	2	2.46513	2.493575	2.52202	0.100822	0.0228631	0.196131	0.108967
chr2	235513232	235513332	1062728	0	+	0.6	(0.58,1]	chr2	115651	180	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	56	2	2.32693	2.492315	2.6577	0.0695799	0.038688	0.167028	0.142489
chr2	222864092	222864189	1037731	0	+	0.443299	(0.419,0.45]	chr2	113175	20	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	73	2	2.26209	2.4916650000000002	2.72124	0.0837482	0.0541225	0.181508	0.167824
chrX	278987	279087	7829047	0	+	0.52	(0.485,0.523]	chrX	821846	22	INTRON	INTRON	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000484611.7:ENST00000430923.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	124	2	2.3794400000000002	2.491525	2.60361	0.0541523	0.0427157	0.167824	0.13762
chr10	79069969	79070069	4532054	0	+	0.6	(0.58,1]	chr10	432420	3	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.47204	2.4909549999999996	2.50987	0.0865901	0.0623526	0.182221	0.181127
chr13	112696431	112696531	5652604	0	+	0.64	(0.58,1]	chr13	554894	56	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5	protein_coding	protein_coding	protein_coding	protein_coding	2	43	2	2.47204	2.4909549999999996	2.50987	0.0865901	0.0623526	0.182221	0.181127
chr2	62894263	62894363	815853	0	+	0.37	(0.36,0.39]	chr2	92141	126	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding	6	141	2	2.02482	2.49045	2.95608	0.0951615	0.00770898	0.189038	0.0567947
chr1	43595667	43595766	107407	0	+	0.535354	(0.523,0.58]	chr1	13240	27	INTRON	INTRON	PTPRF	ENSG00000142949.17	ENST00000359947.9:ENST00000438120.5:ENST00000412568.6:ENST00000429895.5:ENST00000414879.5	protein_coding	protein_coding	protein_coding	protein_coding	4	88	2	2.12522	2.4904450000000002	2.85567	0.0984283	0.0136981	0.192982	0.0814223
chr12	26826793	26826893	5401538	0	-	0.49	(0.485,0.523]	chr12	528741	362	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8:ENST00000545235.1:ENST00000242737.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	79	2	1.89919	2.4893549999999998	3.07952	0.0679216	0.0436257	0.193274	0.139286
chr2	54618693	54618788	799907	0	+	0.505263	(0.485,0.523]	chr2	90830	1	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7:ENST00000333896.5	protein_coding	protein_coding	protein_coding	protein_coding	4	79	2	1.89919	2.4893549999999998	3.07952	0.0679216	0.0436257	0.193274	0.139286
chr13	42320506	42320605	5579246	0	+	0.606061	(0.58,1]	chr13	550311	14	UTR3	UTR3:EXON_MRNA	AKAP11	ENSG00000023516.9	ENST00000025301.4	protein_coding	protein_coding	protein_coding	protein_coding	4	76	2	2.11464	2.48855	2.86246	0.0873232	0.0112778	0.183238	0.0717097
chr10	100553020	100553120	4569196	0	+	0.64	(0.58,1]	chr10	436105	50	UTR3	UTR3:EXON_MRNA	HIF1AN	ENSG00000166135.14	ENST00000299163.7	protein_coding	protein_coding	protein_coding	protein_coding	3	56	2	2.27185	2.487825	2.7038	0.0648563	0.0433824	0.162218	0.152119
chr9	123526291	123526391	4397839	0	-	0.58	(0.523,0.58]	chr9	419652	403	INTRON	INTRON	DENND1A	ENSG00000119522.17	ENST00000373624.6:ENST00000473039.5:ENST00000394215.7:ENST00000373620.7:ENST00000491650.5:ENST00000497135.5:ENST00000373618.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	65	2	2.19842	2.487485	2.77655	0.0685533	0.0551586	0.169218	0.165066
chr7	23415468	23415565	3552656	0	-	0.670103	(0.58,1]	chr7	343216	24	EXON_MRNA	EXON_MRNA:INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5:ENST00000468005.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	92	2	2.4147	2.4868949999999996	2.55909	0.0425829	0.020116	0.13762	0.101405
chr14	30921404	30921504	5950942	0	-	0.36	(0.33,0.36]	chr14	583071	19	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000366206.2:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	156	2	2.21803	2.4859400000000003	2.75385	0.0406145	0.0216673	0.135868	0.1059
chr6	157310785	157310885	3298399	0	-	0.59	(0.58,1]	chr6	319197	174	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	19	277	2	1.74664	2.48474	3.22284	0.0300264	0.00630246	0.126768	0.0524017
chr2	239348780	239348880	1392198	0	-	0.46	(0.45,0.485]	chr2	148752	243	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	80	2	2.09504	2.484615	2.87419	0.061784	0.0477581	0.158872	0.1588
chr7	47362089	47362188	3587412	0	-	0.626263	(0.58,1]	chr7	346030	154	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	4	76	2	2.22208	2.48406	2.74604	0.074035	0.015009	0.171168	0.0852854
chr2	177219992	177220092	962497	0	+	0.31	(0.29,0.33]	chr2	105565	8	UTR3	UTR3:EXON_MRNA:INTRON	HNRNPA3	ENSG00000170144.21	ENST00000392524.6:ENST00000679159.1:ENST00000678111.1:ENST00000678421.1:ENST00000677863.1:ENST00000676681.1:ENST00000676629.1:ENST00000677337.1:ENST00000676488.1:ENST00000677043.1:ENST00000676874.1:ENST00000676762.1:ENST00000411529.6:ENST00000676736.1:ENST00000483137.2:ENST00000677508.1:ENST00000679328.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	98	2	1.73584	2.4832099999999997	3.23058	0.064679	0.0331025	0.185657	0.123313
chr14	39271481	39271579	5792216	0	+	0.316327	(0.29,0.33]	chr14	567494	36	INTRON	INTRON	MIA2	ENSG00000150527.18	ENST00000553728.1:ENST00000640607.2:ENST00000554392.5:ENST00000555716.5:ENST00000341749.7:ENST00000557038.5:ENST00000396165.8:ENST00000556990.1:ENST00000396158.6:ENST00000280083.7:ENST00000341502.9:ENST00000556148.5:ENST00000348007.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	134	2	2.1529	2.483135	2.81337	0.0332423	0.0269029	0.12369	0.119205
chr20	8455746	8455846	7429825	0	+	0.49	(0.485,0.523]	chr20	773698	837	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	170	2	2.27974	2.482915	2.68609	0.0502497	0.00912813	0.148161	0.0632458
chr11	65438450	65438550	4871726	0	+	0.41	(0.39,0.419]	chr11	468177	158	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	36	890	2	2.32122	2.482735	2.64425	0.0180922	0.0100384	0.0921579	0.0670367
chr17	15468418	15468518	6860119	0	-	0.54	(0.523,0.58]	chr17	695071	9	INTRON	INTRON	TVP23C-CDRT4:CDRT4	ENSG00000259024.6:ENSG00000239704.11	ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	146	2	2.26663	2.4827250000000003	2.69882	0.061194900000000003	0.00870551	0.158506	0.0612699
chr2	19997655	19997754	1096404	0	-	0.393939	(0.39,0.419]	chr2	119554	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	MATN3	ENSG00000132031.13	ENST00000407540.8:ENST00000421259.2:ENST00000478482.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	129	2	1.83499	2.4825049999999997	3.13002	0.0466891	0.0456475	0.156571	0.142336
chr1	94421440	94421540	186881	0	+	0.27	[0,0.29]	chr1	20287	21	INTRON	INTRON	ABCD3	ENSG00000117528.14	ENST00000370214.9:ENST00000647998.2:ENST00000315713.5:ENST00000468860.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	97	2	1.92905	2.482345	3.03564	0.0893815	0.00837506	0.184834	0.0600528
chr15	67067691	67067784	6139092	0	+	0.516129	(0.485,0.523]	chr15	603930	10	INTRON	INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	2.0783	2.48222	2.88614	0.0693	0.0583792	0.194071	0.155373
chr2	235514831	235514931	1062744	0	+	0.5	(0.485,0.523]	chr2	115651	196	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	66	2	2.0783	2.48222	2.88614	0.0693	0.0583792	0.194071	0.155373
chr6	144627167	144627267	3023339	0	+	0.51	(0.485,0.523]	chr6	295440	432	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000367526.8	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	2.0783	2.48222	2.88614	0.0693	0.0583792	0.194071	0.155373
chr15	52777600	52777700	6267294	0	-	0.44	(0.419,0.45]	chr15	617751	194	INTRON	INTRON	ONECUT1	ENSG00000169856.9	ENST00000305901.7:ENST00000561401.3:ENST00000560699.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	134	2	2.46706	2.481535	2.49601	0.0506262	0.0367089	0.148503	0.139793
chr6	161069818	161069914	3069177	0	+	0.635417	(0.58,1]	chr6	298394	22	INTRON	INTRON	MAP3K4	ENSG00000085511.20	ENST00000366919.6:ENST00000392142.9:ENST00000542952.5:ENST00000366920.6:ENST00000348824.11:ENST00000544041.5:ENST00000490904.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	56	2	2.21459	2.481525	2.74846	0.0605281	0.0487458	0.160725	0.158506
chr2	62894763	62894863	815858	0	+	0.52	(0.485,0.523]	chr2	92141	131	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding	14	300	2	2.23906	2.48118	2.7233	0.0187744	0.015229	0.0937491	0.0862906
chr17	62062766	62062866	6943714	0	-	0.4	(0.39,0.419]	chr17	708045	3	SS5_PROX	SS5_PROX:INTRON	MED13	ENSG00000108510.10	ENST00000397786.7	protein_coding	protein_coding	protein_coding	protein_coding	5	97	2	1.85879	2.48088	3.10297	0.0633599	0.0474927	0.18377	0.144137
chr19	54459982	54460080	7292469	0	+	0.642857	(0.58,1]	chr19	750774	12	UTR3	UTR3:EXON_MRNA:INTRON	LENG8	ENSG00000167615.17	ENST00000616932.4:ENST00000326764.10:ENST00000376514.6:ENST00000610347.1:ENST00000421200.1	protein_coding	protein_coding	protein_coding	protein_coding	6	104	2	2.32126	2.480035	2.63881	0.0370835	0.0184756	0.12995	0.096739
chr13	98279798	98279898	5635029	0	+	0.55	(0.523,0.58]	chr13	553480	346	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	4	90	2	2.43559	2.47939	2.52319	0.0628646	0.0287266	0.160778	0.123764
chr11	70538030	70538130	5059653	0	-	0.64	(0.58,1]	chr11	492663	347	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.40217	2.479065	2.55596	0.100879	0.0534085	0.196131	0.167062
chr20	62889267	62889364	7585202	0	-	0.731959	(0.58,1]	chr20	792848	22	UTR3	UTR3:EXON_MRNA:INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.40217	2.479065	2.55596	0.100879	0.0534085	0.196131	0.167062
chr22	46214772	46214872	7742717	0	+	0.62	(0.58,1]	chr22	811778	2	SS3_PROX	SS3_PROX:INTRON	PPARA	ENSG00000186951.17	ENST00000407236.6:ENST00000420804.5:ENST00000402126.1:ENST00000493286.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.40217	2.479065	2.55596	0.100879	0.0534085	0.196131	0.167062
chr7	214664	214764	3305801	0	+	0.59	(0.58,1]	chr7	320161	53	INTRON	INTRON	FAM20C	ENSG00000177706.9	ENST00000313766.6	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.40217	2.479065	2.55596	0.100879	0.0534085	0.196131	0.167062
chr3	48424511	48424611	1766676	0	-	0.64	(0.58,1]	chr3	182273	1	CDS_START	CDS_START:CDS:EXON_MRNA:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000456774.5:ENST00000449094.5:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	132	2	2.34237	2.477735	2.6131	0.0360611	0.0123529	0.127853	0.0764248
chr10	28560132	28560232	4469686	0	+	0.4	(0.39,0.419]	chr10	427649	217	INTRON	INTRON	WAC	ENSG00000095787.24	ENST00000680735.1:ENST00000375664.8:ENST00000428935.6:ENST00000651598.1:ENST00000628285.3:ENST00000681112.1:ENST00000679570.1:ENST00000375646.5:ENST00000354911.9:ENST00000347934.8:ENST00000420266.6:ENST00000651885.1:ENST00000651441.1:ENST00000679398.1:ENST00000424454.5:ENST00000442148.6:ENST00000448193.5:ENST00000414108.6:ENST00000679428.1:ENST00000439676.5:ENST00000345541.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	71	2	2.15477	2.4775400000000003	2.80031	0.0728013	0.0645366	0.185295	0.169397
chr15	25015120	25015220	6064004	0	+	0.34	(0.33,0.36]	chr15	595413	119	INTRON	INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1	lncRNA	lncRNA	lncRNA	lncRNA	5	93	2	1.90113	2.476275	3.05142	0.0570321	0.0481968	0.173555	0.144601
chr16	89297672	89297772	6659782	0	-	0.61	(0.58,1]	chr16	666648	55	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	67	2	2.342	2.476045	2.61009	0.0747426	0.023878	0.172361	0.111721
chrX	129457030	129457130	8099530	0	-	0.47	(0.45,0.485]	chrX	844596	82	INTRON	INTRON	SMARCA1	ENSG00000102038.16	ENST00000617310.4:ENST00000371122.8:ENST00000371121.5:ENST00000371123.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	122	2	2.46542	2.4756099999999996	2.4858	0.0453181	0.0337868	0.141989	0.133182
chr8	22388656	22388756	3770235	0	+	0.57	(0.523,0.58]	chr8	362727	88	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	10	191	2	2.46524	2.4745749999999997	2.48391	0.0433791	0.00935969	0.138813	0.0646536
chr16	22020991	22021091	6420231	0	+	0.47	(0.45,0.485]	chr16	634977	122	INTRON	INTRON	MOSMO	ENSG00000185716.12	ENST00000567004.1:ENST00000542527.7:ENST00000331057.8:ENST00000569656.5:ENST00000562695.1:ENST00000562186.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	66	2	2.28891	2.47269	2.65647	0.0837071	0.0479351	0.181508	0.159092
chr14	23309442	23309538	5756463	0	+	0.520833	(0.485,0.523]	chr14	564868	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	BCL2L2:BCL2L2-PABPN1	ENSG00000129473.11:ENSG00000258643.6	ENST00000679219.1:ENST00000678311.1:ENST00000678502.1:ENST00000250405.10:ENST00000557579.2:ENST00000553781.5:ENST00000679000.1:ENST00000556100.3:ENST00000557008.2:ENST00000556599.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	105	2	2.27698	2.47202	2.66706	0.0793007	0.0131603	0.176433	0.079027
chr17	6692543	6692643	6845995	0	-	0.36	(0.33,0.36]	chr17	693297	1	SS5_PROX	SS5_PROX:INTRON	SLC13A5	ENSG00000141485.17	ENST00000433363.7:ENST00000293800.10:ENST00000381074.8:ENST00000573648.5:ENST00000572727.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	99	2	2.28913	2.47091	2.65269	0.0492629	0.0475449	0.160725	0.144291
chr21	37073573	37073673	7617413	0	+	0.66	(0.58,1]	chr21	795679	1	SS5_PROX	SS5_PROX:INTRON	TTC3	ENSG00000182670.14	ENST00000492275.6:ENST00000418766.6:ENST00000485402.5:ENST00000450533.6:ENST00000438055.5:ENST00000696812.1:ENST00000696811.1:ENST00000463216.6:ENST00000481605.6:ENST00000540756.5:ENST00000494243.5:ENST00000399010.5:ENST00000411496.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	115	2	2.13141	2.47036	2.80931	0.0273431	0.0236904	0.112372	0.111208
chr4	10100726	10100825	2195657	0	-	0.555556	(0.523,0.58]	chr4	222412	12	INTRON	INTRON	WDR1	ENSG00000071127.17	ENST00000499869.7:ENST00000382451.6:ENST00000382452.6:ENST00000502702.5:ENST00000508079.1:ENST00000264785.11:ENST00000505851.5:ENST00000514319.5:ENST00000515018.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	77	2	2.36236	2.470015	2.57767	0.090356	0.0261999	0.186369	0.117385
chr12	48936308	48936405	5423599	0	-	0.515464	(0.485,0.523]	chr12	531642	7	UTR3	UTR3:EXON_MRNA	ARF3	ENSG00000134287.10	ENST00000256682.9	protein_coding	protein_coding	protein_coding	protein_coding	7	147	2	2.0363	2.46997	2.90364	0.08631	0.00522094	0.182221	0.0442244
chr9	129502160	129502250	4250799	0	+	0.577778	(0.523,0.58]	chr9	404729	2	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS3_PROX:SS5_PROX:INTRON	LINC00963	ENSG00000204054.14	ENST00000653047.1:ENST00000454968.5:ENST00000652803.1:ENST00000444184.6:ENST00000658785.1:ENST00000656664.1:ENST00000666282.1:ENST00000663727.1:ENST00000663000.1:ENST00000666041.1:ENST00000657306.1:ENST00000668074.1:ENST00000656234.1:ENST00000662331.1:ENST00000654822.1:ENST00000659188.1:ENST00000658175.1:ENST00000654204.1:ENST00000659535.1:ENST00000653700.1:ENST00000667047.1:ENST00000665998.1:ENST00000664811.1:ENST00000665880.1:ENST00000662047.1:ENST00000671609.1:ENST00000671555.1:ENST00000655787.1:ENST00000419300.3:ENST00000423918.5:ENST00000661101.1:ENST00000666559.1:ENST00000668919.1:ENST00000654131.1:ENST00000653386.1:ENST00000655962.1:ENST00000659690.1:ENST00000657389.1:ENST00000668206.1:ENST00000669088.1:ENST00000654286.1:ENST00000658999.1:ENST00000624138.4:ENST00000454635.6:ENST00000625171.4:ENST00000624390.1:ENST00000622972.3:ENST00000624009.3:ENST00000669210.1:ENST00000412141.2:ENST00000622680.2:ENST00000622120.2:ENST00000607931.1:ENST00000453213.2:ENST00000608272.2:ENST00000623185.4:ENST00000669939.1:ENST00000427778.1:ENST00000608669.1	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	3	64	2	2.19842	2.46866	2.7389	0.072318	0.0551586	0.169218	0.168347
chr11	65430162	65430262	4871643	0	+	0.6	(0.58,1]	chr11	468177	75	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	103	2022	2	2.41232	2.4684	2.52448	0.0100922	0.00346949	0.0679478	0.0336036
chr19	951596	951695	7185362	0	+	0.646465	(0.58,1]	chr19	730741	185	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	178	2	2.10605	2.4678950000000004	2.82974	0.0435345	0.00484486	0.139245	0.0418342
chr10	102650375	102650474	4576528	0	+	0.616162	(0.58,1]	chr10	437284	7	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1:ENST00000487927.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	78	2	2.43115	2.46727	2.50339	0.0468259	0.0309513	0.143232	0.127822
chr2	219550039	219550131	1036476	0	+	0.576087	(0.523,0.58]	chr2	112991	3	UTR3	UTR3:EXON_MRNA	TMEM198	ENSG00000188760.11	ENST00000344458.6:ENST00000373883.4	protein_coding	protein_coding	protein_coding	protein_coding	5	124	2	2.39069	2.467065	2.54344	0.0599121	0.0420356	0.177269	0.137337
chr21	45444033	45444132	7630703	0	+	0.666667	(0.58,1]	chr21	797656	382	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1	protein_coding	protein_coding	protein_coding	protein_coding	3	59	2	2.15135	2.466605	2.78186	0.0825864	0.0342923	0.179396	0.13449
chr20	62953212	62953272	7508227	0	+	0.616667	(0.58,1]	chr20	783167	2	CDS_START	CDS_START:CDS:UTR5:EXON_MRNA:SS5_PROX:INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5:ENST00000411611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	74	2	2.01789	2.4664099999999998	2.91493	0.0762182	0.0259506	0.174484	0.116361
chr3	149181120	149181216	1939239	0	-	0.5	(0.485,0.523]	chr3	197325	11	INTRON	INTRON	CP	ENSG00000047457.14	ENST00000481169.5:ENST00000264613.11:ENST00000494544.1:ENST00000490639.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	124	2	2.28678	2.466055	2.64533	0.046853	0.0331525	0.156896	0.123392
chr11	96295488	96295588	5113091	0	-	0.42	(0.419,0.45]	chr11	496566	2016	INTRON	INTRON	MAML2	ENSG00000184384.14	ENST00000524717.6	protein_coding	protein_coding	protein_coding	protein_coding	4	102	2	2.16612	2.46526	2.7644	0.0814922	0.0447981	0.178638	0.154539
chr1	2229935	2230035	4509	0	+	0.71	(0.58,1]	chr1	1043	2	SS5_PROX	SS5_PROX:INTRON	SKI	ENSG00000157933.10	ENST00000378536.5	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.27185	2.4647750000000004	2.6577	0.0695799	0.0433824	0.167028	0.152119
chr16	81494449	81494549	6508236	0	+	0.62	(0.58,1]	chr16	645906	486	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.27185	2.4647750000000004	2.6577	0.0695799	0.0433824	0.167028	0.152119
chr16	87919258	87919358	6657558	0	-	0.64	(0.58,1]	chr16	666059	140	INTRON	INTRON	CA5A	ENSG00000174990.8	ENST00000649158.1:ENST00000648177.1:ENST00000649794.3:ENST00000648022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	55	2	2.27185	2.4647750000000004	2.6577	0.0695799	0.0433824	0.167028	0.152119
chr6	157312084	157312184	3298412	0	-	0.59	(0.58,1]	chr6	319197	187	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	12	201	2	2.15887	2.46475	2.77063	0.0159608	0.0150779	0.0862974	0.0856714
chr2	96594047	96594145	1221320	0	-	0.612245	(0.58,1]	chr2	131940	10	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	KANSL3	ENSG00000114982.19	ENST00000354204.10:ENST00000431828.6:ENST00000487070.5:ENST00000447759.5:ENST00000420155.5:ENST00000670907.1:ENST00000666923.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	2	42	2	2.45703	2.4645349999999997	2.47204	0.0933945	0.0623526	0.188571	0.181127
chr22	38202423	38202516	7724315	0	+	0.83871	(0.58,1]	chr22	809111	3	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	MAFF	ENSG00000185022.12	ENST00000624676.1:ENST00000538999.1:ENST00000538320.5:ENST00000338483.7:ENST00000441709.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	2	42	2	2.45703	2.4645349999999997	2.47204	0.0933945	0.0623526	0.188571	0.181127
chr7	5323327	5323424	3535274	0	-	0.670103	(0.58,1]	chr7	341379	18	INTRON	INTRON	TNRC18	ENSG00000182095.15	ENST00000399537.8:ENST00000430969.6	protein_coding	protein_coding	protein_coding	protein_coding	2	42	2	2.45703	2.4645349999999997	2.47204	0.0933945	0.0623526	0.188571	0.181127
chr6	157313383	157313483	3298425	0	-	0.6	(0.58,1]	chr6	319197	200	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	9	106	2	1.6373	2.464515	3.29173	0.052875900000000003	0.0243429	0.167062	0.106588
chr6	154747712	154747812	3044255	0	+	0.32	(0.29,0.33]	chr6	296626	53	INTRON	INTRON	SCAF8	ENSG00000213079.10	ENST00000367186.7:ENST00000417268.3:ENST00000461219.5:ENST00000367178.8:ENST00000464628.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	132	2	2.24072	2.4641200000000003	2.68752	0.040907	0.0220334	0.136191	0.10754
chr10	103688138	103688238	4756977	0	-	0.5	(0.485,0.523]	chr10	454779	101	INTRON	INTRON	SH3PXD2A	ENSG00000107957.17	ENST00000355946.7:ENST00000369774.9:ENST00000315994.6:ENST00000692756.1:ENST00000687380.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	68	2	2.12759	2.463105	2.79862	0.0979672	0.0375966	0.192171	0.139924
chr2	179258881	179258981	1328350	0	-	0.28	[0,0.29]	chr2	141710	667	INTRON	INTRON	SESTD1	ENSG00000187231.14	ENST00000428443.8:ENST00000440010.5:ENST00000435047.5:ENST00000452991.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	58	2	2.25193	2.462765	2.6736	0.0694089	0.0483361	0.167028	0.159813
chr22	15817308	15817404	7682896	0	+	0.572917	(0.523,0.58]	chr22	803564	14	INTRON	INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000383038.7:ENST00000447898.5	lncRNA	lncRNA	lncRNA	lncRNA	3	63	2	2.34664	2.462155	2.57767	0.090356	0.0413259	0.186369	0.148318
chr11	18012401	18012501	5015383	0	-	0.6	(0.58,1]	chr11	484706	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SERGEF	ENSG00000129158.11	ENST00000265965.10:ENST00000525422.5:ENST00000527494.5:ENST00000528200.5:ENST00000532265.5:ENST00000529728.5:ENST00000530613.5:ENST00000532389.5:ENST00000530925.5:ENST00000533328.5:ENST00000532212.5:ENST00000524716.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	67	2	1.85952	2.461415	3.06331	0.0671431	0.036259	0.192171	0.127941
chr17	77305148	77305247	6803402	0	+	0.585859	(0.58,1]	chr17	686716	99	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	67	2	1.85952	2.461415	3.06331	0.0671431	0.036259	0.192171	0.127941
chr19	946409	946508	7185310	0	+	0.454545	(0.45,0.485]	chr19	730741	133	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	72	2	2.22801	2.4612249999999998	2.69444	0.0878805	0.0471378	0.183694	0.156915
chr10	130177264	130177362	4615945	0	+	0.377551	(0.36,0.39]	chr10	441040	18	INTRON	INTRON	GLRX3	ENSG00000108010.12	ENST00000331244.10:ENST00000481034.1:ENST00000368644.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	69	2	2.25073	2.4586550000000003	2.66658	0.086575	0.054166	0.182221	0.167824
chr21	46194090	46194190	7680182	0	-	0.59	(0.58,1]	chr21	803056	2	SS5_PROX	SS5_PROX:INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000419093.5:ENST00000457828.6:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding	3	66	2	2.38295	2.45723	2.53151	0.0730701	0.0446412	0.199669	0.140478
chr2	174210973	174211073	1320564	0	-	0.51	(0.485,0.523]	chr2	141020	686	INTRON	INTRON	OLA1	ENSG00000138430.16	ENST00000284719.8:ENST00000344357.9:ENST00000428402.6:ENST00000409546.5:ENST00000429575.1	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.33451	2.4572	2.57989	0.0899526	0.0426546	0.185791	0.149802
chr22	24100913	24101009	7695370	0	+	0.583333	(0.58,1]	chr22	805517	23	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	66	2	2.30423	2.45716	2.61009	0.0747426	0.0260615	0.172361	0.116811
chr5	52995419	52995519	2418737	0	+	0.4	(0.39,0.419]	chr5	241209	55	INTRON	INTRON	ITGA2	ENSG00000164171.11	ENST00000503810.6:ENST00000296585.10:ENST00000509960.5:ENST00000510722.1:ENST00000509814.5:ENST00000513685.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	83	2	2.14774	2.4569850000000004	2.76623	0.0762396	0.0455536	0.174496	0.154731
chr4	151200257	151200357	2351282	0	-	0.42	(0.419,0.45]	chr4	235096	124	INTRON	INTRON	SH3D19	ENSG00000109686.19	ENST00000409598.8:ENST00000604030.7:ENST00000304527.8:ENST00000409252.6:ENST00000514152.5:ENST00000652233.1:ENST00000604440.5:ENST00000474743.5:ENST00000514013.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	72	2	2.1235	2.4560500000000003	2.7886	0.0766427	0.0693342	0.194077	0.174882
chr6	144311263	144311363	3020120	0	+	0.5	(0.485,0.523]	chr6	295138	190	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1	protein_coding	protein_coding	protein_coding	protein_coding	3	64	2	2.13331	2.45604	2.77877	0.0682166	0.0626854	0.181933	0.164526
chr14	39275236	39275335	5792254	0	+	0.454545	(0.45,0.485]	chr14	567494	74	INTRON	INTRON	MIA2	ENSG00000150527.18	ENST00000553728.1:ENST00000640607.2:ENST00000554392.5:ENST00000555716.5:ENST00000341749.7:ENST00000557038.5:ENST00000396165.8:ENST00000556990.1:ENST00000396158.6:ENST00000280083.7:ENST00000341502.9:ENST00000556148.5:ENST00000348007.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	65	2	2.3351	2.455515	2.57593	0.093234	0.0438295	0.188571	0.153511
chr10	75771487	75771587	4523880	0	+	0.53	(0.523,0.58]	chr10	432277	279	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	104	2	2.42547	2.4554799999999997	2.48549	0.0582885	0.0227679	0.155373	0.108532
chr2	240611902	240612002	1075058	0	+	0.53	(0.523,0.58]	chr2	116637	45	INTRON	INTRON	CAPN10:GPR35	ENSG00000142330.20:ENSG00000178623.13	ENST00000270364.11:ENST00000319838.10:ENST00000403859.1	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.24954	2.4550400000000003	2.66054	0.0806884	0.0500176	0.177452	0.161481
chr11	65427166	65427266	4871613	0	+	0.5	(0.485,0.523]	chr11	468177	45	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	94	2148	2	1.9904	2.45488	2.91936	0.0145135	0.00747294	0.0836197	0.0576451
chrX	133975085	133975185	8115919	0	-	0.4	(0.39,0.419]	chrX	845535	215	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	83	2	2.21371	2.45464	2.69557	0.0837871	0.0399844	0.181557	0.144258
chr6	160105676	160105775	3066703	0	+	0.535354	(0.523,0.58]	chr6	298183	7	UTR3	UTR3:EXON_MRNA:INTRON	IGF2R	ENSG00000197081.16	ENST00000676781.1:ENST00000677704.1:ENST00000356956.6:ENST00000650503.1:ENST00000677628.1:ENST00000569097.2:ENST00000475584.1:ENST00000678224.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	15	302	2	2.23057	2.454465	2.67836	0.0415183	0.00479192	0.136301	0.0416285
chr17	7178398	7178493	6847861	0	-	0.642105	(0.58,1]	chr17	693469	4	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000574388.5:ENST00000573596.1:ENST00000573083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	132	2	2.39138	2.454345	2.51731	0.0329682	0.0156878	0.12289	0.0880112
chr2	222864674	222864771	1037737	0	+	0.42268	(0.419,0.45]	chr2	113175	26	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	117	2	2.38438	2.4542900000000003	2.5242	0.0774181	0.0215368	0.175203	0.105542
chr7	66702575	66702675	3382441	0	+	0.37	(0.36,0.39]	chr7	326362	170	INTRON	INTRON	RABGEF1	ENSG00000154710.18	ENST00000607882.5	protein_coding	nonsense_mediated_decay	protein_coding	nonsense_mediated_decay	3	69	2	2.20456	2.453905	2.70325	0.0824711	0.0589415	0.179396	0.176157
chr20	49664498	49664598	7575681	0	-	0.33	(0.29,0.33]	chr20	791530	74	INTRON	INTRON	B4GALT5	ENSG00000158470.5	ENST00000371711.4	protein_coding	protein_coding	protein_coding	protein_coding	3	63	2	2.16795	2.4527799999999997	2.73761	0.0704177	0.0593427	0.176374	0.168159
chr2	21040737	21040837	1100864	0	-	0.37	(0.36,0.39]	chr2	120063	4	SS5_PROX	SS5_PROX:INTRON	APOB	ENSG00000084674.15	ENST00000233242.5:ENST00000673739.1:ENST00000673882.1:ENST00000399256.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	109	2	2.16473	2.45187	2.73901	0.0786198	0.0289725	0.175203	0.124207
chr8	127810442	127810542	3917943	0	+	0.57	(0.523,0.58]	chr8	374160	65	INTRON	INTRON	PVT1	ENSG00000249859.13	ENST00000667305.1:ENST00000690350.1:ENST00000653522.1:ENST00000664214.1:ENST00000664139.1:ENST00000661830.1:ENST00000657289.1:ENST00000504719.7:ENST00000670223.1:ENST00000652816.1:ENST00000662766.1:ENST00000656880.1:ENST00000660200.1:ENST00000669132.1:ENST00000657211.1:ENST00000653845.1:ENST00000517525.2:ENST00000665856.1:ENST00000651587.1:ENST00000692980.1:ENST00000666353.1:ENST00000657183.1:ENST00000654324.1:ENST00000658556.1:ENST00000657693.1:ENST00000666080.1:ENST00000667539.1:ENST00000521951.1:ENST00000524165.6:ENST00000663753.1:ENST00000665698.1:ENST00000665737.1:ENST00000657112.1:ENST00000664293.1:ENST00000657297.1:ENST00000662410.1:ENST00000670795.1:ENST00000664265.1:ENST00000662413.1:ENST00000660631.1:ENST00000665372.1:ENST00000654091.1:ENST00000523328.6:ENST00000657356.1:ENST00000523427.2:ENST00000657449.1:ENST00000667418.1:ENST00000656402.1:ENST00000662061.1:ENST00000667204.1:ENST00000656491.1:ENST00000667714.1:ENST00000654105.1:ENST00000665721.1:ENST00000518528.2:ENST00000669416.1:ENST00000660438.1:ENST00000661160.1:ENST00000659326.1:ENST00000665246.1:ENST00000657384.1:ENST00000666842.1:ENST00000517790.2:ENST00000522963.6:ENST00000654369.1:ENST00000661625.1:ENST00000657596.1:ENST00000664995.1:ENST00000656532.1:ENST00000656168.1:ENST00000661988.1:ENST00000657517.1:ENST00000670714.1:ENST00000669951.1:ENST00000666777.1:ENST00000657667.1:ENST00000657451.1:ENST00000660456.1:ENST00000661205.1:ENST00000663059.1:ENST00000659625.1:ENST00000656693.1:ENST00000668123.1:ENST00000666776.1:ENST00000664299.1:ENST00000669272.1:ENST00000659912.1:ENST00000670532.1:ENST00000660896.1:ENST00000667149.1:ENST00000656396.1:ENST00000523068.2	lncRNA	lncRNA	lncRNA	lncRNA	5	87	2	2.15937	2.449135	2.7389	0.072318	0.031163	0.168347	0.127822
chr7	73596932	73597032	3602824	0	-	0.64	(0.58,1]	chr7	347622	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000467221.1:ENST00000476404.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	83	2	1.6956	2.446915	3.19823	0.0628207	0.0287301	0.18231	0.115888
chr2	39478231	39478331	765416	0	+	0.49	(0.485,0.523]	chr2	88617	30	INTRON	INTRON	MAP4K3-DT	ENSG00000231312.8	ENST00000659562.1:ENST00000426083.5:ENST00000667600.1:ENST00000443038.1:ENST00000451547.2:ENST00000671403.1:ENST00000658319.1:ENST00000658048.1:ENST00000422128.6:ENST00000670934.1:ENST00000449569.6:ENST00000425775.2:ENST00000662313.1:ENST00000658057.1:ENST00000668952.1:ENST00000446698.5	lncRNA	lncRNA	lncRNA	lncRNA	4	92	2	2.28678	2.44616	2.60554	0.0483104	0.046853	0.156896	0.144683
chr21	33236148	33236247	7609130	0	+	0.636364	(0.58,1]	chr21	794612	52	INTRON	INTRON	IFNAR2	ENSG00000159110.21	ENST00000683941.1:ENST00000382264.7:ENST00000342136.9:ENST00000404220.7:ENST00000420068.1:ENST00000342101.7:ENST00000382238.6:ENST00000413881.5:ENST00000443073.5:ENST00000447980.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	60	2	2.25618	2.445715	2.63525	0.0701734	0.0459151	0.168023	0.154743
chr20	10664613	10664713	7525332	0	-	0.53	(0.523,0.58]	chr20	785558	2	INTRON	INTRON	JAG1	ENSG00000101384.12	ENST00000254958.10	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	2.07805	2.44564	2.81323	0.0650388	0.0476935	0.162385	0.158666
chr2	62894663	62894763	815857	0	+	0.32	(0.29,0.33]	chr2	92141	130	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding	11	201	2	2.40033	2.4454849999999997	2.49064	0.0412177	0.0104148	0.136301	0.0684188
chr2	62997665	62997765	816903	0	+	0.25	[0,0.29]	chr2	92205	5	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000496857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	69	2	2.17202	2.44514	2.71826	0.0648743	0.0380158	0.162218	0.140822
chr10	102651469	102651569	4576539	0	+	0.63	(0.58,1]	chr10	437284	18	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1:ENST00000487927.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	54	2	2.37998	2.444925	2.50987	0.0865901	0.0345705	0.182221	0.135397
chr6	158566925	158567025	3063964	0	+	0.35	(0.33,0.36]	chr6	297687	63	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	6	131	2	1.90113	2.44448	2.98783	0.0570321	0.0278658	0.173555	0.113221
chr20	33010923	33011023	7457398	0	+	0.61	(0.58,1]	chr20	776367	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	BPIFB2	ENSG00000078898.7	ENST00000170150.4	protein_coding	protein_coding	protein_coding	protein_coding	8	125	2	1.82737	2.44447	3.06157	0.0416055	0.0170554	0.149021	0.089166
chr2	239394680	239394780	1392659	0	-	0.65	(0.58,1]	chr2	148759	414	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000493582.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	54	2	2.32693	2.4438899999999997	2.56085	0.0803939	0.038688	0.177452	0.142489
chr16	81549180	81549280	6508785	0	+	0.54	(0.523,0.58]	chr16	645911	533	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	5	108	2	2.20679	2.443635	2.68048	0.0670746	0.020416	0.163063	0.102668
chr17	82001144	82001244	6815308	0	+	0.69	(0.58,1]	chr17	688640	39	INTRON	INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	225	2	1.96695	2.443195	2.91944	0.0557374	0.00196621	0.154188	0.022768300000000002
chr15	67174584	67174684	6140177	0	+	0.62	(0.58,1]	chr15	603994	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	SMAD3	ENSG00000166949.17	ENST00000327367.9:ENST00000679624.1:ENST00000540846.6:ENST00000558894.5:ENST00000439724.7:ENST00000681239.1:ENST00000537194.6:ENST00000558827.1:ENST00000558428.5:ENST00000560402.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	65	2	2.38295	2.4431700000000003	2.50339	0.0730701	0.0468259	0.199669	0.143232
chr20	36860170	36860270	7557103	0	-	0.51	(0.485,0.523]	chr20	789159	4	INTRON	INTRON	SOGA1	ENSG00000149639.15	ENST00000237536.9	protein_coding	protein_coding	protein_coding	protein_coding	4	76	2	1.89919	2.44263	2.98607	0.0679216	0.0503063	0.193274	0.148176
chr14	35801012	35801112	5961329	0	-	0.28	[0,0.29]	chr14	584374	249	INTRON	INTRON	RALGAPA1	ENSG00000174373.17	ENST00000307138.10:ENST00000389698.7:ENST00000680220.1:ENST00000554259.6:ENST00000637992.1:ENST00000382366.7:ENST00000553892.2	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	2.20977	2.4416849999999997	2.6736	0.0694089	0.0350847	0.167028	0.137267
chr10	79147168	79147268	4532828	0	+	0.63	(0.58,1]	chr10	432432	70	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.27185	2.44097	2.61009	0.0747426	0.0433824	0.172361	0.152119
chr17	7114514	7114614	6847781	0	-	0.62	(0.58,1]	chr17	693431	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	54	2	2.27185	2.44097	2.61009	0.0747426	0.0433824	0.172361	0.152119
chr3	172054336	172054436	1627610	0	+	0.48	(0.45,0.485]	chr3	170535	70	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	123	2	2.15468	2.440785	2.72689	0.0418363	0.0329339	0.136827	0.132393
chr1	12609275	12609375	402697	0	-	0.52	(0.485,0.523]	chr1	46226	131	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	88	2	2.41234	2.44062	2.4689	0.0649766	0.0324744	0.162385	0.130627
chr14	31167997	31168097	5952736	0	-	0.34	(0.33,0.36]	chr14	583297	3	SS5_PROX	SS5_PROX:INTRON	HECTD1	ENSG00000092148.14	ENST00000399332.6:ENST00000553700.5:ENST00000693685.1:ENST00000692835.1:ENST00000554882.6:ENST00000611816.5:ENST00000688933.1:ENST00000691390.1:ENST00000553957.6:ENST00000687002.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	66	2	2.19524	2.439235	2.68323	0.0814187	0.0586798	0.178482	0.176098
chr22	42949327	42949427	7823624	0	-	0.5	(0.485,0.523]	chr22	820622	24	INTRON	INTRON	PACSIN2	ENSG00000100266.19	ENST00000263246.8:ENST00000407585.5:ENST00000402229.5:ENST00000453643.5:ENST00000422336.5:ENST00000445706.5:ENST00000453079.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	75	2	2.21468	2.43872	2.66276	0.0803133	0.0363164	0.177452	0.139793
chr17	38725797	38725897	6729341	0	+	0.59	(0.58,1]	chr17	676371	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MLLT6	ENSG00000275023.5	ENST00000621332.5:ENST00000619356.1:ENST00000615741.1:ENST00000615441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	230	2	2.40267	2.438635	2.4746	0.024308	0.007133	0.106588	0.0541241
chr15	24986004	24986103	6063705	0	+	0.343434	(0.33,0.36]	chr15	595387	37	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	11	211	2	2.32175	2.436805	2.55186	0.041327	0.0139215	0.136301	0.0824192
chr19	960464	960564	7185454	0	+	0.62	(0.58,1]	chr19	730754	3	SS5_PROX	SS5_PROX:INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	54	2	2.21459	2.436145	2.6577	0.0695799	0.0487458	0.167028	0.160725
chr6	30317475	30317575	3116877	0	-	0.6	(0.58,1]	chr6	302392	26	INTRON	INTRON	HCG18	ENSG00000231074.10	ENST00000665953.1:ENST00000670397.1:ENST00000659132.1:ENST00000659836.1:ENST00000669374.1:ENST00000653541.1:ENST00000670071.1:ENST00000666294.1:ENST00000657247.1:ENST00000654996.1:ENST00000653301.1:ENST00000658695.1:ENST00000664861.1:ENST00000668974.1:ENST00000654915.1:ENST00000660593.1:ENST00000687430.1:ENST00000656629.1:ENST00000602550.5:ENST00000687815.1:ENST00000449544.6:ENST00000426882.6:ENST00000438412.6:ENST00000602698.6:ENST00000454129.5:ENST00000444126.5:ENST00000602290.2:ENST00000412685.8:ENST00000602861.6:ENST00000454269.6:ENST00000686575.1:ENST00000687471.1:ENST00000691282.1:ENST00000413358.6:ENST00000602498.1	lncRNA	lncRNA	lncRNA	lncRNA	5	88	2	2.2895	2.435685	2.58187	0.0665599	0.0133635	0.162495	0.0801608
chr22	28601854	28601954	7781049	0	-	0.36	(0.33,0.36]	chr22	815741	1589	INTRON	INTRON	TTC28	ENSG00000100154.15	ENST00000397906.7	protein_coding	protein_coding	protein_coding	protein_coding	5	108	2	2.35072	2.435285	2.51985	0.0745285	0.0202702	0.172224	0.102067
chr16	50591901	50592001	6451846	0	+	0.63	(0.58,1]	chr16	639902	333	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	88	2	2.25618	2.43464	2.6131	0.0701734	0.0123529	0.168023	0.0764248
chr17	82003744	82003844	6815334	0	+	0.72	(0.58,1]	chr17	688640	65	INTRON	INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	223	2	1.78206	2.434625	3.08719	0.0283468	0.0108178	0.122785	0.0707085
chr12	10716747	10716840	5369042	0	-	0.548387	(0.523,0.58]	chr12	526709	6	INTRON	INTRON	YBX3	ENSG00000060138.13	ENST00000228251.9:ENST00000279550.11:ENST00000540447.5:ENST00000542641.5:ENST00000539204.5:ENST00000544622.4:ENST00000546298.5:ENST00000544501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	62	2	2.24954	2.43462	2.6197	0.0853454	0.0500176	0.181766	0.161481
chr2	11585661	11585761	720735	0	+	0.48	(0.45,0.485]	chr2	84147	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000263834.9:ENST00000381483.6:ENST00000234142.9	protein_coding	protein_coding	protein_coding	protein_coding	5	109	2	2.20266	2.434	2.66534	0.046065	0.0384371	0.142918	0.141711
chr1	89854653	89854753	181037	0	+	0.41	(0.39,0.419]	chr1	19585	76	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	4	82	2	2.24559	2.43343	2.62127	0.0923527	0.0375053	0.188571	0.139823
chr16	81622399	81622499	6509521	0	+	0.61	(0.58,1]	chr16	645926	3	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6:ENST00000566513.5	protein_coding	protein_coding	protein_coding	protein_coding	4	65	2	1.91069	2.43191	2.95313	0.0607034	0.0435972	0.179468	0.139245
chr16	81545681	81545781	6508750	0	+	0.49	(0.485,0.523]	chr16	645911	498	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	6	120	2	2.02817	2.4315499999999997	2.83493	0.0416301	0.0333987	0.149021	0.124189
chr16	81453726	81453826	6507828	0	+	0.58	(0.523,0.58]	chr16	645906	78	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	4	75	2	1.91169	2.431495	2.9513	0.0659513	0.0531089	0.189025	0.149478
chr13	40627247	40627347	5692938	0	-	0.4	(0.39,0.419]	chr13	558751	641	INTRON	INTRON	FOXO1	ENSG00000150907.10	ENST00000379561.6:ENST00000655267.1:ENST00000660760.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	68	2	2.20247	2.430685	2.6589	0.0879325	0.0592353	0.183764	0.176157
chr15	24985013	24985112	6063695	0	+	0.373737	(0.36,0.39]	chr15	595387	27	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	23	476	2	2.32573	2.4302200000000003	2.53471	0.0386623	0.00612561	0.131324	0.0489549
chr16	81542982	81543082	6508723	0	+	0.66	(0.58,1]	chr16	645911	471	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	2.32693	2.42922	2.53151	0.0446412	0.038688	0.142489	0.140478
chr22	33915198	33915298	7802821	0	-	0.44	(0.419,0.45]	chr22	817661	261	INTRON	INTRON	LARGE1	ENSG00000133424.22	ENST00000397394.8:ENST00000413114.6:ENST00000676070.1:ENST00000674543.1:ENST00000676370.1:ENST00000354992.7:ENST00000402320.6:ENST00000674789.1:ENST00000675277.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	70	2	2.17119	2.42877	2.68635	0.0876314	0.0637569	0.184651	0.183437
chr17	17822617	17822717	6865747	0	-	0.66	(0.58,1]	chr17	695915	17	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	131	2	2.40736	2.42854	2.44972	0.0320117	0.0184955	0.121593	0.096816
chr17	55273384	55273484	6757192	0	+	0.38	(0.36,0.39]	chr17	681704	49	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	130	2	2.06639	2.42852	2.79065	0.0422038	0.0407113	0.149195	0.135868
chr17	55321172	55321270	6757681	0	+	0.581633	(0.58,1]	chr17	681735	4	UTR3	UTR3:EXON_MRNA	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	295	2	2.2771	2.4282399999999997	2.57938	0.0261144	0.00474861	0.109938	0.0413976
chr2	161160486	161160586	938090	0	+	0.53	(0.523,0.58]	chr2	103607	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TANK	ENSG00000136560.14	ENST00000259075.6:ENST00000432002.5:ENST00000463502.1:ENST00000440506.5:ENST00000429217.5:ENST00000461338.5:ENST00000406287.5:ENST00000402568.5:ENST00000457887.5:ENST00000477952.1:ENST00000392749.7:ENST00000432692.6:ENST00000441987.5:ENST00000494976.1:ENST00000405852.5:ENST00000483622.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	74	2	2.1168	2.4278500000000003	2.7389	0.072318	0.044099	0.168347	0.153511
chr1	58658806	58658905	496194	0	-	0.30303	(0.29,0.33]	chr1	59127	42	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:INTRON	MYSM1	ENSG00000162601.11	ENST00000655340.1:ENST00000493821.6:ENST00000472487.6:ENST00000622766.1:ENST00000665648.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	101	2	2.34253	2.42751	2.51249	0.0701209	0.0192204	0.167965	0.0994526
chr14	19095607	19095706	5754296	0	+	0.555556	(0.523,0.58]	chr14	564239	18	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000619938.1:ENST00000644980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	10	164	2	1.66525	2.42734	3.18943	0.0557303	0.0183212	0.170906	0.0923288
chr14	103104052	103104152	5921854	0	+	0.79	(0.58,1]	chr14	579210	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	EXOC3L4	ENSG00000205436.8	ENST00000688303.1:ENST00000687959.1:ENST00000380069.7:ENST00000559116.1:ENST00000560925.5:ENST00000560102.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	102	2	2.06805	2.4271000000000003	2.78615	0.0335725	0.0285184	0.133139	0.115242
chr2	78213408	78213508	1209584	0	-	0.35	(0.33,0.36]	chr2	130071	2732	INTRON	INTRON	ENSG00000227088	ENSG00000227088.2	ENST00000667782.1	lncRNA	lncRNA	lncRNA	lncRNA	3	65	2	2.28913	2.426585	2.56404	0.0954498	0.0492629	0.189038	0.160725
chr17	15535481	15535581	6860797	0	-	0.5	(0.485,0.523]	chr17	695094	45	INTRON	INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	75	2	1.89919	2.426355	2.95352	0.0679216	0.0528263	0.193274	0.14912
chr11	70657231	70657331	5060847	0	-	0.52	(0.485,0.523]	chr11	492672	24	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2:ENST00000686462.1:ENST00000690983.1:ENST00000470759.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	106	2	2.14677	2.4259399999999998	2.70511	0.0733061	0.0195331	0.17026	0.1
chr17	4839733	4839833	6671950	0	+	0.52	(0.485,0.523]	chr17	668609	57	INTRON	INTRON	MINK1	ENSG00000141503.17	ENST00000355280.11:ENST00000572330.5:ENST00000347992.11:ENST00000574453.5:ENST00000453408.7:ENST00000664602.1:ENST00000577021.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	85	2	1.8649	2.425485	2.98607	0.0580088	0.0503063	0.175217	0.148176
chr5	34191011	34191111	2634309	0	-	0.63	(0.58,1]	chr5	261375	16	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000507274.1:ENST00000508395.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	9	136	2	1.55797	2.4253549999999997	3.2927399999999998	0.0675632	0.0108437	0.193219	0.0707085
chr16	89437417	89437517	6661208	0	-	0.56	(0.523,0.58]	chr16	666753	57	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	62	2	2.14543	2.42284	2.70025	0.0763549	0.0609283	0.179956	0.174544
chr6	158561930	158562030	3063914	0	+	0.51	(0.485,0.523]	chr6	297687	13	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	15	294	2	2.32654	2.422725	2.51891	0.0270313	0.0113158	0.112113	0.071894
chr3	48605280	48605377	1767849	0	-	0.494845	(0.485,0.523]	chr3	182547	1	SS5_PROX	SS5_PROX:INTRON	UQCRC1	ENSG00000010256.11	ENST00000203407.6:ENST00000415995.5:ENST00000412343.5:ENST00000467690.5:ENST00000463708.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	72	2	2.38627	2.4217500000000003	2.45723	0.0700289	0.067556	0.195209	0.163788
chr22	50423614	50423714	7754479	0	+	0.63	(0.58,1]	chr22	812540	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PPP6R2	ENSG00000100239.16	ENST00000359139.7:ENST00000395741.7:ENST00000612753.5:ENST00000395744.7:ENST00000216061.9:ENST00000401672.7:ENST00000427222.2	protein_coding	protein_coding	protein_coding	protein_coding	3	54	2	2.09276	2.42061	2.74846	0.0619333	0.0605281	0.180615	0.158506
chr12	120978814	120978913	5524708	0	-	0.656566	(0.58,1]	chr12	544219	15	INTRON	INTRON	HNF1A-AS1	ENSG00000241388.5	ENST00000619441.1:ENST00000647473.1:ENST00000646404.1:ENST00000537361.1:ENST00000433033.3:ENST00000535301.2	lncRNA	lncRNA	lncRNA	lncRNA	2	41	2	2.38295	2.4199900000000003	2.45703	0.0933945	0.0730701	0.199669	0.188571
chr16	81456820	81456920	6507859	0	+	0.64	(0.58,1]	chr16	645906	109	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.38295	2.4199900000000003	2.45703	0.0933945	0.0730701	0.199669	0.188571
chr4	143337260	143337360	2136944	0	+	0.76	(0.58,1]	chr4	217044	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	GAB1	ENSG00000109458.9	ENST00000262995.8:ENST00000262994.9:ENST00000514639.5	protein_coding	protein_coding	protein_coding	protein_coding	2	41	2	2.38295	2.4199900000000003	2.45703	0.0933945	0.0730701	0.199669	0.188571
chr6	158567624	158567724	3063971	0	+	0.56	(0.523,0.58]	chr6	297687	70	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	6	121	2	1.91177	2.418825	2.92588	0.0524626	0.0287909	0.167062	0.115991
chr3	120669526	120669626	1887820	0	-	0.37	(0.36,0.39]	chr3	191540	165	INTRON	INTRON	HGD	ENSG00000113924.12	ENST00000283871.10:ENST00000476082.2:ENST00000485313.5:ENST00000488183.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	81	2	1.9317	2.41867	2.90564	0.0683899	0.0625454	0.193274	0.160305
chr4	151122207	151122307	2350474	0	-	0.38	(0.36,0.39]	chr4	234979	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	SH3D19	ENSG00000109686.19	ENST00000409598.8:ENST00000604030.7:ENST00000304527.8:ENST00000409252.6:ENST00000514152.5:ENST00000478503.6:ENST00000652233.1:ENST00000427414.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	81	2	1.9317	2.41867	2.90564	0.0683899	0.0625454	0.193274	0.160305
chr20	62957340	62957440	7508269	0	+	0.65	(0.58,1]	chr20	783176	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5:ENST00000411611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	327	2	1.68151	2.41793	3.15435	0.0668103	0.00112924	0.16272	0.0154528
chr3	13029792	13029892	1689434	0	-	0.61	(0.58,1]	chr3	176542	73	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000613206.2:ENST00000648114.1:ENST00000647458.1	protein_coding	protein_coding	protein_coding	protein_coding	3	53	2	2.40217	2.4166600000000003	2.43115	0.100879	0.0309513	0.196131	0.127822
chr6	158040929	158041028	3059907	0	+	0.59596	(0.58,1]	chr6	297390	69	INTRON	INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000638626.1:ENST00000485863.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	3	53	2	2.40217	2.4166600000000003	2.43115	0.100879	0.0309513	0.196131	0.127822
chr16	89300876	89300939	6659815	0	-	0.714286	(0.58,1]	chr16	666650	2	CDS_STOP	CDS_STOP:CDS:UTR3:EXON_MRNA:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	53	2	2.27185	2.41635	2.56085	0.0803939	0.0433824	0.177452	0.152119
chr2	26091663	26091763	731396	0	+	0.4	(0.39,0.419]	chr2	85215	490	INTRON	INTRON	RAB10	ENSG00000084733.11	ENST00000264710.5:ENST00000495146.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	67	2	2.24864	2.415635	2.58263	0.0970705	0.0544427	0.190588	0.167824
chr6	166333294	166333393	3301406	0	-	0.646465	(0.58,1]	chr6	319660	15	INTRON	INTRON	SFT2D1	ENSG00000198818.10	ENST00000361731.4:ENST00000487841.5:ENST00000478705.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	81	2	1.7315	2.41487	3.09824	0.0583126	0.0341637	0.175217	0.125129
chr8	22387861	22387961	3770227	0	+	0.46	(0.45,0.485]	chr8	362727	80	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	9	177	2	2.29509	2.4143499999999998	2.53361	0.0609536	0.0096438	0.158506	0.065748
chr8	667690	667790	3932400	0	-	0.56	(0.523,0.58]	chr8	376023	18	UTR3	UTR3:EXON_MRNA:INTRON	ERICH1	ENSG00000104714.14	ENST00000522706.5:ENST00000523415.5:ENST00000262109.8:ENST00000523053.1:ENST00000522893.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	61	2	2.24954	2.413605	2.57767	0.090356	0.0500176	0.186369	0.161481
chr12	46371649	46371734	5419641	0	-	0.6	(0.58,1]	chr12	530638	3	SS3_PROX	SS3_PROX:INTRON	SLC38A2	ENSG00000134294.14	ENST00000256689.10:ENST00000549258.5:ENST00000551405.1:ENST00000553252.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	73	2	1.76073	2.41202	3.06331	0.0647557	0.036259	0.185835	0.127941
chr2	160453545	160453645	1293086	0	-	0.44	(0.419,0.45]	chr2	138809	207	INTRON	INTRON	RBMS1	ENSG00000153250.21	ENST00000348849.8:ENST00000474820.5:ENST00000491781.5:ENST00000477486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	69	2	2.17119	2.41089	2.65059	0.0917577	0.0637569	0.188571	0.184651
chr18	80150965	80151064	7101515	0	+	0.636364	(0.58,1]	chr18	723199	18	INTRON	INTRON	PARD6G-AS1	ENSG00000267270.7	ENST00000587254.5:ENST00000586421.1:ENST00000589574.1:ENST00000585422.1:ENST00000662611.1	lncRNA	lncRNA	lncRNA	lncRNA	3	56	2	2.0383	2.4100799999999998	2.78186	0.0978534	0.0342923	0.191981	0.13449
chr19	6679208	6679281	7322510	0	-	0.630137	(0.58,1]	chr19	756375	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000599899.5:ENST00000695690.1:ENST00000695691.1:ENST00000695689.1:ENST00000695653.1:ENST00000695654.1:ENST00000599668.1:ENST00000601008.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	87	2	2.11464	2.408785	2.70293	0.0873232	0.00981512	0.183238	0.0664239
chr16	87859409	87859509	6657068	0	-	0.51	(0.485,0.523]	chr16	666007	72	INTRON	INTRON	SLC7A5	ENSG00000103257.9	ENST00000261622.5:ENST00000565644.5	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	2.23742	2.408655	2.57989	0.0899526	0.0515447	0.185791	0.165949
chr6	63733104	63733204	2935261	0	+	0.44	(0.419,0.45]	chr6	288895	72	INTRON	INTRON	PHF3	ENSG00000118482.12	ENST00000505138.1	protein_coding	protein_coding	protein_coding	protein_coding	4	95	2	2.23715	2.4072649999999998	2.57738	0.0944246	0.0294759	0.188571	0.125644
chr20	47256609	47256709	7569880	0	-	0.42	(0.419,0.45]	chr20	791018	68	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	95	2	2.05858	2.40695	2.75532	0.0800906	0.0439423	0.177372	0.153511
chr14	19097499	19097598	5754315	0	+	0.747475	(0.58,1]	chr14	564239	37	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000619938.1:ENST00000644980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	6	104	2	1.98597	2.405325	2.82468	0.0670812	0.0123866	0.163063	0.0765738
chr6	144294103	144294202	3019948	0	+	0.313131	(0.29,0.33]	chr6	295138	18	INTRON	INTRON	UTRN	ENSG00000152818.19	ENST00000367545.8:ENST00000433557.1	protein_coding	protein_coding	protein_coding	protein_coding	4	83	2	2.19616	2.40418	2.6122	0.0868958	0.0243218	0.182479	0.113231
chr16	50607793	50607893	6452005	0	+	0.5	(0.485,0.523]	chr16	639903	1	SS3_PROX	SS3_PROX:INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	12	207	2	1.85139	2.40354	2.95569	0.0353344	0.0194101	0.137983	0.0955413
chr10	96519691	96519789	4739799	0	-	0.326531	(0.29,0.33]	chr10	452337	17	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	TM9SF3	ENSG00000077147.16	ENST00000371142.9:ENST00000649367.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	100	2	2.33089	2.40315	2.47541	0.0572846	0.0287511	0.154343	0.123764
chr10	79147069	79147168	4532827	0	+	0.656566	(0.58,1]	chr10	432432	69	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	7	129	2	2.39138	2.40304	2.4147	0.0329682	0.020116	0.12289	0.101405
chr14	95413441	95413541	6048911	0	-	0.58	(0.523,0.58]	chr14	593438	63	UTR3	UTR3:EXON_MRNA	SYNE3	ENSG00000176438.13	ENST00000682763.1:ENST00000557275.5	protein_coding	protein_coding	protein_coding	protein_coding	3	61	2	2.14543	2.402985	2.66054	0.0806884	0.0609283	0.179956	0.177452
chr3	133772944	133773041	1572463	0	+	0.402062	(0.39,0.419]	chr3	166768	3	EXON_MRNA	EXON_MRNA:INTRON	TF	ENSG00000091513.16	ENST00000402696.9:ENST00000461695.1:ENST00000467842.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	11	283	2	2.0552	2.40229	2.74938	0.0366191	0.0217434	0.139793	0.100615
chr11	65441046	65441146	4871752	0	+	0.36	(0.33,0.36]	chr11	468177	184	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	65	1206	2	2.0123	2.40189	2.79148	0.0158282	0.0123195	0.0887102	0.0756688
chr11	57776311	57776411	4857703	0	+	0.47	(0.45,0.485]	chr11	465175	118	INTRON	INTRON	ENSG00000288534:CTNND1	ENSG00000288534.1:ENSG00000198561.16	ENST00000673781.1:ENST00000673810.1:ENST00000674116.1:ENST00000674060.1:ENST00000524630.5:ENST00000529919.5:ENST00000533189.1:ENST00000682741.1:ENST00000358694.10:ENST00000361332.8:ENST00000361391.10:ENST00000361796.9:ENST00000415361.6:ENST00000426142.6:ENST00000428599.6:ENST00000525902.5:ENST00000526357.5:ENST00000526772.5:ENST00000527467.5:ENST00000528232.5:ENST00000528621.5:ENST00000529526.5:ENST00000529873.5:ENST00000529986.5:ENST00000530094.5:ENST00000530748.5:ENST00000531014.5:ENST00000532245.5:ENST00000532463.5:ENST00000532649.5:ENST00000532787.5:ENST00000532844.5:ENST00000533667.5:ENST00000534579.5:ENST00000399050.10:ENST00000526938.5:ENST00000531007.2:ENST00000674015.1:ENST00000673826.1:ENST00000673683.1:ENST00000674106.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	86	2	1.98623	2.401155	2.81608	0.0958081	0.0375071	0.189038	0.139823
chr6	158245392	158245492	3060969	0	+	0.45	(0.419,0.45]	chr6	297572	127	INTRON	INTRON	TULP4	ENSG00000130338.13	ENST00000620026.1	protein_coding	processed_transcript	protein_coding	processed_transcript	7	145	2	1.97691	2.400175	2.82344	0.0440791	0.0410814	0.153511	0.136301
chr6	36679706	36679795	2906386	0	+	0.696629	(0.58,1]	chr6	285235	4	INTRON	INTRON	CDKN1A	ENSG00000124762.14	ENST00000615513.4:ENST00000448526.6:ENST00000459970.1:ENST00000405375.5:ENST00000244741.10:ENST00000373711.3:ENST00000478800.1:ENST00000462537.3	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	72	2	1.88377	2.399115	2.91446	0.0502411	0.0464528	0.16215	0.143232
chr14	23309347	23309442	5756462	0	+	0.557895	(0.523,0.58]	chr14	564868	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	BCL2L2:BCL2L2-PABPN1	ENSG00000129473.11:ENSG00000258643.6	ENST00000679219.1:ENST00000678311.1:ENST00000678502.1:ENST00000250405.10:ENST00000557579.2:ENST00000553781.5:ENST00000679000.1:ENST00000556100.3:ENST00000557008.2:ENST00000556599.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	10	159	2	1.78434	2.39893	3.01352	0.0432535	0.0248299	0.151848	0.10758
chr22	32819096	32819196	7717800	0	+	0.45	(0.419,0.45]	chr22	807776	166	INTRON	INTRON	TIMP3	ENSG00000100234.12	ENST00000266085.7	protein_coding	protein_coding	protein_coding	protein_coding	8	186	2	2.15055	2.3982799999999997	2.64601	0.0647854	0.0164946	0.162218	0.0914227
chr7	29195782	29195879	3334300	0	+	0.391753	(0.39,0.419]	chr7	322839	4	INTRON	INTRON	CHN2	ENSG00000106069.24	ENST00000439384.5:ENST00000474070.5:ENST00000222792.11:ENST00000409350.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	80	2	1.92955	2.39784	2.86613	0.0687349	0.0665161	0.193274	0.162469
chr19	953890	953990	7185385	0	+	0.53	(0.523,0.58]	chr19	730741	208	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	91	2	2.14543	2.39656	2.64769	0.0609283	0.0453055	0.179956	0.14196
chr3	52804896	52804987	1474684	0	+	0.494505	(0.485,0.523]	chr3	158697	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	ITIH3	ENSG00000162267.13	ENST00000621946.4:ENST00000449956.3:ENST00000416872.6:ENST00000495622.5:ENST00000493136.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	89	2	2.18869	2.39615	2.60361	0.0688144	0.0541523	0.167824	0.165663
chr6	7211472	7211572	2839123	0	+	0.41	(0.39,0.419]	chr6	277964	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	RREB1	ENSG00000124782.21	ENST00000379933.7:ENST00000379938.7:ENST00000349384.10:ENST00000334984.10:ENST00000475946.5:ENST00000483150.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	66	2	2.24864	2.395785	2.54293	0.102111	0.0544427	0.19738	0.167824
chr11	65439049	65439149	4871732	0	+	0.38	(0.36,0.39]	chr11	468177	164	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	30	673	2	2.17757	2.394895	2.61222	0.0201756	0.014583	0.097391	0.0837727
chr1	12593993	12594092	402543	0	-	0.585859	(0.58,1]	chr1	46222	130	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	69	2	1.87437	2.39465	2.91493	0.0953385	0.0259506	0.189038	0.116361
chr7	94929307	94929407	3419002	0	+	0.54	(0.523,0.58]	chr7	330364	174	INTRON	INTRON	PPP1R9A	ENSG00000158528.12	ENST00000433360.6:ENST00000340694.8:ENST00000424654.5:ENST00000433881.5:ENST00000456331.6:ENST00000289495.7	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.29891	2.39433	2.48975	0.101574	0.0454288	0.196431	0.154539
chr3	51664509	51664608	1472185	0	+	0.414141	(0.39,0.419]	chr3	157989	12	UTR3	UTR3:EXON_MRNA:INTRON	RAD54L2:TEX264	ENSG00000164080.14:ENSG00000164081.13	ENST00000684192.1:ENST00000409535.6:ENST00000419358.5	protein_coding	protein_coding	protein_coding	protein_coding	5	109	2	2.20521	2.393435	2.58166	0.0954673	0.0184044	0.189038	0.0964204
chr19	34382098	34382197	7243171	0	+	0.606061	(0.58,1]	chr19	741718	1	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	57	2	2.15135	2.3933	2.63525	0.0825864	0.0459151	0.179396	0.154743
chr16	85584235	85584335	6518915	0	+	0.61	(0.58,1]	chr16	646396	275	INTRON	INTRON	GSE1	ENSG00000131149.19	ENST00000637419.1:ENST00000635906.1	protein_coding	protein_coding	protein_coding	protein_coding	2	40	2	2.38295	2.39256	2.40217	0.100879	0.0730701	0.199669	0.196131
chr9	133972490	133972590	4430130	0	-	0.6	(0.58,1]	chr9	423331	329	INTRON	INTRON	VAV2	ENSG00000160293.17	ENST00000371851.1:ENST00000371850.8:ENST00000406606.7:ENST00000486113.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	2	40	2	2.38295	2.39256	2.40217	0.100879	0.0730701	0.199669	0.196131
chr2	36844373	36844472	1119331	0	-	0.434343	(0.419,0.45]	chr2	122323	68	UTR3	UTR3:EXON_MRNA	STRN	ENSG00000115808.12	ENST00000263918.9	protein_coding	protein_coding	protein_coding	protein_coding	3	68	2	2.17119	2.3925549999999998	2.61392	0.0961463	0.0637569	0.189169	0.184651
chr19	1408492	1408587	7187430	0	+	0.694737	(0.58,1]	chr19	731282	3	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	73	2	2.35391	2.39253	2.43115	0.0600041	0.0309513	0.158506	0.127822
chr12	6339592	6339691	5362103	0	-	0.525253	(0.523,0.58]	chr12	525042	50	INTRON	INTRON	TNFRSF1A	ENSG00000067182.8	ENST00000534885.5:ENST00000162749.7:ENST00000543995.5:ENST00000540022.5:ENST00000539372.5:ENST00000366159.8:ENST00000543048.5:ENST00000440083.6:ENST00000536194.1:ENST00000535958.1:ENST00000538363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	60	2	2.24954	2.39196	2.53438	0.0957531	0.0500176	0.189038	0.161481
chr16	89293990	89294090	6659745	0	-	0.65	(0.58,1]	chr16	666648	18	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	81	2	1.9904	2.39109	2.79178	0.0565563	0.0330237	0.154343	0.132748
chr10	32911626	32911670	4663736	0	-	0.5	(0.485,0.523]	chr10	445242	1	CDS	CDS:UTR3:EXON_MRNA	ITGB1	ENSG00000150093.20	ENST00000609742.3:ENST00000678989.1:ENST00000677363.1:ENST00000302278.8:ENST00000396033.6:ENST00000423113.5:ENST00000417122.7:ENST00000676895.1:ENST00000678120.1:ENST00000676623.1:ENST00000678952.1:ENST00000677999.1:ENST00000679187.1:ENST00000678479.1:ENST00000676964.1:ENST00000488494.6:ENST00000488427.2:ENST00000678591.1:ENST00000678943.1:ENST00000437302.6:ENST00000678701.1:ENST00000678766.1:ENST00000676659.1:ENST00000677310.1:ENST00000494395.1:ENST00000474568.6:ENST00000676460.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	60	2	2.28678	2.389375	2.49197	0.10114	0.046853	0.196131	0.156896
chr2	152342417	152342517	925535	0	+	0.5	(0.485,0.523]	chr2	103058	63	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.28678	2.389375	2.49197	0.10114	0.046853	0.196131	0.156896
chr17	15468817	15468917	6860123	0	-	0.55	(0.523,0.58]	chr17	695071	13	INTRON	INTRON	TVP23C-CDRT4:CDRT4	ENSG00000259024.6:ENSG00000239704.11	ENST00000522212.6:ENST00000520956.2:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000524205.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	99	2	2.12522	2.38934	2.65346	0.0984283	0.0134205	0.192982	0.0804825
chr8	38765798	38765898	3802213	0	+	0.39	(0.36,0.39]	chr8	365828	80	INTRON	INTRON	TACC1	ENSG00000147526.20	ENST00000519416.5:ENST00000520615.5:ENST00000520340.5:ENST00000518415.5:ENST00000521642.5:ENST00000521050.5:ENST00000522904.5:ENST00000522752.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	79	2	1.97044	2.389215	2.80799	0.0716011	0.0637116	0.184651	0.168159
chr21	45479501	45479601	7631069	0	+	0.46	(0.45,0.485]	chr21	797701	2	SS3_PROX	SS3_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	4	87	2	2.31074	2.38808	2.46542	0.0781942	0.0337868	0.175203	0.133182
chr11	63870869	63870969	4867122	0	+	0.56	(0.523,0.58]	chr11	466776	11	INTRON	INTRON	MARK2	ENSG00000072518.22	ENST00000377810.8:ENST00000361128.9:ENST00000508192.5:ENST00000350490.11:ENST00000402010.8:ENST00000502399.7:ENST00000425897.3:ENST00000679216.1:ENST00000513765.7:ENST00000543220.5:ENST00000543674.1:ENST00000540169.5	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.19842	2.388045	2.57767	0.090356	0.0551586	0.186369	0.169218
chr3	30634846	30634946	1433375	0	+	0.33	(0.29,0.33]	chr3	153006	16	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4:ENST00000673250.1:ENST00000672866.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	99	2	2.10063	2.387195	2.67376	0.099471	0.0132113	0.194773	0.0793133
chr8	122785645	122785745	3909692	0	+	0.53	(0.523,0.58]	chr8	373449	33	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6	protein_coding	protein_coding	protein_coding	protein_coding	4	90	2	2.22701	2.385225	2.54344	0.0650367	0.0599121	0.177269	0.162385
chr6	158610489	158610589	3064409	0	+	0.57	(0.523,0.58]	chr6	297742	3	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	4	83	2	2.24595	2.38457	2.52319	0.0830542	0.0287266	0.180329	0.123764
chr21	14962427	14962526	7639980	0	-	0.464646	(0.45,0.485]	chr21	799090	13	UTR3	UTR3:EXON_MRNA:INTRON	ENSG00000235609:NRIP1	ENSG00000235609.7:ENSG00000180530.11	ENST00000432230.6:ENST00000400202.5:ENST00000318948.7:ENST00000400199.5	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	3	62	2	2.19184	2.3838850000000003	2.57593	0.093234	0.0575893	0.188571	0.17499
chr2	11304623	11304723	1089001	0	-	0.45	(0.419,0.45]	chr2	118747	165	INTRON	INTRON	ROCK2	ENSG00000134318.15	ENST00000315872.11:ENST00000261535.7:ENST00000462366.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	81	2	2.0464	2.38382	2.72124	0.0837482	0.0564353	0.181508	0.171982
chr17	78121555	78121633	6977931	0	-	0.653846	(0.58,1]	chr17	712430	1	CDS	CDS:EXON_MRNA:INTRON	TMC6	ENSG00000141524.18	ENST00000590602.6:ENST00000592076.5:ENST00000322914.7:ENST00000392467.7:ENST00000306591.11:ENST00000593044.5:ENST00000591436.5:ENST00000589553.5:ENST00000588087.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	93	2	2.33542	2.383285	2.43115	0.0448553	0.0309513	0.140613	0.127822
chr17	55284655	55284753	6757308	0	+	0.540816	(0.523,0.58]	chr17	681712	2	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000572234.2:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	60	2	2.14543	2.382565	2.6197	0.0853454	0.0609283	0.181766	0.179956
chr20	62923447	62923547	7585569	0	-	0.57	(0.523,0.58]	chr20	792927	87	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.14543	2.382565	2.6197	0.0853454	0.0609283	0.181766	0.179956
chr2	238448094	238448193	1074166	0	+	0.646465	(0.58,1]	chr2	116452	17	UTR3	UTR3:EXON_MRNA:INTRON	ASB1	ENSG00000065802.12	ENST00000264607.9:ENST00000481566.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	73	2	2.37998	2.3825250000000002	2.38507	0.057029	0.0345705	0.154343	0.135397
chr6	2142931	2143031	3084311	0	-	0.49	(0.485,0.523]	chr6	299521	178	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	1.98477	2.38177	2.77877	0.0682166	0.0577158	0.175217	0.164526
chrX	133688377	133688477	8113042	0	-	0.33	(0.29,0.33]	chrX	845486	262	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000667662.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	148	2	2.11648	2.3797449999999998	2.64301	0.0439629	0.0228085	0.139972	0.108716
chr6	157314183	157314283	3298433	0	-	0.6	(0.58,1]	chr6	319197	208	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	27	440	2	2.35114	2.3794500000000003	2.40776	0.0201791	0.00502263	0.097397	0.043
chr10	92691069	92691169	4550912	0	+	0.52	(0.485,0.523]	chr10	434375	1	SS3_PROX	SS3_PROX:INTRON	HHEX	ENSG00000152804.11	ENST00000282728.10:ENST00000551454.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	103	2	2.06555	2.37939	2.69323	0.0492547	0.042042	0.160725	0.137338
chr3	149642401	149642501	1941045	0	-	0.41	(0.39,0.419]	chr3	197491	663	INTRON	INTRON	WWTR1	ENSG00000018408.15	ENST00000465804.5:ENST00000360632.8:ENST00000467467.5:ENST00000479238.1	protein_coding	protein_coding	protein_coding	protein_coding	5	122	2	2.33678	2.379245	2.42171	0.0540226	0.0461697	0.155334	0.151537
chr12	11122278	11122378	5372130	0	-	0.46	(0.45,0.485]	chr12	526873	7	INTRON	INTRON	ENSG00000275778:PRH1:TAS2R14	ENSG00000275778.2:ENSG00000231887.8:ENSG00000212127.6	ENST00000536668.2:ENST00000535024.6:ENST00000541977.5:ENST00000381852.4:ENST00000546265.1:ENST00000541175.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	95	2	1.85077	2.37913	2.90749	0.0588897	0.0523187	0.167062	0.15607
chr11	65424270	65424370	4871584	0	+	0.5	(0.485,0.523]	chr11	468177	16	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000612303.2:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000642367.1	lncRNA	lncRNA	lncRNA	lncRNA	96	1945	2	2.02338	2.3786050000000003	2.73383	0.0131731	0.0107731	0.0791006	0.0705242
chr2	119785671	119785771	883849	0	+	0.4	(0.39,0.419]	chr2	100104	137	INTRON	INTRON	PTPN4	ENSG00000088179.9	ENST00000263708.7:ENST00000460162.1:ENST00000420482.5:ENST00000460289.5:ENST00000488279.6:ENST00000485247.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	91	2	2.2588	2.37859	2.49838	0.0888036	0.0336993	0.183874	0.133139
chr2	42331767	42331865	774694	0	+	0.469388	(0.45,0.485]	chr2	89059	17	UTR3	UTR3:EXON_MRNA	EML4	ENSG00000143924.19	ENST00000318522.10:ENST00000406175.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	317	2	2.18683	2.37773	2.56863	0.0415078	0.0103798	0.136301	0.0682598
chr17	55307641	55307741	6757540	0	+	0.58	(0.523,0.58]	chr17	681718	183	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	151	2	2.35579	2.3765549999999998	2.39732	0.0498554	0.0163021	0.147452	0.0907182
chr13	113587246	113587346	5658872	0	+	0.59	(0.58,1]	chr13	555775	10	INTRON	INTRON	TFDP1	ENSG00000198176.13	ENST00000475254.5:ENST00000465174.1:ENST00000375370.10:ENST00000544902.5:ENST00000408980.6:ENST00000453989.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	62	2	1.96011	2.375945	2.79178	0.0565563	0.0549599	0.168901	0.154343
chr16	81526286	81526386	6508556	0	+	0.41	(0.39,0.419]	chr16	645911	304	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	4	90	2	2.17764	2.37525	2.57286	0.0990461	0.0289908	0.194048	0.12427
chr22	15819558	15819656	7682920	0	+	0.663265	(0.58,1]	chr22	803568	5	INTRON	INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000447898.5	lncRNA	lncRNA	lncRNA	lncRNA	8	134	2	2.04843	2.3751100000000003	2.70179	0.0604171	0.00689695	0.158506	0.0528236
chr16	89302136	89302234	6659830	0	-	0.673469	(0.58,1]	chr16	666658	1	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000567736.6:ENST00000645664.1:ENST00000647238.1:ENST00000568924.1:ENST00000563291.1:ENST00000566858.5:ENST00000644045.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	130	2	2.22141	2.37481	2.52821	0.0545512	0.00859507	0.152588	0.0612699
chr11	62714803	62714902	5045891	0	-	0.656566	(0.58,1]	chr11	489786	23	UTR3	UTR3:EXON_MRNA:INTRON	HNRNPUL2-BSCL2:HNRNPUL2	ENSG00000234857.2:ENSG00000214753.4	ENST00000403734.2:ENST00000301785.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	131	2	2.20984	2.374685	2.53953	0.0311563	0.0195648	0.120073	0.100156
chr2	222913425	222913524	1038235	0	+	0.373737	(0.36,0.39]	chr2	113229	18	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000679558.1:ENST00000680684.1:ENST00000680424.1:ENST00000542810.1:ENST00000540115.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	111	2	2.06674	2.373335	2.67993	0.0897987	0.0231725	0.185671	0.109982
chr6	158626054	158626154	3064567	0	+	0.59	(0.58,1]	chr6	297757	3	SS5_PROX	SS5_PROX:INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	6	102	2	1.80292	2.37193	2.94094	0.059442300000000003	0.0214386	0.176598	0.100405
chr16	87918859	87918959	6657554	0	-	0.56	(0.523,0.58]	chr16	666059	136	INTRON	INTRON	CA5A	ENSG00000174990.8	ENST00000649158.1:ENST00000648177.1:ENST00000649794.3:ENST00000648022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	101	2	2.05666	2.36857	2.68048	0.0839201	0.020416	0.181766	0.102668
chr9	124496322	124496421	4402688	0	-	0.585859	(0.58,1]	chr9	419817	28	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	7	117	2	1.99031	2.36801	2.74571	0.0796315	0.00611671	0.176933	0.0489549
chr12	108645806	108645905	5492571	0	-	0.444444	(0.419,0.45]	chr12	540315	8	UTR3	UTR3:EXON_MRNA	CORO1C	ENSG00000110880.11	ENST00000261401.8:ENST00000420959.6	protein_coding	protein_coding	protein_coding	protein_coding	5	110	2	2.26275	2.367595	2.47244	0.091268	0.0240615	0.188067	0.112363
chr20	8187652	8187752	7427136	0	+	0.4	(0.39,0.419]	chr20	773674	369	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000630757.1:ENST00000637204.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	113	2	2.00601	2.366265	2.72652	0.059719	0.0452803	0.177269	0.141916
chrX	133923654	133923754	8115404	0	-	0.54	(0.523,0.58]	chrX	845529	887	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	71	2	1.95511	2.36583	2.77655	0.0685533	0.0607183	0.179481	0.165066
chr12	132539040	132539139	5353006	0	+	0.636364	(0.58,1]	chr12	523670	107	INTRON	INTRON	FBRSL1	ENSG00000112787.14	ENST00000434748.2:ENST00000650108.1:ENST00000680143.1	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.02776	2.36578	2.7038	0.0700362	0.0648563	0.195209	0.162218
chr22	38731101	38731201	7725130	0	+	0.63	(0.58,1]	chr22	809289	5	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	GTPBP1	ENSG00000100226.16	ENST00000216044.10:ENST00000458073.5:ENST00000462332.1:ENST00000484971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	85	2	2.22558	2.364485	2.50339	0.0468259	0.0311606	0.143232	0.127822
chrX	129464020	129464120	8099600	0	-	0.42	(0.419,0.45]	chrX	844596	152	INTRON	INTRON	SMARCA1	ENSG00000102038.16	ENST00000617310.4:ENST00000371122.8:ENST00000371121.5:ENST00000371123.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	191	2	1.86028	2.3627700000000003	2.86526	0.0871061	0.0160871	0.182877	0.0896852
chr11	93721512	93721600	4921235	0	+	0.420455	(0.419,0.45]	chr11	474481	1	EXON_LNCRNA	EXON_LNCRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	CEP295:SCARNA9	ENSG00000166004.15:ENSG00000254911.3	ENST00000325212.11:ENST00000531700.5:ENST00000530425.1:ENST00000530422.1	protein_coding	protein_coding	protein_coding:lncRNA	protein_coding:lncRNA	44	1020	2	2.1634	2.36207	2.56074	0.0220616	0.0142262	0.101541	0.0833845
chr3	171700425	171700524	1957442	0	-	0.454545	(0.45,0.485]	chr3	199006	2	INTRON	INTRON	PLD1	ENSG00000075651.17	ENST00000351298.9:ENST00000356327.9:ENST00000481505.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	105	2	2.05731	2.361325	2.66534	0.0514401	0.046065	0.165698	0.142918
chr17	55321270	55321368	6757682	0	+	0.377551	(0.36,0.39]	chr17	681735	5	UTR3	UTR3:EXON_MRNA	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	273	2	2.05369	2.3612349999999998	2.66878	0.0622948	0.00776884	0.160139	0.057083
chr8	17904995	17905095	3946855	0	-	0.52	(0.485,0.523]	chr8	377064	82	INTRON	INTRON	FGL1	ENSG00000104760.17	ENST00000398056.6	protein_coding	protein_coding	protein_coding	protein_coding	19	370	2	2.11252	2.3609549999999997	2.60939	0.0201738	0.0171695	0.0973874	0.0923809
chr1	61119126	61119226	146471	0	+	0.31	(0.29,0.33]	chr1	17144	69	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	111	2	2.0987	2.3594600000000003	2.62022	0.0456015	0.0363489	0.142336	0.139793
chr17	14408764	14408864	6683624	0	+	0.52	(0.485,0.523]	chr17	670768	112	INTRON	INTRON	ENSG00000230647	ENSG00000230647.2	ENST00000436469.1:ENST00000655690.1	lncRNA	lncRNA	lncRNA	lncRNA	3	59	2	2.13331	2.3566	2.57989	0.0899526	0.0626854	0.185791	0.181933
chr2	3457890	3457987	711009	0	+	0.670103	(0.58,1]	chr2	83170	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	TRAPPC12	ENSG00000171853.16	ENST00000382110.6:ENST00000324266.10:ENST00000441983.5:ENST00000417243.5:ENST00000469147.5:ENST00000441099.5:ENST00000433382.5:ENST00000462983.5:ENST00000479897.5:ENST00000415624.5:ENST00000479955.5:ENST00000497597.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	84	2	1.81271	2.355985	2.89926	0.10463	0.0102831	0.198437	0.0678667
chr20	33009948	33010044	7457388	0	+	0.552083	(0.523,0.58]	chr20	776365	9	INTRON	INTRON	BPIFB2	ENSG00000078898.7	ENST00000170150.4	protein_coding	protein_coding	protein_coding	protein_coding	19	296	2	1.58465	2.35389	3.12313	0.0506666	0.0115953	0.163485	0.0731301
chr19	940025	940124	7185246	0	+	0.626263	(0.58,1]	chr19	730741	69	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	149	2	1.74113	2.3530550000000003	2.96498	0.050343	0.0138251	0.162463	0.0803495
chr11	65431060	65431160	4871652	0	+	0.38	(0.36,0.39]	chr11	468177	84	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	43	932	2	2.23726	2.35277	2.46828	0.0341473	0.00689237	0.125129	0.0527957
chr7	47361790	47361890	3587409	0	-	0.46	(0.45,0.485]	chr7	346030	151	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	2.16768	2.3507949999999997	2.53391	0.0985287	0.0412837	0.193064	0.148252
chr16	87918062	87918162	6657546	0	-	0.64	(0.58,1]	chr16	666059	128	INTRON	INTRON	CA5A	ENSG00000174990.8	ENST00000649158.1:ENST00000648177.1:ENST00000649794.3:ENST00000648022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	99	2	1.87546	2.3500699999999997	2.82468	0.0803566	0.0123866	0.177452	0.0765738
chr18	62876981	62877081	7081659	0	+	0.4	(0.39,0.419]	chr18	721998	160	INTRON	INTRON	PHLPP1	ENSG00000081913.14	ENST00000262719.10:ENST00000588452.5:ENST00000487409.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	77	2	2.07861	2.34994	2.62127	0.0923527	0.0520689	0.188571	0.167062
chr16	87919059	87919158	6657556	0	-	0.555556	(0.523,0.58]	chr16	666059	138	INTRON	INTRON	CA5A	ENSG00000174990.8	ENST00000649158.1:ENST00000648177.1:ENST00000649794.3:ENST00000648022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	70	2	2.07805	2.348875	2.6197	0.0853454	0.0476935	0.181766	0.158666
chr11	2689797	2689897	4972209	0	-	0.64	(0.58,1]	chr11	481197	816	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	17	250	2	1.97378	2.3477	2.72162	0.0188275	0.0149617	0.0980631	0.0835955
chr10	75725948	75726048	4523423	0	+	0.52	(0.485,0.523]	chr10	432271	780	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5:ENST00000593817.1:ENST00000593699.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	111	2	2.21906	2.347435	2.47581	0.0861655	0.0152706	0.181978	0.0865059
chr7	101937116	101937216	3435184	0	+	0.58	(0.523,0.58]	chr7	332524	41	INTRON	INTRON	CUX1	ENSG00000257923.12	ENST00000437600.9:ENST00000645010.1:ENST00000646649.1:ENST00000497815.5:ENST00000292538.9:ENST00000622516.6:ENST00000393824.7:ENST00000547394.6:ENST00000360264.7:ENST00000425244.6:ENST00000292535.12:ENST00000546411.7:ENST00000549414.6:ENST00000550008.6:ENST00000556210.1:ENST00000558469.5:ENST00000560541.5:ENST00000558836.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	70	2	2.1168	2.347235	2.57767	0.090356	0.044099	0.186369	0.153511
chr6	157311585	157311685	3298407	0	-	0.58	(0.523,0.58]	chr6	319197	182	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	18	333	2	2.13655	2.347135	2.55772	0.0461515	0.00565294	0.143112	0.046459
chr10	79174717	79174817	4533104	0	+	0.56	(0.523,0.58]	chr10	432438	122	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	4	70	2	1.95511	2.3470050000000002	2.7389	0.072318	0.0607183	0.179481	0.168347
chr10	34685361	34685461	4670510	0	-	0.47	(0.45,0.485]	chr10	445537	58	INTRON	INTRON	PARD3	ENSG00000148498.17	ENST00000545260.5:ENST00000545693.5:ENST00000346874.9:ENST00000350537.9:ENST00000374788.8:ENST00000374789.8:ENST00000374790.8:ENST00000374794.8:ENST00000374776.6:ENST00000340077.9:ENST00000374773.6	protein_coding	protein_coding	protein_coding	protein_coding	6	115	2	2.19935	2.3468549999999997	2.49436	0.091453	0.015344	0.188427	0.0869101
chr17	55314526	55314626	6757609	0	+	0.49	(0.485,0.523]	chr17	681718	252	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	96	2	2.27698	2.344965	2.41295	0.0793007	0.0236576	0.176433	0.111208
chrX	133635756	133635856	8112513	0	-	0.31	(0.29,0.33]	chrX	845480	388	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000692074.1:ENST00000667662.1:ENST00000666017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	103	2	2.03199	2.34452	2.65705	0.0789527	0.0307589	0.175712	0.127416
chr1	16644045	16644145	406441	0	-	0.53	(0.523,0.58]	chr1	46900	5	INTRON	INTRON	CROCCP2	ENSG00000215908.10	ENST00000639456.1:ENST00000412962.4:ENST00000635081.1:ENST00000362058.2	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	90	2	1.91182	2.344185	2.77655	0.0685533	0.044405	0.165066	0.153511
chr10	3779045	3779144	4621640	0	-	0.40404	(0.39,0.419]	chr10	441655	32	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS5_PROX:INTRON	KLF6	ENSG00000067082.15	ENST00000497571.6:ENST00000461124.1:ENST00000542957.1:ENST00000173785.4	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	240	2	2.00259	2.34388	2.68517	0.0359434	0.0258129	0.127853	0.116361
chr17	81564170	81564266	6984924	0	-	0.385417	(0.36,0.39]	chr17	713722	3	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA:SS3_ADJ:SS3_PROX:INTRON	NPLOC4	ENSG00000182446.14	ENST00000331134.11:ENST00000572760.5:ENST00000572346.5:ENST00000573519.5:ENST00000573876.1:ENST00000571714.5:ENST00000572824.1:ENST00000573212.5:ENST00000576713.6:ENST00000374747.9:ENST00000576940.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	146	2	1.9133	2.342765	2.77223	0.0434444	0.0418815	0.15233	0.136901
chr22	24041273	24041373	7694748	0	+	0.49	(0.485,0.523]	chr22	805392	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	CABIN1	ENSG00000099991.18	ENST00000454754.5:ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000445422.5:ENST00000398319.6	protein_coding	protein_coding	protein_coding	protein_coding	10	156	2	2.07896	2.34225	2.60554	0.0483104	0.0224062	0.144683	0.108193
chr1	155313375	155313474	249831	0	+	0.59596	(0.58,1]	chr1	29181	5	INTRON	INTRON	FDPS	ENSG00000160752.15	ENST00000611010.4:ENST00000468479.5:ENST00000447866.5:ENST00000461507.5:ENST00000474345.5:ENST00000471117.5:ENST00000368356.9:ENST00000467076.5:ENST00000495308.5:ENST00000491013.5:ENST00000356657.10:ENST00000465559.5:ENST00000470171.5:ENST00000612683.1:ENST00000489003.5:ENST00000477057.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	115	2	1.64511	2.340935	3.03676	0.0896966	0.0198789	0.185477	0.100864
chr19	49855727	49855811	7283874	0	+	0.607143	(0.58,1]	chr19	749089	2	SS5_PROX	SS5_PROX:INTRON	PTOV1	ENSG00000104960.15	ENST00000601612.5:ENST00000594151.5:ENST00000600603.5:ENST00000601638.5:ENST00000594165.5:ENST00000598325.5:ENST00000391842.5:ENST00000599732.5:ENST00000601675.5:ENST00000600793.1:ENST00000600105.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	83	2	2.26544	2.3405050000000003	2.41557	0.0542363	0.0284795	0.15176	0.123012
chr6	157312884	157312984	3298420	0	-	0.61	(0.58,1]	chr6	319197	195	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	25	393	2	2.21357	2.33994	2.46631	0.0273104	0.00440059	0.112372	0.0393688
chr20	8556024	8556124	7430828	0	+	0.32	(0.29,0.33]	chr20	773698	1840	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	101	2	2.18508	2.338875	2.49267	0.0671923	0.0313211	0.163263	0.127822
chr18	49814256	49814355	7060319	0	+	0.717172	(0.58,1]	chr18	720432	4	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	SNHG22	ENSG00000267322.3	ENST00000690629.1:ENST00000692415.1:ENST00000690594.1:ENST00000684796.1:ENST00000692469.1:ENST00000691136.1:ENST00000692861.1:ENST00000688852.1:ENST00000688432.1:ENST00000686035.1:ENST00000688272.1:ENST00000692680.1:ENST00000687037.1:ENST00000692863.1:ENST00000691335.1:ENST00000685185.1:ENST00000688673.1:ENST00000690662.1:ENST00000689920.1:ENST00000692027.1:ENST00000685190.1:ENST00000687911.1:ENST00000691363.1:ENST00000687196.1:ENST00000589499.1:ENST00000615535.1	lncRNA	lncRNA	lncRNA	lncRNA	164	2766	2	2.2861	2.338675	2.39125	0.0131172	0.00439008	0.0783814	0.0393688
chr11	2684699	2684799	4972158	0	-	0.66	(0.58,1]	chr11	481197	765	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	15	240	2	1.99008	2.338555	2.68703	0.0470208	0.00392591	0.143232	0.036666700000000003
chr13	75433280	75433380	5727517	0	-	0.34	(0.33,0.36]	chr13	561722	561	INTRON	INTRON	TBC1D4	ENSG00000136111.14	ENST00000377636.8:ENST00000377625.6:ENST00000431480.6	protein_coding	protein_coding	protein_coding	protein_coding	5	101	2	2.12761	2.33703	2.54645	0.101675	0.019106	0.19661	0.0994227
chr2	239284175	239284275	1391550	0	-	0.67	(0.58,1]	chr2	148740	326	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	50	2	2.27185	2.3370100000000003	2.40217	0.100879	0.0433824	0.196131	0.152119
chr17	317526	317625	6821451	0	-	0.636364	(0.58,1]	chr17	689582	110	INTRON	INTRON	RPH3AL	ENSG00000181031.16	ENST00000618002.4:ENST00000331302.12:ENST00000323434.12:ENST00000536489.6:ENST00000576001.5:ENST00000576420.5:ENST00000577079.5:ENST00000574722.5:ENST00000570638.5:ENST00000574953.5:ENST00000573780.5:ENST00000575736.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	54	2	2.0383	2.3367750000000003	2.63525	0.0978534	0.0459151	0.191981	0.154743
chr13	112697011	112697111	5652610	0	+	0.75	(0.58,1]	chr13	554897	1	SS5_PROX	SS5_PROX:INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5:ENST00000419448.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	2.21459	2.33581	2.45703	0.0933945	0.0487458	0.188571	0.160725
chr17	82001544	82001644	6815312	0	+	0.65	(0.58,1]	chr17	688640	43	INTRON	INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	266	2	2.08815	2.33563	2.58311	0.0417147	0.00391723	0.136469	0.0365937
chr13	113507055	113507154	5658347	0	+	0.606061	(0.58,1]	chr13	555703	11	INTRON	INTRON	TMCO3	ENSG00000150403.18	ENST00000434316.7:ENST00000375391.5:ENST00000474393.5:ENST00000462877.5	protein_coding	protein_coding	protein_coding	protein_coding	3	55	2	2.11464	2.3353	2.55596	0.0873232	0.0534085	0.183238	0.167062
chr20	47258501	47258600	7569899	0	-	0.555556	(0.523,0.58]	chr20	791018	87	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000467200.6:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000468376.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	109	2	2.15937	2.33459	2.50981	0.0561618	0.031163	0.154188	0.127822
chr14	89334956	89335056	6027452	0	-	0.56	(0.523,0.58]	chr14	591456	13	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5:ENST00000555658.5:ENST00000554005.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	58	2	2.09041	2.33404	2.57767	0.090356	0.0674148	0.192827	0.186369
chr11	65443143	65443243	4871773	0	+	0.54	(0.523,0.58]	chr11	468177	205	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	102	1998	2	2.2701	2.33378	2.39746	0.0199602	0.00681253	0.0968284	0.0524472
chr17	77483430	77483530	6805216	0	+	0.63	(0.58,1]	chr17	686820	12	EXON_MRNA	EXON_MRNA:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6:ENST00000427180.5:ENST00000589920.5:ENST00000585638.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	94	2	2.13564	2.3335749999999997	2.53151	0.0446412	0.0287631	0.140478	0.123764
chr6	157313483	157313583	3298426	0	-	0.53	(0.523,0.58]	chr6	319197	201	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	16	257	2	1.9808	2.333185	2.68557	0.0254958	0.0223376	0.108882	0.108193
chr6	157312584	157312684	3298417	0	-	0.59	(0.58,1]	chr6	319197	192	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	8	126	2	2.30819	2.332685	2.35718	0.0431826	0.0152921	0.138436	0.0866186
chr20	62960703	62960803	7508304	0	+	0.68	(0.58,1]	chr20	783185	1	SS5_PROX	SS5_PROX:INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	50	2	2.15496	2.332415	2.50987	0.0865901	0.0548868	0.182221	0.168717
chr21	44863018	44863117	7678468	0	-	0.606061	(0.58,1]	chr21	802764	12	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000474737.5:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	176	2	1.91862	2.33233	2.74604	0.0510694	0.015009	0.148503	0.0852854
chr7	36262023	36262123	3346076	0	+	0.48	(0.45,0.485]	chr7	323698	226	INTRON	INTRON	EEPD1	ENSG00000122547.11	ENST00000242108.9:ENST00000534978.1	protein_coding	protein_coding	protein_coding	protein_coding	3	60	2	2.08776	2.331845	2.57593	0.093234	0.0696113	0.194713	0.188571
chr20	62887799	62887897	7585187	0	-	0.571429	(0.523,0.58]	chr20	792848	7	UTR3	UTR3:EXON_MRNA:INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5	protein_coding	protein_coding	protein_coding	protein_coding	5	96	2	2.22719	2.33139	2.43559	0.0628646	0.0350748	0.160778	0.137238
chr6	158028358	158028457	3059776	0	+	0.575758	(0.523,0.58]	chr6	297374	11	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SYNJ2	ENSG00000078269.15	ENST00000355585.9:ENST00000640338.1:ENST00000367113.5:ENST00000638626.1:ENST00000449320.2:ENST00000640569.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	96	2	2.22719	2.33139	2.43559	0.0628646	0.0350748	0.160778	0.137238
chr2	21020005	21020105	1100635	0	-	0.35	(0.33,0.36]	chr2	119981	1	SS3_PROX	SS3_PROX:INTRON	APOB	ENSG00000084674.15	ENST00000233242.5:ENST00000673739.1:ENST00000673882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	98	2	2.09797	2.331005	2.56404	0.0954498	0.0323344	0.189038	0.130292
chr10	21672461	21672558	4458259	0	+	0.515464	(0.485,0.523]	chr10	427000	14	INTRON	INTRON	MLLT10	ENSG00000078403.17	ENST00000631589.1:ENST00000650893.1:ENST00000377072.8:ENST00000307729.12:ENST00000651298.1:ENST00000377059.7:ENST00000651382.1:ENST00000438473.6:ENST00000650921.1:ENST00000651405.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	95	2	2.24831	2.33063	2.41295	0.0826414	0.0236576	0.179476	0.111208
chr12	120977321	120977421	5524693	0	-	0.55	(0.523,0.58]	chr12	544218	4	SS3_PROX	SS3_PROX:INTRON	HNF1A-AS1	ENSG00000241388.5	ENST00000619441.1:ENST00000647473.1:ENST00000646404.1:ENST00000537361.1:ENST00000433033.3:ENST00000535301.2	lncRNA	lncRNA	lncRNA	lncRNA	5	107	2	2.29891	2.33004	2.36117	0.0527957	0.0454288	0.154539	0.14912
chr17	80560875	80560975	6809061	0	+	0.52	(0.485,0.523]	chr17	687806	147	INTRON	INTRON	RPTOR	ENSG00000141564.15	ENST00000574767.5:ENST00000577161.5:ENST00000306801.8:ENST00000649732.1:ENST00000570891.5:ENST00000544334.6:ENST00000573746.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	121	2	2.1948	2.32896	2.46312	0.060188	0.024067	0.158506	0.112386
chr20	47336857	47336957	7570694	0	-	0.58	(0.523,0.58]	chr20	791082	179	INTRON	INTRON	ZMYND8	ENSG00000101040.20	ENST00000446994.6:ENST00000355972.8:ENST00000396281.8:ENST00000619049.4:ENST00000611941.4:ENST00000372023.7:ENST00000360911.7:ENST00000471951.7:ENST00000536340.5:ENST00000311275.11:ENST00000458360.6:ENST00000262975.8:ENST00000352431.6:ENST00000540497.5:ENST00000461685.5:ENST00000617418.4:ENST00000435836.5:ENST00000446894.5:ENST00000441977.1	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	1.99726	2.3289	2.66054	0.0806884	0.0559624	0.177452	0.171577
chr6	157313083	157313183	3298422	0	-	0.59	(0.58,1]	chr6	319197	197	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	13	206	2	2.09273	2.32754	2.56235	0.0445934	0.00561601	0.140478	0.0462026
chr11	65504531	65504631	4871989	0	+	0.38	(0.36,0.39]	chr11	468193	70	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000612781.1:ENST00000618132.1:ENST00000613376.1:ENST00000610851.1	lncRNA	lncRNA	lncRNA	lncRNA	600	10766	2	2.21086	2.327095	2.44333	0.0212239	0.00878472	0.099635	0.0615125
chr2	239285474	239285574	1391563	0	-	0.61	(0.58,1]	chr2	148740	339	INTRON	INTRON	HDAC4	ENSG00000068024.18	ENST00000543185.6:ENST00000345617.7:ENST00000463007.5:ENST00000493582.5:ENST00000535493.5:ENST00000446876.1:ENST00000685474.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	50	2	2.09276	2.3268050000000002	2.56085	0.0803939	0.0619333	0.180615	0.177452
chr17	29084709	29084807	6875947	0	-	0.591837	(0.58,1]	chr17	697789	19	INTRON	INTRON	MYO18A	ENSG00000196535.19	ENST00000527372.7:ENST00000529578.5:ENST00000531253.5:ENST00000533112.5:ENST00000530254.6:ENST00000546105.5:ENST00000527312.5:ENST00000531438.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	97	2	1.84391	2.32661	2.80931	0.0546208	0.0273431	0.168056	0.112372
chr16	52539646	52539746	6589786	0	-	0.41	(0.39,0.419]	chr16	658709	197	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	88	2	2.23225	2.326045	2.41984	0.0920563	0.0393507	0.188571	0.143358
chr6	158626154	158626254	3064568	0	+	0.66	(0.58,1]	chr6	297757	4	SS5_PROX	SS5_PROX:INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	15	255	2	2.25731	2.326035	2.3947600000000002	0.0218732	0.0129297	0.101015	0.0778105
chr2	88127146	88127246	1215123	0	-	0.59	(0.58,1]	chr2	130935	4	SS3_PROX	SS3_PROX:INTRON	FABP1	ENSG00000163586.10	ENST00000295834.8:ENST00000393750.3:ENST00000495375.1:ENST00000472846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	123	2	1.66965	2.325965	2.98228	0.0532741	0.0198344	0.167062	0.096302
chr11	71997301	71997399	4889013	0	+	0.530612	(0.523,0.58]	chr11	471679	11	UTR3	UTR3:EXON_MRNA	RNF121	ENSG00000137522.18	ENST00000393713.7:ENST00000361756.8:ENST00000526549.5:ENST00000530137.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	109	2	2.07142	2.3259049999999997	2.58039	0.0503562	0.0376816	0.148216	0.140082
chr21	44867922	44868020	7678521	0	-	0.316327	(0.29,0.33]	chr21	802773	19	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	162	2	2.16795	2.32509	2.48223	0.0593427	0.0302454	0.176374	0.118125
chr17	43544265	43544365	6909611	0	-	0.62	(0.58,1]	chr17	703276	3	SS3_PROX	SS3_PROX:INTRON	ETV4	ENSG00000175832.13	ENST00000538265.5:ENST00000319349.10:ENST00000393664.6:ENST00000545954.5:ENST00000545089.5:ENST00000591713.5:ENST00000590236.5:ENST00000585508.5:ENST00000587151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	76	2	1.6588	2.3248	2.9908	0.0677297	0.0409591	0.193274	0.136191
chr6	16749575	16749675	3104342	0	-	0.56	(0.523,0.58]	chr6	300898	2	SS5_PROX	SS5_PROX:INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000483591.6:ENST00000675689.1:ENST00000473388.6:ENST00000495178.1:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1:ENST00000676138.1:ENST00000467008.5:ENST00000498374.1:ENST00000492857.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	120	2	2.11561	2.3246650000000004	2.53372	0.0541346	0.028498	0.151733	0.123012
chr20	62887702	62887799	7585186	0	-	0.618557	(0.58,1]	chr20	792848	6	UTR3	UTR3:EXON_MRNA:INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5	protein_coding	protein_coding	protein_coding	protein_coding	7	108	2	1.67764	2.323905	2.97017	0.0981523	0.00858469	0.192517	0.0612699
chr11	86054473	86054572	5104363	0	-	0.40404	(0.39,0.419]	chr11	495816	225	INTRON	INTRON	PICALM	ENSG00000073921.18	ENST00000393346.8:ENST00000532317.5:ENST00000526033.5:ENST00000630913.2:ENST00000528398.5:ENST00000356360.9:ENST00000534412.5:ENST00000531558.1:ENST00000531930.5:ENST00000532041.5:ENST00000525162.5:ENST00000528256.1:ENST00000528411.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	128	2	2.19621	2.323605	2.451	0.0752523	0.0244655	0.173018	0.113552
chr6	1898016	1898116	3081853	0	-	0.64	(0.58,1]	chr6	299482	1551	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5:ENST00000530927.5:ENST00000380805.6:ENST00000531690.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	77	2	1.89867	2.3235650000000003	2.74846	0.0605281	0.0406464	0.158506	0.146392
chr12	6338702	6338801	5362094	0	-	0.606061	(0.58,1]	chr12	525042	41	INTRON	INTRON	TNFRSF1A	ENSG00000067182.8	ENST00000534885.5:ENST00000162749.7:ENST00000543995.5:ENST00000540022.5:ENST00000539372.5:ENST00000366159.8:ENST00000543048.5:ENST00000440083.6:ENST00000536194.1:ENST00000535958.1:ENST00000538363.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	76	2	1.7315	2.3229800000000003	2.91446	0.0583126	0.0464528	0.175217	0.143232
chr3	48428362	48428460	1766718	0	-	0.602041	(0.58,1]	chr3	182283	27	INTRON	INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	289	2	2.20041	2.3226	2.44479	0.0211875	0.0102887	0.0996078	0.0678983
chr17	7107230	7107317	6847702	0	-	0.609195	(0.58,1]	chr17	693408	1	CDS	CDS:EXON_MRNA	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6	protein_coding	protein_coding	protein_coding	protein_coding	16	247	2	2.03818	2.320685	2.60319	0.0491655	0.00369203	0.146142	0.0348369
chr20	33010427	33010523	7457393	0	+	0.4375	(0.419,0.45]	chr20	776365	14	INTRON	INTRON	BPIFB2	ENSG00000078898.7	ENST00000170150.4	protein_coding	protein_coding	protein_coding	protein_coding	10	195	2	1.97831	2.3206100000000003	2.66291	0.0392988	0.0355562	0.138102	0.132404
chr17	15534882	15534982	6860791	0	-	0.47	(0.45,0.485]	chr17	695094	39	INTRON	INTRON	TVP23C-CDRT4:TVP23C	ENSG00000259024.6:ENSG00000175106.17	ENST00000522212.6:ENST00000557349.5:ENST00000481756.7:ENST00000518506.4:ENST00000225576.7:ENST00000581273.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	175	2	2.28688	2.32034	2.3538	0.052084	0.017414	0.148503	0.0928044
chr4	186283305	186283400	2173830	0	+	0.568421	(0.523,0.58]	chr4	220288	14	INTRON	INTRON	F11	ENSG00000088926.14	ENST00000403665.7:ENST00000264692.8	protein_coding	protein_coding	protein_coding	protein_coding	8	149	2	1.86015	2.3198749999999997	2.7796	0.0864417	0.00988091	0.182221	0.0664239
chr18	49814058	49814157	7060317	0	+	0.646465	(0.58,1]	chr18	720432	2	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	SNHG22	ENSG00000267322.3	ENST00000690629.1:ENST00000692415.1:ENST00000690594.1:ENST00000684796.1:ENST00000692469.1:ENST00000691136.1:ENST00000692861.1:ENST00000688852.1:ENST00000688432.1:ENST00000686035.1:ENST00000688272.1:ENST00000692680.1:ENST00000687037.1:ENST00000692863.1:ENST00000691335.1:ENST00000685185.1:ENST00000688673.1:ENST00000690662.1:ENST00000689920.1:ENST00000692027.1:ENST00000685190.1:ENST00000687911.1:ENST00000691363.1:ENST00000687196.1:ENST00000589499.1:ENST00000615535.1	lncRNA	lncRNA	lncRNA	lncRNA	206	3410	2	1.78864	2.319865	2.85109	0.0173578	0.00486372	0.0928044	0.0456282
chr17	43544165	43544265	6909610	0	-	0.59	(0.58,1]	chr17	703276	2	SS3_PROX	SS3_PROX:INTRON	ETV4	ENSG00000175832.13	ENST00000538265.5:ENST00000319349.10:ENST00000393664.6:ENST00000545954.5:ENST00000545089.5:ENST00000591713.5:ENST00000590236.5:ENST00000585508.5:ENST00000587151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	98	2	1.90424	2.317955	2.73167	0.091076	0.00910814	0.187711	0.0631967
chr16	89297075	89297175	6659776	0	-	0.55	(0.523,0.58]	chr16	666648	49	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	108	2	2.2167	2.31783	2.4189600000000002	0.0865899	0.0172594	0.182221	0.0923873
chr14	19094113	19094212	5754281	0	+	0.575758	(0.523,0.58]	chr14	564239	3	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000619938.1:ENST00000644980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	10	150	2	1.84039	2.316935	2.79348	0.0382538	0.0358392	0.141091	0.127853
chr7	73602790	73602890	3602885	0	-	0.73	(0.58,1]	chr7	347634	27	INTRON	INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1:ENST00000488212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	19	315	2	2.13638	2.316915	2.49745	0.0168742	0.0137035	0.0887495	0.0814223
chrX	153645178	153645277	7960814	0	+	0.575758	(0.523,0.58]	chrX	833164	22	INTRON	INTRON	DUSP9	ENSG00000130829.18	ENST00000477033.1:ENST00000370167.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	104	2	2.08849	2.3159650000000003	2.54344	0.0680726	0.0599121	0.177269	0.164448
chr3	172302576	172302675	1630108	0	+	0.323232	(0.29,0.33]	chr3	170608	34	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000469491.5:ENST00000336824.8:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	3	57	2	2.05996	2.3158399999999997	2.57172	0.0888658	0.0722239	0.199502	0.183874
chrX	283064	283162	7829091	0	+	0.520408	(0.485,0.523]	chrX	821856	10	INTRON	INTRON	PLCXD1	ENSG00000182378.15	ENST00000399012.6:ENST00000484611.7:ENST00000430923.7:ENST00000445062.6:ENST00000429181.6:ENST00000381657.8	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	121	2	2.02754	2.315575	2.60361	0.0668049	0.0541523	0.167824	0.16272
chr9	14837655	14837755	4280091	0	-	0.45	(0.419,0.45]	chr9	408973	123	INTRON	INTRON	FREM1	ENSG00000164946.20	ENST00000380880.4:ENST00000380875.7	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	151	2	2.00738	2.31492	2.62246	0.0878589	0.0173786	0.183675	0.0928044
chr10	133347892	133347992	4783413	0	-	0.7	(0.58,1]	chr10	457516	17	INTRON	INTRON	ENSG00000226699	ENSG00000226699.1	ENST00000452591.1	lncRNA	lncRNA	lncRNA	lncRNA	4	72	2	2.15496	2.314835	2.47471	0.0548868	0.0491463	0.168717	0.146142
chr11	65435654	65435754	4871698	0	+	0.47	(0.45,0.485]	chr11	468177	130	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	74	1646	2	1.77329	2.31444	2.85559	0.0274042	0.00963832	0.119537	0.0659937
chr17	82009667	82009749	6815395	0	+	0.670732	(0.58,1]	chr17	688650	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5:ENST00000578236.5:ENST00000581608.5:ENST00000585274.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	60	2	2.22558	2.313875	2.40217	0.100879	0.0311606	0.196131	0.127822
chr11	65425868	65425968	4871600	0	+	0.26	[0,0.29]	chr11	468177	32	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000693290.1:ENST00000616315.2	lncRNA	lncRNA	lncRNA	lncRNA	71	1133	2	2.02711	2.313835	2.60056	0.0122245	0.0103565	0.0757339	0.0686539
chr10	75503290	75503389	4521191	0	+	0.525253	(0.523,0.58]	chr10	432249	517	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	3	57	2	2.09041	2.312395	2.53438	0.0957531	0.0674148	0.192827	0.189038
chr13	33263559	33263659	5685233	0	-	0.42	(0.419,0.45]	chr13	558196	577	INTRON	INTRON	STARD13	ENSG00000133121.21	ENST00000336934.10:ENST00000567873.1:ENST00000487412.5:ENST00000498019.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	77	2	1.9738	2.312195	2.65059	0.0917577	0.0645318	0.188571	0.185295
chr11	65428764	65428864	4871629	0	+	0.36	(0.33,0.36]	chr11	468177	61	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	27	546	2	2.25049	2.312175	2.37386	0.0340196	0.00965792	0.124986	0.0658416
chr17	17822917	17823017	6865750	0	-	0.49	(0.485,0.523]	chr17	695915	20	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	4	83	2	2.1863	2.31213	2.43796	0.062523	0.0567965	0.172995	0.160305
chr11	65443343	65443443	4871775	0	+	0.38	(0.36,0.39]	chr11	468177	207	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	53	1053	2	1.9735	2.3119199999999998	2.65034	0.0194365	0.0174795	0.0995479	0.0903916
chr2	235537335	235537435	1062971	0	+	0.68	(0.58,1]	chr2	115656	124	INTRON	INTRON	AGAP1	ENSG00000157985.19	ENST00000304032.13:ENST00000409457.5:ENST00000336665.9:ENST00000635100.1:ENST00000402604.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	101	2	2.04843	2.31151	2.57459	0.0604171	0.0224622	0.158506	0.108193
chr11	70792646	70792745	5062208	0	-	0.424242	(0.419,0.45]	chr11	492701	748	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	92	2	2.26209	2.311475	2.36086	0.0799528	0.0541225	0.177133	0.167824
chr20	8462645	8462745	7429894	0	+	0.36	(0.33,0.36]	chr20	773698	906	INTRON	INTRON	PLCB1	ENSG00000182621.18	ENST00000637919.1:ENST00000625874.2:ENST00000630495.2:ENST00000378641.7:ENST00000338037.11:ENST00000629992.2:ENST00000636319.1:ENST00000626161.1:ENST00000404098.6:ENST00000378637.6:ENST00000636825.1:ENST00000635830.1:ENST00000636784.1:ENST00000626114.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	83	2	2.15746	2.30891	2.46036	0.0976451	0.035284	0.191699	0.137983
chr15	24986103	24986203	6063706	0	+	0.37	(0.36,0.39]	chr15	595387	38	EXON_MRNA	EXON_MRNA:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	11	221	2	2.07667	2.308705	2.54074	0.0687217	0.0106283	0.165458	0.069707
chr11	2660808	2660908	4971919	0	-	0.36	(0.33,0.36]	chr11	481197	526	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	4	72	2	2.00997	2.3074250000000003	2.60488	0.090445	0.0578928	0.186505	0.175217
chr6	2217148	2217248	3085055	0	-	0.6	(0.58,1]	chr6	299526	413	INTRON	INTRON	GMDS	ENSG00000112699.11	ENST00000380815.5	protein_coding	protein_coding	protein_coding	protein_coding	8	90	2	1.69627	2.305365	2.91446	0.0502624	0.0464528	0.162213	0.143232
chr5	34191809	34191909	2634317	0	-	0.63	(0.58,1]	chr5	261375	24	INTRON	INTRON	GUSBP18	ENSG00000215158.9	ENST00000507274.1:ENST00000508395.5	transcribed_unprocessed_pseudogene	processed_transcript	transcribed_unprocessed_pseudogene	processed_transcript:transcribed_unprocessed_pseudogene	6	92	2	2.13564	2.305175	2.47471	0.0491463	0.0287631	0.146142	0.123764
chr11	70539930	70540030	5059672	0	-	0.65	(0.58,1]	chr11	492663	366	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	59	2	1.85952	2.30399	2.74846	0.0671431	0.0605281	0.192171	0.158506
chr14	19305851	19305946	5928421	0	-	0.610526	(0.58,1]	chr14	580404	15	INTRON	INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	59	2	1.85952	2.30399	2.74846	0.0671431	0.0605281	0.192171	0.158506
chr1	156657125	156657224	602516	0	-	0.50505	(0.485,0.523]	chr1	71256	96	INTRON	INTRON	ENSG00000229953	ENSG00000229953.1	ENST00000448869.1	lncRNA	lncRNA	lncRNA	lncRNA	4	68	2	1.98477	2.3033449999999998	2.62192	0.0849566	0.0577158	0.181766	0.175217
chr9	123104185	123104282	4235480	0	+	0.494845	(0.485,0.523]	chr9	402065	11	UTR3	UTR3:EXON_MRNA	RABGAP1	ENSG00000011454.18	ENST00000373647.9	protein_coding	protein_coding	protein_coding	protein_coding	4	68	2	1.98477	2.3033449999999998	2.62192	0.0849566	0.0577158	0.181766	0.175217
chr19	51345780	51345873	7399042	0	-	0.548387	(0.523,0.58]	chr19	769721	2	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	ETFB	ENSG00000105379.10	ENST00000309244.9:ENST00000354232.8:ENST00000596253.1:ENST00000594361.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	137	2	2.00966	2.30334	2.59702	0.0429198	0.0360303	0.150679	0.127853
chr11	65436153	65436253	4871703	0	+	0.56	(0.523,0.58]	chr11	468177	135	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	48	957	2	2.23571	2.30314	2.37057	0.022529	0.00942486	0.102982	0.0649462
chr17	7102496	7102596	6847653	0	-	0.59	(0.58,1]	chr17	693402	3	SS3_PROX	SS3_PROX:INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6	protein_coding	protein_coding	protein_coding	protein_coding	6	97	2	1.96218	2.302925	2.64367	0.0832369	0.0114303	0.180677	0.0724212
chr12	26649590	26649690	5399740	0	-	0.39	(0.36,0.39]	chr12	528625	172	INTRON	INTRON	ITPR2	ENSG00000123104.12	ENST00000381340.8	protein_coding	protein_coding	protein_coding	protein_coding	5	85	2	1.79649	2.3022400000000003	2.80799	0.0716011	0.0710667	0.197763	0.168159
chr16	2760026	2760117	6375382	0	+	0.571429	(0.523,0.58]	chr16	630047	5	EXON_MRNA	EXON_MRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000575009.5:ENST00000576894.5:ENST00000630499.2:ENST00000571378.5:ENST00000570971.2:ENST00000573498.5:ENST00000572278.1:ENST00000576076.1:ENST00000572952.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	14	214	2	1.53365	2.30174	3.06983	0.0633423	0.0158873	0.183735	0.0859576
chr21	45475275	45475375	7631019	0	+	0.72	(0.58,1]	chr21	797675	4	SS3_PROX	SS3_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	5	82	2	2.09894	2.301165	2.50339	0.0468259	0.0411332	0.147756	0.143232
chrX	133655934	133656034	8112715	0	-	0.37	(0.36,0.39]	chrX	845480	590	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000692074.1:ENST00000667662.1:ENST00000666017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	106	2	1.82809	2.301	2.77391	0.0750023	0.0516481	0.172839	0.166231
chr17	55272084	55272184	6757179	0	+	0.48	(0.45,0.485]	chr17	681704	36	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	134	2	2.0438	2.3001750000000003	2.55655	0.0544423	0.0306745	0.152298	0.127107
chr2	61536790	61536872	1158363	0	-	0.548781	(0.523,0.58]	chr2	126969	2	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000481214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	200	2	1.88355	2.29992	2.71629	0.0307546	0.0294921	0.12741	0.116079
chr3	30626466	30626566	1433291	0	+	0.51	(0.485,0.523]	chr3	153002	28	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4:ENST00000673250.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	68	2	2.1043	2.298135	2.49197	0.10114	0.0455727	0.196131	0.154743
chr6	16761197	16761297	3104466	0	-	0.48	(0.45,0.485]	chr6	300923	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	ATXN1	ENSG00000124788.19	ENST00000436367.6:ENST00000244769.8:ENST00000473388.6:ENST00000646259.1:ENST00000643828.1:ENST00000483954.1:ENST00000467008.5:ENST00000498374.1:ENST00000492857.1:ENST00000479680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	96	2	2.19935	2.2979000000000003	2.39645	0.091453	0.0255018	0.188427	0.115943
chr16	52537550	52537650	6589765	0	-	0.44	(0.419,0.45]	chr16	658709	176	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	120	2	2.25874	2.2978449999999997	2.33695	0.0825989	0.0291583	0.179401	0.124959
chr12	65894263	65894363	5256145	0	+	0.32	(0.29,0.33]	chr12	512313	120	INTRON	INTRON	HMGA2	ENSG00000149948.14	ENST00000354636.7:ENST00000536545.5:ENST00000403681.7:ENST00000541363.5:ENST00000393577.7:ENST00000539662.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	78	2	1.97772	2.29637	2.61502	0.083721	0.0467674	0.181508	0.156817
chr19	56835324	56835420	7410673	0	-	0.479167	(0.45,0.485]	chr19	771664	12	INTRON	INTRON	ZIM2:PEG3	ENSG00000269699.7:ENSG00000198300.14	ENST00000593711.6:ENST00000689654.1:ENST00000629319.3:ENST00000599935.5:ENST00000595671.5:ENST00000597281.5:ENST00000601070.5:ENST00000693159.1:ENST00000650111.1:ENST00000648694.1:ENST00000326441.15:ENST00000649233.1:ENST00000649680.1:ENST00000649876.1:ENST00000649428.1:ENST00000650632.1:ENST00000650102.1:ENST00000649735.1:ENST00000647621.1:ENST00000598410.5:ENST00000593695.5:ENST00000599577.5:ENST00000594389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	223	2	1.79662	2.29584	2.79506	0.0440083	0.0224501	0.153511	0.102751
chr3	30612866	30612966	1433154	0	+	0.47	(0.45,0.485]	chr3	152992	55	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4	protein_coding	protein_coding	protein_coding	protein_coding	16	291	2	2.21923	2.295425	2.37162	0.0369795	0.0147109	0.129641	0.0843248
chr20	62274700	62274799	7506855	0	+	0.616162	(0.58,1]	chr20	782712	9	INTRON	INTRON	OSBPL2	ENSG00000130703.17	ENST00000622332.4:ENST00000439951.6:ENST00000644535.1:ENST00000358053.3:ENST00000313733.9:ENST00000645520.1:ENST00000642932.1:ENST00000642516.1:ENST00000643174.1:ENST00000644775.1:ENST00000645442.1:ENST00000646968.1:ENST00000646834.1:ENST00000643412.1:ENST00000645426.1:ENST00000644702.1:ENST00000644189.1:ENST00000643981.1:ENST00000642714.1:ENST00000618198.4:ENST00000448156.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	49	2	2.02776	2.2943049999999996	2.56085	0.0803939	0.0700362	0.195209	0.177452
chr20	41560124	41560224	7564239	0	-	0.44	(0.419,0.45]	chr20	790090	84	INTRON	INTRON	CHD6	ENSG00000124177.16	ENST00000373233.8:ENST00000373222.3:ENST00000482596.1:ENST00000440647.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	89	2	2.23715	2.292375	2.3476	0.0944246	0.0461739	0.188571	0.155334
chr9	114203502	114203602	4226187	0	+	0.53	(0.523,0.58]	chr9	400776	71	INTRON	INTRON	COL27A1	ENSG00000196739.15	ENST00000356083.8:ENST00000451716.5:ENST00000494090.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	87	2	1.88419	2.29222	2.70025	0.0763549	0.0470504	0.174544	0.156915
chr14	19302733	19302832	5928389	0	-	0.585859	(0.58,1]	chr14	580401	42	EXON_LNCRNA	EXON_LNCRNA:INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	7	110	2	2.09761	2.2916499999999997	2.48569	0.0670151	0.0122197	0.162928	0.0757339
chr16	52536951	52537050	6589759	0	-	0.40404	(0.39,0.419]	chr16	658709	170	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	210	2	1.7568	2.291045	2.82529	0.0482541	0.0287067	0.159573	0.115888
chr11	70747580	70747680	5061757	0	-	0.56	(0.523,0.58]	chr11	492701	297	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000656230.1:ENST00000470759.5:ENST00000468619.6:ENST00000498519.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	56	2	2.09041	2.2900799999999997	2.48975	0.101574	0.0674148	0.196431	0.192827
chr11	20100236	20100336	4820032	0	+	0.46	(0.45,0.485]	chr11	461595	21	INTRON	INTRON	NAV2	ENSG00000166833.23	ENST00000360655.8:ENST00000396085.6:ENST00000349880.9:ENST00000396087.7:ENST00000533917.5	protein_coding	protein_coding	protein_coding	protein_coding	3	58	2	2.08776	2.2891899999999996	2.49062	0.104221	0.0696113	0.19835	0.194713
chr13	52156191	52156290	5717448	0	-	0.484848	(0.45,0.485]	chr13	561079	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	NEK3	ENSG00000136098.17	ENST00000620675.4:ENST00000611833.4:ENST00000618534.4:ENST00000610828.5:ENST00000617054.1:ENST00000551355.5:ENST00000552973.1:ENST00000550841.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	3	58	2	2.08776	2.2891899999999996	2.49062	0.104221	0.0696113	0.19835	0.194713
chr4	82840243	82840343	2268186	0	-	0.41	(0.39,0.419]	chr4	228400	89	INTRON	INTRON	SEC31A	ENSG00000138674.17	ENST00000395310.7:ENST00000513858.5:ENST00000348405.8:ENST00000503937.5:ENST00000448323.5:ENST00000311785.11:ENST00000509142.5:ENST00000443462.6:ENST00000500777.6:ENST00000505472.5:ENST00000355196.6:ENST00000508502.5:ENST00000264405.9:ENST00000505984.5:ENST00000511338.1:ENST00000515749.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	87	2	2.28487	2.28913	2.29339	0.0857002	0.0501037	0.181766	0.161731
chr6	158568024	158568124	3063975	0	+	0.6	(0.58,1]	chr6	297687	74	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	9	143	2	2.23506	2.288715	2.34237	0.0360611	0.0183791	0.127853	0.096291
chr14	89255011	89255111	6026648	0	-	0.54	(0.523,0.58]	chr14	591432	238	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	93	2	2.1913299999999998	2.2876149999999997	2.3839	0.0679164	0.0378186	0.164413	0.140551
chr14	39271975	39272074	5792221	0	+	0.444444	(0.419,0.45]	chr14	567494	41	INTRON	INTRON	MIA2	ENSG00000150527.18	ENST00000553728.1:ENST00000640607.2:ENST00000554392.5:ENST00000555716.5:ENST00000341749.7:ENST00000557038.5:ENST00000396165.8:ENST00000556990.1:ENST00000396158.6:ENST00000280083.7:ENST00000341502.9:ENST00000556148.5:ENST00000348007.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	133	2	2.19024	2.28731	2.38438	0.0774181	0.0282917	0.175203	0.122549
chr20	62952889	62952989	7508222	0	+	0.71	(0.58,1]	chr20	783164	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	93	2	1.88377	2.286695	2.68962	0.0502411	0.0339076	0.16215	0.1246
chr17	82001044	82001144	6815307	0	+	0.69	(0.58,1]	chr17	688640	38	INTRON	INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	286	2	2.196	2.286365	2.37673	0.0369399	0.00571592	0.129533	0.0467736
chr16	50551554	50551654	6451442	0	+	0.59	(0.58,1]	chr16	639900	16	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	121	2	2.12641	2.2859249999999998	2.44544	0.0516128	0.0181333	0.148503	0.0955836
chr8	22388954	22389054	3770238	0	+	0.66	(0.58,1]	chr8	362727	91	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	2.00788	2.284365	2.56085	0.0803939	0.0498302	0.177452	0.161202
chr2	9331867	9331965	714337	0	+	0.571429	(0.523,0.58]	chr2	83409	36	INTRON	INTRON	ASAP2	ENSG00000151693.11	ENST00000315273.4:ENST00000281419.8:ENST00000641030.1	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	1.86691	2.28358	2.70025	0.0763549	0.0717156	0.199212	0.174544
chr15	25017478	25017576	6064028	0	+	0.377551	(0.36,0.39]	chr15	595414	24	EXON_LNCRNA	EXON_LNCRNA:INTRON	SNHG14	ENSG00000224078.15	ENST00000551631.7:ENST00000553134.5:ENST00000659029.1:ENST00000656463.1	lncRNA	lncRNA	lncRNA	lncRNA	4	85	2	2.18579	2.2833949999999996	2.381	0.0974673	0.0423665	0.191354	0.149195
chr1	61172324	61172424	147005	0	+	0.29	[0,0.29]	chr1	17147	394	INTRON	INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	3	51	2	2.08668	2.28319	2.4797	0.0920821	0.0662323	0.189694	0.188571
chr22	15818073	15818173	7682904	0	+	0.44	(0.419,0.45]	chr22	803565	1	SS3_PROX	SS3_PROX:INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000383038.7:ENST00000447898.5	lncRNA	lncRNA	lncRNA	lncRNA	5	105	2	2.18148	2.2829300000000003	2.38438	0.0774181	0.043587	0.175203	0.152811
chr22	24101009	24101106	7695371	0	+	0.587629	(0.58,1]	chr22	805517	24	INTRON	INTRON	CABIN1	ENSG00000099991.18	ENST00000263119.10:ENST00000617531.4:ENST00000405822.6:ENST00000398319.6:ENST00000467937.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	79	2	2.11464	2.2821800000000003	2.44972	0.0873232	0.0184955	0.183238	0.096816
chr5	134926956	134927056	2539856	0	+	0.44	(0.419,0.45]	chr5	252048	161	INTRON	INTRON	PCBD2	ENSG00000132570.15	ENST00000512783.5:ENST00000254908.11:ENST00000504352.1:ENST00000510013.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	261	2	2.27865	2.281995	2.28534	0.0595209	0.0146125	0.157706	0.0837727
chr11	65434655	65434755	4871688	0	+	0.52	(0.485,0.523]	chr11	468177	120	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	81	1690	2	1.88763	2.281945	2.67626	0.0196464	0.012032	0.100571	0.0744209
chr16	31183549	31183626	6440292	0	+	0.545455	(0.523,0.58]	chr16	638580	1	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	FUS	ENSG00000089280.19	ENST00000566605.5:ENST00000254108.12:ENST00000380244.7:ENST00000487509.6:ENST00000568685.1:ENST00000487974.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	78	2	2.2167	2.28167	2.34664	0.0865899	0.0413259	0.182221	0.148318
chr20	58678055	58678153	7498457	0	+	0.469388	(0.45,0.485]	chr20	781976	19	UTR3	UTR3:EXON_MRNA:INTRON	STX16:STX16-NPEPL1	ENSG00000124222.22:ENSG00000254995.4	ENST00000361830.7:ENST00000355957.9:ENST00000371141.8:ENST00000359617.8:ENST00000530122.1:ENST00000371132.8:ENST00000358029.8:ENST00000413559.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	81	2	2.22801	2.281555	2.3351	0.0878805	0.0438295	0.183694	0.153511
chr19	952992	953092	7185376	0	+	0.59	(0.58,1]	chr19	730741	199	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	88	2	2.27185	2.28137	2.29089	0.0484517	0.0433824	0.152119	0.145074
chr11	70631729	70631829	5060590	0	-	0.69	(0.58,1]	chr11	492663	1284	INTRON	INTRON	SHANK2	ENSG00000162105.21	ENST00000601538.6:ENST00000409161.5:ENST00000656230.1:ENST00000659264.1:ENST00000338508.9:ENST00000412252.6:ENST00000409530.5:ENST00000449116.6:ENST00000426687.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	4	72	2	2.02776	2.279635	2.53151	0.0700362	0.0446412	0.195209	0.140478
chr20	62922355	62922454	7585558	0	-	0.59596	(0.58,1]	chr20	792927	76	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8	protein_coding	protein_coding	protein_coding	protein_coding	9	135	2	1.64065	2.279455	2.91826	0.0960628	0.0055314	0.189169	0.0456275
chr21	45473794	45473894	7631004	0	+	0.61	(0.58,1]	chr21	797670	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8	protein_coding	protein_coding	protein_coding	protein_coding	4	58	2	2.09894	2.277985	2.45703	0.0933945	0.0411332	0.188571	0.147756
chr16	24985497	24985597	6570789	0	-	0.58	(0.523,0.58]	chr16	655806	61	INTRON	INTRON	ARHGAP17	ENSG00000140750.17	ENST00000289968.11:ENST00000303665.9:ENST00000575975.5:ENST00000455311.6:ENST00000571480.5:ENST00000573625.5:ENST00000573449.5:ENST00000575447.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	77	2	1.97776	2.2777149999999997	2.57767	0.090356	0.0458561	0.186369	0.154743
chr9	96617994	96618094	4345619	0	-	0.64	(0.58,1]	chr9	415196	1	SS5_PROX	SS5_PROX:INTRON	CDC14B	ENSG00000081377.17	ENST00000474602.5:ENST00000412285.6:ENST00000375241.6:ENST00000375240.7:ENST00000463569.5:ENST00000415608.1:ENST00000496750.5:ENST00000463547.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	52	2	1.99855	2.277255	2.55596	0.103709	0.0534085	0.197611	0.167062
chr11	2136311	2136405	4971160	0	-	0.606383	(0.58,1]	chr11	481160	4	INTRON	INTRON	IGF2	ENSG00000167244.22	ENST00000381406.8:ENST00000381395.5:ENST00000416167.7:ENST00000695541.1:ENST00000481781.3:ENST00000434045.6:ENST00000381392.5:ENST00000381389.5:ENST00000418738.2	protein_coding	protein_coding	protein_coding	protein_coding	17	294	2	2.14585	2.277215	2.40858	0.0192818	0.0172584	0.0954446	0.0923873
chr5	74638857	74638955	2691310	0	-	0.397959	(0.39,0.419]	chr5	265803	15	UTR5	UTR5:EXON_MRNA:INTRON	ENC1	ENSG00000171617.15	ENST00000618628.4:ENST00000510316.5:ENST00000302351.9:ENST00000651128.1:ENST00000537006.1:ENST00000508331.1:ENST00000509127.2	protein_coding	protein_coding	protein_coding	protein_coding	6	124	2	2.15817	2.2767049999999998	2.39524	0.0794462	0.0275431	0.176616	0.120112
chrX	133952549	133952649	8115693	0	-	0.5	(0.485,0.523]	chrX	845530	1	SS5_PROX	SS5_PROX:INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	16	248	2	1.89879	2.27654	2.65429	0.0274809	0.0268377	0.119847	0.112113
chr4	183128714	183128814	2167688	0	+	0.39	(0.36,0.39]	chr4	219488	287	INTRON	INTRON	WWC2	ENSG00000151718.16	ENST00000403733.8:ENST00000508614.5:ENST00000448232.6:ENST00000513834.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	85	2	2.21336	2.276115	2.33887	0.0939252	0.0459241	0.188571	0.154743
chr18	58046841	58046937	7071468	0	+	0.40625	(0.39,0.419]	chr18	721084	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5:ENST00000588516.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	125	2	2.21487	2.2760499999999997	2.33723	0.0732643	0.0310948	0.17026	0.127822
chr11	65423272	65423372	4871574	0	+	0.6	(0.58,1]	chr11	468177	6	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000612303.2:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1	lncRNA	lncRNA	lncRNA	lncRNA	124	1887	2	1.91187	2.27568	2.63949	0.0129546	0.00814213	0.0778899	0.0604627
chr10	75481205	75481304	4520970	0	+	0.484848	(0.45,0.485]	chr10	432249	296	INTRON	INTRON	LRMDA	ENSG00000148655.15	ENST00000611255.5	protein_coding	protein_coding	protein_coding	protein_coding	7	122	2	2.25612	2.275405	2.29469	0.0844869	0.0199833	0.181766	0.100864
chr20	44407644	44407722	7482995	0	+	0.551282	(0.523,0.58]	chr20	779655	2	UTR3	UTR3:EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000684476.1:ENST00000684046.1:ENST00000681977.1:ENST00000684136.1:ENST00000619550.5:ENST00000682169.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	155	2	2.00103	2.2753300000000003	2.54963	0.0389647	0.0321288	0.13152	0.12988
chr5	40828230	40828329	2648690	0	-	0.424242	(0.419,0.45]	chr5	262891	31	UTR3	UTR3:EXON_MRNA:SS3_PROX:INTRON	RPL37	ENSG00000145592.14	ENST00000274242.10:ENST00000511787.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	75	2	1.93608	2.275	2.61392	0.0961463	0.0690938	0.19362	0.189169
chrX	133635557	133635656	8112511	0	-	0.393939	(0.39,0.419]	chrX	845480	386	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000669691.1:ENST00000689310.1:ENST00000631057.2:ENST00000692084.1:ENST00000406757.3:ENST00000666673.2:ENST00000692074.1:ENST00000667662.1:ENST00000666017.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	95	2	1.89014	2.27452	2.6589	0.0879325	0.051241	0.183764	0.165164
chr11	65433357	65433457	4871675	0	+	0.38	(0.36,0.39]	chr11	468177	107	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	37	745	2	1.63285	2.27409	2.91533	0.0451328	0.0120392	0.154539	0.0744601
chr19	34386296	34386396	7243213	0	+	0.52	(0.485,0.523]	chr19	741718	43	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	109	2	2.0783	2.273865	2.46943	0.0693	0.0443047	0.194071	0.140478
chr16	50607893	50607993	6452006	0	+	0.53	(0.523,0.58]	chr16	639903	2	SS3_PROX	SS3_PROX:INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	86	2	1.88419	2.272365	2.66054	0.0806884	0.0470504	0.177452	0.156915
chr11	65434955	65435055	4871691	0	+	0.4	(0.39,0.419]	chr11	468177	123	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	36	834	2	1.51964	2.272115	3.02459	0.059175	0.00967352	0.176157	0.0661428
chr3	42647847	42647946	1452470	0	+	0.454545	(0.45,0.485]	chr3	155084	20	UTR3	UTR3:EXON_MRNA	NKTR	ENSG00000114857.19	ENST00000429888.5:ENST00000232978.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	108	2	2.12706	2.2706	2.41414	0.0673284	0.0349313	0.163329	0.136795
chr16	2762249	2762348	6375408	0	+	0.626263	(0.58,1]	chr16	630056	8	CDS	CDS:EXON_MRNA:INTRON	SRRM2	ENSG00000167978.17	ENST00000576924.5:ENST00000301740.13:ENST00000630499.2:ENST00000571378.5	protein_coding	protein_coding	protein_coding	protein_coding	4	69	2	2.15496	2.270015	2.38507	0.057029	0.0548868	0.168717	0.154343
chr1	52913696	52913788	485567	0	-	0.630435	(0.58,1]	chr1	57722	4	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	ECHDC2	ENSG00000121310.17	ENST00000536120.5:ENST00000371522.9:ENST00000460612.5:ENST00000371520.5:ENST00000358358.9:ENST00000476477.6:ENST00000479593.5:ENST00000467988.2:ENST00000487851.5:ENST00000488268.5:ENST00000544365.5:ENST00000495920.5:ENST00000544531.5:ENST00000480312.6:ENST00000542552.1:ENST00000474789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	156	2	2.10224	2.26981	2.43738	0.0310606	0.0261015	0.127822	0.109889
chr7	47367664	47367764	3587468	0	-	0.64	(0.58,1]	chr7	346030	210	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5	protein_coding	protein_coding	protein_coding	protein_coding	5	81	2	2.00788	2.269695	2.53151	0.0498302	0.0446412	0.161202	0.140478
chr7	47276614	47276711	3586543	0	-	0.474227	(0.45,0.485]	chr7	345959	16	UTR3	UTR3:EXON_MRNA	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000428457.1	protein_coding	protein_coding	protein_coding	protein_coding	6	88	2	1.76628	2.2678599999999998	2.76944	0.0716626	0.0618961	0.180615	0.168159
chr9	134373024	134373120	4261154	0	+	0.666667	(0.58,1]	chr9	406315	5	INTRON	INTRON	RXRA	ENSG00000186350.12	ENST00000484822.1:ENST00000481739.2:ENST00000356384.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	3	54	2	2.15135	2.26715	2.38295	0.0825864	0.0730701	0.199669	0.179396
chr11	65422773	65422872	4871569	0	+	0.616162	(0.58,1]	chr11	468177	1	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000612303.2	lncRNA	lncRNA	lncRNA	lncRNA	368	5776	2	2.25547	2.262575	2.26968	0.016372	0.00443905	0.0875545	0.0395837
chr13	112694241	112694340	5652582	0	+	0.525253	(0.523,0.58]	chr13	554894	34	INTRON	INTRON	ATP11A	ENSG00000068650.19	ENST00000375645.8:ENST00000375630.6:ENST00000487903.5	protein_coding	protein_coding	protein_coding	protein_coding	10	145	2	1.87659	2.26214	2.64769	0.0453055	0.0352951	0.14196	0.137983
chr20	62922553	62922653	7585560	0	-	0.53	(0.523,0.58]	chr20	792927	78	INTRON	INTRON	DIDO1	ENSG00000101191.17	ENST00000266070.8:ENST00000395343.6:ENST00000395340.5:ENST00000370371.8:ENST00000370368.5:ENST00000354665.8	protein_coding	protein_coding	protein_coding	protein_coding	8	144	2	1.94733	2.2618400000000003	2.57635	0.0842747	0.0118131	0.181766	0.0746047
chr17	72561515	72561615	6963926	0	-	0.56	(0.523,0.58]	chr17	710389	271	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	7	115	2	2.13918	2.26154	2.3839	0.0679164	0.0270236	0.164413	0.119337
chr17	55308041	55308140	6757544	0	+	0.525253	(0.523,0.58]	chr17	681718	187	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	153	2	1.56141	2.261495	2.96158	0.0652005	0.0271143	0.187093	0.112113
chr20	58682699	58682798	7498504	0	+	0.383838	(0.36,0.39]	chr20	781977	33	INTRON	INTRON	STX16-NPEPL1	ENSG00000254995.4	ENST00000530122.1:ENST00000413559.1	protein_coding	retained_intron	protein_coding	retained_intron:nonsense_mediated_decay	4	72	2	1.97044	2.260525	2.55061	0.10062	0.0637116	0.196131	0.184651
chr21	45501231	45501330	7631317	0	+	0.373737	(0.36,0.39]	chr21	797812	32	INTRON	INTRON	COL18A1	ENSG00000182871.16	ENST00000651438.1:ENST00000355480.10:ENST00000359759.8:ENST00000342220.9	protein_coding	protein_coding	protein_coding	protein_coding	4	72	2	1.97044	2.260525	2.55061	0.10062	0.0637116	0.196131	0.184651
chr20	33521871	33521971	7457863	0	+	0.29	[0,0.29]	chr20	776442	312	INTRON	INTRON	CBFA2T2	ENSG00000078699.22	ENST00000471007.1:ENST00000342704.11:ENST00000375279.6	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	69	2	2.11902	2.2596049999999996	2.40019	0.0883944	0.0358292	0.183874	0.139127
chr3	30612766	30612866	1433153	0	+	0.38	(0.36,0.39]	chr3	152992	54	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4	protein_coding	protein_coding	protein_coding	protein_coding	10	182	2	2.20454	2.25889	2.31324	0.0738784	0.0162882	0.170904	0.0906469
chr2	160466126	160466226	1293212	0	-	0.26	[0,0.29]	chr2	138809	333	INTRON	INTRON	RBMS1	ENSG00000153250.21	ENST00000348849.8:ENST00000474820.5:ENST00000491781.5:ENST00000477486.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	7	114	2	2.11526	2.2586500000000003	2.40204	0.0666535	0.0170499	0.162684	0.0923809
chr16	89295782	89295881	6659763	0	-	0.656566	(0.58,1]	chr16	666648	36	INTRON	INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000644285.1:ENST00000642600.1:ENST00000330736.10:ENST00000642443.1:ENST00000646345.1:ENST00000567699.2:ENST00000562275.6:ENST00000378332.7:ENST00000644784.1:ENST00000642695.1:ENST00000643964.1:ENST00000646838.1:ENST00000642333.1:ENST00000646975.1:ENST00000645278.1:ENST00000564553.5:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	10	130	2	2.15887	2.2563899999999997	2.35391	0.0600041	0.0150779	0.158506	0.0856714
chr13	97232731	97232831	5630908	0	+	0.46	(0.45,0.485]	chr13	553173	98	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000685165.1:ENST00000345429.10:ENST00000469707.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	68	2	1.97875	2.25633	2.53391	0.0985287	0.0598536	0.193064	0.177269
chr20	382726	382826	7414329	0	+	0.5	(0.485,0.523]	chr20	772280	1	SS5_PROX	SS5_PROX:INTRON	TRIB3	ENSG00000101255.12	ENST00000615226.4:ENST00000217233.9:ENST00000449710.5:ENST00000422053.3	protein_coding	protein_coding	protein_coding	protein_coding	9	139	2	2.15288	2.256295	2.35971	0.0702693	0.0205543	0.168159	0.102713
chr13	113330478	113330577	5753235	0	-	0.626263	(0.58,1]	chr13	564094	40	INTRON	INTRON	GRTP1	ENSG00000139835.14	ENST00000375431.9:ENST00000620217.4:ENST00000375430.8:ENST00000326039.3	protein_coding	protein_coding	protein_coding	protein_coding	5	80	2	2.00788	2.255635	2.50339	0.0498302	0.0468259	0.161202	0.143232
chr16	19709908	19710008	6561440	0	-	0.63	(0.58,1]	chr16	654285	23	INTRON	INTRON	KNOP1	ENSG00000103550.14	ENST00000219837.12:ENST00000568230.5:ENST00000567367.1	protein_coding	protein_coding	protein_coding	protein_coding	3	52	2	2.0383	2.2551699999999997	2.47204	0.0978534	0.0623526	0.191981	0.181127
chr11	65437751	65437851	4871719	0	+	0.49	(0.485,0.523]	chr11	468177	151	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	47	855	2	1.75909	2.255105	2.75112	0.0285696	0.0119631	0.123257	0.0743405
chr22	28910604	28910703	7705547	0	+	0.525253	(0.523,0.58]	chr22	806317	262	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7	protein_coding	protein_coding	protein_coding	protein_coding	11	190	2	2.02624	2.254665	2.48309	0.0360462	0.0273074	0.127853	0.119337
chr4	1327526	1327626	1995314	0	+	0.63	(0.58,1]	chr4	203266	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MAEA	ENSG00000090316.16	ENST00000505177.6:ENST00000303400.9:ENST00000264750.10:ENST00000503653.5:ENST00000512308.5:ENST00000502558.5:ENST00000509254.5:ENST00000514708.5:ENST00000503693.1:ENST00000509531.5:ENST00000510794.5:ENST00000505839.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	65	2	1.80292	2.2533600000000003	2.7038	0.0648563	0.059442300000000003	0.176598	0.162218
chr2	222871351	222871450	1037805	0	+	0.484848	(0.45,0.485]	chr2	113181	54	INTRON	INTRON	ACSL3	ENSG00000123983.15	ENST00000392066.7:ENST00000407441.5:ENST00000680251.1:ENST00000679541.1:ENST00000681906.1:ENST00000679545.1:ENST00000679932.1:ENST00000680100.1:ENST00000680475.1:ENST00000680525.1:ENST00000680420.1:ENST00000681326.1:ENST00000681292.1:ENST00000681017.1:ENST00000680382.1:ENST00000535678.2:ENST00000680395.1:ENST00000680736.1:ENST00000679546.1:ENST00000680147.1:ENST00000357430.8:ENST00000681009.1:ENST00000679514.1:ENST00000681697.1:ENST00000680921.1:ENST00000681383.1:ENST00000413316.1:ENST00000679558.1:ENST00000680684.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	94	2	2.16768	2.252485	2.33729	0.0752756	0.0412837	0.173058	0.148252
chr8	22374130	22374230	3770089	0	+	0.62	(0.58,1]	chr8	362721	60	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	23	329	2	2.02239	2.25235	2.48231	0.0183843	0.0147832	0.0926	0.0847366
chr11	65427266	65427366	4871614	0	+	0.54	(0.523,0.58]	chr11	468177	46	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	153	2995	2	2.1296	2.251615	2.37363	0.0202026	0.00956065	0.0975053	0.0652103
chr3	13202125	13202225	1691163	0	-	0.39	(0.36,0.39]	chr3	176566	376	INTRON	INTRON	IQSEC1	ENSG00000144711.16	ENST00000648114.1	protein_coding	protein_coding	protein_coding	protein_coding	5	83	2	1.95261	2.25161	2.55061	0.10062	0.0528787	0.196131	0.167062
chr1	8464569	8464669	392183	0	-	0.54	(0.523,0.58]	chr1	44985	259	INTRON	INTRON	RERE	ENSG00000142599.19	ENST00000337907.7:ENST00000400908.7:ENST00000377464.5:ENST00000400907.6:ENST00000656437.1:ENST00000464972.5:ENST00000659924.1	protein_coding	protein_coding	protein_coding	protein_coding	4	79	2	2.14543	2.25139	2.35735	0.0706395	0.0609283	0.179956	0.168159
chr20	58898846	58898940	7499463	0	+	0.468085	(0.45,0.485]	chr20	782118	16	EXON_MRNA	EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	GNAS	ENSG00000087460.29	ENST00000313949.11:ENST00000371075.7:ENST00000419558.7:ENST00000371098.6:ENST00000657090.1:ENST00000453292.7:ENST00000306090.12:ENST00000491348.5:ENST00000472183.6:ENST00000462499.6:ENST00000482112.6:ENST00000663479.2:ENST00000493744.5:ENST00000490374.6:ENST00000467227.6:ENST00000676826.2:ENST00000481768.6:ENST00000371100.9:ENST00000371102.8:ENST00000464624.7:ENST00000349036.9:ENST00000423897.7:ENST00000464960.5:ENST00000488546.6:ENST00000667293.2:ENST00000481039.6:ENST00000467321.6:ENST00000477931.5:ENST00000485673.6:ENST00000470512.6:ENST00000464788.6:ENST00000469431.6:ENST00000604005.6:ENST00000478585.6:ENST00000480975.5:ENST00000480232.6:ENST00000484504.5:ENST00000683015.1:ENST00000461152.6:ENST00000371095.7:ENST00000265620.11:ENST00000354359.12:ENST00000371085.8:ENST00000468895.6:ENST00000371081.5:ENST00000338783.7:ENST00000682803.1:ENST00000488652.6:ENST00000476935.6:ENST00000492907.6:ENST00000603546.2:ENST00000684284.1:ENST00000682134.1:ENST00000682829.1:ENST00000483387.2:ENST00000487862.5:ENST00000496934.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	183	2	1.72237	2.25056	2.77875	0.0514619	0.0280906	0.165765	0.113839
chr22	28932179	28932279	7705763	0	+	0.51	(0.485,0.523]	chr22	806321	143	INTRON	INTRON	ZNRF3	ENSG00000183579.16	ENST00000544604.7:ENST00000402174.5	protein_coding	protein_coding	protein_coding	protein_coding	5	75	2	1.75726	2.2491950000000003	2.74113	0.0719691	0.0714335	0.198579	0.168159
chr3	172090383	172090482	1627971	0	+	0.444444	(0.419,0.45]	chr3	170535	431	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	116	2	2.23519	2.24897	2.26275	0.091268	0.0306381	0.188067	0.12696
chr11	2688598	2688698	4972197	0	-	0.58	(0.523,0.58]	chr11	481197	804	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	13	167	2	1.49999	2.2481999999999998	2.99641	0.0678892	0.0255625	0.193274	0.109062
chr8	141413552	141413652	3925972	0	+	0.66	(0.58,1]	chr8	374790	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PTP4A3	ENSG00000184489.13	ENST00000520105.5:ENST00000521578.6:ENST00000523147.5:ENST00000329397.6	protein_coding	protein_coding	protein_coding	protein_coding	3	47	2	2.09276	2.247465	2.40217	0.100879	0.0619333	0.196131	0.180615
chr10	112195346	112195446	4760740	0	-	0.6	(0.58,1]	chr10	455255	117	INTRON	INTRON	GPAM	ENSG00000119927.14	ENST00000480130.5:ENST00000498541.1	protein_coding	processed_transcript	protein_coding	processed_transcript	10	133	2	2.22208	2.247115	2.27215	0.074035	0.0111749	0.171168	0.071709
chr16	87383104	87383204	6655008	0	-	0.7	(0.58,1]	chr16	665722	3	SS5_PROX	SS5_PROX:INTRON	FBXO31	ENSG00000103264.18	ENST00000311635.12:ENST00000565593.1:ENST00000618298.6:ENST00000636077.1:ENST00000569412.5:ENST00000563956.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	79	2	1.87437	2.2468850000000002	2.6194	0.0953385	0.0202577	0.189038	0.102015
chr11	65437951	65438050	4871721	0	+	0.545455	(0.523,0.58]	chr11	468177	153	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	68	1382	2	1.80272	2.24568	2.68864	0.0245271	0.0121028	0.113835	0.074693
chr11	65425169	65425269	4871593	0	+	0.36	(0.33,0.36]	chr11	468177	25	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1	lncRNA	lncRNA	lncRNA	lncRNA	131	2233	2	1.76445	2.24486	2.72527	0.0267652	0.0124293	0.11862	0.0761905
chr3	120630690	120630788	1887414	0	-	0.326531	(0.29,0.33]	chr3	191478	18	INTRON	INTRON	HGD	ENSG00000113924.12	ENST00000283871.10:ENST00000492108.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	141	2	1.83978	2.24486	2.64994	0.0801846	0.0224122	0.177452	0.108193
chr17	82001744	82001844	6815314	0	+	0.68	(0.58,1]	chr17	688640	45	INTRON	INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	81	2	1.82737	2.242535	2.6577	0.0695799	0.0416055	0.167028	0.149021
chr15	70097487	70097585	6312700	0	-	0.632653	(0.58,1]	chr15	622362	8	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	TLE3	ENSG00000140332.18	ENST00000558939.5:ENST00000451782.7:ENST00000317509.12:ENST00000557919.5:ENST00000561453.5:ENST00000557997.5:ENST00000559191.5:ENST00000559574.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	4	65	2	2.15135	2.23914	2.32693	0.0825864	0.038688	0.179396	0.142489
chr8	122785745	122785845	3909693	0	+	0.63	(0.58,1]	chr8	373449	34	INTRON	INTRON	ZHX2	ENSG00000178764.8	ENST00000314393.6	protein_coding	protein_coding	protein_coding	protein_coding	4	67	2	2.15496	2.238515	2.32207	0.0631758	0.0548868	0.168717	0.161352
chr1	52551630	52551730	485206	0	-	0.46	(0.45,0.485]	chr1	57650	126	INTRON	INTRON	TUT4	ENSG00000134744.14	ENST00000371544.7:ENST00000257177.9:ENST00000528642.5:ENST00000484723.6:ENST00000473856.5:ENST00000355809.4:ENST00000470626.1:ENST00000524582.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	4	78	2	2.14026	2.23768	2.3351	0.0991821	0.0438295	0.194246	0.153511
chr17	7111846	7111944	6847752	0	-	0.459184	(0.45,0.485]	chr17	693423	26	INTRON	INTRON	ASGR2	ENSG00000161944.17	ENST00000254850.11:ENST00000355035.9:ENST00000691900.1:ENST00000446679.6:ENST00000576487.5:ENST00000450034.7:ENST00000574868.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	139	2	1.96447	2.237545	2.51062	0.058349	0.0330264	0.155373	0.132752
chr1	61093677	61093777	146214	0	+	0.4	(0.39,0.419]	chr1	17139	51	EXON_MRNA	EXON_MRNA:INTRON	NFIA	ENSG00000162599.17	ENST00000371191.5:ENST00000664495.1:ENST00000476646.5:ENST00000407417.7:ENST00000479364.1:ENST00000371189.8:ENST00000670151.1:ENST00000664149.1:ENST00000662015.1:ENST00000403491.8:ENST00000371187.7:ENST00000485903.6:ENST00000371185.6:ENST00000371184.6:ENST00000603233.2:ENST00000496712.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	82	2	1.88999	2.23631	2.58263	0.0970705	0.0597283	0.190588	0.177269
chr9	124495530	124495629	4402680	0	-	0.686869	(0.58,1]	chr9	419817	20	INTRON	INTRON	NR5A1	ENSG00000136931.10	ENST00000620110.4:ENST00000373588.9:ENST00000373587.3	protein_coding	protein_coding	protein_coding	protein_coding	4	64	2	2.0383	2.234725	2.43115	0.0978534	0.0309513	0.191981	0.127822
chr19	34391395	34391495	7243264	0	+	0.48	(0.45,0.485]	chr19	741718	94	INTRON	INTRON	GPI	ENSG00000105220.17	ENST00000415930.8:ENST00000588991.7:ENST00000356487.11:ENST00000647446.1:ENST00000586425.2:ENST00000643067.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	11	221	2	2.20796	2.23406	2.26016	0.0453929	0.0261822	0.142209	0.117343
chr20	44424639	44424670	7483175	0	+	0.322581	(0.29,0.33]	chr20	779691	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000316099.10:ENST00000372920.1:ENST00000415691.2:ENST00000619550.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	74	2	1.81068	2.2338649999999998	2.65705	0.0789527	0.0651238	0.186886	0.175712
chr10	79174217	79174317	4533099	0	+	0.67	(0.58,1]	chr10	432438	117	INTRON	INTRON	ZMIZ1	ENSG00000108175.19	ENST00000334512.10	protein_coding	protein_coding	protein_coding	protein_coding	5	79	2	1.96011	2.23175	2.50339	0.0549599	0.0468259	0.168901	0.143232
chr11	65423971	65424071	4871581	0	+	0.61	(0.58,1]	chr11	468177	13	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000612303.2:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000642367.1	lncRNA	lncRNA	lncRNA	lncRNA	195	2919	2	1.92985	2.2303699999999997	2.53089	0.0118273	0.00981122	0.0746916	0.0668871
chr11	2686798	2686898	4972179	0	-	0.58	(0.523,0.58]	chr11	481197	786	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	8	136	2	2.16546	2.229805	2.29415	0.0714042	0.0188816	0.168159	0.0982978
chr18	58045183	58045281	7071446	0	+	0.622449	(0.58,1]	chr18	721071	2	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000617539.1:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	85	2	2.21459	2.22977	2.24495	0.0524165	0.0487458	0.160725	0.149044
chr16	16377320	16377420	6409347	0	+	0.66	(0.58,1]	chr16	633707	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PKD1P2	ENSG00000227827.3	ENST00000532739.1	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	unprocessed_pseudogene	7	106	2	2.19749	2.2297450000000003	2.262	0.0567957	0.0213401	0.154343	0.104721
chr17	55304648	55304748	6757510	0	+	0.57	(0.523,0.58]	chr17	681718	153	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	142	2	2.03716	2.22806	2.4189600000000002	0.0736343	0.0172594	0.17037	0.0923873
chr15	34533185	34533260	6217938	0	-	0.533333	(0.523,0.58]	chr15	612352	1	CDS_START	CDS_START:CDS:EXON_MRNA:SS3_PROX:INTRON	GOLGA8B	ENSG00000215252.12	ENST00000683415.1:ENST00000342314.9:ENST00000569100.5:ENST00000438958.2:ENST00000484716.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	171	2	2.22118	2.226765	2.23235	0.0543352	0.0193363	0.152012	0.0994526
chr2	215367770	215367862	1367947	0	-	0.478261	(0.45,0.485]	chr2	145593	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	FN1	ENSG00000115414.21	ENST00000421182.5:ENST00000323926.10:ENST00000336916.8:ENST00000357867.8:ENST00000359671.5:ENST00000443816.5:ENST00000446046.5:ENST00000492816.6:ENST00000354785.11:ENST00000432072.6:ENST00000356005.8:ENST00000456923.5:ENST00000480024.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	113	2	2.11781	2.226255	2.3347	0.0793672	0.0291402	0.176565	0.124888
chr17	55306843	55306943	6757532	0	+	0.45	(0.419,0.45]	chr17	681718	175	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	150	2	1.66365	2.22613	2.78861	0.0670439	0.0432906	0.191969	0.138758
chr16	87918660	87918760	6657552	0	-	0.48	(0.45,0.485]	chr16	666059	134	INTRON	INTRON	CA5A	ENSG00000174990.8	ENST00000649158.1:ENST00000648177.1:ENST00000649794.3:ENST00000648022.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	141	2	2.09669	2.225245	2.3538	0.0818382	0.017414	0.17937	0.0928044
chr1	12588126	12588226	402484	0	-	0.48	(0.45,0.485]	chr1	46222	71	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000430996.2:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	95	2	1.9378	2.22421	2.51062	0.0646604	0.058349	0.185606	0.155373
chr5	74637980	74638077	2691301	0	-	0.42268	(0.419,0.45]	chr5	265803	6	UTR5	UTR5:EXON_MRNA:SS3_PROX:INTRON	ENC1	ENSG00000171617.15	ENST00000618628.4:ENST00000510316.5:ENST00000302351.9:ENST00000651128.1:ENST00000537006.1:ENST00000508331.1:ENST00000509127.2	protein_coding	protein_coding	protein_coding	protein_coding	6	114	2	2.08517	2.223015	2.36086	0.0799528	0.0416703	0.177133	0.149021
chr17	55272684	55272784	6757185	0	+	0.45	(0.419,0.45]	chr17	681704	42	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	255	2	2.08758	2.222035	2.35649	0.0660473	0.0153456	0.162385	0.0869129
chr20	35742219	35742312	7554938	0	-	0.612903	(0.58,1]	chr20	788890	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	RBM39	ENSG00000131051.24	ENST00000253363.11:ENST00000639702.1:ENST00000656873.1:ENST00000463004.5:ENST00000361162.10:ENST00000403542.6:ENST00000338163.10:ENST00000528062.7:ENST00000429968.5:ENST00000444878.5:ENST00000374038.7:ENST00000453310.5:ENST00000397370.3:ENST00000463098.5:ENST00000461849.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	128	2	1.58925	2.22189	2.85453	0.0551407	0.0251699	0.169218	0.107898
chr15	98731821	98731921	6194163	0	+	0.52	(0.485,0.523]	chr15	609659	234	INTRON	INTRON	IGF1R	ENSG00000140443.15	ENST00000650285.1:ENST00000649865.1:ENST00000559925.5:ENST00000558355.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	125	2	1.91222	2.2218299999999997	2.53144	0.0886157	0.0180879	0.183874	0.0954351
chr1	12614961	12615061	402754	0	-	0.55	(0.523,0.58]	chr1	46226	188	INTRON	INTRON	DHRS3	ENSG00000162496.9	ENST00000616661.5:ENST00000464917.5:ENST00000482265.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	11	193	2	1.76587	2.22014	2.67441	0.0485425	0.0259954	0.160473	0.109673
chr11	65434855	65434955	4871690	0	+	0.39	(0.36,0.39]	chr11	468177	122	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	33	731	2	1.87552	2.22002	2.56452	0.0302235	0.0207293	0.126768	0.098764
chr8	120752390	120752490	4059427	0	-	0.34	(0.33,0.36]	chr8	386607	581	INTRON	INTRON	SNTB1	ENSG00000172164.15	ENST00000395601.7:ENST00000517992.2:ENST00000648490.1:ENST00000519177.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	96	2	1.6817	2.21962	2.75754	0.0735337	0.0671781	0.192268	0.17026
chr15	67068313	67068413	6139099	0	+	0.5	(0.485,0.523]	chr15	603933	4	SS5_PROX	SS5_PROX:INTRON	SMAD3	ENSG00000166949.17	ENST00000559460.5:ENST00000327367.9:ENST00000679624.1	protein_coding	protein_coding	protein_coding	protein_coding	4	78	2	2.0783	2.219005	2.35971	0.0702693	0.0693	0.194071	0.168159
chr17	55298562	55298662	6757449	0	+	0.33	(0.29,0.33]	chr17	681718	92	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	207	2	1.66258	2.218945	2.77531	0.104787	0.00496254	0.198727	0.0425811
chr14	30922304	30922404	5950951	0	-	0.38	(0.36,0.39]	chr14	583071	28	INTRON	INTRON	STRN3	ENSG00000196792.12	ENST00000355683.9:ENST00000357479.10:ENST00000555358.5:ENST00000366206.2:ENST00000556577.1:ENST00000554991.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	98	2	2.04492	2.2188749999999997	2.39283	0.0733114	0.0554416	0.17026	0.170061
chr2	98606799	98606895	1227679	0	-	0.604167	(0.58,1]	chr2	132916	11	INTRON	INTRON	COA5	ENSG00000183513.9	ENST00000328709.8:ENST00000483527.5:ENST00000409997.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	65	2	2.21459	2.2183349999999997	2.22208	0.074035	0.0487458	0.171168	0.160725
chr11	65428964	65429063	4871631	0	+	0.282828	[0,0.29]	chr11	468177	63	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	59	942	2	2.06449	2.218245	2.372	0.0163855	0.0119943	0.0876054	0.0754622
chr13	98240192	98240292	5634632	0	+	0.49	(0.485,0.523]	chr13	553474	264	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000376581.9:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	7	141	2	2.02572	2.216215	2.40671	0.0532895	0.0408356	0.167062	0.13606
chr13	50438341	50438441	5596999	0	+	0.54	(0.523,0.58]	chr13	551641	44	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000485007.5:ENST00000475913.5:ENST00000470726.7:ENST00000479420.5:ENST00000474630.6:ENST00000491482.5:ENST00000647700.1:ENST00000484869.6:ENST00000469095.6:ENST00000462427.2:ENST00000470593.5:ENST00000472136.5:ENST00000498557.5:ENST00000460525.6	lncRNA	lncRNA	lncRNA	lncRNA	5	73	2	1.76996	2.21525	2.66054	0.0806884	0.0693079	0.194071	0.177452
chr17	77376319	77376398	6804127	0	+	0.658228	(0.58,1]	chr17	686754	4	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1:ENST00000329047.13:ENST00000588575.1:ENST00000590595.1:ENST00000590294.6:ENST00000591934.1:ENST00000588690.6:ENST00000592098.1:ENST00000423034.6:ENST00000590059.5:ENST00000587514.1:ENST00000590586.1:ENST00000592407.1:ENST00000427674.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	3	46	2	2.02776	2.214965	2.40217	0.100879	0.0700362	0.196131	0.195209
chr20	62956164	62956264	7508257	0	+	0.6	(0.58,1]	chr20	783170	25	INTRON	INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5:ENST00000411611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	63	2	1.99855	2.21485	2.43115	0.103709	0.0309513	0.197611	0.127822
chr10	102646321	102646420	4576487	0	+	0.616162	(0.58,1]	chr10	437280	1	INTRON	INTRON	TRIM8	ENSG00000171206.15	ENST00000643721.2:ENST00000302424.12:ENST00000642664.1:ENST00000462202.3:ENST00000643376.1:ENST00000645961.1:ENST00000479004.2:ENST00000646349.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	106	2	1.61747	2.21339	2.80931	0.0654544	0.0273431	0.18777	0.112372
chr16	16159181	16159281	6556447	0	-	0.5	(0.485,0.523]	chr16	653067	3	SS5_PROX	SS5_PROX:INTRON	ABCC6	ENSG00000091262.17	ENST00000205557.12:ENST00000622290.5:ENST00000456970.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	142	2	2.09094	2.212045	2.33315	0.0676846	0.0213218	0.164091	0.104644
chr2	71118007	71118087	1181549	0	-	0.6125	(0.58,1]	chr2	128612	3	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MCEE	ENSG00000124370.11	ENST00000413592.5:ENST00000244217.6:ENST00000462609.2	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	3	51	2	2.0383	2.2106250000000003	2.38295	0.0978534	0.0730701	0.199669	0.191981
chr11	65433457	65433557	4871676	0	+	0.32	(0.29,0.33]	chr11	468177	108	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	44	800	2	2.15697	2.21033	2.26369	0.0262481	0.0123234	0.11036	0.0762531
chr7	73595136	73595236	3602800	0	-	0.62	(0.58,1]	chr7	347606	1	SS5_PROX	SS5_PROX:INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	176	2	2.06061	2.20975	2.35889	0.0349912	0.0179013	0.12704	0.0948316
chr4	2824730	2824828	2000364	0	+	0.714286	(0.58,1]	chr4	203969	1	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SH3BP2	ENSG00000087266.17	ENST00000503219.5:ENST00000512131.5:ENST00000503393.8:ENST00000510074.5:ENST00000511237.5:ENST00000504294.5:ENST00000508385.5:ENST00000513020.5:ENST00000511663.5:ENST00000512014.5:ENST00000513095.5:ENST00000502260.5:ENST00000435136.8:ENST00000511185.5:ENST00000511747.6:ENST00000509677.5:ENST00000356331.9:ENST00000515737.5:ENST00000506932.1:ENST00000515183.5:ENST00000505941.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	86	2	2.18715	2.20929	2.23143	0.0781652	0.0229637	0.175203	0.109418
chr17	48999169	48999269	6750038	0	+	0.61	(0.58,1]	chr17	680299	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	IGF2BP1	ENSG00000159217.10	ENST00000290341.8:ENST00000510023.5:ENST00000431824.2:ENST00000515586.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	5	63	2	1.76073	2.209215	2.6577	0.0695799	0.0647557	0.185835	0.167028
chr13	99205806	99205906	5636893	0	+	0.6	(0.58,1]	chr13	553687	2	EXON_SMALL	EXON_SMALL:INTRON	UBAC2:RN7SKP9	ENSG00000134882.16:ENSG00000201793.1	ENST00000355700.9:ENST00000403766.8:ENST00000468067.5:ENST00000473091.5:ENST00000376440.6:ENST00000457666.1:ENST00000364923.1	misc_RNA	misc_RNA	misc_RNA:protein_coding	misc_RNA:protein_coding:processed_transcript	79	937	2	1.48349	2.208495	2.9335	0.0407402	0.00526587	0.146726	0.0478192
chr6	157311285	157311385	3298404	0	-	0.52	(0.485,0.523]	chr6	319197	179	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	17	286	2	2.20172	2.208475	2.21523	0.0424913	0.014518	0.13762	0.083636
chr8	17565442	17565540	3763701	0	+	0.367347	(0.36,0.39]	chr8	361565	4	UTR3	UTR3:EXON_MRNA	SLC7A2	ENSG00000003989.18	ENST00000494857.6:ENST00000470360.5:ENST00000004531.14:ENST00000398090.3	protein_coding	protein_coding	protein_coding	protein_coding	9	173	2	1.85828	2.2084449999999998	2.55861	0.0880449	0.0193249	0.183874	0.0994526
chr20	37506535	37506633	7559833	0	-	0.489796	(0.485,0.523]	chr20	789576	27	INTRON	INTRON	BLCAP	ENSG00000166619.15	ENST00000411780.1:ENST00000467603.1	protein_coding	processed_transcript	protein_coding	processed_transcript	6	100	2	2.02817	2.20722	2.38627	0.067556	0.0416301	0.163788	0.149021
chr11	2693796	2693896	4972249	0	-	0.6	(0.58,1]	chr11	481197	856	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	13	178	2	2.12772	2.205705	2.28369	0.0527652	0.00991304	0.14912	0.0666221
chr20	3805541	3805637	7421609	0	+	0.479167	(0.45,0.485]	chr20	773159	7	UTR3	UTR3:EXON_MRNA	CDC25B	ENSG00000101224.18	ENST00000344256.10:ENST00000379598.9:ENST00000439880.6:ENST00000245960.10	protein_coding	protein_coding	protein_coding	protein_coding	4	77	2	2.17011	2.2056500000000003	2.24119	0.0952161	0.0525018	0.189038	0.167062
chr2	231038599	231038699	1047508	0	+	0.64	(0.58,1]	chr2	114044	4	SS5_PROX	SS5_PROX:INTRON	C2orf72	ENSG00000204128.6	ENST00000373640.5:ENST00000477463.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	9	132	2	1.76343	2.20355	2.64367	0.0787473	0.0114303	0.175303	0.0724212
chr21	44873401	44873501	7678577	0	-	0.83	(0.58,1]	chr21	802778	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	27	557	2	1.61013	2.20115	2.79217	0.0499089	0.00716799	0.161301	0.0563801
chr2	101728831	101728931	860944	0	+	0.34	(0.33,0.36]	chr2	97528	299	INTRON	INTRON	MAP4K4	ENSG00000071054.17	ENST00000427603.5:ENST00000324219.9:ENST00000350878.9:ENST00000425019.6:ENST00000625522.3:ENST00000413150.6:ENST00000634702.1:ENST00000456652.5:ENST00000347699.8:ENST00000417294.5	protein_coding	protein_coding	protein_coding	protein_coding	5	77	2	1.83663	2.200335	2.56404	0.0954498	0.0645323	0.189038	0.185295
chr2	88127314	88127382	1215125	0	-	0.426471	(0.419,0.45]	chr2	130936	2	INTRON	INTRON	FABP1	ENSG00000163586.10	ENST00000295834.8:ENST00000393750.3:ENST00000495375.1:ENST00000472846.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	112	2	2.16213	2.19964	2.23715	0.0944246	0.0356487	0.188571	0.138455
chr7	73603090	73603190	3602888	0	-	0.63	(0.58,1]	chr7	347634	30	INTRON	INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1:ENST00000488212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	75	2	2.1424	2.19929	2.25618	0.0701734	0.0374477	0.168023	0.139793
chr18	711560	711659	7103100	0	-	0.606061	(0.58,1]	chr18	723444	46	INTRON	INTRON	ENOSF1	ENSG00000132199.20	ENST00000647584.2:ENST00000383578.7:ENST00000340116.12:ENST00000581475.5:ENST00000580982.5:ENST00000585128.6:ENST00000584453.5:ENST00000578651.5:ENST00000585004.5:ENST00000583771.1:ENST00000580605.5:ENST00000581332.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	103	2	1.99031	2.1980649999999997	2.40582	0.0796315	0.0149737	0.176933	0.0851167
chr11	2697294	2697394	4972284	0	-	0.37	(0.36,0.39]	chr11	481197	891	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	13	236	2	1.98593	2.19716	2.40839	0.0785657	0.011881	0.175203	0.0748144
chr17	17822118	17822218	6865742	0	-	0.49	(0.485,0.523]	chr17	695915	12	INTRON	INTRON	SREBF1	ENSG00000072310.18	ENST00000261646.11:ENST00000395757.6:ENST00000355815.8:ENST00000423161.3:ENST00000583732.1:ENST00000476994.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	112	2	2.06555	2.196035	2.32652	0.0556362	0.0492547	0.160725	0.154188
chr3	32819132	32819232	1438883	0	+	0.5	(0.485,0.523]	chr3	153400	2	SS5_PROX	SS5_PROX:INTRON	TRIM71	ENSG00000206557.6	ENST00000383763.6	protein_coding	protein_coding	protein_coding	protein_coding	7	110	2	2.00448	2.1953750000000003	2.38627	0.067556	0.0367583	0.163788	0.139793
chr21	44863117	44863216	7678469	0	-	0.656566	(0.58,1]	chr21	802764	13	INTRON	INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000474737.5:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	13	231	2	2.03303	2.19369	2.35435	0.0363214	0.0224516	0.139793	0.102751
chr11	65435354	65435454	4871695	0	+	0.32	(0.29,0.33]	chr11	468177	127	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	31	540	2	1.95202	2.1930899999999998	2.43416	0.0216903	0.0213894	0.10496	0.100615
chr3	30637146	30637246	1433398	0	+	0.39	(0.36,0.39]	chr3	153006	39	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4:ENST00000673250.1:ENST00000672866.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	21	374	2	1.92886	2.192885	2.45691	0.0752154	0.00771428	0.172942	0.0568313
chr19	1411670	1411769	7187463	0	+	0.616162	(0.58,1]	chr19	731286	12	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	103	2	1.88213	2.19276	2.50339	0.0468259	0.0367467	0.143232	0.139793
chr19	6712844	6712925	7322902	0	-	0.592593	(0.58,1]	chr19	756529	2	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695654.1:ENST00000695692.1:ENST00000695652.1:ENST00000594270.5:ENST00000597442.5:ENST00000595577.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	77	2	1.91069	2.1927	2.47471	0.0607034	0.0491463	0.179468	0.146142
chr11	65436852	65436952	4871710	0	+	0.47	(0.45,0.485]	chr11	468177	142	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	36	675	2	2.09828	2.192465	2.28665	0.0400493	0.0108135	0.134101	0.0705742
chr16	89489037	89489115	6661725	0	-	0.423077	(0.419,0.45]	chr16	666756	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	ANKRD11	ENSG00000167522.17	ENST00000301030.10:ENST00000378330.7:ENST00000642600.1:ENST00000330736.10:ENST00000567699.2:ENST00000378332.7:ENST00000642695.1:ENST00000643964.1:ENST00000646975.1:ENST00000645278.1:ENST00000646166.1:ENST00000645844.1:ENST00000647213.1:ENST00000562816.5:ENST00000644045.1:ENST00000643147.1:ENST00000568512.6:ENST00000566973.1:ENST00000646413.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	92	2	1.80628	2.19129	2.5763	0.100818	0.0615836	0.196131	0.18013
chr22	15818273	15818373	7682906	0	+	0.5	(0.485,0.523]	chr22	803565	3	SS3_PROX	SS3_PROX:INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000383038.7:ENST00000447898.5	lncRNA	lncRNA	lncRNA	lncRNA	9	145	2	2.13203	2.190705	2.24938	0.0627206	0.0241142	0.160608	0.1126
chr17	77297391	77297491	6803324	0	+	0.56	(0.523,0.58]	chr17	686716	21	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	87	2	2.07805	2.190385	2.30272	0.076523	0.0476935	0.174882	0.158666
chr18	58045888	58045921	7071457	0	+	0.575758	(0.523,0.58]	chr18	721080	1	SS5_PROX	SS5_PROX:INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	90	2	1.93897	2.188295	2.43762	0.0994044	0.0343548	0.194647	0.134666
chr1	16142026	16142126	404016	0	-	0.54	(0.523,0.58]	chr1	46483	32	INTRON	INTRON	EPHA2	ENSG00000142627.13	ENST00000358432.8:ENST00000480202.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	73	2	2.12522	2.18738	2.24954	0.0984283	0.0500176	0.192982	0.161481
chr11	68471707	68471806	4883590	0	+	0.474747	(0.45,0.485]	chr11	470696	105	INTRON	INTRON	PPP6R3	ENSG00000110075.15	ENST00000530427.5:ENST00000528635.5:ENST00000529907.5:ENST00000533127.5:ENST00000534534.5:ENST00000529344.5:ENST00000524845.5:ENST00000393800.7:ENST00000265637.8:ENST00000524904.5:ENST00000393801.7:ENST00000265636.9:ENST00000529710.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	103	2	1.88471	2.185905	2.4871	0.0604398	0.0572817	0.174149	0.158506
chr6	169706848	169706937	3304949	0	-	0.348315	(0.33,0.36]	chr6	319985	8	INTRON	INTRON	PHF10	ENSG00000130024.15	ENST00000339209.9:ENST00000366780.8:ENST00000621772.4	protein_coding	protein_coding	protein_coding	protein_coding	9	136	2	1.69826	2.18588	2.6735	0.0597984	0.0460415	0.177269	0.142875
chr2	215432733	215432823	1368643	0	-	0.4	(0.39,0.419]	chr2	145798	4	INTRON	INTRON	FN1	ENSG00000115414.21	ENST00000421182.5:ENST00000323926.10:ENST00000336916.8:ENST00000357867.8:ENST00000359671.5:ENST00000443816.5:ENST00000446046.5:ENST00000354785.11:ENST00000432072.6:ENST00000356005.8:ENST00000426059.1	protein_coding	protein_coding	protein_coding	protein_coding	8	132	2	1.66346	2.185415	2.70737	0.0712582	0.0466115	0.198282	0.143232
chrX	109688520	109688619	8091016	0	-	0.444444	(0.419,0.45]	chrX	843698	27	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000505855.1:ENST00000508092.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	150	2	2.15002	2.18535	2.22068	0.0755036	0.0308223	0.173479	0.127663
chr13	50275845	50275945	5595358	0	+	0.44	(0.419,0.45]	chr13	551552	4	INTRON	INTRON	DLEU1	ENSG00000176124.15	ENST00000467721.5:ENST00000468522.5:ENST00000490577.5:ENST00000491341.5:ENST00000491615.5:ENST00000463474.7:ENST00000468168.5:ENST00000476738.5:ENST00000461527.7:ENST00000486895.5:ENST00000485007.5:ENST00000475913.5:ENST00000484529.5:ENST00000473075.3:ENST00000483444.5	lncRNA	lncRNA	lncRNA	lncRNA	5	81	2	1.79421	2.1852549999999997	2.5763	0.100818	0.0726944	0.199502	0.196131
chr16	46903964	46904063	6442623	0	+	0.535354	(0.523,0.58]	chr16	639007	28	INTRON	INTRON	GPT2	ENSG00000166123.14	ENST00000340124.9:ENST00000562132.5:ENST00000440783.2	protein_coding	protein_coding	protein_coding	protein_coding	8	119	2	1.7668	2.184985	2.60317	0.0531659	0.048595	0.167062	0.145074
chr14	19305278	19305373	5928415	0	-	0.6	(0.58,1]	chr14	580404	9	INTRON	INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	4	54	2	1.91069	2.18386	2.45703	0.0933945	0.0607034	0.188571	0.179468
chr6	157314283	157314382	3298434	0	-	0.535354	(0.523,0.58]	chr6	319197	209	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	30	471	2	1.90484	2.18262	2.4604	0.0243258	0.0219139	0.107015	0.106588
chr16	57374219	57374317	6466006	0	+	0.632653	(0.58,1]	chr16	641365	12	INTRON	INTRON	CX3CL1	ENSG00000006210.7	ENST00000563383.1:ENST00000006053.7:ENST00000564948.1	protein_coding	protein_coding	protein_coding	protein_coding	5	77	2	1.9335	2.182325	2.43115	0.0870471	0.0309513	0.182758	0.127822
chr7	105012389	105012486	3665157	0	-	0.597938	(0.58,1]	chr7	353618	8	EXON_LNCRNA	EXON_LNCRNA:SS5_PROX:INTRON	LINC01004	ENSG00000228393.5	ENST00000450686.1:ENST00000655204.2:ENST00000445184.1:ENST00000689371.1:ENST00000690819.1:ENST00000688692.1:ENST00000693045.1:ENST00000684783.1:ENST00000685115.1:ENST00000688127.1:ENST00000693130.1:ENST00000687259.1:ENST00000689586.1:ENST00000687408.1:ENST00000688097.1:ENST00000687900.1:ENST00000684829.1	lncRNA	lncRNA	lncRNA	lncRNA	6	69	2	1.6588	2.1813000000000002	2.7038	0.0677297	0.0648563	0.193274	0.162218
chr3	188240961	188241061	1652668	0	+	0.32	(0.29,0.33]	chr3	173754	4	INTRON	INTRON	LPP	ENSG00000145012.14	ENST00000448637.5:ENST00000416784.5:ENST00000430340.5:ENST00000414139.5:ENST00000454789.5:ENST00000617246.5:ENST00000426274.5:ENST00000420410.5:ENST00000443217.5:ENST00000618621.4:ENST00000640853.1:ENST00000457242.1	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	1.88028	2.18065	2.48102	0.100436	0.0709831	0.19755	0.196131
chr11	65423172	65423272	4871573	0	+	0.61	(0.58,1]	chr11	468177	5	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000612303.2:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1	lncRNA	lncRNA	lncRNA	lncRNA	434	6274	2	1.91021	2.17941	2.44861	0.0119415	0.011252	0.0751418	0.0720977
chr17	81997146	81997246	6815268	0	+	0.64	(0.58,1]	chr17	688639	3	SS5_PROX	SS5_PROX:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	199	2	1.9345	2.17883	2.42316	0.0310899	0.0208276	0.119858	0.102744
chr17	72543057	72543157	6963741	0	-	0.52	(0.485,0.523]	chr17	710389	86	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1:ENST00000649332.1	lncRNA	lncRNA	lncRNA	lncRNA	7	88	2	1.64839	2.17543	2.70247	0.0759932	0.0680024	0.193274	0.174411
chr6	169671555	169671655	3304604	0	-	0.51	(0.485,0.523]	chr6	319945	7	EXON_MRNA	EXON_MRNA:INTRON	WDR27	ENSG00000184465.16	ENST00000448612.6:ENST00000648472.1:ENST00000423258.5:ENST00000647790.1:ENST00000647873.1:ENST00000649303.1:ENST00000647889.1:ENST00000648017.1:ENST00000650296.1:ENST00000546953.1:ENST00000649806.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	150	2	1.6755	2.175315	2.67513	0.0644498	0.0315316	0.185128	0.120781
chr21	44861627	44861727	7678452	0	-	0.64	(0.58,1]	chr21	802760	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000397886.3:ENST00000474737.5:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	15	276	2	1.74113	2.17498	2.60883	0.050343	0.0134466	0.162463	0.0792526
chr7	101138202	101138297	3431754	0	+	0.357895	(0.33,0.36]	chr7	332344	9	UTR3	UTR3:EXON_MRNA	SERPINE1	ENSG00000106366.9	ENST00000223095.5	protein_coding	protein_coding	protein_coding	protein_coding	23	428	2	2.01475	2.1742999999999997	2.33385	0.0504749	0.0135204	0.148301	0.0810532
chr8	23064167	23064266	3954959	0	-	0.565657	(0.523,0.58]	chr8	377513	144	INTRON	INTRON	TNFRSF10B	ENSG00000120889.13	ENST00000276431.9:ENST00000347739.3:ENST00000523504.5:ENST00000519028.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	5	85	2	2.15636	2.173845	2.1913299999999998	0.094263	0.0378186	0.188571	0.140551
chr12	120977819	120977918	5524698	0	-	0.383838	(0.36,0.39]	chr12	544219	5	INTRON	INTRON	HNF1A-AS1	ENSG00000241388.5	ENST00000619441.1:ENST00000647473.1:ENST00000646404.1:ENST00000537361.1:ENST00000433033.3:ENST00000535301.2	lncRNA	lncRNA	lncRNA	lncRNA	12	213	2	1.75947	2.1730650000000002	2.58666	0.0507117	0.0348303	0.163618	0.126695
chr16	52539746	52539846	6589787	0	-	0.49	(0.485,0.523]	chr16	658709	198	INTRON	INTRON	TOX3	ENSG00000103460.17	ENST00000219746.14:ENST00000407228.7:ENST00000563091.1:ENST00000568436.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	277	2	1.98208	2.172595	2.36311	0.0622873	0.00963536	0.160124	0.0656958
chr19	575299	575386	7184147	0	+	0.586207	(0.58,1]	chr19	730453	2	UTR5	UTR5:EXON_MRNA:SS5_PROX:INTRON	BSG	ENSG00000172270.22	ENST00000545507.6:ENST00000346916.9:ENST00000680065.1:ENST00000679472.1:ENST00000680552.1:ENST00000613627.5:ENST00000576925.4:ENST00000573216.5:ENST00000572899.6:ENST00000333511.9:ENST00000353555.9:ENST00000590218.4:ENST00000680326.1:ENST00000618006.4:ENST00000614867.2:ENST00000618112.4:ENST00000573784.6:ENST00000574970.2:ENST00000576984.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	4	65	2	1.96218	2.172565	2.38295	0.0832369	0.0730701	0.199669	0.180677
chr14	21259534	21259632	5931556	0	-	0.428571	(0.419,0.45]	chr14	581123	46	INTRON	INTRON	HNRNPC	ENSG00000092199.19	ENST00000336053.10:ENST00000553300.6:ENST00000554969.5:ENST00000556142.5:ENST00000554455.5:ENST00000430246.6:ENST00000553753.5:ENST00000555309.5:ENST00000555914.5:ENST00000557442.5:ENST00000556628.5:ENST00000556513.5:ENST00000555883.5:ENST00000557201.5:ENST00000556897.5:ENST00000420743.6:ENST00000554539.5:ENST00000554383.5:ENST00000555215.5:ENST00000555137.5:ENST00000554891.5:ENST00000556226.5:ENST00000555176.5:ENST00000553614.5:ENST00000557336.1:ENST00000557768.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	208	2	1.70869	2.172545	2.6364	0.0521021	0.0409334	0.167062	0.136191
chr10	48040934	48041033	4680775	0	-	0.50505	(0.485,0.523]	chr10	446508	15	INTRON	INTRON	ENSG00000289444	ENSG00000289444.1	ENST00000687180.1	lncRNA	lncRNA	lncRNA	lncRNA	7	109	2	1.75525	2.169005	2.58276	0.0616116	0.0500643	0.18013	0.147892
chr10	96145640	96145740	4560244	0	+	0.32	(0.29,0.33]	chr10	435112	100	INTRON	INTRON	ZNF518A	ENSG00000177853.15	ENST00000614149.2:ENST00000488700.5:ENST00000624776.4:ENST00000539666.5:ENST00000563195.1:ENST00000316045.10	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	6	80	2	1.76575	2.168735	2.57172	0.0888658	0.0609838	0.183874	0.180114
chr17	55304548	55304648	6757509	0	+	0.51	(0.485,0.523]	chr17	681718	152	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	6	80	2	1.75525	2.16757	2.57989	0.0899526	0.0616116	0.185791	0.18013
chr21	46190805	46190904	7680145	0	-	0.616162	(0.58,1]	chr21	803045	21	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	LSS	ENSG00000160285.15	ENST00000356396.8:ENST00000397728.8:ENST00000491729.1:ENST00000419093.5:ENST00000457828.6:ENST00000474319.1:ENST00000522411.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	148	2	1.48477	2.16735	2.84993	0.100619	0.0297842	0.196131	0.126591
chr20	34712949	34713047	7462691	0	+	0.581633	(0.58,1]	chr20	776897	28	UTR3	UTR3:EXON_MRNA	TP53INP2	ENSG00000078804.13	ENST00000374809.6:ENST00000374810.8	protein_coding	protein_coding	protein_coding	protein_coding	5	76	2	1.85952	2.167115	2.47471	0.0671431	0.0491463	0.192171	0.146142
chr12	56596959	56597057	5437622	0	-	0.581633	(0.58,1]	chr12	534676	15	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	7	102	2	2.13564	2.1665650000000003	2.19749	0.0567957	0.0287631	0.154343	0.123764
chr6	158628590	158628690	3064593	0	+	0.67	(0.58,1]	chr6	297763	1	SS5_PROX	SS5_PROX:INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	7	102	2	2.13564	2.1665650000000003	2.19749	0.0567957	0.0287631	0.154343	0.123764
chr2	231044294	231044393	1047567	0	+	0.353535	(0.33,0.36]	chr2	114051	25	INTRON	INTRON	C2orf72	ENSG00000204128.6	ENST00000373640.5:ENST00000477463.1:ENST00000463834.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	100	2	2.1459	2.166135	2.18637	0.0724785	0.0641796	0.184676	0.168716
chr11	65426867	65426966	4871610	0	+	0.383838	(0.36,0.39]	chr11	468177	42	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	98	1840	2	1.61782	2.16495	2.71208	0.0404629	0.01434	0.145887	0.0821732
chr7	4764459	4764558	3310173	0	+	0.59596	(0.58,1]	chr7	320850	21	UTR3	UTR3:EXON_MRNA	FOXK1	ENSG00000164916.11	ENST00000328914.5	protein_coding	protein_coding	protein_coding	protein_coding	4	62	2	2.11464	2.164615	2.21459	0.0873232	0.0487458	0.183238	0.160725
chrX	133896758	133896858	8115135	0	-	0.47	(0.45,0.485]	chrX	845529	618	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	149	2	2.00901	2.16337	2.31773	0.0927804	0.0163436	0.188571	0.0909429
chr3	172133946	172134046	1628412	0	+	0.53	(0.523,0.58]	chr3	170554	4	SS5_PROX	SS5_PROX:INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	12	188	2	1.96328	2.16322	2.36316	0.0439809	0.0289979	0.140024	0.124297
chr2	42241810	42241910	773766	0	+	0.4	(0.39,0.419]	chr2	88928	334	INTRON	INTRON	EML4	ENSG00000143924.19	ENST00000318522.10:ENST00000402711.6:ENST00000409040.1:ENST00000482660.1:ENST00000401738.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	8	156	2	2.09129	2.1625550000000002	2.23382	0.0608536	0.0401905	0.158506	0.14493
chr6	157310885	157310985	3298400	0	-	0.54	(0.523,0.58]	chr6	319197	175	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	45	694	2	1.88311	2.16253	2.44195	0.0223131	0.0206712	0.102713	0.102264
chr17	55324403	55324501	6757714	0	+	0.306122	(0.29,0.33]	chr17	681735	37	UTR3	UTR3:EXON_MRNA	HLF	ENSG00000108924.14	ENST00000226067.10	protein_coding	protein_coding	protein_coding	protein_coding	14	231	2	1.84372	2.158875	2.47403	0.0716547	0.0108011	0.168159	0.0705097
chr11	65428265	65428364	4871624	0	+	0.494949	(0.485,0.523]	chr11	468177	56	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	62	1121	2	1.60895	2.15843	2.70791	0.0389498	0.0120819	0.142578	0.0745767
chr2	54614517	54614616	799863	0	+	0.59596	(0.58,1]	chr2	90814	18	INTRON	INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000389980.7:ENST00000333896.5	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.85952	2.158275	2.45703	0.0933945	0.0671431	0.192171	0.188571
chr7	79454241	79454340	3402820	0	+	0.676768	(0.58,1]	chr7	328676	4	EXON_MRNA	EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	MAGI2-AS3	ENSG00000234456.10	ENST00000616796.4:ENST00000429408.6:ENST00000683943.1:ENST00000426835.6:ENST00000446159.6:ENST00000663669.1:ENST00000661940.1:ENST00000616192.5:ENST00000657546.1:ENST00000655337.2:ENST00000668746.1:ENST00000629211.2:ENST00000613892.4:ENST00000612949.5:ENST00000619135.4:ENST00000655795.1:ENST00000669576.1:ENST00000435749.6:ENST00000414797.6:ENST00000667893.1:ENST00000451809.6:ENST00000664666.2:ENST00000667729.1:ENST00000654732.1:ENST00000611793.2:ENST00000612203.5:ENST00000663422.1:ENST00000683157.1:ENST00000448195.6:ENST00000660878.1:ENST00000667887.1:ENST00000424477.5:ENST00000422093.6:ENST00000618603.2:ENST00000653779.1:ENST00000617955.5:ENST00000666657.1:ENST00000614953.5	lncRNA	retained_intron	lncRNA	retained_intron:lncRNA	5	74	2	1.96011	2.15701	2.35391	0.0600041	0.0549599	0.168901	0.158506
chr16	541918	542014	6367937	0	+	0.625	(0.58,1]	chr16	627881	12	INTRON	INTRON	CAPN15	ENSG00000103326.12	ENST00000219611.7:ENST00000562370.5:ENST00000568988.5:ENST00000637507.1	protein_coding	protein_coding	protein_coding	protein_coding	4	53	2	1.91069	2.15643	2.40217	0.100879	0.0607034	0.196131	0.179468
chr11	65423072	65423172	4871572	0	+	0.65	(0.58,1]	chr11	468177	4	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000612303.2:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1	lncRNA	lncRNA	lncRNA	lncRNA	438	6333	2	1.77933	2.156195	2.53306	0.0171473	0.00939053	0.0923809	0.0653252
chr17	77298187	77298286	6803332	0	+	0.424242	(0.419,0.45]	chr17	686716	29	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000589070.1:ENST00000591833.5:ENST00000591198.5:ENST00000427177.6:ENST00000590576.5:ENST00000431235.6:ENST00000449803.6:ENST00000587237.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	5	97	2	1.9738	2.155375	2.33695	0.0825989	0.0645318	0.185295	0.179401
chr11	65433856	65433956	4871680	0	+	0.49	(0.485,0.523]	chr11	468177	112	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	57	1000	2	2.00207	2.15522	2.30837	0.0250158	0.0158334	0.10758	0.088736
chr3	172135844	172135944	1628431	0	+	0.38	(0.36,0.39]	chr3	170555	19	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	117	2	1.94146	2.15499	2.36852	0.0758649	0.0461733	0.174265	0.155334
chr11	2698494	2698594	4972296	0	-	0.55	(0.523,0.58]	chr11	481197	903	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	20	302	2	1.75175	2.1549	2.55805	0.0357735	0.025313	0.138933	0.108371
chr17	38920772	38920872	6730089	0	+	0.54	(0.523,0.58]	chr17	676475	21	UTR3	UTR3:EXON_MRNA	LASP1	ENSG00000002834.18	ENST00000433206.6:ENST00000318008.11:ENST00000435347.7	protein_coding	protein_coding	protein_coding	protein_coding	4	73	2	2.09041	2.153555	2.2167	0.0865899	0.0674148	0.192827	0.182221
chr1	17589178	17589277	54071	0	+	0.484848	(0.45,0.485]	chr1	5465	3	INTRON	INTRON	ARHGEF10L	ENSG00000074964.17	ENST00000361221.8:ENST00000375415.5	protein_coding	protein_coding	protein_coding	protein_coding	6	110	2	2.09504	2.14717	2.1993	0.0703989	0.0477581	0.168159	0.1588
chr8	108206776	108206875	4038766	0	-	0.323232	(0.29,0.33]	chr8	385490	29	INTRON	INTRON	EIF3E	ENSG00000104408.11	ENST00000678042.1:ENST00000678773.1:ENST00000677409.1:ENST00000676892.1:ENST00000523674.2:ENST00000677674.1:ENST00000220849.10:ENST00000678937.1:ENST00000677084.1:ENST00000676706.1:ENST00000518100.6:ENST00000677040.1:ENST00000676698.1:ENST00000522352.6:ENST00000521297.2:ENST00000677501.1:ENST00000519030.6:ENST00000519627.2:ENST00000518345.2:ENST00000522445.6:ENST00000678334.1:ENST00000678023.1:ENST00000678797.1:ENST00000677614.1:ENST00000676642.1:ENST00000677965.1:ENST00000678901.1:ENST00000678243.1:ENST00000676663.1:ENST00000679198.1:ENST00000677524.1:ENST00000521614.6:ENST00000678004.1:ENST00000678881.1:ENST00000677590.1:ENST00000677272.1:ENST00000677317.1:ENST00000676530.1:ENST00000677696.1:ENST00000519517.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	83	2	2.13318	2.146535	2.15989	0.0950353	0.0411878	0.189021	0.147933
chr17	77468756	77468856	6805066	0	+	0.52	(0.485,0.523]	chr17	686810	18	INTRON	INTRON	SEPTIN9	ENSG00000184640.20	ENST00000591198.5:ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000588575.1:ENST00000590294.6:ENST00000588690.6:ENST00000423034.6:ENST00000590059.5:ENST00000427674.6:ENST00000592420.1:ENST00000585930.5:ENST00000591020.5:ENST00000586521.5:ENST00000588958.6:ENST00000586128.5:ENST00000541152.6:ENST00000589250.6:ENST00000591704.5:ENST00000591088.5:ENST00000592481.6:ENST00000590938.5:ENST00000592951.5:ENST00000586433.5:ENST00000585929.5:ENST00000590917.5:ENST00000591472.6:ENST00000593189.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	96	2	1.93244	2.146075	2.35971	0.0702693	0.0506865	0.168159	0.16354
chr5	168549591	168549690	2808525	0	-	0.313131	(0.29,0.33]	chr5	275053	12	UTR3	UTR3:EXON_MRNA	PANK3	ENSG00000120137.7	ENST00000239231.7	protein_coding	protein_coding	protein_coding	protein_coding	10	152	2	1.73324	2.145565	2.55789	0.0530587	0.0368456	0.167062	0.129207
chr6	157311185	157311285	3298403	0	-	0.58	(0.523,0.58]	chr6	319197	178	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	28	431	2	2.13128	2.14534	2.1594	0.0411626	0.0128792	0.136301	0.0778105
chr14	39268516	39268614	5792186	0	+	0.489796	(0.485,0.523]	chr14	567494	6	INTRON	INTRON	MIA2	ENSG00000150527.18	ENST00000553728.1:ENST00000640607.2:ENST00000554392.5:ENST00000555716.5:ENST00000341749.7:ENST00000557038.5:ENST00000396165.8:ENST00000556990.1:ENST00000396158.6:ENST00000280083.7:ENST00000341502.9:ENST00000556148.5:ENST00000348007.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	15	240	2	2.14169	2.143355	2.14502	0.0509691	0.017922	0.148503	0.0949327
chr6	157312684	157312784	3298418	0	-	0.57	(0.523,0.58]	chr6	319197	193	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	14	218	2	2.08748	2.142945	2.19841	0.0510034	0.0201668	0.148503	0.101636
chr16	81517988	81518088	6508473	0	+	0.58	(0.523,0.58]	chr16	645911	221	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	5	88	2	1.93897	2.142805	2.34664	0.0994044	0.0413259	0.194647	0.148318
chrX	74240143	74240242	8068664	0	-	0.50505	(0.485,0.523]	chrX	841740	72	INTRON	INTRON	FTX	ENSG00000230590.12	ENST00000603672.5:ENST00000430772.6:ENST00000602776.6:ENST00000638681.1:ENST00000652319.1:ENST00000661133.1:ENST00000652071.1:ENST00000602812.6:ENST00000651703.1:ENST00000653018.1:ENST00000658448.1:ENST00000662240.1:ENST00000652527.1:ENST00000651451.1:ENST00000657611.1:ENST00000660481.1:ENST00000659574.1:ENST00000661084.1:ENST00000662494.1:ENST00000670936.1:ENST00000602420.6:ENST00000658203.1:ENST00000638985.1:ENST00000691187.1:ENST00000603037.2:ENST00000641360.1:ENST00000687056.1:ENST00000654870.2:ENST00000652540.1:ENST00000652331.2:ENST00000652013.1:ENST00000669263.1:ENST00000657070.1:ENST00000665069.1:ENST00000651936.1:ENST00000652496.1:ENST00000653874.2:ENST00000661335.1:ENST00000664123.1:ENST00000658439.1:ENST00000666535.1:ENST00000652970.1:ENST00000423992.3:ENST00000665313.2:ENST00000651140.1:ENST00000660100.1:ENST00000693483.1	lncRNA	lncRNA	lncRNA	lncRNA	6	96	2	1.89906	2.142665	2.38627	0.067556	0.0542037	0.167824	0.163788
chr1	52919108	52919207	485626	0	-	0.494949	(0.485,0.523]	chr1	57740	11	INTRON	INTRON	ECHDC2	ENSG00000121310.17	ENST00000536120.5:ENST00000371522.9:ENST00000460612.5:ENST00000371520.5:ENST00000358358.9:ENST00000476477.6:ENST00000467988.2:ENST00000488268.5:ENST00000544365.5:ENST00000495920.5:ENST00000544531.5:ENST00000480312.6:ENST00000542552.1:ENST00000474789.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	155	2	2.02754	2.14185	2.25616	0.0668049	0.0253936	0.16272	0.115502
chr3	30612566	30612666	1433151	0	+	0.46	(0.45,0.485]	chr3	152992	52	INTRON	INTRON	TGFBR2	ENSG00000163513.19	ENST00000295754.10:ENST00000359013.4	protein_coding	protein_coding	protein_coding	protein_coding	12	194	2	1.97143	2.14022	2.30901	0.0841474	0.0135504	0.181766	0.0811697
chr6	2267723	2267821	2824601	0	+	0.5	(0.485,0.523]	chr6	277256	15	INTRON	INTRON	GMDS-DT	ENSG00000250903.10	ENST00000657072.1:ENST00000529893.6:ENST00000659523.1:ENST00000659643.1:ENST00000660978.1:ENST00000691004.1:ENST00000664738.1:ENST00000532124.6:ENST00000691547.1:ENST00000663428.1:ENST00000654526.1:ENST00000670895.1:ENST00000532564.8:ENST00000685772.1:ENST00000687264.1:ENST00000660533.1:ENST00000531092.6:ENST00000524770.6:ENST00000657589.1:ENST00000607519.2:ENST00000456943.6:ENST00000525811.5:ENST00000534441.5:ENST00000533653.5:ENST00000534468.1:ENST00000530346.6:ENST00000662000.1:ENST00000665610.1:ENST00000654970.1	lncRNA	lncRNA	lncRNA	lncRNA	9	140	2	2.13203	2.1394	2.14677	0.0733061	0.0241142	0.17026	0.1126
chrX	133788443	133788543	8114051	0	-	0.48	(0.45,0.485]	chrX	845523	339	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	111	2	2.10977	2.13922	2.16867	0.103365	0.0266057	0.197541	0.118113
chr16	81546081	81546181	6508754	0	+	0.5	(0.485,0.523]	chr16	645911	502	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8:ENST00000539778.6	protein_coding	protein_coding	protein_coding	protein_coding	6	96	2	1.8649	2.13862	2.41234	0.0649766	0.0580088	0.175217	0.162385
chr6	158566126	158566226	3063956	0	+	0.58	(0.523,0.58]	chr6	297687	55	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	11	190	2	1.91185	2.138115	2.36438	0.0390996	0.0387828	0.142619	0.131324
chr11	2671804	2671904	4972029	0	-	0.61	(0.58,1]	chr11	481197	636	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	7	91	2	2.04847	2.135275	2.22208	0.074035	0.0288559	0.171168	0.123941
chr2	65431061	65431161	1172166	0	-	0.77	(0.58,1]	chr2	127582	505	INTRON	INTRON	SPRED2	ENSG00000198369.10	ENST00000356388.9:ENST00000440972.1	protein_coding	protein_coding	protein_coding	protein_coding	6	91	2	1.94278	2.134855	2.32693	0.0720372	0.038688	0.168159	0.142489
chr1	161223425	161223501	607261	0	-	0.605263	(0.58,1]	chr1	72278	1	UTR5	UTR5:EXON_MRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	APOA2	ENSG00000158874.11	ENST00000463812.1:ENST00000468465.5:ENST00000367990.7:ENST00000481413.1:ENST00000470459.6:ENST00000464492.5:ENST00000463273.5:ENST00000469730.2	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	17	224	2	1.48679	2.134515	2.78224	0.0604185	0.0132389	0.178708	0.0787251
chr6	158627420	158627518	3064581	0	+	0.489796	(0.485,0.523]	chr6	297758	13	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	9	149	2	2.12634	2.13342	2.1405	0.0626733	0.0281062	0.160501	0.121818
chr11	9289830	9289928	4990951	0	-	0.336735	(0.33,0.36]	chr11	483068	9	INTRON	INTRON	TMEM41B	ENSG00000166471.11	ENST00000524543.5:ENST00000528080.6:ENST00000299596.8:ENST00000611268.4:ENST00000527813.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	90	2	1.89048	2.1334049999999998	2.37633	0.0722368	0.0718315	0.199502	0.168159
chr19	1416064	1416160	7187509	0	+	0.635417	(0.58,1]	chr19	731289	2	EXON_MRNA	EXON_MRNA:SS5_PROX:INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5:ENST00000587833.5:ENST00000589484.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	87	2	1.96218	2.1332050000000002	2.30423	0.0832369	0.0260615	0.180677	0.116811
chr3	172082994	172083093	1627897	0	+	0.353535	(0.33,0.36]	chr3	170535	357	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	132	2	1.84013	2.133175	2.42622	0.0668081	0.0447777	0.16272	0.154539
chr1	20775182	20775271	414132	0	-	0.494382	(0.485,0.523]	chr1	48420	3	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000419948.5:ENST00000424732.5:ENST00000417710.5	protein_coding	protein_coding	protein_coding	protein_coding	7	121	2	1.8649	2.13232	2.39974	0.0580088	0.0495534	0.175217	0.146574
chr22	38731201	38731300	7725131	0	+	0.626263	(0.58,1]	chr22	809289	6	UTR3	UTR3:EXON_MRNA:SS5_PROX:INTRON	GTPBP1	ENSG00000100226.16	ENST00000216044.10:ENST00000458073.5:ENST00000462332.1:ENST00000484971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	4	52	2	1.85952	2.130845	2.40217	0.100879	0.0671431	0.196131	0.192171
chr22	15823691	15823790	7682962	0	+	0.474747	(0.45,0.485]	chr22	803569	6	EXON_LNCRNA	EXON_LNCRNA:INTRON	DUXAP8:ENSG00000272872	ENSG00000206195.11:ENSG00000272872.1	ENST00000413768.5:ENST00000437781.5:ENST00000447898.5:ENST00000608286.1	lncRNA	lncRNA	lncRNA	lncRNA	4	74	2	2.08776	2.1289350000000002	2.17011	0.0952161	0.0696113	0.194713	0.189038
chr8	22375030	22375129	3770098	0	+	0.626263	(0.58,1]	chr8	362721	69	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	6	81	2	1.99714	2.12666	2.25618	0.0701734	0.0393327	0.168023	0.143336
chr19	56834938	56835034	7410669	0	-	0.479167	(0.45,0.485]	chr19	771664	8	INTRON	INTRON	ZIM2:PEG3	ENSG00000269699.7:ENSG00000198300.14	ENST00000593711.6:ENST00000689654.1:ENST00000629319.3:ENST00000599935.5:ENST00000595671.5:ENST00000597281.5:ENST00000601070.5:ENST00000693159.1:ENST00000650111.1:ENST00000648694.1:ENST00000326441.15:ENST00000649233.1:ENST00000649680.1:ENST00000649876.1:ENST00000649428.1:ENST00000650632.1:ENST00000650102.1:ENST00000649735.1:ENST00000647621.1:ENST00000598410.5:ENST00000593695.5:ENST00000599577.5:ENST00000594389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	16	293	2	2.05329	2.126255	2.19922	0.042047	0.0270764	0.13735	0.119337
chr17	82007538	82007638	6815372	0	+	0.69	(0.58,1]	chr17	688641	33	EXON_MRNA	EXON_MRNA:INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6:ENST00000577733.5:ENST00000578236.5:ENST00000581608.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	9	122	2	1.87437	2.125945	2.37752	0.0953385	0.0107572	0.189038	0.0703053
chrX	109686142	109686241	8090992	0	-	0.333333	(0.33,0.36]	chrX	843698	3	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000505855.1:ENST00000508092.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	159	2	1.76078	2.1249000000000002	2.48902	0.0527304	0.045664	0.167062	0.142336
chr16	81482572	81482671	6508117	0	+	0.626263	(0.58,1]	chr16	645906	367	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	5	72	2	1.96011	2.124805	2.2895	0.0665599	0.0549599	0.168901	0.162495
chr7	73602691	73602790	3602884	0	-	0.626263	(0.58,1]	chr7	347634	26	INTRON	INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000476404.5:ENST00000453275.1:ENST00000488212.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	12	165	2	2.08671	2.12397	2.16123	0.0435117	0.0200421	0.139196	0.10105
chr2	200360354	200360454	986496	0	+	0.52	(0.485,0.523]	chr2	108296	87	INTRON	INTRON	SPATS2L	ENSG00000196141.14	ENST00000439084.5:ENST00000409718.5:ENST00000358677.9:ENST00000409988.7:ENST00000409385.5:ENST00000439395.5:ENST00000444012.5:ENST00000451764.6:ENST00000360760.9:ENST00000423749.5:ENST00000457757.5:ENST00000471601.5:ENST00000428692.5:ENST00000453663.5:ENST00000409140.8:ENST00000459656.5:ENST00000471533.5:ENST00000409397.6:ENST00000619961.4:ENST00000409151.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	6	78	2	1.75525	2.1236099999999998	2.49197	0.10114	0.0616116	0.196131	0.18013
chrX	133868164	133868264	8114849	0	-	0.54	(0.523,0.58]	chrX	845529	332	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	9	138	2	1.97925	2.12294	2.26663	0.061194900000000003	0.0337245	0.158506	0.133139
chr17	55324012	55324110	6757710	0	+	0.459184	(0.45,0.485]	chr17	681735	33	UTR3	UTR3:EXON_MRNA	HLF	ENSG00000108924.14	ENST00000226067.10	protein_coding	protein_coding	protein_coding	protein_coding	12	212	2	2.01262	2.12284	2.23306	0.0621022	0.0230145	0.159653	0.109585
chr1	89908619	89908719	181577	0	+	0.33	(0.29,0.33]	chr1	19585	616	INTRON	INTRON	LRRC8D	ENSG00000171492.14	ENST00000525774.5:ENST00000337338.9:ENST00000394593.7:ENST00000532201.5:ENST00000414841.1:ENST00000527156.1:ENST00000441269.2	protein_coding	protein_coding	protein_coding	protein_coding	9	103	2	1.6733	2.12251	2.57172	0.0888658	0.0559189	0.183874	0.171466
chr16	20685175	20685275	6416310	0	+	0.59	(0.58,1]	chr16	634386	31	INTRON	INTRON	ACSM3	ENSG00000005187.12	ENST00000568235.5:ENST00000501740.6:ENST00000561584.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	17	183	2	1.74348	2.1222149999999997	2.50095	0.0334226	0.0311702	0.127822	0.12421
chr3	32892796	32892895	1439622	0	+	0.525253	(0.523,0.58]	chr3	153418	11	UTR3	UTR3:EXON_MRNA	TRIM71	ENSG00000206557.6	ENST00000383763.6	protein_coding	protein_coding	protein_coding	protein_coding	6	95	2	1.80674	2.121165	2.43559	0.0645707	0.0628646	0.185384	0.160778
chr11	65430362	65430461	4871645	0	+	0.393939	(0.39,0.419]	chr11	468177	77	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	120	2228	2	2.09033	2.1210449999999996	2.15176	0.0405745	0.0116718	0.135845	0.0738039
chr16	50619203	50619303	6452120	0	+	0.57	(0.523,0.58]	chr16	639912	32	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6	protein_coding	protein_coding	protein_coding	protein_coding	11	160	2	2.07652	2.12099	2.16546	0.0714042	0.0222624	0.168159	0.108193
chr11	65441146	65441246	4871753	0	+	0.48	(0.45,0.485]	chr11	468177	185	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	71	1196	2	2.0019	2.12074	2.23958	0.0300139	0.0156664	0.117308	0.0879059
chr11	2692896	2692996	4972240	0	-	0.5	(0.485,0.523]	chr11	481197	847	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	10	149	2	2.03147	2.12034	2.20921	0.0667015	0.0272803	0.16272	0.119337
chr20	48932503	48932603	7490260	0	+	0.46	(0.45,0.485]	chr20	780774	101	INTRON	INTRON	ARFGEF2	ENSG00000124198.10	ENST00000371917.5:ENST00000681399.1:ENST00000679436.1:ENST00000681885.1:ENST00000681021.1:ENST00000680871.1:ENST00000681656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	108	2	1.85077	2.119875	2.38898	0.0698506	0.0523187	0.167349	0.167062
chr4	106198752	106198852	2302246	0	-	0.37	(0.36,0.39]	chr4	231472	36	INTRON	INTRON	TBCK	ENSG00000145348.17	ENST00000273980.10:ENST00000394708.7:ENST00000510927.5:ENST00000361687.8:ENST00000394706.7:ENST00000467183.6:ENST00000514689.5:ENST00000515705.5:ENST00000511011.5:ENST00000506615.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	5	90	2	2.08077	2.11923	2.15769	0.101186	0.051786	0.196131	0.166649
chr2	215392186	215392279	1368212	0	-	0.419355	(0.419,0.45]	chr2	145678	5	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	FN1	ENSG00000115414.21	ENST00000421182.5:ENST00000323926.10:ENST00000336916.8:ENST00000357867.8:ENST00000359671.5:ENST00000443816.5:ENST00000446046.5:ENST00000492816.6:ENST00000354785.11:ENST00000432072.6:ENST00000356005.8:ENST00000456923.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	180	2	2.11335	2.118875	2.1244	0.0756751	0.0286554	0.173864	0.123599
chr2	11589723	11589821	720780	0	+	0.602041	(0.58,1]	chr2	84163	4	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000381483.6:ENST00000234142.9:ENST00000432985.1	protein_coding	protein_coding	protein_coding	protein_coding	6	86	2	1.9335	2.118865	2.30423	0.0870471	0.0260615	0.182758	0.116811
chr11	65427965	65428065	4871621	0	+	0.57	(0.523,0.58]	chr11	468177	53	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	77	1328	2	2.0719	2.1180399999999997	2.16418	0.0310518	0.0125007	0.119758	0.0765738
chr16	87361949	87362047	6654794	0	-	0.520408	(0.485,0.523]	chr16	665713	12	INTRON	INTRON	FBXO31	ENSG00000103264.18	ENST00000311635.12:ENST00000565593.1:ENST00000618298.6:ENST00000636077.1:ENST00000561664.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	8	114	2	1.87575	2.11773	2.35971	0.0702693	0.0426372	0.168159	0.149802
chr17	58089974	58090074	6764164	0	+	0.42	(0.419,0.45]	chr17	682242	8	UTR3	UTR3:EXON_MRNA	DYNLL2	ENSG00000264364.3	ENST00000579991.3	protein_coding	protein_coding	protein_coding	protein_coding	15	256	2	2.05939	2.116345	2.1733	0.0626452	0.024596	0.160434	0.114148
chrX	109687925	109688024	8091010	0	-	0.414141	(0.39,0.419]	chrX	843698	21	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000505855.1:ENST00000508092.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	180	2	1.95045	2.116015	2.28158	0.0832581	0.0224774	0.180719	0.108193
chr2	152443474	152443574	926546	0	+	0.49	(0.485,0.523]	chr2	103058	1074	INTRON	INTRON	FMNL2	ENSG00000157827.20	ENST00000288670.14	protein_coding	protein_coding	protein_coding	protein_coding	6	77	2	1.69349	2.115045	2.5366	0.0953348	0.0695369	0.194631	0.189038
chr22	15820246	15820344	7682927	0	+	0.714286	(0.58,1]	chr22	803568	12	INTRON	INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000447898.5	lncRNA	lncRNA	lncRNA	lncRNA	5	59	2	1.71727	2.11357	2.50987	0.0865901	0.0706167	0.196546	0.182221
chr1	20775449	20775517	414135	0	-	0.176471	[0,0.29]	chr1	48421	1	EXON_LNCRNA	EXON_LNCRNA:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000419948.5:ENST00000424732.5:ENST00000417710.5:ENST00000487117.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	4	63	2	2.08232	2.113105	2.14389	0.093345	0.0595238	0.188571	0.176818
chr19	18443756	18443855	7347618	0	-	0.656566	(0.58,1]	chr19	761434	12	UTR3	UTR3:EXON_MRNA	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	89	2	1.89825	2.11259	2.32693	0.0774569	0.038688	0.175203	0.142489
chr1	8025158	8025258	391026	0	-	0.31	(0.29,0.33]	chr1	44903	91	INTRON	INTRON	ERRFI1	ENSG00000116285.13	ENST00000474874.5:ENST00000377482.10:ENST00000469499.5:ENST00000487559.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	94	2	1.77482	2.11231	2.4498	0.0697387	0.0595935	0.195059	0.157889
chr19	1413555	1413655	7187482	0	+	0.47	(0.45,0.485]	chr19	731286	31	INTRON	INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	153	2	1.86981	2.10973	2.34965	0.0560694	0.04058	0.154188	0.146165
chr11	65436553	65436652	4871707	0	+	0.494949	(0.485,0.523]	chr11	468177	139	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	42	764	2	1.3908	2.10812	2.82544	0.0675735	0.0105226	0.193219	0.0692658
chr11	65428864	65428964	4871630	0	+	0.3	(0.29,0.33]	chr11	468177	62	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	70	1117	2	2.04988	2.10748	2.16508	0.0302208	0.0134851	0.118034	0.0808585
chr20	34289931	34290031	7546798	0	-	0.59	(0.58,1]	chr20	787799	2	SS5_PROX	SS5_PROX:INTRON	AHCY	ENSG00000101444.13	ENST00000217426.7:ENST00000538132.1:ENST00000480653.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	5	70	2	2.09894	2.10679	2.11464	0.0873232	0.0411332	0.183238	0.147756
chr2	240626847	240626944	1075212	0	+	0.649485	(0.58,1]	chr2	116658	9	INTRON	INTRON	GPR35	ENSG00000178623.13	ENST00000319838.10:ENST00000403859.1:ENST00000430267.2:ENST00000407714.2	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	1.99855	2.10657	2.21459	0.103709	0.0487458	0.197611	0.160725
chr7	47471311	47471411	3588521	0	-	0.64	(0.58,1]	chr7	346123	182	INTRON	INTRON	TNS3	ENSG00000136205.17	ENST00000311160.14:ENST00000457718.5:ENST00000450444.5:ENST00000442536.6:ENST00000458317.6:ENST00000415929.5:ENST00000434451.1	protein_coding	protein_coding	protein_coding	protein_coding	4	59	2	1.99855	2.10657	2.21459	0.103709	0.0487458	0.197611	0.160725
chr11	65436652	65436752	4871708	0	+	0.42	(0.419,0.45]	chr11	468177	140	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	57	1135	2	1.88986	2.10649	2.32312	0.0314774	0.0257053	0.120781	0.116333
chr20	31721057	31721154	7543015	0	-	0.525773	(0.523,0.58]	chr20	787270	18	INTRON	INTRON	BCL2L1	ENSG00000171552.14	ENST00000376055.9:ENST00000376062.6:ENST00000307677.5:ENST00000420488.6:ENST00000439267.2:ENST00000678563.1:ENST00000456404.6:ENST00000676942.1:ENST00000676582.1:ENST00000434194.2:ENST00000677194.1:ENST00000678671.1:ENST00000422920.2:ENST00000450273.2	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	15	194	2	1.81469	2.106005	2.39732	0.0498554	0.0330217	0.147452	0.132743
chr3	42646862	42646960	1452460	0	+	0.540816	(0.523,0.58]	chr3	155084	10	UTR3	UTR3:EXON_MRNA	NKTR	ENSG00000114857.19	ENST00000429888.5:ENST00000232978.13	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	203	2	1.94636	2.10313	2.2599	0.0461317	0.0301444	0.14307	0.126768
chr11	65432658	65432758	4871668	0	+	0.29	[0,0.29]	chr11	468177	100	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2:ENST00000687943.1	lncRNA	lncRNA	lncRNA	lncRNA	76	1198	2	1.99434	2.10119	2.20804	0.021315	0.0145529	0.0998893	0.0837282
chr11	65435554	65435654	4871697	0	+	0.59	(0.58,1]	chr11	468177	129	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	40	648	2	1.49403	2.099935	2.70584	0.0488966	0.0083655	0.160725	0.0614357
chr20	33009757	33009853	7457386	0	+	0.645833	(0.58,1]	chr20	776365	7	INTRON	INTRON	BPIFB2	ENSG00000078898.7	ENST00000170150.4	protein_coding	protein_coding	protein_coding	protein_coding	10	134	2	2.06867	2.0985899999999997	2.12851	0.0583808	0.0204098	0.155373	0.102668
chr2	21038995	21039091	1100846	0	-	0.354167	(0.33,0.36]	chr2	120062	5	INTRON	INTRON	APOB	ENSG00000084674.15	ENST00000233242.5:ENST00000673739.1:ENST00000673882.1:ENST00000399256.4	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	14	172	2	1.62497	2.095645	2.56632	0.0544717	0.0542441	0.167824	0.151772
chr11	65423372	65423471	4871575	0	+	0.707071	(0.58,1]	chr11	468177	7	EXON_LNCRNA	EXON_LNCRNA:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000612303.2:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1	lncRNA	lncRNA	lncRNA	lncRNA	181	2615	2	1.80689	2.09449	2.38209	0.0169012	0.0134012	0.0922785	0.0791707
chr20	63878751	63878850	7509644	0	+	0.606061	(0.58,1]	chr20	783600	25	INTRON	INTRON	TPD52L2	ENSG00000101150.18	ENST00000611972.4:ENST00000615907.4:ENST00000369927.8:ENST00000346249.9:ENST00000348257.9:ENST00000352482.8:ENST00000351424.8:ENST00000217121.9:ENST00000358548.4	protein_coding	protein_coding	protein_coding	protein_coding	6	79	2	2.03303	2.09219	2.15135	0.0825864	0.0363214	0.179396	0.139793
chrX	133923354	133923454	8115401	0	-	0.48	(0.45,0.485]	chrX	845529	884	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	23	310	2	1.8009	2.091195	2.38149	0.03972	0.0308807	0.133687	0.127822
chr11	65433157	65433257	4871673	0	+	0.38	(0.36,0.39]	chr11	468177	105	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	40	814	2	1.78227	2.0853349999999997	2.3884	0.0356746	0.0269044	0.138552	0.112113
chr20	62956962	62957062	7508265	0	+	0.7	(0.58,1]	chr20	783174	1	SS5_ADJ	SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5:ENST00000411611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	149	2	2.01732	2.08415	2.15098	0.0560658	0.0192992	0.154188	0.0994526
chr3	48413169	48413269	1766534	0	-	0.65	(0.58,1]	chr3	182194	1	EXON_MRNA	EXON_MRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000485535.5:ENST00000456774.5:ENST00000473996.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	10	135	2	1.69877	2.08221	2.46565	0.0949505	0.0101595	0.189021	0.0677833
chr11	65431959	65432059	4871661	0	+	0.34	(0.33,0.36]	chr11	468177	93	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2:ENST00000687943.1	lncRNA	lncRNA	lncRNA	lncRNA	34	650	2	1.96602	2.0815200000000003	2.19702	0.0346393	0.0258263	0.126432	0.116361
chr19	40232883	40232982	7379268	0	-	0.636364	(0.58,1]	chr19	765595	27	UTR3	UTR3:EXON_MRNA	AKT2	ENSG00000105221.18	ENST00000392038.7:ENST00000424901.5:ENST00000483166.5:ENST00000476266.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	117	2	1.74113	2.080845	2.42056	0.050343	0.0386125	0.162463	0.131324
chr16	29900573	29900672	6435240	0	+	0.666667	(0.58,1]	chr16	637091	3	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ASPHD1	ENSG00000174939.11	ENST00000563177.5:ENST00000483405.5:ENST00000308748.10	protein_coding	protein_coding	protein_coding	protein_coding	6	83	2	1.81271	2.077355	2.342	0.10463	0.023878	0.198437	0.111721
chr17	55304848	55304948	6757512	0	+	0.5	(0.485,0.523]	chr17	681718	155	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	113	2	1.96506	2.076875	2.18869	0.0688144	0.0474329	0.165663	0.157852
chr11	65438250	65438350	4871724	0	+	0.27	[0,0.29]	chr11	468177	156	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	29	405	2	1.71165	2.0758799999999997	2.44011	0.0341774	0.0182909	0.134475	0.0922544
chr6	157311085	157311185	3298402	0	-	0.55	(0.523,0.58]	chr6	319197	177	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	8	110	2	1.7668	2.0753500000000003	2.3839	0.0679164	0.0531659	0.167062	0.164413
chr14	19306042	19306137	5928423	0	-	0.547368	(0.523,0.58]	chr14	580404	17	INTRON	INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	8	122	2	2.03388	2.074745	2.11561	0.0867547	0.028498	0.182221	0.123012
chr11	65438350	65438450	4871725	0	+	0.24	[0,0.29]	chr11	468177	157	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	37	553	2	1.97035	2.07416	2.17797	0.0257699	0.0185602	0.109555	0.0971455
chrX	109686241	109686340	8090993	0	-	0.393939	(0.39,0.419]	chrX	843698	4	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000505855.1:ENST00000508092.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	5	88	2	1.96828	2.07296	2.17764	0.0990461	0.0640398	0.194048	0.184676
chr14	19095208	19095308	5754292	0	+	0.5	(0.485,0.523]	chr14	564239	14	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000619938.1:ENST00000644980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	12	185	2	2.04164	2.071865	2.10209	0.0653477	0.0231653	0.162385	0.109979
chr21	46144916	46145016	7679756	0	-	0.56	(0.523,0.58]	chr21	802963	1	SS5_PROX	SS5_PROX:INTRON	FTCD	ENSG00000160282.15	ENST00000291670.9:ENST00000397748.5:ENST00000498355.6:ENST00000397746.8:ENST00000397743.1:ENST00000488577.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	179	2	1.78068	2.07152	2.36236	0.0817313	0.0261999	0.17914	0.117385
chr16	87360866	87360964	6654783	0	-	0.663265	(0.58,1]	chr16	665713	1	INTRON	INTRON	FBXO31	ENSG00000103264.18	ENST00000311635.12:ENST00000565593.1:ENST00000618298.6:ENST00000636077.1:ENST00000561664.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	14	168	2	1.81341	2.06953	2.32565	0.0371725	0.0310808	0.130226	0.127822
chr19	18443656	18443756	7347617	0	-	0.67	(0.58,1]	chr19	761434	11	UTR3	UTR3:EXON_MRNA	ELL	ENSG00000105656.13	ENST00000262809.9:ENST00000594635.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	5	72	2	1.75577	2.06936	2.38295	0.0970527	0.0730701	0.199669	0.190588
chr17	77499820	77499917	6805396	0	+	0.618557	(0.58,1]	chr17	686872	13	UTR3	UTR3:EXON_MRNA	SEPTIN9	ENSG00000184640.20	ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000423034.6:ENST00000427674.6:ENST00000541152.6:ENST00000427180.5	protein_coding	protein_coding	protein_coding	protein_coding	12	139	2	1.69665	2.0688649999999997	2.44108	0.0433497	0.0372253	0.152119	0.1304
chr1	20775360	20775449	414134	0	-	0.516854	(0.485,0.523]	chr1	48420	5	INTRON	INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000419948.5:ENST00000424732.5:ENST00000417710.5	protein_coding	protein_coding	protein_coding	protein_coding	10	161	2	1.72822	2.067465	2.40671	0.0579707	0.0408356	0.175217	0.13606
chr14	23309156	23309251	5756460	0	+	0.578947	(0.523,0.58]	chr14	564868	3	UTR3	UTR3:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	BCL2L2:BCL2L2-PABPN1	ENSG00000129473.11:ENSG00000258643.6	ENST00000679219.1:ENST00000678311.1:ENST00000678502.1:ENST00000250405.10:ENST00000557579.2:ENST00000553781.5:ENST00000679000.1:ENST00000556100.3:ENST00000557008.2:ENST00000556599.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	162	2	1.60055	2.067015	2.53348	0.0601611	0.0400115	0.177994	0.134064
chr6	158567225	158567324	3063967	0	+	0.646465	(0.58,1]	chr6	297687	66	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	14	194	2	1.80984	2.06555	2.32126	0.0597227	0.0184756	0.158156	0.096739
chr3	48428952	48429052	1766724	0	-	0.8	(0.58,1]	chr3	182284	3	SS5_PROX	SS5_PROX:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000466353.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	11	153	2	1.99587	2.06364	2.13141	0.0529843	0.0236904	0.149245	0.111208
chr6	158561631	158561730	3063911	0	+	0.50505	(0.485,0.523]	chr6	297687	10	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	8	124	2	1.81447	2.061045	2.30762	0.0573061	0.0547167	0.168342	0.154343
chr22	38731996	38732095	7725139	0	+	0.646465	(0.58,1]	chr22	809289	14	UTR3	UTR3:EXON_MRNA:INTRON	GTPBP1	ENSG00000100226.16	ENST00000216044.10:ENST00000458073.5:ENST00000462332.1:ENST00000484971.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	82	2	1.81271	2.05847	2.30423	0.10463	0.0260615	0.198437	0.116811
chr12	102854141	102854240	5485488	0	-	0.454545	(0.45,0.485]	chr12	539523	8	INTRON	INTRON	PAH	ENSG00000171759.10	ENST00000553106.6:ENST00000307000.7	protein_coding	protein_coding	protein_coding	protein_coding	11	170	2	1.88048	2.05592	2.23136	0.0959675	0.0179118	0.189169	0.0948846
chr6	151319791	151319891	3040879	0	+	0.51	(0.485,0.523]	chr6	296456	135	INTRON	INTRON	AKAP12	ENSG00000131016.17	ENST00000402676.7:ENST00000253332.5	protein_coding	protein_coding	protein_coding	protein_coding	12	176	2	1.7327	2.049155	2.36561	0.0487555	0.0436979	0.160725	0.139512
chr17	72575465	72575564	6964066	0	-	0.686869	(0.58,1]	chr17	710393	7	INTRON	INTRON	LINC00511	ENSG00000227036.9	ENST00000648631.1:ENST00000648248.1:ENST00000650419.2:ENST00000581801.7:ENST00000649614.1:ENST00000650476.1:ENST00000648088.1:ENST00000650482.1:ENST00000453722.6:ENST00000650227.1:ENST00000650131.3:ENST00000649793.2:ENST00000648623.2:ENST00000649350.1:ENST00000647706.2:ENST00000649489.1:ENST00000649366.1:ENST00000649833.1:ENST00000648952.1:ENST00000648520.1:ENST00000649250.1:ENST00000647953.1:ENST00000648403.1:ENST00000649343.1:ENST00000650423.1:ENST00000648054.1:ENST00000580861.2:ENST00000649330.1:ENST00000650570.1:ENST00000650161.1:ENST00000650554.1:ENST00000648559.1	lncRNA	lncRNA	lncRNA	lncRNA	7	70	2	1.58483	2.04735	2.50987	0.0865901	0.0699995	0.195209	0.182221
chr18	6042141	6042241	7110132	0	-	0.45	(0.419,0.45]	chr18	723828	95	INTRON	INTRON	L3MBTL4	ENSG00000154655.16	ENST00000400105.6:ENST00000317931.12:ENST00000400104.7	protein_coding	protein_coding	protein_coding	protein_coding	7	124	2	2.00387	2.046945	2.09002	0.0904967	0.0489452	0.186603	0.160725
chrX	133922454	133922554	8115392	0	-	0.49	(0.485,0.523]	chrX	845529	875	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	126	2	1.75213	2.042395	2.33266	0.0731249	0.0467769	0.170083	0.156817
chr12	12560899	12560999	5375306	0	-	0.41	(0.39,0.419]	chr12	527113	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	DUSP16	ENSG00000111266.9	ENST00000298573.9:ENST00000228862.3:ENST00000539940.1:ENST00000541207.1	protein_coding	protein_coding	protein_coding	protein_coding	9	128	2	1.67618	2.042385	2.40859	0.0721506	0.0641289	0.184676	0.168159
chr21	44861371	44861456	7678449	0	-	0.623529	(0.58,1]	chr21	802759	1	SSB_PROX	SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PTTG1IP	ENSG00000183255.12	ENST00000397887.7:ENST00000445724.3:ENST00000330938.8:ENST00000397886.3:ENST00000474737.5:ENST00000494690.5:ENST00000480234.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	10	150	2	2.02916	2.041645	2.05413	0.0464293	0.0452423	0.154539	0.143232
chr11	65424869	65424969	4871590	0	+	0.66	(0.58,1]	chr11	468177	22	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000642367.1	lncRNA	lncRNA	lncRNA	lncRNA	108	1444	2	1.66711	2.0394	2.41169	0.0256032	0.0133402	0.115966	0.0789398
chr2	63000363	63000463	816930	0	+	0.45	(0.419,0.45]	chr2	92205	32	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5:ENST00000496857.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	7	126	2	1.85729	2.0389850000000003	2.22068	0.0755036	0.0647325	0.185788	0.173479
chr8	17907688	17907788	3946882	0	-	0.51	(0.485,0.523]	chr8	377064	109	INTRON	INTRON	FGL1	ENSG00000104760.17	ENST00000398056.6	protein_coding	protein_coding	protein_coding	protein_coding	22	338	2	1.82887	2.037715	2.24656	0.0674459	0.012975	0.163557	0.0779863
chr20	62956564	62956664	7508261	0	+	0.52	(0.485,0.523]	chr20	783171	4	SS3_PROX	SS3_PROX:INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5:ENST00000411611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	8	124	2	1.69349	2.037635	2.38178	0.0695369	0.0509899	0.194631	0.148503
chr6	158565027	158565127	3063945	0	+	0.6	(0.58,1]	chr6	297687	44	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	7	98	2	1.71727	2.0372250000000003	2.35718	0.0706167	0.0431826	0.196546	0.138436
chr11	2693696	2693796	4972248	0	-	0.61	(0.58,1]	chr11	481197	855	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	6	76	2	1.92256	2.036955	2.15135	0.0825864	0.046259	0.179396	0.155604
chr14	89256608	89256708	6026664	0	-	0.45	(0.419,0.45]	chr14	591432	254	INTRON	INTRON	FOXN3	ENSG00000053254.16	ENST00000345097.8:ENST00000557258.6:ENST00000261302.9:ENST00000615335.4:ENST00000555353.5:ENST00000553840.5:ENST00000557718.5:ENST00000553353.5:ENST00000556916.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	100	2	1.88782	2.036175	2.18453	0.101185	0.0611405	0.196131	0.18013
chr17	55274783	55274883	6757206	0	+	0.53	(0.523,0.58]	chr17	681704	63	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	130	2	1.96329	2.034285	2.10528	0.0960312	0.0253636	0.189169	0.115427
chr1	20774905	20775005	414129	0	-	0.51	(0.485,0.523]	chr1	48419	14	UTR5	UTR5:EXON_MRNA:INTRON	HP1BP3	ENSG00000127483.19	ENST00000438032.6:ENST00000312239.10:ENST00000375003.6:ENST00000419948.5:ENST00000424732.5:ENST00000417710.5	protein_coding	protein_coding	protein_coding	protein_coding	6	99	2	1.94261	2.033975	2.12534	0.0756939	0.062577	0.181719	0.173898
chr11	65443043	65443143	4871772	0	+	0.45	(0.419,0.45]	chr11	468177	204	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	111	1933	2	1.85859	2.03321	2.20783	0.0363915	0.024266	0.128173	0.113231
chr17	78197658	78197757	6805570	0	+	0.585859	(0.58,1]	chr17	686915	2	INTRON	INTRON	AFMID	ENSG00000183077.16	ENST00000591256.5:ENST00000409257.10:ENST00000327898.9:ENST00000591952.5:ENST00000588800.5:ENST00000588199.5:ENST00000589107.5:ENST00000592988.5:ENST00000586542.5:ENST00000591538.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	12	147	2	1.88128	2.032865	2.18445	0.0478088	0.0301926	0.144601	0.126768
chr6	158565327	158565426	3063948	0	+	0.59596	(0.58,1]	chr6	297687	47	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	8	114	2	1.84391	2.032485	2.22106	0.0546208	0.0448257	0.168056	0.14054
chr20	20465433	20465533	7533852	0	-	0.57	(0.523,0.58]	chr20	786266	529	INTRON	INTRON	RALGAPA2	ENSG00000188559.16	ENST00000202677.12:ENST00000430436.5	protein_coding	protein_coding	protein_coding	protein_coding	7	115	2	1.98394	2.030995	2.07805	0.0797954	0.0476935	0.176933	0.158666
chr2	215432464	215432553	1368640	0	-	0.449438	(0.419,0.45]	chr2	145798	1	INTRON	INTRON	FN1	ENSG00000115414.21	ENST00000421182.5:ENST00000323926.10:ENST00000336916.8:ENST00000357867.8:ENST00000359671.5:ENST00000443816.5:ENST00000446046.5:ENST00000354785.11:ENST00000432072.6:ENST00000356005.8:ENST00000426059.1	protein_coding	protein_coding	protein_coding	protein_coding	11	169	2	1.67046	2.02969	2.38892	0.0620538	0.0593067	0.180957	0.157157
chr19	1409908	1409993	7187445	0	+	0.694118	(0.58,1]	chr19	731283	2	EXON_LNCRNA	EXON_LNCRNA:INTRON	DAZAP1	ENSG00000071626.17	ENST00000336761.10:ENST00000233078.9:ENST00000592522.5:ENST00000586579.5:ENST00000587079.5:ENST00000592453.2:ENST00000590419.5	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	13	158	2	1.58925	2.0294	2.46955	0.0551407	0.0285176	0.169218	0.115242
chr17	55276483	55276583	6757223	0	+	0.58	(0.523,0.58]	chr17	681704	80	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	26	385	2	1.81944	2.027945	2.23645	0.068624	0.0109379	0.165231	0.0706693
chr8	143542241	143542340	3926939	0	+	0.50505	(0.485,0.523]	chr8	374966	7	EXON_LNCRNA	EXON_LNCRNA	ENSG00000287576	ENSG00000287576.1	ENST00000653168.1	lncRNA	lncRNA	lncRNA	lncRNA	10	123	2	1.58878	2.02595	2.46312	0.0656918	0.060188	0.1884	0.158506
chr11	65443443	65443542	4871776	0	+	0.383838	(0.36,0.39]	chr11	468177	208	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	132	2242	2	1.76761	2.0259	2.28419	0.0292173	0.0282866	0.122533	0.116079
chr17	81999845	81999945	6815295	0	+	0.63	(0.58,1]	chr17	688640	26	INTRON	INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	129	2	1.69689	2.0254	2.35391	0.0600041	0.0390074	0.158506	0.142605
chr13	98277498	98277598	5635006	0	+	0.51	(0.485,0.523]	chr13	553480	323	INTRON	INTRON	FARP1	ENSG00000152767.17	ENST00000595437.5:ENST00000319562.11:ENST00000627049.2:ENST00000596580.2:ENST00000598389.5	protein_coding	protein_coding	protein_coding	protein_coding	8	125	2	1.72959	2.023405	2.31722	0.10454	0.029192	0.19835	0.125091
chr14	19302832	19302930	5928390	0	-	0.571429	(0.523,0.58]	chr14	580401	43	EXON_LNCRNA	EXON_LNCRNA:INTRON	DUXAP10	ENSG00000244306.11	ENST00000648085.1:ENST00000614614.4:ENST00000612696.4:ENST00000619784.4:ENST00000616922.4:ENST00000624585.3	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	9	146	2	1.70632	2.0207100000000002	2.3351	0.067389	0.0460446	0.192827	0.142879
chr3	172064821	172064920	1627715	0	+	0.454545	(0.45,0.485]	chr3	170535	175	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	7	110	2	1.93956	2.01923	2.0989	0.102257	0.0370732	0.197541	0.139793
chr5	95959679	95959779	2731853	0	-	0.55	(0.523,0.58]	chr5	268268	163	INTRON	INTRON	ELL2	ENSG00000118985.16	ENST00000237853.9:ENST00000513343.1:ENST00000506628.1:ENST00000635633.1:ENST00000515020.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	87	2	1.91177	2.018495	2.12522	0.0984283	0.0524626	0.192982	0.167062
chr20	44412699	44412798	7483048	0	+	0.636364	(0.58,1]	chr20	779658	41	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000619550.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	84	2	1.91069	2.016965	2.12324	0.0642584	0.0607034	0.179468	0.161669
chr11	65433757	65433856	4871679	0	+	0.414141	(0.39,0.419]	chr11	468177	111	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	50	902	2	1.94629	2.01639	2.08649	0.0539223	0.0181891	0.15128	0.0956413
chr11	65433956	65434056	4871681	0	+	0.24	[0,0.29]	chr11	468177	113	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	47	681	2	2.00164	2.01239	2.02314	0.0324909	0.0167691	0.12202	0.0917154
chr11	65430661	65430761	4871648	0	+	0.45	(0.419,0.45]	chr11	468177	80	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	59	1090	2	2.00093	2.0095349999999996	2.01814	0.0518619	0.020091	0.148503	0.101294
chr6	157312284	157312384	3298414	0	-	0.53	(0.523,0.58]	chr6	319197	189	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	7	96	2	1.8273	2.007075	2.18685	0.0903217	0.052913	0.186369	0.167062
chr12	56596374	56596472	5437616	0	-	0.602041	(0.58,1]	chr12	534676	9	UTR3	UTR3:EXON_MRNA	BAZ2A	ENSG00000076108.12	ENST00000379441.7:ENST00000549884.6:ENST00000551812.5	protein_coding	protein_coding	protein_coding	protein_coding	6	84	2	1.85952	2.0039700000000003	2.14842	0.0671431	0.0616418	0.192171	0.158854
chr6	157312784	157312884	3298419	0	-	0.5	(0.485,0.523]	chr6	319197	194	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	10	138	2	1.66231	2.003745	2.34518	0.0606512	0.0540288	0.179374	0.151545
chr2	11622588	11622686	721128	0	+	0.520408	(0.485,0.523]	chr2	84248	12	INTRON	INTRON	GREB1	ENSG00000196208.14	ENST00000381486.7:ENST00000234142.9:ENST00000396123.2	protein_coding	protein_coding	protein_coding	protein_coding	11	147	2	1.58878	2.00313	2.41748	0.0656918	0.0481688	0.1884	0.144601
chr20	37506239	37506338	7559830	0	-	0.515152	(0.485,0.523]	chr20	789576	24	INTRON	INTRON	BLCAP	ENSG00000166619.15	ENST00000411780.1:ENST00000467603.1	protein_coding	processed_transcript	protein_coding	processed_transcript	10	146	2	1.91222	2.0022900000000003	2.09236	0.0886157	0.0264149	0.183874	0.118113
chr6	158562030	158562130	3063915	0	+	0.62	(0.58,1]	chr6	297687	14	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	7	90	2	1.9335	2.000775	2.06805	0.0870471	0.0335725	0.182758	0.133139
chr11	2681600	2681700	4972127	0	-	0.62	(0.58,1]	chr11	481197	734	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	31	374	2	1.73943	1.999955	2.26048	0.0274016	0.0249205	0.119529	0.10758
chr5	87268261	87268356	2479171	0	+	0.684211	(0.58,1]	chr5	247011	5	UTR5	UTR5:EXON_MRNA	RASA1	ENSG00000145715.15	ENST00000274376.11:ENST00000515800.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	6	81	2	1.99031	1.999095	2.00788	0.0796315	0.0498302	0.176933	0.161202
chr1	8021871	8021970	390993	0	-	0.50505	(0.485,0.523]	chr1	44903	58	INTRON	INTRON	ERRFI1	ENSG00000116285.13	ENST00000474874.5:ENST00000377482.10:ENST00000469499.5:ENST00000487559.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	125	2	1.78092	1.9978	2.21468	0.0970269	0.0363164	0.190565	0.139793
chr2	42256630	42256730	773917	0	+	0.35	(0.33,0.36]	chr2	88939	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	EML4	ENSG00000143924.19	ENST00000318522.10:ENST00000402711.6:ENST00000409040.1:ENST00000401738.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	15	243	2	1.6004	1.99722	2.39404	0.0643684	0.0361654	0.184901	0.127863
chr15	24982536	24982635	6063670	0	+	0.363636	(0.36,0.39]	chr15	595387	2	EXON_MRNA	EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	ENSG00000214265:SNHG14	ENSG00000214265.11:ENSG00000224078.15	ENST00000551312.6:ENST00000557230.1:ENST00000557108.6:ENST00000551631.7:ENST00000551361.1	protein_coding	retained_intron	protein_coding:lncRNA	retained_intron:nonsense_mediated_decay:lncRNA	11	191	2	1.96541	1.9928249999999998	2.02024	0.0693758	0.0439878	0.167001	0.153511
chr8	133297113	133297208	4084302	0	-	0.705263	(0.58,1]	chr8	388372	5	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:SS5_ADJ:SS5_PROX:INTRON	NDRG1	ENSG00000104419.17	ENST00000323851.13:ENST00000414097.6:ENST00000517599.5:ENST00000518176.5:ENST00000522476.5:ENST00000518066.5:ENST00000522377.5:ENST00000520230.5:ENST00000518010.5:ENST00000518480.5:ENST00000519228.5:ENST00000520943.5:ENST00000521544.5:ENST00000523892.5:ENST00000674804.1:ENST00000674605.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	22	284	2	1.65167	1.9893	2.32693	0.0663327	0.038688	0.162385	0.142489
chr11	65428464	65428564	4871626	0	+	0.49	(0.485,0.523]	chr11	468177	58	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	84	1327	2	1.6961	1.989255	2.28241	0.03073	0.0252369	0.127334	0.108066
chr11	65434156	65434256	4871683	0	+	0.45	(0.419,0.45]	chr11	468177	115	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	97	1896	2	1.70583	1.98759	2.26935	0.0361248	0.032601	0.139793	0.122397
chr7	75935007	75935107	3396805	0	+	0.6	(0.58,1]	chr7	328054	117	INTRON	INTRON	POR	ENSG00000127948.16	ENST00000453773.5:ENST00000439963.5:ENST00000448410.5:ENST00000461988.6:ENST00000471238.5:ENST00000421059.1:ENST00000394893.5:ENST00000412521.5:ENST00000414186.5:ENST00000432753.5:ENST00000449920.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	103	2	1.80484	1.98656	2.16828	0.0899021	0.0266596	0.185791	0.118302
chr2	62895062	62895162	815861	0	+	0.44	(0.419,0.45]	chr2	92141	134	INTRON	INTRON	EHBP1	ENSG00000115504.15	ENST00000405015.7:ENST00000431489.6:ENST00000263991.9:ENST00000405289.5	protein_coding	protein_coding	protein_coding	protein_coding	18	298	2	1.72001	1.985665	2.25132	0.0989614	0.0167704	0.193891	0.0917195
chr11	65424570	65424670	4871587	0	+	0.39	(0.36,0.39]	chr11	468177	19	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000642367.1	lncRNA	lncRNA	lncRNA	lncRNA	173	2666	2	1.53383	1.98431	2.43479	0.046536	0.0225031	0.156155	0.102962
chr1	8025258	8025358	391027	0	-	0.35	(0.33,0.36]	chr1	44903	92	INTRON	INTRON	ERRFI1	ENSG00000116285.13	ENST00000474874.5:ENST00000377482.10:ENST00000469499.5:ENST00000487559.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	140	2	1.8674	1.982685	2.09797	0.0986025	0.0323344	0.193204	0.130292
chr11	65436453	65436553	4871706	0	+	0.55	(0.523,0.58]	chr11	468177	138	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	59	983	2	1.86591	1.980955	2.096	0.0356378	0.0233995	0.127643	0.11038
chr6	157312984	157313083	3298421	0	-	0.545455	(0.523,0.58]	chr6	319197	196	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	56	806	2	1.89474	1.980145	2.06555	0.0525587	0.0130037	0.14912	0.0781563
chr12	120978217	120978316	5524702	0	-	0.575758	(0.523,0.58]	chr12	544219	9	INTRON	INTRON	HNF1A-AS1	ENSG00000241388.5	ENST00000619441.1:ENST00000647473.1:ENST00000646404.1:ENST00000537361.1:ENST00000433033.3:ENST00000535301.2	lncRNA	lncRNA	lncRNA	lncRNA	7	105	2	1.8776	1.978345	2.07909	0.0812034	0.0561789	0.178089	0.171933
chr19	13139874	13139972	7212652	0	+	0.602041	(0.58,1]	chr19	736450	16	UTR3	UTR3:EXON_MRNA	NACC1	ENSG00000160877.6	ENST00000292431.5	protein_coding	protein_coding	protein_coding	protein_coding	8	98	2	1.9335	1.976615	2.01973	0.0870471	0.0308588	0.182758	0.127805
chr2	200332170	200332270	986212	0	+	0.39	(0.36,0.39]	chr2	108291	23	INTRON	INTRON	SPATS2L	ENSG00000196141.14	ENST00000439084.5:ENST00000409718.5:ENST00000358677.9:ENST00000409988.7:ENST00000409385.5:ENST00000439395.5:ENST00000444012.5:ENST00000451764.6:ENST00000360760.9:ENST00000423749.5:ENST00000457757.5:ENST00000471601.5:ENST00000428692.5:ENST00000453663.5:ENST00000409140.8:ENST00000459656.5:ENST00000471533.5:ENST00000409397.6:ENST00000619961.4	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	178	2	1.95893	1.97634	1.99375	0.0817147	0.0367412	0.179109	0.139793
chr17	7177326	7177402	6847848	0	-	0.657895	(0.58,1]	chr17	693466	1	UTR5	UTR5:EXON_MRNA:SS3_ADJ:SS3_PROX:INTRON	ASGR1	ENSG00000141505.12	ENST00000269299.8:ENST00000619926.4:ENST00000380920.8:ENST00000574388.5:ENST00000572879.5:ENST00000570576.1:ENST00000573596.1:ENST00000573083.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	176	2	1.82235	1.97438	2.12641	0.0667639	0.0181333	0.16272	0.0955836
chr7	101138012	101138107	3431752	0	+	0.536842	(0.523,0.58]	chr7	332344	7	UTR3	UTR3:EXON_MRNA	SERPINE1	ENSG00000106366.9	ENST00000223095.5	protein_coding	protein_coding	protein_coding	protein_coding	43	707	2	1.87126	1.97245	2.07364	0.0529716	0.0208495	0.149214	0.102843
chr1	182384009	182384108	630208	0	-	0.525253	(0.523,0.58]	chr1	74202	61	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	GLUL	ENSG00000135821.19	ENST00000331872.11:ENST00000642379.1:ENST00000311223.9:ENST00000417584.6:ENST00000339526.8:ENST00000491322.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	134	2	1.67528	1.970955	2.26663	0.061194900000000003	0.0586268	0.176072	0.158506
chr3	172136044	172136144	1628433	0	+	0.47	(0.45,0.485]	chr3	170555	21	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5:ENST00000478016.1:ENST00000443501.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	8	124	2	1.84243	1.9706649999999999	2.0989	0.101295	0.0370732	0.196131	0.139793
chr11	65435754	65435854	4871699	0	+	0.55	(0.523,0.58]	chr11	468177	131	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	47	779	2	1.70054	1.9686949999999999	2.23685	0.0351508	0.029006	0.137519	0.116079
chr2	42331865	42331962	774695	0	+	0.28866000000000003	[0,0.29]	chr2	89059	18	UTR3	UTR3:EXON_MRNA	EML4	ENSG00000143924.19	ENST00000318522.10:ENST00000406175.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	6	84	2	1.92207	1.9669400000000001	2.01181	0.0786127	0.0629877	0.182776	0.175203
chr11	65432259	65432359	4871664	0	+	0.35	(0.33,0.36]	chr11	468177	96	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2:ENST00000687943.1	lncRNA	lncRNA	lncRNA	lncRNA	38	650	2	1.9442	1.9662950000000001	1.98839	0.048327	0.0262364	0.144728	0.117545
chr11	65436053	65436153	4871702	0	+	0.56	(0.523,0.58]	chr11	468177	134	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	64	993	2	1.64957	1.9646750000000002	2.27978	0.0353909	0.0263175	0.137983	0.110626
chr17	82000944	82001044	6815306	0	+	0.73	(0.58,1]	chr17	688640	37	INTRON	INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	88	2	1.77045	1.9609	2.15135	0.0825864	0.0472159	0.179396	0.157152
chr6	34588081	34588180	3124186	0	-	0.555556	(0.523,0.58]	chr6	304700	9	UTR3	UTR3:EXON_MRNA	ILRUN	ENSG00000196821.10	ENST00000374026.7:ENST00000374023.8	protein_coding	protein_coding	protein_coding	protein_coding	7	104	2	1.8426	1.960845	2.07909	0.0812034	0.0602052	0.178102	0.178089
chr11	2685899	2685999	4972170	0	-	0.61	(0.58,1]	chr11	481197	777	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	14	142	2	1.53482	1.9567200000000002	2.37862	0.0564326	0.0415873	0.171982	0.136301
chr16	50597998	50598098	6451907	0	+	0.59	(0.58,1]	chr16	639902	394	INTRON	INTRON	NKD1	ENSG00000140807.7	ENST00000268459.6:ENST00000564336.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	14	172	2	1.70664	1.95465	2.20266	0.0810989	0.0149131	0.177951	0.0848468
chr16	81455922	81456022	6507850	0	+	0.63	(0.58,1]	chr16	645906	100	INTRON	INTRON	CMIP	ENSG00000153815.18	ENST00000537098.8	protein_coding	protein_coding	protein_coding	protein_coding	5	67	2	1.81271	1.952735	2.09276	0.10463	0.0619333	0.198437	0.180615
chr20	44410329	44410428	7483024	0	+	0.464646	(0.45,0.485]	chr20	779658	17	INTRON	INTRON	HNF4A	ENSG00000101076.19	ENST00000316673.8:ENST00000457232.5:ENST00000609795.5:ENST00000316099.10:ENST00000372920.1:ENST00000443598.6:ENST00000415691.2:ENST00000683148.1:ENST00000683657.1:ENST00000619550.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	7	96	2	1.79499	1.9523800000000002	2.10977	0.103365	0.0584919	0.197541	0.175686
chr17	77499723	77499820	6805395	0	+	0.659794	(0.58,1]	chr17	686872	12	UTR3	UTR3:EXON_MRNA	SEPTIN9	ENSG00000184640.20	ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000423034.6:ENST00000427674.6:ENST00000541152.6:ENST00000427180.5	protein_coding	protein_coding	protein_coding	protein_coding	28	343	2	1.74539	1.948905	2.1524200000000002	0.0596702	0.0112041	0.15804	0.071709
chr11	65429063	65429163	4871632	0	+	0.32	(0.29,0.33]	chr11	468177	64	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	92	1313	2	1.70716	1.9486	2.19004	0.0641569	0.00947253	0.161669	0.0650078
chr3	58009056	58009156	1483044	0	+	0.6	(0.58,1]	chr3	159571	2	SS5_PROX	SS5_PROX:INTRON	FLNB	ENSG00000136068.16	ENST00000682097.1:ENST00000358537.7:ENST00000429972.6:ENST00000490882.5:ENST00000683511.1:ENST00000295956.9:ENST00000684506.1:ENST00000684607.1:ENST00000682871.1:ENST00000682868.1:ENST00000684107.1:ENST00000684517.1:ENST00000682987.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	6	78	2	1.9335	1.946805	1.96011	0.0870471	0.0549599	0.182758	0.168901
chr6	157310386	157310485	3298395	0	-	0.565657	(0.523,0.58]	chr6	319197	170	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	7	101	2	1.91424	1.946	1.97776	0.102931	0.0458561	0.197541	0.154743
chr6	157313583	157313683	3298427	0	-	0.56	(0.523,0.58]	chr6	319197	202	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	16	210	2	1.69109	1.94475	2.19841	0.0510034	0.0452856	0.154539	0.148503
chr22	15816639	15816735	7682889	0	+	0.614583	(0.58,1]	chr22	803564	7	INTRON	INTRON	DUXAP8	ENSG00000206195.11	ENST00000413768.5:ENST00000437781.5:ENST00000383038.7:ENST00000447898.5	lncRNA	lncRNA	lncRNA	lncRNA	6	71	2	1.88377	1.94116	1.99855	0.103709	0.0502411	0.197611	0.16215
chr11	2690397	2690497	4972215	0	-	0.61	(0.58,1]	chr11	481197	822	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	17	196	2	1.79563	1.937455	2.07928	0.0456847	0.03082	0.142336	0.127657
chr17	55276083	55276183	6757219	0	+	0.4	(0.39,0.419]	chr17	681704	76	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	12	162	2	1.55691	1.9307949999999998	2.30468	0.0719577	0.064297000000000007	0.199502	0.161669
chr14	19097598	19097698	5754316	0	+	0.64	(0.58,1]	chr14	564239	38	INTRON	INTRON	DUXAP9	ENSG00000225210.10	ENST00000547220.5:ENST00000610585.4:ENST00000621361.4:ENST00000619938.1:ENST00000644980.1	transcribed_processed_pseudogene	processed_transcript	transcribed_processed_pseudogene	processed_transcript	5	62	2	1.85952	1.929035	1.99855	0.103709	0.0671431	0.197611	0.192171
chr6	158629629	158629729	3064604	0	+	0.61	(0.58,1]	chr6	297766	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	8	104	2	1.80292	1.925675	2.04843	0.0604171	0.059442300000000003	0.176598	0.158506
chr6	157312184	157312284	3298413	0	-	0.5	(0.485,0.523]	chr6	319197	188	INTRON	INTRON	TMEM242	ENSG00000215712.11	ENST00000400788.9	protein_coding	protein_coding	protein_coding	protein_coding	10	130	2	1.66231	1.9255	2.18869	0.0688144	0.0606512	0.179374	0.165663
chr7	23411756	23411855	3552618	0	-	0.555556	(0.523,0.58]	chr7	343215	63	INTRON	INTRON	IGF2BP3	ENSG00000136231.14	ENST00000258729.8:ENST00000421467.6:ENST00000468263.5:ENST00000479504.5:ENST00000466809.6:ENST00000491719.5:ENST00000465058.5:ENST00000469723.5:ENST00000476938.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	8	112	2	1.70632	1.925335	2.14435	0.0737044	0.067389	0.192827	0.17051
chr17	55295070	55295170	6757414	0	+	0.37	(0.36,0.39]	chr17	681718	57	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1:ENST00000573020.1:ENST00000573422.5:ENST00000575868.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	15	229	2	1.77452	1.92423	2.07394	0.0639791	0.0464372	0.161669	0.156036
chr13	97362535	97362635	5632216	0	+	0.49	(0.485,0.523]	chr13	553214	45	INTRON	INTRON	MBNL2	ENSG00000139793.20	ENST00000397601.5:ENST00000343600.9:ENST00000376673.8:ENST00000679496.1:ENST00000345429.10:ENST00000469707.5:ENST00000449284.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	8	110	2	1.91666	1.921375	1.92609	0.102434	0.0434488	0.197541	0.152343
chr6	158565826	158565926	3063953	0	+	0.69	(0.58,1]	chr6	297687	52	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	12	145	2	1.71208	1.9202949999999999	2.12851	0.085651	0.0204098	0.181766	0.102668
chr20	48932803	48932903	7490263	0	+	0.58	(0.523,0.58]	chr20	780774	104	INTRON	INTRON	ARFGEF2	ENSG00000124198.10	ENST00000371917.5:ENST00000681399.1:ENST00000679436.1:ENST00000681885.1:ENST00000681021.1:ENST00000680871.1:ENST00000681656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	100	2	1.8426	1.9149	1.9872	0.0928035	0.0602052	0.188571	0.178102
chr1	155313672	155313772	249834	0	+	0.55	(0.523,0.58]	chr1	29181	8	INTRON	INTRON	FDPS	ENSG00000160752.15	ENST00000611010.4:ENST00000468479.5:ENST00000447866.5:ENST00000461507.5:ENST00000474345.5:ENST00000471117.5:ENST00000368356.9:ENST00000467076.5:ENST00000495308.5:ENST00000491013.5:ENST00000356657.10:ENST00000465559.5:ENST00000470171.5:ENST00000612683.1:ENST00000489003.5:ENST00000477057.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	9	139	2	1.82561	1.911435	1.99726	0.0844721	0.0559624	0.181766	0.171577
chr22	24553557	24553656	7772362	0	-	0.606061	(0.58,1]	chr22	815203	42	INTRON	INTRON	GUCD1	ENSG00000138867.17	ENST00000621833.4:ENST00000407471.7:ENST00000435822.6:ENST00000398245.8:ENST00000404664.7:ENST00000447813.6:ENST00000402766.5:ENST00000407973.2:ENST00000468170.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	8	100	2	1.89825	1.910405	1.92256	0.0774569	0.046259	0.175203	0.155604
chr3	48422947	48423047	1766659	0	-	0.61	(0.58,1]	chr3	182269	1	SS3_ADJ	SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	PLXNB1	ENSG00000164050.13	ENST00000296440.11:ENST00000358536.8:ENST00000456774.5:ENST00000449094.5:ENST00000466353.1:ENST00000473683.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	7	86	2	1.80292	1.910405	2.01789	0.0762182	0.059442300000000003	0.176598	0.174484
chr11	65433557	65433657	4871677	0	+	0.27	[0,0.29]	chr11	468177	109	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	21	286	2	1.70878	1.909065	2.10935	0.0437093	0.0346679	0.153195	0.12648
chr17	77499239	77499336	6805390	0	+	0.628866	(0.58,1]	chr17	686872	7	UTR3	UTR3:EXON_MRNA	SEPTIN9	ENSG00000184640.20	ENST00000427177.6:ENST00000431235.6:ENST00000449803.6:ENST00000329047.13:ENST00000423034.6:ENST00000427674.6:ENST00000541152.6:ENST00000427180.5	protein_coding	protein_coding	protein_coding	protein_coding	7	86	2	1.76073	1.9028450000000001	2.04496	0.072985	0.0647557	0.185835	0.169793
chr6	99401332	99401431	3208520	0	-	0.434343	(0.419,0.45]	chr6	311512	8	CDS	CDS:UTR3:EXON_MRNA:INTRON	PNISR	ENSG00000132424.17	ENST00000681615.1:ENST00000369239.10:ENST00000647811.1:ENST00000481229.2:ENST00000679525.1:ENST00000681611.1:ENST00000438806.5	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	146	2	1.78017	1.901585	2.023	0.0859666	0.0647099	0.185739	0.181766
chrX	133885061	133885161	8115018	0	-	0.35	(0.33,0.36]	chrX	845529	501	INTRON	INTRON	GPC3	ENSG00000147257.16	ENST00000370818.8:ENST00000394299.7:ENST00000689310.1:ENST00000631057.2:ENST00000684880.1:ENST00000692630.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	10	122	2	1.67308	1.9003449999999997	2.12761	0.101675	0.0587687	0.19661	0.176157
chr2	63841044	63841138	817606	0	+	0.62766	(0.58,1]	chr2	92292	2	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA	UGP2	ENSG00000169764.16	ENST00000466642.5:ENST00000484142.2:ENST00000394417.7:ENST00000467648.6:ENST00000482668.5:ENST00000497510.5:ENST00000483461.1:ENST00000480679.5:ENST00000613823.2:ENST00000483108.5:ENST00000487469.5:ENST00000493222.5:ENST00000676870.1:ENST00000678298.1:ENST00000677841.1:ENST00000627474.3:ENST00000467400.5:ENST00000676780.1:ENST00000487640.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	6	75	2	1.87437	1.89253	1.91069	0.0953385	0.0607034	0.189038	0.179468
chr19	6706396	6706483	7322819	0	-	0.62069	(0.58,1]	chr19	756484	3	SS3_PROX	SS3_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000695653.1:ENST00000695654.1:ENST00000695692.1:ENST00000695652.1:ENST00000695655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	13	150	2	1.73086	1.8907150000000001	2.05057	0.0529204	0.0428979	0.150612	0.149149
chrX	109686835	109686934	8090999	0	-	0.363636	(0.36,0.39]	chrX	843698	10	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000505855.1:ENST00000508092.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	271	2	1.85379	1.886505	1.91922	0.0730827	0.0373859	0.170016	0.139793
chr11	2691297	2691397	4972224	0	-	0.57	(0.523,0.58]	chr11	481197	831	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	14	182	2	1.88045	1.88601	1.89157	0.0824599	0.0327494	0.179396	0.131673
chr2	42198929	42199029	773336	0	+	0.47	(0.45,0.485]	chr2	88922	289	INTRON	INTRON	EML4	ENSG00000143924.19	ENST00000318522.10:ENST00000402711.6:ENST00000409040.1:ENST00000482660.1:ENST00000401738.3	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	18	264	2	1.77972	1.8813900000000001	1.98306	0.0796995	0.0292243	0.176933	0.125102
chr2	137967941	137968041	903391	0	+	0.38	(0.36,0.39]	chr2	101880	3	SS5_PROX	SS5_PROX:INTRON	HNMT	ENSG00000150540.14	ENST00000410115.5:ENST00000329366.8:ENST00000280097.5:ENST00000475675.5:ENST00000467390.5:ENST00000485653.1:ENST00000480534.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay:processed_transcript	12	189	2	1.76998	1.879475	1.98897	0.0948734	0.0419239	0.189021	0.149108
chr3	52804460	52804548	1474678	0	+	0.602273	(0.58,1]	chr3	158694	6	EXON_MRNA	EXON_MRNA:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	ITIH3	ENSG00000162267.13	ENST00000621946.4:ENST00000449956.3:ENST00000416872.6:ENST00000495622.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	14	183	2	1.83411	1.87126	1.90841	0.0520132	0.0468531	0.156896	0.148503
chr11	65426767	65426867	4871609	0	+	0.41	(0.39,0.419]	chr11	468177	41	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	67	1095	2	1.74945	1.86986	1.99027	0.0497333	0.0336158	0.147101	0.133139
chr6	35885523	35885623	3127776	0	-	0.34	(0.33,0.36]	chr6	304964	108	INTRON	INTRON	SRPK1	ENSG00000096063.16	ENST00000373825.7:ENST00000423325.6:ENST00000346162.10:ENST00000361690.7:ENST00000510290.5:ENST00000373821.6	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	9	110	2	1.61045	1.86903	2.12761	0.101675	0.0710277	0.197667	0.19661
chr2	54663870	54663967	800397	0	+	0.474227	(0.45,0.485]	chr2	90972	11	EXON_MRNA	EXON_MRNA:SS3_PROX:INTRON	SPTBN1	ENSG00000115306.16	ENST00000615901.4:ENST00000356805.9:ENST00000467371.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	18	238	2	1.72126	1.868505	2.01575	0.101907	0.0218761	0.197055	0.106883
chr7	73607672	73607772	3602942	0	-	0.64	(0.58,1]	chr7	347653	1	SS3_ADJ	SS3_ADJ:SS3_PROX:INTRON	MLXIPL	ENSG00000009950.16	ENST00000354613.5:ENST00000345114.9:ENST00000414749.6:ENST00000429400.6:ENST00000313375.8:ENST00000434326.5:ENST00000453275.1:ENST00000456640.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	7	75	2	1.6588	1.8678850000000002	2.07697	0.0924023	0.0677297	0.193274	0.188571
chr19	56837751	56837818	7410698	0	-	0.61194	(0.58,1]	chr19	771673	1	UTR5	UTR5:EXON_MRNA:INTRON	ZIM2:PEG3	ENSG00000269699.7:ENSG00000198300.14	ENST00000593711.6:ENST00000689654.1:ENST00000629319.3:ENST00000599935.5:ENST00000693159.1:ENST00000650111.1:ENST00000648694.1:ENST00000326441.15:ENST00000649233.1:ENST00000649680.1:ENST00000649876.1:ENST00000649428.1:ENST00000650632.1:ENST00000650102.1:ENST00000649735.1:ENST00000647621.1:ENST00000598410.5:ENST00000593695.5:ENST00000599577.5:ENST00000594389.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	117	2	1.71727	1.867295	2.01732	0.0706167	0.0560658	0.196546	0.154188
chr11	65436952	65437052	4871711	0	+	0.38	(0.36,0.39]	chr11	468177	143	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	36	571	2	1.66777	1.866185	2.0646	0.0480102	0.0449914	0.154539	0.144601
chr2	166609636	166609736	1306878	0	-	0.57	(0.523,0.58]	chr2	140165	356	INTRON	INTRON	SCN7A	ENSG00000136546.17	ENST00000650747.1	protein_coding	protein_coding	protein_coding	protein_coding	26	277	2	1.74749	1.865715	1.98394	0.0797954	0.0310847	0.176933	0.127822
chr11	65432858	65432958	4871670	0	+	0.38	(0.36,0.39]	chr11	468177	102	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2:ENST00000687943.1	lncRNA	lncRNA	lncRNA	lncRNA	71	1183	2	1.73615	1.86401	1.99187	0.0486218	0.0348039	0.145133	0.136305
chr8	22389451	22389550	3770243	0	+	0.686869	(0.58,1]	chr8	362727	96	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	8	82	2	1.64939	1.86318	2.07697	0.0924023	0.0612415	0.188571	0.18013
chr11	65437451	65437551	4871716	0	+	0.39	(0.36,0.39]	chr11	468177	148	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	50	775	2	1.72802	1.86102	1.99402	0.0512017	0.0363131	0.148503	0.139793
chr16	50557927	50558026	6451506	0	+	0.626263	(0.58,1]	chr16	639901	27	EXON_MRNA	EXON_MRNA:INTRON	NKD1:ENSG00000278909	ENSG00000140807.7:ENSG00000278909.1	ENST00000268459.6:ENST00000564336.1:ENST00000623140.1	protein_coding	protein_coding	protein_coding:TEC	protein_coding:TEC:processed_transcript	16	177	2	1.71208	1.8593950000000001	2.00671	0.085651	0.0192177	0.181766	0.0994526
chr19	934439	934538	7185190	0	+	0.646465	(0.58,1]	chr19	730741	13	INTRON	INTRON	ARID3A	ENSG00000116017.11	ENST00000263620.8:ENST00000587532.5:ENST00000457152.3	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	11	129	2	1.5476	1.8579400000000001	2.16828	0.104816	0.0266596	0.198764	0.118302
chr2	61536953	61537035	1158365	0	-	0.5	(0.485,0.523]	chr2	126969	4	UTR5	UTR5:EXON_MRNA:SS5_ADJ:SS5_PROX:INTRON	XPO1	ENSG00000082898.19	ENST00000676553.1:ENST00000677556.1:ENST00000677814.1:ENST00000676771.1:ENST00000677803.1:ENST00000677239.1:ENST00000678790.1:ENST00000677928.1:ENST00000678182.1:ENST00000677150.1:ENST00000678172.1:ENST00000678360.1:ENST00000678081.1:ENST00000676889.1:ENST00000676783.1:ENST00000679035.1:ENST00000677422.1:ENST00000677417.1:ENST00000677813.1:ENST00000401558.7:ENST00000428210.5:ENST00000677290.1:ENST00000677850.1:ENST00000451765.6:ENST00000676789.1:ENST00000678741.1:ENST00000404992.6:ENST00000406957.5:ENST00000443240.5:ENST00000481214.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	7	96	2	1.79404	1.85535	1.91666	0.102434	0.0665927	0.197541	0.190703
chr5	141298105	141298205	2776119	0	-	0.62	(0.58,1]	chr5	272382	338	INTRON	INTRON	TAF7	ENSG00000178913.9	ENST00000686518.1:ENST00000624699.1	protein_coding	processed_transcript	protein_coding	processed_transcript	8	82	2	1.71119	1.85487	1.99855	0.103709	0.053709	0.197611	0.167824
chr17	38725697	38725797	6729340	0	+	0.65	(0.58,1]	chr17	676371	2	UTR3	UTR3:EXON_MRNA:EXON_LNCRNA	MLLT6	ENSG00000275023.5	ENST00000621332.5:ENST00000619356.1:ENST00000615741.1:ENST00000615441.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	11	121	2	1.82876	1.84938	1.87	0.0865714	0.0338894	0.182221	0.133577
chr11	65435854	65435953	4871700	0	+	0.30303	(0.29,0.33]	chr11	468177	132	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	52	708	2	1.49922	1.84699	2.19476	0.0523638	0.0304063	0.167062	0.11845
chr2	21021463	21021560	1100650	0	-	0.463918	(0.45,0.485]	chr2	119982	12	INTRON	INTRON	APOB	ENSG00000084674.15	ENST00000233242.5:ENST00000673739.1:ENST00000673882.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	13	152	2	1.55458	1.8466	2.13862	0.0769922	0.0654763	0.187807	0.175175
chr11	65428664	65428764	4871628	0	+	0.58	(0.523,0.58]	chr11	468177	60	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	107	1414	2	1.4896	1.8427250000000002	2.19585	0.0933796	0.0091507	0.188571	0.0633428
chr11	2698194	2698294	4972293	0	-	0.3	(0.29,0.33]	chr11	481197	900	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	13	144	2	1.53131	1.82556	2.11981	0.0742377	0.0674577	0.192947	0.171628
chr18	58046199	58046280	7071461	0	+	0.530864	(0.523,0.58]	chr18	721083	2	SS5_PROX	SS5_PROX:INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	14	193	2	1.73755	1.8247	1.91185	0.0873085	0.0390996	0.183238	0.142619
chr11	2137305	2137389	4971171	0	-	0.678571	(0.58,1]	chr11	481164	1	INTRON	INTRON	IGF2	ENSG00000167244.22	ENST00000381406.8:ENST00000416167.7:ENST00000695541.1:ENST00000481781.3:ENST00000434045.6:ENST00000381389.5	protein_coding	protein_coding	protein_coding	protein_coding	25	305	2	1.79234	1.822875	1.85341	0.0540078	0.0299972	0.151505	0.126768
chr11	65504234	65504333	4871986	0	+	0.393939	(0.39,0.419]	chr11	468193	67	EXON_LNCRNA	EXON_LNCRNA:SSB_ADJ:SS3_ADJ:SS5_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000616527.4:ENST00000620465.4:ENST00000612781.1:ENST00000618132.1	lncRNA	lncRNA	lncRNA	lncRNA	359	4636	2	1.79687	1.82199	1.84711	0.0641124	0.0220368	0.161669	0.10754
chr6	158609790	158609890	3064402	0	+	0.55	(0.523,0.58]	chr6	297741	1	PRIMIRNA	PRIMIRNA:INTRON	TMEM181:MIR7161	ENSG00000146433.10:ENSG00000278571.1	ENST00000367090.4:ENST00000684151.1:ENST00000612973.1	miRNA	protein_coding	miRNA:protein_coding	protein_coding:primary_miRNA	11	128	2	1.62326	1.816995	2.01073	0.0897137	0.0607872	0.185499	0.179678
chr20	48931604	48931703	7490251	0	+	0.585859	(0.58,1]	chr20	780774	92	INTRON	INTRON	ARFGEF2	ENSG00000124198.10	ENST00000371917.5:ENST00000681399.1:ENST00000679436.1:ENST00000681885.1:ENST00000681021.1:ENST00000680871.1:ENST00000681656.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	9	102	2	1.76652	1.8094100000000002	1.8523	0.0833922	0.0541697	0.180983	0.167824
chr11	65433058	65433157	4871672	0	+	0.393939	(0.39,0.419]	chr11	468177	104	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	70	1170	2	1.57538	1.808825	2.04227	0.0495651	0.045322	0.160725	0.141996
chr11	65432359	65432458	4871665	0	+	0.30303	(0.29,0.33]	chr11	468177	97	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2:ENST00000687943.1	lncRNA	lncRNA	lncRNA	lncRNA	27	366	2	1.68112	1.800205	1.91929	0.0539922	0.0442589	0.153511	0.151466
chr20	33010140	33010235	7457390	0	+	0.526316	(0.523,0.58]	chr20	776365	11	INTRON	INTRON	BPIFB2	ENSG00000078898.7	ENST00000170150.4	protein_coding	protein_coding	protein_coding	protein_coding	14	174	2	1.52118	1.79407	2.06696	0.0707346	0.0629289	0.196868	0.1608
chr6	158571920	158572019	3064014	0	+	0.606061	(0.58,1]	chr6	297687	113	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	12	130	2	1.78029	1.78919	1.79809	0.0833655	0.0400144	0.180939	0.144363
chr11	65424071	65424170	4871582	0	+	0.50505	(0.485,0.523]	chr11	468177	14	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000612303.2:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000642367.1	lncRNA	lncRNA	lncRNA	lncRNA	156	2043	2	1.38148	1.786105	2.19073	0.0586196	0.0286992	0.17606	0.115888
chr11	2687398	2687498	4972185	0	-	0.59	(0.58,1]	chr11	481197	792	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	20	187	2	1.37431	1.78283	2.19135	0.0709888	0.041216	0.197562	0.136301
chr3	172090283	172090383	1627970	0	+	0.47	(0.45,0.485]	chr3	170535	430	INTRON	INTRON	FNDC3B	ENSG00000075420.13	ENST00000415807.7:ENST00000421757.5:ENST00000469491.5:ENST00000336824.8:ENST00000423424.5:ENST00000416957.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron	9	121	2	1.73697	1.779995	1.82302	0.104101	0.0655339	0.198342	0.187963
chr11	65432558	65432658	4871667	0	+	0.25	[0,0.29]	chr11	468177	99	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2:ENST00000687943.1	lncRNA	lncRNA	lncRNA	lncRNA	21	250	2	1.6245	1.779525	1.93455	0.0503636	0.0493293	0.162523	0.146226
chr11	2677102	2677202	4972082	0	-	0.4	(0.39,0.419]	chr11	481197	689	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	22	282	2	1.57452	1.7720699999999998	1.96962	0.0712856	0.0578078	0.175217	0.168159
chr19	6706483	6706571	7322820	0	-	0.568182	(0.523,0.58]	chr19	756484	4	SS3_PROX	SS3_PROX:INTRON	C3	ENSG00000125730.18	ENST00000245907.11:ENST00000695651.1:ENST00000695653.1:ENST00000695654.1:ENST00000695692.1:ENST00000695652.1:ENST00000695655.1	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay	20	242	2	1.45547	1.76841	2.08135	0.0699368	0.0531752	0.195209	0.149655
chr11	65431160	65431260	4871653	0	+	0.33	(0.29,0.33]	chr11	468177	85	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	34	469	2	1.50329	1.73662	1.96995	0.0616375	0.046463	0.18013	0.143232
chrX	109688322	109688421	8091014	0	-	0.444444	(0.419,0.45]	chrX	843698	25	INTRON	INTRON	ACSL4	ENSG00000068366.21	ENST00000469796.7:ENST00000672401.1:ENST00000348502.10:ENST00000340800.7:ENST00000684030.1:ENST00000682031.1:ENST00000671846.1:ENST00000672282.1:ENST00000502391.6:ENST00000684414.1:ENST00000673016.1:ENST00000505855.1:ENST00000508092.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:processed_transcript	17	234	2	1.68005	1.73392	1.78779	0.0965015	0.0552107	0.189542	0.169369
chr6	158566226	158566326	3063957	0	+	0.58	(0.523,0.58]	chr6	297687	56	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	18	238	2	1.66525	1.726175	1.7871	0.0757328	0.0557303	0.173983	0.170906
chr17	55274084	55274184	6757199	0	+	0.51	(0.485,0.523]	chr17	681704	56	INTRON	INTRON	HLF	ENSG00000108924.14	ENST00000226067.10:ENST00000430986.6:ENST00000573945.5:ENST00000575345.5:ENST00000570962.1:ENST00000572002.1	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	17	188	2	1.58486	1.723735	1.86261	0.0859746	0.0554195	0.181766	0.169996
chr11	65439648	65439748	4871738	0	+	0.31	(0.29,0.33]	chr11	468177	170	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	36	410	2	1.37101	1.72264	2.07427	0.0719186	0.0431046	0.199502	0.138403
chrX	20152104	20152204	7994251	0	-	0.38	(0.36,0.39]	chrX	836233	23	UTR3	UTR3:EXON_MRNA	RPS6KA3	ENSG00000177189.14	ENST00000379565.9	protein_coding	protein_coding	protein_coding	protein_coding	15	188	2	1.57953	1.71987	1.86021	0.0941302	0.0658657	0.188895	0.188571
chr6	158620457	158620557	3064509	0	+	0.56	(0.523,0.58]	chr6	297742	103	INTRON	INTRON	TMEM181	ENSG00000146433.10	ENST00000367090.4:ENST00000684151.1	protein_coding	protein_coding	protein_coding	protein_coding	17	210	2	1.71197	1.7192699999999999	1.72657	0.0887785	0.0475482	0.183874	0.158226
chr18	58047225	58047320	7071472	0	+	0.326316	(0.29,0.33]	chr18	721085	1	UTR5	UTR5:EXON_MRNA:EXON_LNCRNA:INTRON	NEDD4L	ENSG00000049759.20	ENST00000400345.8:ENST00000356462.10:ENST00000674845.1:ENST00000589054.5:ENST00000676024.1:ENST00000382850.8:ENST00000256830.13:ENST00000590694.5:ENST00000676223.1:ENST00000675147.1:ENST00000585594.6:ENST00000591989.5:ENST00000591579.5:ENST00000592846.5:ENST00000675801.1:ENST00000674613.1:ENST00000585363.5:ENST00000588516.5:ENST00000456986.5	protein_coding	protein_coding	protein_coding	protein_coding:retained_intron:nonsense_mediated_decay:processed_transcript	11	128	2	1.59515	1.713595	1.83204	0.0972076	0.0701272	0.195286	0.190849
chr17	82001844	82001944	6815315	0	+	0.62	(0.58,1]	chr17	688640	46	INTRON	INTRON	ASPSCR1	ENSG00000169696.16	ENST00000306729.11:ENST00000306739.9:ENST00000580534.5:ENST00000583503.5:ENST00000584454.5:ENST00000582355.6	protein_coding	protein_coding	protein_coding	protein_coding:nonsense_mediated_decay	20	171	2	1.54156	1.70851	1.87546	0.0803566	0.0477933	0.177452	0.1588
chr11	65431759	65431859	4871659	0	+	0.31	(0.29,0.33]	chr11	468177	91	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2:ENST00000687943.1	lncRNA	lncRNA	lncRNA	lncRNA	39	526	2	1.51805	1.699345	1.88064	0.0585654	0.0524455	0.175904	0.14912
chr22	42565141	42565235	7820445	0	-	0.617021	(0.58,1]	chr22	820200	2	EXON_SMALL	EXON_SMALL:INTRON	RRP7BP:RN7SKP80	ENSG00000182841.13:ENSG00000202058.1	ENST00000357802.7:ENST00000566851.6:ENST00000692200.1:ENST00000365188.1	misc_RNA	misc_RNA	misc_RNA:transcribed_unprocessed_pseudogene	misc_RNA:processed_transcript:transcribed_unprocessed_pseudogene	240	2403	2	1.23697	1.695135	2.1533	0.0682259	0.0215369	0.193274	0.100612
chr19	54459590	54459688	7292465	0	+	0.602041	(0.58,1]	chr19	750774	8	UTR3	UTR3:EXON_MRNA:INTRON	LENG8	ENSG00000167615.17	ENST00000616932.4:ENST00000326764.10:ENST00000376514.6:ENST00000610347.1:ENST00000421200.1	protein_coding	protein_coding	protein_coding	protein_coding	21	215	2	1.49601	1.688385	1.88076	0.0988016	0.0263731	0.193586	0.118085
chr8	22369235	22369335	3770040	0	+	0.55	(0.523,0.58]	chr8	362721	11	INTRON	INTRON	SLC39A14	ENSG00000104635.15	ENST00000359741.10:ENST00000381237.6:ENST00000520644.1:ENST00000240095.10:ENST00000289952.9:ENST00000524285.1	protein_coding	protein_coding	protein_coding	protein_coding	22	218	2	1.43063	1.684045	1.93746	0.0769182	0.067693	0.193219	0.175015
chr20	62956364	62956464	7508259	0	+	0.59	(0.58,1]	chr20	783171	2	SS3_PROX	SS3_PROX:INTRON	SLC17A9	ENSG00000101194.18	ENST00000370349.7:ENST00000370351.9:ENST00000488738.5:ENST00000411611.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	10	105	2	1.65621	1.675905	1.6956	0.101488	0.0628207	0.196431	0.18231
chr11	65432958	65433058	4871671	0	+	0.3	(0.29,0.33]	chr11	468177	103	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2:ENST00000687943.1	lncRNA	lncRNA	lncRNA	lncRNA	73	892	2	1.64874	1.6705450000000002	1.69235	0.0675223	0.0367346	0.163734	0.139793
chr11	2698394	2698494	4972295	0	-	0.48	(0.45,0.485]	chr11	481197	902	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	18	195	2	1.46559	1.6696849999999999	1.87378	0.0876654	0.0710553	0.197738	0.183437
chr8	17905593	17905693	3946861	0	-	0.46	(0.45,0.485]	chr8	377064	88	INTRON	INTRON	FGL1	ENSG00000104760.17	ENST00000398056.6	protein_coding	protein_coding	protein_coding	protein_coding	27	325	2	1.64672	1.65809	1.66946	0.0901798	0.04633	0.186251	0.15584
chr18	49813960	49814058	7060316	0	+	0.816327	(0.58,1]	chr18	720432	1	EXON_LNCRNA	EXON_LNCRNA	SNHG22	ENSG00000267322.3	ENST00000690629.1:ENST00000692415.1:ENST00000690594.1:ENST00000684796.1:ENST00000692469.1:ENST00000691136.1:ENST00000692861.1:ENST00000688852.1:ENST00000688432.1:ENST00000686035.1:ENST00000688272.1:ENST00000692680.1:ENST00000687037.1:ENST00000692863.1:ENST00000691335.1:ENST00000685185.1:ENST00000688673.1:ENST00000690662.1:ENST00000689920.1:ENST00000692027.1:ENST00000685190.1:ENST00000687911.1:ENST00000691363.1:ENST00000687196.1:ENST00000589499.1:ENST00000615535.1	lncRNA	lncRNA	lncRNA	lncRNA	34	392	2	1.40747	1.649945	1.89242	0.0676812	0.0427719	0.193219	0.13762
chr11	65439748	65439848	4871739	0	+	0.45	(0.419,0.45]	chr11	468177	171	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	105	1361	2	1.41617	1.64516	1.87415	0.0640588	0.0625709	0.184676	0.160305
chr11	65439348	65439448	4871735	0	+	0.38	(0.36,0.39]	chr11	468177	167	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	67	898	2	1.4168	1.6440350000000001	1.87127	0.0664661	0.0605681	0.19036	0.158506
chr11	2691996	2692096	4972231	0	-	0.62	(0.58,1]	chr11	481197	838	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	25	237	2	1.55174	1.624205	1.69667	0.0726895	0.0478009	0.169185	0.1588
chr11	65434056	65434156	4871682	0	+	0.4	(0.39,0.419]	chr11	468177	114	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	118	1652	2	1.50999	1.6155	1.72101	0.0731586	0.0528614	0.170157	0.167062
chr8	17905493	17905593	3946860	0	-	0.39	(0.36,0.39]	chr8	377064	87	INTRON	INTRON	FGL1	ENSG00000104760.17	ENST00000398056.6	protein_coding	protein_coding	protein_coding	protein_coding	35	417	2	1.43953	1.613905	1.78828	0.0786456	0.0688624	0.193274	0.175203
chr14	39267522	39267622	5792176	0	+	0.69	(0.58,1]	chr14	567492	1	SS5_ADJ	SS5_ADJ:SS5_PROX:INTRON	MIA2	ENSG00000150527.18	ENST00000553728.1:ENST00000640607.2:ENST00000554392.5:ENST00000555716.5:ENST00000341749.7:ENST00000557038.5:ENST00000396165.8:ENST00000556990.1:ENST00000396158.6:ENST00000280083.7:ENST00000341502.9:ENST00000556148.5:ENST00000348007.7	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	19	160	2	1.37419	1.60637	1.83855	0.0758099	0.0727006	0.199502	0.174152
chr11	65424370	65424470	4871585	0	+	0.45	(0.419,0.45]	chr11	468177	17	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000499732.3:ENST00000687132.1:ENST00000501122.2:ENST00000685861.1:ENST00000601801.3:ENST00000612303.2:ENST00000670617.1:ENST00000646243.1:ENST00000645023.1:ENST00000642367.1	lncRNA	lncRNA	lncRNA	lncRNA	185	2465	2	1.38746	1.60585	1.82424	0.065933	0.0650656	0.189025	0.162385
chr11	65432059	65432159	4871662	0	+	0.35	(0.33,0.36]	chr11	468177	94	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2:ENST00000687943.1	lncRNA	lncRNA	lncRNA	lncRNA	65	856	2	1.53183	1.5938750000000002	1.65592	0.0785467	0.0541963	0.175203	0.167824
chr11	2698594	2698694	4972297	0	-	0.5	(0.485,0.523]	chr11	481197	904	EXON_LNCRNA	EXON_LNCRNA	KCNQ1OT1	ENSG00000269821.1	ENST00000597346.1	lncRNA	lncRNA	lncRNA	lncRNA	21	224	2	1.48638	1.5796100000000002	1.67284	0.0961002	0.066133	0.189429	0.189169
chr2	148881729	148881819	1280102	0	-	0.422222	(0.419,0.45]	chr2	137813	1	EXON_LNCRNA	EXON_LNCRNA	ENSG00000289474	ENSG00000289474.1	ENST00000690366.1	lncRNA	lncRNA	lncRNA	lncRNA	128	1444	2	1.54866	1.57492	1.60118	0.102448	0.0420905	0.197541	0.149195
chr11	65504730	65504829	4871991	0	+	0.40404	(0.39,0.419]	chr11	468193	72	EXON_LNCRNA	EXON_LNCRNA:SS3_ADJ:SSB_PROX:SS3_PROX:SS5_PROX:INTRON	MALAT1	ENSG00000251562.9	ENST00000619449.2:ENST00000534336.1:ENST00000618132.1:ENST00000613376.1:ENST00000610851.1	lncRNA	lncRNA	lncRNA	lncRNA	513	5534	2	1.49373	1.550915	1.6081	0.100977	0.0381019	0.196131	0.140822
chr14	39181472	39181569	5791767	0	+	0.525773	(0.523,0.58]	chr14	567432	11	CDS	CDS:EXON_MRNA:INTRON	PNN	ENSG00000100941.9	ENST00000216832.9:ENST00000557680.1	protein_coding	protein_coding	protein_coding	protein_coding:processed_transcript	24	246	2	1.48657	1.53964	1.59271	0.104842	0.062515	0.19881	0.181583
chr11	65437052	65437152	4871712	0	+	0.26	[0,0.29]	chr11	468177	144	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	31	302	2	1.42948	1.534645	1.63981	0.0749942	0.0655202	0.18793	0.172839
chr11	65432159	65432259	4871663	0	+	0.38	(0.36,0.39]	chr11	468177	95	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2:ENST00000687943.1	lncRNA	lncRNA	lncRNA	lncRNA	83	1042	2	1.37645	1.4981749999999998	1.6199	0.0866819	0.0718808	0.199502	0.182221
chr11	65442444	65442544	4871766	0	+	0.6	(0.58,1]	chr11	468177	198	EXON_LNCRNA	EXON_LNCRNA	NEAT1	ENSG00000245532.10	ENST00000501122.2	lncRNA	lncRNA	lncRNA	lncRNA	90	785	2	1.31969	1.440385	1.56108	0.0705372	0.0619514	0.180665	0.168159